BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62] (170 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62] gi|254039974|gb|ACT56770.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62] Length = 170 Score = 347 bits (890), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 170/170 (100%), Positives = 170/170 (100%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV Sbjct: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ Sbjct: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD Sbjct: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 >gi|315122858|ref|YP_004063347.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496260|gb|ADR52859.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 165 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 117/167 (70%), Positives = 146/167 (87%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KK L+ FPDP+LRRVSR +E I+SDI++LI++M EVMYS+DGIGLAAVQIG+LYR+VV Sbjct: 1 MKKKSLIFFPDPVLRRVSRSVETIDSDIIHLIEDMFEVMYSSDGIGLAAVQIGILYRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + K+P+VFINP I++ S+D SV EGCLSIP++RADVKR++F+TV+Y+D NAQ Sbjct: 61 IDL----NTKSPLVFINPTIVSSSNDCSVRAEGCLSIPNHRADVKRASFVTVKYLDSNAQ 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 QIIYADGLLATCLQHE+DHLNGILFIDH+SRLKRDMI K+ KL++ Sbjct: 117 PQIIYADGLLATCLQHEIDHLNGILFIDHISRLKRDMIINKILKLIR 163 >gi|325291800|ref|YP_004277664.1| polypeptide deformylase peptide deformylase [Agrobacterium sp. H13-3] gi|325059653|gb|ADY63344.1| polypeptide deformylase peptide deformylase [Agrobacterium sp. H13-3] Length = 170 Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 100/169 (59%), Positives = 135/169 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ SRPIE+++++++ L D+MLE MY GIGLAA+Q+GV R++V Sbjct: 1 MTIKPLIILPDPVLRQQSRPIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+I+ SDD S Y+EGCLSIPDY A+V+R A +TVRY+D + + Sbjct: 61 IDVSREDEEKKPVVFINPEILRVSDDVSAYEEGCLSIPDYYAEVERPASLTVRYVDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 HQ++ ADGLLATCLQHE+DHLNGILFIDH+SRLKR+M+ KK +K + + Sbjct: 121 HQMVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIKKFTKAARAK 169 >gi|190890084|ref|YP_001976626.1| peptide deformylase [Rhizobium etli CIAT 652] gi|190695363|gb|ACE89448.1| peptide deformylase protein [Rhizobium etli CIAT 652] Length = 171 Score = 223 bits (567), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 98/167 (58%), Positives = 132/167 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167 >gi|86356069|ref|YP_467961.1| peptide deformylase [Rhizobium etli CFN 42] gi|86280171|gb|ABC89234.1| peptide deformylase protein [Rhizobium etli CFN 42] Length = 171 Score = 223 bits (567), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 98/167 (58%), Positives = 132/167 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SDD SVY+EGCLSIPDY A+V+R A ++V+Y+D + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDDRSVYEEGCLSIPDYYAEVERPATVSVKYLDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q++ ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167 >gi|327191106|gb|EGE58154.1| peptide deformylase protein [Rhizobium etli CNPAF512] Length = 171 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 98/167 (58%), Positives = 131/167 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVEYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167 >gi|241202826|ref|YP_002973922.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856716|gb|ACS54383.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 171 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 97/167 (58%), Positives = 132/167 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE+++SD+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+++ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDIAREGEEKQPQVFINPEVVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167 >gi|218460831|ref|ZP_03500922.1| peptide deformylase [Rhizobium etli Kim 5] Length = 171 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 98/167 (58%), Positives = 132/167 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPILRQLSQPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167 >gi|116250199|ref|YP_766037.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841] gi|115254847|emb|CAK05921.1| putative peptide deformylase (polypeptide deformylase) [Rhizobium leguminosarum bv. viciae 3841] Length = 171 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 97/167 (58%), Positives = 132/167 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE+++SD+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ S+Y+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDISREGEEKQPQVFINPEIVKSSDERSLYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167 >gi|218672914|ref|ZP_03522583.1| peptide deformylase [Rhizobium etli GR56] Length = 171 Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 98/167 (58%), Positives = 133/167 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPILRQLSQPIERMDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q++ ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167 >gi|218513698|ref|ZP_03510538.1| peptide deformylase [Rhizobium etli 8C-3] Length = 171 Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 97/167 (58%), Positives = 131/167 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP LR++S+PIE++++++ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPFLRQLSKPIERVDAELQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167 >gi|209547667|ref|YP_002279584.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533423|gb|ACI53358.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 171 Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 97/167 (58%), Positives = 131/167 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+ S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPILRQASKPIERVDADLQGLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+++D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKFLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167 >gi|227820644|ref|YP_002824614.1| peptide deformylase [Sinorhizobium fredii NGR234] gi|227339643|gb|ACP23861.1| peptide deformylase [Sinorhizobium fredii NGR234] Length = 174 Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 100/169 (59%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+VS P+E I++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 1 MTIKPLIILPDPILRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPKI+ S++ SVY+EGCLSIPDY A+V+R A I V Y+D + + Sbjct: 61 LDVSKEGEEKTPLVFINPKIVKSSEERSVYEEGCLSIPDYYAEVERPAAIAVEYLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K + R Sbjct: 121 QQSVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169 >gi|150395282|ref|YP_001325749.1| peptide deformylase [Sinorhizobium medicae WSM419] gi|150026797|gb|ABR58914.1| peptide deformylase [Sinorhizobium medicae WSM419] Length = 174 Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 98/169 (57%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E +++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 1 MTIKPLIILPDPVLRQVSTPVETVDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPK++ S++ SVY+EGCLSIPDY A+V+R A ITV Y+D + Sbjct: 61 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K + R Sbjct: 121 EQAVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169 >gi|222084707|ref|YP_002543236.1| peptide deformylase [Agrobacterium radiobacter K84] gi|221722155|gb|ACM25311.1| peptide deformylase [Agrobacterium radiobacter K84] Length = 171 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 97/167 (58%), Positives = 134/167 (80%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S+PIE+++++I+ L D+MLE MY GIGLAAVQIGV R++V Sbjct: 1 MTIKPLIILPDPLLRQASKPIERVDTEILRLADDMLETMYDAPGIGLAAVQIGVARRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+++ SD+ SVY+EGCLSIPDY A+V+R A +TV+++D + + Sbjct: 61 IDVAREGEDKQPLVFINPEVVASSDERSVYEEGCLSIPDYYAEVERPARVTVKHIDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q+I ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + Sbjct: 121 EQLIEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167 >gi|23396548|sp|Q92SH6|DEF_RHIME RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase Length = 174 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 97/169 (57%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E I++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 1 MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPK++ S++ SVY+EGCLSIPDY A+V+R A ITV Y+D + Sbjct: 61 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K + R Sbjct: 121 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 169 >gi|15964172|ref|NP_384525.1| peptide deformylase [Sinorhizobium meliloti 1021] gi|307301317|ref|ZP_07581079.1| peptide deformylase [Sinorhizobium meliloti BL225C] gi|307317988|ref|ZP_07597425.1| peptide deformylase [Sinorhizobium meliloti AK83] gi|15073348|emb|CAC41856.1| Probable peptide deformylase [Sinorhizobium meliloti 1021] gi|306896390|gb|EFN27139.1| peptide deformylase [Sinorhizobium meliloti AK83] gi|306903773|gb|EFN34360.1| peptide deformylase [Sinorhizobium meliloti BL225C] Length = 178 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 97/169 (57%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E I++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 5 MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPK++ S++ SVY+EGCLSIPDY A+V+R A ITV Y+D + Sbjct: 65 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K + R Sbjct: 125 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 173 >gi|15887717|ref|NP_353398.1| peptide deformylase [Agrobacterium tumefaciens str. C58] gi|23396541|sp|Q8UID1|DEF_AGRT5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|15155278|gb|AAK86183.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58] Length = 170 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 96/169 (56%), Positives = 131/169 (77%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S+ IE+++++++ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQQSKLIEQVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+I+ SDD S Y+EGCLSIPDY A+V+R A +TV+Y+ + + Sbjct: 61 IDVAREGEEKTPVVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQYVGRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKRDM+ KK +K + + Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAARAK 169 >gi|254501503|ref|ZP_05113654.1| peptide deformylase [Labrenzia alexandrii DFL-11] gi|222437574|gb|EEE44253.1| peptide deformylase [Labrenzia alexandrii DFL-11] Length = 189 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 96/168 (57%), Positives = 124/168 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+P++ PDP+LR V PIEK++++ + L D+MLE MY GIGLAA Q+G+L R+ V Sbjct: 18 MTKRPIITIPDPVLREVCAPIEKVDAETIALADDMLETMYDAPGIGLAASQVGILKRIFV 77 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K PMVFINP+II + D+ SVYQEGCLSIPDY DV+R A + V++MD Sbjct: 78 LDVAKEDAPKEPMVFINPEIIWYGDELSVYQEGCLSIPDYYEDVERPAEVAVKFMDREGA 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K +L Sbjct: 138 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKL 185 >gi|163757845|ref|ZP_02164934.1| peptide deformylase [Hoeflea phototrophica DFL-43] gi|162285347|gb|EDQ35629.1| peptide deformylase [Hoeflea phototrophica DFL-43] Length = 172 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 95/169 (56%), Positives = 127/169 (75%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLV+ PDPILR+ S P+E++++++ ID+MLE MY GIGLAA+Q+GV RL+V Sbjct: 1 MTIKPLVLLPDPILRQQSLPVERVDAELEGFIDDMLETMYDAPGIGLAAIQVGVPRRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K+P VFINP+++ D SVY+EGCLSIPDY ADV+R ITV+Y+ + + Sbjct: 61 IDVAGKDEPKSPQVFINPEVVATGDGISVYEEGCLSIPDYYADVERPETITVKYLGRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ADGLLATCLQHE+DHLNG+LFIDH+S+LKRDM+ +K +KL + R Sbjct: 121 EHTTEADGLLATCLQHEIDHLNGVLFIDHISKLKRDMVVRKFTKLAKQR 169 >gi|222147432|ref|YP_002548389.1| peptide deformylase [Agrobacterium vitis S4] gi|221734422|gb|ACM35385.1| peptide deformylase [Agrobacterium vitis S4] Length = 176 Score = 209 bits (533), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 97/158 (61%), Positives = 123/158 (77%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++I PDP+LR VS+PIE+I++D+ LID+MLE MY GIGLAAVQI V RL+V Sbjct: 5 MTTKPIIILPDPLLREVSQPIERIDADLERLIDDMLETMYDAPGIGLAAVQIAVPRRLLV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+II S S Y+EGCLSIPDY A+V+R A +TV+ +D + + Sbjct: 65 IDVSKEGEDKQPLVFINPEIIGSSQARSTYEEGCLSIPDYYAEVERPAAVTVKSLDRHGK 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Q+I ADGLLATCLQHE+DHLNG LFIDH+SRLKR+M+ Sbjct: 125 EQVIEADGLLATCLQHEIDHLNGTLFIDHISRLKREMV 162 >gi|90419800|ref|ZP_01227709.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1] gi|90335841|gb|EAS49589.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1] Length = 170 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 91/164 (55%), Positives = 122/164 (74%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S+P+E ++ + L D+MLE MY GIGLAA+QIG R++V Sbjct: 1 MTIKPLIILPDPVLRQTSKPVETVDDQVRRLADDMLETMYDAPGIGLAAIQIGEPLRMMV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ P +F+NP+I+T SD SVY+EGCLSIPDY A+V+R A +TVRY+ + + Sbjct: 61 IDVSKEEEENAPRIFLNPEILTISDAVSVYEEGCLSIPDYYAEVERPAEVTVRYLGLDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADG+LATC+QHELDHLNG+LFIDH+S+LKRDM+ KK +K Sbjct: 121 MHEETADGILATCVQHELDHLNGVLFIDHISKLKRDMVVKKFTK 164 >gi|319780347|ref|YP_004139823.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166235|gb|ADV09773.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 176 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 94/164 (57%), Positives = 125/164 (76%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 KPL+I PDPILR+VS+P+E++++ + L D+ML MY GIGLAA+QIG RL+VIDL Sbjct: 4 KPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRLLVIDL 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P VFINP+I+ +D SVY+EGCLSIPDY A+V+R A + V+Y+D + + Q Sbjct: 64 AKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGKLQE 123 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL + Sbjct: 124 IEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKKLAR 167 >gi|153008675|ref|YP_001369890.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] gi|151560563|gb|ABS14061.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] Length = 175 Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 92/169 (54%), Positives = 121/169 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLVI PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLVILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P VFINP+I+ +D+ S Y+EGCLSIPDY A+V+R A I V Y D + + Sbjct: 61 IDLAKEDEPKAPHVFINPEIVGVTDEVSTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +I ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 QHLIEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|110632755|ref|YP_672963.1| peptide deformylase [Mesorhizobium sp. BNC1] gi|122966266|sp|Q11LC7|DEF_MESSB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|110283739|gb|ABG61798.1| peptide deformylase [Chelativorans sp. BNC1] Length = 177 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 90/169 (53%), Positives = 128/169 (75%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV PDP+LR+VS+P+E+++ + +MLE MY GIGLAA+Q+G R++V Sbjct: 1 MAIRPLVTLPDPLLRQVSKPVERVDESLRKFAGDMLETMYDAPGIGLAAIQVGEPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + KNP VFINP+I++ SD S ++EGCLSIPDY A+V+R A +TV+Y+D + + Sbjct: 61 LDVAEKDEPKNPQVFINPEIVSRSDVPSFHEEGCLSIPDYYAEVERPAEVTVKYVDLDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 QI+ A G+LATCLQHE+DHLNG+LFID+LS+LKRDM+ +K KL + R Sbjct: 121 EQIVEAKGILATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFRKLAKDR 169 >gi|114705885|ref|ZP_01438788.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506] gi|114538731|gb|EAU41852.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506] Length = 173 Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 87/169 (51%), Positives = 124/169 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S P+ +++ + D+MLE MY GIGLAA+Q+G R++ Sbjct: 1 MTIKPLIILPDPVLRKTSEPVARVDDALKRFADDMLETMYEAPGIGLAAIQVGEPLRMLT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VF+NP+I++ S+DFSVY+EGCLSIP+Y A+V+R A ++VRY+ + + Sbjct: 61 IDISKEEEAKEPRVFLNPEIVSRSEDFSVYEEGCLSIPEYFAEVERPARVSVRYLGLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLATCLQHE+DHLNG+LFID+LS+LKRDM+ KK +K + + Sbjct: 121 MHEEEAEGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVIKKFTKAARTK 169 >gi|17988608|ref|NP_541241.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|23500757|ref|NP_700197.1| peptide deformylase [Brucella suis 1330] gi|62317863|ref|YP_223716.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941] gi|83269841|ref|YP_419132.1| peptide deformylase [Brucella melitensis biovar Abortus 2308] gi|148557936|ref|YP_001257946.1| peptide deformylase [Brucella ovis ATCC 25840] gi|161621082|ref|YP_001594968.1| peptide deformylase [Brucella canis ATCC 23365] gi|163845148|ref|YP_001622803.1| peptide deformylase [Brucella suis ATCC 23445] gi|225629484|ref|ZP_03787517.1| peptide deformylase [Brucella ceti str. Cudo] gi|225686789|ref|YP_002734761.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|237817404|ref|ZP_04596396.1| peptide deformylase [Brucella abortus str. 2308 A] gi|256015794|ref|YP_003105803.1| peptide deformylase [Brucella microti CCM 4915] gi|17984410|gb|AAL53505.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|23464412|gb|AAN34202.1| polypeptide deformylase [Brucella suis 1330] gi|62198056|gb|AAX76355.1| Def-2, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941] gi|82940115|emb|CAJ13163.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus 2308] gi|148369221|gb|ABQ62093.1| peptide deformylase [Brucella ovis ATCC 25840] gi|161337893|gb|ABX64197.1| peptide deformylase [Brucella canis ATCC 23365] gi|163675871|gb|ABY39981.1| peptide deformylase [Brucella suis ATCC 23445] gi|225615980|gb|EEH13029.1| peptide deformylase [Brucella ceti str. Cudo] gi|225642894|gb|ACO02807.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|237788217|gb|EEP62433.1| peptide deformylase [Brucella abortus str. 2308 A] gi|255998454|gb|ACU50141.1| peptide deformylase [Brucella microti CCM 4915] Length = 187 Score = 200 bits (509), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 89/169 (52%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 13 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 73 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 132 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 133 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 181 >gi|254720138|ref|ZP_05181949.1| peptide deformylase [Brucella sp. 83/13] gi|265985144|ref|ZP_06097879.1| peptide deformylase [Brucella sp. 83/13] gi|306838492|ref|ZP_07471332.1| peptide deformylase [Brucella sp. NF 2653] gi|264663736|gb|EEZ33997.1| peptide deformylase [Brucella sp. 83/13] gi|306406424|gb|EFM62663.1| peptide deformylase [Brucella sp. NF 2653] Length = 175 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 90/169 (53%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +FINP I+ SD+ S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFINPTIVQSSDERSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|118589715|ref|ZP_01547120.1| peptide deformylase [Stappia aggregata IAM 12614] gi|118437801|gb|EAV44437.1| peptide deformylase [Stappia aggregata IAM 12614] Length = 202 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 93/168 (55%), Positives = 121/168 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ PDP+LR V P+ ++ D+ L D+MLE MY GIGLAA QIG+L R+ V Sbjct: 31 MTIRPIITIPDPVLREVCAPVATVDDDVRKLADDMLETMYDAPGIGLAASQIGLLQRIFV 90 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K PMVFINPKI+ SDD SVYQEGCLSIPDY +V+R A +TV++++ Sbjct: 91 LDVAKDDAPKEPMVFINPKIVWSSDDLSVYQEGCLSIPDYYEEVERPAEVTVQFLNREGA 150 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K ++ Sbjct: 151 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKM 198 >gi|189023113|ref|YP_001932854.1| peptide deformylase [Brucella abortus S19] gi|254690651|ref|ZP_05153905.1| peptide deformylase [Brucella abortus bv. 6 str. 870] gi|254696044|ref|ZP_05157872.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|254699153|ref|ZP_05160981.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|254700229|ref|ZP_05162057.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|254703350|ref|ZP_05165178.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|254705509|ref|ZP_05167337.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|254710740|ref|ZP_05172551.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|254732597|ref|ZP_05191175.1| peptide deformylase [Brucella abortus bv. 4 str. 292] gi|256029123|ref|ZP_05442737.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|256043903|ref|ZP_05446822.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|256058806|ref|ZP_05449022.1| peptide deformylase [Brucella neotomae 5K33] gi|256111033|ref|ZP_05452095.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|256157315|ref|ZP_05455233.1| peptide deformylase [Brucella ceti M490/95/1] gi|256253707|ref|ZP_05459243.1| peptide deformylase [Brucella ceti B1/94] gi|256255833|ref|ZP_05461369.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|256262077|ref|ZP_05464609.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9] gi|260167785|ref|ZP_05754596.1| peptide deformylase [Brucella sp. F5/99] gi|260545098|ref|ZP_05820919.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260565079|ref|ZP_05835564.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260567720|ref|ZP_05838189.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260756222|ref|ZP_05868570.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870] gi|260760409|ref|ZP_05872757.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292] gi|260763649|ref|ZP_05875981.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|260882046|ref|ZP_05893660.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|261216476|ref|ZP_05930757.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|261220844|ref|ZP_05935125.1| peptide deformylase [Brucella ceti B1/94] gi|261312913|ref|ZP_05952110.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|261318308|ref|ZP_05957505.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|261322743|ref|ZP_05961940.1| peptide deformylase [Brucella neotomae 5K33] gi|261750724|ref|ZP_05994433.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|261753980|ref|ZP_05997689.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|261757222|ref|ZP_06000931.1| peptide deformylase [Brucella sp. F5/99] gi|265986106|ref|ZP_06098663.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|265990325|ref|ZP_06102882.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|265992568|ref|ZP_06105125.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|265995800|ref|ZP_06108357.1| peptide deformylase [Brucella ceti M490/95/1] gi|294853988|ref|ZP_06794660.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] gi|297249202|ref|ZP_06932903.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196] gi|54036953|sp|P63914|DEF_BRUSU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|54040741|sp|P63913|DEF_BRUME RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189021687|gb|ACD74408.1| Formylmethionine deformylase [Brucella abortus S19] gi|260098369|gb|EEW82243.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260152722|gb|EEW87815.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260154385|gb|EEW89466.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260670727|gb|EEX57667.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292] gi|260674070|gb|EEX60891.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|260676330|gb|EEX63151.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870] gi|260871574|gb|EEX78643.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|260918083|gb|EEX84944.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|260919428|gb|EEX86081.1| peptide deformylase [Brucella ceti B1/94] gi|261297531|gb|EEY01028.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|261298723|gb|EEY02220.1| peptide deformylase [Brucella neotomae 5K33] gi|261301939|gb|EEY05436.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|261737206|gb|EEY25202.1| peptide deformylase [Brucella sp. F5/99] gi|261740477|gb|EEY28403.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|261743733|gb|EEY31659.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|262550097|gb|EEZ06258.1| peptide deformylase [Brucella ceti M490/95/1] gi|262763438|gb|EEZ09470.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|263000994|gb|EEZ13684.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|263091766|gb|EEZ16097.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9] gi|264658303|gb|EEZ28564.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|294819643|gb|EFG36643.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] gi|297173071|gb|EFH32435.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196] gi|326411197|gb|ADZ68261.1| peptide deformylase [Brucella melitensis M28] gi|326554488|gb|ADZ89127.1| peptide deformylase [Brucella melitensis M5-90] Length = 175 Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 89/169 (52%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|239832661|ref|ZP_04680990.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] gi|239824928|gb|EEQ96496.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] Length = 175 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 89/167 (53%), Positives = 119/167 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLLILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P VFINP+I+ +D+ S Y+EGCLSIPDY A+V+R A I V Y D + + Sbjct: 61 IDLAKEGEPKAPHVFINPEIVGVTDEASTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL Sbjct: 121 PHAMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLAS 167 >gi|254712790|ref|ZP_05174601.1| peptide deformylase [Brucella ceti M644/93/1] gi|254715859|ref|ZP_05177670.1| peptide deformylase [Brucella ceti M13/05/1] gi|261217620|ref|ZP_05931901.1| peptide deformylase [Brucella ceti M13/05/1] gi|261320497|ref|ZP_05959694.1| peptide deformylase [Brucella ceti M644/93/1] gi|260922709|gb|EEX89277.1| peptide deformylase [Brucella ceti M13/05/1] gi|261293187|gb|EEX96683.1| peptide deformylase [Brucella ceti M644/93/1] Length = 175 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 89/169 (52%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDALGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|306840227|ref|ZP_07473002.1| peptide deformylase [Brucella sp. BO2] gi|306289832|gb|EFM61011.1| peptide deformylase [Brucella sp. BO2] Length = 175 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 89/169 (52%), Positives = 118/169 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|306846236|ref|ZP_07478798.1| peptide deformylase [Brucella sp. BO1] gi|306273487|gb|EFM55348.1| peptide deformylase [Brucella sp. BO1] Length = 175 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 89/169 (52%), Positives = 118/169 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKCSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMDADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|319407942|emb|CBI81596.1| polypeptide deformylase [Bartonella schoenbuchensis R1] Length = 174 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 91/167 (54%), Positives = 123/167 (73%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K LV PDPILR VS+P+E+I+ I L D+MLE MY GIGLAA+Q+GV R++VID+ Sbjct: 2 KSLVTLPDPILREVSKPVEQIDLAIQKLADDMLETMYHAQGIGLAAIQVGVPLRMLVIDI 61 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 ++ KNP+V INP+I+ SD+ ++Y+EGCLSIP+Y A V+R + VRY D + Sbjct: 62 AENNTPKNPLVVINPEILWLSDERNIYKEGCLSIPEYYAQVERPKRLRVRYSDREGKQTE 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K+ K + +D Sbjct: 122 IEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKLKKRAKEKD 168 >gi|154247233|ref|YP_001418191.1| peptide deformylase [Xanthobacter autotrophicus Py2] gi|154161318|gb|ABS68534.1| peptide deformylase [Xanthobacter autotrophicus Py2] Length = 172 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 86/170 (50%), Positives = 123/170 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I P+P LR +S +EKI+S++ L+++M + MY GIGLAA+Q+GV R+V Sbjct: 1 MATRPILIIPEPKLRTLSASVEKIDSEVKKLVEDMFDTMYDAPGIGLAAIQVGVQRRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+ INP+II S++ SVY EGCLSIP+Y +V+R A +TVR+ D Q Sbjct: 61 IDVAREGEAKKPIALINPEIIAASEETSVYAEGCLSIPEYYEEVERPARVTVRFQDIEGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + ADGL ATC+QHE+DHLNG+LFIDH+S+LKRD + KK +KL + +D Sbjct: 121 VREVAADGLFATCVQHEIDHLNGVLFIDHISKLKRDRVIKKFTKLARHKD 170 >gi|260461121|ref|ZP_05809370.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] gi|259033155|gb|EEW34417.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] Length = 176 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 89/159 (55%), Positives = 121/159 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+VS+P+E++++ + L D+ML MY GIGLAA+QIG R++V Sbjct: 1 MPIKPLIILPDPILRQVSKPVERVDAPLRGLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL P VFINP+I+ +D SVY+EGCLSIPDY A+V+R A + V+Y+D + + Sbjct: 61 IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVV 159 >gi|319898269|ref|YP_004158362.1| polypeptide deformylase [Bartonella clarridgeiae 73] gi|319402233|emb|CBI75766.1| polypeptide deformylase [Bartonella clarridgeiae 73] Length = 171 Score = 194 bits (492), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 90/161 (55%), Positives = 121/161 (75%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 KPLVI PDPILR VS+P+E I+S I L D+MLE MY+ GIGLAAVQ+GV R++V+D+ Sbjct: 4 KPLVILPDPILREVSKPVEHIDSIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLVLDI 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 KNP+V INP+I+ S++ ++Y+EGCLSIP+Y A+V+R ++ + Y D + Sbjct: 64 SSKDAPKNPLVVINPEILWISNERNIYREGCLSIPEYYAEVERPKYLRICYRDREGKQAE 123 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K K Sbjct: 124 IEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKFKK 164 >gi|307943158|ref|ZP_07658503.1| peptide deformylase [Roseibium sp. TrichSKD4] gi|307773954|gb|EFO33170.1| peptide deformylase [Roseibium sp. TrichSKD4] Length = 196 Score = 194 bits (492), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 93/168 (55%), Positives = 122/168 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ PD LR V P+E +++DI L D+M E MY+ GIGLAA QIGVL RL V Sbjct: 23 MTKRSILTIPDAQLREVCAPVETVDADIKALADDMFETMYAAPGIGLAASQIGVLKRLFV 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K+PMVFINPKI+ S+D SVYQEGCLSIPDY D++R A + V++++ + Sbjct: 83 LDVAKEDAPKDPMVFINPKIVWSSEDTSVYQEGCLSIPDYYEDIERPAKVRVQFLNRDGA 142 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + ADGLLATC+QHELDHL G LFID+LS+LKRD + KK +KL +L Sbjct: 143 EQEMEADGLLATCIQHELDHLYGRLFIDYLSKLKRDRVMKKFNKLAKL 190 >gi|49473752|ref|YP_031794.1| polypeptide deformylase [Bartonella quintana str. Toulouse] gi|81696103|sp|Q6G1G6|DEF_BARQU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|49239255|emb|CAF25576.1| Polypeptide deformylase [Bartonella quintana str. Toulouse] Length = 176 Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 87/161 (54%), Positives = 120/161 (74%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 KPL+I PDPILR VS+P+E ++S I L D+MLE MY G+GLAA+QIG+ R++VID+ Sbjct: 4 KPLIILPDPILREVSKPVEHVDSTIQKLADDMLETMYDAQGVGLAAIQIGIPLRMLVIDV 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + +KNP+V INP+I+ SD+ ++ +EGCLSIP+Y +++R + VRY D + Sbjct: 64 SRNETQKNPLVIINPEILWLSDERNICKEGCLSIPEYYTEIERPKRLCVRYQDREGKQTE 123 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K K Sbjct: 124 IEADHLLATCLQHEIDHLNGRLFIDHISKIKRDMVIRKFKK 164 >gi|13474065|ref|NP_105633.1| peptide deformylase [Mesorhizobium loti MAFF303099] gi|23396550|sp|Q98D52|DEF_RHILO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|14024817|dbj|BAB51419.1| N-formylmethionylaminoacyl-tRNA deformylase [Mesorhizobium loti MAFF303099] Length = 176 Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 87/156 (55%), Positives = 120/156 (76%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 KPL+I PDPILR+VS+P+E++++ + L D+ML MY GIGLAA+QIG R++VIDL Sbjct: 4 KPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRMLVIDL 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P VFINP+I+ ++ SVY+EGCLSIPDY A+V+R A + V+Y+D + + Q Sbjct: 64 AKEDETPAPHVFINPEILESAEARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGKLQE 123 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ Sbjct: 124 MEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVV 159 >gi|49474898|ref|YP_032939.1| polypeptide deformylase [Bartonella henselae str. Houston-1] gi|81696215|sp|Q6G5F0|DEF_BARHE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|49237703|emb|CAF26892.1| Polypeptide deformylase [Bartonella henselae str. Houston-1] Length = 176 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 87/164 (53%), Positives = 123/164 (75%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PDPILR +S+P+E I+S + L D+MLE MY G+GLAA+QIG+ R++V Sbjct: 1 MPMRPLVIVPDPILREISKPVEYIDSAVQKLADDMLETMYHAQGVGLAAIQIGIPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + +KNP+V INP+++ SD+ ++Y+EGCLSIP+Y A+V+R + VRY + + Sbjct: 61 LDVSRNDEQKNPLVIINPEVLWLSDERNIYKEGCLSIPEYFAEVERPKRLCVRYQNREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I AD LLATCLQHE+DHLNG LFID+LS++KRDM+ +K K Sbjct: 121 QTEIEADDLLATCLQHEIDHLNGRLFIDYLSKIKRDMVIRKFKK 164 >gi|307294614|ref|ZP_07574456.1| peptide deformylase [Sphingobium chlorophenolicum L-1] gi|306879088|gb|EFN10306.1| peptide deformylase [Sphingobium chlorophenolicum L-1] Length = 176 Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 93/167 (55%), Positives = 120/167 (71%), Gaps = 7/167 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PDP LR +S P+E I++D+ LID+MLE MY GIGLAA+Q+GV R++VIDLQ Sbjct: 5 PILEAPDPRLRTISSPVEAIDADLQRLIDDMLETMYDAPGIGLAAIQVGVPKRVLVIDLQ 64 Query: 65 -------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D K PMVFINP+I+ S+D SVY EGCLS+PD A+V+R A I +MD Sbjct: 65 EPESDEEDAPPVKKPMVFINPEILEGSEDLSVYNEGCLSVPDQFAEVERPASIRASWMDR 124 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K Sbjct: 125 DGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTK 171 >gi|158422422|ref|YP_001523714.1| polypeptide or peptide deformylase family protein [Azorhizobium caulinodans ORS 571] gi|158329311|dbj|BAF86796.1| polypeptide or peptide deformylase family protein [Azorhizobium caulinodans ORS 571] Length = 172 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 86/160 (53%), Positives = 117/160 (73%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++I P+P LR++S P+ +I+ +I L +MLE MY GIGLAA+Q+GV R++ ID+ Sbjct: 5 PILIIPEPQLRQISAPVPRIDKEIEKLAADMLETMYDAPGIGLAAIQVGVHKRVITIDIA 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 KNP+V INP++++ S++ S Y EGCLSIP+Y +V+R A +TVRY D I Sbjct: 65 REDAPKNPIVLINPEVVSASEETSFYNEGCLSIPEYYEEVERPAQVTVRYQDLKGATHEI 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLATCLQHE+DHLNG+LFIDHLSRLKR+ + KK +K Sbjct: 125 AADGLLATCLQHEIDHLNGVLFIDHLSRLKRERVIKKFTK 164 >gi|319406474|emb|CBI80115.1| polypeptide deformylase [Bartonella sp. 1-1C] Length = 176 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 91/167 (54%), Positives = 122/167 (73%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K LVI PDPILR VS+P+E+I+ I L D+MLE MY+ GIGLAAVQ+GV R++V+D+ Sbjct: 4 KSLVILPDPILREVSKPVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLVVDI 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 KNP+V INP+I+ SD+ SVY+EGCLSIPDY A+V+R + + Y D + Sbjct: 64 HPKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLCMCYRDREGKQVE 123 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K K ++++ Sbjct: 124 IEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170 >gi|328545268|ref|YP_004305377.1| peptide deformylase 1 [polymorphum gilvum SL003B-26A1] gi|326415010|gb|ADZ72073.1| Peptide deformylase 1 [Polymorphum gilvum SL003B-26A1] Length = 172 Score = 189 bits (481), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 89/164 (54%), Positives = 119/164 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++I PDP+LR+ P+ K++ I L D+MLE MY+ GIGLAA QIGVL RL V Sbjct: 1 MTKRDILIIPDPVLRQHCEPVVKVDDAIRKLADDMLETMYAAPGIGLAASQIGVLKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + PMVFINP+I+ S++ SVYQEGCLSIP+Y +V+R A + VR+ + + Sbjct: 61 LDVAKEDQPRAPMVFINPEIVWASEEMSVYQEGCLSIPEYYEEVERPASVRVRFFNRDGD 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + ADGLLATC+QHE DHLNG LFID+LS+LKRD + KK +K Sbjct: 121 EQELQADGLLATCIQHEYDHLNGRLFIDYLSKLKRDRVVKKFAK 164 >gi|163867376|ref|YP_001608570.1| peptide deformylase [Bartonella tribocorum CIP 105476] gi|189083066|sp|A9ILK4|DEF_BART1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|161017017|emb|CAK00575.1| polypeptide deformylase [Bartonella tribocorum CIP 105476] Length = 178 Score = 187 bits (476), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 88/166 (53%), Positives = 123/166 (74%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + LV PDPILR VS+P+E++++ + L D+MLE MY GIGLAA+QIG+ R++V Sbjct: 1 MPMRSLVTLPDPILREVSKPVEQVDTALQELADDMLETMYHAKGIGLAAIQIGIPLRMLV 60 Query: 61 IDLQDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+ +A +K P+V INP+I+ SD+ +VY+EGCLSIPDY A+V+R + VRY + Sbjct: 61 IDVSGNAEDTQKKPLVIINPEILWLSDERNVYKEGCLSIPDYFAEVERPKRLRVRYQNRE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + I AD LLATCLQHE+DHL+G LFID++SR+KRDM+ +K K Sbjct: 121 GKQKEIEADDLLATCLQHEIDHLDGRLFIDYISRIKRDMVIRKFKK 166 >gi|319404989|emb|CBI78592.1| polypeptide deformylase [Bartonella sp. AR 15-3] Length = 171 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 87/161 (54%), Positives = 118/161 (73%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 KPLVI PDPILR VS+P+E I+ I L D+MLE MY+ G+GLAAVQ+G+ R++V+D+ Sbjct: 4 KPLVILPDPILREVSKPVEHIDPIIQKLADDMLETMYNAQGVGLAAVQVGIPLRMLVVDI 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 KN +V INP+I+ SD+ SVY+EGCLSIP+Y A+V+R + + Y + + + Sbjct: 64 SPKDAPKNSLVVINPEILWISDERSVYREGCLSIPEYFAEVERPKCLRISYKNREGKQEE 123 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K K Sbjct: 124 IEANDLLATCLQHEIDHLNGYLFIDHISKTKRDMVIRKFKK 164 >gi|323135726|ref|ZP_08070809.1| peptide deformylase [Methylocystis sp. ATCC 49242] gi|322398817|gb|EFY01336.1| peptide deformylase [Methylocystis sp. ATCC 49242] Length = 188 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 86/164 (52%), Positives = 119/164 (72%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PDP LR+VS P+E+I+++I L+D+MLE MY+ GIGLAA+Q+ V R+VV+D+ Sbjct: 5 PIITLPDPRLRKVSEPVERIDAEIHRLLDDMLETMYAAPGIGLAAIQVAVAKRIVVVDIG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++P+ INP+II S++ S YQEGCLS+PDY DVKR A + VR++D + Q Q Sbjct: 65 KTEDERSPLFLINPEIIWASEELSSYQEGCLSVPDYFDDVKRPAMVKVRHLDRHGQTQEF 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A GLLAT +QHEL+HL G LFID+LSRLKR+ + KK SK + Sbjct: 125 DAVGLLATVVQHELEHLEGGLFIDNLSRLKRERVVKKFSKAARF 168 >gi|294012439|ref|YP_003545899.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S] gi|292675769|dbj|BAI97287.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S] Length = 176 Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 91/167 (54%), Positives = 118/167 (70%), Gaps = 7/167 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PDP LR +S P+E I+ D+ LID+M E MY GIGLAA+Q+GV R++VIDLQ Sbjct: 5 PILEAPDPRLRTISSPVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRVLVIDLQ 64 Query: 65 DHAHR-------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + K PMVFINP+I+ S+D SVY EGCLS+PD A+V+R A I +MD Sbjct: 65 EPESDEEGAPPVKKPMVFINPEILDGSEDLSVYNEGCLSVPDQFAEVERPASIRASWMDR 124 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K Sbjct: 125 DGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTK 171 >gi|319403561|emb|CBI77143.1| polypeptide deformylase [Bartonella rochalimae ATCC BAA-1498] Length = 176 Score = 186 bits (473), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 90/167 (53%), Positives = 121/167 (72%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K LVI PDPILR VS+ +E+I+ I L D+MLE MY+ GIGLAAVQ+GV R++V+D+ Sbjct: 4 KSLVILPDPILREVSKLVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLVVDI 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 KNP+V INP+I+ SD+ SVY+EGCLSIPDY A+V+R + + Y D + Sbjct: 64 HSKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLRMCYRDREGKQVE 123 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K K ++++ Sbjct: 124 IEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170 >gi|332185304|ref|ZP_08387053.1| peptide deformylase [Sphingomonas sp. S17] gi|332015028|gb|EGI57084.1| peptide deformylase [Sphingomonas sp. S17] Length = 173 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 85/166 (51%), Positives = 119/166 (71%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PDP LR VS+P+E ++ + L+ +M+E MY GIGLAA+Q+GV R++VIDLQ Sbjct: 5 PIVEVPDPRLRLVSKPVEAVDDSVRQLVTDMIETMYDAHGIGLAAIQVGVDKRVLVIDLQ 64 Query: 65 DHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + KNP +INP+I++ S++ S Y EGCLSIP+ A+VKR A V+++D Sbjct: 65 EEEDEEGKPVKNPKAYINPEILSVSEELSTYNEGCLSIPEQYAEVKRPARCQVKWLDEKG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + DGLLATC+QHE+DHLNG+LFIDH+SRLKRDM+ +K+SK+ Sbjct: 125 EAHEAEFDGLLATCMQHEMDHLNGVLFIDHVSRLKRDMLMRKLSKI 170 >gi|209886650|ref|YP_002290507.1| peptide deformylase [Oligotropha carboxidovorans OM5] gi|229487488|sp|B6JJP8|DEF_OLICO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|209874846|gb|ACI94642.1| peptide deformylase [Oligotropha carboxidovorans OM5] Length = 171 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 84/168 (50%), Positives = 117/168 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD LRRVS P+EKI S++ L ++M E MY GIGLAA+Q+ V RL+ Sbjct: 1 MAIREIISIPDKRLRRVSEPVEKITSEVRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P VFINP+I++ S+D +VY+EGCLSIP+Y +V+R A + VR+MD + Sbjct: 61 MDLAKKEGESAPRVFINPEILSKSEDIAVYEEGCLSIPEYYEEVERPASVRVRFMDLEGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K +L Sbjct: 121 VHEEDAEGLFATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKL 168 >gi|240849749|ref|YP_002971137.1| polypeptide deformylase [Bartonella grahamii as4aup] gi|240266872|gb|ACS50460.1| polypeptide deformylase [Bartonella grahamii as4aup] Length = 178 Score = 184 bits (466), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 86/166 (51%), Positives = 122/166 (73%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + LV PDPILR VS+P+++++S + L D+MLE MY+ GIGLAA+QIG+ R++V Sbjct: 1 MPMRSLVTLPDPILREVSKPVDQVDSALQKLADDMLETMYNAKGIGLAAIQIGIPLRMLV 60 Query: 61 IDLQDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+ ++ RK P V INP+I+ SD+ ++Y+EGCLSIPDY A+V+R + VRY + Sbjct: 61 IDVSGNSEDERKKPFVIINPEILWLSDERNIYKEGCLSIPDYFAEVERPKRLCVRYQNRE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I AD LLATCLQHE+DHL+G LFID++S++KRDM+ +K K Sbjct: 121 GKQTEIEADDLLATCLQHEIDHLDGRLFIDYISKIKRDMVIRKFKK 166 >gi|23009516|ref|ZP_00050535.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 171 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 86/167 (51%), Positives = 114/167 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR +S P+E + +I L +M+E MY G+GLAA+QIGV R+V Sbjct: 1 MTVRPLVILPDAQLRLISEPVEAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVPKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID KNP V++NP+I+ S++ VY EGCLSIP++ +V+R + VRYM + + Sbjct: 61 IDTSKDETAKNPTVYLNPEIVWASEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK SK + Sbjct: 121 TVEREADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFSKAAK 167 >gi|94495737|ref|ZP_01302317.1| polypeptide deformylase [Sphingomonas sp. SKA58] gi|94425125|gb|EAT10146.1| polypeptide deformylase [Sphingomonas sp. SKA58] Length = 176 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 91/171 (53%), Positives = 119/171 (69%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ PDP LR +S ++ I+ D+ LID+M + MY GIGLAA+Q+GV R++V Sbjct: 1 MAIRPILEAPDPRLRTISTRVDAIDDDLQTLIDDMFDTMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDLQDHAHR-------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 IDLQ+ KNPMVFINP+I+ SDD SVY EGCLS+PD A+V+R + I Sbjct: 61 IDLQEPESDEEGAPPVKNPMVFINPEILKGSDDLSVYNEGCLSVPDQFAEVERPSVIRAS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +MD + +GLLATCLQHE+DHL GILFIDHLSRLKRDM+ KK++K Sbjct: 121 WMDREGRIHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRDMLMKKLNK 171 >gi|170749551|ref|YP_001755811.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] gi|170656073|gb|ACB25128.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] Length = 171 Score = 183 bits (465), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 85/167 (50%), Positives = 116/167 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PDP+LR S P+ I ++I L+ +M E MY G+GLAA+QIGV R+V Sbjct: 1 MTIRPLVILPDPVLRLGSEPVGPITAEIRTLVADMFETMYDAPGVGLAAIQIGVPKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID ++ VFINP+I+ S++ VY EGCLSIPDY A+V+R + V++ D + Sbjct: 61 IDTSKEEGVRDARVFINPEIVWSSEEKRVYDEGCLSIPDYYAEVERPDRVRVKFRDLDGT 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I ADGLL+TC+QHE+DHLNG+LFIDHLS+LKRD + KK +K + Sbjct: 121 EREIEADGLLSTCIQHEIDHLNGVLFIDHLSKLKRDRVIKKFTKAAK 167 >gi|296447194|ref|ZP_06889124.1| peptide deformylase [Methylosinus trichosporium OB3b] gi|296255253|gb|EFH02350.1| peptide deformylase [Methylosinus trichosporium OB3b] Length = 179 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 86/164 (52%), Positives = 113/164 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ PDP LR VS P+ I+++I L+D+MLE MY G+GLAA+Q+ V R++V Sbjct: 1 MAIRPIITLPDPRLRLVSEPVAVIDAEIRQLLDDMLETMYDAPGVGLAAIQVAVAKRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D KNPMVFINP+I+ S++ VYQEGCLS+PDY +V+R A + V ++D Sbjct: 61 ADATRGDEPKNPMVFINPQIVWASEELGVYQEGCLSVPDYFEEVQRPARVRVSFLDREGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I ADGLLAT LQHE+DHL G LFIDHLSRLKR+ + KK K Sbjct: 121 TCEIEADGLLATVLQHEIDHLEGGLFIDHLSRLKRERVVKKFVK 164 >gi|163851063|ref|YP_001639106.1| peptide deformylase [Methylobacterium extorquens PA1] gi|218529893|ref|YP_002420709.1| peptide deformylase [Methylobacterium chloromethanicum CM4] gi|240138197|ref|YP_002962669.1| peptide deformylase [Methylobacterium extorquens AM1] gi|254560757|ref|YP_003067852.1| peptide deformylase [Methylobacterium extorquens DM4] gi|163662668|gb|ABY30035.1| peptide deformylase [Methylobacterium extorquens PA1] gi|218522196|gb|ACK82781.1| peptide deformylase [Methylobacterium chloromethanicum CM4] gi|240008166|gb|ACS39392.1| peptide deformylase [Methylobacterium extorquens AM1] gi|254268035|emb|CAX23906.1| peptide deformylase [Methylobacterium extorquens DM4] Length = 171 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 85/167 (50%), Positives = 114/167 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR S P+ + +I L +M+E MY G+GLAA+QIGV R+V Sbjct: 1 MTVRPLVILPDAQLRLTSEPVAAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + KNP V++NP+I+ S++ VY EGCLSIP++ +V+R + VRYM+ + Q Sbjct: 61 IDTSKDENAKNPTVYLNPEIVWVSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMNLDGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K + Sbjct: 121 IVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167 >gi|188580852|ref|YP_001924297.1| peptide deformylase [Methylobacterium populi BJ001] gi|179344350|gb|ACB79762.1| peptide deformylase [Methylobacterium populi BJ001] Length = 171 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 84/167 (50%), Positives = 114/167 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR +S P+ + +I L +M+E MY G+GLAA+QIGV R+V Sbjct: 1 MTVRPLVILPDAQLRLISEPVGTVTEEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + KNP V++NP+I+ S++ VY EGCLSIP++ +V+R + VRYM + + Sbjct: 61 IDTSKDENAKNPTVYLNPEIVWSSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K + Sbjct: 121 TVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167 >gi|330813514|ref|YP_004357753.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063] gi|327486609|gb|AEA81014.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063] Length = 170 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 80/155 (51%), Positives = 112/155 (72%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PDPILR+ S P++++N +I L+ NMLE MY+ GIGLAAVQ+G+L R++VID+ Sbjct: 10 PDPILRKKSLPVKEVNGEIKKLMKNMLETMYAAPGIGLAAVQVGILKRIIVIDISGETSL 69 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 K P+ F+NPKI+ SD QEGCLSIP + ++KR V+Y+D + + + + ADGL Sbjct: 70 KKPIFFVNPKIVWKSDILETKQEGCLSIPGHFGNIKRPEACHVKYLDYSGKEKTLKADGL 129 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LATC+QHE+DH NG LFID+LS+LK+ I KK++K Sbjct: 130 LATCIQHEIDHCNGTLFIDYLSKLKKAFIIKKLTK 164 >gi|304320578|ref|YP_003854221.1| peptide deformylase [Parvularcula bermudensis HTCC2503] gi|303299480|gb|ADM09079.1| peptide deformylase [Parvularcula bermudensis HTCC2503] Length = 170 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 81/164 (49%), Positives = 115/164 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V PDP LR +S P++ ++ ++ L+D+MLE MY+ GIGLAA+QIGV R++V Sbjct: 1 MTIRPIVTAPDPRLREISTPVDGVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P F+NP I + D + YQEGCLS+PDY +++R A TV Y+D + Sbjct: 61 MDLAGEGEPPAPRYFVNPVIRNPATDLAPYQEGCLSVPDYYEEIERPATCTVDYLDYDGT 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A+GLLATC+QHE+DHL G+LFIDHLSRLKR+ I KK+ + Sbjct: 121 PRTLEAEGLLATCIQHEMDHLEGVLFIDHLSRLKRERILKKLKR 164 >gi|310815113|ref|YP_003963077.1| peptide deformylase [Ketogulonicigenium vulgare Y25] gi|308753848|gb|ADO41777.1| peptide deformylase [Ketogulonicigenium vulgare Y25] Length = 173 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 83/169 (49%), Positives = 116/169 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP LR +++P+ I+ +I L D+MLE MY GIGLA Q+G L R++V Sbjct: 1 MTTRPILIHPDPRLRAIAKPLPDISDEIRRLADDMLETMYDAPGIGLAGPQVGQLQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P+V +NP+I+ SDD SVY+EGCLSIPD A+V+R A + VR++D N Sbjct: 61 LDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGCLSIPDQYAEVERPASVKVRWLDLNGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q +GL ATC+QHE+DHL+G LFID+L +KR +IT+KM KL + R Sbjct: 121 EQDREMEGLWATCVQHEIDHLDGKLFIDYLGPMKRQLITRKMEKLKRER 169 >gi|260426170|ref|ZP_05780149.1| peptide deformylase [Citreicella sp. SE45] gi|260420662|gb|EEX13913.1| peptide deformylase [Citreicella sp. SE45] Length = 176 Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 86/170 (50%), Positives = 121/170 (71%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L+++ P+ ++ D+ L D+MLE MY GIGLAA Q+G+L+RL+V+ Sbjct: 4 MKRPILIHPDPRLKKLCDPVADLSDDLRTLADDMLETMYDAPGIGLAAPQVGILHRLIVL 63 Query: 62 DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D QD+ P+V INP+I+ SD+ SVY+EGCLSIPD ADV+R + V ++D + Sbjct: 64 DCAKQDNGETPRPLVMINPRILASSDERSVYEEGCLSIPDQYADVERPKMVEVEWLDRDG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 124 KLQKEEFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRER 173 >gi|121602173|ref|YP_989567.1| peptide deformylase [Bartonella bacilliformis KC583] gi|158513863|sp|A1UUB4|DEF_BARBK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|120614350|gb|ABM44951.1| peptide deformylase [Bartonella bacilliformis KC583] Length = 182 Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 83/167 (49%), Positives = 120/167 (71%), Gaps = 6/167 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 KPLVI PDPILR +S+P+E I+S I L D+MLE MY+ GIGLAA+Q+G+ R++V+D+ Sbjct: 4 KPLVILPDPILREISKPVEHIDSTIQQLADDMLETMYNAGGIGLAAIQVGIPLRMLVVDV 63 Query: 64 Q------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + ++P++ INP+I+ SD+ ++ EGCLSIP Y A+V+R + +RY + Sbjct: 64 SIFTSIFEPDAPQDPIIVINPEILWLSDERNICMEGCLSIPGYSAEVERPKRLCIRYRNR 123 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + I AD +LATCLQHE+DHLNG LFIDHLS++KR+M+ +K K Sbjct: 124 EGEQKEIEADNILATCLQHEIDHLNGCLFIDHLSKVKRNMVIRKFEK 170 >gi|182677492|ref|YP_001831638.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633375|gb|ACB94149.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] Length = 193 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 9/176 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP+LRRV P+ ++S+I L+D+MLE MY GIGLAA QI V+ R++V Sbjct: 1 MALRSIITIPDPLLRRVCDPVADVDSEIRRLMDDMLETMYDAPGIGLAASQIAVMKRVIV 60 Query: 61 IDL------QDHAHR---KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +D+ +D A P+ NP+I+ S++ S Y+EGCLSIPDY +V R A + Sbjct: 61 MDVAKRRKGEDGAEADVAPQPLALANPEILWASEELSTYEEGCLSIPDYYEEVVRPARVR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 V Y+D Q Q + ADG+LATC+QHE+DHLNG+LFIDH+SRLKR+ I KK SK + Sbjct: 121 VGYLDRQGQRQELEADGILATCVQHEIDHLNGVLFIDHISRLKRERIVKKFSKAAK 176 >gi|103485746|ref|YP_615307.1| peptide deformylase [Sphingopyxis alaskensis RB2256] gi|98975823|gb|ABF51974.1| peptide deformylase [Sphingopyxis alaskensis RB2256] Length = 180 Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 86/169 (50%), Positives = 116/169 (68%), Gaps = 8/169 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PDP LR +S+P+E ++++ L+ +M E MY GIGLAA+Q+GV R++VIDLQ Sbjct: 8 PIIETPDPRLRVISKPVETFDAELKQLVADMFETMYDAPGIGLAAIQVGVPKRILVIDLQ 67 Query: 65 DHAHR--------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + P VFINP FSD+ SVYQEGCLS+P+ ADV R A +TV + D Sbjct: 68 EADPEDPEGKKVIRTPRVFINPVFSDFSDEHSVYQEGCLSVPEQYADVTRPAEVTVDWQD 127 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + +H GL+ATC+QHE DHL GILFIDHLSRLKR+M+ KK++KL Sbjct: 128 EDGKHHQERMTGLMATCIQHEHDHLEGILFIDHLSRLKREMVLKKLAKL 176 >gi|299132603|ref|ZP_07025798.1| peptide deformylase [Afipia sp. 1NLS2] gi|298592740|gb|EFI52940.1| peptide deformylase [Afipia sp. 1NLS2] Length = 189 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 83/168 (49%), Positives = 117/168 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD LR VS P++KI +I L ++M E MY GIGLAA+Q+ V RL+ Sbjct: 19 MAIREIISIPDKRLRLVSEPVDKITPEIRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 78 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P VFINP+I++ SDD SVY+EGCLSIP+Y +V+R A + +RYMD + + Sbjct: 79 MDVSKKEGEKVPRVFINPEILSKSDDVSVYEEGCLSIPEYYEEVERPASVRIRYMDLDGK 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GL ATC+QHE+DH+NG+LFID+LS+LKRD + KK +K +L Sbjct: 139 VHEEDAEGLFATCIQHEIDHINGVLFIDYLSKLKRDRVMKKFTKAAKL 186 >gi|300024230|ref|YP_003756841.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888] gi|299526051|gb|ADJ24520.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888] Length = 171 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 78/163 (47%), Positives = 117/163 (71%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PDP+LR++S P+E+++ ++ L+D+MLE MY GIGLAAVQ+GVL R++V+D Sbjct: 5 PIITIPDPVLRKISDPVERVDDAVVKLMDDMLETMYDAPGIGLAAVQVGVLKRVLVVDAA 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + NP+ NP+++ +++EGCLSIPD +++R A +TVRY+D + + Q + Sbjct: 65 EDGAPHNPIAMANPELVALGSTTRLHEEGCLSIPDVHVEIERPASVTVRYIDRHGKEQEL 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+GLLAT +QHELDHL+G L ID LSRLKRDM+ +K K V+ Sbjct: 125 AAEGLLATAVQHELDHLDGQLIIDFLSRLKRDMVIRKFKKQVR 167 >gi|260432735|ref|ZP_05786706.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] gi|260416563|gb|EEX09822.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] Length = 172 Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 87/165 (52%), Positives = 118/165 (71%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V P++ ++ ++ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRNILIHPDPRLKKVCAPVDDLSDELRALADDMLETMYDAPGIGLAAPQIGVLERLIVL 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +++ P+V NP+II+ SD+ SVY+EGCLSIPD A+V R A + V +MD N + Sbjct: 61 DCVKEEGATPRPLVMFNPEIISASDETSVYEEGCLSIPDQFAEVTRPAEVEVAWMDQNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q DGL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKL 165 >gi|288959246|ref|YP_003449587.1| peptide deformylase [Azospirillum sp. B510] gi|288911554|dbj|BAI73043.1| peptide deformylase [Azospirillum sp. B510] Length = 170 Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 78/165 (47%), Positives = 122/165 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P+++ P PIL+R ++P+ ++++ ++ L+D+M+E MY GIGLAA Q+GVL R++V Sbjct: 1 MARLPILVAPHPILKRKAQPVAEVDARVVKLMDDMVETMYDAAGIGLAAPQVGVLDRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + NP+ NP+II S+D +V +EGCLS+P+ A+V R + VRY+D Q Sbjct: 61 VDVHEKGEPPNPIRLANPEIIWSSEDKAVCEEGCLSVPEQYAEVTRPQRVRVRYLDERNQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q I A+G+LATCLQHE+DHLNG+LF+D+LS LKR+++ KK+ K+ Sbjct: 121 PQEIEAEGMLATCLQHEIDHLNGVLFVDYLSMLKRNILLKKVQKM 165 >gi|298290074|ref|YP_003692013.1| peptide deformylase [Starkeya novella DSM 506] gi|296926585|gb|ADH87394.1| peptide deformylase [Starkeya novella DSM 506] Length = 182 Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 128/178 (71%), Gaps = 8/178 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR +S PI ++++ + ++++M E MY GIGLAAVQ+G+ R++ Sbjct: 1 MSIRPLVIIPDSRLRLISDPIVRVDARVRAIVEDMFETMYDAPGIGLAAVQVGIPERIIT 60 Query: 61 IDL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+ + +KNP+ INP+II+ S++ SVY EGCLSIP+Y ADV+R A + V Sbjct: 61 VDVVRREEGEEEGAEEKKNPIALINPEIISSSEEISVYSEGCLSIPEYYADVERPARVKV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 RYMD N + Q I ADGLLATC+QHE+DHLNG+LFIDH+S+LKRD + KK +K+ + ++ Sbjct: 121 RYMDLNGETQEIDADGLLATCVQHEIDHLNGVLFIDHISKLKRDRVMKKFTKIAKEKE 178 >gi|218510166|ref|ZP_03508044.1| peptide deformylase [Rhizobium etli Brasil 5] Length = 133 Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 78/131 (59%), Positives = 102/131 (77%) Query: 39 MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98 MY GIGLAA+QIGV R++VID+ K P VFINP+I+ SD+ SVY+EGCLSIP Sbjct: 1 MYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIP 60 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 DY A+V+R A ++V+Y+D N + Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ Sbjct: 61 DYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMV 120 Query: 159 TKKMSKLVQLR 169 KK +K + + Sbjct: 121 IKKFTKAAKSK 131 >gi|296284446|ref|ZP_06862444.1| peptide deformylase [Citromicrobium bathyomarinum JL354] Length = 190 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 21/186 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++ PDP L+ VS+P+E + + D+ L+D+M E MY+ +GIGLAA+Q+GV R+ Sbjct: 1 MAIREILEVPDPRLKTVSQPVEAGEFDDDLRTLVDDMFETMYAANGIGLAAIQVGVPKRI 60 Query: 59 VVIDLQ-----------DH--------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 +VIDLQ DH A +K P VFINP+I+ +++ + YQEGCLS+PD Sbjct: 61 LVIDLQPEDPDAEPIECDHDGHKHTHPATKKEPRVFINPEILDPNEELATYQEGCLSVPD 120 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 ADV R A TVR+ D + + +GLLATC+QHE+DHL GILFIDHLSRLKR M Sbjct: 121 IYADVDRPATCTVRWKDLDGKEHTEAMEGLLATCIQHEMDHLEGILFIDHLSRLKRQMAL 180 Query: 160 KKMSKL 165 KK+ KL Sbjct: 181 KKLKKL 186 >gi|91762408|ref|ZP_01264373.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002] gi|91718210|gb|EAS84860.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002] Length = 172 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 81/169 (47%), Positives = 120/169 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++ P+ +LR++S+P+E + + L+D+ML+ MY+ GIGLAA+QIGV R++V Sbjct: 1 MSVKPILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +K P F+NP I +D S Y+EGCLS+PD A+++R V Y+D N + Sbjct: 61 MDISRDEDKKEPRYFVNPLIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+ R Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169 >gi|87200909|ref|YP_498166.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444] gi|123763380|sp|Q2G491|DEF_NOVAD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|87136590|gb|ABD27332.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444] Length = 188 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 85/184 (46%), Positives = 120/184 (65%), Gaps = 19/184 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L++VS P+EK + ++ L+++M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAIREIIEVPDPRLKQVSVPVEKFDDELKTLVEDMFETMYDAPGIGLAAIQVGVPLRVLV 60 Query: 61 IDLQD-------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 IDLQ +K P VFINP+I+ S+++SVYQEGCLS+P+ Sbjct: 61 IDLQPDDPDAEPVACDHDGHHHHHQPTKKEPRVFINPEILDPSEEYSVYQEGCLSVPEIY 120 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 A+V+R A I R+ D + + +GL+ATCLQHE+DHL G+LFIDHLSRLKR+M KK Sbjct: 121 AEVERPATIRARWQDLDGKVHEEQMEGLMATCLQHEMDHLEGVLFIDHLSRLKRNMALKK 180 Query: 162 MSKL 165 + KL Sbjct: 181 LEKL 184 >gi|254473716|ref|ZP_05087111.1| peptide deformylase [Pseudovibrio sp. JE062] gi|211957102|gb|EEA92307.1| peptide deformylase [Pseudovibrio sp. JE062] Length = 175 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 88/170 (51%), Positives = 113/170 (66%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+ LR PIE IN +I L D+ML+ MY GIGLAA QIGV+ R+ V Sbjct: 1 MTIREIKFVPEACLREKCAPIEDINDEIRTLADDMLQTMYDAPGIGLAASQIGVMKRMFV 60 Query: 61 IDL------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +D+ +D + K PMVFINP+I S++ + YQEGCLSIP DV+R A + V + Sbjct: 61 LDVAERESEEDDSVEKEPMVFINPEITWSSEEKNTYQEGCLSIPGIYEDVERPAEVRVSF 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ + Q I A GLLATC+QHELDHLNG+LFID+LSRLKRD I KKM K Sbjct: 121 LNIEGEKQEIEAGGLLATCIQHELDHLNGVLFIDYLSRLKRDRIVKKMIK 170 >gi|27383220|ref|NP_774749.1| peptide deformylase [Bradyrhizobium japonicum USDA 110] gi|39930882|sp|Q89BN9|DEF_BRAJA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|27356394|dbj|BAC53374.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110] Length = 174 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 82/171 (47%), Positives = 117/171 (68%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VS+PIEK+ ++I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKQLRLVSKPIEKVTTEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60 Query: 61 IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL ++ + P VFINP++I S++ SVY+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLAKRDENGETKPEPRVFINPEVIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK K + Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEKAAK 171 >gi|217977312|ref|YP_002361459.1| peptide deformylase [Methylocella silvestris BL2] gi|254767594|sp|B8ENG6|DEF_METSB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|217502688|gb|ACK50097.1| peptide deformylase [Methylocella silvestris BL2] Length = 196 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 83/171 (48%), Positives = 120/171 (70%), Gaps = 3/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PD LR V+RP+ ++S++ L+D+MLE MY GIGLAA QI V R++V Sbjct: 1 MPLRPIIILPDKRLRLVARPVASVDSEVRALMDDMLETMYEAPGIGLAATQIAVDRRVIV 60 Query: 61 IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +D+ +D + + +P+ NP+I+ S++ S Y+EGCLSIP++ +V R + V Y+D Sbjct: 61 LDVAKRRDDSAKADPICLANPEILWASEELSSYEEGCLSIPEFYEEVFRPEKVRVGYLDR 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + + I ADGLLATCLQHE+DHLNG+LFIDH+SRLKR I KK K +L Sbjct: 121 DGRRREIEADGLLATCLQHEIDHLNGVLFIDHISRLKRARIIKKFEKAAKL 171 >gi|84685501|ref|ZP_01013399.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654] gi|84666658|gb|EAQ13130.1| peptide deformylase [Rhodobacterales bacterium HTCC2654] Length = 173 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 83/170 (48%), Positives = 118/170 (69%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++I PDP L++ + + + +++ L D+MLE MY GIGLAA Q+GVL RL+V Sbjct: 1 MALKPILIHPDPRLKKEAEKVRDVTDELLTLADDMLETMYDAPGIGLAAPQVGVLQRLIV 60 Query: 61 ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D ++D + P+V NP++I SDD +VY+EGCLSIPD A+V R A + VR+++ Sbjct: 61 LDCIKDESAEPQPLVMFNPEVILSSDDTNVYEEGCLSIPDQYAEVTRPAAVKVRWLNRAG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q +GL ATC+QHE+DHLNG LFID+LS +KR MIT+K KL + R Sbjct: 121 EEQERDFEGLWATCVQHEIDHLNGKLFIDYLSPMKRQMITRKSQKLKRER 170 >gi|260752714|ref|YP_003225607.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552077|gb|ACV75023.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 177 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 85/170 (50%), Positives = 115/170 (67%), Gaps = 4/170 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PDP LR S +E + ++ LID+M E MY GIGLAA+Q+GV RL+VIDLQ Sbjct: 5 PILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLVIDLQ 64 Query: 65 ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++NPMVFINP++ ++ +Y EGCLS+PD A+V+R + I ++ D + Sbjct: 65 QPEEDGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQDRDGN 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K +LR+ Sbjct: 125 FHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174 >gi|154250717|ref|YP_001411541.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] gi|154154667|gb|ABS61884.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] Length = 173 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 79/155 (50%), Positives = 111/155 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L+ VS+P+E++++D+ L+D+MLE MY+ GIGLAA+QIGV +++V Sbjct: 1 MAIREIITAPDPRLKEVSKPVERVDADLRALMDDMLETMYAAPGIGLAAIQIGVPKQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P FINP+I+ S+D +VY+EGCLS+P++ DV+R A VRY+D + Sbjct: 61 MDLAREGEEPQPRYFINPEILWTSEDVAVYEEGCLSVPEFYEDVERPARCRVRYLDYQGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + D LLATCLQHE+DHL GILFIDHLSR KR Sbjct: 121 IREEECDDLLATCLQHEMDHLKGILFIDHLSRTKR 155 >gi|304392301|ref|ZP_07374242.1| peptide deformylase [Ahrensia sp. R2A130] gi|303295405|gb|EFL89764.1| peptide deformylase [Ahrensia sp. R2A130] Length = 193 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 122/181 (67%), Gaps = 18/181 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PDPILR S+ +E+++ ++ +D+M + MY GIGLAAVQ+G R+ V+D Sbjct: 5 PIVHLPDPILRVRSQEVERVDDELRKFLDDMADTMYDAPGIGLAAVQVGEPRRIFVVDCS 64 Query: 65 DH------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 + +++P+ INPKI+TFSD+ S+Y+EGCLSIPDY A+V+R Sbjct: 65 ERAEAEEEAEDDAPIRAEAVEEKRDPIFLINPKIVTFSDEPSMYEEGCLSIPDYYAEVER 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A + ++D + + Q + ADGLL+TC+QHE+DHL+G LFIDH+S+LK++M+ KK +K+ Sbjct: 125 PATCRIEFLDRDGKEQSLEADGLLSTCIQHEMDHLDGTLFIDHISKLKKNMVIKKFTKIA 184 Query: 167 Q 167 + Sbjct: 185 K 185 >gi|85713819|ref|ZP_01044809.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A] gi|85699723|gb|EAQ37590.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A] Length = 175 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 81/172 (47%), Positives = 117/172 (68%), Gaps = 4/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VSRPIEK+ +I L D+M E MY GIGLA +QI R++ Sbjct: 1 MAIREIIILPDKQLRLVSRPIEKVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60 Query: 61 IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL +D P +FINP+I++ S++ SVY+EGCLSIP+Y +V+R A + +R+ D Sbjct: 61 MDLARRDEDGELNPRPRIFINPEILSASEELSVYEEGCLSIPEYYEEVERPARVRIRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK +K +L Sbjct: 121 LDGKLHEEDAEGLFATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAKL 172 >gi|254456015|ref|ZP_05069444.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211] gi|207083017|gb|EDZ60443.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211] Length = 172 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 78/165 (47%), Positives = 117/165 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P+P+LR+VS+P++++ + L+D+MLE MY GIGLAA+Q+GV R++V Sbjct: 1 MTIKTIITEPNPLLRQVSKPVDQVGKEEQILMDDMLETMYDAPGIGLAAIQVGVPKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +K P F+NP I S Y+EGCLS+P+ A++ R + V Y+D + + Sbjct: 61 MDISKEEGKKEPRYFVNPVIKNKDSIKSTYEEGCLSVPNQFAEIDRPSKCEVEYLDYHGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SKL Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKL 165 >gi|148556945|ref|YP_001264527.1| peptide deformylase [Sphingomonas wittichii RW1] gi|166198523|sp|A5VDM3|DEF_SPHWW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148502135|gb|ABQ70389.1| peptide deformylase [Sphingomonas wittichii RW1] Length = 177 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 83/165 (50%), Positives = 113/165 (68%), Gaps = 5/165 (3%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PDP LR +S P+E ++ ++ LI +M E MY GIGLAA+Q+GV R++VIDLQ+ Sbjct: 10 PDPRLRTISTPVEAVDDELRALIADMFETMYDAPGIGLAAIQVGVPKRVLVIDLQEEEDA 69 Query: 70 -----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++P VFINP++ S++ SVY EGCLS+P+ A+V+R A I R++D Sbjct: 70 EGKPIRHPRVFINPELFDPSEEQSVYNEGCLSVPEQYAEVERPAVIHARWLDEQGAKHEE 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +GLLATCLQHE+DHL GILFIDHLSRLKR+M+ KK+ K + R Sbjct: 130 RLEGLLATCLQHEMDHLEGILFIDHLSRLKREMVMKKLEKARRAR 174 >gi|71083162|ref|YP_265881.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062] gi|123748062|sp|Q4FNG1|DEF_PELUB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71062275|gb|AAZ21278.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062] Length = 172 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 80/169 (47%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P+ +LR++S+P+E + + L+D+ML+ MY+ GIGLAA+QIGV R++V Sbjct: 1 MSVKSILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +K P F+NP I +D S Y+EGCLS+PD A+++R V Y+D N + Sbjct: 61 MDISRDEDKKEPRYFVNPVIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+ R Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169 >gi|197103839|ref|YP_002129216.1| polypeptide deformylase [Phenylobacterium zucineum HLK1] gi|238690164|sp|B4RDT8|DEF_PHEZH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|196477259|gb|ACG76787.1| polypeptide deformylase [Phenylobacterium zucineum HLK1] Length = 169 Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 113/156 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +++ P P L++VS+P+EK++ ++ L+D+MLE MY+ GIGLAA+QIGV R++V Sbjct: 1 MAIREILVVPHPALKQVSQPVEKVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL K P F+NP+I+ SDD + Y+EGCLS+P+Y +V+R A + +RY++ + Sbjct: 61 MDLAREGEEKQPRYFVNPEILWASDDTAPYEEGCLSVPEYYDEVERPARVKLRYLNYQGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 A+GL A C+QHE+DHL G+LFIDHLSRLKR+ Sbjct: 121 QVEEDAEGLFAVCIQHEMDHLEGVLFIDHLSRLKRE 156 >gi|56551709|ref|YP_162548.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4] gi|241762296|ref|ZP_04760377.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|81789136|sp|Q9REQ2|DEF_ZYMMO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|6685122|gb|AAF23793.1|AF213822_8 polypeptide deformylase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543283|gb|AAV89437.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4] gi|241373199|gb|EER62829.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 177 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/170 (49%), Positives = 114/170 (67%), Gaps = 4/170 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PDP LR S +E + ++ LID+M E MY GIGLAA+Q+GV RL+VIDLQ Sbjct: 5 PILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLVIDLQ 64 Query: 65 DHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++NPMVFINP++ ++ +Y EGCLS+PD A+V+R + I ++ D + Sbjct: 65 QPEEGGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQDRDGN 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K +LR+ Sbjct: 125 FHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174 >gi|84500579|ref|ZP_00998828.1| peptide deformylase [Oceanicola batsensis HTCC2597] gi|84391532|gb|EAQ03864.1| peptide deformylase [Oceanicola batsensis HTCC2597] Length = 172 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 81/167 (48%), Positives = 117/167 (70%), Gaps = 1/167 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID- 62 +P++I PDP L++V+ P+ I ++ D+MLE MY GIGLA QIG++ RL+V+D Sbjct: 3 RPILIHPDPRLKKVAEPVADITDELRTTADDMLETMYDAPGIGLAGPQIGLMARLIVLDC 62 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +++ P+V NP+++ SD+ SVY+EGCLSIPD A+V+R A +TV ++D + Q Sbjct: 63 VKEETLPPRPLVMFNPRVVASSDEKSVYEEGCLSIPDQYAEVERPAEVTVEWLDRDGVLQ 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DGL ATC+QHE+DHLNG LFID++S +KR MIT+KM KL + R Sbjct: 123 EESFDGLWATCVQHEIDHLNGKLFIDYISPIKRQMITRKMQKLKRER 169 >gi|89070116|ref|ZP_01157446.1| peptide deformylase [Oceanicola granulosus HTCC2516] gi|89044337|gb|EAR50480.1| peptide deformylase [Oceanicola granulosus HTCC2516] Length = 176 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 82/166 (49%), Positives = 114/166 (68%), Gaps = 1/166 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+P++I PDP L+ + P+ +I ++ L D+MLE MY GIGLAA Q+GVL R++V Sbjct: 4 MTKRPILIHPDPRLKTAATPVGEITDEVRRLADDMLETMYDAPGIGLAAPQVGVLKRVLV 63 Query: 61 ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D ++D P+V +P+I+ SD +VY+EGCLSIPD A+V+R A + VR+ D Sbjct: 64 MDCVKDEGEAPRPLVLCDPEIVWTSDARNVYEEGCLSIPDQYAEVERPAEVEVRWTDLEG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL Sbjct: 124 GARRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKL 169 >gi|254467295|ref|ZP_05080706.1| peptide deformylase [Rhodobacterales bacterium Y4I] gi|206688203|gb|EDZ48685.1| peptide deformylase [Rhodobacterales bacterium Y4I] Length = 182 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 85/169 (50%), Positives = 117/169 (69%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V + ++ D+ L D+MLE MY+ GIGLAA QIG+L RL+V+ Sbjct: 11 MKRPILIHPDPRLKKVCAAVPDLSDDLRVLADDMLETMYAAPGIGLAAPQIGILQRLIVL 70 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +++ P+V NP+II SD+ +VY+EGCLSIPD A+V R + V +MD + Sbjct: 71 DCVKEEDGDPRPLVMFNPEIIASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRSGN 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + R Sbjct: 131 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 179 >gi|149913450|ref|ZP_01901983.1| peptide deformylase [Roseobacter sp. AzwK-3b] gi|149812570|gb|EDM72399.1| peptide deformylase [Roseobacter sp. AzwK-3b] Length = 174 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/165 (50%), Positives = 115/165 (69%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V P+ ++ D+ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRPILIHPDPRLKKVCAPLGDLSDDLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVM 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP+I+ SD +VY+EGCLSIP+ A+VKR + VR++D + Sbjct: 61 DCVKGENETPRPLVMFNPEIVASSDVMNVYEEGCLSIPEEYAEVKRPEAVDVRWIDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q DGL ATC+QHE+DHLNG LFID+L +KR MIT++M KL Sbjct: 121 EQTETFDGLWATCVQHEIDHLNGKLFIDYLGPMKRQMITRRMQKL 165 >gi|85707836|ref|ZP_01038902.1| polypeptide deformylase [Erythrobacter sp. NAP1] gi|85689370|gb|EAQ29373.1| polypeptide deformylase [Erythrobacter sp. NAP1] Length = 190 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/188 (47%), Positives = 117/188 (62%), Gaps = 21/188 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++ PDP L+ VS P+ ++ N ++ L ++M E MY GIGLAA+Q+GV RL Sbjct: 1 MAIREILEVPDPRLKVVSEPVREDEFNDELKQLAEDMFETMYDAPGIGLAAIQVGVPKRL 60 Query: 59 VVIDLQ----------------DHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 +VIDLQ H H +K P VF+NP I+ +D+ S Y EGCLS+P+ Sbjct: 61 LVIDLQPDDPDAEPVECEHDGHKHTHPATKKEPRVFVNPVILDPADELSTYNEGCLSVPE 120 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 ADV R A TV+Y D + H +GLLATCLQHE+DHL GILFIDHLSRLKR+M Sbjct: 121 IYADVDRPATCTVKYQDLDGNHHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRNMAL 180 Query: 160 KKMSKLVQ 167 KK+ KL Q Sbjct: 181 KKLKKLRQ 188 >gi|89052957|ref|YP_508408.1| peptide deformylase [Jannaschia sp. CCS1] gi|88862506|gb|ABD53383.1| peptide deformylase [Jannaschia sp. CCS1] Length = 174 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P++I PDP L++V+ P+ + ++ L DNML MY GIGLAA Q+GV RL+V+ Sbjct: 1 MKLPILIHPDPRLKKVAAPVPDVTDELRALADNMLSTMYDAPGIGLAAPQVGVGQRLIVL 60 Query: 62 DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P+ NP++I SD+ + Y EGCLSIPD ADV R +TVR+MD N Sbjct: 61 DCEKGDDVTPRPLAMFNPEVIASSDEMNTYDEGCLSIPDIYADVTRPEAVTVRWMDVNGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL G LFID+LS LKR +IT+KM KL + R Sbjct: 121 EQEETFDGLWATCVQHEIDHLEGKLFIDYLSGLKRQLITRKMVKLKRDR 169 >gi|146337885|ref|YP_001202933.1| peptide deformylase [Bradyrhizobium sp. ORS278] gi|158514293|sp|A4YLB9|DEF_BRASO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146190691|emb|CAL74695.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium sp. ORS278] Length = 175 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 81/171 (47%), Positives = 117/171 (68%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VS+P+EK+ +I L+D+M + MY GIGLAA+Q+ R++ Sbjct: 1 MSLREIIILPDRQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60 Query: 61 IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL ++ P VFINP+II SD+ SVY+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLAKPDSGGETKREPRVFINPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K + Sbjct: 121 LDGVVREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAK 171 >gi|254429252|ref|ZP_05042959.1| peptide deformylase [Alcanivorax sp. DG881] gi|196195421|gb|EDX90380.1| peptide deformylase [Alcanivorax sp. DG881] Length = 168 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 79/165 (47%), Positives = 116/165 (70%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR V++P+EK++ ++ LID+M+E MY GIGLAA Q+ V RL+V Sbjct: 1 MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMIETMYDASGIGLAATQVNVHQRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P V+INP+I +D+ + Y+EGCLS+P + VKR+A + + +D + Sbjct: 61 MDLSEE--RNEPKVYINPQITPLTDELAPYEEGCLSVPGFYEKVKRAARVRINALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ Sbjct: 119 AFEVEADELLATCIQHEIDHLDGKLFVDYVSRLKRDRIKKKLEKI 163 >gi|148258522|ref|YP_001243107.1| peptide deformylase [Bradyrhizobium sp. BTAi1] gi|158513291|sp|A5ESQ7|DEF_BRASB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146410695|gb|ABQ39201.1| peptide deformylase [Bradyrhizobium sp. BTAi1] Length = 175 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 80/171 (46%), Positives = 117/171 (68%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VS+P+EK+ +I L+D+M + MY GIGLAA+Q+ R++ Sbjct: 1 MSLREIIILPDKQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60 Query: 61 IDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL ++ P VFINP+II SD+ S+Y+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLAKPDAGGETKREPRVFINPEIIAKSDELSIYEEGCLSIPEYYEEVERPARVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K + Sbjct: 121 LDGVLREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVLKKFTKAAK 171 >gi|91974563|ref|YP_567222.1| peptide deformylase [Rhodopseudomonas palustris BisB5] gi|123722270|sp|Q13F18|DEF_RHOPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|91681019|gb|ABE37321.1| peptide deformylase [Rhodopseudomonas palustris BisB5] Length = 175 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 77/169 (45%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ +I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ ++ + +P FINP+I+ S + +VY+EGCLSIP+Y ADV+R A + +RY D + Sbjct: 61 MDIVRKEGNGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYADVERPAVVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHL+G+LF+DHLS+LKR M+ +K K + Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLDGVLFVDHLSKLKRAMVVRKFEKAAK 169 >gi|108761299|ref|YP_629687.1| peptide deformylase [Myxococcus xanthus DK 1622] gi|108465179|gb|ABF90364.1| peptide deformylase [Myxococcus xanthus DK 1622] Length = 177 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 77/170 (45%), Positives = 116/170 (68%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV++ ++I+PDP+L++ ++P+ K++ L+ +M E MYS +G+GLAA QIGVL R++V Sbjct: 1 MVRE-ILIWPDPVLKQKAKPVAKVDDSTRTLVKDMFETMYSAEGVGLAAPQIGVLQRVIV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P+ INP+II D + Y EGCLSIP ADV R+A +TV+++D + Q Sbjct: 60 LDTTHSQPELKPVAMINPEIIAMEGD-TTYNEGCLSIPGEAADVDRAAVVTVKFLDPDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + DGLL+ +QHE DHLNG +F+DH+S LKR+ I K+M +L R+ Sbjct: 119 EQTLRCDGLLSIAVQHETDHLNGTVFVDHISSLKREFIRKRMKRLKTSRE 168 >gi|39933698|ref|NP_945974.1| peptide deformylase [Rhodopseudomonas palustris CGA009] gi|192289055|ref|YP_001989660.1| peptide deformylase [Rhodopseudomonas palustris TIE-1] gi|81698398|sp|Q6NC51|DEF_RHOPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229487564|sp|B3QCH1|DEF_RHOPT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|39647544|emb|CAE26065.1| putative N-formylmethionylaminoacyl-tRNA deformylase [Rhodopseudomonas palustris CGA009] gi|192282804|gb|ACE99184.1| peptide deformylase [Rhodopseudomonas palustris TIE-1] Length = 175 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ ++I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVTEVTTEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ ++ + +P FINP+I+ S + +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDIVRKEGDGKSDPRAFINPEIVGASSEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K K + Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169 >gi|75677243|ref|YP_319664.1| formylmethionine deformylase [Nitrobacter winogradskyi Nb-255] gi|74422113|gb|ABA06312.1| peptide deformylase [Nitrobacter winogradskyi Nb-255] Length = 187 Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 80/172 (46%), Positives = 114/172 (66%), Gaps = 4/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VSRPIE + +I L D+M E MY GIGLA +QI R+V Sbjct: 13 MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIVT 72 Query: 61 IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL ++ P VFINP+I++ S++ SVY+EGCLSIP+Y V+R + + +R+ D Sbjct: 73 MDLARRDEEGELTPRPRVFINPEILSASEELSVYEEGCLSIPEYYEAVERPSRVRIRFTD 132 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + A+GL ATC+QHE+DHLNG+LF+DHLS+LKRD + KK +K + Sbjct: 133 LDGKVHEEDAEGLFATCIQHEIDHLNGVLFVDHLSKLKRDRVMKKFTKAAKF 184 >gi|86747799|ref|YP_484295.1| peptide deformylase [Rhodopseudomonas palustris HaA2] gi|123099181|sp|Q2J2C6|DEF_RHOP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|86570827|gb|ABD05384.1| peptide deformylase [Rhodopseudomonas palustris HaA2] Length = 175 Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 75/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ +I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ ++ + +P FINP+I+ S + +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDIVRKEGNGKSDPRAFINPEIVGASAELNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGL ATC+QHE+DHLNG+LF+DH+S+LK+ M+ +K K + Sbjct: 121 GQVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKKAMVVRKFEKAAK 169 >gi|163738219|ref|ZP_02145635.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] gi|163743813|ref|ZP_02151186.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161382962|gb|EDQ07358.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161388835|gb|EDQ13188.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] Length = 172 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 83/169 (49%), Positives = 116/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V + ++ + L D+MLE MY+ GIGLAA QIGVL RL+V+ Sbjct: 1 MKRPILIHPDPRLKKVCAAVPDMSDALRTLADDMLETMYAAPGIGLAAPQIGVLDRLIVL 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +++ P+V NP+++ SD+ +VY+EGCLSIPD A+V R + V +MD + Sbjct: 61 DCVKEEDGPARPLVMFNPEVVASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + R Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|90422323|ref|YP_530693.1| peptide deformylase [Rhodopseudomonas palustris BisB18] gi|123089811|sp|Q21B62|DEF_RHOPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|90104337|gb|ABD86374.1| peptide deformylase [Rhodopseudomonas palustris BisB18] Length = 175 Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 75/169 (44%), Positives = 116/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+E +++++ L D+M E MY GIGLAA+Q+ RL+ Sbjct: 1 MALREIIIIPDKQLRLISKPVETVSAEVRRLADDMFETMYEAPGIGLAAIQVAQPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +DL ++ P FINP++I+ S++ +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDLVRKEGNSLTEPRAFINPEVISASEEMNVYEEGCLSIPEYYAEVERPKQVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHLNG+LF+DH+S+LKR M+ +K K + Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKRAMVMRKFEKAAK 169 >gi|92119150|ref|YP_578879.1| peptide deformylase [Nitrobacter hamburgensis X14] gi|122990031|sp|Q1QH78|DEF_NITHX RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|91802044|gb|ABE64419.1| peptide deformylase [Nitrobacter hamburgensis X14] Length = 175 Score = 169 bits (429), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 78/172 (45%), Positives = 115/172 (66%), Gaps = 4/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VSRPIE + +I L D+M E MY GIGLA +QI R++ Sbjct: 1 MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60 Query: 61 IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL ++ P +FINP+I++ S++ S Y+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLARRDEEGELTPRPRIFINPEILSASEELSTYEEGCLSIPEYYEEVERPARVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + A+G+ ATC+QHE+DHLNG+LF+DH+S+LKRD + KK +K +L Sbjct: 121 LDGKVHEEDAEGIYATCIQHEIDHLNGVLFVDHISKLKRDRVVKKFTKAAKL 172 >gi|83309342|ref|YP_419606.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum AMB-1] gi|82944183|dbj|BAE49047.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum AMB-1] Length = 190 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 114/160 (71%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PDP+L+ S+P+ ++ I L+ +ML+ MY GIGLAA QIGVL R++V+D+ Sbjct: 25 PILTAPDPVLKSKSKPVATVDDRIRTLLADMLDTMYHAPGIGLAAPQIGVLERVIVMDIG 84 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P+ +NP+I+ SD+ + Y+EGCLS+P++ ++V R A + VRY+D Q I Sbjct: 85 RKEEDRAPIRMVNPEIVWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGAKQEI 144 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLAT +QHE+DHL+GILFIDHLS LKR+MI +K+ K Sbjct: 145 LADGLLATVVQHEMDHLDGILFIDHLSSLKRNMILRKLLK 184 >gi|254510174|ref|ZP_05122241.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] gi|221533885|gb|EEE36873.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] Length = 172 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/165 (50%), Positives = 112/165 (67%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V P+ I D+ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRNILIHPDPRLKKVCAPVADITDDLRKLADDMLETMYDAPGIGLAAPQIGVLDRLIVV 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +++ P+V NP++I SD+ +VY+EGCLSIPD A+V R + V +MD + Sbjct: 61 DCVKEEGETPRPLVMFNPQVIASSDEINVYEEGCLSIPDQYAEVTRPRTVDVTWMDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q D L ATC+QHE+DHLNG LFID+L LKR MIT+KM KL Sbjct: 121 LQQETFDDLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKL 165 >gi|316932090|ref|YP_004107072.1| peptide deformylase [Rhodopseudomonas palustris DX-1] gi|315599804|gb|ADU42339.1| peptide deformylase [Rhodopseudomonas palustris DX-1] Length = 175 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ ++I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVAEVTTEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ ++ + +P FINP+I+ S + +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDIVRKEGDGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K K + Sbjct: 121 GNVREEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169 >gi|297182651|gb|ADI18809.1| N-formylmethionyl-tRNA deformylase [uncultured SAR11 cluster bacterium HF4000_37C10] Length = 185 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 79/175 (45%), Positives = 119/175 (68%), Gaps = 11/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ P+ +LR S +E+++ D+ L+D+MLE MY+ GIGLAA+Q+GV R++V Sbjct: 1 MALREILTEPNKLLREKSLAVEEVDEDLQKLMDDMLETMYAAPGIGLAAIQVGVPKRVIV 60 Query: 61 IDL-----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 +D+ + RKNPM F+NP+II S + S+Y+EGCLS+P A++ RS Sbjct: 61 LDIRWRDKSESTSDEKQVERKNPMCFVNPEIIAKSTNNSIYEEGCLSVPGQFAEIARSDK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V+Y+D Q + A+G+LATC+QHE+DHL GILFID+LS+LK+ MI KK++K Sbjct: 121 CHVKYLDYYGQPKEFVAEGMLATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAK 175 >gi|85373243|ref|YP_457305.1| peptide deformylase [Erythrobacter litoralis HTCC2594] gi|123409710|sp|Q2NCT3|DEF_ERYLH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|84786326|gb|ABC62508.1| polypeptide deformylase [Erythrobacter litoralis HTCC2594] Length = 194 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 119/192 (61%), Gaps = 25/192 (13%) Query: 1 MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++ PDP L+ VS P++ + N D+ L+D+M E MY+ GIGLAA+Q+GV R+ Sbjct: 1 MAIREILEVPDPRLKTVSEPVQPDEFNDDLKQLVDDMFETMYAAPGIGLAAIQVGVPKRV 60 Query: 59 VVIDLQD--------------------HAH---RKNPMVFINPKIITFSDDFSVYQEGCL 95 +VIDLQ+ H H + +P +FINP+II +++ S YQEGCL Sbjct: 61 LVIDLQEPDMDAEPEECGHDHGDGEGAHKHYPVKNDPRIFINPEIIDPNEELSTYQEGCL 120 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 S+P+ ADV R TV+Y D + DGLLATCLQHE+DHL GILFIDHLSRLK+ Sbjct: 121 SVPEIYADVDRPKTCTVKYQDLTGKTHQEDLDGLLATCLQHEMDHLEGILFIDHLSRLKK 180 Query: 156 DMITKKMSKLVQ 167 M KK+ K+ Q Sbjct: 181 QMALKKLKKMRQ 192 >gi|23016537|ref|ZP_00056292.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 170 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 114/160 (71%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PDP+L+ S+P+ ++ I L+ +MLE MY GIGLAA QIGVL R++V+D+ Sbjct: 5 PILTAPDPVLKSKSKPVAAVDDRIRALLADMLETMYHAPGIGLAAPQIGVLERVIVMDIG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P+ +NP+II SD+ + Y+EGCLS+P++ ++V R A + VRY+D Q + Sbjct: 65 RKEEDRAPIRMVNPEIIWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGAKQEL 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLAT +QHE+DHL+G+LFIDHLS LKR+MI +K+ K Sbjct: 125 LAEGLLATVVQHEMDHLDGVLFIDHLSSLKRNMILRKLLK 164 >gi|163744872|ref|ZP_02152232.1| peptide deformylase [Oceanibulbus indolifex HEL-45] gi|161381690|gb|EDQ06099.1| peptide deformylase [Oceanibulbus indolifex HEL-45] Length = 172 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 78/165 (47%), Positives = 116/165 (70%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P+++ PDP L++ + P+ ++ ++ L D+ML MY GIGLAA Q+GVL R++V+ Sbjct: 1 MKRPILLHPDPRLKKAAAPVADLSDELRVLGDDMLATMYDAPGIGLAAPQVGVLSRVIVL 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +++ P++ NP+I+ SDD + Y+EGCLSIP+ ADV R A + VR++D + + Sbjct: 61 DCVKEEGEAPRPLLMFNPEIVASSDDLNTYEEGCLSIPEQFADVTRPAEVEVRWLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL Sbjct: 121 EQREGFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKL 165 >gi|149201578|ref|ZP_01878552.1| peptide deformylase [Roseovarius sp. TM1035] gi|149144626|gb|EDM32655.1| peptide deformylase [Roseovarius sp. TM1035] Length = 172 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 82/166 (49%), Positives = 118/166 (71%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP LR+V P++ + + L +MLE MY GIGLAA Q+GV+ RL+V+ Sbjct: 1 MKRSILIHPDPRLRKVCTPVKDVTDALRKLSQDMLETMYDAPGIGLAAPQVGVMDRLIVL 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA- 119 D ++D P+V +NP+I FS++ SVY+EGCLSIPD ADV R A + +R+MD + Sbjct: 61 DCVKDEGATPRPIVMLNPEITAFSEEKSVYEEGCLSIPDQFADVTRPAEVEMRWMDLDGV 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +HQ + GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL Sbjct: 121 EHQEGFG-GLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKL 165 >gi|323142780|ref|ZP_08077493.1| peptide deformylase [Succinatimonas hippei YIT 12066] gi|322417425|gb|EFY08046.1| peptide deformylase [Succinatimonas hippei YIT 12066] Length = 175 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 85/167 (50%), Positives = 112/167 (67%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V FPD LR++ P+ + ++ + L D+M E MY +GIGLAA QIG+ R+VV Sbjct: 1 MAIREIVTFPDERLRQICAPVTEFDAALKELTDDMFETMYDDEGIGLAAPQIGIEKRIVV 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+ +D KN +V INPKI T + +EGCLS+P+YRA++KR IT+ D N Sbjct: 61 IDIPEEDGKQGKNKLVLINPKI-TAKEGEVASEEGCLSVPEYRAEIKRYEKITLECQDLN 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q QI ADGLLA C+QHELDHL+G LFID+LSRLKRD + K KL Sbjct: 120 GQKQIYEADGLLAICMQHELDHLDGKLFIDYLSRLKRDRLLTKYRKL 166 >gi|115522683|ref|YP_779594.1| peptide deformylase [Rhodopseudomonas palustris BisA53] gi|122297684|sp|Q07TX0|DEF_RHOP5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|115516630|gb|ABJ04614.1| peptide deformylase [Rhodopseudomonas palustris BisA53] Length = 180 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 79/169 (46%), Positives = 111/169 (65%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR S+P+E ++ ++ L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIIVPDKQLRLTSKPVETVSPEVRKLADDMFETMYDAPGIGLAAIQIAEPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +DL ++ + P FINP+II S + VY+EGCLSIP+Y A+V+R A + +RY D + Sbjct: 61 MDLVRKEGNGKTEPRAFINPEIIGASTETRVYEEGCLSIPEYYAEVERPAQVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGL ATC+QHE+DHLNG LFIDH+SRLKR ++ +K K + Sbjct: 121 GHVHEEDADGLFATCIQHEIDHLNGTLFIDHISRLKRALVMRKFEKAAK 169 >gi|56698051|ref|YP_168422.1| peptide deformylase [Ruegeria pomeroyi DSS-3] gi|56679788|gb|AAV96454.1| peptide deformylase [Ruegeria pomeroyi DSS-3] Length = 172 Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 80/169 (47%), Positives = 118/169 (69%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V P+ I+ ++ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRAILIHPDPRLKKVCAPVADISDELRALADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +++ + P+V NP+++ SD+ ++Y+EGCLSIP+ A+V R + V ++D + + Sbjct: 61 DCVKEESAPARPLVMFNPRVVAASDETNIYEEGCLSIPEQYAEVTRPKVVDVEWIDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 LQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|254477024|ref|ZP_05090410.1| peptide deformylase [Ruegeria sp. R11] gi|214031267|gb|EEB72102.1| peptide deformylase [Ruegeria sp. R11] Length = 189 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 84/171 (49%), Positives = 116/171 (67%), Gaps = 5/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V + + + L D+MLE MY+ G+GLAA QIGVL RL+V+ Sbjct: 18 MKRPILIHPDPRLKKVCAEVPDLTDAMRTLADDMLETMYAAPGVGLAAPQIGVLDRLIVL 77 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM--DCN 118 D ++ P+V NPKI++ SD+ +VY+EGCLSIPD A+V R + V +M D N Sbjct: 78 DCAKEDEESPRPLVMFNPKIVSASDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMNRDGN 137 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A + DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 138 AARETF--DGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 186 >gi|85705033|ref|ZP_01036133.1| peptide deformylase [Roseovarius sp. 217] gi|85670355|gb|EAQ25216.1| peptide deformylase [Roseovarius sp. 217] Length = 172 Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 80/165 (48%), Positives = 111/165 (67%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP LR+V P+ ++ + L +M E MY GIGLAA Q+GV+ RL+V+ Sbjct: 1 MKRSILIHPDPRLRKVCTPVTDVSDALRKLSQDMFETMYDAPGIGLAAPQVGVMDRLIVL 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++D P+ +NP+I FSD SVY+EGCLSIPD ADV R A + VR+MD + Sbjct: 61 DCVKDEGATPRPIAMLNPEITAFSDQTSVYEEGCLSIPDQFADVTRPAEVEVRWMDLDGV 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL Sbjct: 121 EHKEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKL 165 >gi|114770091|ref|ZP_01447629.1| peptide deformylase [alpha proteobacterium HTCC2255] gi|114548928|gb|EAU51811.1| peptide deformylase [alpha proteobacterium HTCC2255] Length = 172 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 74/161 (45%), Positives = 109/161 (67%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+++ PDP L+++ P++ ++++ L D+M+E MY G+GLAA Q+ R+ V+D Sbjct: 5 PILLHPDPRLKKLCVPVQSVDAETRKLADSMIETMYDAPGVGLAAPQVASDARIFVMDCT 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D P+V INP+II+ S++ + Y EGCLS+PD DV+R + + ++D + + Sbjct: 65 DSESDNQPLVLINPEIISVSEELNTYSEGCLSLPDLFEDVERPKQVRMSFLDIDGKQHNE 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 DGL ATC QHELDHLNG+LFIDHLSR+KR M+TKKM KL Sbjct: 125 LFDGLWATCAQHELDHLNGVLFIDHLSRMKRSMMTKKMVKL 165 >gi|262277954|ref|ZP_06055747.1| peptide deformylase [alpha proteobacterium HIMB114] gi|262225057|gb|EEY75516.1| peptide deformylase [alpha proteobacterium HIMB114] Length = 171 Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 77/148 (52%), Positives = 106/148 (71%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PDPILR+ S + K+++DI L+DNMLE MY GIGLAA Q+G+L +++VIDL Sbjct: 10 PDPILRKKSDEVSKVDNDIRALMDNMLETMYQAPGIGLAAPQVGILKKVIVIDLAKEDEP 69 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 K P+ NPKII SD+ S +EGCLSIP Y A+V R ++Y+D + + Q I A+ L Sbjct: 70 KKPLFIANPKIIWKSDELSSREEGCLSIPGYFAEVVRPTKCKLQYLDYDGKQQEIEAEDL 129 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDM 157 L+TC+QHE+DH +G+LFID+LS+LK+DM Sbjct: 130 LSTCIQHEVDHCDGVLFIDYLSKLKKDM 157 >gi|312115223|ref|YP_004012819.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100] gi|311220352|gb|ADP71720.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100] Length = 176 Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 83/170 (48%), Positives = 114/170 (67%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD ILR S+ +E ++ ++ L ++MLE MY+ GIGLAAVQIGVL RL+V Sbjct: 1 MAIRSIITIPDAILRETSKTVETVDDEVRALANDMLETMYAAPGIGLAAVQIGVLRRLIV 60 Query: 61 IDLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D Q + KNP+V INP+I+T D V++EGCLSIP A+V+R A + VRY+D Sbjct: 61 MDAQKGDEKGKNPVVLINPEILTHGDTPRVHEEGCLSIPQMYAEVERPALVRVRYVDAEG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q L AT +QHE+DHL G LFIDHLSRLKR ++ +K KL + R Sbjct: 121 KQQERDFSDLEATLVQHEIDHLEGRLFIDHLSRLKRTLLIRKYHKLQRER 170 >gi|86137254|ref|ZP_01055832.1| peptide deformylase [Roseobacter sp. MED193] gi|85826578|gb|EAQ46775.1| peptide deformylase [Roseobacter sp. MED193] Length = 172 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 81/169 (47%), Positives = 116/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K ++I PDP L+++ P+ ++ + L D+MLE MY+ GIGLAA QIGV+ RL+V+ Sbjct: 1 MKHSILIHPDPRLKKICAPVADLSDKLRLLADDMLETMYAAPGIGLAAPQIGVMERLIVL 60 Query: 62 DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + P+V NP+II+ S++ +VY+EGCLSIPD A+V R + V+++D N Sbjct: 61 DCEKEEGVEPKPLVMFNPEIISSSEETNVYEEGCLSIPDQYAEVTRPRDVEVQWLDRNGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 QQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|126738021|ref|ZP_01753742.1| peptide deformylase [Roseobacter sp. SK209-2-6] gi|126720518|gb|EBA17223.1| peptide deformylase [Roseobacter sp. SK209-2-6] Length = 172 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 79/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P++I PDP L++ P+ ++ + L D+MLE MY+ GIGLAA QIG++ RL+V+ Sbjct: 1 MKHPILIHPDPRLKKTCVPVADLSDKLRILADDMLETMYAAPGIGLAAPQIGIMQRLIVL 60 Query: 62 DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + P+V NP+I+ S++ +VY+EGCLSIP+ A+V R + VR++D + Sbjct: 61 DCEKEEGSSGKPLVMFNPEILASSEETNVYEEGCLSIPEQFAEVTRPKVVDVRWIDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 EQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|99082420|ref|YP_614574.1| peptide deformylase [Ruegeria sp. TM1040] gi|99038700|gb|ABF65312.1| peptide deformylase [Ruegeria sp. TM1040] Length = 174 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 81/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++++ + ++ D+ L D+MLE MY+ GIGLAA QIGVL RL+V+ Sbjct: 1 MKRSILIHPDPRLKKIATDVPDLSDDLRALADDMLETMYAAPGIGLAAPQIGVLDRLIVM 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +++ P+V NP++I SD+ +VY+EGCLSIP+ A+V R + V +MD + Sbjct: 61 DCVKEGEGDARPLVMFNPRVIASSDETNVYEEGCLSIPEQYAEVTRPKVVDVEWMDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|119943871|ref|YP_941551.1| peptide deformylase [Psychromonas ingrahamii 37] gi|119862475|gb|ABM01952.1| peptide deformylase [Psychromonas ingrahamii 37] Length = 167 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 76/157 (48%), Positives = 108/157 (68%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+E+I ++ +NM+E MY +G+GLAA Q+ RLVVID+ + Sbjct: 9 FPDKRLRTIAKPVEQITVELKKTAENMIETMYEEEGVGLAATQVNFHRRLVVIDVSEQ-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R MV INP I+ S + + +EGCLS+P+ A+VKR+ F+T+ Y+D + Q++ ADG Sbjct: 67 RNQAMVIINPVIVEHSGE-EISEEGCLSVPETNAEVKRAEFVTLEYLDIEGKQQVLKADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA CLQHE+DHLNG LFID+LS LK+ I K+ KL Sbjct: 126 LLAVCLQHEIDHLNGKLFIDYLSPLKQKRIKTKLEKL 162 >gi|114766694|ref|ZP_01445633.1| peptide deformylase [Pelagibaca bermudensis HTCC2601] gi|114541084|gb|EAU44139.1| peptide deformylase [Roseovarius sp. HTCC2601] Length = 173 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 82/170 (48%), Positives = 114/170 (67%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++ P+ ++ + L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRPILIHPDPRLKKACAPVPDLSDKLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60 Query: 62 DLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D D P+V NP+++ SD+ +VY+EGCLSIPD A+V+R + V ++D + Sbjct: 61 DCAKADDGEAPRPLVMFNPQVVASSDERNVYEEGCLSIPDQYAEVERPKVVDVEWLDRDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 TLQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRDR 170 >gi|110678658|ref|YP_681665.1| peptide deformylase [Roseobacter denitrificans OCh 114] gi|109454774|gb|ABG30979.1| peptide deformylase [Roseobacter denitrificans OCh 114] Length = 175 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 78/165 (47%), Positives = 114/165 (69%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ +++ PDP L++ + P+ I+ ++ L D+MLE MY GIGLAA Q+G+L R+VV+ Sbjct: 4 MKRSIILHPDPRLKKTAEPVADISDELRRLGDDMLETMYDAPGIGLAAPQVGILQRVVVM 63 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +++ P++ NP++I SD+ SVY+EGCLSIP+ A+V R A + VR+MD + Sbjct: 64 DCIKEPGDTPRPVIMFNPEVIATSDETSVYEEGCLSIPEQFAEVTRPAEVEVRWMDRDGA 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q GL ATC QHE+DHL+G LFID+L L+R MIT+KM KL Sbjct: 124 AQSEVFTGLWATCAQHEIDHLDGKLFIDYLRPLRRQMITRKMVKL 168 >gi|163733890|ref|ZP_02141332.1| peptide deformylase [Roseobacter litoralis Och 149] gi|161393001|gb|EDQ17328.1| peptide deformylase [Roseobacter litoralis Och 149] Length = 175 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 78/165 (47%), Positives = 114/165 (69%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ +++ PDP L++++ P+ I+ ++ L D+MLE MY GIGLAA Q+G+L R+ V+ Sbjct: 4 MKRSIILHPDPRLKKIAAPVADISDELRQLGDDMLETMYDAPGIGLAAPQVGILQRVFVM 63 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +++ P+V NP++I SD+ +VY+EGCLSIP+ ADV R A + +R+MD + Sbjct: 64 DCVKEPGETPRPIVMFNPEVIATSDETNVYEEGCLSIPEQFADVTRPADVELRWMDRDGA 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q GL ATC QHE+DHL+G LFID+L LKR MIT+KM KL Sbjct: 124 EQTEVFTGLWATCAQHEIDHLDGKLFIDYLRPLKRQMITRKMVKL 168 >gi|110832992|ref|YP_691851.1| peptide deformylase [Alcanivorax borkumensis SK2] gi|122959726|sp|Q0VTE1|DEF_ALCBS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|110646103|emb|CAL15579.1| peptide deformylase [Alcanivorax borkumensis SK2] Length = 168 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/166 (47%), Positives = 116/166 (69%), Gaps = 4/166 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR V++P+EK++ ++ LID+M E MY+ GIGLAA Q+ V +L+V Sbjct: 1 MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMFETMYAAPGIGLAATQVDVHIQLIV 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +DL +DH PMVFINP+I +++ + Y+EGCLS+P + V R A + + +D + Sbjct: 61 MDLSEDH---NKPMVFINPQITPLTEEQAPYEEGCLSVPGFYEKVTRPARVRINALDRDG 117 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ Sbjct: 118 NAFEVEADELLATCIQHEMDHLDGKLFVDYVSRLKRDRIKKKLEKI 163 >gi|83859278|ref|ZP_00952799.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633] gi|83852725|gb|EAP90578.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633] Length = 175 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L+ VS+P++ ++ + L+D+M+E MY+ DGIGLAA+Q+GV R++V Sbjct: 1 MAIREILTVPDPRLKLVSKPVDAVDDALRALMDDMVETMYAADGIGLAAIQVGVDKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL D R +P ++NP I ++D YQEGCLS+PD V+R + V Y+D + + Sbjct: 61 MDLSDE--RNDPRYYVNPVITPLTEDLKPYQEGCLSVPDVFDSVERPKKVKVEYLDYDGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+ L A C+QHE+DHL G++FID+LSRLKRD KK+ KLV+ R Sbjct: 119 KREEIAEDLFAVCIQHEMDHLEGVVFIDYLSRLKRDRAVKKVQKLVKQR 167 >gi|326388512|ref|ZP_08210106.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370] gi|326206977|gb|EGD57800.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370] Length = 189 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 83/185 (44%), Positives = 113/185 (61%), Gaps = 20/185 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L++VS+P+E + ++ L+ +M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAIREILEVPDPRLKQVSKPVEVFDDELKTLVADMFETMYDAPGIGLAAIQVGVPLRVLV 60 Query: 61 IDLQD--------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 IDLQ +K P+VFINP + + S+D +VY EGCLS+P+ Sbjct: 61 IDLQPDDPDAEPEVCTAHGGHHHTHQPTKKEPLVFINPVLSSLSEDLAVYNEGCLSVPEI 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+V R + I R+ D + D LLATCLQHE+DHL GILFIDHLSRLKR M K Sbjct: 121 YAEVTRPSRIHARWQDLDGNVHEAEIDDLLATCLQHEMDHLEGILFIDHLSRLKRQMALK 180 Query: 161 KMSKL 165 K+ KL Sbjct: 181 KLEKL 185 >gi|296535343|ref|ZP_06897545.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] gi|296264327|gb|EFH10750.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] Length = 177 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 82/169 (48%), Positives = 114/169 (67%), Gaps = 4/169 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+++ PD LR +RP+ +++ + L ML MY GIGLAA QIG L RLVV+DL Sbjct: 8 PILLVPDARLRAKARPVGPGDTETVRALAPRMLATMYKAPGIGLAAPQIGELLRLVVVDL 67 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 Q + P V INP+I+ S + S +EGCLS+P+ A+V R A I VR++D + Sbjct: 68 QPD-EKPEPYVMINPEIVAASTELSSREEGCLSLPNQYAEVTRPAEIKVRWLDLEGAKRE 126 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV--QLRD 170 + ADGLLATC+QHE+DHLNG+LF+DHLS LKR+M+ +K++K + Q RD Sbjct: 127 MQADGLLATCIQHEIDHLNGVLFVDHLSALKRNMLLRKLAKELKAQARD 175 >gi|254460256|ref|ZP_05073672.1| peptide deformylase [Rhodobacterales bacterium HTCC2083] gi|206676845|gb|EDZ41332.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083] Length = 172 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 1/161 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 ++I PDP L++V + I+ I + D+MLE MY+ GIGLAA Q+GVL R++V+D ++ Sbjct: 5 ILIHPDPRLKKVCAAVPDISDKIRSFADDMLETMYTAPGIGLAAPQVGVLERMIVLDCVK 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + P+V +NP++I SD+ +VY EGCLSIPD ADV R + V ++D + Q Sbjct: 65 EDGAKPEPLVMVNPRVIAASDETNVYDEGCLSIPDQYADVTRPKEVRVEWLDLDGNLQKR 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 DGL ATC+QHE+DHL G LFID+L LKR MIT+KM KL Sbjct: 125 DMDGLWATCVQHEIDHLEGKLFIDYLKPLKRQMITRKMQKL 165 >gi|16124527|ref|NP_419091.1| polypeptide deformylase [Caulobacter crescentus CB15] gi|221233212|ref|YP_002515648.1| peptide deformylase [Caulobacter crescentus NA1000] gi|23396553|sp|Q9ABF5|DEF_CAUCR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767574|sp|B8GYE3|DEF_CAUCN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|13421407|gb|AAK22259.1| polypeptide deformylase [Caulobacter crescentus CB15] gi|220962384|gb|ACL93740.1| peptide deformylase [Caulobacter crescentus NA1000] Length = 173 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 71/151 (47%), Positives = 105/151 (69%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L+++S P+E + ++ L+D+MLE MY GIGLAAVQ+G R++V+DL K P Sbjct: 18 LKKISTPVEAVTDELRALMDDMLETMYDAPGIGLAAVQVGEPVRVIVMDLAREGEDKAPR 77 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 F+NP+I+ S+D Y+EGCLS+P+Y +V+R + +T+RYM+ + + A+GL A C Sbjct: 78 YFVNPEILASSEDLQGYEEGCLSVPEYYDEVERPSKVTLRYMNYQGETVVEEAEGLFAVC 137 Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +QHE+DHL G+LFIDHLSRL+RD K+ K Sbjct: 138 IQHEMDHLEGVLFIDHLSRLRRDRAMAKVKK 168 >gi|209965583|ref|YP_002298498.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] gi|209959049|gb|ACI99685.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] Length = 173 Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 75/161 (46%), Positives = 112/161 (69%), Gaps = 1/161 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I PD LR+ + P+ ++ + L+D+MLE MY GIGLAA Q+GVL R++V+D+ + Sbjct: 6 ILIVPDARLRQTAEPVANVDGRVARLMDDMLETMYKAPGIGLAAPQVGVLERVIVMDIAE 65 Query: 66 H-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ NP+II SD+ + QEGCLSIPD ADV R + VRY+D + + + + Sbjct: 66 RKTEAPTPILMANPEIIARSDELATAQEGCLSIPDIYADVTRPRQVRVRYVDRDGEVREL 125 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGL ATC+QHE+DHLNG+LF+D+LS LKR M+ +++ K+ Sbjct: 126 DADGLTATCVQHEIDHLNGVLFVDYLSALKRSMLLRRLQKM 166 >gi|83951626|ref|ZP_00960358.1| peptide deformylase [Roseovarius nubinhibens ISM] gi|83836632|gb|EAP75929.1| peptide deformylase [Roseovarius nubinhibens ISM] Length = 172 Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 77/165 (46%), Positives = 112/165 (67%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V P++ I+ + L D+MLE MY GIGLA QIGV+ R++V+ Sbjct: 1 MKRPILIHPDPRLKKVCAPLDDISDAVRALADDMLETMYDAPGIGLAGPQIGVMDRIIVM 60 Query: 62 DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + D P+V +NP++I SD + Y+EGCLSIPD A+V R + VR++ + + Sbjct: 61 DCEKDEGVDPAPLVMVNPEVIASSDTLNTYEEGCLSIPDQFAEVTRPKEVEVRWLGLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 DGL ATC+QHE+DHL+G LFID+L +KR +IT+KM KL Sbjct: 121 EHSRGFDGLWATCVQHEIDHLDGKLFIDYLGTMKRQLITRKMVKL 165 >gi|294085060|ref|YP_003551820.1| peptide deformylase protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664635|gb|ADE39736.1| peptide deformylase protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 177 Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 79/161 (49%), Positives = 111/161 (68%), Gaps = 5/161 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ PDP+LR + + ++ I NL+D+M MY GIGLAA QI + RL+V+D Sbjct: 11 IIKLPDPVLREKAVAVPEVTDGIRNLLDDMAVTMYDAPGIGLAAPQINISERLIVMDC-- 68 Query: 66 HAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P ++ INP+II S+D S+ +EGCLSIPD A+V R A +TVRY D + Q+ Sbjct: 69 -GKDETPELYKMINPEIIETSEDKSILEEGCLSIPDQTAEVTRPATVTVRYTDIDGDTQM 127 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A+GLLA C+QHE+DHLNG+LFIDH+SRLKRDMI +++ K Sbjct: 128 LTAEGLLAACVQHEIDHLNGVLFIDHISRLKRDMIIRRVMK 168 >gi|259417507|ref|ZP_05741426.1| peptide deformylase [Silicibacter sp. TrichCH4B] gi|259346413|gb|EEW58227.1| peptide deformylase [Silicibacter sp. TrichCH4B] Length = 174 Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 78/169 (46%), Positives = 117/169 (69%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++++ + ++ ++ L D+MLE MY+ GIGLAA QIG+L RL+V+ Sbjct: 1 MKRSILIHPDPRLKKIAADVPDLSDELRALADDMLETMYAAPGIGLAAPQIGILDRLIVL 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +++ P+V NP++I SD+ +VY+EGCLSIP+ A+V R + V ++D + Sbjct: 61 DCVKEGEGEARPLVMFNPRVIAASDETNVYEEGCLSIPEQYAEVTRPKVVDVEWLDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|126733797|ref|ZP_01749544.1| Peptide deformylase [Roseobacter sp. CCS2] gi|126716663|gb|EBA13527.1| Peptide deformylase [Roseobacter sp. CCS2] Length = 173 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 78/166 (46%), Positives = 114/166 (68%), Gaps = 1/166 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PDP L++V+ P+ +N D+ L D+MLE MY GIGLAA QI V+ R++V Sbjct: 1 MALRNILIHPDPRLKKVATPVPSVNDDLRRLADDMLETMYDAPGIGLAAPQIAVMNRMLV 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D ++ PMV INP+++ S++ +VY+EGCLSIP+ A+V+R + V + + + Sbjct: 61 MDCAKEDDATPEPMVLINPEVVWTSEEQNVYEEGCLSIPEQYAEVERPTEVEVTWTNLDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q + DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL Sbjct: 121 QAKRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKL 166 >gi|254419890|ref|ZP_05033614.1| peptide deformylase [Brevundimonas sp. BAL3] gi|196186067|gb|EDX81043.1| peptide deformylase [Brevundimonas sp. BAL3] Length = 192 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 80/173 (46%), Positives = 111/173 (64%), Gaps = 16/173 (9%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH------ 66 IL++VS+P+ ++ + L+D+MLE MY+ GIGLAAVQ+G L R++V+DL D Sbjct: 17 ILKQVSKPVAAVDDAVRALMDDMLETMYAAPGIGLAAVQVGALDRVIVMDLGDRDGTICE 76 Query: 67 ----------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 RKNP F NP+I+ SD+ Y+EGCLSIP+Y V+R A + +RY++ Sbjct: 77 TEEEDTPEAAEARKNPRFFANPEILWTSDELYTYEEGCLSIPEYFDKVERPARVRIRYLN 136 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q A+GL A C+QHE+DHLNG+LFIDHLSRLKRD K+ K + R Sbjct: 137 RDGQSVEEEAEGLYAVCIQHEMDHLNGVLFIDHLSRLKRDRAVTKVKKAARDR 189 >gi|149185875|ref|ZP_01864190.1| Peptide deformylase [Erythrobacter sp. SD-21] gi|148830436|gb|EDL48872.1| Peptide deformylase [Erythrobacter sp. SD-21] Length = 188 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 86/184 (46%), Positives = 116/184 (63%), Gaps = 19/184 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L+ VS P+ + + ++ L+ +M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAIREILEVPDPRLKVVSEPVTEFDDELRELVSDMFETMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDLQ----------------DHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 IDLQ +H H +K P VF+NP+I+ ++D + YQEGCLS+PD Sbjct: 61 IDLQPEDEDAEGEVCNHGGHEHVHYPTKKEPRVFVNPEILDPAEDLATYQEGCLSVPDIF 120 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 ADV R A VRY D + +GL+ATCLQHE+DHL GILFIDHLSRLKR+M KK Sbjct: 121 ADVDRPATCRVRYQDLEGETHEEELEGLMATCLQHEMDHLEGILFIDHLSRLKRNMALKK 180 Query: 162 MSKL 165 + KL Sbjct: 181 LKKL 184 >gi|295691230|ref|YP_003594923.1| peptide deformylase [Caulobacter segnis ATCC 21756] gi|295433133|gb|ADG12305.1| peptide deformylase [Caulobacter segnis ATCC 21756] Length = 173 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 70/152 (46%), Positives = 105/152 (69%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +L+++S P+E + ++ L+D+MLE MY GIGLAAVQ+G R++ +DL P Sbjct: 17 VLKKISTPVEVVTDELRALMDDMLETMYDAPGIGLAAVQVGEPVRVITMDLAREGEEPAP 76 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 F+NP+I+ S++ VY+EGCLS+P+Y +V+R A +T+RYM+ + + A+GL A Sbjct: 77 RYFVNPEILASSEEMFVYEEGCLSVPEYFDEVERPAKVTLRYMNYQGETVVEEAEGLFAV 136 Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 C+QHE+DHL G+LFIDHLSRL+RD K+ K Sbjct: 137 CIQHEMDHLEGVLFIDHLSRLRRDRAIAKVKK 168 >gi|170742368|ref|YP_001771023.1| peptide deformylase [Methylobacterium sp. 4-46] gi|168196642|gb|ACA18589.1| peptide deformylase [Methylobacterium sp. 4-46] Length = 173 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 80/167 (47%), Positives = 109/167 (65%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR S P+ I ++ L +MLE MY G+GLAA+Q+G R+V Sbjct: 1 MTIRPLVILPDARLRVTSSPVGTITGEVRKLAADMLETMYDAPGVGLAAIQVGEPTRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + P+V I+P+I+ S++ Y+EGCLSIP+Y A+V R + VR+ + + Sbjct: 61 IDTSKDKEARTPLVLIDPEIVWSSEETRAYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHELDHLNG+LFIDH+S+LKRD + KK +K + Sbjct: 121 TVEQEADGLLATCLQHELDHLNGVLFIDHISKLKRDRVMKKFAKAAK 167 >gi|159042735|ref|YP_001531529.1| peptide deformylase [Dinoroseobacter shibae DFL 12] gi|157910495|gb|ABV91928.1| peptide deformylase [Dinoroseobacter shibae DFL 12] Length = 187 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/169 (44%), Positives = 106/169 (62%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP L++ P+ +I +I L D+ML MY GIGLA Q+ + R++ Sbjct: 14 MTIRPILIHPDPRLKKTVDPVAEITDEIRQLADDMLATMYDAPGIGLAGPQVAAMTRIIT 73 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +PMV INP+I+ S++ + Y+EGCLSIP+ ADV+R A + VR+ Sbjct: 74 MDCAPKDGEPDPMVLINPEIVWSSEEMNTYEEGCLSIPEMYADVERPAEVEVRWTTLEGG 133 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 GL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + R Sbjct: 134 DASARWGGLHATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRER 182 >gi|220924615|ref|YP_002499917.1| peptide deformylase [Methylobacterium nodulans ORS 2060] gi|219949222|gb|ACL59614.1| peptide deformylase [Methylobacterium nodulans ORS 2060] Length = 173 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/167 (47%), Positives = 110/167 (65%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR S P+ I ++ L +MLE MY G+GLAA+QIG R+V Sbjct: 1 MTIRPLVILPDARLRVTSEPVGTITGEVRKLASDMLETMYDAPGVGLAAIQIGEPTRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +NP+V ++P+I+ S++ Y+EGCLSIP+Y A+V R + VR+ + + Sbjct: 61 VDTSKDKEARNPLVLLDPEIVWASEETRSYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDH+S+LKRD + KK +K + Sbjct: 121 VVEQEADGLLATCLQHEIDHLNGVLFIDHISKLKRDRVLKKFAKAAK 167 >gi|254436643|ref|ZP_05050137.1| peptide deformylase [Octadecabacter antarcticus 307] gi|198252089|gb|EDY76403.1| peptide deformylase [Octadecabacter antarcticus 307] Length = 178 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 77/166 (46%), Positives = 113/166 (68%), Gaps = 1/166 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +++ PDP L+ V+ P+ ++ + L D+MLE MY+ GIGLAA Q+G++ R++V Sbjct: 4 MTLRSILLHPDPRLKSVADPVATVDKTLHALADDMLETMYNAPGIGLAAPQLGIMQRMLV 63 Query: 61 ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D ++D PMV INP++I S D ++Y EGCLSIPD A+V+R A + V +M+ + Sbjct: 64 MDCIKDDMETPQPMVLINPRVIFASSDTNIYDEGCLSIPDQYAEVERPAVVKVEWMNLDG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q L ATC+QHE+DHLNG LFID+L L+R MIT+KM KL Sbjct: 124 KTQQEEFSDLWATCVQHEIDHLNGKLFIDYLKPLRRQMITRKMQKL 169 >gi|330806738|ref|YP_004351200.1| peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374846|gb|AEA66196.1| Peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 168 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 75/157 (47%), Positives = 106/157 (67%), Gaps = 2/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+ T +D+ YQEGCLS+P + +V R + ++ +D + Q + A+G Sbjct: 67 RSEPRVFINPEFETLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPYELIAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKL 163 >gi|119383399|ref|YP_914455.1| peptide deformylase [Paracoccus denitrificans PD1222] gi|119373166|gb|ABL68759.1| peptide deformylase [Paracoccus denitrificans PD1222] Length = 173 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 76/170 (44%), Positives = 111/170 (65%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +++ PDP L+++ P+ +I +I L +ML MY G+GLAA Q+GVL RL V Sbjct: 1 MTLRSIILHPDPRLKKICEPVARITPEIETLAADMLATMYDAPGVGLAAPQVGVLSRLYV 60 Query: 61 IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D + D +NP+V +NP++ S+ + Y+EGCLSIP+ ADV R A + VR++ + Sbjct: 61 MDCEKDPEAPRNPIVMVNPEVTWTSEALNTYEEGCLSIPEQYADVTRPAEVRVRWLGLDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GL ATC QHE+DHL+G LFIDHL +KR MIT+KM KL + R Sbjct: 121 KTHEREFEGLWATCAQHEIDHLDGRLFIDHLGPIKRQMITRKMVKLKRER 170 >gi|84514541|ref|ZP_01001905.1| peptide deformylase [Loktanella vestfoldensis SKA53] gi|84511592|gb|EAQ08045.1| peptide deformylase [Loktanella vestfoldensis SKA53] Length = 173 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 84/166 (50%), Positives = 112/166 (67%), Gaps = 1/166 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP L++V+ P+ I+ D+ L D+MLE MY GIGLAA Q+ V+ R++V Sbjct: 1 MTIRPILIHPDPRLKKVTAPVASIDDDLRRLADDMLETMYEAPGIGLAAPQVAVMRRVIV 60 Query: 61 IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D Q D PMV INP+II S+ SVY EGCLSIP+ A+V R A + V ++ + Sbjct: 61 MDCQKDAEATPEPMVLINPEIIWSSEATSVYDEGCLSIPEQYAEVTRPAEVEVAWLGLDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q DGL ATC+QHE+DHL+G LFID L LKR MIT+KM KL Sbjct: 121 KPQRARFDGLWATCVQHEIDHLDGKLFIDCLGPLKRQMITRKMQKL 166 >gi|77464452|ref|YP_353956.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1] gi|126463292|ref|YP_001044406.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|221640344|ref|YP_002526606.1| peptide deformylase [Rhodobacter sphaeroides KD131] gi|332559341|ref|ZP_08413663.1| Peptide deformylase [Rhodobacter sphaeroides WS8N] gi|77388870|gb|ABA80055.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1] gi|126104956|gb|ABN77634.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|221161125|gb|ACM02105.1| Peptide deformylase [Rhodobacter sphaeroides KD131] gi|332277053|gb|EGJ22368.1| Peptide deformylase [Rhodobacter sphaeroides WS8N] Length = 177 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 74/163 (45%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P++I PDP L+++ P+ +I D+ L D+ML MY GIGLAA Q+GV+ RL+V+D Sbjct: 3 RPILIHPDPRLKKICDPVGQITDDLRRLADDMLATMYDAPGIGLAAPQVGVVRRLIVLDC 62 Query: 64 QDHA-HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + + P+ +NP+++ S+D S Y+EGCLS+P+ ADV+R A + VR+ + + + Sbjct: 63 NKESDGARRPVAMVNPEVVWRSEDVSTYEEGCLSLPNVFADVERPAEVKVRWTGLDGREE 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL ATC+QHE+DHL+G LFID+L LKR MIT+KM K Sbjct: 123 EEQFAGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKF 165 >gi|226942187|ref|YP_002797260.1| peptide deformylase [Azotobacter vinelandii DJ] gi|259645177|sp|C1DFV8|DEF_AZOVD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|226717114|gb|ACO76285.1| Formylmethionine deformylase protein [Azotobacter vinelandii DJ] Length = 168 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 105/156 (67%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++PIE ++ I LID+M E MY+ GIGLAA Q+ V RLVV+DL + Sbjct: 9 FPDPRLRTIAKPIETVDDGIRRLIDDMFETMYAAPGIGLAATQVNVHKRLVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+ +++ YQEGCLS+P + +V R + +R +D + Q + A+G Sbjct: 67 KNEPRVFINPEFEALTEELEPYQEGCLSVPGFYENVDRPQKVRIRALDRDGQPFELVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162 >gi|144898454|emb|CAM75318.1| peptide deformylase [Magnetospirillum gryphiswaldense MSR-1] Length = 170 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 78/159 (49%), Positives = 109/159 (68%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ PDP L++ + + +++ I L+D+MLE MY+ GIGLAA Q+ V R++V D+ Sbjct: 6 ILTAPDPRLKQKAAVVADVDASIRTLMDDMLETMYAAPGIGLAAPQVAVGKRVIVADIGR 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P+ +NP+I+ SDD + Y+EGCLS+P++ A V R I VRY D HQ I Sbjct: 66 SEDDRQPVRMVNPEIVWVSDDDNTYEEGCLSVPEHYAAVVRPRAIRVRYRDETGTHQEID 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLAT LQHE+DHL+GILFIDHLS LKR+MI +K+ K Sbjct: 126 ADGLLATVLQHEMDHLDGILFIDHLSSLKRNMILRKLLK 164 >gi|115372443|ref|ZP_01459752.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|310819504|ref|YP_003951862.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|115370656|gb|EAU69582.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|309392576|gb|ADO70035.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 173 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 69/167 (41%), Positives = 112/167 (67%), Gaps = 1/167 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++I+P P+L++ +RP+ K++ + L+ +M E MY+ DG+GLAA Q+G+L R++V+D Sbjct: 3 REILIWPHPVLKQKARPVAKVDDAVRALVKDMFETMYAADGVGLAAPQVGILQRIIVLDT 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+ INP+I+ + + Y EGCLSIP DV R+A +TV+++D + Q Q Sbjct: 63 TPRQPDSKPLAMINPEIVGM-EGATTYTEGCLSIPGEAEDVDRAAIVTVKFLDVDGQEQT 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + D LLA +QHE DHL+G +F+DH+S LKR++I K+M +L R+ Sbjct: 122 LTCDDLLAIAVQHETDHLDGTVFVDHVSSLKREIIRKRMKRLKTERE 168 >gi|294678913|ref|YP_003579528.1| peptide deformylase [Rhodobacter capsulatus SB 1003] gi|294477733|gb|ADE87121.1| peptide deformylase-2 [Rhodobacter capsulatus SB 1003] Length = 178 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 77/166 (46%), Positives = 109/166 (65%), Gaps = 1/166 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP L+++ P+ ++ I L D+MLE MY G+GLAA QIGV+ R+ V Sbjct: 3 MTTRPILIHPDPRLKKLCDPVAALDDTIRQLADDMLETMYDAPGVGLAAPQIGVMSRIFV 62 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D ++ MV INP+I S++ +V++EGCLS+P+ ADV R + +R++ + Sbjct: 63 MDCAKEKTGFPEAMVMINPEITWVSEEKNVHEEGCLSLPEQYADVTRPKEVRMRWLGLDG 122 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q DGL ATC QHELDHLNG LFIDHL LKR M+T+K+ KL Sbjct: 123 QMHEEQFDGLWATCAQHELDHLNGKLFIDHLGPLKRQMVTRKLEKL 168 >gi|146276205|ref|YP_001166364.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] gi|145554446|gb|ABP69059.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] Length = 177 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 77/164 (46%), Positives = 111/164 (67%), Gaps = 3/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++I PDP L+++ P+ +I D+ L D+ML MY GIGLAA Q+GV+ RLVV+D Sbjct: 3 RSILIHPDPRLKKICDPVAEITDDLRRLADDMLATMYDAPGIGLAAPQVGVMRRLVVMDC 62 Query: 64 --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 Q A R+ P+ INP+++ S+D S Y+EGCLS+P+ A+V+R A + VR+ + + Sbjct: 63 NKQPEAPRR-PIAMINPQVVWASEDLSTYEEGCLSLPNVFAEVERPAEVKVRWTGIDGRE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL ATC+QHE+DHL+G LFID+L LKR MIT+KM K Sbjct: 122 EEEQFSGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKF 165 >gi|163795436|ref|ZP_02189403.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199] gi|159179422|gb|EDP63953.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199] Length = 175 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 108/153 (70%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PDP+L+ R ++ ++ ++ LID+M + MY G+GLAA Q+GV R++V+D+ Sbjct: 5 PIIWAPDPVLKTKCRSVDVVDDEVRRLIDDMFQTMYFAPGVGLAAPQVGVTKRVIVVDVA 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P+ +NP+I+ SD +Y+EGCLS+P+ ADV+R++ + VRY+D + Q I Sbjct: 65 GKDEKPQPIALVNPEIVWRSDATQIYEEGCLSLPELYADVERASHVKVRYLDRDGAEQKI 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 +GLLA CLQHE+DH++G+LF+DH+S LKR++ Sbjct: 125 EGEGLLAVCLQHEIDHIDGVLFVDHISALKRNI 157 >gi|226327658|ref|ZP_03803176.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198] gi|225204184|gb|EEG86538.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198] Length = 172 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 84/166 (50%), Positives = 110/166 (66%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 PL+ FPD LRRV+ P+EK++ +I LID+M+E MY+ GIGLAA Q+ V R+VVID+ Sbjct: 5 PLLRFPDERLRRVAVPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ R P+ INP+II+ D+ +GCLSIPD A +R F+ VR +D N + Sbjct: 65 EN--RDQPIALINPEIISTEDEVMDMMDGCLSIPDSFAPTERYRFLKVRALDRNGDEIEL 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A L A C+QHELDHL+G LFIDHLS LKR I KK KL +L D Sbjct: 123 EASDLFAGCIQHELDHLDGKLFIDHLSPLKRQRIEKKQKKLSKLID 168 >gi|21233177|ref|NP_639094.1| peptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770117|ref|YP_244879.1| peptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|188993325|ref|YP_001905335.1| peptide deformylase [Xanthomonas campestris pv. campestris str. B100] gi|39931165|sp|Q8P4F9|DEF2_XANCP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|21115026|gb|AAM43006.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575449|gb|AAY50859.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|167735085|emb|CAP53297.1| Peptide deformylase [Xanthomonas campestris pv. campestris] Length = 170 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 81/164 (49%), Positives = 111/164 (67%), Gaps = 6/164 (3%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + P+ E ++ L+D+M + MY GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + P VFINP+I+T + VYQEGCLS+P ADV R+ ITVRY+D Q Sbjct: 65 DVSEE--KDAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAITVRYLDRQGQP 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q + DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++KL Sbjct: 122 QELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKL 165 >gi|294625234|ref|ZP_06703874.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666267|ref|ZP_06731518.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600462|gb|EFF44559.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603976|gb|EFF47376.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 170 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 80/163 (49%), Positives = 111/163 (68%), Gaps = 6/163 (3%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ D R P VF+NP+I++ + +YQEGCLS+P ADV R+ ITVRY+D Q Sbjct: 65 DISDE--RNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQGQP 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K Sbjct: 122 QELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164 >gi|126728524|ref|ZP_01744340.1| peptide deformylase [Sagittula stellata E-37] gi|126711489|gb|EBA10539.1| peptide deformylase [Sagittula stellata E-37] Length = 175 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V + ++ ++ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRSIIIHPDPRLKKVCDAVPDLSDELHVLADDMLETMYDAPGIGLAAPQIGVLSRLIVL 60 Query: 62 DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D D+ P+V NP++I SD+ +VY+EGCLSIP+ A+V+R + V ++D + Sbjct: 61 DCAKSDNGEDARPLVMFNPRVIASSDEQNVYEEGCLSIPEQYAEVERPRVVDVEWLDRDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGL ATC+QHE+DHL+G LFID+L L+R MIT+KM KL + R Sbjct: 121 MLRTETFDGLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMVKLKKER 170 >gi|315497920|ref|YP_004086724.1| peptide deformylase [Asticcacaulis excentricus CB 48] gi|315415932|gb|ADU12573.1| peptide deformylase [Asticcacaulis excentricus CB 48] Length = 178 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 77/165 (46%), Positives = 111/165 (67%), Gaps = 9/165 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ P P+L++VS+P+E + ++ L+D+MLE MY GIGLAA+QIG R++ Sbjct: 1 MAIRDIITVPHPLLKQVSKPVEGGVTDELRALMDDMLETMYDAPGIGLAAIQIGEPIRVI 60 Query: 60 VIDLQ--------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 V+DLQ D K P F+NP+II S++ S Y EGCLS+P+ +VKR A + Sbjct: 61 VMDLQERPDDLPEDAPAPKQPRYFVNPEIIWASEELSTYDEGCLSVPEVYDEVKRPARVR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 ++Y++ + I DGL ATC+QHE+DHLNG+LFIDHLS+LKRD Sbjct: 121 LKYLNYQGEEVIEECDGLYATCIQHEMDHLNGVLFIDHLSKLKRD 165 >gi|237806929|ref|YP_002891369.1| peptide deformylase [Tolumonas auensis DSM 9187] gi|259645187|sp|C4L7Y4|DEF_TOLAT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|237499190|gb|ACQ91783.1| peptide deformylase [Tolumonas auensis DSM 9187] Length = 167 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/159 (50%), Positives = 112/159 (70%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR+++ PIEKI SD+ ++I++M E MY +GIGLAA Q+ + RLVV+D ++ Sbjct: 9 FPDERLRKIATPIEKITSDLEHIIEDMFETMYLEEGIGLAATQVNIHKRLVVVDTSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R PMVFINP++I + + +EGCLS+P+ RA V R+ +I VR +D + + I ADG Sbjct: 67 RDQPMVFINPELIEKRGETGI-EEGCLSVPECRAFVPRAEWIKVRALDRHGEPFEIEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA CLQHE+DHL G LF+D+LS LKR I +K+ KL + Sbjct: 126 LLAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAR 164 >gi|293611136|ref|ZP_06693434.1| peptide deformylase [Acinetobacter sp. SH024] gi|292826387|gb|EFF84754.1| peptide deformylase [Acinetobacter sp. SH024] gi|325124152|gb|ADY83675.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2] Length = 176 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/166 (45%), Positives = 112/166 (67%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR +++P+E++ +I L +MLE MY+ GIGLAA Q+ +L+VIDL Sbjct: 5 PILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + +PMVFINPKI ++D Y+EGCLS+P V+R + + + ++ Q + Sbjct: 65 ES--KDDPMVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAFEL 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|302186428|ref|ZP_07263101.1| peptide deformylase [Pseudomonas syringae pv. syringae 642] Length = 168 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 105/156 (67%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + + A+G Sbjct: 67 RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLATC+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLATCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162 >gi|40062663|gb|AAR37584.1| polypeptide deformylase [uncultured marine bacterium 313] Length = 185 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 118/175 (67%), Gaps = 11/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ P+ +LR S +++++ D+ L+++MLE MY+ GIGLAA+Q+GV R++V Sbjct: 1 MALRKILTEPNKLLREKSLTVKEVDEDLQKLMNDMLETMYAAPGIGLAAIQVGVPKRVIV 60 Query: 61 IDL-----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 +D+ + RKNP+ F+NP+IIT S + S Y+EGCLS+P A++ R Sbjct: 61 LDIGWRDKPESTNDEKQDERKNPIYFVNPEIITKSTNNSTYEEGCLSVPGQFAEIDRPDK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++Y+D Q + + A+G+ ATC+QHE+DHL GILFID+LS+LK+ MI KK++K Sbjct: 121 CHIKYLDYYGQPKELMAEGMFATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAK 175 >gi|153003639|ref|YP_001377964.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5] gi|152027212|gb|ABS24980.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5] Length = 185 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/166 (45%), Positives = 111/166 (66%), Gaps = 1/166 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +VI+PDPIL+ V+ P+E+++ I L+D+M E MY+ DG+GLAA QI VL R++VID Sbjct: 3 REIVIWPDPILKEVANPVERVDDSIRRLLDDMAETMYAADGVGLAAPQIAVLKRVIVIDT 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + +NP+I+ ++ + + EGCLSIP DV R+A + VR +D + + Sbjct: 63 SPRQEGQKLIHLVNPEIVR-AEGETTWTEGCLSIPGEAEDVARAAKVWVRALDYHGKPFE 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA +QHE DHLNG LF+DHLS LKR++I K+M KL R Sbjct: 122 LEADELLAIAVQHETDHLNGTLFVDHLSSLKRELIRKRMKKLKTQR 167 >gi|71737781|ref|YP_272335.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558334|gb|AAZ37545.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326682|gb|EFW82727.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076] gi|320331344|gb|EFW87287.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 168 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D N + + A+G Sbjct: 67 RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRNGKPYELVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162 >gi|114568993|ref|YP_755673.1| peptide deformylase [Maricaulis maris MCS10] gi|122316781|sp|Q0ASK2|DEF_MARMM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114339455|gb|ABI64735.1| peptide deformylase [Maricaulis maris MCS10] Length = 174 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 71/170 (41%), Positives = 113/170 (66%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDPIL+ VS+P+++++ D+ L+D+ML+ MY+ DGIGLAA+Q+GV R++V Sbjct: 1 MAIREILTVPDPILKEVSQPVDQVDDDLRELMDDMLQTMYAADGIGLAAIQVGVPKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P F+NP + SD Y+EGCLS+P +++R I ++Y+D + Sbjct: 61 MDLAGSDEEAKPRYFVNPVLSDPSDTLKPYEEGCLSVPTVYDEIERPDRIHIQYLDYDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+G+ A C+QHE+DHL G+LFID+LSRLKR +K+ K+ + +D Sbjct: 121 ECEEIAEGMFAVCIQHEMDHLEGVLFIDYLSRLKRQRAVQKVKKVEKSKD 170 >gi|260574964|ref|ZP_05842966.1| peptide deformylase [Rhodobacter sp. SW2] gi|259022969|gb|EEW26263.1| peptide deformylase [Rhodobacter sp. SW2] Length = 181 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 111/165 (67%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L+++ P+ KI +I L ++MLE MY GIGLAA Q+GV +L+V+ Sbjct: 1 MKRTILIHPDPRLKKICEPVPKITVEIGRLAEDMLETMYDAPGIGLAAPQLGVTKQLIVM 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++D A PM NP + S+D S Y+EGCLS+P+ A+++R + + VR+ + Sbjct: 61 DCVKDPALTARPMAMFNPVVTWASEDLSTYEEGCLSLPNQYAEIERPSEVRVRWTGLDGV 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q + GL ATC+QHE+DHL+G LFID+L L+R MIT+KM KL Sbjct: 121 EQEEHFTGLWATCVQHEIDHLSGKLFIDYLRPLRRQMITRKMEKL 165 >gi|254487738|ref|ZP_05100943.1| peptide deformylase [Roseobacter sp. GAI101] gi|214044607|gb|EEB85245.1| peptide deformylase [Roseobacter sp. GAI101] Length = 174 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/166 (45%), Positives = 112/166 (67%), Gaps = 1/166 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++K+ +++ PDP L+++ P+ + ++ L D+ML MY GIGLAA QIGVL RL+V Sbjct: 2 VMKRNIILHPDPRLKKLCAPVTDMTDELRALADDMLATMYDAPGIGLAAPQIGVLNRLIV 61 Query: 61 ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D +++ + P++ NP++I SD S Y+EGCLSIPD ADV R A + VR++D + Sbjct: 62 MDCVKEEGEKPRPLIMFNPEVIASSDIESTYEEGCLSIPDQFADVTRPAEVDVRWIDRDG 121 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L ATC+QHE+DHL+G LFID+L L+R MIT+KM+KL Sbjct: 122 NEHTETFSKLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMTKL 167 >gi|71276449|ref|ZP_00652725.1| Formylmethionine deformylase [Xylella fastidiosa Dixon] gi|71901278|ref|ZP_00683377.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] gi|170731000|ref|YP_001776433.1| peptide deformylase [Xylella fastidiosa M12] gi|238687947|sp|B0U4M4|DEF_XYLFM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71162765|gb|EAO12491.1| Formylmethionine deformylase [Xylella fastidiosa Dixon] gi|71728969|gb|EAO31101.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] gi|167965793|gb|ACA12803.1| Peptide deformylase [Xylella fastidiosa M12] Length = 170 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/163 (48%), Positives = 111/163 (68%), Gaps = 6/163 (3%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + + E ++S L+D+M E MY+ GIGLAA Q+ V R +V+ Sbjct: 5 PILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQRFMVV 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + PMVFINP+I+T D V+QEGCLS+P ADV R+ I VR++D + Sbjct: 65 DVSEE--KNAPMVFINPEIVTREGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDRHGDE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K Sbjct: 122 QQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEK 164 >gi|86157152|ref|YP_463937.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773663|gb|ABC80500.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C] Length = 185 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/166 (45%), Positives = 109/166 (65%), Gaps = 1/166 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +VI+PDPIL+ V++P+++++ I L+D+M E MY+ DG+GLAA QI V R++VID Sbjct: 3 REIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVIDT 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + +NP+I+ + + Y EGCLSIP DV R A + VR +D + Sbjct: 63 SPRQEGQTLLHLVNPEIVRGEGELT-YTEGCLSIPGEAEDVDRFARVWVRALDRQGKPFE 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA LQHE DHLNG +F+DHLS LKR++I K+M KL R Sbjct: 122 LEADGLLAVALQHETDHLNGTMFVDHLSSLKRELIRKRMKKLKAQR 167 >gi|127514664|ref|YP_001095861.1| peptide deformylase [Shewanella loihica PV-4] gi|126639959|gb|ABO25602.1| peptide deformylase [Shewanella loihica PV-4] Length = 170 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/161 (49%), Positives = 106/161 (65%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++PI + N+++ IDNM E MY GIGLAA Q+ ++L+V+DLQD Sbjct: 9 FPDERLRTIAKPITEFNAELQTQIDNMFETMYEEKGIGLAATQVDYHHQLIVMDLQDDVE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFIN +II S DF +EGCLS+P A V R+ F+T++ +D + + ADG Sbjct: 69 R--PKVFINLEIIEKSGDF-CNEEGCLSVPGIYAKVDRAEFVTIKALDRDGNEFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 L A CLQHELDHLNG LF+D+LS LKR I +K+ K +L Sbjct: 126 LFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARLE 166 >gi|299771931|ref|YP_003733957.1| peptide deformylase [Acinetobacter sp. DR1] gi|298702019|gb|ADI92584.1| peptide deformylase [Acinetobacter sp. DR1] Length = 176 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/166 (45%), Positives = 111/166 (66%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR +++P+E++ +I L +MLE MY+ GIGLAA Q+ +L+VIDL Sbjct: 5 PILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + P+VFINPKI ++D Y+EGCLS+P V+R + + + ++ Q I Sbjct: 65 EA--KDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAFEI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|258622990|ref|ZP_05718005.1| peptide deformylase [Vibrio mimicus VM573] gi|258584773|gb|EEW09507.1| peptide deformylase [Vibrio mimicus VM573] Length = 169 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/160 (49%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+EK+ +I +ID+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 66 T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYSFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 162 >gi|161501956|ref|YP_257174.2| peptide deformylase [Pseudomonas fluorescens Pf-5] Length = 168 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+ +D+ YQEGCLS+P + +V R + ++ +D + Q + A+G Sbjct: 67 RSEPRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQPYELIAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162 >gi|15837528|ref|NP_298216.1| peptide deformylase [Xylella fastidiosa 9a5c] gi|28199634|ref|NP_779948.1| peptide deformylase [Xylella fastidiosa Temecula1] gi|182682379|ref|YP_001830539.1| peptide deformylase [Xylella fastidiosa M23] gi|54036955|sp|P63918|DEF_XYLFT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|54040743|sp|P63917|DEF_XYLFA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238691097|sp|B2I8S4|DEF_XYLF2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|9105847|gb|AAF83736.1|AE003931_13 polypeptide deformylase [Xylella fastidiosa 9a5c] gi|28057749|gb|AAO29597.1| polypeptide deformylase [Xylella fastidiosa Temecula1] gi|182632489|gb|ACB93265.1| peptide deformylase [Xylella fastidiosa M23] gi|307578661|gb|ADN62630.1| peptide deformylase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 170 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/163 (49%), Positives = 111/163 (68%), Gaps = 6/163 (3%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + + E ++S L+D+M E MY+ GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQRFMVI 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + PMVFINP+I+T D V+QEGCLS+P ADV R+ I VR++D + Sbjct: 65 DVSEE--KNVPMVFINPEIVTREGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDRHGDE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K Sbjct: 122 QQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEK 164 >gi|71898893|ref|ZP_00681060.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] gi|71731305|gb|EAO33369.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] Length = 170 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/163 (49%), Positives = 111/163 (68%), Gaps = 6/163 (3%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + + E ++S L+D+M E MY+ GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQRFMVI 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + PMVFINP+I+T D V+QEGCLS+P ADV R+ I VR++D + Sbjct: 65 DVSEE--KNVPMVFINPEIVTKEGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDRHGDE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K Sbjct: 122 QQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEK 164 >gi|78049482|ref|YP_365657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926150|ref|ZP_08187511.1| peptide deformylase [Xanthomonas perforans 91-118] gi|78037912|emb|CAJ25657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543495|gb|EGD14917.1| peptide deformylase [Xanthomonas perforans 91-118] Length = 170 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/164 (49%), Positives = 111/164 (67%), Gaps = 8/164 (4%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64 Query: 62 DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D KN P VF+NP+I++ + +YQEGCLS+P ADV R+ ITVRY+D Q Sbjct: 65 DISDE---KNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K Sbjct: 121 AQELQADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164 >gi|258626114|ref|ZP_05720965.1| peptide deformylase [Vibrio mimicus VM603] gi|262166814|ref|ZP_06034551.1| peptide deformylase [Vibrio mimicus VM223] gi|262172812|ref|ZP_06040490.1| peptide deformylase [Vibrio mimicus MB-451] gi|258581640|gb|EEW06538.1| peptide deformylase [Vibrio mimicus VM603] gi|261893888|gb|EEY39874.1| peptide deformylase [Vibrio mimicus MB-451] gi|262026530|gb|EEY45198.1| peptide deformylase [Vibrio mimicus VM223] Length = 169 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+EK+ +I ++D+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 66 T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYSFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 162 >gi|68347834|gb|AAY95440.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5] Length = 213 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 54 FPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 111 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+ +D+ YQEGCLS+P + +V R + ++ +D + Q + A+G Sbjct: 112 RSEPRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQPYELIAEG 171 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 172 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 207 >gi|262281295|ref|ZP_06059076.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202] gi|262257121|gb|EEY75858.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202] Length = 176 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/166 (45%), Positives = 111/166 (66%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR +++P+E++ +I L +MLE MY+ GIGLAA Q+ +L+VIDL Sbjct: 5 PILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDHHIQLIVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + P+VFINPKI ++D Y+EGCLS+P V+R + + + ++ Q I Sbjct: 65 EA--KDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAFEI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|114321775|ref|YP_743458.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1] gi|122310781|sp|Q0A5B9|DEF_ALHEH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114228169|gb|ABI57968.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1] Length = 178 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 76/162 (46%), Positives = 111/162 (68%), Gaps = 2/162 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++++PDP LR V+ P+ +++ DI L D+MLE MY GIGLAA Q+GV R+VV+DL + Sbjct: 6 ILVYPDPRLREVAAPVAQVDDDIRRLADDMLETMYDAQGIGLAATQVGVNQRVVVMDLAE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R+ P+V INP+I+ + + QEGCLSIP + DV+R+ I R +D + Sbjct: 66 EGARQ-PLVLINPEILD-REGAATGQEGCLSIPGFYEDVERAERIRFRALDREGRPWEQE 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+GL+A C+QHE+DHL+G LF+D+LS LKR I +K+ KLV+ Sbjct: 124 AEGLMAVCVQHEIDHLDGKLFVDYLSELKRKRIRRKLEKLVR 165 >gi|120552986|ref|YP_957337.1| peptide deformylase [Marinobacter aquaeolei VT8] gi|120322835|gb|ABM17150.1| peptide deformylase [Marinobacter aquaeolei VT8] Length = 167 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 73/162 (45%), Positives = 108/162 (66%), Gaps = 2/162 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +PDP LR +++P+E++ DI LID+M E MY GIGLAA Q+ V +++V+DL Sbjct: 3 REILEYPDPRLRTIAKPVEEVTDDIRTLIDDMFETMYDARGIGLAATQVDVHKQIIVMDL 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + P VFINPK+ + QEGCLS+P + DVKR + D + + + Sbjct: 63 SED--KTEPRVFINPKVEVLDGELEAMQEGCLSVPGFYEDVKRIEHCRITAKDRDGKEFV 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + A+GLLA C+QHE+DHLNG LF+D+LS+LKR+ I KK+ KL Sbjct: 121 LEAEGLLAVCIQHEMDHLNGKLFVDYLSQLKRNRIRKKLEKL 162 >gi|261213229|ref|ZP_05927511.1| peptide deformylase [Vibrio sp. RC341] gi|260837503|gb|EEX64206.1| peptide deformylase [Vibrio sp. RC341] Length = 190 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+EK+ +I ++D+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 27 VLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 86 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 87 T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALDRNGQEYRFE 143 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 144 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 183 >gi|262402048|ref|ZP_06078612.1| peptide deformylase [Vibrio sp. RC586] gi|262351694|gb|EEZ00826.1| peptide deformylase [Vibrio sp. RC586] Length = 169 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 79/160 (49%), Positives = 110/160 (68%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+EK+ +I +ID+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ D N Q Sbjct: 66 T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKAQDRNGQEYSFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKV 162 >gi|21244525|ref|NP_644107.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306] gi|39931168|sp|Q8PG20|DEF2_XANAC RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|21110197|gb|AAM38643.1| polypeptide deformylase [Xanthomonas axonopodis pv. citri str. 306] Length = 170 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 81/164 (49%), Positives = 111/164 (67%), Gaps = 8/164 (4%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + P+ E + L+D+M MY GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKRFMVI 64 Query: 62 DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D KN P VF+NP+I++ + +YQEGCLS+P ADV R+ ITVRY+D Q Sbjct: 65 DISD---EKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K Sbjct: 121 PQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164 >gi|330500987|ref|YP_004377856.1| peptide deformylase [Pseudomonas mendocina NK-01] gi|328915273|gb|AEB56104.1| peptide deformylase [Pseudomonas mendocina NK-01] Length = 168 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 105/156 (67%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P++ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+ + +D+ YQEGCLS+P + +V R + ++ +D + Q + A+G Sbjct: 67 KSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPYELIAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162 >gi|77456245|ref|YP_345750.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] gi|77380248|gb|ABA71761.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] Length = 168 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 105/156 (67%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+ + +D+ YQEGCLS+P + +V R + ++ +D + + + A+G Sbjct: 67 RTEPRVFINPEFESLTDEMEQYQEGCLSVPGFYENVDRPQKVKIKALDRDGKPYELIAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162 >gi|257485584|ref|ZP_05639625.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627009|ref|ZP_06459963.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647926|ref|ZP_06479269.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250] gi|330867901|gb|EGH02610.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890232|gb|EGH22893.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020] gi|330985723|gb|EGH83826.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011873|gb|EGH91929.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 168 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + + A+G Sbjct: 67 RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162 >gi|169123281|gb|ACA47112.1| peptide deformylase [Pseudomonas putida] Length = 168 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 74/157 (47%), Positives = 105/157 (66%), Gaps = 2/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP++ +DD YQEGCLS+P + +V R + V+ +D + + + A+ Sbjct: 67 RTEPRVFINPELEPLTDDMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGKPYELIAED 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKL 163 >gi|297581920|ref|ZP_06943840.1| peptide deformylase [Vibrio cholerae RC385] gi|297533787|gb|EFH72628.1| peptide deformylase [Vibrio cholerae RC385] Length = 190 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++DNMLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 27 VLTFPDDRLRTVAKPVEQVTPEIQQIVDNMLETMYAEEGIGLAATQVDIHQRIVVIDISE 86 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 87 T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 143 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 144 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 183 >gi|114800420|ref|YP_759242.1| peptide deformylase [Hyphomonas neptunium ATCC 15444] gi|123028362|sp|Q0C4V1|DEF_HYPNA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114740594|gb|ABI78719.1| peptide deformylase [Hyphomonas neptunium ATCC 15444] Length = 176 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 108/165 (65%), Gaps = 1/165 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ PDP L++VS+P+E + DI L+D+MLE MY GIGLAA+QIGV R++ Sbjct: 1 MAIREILTVPDPRLKQVSKPVEGGVTDDIRALMDDMLETMYDAPGIGLAAIQIGVPLRVI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+DL P F+NP+I+ ++ Y+EGCLS+PD V+RSA +RY+D + Sbjct: 61 VMDLAREGEEPAPRYFVNPEILETIEEKKPYEEGCLSVPDIFDQVERSARCRIRYLDYDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +A+ L A C+QHE+DHL G LFID+LSRLKRD K+ K Sbjct: 121 KQVDEWAEDLYAVCIQHEMDHLEGTLFIDYLSRLKRDRAIDKVKK 165 >gi|255319595|ref|ZP_05360807.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262380781|ref|ZP_06073934.1| peptide deformylase [Acinetobacter radioresistens SH164] gi|255303350|gb|EET82555.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262297729|gb|EEY85645.1| peptide deformylase [Acinetobacter radioresistens SH164] Length = 176 Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 74/165 (44%), Positives = 107/165 (64%), Gaps = 2/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR +++P+E++ +I L +M E MY GIGLAA Q+ +L+V+DL Sbjct: 5 PILSFPDPRLRTLAKPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + PMVFINPKI ++D Y+EGCLS+P V+R + + + ++ I Sbjct: 65 EE--KNQPMVFINPKITPLTEDTQPYEEGCLSVPQIYDKVERPSRVKIEALNLEGNAFEI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ KLV+ R Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRSR 167 >gi|330876380|gb|EGH10529.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965122|gb|EGH65382.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 168 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + + A+G Sbjct: 67 RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162 >gi|146305096|ref|YP_001185561.1| peptide deformylase [Pseudomonas mendocina ymp] gi|166198520|sp|A4XNB3|DEF_PSEMY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145573297|gb|ABP82829.1| peptide deformylase [Pseudomonas mendocina ymp] Length = 168 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 105/156 (67%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P++ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+ + +D+ YQEGCLS+P + +V R + ++ +D + Q + A+G Sbjct: 67 KSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPFELIAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162 >gi|66043290|ref|YP_233131.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a] gi|63253997|gb|AAY35093.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae B728a] gi|330957385|gb|EGH57645.1| peptide deformylase [Pseudomonas syringae pv. maculicola str. ES4326] gi|330970343|gb|EGH70409.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 168 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + + A+G Sbjct: 67 RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162 >gi|197121178|ref|YP_002133129.1| peptide deformylase [Anaeromyxobacter sp. K] gi|196171027|gb|ACG72000.1| peptide deformylase [Anaeromyxobacter sp. K] Length = 185 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 75/166 (45%), Positives = 109/166 (65%), Gaps = 1/166 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +VI+PDPIL+ V++P+++++ I L+D+M E MY+ DG+GLAA QI V R++VID Sbjct: 3 REIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVIDT 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + +NP+I+ + + Y EGCLSIP DV R A + VR +D + Sbjct: 63 SPRQEGQTLIHLVNPEIVRGEGELT-YTEGCLSIPGEAEDVDRFARVWVRALDRQGKPFE 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA LQHE DHLNG +F+DHLS LKR++I K+M KL R Sbjct: 122 LEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167 >gi|237801646|ref|ZP_04590107.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024505|gb|EGI04561.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 168 Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + + A+G Sbjct: 67 RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYEMVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162 >gi|169632177|ref|YP_001705913.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii SDF] gi|238688145|sp|B0VNL8|DEF_ACIBS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169150969|emb|CAO99588.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii] Length = 176 Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 72/166 (43%), Positives = 110/166 (66%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR +++P+E++ +I L +M E MY+ GIGLAA Q+ +L+V+DL Sbjct: 5 PILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + PMVFINPK+ +++ Y+EGCLS+P V R + + + ++ Q I Sbjct: 65 ES--KDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAFEI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLLA C+QHE+DHLNG LF+D+LS LKR + +K+ K+V+ R+ Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRVREKVEKIVRQRE 168 >gi|289664808|ref|ZP_06486389.1| peptide deformylase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667878|ref|ZP_06488953.1| peptide deformylase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 170 Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 8/164 (4%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAVPVDAAELTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64 Query: 62 DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D KN P VF+NP+I++ + +YQEGCLS+P ADV R+ ITVRY+D Q Sbjct: 65 DVSDE---KNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q ++ DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K Sbjct: 121 PQELHTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164 >gi|296115067|ref|ZP_06833709.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] gi|295978404|gb|EFG85140.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] Length = 180 Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+++ P ILR+ +R + + + + I M MY GIGLAA Q+G+ R ++D+ Sbjct: 14 PILVAPQAILRQKTRLVRPEDTAQLREAIPRMFAAMYKAPGIGLAAPQVGLGLRFALVDV 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D +NPMV INP II ++ SV +EGCLS+P+ A+V R + VRY D + Sbjct: 74 ADKDEARNPMVLINPDIIAETETMSVREEGCLSLPNQYAEVARPESVRVRYQDLEGKRHE 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I DGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K +LR Sbjct: 134 IEVDGLLATCIQHEIDHLEGILFVDHLSALKRNMIMRRLAKEQRLR 179 >gi|327482957|gb|AEA77364.1| Peptide deformylase [Vibrio cholerae LMA3894-4] Length = 169 Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 66 N--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 162 >gi|50083493|ref|YP_045003.1| peptide deformylase [Acinetobacter sp. ADP1] gi|49529469|emb|CAG67181.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter sp. ADP1] Length = 174 Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 74/166 (44%), Positives = 110/166 (66%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPD LR +++P+EK+ +I L +MLE MY GIGLAA Q+ +L+V+DL Sbjct: 5 PILSFPDARLRTIAKPVEKVTDEIRQLAADMLETMYEAPGIGLAATQVDRHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + PMVFINPKI +++ Y+EGCLS+P V R++ + + ++ N + I Sbjct: 65 EE--KDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVNRTSRVKIEAINLNDEAFEI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|254293235|ref|YP_003059258.1| peptide deformylase [Hirschia baltica ATCC 49814] gi|254041766|gb|ACT58561.1| peptide deformylase [Hirschia baltica ATCC 49814] Length = 181 Score = 156 bits (394), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 68/155 (43%), Positives = 105/155 (67%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ P+P+L+ VS+P++ + +I L+D+MLE MY GIGLAA+QIG R++V Sbjct: 1 MTIRPILTVPNPLLKEVSKPVDAVTDEIRALMDDMLETMYDAPGIGLAAIQIGEPVRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D NP F+NP+I+ + Y EGCLS+P+ ++R + ++Y++ + Sbjct: 61 MDIADKDEEPNPQYFVNPEILEKVEATVPYDEGCLSVPEIYETIERPERVQIKYLNYKGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I +A+GL ATC+QHE+DHL G LFID+LSRLKR Sbjct: 121 EVIEWAEGLYATCIQHEMDHLEGKLFIDYLSRLKR 155 >gi|319785850|ref|YP_004145325.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] gi|317464362|gb|ADV26094.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] Length = 170 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/163 (48%), Positives = 105/163 (64%), Gaps = 6/163 (3%) Query: 5 PLVIFPDPILRRVS---RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + P + L+D+M E MY GIGLAA Q+ R +VI Sbjct: 5 PILEFPDPRLRTKAAQVEPAQVTTPGFQRLVDDMFETMYEAPGIGLAATQVDQHLRFMVI 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + PMVFINP+I+ S VYQEGCLS+P ADV R+ I VR++D + Sbjct: 65 DTSED--KSAPMVFINPEIVQ-SQGGRVYQEGCLSVPGIYADVTRADTIVVRFLDREGRQ 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + ADGLLATC+QHE+DHL G LF+D+LS LKR+M+ KK++K Sbjct: 122 QELAADGLLATCIQHEMDHLEGKLFVDYLSPLKREMVRKKLAK 164 >gi|225677067|ref|ZP_03788072.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590889|gb|EEH12111.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 179 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/169 (45%), Positives = 105/169 (62%), Gaps = 8/169 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V+D+Q Sbjct: 5 PIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFVVDVQ 64 Query: 65 DHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 P + INP+I SD+ +EGCLSIP+ ++KR ++TV+Y D Sbjct: 65 LETIENEPAGYESIGKFCMINPEITELSDEQVTLKEGCLSIPEQSYEIKRPKYLTVKYRD 124 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K+ Sbjct: 125 LNNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKV 173 >gi|229530168|ref|ZP_04419557.1| peptide deformylase [Vibrio cholerae 12129(1)] gi|229332301|gb|EEN97788.1| peptide deformylase [Vibrio cholerae 12129(1)] Length = 194 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 31 VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 90 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 91 N--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 147 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 148 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 187 >gi|15640078|ref|NP_229705.1| peptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587283|ref|ZP_01677056.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121727904|ref|ZP_01680963.1| polypeptide deformylase [Vibrio cholerae V52] gi|147673376|ref|YP_001218366.1| peptide deformylase [Vibrio cholerae O395] gi|153212941|ref|ZP_01948535.1| polypeptide deformylase [Vibrio cholerae 1587] gi|153802782|ref|ZP_01957368.1| polypeptide deformylase [Vibrio cholerae MZO-3] gi|153817595|ref|ZP_01970262.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|153821925|ref|ZP_01974592.1| polypeptide deformylase [Vibrio cholerae B33] gi|153826444|ref|ZP_01979111.1| polypeptide deformylase [Vibrio cholerae MZO-2] gi|153830125|ref|ZP_01982792.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|227080283|ref|YP_002808834.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|254291093|ref|ZP_04961890.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|255746772|ref|ZP_05420718.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262155853|ref|ZP_06028975.1| peptide deformylase [Vibrio cholerae INDRE 91/1] gi|262166896|ref|ZP_06034617.1| peptide deformylase [Vibrio cholerae RC27] gi|17432954|sp|Q9KVU3|DEF1_VIBCH RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|9654439|gb|AAF93224.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548529|gb|EAX58585.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121629848|gb|EAX62263.1| polypeptide deformylase [Vibrio cholerae V52] gi|124116167|gb|EAY34987.1| polypeptide deformylase [Vibrio cholerae 1587] gi|124121695|gb|EAY40438.1| polypeptide deformylase [Vibrio cholerae MZO-3] gi|126511863|gb|EAZ74457.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|126520545|gb|EAZ77768.1| polypeptide deformylase [Vibrio cholerae B33] gi|146315259|gb|ABQ19798.1| polypeptide deformylase [Vibrio cholerae O395] gi|148874389|gb|EDL72524.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|149739830|gb|EDM54025.1| polypeptide deformylase [Vibrio cholerae MZO-2] gi|150422938|gb|EDN14888.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|227008171|gb|ACP04383.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|227011951|gb|ACP08161.1| polypeptide deformylase [Vibrio cholerae O395] gi|255735529|gb|EET90928.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262024667|gb|EEY43347.1| peptide deformylase [Vibrio cholerae RC27] gi|262030305|gb|EEY48947.1| peptide deformylase [Vibrio cholerae INDRE 91/1] Length = 169 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 66 T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 162 >gi|332702665|ref|ZP_08422753.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay] gi|332552814|gb|EGJ49858.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay] Length = 182 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/168 (47%), Positives = 111/168 (66%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +++ ++ +PD +L R S I +I ++ L +M E MY+ +GIGLAA Q+G RLVVI Sbjct: 1 MRRTILKYPDAVLARKSLEIGEITDELRQLAKDMAETMYTNEGIGLAAPQVGECCRLVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ R++ V +NPKI T ++ V +EGCLS+ YR+DV RS +TV D + + Sbjct: 61 DITGPDKREDLRVLVNPKI-TAAEGKVVSEEGCLSVSGYRSDVARSEKVTVEATDLDGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ADGLLA CLQHELDHL+G+LFID +SRLKR + KK+ KL + R Sbjct: 120 LSIEADGLLAVCLQHELDHLDGVLFIDRISRLKRSLYDKKVKKLQRER 167 >gi|292493779|ref|YP_003529218.1| peptide deformylase [Nitrosococcus halophilus Nc4] gi|291582374|gb|ADE16831.1| peptide deformylase [Nitrosococcus halophilus Nc4] Length = 167 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/160 (49%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP LRR ++P+ ++ I L D+MLE MY GIGLAA+Q+ V R+VVID+ + Sbjct: 9 YPDPRLRRKAQPVATVDESIKKLADDMLETMYQAPGIGLAAIQVNVPKRIVVIDISED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + +P+V INP+I+ + EGCLS+P+ V R+A ITVRY+D Q Q + A Sbjct: 67 KSSPLVLINPEIVARRGK-AESDEGCLSVPEIFEPVTRAAEITVRYLDREGQEQELEAQE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLATC+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 126 LLATCIQHELDHLEGKLFIDYLSTLKRQRIRKKVEKRQRL 165 >gi|220915878|ref|YP_002491182.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953732|gb|ACL64116.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1] Length = 185 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 75/166 (45%), Positives = 109/166 (65%), Gaps = 1/166 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +VI+PDPIL+ V+ P+++++ I L+D+M E MY+ DG+GLAA QI V R++VID Sbjct: 3 REIVIWPDPILKEVAHPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVIDT 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + +NP+I+ + + Y EGCLSIP DV R A + VR +D + + Sbjct: 63 SPRQEGQTLIHLVNPEIVRGEGELT-YTEGCLSIPGEAEDVDRFARVWVRALDYHGKPFE 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA LQHE DHLNG +F+DHLS LKR++I K+M KL R Sbjct: 122 LEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167 >gi|255261213|ref|ZP_05340555.1| peptide deformylase [Thalassiobium sp. R2A62] gi|255103548|gb|EET46222.1| peptide deformylase [Thalassiobium sp. R2A62] Length = 173 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 75/163 (46%), Positives = 106/163 (65%), Gaps = 1/163 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID- 62 +P++I PDP L++ + + + + + L D+ML+ MY GIGLAA QIGV+ R+ V+D Sbjct: 4 RPILIHPDPRLKKRADEVTEFDDALCVLGDDMLDTMYDAPGIGLAAPQIGVMSRVFVMDC 63 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +++ PMV +NP+I SD+ + Y EGCLSIP+ A+V R A + V + D Sbjct: 64 VKEEGEEPKPMVLVNPEITWTSDEMNTYDEGCLSIPEQYAEVDRPAEVKVTWQDVEGTQY 123 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL Sbjct: 124 EAQFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKL 166 >gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213968425|ref|ZP_03396568.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] gi|301384287|ref|ZP_07232705.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13] gi|302060151|ref|ZP_07251692.1| peptide deformylase [Pseudomonas syringae pv. tomato K40] gi|302130424|ref|ZP_07256414.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|32363153|sp|Q88B43|DEF1_PSESM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213926713|gb|EEB60265.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] gi|331017687|gb|EGH97743.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 168 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDSRLRTLAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + + A+G Sbjct: 67 RSAPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162 >gi|90019670|ref|YP_525497.1| peptide deformylase [Saccharophagus degradans 2-40] gi|123090994|sp|Q21PV5|DEF_SACD2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|89949270|gb|ABD79285.1| peptide deformylase [Saccharophagus degradans 2-40] Length = 172 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 104/160 (65%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR +++P+ K++ I LID+M E MY GIGLAA Q+ V +++VIDL Sbjct: 5 PILEFPDPRLRTIAKPVAKVDQRIRTLIDDMFETMYDAPGIGLAATQVNVHEQVLVIDLG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + K PMVFINP I + Y+EGCLS+P + V R I V +D + + +I Sbjct: 65 EET--KEPMVFINPSIEILDQEHYEYEEGCLSVPGFYEQVSRPKHIRVTALDRDGKEFVI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +GLLA C+QHE+DHLNG LF+D++S +KR I KK+ K Sbjct: 123 EPEGLLAVCVQHEMDHLNGKLFVDYVSNIKRQRIRKKLEK 162 >gi|84622203|ref|YP_449575.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899019|ref|YP_199224.2| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366143|dbj|BAE67301.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 170 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/168 (48%), Positives = 113/168 (67%), Gaps = 8/168 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 MV P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +VID+ D KN P VF+NP+I++ + + QEGCLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDVSDE---KNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLD 116 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K Sbjct: 117 RQGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164 >gi|169797633|ref|YP_001715426.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii AYE] gi|184156510|ref|YP_001844849.1| peptide deformylase [Acinetobacter baumannii ACICU] gi|213155573|ref|YP_002317618.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|215484987|ref|YP_002327228.1| peptide deformylase [Acinetobacter baumannii AB307-0294] gi|239503032|ref|ZP_04662342.1| peptide deformylase [Acinetobacter baumannii AB900] gi|260557576|ref|ZP_05829790.1| peptide deformylase [Acinetobacter baumannii ATCC 19606] gi|301346868|ref|ZP_07227609.1| peptide deformylase [Acinetobacter baumannii AB056] gi|301512296|ref|ZP_07237533.1| peptide deformylase [Acinetobacter baumannii AB058] gi|301594510|ref|ZP_07239518.1| peptide deformylase [Acinetobacter baumannii AB059] gi|332852665|ref|ZP_08434319.1| peptide deformylase [Acinetobacter baumannii 6013150] gi|332869381|ref|ZP_08438759.1| peptide deformylase [Acinetobacter baumannii 6013113] gi|332875644|ref|ZP_08443456.1| peptide deformylase [Acinetobacter baumannii 6014059] gi|169150560|emb|CAM88469.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii AYE] gi|183208104|gb|ACC55502.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU] gi|193076056|gb|ABO10651.2| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii ATCC 17978] gi|213054733|gb|ACJ39635.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|213986809|gb|ACJ57108.1| peptide deformylase [Acinetobacter baumannii AB307-0294] gi|260408749|gb|EEX02053.1| peptide deformylase [Acinetobacter baumannii ATCC 19606] gi|322506378|gb|ADX01832.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2] gi|323516246|gb|ADX90627.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715] gi|332729133|gb|EGJ60480.1| peptide deformylase [Acinetobacter baumannii 6013150] gi|332732799|gb|EGJ64015.1| peptide deformylase [Acinetobacter baumannii 6013113] gi|332736217|gb|EGJ67232.1| peptide deformylase [Acinetobacter baumannii 6014059] Length = 176 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/166 (43%), Positives = 109/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR +++P+E++ +I L +M E MY+ GIGLAA Q+ +L+V+DL Sbjct: 5 PILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + PMVFINPK+ +++ Y+EGCLS+P V R + + + ++ Q I Sbjct: 65 ES--KDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAFEI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKIVRQRE 168 >gi|58424802|gb|AAW73839.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 183 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/168 (48%), Positives = 113/168 (67%), Gaps = 8/168 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 MV P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 14 MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 73 Query: 58 LVVIDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +VID+ D KN P VF+NP+I++ + + QEGCLS+P ADV R+ ITVRY+D Sbjct: 74 FMVIDVSDE---KNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLD 129 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K Sbjct: 130 RQGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 177 >gi|146280418|ref|YP_001170571.1| peptide deformylase [Pseudomonas stutzeri A1501] gi|158514117|sp|A4VFH8|DEF_PSEU5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145568623|gb|ABP77729.1| polypeptide deformylase [Pseudomonas stutzeri A1501] gi|327478634|gb|AEA81944.1| peptide deformylase [Pseudomonas stutzeri DSM 4166] Length = 168 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 73/157 (46%), Positives = 104/157 (66%), Gaps = 2/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P++ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVDVVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+ +D YQEGCLS+P + +V R + ++ +D + + + A+G Sbjct: 67 RSEPRVFINPEFEPLTDQMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPYELIAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K+ Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEKI 163 >gi|254851611|ref|ZP_05240961.1| peptide deformylase 2 [Vibrio cholerae MO10] gi|254847316|gb|EET25730.1| peptide deformylase 2 [Vibrio cholerae MO10] Length = 190 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 27 VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 86 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 87 T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 143 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 144 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 183 >gi|229508331|ref|ZP_04397835.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229508830|ref|ZP_04398321.1| peptide deformylase [Vibrio cholerae B33] gi|229515915|ref|ZP_04405372.1| peptide deformylase [Vibrio cholerae TMA 21] gi|229517101|ref|ZP_04406547.1| peptide deformylase [Vibrio cholerae RC9] gi|229520217|ref|ZP_04409644.1| peptide deformylase [Vibrio cholerae TM 11079-80] gi|229606606|ref|YP_002877254.1| peptide deformylase [Vibrio cholerae MJ-1236] gi|229342811|gb|EEO07802.1| peptide deformylase [Vibrio cholerae TM 11079-80] gi|229346164|gb|EEO11136.1| peptide deformylase [Vibrio cholerae RC9] gi|229347015|gb|EEO11977.1| peptide deformylase [Vibrio cholerae TMA 21] gi|229354105|gb|EEO19037.1| peptide deformylase [Vibrio cholerae B33] gi|229354604|gb|EEO19526.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229369261|gb|ACQ59684.1| peptide deformylase [Vibrio cholerae MJ-1236] Length = 194 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 31 VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 90 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 91 T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 147 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 148 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 187 >gi|197286654|ref|YP_002152526.1| peptide deformylase [Proteus mirabilis HI4320] gi|227355155|ref|ZP_03839566.1| peptide deformylase [Proteus mirabilis ATCC 29906] gi|194684141|emb|CAR45570.1| peptide deformylase [Proteus mirabilis HI4320] gi|227164942|gb|EEI49789.1| peptide deformylase [Proteus mirabilis ATCC 29906] Length = 172 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/163 (49%), Positives = 108/163 (66%), Gaps = 2/163 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 L+ FPD LR+V+ P+EK++ +I LID+M+E MY+ GIGLAA Q+ V R+VVID+ + Sbjct: 6 LLHFPDERLRKVATPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVVIDVSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + R P+ INP+II+ D+ +GCLSIPD A +R ++ V+ +D N + Sbjct: 66 N--RDQPIALINPEIISTEDEIMDMMDGCLSIPDSFAPTQRFRYLKVKALDRNGDEIELE 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A L A C+QHELDHLNG LFIDHLS LKR I KK KL +L Sbjct: 124 AADLFAGCIQHELDHLNGKLFIDHLSPLKRQRIEKKQKKLSKL 166 >gi|330901114|gb|EGH32533.1| peptide deformylase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937252|gb|EGH41267.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B] gi|330976422|gb|EGH76478.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 168 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 103/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R PMV INP+I +D+ YQEGCLS+P + +V R + V+ +D + + + A+G Sbjct: 67 RSEPMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162 >gi|262191293|ref|ZP_06049487.1| peptide deformylase [Vibrio cholerae CT 5369-93] gi|262032831|gb|EEY51375.1| peptide deformylase [Vibrio cholerae CT 5369-93] Length = 190 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 27 VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRVVVIDISE 86 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 87 T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 143 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 144 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 183 >gi|298484627|ref|ZP_07002731.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160851|gb|EFI01868.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 168 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 103/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + + A+G Sbjct: 67 RSEPRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162 >gi|89092291|ref|ZP_01165245.1| peptide deformylase [Oceanospirillum sp. MED92] gi|89083379|gb|EAR62597.1| peptide deformylase [Oceanospirillum sp. MED92] Length = 171 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/165 (43%), Positives = 107/165 (64%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP LR ++ P+ ++ +I ID+M E MY+ GIGLAA Q+ + R+V Sbjct: 1 MAKLTILEYPDPRLRTIAEPVSEVTDEIRAQIDDMFETMYAAPGIGLAATQVNIHKRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + P+V INP+ ++ YQEGCLS+P + DVKR I ++ +D N + Sbjct: 61 MDISDD--QNEPLVLINPEFEVIDEELHKYQEGCLSVPGFYEDVKRPQKIKLKALDYNGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + A+GLLA C+QHELDHLNG LF+D+LS LKR+ I K+ K+ Sbjct: 119 AYELEAEGLLAVCIQHELDHLNGKLFVDYLSMLKRNRIKGKLEKI 163 >gi|254523595|ref|ZP_05135650.1| peptide deformylase [Stenotrophomonas sp. SKA14] gi|219721186|gb|EED39711.1| peptide deformylase [Stenotrophomonas sp. SKA14] Length = 170 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/163 (50%), Positives = 106/163 (65%), Gaps = 6/163 (3%) Query: 5 PLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + IE LIDNM MY GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKRFMVI 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + P VFINP+I+ D VYQEGCLS+P ADV R+ ITV+Y+D N Q Sbjct: 65 DVSEE--KNEPHVFINPEIVA-KDGGRVYQEGCLSVPGIFADVTRADTITVKYLDRNGQE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + A +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K Sbjct: 122 QQLEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAK 164 >gi|262374668|ref|ZP_06067941.1| peptide deformylase [Acinetobacter junii SH205] gi|262310458|gb|EEY91549.1| peptide deformylase [Acinetobacter junii SH205] Length = 176 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/166 (43%), Positives = 109/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR +++P+E++ DI L +MLE MY GIGLAA Q+ +L+V+DL Sbjct: 5 PILSFPDPRLRTIAKPVEEVTDDIRQLAADMLETMYEAPGIGLAATQVDHHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + PMVFINPK+ + + Y+EGCLS+P V+R + + + ++ + Q + Sbjct: 65 EE--KNQPMVFINPKVTPLTQETQPYEEGCLSVPQIYDKVERPSRVKIEAINLDGQAFEL 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 123 EADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|58584374|ref|YP_197947.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75508016|sp|Q5GTG9|DEF_WOLTR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|58418690|gb|AAW70705.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 179 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/173 (44%), Positives = 109/173 (63%), Gaps = 8/173 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V+ PD L + + IN I L+++M E MY+ +G+GLAAVQIGVL R+ V Sbjct: 1 MPKLSIVVAPDERLTTRASEVTGINDKIKELVNDMFETMYNAEGLGLAAVQIGVLKRIFV 60 Query: 61 IDLQDHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q + P+ + INP+I SD+ + +EGCLSIP+ +++R ++TV Sbjct: 61 MDIQLEDIKGEPVGYESTGKFCMINPEITELSDEQVILKEGCLSIPEQSHEIRRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K Sbjct: 121 KYKDLNNKEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAEKF 173 >gi|262376937|ref|ZP_06070164.1| peptide deformylase [Acinetobacter lwoffii SH145] gi|262308282|gb|EEY89418.1| peptide deformylase [Acinetobacter lwoffii SH145] Length = 176 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 73/166 (43%), Positives = 109/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR +++P+E++ +I L +M E MY GIGLAA Q+ +L+V+DL Sbjct: 5 PILSFPDPRLRTIAQPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ + PMVFINPKI +++ Y+EGCLS+P V R + + + ++ Q + Sbjct: 65 EN--KDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAFEL 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ KLV+ R+ Sbjct: 123 DADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRQRN 168 >gi|92114984|ref|YP_574912.1| peptide deformylase [Chromohalobacter salexigens DSM 3043] gi|123387341|sp|Q1QTJ5|DEF_CHRSD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|91798074|gb|ABE60213.1| peptide deformylase [Chromohalobacter salexigens DSM 3043] Length = 170 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/164 (45%), Positives = 106/164 (64%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPD LR + P+E ++ + L+D+MLE MY GIGLAA Q+ V R++V Sbjct: 1 MAKLTILEFPDERLRTKAAPVETVDDETRKLVDDMLETMYDAQGIGLAATQVDVHRRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R P V INP+ D+ QEGCLSIP+Y A+V R+ ++++ +D + Sbjct: 61 MDVSDD--RSQPRVLINPEYTPLGDEREPMQEGCLSIPEYYAEVPRALRVSLKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGLLA C+QHE DHL G+LF+D+LS LKRD + KKM K Sbjct: 119 PYELEADGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRVLKKMQK 162 >gi|126726109|ref|ZP_01741951.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] gi|126705313|gb|EBA04404.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] Length = 159 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/154 (50%), Positives = 107/154 (69%), Gaps = 3/154 (1%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHAHRKNP 72 +++++ PI ++ ++ L D+ML MY GIGLAA QIGVL RL+V+D +++ P Sbjct: 1 MKKIATPIVDLSDELRVLADDMLATMYEAPGIGLAAPQIGVLERLIVLDCVKEEGADPRP 60 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQHQIIYADGLLA 131 + NP+I SD+ SVY EGCLSIP+ A+V R A ++VR+M + A+H + DGL A Sbjct: 61 VAMFNPEITASSDELSVYDEGCLSIPEIYAEVTRPAEVSVRWMGLDGAEHNETF-DGLWA 119 Query: 132 TCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 TC+QHE+DHLNG LFID+L LKR MIT+KM KL Sbjct: 120 TCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKL 153 >gi|146291135|ref|YP_001181559.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|145562825|gb|ABP73760.1| peptide deformylase [Shewanella putrefaciens CN-32] Length = 170 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 105/160 (65%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++PI + ++++ IDNM E MY GIGLAA Q+ +L+V+DLQD Sbjct: 9 FPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+II+ S DF +EGCLS+P A V R+ F+TV+ +D N I+ AD Sbjct: 69 R--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGCEFIVEADE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|166713738|ref|ZP_02244945.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 170 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 8/164 (4%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAVPVDAAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64 Query: 62 DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D KN P VF+NP+I++ + + QEGCLS+P ADV R+ ITVRY+D Q Sbjct: 65 DVSDE---KNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLDRQGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K Sbjct: 121 AQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164 >gi|88705378|ref|ZP_01103089.1| Formylmethionine deformylase [Congregibacter litoralis KT71] gi|88700468|gb|EAQ97576.1| Formylmethionine deformylase [Congregibacter litoralis KT71] Length = 168 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 74/161 (45%), Positives = 104/161 (64%), Gaps = 2/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR V++P+E ++ D+ LIDNM+E MY GIGLAA Q+ V RL+V+D+ ++ Sbjct: 9 FPDPRLRTVAKPVESVDDDLRALIDNMIETMYEASGIGLAATQVNVHKRLLVLDISEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R PMVFINP++ D Y EGCLS+P + +V R + V + + + DG Sbjct: 67 RDQPMVFINPEVTVLDDTLGSYDEGCLSVPGFYEEVNRPRKVRVEALGRDGESFSQELDG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 L A CLQHE+DHL+G LF+D++S LKR+ I K+ K +LR Sbjct: 127 LAAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167 >gi|332304409|ref|YP_004432260.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171738|gb|AEE20992.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 169 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 82/160 (51%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V+ P+EKI+ I LI +MLE M +GIGLAA QI V R+VVID+ + Sbjct: 9 FPDERLRTVAAPVEKIDGTIKTLISDMLETMKDENGIGLAATQINVHKRVVVIDVSEK-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + NP VFINP+I T D ++ +EGCLS+P+ A V+R+ ITV +D N + ADG Sbjct: 67 QDNPQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAETITVNALDENGDAFTLDADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHELDHL G LF+D+LS LKR I K+ K +L Sbjct: 126 LLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165 >gi|190576007|ref|YP_001973852.1| peptide deformylase [Stenotrophomonas maltophilia K279a] gi|229487565|sp|B2FIR4|DEF_STRMK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|190013929|emb|CAQ47569.1| putative peptide deformylase [Stenotrophomonas maltophilia K279a] Length = 170 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 82/163 (50%), Positives = 106/163 (65%), Gaps = 6/163 (3%) Query: 5 PLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + IE LIDNM MY GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKRFMVI 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + P VFINP+I+ D VYQEGCLS+P ADV R+ ITV+Y+D N Q Sbjct: 65 DVSEE--KNEPHVFINPEIVA-KDGGRVYQEGCLSVPGIFADVTRADTITVKYLDRNGQE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + A +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K Sbjct: 122 QQMEAGDVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAK 164 >gi|325924333|ref|ZP_08185877.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] gi|325545198|gb|EGD16508.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] Length = 170 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 8/164 (4%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAVPVDAAEVTSPAFQRLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64 Query: 62 DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D KN P VFINP+I++ + +YQEGCLS+P ADV R+ ITVRY+D + Q Sbjct: 65 DVSDE---KNLPQVFINPQIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYVDRHGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K Sbjct: 121 AQELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164 >gi|226952176|ref|ZP_03822640.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase) [Acinetobacter sp. ATCC 27244] gi|294648885|ref|ZP_06726341.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] gi|226837014|gb|EEH69397.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase) [Acinetobacter sp. ATCC 27244] gi|292825276|gb|EFF84023.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] Length = 176 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 71/166 (42%), Positives = 109/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR +++P+E++ +I L +MLE MY GIGLAA Q+ +L+V+DL Sbjct: 5 PILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYEAPGIGLAATQVDHHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + PMVFINPK+ +++ Y+EGCLS+P V+R + + + ++ Q + Sbjct: 65 EE--KNQPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAFEL 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 123 EADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|260774554|ref|ZP_05883467.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] gi|260610460|gb|EEX35666.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] Length = 170 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 109/160 (68%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+EK+ +I ++D+MLE MY +GIGLAA Q+ + R+VVID+ D Sbjct: 6 VLTFPDDRLRTVAKPVEKVTPEIQKIVDDMLETMYDEEGIGLAATQVDIHQRIVVIDVSD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 66 S--RDQPMVLINPQIIEKRGEDGI-EEGCLSVPGSRALVPRAAEVTVKALNRDGEEYTFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKI 162 >gi|42520067|ref|NP_965982.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila melanogaster] gi|81700107|sp|Q73IJ6|DEF_WOLPM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|42409804|gb|AAS13916.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 179 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 76/169 (44%), Positives = 106/169 (62%), Gaps = 8/169 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V+D+Q Sbjct: 5 PIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFVMDIQ 64 Query: 65 DHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 P + INP+I SD+ + +EGCLSIP+ ++KR ++TV+Y D Sbjct: 65 LETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTVKYKD 124 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K+ Sbjct: 125 LDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKV 173 >gi|298501230|ref|ZP_07011029.1| peptide deformylase [Vibrio cholerae MAK 757] gi|297540102|gb|EFH76164.1| peptide deformylase [Vibrio cholerae MAK 757] Length = 206 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 43 VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 102 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 103 T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 159 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 160 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 199 >gi|104779338|ref|YP_605836.1| peptide deformylase [Pseudomonas entomophila L48] gi|95108325|emb|CAK13019.1| peptide deformylase 1 [Pseudomonas entomophila L48] Length = 168 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV+DL + Sbjct: 9 FPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP + + D YQEGCLS+P + +V R + V+ D + + + A+G Sbjct: 67 RSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPYELEAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K Sbjct: 127 LLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEK 162 >gi|254453655|ref|ZP_05067092.1| peptide deformylase [Octadecabacter antarcticus 238] gi|198268061|gb|EDY92331.1| peptide deformylase [Octadecabacter antarcticus 238] Length = 159 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 73/150 (48%), Positives = 103/150 (68%), Gaps = 1/150 (0%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHAHRKNPMVF 75 ++ P+ ++ + L D+MLE MY GIGLAA Q+G++ R++V+D ++D PMV Sbjct: 1 MADPVATVDKTLHALADDMLETMYDAPGIGLAAPQLGIMQRMLVMDCIKDDMETPQPMVL 60 Query: 76 INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 INP++I S + ++Y EGCLSIP+ A+V+RSA + V +MD N + Q L ATC+Q Sbjct: 61 INPRVIAASSETNIYDEGCLSIPEQYAEVERSAVVKVEWMDLNGKTQQDEFSDLWATCVQ 120 Query: 136 HELDHLNGILFIDHLSRLKRDMITKKMSKL 165 HE+DHLNG LFID+L LKR MIT+KM KL Sbjct: 121 HEIDHLNGKLFIDYLKPLKRQMITRKMQKL 150 >gi|120596857|ref|YP_961431.1| peptide deformylase [Shewanella sp. W3-18-1] gi|120556950|gb|ABM22877.1| peptide deformylase [Shewanella sp. W3-18-1] Length = 170 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 105/160 (65%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++PI + ++++ IDNM E MY GIGLAA Q+ +L+V+DLQD Sbjct: 9 FPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEIE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+II+ S DF +EGCLS+P A V R+ F+TV+ +D N I+ AD Sbjct: 69 R--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGCEFIVEADE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|325913842|ref|ZP_08176201.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] gi|325539917|gb|EGD11554.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] Length = 170 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 77/164 (46%), Positives = 108/164 (65%), Gaps = 6/164 (3%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAVPVDATEVTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + P VFINP+I+T + VYQEGCLS+P ADV R+ I VRY+D Q Sbjct: 65 DVSEE--KNAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAIAVRYLDRQGQA 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K+ Sbjct: 122 HELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKM 165 >gi|167855659|ref|ZP_02478417.1| peptide deformylase [Haemophilus parasuis 29755] gi|219871701|ref|YP_002476076.1| peptide deformylase [Haemophilus parasuis SH0165] gi|254767590|sp|B8F726|DEF_HAEPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167853231|gb|EDS24487.1| peptide deformylase [Haemophilus parasuis 29755] gi|219691905|gb|ACL33128.1| N-formylmethionyl-tRNA deformylase [Haemophilus parasuis SH0165] Length = 170 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L +V +P+E +++++ IDNM + MY +GIGLAA Q+ VL R++ ID++ Sbjct: 6 VLIYPDENLAKVCQPVETVDAELNTFIDNMFDTMYEHEGIGLAAPQVNVLKRVITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + N +V INP+I+ S + + +EGCLSIP RA V R +TV+ ++ Q + Sbjct: 65 -GDKTNQIVLINPEILESSGETGI-EEGCLSIPGCRALVPRKEKLTVKALNREGQTFTLE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLLA C+QHE+DHLNG+LF+DH+S+LKR I +KM KL Sbjct: 123 ADGLLAICIQHEIDHLNGVLFVDHISQLKRQRIKEKMLKL 162 >gi|260554281|ref|ZP_05826531.1| peptide deformylase 1 [Acinetobacter sp. RUH2624] gi|260404590|gb|EEW98110.1| peptide deformylase 1 [Acinetobacter sp. RUH2624] Length = 176 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 72/166 (43%), Positives = 108/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR +++P+E++ +I L +M E MY+ GIGLAA Q+ +L+V+DL Sbjct: 5 PILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + PMVFINPKI +++ Y+EGCLS+P V R + + + ++ Q I Sbjct: 65 ES--KDEPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAFEI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLLA C+QHE+DHL G LF+D+LS LKR +K+ K+V+ R+ Sbjct: 123 EADGLLAVCIQHEMDHLKGKLFVDYLSPLKRQRAREKVEKIVRQRE 168 >gi|192358847|ref|YP_001984035.1| peptide deformylase [Cellvibrio japonicus Ueda107] gi|238692437|sp|B3PGY7|DEF_CELJU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|190685012|gb|ACE82690.1| peptide deformylase [Cellvibrio japonicus Ueda107] Length = 169 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR V++P+ +++ I L+D+M E MY GIGLAA Q+ V R+VVID+ Sbjct: 5 PILEFPDPRLRTVAKPVTQVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + P+VFINP+I ++ S Y EGCLS+P + V+R I V+ +D + Sbjct: 65 ED--KSQPLVFINPEIEVLDEELSQYDEGCLSVPGFYETVERPGHIRVKALDRAGNAFEL 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 GLLA C+QHELDHLNG LF+DH+S KR I K+ K Sbjct: 123 QPQGLLAVCIQHELDHLNGKLFVDHISPFKRSRIRSKLEK 162 >gi|89074760|ref|ZP_01161218.1| peptide deformylase [Photobacterium sp. SKA34] gi|89049524|gb|EAR55085.1| peptide deformylase [Photobacterium sp. SKA34] Length = 169 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E I +I +ID+MLE MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVVIDVSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV +NPKI + + +EGCLS+P R V R+A ++V +D N + Sbjct: 66 E--RNQPMVLVNPKITEEHGEDGI-EEGCLSVPTARGFVPRAAGVSVTALDRNGKEYSFK 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLLA C+QHELDHL G LF+D+LS LKR I +K+ K+ Sbjct: 123 ADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKI 162 >gi|126172288|ref|YP_001048437.1| peptide deformylase [Shewanella baltica OS155] gi|152998582|ref|YP_001364263.1| peptide deformylase [Shewanella baltica OS185] gi|160873157|ref|YP_001552473.1| peptide deformylase [Shewanella baltica OS195] gi|217971247|ref|YP_002355998.1| peptide deformylase [Shewanella baltica OS223] gi|125995493|gb|ABN59568.1| peptide deformylase [Shewanella baltica OS155] gi|151363200|gb|ABS06200.1| peptide deformylase [Shewanella baltica OS185] gi|160858679|gb|ABX47213.1| peptide deformylase [Shewanella baltica OS195] gi|217496382|gb|ACK44575.1| peptide deformylase [Shewanella baltica OS223] gi|315265382|gb|ADT92235.1| peptide deformylase [Shewanella baltica OS678] Length = 170 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 78/168 (46%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR + PI + N+++ ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFINP+II S DF +EGCLS+P A V R+ F+TV+ +D + Sbjct: 61 MDLQDEVER--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|194367357|ref|YP_002029967.1| peptide deformylase [Stenotrophomonas maltophilia R551-3] gi|238693439|sp|B4SKH7|DEF_STRM5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194350161|gb|ACF53284.1| peptide deformylase [Stenotrophomonas maltophilia R551-3] Length = 170 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 80/163 (49%), Positives = 107/163 (65%), Gaps = 6/163 (3%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ FPDP LR + I E L+DNM + MY GIGLAA Q+ V R +VI Sbjct: 5 PILEFPDPRLRTKAALIDAAEVTTPAFQELVDNMFQTMYDAPGIGLAATQVDVHKRFMVI 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + P VFINP+I+ D VYQEGCLS+P ADV R+ ITV+Y+D + Q Sbjct: 65 DVSEE--KNEPHVFINPEIVA-KDGGRVYQEGCLSVPGIFADVTRADTITVKYLDRDGQQ 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + A +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K Sbjct: 122 QELEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAK 164 >gi|170719274|ref|YP_001746962.1| peptide deformylase [Pseudomonas putida W619] gi|169757277|gb|ACA70593.1| peptide deformylase [Pseudomonas putida W619] Length = 168 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV+DL + Sbjct: 9 FPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQIVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP + + D YQEGCLS+P + +V R + V+ D + + + A+G Sbjct: 67 RSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPFELEAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K Sbjct: 127 LLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEK 162 >gi|119773185|ref|YP_925925.1| peptide deformylase [Shewanella amazonensis SB2B] gi|119765685|gb|ABL98255.1| peptide deformylase [Shewanella amazonensis SB2B] Length = 167 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 101/156 (64%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++P+ + + + ID+M E MY +GIGLAA Q+ RL+V+DLQD Sbjct: 9 FPDERLRTVAKPVTEFTPALQSQIDDMFETMYEENGIGLAATQVDFHQRLIVMDLQDEVE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+I+ S DF +EGCLS+P A V R+ ITV+ +D N + ADG Sbjct: 69 R--PKVFINPEIVAKSGDF-CNEEGCLSVPGVYAKVDRAELITVKALDRNGNEFTVEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L A CLQHE+DHL G LF+D+LS LKR I +K+ K Sbjct: 126 LFAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEK 161 >gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase Complexed With Antibiotic Actinonin Length = 167 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 8 FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + A+G Sbjct: 66 KSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 126 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 161 >gi|15595217|ref|NP_248709.1| peptide deformylase [Pseudomonas aeruginosa PAO1] gi|107099012|ref|ZP_01362930.1| hypothetical protein PaerPA_01000019 [Pseudomonas aeruginosa PACS2] gi|218888765|ref|YP_002437629.1| peptide deformylase [Pseudomonas aeruginosa LESB58] gi|254237739|ref|ZP_04931062.1| polypeptide deformylase [Pseudomonas aeruginosa C3719] gi|254243131|ref|ZP_04936453.1| polypeptide deformylase [Pseudomonas aeruginosa 2192] gi|296386491|ref|ZP_06875990.1| peptide deformylase [Pseudomonas aeruginosa PAb1] gi|17432949|sp|Q9I7A8|DEF_PSEAE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase [Pseudomonas aeruginosa PAO1] gi|126169670|gb|EAZ55181.1| polypeptide deformylase [Pseudomonas aeruginosa C3719] gi|126196509|gb|EAZ60572.1| polypeptide deformylase [Pseudomonas aeruginosa 2192] gi|218768988|emb|CAW24746.1| polypeptide deformylase [Pseudomonas aeruginosa LESB58] Length = 168 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + A+G Sbjct: 67 KSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162 >gi|258404153|ref|YP_003196895.1| peptide deformylase [Desulfohalobium retbaense DSM 5692] gi|257796380|gb|ACV67317.1| peptide deformylase [Desulfohalobium retbaense DSM 5692] Length = 167 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +PDP+L R + P+ +I+ ++ L +M+E MY+ GIGLAA Q+G +RL+ +D+ Sbjct: 5 ICTYPDPVLARRAEPVAEISEEVRQLASDMVETMYANQGIGLAAPQVGKSWRLITVDISG 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++ + +NP+I + D + +EGCLS+P++R+ V+R+A + V D + + Sbjct: 65 PENQTELVTLVNPEI-QWRDGETETEEGCLSVPEFRSKVQRAAKVRVTGQDLDGNAVDME 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLLA CLQHE+DHL G + +DH+SRLKR M TKK+SK Sbjct: 124 ADGLLAVCLQHEIDHLEGTIILDHVSRLKRSMYTKKVSKW 163 >gi|229524948|ref|ZP_04414353.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] gi|229338529|gb|EEO03546.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] Length = 194 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 31 VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 90 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 91 T--RDLPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 147 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 148 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 187 >gi|49081366|gb|AAT50122.1| PA0019 [synthetic construct] Length = 169 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + A+G Sbjct: 67 KSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162 >gi|262371336|ref|ZP_06064654.1| peptide deformylase 1 [Acinetobacter johnsonii SH046] gi|262313673|gb|EEY94722.1| peptide deformylase 1 [Acinetobacter johnsonii SH046] Length = 177 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 71/165 (43%), Positives = 106/165 (64%), Gaps = 2/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR ++ P+E++ +I L +M E MY GIGLAA Q+ +L+V+DL Sbjct: 5 PILSFPDPRLRTIAEPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +H + P+VFINPK+ +++ Y+EGCLS+P V+R + + + ++ Q I Sbjct: 65 EH--KDQPLVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAFEI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 AD LLA C+QHE+DHLNG LF+D+LS LKR +K+ KL + R Sbjct: 123 EADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLTRQR 167 >gi|99034823|ref|ZP_01314739.1| hypothetical protein Wendoof_01000437 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 179 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 76/169 (44%), Positives = 105/169 (62%), Gaps = 8/169 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V+D+Q Sbjct: 5 PIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFVMDIQ 64 Query: 65 DHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 P + INP+I SD+ + +EGCLSIP+ +KR ++TV+Y D Sbjct: 65 LETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHKIKRPKYLTVKYKD 124 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K+ Sbjct: 125 LDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKV 173 >gi|254515964|ref|ZP_05128024.1| peptide deformylase [gamma proteobacterium NOR5-3] gi|219675686|gb|EED32052.1| peptide deformylase [gamma proteobacterium NOR5-3] Length = 168 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 74/161 (45%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR V++P+E ++ + LIDNMLE MY+ GIGLAA Q+ V RL+V+D ++ Sbjct: 9 FPDPRLRTVAKPVEVVDDALRTLIDNMLETMYAASGIGLAATQVNVHQRLLVLDTSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +PM+FINP++ D Y EGCLS+P + +V R I V + + + + DG Sbjct: 67 RDSPMIFINPQVTILDDTLGSYDEGCLSVPGFYEEVNRPRTIRVEALGRDGKAFSLELDG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 L A CLQHE+DHL+G LF+D++S LKR+ I K+ K +LR Sbjct: 127 LTAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167 >gi|294138834|ref|YP_003554812.1| polypeptide deformylase [Shewanella violacea DSS12] gi|293325303|dbj|BAJ00034.1| polypeptide deformylase [Shewanella violacea DSS12] Length = 170 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 75/161 (46%), Positives = 104/161 (64%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++P+ + N+ + IDNM E MY GIGLAA Q+ +L+++DLQD Sbjct: 9 FPDERLRTFAKPVTEFNTGLQTQIDNMFETMYEEKGIGLAATQVDYHRQLIIMDLQDEEE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFIN +I+ S FS +EGCLS+P AD++R+ +T++ +D + + ADG Sbjct: 69 R--PKVFINLEIVASSGHFS-NEEGCLSVPGIYADIERAEHVTIKALDRDGNEFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA CLQHELDHL G LF+D+LS LKR I +K+ K +L Sbjct: 126 LLAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARLE 166 >gi|319424441|gb|ADV52515.1| peptide deformylase [Shewanella putrefaciens 200] Length = 170 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 105/160 (65%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++PI + ++++ IDNM E MY GIGLAA Q+ +L+V+DLQD Sbjct: 9 FPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+II+ S DF +EGCLS+P A V R+ F+TV+ +D N I+ A+ Sbjct: 69 R--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGCEFIVEANE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|83642943|ref|YP_431378.1| peptide deformylase [Hahella chejuensis KCTC 2396] gi|123767556|sp|Q2SQX1|DEF_HAHCH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|83630986|gb|ABC26953.1| peptide deformylase [Hahella chejuensis KCTC 2396] Length = 168 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 77/169 (45%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR V++P++ ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MSKLQILEFPDPRLRTVAKPVQTFDAALGQLIDDMFETMYEAPGIGLAATQVDVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + PMVFINP I D QEGCLS+P + V R + +R D N + Sbjct: 61 IDVSED--KSEPMVFINPDIEVLDGDPEEMQEGCLSVPGFYESVTRIPHVKIRAQDRNGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A GLLA CLQHE+DHLNG L++D+LS +KR I KK+ K ++R Sbjct: 119 SYEMEARGLLAVCLQHEVDHLNGKLYVDYLSNVKRTRIRKKLEKQHKMR 167 >gi|34809567|pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase Complexed With Antibiotic Actinonin gi|34809568|pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase Complexed With Antibiotic Actinonin Length = 171 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + A+G Sbjct: 67 KSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162 >gi|58697042|ref|ZP_00372504.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans] gi|58698050|ref|ZP_00372974.1| peptide deformylase [Wolbachia endosymbiont of Drosophila ananassae] gi|225629944|ref|YP_002726735.1| polypeptide deformylase [Wolbachia sp. wRi] gi|254767611|sp|C0R5A2|DEF_WOLWR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|58535407|gb|EAL59482.1| peptide deformylase [Wolbachia endosymbiont of Drosophila ananassae] gi|58536692|gb|EAL59978.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans] gi|225591925|gb|ACN94944.1| polypeptide deformylase [Wolbachia sp. wRi] Length = 179 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 75/169 (44%), Positives = 105/169 (62%), Gaps = 8/169 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V+D+Q Sbjct: 5 PIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFVVDVQ 64 Query: 65 DHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 P + INP+I SD+ + +EGCLSIP+ ++KR ++TV+Y D Sbjct: 65 LETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTVKYKD 124 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM K K+ Sbjct: 125 LDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAITKAQKI 173 >gi|157959861|ref|YP_001499895.1| peptide deformylase [Shewanella pealeana ATCC 700345] gi|157844861|gb|ABV85360.1| peptide deformylase [Shewanella pealeana ATCC 700345] Length = 199 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 77/161 (47%), Positives = 104/161 (64%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++PI + N + ID+M E MY GIGLAA Q+ ++L+V+DLQD Sbjct: 38 FPDERLRTVAQPITEFNPALQTQIDDMFETMYEEKGIGLAATQVDYHHQLIVMDLQDEVE 97 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFIN +I S DF +EGCLS+P A V R+ F+T++ +D + + + ADG Sbjct: 98 R--PKVFINLEITAKSGDF-CNEEGCLSVPGVYAKVDRAEFVTIKALDRDGKEFTLEADG 154 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 L A CLQHELDHL+G LF+D+LS LKR I +K+ K +L Sbjct: 155 LFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARLE 195 >gi|167621968|ref|YP_001672262.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] gi|167351990|gb|ABZ74603.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] Length = 199 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/161 (47%), Positives = 105/161 (65%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++PI + N+ + ID+M E MY GIGLA+ Q+ ++L+V+DLQD Sbjct: 38 FPDERLRTVAKPIAEFNAALQTQIDDMFETMYEEKGIGLASTQVNYHHQLIVMDLQDDVE 97 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFIN +I+ S DF +EGCLS+P A V R+ F+T++ +D + + ADG Sbjct: 98 R--PKVFINLEIVAKSGDF-CNEEGCLSVPGVYAKVDRAEFVTIKALDRDGNEFSLEADG 154 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 L A CLQHELDHL+G LF+D+LS LKR I +K+ K +L Sbjct: 155 LFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARLE 195 >gi|152988653|ref|YP_001345416.1| peptide deformylase [Pseudomonas aeruginosa PA7] gi|150963811|gb|ABR85836.1| peptide deformylase [Pseudomonas aeruginosa PA7] Length = 168 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 103/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+ +++ YQEGCLS+P + +V R + ++ +D + + A+G Sbjct: 67 KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPFEEVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAVCIQHECDHLNGRLFVDYLSTLKRDRIRKKLEK 162 >gi|109896355|ref|YP_659610.1| peptide deformylase [Pseudoalteromonas atlantica T6c] gi|109698636|gb|ABG38556.1| peptide deformylase [Pseudoalteromonas atlantica T6c] Length = 169 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 79/160 (49%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V+ P++KI+S I L+ +MLE M +GIGLAA QI V R+VVID+ + Sbjct: 9 FPDERLRTVATPVDKIDSSIKTLVSDMLETMKDENGIGLAATQINVHKRVVVIDVSEEQD 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+I T D ++ +EGCLS+P+ A V+R+ +TV+ +D N + ADG Sbjct: 69 K--PQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAEKVTVKALDENGDAFTLDADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHELDHL G LF+D+LS LKR I K+ K +L Sbjct: 126 LLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165 >gi|326319402|ref|YP_004237074.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376238|gb|ADX48507.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 169 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 109/160 (68%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P++ ++ + L+D+MLE MY GIGLAA Q+ V R++ ID+ Sbjct: 5 PILCYPDPRLHKVAQPVQAVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIITIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P+V INP+I+ S+D V +EGCLS+P V+RS+ + V+ +D Q ++I Sbjct: 65 ED--RDTPLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSSAVRVQALDAQGQSRVI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHE+DHL G +F+++LS LKR I KM K Sbjct: 123 EAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLK 162 >gi|304313372|ref|YP_003812970.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1] gi|301799105|emb|CBL47348.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1] Length = 170 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 105/156 (67%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR ++P+ + ++ + L ++MLE MY GIGLAA QI V +++V+D+ + Sbjct: 9 FPDPRLRTQAKPVTQFDAALRKLTEDMLETMYDAPGIGLAATQINVHQQVIVMDVSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + PMVFINP+I + Y+EGCLS+P + +V R I V+ ++ + + ADG Sbjct: 67 KSQPMVFINPQITVVGGE-KEYEEGCLSVPGFHENVVRPDVIHVKALNAQGEAFELQADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LL+ CLQHE+DHLNG+LF+DH+SRLKRD I +K+ K Sbjct: 126 LLSVCLQHEMDHLNGVLFVDHISRLKRDRIRRKLEK 161 >gi|116053739|ref|YP_788174.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|313111460|ref|ZP_07797261.1| polypeptide deformylase [Pseudomonas aeruginosa 39016] gi|115588960|gb|ABJ14975.1| polypeptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|310883763|gb|EFQ42357.1| polypeptide deformylase [Pseudomonas aeruginosa 39016] Length = 168 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+ +++ YQEGCLS+P + +V R + ++ +D + A+G Sbjct: 67 KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162 >gi|330993401|ref|ZP_08317336.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1] gi|329759431|gb|EGG75940.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1] Length = 180 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/161 (44%), Positives = 106/161 (65%), Gaps = 1/161 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+++ P +LR+ +R + + D + +I M MY GIGLAA Q+G+ R ++D+ Sbjct: 14 PILVAPQAVLRQKTRLVRPEDMDGLRTIIPRMFAAMYQAPGIGLAAPQVGLGMRFAIVDV 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D +NP+V INP++I +D + +EGCLS+P+ A+V R + VRY D + Q Sbjct: 74 SDKDGPRNPIVLINPEVIAETDSMAAREEGCLSLPNQYAEVVRPEAVRVRYQDMEGKVQE 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + AD LLATCLQHE+DHL GILF+DHLS LKR+MI ++++K Sbjct: 134 LEADDLLATCLQHEIDHLEGILFVDHLSTLKRNMIMRRLAK 174 >gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From Pseudomonas Aeruginosa gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From Pseudomonas Aeruginosa gi|47168958|pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide Deformylase Inhibitors gi|47168959|pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide Deformylase Inhibitors Length = 180 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 21 FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 78 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+ +++ YQEGCLS+P + +V R + ++ +D + A+G Sbjct: 79 KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 138 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 139 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 174 >gi|229587596|ref|YP_002869715.1| peptide deformylase [Pseudomonas fluorescens SBW25] gi|229359462|emb|CAY46303.1| peptide deformylase [Pseudomonas fluorescens SBW25] Length = 168 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ + L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 FPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P V+INP+ +D+ YQEGCLS+P++ +V+R + ++ +D + + + A+G Sbjct: 67 RSEPRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPFELIAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162 >gi|90406714|ref|ZP_01214907.1| peptide deformylase [Psychromonas sp. CNPT3] gi|90312167|gb|EAS40259.1| peptide deformylase [Psychromonas sp. CNPT3] Length = 170 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/157 (46%), Positives = 105/157 (66%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR V++ + +++++ +M++ MY +G+GLAA Q+ + R+VVID+ D Sbjct: 9 FPDPRLRTVAKKVSNFTPELIDIAQDMIDTMYEENGVGLAATQVDIHQRIVVIDVSDE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +P+V INP+II+ S + QEGCLS+PD AD+ R+ F+TV++ D Q I AD Sbjct: 67 RDDPIVLINPEIISQSGE-ECSQEGCLSVPDINADITRAEFVTVKFQDVQGNAQQIEADS 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHELDHL G LFID+LS K+ I K+ KL Sbjct: 126 LLAVCIQHELDHLIGKLFIDYLSPFKQKRIKTKLEKL 162 >gi|170724408|ref|YP_001758434.1| peptide deformylase [Shewanella woodyi ATCC 51908] gi|169809755|gb|ACA84339.1| peptide deformylase [Shewanella woodyi ATCC 51908] Length = 169 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 101/156 (64%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ + N+D+ IDNM E MY GIGLAA Q+ ++L+V+DLQD Sbjct: 9 FPDEKLRTIAKPVTEFNADLQTQIDNMFETMYEEKGIGLAATQVDYHHQLIVMDLQDEVE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFIN +I+ S F +EGCLS+P A+V+R+ +T++ +D + ADG Sbjct: 69 R--PKVFINLEIVASSGHFE-NEEGCLSVPGIFANVERAEHVTIKALDREGNEFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L CLQHELDHL G LF+D+LS LKR I +K+ K Sbjct: 126 LFGICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEK 161 >gi|54310617|ref|YP_131637.1| peptide deformylase [Photobacterium profundum SS9] gi|46915060|emb|CAG21835.1| Putative polypeptide deformylase [Photobacterium profundum SS9] Length = 169 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 108/160 (67%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++IFPD LR +++P+E I DI N++D+MLE MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLIFPDERLRTIAKPVEAITPDIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I + + +EGCLS+P RA V R+A ++V+ +D + Sbjct: 66 E--RDQPMVLINPEITDKRGEDGI-EEGCLSVPGSRALVSRAAEVSVKALDRDGNPFSFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKM 162 >gi|330720123|gb|EGG98527.1| Peptide deformylase [gamma proteobacterium IMCC2047] Length = 168 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/165 (46%), Positives = 104/165 (63%), Gaps = 2/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR + PI ++ I L D+MLE MY GIGLAA Q+ V R+VVID+ Sbjct: 5 PILEFPDPRLRNKALPINDVDDSIRKLADDMLETMYYAPGIGLAATQVNVQKRIVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + P+VFINP++ D F EGCLS+P + V+R I VR D N + I Sbjct: 65 ED--KSQPLVFINPEVEVIGDGFEEMDEGCLSVPGFYETVQRPDHIKVRAQDRNGETFEI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DG+LA C+QHE+DHL+G LF+D+LS LKR I KK+ K+ + R Sbjct: 123 EDDGMLAVCIQHEIDHLDGKLFVDYLSPLKRQRIRKKLEKIHRQR 167 >gi|27364480|ref|NP_760008.1| peptide deformylase [Vibrio vulnificus CMCP6] gi|31076651|sp|Q8DDE3|DEF1_VIBVU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|27360599|gb|AAO09535.1| peptide deformylase [Vibrio vulnificus CMCP6] Length = 170 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 109/160 (68%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 66 S--RNEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGHEFTLE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|332525408|ref|ZP_08401568.1| peptide deformylase [Rubrivivax benzoatilyticus JA2] gi|332108677|gb|EGJ09901.1| peptide deformylase [Rubrivivax benzoatilyticus JA2] Length = 172 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/164 (42%), Positives = 108/164 (65%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ +PDP L +V++P+ +++ + L+ +MLE MY ++G+GLAA Q+ V RL V Sbjct: 1 MAQLPILRYPDPRLHKVAKPVAAVDARVKQLVADMLETMYESEGVGLAATQVDVHERLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D PMVF+NP+I+ S++ +++EGCLS+P V R+A +TVR +D Sbjct: 61 MDTS--PEHDQPMVFVNPQIVARSEELVIWEEGCLSVPQVWDKVTRNARVTVRALDREGA 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I DGL A C QHE+DHL+G +F+++LS LKR+ I KM+K Sbjct: 119 EFEIALDGLAAVCAQHEIDHLDGKVFVEYLSLLKRERIKVKMAK 162 >gi|190571318|ref|YP_001975676.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018714|ref|ZP_03334522.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238058217|sp|B3CMB1|DEF_WOLPP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|190357590|emb|CAQ55031.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995665|gb|EEB56305.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 179 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/173 (42%), Positives = 106/173 (61%), Gaps = 8/173 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K P+VI PD L + + I I L+++M E MY +G+GLAAVQ+GVL R+ + Sbjct: 1 MSKLPIVIAPDERLTTRASEVIDITDKIKELVNDMFETMYYAEGLGLAAVQVGVLKRIFI 60 Query: 61 IDLQDHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P + INP+I S + + +EGCLSIP+ ++KR ++TV Sbjct: 61 MDVQPEKAEDGPAGYESTGKFCMINPEITELSGEQVILKEGCLSIPEQSHEIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +Y + N + Q + A G LA C+QHELDHLNGIL++ HLS+LK DM KK K+ Sbjct: 121 KYKNLNNEEQTLKASGWLARCIQHELDHLNGILYVRHLSKLKYDMAMKKAQKV 173 >gi|312958120|ref|ZP_07772643.1| peptide deformylase [Pseudomonas fluorescens WH6] gi|311287551|gb|EFQ66109.1| peptide deformylase [Pseudomonas fluorescens WH6] Length = 212 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 104/156 (66%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ + L+D+M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 53 FPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVVMDLSED-- 110 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P V+INP+ +D+ YQEGCLS+P++ +V+R + ++ +D + + + A+G Sbjct: 111 RSEPRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPFEMIAEG 170 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 171 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 206 >gi|121610998|ref|YP_998805.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] gi|121555638|gb|ABM59787.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] Length = 170 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 103/160 (64%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L R++RP+ ++ I L D+ML MY GIGLAA Q+ V RL+V+D+ Sbjct: 6 PILRYPDPRLHRIARPVLAVDERIRALADDMLATMYQAQGIGLAATQVDVHERLLVVDVS 65 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D P+V INP+II S + + EGCLS+P DV+R + VR +D Q Q+I Sbjct: 66 DE--HDQPLVLINPEIIWTSAEKQTHNEGCLSVPGIYDDVERFDAVHVRALDTRGQPQVI 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA CLQHE+DHL G +F+ +LS LKR+ I +M K Sbjct: 124 EADGLLAMCLQHEMDHLQGKVFVQYLSPLKRNRIKTRMIK 163 >gi|121999101|ref|YP_001003888.1| peptide deformylase [Halorhodospira halophila SL1] gi|121590506|gb|ABM63086.1| peptide deformylase [Halorhodospira halophila SL1] Length = 169 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/163 (45%), Positives = 107/163 (65%), Gaps = 3/163 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++++PDP LR + P+ +++ + L+D+MLE MY GIGLAA Q+G R+ VID+ + Sbjct: 6 ILVYPDPRLRERAEPVAEVDDAVRRLVDDMLETMYEARGIGLAATQVGDRRRVAVIDVSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R P+V INP+I+ + + S +EGCLSIP Y DV R+ + R +D +AQ Sbjct: 66 E--RDEPLVLINPEILEATGEAS-GEEGCLSIPGYYDDVARATRVRYRALDRDAQPIEGE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LA CLQHE+DHL+G LFID+LS LKR + K+M K +L Sbjct: 123 AEGTLAVCLQHEIDHLDGRLFIDYLSELKRKRVRKRMEKRERL 165 >gi|302381971|ref|YP_003817794.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264] gi|302192599|gb|ADL00171.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264] Length = 194 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/176 (44%), Positives = 107/176 (60%), Gaps = 18/176 (10%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH------ 66 IL++VS+P+ ++ + L+D+ML+ MY GIGLAAVQIG L R+VV+DL D Sbjct: 17 ILKQVSKPVAVVDDAVRALMDDMLDTMYDAPGIGLAAVQIGELQRVVVMDLGDGPAPEAA 76 Query: 67 ------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 NP F+NP++I SD+ Y+EGCLSIP+Y V+R A + V Y Sbjct: 77 EAAAEDEEGSEETRVPNPRFFVNPEVIWASDETFCYEEGCLSIPEYFDQVERPARVRVAY 136 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +D +GL A C QHELDHLNG+LFIDHLSRL+RD K+ K ++LR+ Sbjct: 137 LDRTGARIEGEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRAMSKVKKTMRLRE 192 >gi|320154884|ref|YP_004187263.1| peptide deformylase [Vibrio vulnificus MO6-24/O] gi|319930196|gb|ADV85060.1| peptide deformylase [Vibrio vulnificus MO6-24/O] Length = 170 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 109/160 (68%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 66 S--RNEPMVLINPEILEKHGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGHEFTLE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|167031105|ref|YP_001666336.1| peptide deformylase [Pseudomonas putida GB-1] gi|166857593|gb|ABY96000.1| peptide deformylase [Pseudomonas putida GB-1] Length = 168 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV+DL + Sbjct: 9 FPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHLQVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP + + D YQEGCLS+P + +V R + V+ D + + + +G Sbjct: 67 RSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPFELECEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K Sbjct: 127 LLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEK 162 >gi|120613319|ref|YP_972997.1| peptide deformylase [Acidovorax citrulli AAC00-1] gi|120591783|gb|ABM35223.1| peptide deformylase [Acidovorax citrulli AAC00-1] Length = 169 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 108/160 (67%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P++ ++ + L+D+MLE MY GIGLAA Q+ V R++ ID+ Sbjct: 5 PILCYPDPRLHKVAQPVQVVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIITIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P+V INP+I+ S+D V +EGCLS+P V+RS + V+ +D Q ++I Sbjct: 65 ED--RDTPLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSTAVRVQALDAQGQSRVI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHE+DHL G +F+++LS LKR I KM K Sbjct: 123 EAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLK 162 >gi|332531650|ref|ZP_08407547.1| peptide deformylase [Hylemonella gracilis ATCC 19624] gi|332039013|gb|EGI75442.1| peptide deformylase [Hylemonella gracilis ATCC 19624] Length = 174 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 72/161 (44%), Positives = 107/161 (66%), Gaps = 2/161 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L V++P++ +++ I LI +M E MY +GIGLAA QI V RLVVID+ Sbjct: 5 PILTYPDPRLHTVAQPVQAVDARIKQLIADMFETMYDMNGIGLAATQINVHERLVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P VFINP+I+ S + + +EGCLS+P V+R + VR +D Q +++ Sbjct: 65 EG--RDQPQVFINPEIVWASPETKINEEGCLSVPGIYDGVERHERVHVRALDGEGQSRVV 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +GLL+ C+QHE+DHL G +F+++LS LKR+ I KM KL Sbjct: 123 ECEGLLSICIQHEMDHLMGKVFVEYLSPLKRNRIKTKMQKL 163 >gi|322513216|ref|ZP_08066342.1| peptide deformylase [Actinobacillus ureae ATCC 25976] gi|322120992|gb|EFX92833.1| peptide deformylase [Actinobacillus ureae ATCC 25976] Length = 170 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PD L +V P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ ID++ Sbjct: 6 VVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYENEGIGLAAPQVGVLKRVITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + N +V INP+I+ + + +EGCLSIP YRA V R + V+ ++ + I Sbjct: 65 -GDKTNQVVLINPEILESCGETGI-EEGCLSIPGYRALVPRKEKVKVKALNRKGEEVIYD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGL A C+QHE+DHLNG+LF+DH+S LKR I +KM KL Sbjct: 123 ADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKL 162 >gi|303245828|ref|ZP_07332110.1| peptide deformylase [Desulfovibrio fructosovorans JJ] gi|302492611|gb|EFL52479.1| peptide deformylase [Desulfovibrio fructosovorans JJ] Length = 177 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 75/161 (46%), Positives = 104/161 (64%), Gaps = 1/161 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P PIL S P+ + +I L D+M E MY+ G+GLAA Q+G RLVVIDL Sbjct: 8 YPHPILAAKSEPVPGVTPEIRQLADDMAETMYANQGVGLAAPQVGRSIRLVVIDLSGPDK 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ + +NP +IT ++ EGCLS+ DYRA+VKR+A +TV D + + ADG Sbjct: 68 REERINLVNP-VITKAEGEQEDDEGCLSVRDYRANVKRAATVTVCATDLDGNPFCLEADG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA CLQHE+DHL+G+LFIDH+SRLKR M K++ + + + Sbjct: 127 LLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWAKQK 167 >gi|26986813|ref|NP_742238.1| peptide deformylase [Pseudomonas putida KT2440] gi|148545341|ref|YP_001265443.1| peptide deformylase [Pseudomonas putida F1] gi|32363155|sp|Q88RR1|DEF1_PSEPK RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|24981409|gb|AAN65702.1|AE016196_13 polypeptide deformylase [Pseudomonas putida KT2440] gi|148509399|gb|ABQ76259.1| peptide deformylase [Pseudomonas putida F1] gi|313496440|gb|ADR57806.1| Def [Pseudomonas putida BIRD-1] Length = 168 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV+DL + Sbjct: 9 FPDPRLRTLAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP + + D YQEGCLS+P + +V R + V+ D + + + +G Sbjct: 67 RSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPFELECEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K Sbjct: 127 LLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEK 162 >gi|126668176|ref|ZP_01739137.1| peptide deformylase [Marinobacter sp. ELB17] gi|126627325|gb|EAZ97961.1| peptide deformylase [Marinobacter sp. ELB17] Length = 167 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 74/157 (47%), Positives = 100/157 (63%), Gaps = 2/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP LR +++P+ + +I LID+M E MY GIGLAA Q+ V ++VV+DL + Sbjct: 8 YPDPRLRTLAKPVTTVTDEIRTLIDDMFETMYDAAGIGLAASQVNVHQQIVVMDLSED-- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P VFINPKI D QEGCLS+P + +V+R ++ +D N + I A G Sbjct: 66 NSEPKVFINPKIGILDGDLEAMQEGCLSVPGFYEEVERIEHCLIKALDRNGEAFEIEARG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHLNG LF+D+LS LKR I KK+ KL Sbjct: 126 LLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKL 162 >gi|331007625|ref|ZP_08330767.1| Peptide deformylase [gamma proteobacterium IMCC1989] gi|330418565|gb|EGG93089.1| Peptide deformylase [gamma proteobacterium IMCC1989] Length = 166 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ FPD LR V++P+ ++ +ID+M E MY+ GIGLAA Q+ + +++V Sbjct: 1 MAQLPILEFPDARLRTVAKPVAEVTDATRRIIDDMFETMYAAPGIGLAATQVNIHQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP I ++ Y EGCLS+P + V+R I V +D N Sbjct: 61 MDLSED--KSEPQVFINPSITVQGEELDSYDEGCLSVPGFYESVERPKSIKVEAIDRNGS 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 II +GLLA C+QHE+DHLNG LF+D+LS +KR I KK+ K Sbjct: 119 PFIIEPEGLLAVCIQHEIDHLNGKLFVDYLSNMKRQRIRKKLEK 162 >gi|254361452|ref|ZP_04977592.1| peptide deformylase [Mannheimia haemolytica PHL213] gi|261491954|ref|ZP_05988531.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496243|ref|ZP_05992648.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092962|gb|EDN73988.1| peptide deformylase [Mannheimia haemolytica PHL213] gi|261308074|gb|EEY09372.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312421|gb|EEY13547.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 170 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PD L V P+E+++ + ID+M E MY +GIGLAA Q+GVL R++ ID++ Sbjct: 6 VVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEGIGLAAPQVGVLKRVITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + N +V INP+I+ S + + +EGCLSIP +RA V R + V+ ++ + II Sbjct: 65 -GDKTNQVVLINPEILESSGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRQGEEIIID 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD L A C+QHE+DHLNG+LF+DH+S LKR I +KM KL Sbjct: 123 ADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQKL 162 >gi|212632966|ref|YP_002309491.1| peptide deformylase [Shewanella piezotolerans WP3] gi|212554450|gb|ACJ26904.1| Polypeptide deformylase [Shewanella piezotolerans WP3] Length = 170 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 77/161 (47%), Positives = 103/161 (63%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++PI + N+ + ID+M E MY GIGLAA Q+ +L+V+DLQD Sbjct: 9 FPDERLRTVAKPITEFNAALQTQIDDMFETMYEEKGIGLAATQVDFHQQLIVMDLQDEID 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFIN +II S DF +EGCLS+P A V R+ F+T++ +D + + A+G Sbjct: 69 R--PKVFINLEIIAKSGDF-CNEEGCLSVPGIYAKVDRAEFVTIKALDRDGNEFTLEAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 L A CLQHELDHL G LF+D+LS LKR I +K+ K +L Sbjct: 126 LFAICLQHELDHLAGKLFVDYLSPLKRQRIKQKLEKAARLE 166 >gi|304412735|ref|ZP_07394338.1| peptide deformylase [Shewanella baltica OS183] gi|307305800|ref|ZP_07585546.1| peptide deformylase [Shewanella baltica BA175] gi|304348945|gb|EFM13360.1| peptide deformylase [Shewanella baltica OS183] gi|306911293|gb|EFN41719.1| peptide deformylase [Shewanella baltica BA175] Length = 170 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 77/168 (45%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR + PI + N+++ ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R VFINP+II S DF +EGCLS+P A V R+ F+TV+ +D + Sbjct: 61 MDLQDEVERHK--VFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|260775015|ref|ZP_05883915.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] gi|260609105|gb|EEX35264.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] Length = 173 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+EK+ +I +D+M+E MY +GIGLAA Q+ R+VVID+ + Sbjct: 6 VLTFPDERLRTVAKPVEKVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 66 T--RDQPMVLINPEILDKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALDRDGKEYTFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|90581176|ref|ZP_01236975.1| peptide deformylase [Vibrio angustum S14] gi|90437697|gb|EAS62889.1| peptide deformylase [Vibrio angustum S14] Length = 169 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E I +I +ID+MLE MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVVIDVSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV +NP+I + + +EGCLS+P R V R+A ++V +D + + Sbjct: 66 E--RNQPMVLVNPEITEERGEDGI-EEGCLSVPTARGFVPRAAGVSVTALDRDGKEYSFK 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLLA C+QHELDHL G LF+D+LS LKR I +K+ K+ Sbjct: 123 ADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKI 162 >gi|162147911|ref|YP_001602372.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|209542528|ref|YP_002274757.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|161786488|emb|CAP56070.1| Peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|209530205|gb|ACI50142.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] Length = 179 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 106/161 (65%), Gaps = 2/161 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+++ P ILR+ +RP+ ++ + + + M MY GIGLAA Q+G+ R ++DL Sbjct: 14 PILVAPQAILRQKARPVRPEDAAGVRDALPRMFAAMYQAPGIGLAAPQVGMGLRFAIVDL 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + R+ P++ INP +I SD + +EGCLS+P+ A+V R + VRY + + Sbjct: 74 GEEGERQ-PLILINPDVIAESDSLASREEGCLSLPNQYAEVIRPDRVRVRYRTLDGTEEE 132 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K Sbjct: 133 LEADGLLATCIQHEIDHLEGILFVDHLSTLKRNMIMRRLAK 173 >gi|145300986|ref|YP_001143827.1| peptide deformylase [Aeromonas salmonicida subsp. salmonicida A449] gi|158514058|sp|A4ST57|DEF_AERS4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|142853758|gb|ABO92079.1| polypeptide deformylase [Aeromonas salmonicida subsp. salmonicida A449] Length = 170 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 111/159 (69%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V+ P+E ++ +++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 FPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R++P+V INP+I+ + + +EGCLS+PD+RA V R+ ++ VR +D N Q + AD Sbjct: 67 REDPLVLINPEILEQAGSTGI-EEGCLSVPDHRALVPRAEWVKVRALDRNGQPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ + Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAR 164 >gi|260771088|ref|ZP_05880016.1| peptide deformylase [Vibrio furnissii CIP 102972] gi|260613977|gb|EEX39168.1| peptide deformylase [Vibrio furnissii CIP 102972] gi|315178587|gb|ADT85501.1| peptide deformylase [Vibrio furnissii NCTC 11218] Length = 170 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 110/165 (66%), Gaps = 3/165 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ V R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP I+ + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 66 T--RDEPMVLINPVILEKRGEDGI-EEGCLSVPGARALVARAAEVTVKALNRDGEEYTFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + D Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFND 167 >gi|37681409|ref|NP_936018.1| peptide deformylase [Vibrio vulnificus YJ016] gi|39930925|sp|Q7MGK6|DEF2_VIBVY RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|37200161|dbj|BAC95989.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016] Length = 202 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 109/160 (68%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ + R+VVID+ + Sbjct: 38 VLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVVIDISE 97 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 98 S--RNEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGHEFTLE 154 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 155 ADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 194 >gi|24371632|ref|NP_715674.1| polypeptide deformylase [Shewanella oneidensis MR-1] gi|32363158|sp|Q8EKQ8|DEF1_SHEON RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|24345388|gb|AAN53119.1|AE015454_13 polypeptide deformylase [Shewanella oneidensis MR-1] Length = 168 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 75/159 (47%), Positives = 101/159 (63%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR + PI + N+++ ID+M E MY GIGLAA Q+ +L+V+DLQD Sbjct: 9 FPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+II S DF +EGCLS+P A V R+ F+TV+ +D + + AD Sbjct: 69 R--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEFTVEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A C+QHE+DHL G LF+D+LS LKR I +K+ K + Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAK 164 >gi|317050727|ref|YP_004111843.1| peptide deformylase [Desulfurispirillum indicum S5] gi|316945811|gb|ADU65287.1| peptide deformylase [Desulfurispirillum indicum S5] Length = 171 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 107/164 (65%), Gaps = 2/164 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-L 63 P++ +PDP+L+++S+P+ + +S + L+ +M + MY+ +G+GLAA QIG+L R+ V+D Sbjct: 4 PILTYPDPLLKKISQPVTQFDSALQQLVSDMFDTMYNANGVGLAAPQIGILRRICVLDPA 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP+I++ + + ++EGCLS+P Y ++KR I V++ D Q Q Sbjct: 64 SGKEEEAQPLVLINPQILS-GEGLTTFEEGCLSVPGYYGEIKRYERIQVQFNDLQGQEQT 122 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DG A QHE+DHLNG LFI+HL +RD+I +K+ K ++ Sbjct: 123 AILDGFTAIIAQHEMDHLNGKLFIEHLGSSERDLIRRKIRKAMK 166 >gi|260914694|ref|ZP_05921160.1| peptide deformylase [Pasteurella dagmatis ATCC 43325] gi|260631293|gb|EEX49478.1| peptide deformylase [Pasteurella dagmatis ATCC 43325] Length = 170 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 71/165 (43%), Positives = 111/165 (67%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++++PD L+ V++P+E++N I ++D+M E MY +GIGLAA Q+ + R++ Sbjct: 1 MAKLNVLVYPDDRLKIVAKPVEEVNDKIREIVDDMFETMYHEEGIGLAATQVDIHQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N V INP+II + + +EGCLS+P +R V R +TV+ +D N + Sbjct: 61 IDVE--GTKENQYVLINPEIIESCGETGI-EEGCLSLPGFRGFVPRKEKVTVKALDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + ADGLLA C+QHE+DHLNGI+F D+LS LKR + +K+ KL Sbjct: 118 EYTLNADGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLVKL 162 >gi|153834309|ref|ZP_01986976.1| peptide deformylase [Vibrio harveyi HY01] gi|148869317|gb|EDL68331.1| peptide deformylase [Vibrio harveyi HY01] Length = 172 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 110/160 (68%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 66 T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEYTFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I +K++K+ Sbjct: 123 ADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQEKLAKI 162 >gi|262273080|ref|ZP_06050897.1| peptide deformylase [Grimontia hollisae CIP 101886] gi|262222836|gb|EEY74144.1| peptide deformylase [Grimontia hollisae CIP 101886] Length = 170 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E + +I ++D+MLE MY DGIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVESVTPEIQKIVDDMLETMYQEDGIGLAATQVDIHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R++ +TV+ +D + Sbjct: 66 T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRASEVTVKALDRDGNEYQFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LK+ I +K+ K+ Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKQQRIKQKLEKI 162 >gi|307543965|ref|YP_003896444.1| peptide deformylase [Halomonas elongata DSM 2581] gi|307215989|emb|CBV41259.1| peptide deformylase [Halomonas elongata DSM 2581] Length = 170 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K P++ FPD LR + +E ++ ++ L+D+MLE MY GIGLAA Q+ V R++V Sbjct: 1 MAKLPILEFPDERLRTEAAAVETVDDEVRQLVDDMLETMYDARGIGLAATQVDVHRRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + P+V INP+ D+ QEGCLSIP+Y A+V R+ + ++ ++ + Sbjct: 61 MDVSDD--QSAPLVLINPEYTPIGDEREPMQEGCLSIPEYYAEVPRALKVHLKALNRQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A+GLLA C+QHE DHL G+LF+D+LS LKRD + KKM K Sbjct: 119 PYELEAEGLLAHCIQHECDHLRGVLFVDYLSPLKRDRVMKKMQK 162 >gi|90413779|ref|ZP_01221767.1| peptide deformylase [Photobacterium profundum 3TCK] gi|90325248|gb|EAS41745.1| peptide deformylase [Photobacterium profundum 3TCK] Length = 169 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 109/165 (66%), Gaps = 3/165 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR +++P+E I +I N++D+MLE MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDERLRTIAKPVEAITPEIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I + + +EGCLS+P RA V R+A ++V+ +D + Sbjct: 66 E--RDQPMVLINPEITDKRGEDGI-EEGCLSVPGSRALVPRAAEVSVKALDRDGNPFSFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + D Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFND 167 >gi|253991650|ref|YP_003043006.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783100|emb|CAQ86265.1| peptide deformylase [Photorhabdus asymbiotica] Length = 170 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/161 (45%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR ++ P+EK+++ I +++D+M E MY+ DGIGLAA Q+ + R++VID+ D Sbjct: 9 YPDERLRTIATPVEKVDAKIQSIVDDMFETMYAEDGIGLAATQVDIHQRIIVIDVSDT-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ + + +EGCLSIP+ RA V R+ + +R +D N Q + ADG Sbjct: 67 RNERLVLINPELLEKNGKTGI-EEGCLSIPEQRALVSRAEKVKIRALDYNGQSFELQADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + R Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLYKQR 166 >gi|296125655|ref|YP_003632907.1| peptide deformylase [Brachyspira murdochii DSM 12563] gi|296017471|gb|ADG70708.1| peptide deformylase [Brachyspira murdochii DSM 12563] Length = 189 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/162 (46%), Positives = 103/162 (63%), Gaps = 8/162 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + LVI+ D L++VS IEKI+ +I+ LID+M E MY G+GLAAVQIG+L RL+VI + Sbjct: 3 RELVIYGDERLQQVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGILKRLIVISV 62 Query: 64 QDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P + INP+II ++ + +EGCLS P+ R DV R I V+Y+D Sbjct: 63 PDFDDETKPDFKLALINPEIIWHGEEKEILEEGCLSFPEIRDDVARYKEIKVKYLDKEGN 122 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS-----RLKRDM 157 QI+ A+G +A LQHE+DH NGI FID L RLKR++ Sbjct: 123 EQILEAEGYIAKVLQHEIDHTNGISFIDRLESYQKRRLKREL 164 >gi|148651859|ref|YP_001278952.1| peptide deformylase [Psychrobacter sp. PRwf-1] gi|172048436|sp|A5WBG1|DEF_PSYWF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148570943|gb|ABQ93002.1| peptide deformylase [Psychrobacter sp. PRwf-1] Length = 176 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 70/166 (42%), Positives = 108/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP LR ++ PI+ ++++I LI +M+E MY GIGLAA Q+ +L+V+DL Sbjct: 5 PILSYPDPRLRTIAEPIKTVDAEIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ +P VFINPK+ +D Y+EGCLS+PD V R + + +D + Sbjct: 65 EN--NDSPRVFINPKVTPLVEDKKPYEEGCLSVPDVYDSVDRPVKVKIEALDADGNAFEE 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+GLLA C+QHE+DHLNG+LF+D+LSRLK+ K+ K ++ R+ Sbjct: 123 IAEGLLAVCIQHEMDHLNGVLFVDYLSRLKQTRARDKVKKYLKTRE 168 >gi|77166461|ref|YP_344986.1| peptide deformylase [Nitrosococcus oceani ATCC 19707] gi|254435308|ref|ZP_05048815.1| peptide deformylase [Nitrosococcus oceani AFC27] gi|123593232|sp|Q3J6U0|DEF_NITOC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|76884775|gb|ABA59456.1| peptide deformylase [Nitrosococcus oceani ATCC 19707] gi|207088419|gb|EDZ65691.1| peptide deformylase [Nitrosococcus oceani AFC27] Length = 167 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 101/156 (64%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP LRR ++P+ ++ I L D+MLE MY GIGLAAVQ+ V ++VVID+ + Sbjct: 9 YPDPRLRRKAQPVAAVDKSIKKLADDMLETMYQAPGIGLAAVQVNVPKQVVVIDISED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + +P+V INP+I+ + +EGCLS+P+ V R+A ITV Y+D Q Q + Sbjct: 67 KSSPLVLINPEIVARQGK-AESEEGCLSVPEIFEPVTRAAEITVHYLDREGQKQELQTQE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLATC+QHELDHL G LFID+ S LKR I KK K Sbjct: 126 LLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEK 161 >gi|221069823|ref|ZP_03545928.1| peptide deformylase [Comamonas testosteroni KF-1] gi|220714846|gb|EED70214.1| peptide deformylase [Comamonas testosteroni KF-1] Length = 170 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P+ +++ I L+ +MLE MY GIGLAA QI V R++VID+ Sbjct: 5 PILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R PM INP+I+ SD+ + +EGCLS+P V+RS + V+ +D N + I Sbjct: 65 EE--RNEPMALINPEILWASDETQLGEEGCLSVPGIYDGVERSIAVKVKALDENGNSREI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K Sbjct: 123 DAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVK 162 >gi|33152876|ref|NP_874229.1| peptide deformylase [Haemophilus ducreyi 35000HP] gi|39930849|sp|Q7VKK9|DEF_HAEDU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33149101|gb|AAP96618.1| peptide deformylase [Haemophilus ducreyi 35000HP] Length = 171 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PD L +V P+ +++ ++ ID+M + MY GIGLAA Q+GVL R++ ID++ Sbjct: 6 VVLYPDDRLTKVCEPVTQVDDELNQFIDDMFDTMYQEGGIGLAASQVGVLKRVITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + N +V INP+I+ + + +EGCLSIP YRA V R ITV+ ++ + I + Sbjct: 65 -GDKTNQVVLINPEILESCGETGI-EEGCLSIPGYRALVPRKEKITVKALNRQGEEVIYH 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD L A C+QHE+DHLNGI+F+DH+S LKR I KM KL Sbjct: 123 ADDLFAICIQHEIDHLNGIVFVDHISNLKRQRIKDKMQKL 162 >gi|284006131|emb|CBA71372.1| polypeptide deformylase [Arsenophonus nasoniae] Length = 171 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 68/161 (42%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+++ P++K++++I ++++M E MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 YPDERLRKIAEPVKKVDAEIQRIVNDMFETMYEEEGIGLAATQVNIHQRIIVIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP I+ S + + +EGCLS+P+ RA V R+ ++ ++ +D N + + D Sbjct: 67 RNERLVLINPVILETSGETGI-EEGCLSVPEQRAFVPRAKWVKIKALDVNGKEFELETDD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHLNG LFID+LS LKR I +K+ KL +L+ Sbjct: 126 LLAICIQHEIDHLNGKLFIDYLSALKRQRIRQKIEKLERLK 166 >gi|85711005|ref|ZP_01042066.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145] gi|85695409|gb|EAQ33346.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145] Length = 173 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/170 (44%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PD LR V++PIE+++ + ID+M E MY + G+GLAA Q+ V RL V Sbjct: 1 MTKLTVLKYPDERLRTVAQPIEQVDDALRATIDDMFETMYESQGVGLAATQVDVHQRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ + P+VFINP+I T S+ +EGCLS P+ A V+R+ ITV+ +D N + Sbjct: 61 ADCSEN--QNEPLVFINPEI-TRSEGHFTNEEGCLSFPNVFAKVERAESITVQALDKNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K +L++ Sbjct: 118 RFSMDAEGLLAICVQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLQE 167 >gi|163751680|ref|ZP_02158899.1| polypeptide deformylase [Shewanella benthica KT99] gi|161328419|gb|EDP99575.1| polypeptide deformylase [Shewanella benthica KT99] Length = 170 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 72/161 (44%), Positives = 105/161 (65%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ + N+ + I+NM E MY G+GLAA Q+ +L+++DLQD Sbjct: 9 FPDERLRTLAKPVTEFNTGLQTQINNMFETMYEDKGVGLAATQVDYHRQLIIMDLQDEEE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFIN +I+ S FS +EGCLS+P + AD++R+ +T++ +D + + ADG Sbjct: 69 R--PKVFINLEIVASSGHFS-NEEGCLSVPGFYADIERAEHVTIKALDRDGIEFTLDADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 L A CLQHELDHL G LF+D+LS LKR I +K+ K +L Sbjct: 126 LFAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARLE 166 >gi|225619787|ref|YP_002721044.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1] gi|254767571|sp|C0QZQ2|DEF_BRAHW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225214606|gb|ACN83340.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1] Length = 187 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 105/165 (63%), Gaps = 3/165 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + LVI+ D L++VS IEKI+ +I+ LID+M E MY G+GLAAVQIGVL RLVVI + Sbjct: 3 RELVIYGDERLQKVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGVLKRLVVISV 62 Query: 64 QDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P + INP+II +D+ +EGCLS P+ R DV R I V+Y+D Sbjct: 63 PDFDDEEKPDFKLALINPEIIWHNDETESLEEGCLSFPEIRDDVARYTQIKVKYLDREGN 122 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 QI+ A+ +A LQHE+DH NGI FID L ++ + +++ +L Sbjct: 123 EQILDAENYIAKVLQHEIDHTNGISFIDRLESYQKRRLKRELKEL 167 >gi|156972726|ref|YP_001443633.1| peptide deformylase [Vibrio harveyi ATCC BAA-1116] gi|166198526|sp|A7N121|DEF_VIBHB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|156524320|gb|ABU69406.1| hypothetical protein VIBHAR_00391 [Vibrio harveyi ATCC BAA-1116] Length = 172 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 109/160 (68%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 66 T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEYTFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|89902619|ref|YP_525090.1| peptide deformylase [Rhodoferax ferrireducens T118] gi|89347356|gb|ABD71559.1| peptide deformylase [Rhodoferax ferrireducens T118] Length = 169 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 106/160 (66%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L V++P+ ++ + LI +MLE MY GIGLAA QI V RL+V+D+ Sbjct: 5 PILCYPDPKLHTVAKPVSTVDVRVQTLIVDMLETMYEAKGIGLAATQINVHERLIVVDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P+V INP+++ S + + +EGCLS+P V+R +TV +D Q ++I Sbjct: 65 EE--RDAPLVLINPQLVWSSAETHLNEEGCLSVPGIYDGVERFDAVTVTALDGQGQSRLI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHE+DHL G +F+++LS LKR+ I KKM K Sbjct: 123 EAEGLLAVCIQHEMDHLQGKVFVEYLSPLKRNRIKKKMLK 162 >gi|58040267|ref|YP_192231.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans 621H] gi|58002681|gb|AAW61575.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans 621H] Length = 184 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/166 (43%), Positives = 108/166 (65%), Gaps = 1/166 (0%) Query: 5 PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++I P P+LR V+R + + + I + M MY GIGLAA Q+G+ R ++D+ Sbjct: 17 PILIAPQPVLREVTRDVRPEDIAFIREQLPGMFSAMYKAPGIGLAAPQVGLGMRFALVDV 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + PM+ INP+II+ SD + +EGCLS+P+ A+V R I VRY + + Sbjct: 77 AEEDAPREPMLLINPEIISDSDQLAAREEGCLSLPNQYAEVVRPESIRVRYRNLAGETIE 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A GLLATC+QHE+DHL+GILF+DHLS LKR+MI ++++K +LR Sbjct: 137 RDASGLLATCIQHEMDHLDGILFVDHLSTLKRNMIMRRLAKEQKLR 182 >gi|46143358|ref|ZP_00204456.1| COG0242: N-formylmethionyl-tRNA deformylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|190151040|ref|YP_001969565.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249953|ref|ZP_07336155.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253125|ref|ZP_07339274.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246635|ref|ZP_07528706.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248763|ref|ZP_07530776.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253382|ref|ZP_07535253.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255620|ref|ZP_07537425.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257796|ref|ZP_07539553.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260071|ref|ZP_07541783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262201|ref|ZP_07543851.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307264402|ref|ZP_07545988.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238692356|sp|B3GYT7|DEF_ACTP7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189916171|gb|ACE62423.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647807|gb|EFL78014.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651016|gb|EFL81170.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852507|gb|EFM84741.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854690|gb|EFM86880.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859061|gb|EFM91103.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861469|gb|EFM93458.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863702|gb|EFM95628.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865907|gb|EFM97783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868075|gb|EFM99901.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870218|gb|EFN01976.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 170 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PD L +V P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ ID++ Sbjct: 6 VVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + N +V INP+I+ + + +EGCLSIP +RA V R + V+ ++ + I Sbjct: 65 -GDKTNQVVLINPEILESCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGEEVIYE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGL A C+QHE+DHLNG+LF+DH+S LKR I +KM KL Sbjct: 123 ADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKL 162 >gi|262089743|gb|ACY24837.1| Def peptide deformylase [uncultured organism] Length = 169 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/150 (46%), Positives = 97/150 (64%), Gaps = 2/150 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ ++N + LID+M E MY G+GLAA QI V R+VVID+ + Sbjct: 9 FPDPRLRTIAKPVTEVNDRVRKLIDDMFETMYDAPGVGLAASQINVHERIVVIDVSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + PMVFINP++ D Y EGCLS+P + V+R I+V +D + + I +G Sbjct: 67 KSQPMVFINPEVTVLDSDLHEYDEGCLSVPGFYETVERPEHISVTALDRDGKSFTIKPEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMI 158 LLA C+QHELDHLNG LF+D++S KR I Sbjct: 127 LLAVCIQHELDHLNGKLFVDYISSFKRTRI 156 >gi|332139430|ref|YP_004425168.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype'] gi|238693290|sp|B4S291|DEF_ALTMD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|327549452|gb|AEA96170.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype'] Length = 169 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++P+E++N +I L+ +M E M +GIGLAA Q+ ++VV+D+ + Sbjct: 9 FPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVVMDVSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+I T D ++ +EGCLS+P A V+R+ ITV+ +D N + + A+G Sbjct: 67 QNEPRVFINPEI-TRKDGSTISEEGCLSVPGNYAKVERAEAITVKALDQNGEAFELDAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 126 LLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165 >gi|237749120|ref|ZP_04579600.1| peptide deformylase [Oxalobacter formigenes OXCC13] gi|229380482|gb|EEO30573.1| peptide deformylase [Oxalobacter formigenes OXCC13] Length = 208 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/165 (43%), Positives = 113/165 (68%), Gaps = 4/165 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ +PDP L + SRP+ + +LI +M + MY G+GLAA QI V +L+V Sbjct: 30 MARLPILRYPDPRLLKPSRPVTDFGDSLKSLIADMAQTMYEAPGVGLAAPQINVHKQLIV 89 Query: 61 IDLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ID+ + +KN + VFINP+I+ S++ ++++EGCLS+P +++R A +TVR +D N Sbjct: 90 IDVSE---QKNELRVFINPQIVKASEEKAIFEEGCLSLPGIYDEIERPAKVTVRALDANG 146 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K Sbjct: 147 KEFELEAEGLLAVCVQHEIDHLKGSIFVDYLSPMKRNRIKKKLLK 191 >gi|91226303|ref|ZP_01261143.1| peptide deformylase [Vibrio alginolyticus 12G01] gi|262392831|ref|YP_003284685.1| peptide deformylase [Vibrio sp. Ex25] gi|91189314|gb|EAS75593.1| peptide deformylase [Vibrio alginolyticus 12G01] gi|262336425|gb|ACY50220.1| peptide deformylase [Vibrio sp. Ex25] Length = 172 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 108/160 (67%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E + +I ++D+M+E MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 66 T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEFTFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|307251005|ref|ZP_07532930.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856945|gb|EFM89076.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 170 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PD L +V P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ ID++ Sbjct: 6 VVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + N +V INP+I+ + + +EGCLSIP +RA V R + V+ ++ + I Sbjct: 65 -GDKTNQVVLINPEILGSCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGEEVIYE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGL A C+QHE+DHLNG+LF+DH+S LKR I +KM KL Sbjct: 123 ADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKL 162 >gi|300718672|ref|YP_003743475.1| peptide deformylase [Erwinia billingiae Eb661] gi|299064508|emb|CAX61628.1| Peptide deformylase [Erwinia billingiae Eb661] Length = 174 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/157 (45%), Positives = 110/157 (70%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 FPDERLRIVAKPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + ADG Sbjct: 67 REERLVLINPEMLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGNSYELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHL G LFID+LS +KR I +K+ KL Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKL 162 >gi|319796457|ref|YP_004158097.1| peptide deformylase [Variovorax paradoxus EPS] gi|315598920|gb|ADU39986.1| peptide deformylase [Variovorax paradoxus EPS] Length = 172 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/164 (45%), Positives = 109/164 (66%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ +PD L V++P++ +++ I L+ +MLE MY +GIGLAA QI V RLVV Sbjct: 1 MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDAEGIGLAATQIDVHERLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I SD+ + +EGCLS+P V RS + V+ +D N + Sbjct: 61 IDVSEE--RNKPIVLINPEITWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I ADGLLA C+QHELDHL G +F+++LS LKR+ I K+ K Sbjct: 119 MRTIEADGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLK 162 >gi|225698067|pdb|3FWX|A Chain A, The Crystal Structure Of The Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961 gi|225698068|pdb|3FWX|B Chain B, The Crystal Structure Of The Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961 Length = 169 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 108/160 (67%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+ LE Y+ +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEQVTPEIQQIVDDXLETXYAEEGIGLAATQVDIHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R P V INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 66 T--RDQPXVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 162 >gi|332976314|gb|EGK13171.1| peptide deformylase [Psychrobacter sp. 1501(2011)] Length = 176 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/166 (42%), Positives = 109/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP LR ++ P++ +++DI LI +M+E MY GIGLAA Q+ +L+V+DL Sbjct: 5 PILSYPDPRLRTIAEPVKTVDADIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ +P VFINPKI +D Y+EGCLS+PD V+R + + +D + + Sbjct: 65 EN--NDSPRVFINPKITPLVEDKKPYEEGCLSVPDVYDSVERPVKVKIEALDGDGKPFEE 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+GLLA C+QHE+DHLNG+LF+D+LS LK+ K+ K ++ R+ Sbjct: 123 IAEGLLAVCIQHEMDHLNGVLFVDYLSSLKQTRARDKVRKYLKTRE 168 >gi|239993910|ref|ZP_04714434.1| peptide deformylase [Alteromonas macleodii ATCC 27126] Length = 169 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++P+E++N +I L+ +M E M +GIGLAA Q+ ++VV+D+ + Sbjct: 9 FPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVVMDVSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+II D ++ +EGCLS+P A V+R+ ITV+ +D N + + A+G Sbjct: 67 QNEPRVFINPEIIR-KDGSTISEEGCLSVPGNYAKVERAESITVKALDQNGESFELDAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 126 LLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165 >gi|325577099|ref|ZP_08147583.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392] gi|325160681|gb|EGC72802.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392] Length = 175 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ V P+ ++N DI ++D+M + MY +GIGLAA Q+ +L R++ ID++ Sbjct: 12 VLIYPDDHLKIVCEPVAEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDIE- 70 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N +V INP+I+ + + +EGCLSIP +RA V R +TV+ +D + + + Sbjct: 71 -GDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLD 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K Sbjct: 129 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 167 >gi|329849466|ref|ZP_08264312.1| peptide deformylase [Asticcacaulis biprosthecum C19] gi|328841377|gb|EGF90947.1| peptide deformylase [Asticcacaulis biprosthecum C19] Length = 177 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/175 (44%), Positives = 115/175 (65%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ P P+L++VS+P++K++ D+ L+D+MLE MY GIGLAAVQIG R++V Sbjct: 1 MAIREILTVPHPVLKQVSKPVDKVDDDLRRLMDDMLETMYDAPGIGLAAVQIGEPIRVIV 60 Query: 61 IDLQDHAHR--------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +DLQ+ K P F+NP+II S++ + Y+EGCLS+P+ +V R + + + Sbjct: 61 MDLQEKPEGAEPDAEGVKKPRYFVNPEIIWRSEEVAPYEEGCLSVPEIYDEVLRPSKVKL 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +Y+D N ADGL A C+QHE+DHL G LFIDHLS+LKRD K+ KL + Sbjct: 121 KYLDYNGNAVEEDADGLFAVCIQHEMDHLEGTLFIDHLSKLKRDRAITKVKKLTR 175 >gi|188492250|ref|ZP_02999520.1| peptide deformylase [Escherichia coli 53638] gi|291284645|ref|YP_003501463.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615] gi|188487449|gb|EDU62552.1| peptide deformylase [Escherichia coli 53638] gi|209757364|gb|ACI76994.1| peptide deformylase [Escherichia coli] gi|290764518|gb|ADD58479.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615] gi|320661377|gb|EFX28792.1| peptide deformylase [Escherichia coli O55:H7 str. USDA 5905] Length = 169 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/162 (43%), Positives = 115/162 (70%), Gaps = 3/162 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+D Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167 >gi|42524171|ref|NP_969551.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100] gi|39576379|emb|CAE80544.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100] Length = 201 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 106/175 (60%), Gaps = 17/175 (9%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 ++ FPDP LR VS+P++ +I L ++M+E MY +GIGLAA Q+G L R+VVID Sbjct: 5 ILTFPDPKLREVSQPVKTFGPEIAKLAEDMVETMYHANGIGLAAPQVGELVRMVVIDTRP 64 Query: 64 QDHAHR--------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 +D R K P++ INP+I+ + + + EGCLSIP Y V+R + Sbjct: 65 KDEKGRRYKYEEMTELEAAVKQPLILINPEIVK-GEGKTTFDEGCLSIPGYYETVERYNY 123 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I ++ D N + I+ DGLLA C+QHE+DHL G LFIDHLS +K + I ++ K Sbjct: 124 IEMKAFDVNGKEYIVKTDGLLAICMQHEMDHLEGTLFIDHLSFVKGNKIKNQIKK 178 >gi|269962644|ref|ZP_06176989.1| peptide deformylase [Vibrio harveyi 1DA3] gi|269832567|gb|EEZ86681.1| peptide deformylase [Vibrio harveyi 1DA3] Length = 193 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 109/160 (68%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ V R+VVID+ + Sbjct: 27 VLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHKRIVVIDISE 86 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 87 T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEYTFD 143 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 144 ADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKI 183 >gi|300115536|ref|YP_003762111.1| peptide deformylase [Nitrosococcus watsonii C-113] gi|299541473|gb|ADJ29790.1| peptide deformylase [Nitrosococcus watsonii C-113] Length = 167 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 103/160 (64%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP LRR ++P+ ++ I L D+MLE MY GIGLAA+Q+ V ++VVID+ + Sbjct: 9 YPDPRLRRKAQPVAVVDKSIRKLADDMLETMYQAPGIGLAAIQVNVPKQVVVIDISED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + +P+V INP+II + +EGCLS+P+ V R+A ITV Y+D Q Q + Sbjct: 67 KSSPLVLINPEIIARQGK-AESEEGCLSVPEIFEPVTRAAEITVHYLDREGQKQELQTQE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLATC+QHELDHL G LFID+ S LKR I KK K +L Sbjct: 126 LLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165 >gi|329295654|ref|ZP_08252990.1| peptide deformylase [Plautia stali symbiont] Length = 170 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 109/159 (68%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR+++ P+ +N+D+ ++D+M E MY+ +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDDRLRKIAAPVAAVNADVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ +V INP+++ S + + +EGCLSIP+ RA V R+ + VR +D + + DG Sbjct: 67 REERLVLINPELLEKSGETGM-EEGCLSIPEQRAFVPRAERVKVRALDRDGNSFELETDG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHELDHL+G LFID+LS LKR I +K+ KL + Sbjct: 126 LLAICIQHELDHLDGKLFIDYLSPLKRQRIKQKLEKLAR 164 >gi|326567834|gb|EGE17938.1| peptide deformylase [Moraxella catarrhalis 12P80B1] gi|326568164|gb|EGE18246.1| peptide deformylase [Moraxella catarrhalis BC8] gi|326573749|gb|EGE23707.1| peptide deformylase [Moraxella catarrhalis O35E] Length = 184 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 69/166 (41%), Positives = 106/166 (63%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP LR +++P+ + + LI++M E MY GIGLAA Q+ +L+V+DL Sbjct: 5 PILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIVMDLA 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +P VFINPK+ D+ S YQEGCLS+P+ ++R + + + +D + Q I Sbjct: 65 RKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQPFEI 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+GLLA C+QHE+DHLNG LF+D+LS LK+ K+ K ++ R+ Sbjct: 125 EAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170 >gi|296114064|ref|YP_003628002.1| peptide deformylase [Moraxella catarrhalis RH4] gi|295921758|gb|ADG62109.1| peptide deformylase [Moraxella catarrhalis RH4] gi|326559449|gb|EGE09872.1| peptide deformylase [Moraxella catarrhalis 7169] gi|326561289|gb|EGE11648.1| peptide deformylase [Moraxella catarrhalis 46P47B1] gi|326565177|gb|EGE15368.1| peptide deformylase [Moraxella catarrhalis 103P14B1] gi|326566131|gb|EGE16288.1| peptide deformylase [Moraxella catarrhalis BC1] gi|326572198|gb|EGE22194.1| peptide deformylase [Moraxella catarrhalis BC7] gi|326572807|gb|EGE22792.1| peptide deformylase [Moraxella catarrhalis CO72] gi|326574626|gb|EGE24562.1| peptide deformylase [Moraxella catarrhalis 101P30B1] Length = 184 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 69/166 (41%), Positives = 106/166 (63%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP LR +++P+ + + LI++M E MY GIGLAA Q+ +L+V+DL Sbjct: 5 PILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIVMDLA 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +P VFINPK+ D+ S YQEGCLS+P+ ++R + + + +D + Q I Sbjct: 65 RKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQPFEI 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+GLLA C+QHE+DHLNG LF+D+LS LK+ K+ K ++ R+ Sbjct: 125 EAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170 >gi|285019618|ref|YP_003377329.1| peptide deformylase [Xanthomonas albilineans GPE PC73] gi|283474836|emb|CBA17335.1| putative peptide deformylase protein [Xanthomonas albilineans] Length = 170 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 76/159 (47%), Positives = 104/159 (65%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 FPD LR + P+ E + L+D+M + MY+ GIGLAA Q+ V R +VID+ + Sbjct: 9 FPDSRLRTKAEPVDPAEVASVAFQRLLDDMFDTMYAAPGIGLAASQVDVHKRFMVIDVSE 68 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P VF+NP+I+ + V+QEGCLS+P ADV RS ITVRY+D Q Q + Sbjct: 69 E--KNAPHVFVNPQIVQREGE-QVHQEGCLSVPGIYADVTRSESITVRYLDRQGQSQELT 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK+ K Sbjct: 126 TDGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLVK 164 >gi|114327357|ref|YP_744513.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] gi|114315531|gb|ABI61591.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] Length = 205 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 74/161 (45%), Positives = 107/161 (66%), Gaps = 2/161 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++I P L+ +RP+ ++ I +L+ M MY GIGLAA QI L RL V+D+ Sbjct: 38 PILIAPHKTLKTRARPVTAGDASLIRDLVPRMFATMYKAPGIGLAAPQIDSLLRLAVVDV 97 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +K P+V INP II S++ + +EGCLS+P+ ADV R A I +RY D + + Sbjct: 98 SPD-DQKAPLVLINPDIIARSEEMATREEGCLSLPNQYADVTRPARIKLRYEDLDGSRRE 156 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + AD LLATC+QHE+DHL+GILF+DHLS LKR+M+ ++++K Sbjct: 157 MEADDLLATCIQHEIDHLDGILFVDHLSTLKRNMLMRRLAK 197 >gi|323493839|ref|ZP_08098957.1| peptide deformylase [Vibrio brasiliensis LMG 20546] gi|323311973|gb|EGA65119.1| peptide deformylase [Vibrio brasiliensis LMG 20546] Length = 172 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VVID+ D Sbjct: 6 VLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDVSD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 66 T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGEEFTFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|16762876|ref|NP_458493.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144363|ref|NP_807705.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161458|ref|ZP_03347168.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418738|ref|ZP_03351804.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213584235|ref|ZP_03366061.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650879|ref|ZP_03380932.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824191|ref|ZP_06543786.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|23396544|sp|Q8Z1W9|DEF_SALTI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|25303718|pir||AB1010 formylmethionine deformylase (EC 3.5.1.31) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505183|emb|CAD09179.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140001|gb|AAO71565.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 169 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGNPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|239818071|ref|YP_002946981.1| peptide deformylase [Variovorax paradoxus S110] gi|239804648|gb|ACS21715.1| peptide deformylase [Variovorax paradoxus S110] Length = 173 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 74/164 (45%), Positives = 109/164 (66%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ +PD L V++P++ +++ I L+ +MLE MY GIGLAA Q+ V RLVV Sbjct: 1 MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDASGIGLAATQVDVHERLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+II SD+ + +EGCLS+P V RS + V+ +D N + Sbjct: 61 IDVSEE--RNEPLVLINPEIIWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I A+GLLA C+QHELDHL G +F+++LS LKR+ I K+ K Sbjct: 119 LRTIEAEGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLK 162 >gi|163803316|ref|ZP_02197194.1| peptide deformylase [Vibrio sp. AND4] gi|159172886|gb|EDP57725.1| peptide deformylase [Vibrio sp. AND4] Length = 172 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 109/160 (68%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDVSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 66 T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEYTFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|294789398|ref|ZP_06754635.1| peptide deformylase [Simonsiella muelleri ATCC 29453] gi|294482611|gb|EFG30301.1| peptide deformylase [Simonsiella muelleri ATCC 29453] Length = 171 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 104/160 (65%), Gaps = 3/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L V++P+ ++N I L+ +M E MY + GIGLAA Q+ V R+VVIDL Sbjct: 5 PILKYPDPKLHTVAKPVSEVNDRIKKLVADMAETMYESRGIGLAATQVDVHERVVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R + INP IIT D + Y+EGCLS+P V R+ +TV ++D + Q + Sbjct: 65 EE--RNQLITLINP-IITHKDGETTYEEGCLSVPGVYDTVTRAERVTVEFLDADGHAQKL 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHELDHL G +F+++LS LK++ I KM K Sbjct: 122 DADGLLAICIQHELDHLQGKVFVEYLSPLKQNRIKTKMKK 161 >gi|237746966|ref|ZP_04577446.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS] gi|229378317|gb|EEO28408.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS] Length = 183 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 69/164 (42%), Positives = 111/164 (67%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ +PDP L + SRP+ +S++ L++NM + MY G+GLAA Q+ ++VV Sbjct: 1 MARLPILRYPDPRLLKPSRPVTSFDSELKTLVENMAQTMYEAPGVGLAAPQVNAHRQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+II S++ ++++EGCLS+P +++R A +TVR D + + Sbjct: 61 IDVSEK--RNELHVFINPQIIKASEEKTLFEEGCLSLPGIYDEIERPARVTVRAQDVDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K Sbjct: 119 AFEMEAEGLLAVCVQHEIDHLKGRVFVDYLSPMKRNRIKKKLLK 162 >gi|241766760|ref|ZP_04764590.1| peptide deformylase [Acidovorax delafieldii 2AN] gi|241362866|gb|EER58605.1| peptide deformylase [Acidovorax delafieldii 2AN] Length = 169 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 73/166 (43%), Positives = 110/166 (66%), Gaps = 4/166 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P++ +++ I L+ +ML MY GIGLAA Q+ V R+VVID+ Sbjct: 5 PILCYPDPRLHKVAQPVQAVDARIEALVADMLATMYDAHGIGLAATQVDVHERVVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P+V INP+I+ S + V EGCLS+P V+R+A + VR +D + + I Sbjct: 65 EE--RNEPLVLINPEIVWASAERHVGDEGCLSVPGIYDGVERAAAVHVRALDAQGKSRTI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K Q RD Sbjct: 123 EAEGLLAVCMQHEMDHLMGKVFVEYLSPLKRNRIKTKLLK--QQRD 166 >gi|301155307|emb|CBW14773.1| peptide deformylase [Haemophilus parainfluenzae T3T1] Length = 169 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ V P+ ++N DI ++D+M + MY +GIGLAA Q+ +L R++ ID++ Sbjct: 6 VLIYPDDHLKVVCEPVVEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N +V INP+I+ + + +EGCLSIP +RA V R +TV+ +D + + + Sbjct: 65 -GDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 161 >gi|297180810|gb|ADI17016.1| N-formylmethionyl-tRNA deformylase [uncultured Vibrionales bacterium HF0010_22E23] Length = 170 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E + +I ++D+MLE MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDERLRTVAKPVESVTPEIQKIVDDMLETMYEENGIGLAATQVDIHQRIVVIDVSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P +A V R+A +TV+ +D + Sbjct: 66 T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGSQALVPRAAEVTVKALDRDGNEYQFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ Sbjct: 123 ADDLLAICVQHELDHLMGKLFVDYLSPLKRQRIKQKLEKI 162 >gi|114561212|ref|YP_748725.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] gi|114332505|gb|ABI69887.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] Length = 188 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 102/160 (63%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ + IDNMLE MY GIGLAA Q+ +L+V+DLQD Sbjct: 27 FPDERLRTIAQPVTDFGPQLQTQIDNMLETMYLEKGIGLAATQVDFHQQLIVMDLQDEVE 86 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P +FINP+I+ S D + +EGCLS+P A V R+ F+T++ +D + + I+ AD Sbjct: 87 R--PTIFINPQIVASSGDLA-NEEGCLSVPGIYAKVDRAEFVTLKALDRHGKEFIVEADE 143 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 L A C+QHE+DHL G LF+D+LS LKR I K+ K +L Sbjct: 144 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARL 183 >gi|311696635|gb|ADP99508.1| peptide deformylase [marine bacterium HP15] Length = 167 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP LR +++P+E++ LID+M E MY GIGLAA Q+ V +++V+DL + Sbjct: 8 YPDPRLRTIAKPVEEVTDADRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVMDLSED-- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP++ + QEGCLS+P + DV+R +R MD + + + A G Sbjct: 66 KSEPRVFINPEVEVLDGEREAMQEGCLSVPGFYEDVERIEHCMIRAMDRDGKPFELEAKG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHLNG LF+D+LS LKR+ I KK+ K Sbjct: 126 LLAVCIQHEMDHLNGRLFVDYLSSLKRNRIRKKLEK 161 >gi|148259426|ref|YP_001233553.1| peptide deformylase [Acidiphilium cryptum JF-5] gi|146401107|gb|ABQ29634.1| peptide deformylase [Acidiphilium cryptum JF-5] Length = 188 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 2/160 (1%) Query: 6 LVIFPDPILR-RVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++I PD LR + R + D+ L+ M MY GIGLAA QIGV RLVV+DL Sbjct: 18 ILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDLA 77 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +K PMV INP+I S++ +EGCLS+P A+V R I+V + D + + + I Sbjct: 78 PD-DQKQPMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRTI 136 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K Sbjct: 137 DADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAK 176 >gi|308188323|ref|YP_003932454.1| peptide deformylase [Pantoea vagans C9-1] gi|308058833|gb|ADO11005.1| peptide deformylase [Pantoea vagans C9-1] Length = 170 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 109/159 (68%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR+V+ P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ +V INP+++ S + + +EGCLSIP+ RA V R+ + VR +D + + + A Sbjct: 67 REERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDRDGKSFELEASE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LFID+LS LKR I K+ KL + Sbjct: 126 LLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLAR 164 >gi|323496960|ref|ZP_08101988.1| peptide deformylase [Vibrio sinaloensis DSM 21326] gi|323318034|gb|EGA71017.1| peptide deformylase [Vibrio sinaloensis DSM 21326] Length = 173 Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E++ +I +D+M+E MY +GIGLAA Q+ R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 66 T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGEEYTFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|257456003|ref|ZP_05621212.1| peptide deformylase [Enhydrobacter aerosaccus SK60] gi|257446592|gb|EEV21626.1| peptide deformylase [Enhydrobacter aerosaccus SK60] Length = 176 Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 69/170 (40%), Positives = 108/170 (63%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP LR +++P+ + ++ LID+M E MY+ GIGLAA Q+ +LVV Sbjct: 1 MTLRTILNYPDPRLRTLAKPVTHFDDELKTLIDDMFETMYAAKGIGLAATQVDEHIQLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP + +D+ Y+EGCLS+P+Y V R + + +D Sbjct: 61 MDLSEDGSQ--PRVFINPIVTPLADELYSYEEGCLSVPEYYDKVDRPKHVKIEALDAQGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A GLLA C+QHE+DHLNG +F+D+LS+LK+D K+ K+V+ R+ Sbjct: 119 PFVEEAQGLLAVCIQHEIDHLNGKIFVDYLSKLKQDRARDKVRKVVKQRE 168 >gi|254229999|ref|ZP_04923400.1| peptide deformylase [Vibrio sp. Ex25] gi|269966999|ref|ZP_06181069.1| peptide deformylase [Vibrio alginolyticus 40B] gi|151937501|gb|EDN56358.1| peptide deformylase [Vibrio sp. Ex25] gi|269828393|gb|EEZ82657.1| peptide deformylase [Vibrio alginolyticus 40B] Length = 203 Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 108/160 (67%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E + +I ++D+M+E MY +GIGLAA Q+ + R+VVID+ + Sbjct: 37 VLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDISE 96 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 97 T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEFTFE 153 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 154 ADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 193 >gi|254507283|ref|ZP_05119419.1| peptide deformylase [Vibrio parahaemolyticus 16] gi|219549743|gb|EED26732.1| peptide deformylase [Vibrio parahaemolyticus 16] Length = 172 Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 66 T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGEEYTFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|157148861|ref|YP_001456180.1| peptide deformylase [Citrobacter koseri ATCC BAA-895] gi|166198515|sp|A8AQI1|DEF_CITK8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157086066|gb|ABV15744.1| hypothetical protein CKO_04699 [Citrobacter koseri ATCC BAA-895] Length = 169 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 113/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKSFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|326402652|ref|YP_004282733.1| peptide deformylase [Acidiphilium multivorum AIU301] gi|325049513|dbj|BAJ79851.1| peptide deformylase [Acidiphilium multivorum AIU301] Length = 185 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 2/160 (1%) Query: 6 LVIFPDPILR-RVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++I PD LR + R + D+ L+ M MY GIGLAA QIGV RLVV+DL Sbjct: 15 ILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDLA 74 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +K PMV INP+I S++ +EGCLS+P A+V R I+V + D + + + I Sbjct: 75 PD-DQKQPMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRTI 133 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K Sbjct: 134 DADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAK 173 >gi|332991529|gb|AEF01584.1| peptide deformylase [Alteromonas sp. SN2] Length = 169 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++P+E++N DI L+ +M E M +GIGLAA Q+ ++VV+++ + Sbjct: 9 FPDERLRTVAKPVEEVNDDIKQLVSDMFETMKDENGIGLAATQVDRHVQVVVMNVAED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+I T D ++ +EGCLS+P A V+R+ ITV+ ++ N + + ADG Sbjct: 67 QDEPRVFINPEI-TKKDGSTISEEGCLSVPGNYAKVERAEEITVKALNENGEAFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 126 LLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165 >gi|146329347|ref|YP_001209086.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A] gi|158513298|sp|A5EWL8|DEF_DICNV RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146232817|gb|ABQ13795.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A] Length = 181 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 9/168 (5%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I PDP LR ++P+ + + ++ NM E MY GIGLAA Q+ + RL+V+D+ Sbjct: 6 ILIHPDPRLRLPAQPVTHFDDALAEIVQNMYETMYHFHGIGLAAPQVNIQQRLIVMDVPQ 65 Query: 66 HAHRK---------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + + +V +NP+I+ S++ Y+EGCLS+P+ A V R A ITVRY D Sbjct: 66 RSAEEGEKAEQIPSDKLVLVNPEIVQRSEECQDYEEGCLSLPNQYALVTRPANITVRYQD 125 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q A GLL+ C+QHE+DHLNG LFIDHLSRLKR+ + KK++K Sbjct: 126 ITGATQERAAQGLLSVCIQHEIDHLNGGLFIDHLSRLKRERLEKKLAK 173 >gi|239904668|ref|YP_002951406.1| peptide deformylase [Desulfovibrio magneticus RS-1] gi|239794531|dbj|BAH73520.1| peptide deformylase [Desulfovibrio magneticus RS-1] Length = 174 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 101/165 (61%), Gaps = 3/165 (1%) Query: 5 PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL I +P P+L + + P+ +I I L M E MY+ GIGLAA Q+G RL+VID Sbjct: 2 PLEILKYPHPVLAKKAEPVAEITDAIRELAAGMAEAMYANQGIGLAAPQVGASIRLIVID 61 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 L R+ M +NP +IT + +EGCLS+ YR V+R+A +TV +D Q Sbjct: 62 LSGPDKREALMTLVNP-VITAASGEQEDEEGCLSVRSYRTKVRRAANVTVTALDLAGQPL 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I AD LLA CLQHE+DHL+G+LFID +SRLKR M K++ + Q Sbjct: 121 TIEADELLAVCLQHEVDHLDGVLFIDRISRLKRAMYDKRVKRWAQ 165 >gi|83594679|ref|YP_428431.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170] gi|83577593|gb|ABC24144.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170] Length = 172 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 76/161 (47%), Positives = 108/161 (67%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PDP L + + P+E ++ I L+D+MLE MY GIGLAA Q+GVL R++V+D Sbjct: 5 PILTAPDPRLTKKALPVETVDVSIRKLMDDMLETMYLAPGIGLAAPQVGVLKRVIVLDPA 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 PM NP+II S+D Y+EGCLS+P+ V R + VRY+D + + + I Sbjct: 65 REDEAPRPMRLANPEIIWSSEDTKPYEEGCLSVPEQYDTVVRPDRVRVRYLDPDNEIREI 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLLA LQHE+DHL+GILF+D+LS LKR+M+ +K+ K+ Sbjct: 125 DADGLLAVILQHEIDHLDGILFVDYLSSLKRNMMLRKLRKM 165 >gi|28899816|ref|NP_799421.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|153837667|ref|ZP_01990334.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] gi|260362018|ref|ZP_05775023.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|260876495|ref|ZP_05888850.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|260897448|ref|ZP_05905944.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|260901339|ref|ZP_05909734.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|31076643|sp|Q87KD5|DEF1_VIBPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|28808068|dbj|BAC61305.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|149748957|gb|EDM59784.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] gi|308087895|gb|EFO37590.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|308090413|gb|EFO40108.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|308109891|gb|EFO47431.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|308114143|gb|EFO51683.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|328471167|gb|EGF42069.1| peptide deformylase [Vibrio parahaemolyticus 10329] Length = 172 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 108/160 (67%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P++ + +I ++D+M+E MY +GIGLAA Q+ + R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVDAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 66 T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEFTFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|264680865|ref|YP_003280775.1| peptide deformylase [Comamonas testosteroni CNB-2] gi|262211381|gb|ACY35479.1| peptide deformylase [Comamonas testosteroni CNB-2] Length = 170 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 107/160 (66%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P+ +++ I L+ +MLE MY GIGLAA QI V R++VID+ Sbjct: 5 PILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R PM INP+I+ S++ + +EGCLS+P V+RS + V+ +D N + I Sbjct: 65 EK--RNEPMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDENGNSREI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K Sbjct: 123 DAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVK 162 >gi|300721398|ref|YP_003710669.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] gi|297627886|emb|CBJ88432.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] Length = 170 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/161 (44%), Positives = 112/161 (69%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR +++P+EK++++I +ID+M E MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 9 YPDERLRTIAKPVEKVDAEIQRIIDDMFETMYAEEGIGLAATQVDIHQRIVVIDVSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 RK +V INP+++ S + + +EGCLS+P+ R V R I ++ +D + Q + ADG Sbjct: 67 RKQLLVLINPELLNESGETGI-EEGCLSVPEQRGFVPRFEQIKIKALDYHGQPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +LR Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKIDRLR 166 >gi|330447316|ref|ZP_08310966.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491507|dbj|GAA05463.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 169 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E I +I +ID+MLE MY +GIGLAA Q+ + R+VVID + Sbjct: 6 VLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVVIDTSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I + + +EGCLS+P RA V R+A ++V +D N Sbjct: 66 T--RDQPMVLINPEITEKRGEDGI-EEGCLSVPGARALVPRAAEVSVTALDRNGDTICFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ Sbjct: 123 ADELLAICIQHELDHLAGKLFVDYLSPLKRQRIKQKLEKI 162 >gi|332289299|ref|YP_004420151.1| peptide deformylase [Gallibacterium anatis UMN179] gi|330432195|gb|AEC17254.1| peptide deformylase [Gallibacterium anatis UMN179] Length = 171 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 105/159 (66%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V+ P+EK++ +I IDNM E MY +GIGLAA Q+ R++ ID++ Sbjct: 6 VLCFPDERLRTVAAPVEKVDDEIREFIDNMFETMYQQEGIGLAATQVNRHQRIITIDVE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + N +V INP+I+ SD + +EGCLS+P +R V R +TV+ +D N + + Sbjct: 65 -GDKSNQLVLINPEIVE-SDGETGIEEGCLSVPGFRGLVPRKEKVTVKALDRNGEPFTLE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A LLA C+QHE+DHLNG++F+D+LS LKR+ I K+ K Sbjct: 123 ASDLLAICIQHEIDHLNGVMFVDYLSPLKRNRIKDKLVK 161 >gi|94499926|ref|ZP_01306462.1| peptide deformylase [Oceanobacter sp. RED65] gi|94428127|gb|EAT13101.1| peptide deformylase [Oceanobacter sp. RED65] Length = 171 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 98/156 (62%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+E++ LID+M E MY GIGLAA Q+ V +++V+D+ + Sbjct: 9 FPDTRLRTIAKPVEEVTDAHRKLIDDMFETMYDCPGIGLAATQVNVHEQIIVMDISED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINPK+ + QEGCLS+P + DV+R + +D N Q + A G Sbjct: 67 RSEPHVFINPKVTVLDGEPEKMQEGCLSVPGFYEDVERIEHCKIEALDRNGQPYELEARG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHLNG LF+D+LS KRD I KK+ K Sbjct: 127 LLAVCIQHEMDHLNGKLFVDYLSTTKRDRIRKKLEK 162 >gi|206889750|ref|YP_002248176.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347] gi|238058215|sp|B5YIL7|DEF_THEYD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|206741688|gb|ACI20745.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 165 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD +L++ + I +IN D+ LIDNM+E MY+ +GIGLAA Q+GVL RL+V+D Sbjct: 9 YPDEVLKKKAETISEINGDLQKLIDNMIETMYNANGIGLAAPQVGVLKRLIVVDTSPREQ 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 ++ +V INP+ IT S+ + +EGCLS+P + +KR + V+ +D N + I A G Sbjct: 69 NQSLIVLINPE-ITDSEGEILSEEGCLSLPGFTTRLKRKERVIVKGLDRNGKEIEIEATG 127 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 LLA LQHE+DHL+GIL ID +S LKR++ KK Sbjct: 128 LLARALQHEIDHLDGILLIDKISPLKRELFRKK 160 >gi|304399256|ref|ZP_07381122.1| peptide deformylase [Pantoea sp. aB] gi|304353182|gb|EFM17563.1| peptide deformylase [Pantoea sp. aB] Length = 170 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 108/159 (67%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR+V+ P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ +V INP+++ S + + +EGCLSIP+ RA V R+ + VR +D + + A Sbjct: 67 REERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDRDGNSFELEASE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LFID+LS LKR I K+ KL + Sbjct: 126 LLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLAR 164 >gi|93004869|ref|YP_579306.1| peptide deformylase [Psychrobacter cryohalolentis K5] gi|123386822|sp|Q1QET1|DEF_PSYCK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|92392547|gb|ABE73822.1| peptide deformylase [Psychrobacter cryohalolentis K5] Length = 184 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 110/166 (66%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP LR ++ P++++ ++I LI +M+E MY GIGLAA Q+ +L+V+DL Sbjct: 5 PILSYPDPRLRTIATPVKEVTAEIKTLITDMIETMYDAQGIGLAASQVDHHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + +P VFINPK+ ++ Y+EGCLS+PD V+R + + +D N Sbjct: 65 ED--KDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEALDENGNKIDE 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +GLLA C+QHE+DHLNG++F+D+LSRLK+ K+ K++++R+ Sbjct: 123 EVEGLLAVCIQHEMDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168 >gi|281306913|pdb|2W3T|A Chain A, Chloro Complex Of The Ni-Form Of E.Coli Deformylase gi|281306914|pdb|2W3U|A Chain A, Formate Complex Of The Ni-Form Of E.Coli Deformylase Length = 188 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 8 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 66 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 125 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165 >gi|317486329|ref|ZP_07945159.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6] gi|316922399|gb|EFV43655.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6] Length = 172 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 101/160 (63%), Gaps = 1/160 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+P+L + S PI ++ +I L + M E MY +DGIG+AA Q+G L RLV+ID+ Sbjct: 5 IVTYPNPLLGKPSLPITEVTDEIRKLAEEMTEAMYKSDGIGIAAPQVGQLIRLVIIDVTG 64 Query: 66 HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 R+ MV +NP D + +EGCLS+PDYR+ V+R+A + V D + Sbjct: 65 PEKREGKMVLVNPVWTPLPDAGYVESEEGCLSVPDYRSKVRRTARVHVEATDLDGNPVSF 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD +LA C+QHE+DHL+G LFID +SRLKR M K+ K Sbjct: 125 DADDILAICVQHEIDHLDGKLFIDRISRLKRIMFENKLKK 164 >gi|71905663|ref|YP_283250.1| peptide deformylase [Dechloromonas aromatica RCB] gi|71845284|gb|AAZ44780.1| peptide deformylase [Dechloromonas aromatica RCB] Length = 167 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 103/160 (64%), Gaps = 3/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP L++V+ P+ K++ I L+ +M E MY GIGLAA Q+ V R+VVID+ Sbjct: 5 PILRFPDPRLKKVALPVAKVDDSIRKLVADMAETMYEAPGIGLAATQVDVHKRVVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + FINP +++ + +EGCLS+P V+R+ + V Y+D + Q + Sbjct: 65 ED--KSELQAFINP-VLSRCEGSQTGEEGCLSVPGIYDKVERAESVVVTYLDLDGNQQTL 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA CLQHELDHLNG +F+DHLS LK+ I K++K Sbjct: 122 AADGLLAVCLQHELDHLNGTVFVDHLSLLKQTRIRNKLAK 161 >gi|4699740|pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni2+ Containing Form, Cocrystallized With Inhibitor Polyethylene Glycol (Peg) gi|4699741|pdb|1ICJ|B Chain B, Pdf Protein Is Crystallized As Ni2+ Containing Form, Cocrystallized With Inhibitor Polyethylene Glycol (Peg) gi|4699742|pdb|1ICJ|C Chain C, Pdf Protein Is Crystallized As Ni2+ Containing Form, Cocrystallized With Inhibitor Polyethylene Glycol (Peg) gi|5821888|pdb|1BS4|A Chain A, Peptide Deformylase As Zn2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821889|pdb|1BS4|B Chain B, Peptide Deformylase As Zn2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821890|pdb|1BS4|C Chain C, Peptide Deformylase As Zn2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821891|pdb|1BS5|A Chain A, Peptide Deformylase As Zn2+ Containing Form gi|5821892|pdb|1BS5|B Chain B, Peptide Deformylase As Zn2+ Containing Form gi|5821893|pdb|1BS5|C Chain C, Peptide Deformylase As Zn2+ Containing Form gi|5821894|pdb|1BS6|A Chain A, Peptide Deformylase As Ni2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821895|pdb|1BS6|B Chain B, Peptide Deformylase As Ni2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821896|pdb|1BS6|C Chain C, Peptide Deformylase As Ni2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821900|pdb|1BS7|A Chain A, Peptide Deformylase As Ni2+ Containing Form gi|5821901|pdb|1BS7|B Chain B, Peptide Deformylase As Ni2+ Containing Form gi|5821902|pdb|1BS7|C Chain C, Peptide Deformylase As Ni2+ Containing Form gi|5821903|pdb|1BS8|A Chain A, Peptide Deformylase As Zn2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821904|pdb|1BS8|B Chain B, Peptide Deformylase As Zn2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821905|pdb|1BS8|C Chain C, Peptide Deformylase As Zn2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821915|pdb|1BSZ|A Chain A, Peptide Deformylase As Fe2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821916|pdb|1BSZ|B Chain B, Peptide Deformylase As Fe2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821917|pdb|1BSZ|C Chain C, Peptide Deformylase As Fe2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|7767088|pdb|1BSJ|A Chain A, Cobalt Deformylase Inhibitor Complex From E.Coli gi|7767089|pdb|1BSK|A Chain A, Zinc Deformylase Inhibitor Complex From E.Coli gi|16975207|pdb|1G27|A Chain A, Crystal Structure Of E.Coli Polypeptide Deformylase Complexed With The Inhibitor Bb-3497 gi|16975208|pdb|1G27|B Chain B, Crystal Structure Of E.Coli Polypeptide Deformylase Complexed With The Inhibitor Bb-3497 gi|16975209|pdb|1G27|C Chain C, Crystal Structure Of E.Coli Polypeptide Deformylase Complexed With The Inhibitor Bb-3497 gi|16975210|pdb|1G2A|A Chain A, The Crystal Structure Of E.Coli Peptide Deformylase Complexed With Actinonin gi|16975211|pdb|1G2A|B Chain B, The Crystal Structure Of E.Coli Peptide Deformylase Complexed With Actinonin gi|16975212|pdb|1G2A|C Chain C, The Crystal Structure Of E.Coli Peptide Deformylase Complexed With Actinonin gi|22219291|pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide Deformylase Complexed With Antibiotic Actinonin gi|22219292|pdb|1LRU|B Chain B, Crystal Structure Of E.Coli Peptide Deformylase Complexed With Antibiotic Actinonin gi|22219293|pdb|1LRU|C Chain C, Crystal Structure Of E.Coli Peptide Deformylase Complexed With Antibiotic Actinonin gi|62738424|pdb|1XEM|A Chain A, High Resolution Crystal Structure Of Escherichia Coli Zinc- Peptide Deformylase Bound To Formate gi|62738425|pdb|1XEN|A Chain A, High Resolution Crystal Structure Of Escherichia Coli Iron- Peptide Deformylase Bound To Formate gi|62738426|pdb|1XEO|A Chain A, High Resolution Crystals Structure Of Cobalt- Peptide Deformylase Bound To Formate gi|75766233|pdb|2AI8|A Chain A, E.Coli Polypeptide Deformylase Complexed With Sb-485343 gi|75766234|pdb|2AI8|B Chain B, E.Coli Polypeptide Deformylase Complexed With Sb-485343 gi|75766235|pdb|2AI8|C Chain C, E.Coli Polypeptide Deformylase Complexed With Sb-485343 Length = 168 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 8 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 66 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 125 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165 >gi|254447455|ref|ZP_05060921.1| peptide deformylase [gamma proteobacterium HTCC5015] gi|198262798|gb|EDY87077.1| peptide deformylase [gamma proteobacterium HTCC5015] Length = 169 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 107/158 (67%), Gaps = 3/158 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR+ +P+E+++ ++ ID+M E MY GIGLAA+Q+ RL++ Sbjct: 1 MAKLEILHFPDPRLRQACKPVEQVDDELRQFIDDMFETMYDAPGIGLAAIQVNRHERLLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + A NP+VFINP+II +D V QEGCLS+P + +V+R+ I V+ +D + + Sbjct: 61 TDVSEDA--SNPLVFINPEIIE-ADGVEVTQEGCLSVPGFYENVERAEHIVVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + DGL A C+QHE+DHL+G LF+D+LS LKR+ I Sbjct: 118 AFEMACDGLQAVCVQHEIDHLDGKLFVDYLSPLKRNRI 155 >gi|113968375|ref|YP_732168.1| peptide deformylase [Shewanella sp. MR-4] gi|114045540|ref|YP_736090.1| peptide deformylase [Shewanella sp. MR-7] gi|117918494|ref|YP_867686.1| peptide deformylase [Shewanella sp. ANA-3] gi|113883059|gb|ABI37111.1| peptide deformylase [Shewanella sp. MR-4] gi|113886982|gb|ABI41033.1| peptide deformylase [Shewanella sp. MR-7] gi|117610826|gb|ABK46280.1| peptide deformylase [Shewanella sp. ANA-3] Length = 168 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR + P+ + +++ ID+M E MY GIGLAA Q+ +L+V+DLQD Sbjct: 9 FPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVD 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP+II S DF +EGCLS+P A V R+ F+TV+ +D + + AD Sbjct: 69 R--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEFTVEADE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L A C+QHE+DHL G LF+D+LS LKR I +K+ K Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEK 161 >gi|15803814|ref|NP_289848.1| peptide deformylase [Escherichia coli O157:H7 EDL933] gi|15833406|ref|NP_312179.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai] gi|16131166|ref|NP_417745.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655] gi|26249871|ref|NP_755911.1| peptide deformylase [Escherichia coli CFT073] gi|82545649|ref|YP_409596.1| peptide deformylase [Shigella boydii Sb227] gi|82778584|ref|YP_404933.1| peptide deformylase [Shigella dysenteriae Sd197] gi|89110724|ref|AP_004504.1| peptide deformylase [Escherichia coli str. K-12 substr. W3110] gi|91212713|ref|YP_542699.1| peptide deformylase [Escherichia coli UTI89] gi|110643525|ref|YP_671255.1| peptide deformylase [Escherichia coli 536] gi|117625569|ref|YP_858892.1| peptide deformylase [Escherichia coli APEC O1] gi|157156138|ref|YP_001464754.1| peptide deformylase [Escherichia coli E24377A] gi|157162760|ref|YP_001460078.1| peptide deformylase [Escherichia coli HS] gi|168752265|ref|ZP_02777287.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113] gi|168758514|ref|ZP_02783521.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401] gi|168764969|ref|ZP_02789976.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501] gi|168769148|ref|ZP_02794155.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486] gi|168777856|ref|ZP_02802863.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196] gi|168783853|ref|ZP_02808860.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076] gi|168786176|ref|ZP_02811183.1| peptide deformylase [Escherichia coli O157:H7 str. EC869] gi|170018478|ref|YP_001723432.1| peptide deformylase [Escherichia coli ATCC 8739] gi|170082807|ref|YP_001732127.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B] gi|170769511|ref|ZP_02903964.1| peptide deformylase [Escherichia albertii TW07627] gi|191169294|ref|ZP_03031043.1| peptide deformylase [Escherichia coli B7A] gi|191174456|ref|ZP_03035957.1| peptide deformylase [Escherichia coli F11] gi|193066484|ref|ZP_03047528.1| peptide deformylase [Escherichia coli E22] gi|193071544|ref|ZP_03052453.1| peptide deformylase [Escherichia coli E110019] gi|194430283|ref|ZP_03062778.1| peptide deformylase [Escherichia coli B171] gi|194435085|ref|ZP_03067323.1| peptide deformylase [Shigella dysenteriae 1012] gi|194439997|ref|ZP_03072055.1| peptide deformylase [Escherichia coli 101-1] gi|195939834|ref|ZP_03085216.1| peptide deformylase [Escherichia coli O157:H7 str. EC4024] gi|208806494|ref|ZP_03248831.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206] gi|208814593|ref|ZP_03255922.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045] gi|208821413|ref|ZP_03261733.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042] gi|209400361|ref|YP_002272743.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115] gi|209920752|ref|YP_002294836.1| peptide deformylase [Escherichia coli SE11] gi|215488586|ref|YP_002331017.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69] gi|217325115|ref|ZP_03441199.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588] gi|218550562|ref|YP_002384353.1| peptide deformylase [Escherichia fergusonii ATCC 35469] gi|218555844|ref|YP_002388757.1| peptide deformylase [Escherichia coli IAI1] gi|218560348|ref|YP_002393261.1| peptide deformylase [Escherichia coli S88] gi|218691573|ref|YP_002399785.1| peptide deformylase [Escherichia coli ED1a] gi|218696979|ref|YP_002404646.1| peptide deformylase [Escherichia coli 55989] gi|218706894|ref|YP_002414413.1| peptide deformylase [Escherichia coli UMN026] gi|227883418|ref|ZP_04001223.1| peptide deformylase [Escherichia coli 83972] gi|237703016|ref|ZP_04533497.1| peptide deformylase [Escherichia sp. 3_2_53FAA] gi|238902377|ref|YP_002928173.1| peptide deformylase [Escherichia coli BW2952] gi|253771890|ref|YP_003034721.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038447|ref|ZP_04872503.1| peptide deformylase [Escherichia sp. 1_1_43] gi|254163214|ref|YP_003046322.1| peptide deformylase [Escherichia coli B str. REL606] gi|254795223|ref|YP_003080060.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359] gi|256020645|ref|ZP_05434510.1| peptide deformylase [Shigella sp. D9] gi|256025986|ref|ZP_05439851.1| peptide deformylase [Escherichia sp. 4_1_40B] gi|260846084|ref|YP_003223862.1| peptide deformylase [Escherichia coli O103:H2 str. 12009] gi|261224591|ref|ZP_05938872.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK2000] gi|261254515|ref|ZP_05947048.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK966] gi|293406884|ref|ZP_06650808.1| peptide deformylase [Escherichia coli FVEC1412] gi|293412705|ref|ZP_06655373.1| peptide deformylase [Escherichia coli B354] gi|293416705|ref|ZP_06659342.1| peptide deformylase [Escherichia coli B185] gi|293453605|ref|ZP_06664024.1| peptide deformylase [Escherichia coli B088] gi|297517904|ref|ZP_06936290.1| peptide deformylase [Escherichia coli OP50] gi|298382625|ref|ZP_06992220.1| def [Escherichia coli FVEC1302] gi|300815503|ref|ZP_07095728.1| peptide deformylase [Escherichia coli MS 107-1] gi|300896634|ref|ZP_07115151.1| peptide deformylase [Escherichia coli MS 198-1] gi|300903535|ref|ZP_07121457.1| peptide deformylase [Escherichia coli MS 84-1] gi|300918261|ref|ZP_07134865.1| peptide deformylase [Escherichia coli MS 115-1] gi|300921905|ref|ZP_07138060.1| peptide deformylase [Escherichia coli MS 182-1] gi|300932179|ref|ZP_07147459.1| peptide deformylase [Escherichia coli MS 187-1] gi|300973966|ref|ZP_07172373.1| peptide deformylase [Escherichia coli MS 200-1] gi|300979823|ref|ZP_07174725.1| peptide deformylase [Escherichia coli MS 45-1] gi|301018856|ref|ZP_07183095.1| peptide deformylase [Escherichia coli MS 69-1] gi|301021204|ref|ZP_07185238.1| peptide deformylase [Escherichia coli MS 196-1] gi|301046057|ref|ZP_07193236.1| peptide deformylase [Escherichia coli MS 185-1] gi|301305496|ref|ZP_07211588.1| peptide deformylase [Escherichia coli MS 124-1] gi|301325148|ref|ZP_07218680.1| peptide deformylase [Escherichia coli MS 78-1] gi|301643894|ref|ZP_07243924.1| peptide deformylase [Escherichia coli MS 146-1] gi|306816371|ref|ZP_07450509.1| peptide deformylase [Escherichia coli NC101] gi|307139969|ref|ZP_07499325.1| peptide deformylase [Escherichia coli H736] gi|307315135|ref|ZP_07594718.1| peptide deformylase [Escherichia coli W] gi|309794562|ref|ZP_07688984.1| peptide deformylase [Escherichia coli MS 145-7] gi|312968388|ref|ZP_07782598.1| peptide deformylase [Escherichia coli 2362-75] gi|312972452|ref|ZP_07786626.1| peptide deformylase [Escherichia coli 1827-70] gi|331643982|ref|ZP_08345111.1| peptide deformylase [Escherichia coli H736] gi|331649083|ref|ZP_08350169.1| peptide deformylase [Escherichia coli M605] gi|331654879|ref|ZP_08355878.1| peptide deformylase [Escherichia coli M718] gi|331659577|ref|ZP_08360515.1| peptide deformylase [Escherichia coli TA206] gi|331664899|ref|ZP_08365800.1| peptide deformylase [Escherichia coli TA143] gi|331670116|ref|ZP_08370955.1| peptide deformylase [Escherichia coli TA271] gi|331679355|ref|ZP_08380025.1| peptide deformylase [Escherichia coli H591] gi|332281841|ref|ZP_08394254.1| peptide deformylase [Shigella sp. D9] gi|62288071|sp|P0A6K3|DEF_ECOLI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62288072|sp|P0A6K4|DEF_ECOL6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62288073|sp|P0A6K5|DEF_ECO57 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122990717|sp|Q1R646|DEF_ECOUT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123048786|sp|Q0TCH5|DEF_ECOL5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123728325|sp|Q31VZ0|DEF_SHIBS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123769545|sp|Q32B63|DEF_SHIDS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512616|sp|A1AGH8|DEF_ECOK1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167012062|sp|A8A591|DEF_ECOHS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083070|sp|B1IQ13|DEF_ECOLC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229487486|sp|B1X6D9|DEF_ECODH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238058209|sp|B6I200|DEF_ECOSE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238058220|sp|B5YT06|DEF_ECO5E RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767581|sp|B7UK10|DEF_ECO27 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767582|sp|B7MCQ2|DEF_ECO45 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767583|sp|B7LHY3|DEF_ECO55 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767585|sp|B7N171|DEF_ECO81 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767586|sp|B7M0Z2|DEF_ECO8A RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767587|sp|B7NDQ8|DEF_ECOLU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767589|sp|B7LRQ3|DEF_ESCF3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|259645179|sp|C4ZUE1|DEF_ECOBW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|266618787|pdb|3K6L|A Chain A, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex With Peptidomimetic Ligand Bb2827 gi|266618788|pdb|3K6L|B Chain B, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex With Peptidomimetic Ligand Bb2827 gi|266618789|pdb|3K6L|C Chain C, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex With Peptidomimetic Ligand Bb2827 gi|12517916|gb|AAG58408.1|AE005556_1 peptide deformylase [Escherichia coli O157:H7 str. EDL933] gi|26110299|gb|AAN82485.1|AE016767_245 Peptide deformylase [Escherichia coli CFT073] gi|41474|emb|CAA45206.1| fms [Escherichia coli K-12] gi|443989|emb|CAA54367.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli K-12] gi|471304|emb|CAA54826.1| deformylase [Escherichia coli] gi|606221|gb|AAA58084.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli str. K-12 substr. MG1655] gi|1789682|gb|AAC76312.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655] gi|13363625|dbj|BAB37575.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai] gi|81242732|gb|ABB63442.1| peptide deformylase [Shigella dysenteriae Sd197] gi|81247060|gb|ABB67768.1| peptide deformylase [Shigella boydii Sb227] gi|85676755|dbj|BAE78005.1| peptide deformylase [Escherichia coli str. K12 substr. W3110] gi|91074287|gb|ABE09168.1| peptide deformylase [Escherichia coli UTI89] gi|110345117|gb|ABG71354.1| peptide deformylase [Escherichia coli 536] gi|115514693|gb|ABJ02768.1| peptide deformylase [Escherichia coli APEC O1] gi|157068440|gb|ABV07695.1| peptide deformylase [Escherichia coli HS] gi|157078168|gb|ABV17876.1| peptide deformylase [Escherichia coli E24377A] gi|169753406|gb|ACA76105.1| peptide deformylase [Escherichia coli ATCC 8739] gi|169890642|gb|ACB04349.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B] gi|170121568|gb|EDS90499.1| peptide deformylase [Escherichia albertii TW07627] gi|187766994|gb|EDU30838.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196] gi|188013857|gb|EDU51979.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113] gi|188998869|gb|EDU67855.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076] gi|189354695|gb|EDU73114.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401] gi|189361833|gb|EDU80252.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486] gi|189365123|gb|EDU83539.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501] gi|189374112|gb|EDU92528.1| peptide deformylase [Escherichia coli O157:H7 str. EC869] gi|190900649|gb|EDV60449.1| peptide deformylase [Escherichia coli B7A] gi|190905264|gb|EDV64902.1| peptide deformylase [Escherichia coli F11] gi|192925865|gb|EDV80515.1| peptide deformylase [Escherichia coli E22] gi|192955132|gb|EDV85626.1| peptide deformylase [Escherichia coli E110019] gi|194411672|gb|EDX27999.1| peptide deformylase [Escherichia coli B171] gi|194416692|gb|EDX32823.1| peptide deformylase [Shigella dysenteriae 1012] gi|194421049|gb|EDX37078.1| peptide deformylase [Escherichia coli 101-1] gi|208726295|gb|EDZ75896.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206] gi|208735870|gb|EDZ84557.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045] gi|208741536|gb|EDZ89218.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042] gi|209161761|gb|ACI39194.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115] gi|209757358|gb|ACI76991.1| peptide deformylase [Escherichia coli] gi|209757360|gb|ACI76992.1| peptide deformylase [Escherichia coli] gi|209757362|gb|ACI76993.1| peptide deformylase [Escherichia coli] gi|209757366|gb|ACI76995.1| peptide deformylase [Escherichia coli] gi|209914011|dbj|BAG79085.1| polypeptide deformylase [Escherichia coli SE11] gi|215266658|emb|CAS11097.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69] gi|217321336|gb|EEC29760.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588] gi|218353711|emb|CAU99982.1| peptide deformylase [Escherichia coli 55989] gi|218358103|emb|CAQ90750.1| peptide deformylase [Escherichia fergusonii ATCC 35469] gi|218362612|emb|CAR00238.1| peptide deformylase [Escherichia coli IAI1] gi|218367117|emb|CAR04891.1| peptide deformylase [Escherichia coli S88] gi|218429137|emb|CAR10089.2| peptide deformylase [Escherichia coli ED1a] gi|218433991|emb|CAR14908.1| peptide deformylase [Escherichia coli UMN026] gi|222034995|emb|CAP77738.1| Peptide deformylase [Escherichia coli LF82] gi|226838953|gb|EEH70976.1| peptide deformylase [Escherichia sp. 1_1_43] gi|226902280|gb|EEH88539.1| peptide deformylase [Escherichia sp. 3_2_53FAA] gi|227839562|gb|EEJ50028.1| peptide deformylase [Escherichia coli 83972] gi|238861987|gb|ACR63985.1| peptide deformylase [Escherichia coli BW2952] gi|242378813|emb|CAQ33605.1| peptide deformylase [Escherichia coli BL21(DE3)] gi|253322934|gb|ACT27536.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975115|gb|ACT40786.1| peptide deformylase [Escherichia coli B str. REL606] gi|253979271|gb|ACT44941.1| peptide deformylase [Escherichia coli BL21(DE3)] gi|254594623|gb|ACT73984.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359] gi|257761231|dbj|BAI32728.1| peptide deformylase [Escherichia coli O103:H2 str. 12009] gi|260447695|gb|ACX38117.1| peptide deformylase [Escherichia coli DH1] gi|281180321|dbj|BAI56651.1| polypeptide deformylase [Escherichia coli SE15] gi|284923293|emb|CBG36387.1| polypeptide deformylase [Escherichia coli 042] gi|291321731|gb|EFE61162.1| peptide deformylase [Escherichia coli B088] gi|291425695|gb|EFE98729.1| peptide deformylase [Escherichia coli FVEC1412] gi|291431281|gb|EFF04266.1| peptide deformylase [Escherichia coli B185] gi|291468352|gb|EFF10845.1| peptide deformylase [Escherichia coli B354] gi|294491738|gb|ADE90494.1| peptide deformylase [Escherichia coli IHE3034] gi|298276461|gb|EFI17979.1| def [Escherichia coli FVEC1302] gi|299881612|gb|EFI89823.1| peptide deformylase [Escherichia coli MS 196-1] gi|300301942|gb|EFJ58327.1| peptide deformylase [Escherichia coli MS 185-1] gi|300308976|gb|EFJ63496.1| peptide deformylase [Escherichia coli MS 200-1] gi|300359511|gb|EFJ75381.1| peptide deformylase [Escherichia coli MS 198-1] gi|300399513|gb|EFJ83051.1| peptide deformylase [Escherichia coli MS 69-1] gi|300404408|gb|EFJ87946.1| peptide deformylase [Escherichia coli MS 84-1] gi|300409429|gb|EFJ92967.1| peptide deformylase [Escherichia coli MS 45-1] gi|300414522|gb|EFJ97832.1| peptide deformylase [Escherichia coli MS 115-1] gi|300421706|gb|EFK05017.1| peptide deformylase [Escherichia coli MS 182-1] gi|300460063|gb|EFK23556.1| peptide deformylase [Escherichia coli MS 187-1] gi|300532395|gb|EFK53457.1| peptide deformylase [Escherichia coli MS 107-1] gi|300839191|gb|EFK66951.1| peptide deformylase [Escherichia coli MS 124-1] gi|300847980|gb|EFK75740.1| peptide deformylase [Escherichia coli MS 78-1] gi|301077737|gb|EFK92543.1| peptide deformylase [Escherichia coli MS 146-1] gi|305850767|gb|EFM51224.1| peptide deformylase [Escherichia coli NC101] gi|306905484|gb|EFN36019.1| peptide deformylase [Escherichia coli W] gi|307555374|gb|ADN48149.1| peptide deformylase [Escherichia coli ABU 83972] gi|307628321|gb|ADN72625.1| peptide deformylase [Escherichia coli UM146] gi|308121612|gb|EFO58874.1| peptide deformylase [Escherichia coli MS 145-7] gi|309703698|emb|CBJ03039.1| polypeptide deformylase [Escherichia coli ETEC H10407] gi|310334829|gb|EFQ01034.1| peptide deformylase [Escherichia coli 1827-70] gi|312287213|gb|EFR15123.1| peptide deformylase [Escherichia coli 2362-75] gi|312947837|gb|ADR28664.1| peptide deformylase [Escherichia coli O83:H1 str. NRG 857C] gi|315062578|gb|ADT76905.1| peptide deformylase [Escherichia coli W] gi|315137862|dbj|BAJ45021.1| peptide deformylase [Escherichia coli DH1] gi|315255870|gb|EFU35838.1| peptide deformylase [Escherichia coli MS 85-1] gi|315284579|gb|EFU44024.1| peptide deformylase [Escherichia coli MS 110-3] gi|315292338|gb|EFU51690.1| peptide deformylase [Escherichia coli MS 153-1] gi|315297152|gb|EFU56432.1| peptide deformylase [Escherichia coli MS 16-3] gi|315617089|gb|EFU97699.1| peptide deformylase [Escherichia coli 3431] gi|320173931|gb|EFW49107.1| Peptide deformylase [Shigella dysenteriae CDC 74-1112] gi|320182716|gb|EFW57602.1| Peptide deformylase [Shigella boydii ATCC 9905] gi|320187008|gb|EFW61720.1| Peptide deformylase [Shigella flexneri CDC 796-83] gi|320191679|gb|EFW66329.1| Peptide deformylase [Escherichia coli O157:H7 str. EC1212] gi|320195378|gb|EFW70005.1| Peptide deformylase [Escherichia coli WV_060327] gi|320199474|gb|EFW74064.1| Peptide deformylase [Escherichia coli EC4100B] gi|320639591|gb|EFX09185.1| peptide deformylase [Escherichia coli O157:H7 str. G5101] gi|320645089|gb|EFX14105.1| peptide deformylase [Escherichia coli O157:H- str. 493-89] gi|320650400|gb|EFX18866.1| peptide deformylase [Escherichia coli O157:H- str. H 2687] gi|320655925|gb|EFX23845.1| peptide deformylase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320666399|gb|EFX33382.1| peptide deformylase [Escherichia coli O157:H7 str. LSU-61] gi|323162965|gb|EFZ48800.1| peptide deformylase [Escherichia coli E128010] gi|323182765|gb|EFZ68166.1| peptide deformylase [Escherichia coli 1357] gi|323189108|gb|EFZ74392.1| peptide deformylase [Escherichia coli RN587/1] gi|323376835|gb|ADX49103.1| peptide deformylase [Escherichia coli KO11] gi|323934515|gb|EGB30923.1| peptide deformylase [Escherichia coli E1520] gi|323939292|gb|EGB35504.1| peptide deformylase [Escherichia coli E482] gi|323944293|gb|EGB40369.1| peptide deformylase [Escherichia coli H120] gi|323950200|gb|EGB46082.1| peptide deformylase [Escherichia coli H252] gi|323954591|gb|EGB50374.1| peptide deformylase [Escherichia coli H263] gi|323966248|gb|EGB61683.1| peptide deformylase [Escherichia coli M863] gi|323970090|gb|EGB65364.1| peptide deformylase [Escherichia coli TA007] gi|323974761|gb|EGB69874.1| peptide deformylase [Escherichia coli TW10509] gi|324009052|gb|EGB78271.1| peptide deformylase [Escherichia coli MS 57-2] gi|324014963|gb|EGB84182.1| peptide deformylase [Escherichia coli MS 60-1] gi|324111965|gb|EGC05944.1| peptide deformylase [Escherichia fergusonii B253] gi|324116324|gb|EGC10244.1| peptide deformylase [Escherichia coli E1167] gi|326342535|gb|EGD66309.1| Peptide deformylase [Escherichia coli O157:H7 str. 1044] gi|326344522|gb|EGD68271.1| Peptide deformylase [Escherichia coli O157:H7 str. 1125] gi|327250935|gb|EGE62628.1| peptide deformylase [Escherichia coli STEC_7v] gi|330909331|gb|EGH37845.1| peptide deformylase [Escherichia coli AA86] gi|331036276|gb|EGI08502.1| peptide deformylase [Escherichia coli H736] gi|331041581|gb|EGI13725.1| peptide deformylase [Escherichia coli M605] gi|331046894|gb|EGI18972.1| peptide deformylase [Escherichia coli M718] gi|331052792|gb|EGI24825.1| peptide deformylase [Escherichia coli TA206] gi|331057409|gb|EGI29395.1| peptide deformylase [Escherichia coli TA143] gi|331062178|gb|EGI34098.1| peptide deformylase [Escherichia coli TA271] gi|331072527|gb|EGI43852.1| peptide deformylase [Escherichia coli H591] gi|332085435|gb|EGI90601.1| peptide deformylase [Shigella boydii 5216-82] gi|332086260|gb|EGI91416.1| peptide deformylase [Shigella dysenteriae 155-74] gi|332090315|gb|EGI95413.1| peptide deformylase [Shigella boydii 3594-74] gi|332104193|gb|EGJ07539.1| peptide deformylase [Shigella sp. D9] gi|332345234|gb|AEE58568.1| peptide deformylase [Escherichia coli UMNK88] Length = 169 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|161506040|ref|YP_001573152.1| peptide deformylase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189083077|sp|A9MN80|DEF_SALAR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|160867387|gb|ABX24010.1| hypothetical protein SARI_04221 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 169 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + ADG Sbjct: 67 RNERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|91205375|ref|YP_537730.1| peptide deformylase [Rickettsia bellii RML369-C] gi|91068919|gb|ABE04641.1| Polypeptide deformylase [Rickettsia bellii RML369-C] Length = 175 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/166 (43%), Positives = 110/166 (66%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S+ + ++N+ I +D+M+E MY DG GLAAVQ+GVL R++VID++ Sbjct: 5 PIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMVIDIK 64 Query: 65 DHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH K P F +NP+II S++ + EGC+S+P+ R ++ RS I +RY+D + Sbjct: 65 DHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYLDYHN 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q + A+ LA +QHE DHL G L ID+LS +KRD+ +K+ KL Sbjct: 125 KPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRDIALRKLRKL 170 >gi|16272565|ref|NP_438782.1| peptide deformylase [Haemophilus influenzae Rd KW20] gi|260581531|ref|ZP_05849338.1| peptide deformylase [Haemophilus influenzae RdAW] gi|1169264|sp|P44786|DEF_HAEIN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1573618|gb|AAC22282.1| polypeptide deformylase (def) [Haemophilus influenzae Rd KW20] gi|260091805|gb|EEW75761.1| peptide deformylase [Haemophilus influenzae RdAW] Length = 169 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/159 (45%), Positives = 107/159 (67%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ V P+ K+N I ++D+M + MY GIGLAA Q+ +L R++ ID++ Sbjct: 6 VLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + + Sbjct: 65 -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161 >gi|261250604|ref|ZP_05943179.1| peptide deformylase [Vibrio orientalis CIP 102891] gi|260939173|gb|EEX95160.1| peptide deformylase [Vibrio orientalis CIP 102891] Length = 172 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 66 T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALNRDGEEFTFE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|293393278|ref|ZP_06637592.1| peptide deformylase [Serratia odorifera DSM 4582] gi|291424188|gb|EFE97403.1| peptide deformylase [Serratia odorifera DSM 4582] Length = 169 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR+V+ P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRKVAAPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N + AD Sbjct: 67 RDQRLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDYNGNSFELAADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L+ Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKLQ 166 >gi|323173923|gb|EFZ59551.1| peptide deformylase [Escherichia coli LT-68] gi|325498855|gb|EGC96714.1| hypothetical protein ECD227_2952 [Escherichia fergusonii ECD227] Length = 164 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 4 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 61 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 62 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 120 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 121 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161 >gi|71064611|ref|YP_263338.1| peptide deformylase [Psychrobacter arcticus 273-4] gi|123734488|sp|Q4FVQ4|DEF_PSYA2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71037596|gb|AAZ17904.1| peptide deformylase [Psychrobacter arcticus 273-4] Length = 184 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 111/166 (66%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP LR ++ P++++ ++I LI +M+E MY +GIGLAA Q+ +L+V+DL Sbjct: 5 PILSYPDPRLRMIATPVKEVTAEIKTLITDMIETMYDAEGIGLAASQVDHHIQLIVMDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + +P VFINPK+ ++ Y+EGCLS+PD V+R + + +D N Sbjct: 65 ED--KDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEAIDQNGNAIDE 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +GLLA C+QHE+DHLNG++F+D+LSRLK+ K+ K++++R+ Sbjct: 123 EVEGLLAVCIQHEIDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168 >gi|329890845|ref|ZP_08269188.1| peptide deformylase [Brevundimonas diminuta ATCC 11568] gi|328846146|gb|EGF95710.1| peptide deformylase [Brevundimonas diminuta ATCC 11568] Length = 190 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 78/172 (45%), Positives = 105/172 (61%), Gaps = 16/172 (9%) Query: 13 ILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA---- 67 IL+ V+ P+E +D + L+D+MLE MY GIGLAA QIG L R+VV+DL D Sbjct: 17 ILKTVAAPVEGGVTDAVRALMDDMLETMYDAPGIGLAAPQIGELTRVVVMDLGDKPVEGA 76 Query: 68 -----------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 R+NP F+NP+I+ S++ Y+EGCLS+P Y V+R A + VRYM+ Sbjct: 77 SDEPQTEEEALERRNPRFFVNPEILWSSEEMFSYEEGCLSVPTYYDSVERPARVRVRYMN 136 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +GL A C QHELDHLNG+LFIDHLSRL+RD K+ K ++ Sbjct: 137 YQGETIEEEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRAVSKVKKHARM 188 >gi|258545465|ref|ZP_05705699.1| peptide deformylase [Cardiobacterium hominis ATCC 15826] gi|258519298|gb|EEV88157.1| peptide deformylase [Cardiobacterium hominis ATCC 15826] Length = 184 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 104/172 (60%), Gaps = 15/172 (8%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I PD LR+ + P+ + + + + DNM MY GIGLAA Q+ + R+VV+D+ + Sbjct: 6 ILIHPDRRLRKTAEPVSQFTNALKTITDNMFATMYEAHGIGLAATQVNIHQRIVVMDVPE 65 Query: 66 H-------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 H K +V INP+II S++ + +QEGCLS+P ADV+R A I Sbjct: 66 RREDDETETPDAPIPHTK--LVLINPEIIATSEETASWQEGCLSLPGQFADVERPAKIRY 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Y D A+GLL C+QHE+DHLNG+LFIDHLSRLKR+ + KK++K Sbjct: 124 AYYDLGGSRCEGEAEGLLGVCIQHEIDHLNGVLFIDHLSRLKRERLEKKLAK 175 >gi|237728621|ref|ZP_04559102.1| peptide deformylase [Citrobacter sp. 30_2] gi|283835704|ref|ZP_06355445.1| hypothetical protein CIT292_10096 [Citrobacter youngae ATCC 29220] gi|226909243|gb|EEH95161.1| peptide deformylase [Citrobacter sp. 30_2] gi|291068383|gb|EFE06492.1| peptide deformylase [Citrobacter youngae ATCC 29220] Length = 169 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ D + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 RDEQLVLINPELLE-KDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKSFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|322831106|ref|YP_004211133.1| peptide deformylase [Rahnella sp. Y9602] gi|321166307|gb|ADW72006.1| peptide deformylase [Rahnella sp. Y9602] Length = 170 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 FPDERLRITAKPVKEVNAEIQQIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIPD RA V R+ + +R +D + + + AD Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPDQRALVPRAEKVKIRALDRDGKTFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +KM K+ +L Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKMAKL 165 >gi|16766695|ref|NP_462310.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415326|ref|YP_152401.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181912|ref|YP_218329.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616432|ref|YP_001590397.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167554203|ref|ZP_02347944.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167995181|ref|ZP_02576271.1| peptide deformylase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168239761|ref|ZP_02664819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245233|ref|ZP_02670165.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264713|ref|ZP_02686686.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168468037|ref|ZP_02701874.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823236|ref|ZP_02835236.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444564|ref|YP_002042658.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451296|ref|YP_002047431.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734454|ref|YP_002116350.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248664|ref|YP_002148327.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265509|ref|ZP_03165583.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364256|ref|YP_002143893.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245506|ref|YP_002217370.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388386|ref|ZP_03214998.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205354966|ref|YP_002228767.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858648|ref|YP_002245299.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913879|ref|ZP_04657716.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|23396546|sp|Q8ZLM7|DEF_SALTY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|75505525|sp|Q57J64|DEF_SALCH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81677960|sp|Q5PIT8|DEF_SALPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083078|sp|A9N8B1|DEF_SALPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690058|sp|B5F7R3|DEF_SALA4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690317|sp|B5FJI2|DEF_SALDC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690438|sp|B5R1E3|DEF_SALEP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690545|sp|B5RH49|DEF_SALG2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690672|sp|B4TJX7|DEF_SALHS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690738|sp|B5BGV3|DEF_SALPK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238693518|sp|B4SUQ8|DEF_SALNS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238693718|sp|B4TXB0|DEF_SALSV RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|16421962|gb|AAL22269.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129583|gb|AAV79089.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129545|gb|AAX67248.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365796|gb|ABX69564.1| hypothetical protein SPAB_04247 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403227|gb|ACF63449.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409600|gb|ACF69819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709956|gb|ACF89177.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195628902|gb|EDX48312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095733|emb|CAR61303.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212367|gb|ACH49764.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243764|gb|EDY26384.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287582|gb|EDY26974.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940022|gb|ACH77355.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605484|gb|EDZ04029.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205274747|emb|CAR39803.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321541|gb|EDZ09380.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327093|gb|EDZ13857.1| peptide deformylase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205336019|gb|EDZ22783.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340500|gb|EDZ27264.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205346889|gb|EDZ33520.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710451|emb|CAR34809.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248563|emb|CBG26401.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995615|gb|ACY90500.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159949|emb|CBW19468.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914429|dbj|BAJ38403.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087852|emb|CBY97615.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226458|gb|EFX51508.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615053|gb|EFY11977.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617340|gb|EFY14241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625562|gb|EFY22387.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626404|gb|EFY23213.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632084|gb|EFY28837.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635037|gb|EFY31760.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643262|gb|EFY39829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646654|gb|EFY43161.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650000|gb|EFY46419.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652717|gb|EFY49057.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659526|gb|EFY55770.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665532|gb|EFY61719.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670426|gb|EFY66565.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670499|gb|EFY66633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675075|gb|EFY71158.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681612|gb|EFY77641.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685956|gb|EFY81945.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716398|gb|EFZ07969.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131764|gb|ADX19194.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195826|gb|EFZ80999.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196418|gb|EFZ81569.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202703|gb|EFZ87742.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207308|gb|EFZ92258.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211256|gb|EFZ96101.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216035|gb|EGA00766.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223474|gb|EGA07802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226796|gb|EGA10986.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231842|gb|EGA15952.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233205|gb|EGA17300.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237272|gb|EGA21337.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245507|gb|EGA29506.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249013|gb|EGA32935.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250636|gb|EGA34517.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256865|gb|EGA40579.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263014|gb|EGA46561.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266014|gb|EGA49509.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272771|gb|EGA56174.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625151|gb|EGE31496.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630115|gb|EGE36458.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990258|gb|AEF09241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 169 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|283852905|ref|ZP_06370166.1| peptide deformylase [Desulfovibrio sp. FW1012B] gi|283571734|gb|EFC19733.1| peptide deformylase [Desulfovibrio sp. FW1012B] Length = 175 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/159 (45%), Positives = 100/159 (62%), Gaps = 1/159 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P P L + + P+ +I +I L M E MY+ GIGLAA Q+G RLVVIDL Sbjct: 8 YPHPTLAQKAAPVTEITPEIRELAAAMAETMYANQGIGLAAPQVGRSIRLVVIDLSGPDK 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ M +NP +IT +EGCLS+ DYR +V R+A +TV+ D + + ADG Sbjct: 68 REGLMTLVNP-VITDPAGEEEDEEGCLSVRDYRTNVVRAATVTVKATDLDGNPFCLEADG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA CLQHE+DHL+G+LFIDH+SRLKR M K++ + + Sbjct: 127 LLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWAR 165 >gi|320105840|ref|YP_004181430.1| peptide deformylase [Terriglobus saanensis SP1PR4] gi|319924361|gb|ADV81436.1| peptide deformylase [Terriglobus saanensis SP1PR4] Length = 169 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 103/162 (63%), Gaps = 1/162 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPDP+L +V+ P+ + + L+D+M MY+ +GIGLAA QI + R+ +IDL Sbjct: 5 IIKFPDPVLEKVAEPVTLFDDSLKKLVDDMFASMYAAEGIGLAAPQINISRRITIIDLSF 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +V INP++I +EGCLS+PD R V R+A++ VR D +H + Sbjct: 65 QKRPEEKIVLINPEVIAVEGK-QHEEEGCLSLPDIREKVTRAAWVKVRAQDATGKHFEVE 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA QHE+DHLNGILFI +SRLKRD++++++ K+++ Sbjct: 124 GTELLARAFQHEIDHLNGILFISKISRLKRDLVSRRIRKMMK 165 >gi|329118894|ref|ZP_08247589.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200] gi|327464922|gb|EGF11212.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200] Length = 167 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+EKI++ I LI +M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 YPDERLHTVAKPVEKIDARIKTLIADMFETMYEARGIGLAATQVDVHERVVVMDLSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +IT + + Y+EGCLS+P V R+ +TV ++ N + + ADG Sbjct: 67 RNEPRVFINP-VITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALNENGEKFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIRTKLKK 161 >gi|320539229|ref|ZP_08038900.1| peptide deformylase [Serratia symbiotica str. Tucson] gi|320030867|gb|EFW12875.1| peptide deformylase [Serratia symbiotica str. Tucson] Length = 169 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 113/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR+++ P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 FPDDRLRKIAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDISNN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLS+P+ RA V R+A + +R +D + + + AD Sbjct: 67 RDQRLVLINPELLEKSGETGI-EEGCLSLPEQRALVPRAANVKIRALDFDGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|34580779|ref|ZP_00142259.1| polypeptide deformylase [Rickettsia sibirica 246] gi|28262164|gb|EAA25668.1| polypeptide deformylase [Rickettsia sibirica 246] Length = 176 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/166 (43%), Positives = 108/166 (65%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++VID+Q Sbjct: 6 PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIQ 65 Query: 65 DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH A K+ P+ +NP+II +++ EGC+S+P+ R +V R I +RY+D + Sbjct: 66 DHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYLDYHG 125 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 126 KSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 171 >gi|259909966|ref|YP_002650322.1| peptide deformylase [Erwinia pyrifoliae Ep1/96] gi|224965588|emb|CAX57120.1| Peptide deformylase [Erwinia pyrifoliae Ep1/96] gi|283480066|emb|CAY75982.1| peptide deformylase [Erwinia pyrifoliae DSM 12163] gi|310765564|gb|ADP10514.1| peptide deformylase [Erwinia sp. Ejp617] Length = 169 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 110/157 (70%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 FPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNSVELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHL G LFID+LS +KR I +K+ KL Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKL 162 >gi|300822910|ref|ZP_07103046.1| peptide deformylase [Escherichia coli MS 119-7] gi|300524676|gb|EFK45745.1| peptide deformylase [Escherichia coli MS 119-7] Length = 169 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKLKIRALDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|157828155|ref|YP_001494397.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|238650436|ref|YP_002916288.1| peptide deformylase [Rickettsia peacockii str. Rustic] gi|157800636|gb|ABV75889.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|238624534|gb|ACR47240.1| peptide deformylase [Rickettsia peacockii str. Rustic] Length = 175 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/166 (43%), Positives = 108/166 (65%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++VID+Q Sbjct: 5 PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIQ 64 Query: 65 DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH A K+ P+ +NP+II +++ EGC+S+P+ R +V R I +RY+D + Sbjct: 65 DHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYLDYHG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 125 KSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|224585201|ref|YP_002639000.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469729|gb|ACN47559.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 164 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 4 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 61 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + ADG Sbjct: 62 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEADG 120 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 121 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 160 >gi|321472939|gb|EFX83908.1| hypothetical protein DAPPUDRAFT_47755 [Daphnia pulex] Length = 166 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 5/154 (3%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 P P+L R S PI+ I++ I +D+MLE MY++ GIGLAA+Q+G+L R++VIDL + + Sbjct: 10 PSPLLHRTSLPIKTIDATIHKALDDMLETMYASSGIGLAAIQVGLLKRMLVIDLGEASES 69 Query: 70 ----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I+ SD+ + + EGCLS+P + ++ R A I VRY D ++ I+ Sbjct: 70 DTWAGKPLKIINPQILWTSDNQNTFNEGCLSVPQHYVEISRPAEIKVRYQDETGKYHEIH 129 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL-KRDMI 158 A GLLATCLQHE+DHLNGI ++ R+ +RD + Sbjct: 130 AAGLLATCLQHEIDHLNGITILNPPIRISQRDFV 163 >gi|292489813|ref|YP_003532703.1| peptide deformylase [Erwinia amylovora CFBP1430] gi|292900855|ref|YP_003540224.1| polypeptide deformylase [Erwinia amylovora ATCC 49946] gi|291200703|emb|CBJ47836.1| polypeptide deformylase [Erwinia amylovora ATCC 49946] gi|291555250|emb|CBA23521.1| peptide deformylase [Erwinia amylovora CFBP1430] gi|312173996|emb|CBX82249.1| peptide deformylase [Erwinia amylovora ATCC BAA-2158] Length = 169 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/157 (45%), Positives = 109/157 (69%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + ADG Sbjct: 67 RDERLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNSFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHELDHL G LFID+LS +KR I +K+ KL Sbjct: 126 LLAICIQHELDHLVGKLFIDYLSPMKRQRIRQKLEKL 162 >gi|83941567|ref|ZP_00954029.1| peptide deformylase [Sulfitobacter sp. EE-36] gi|83847387|gb|EAP85262.1| peptide deformylase [Sulfitobacter sp. EE-36] Length = 153 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/143 (48%), Positives = 97/143 (67%), Gaps = 1/143 (0%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHAHRKNPMVFINPKIIT 82 + ++ +L D+ML MY GIGLAA QIGV+ RL+V+D +++ P+V NP+II Sbjct: 4 MTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGETPRPLVMFNPEIIA 63 Query: 83 FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 SD + Y+EGCLSIP+ ADV R A + VR++D + Q L ATC+QHE+DHL+ Sbjct: 64 ASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDHLD 123 Query: 143 GILFIDHLSRLKRDMITKKMSKL 165 G LFID+L +KR MIT+KM+KL Sbjct: 124 GKLFIDYLKPMKRQMITRKMTKL 146 >gi|157373176|ref|YP_001471776.1| peptide deformylase [Shewanella sediminis HAW-EB3] gi|157315550|gb|ABV34648.1| Peptide deformylase [Shewanella sediminis HAW-EB3] Length = 170 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/161 (45%), Positives = 100/161 (62%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ + N+D+ IDNM + MY GIGLAA Q+ L+++DLQD Sbjct: 9 FPDERLRTIAKPVAEFNADLQAQIDNMFDTMYEEKGIGLAATQVDFHQHLIIMDLQDDVE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFIN +I T D +EGCLS+P A+V R+ +T++ D + ADG Sbjct: 69 R--PTVFINMEI-TARDGSCTNEEGCLSVPGIYANVDRAESVTIKAFDREGVEFTLDADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 L A CLQHELDHLNG LF+D+LS LKR I +K+ K +L Sbjct: 126 LFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARLE 166 >gi|83855044|ref|ZP_00948574.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] gi|83842887|gb|EAP82054.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] Length = 153 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/143 (48%), Positives = 97/143 (67%), Gaps = 1/143 (0%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHAHRKNPMVFINPKIIT 82 + ++ +L D+ML MY GIGLAA QIGV+ RL+V+D +++ P+V NP+II Sbjct: 4 MTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGEAPRPLVMFNPEIIA 63 Query: 83 FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 SD + Y+EGCLSIP+ ADV R A + VR++D + Q L ATC+QHE+DHL+ Sbjct: 64 ASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDHLD 123 Query: 143 GILFIDHLSRLKRDMITKKMSKL 165 G LFID+L +KR MIT+KM+KL Sbjct: 124 GKLFIDYLKPMKRQMITRKMTKL 146 >gi|171057041|ref|YP_001789390.1| peptide deformylase [Leptothrix cholodnii SP-6] gi|170774486|gb|ACB32625.1| peptide deformylase [Leptothrix cholodnii SP-6] Length = 171 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +++RP+ +++ I L+ +M E MY GIGLAA Q+ V R++VID+ Sbjct: 5 PILRYPDPRLNKIARPVIQVDERIRQLVSDMFETMYEARGIGLAATQVDVHERVIVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R +P+V INP+I+ S++ V EGCLS+P V+R A + V +D N Q Sbjct: 65 EE--RNDPLVLINPRIVAASEEMMVGDEGCLSVPTIYDRVERHAQVQVEALDRNGQRYEF 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLL+ C+QHE+DHL G +F+++LS LKR+ I KM K Sbjct: 123 EADGLLSVCVQHEMDHLLGKVFVEYLSPLKRNRIRSKMIK 162 >gi|226329516|ref|ZP_03805034.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198] gi|225202702|gb|EEG85056.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198] Length = 174 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 110/160 (68%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR +++P+EK++++I ++D+M E MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 YPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVNIHQRIIVIDVSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ + D + +EGCLSIP+ RA + R+ + VR +D N Q + AD Sbjct: 67 RDERLVLINPELLDANGDTGI-EEGCLSIPEQRAFIPRAEHVKVRALDYNGQPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +L Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKL 165 >gi|187732040|ref|YP_001881970.1| peptide deformylase [Shigella boydii CDC 3083-94] gi|238689490|sp|B2U2Q4|DEF_SHIB3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|187429032|gb|ACD08306.1| peptide deformylase [Shigella boydii CDC 3083-94] Length = 169 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP RA V R+ + +R +D + + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPKQRALVPRAEKVKIRALDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|165932853|ref|YP_001649642.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|165907940|gb|ABY72236.1| peptide deformylase [Rickettsia rickettsii str. Iowa] Length = 175 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/166 (42%), Positives = 108/166 (65%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++VID+Q Sbjct: 5 PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIQ 64 Query: 65 DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH A K+ P+ +NP++I +++ EGC+S+P+ R +V R I +RY+D + Sbjct: 65 DHDSVARPKDFYPLFIVNPEVIEKAEELVTANEGCISLPEQRIEVARPESIKIRYLDYHG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 125 KSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|157830814|pdb|1DFF|A Chain A, Peptide Deformylase Length = 164 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 113/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 8 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 66 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L Sbjct: 125 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164 >gi|183600719|ref|ZP_02962212.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827] gi|188019699|gb|EDU57739.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827] Length = 174 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 109/161 (67%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR +++P+EK++++I ++D+M E MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 YPDERLRTIAKPVEKVDAEIQQIVDDMFETMYEEEGIGLAATQVDIHQRIIVIDVSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ V R+ + VR +D N + ADG Sbjct: 67 RDQRLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEHVKVRALDYNGDSFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL ++R Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRMR 166 >gi|157372744|ref|YP_001480733.1| peptide deformylase [Serratia proteamaculans 568] gi|167012065|sp|A8GKG5|DEF_SERP5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157324508|gb|ABV43605.1| peptide deformylase [Serratia proteamaculans 568] Length = 169 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 113/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+V+ P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 YPDDRLRKVAAPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+A + +R +D + + + AD Sbjct: 67 RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAAAVKIRALDRDGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|223041757|ref|ZP_03611950.1| peptide deformylase [Actinobacillus minor 202] gi|240948040|ref|ZP_04752457.1| peptide deformylase [Actinobacillus minor NM305] gi|223017441|gb|EEF15859.1| peptide deformylase [Actinobacillus minor 202] gi|240297656|gb|EER48133.1| peptide deformylase [Actinobacillus minor NM305] Length = 170 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PD L +V P+ ++ ++ ID+M + MY +GIGLAA Q+ VL R++ ID++ Sbjct: 6 VVLYPDENLAKVCEPVAVVDDELNRFIDDMFDTMYEHEGIGLAAPQVDVLKRVITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + N +V INP+II S + + +EGCLSIP +RA V R + V+ ++ + + Sbjct: 65 -GDKTNQVVLINPEIIESSGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRQGEEVVYD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGL A C+QHE+DHLNGILF+DHLS LKR I +KM KL Sbjct: 123 ADGLFAICIQHEIDHLNGILFVDHLSPLKRQRIKEKMVKL 162 >gi|56459130|ref|YP_154411.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR] gi|81678352|sp|Q5QXI5|DEF_IDILO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56178140|gb|AAV80862.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR] Length = 174 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PD LR+V++ IEK++ +I ++ID+M E MY G+GLAA Q+ V RL V Sbjct: 1 MAKMTVLQYPDERLRKVAQKIEKVDDNIRSVIDDMFETMYEEQGVGLAATQVDVHRRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + P+VFINP+I F EGCLS P A V+R+ ITV +D N + Sbjct: 61 SDCSEDQN--EPLVFINPEITEAEGHFK-NDEGCLSFPGVYAKVERAERITVTALDKNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K +L Sbjct: 118 RFSRSAEGLLAICIQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRL 165 >gi|309785609|ref|ZP_07680240.1| peptide deformylase [Shigella dysenteriae 1617] gi|308926729|gb|EFP72205.1| peptide deformylase [Shigella dysenteriae 1617] Length = 169 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEGGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|24114564|ref|NP_709074.1| peptide deformylase [Shigella flexneri 2a str. 301] gi|30064608|ref|NP_838779.1| peptide deformylase [Shigella flexneri 2a str. 2457T] gi|74313805|ref|YP_312224.1| peptide deformylase [Shigella sonnei Ss046] gi|110807134|ref|YP_690654.1| peptide deformylase [Shigella flexneri 5 str. 8401] gi|170680840|ref|YP_001745549.1| peptide deformylase [Escherichia coli SMS-3-5] gi|218702049|ref|YP_002409678.1| peptide deformylase [Escherichia coli IAI39] gi|260857407|ref|YP_003231298.1| peptide deformylase [Escherichia coli O26:H11 str. 11368] gi|260870029|ref|YP_003236431.1| peptide deformylase [Escherichia coli O111:H- str. 11128] gi|300935284|ref|ZP_07150295.1| peptide deformylase [Escherichia coli MS 21-1] gi|331674794|ref|ZP_08375551.1| peptide deformylase [Escherichia coli TA280] gi|331684929|ref|ZP_08385515.1| peptide deformylase [Escherichia coli H299] gi|39930879|sp|Q83PZ1|DEF_SHIFL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122957164|sp|Q0T016|DEF_SHIF8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123773439|sp|Q3YWX3|DEF_SHISS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767584|sp|B7NLK6|DEF_ECO7I RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767588|sp|B1LGP3|DEF_ECOSM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|24053759|gb|AAN44781.1| peptide deformylase [Shigella flexneri 2a str. 301] gi|30042867|gb|AAP18590.1| peptide deformylase [Shigella flexneri 2a str. 2457T] gi|73857282|gb|AAZ89989.1| peptide deformylase [Shigella sonnei Ss046] gi|110616682|gb|ABF05349.1| peptide deformylase [Shigella flexneri 5 str. 8401] gi|170518558|gb|ACB16736.1| peptide deformylase [Escherichia coli SMS-3-5] gi|218372035|emb|CAR19895.1| peptide deformylase [Escherichia coli IAI39] gi|257756056|dbj|BAI27558.1| peptide deformylase [Escherichia coli O26:H11 str. 11368] gi|257766385|dbj|BAI37880.1| peptide deformylase [Escherichia coli O111:H- str. 11128] gi|281602655|gb|ADA75639.1| putative N-formylmethionyl-tRNA deformylase [Shigella flexneri 2002017] gi|300459487|gb|EFK22980.1| peptide deformylase [Escherichia coli MS 21-1] gi|323154124|gb|EFZ40327.1| peptide deformylase [Escherichia coli EPECa14] gi|323164851|gb|EFZ50642.1| peptide deformylase [Shigella sonnei 53G] gi|323179177|gb|EFZ64751.1| peptide deformylase [Escherichia coli 1180] gi|331067703|gb|EGI39101.1| peptide deformylase [Escherichia coli TA280] gi|331077300|gb|EGI48512.1| peptide deformylase [Escherichia coli H299] gi|332749605|gb|EGJ80022.1| peptide deformylase [Shigella flexneri K-671] gi|332753999|gb|EGJ84372.1| peptide deformylase [Shigella flexneri 2747-71] gi|332996761|gb|EGK16386.1| peptide deformylase [Shigella flexneri K-272] gi|332998313|gb|EGK17913.1| peptide deformylase [Shigella flexneri K-218] gi|333012534|gb|EGK31915.1| peptide deformylase [Shigella flexneri K-304] gi|333014514|gb|EGK33862.1| peptide deformylase [Shigella flexneri K-227] Length = 169 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + A+G Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|313648791|gb|EFS13231.1| peptide deformylase [Shigella flexneri 2a str. 2457T] gi|332749748|gb|EGJ80163.1| peptide deformylase [Shigella flexneri 4343-70] gi|332766530|gb|EGJ96737.1| peptide deformylase [Shigella flexneri 2930-71] gi|332998300|gb|EGK17901.1| peptide deformylase [Shigella flexneri VA-6] Length = 164 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 4 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 61 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + A+G Sbjct: 62 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAEG 120 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 121 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161 >gi|197287101|ref|YP_002152973.1| peptide deformylase [Proteus mirabilis HI4320] gi|227354903|ref|ZP_03839317.1| polypeptide deformylase [Proteus mirabilis ATCC 29906] gi|194684588|emb|CAR46445.1| polypeptide deformylase [Proteus mirabilis HI4320] gi|227164985|gb|EEI49824.1| polypeptide deformylase [Proteus mirabilis ATCC 29906] Length = 171 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/161 (44%), Positives = 109/161 (67%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR +++P+EK++++I ++D+M E MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 YPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVDIHQRIIVIDISET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ D + +EGCLSIP+ RA V R+ + VR +D N Q + AD Sbjct: 67 RDQKLVLINPELLDQEGDTGI-EEGCLSIPEQRAFVPRAERVKVRALDYNGQPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + R Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKRR 166 >gi|38639603|ref|NP_943372.1| peptide deformylase [Klebsiella pneumoniae] gi|168998831|ref|YP_001688099.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044] gi|262040714|ref|ZP_06013948.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|38016701|gb|AAR07722.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae] gi|238549851|dbj|BAH66202.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041938|gb|EEW42975.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 169 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/162 (43%), Positives = 114/162 (70%), Gaps = 3/162 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R ++ + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALNRYGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+D Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167 >gi|315635057|ref|ZP_07890338.1| peptide deformylase [Aggregatibacter segnis ATCC 33393] gi|315476319|gb|EFU67070.1| peptide deformylase [Aggregatibacter segnis ATCC 33393] Length = 170 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 109/160 (68%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+P+ L+ V P+ +N D +ID+M + MY +GIGLAA Q+ +L R++ ID++ Sbjct: 6 VLIYPEEHLKVVCDPVLNVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N +V INP+I+ + + +EGCLSIP +RA V R +TV+ +D + + + Sbjct: 65 -GDKQNQLVLINPEILDAEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRDGKEFTLK 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K+ Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLMKV 162 >gi|283788078|ref|YP_003367943.1| polypeptide deformylase [Citrobacter rodentium ICC168] gi|282951532|emb|CBG91231.1| polypeptide deformylase [Citrobacter rodentium ICC168] Length = 169 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ + + +EGCLSIP+ RA V R+ + +R +D + + ADG Sbjct: 67 RDERLVLINPELLEKEGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|299531890|ref|ZP_07045290.1| peptide deformylase [Comamonas testosteroni S44] gi|298720065|gb|EFI61022.1| peptide deformylase [Comamonas testosteroni S44] Length = 170 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 107/160 (66%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P+ +++ I L+ +MLE MY GIGLAA QI V R++VID+ Sbjct: 5 PILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R PM INP+I+ S++ + +EGCLS+P V+RS + V+ +D + + I Sbjct: 65 EK--RNEPMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDESGNSREI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K Sbjct: 123 DAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVK 162 >gi|83404829|ref|YP_424843.1| peptide deformylase [Escherichia coli] gi|157149370|ref|YP_001451409.1| peptide deformylase [Escherichia coli E24377A] gi|298206469|ref|YP_003717571.1| peptide deformylase [Escherichia coli ETEC 1392/75] gi|83308554|emb|CAI79523.1| peptide deformylase [Escherichia coli] gi|157076537|gb|ABV16250.1| peptide deformylase [Escherichia coli E24377A] gi|297374341|emb|CBL93313.1| peptide deformylase [Escherichia coli ETEC 1392/75] Length = 169 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|145631964|ref|ZP_01787717.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae R3021] gi|144982378|gb|EDJ89955.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae R3021] gi|309973885|gb|ADO97086.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2846] Length = 169 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 107/159 (67%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ ID++ Sbjct: 6 VLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + + Sbjct: 65 -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161 >gi|323959563|gb|EGB55216.1| peptide deformylase [Escherichia coli H489] Length = 169 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ + + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 RDERLVLINPELLEKNGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|68249189|ref|YP_248301.1| peptide deformylase [Haemophilus influenzae 86-028NP] gi|145629886|ref|ZP_01785678.1| peptide deformylase [Haemophilus influenzae 22.1-21] gi|145637962|ref|ZP_01793602.1| peptide deformylase [Haemophilus influenzae PittHH] gi|145639368|ref|ZP_01794973.1| peptide deformylase [Haemophilus influenzae PittII] gi|145642285|ref|ZP_01797850.1| peptide deformylase [Haemophilus influenzae R3021] gi|148826745|ref|YP_001291498.1| peptide deformylase [Haemophilus influenzae PittEE] gi|148827778|ref|YP_001292531.1| peptide deformylase [Haemophilus influenzae PittGG] gi|229846679|ref|ZP_04466787.1| peptide deformylase [Haemophilus influenzae 7P49H1] gi|81336405|sp|Q4QMV6|DEF_HAEI8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166198517|sp|A5UEB4|DEF_HAEIE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166198518|sp|A5UH92|DEF_HAEIG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|68057388|gb|AAX87641.1| peptide deformylase [Haemophilus influenzae 86-028NP] gi|144977740|gb|EDJ87687.1| peptide deformylase [Haemophilus influenzae 22.1-21] gi|145268853|gb|EDK08816.1| peptide deformylase [Haemophilus influenzae PittHH] gi|145271415|gb|EDK11327.1| peptide deformylase [Haemophilus influenzae PittII] gi|145273041|gb|EDK12922.1| peptide deformylase [Haemophilus influenzae 22.4-21] gi|148716905|gb|ABQ99115.1| peptide deformylase [Haemophilus influenzae PittEE] gi|148719020|gb|ABR00148.1| hypothetical protein CGSHiGG_06235 [Haemophilus influenzae PittGG] gi|229810772|gb|EEP46490.1| peptide deformylase [Haemophilus influenzae 7P49H1] gi|301169340|emb|CBW28939.1| peptide deformylase [Haemophilus influenzae 10810] gi|309751783|gb|ADO81767.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2866] Length = 169 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 107/159 (67%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ ID++ Sbjct: 6 VLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + + Sbjct: 65 -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161 >gi|145633869|ref|ZP_01789590.1| peptide deformylase [Haemophilus influenzae 3655] gi|145635938|ref|ZP_01791624.1| peptide deformylase [Haemophilus influenzae PittAA] gi|229845579|ref|ZP_04465706.1| peptide deformylase [Haemophilus influenzae 6P18H1] gi|144985241|gb|EDJ92084.1| peptide deformylase [Haemophilus influenzae 3655] gi|145266797|gb|EDK06815.1| peptide deformylase [Haemophilus influenzae PittAA] gi|229811514|gb|EEP47216.1| peptide deformylase [Haemophilus influenzae 6P18H1] Length = 169 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 107/159 (67%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ ID++ Sbjct: 6 VLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + + Sbjct: 65 -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161 >gi|198282168|ref|YP_002218489.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667290|ref|YP_002424533.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246689|gb|ACH82282.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519503|gb|ACK80089.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 167 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 3/162 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD L+ V+RPI +++ I L D+M E MY GIGLAA Q+ +RL+V+D+ ++ Sbjct: 9 IPDARLKDVARPIARVDKQIQQLADDMAETMYDAPGIGLAAPQVAAGHRLIVVDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R + + +NP+II + + + +EGCLS+P V+R+ +TVR + + ADG Sbjct: 67 RNDLLTLLNPEIIARTGEEEM-KEGCLSVPGVLETVRRAEKVTVRATTVQGKTVELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 LLA CLQHE+DHL+G LFIDHLSRLK+ +I +K K V+L D Sbjct: 126 LLAVCLQHEIDHLDGTLFIDHLSRLKQSLIRRKAEKRVRLGD 167 >gi|262040754|ref|ZP_06013985.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041898|gb|EEW42938.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 169 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/161 (44%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ +V INP+++ D + +EGCLSIP+ RA V R+ + +R +D N + + ADG Sbjct: 67 REEQLVLINPEMLE-KDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNDKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|88607030|ref|YP_505871.1| peptide deformylase [Anaplasma phagocytophilum HZ] gi|88598093|gb|ABD43563.1| peptide deformylase [Anaplasma phagocytophilum HZ] Length = 187 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/189 (42%), Positives = 110/189 (58%), Gaps = 24/189 (12%) Query: 1 MVKKPLVIFPDPILRRVSRPI------EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54 M +PLV+ PD L S + EK NS L+++M + MY+ GIGLAAVQ+GV Sbjct: 1 MSVRPLVVLPDSRLFLCSEEVRETDFCEKFNS----LVEDMFDTMYAEQGIGLAAVQVGV 56 Query: 55 LYRLVVIDLQDHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDY 100 R+ VIDL + PMV INP+I+ S D +EGCLS+PD Sbjct: 57 HKRIFVIDLGPKTEESSEIADDPDGYHSTCGPMVVINPEIVEKSVDLVSMEEGCLSVPDQ 116 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R V R I ++Y D + + +I+ A GLL+ CLQHE+DHLNG +F+ H+S+LKRD++ + Sbjct: 117 RELVVRPERIVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNGTVFLKHISKLKRDLVMQ 176 Query: 161 KMSKLVQLR 169 KM K LR Sbjct: 177 KMRKAASLR 185 >gi|319775435|ref|YP_004137923.1| peptide deformylase [Haemophilus influenzae F3047] gi|329122537|ref|ZP_08251120.1| peptide deformylase [Haemophilus aegyptius ATCC 11116] gi|317450026|emb|CBY86240.1| peptide deformylase [Haemophilus influenzae F3047] gi|327473142|gb|EGF18566.1| peptide deformylase [Haemophilus aegyptius ATCC 11116] Length = 169 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 107/159 (67%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ ID++ Sbjct: 6 VLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + + Sbjct: 65 -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLK 161 >gi|311277759|ref|YP_003939990.1| peptide deformylase [Enterobacter cloacae SCF1] gi|308746954|gb|ADO46706.1| peptide deformylase [Enterobacter cloacae SCF1] Length = 169 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 112/161 (69%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V+ P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ + Sbjct: 9 IPDERLRKVAEPVQEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ +V INP++I D + +EGCLS+P+ RA V R+ + VR +D + + + ADG Sbjct: 67 REQQLVLINPELIE-KDGETGIEEGCLSVPEQRALVPRAETVKVRALDRDGKPFELNADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +++ Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMK 166 >gi|251793801|ref|YP_003008533.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700] gi|247535200|gb|ACS98446.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700] Length = 170 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 70/165 (42%), Positives = 112/165 (67%), Gaps = 3/165 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+P+ L+ + P+ ++N D +ID+M + MY +GIGLAA Q+ +L R++ ID++ Sbjct: 6 VLIYPEDHLKVICDPVTEVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N +V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + + Sbjct: 65 -GDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLK 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHE+DHLNGILF+D+LS LKR I +K+ K+ + R+ Sbjct: 123 ADRLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKVKKQRE 167 >gi|270264340|ref|ZP_06192606.1| peptide deformylase [Serratia odorifera 4Rx13] gi|270041476|gb|EFA14574.1| peptide deformylase [Serratia odorifera 4Rx13] Length = 169 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+V+ P++++N+ I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 YPDERLRKVAAPVKEVNATIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+A + +R +D + + + AD Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAANVKIRALDRDGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 126 LLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|238021725|ref|ZP_04602151.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147] gi|237866339|gb|EEP67381.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147] Length = 167 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 104/160 (65%), Gaps = 3/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ P+ L V++P+ +++ I L+ +M E MY++ GIGLAA Q+ V R+VVIDL Sbjct: 5 PILTHPNERLHIVAQPVAQVDERIRTLVQDMAETMYASKGIGLAATQVDVHERVVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + + INP +IT D + Y+EGCLS+P +V R+ ITV ++D Q + Sbjct: 65 EE--KNQLLALINP-VITKKDGETTYEEGCLSVPGIYEEVTRAETITVEFLDIQGNKQTL 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHELDHLNG LF+++LS LK++ I KM K Sbjct: 122 DADGLLAICVQHELDHLNGKLFVEYLSPLKQNRIKTKMKK 161 >gi|254282388|ref|ZP_04957356.1| peptide deformylase [gamma proteobacterium NOR51-B] gi|219678591|gb|EED34940.1| peptide deformylase [gamma proteobacterium NOR51-B] Length = 168 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR ++P+ +++ I LID+MLE MY GIGLAA Q+ V R++VID+ Sbjct: 5 PILEFPDPRLRTRAKPVTEVDQRIRRLIDDMLETMYDAPGIGLAASQVDVHERVIVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +R P VFINP++ Y EGCLS+P + V R + I V +D Sbjct: 65 E--NRDEPRVFINPEVTVIDKTLGSYDEGCLSVPGFFETVNRPSSIEVTALDREGDTFAE 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 DGLLA CLQHE+DHL G LF+D+LS LKR I K+ K Sbjct: 123 ELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRSKLEK 162 >gi|157826975|ref|YP_001496039.1| peptide deformylase [Rickettsia bellii OSU 85-389] gi|157802279|gb|ABV79002.1| peptide deformylase [Rickettsia bellii OSU 85-389] Length = 175 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/166 (42%), Positives = 110/166 (66%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S+ + ++N+ I +D+M+E MY DG GLAAVQ+GVL R++VID++ Sbjct: 5 PIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMVIDIK 64 Query: 65 DHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH K P F +NP+II S++ + EGC+S+P+ R ++ RS I +RY+D + Sbjct: 65 DHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYLDYHN 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q + A+ LA +QHE DHL G L ID+LS +KR++ +K+ KL Sbjct: 125 KPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRNIALRKLRKL 170 >gi|312882739|ref|ZP_07742474.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369597|gb|EFP97114.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] Length = 173 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 105/160 (65%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V+ P+E + +I +D+M+E MY +GIGLAA Q+ R+VVID+ + Sbjct: 6 VLTFPDDRLRTVATPVENVTPEIQKFVDDMIETMYDEEGIGLAATQVDCHKRIVVIDVSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 66 T--RDQPMVLINPEILDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEFTFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLTKI 162 >gi|229586451|ref|YP_002844952.1| peptide deformylase [Rickettsia africae ESF-5] gi|228021501|gb|ACP53209.1| Polypeptide deformylase [Rickettsia africae ESF-5] Length = 175 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/166 (42%), Positives = 108/166 (65%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++VID+Q Sbjct: 5 PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIQ 64 Query: 65 DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH A K+ P+ +NP++I +++ EGC+S+P+ R +V R I +RY+D + Sbjct: 65 DHDSVARPKDFYPLFIVNPEMIEQAEELVTANEGCISLPEQRIEVARPESIKIRYLDYHG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 125 KSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|332533677|ref|ZP_08409536.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505] gi|332036841|gb|EGI73302.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505] Length = 168 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/164 (44%), Positives = 108/164 (65%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR V++ + +++ + ++ +MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MARLEVLRFPDERLRTVAKDVVQVDDTVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+II D +V +EGCLS+P+ A V R+ +TV ++ N + Sbjct: 61 IDVSEE--RNEPLVLINPQIIK-KDGSTVSEEGCLSVPNSYAKVDRAETVTVAALNENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ AD LLA C+QHELDHL G LFID+LS LKR I KK+ K Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEK 161 >gi|329114447|ref|ZP_08243209.1| Peptide deformylase [Acetobacter pomorum DM001] gi|326696523|gb|EGE48202.1| Peptide deformylase [Acetobacter pomorum DM001] Length = 275 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 72/163 (44%), Positives = 111/163 (68%), Gaps = 4/163 (2%) Query: 5 PLVIF--PDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 PL I P P+LR+ +R ++ + +DI ++ NM MY GIGLAA Q+G+ R +++ Sbjct: 109 PLQILTPPHPVLRQKARLVKPEDVADIRKILPNMFSAMYQAPGIGLAAPQVGLSQRFLLV 168 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + R +P+V INP++I ++D +V +EGCLS+P+ A+V R I VR+ + N Sbjct: 169 DLGEKDAR-DPIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNINGDV 227 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K Sbjct: 228 VEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAK 270 >gi|258541770|ref|YP_003187203.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256632848|dbj|BAH98823.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256635905|dbj|BAI01874.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-03] gi|256638960|dbj|BAI04922.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-07] gi|256642014|dbj|BAI07969.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-22] gi|256645069|dbj|BAI11017.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-26] gi|256648124|dbj|BAI14065.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-32] gi|256651177|dbj|BAI17111.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654168|dbj|BAI20095.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-12] Length = 186 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/163 (43%), Positives = 111/163 (68%), Gaps = 4/163 (2%) Query: 5 PLVIF--PDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 PL I P P+LR+ +R ++ + ++I ++ NM MY GIGLAA Q+G+ R +++ Sbjct: 20 PLQILTPPHPVLRQKARLVKPEDVAEIRKILPNMFSAMYQAPGIGLAAPQVGLSQRFILV 79 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + R +P+V INP++I ++D +V +EGCLS+P+ A+V R I VR+ + N Sbjct: 80 DLGEKDAR-DPIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNVNGDV 138 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K Sbjct: 139 VEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAK 181 >gi|117620047|ref|YP_854786.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561454|gb|ABK38402.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 170 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 109/159 (68%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V+ P+E ++ +++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 FPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R++P+V INP+II + + +EGCLS+P RA V R+ ++ VR +D + + + AD Sbjct: 67 REDPLVLINPEIIEQAGSTGI-EEGCLSVPGSRALVPRAEWVKVRALDRHGKAFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ + Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAR 164 >gi|271502213|ref|YP_003335239.1| peptide deformylase [Dickeya dadantii Ech586] gi|270345768|gb|ACZ78533.1| peptide deformylase [Dickeya dadantii Ech586] Length = 169 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 70/159 (44%), Positives = 108/159 (67%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++P++++N++I ++D+M + MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRTQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S D + +EGCLSIP+ RA V R+ + VR +D + + ADG Sbjct: 67 RDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKPFELDADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAR 164 >gi|260599606|ref|YP_003212177.1| peptide deformylase [Cronobacter turicensis z3032] gi|260218783|emb|CBA34131.1| Peptide deformylase [Cronobacter turicensis z3032] Length = 177 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PD LR V+ P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++VID+ ++ R Sbjct: 16 PDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSEN--R 73 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N + + ADGL Sbjct: 74 DERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRNGKSFELEADGL 132 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA C+QHE+DHL G LFID+LS +KR I +K+ KL +++ Sbjct: 133 LAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 172 >gi|291619142|ref|YP_003521884.1| Def [Pantoea ananatis LMG 20103] gi|291154172|gb|ADD78756.1| Def [Pantoea ananatis LMG 20103] gi|327395471|dbj|BAK12893.1| peptide deformylase Def [Pantoea ananatis AJ13355] Length = 170 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 108/159 (67%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR+++ P++++N+D+ ++D+M E MYS +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 FPDERLRKIAAPVKEVNADVQRIVDDMFETMYSEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + VR +D + + Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDREGKSFELETGD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL+G LFID+LS LKR I K+ KL + Sbjct: 126 LLAICIQHEIDHLDGKLFIDYLSPLKRQRIKTKLEKLAR 164 >gi|289209433|ref|YP_003461499.1| peptide deformylase [Thioalkalivibrio sp. K90mix] gi|288945064|gb|ADC72763.1| peptide deformylase [Thioalkalivibrio sp. K90mix] Length = 177 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 74/164 (45%), Positives = 107/164 (65%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ FPDP LR + P+E ++ +I L+D+MLE MY GIGLAA QI V R++V Sbjct: 1 MAKREILHFPDPRLRLKAEPVETVDDEIRTLVDDMLETMYDAPGIGLAATQINVQKRVLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D + P V INP+I+ S + + EGCLS+P + V+R+ I VR + + + Sbjct: 61 ADVSDD--QSEPHVLINPEILETSGEEEM-DEGCLSVPGFYEKVQRADRIRVRALGRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K Sbjct: 118 PFELDIDGLLAVCIQHEIDHLDGKLFVDYLSSLKRNRIRKKLEK 161 >gi|242237892|ref|YP_002986073.1| peptide deformylase [Dickeya dadantii Ech703] gi|242129949|gb|ACS84251.1| peptide deformylase [Dickeya dadantii Ech703] Length = 170 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 69/157 (43%), Positives = 108/157 (68%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRITAKPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVNIHQRIIVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S D + +EGCLSIP+ RA V R+ + +R +D + + + DG Sbjct: 67 RDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAERVKIRALDKDGKPFELETDG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKL 162 >gi|37521797|ref|NP_925174.1| peptide deformylase [Gloeobacter violaceus PCC 7421] gi|39930959|sp|Q7NIF5|DEF2_GLOVI RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|35212795|dbj|BAC90169.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421] Length = 187 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 70/153 (45%), Positives = 96/153 (62%), Gaps = 2/153 (1%) Query: 1 MVKKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + K PL I D +LR+ S+ I IN ++ L ML+ MYS DGIGLAA Q+GV R+ Sbjct: 12 LAKPPLAIHTLGDRVLRQGSKQISGINDEVRKLAQQMLQTMYSADGIGLAAPQVGVNKRM 71 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+D+ + P+V INP I FS D +V QEGCLS+P ADV+R + Y D N Sbjct: 72 IVVDIDPENAARPPLVLINPLIKQFSSDLAVDQEGCLSVPSIYADVRRPERVVATYRDLN 131 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + A GLLA C+QHE+DHL+G+LF+D + Sbjct: 132 GRPVTLEATGLLARCIQHEIDHLDGVLFVDRVE 164 >gi|330827125|ref|YP_004390428.1| peptide deformylase [Alicycliphilus denitrificans K601] gi|329312497|gb|AEB86912.1| Peptide deformylase [Alicycliphilus denitrificans K601] Length = 171 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 106/160 (66%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P+ ++ + ++D+ML MY +GIGLAA Q+ V R+VVID+ Sbjct: 5 PILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P+V INP+I S + + +EGCLS+P V+RS + R +D + Q + I Sbjct: 65 EE--RDQPLVLINPEITWASPEMRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQPRTI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K Sbjct: 123 EAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLK 162 >gi|251788004|ref|YP_003002725.1| peptide deformylase [Dickeya zeae Ech1591] gi|247536625|gb|ACT05246.1| peptide deformylase [Dickeya zeae Ech1591] Length = 169 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 70/159 (44%), Positives = 108/159 (67%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++P++++N++I ++D+M + MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRIQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S D + +EGCLSIP+ RA V R+ + VR +D + + ADG Sbjct: 67 RDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLAR 164 >gi|168234463|ref|ZP_02659521.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472649|ref|ZP_03078633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194459013|gb|EDX47852.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331619|gb|EDZ18383.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 169 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + A+G Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEANG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|149190435|ref|ZP_01868706.1| peptide deformylase [Vibrio shilonii AK1] gi|148835689|gb|EDL52655.1| peptide deformylase [Vibrio shilonii AK1] Length = 169 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 105/160 (65%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E + +I ++D+M+E MY +GIGLAA Q+ R+VVID+ D Sbjct: 6 VLTFPDDRLRTVAKPVEAVTPEIQKVVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I + + +EGCLS+P RA V R+A ++V+ ++ + + Sbjct: 66 T--RDQPMVLINPEITEKRGEDGI-EEGCLSVPGARALVPRAAEVSVKALNRDGEEFTFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K+ K+ Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKDKLEKI 162 >gi|302341791|ref|YP_003806320.1| peptide deformylase [Desulfarculus baarsii DSM 2075] gi|301638404|gb|ADK83726.1| peptide deformylase [Desulfarculus baarsii DSM 2075] Length = 170 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 1/153 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ +PDP+L I++++ ++ L +M++ MY G+GLAA Q+G R+VV+D Sbjct: 5 PICKYPDPVLAEKCAEIDRVDDELRRLAQDMIDTMYDAPGVGLAAPQVGRAIRMVVVDTA 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R PMV INP+++ V+ E CLS+PDYRADV R++ + V D I Sbjct: 65 EDDKRGTPMVLINPRVVAKRGQL-VWDEACLSVPDYRADVVRASEVVVEAGDLEGNDLRI 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 A+GL A CLQHE+DHL+G+LF+DH+S LKR M Sbjct: 124 EAEGLTAVCLQHEIDHLDGVLFLDHISSLKRAM 156 >gi|149910328|ref|ZP_01898971.1| peptide deformylase [Moritella sp. PE36] gi|149806576|gb|EDM66544.1| peptide deformylase [Moritella sp. PE36] Length = 167 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 73/159 (45%), Positives = 107/159 (67%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD L+++++P+++I +ID+MLE MY+ +GIGLAAVQ+ +L R+VVID+ Sbjct: 9 FPDDRLKKIAQPVQEITPATQIIIDDMLETMYAEEGIGLAAVQVNILQRIVVIDVS--GT 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P++ INP ++T + +EGCLS+P+ RA V R+ +TV +D + + A Sbjct: 67 RGEPLILINP-VLTNKCGETGIEEGCLSVPESRAFVPRAESVTVTALDRDGNEFTLEAHD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA CLQHE+DHLNG LFID+LS LK+ I KK+ KL + Sbjct: 126 LLAICLQHEVDHLNGKLFIDYLSPLKQQRIRKKLEKLAR 164 >gi|297183538|gb|ADI19667.1| N-formylmethionyl-tRNA deformylase [uncultured Alteromonadales bacterium HF4000_16C08] Length = 169 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++P+E++N +I L+ +M E M +GIGLAA Q+ ++VV+D+ + Sbjct: 9 FPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVVMDVSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+I T D ++ +EGCLS+P A V+R+ ITV+ ++ + + A+G Sbjct: 67 QNEPRVFINPEI-TRKDGSTISEEGCLSVPGNYAKVERAEAITVKALNEEGEAFELDAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 126 LLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKDARL 165 >gi|254497986|ref|ZP_05110749.1| peptide deformylase [Legionella drancourtii LLAP12] gi|254352763|gb|EET11535.1| peptide deformylase [Legionella drancourtii LLAP12] Length = 171 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 103/160 (64%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ PDP LR +S+P+ + + LID+M E MY G+GLAA QIGV RL VID+ Sbjct: 6 ILYLPDPRLRELSKPVVTFDDTLQTLIDDMFETMYDAHGVGLAAAQIGVSLRLSVIDIL- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +KN +V INP+II S+ S + EGCLS+P V R+ +TV+ +D + + I Sbjct: 65 -GDKKNQIVIINPEIIA-SEGESKFDEGCLSVPGAYDTVTRAEKVTVKALDRHGKPFEIK 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A+GLLA CLQHE+DH+NG LFID LS LK+ M KK+ K Sbjct: 123 AEGLLAECLQHEIDHMNGKLFIDMLSPLKKAMARKKLDKF 162 >gi|15892201|ref|NP_359915.1| peptide deformylase [Rickettsia conorii str. Malish 7] gi|20137640|sp|Q92IZ1|DEF1_RICCN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|15619334|gb|AAL02816.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] Length = 175 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 71/166 (42%), Positives = 108/166 (65%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++VID+Q Sbjct: 5 PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIQ 64 Query: 65 DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH A K+ P+ +NP+II +++ EGC+S+P+ R +V R I +RY+D + Sbjct: 65 DHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYLDYHG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 125 KSRELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|317049806|ref|YP_004117454.1| peptide deformylase [Pantoea sp. At-9b] gi|316951423|gb|ADU70898.1| peptide deformylase [Pantoea sp. At-9b] Length = 170 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 108/159 (67%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR+++ P++ +++ + ++D+M E MY+ +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDDRLRKIAAPVKTVDAGVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ +V INP+++ + + +EGCLSIP+ RA V R+ ++ VR D + + DG Sbjct: 67 REERLVLINPELLEKGGETGI-EEGCLSIPEQRAFVPRAEWVKVRAQDRDGNSFELETDG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL+G LFID+LS LKR I +K+ KL + Sbjct: 126 LLAICIQHEIDHLDGKLFIDYLSPLKRQRIKQKLEKLAR 164 >gi|78224529|ref|YP_386276.1| peptide deformylase [Geobacter metallireducens GS-15] gi|78195784|gb|ABB33551.1| peptide deformylase [Geobacter metallireducens GS-15] Length = 167 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 68/164 (41%), Positives = 104/164 (63%), Gaps = 1/164 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +P+PIL++ + P+ IN L+ +M E MY G+GLAA QIGV R++VID+ Sbjct: 3 RTILTYPNPILKKKAVPVAVINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVIDV 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 R +V INP + ++ S +EGCLS+P Y A+V R A + V+ ++ + + Sbjct: 63 SQREERPELIVCINP-VFVHTEGESYEEEGCLSVPKYSANVHRHAKVVVKALNLDGEEVT 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+GLLA QHE+DHL G+LF+DHLS LKR+M KK ++V+ Sbjct: 122 YRAEGLLAIAFQHEIDHLEGMLFVDHLSPLKREMFKKKYRRMVE 165 >gi|57238784|ref|YP_179920.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden] gi|58578709|ref|YP_196921.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden] gi|58616771|ref|YP_195970.1| peptide deformylase [Ehrlichia ruminantium str. Gardel] gi|57160863|emb|CAH57765.1| putative peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] gi|58416383|emb|CAI27496.1| Peptide deformylase [Ehrlichia ruminantium str. Gardel] gi|58417335|emb|CAI26539.1| Peptide deformylase [Ehrlichia ruminantium str. Welgevonden] Length = 181 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 75/171 (43%), Positives = 105/171 (61%), Gaps = 12/171 (7%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV----I 61 LV PD L S + ++ +I L+D+M EVM++ +GIGLAAVQ+G+ R+ V + Sbjct: 6 LVTIPDHRLSLCSEEVTEVTQEIKKLVDDMFEVMHTNNGIGLAAVQVGIHKRIFVADVPV 65 Query: 62 DLQDHAHRK--------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D +DH K P INPKI+ S + QEGCLS+PD V R ++T++ Sbjct: 66 DYKDHETIKTDGYKSHGGPYCMINPKIVDMSQEKVKMQEGCLSVPDCLEYVMRPKYVTMQ 125 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Y+D N II A G LA CL+HELDHLNGI+F+ +LS+ KRD+I +K+ K Sbjct: 126 YLDYNGNKCIIKAQGWLARCLEHELDHLNGIVFLKYLSKFKRDLIVEKIRK 176 >gi|301064006|ref|ZP_07204471.1| peptide deformylase [delta proteobacterium NaphS2] gi|300441917|gb|EFK06217.1| peptide deformylase [delta proteobacterium NaphS2] Length = 171 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 65/144 (45%), Positives = 96/144 (66%), Gaps = 1/144 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P+P+L++ + P++ I+ ++ +ID MLE MY+ GIGLAA Q+GVL R++V D Sbjct: 9 YPEPVLKKNAEPVKNIDEELQEIIDQMLETMYAAPGIGLAANQVGVLKRVIVFDGSPREE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 NP + INP+I+ + E CLS+PD+ A+V R+A I V+ +D N + + A Sbjct: 69 GANPQILINPEIVAAEGSIK-WDEACLSVPDFTAEVNRNANIQVKGLDRNGKPLELEAKD 127 Query: 129 LLATCLQHELDHLNGILFIDHLSR 152 LLA CLQHE+DHL+GILFID +SR Sbjct: 128 LLAVCLQHEIDHLDGILFIDRISR 151 >gi|121596335|ref|YP_988231.1| peptide deformylase [Acidovorax sp. JS42] gi|222112559|ref|YP_002554823.1| peptide deformylase [Acidovorax ebreus TPSY] gi|120608415|gb|ABM44155.1| peptide deformylase [Acidovorax sp. JS42] gi|221732003|gb|ACM34823.1| peptide deformylase [Acidovorax ebreus TPSY] Length = 170 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P+ ++ + ++D+M MY GIGLAA Q+ V R+VVID+ Sbjct: 5 PILCYPDPRLHKVAQPVTAVDERVRAIVDDMFATMYDAHGIGLAATQVDVHERIVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P+V INP+I S + V EGCLS+P V+RS + VR +D + Q ++I Sbjct: 65 EE--RDTPLVLINPEITWASAEKQVGDEGCLSVPGIYDGVERSTAVHVRALDRDGQPRVI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K Sbjct: 123 EAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLK 162 >gi|294141147|ref|YP_003557125.1| polypeptide deformylase [Shewanella violacea DSS12] gi|293327616|dbj|BAJ02347.1| polypeptide deformylase [Shewanella violacea DSS12] Length = 163 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/162 (46%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R +R +E I+S + ID++LE +Y T DGIGLAA Q+G + ++VIDL Sbjct: 6 ILTIPDERLKRKARTVEDIDS-VQGFIDDLLETLYDTEDGIGLAATQVGSEHAILVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P V INP+I+ DF + +EGCLSIP YRA V RS +TV+ +D + I Sbjct: 65 EE--RDQPQVLINPEIVATQGDF-IGEEGCLSIPGYRAKVARSEQVTVKALDRTGKPFEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 D LA LQHE+DHL GI+F DHLS+LK+ + KK+ K V Sbjct: 122 ETDTFLAIVLQHEMDHLQGIVFTDHLSKLKQQIALKKVKKYV 163 >gi|152972195|ref|YP_001337341.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896783|ref|YP_002921528.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044] gi|330002243|ref|ZP_08304254.1| peptide deformylase [Klebsiella sp. MS 92-3] gi|166198519|sp|A6TEU0|DEF_KLEP7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|150957044|gb|ABR79074.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549110|dbj|BAH65461.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537382|gb|EGF63631.1| peptide deformylase [Klebsiella sp. MS 92-3] Length = 169 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ +V INP+++ D + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 REEQLVLINPEMLE-KDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|319764921|ref|YP_004128858.1| peptide deformylase [Alicycliphilus denitrificans BC] gi|317119482|gb|ADV01971.1| peptide deformylase [Alicycliphilus denitrificans BC] Length = 171 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 106/160 (66%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P+ ++ + ++D+ML MY +GIGLAA Q+ V R+VVID+ Sbjct: 5 PILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P+V INP+I S + + +EGCLS+P V+RS + R +D + Q + I Sbjct: 65 EE--RDQPLVLINPEITWASPETRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQPRTI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K Sbjct: 123 EAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLK 162 >gi|294638020|ref|ZP_06716280.1| peptide deformylase [Edwardsiella tarda ATCC 23685] gi|291088812|gb|EFE21373.1| peptide deformylase [Edwardsiella tarda ATCC 23685] Length = 171 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 69/157 (43%), Positives = 107/157 (68%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ +I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 FPDERLRTIAKPVNEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDISEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ + + +EGCLS+P+ RA V R+ ITVR +D + + + DG Sbjct: 67 RDQRLVLINPELLQKGGETGI-EEGCLSVPEQRALVPRAETITVRALDRDGKPFELETDG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHL G LFID+LS LKR I +K+ KL Sbjct: 126 LLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKL 162 >gi|206580091|ref|YP_002236311.1| peptide deformylase [Klebsiella pneumoniae 342] gi|288933300|ref|YP_003437359.1| peptide deformylase [Klebsiella variicola At-22] gi|290512102|ref|ZP_06551470.1| peptide deformylase [Klebsiella sp. 1_1_55] gi|238058213|sp|B5XNC4|DEF_KLEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|206569149|gb|ACI10925.1| peptide deformylase [Klebsiella pneumoniae 342] gi|288888029|gb|ADC56347.1| peptide deformylase [Klebsiella variicola At-22] gi|289775892|gb|EFD83892.1| peptide deformylase [Klebsiella sp. 1_1_55] Length = 169 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ +V INP+++ D + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 REERLVLINPELLE-KDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|119471681|ref|ZP_01614066.1| N-terminal methionine peptide deformylase [Alteromonadales bacterium TW-7] gi|119445460|gb|EAW26747.1| N-terminal methionine peptide deformylase [Alteromonadales bacterium TW-7] Length = 168 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 71/164 (43%), Positives = 107/164 (65%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR +++ + ++ + ++ +MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MARLEVLRFPDERLRTIAKDVADVDDQVRQIVKDMLETMYDENGIGLAATQVNIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+II D ++ +EGCLS+P+ A V R+ +TV ++ N + Sbjct: 61 IDVSEE--RDEPLVLINPQIIK-KDGSTISEEGCLSVPNSYAKVDRAETVTVAALNENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ AD LLA C+QHELDHL G LFID+LS LKR I KK+ K Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEK 161 >gi|194439835|ref|ZP_03071900.1| peptide deformylase [Escherichia coli 101-1] gi|194421225|gb|EDX37247.1| peptide deformylase [Escherichia coli 101-1] gi|323974492|gb|EGB69619.1| peptide deformylase [Escherichia coli TW10509] Length = 169 Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + A+G Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|222054052|ref|YP_002536414.1| peptide deformylase [Geobacter sp. FRC-32] gi|221563341|gb|ACM19313.1| peptide deformylase [Geobacter sp. FRC-32] Length = 171 Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 72/167 (43%), Positives = 107/167 (64%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+KK ++ FPDP L++ +P+ IN + L+ +M E MY G+GLAA QIGV R+VV Sbjct: 1 MIKK-ILTFPDPELKKKCQPVTVINDKVRELVRDMAETMYDAPGVGLAAPQIGVHQRVVV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +V INP +I +D + +EGCLSIP Y A+V+R + V+ ++ + Sbjct: 60 IDVTGKDEQPQLLVAINP-VIVHADGEAYEEEGCLSIPKYAANVRRHERVVVKALNLEGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLA QHE+DHL+GILFIDH+S LKR++ +K + ++ Sbjct: 119 EVTFKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRRTME 165 >gi|319897841|ref|YP_004136038.1| peptide deformylase [Haemophilus influenzae F3031] gi|317433347|emb|CBY81725.1| peptide deformylase [Haemophilus influenzae F3031] Length = 169 Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 70/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ ID++ Sbjct: 6 VLIYPDDHLKVACEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + + Sbjct: 65 -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLK 161 >gi|307132806|ref|YP_003884822.1| peptide deformylase [Dickeya dadantii 3937] gi|306530335|gb|ADN00266.1| peptide deformylase [Dickeya dadantii 3937] Length = 169 Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 70/159 (44%), Positives = 109/159 (68%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++P++++N++I ++D+M + MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRIKAQPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S D + +EGCLSIP+ RA V R+ ++VR +D + + A+G Sbjct: 67 RDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAERVSVRALDREGKPFELEAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAR 164 >gi|77917861|ref|YP_355676.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380] gi|77543944|gb|ABA87506.1| peptide deformylase [Pelobacter carbinolicus DSM 2380] Length = 171 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 74/163 (45%), Positives = 104/163 (63%), Gaps = 6/163 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ +PDP+L+ S PI I +I L +M E MY+ G+GLAA Q+G+ +LVV+D Sbjct: 5 PIRHYPDPVLKNKSEPILTITEEIKTLAADMAETMYAAPGVGLAAPQVGINKKLVVMDC- 63 Query: 65 DHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A ++NP +V INP+II D S +EGCLS+P Y +KR++ + VRY + Q Sbjct: 64 --APKENPELIVAINPEIIEREGD-SFEEEGCLSVPGYYCRIKRNSHVKVRYQNLEGQTV 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A GLLA QHE+DHL+G+LF+DHLS LK++M KK K+ Sbjct: 121 EREATGLLAIAFQHEIDHLHGLLFVDHLSSLKKNMFRKKYQKI 163 >gi|56417231|ref|YP_154305.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. St. Maries] gi|222475595|ref|YP_002564012.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Florida] gi|254995399|ref|ZP_05277589.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Mississippi] gi|255003586|ref|ZP_05278550.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Puerto Rico] gi|255004717|ref|ZP_05279518.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Virginia] gi|56388463|gb|AAV87050.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. St. Maries] gi|222419733|gb|ACM49756.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Florida] Length = 185 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 17/177 (9%) Query: 5 PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL+ PD L S + + L +NMLE MY GIGLAAVQ+GV R+ V+D Sbjct: 5 PLLTLPDSRLSLCSEEVHAADFGPQLETLTNNMLETMYHNKGIGLAAVQVGVHKRICVVD 64 Query: 63 LQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 L+ + R P+V +NP ++ S+ + +EGCLS+P YR V+R Sbjct: 65 LEYGSDRYEIPEDDGVGEYRATCGPVVILNPIVVEESEQLATMEEGCLSVPGYRETVQRP 124 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I V+Y D N Q + I A GLLA CLQHELDHLNG++F+ +S+LKRDM+ +K+ K Sbjct: 125 ERIVVQYTDLNRQTKYIKACGLLARCLQHELDHLNGVVFLQRVSKLKRDMVMEKIRK 181 >gi|254784305|ref|YP_003071733.1| peptide deformylase [Teredinibacter turnerae T7901] gi|259645186|sp|C5BKQ0|DEF_TERTT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|237684580|gb|ACR11844.1| peptide deformylase [Teredinibacter turnerae T7901] Length = 168 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 105/160 (65%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPD LR V++P+E+++ + +ID+M E MY GIGLAA Q+ V +++VID+ Sbjct: 5 PILEFPDARLRTVAKPVEQVDERVRAIIDDMFETMYDAPGIGLAATQVNVHEQIIVIDIS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ P+VFINP+I + Y+EGCLS+P + +V R + V ++ + + ++ Sbjct: 65 EN--HDEPLVFINPRIDVLDETLFDYEEGCLSVPGFYEEVTRPRHVRVTALNRDGEEFVL 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +GLLA C+QHE+DHL G LF+D++S +KR I KK+ K Sbjct: 123 EPEGLLAVCIQHEIDHLKGKLFVDYVSNIKRQRIRKKLEK 162 >gi|288941787|ref|YP_003444027.1| peptide deformylase [Allochromatium vinosum DSM 180] gi|288897159|gb|ADC62995.1| peptide deformylase [Allochromatium vinosum DSM 180] Length = 185 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 70/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPDP LR+ +RP+E+++ I L+D+MLE MY+ GIGLAA Q+ V +++VID+ + Sbjct: 6 ILTFPDPRLRQKARPVEQVDDQIRRLVDDMLETMYAAPGIGLAATQVDVQRQIIVIDVSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H P+ FINP+++ + EGCLS+P + V R+ +TV +D + + + Sbjct: 66 -GH-DTPLCFINPRLVA-REGTEQMDEGCLSVPGFFETVTRAERVTVEALDRDGKPFKLD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHL+G LF+DH+S LKR I K+ K Sbjct: 123 ADGLLAVCIQHEMDHLDGKLFVDHISILKRQRIRHKLEK 161 >gi|15603424|ref|NP_246498.1| peptide deformylase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431442|sp|P57948|DEF_PASMU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|12721951|gb|AAK03643.1| Def [Pasteurella multocida subsp. multocida str. Pm70] Length = 170 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 111/165 (67%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++++PD L+ +++P+ ++N +I ++DNM E MY +GIGLAA Q+ + R++ Sbjct: 1 MARLNVLVYPDERLKIIAKPVVEVNDEIREIVDNMFETMYLEEGIGLAATQVNIHQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N V INP+II + + +EGCLS+P +R V R +T++ +D + + Sbjct: 61 IDVE--GTKENQYVLINPEIIDSCGETGI-EEGCLSLPGFRGFVPRKEKVTIKALDRHGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + A+GLLA C+QHE+DHLNGI+F D+LS LKR + +K+ KL Sbjct: 118 EYTLSAEGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLLKL 162 >gi|95928563|ref|ZP_01311310.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] gi|95135353|gb|EAT17005.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] Length = 171 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 71/161 (44%), Positives = 104/161 (64%), Gaps = 6/161 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD +L +S PI ++ +I L +M E MY+ G+GLAA Q+G+ RL+V+D Sbjct: 9 YPDAVLAEMSEPIAVVDDEIRQLAADMAETMYAAPGVGLAAPQVGISRRLIVLDC---GG 65 Query: 69 RKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 +NP + +NP+I+ D S +EGCLS+P Y A VKRS+++ VRY+D + Q A Sbjct: 66 EENPELIKAVNPEILERQGD-SCEEEGCLSVPGYYAAVKRSSWVKVRYVDMDGQTVEREA 124 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +GLLA C QHE+DHL+G LF+D LS LK+ M KK K+++ Sbjct: 125 EGLLAICFQHEIDHLDGKLFVDRLSSLKKGMFRKKYPKILE 165 >gi|254483306|ref|ZP_05096537.1| peptide deformylase [marine gamma proteobacterium HTCC2148] gi|214036401|gb|EEB77077.1| peptide deformylase [marine gamma proteobacterium HTCC2148] Length = 168 Score = 143 bits (360), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR V+ P+ + L+D+MLE MY+ GIGLAA Q+ V R++VIDL + Sbjct: 9 FPDPRLRTVAAPVNSVTDKHRQLLDDMLETMYAAPGIGLAATQVNVHERILVIDLSEK-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + +P+VFINP++ + Y EGCLS+P Y V R I V+ + + + +G Sbjct: 67 QNDPLVFINPEVEILDKELGEYDEGCLSVPGYYETVNRPQRIAVKALGRDGKPFSSEIEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K Sbjct: 127 LLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEK 162 >gi|88801027|ref|ZP_01116576.1| peptide deformylase [Reinekea sp. MED297] gi|88776230|gb|EAR07456.1| peptide deformylase [Reinekea sp. MED297] Length = 169 Score = 143 bits (360), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 100/156 (64%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR V++PIEK++ +I L D+MLE MY GIGLAA Q+ RL+V+D+ + Sbjct: 9 FPDPRLRTVAKPIEKVDGEIQKLADDMLETMYDAPGIGLAASQVDRHIRLIVVDVSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + +P + INP+ +D YQEGCLS+P Y V RS I+VR ++ + A Sbjct: 67 QNDPHILINPEYDRLGEDIE-YQEGCLSVPGYYEKVSRSDRISVRALNRDGDAIEFEATD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L A C+QHE+DHL+G LF+D+LS LKR I KK+ K Sbjct: 126 LFAICIQHEIDHLDGKLFVDYLSNLKRTRIRKKLEK 161 >gi|22127893|ref|NP_671316.1| peptide deformylase [Yersinia pestis KIM 10] gi|45440100|ref|NP_991639.1| peptide deformylase [Yersinia pestis biovar Microtus str. 91001] gi|51597955|ref|YP_072146.1| peptide deformylase [Yersinia pseudotuberculosis IP 32953] gi|108809222|ref|YP_653138.1| peptide deformylase [Yersinia pestis Antiqua] gi|108813987|ref|YP_649754.1| peptide deformylase [Yersinia pestis Nepal516] gi|145597483|ref|YP_001161558.1| peptide deformylase [Yersinia pestis Pestoides F] gi|150260710|ref|ZP_01917438.1| polypeptide deformylase [Yersinia pestis CA88-4125] gi|153950090|ref|YP_001402830.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758] gi|162418261|ref|YP_001605206.1| peptide deformylase [Yersinia pestis Angola] gi|165927898|ref|ZP_02223730.1| peptide deformylase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936499|ref|ZP_02225067.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275] gi|166010552|ref|ZP_02231450.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213183|ref|ZP_02239218.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004] gi|167398768|ref|ZP_02304292.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419139|ref|ZP_02310892.1| peptide deformylase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425700|ref|ZP_02317453.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468246|ref|ZP_02332950.1| peptide deformylase [Yersinia pestis FV-1] gi|170022577|ref|YP_001719082.1| peptide deformylase [Yersinia pseudotuberculosis YPIII] gi|186897151|ref|YP_001874263.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+] gi|218927448|ref|YP_002345323.1| peptide deformylase [Yersinia pestis CO92] gi|229836276|ref|ZP_04456443.1| peptide deformylase [Yersinia pestis Pestoides A] gi|229840100|ref|ZP_04460259.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842182|ref|ZP_04462337.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India 195] gi|229904518|ref|ZP_04519629.1| peptide deformylase [Yersinia pestis Nepal516] gi|270488264|ref|ZP_06205338.1| peptide deformylase [Yersinia pestis KIM D27] gi|294502316|ref|YP_003566378.1| peptide deformylase [Yersinia pestis Z176003] gi|23396545|sp|Q8ZJ79|DEF_YERPE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81691640|sp|Q664V4|DEF_YERPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123073067|sp|Q1CCX6|DEF_YERPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123372104|sp|Q1C2X9|DEF_YERPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158514064|sp|A4TH23|DEF_YERPP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167012067|sp|A7FNK2|DEF_YERP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687338|sp|A9R927|DEF_YERPG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238688470|sp|B1JJH8|DEF_YERPY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238691391|sp|B2K504|DEF_YERPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21961030|gb|AAM87567.1|AE014004_5 peptide deformylase [Yersinia pestis KIM 10] gi|45434955|gb|AAS60516.1| polypeptide deformylase [Yersinia pestis biovar Microtus str. 91001] gi|51591237|emb|CAH22903.1| polypeptide deformylase [Yersinia pseudotuberculosis IP 32953] gi|108777635|gb|ABG20154.1| peptide deformylase [Yersinia pestis Nepal516] gi|108781135|gb|ABG15193.1| peptide deformylase [Yersinia pestis Antiqua] gi|115346059|emb|CAL18925.1| polypeptide deformylase [Yersinia pestis CO92] gi|145209179|gb|ABP38586.1| peptide deformylase [Yersinia pestis Pestoides F] gi|149290118|gb|EDM40195.1| polypeptide deformylase [Yersinia pestis CA88-4125] gi|152961585|gb|ABS49046.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758] gi|162351076|gb|ABX85024.1| peptide deformylase [Yersinia pestis Angola] gi|165915615|gb|EDR34224.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275] gi|165920174|gb|EDR37475.1| peptide deformylase [Yersinia pestis biovar Orientalis str. F1991016] gi|165990642|gb|EDR42943.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205481|gb|EDR49961.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004] gi|166963133|gb|EDR59154.1| peptide deformylase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051272|gb|EDR62680.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055390|gb|EDR65184.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749111|gb|ACA66629.1| peptide deformylase [Yersinia pseudotuberculosis YPIII] gi|186700177|gb|ACC90806.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+] gi|229678636|gb|EEO74741.1| peptide deformylase [Yersinia pestis Nepal516] gi|229690492|gb|EEO82546.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India 195] gi|229696466|gb|EEO86513.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706344|gb|EEO92351.1| peptide deformylase [Yersinia pestis Pestoides A] gi|262360396|gb|ACY57117.1| peptide deformylase [Yersinia pestis D106004] gi|262364346|gb|ACY60903.1| peptide deformylase [Yersinia pestis D182038] gi|270336768|gb|EFA47545.1| peptide deformylase [Yersinia pestis KIM D27] gi|294352775|gb|ADE63116.1| peptide deformylase [Yersinia pestis Z176003] gi|320013375|gb|ADV96946.1| peptide deformylase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 170 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++VID+ ++ Sbjct: 9 YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIVIDISEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + DG Sbjct: 67 RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELETDG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|119475268|ref|ZP_01615621.1| peptide deformylase [marine gamma proteobacterium HTCC2143] gi|119451471|gb|EAW32704.1| peptide deformylase [marine gamma proteobacterium HTCC2143] Length = 168 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 99/156 (63%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++ ++ ++ I L+D+ML MY GIGLAA QI + R+VVID+ + Sbjct: 9 FPDPRLRTIAKTVDTVDESIRTLLDDMLVTMYDASGIGLAATQINIHQRIVVIDVSETGD 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP+II Y+EGCLS+P + V R I V+ +D + + +G Sbjct: 69 Q--PQVFINPEIIILDGPDHEYEEGCLSVPGFHETVSRPEKIIVKALDRDGNPFELQPEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHLNG LF+DH+S+LKR I K+ K Sbjct: 127 LLAVCIQHEVDHLNGKLFVDHISQLKRKRIRAKLEK 162 >gi|148262893|ref|YP_001229599.1| peptide deformylase [Geobacter uraniireducens Rf4] gi|146396393|gb|ABQ25026.1| peptide deformylase [Geobacter uraniireducens Rf4] Length = 171 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M++K ++ FPDP L++ S+P+ IN+ ++ L+ +M E MY G+GLAA QIGV R+VV Sbjct: 1 MIRK-ILTFPDPELKKKSQPVVVINNKVIELVRDMAETMYDAPGVGLAAPQIGVHQRIVV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ +V INP +I +D S +EGCLSIP Y A+V+R + V+ ++ + + Sbjct: 60 IDVAGKDDPPQLIVAINP-VIIHADGESYEEEGCLSIPKYAANVRRHERVVVKALNLDGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLA QHE+DHL+GILFIDH+S LKR++ +K + ++ Sbjct: 119 EITCKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRRTLE 165 >gi|261866825|ref|YP_003254747.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391665|ref|ZP_06635999.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412157|gb|ACX81528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1] gi|290952199|gb|EFE02318.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 170 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 69/157 (43%), Positives = 107/157 (68%), Gaps = 3/157 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+P+ L+ V P+ ++N + +IDNM + MY GIGLAA Q+ +L R++ ID++ Sbjct: 6 VLIYPEEHLKVVCDPVVEVNDNTRKIIDNMFDTMYQEGGIGLAAPQVDILQRIITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N +V INP+I+ + + +EGCLSIP +RA V R +TV+ +D + + + Sbjct: 65 -GDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLK 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKL 159 >gi|148978497|ref|ZP_01814971.1| peptide deformylase [Vibrionales bacterium SWAT-3] gi|145962404|gb|EDK27684.1| peptide deformylase [Vibrionales bacterium SWAT-3] Length = 171 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 105/160 (65%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ PD LR V++P++++ +I +D+M+E MY +GIGLAA Q+ R+VVID+ + Sbjct: 6 VLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D + Sbjct: 66 T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGNEFTFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|326793337|ref|YP_004311157.1| peptide deformylase [Marinomonas mediterranea MMB-1] gi|326544101|gb|ADZ89321.1| Peptide deformylase [Marinomonas mediterranea MMB-1] Length = 168 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 67/155 (43%), Positives = 106/155 (68%), Gaps = 4/155 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP LR V++ +E++ +I ID+ML+ MY GIGLAA Q+ + R+VV+D Sbjct: 5 PVLEYPDPKLRTVAKEVEQVTPEIQAYIDDMLDTMYDESGIGLAATQVDIHLRIVVMD-- 62 Query: 65 DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 H+ +N PMVFINP+ + D+ + +QEGCLS+P Y + R+A + V+ +D + + Sbjct: 63 -HSEERNEPMVFINPEFVVLDDEPNEFQEGCLSVPGYYEHIYRAAKVKVKALDRDGKPFE 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + D L+A C+QHE+DHL+G LF+D++S LKR+ I Sbjct: 122 MEVDELMAVCVQHEIDHLDGKLFVDYISPLKRNRI 156 >gi|167950832|ref|ZP_02537906.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 194 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 104/161 (64%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++P+ +++ I L+D+M E MY GIGLAA Q+ V +++VIDL + Sbjct: 27 FPDSRLRNKAKPVSQVDDAIRKLVDDMFETMYEAPGIGLAATQVNVAKQIIVIDLSEE-- 84 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P+ INP+I++ + + EGCLS+P VKR+A I+VR +D + + +G Sbjct: 85 KNQPLCLINPEILSKEGEEKM-DEGCLSVPGIYESVKRAARISVRALDRDGAPFELETEG 143 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHLNG LF+D+LS LKR I K++ K +LR Sbjct: 144 LLAVCIQHEIDHLNGKLFVDYLSSLKRQRIRKRLEKESRLR 184 >gi|260583339|ref|ZP_05851112.1| peptide deformylase [Haemophilus influenzae NT127] gi|260093610|gb|EEW77525.1| peptide deformylase [Haemophilus influenzae NT127] Length = 169 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ ID++ Sbjct: 6 VLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N V INP+I+ + + +EGCLSIP +RA V R + VR +D + + + Sbjct: 65 -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVKVRALDRDGKEFTLD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161 >gi|227328917|ref|ZP_03832941.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 170 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP++I S D + +EGCLSIP+ RA V R+ + VR +D + + A Sbjct: 67 RDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKAFELEASE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAK 164 >gi|88860597|ref|ZP_01135234.1| N-terminal methionine peptide deformylase [Pseudoalteromonas tunicata D2] gi|88817192|gb|EAR27010.1| N-terminal methionine peptide deformylase [Pseudoalteromonas tunicata D2] Length = 167 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ +++ I ++ +M + MY GIGLAA Q + R+VVID+ + Sbjct: 9 FPDERLRTIAKPVTQVDDSIKKIVADMFDTMYEESGIGLAATQANIHLRIVVIDVTED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + + +V INP+I T D ++ +EGCLS+P+ A V R+ +TV+ ++ + Q + ADG Sbjct: 67 KSDQLVLINPEI-TKKDGSTISEEGCLSVPNSYAKVDRAETVTVKALNLDGQEFSLDADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHELDHL G LF+D+LS LKRD I KK+ K ++ Sbjct: 126 LLAICIQHELDHLQGKLFVDYLSPLKRDRIRKKLEKEAKM 165 >gi|171464332|ref|YP_001798445.1| peptide deformylase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238692833|sp|B1XSN2|DEF_POLNS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|171193870|gb|ACB44831.1| peptide deformylase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 171 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 107/159 (67%), Gaps = 2/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PD L +V++P+ ++++ I ++ +M + MY G+GLAA Q+ + R+VVID+ D Sbjct: 6 VLCYPDSRLHKVAKPVAQVDARIKKIVADMADTMYEAPGVGLAATQVDIHERIVVIDVSD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + MVFINP+I+ S + ++EGCLS+P++ +V+R A I V+ +D + + I Sbjct: 66 E--QNELMVFINPEIVWTSSETKSWREGCLSVPEFYDEVERPAEIRVKALDIDGKEFEIE 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADG LA CLQHELDHL G +F+++LS KR I++KM K Sbjct: 124 ADGSLAVCLQHELDHLQGKVFVEYLSIFKRTRISQKMKK 162 >gi|253690150|ref|YP_003019340.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645184|sp|C6DFR5|DEF_PECCP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|251756728|gb|ACT14804.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 170 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP++I S D + +EGCLSIP+ RA V R+ + VR +D + + A Sbjct: 67 RDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKTFELEASE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAK 164 >gi|156932268|ref|YP_001436184.1| peptide deformylase [Cronobacter sakazakii ATCC BAA-894] gi|166198516|sp|A7MPE9|DEF_ENTS8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|156530522|gb|ABU75348.1| hypothetical protein ESA_00039 [Cronobacter sakazakii ATCC BAA-894] Length = 171 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 112/161 (69%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR V+ P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 RDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRDGKSFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LFID+LS +KR I +K+ KL +++ Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 166 >gi|15617090|ref|NP_240303.1| polypeptide deformylase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681842|ref|YP_002468228.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682397|ref|YP_002468781.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471547|ref|ZP_05635546.1| peptide deformylase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11131992|sp|P57563|DEF_BUCAI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767572|sp|B8D9R9|DEF_BUCA5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767573|sp|B8D821|DEF_BUCAT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|25303709|pir||E84987 formylmethionine deformylase (EC 3.5.1.31) [imported] - Buchnera sp. (strain APS) gi|10039155|dbj|BAB13189.1| polypeptide deformylase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622130|gb|ACL30286.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624685|gb|ACL30840.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 173 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 66/157 (42%), Positives = 108/157 (68%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR +++P+++IN I + ++M++ MY +GIGLAA Q+ + +++V++ + Sbjct: 9 YPDIRLRILAKPVKEINKKIQKIANDMIDTMYQEEGIGLAATQVNIPLQIIVVNTMEQ-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +KN +V INPKII D S+ +EGCLSIP+Y+A + RS +I V+ ++ + + I A Sbjct: 67 KKNNLVLINPKIIKKEGDISI-EEGCLSIPEYQASIPRSNYIQVQAVNLDGEKIEIEAKS 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +L+ C+QHE+DHL G LFID+LS+ KR+ I KK K+ Sbjct: 126 ILSICIQHEIDHLKGKLFIDYLSKFKRERIQKKFEKI 162 >gi|311109268|ref|YP_003982121.1| peptide deformylase 2 [Achromobacter xylosoxidans A8] gi|310763957|gb|ADP19406.1| peptide deformylase 2 [Achromobacter xylosoxidans A8] Length = 170 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 66/160 (41%), Positives = 108/160 (67%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L + ++P+ +++ I L+ +M E MY G+GLAA Q+ V R+VVID+ Sbjct: 5 PILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +++ +V INP+I SDD+ +Y+EGCLS+P DV+R++ I + +D + + Sbjct: 65 EDSNQL--LVLINPEITWHSDDYKIYEEGCLSVPGVYDDVERASRIRCKALDVDGKPFEF 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHELDHL G +F+++LS LK++ I ++ K Sbjct: 123 EADGLLAVCVQHELDHLEGKVFVEYLSSLKQNRIKTRLKK 162 >gi|188535243|ref|YP_001909040.1| peptide deformylase [Erwinia tasmaniensis Et1/99] gi|238692005|sp|B2VK93|DEF_ERWT9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188030285|emb|CAO98174.1| Peptide deformylase [Erwinia tasmaniensis Et1/99] Length = 169 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/157 (43%), Positives = 109/157 (69%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V I+P+++ S + + +EGCLSIP+ RA V R+ + +R +D + + ADG Sbjct: 67 RDERLVLIDPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNSFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHL G LFID+LS +KR I +K+ KL Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKL 162 >gi|167648525|ref|YP_001686188.1| peptide deformylase [Caulobacter sp. K31] gi|189083067|sp|B0T1S9|DEF_CAUSK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167350955|gb|ABZ73690.1| peptide deformylase [Caulobacter sp. K31] Length = 173 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 66/152 (43%), Positives = 97/152 (63%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +L++VS+ + ++ + L+D+MLE MY GIGLAAVQ+G L ++V+DL P Sbjct: 17 VLKQVSKDVPAVDDALRGLMDDMLETMYDAPGIGLAAVQVGELVNVIVMDLAREGEEPAP 76 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 F+NPKI S++ Y+EGCLS+P+ V+R A + + Y++ + A+ L A Sbjct: 77 RYFVNPKITWASEELFEYEEGCLSVPEVYDAVERPAKVKISYLNYQGEAVEEDAEELFAV 136 Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 C+QHE+DHL G+LFIDHLSRLKRD K+ K Sbjct: 137 CIQHEMDHLKGVLFIDHLSRLKRDRAISKVKK 168 >gi|50122919|ref|YP_052086.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043] gi|81693081|sp|Q6D002|DEF_ERWCT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|49613445|emb|CAG76896.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043] Length = 169 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP++I S D + +EGCLSIP+ RA V R+ + VR +D + + A Sbjct: 67 RDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKAFELEASE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAK 164 >gi|298529648|ref|ZP_07017051.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1] gi|298511084|gb|EFI34987.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1] Length = 169 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 105/159 (66%), Gaps = 1/159 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD IL + +RP+EKI+ I++L +M +MY GIGLAA Q+G R+V +DL + Sbjct: 8 YPDKILTQKARPVEKIDDYIIDLSRDMARLMYEHRGIGLAAPQVGESLRVVTVDLSGPDN 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +++ +INP+II S+D + +EGCLS+ Y+ V R+ + VR ++ + I + Sbjct: 68 QEDLFTYINPEIIA-SEDETTTEEGCLSVAGYQTRVCRARKVKVRALNLQGEEVIHEGED 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A CLQHE+DHLNGILFIDH+SRLKR M KK+ K ++ Sbjct: 127 LWAVCLQHEIDHLNGILFIDHISRLKRAMYDKKVKKWLE 165 >gi|239948084|ref|ZP_04699837.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis] gi|241563350|ref|XP_002401667.1| polypeptide deformylase, putative [Ixodes scapularis] gi|215501859|gb|EEC11353.1| polypeptide deformylase, putative [Ixodes scapularis] gi|239922360|gb|EER22384.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis] Length = 175 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/166 (41%), Positives = 106/166 (63%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S+P+ + +D+M++ MY DG GLAAVQ+GVL R++VID++ Sbjct: 5 PIVKAPDERLKQKSQPVLEFTDQTRKFMDDMIKTMYHEDGAGLAAVQVGVLKRILVIDIK 64 Query: 65 DHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH + P + +NP+II S++ EGC+S+P+ R +V R I +RY+D + Sbjct: 65 DHDSVERPKDLYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRYLDYHN 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 125 KQQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|117923458|ref|YP_864075.1| peptide deformylase [Magnetococcus sp. MC-1] gi|117607214|gb|ABK42669.1| peptide deformylase [Magnetococcus sp. MC-1] Length = 173 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 98/156 (62%), Gaps = 4/156 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+V PDP+L++ + P+ +++ I L+ +MLE MY+ GIGLAA Q+GV R++V+D+ Sbjct: 5 PIVTAPDPVLKKRAEPVVAVDASIQQLMRDMLETMYAAPGIGLAAPQVGVSKRVIVVDVT 64 Query: 64 --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + A P NP+II + + ++EGCLS+P+ V R + VR ++ + Sbjct: 65 YSEAAAQDGEPYCLANPEIIAAEGEIT-WEEGCLSVPESYGKVDRKEHVVVRGLNAQGEL 123 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A GL A CLQHE+DHL+G LFIDHLS LKR M Sbjct: 124 VTLEAHGLFAVCLQHEIDHLDGTLFIDHLSSLKRTM 159 >gi|330831510|ref|YP_004394462.1| peptide deformylase 1 [Aeromonas veronii B565] gi|328806646|gb|AEB51845.1| Peptide deformylase 1 [Aeromonas veronii B565] Length = 170 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 106/159 (66%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V+ P+E ++ ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 FPDERLRTVAAPVETFTPELQQIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R++P+V INP++I + +EGCLS+P RA V R+ I +R +D N + + AD Sbjct: 67 REDPLVLINPEVIEQCGSTGI-EEGCLSVPGSRALVPRAEQIKIRALDRNGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ + Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAR 164 >gi|300946508|ref|ZP_07160774.1| peptide deformylase [Escherichia coli MS 116-1] gi|300955324|ref|ZP_07167706.1| peptide deformylase [Escherichia coli MS 175-1] gi|300317768|gb|EFJ67552.1| peptide deformylase [Escherichia coli MS 175-1] gi|300453814|gb|EFK17434.1| peptide deformylase [Escherichia coli MS 116-1] Length = 169 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + + +D + + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKICALDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|88608268|ref|YP_506280.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama] gi|123763725|sp|Q2GE16|DEF_NEOSM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|88600437|gb|ABD45905.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama] Length = 186 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 109/173 (63%), Gaps = 13/173 (7%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64 L+I PDP+L VS + ++ + +D+MLE MY GIGLAAVQ+GVL R++V+D+ Sbjct: 6 LIIEPDPLLHEVSEAVAGLSDEKRVFLDDMLETMYHCGGIGLAAVQVGVLERIIVVDVPV 65 Query: 65 ---------DHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +H K+ P F+NP+II FS + EGCLS+P+ ++ R + V Sbjct: 66 GKEWHSSPLNHVGYKSSGGPYYFVNPEIIEFSQNLVPADEGCLSLPEQHYEIIRPDAVVV 125 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +Y++ + + ++ A+G LA C+QHE+DHLNG L++ HLS+LK D+ KK +++ Sbjct: 126 KYLNYDGEECLLKANGWLARCIQHEMDHLNGRLYVSHLSKLKHDLAIKKAAEI 178 >gi|325272511|ref|ZP_08138888.1| peptide deformylase [Pseudomonas sp. TJI-51] gi|324102354|gb|EGB99823.1| peptide deformylase [Pseudomonas sp. TJI-51] Length = 168 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ + + LID+M E MY GIGLAA Q+ V ++VV+DL + Sbjct: 9 FPDPRLRTIAKPVTVFDDALRQLIDDMFETMYEAPGIGLAATQVNVHQQVVVMDLSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP + +DD YQEGCLS+P + +V R + V+ D + + + +G Sbjct: 67 RSEPRVFINPTVEELTDDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPFELECEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K Sbjct: 127 LLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEK 162 >gi|227115518|ref|ZP_03829174.1| peptide deformylase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 170 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP++I S D + +EGCLSIP+ RA V R+ + VR +D + + A Sbjct: 67 RDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKPFELEASE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAK 164 >gi|241760428|ref|ZP_04758522.1| peptide deformylase [Neisseria flavescens SK114] gi|241319097|gb|EER55590.1| peptide deformylase [Neisseria flavescens SK114] Length = 167 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+EKI+ I L+ +M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 YPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVVMDLTED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 67 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++HLS+LK+ I K+ K Sbjct: 126 LLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKK 161 >gi|225075032|ref|ZP_03718231.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens NRL30031/H210] gi|261380545|ref|ZP_05985118.1| peptide deformylase [Neisseria subflava NJ9703] gi|319639522|ref|ZP_07994269.1| peptide deformylase [Neisseria mucosa C102] gi|224953637|gb|EEG34846.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens NRL30031/H210] gi|284796513|gb|EFC51860.1| peptide deformylase [Neisseria subflava NJ9703] gi|317399093|gb|EFV79767.1| peptide deformylase [Neisseria mucosa C102] Length = 167 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+EKI+ I L+ +M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 YPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVVMDLTED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 67 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++HLS+LK+ I K+ K Sbjct: 126 LLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKK 161 >gi|238792969|ref|ZP_04636599.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909] gi|238727823|gb|EEQ19347.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909] Length = 170 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++VID+ ++ Sbjct: 9 YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + VR +D + + + AD Sbjct: 67 RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKVRALDRDGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|238758793|ref|ZP_04619967.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236] gi|238703090|gb|EEP95633.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236] Length = 170 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++VID+ ++ Sbjct: 9 YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + VR +D + + + AD Sbjct: 67 RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKVRALDRDGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|188574933|ref|YP_001911862.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519385|gb|ACD57330.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 152 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/135 (52%), Positives = 97/135 (71%), Gaps = 5/135 (3%) Query: 31 LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFSDDFSV 89 L+D+M + MY GIGLAA Q+ V R +VID+ D KN P VF+NP+I++ + + Sbjct: 16 LLDDMFQTMYEAPGIGLAASQVDVHKRFMVIDVSD---EKNLPQVFVNPEIVSKQGE-QL 71 Query: 90 YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 QEGCLS+P ADV R+ ITVRY+D Q Q ++ADGLLA C+QHE+DHL+G LF+D+ Sbjct: 72 CQEGCLSVPGIYADVSRADAITVRYLDRQGQAQELHADGLLAVCIQHEMDHLDGKLFVDY 131 Query: 150 LSRLKRDMITKKMSK 164 LS LKR+M+ KK++K Sbjct: 132 LSPLKREMVRKKLAK 146 >gi|91791393|ref|YP_561044.1| peptide deformylase [Shewanella denitrificans OS217] gi|91713395|gb|ABE53321.1| peptide deformylase [Shewanella denitrificans OS217] Length = 170 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/161 (44%), Positives = 102/161 (63%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++ P+ + ID+M+E MY+ GIGLAA Q+ +L+V+DLQD Sbjct: 9 FPDERLRTIAVPVTDFGPQLQAQIDSMIETMYAEKGIGLAASQVDFHQQLIVMDLQDDIE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P +FINP+I+ S +FS +EGCLS+P A V R+ F+T++ +D + + + AD Sbjct: 69 R--PKIFINPEIVAKSGEFS-NEEGCLSVPGVYAKVDRAEFVTLKALDRDGKPFTVEADE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 L A C+QHE+DHL G LF+D+LS LKR I K+ K +L Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARLE 166 >gi|238752657|ref|ZP_04614128.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380] gi|238709084|gb|EEQ01331.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380] Length = 170 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+++ P++++NS+I ++D+M + MY+ +GIGLAA Q+ V +++VID+ ++ Sbjct: 9 YPDERLRKIAAPVKEVNSEIQRIVDDMFDTMYAEEGIGLAATQVDVHLQIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + AD Sbjct: 67 RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +L Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAKL 165 >gi|118578953|ref|YP_900203.1| peptide deformylase [Pelobacter propionicus DSM 2379] gi|118501663|gb|ABK98145.1| peptide deformylase [Pelobacter propionicus DSM 2379] Length = 172 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +P+P L++ S + I +I L+ +M E MY G+GLAA QIGV R+++ID+ Sbjct: 3 RTILTYPNPELKKKSAAVTIITDEIRELVSDMTETMYHAPGVGLAAPQIGVHQRVIIIDV 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 H ++ INP +I ++ S +EGCLS+P Y A+V+R A +TVR +D + Q Sbjct: 63 SAHDEPNELIIAINP-VIVHAEGESYEEEGCLSVPKYAANVRRHASVTVRGLDLEGREQT 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 +A+GLLA QHE+DHL+G LF+DHLS LKRD+ Sbjct: 122 WHAEGLLAIAFQHEIDHLDGRLFVDHLSPLKRDL 155 >gi|238921409|ref|YP_002934924.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146] gi|259645180|sp|C5BF17|DEF_EDWI9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238870978|gb|ACR70689.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146] Length = 171 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ +I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 FPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ + + +EGCLS+P+ RA V R+ I VR +D + + + DG Sbjct: 67 RDQRLVLINPELLQHDGEAGI-EEGCLSVPEQRALVTRAENIKVRALDRDGKSFELETDG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHL G LFID+LS LKR I +K+ KL Sbjct: 126 LLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKL 162 >gi|261346901|ref|ZP_05974545.1| peptide deformylase [Providencia rustigianii DSM 4541] gi|282564968|gb|EFB70503.1| peptide deformylase [Providencia rustigianii DSM 4541] Length = 173 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 108/161 (67%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR +++P+EK+++ I ++D+M E MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 YPDERLRTIAKPVEKVDASIQRIVDDMFETMYDEEGIGLAATQVDIHQRIIVIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP++I + + +EGCLSIP+ + V R+ + VR ++ N + + ADG Sbjct: 67 RSERLVLINPELIDKKGETGI-EEGCLSIPEQQGFVARAEQVKVRALNYNGELFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + R Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRQR 166 >gi|327398774|ref|YP_004339643.1| peptide deformylase [Hippea maritima DSM 10411] gi|327181403|gb|AEA33584.1| Peptide deformylase [Hippea maritima DSM 10411] Length = 168 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 102/158 (64%), Gaps = 2/158 (1%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 ++PD ILR+ ++ +EKI+ I++L++ M E MY +GIGLAA Q+G+ +LVVIDL+ Sbjct: 5 VYPDGILRKKAKDVEKIDDRIVDLLNQMRETMYKFNGIGLAAEQVGLQEKLVVIDLRPDG 64 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK-RSAFITVRYMDCNAQHQIIYA 126 + P+ INP II F ++EGCLS+P Y VK R +I V+Y+D N QI+ Sbjct: 65 -KNQPIELINPVIIASEGIFEEHEEGCLSVPGYYDVVKDRKKWIKVKYLDRNENEQILET 123 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D L+ +QHE+DHLNG LFIDHL +++ K+ K Sbjct: 124 DEFLSVVIQHEIDHLNGKLFIDHLPPTRKEFFKKQWKK 161 >gi|238763701|ref|ZP_04624660.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638] gi|238698003|gb|EEP90761.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638] Length = 170 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++VID+ ++ Sbjct: 9 YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + AD Sbjct: 67 RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|254467786|ref|ZP_05081192.1| peptide deformylase [beta proteobacterium KB13] gi|207086596|gb|EDZ63879.1| peptide deformylase [beta proteobacterium KB13] Length = 166 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/157 (45%), Positives = 102/157 (64%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +++ +E + L+ +M E MY + GIGLAA Q+ V R++VID+ D Sbjct: 9 YPDPRLHKIAEIVEVFDESTEKLVQDMAETMYESKGIGLAATQVDVHRRIIVIDISDD-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +K+ +V INPK+I F D Y EGCLS+P + VKR IT+ Y D + + ADG Sbjct: 67 KKDLLVLINPKLIKF-DGQQEYDEGCLSVPGFFETVKRYENITISYQDLKGNIKTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LL+ C+QHE+DHL G +FI++LS+LK+ I KK+SKL Sbjct: 126 LLSVCIQHEMDHLVGKVFIEYLSQLKQQRIKKKISKL 162 >gi|317401262|gb|EFV81903.1| peptide deformylase 1 [Achromobacter xylosoxidans C54] Length = 170 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 66/160 (41%), Positives = 108/160 (67%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L + ++P+ +++ I L+ +M E MY G+GLAA Q+ V R+VVID+ Sbjct: 5 PILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +++ +V INP+I SDD+ +Y+EGCLS+P +V+R++ I + +D + + Sbjct: 65 EESNQL--LVLINPEITWRSDDYKIYEEGCLSVPGIYDEVERASRIRCKALDIDGKPFEF 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHELDHL G +F+++LS LK++ I K+ K Sbjct: 123 DADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKK 162 >gi|157964273|ref|YP_001499097.1| peptide deformylase [Rickettsia massiliae MTU5] gi|157844049|gb|ABV84550.1| Polypeptide deformylase [Rickettsia massiliae MTU5] Length = 176 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/166 (42%), Positives = 107/166 (64%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++VID++ Sbjct: 6 PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHKDGAGLAAVQVGVLKRILVIDIK 65 Query: 65 DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH A K+ P+ +NP+II S++ EGC+S+P+ R +V R I +R +D + Sbjct: 66 DHDSVARPKDFYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRCLDYHG 125 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 126 KSQELQANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 171 >gi|291278698|ref|YP_003495533.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1] gi|290753400|dbj|BAI79777.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1] Length = 172 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/165 (43%), Positives = 108/165 (65%), Gaps = 1/165 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+PILRR S+ +++I+ ++ LID+M+E MY+ G+GLAA Q+GV R++VID Sbjct: 5 IVKYPNPILRRKSKEVKEIDGRVIKLIDDMVETMYAAPGLGLAAPQVGVNERILVIDPSA 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP +I +D + +EGCLSIP A+V+R+A + V+ +D + + I Sbjct: 65 GEDKSKLIKIINP-VIVEADGEVIEEEGCLSIPGEYANVRRAAKVLVKGLDVDGKEVEIE 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+ LLA QHE+DHLNG+LFID LS KR+ I K + K + D Sbjct: 124 AEDLLARAFQHEIDHLNGVLFIDRLSPTKRETIQKHIKKRIAAGD 168 >gi|269140540|ref|YP_003297241.1| peptide deformylase [Edwardsiella tarda EIB202] gi|267986201|gb|ACY86030.1| peptide deformylase [Edwardsiella tarda EIB202] gi|304560325|gb|ADM42989.1| Peptide deformylase [Edwardsiella tarda FL6-60] Length = 171 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++P+ ++ +I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 FPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ + + +EGCLS+P+ RA V R+ I VR +D + + + DG Sbjct: 67 RDQRLVLINPELLQHDGEAGI-EEGCLSVPEQRALVTRAESIKVRALDRDGKPFELETDG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHL G LFID+LS LKR I +K+ KL Sbjct: 126 LLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKL 162 >gi|67458716|ref|YP_246340.1| peptide deformylase [Rickettsia felis URRWXCal2] gi|67004249|gb|AAY61175.1| Polypeptide deformylase [Rickettsia felis URRWXCal2] Length = 175 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 70/166 (42%), Positives = 106/166 (63%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S+P+ + +D+M++ MY DG GLAAVQ+GVL R++VID++ Sbjct: 5 PIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMVKTMYHEDGGGLAAVQVGVLKRIMVIDIK 64 Query: 65 DHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH + P F +NP+II S++ EGC+S+P+ R +V R I +RY+D + Sbjct: 65 DHDPIERPKDFYPLFIVNPEIIEKSEELITANEGCISVPEQRIEVARPESIKIRYLDYHG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 125 KSQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|238797211|ref|ZP_04640712.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969] gi|238718848|gb|EEQ10663.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969] Length = 170 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++VID+ ++ Sbjct: 9 YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + AD Sbjct: 67 RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|123444064|ref|YP_001008034.1| peptide deformylase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238788878|ref|ZP_04632668.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641] gi|332163227|ref|YP_004299804.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|158512897|sp|A1JRZ1|DEF_YERE8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122091025|emb|CAL13908.1| polypeptide deformylase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238722905|gb|EEQ14555.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641] gi|318607709|emb|CBY29207.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica Y11] gi|325667457|gb|ADZ44101.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861818|emb|CBX71990.1| peptide deformylase [Yersinia enterocolitica W22703] Length = 170 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++VID+ ++ Sbjct: 9 YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + AD Sbjct: 67 RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|157825411|ref|YP_001493131.1| peptide deformylase [Rickettsia akari str. Hartford] gi|166198521|sp|A8GMJ8|DEF_RICAH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157799369|gb|ABV74623.1| peptide deformylase [Rickettsia akari str. Hartford] Length = 175 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++VID++ Sbjct: 5 PIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIK 64 Query: 65 DHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH + P F +NP++I S++ EGC+S+P R +V R I +RY+D + Sbjct: 65 DHDSVERPKDFYPLFIVNPEMIEKSEELIKSNEGCISVPGQRIEVARPESIKIRYLDYHG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 125 KSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|238898789|ref|YP_002924471.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259645182|sp|C4K6Y0|DEF_HAMD5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229466549|gb|ACQ68323.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 171 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 68/162 (41%), Positives = 109/162 (67%), Gaps = 3/162 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR+++ P++K++ I + D+MLE MY +GIGLAA Q+ + R++VID+ + H Sbjct: 9 FPDDRLRKIASPVKKMDDQIRQIADDMLETMYQAEGIGLAATQVNIHQRIIVIDVSEDRH 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P++ INP+++ S + + +EGCLSIP +A + R+ IT++ ++ + + AD Sbjct: 69 Q--PLILINPELLEKSGETGI-EEGCLSIPGEKAFIPRAKEITIQALNREGRSFRLSADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 LLA C+QHE+DHL G LF+D+LS KR I KKM KL ++ + Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPFKRQRIQKKMEKLQKINE 167 >gi|189426265|ref|YP_001953442.1| peptide deformylase [Geobacter lovleyi SZ] gi|189422524|gb|ACD96922.1| peptide deformylase [Geobacter lovleyi SZ] Length = 166 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 72/161 (44%), Positives = 104/161 (64%), Gaps = 1/161 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P++ FPDP+L++ S P+ I +I+ L +M E MY G+GLAA QIGVL R++VID+ Sbjct: 3 RPILAFPDPLLKQKSAPVTIITDEIIQLARDMAETMYDAPGVGLAAPQIGVLQRVIVIDV 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + INP ++ + + +EGCLS+PD+ A+VKR + V+ + Q +I Sbjct: 63 AAKNEPPQLITAINP-VVIHGEGETYEEEGCLSVPDFSANVKRHERVVVKGLSLEGQERI 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +ADGLLA QHE+DHL+GILF+D LS LKRD+ KK K Sbjct: 122 WHADGLLAVAFQHEIDHLDGILFVDRLSPLKRDLFVKKCKK 162 >gi|310778475|ref|YP_003966808.1| peptide deformylase [Ilyobacter polytropus DSM 2926] gi|309747798|gb|ADO82460.1| peptide deformylase [Ilyobacter polytropus DSM 2926] Length = 170 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 66/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + DP+LR+ + P+E +N +I +ID+M+E M+ G+GLAA QIGV R+ VID++D Sbjct: 8 YGDPVLRKEALPVEDVNDEIREIIDSMVESMHEAGGVGLAAPQIGVSKRIFVIDIEDGKI 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 RK INP+ + FS + ++EGCLS+P VKR A + ++Y + N + I A+G Sbjct: 68 RK----VINPEFLEFSKEIVEHEEGCLSVPGVYKKVKRPARVKIKYTNENGEKVIEEAEG 123 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LL+ QHE DHL+ LF+D LS + + M++KK+ L Sbjct: 124 LLSRAFQHEADHLDATLFVDKLSPVAKRMVSKKLQAL 160 >gi|304415447|ref|ZP_07396096.1| peptide deformylase [Candidatus Regiella insecticola LSR1] gi|304282711|gb|EFL91225.1| peptide deformylase [Candidatus Regiella insecticola LSR1] Length = 200 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 72/167 (43%), Positives = 110/167 (65%), Gaps = 10/167 (5%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD--- 65 FPD LR++++P+EKI+++I ++D+M + +Y+ +GIGLAA Q+ + +++VI + D Sbjct: 32 FPDVQLRKIAKPVEKIDANIERIVDDMFDTIYAEEGIGLAATQVNIHKQIIVIHIPDDSD 91 Query: 66 -----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 AH + P+V INP+++ S + + +EGCLSIP R VKRS + +R +D + Sbjct: 92 QNERIEAHYR-PLVLINPELLEESGETGI-KEGCLSIPGVREWVKRSERVKIRALDRDGN 149 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHE+DHL G LFID+LS LK I KK+ K Q Sbjct: 150 SFTLEADGLLAICIQHEMDHLKGKLFIDYLSPLKFQRIQKKIRKKAQ 196 >gi|77359005|ref|YP_338580.1| N-terminal methionine peptide deformylase [Pseudoalteromonas haloplanktis TAC125] gi|123587108|sp|Q3IDI2|DEF_PSEHT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|76873916|emb|CAI85137.1| N-terminal methionine peptide deformylase [Pseudoalteromonas haloplanktis TAC125] Length = 167 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 102/156 (65%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +++ + ++ + +I +MLE MY +GIGLAA Q+ + R+VVID+ + Sbjct: 9 FPDERLRTIAQEVAHVDDQVRVIIKDMLETMYDENGIGLAATQVNIHQRIVVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P+V INP+II D +V +EGCLS+P+ A V R+ +TV ++ + ++ AD Sbjct: 67 RNEPLVLINPQIIK-KDGTTVSEEGCLSVPNSYAKVDRAETVTVAALNEQGEEFVLDADE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL G LFID+LS LKR I KK+ K Sbjct: 126 LLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEK 161 >gi|84393441|ref|ZP_00992198.1| peptide deformylase [Vibrio splendidus 12B01] gi|86147129|ref|ZP_01065445.1| peptide deformylase [Vibrio sp. MED222] gi|84375957|gb|EAP92847.1| peptide deformylase [Vibrio splendidus 12B01] gi|85835013|gb|EAQ53155.1| peptide deformylase [Vibrio sp. MED222] Length = 170 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 103/160 (64%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ PD LR V++P++++ +I +D+M+E MY +GIGLAA Q+ R+VVID+ + Sbjct: 6 VLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I + + +EGCLS+P RA V R+A +TV+ +D Sbjct: 66 T--RDEPMVLINPEITDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDREGNEFTFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162 >gi|56750222|ref|YP_170923.1| peptide deformylase [Synechococcus elongatus PCC 6301] gi|81300149|ref|YP_400357.1| peptide deformylase [Synechococcus elongatus PCC 7942] gi|56685181|dbj|BAD78403.1| polypeptide deformylase [Synechococcus elongatus PCC 6301] gi|81169030|gb|ABB57370.1| peptide deformylase [Synechococcus elongatus PCC 7942] Length = 192 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 69/153 (45%), Positives = 98/153 (64%), Gaps = 2/153 (1%) Query: 1 MVKKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + K PL + D +LR+ ++ + +I+ ++ I ML+ MYS DGIGLAA Q+G+ +L Sbjct: 14 LAKPPLDLHYLGDRVLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQL 73 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +VIDL+ + P+V INPKI + D QEGCLSIP DV+R + V Y D N Sbjct: 74 IVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDEN 133 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Q + ADGLLA C+QHE+DHLNG+LF+D + Sbjct: 134 GRPQRLVADGLLARCIQHEMDHLNGVLFVDRVE 166 >gi|291333895|gb|ADD93575.1| peptide deformylase [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 171 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR ++P++++ + LIDNM+ MY + GIGLAA Q+ R++VID+ + Sbjct: 9 FPDPRLRTKAKPVQEVTNVHKELIDNMIHTMYESKGIGLAATQVDFHERILVIDISEE-- 66 Query: 69 RKNPMVFINPKI-ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R +P VFINP++ I + S Y+EGCLS+P + ++ R I V Y+D + + Q + + Sbjct: 67 RDDPQVFINPEVEILNKKEKSGYEEGCLSVPGFYEEIIRPEKIKVTYLDRDGKKQTLMPE 126 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 GLLA +QHE+DHL GIL +D++S +KR I +K+ K Sbjct: 127 GLLAVVIQHEIDHLEGILMVDYISSIKRQRIKQKLQK 163 >gi|238754205|ref|ZP_04615563.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473] gi|238707701|gb|EEQ00061.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473] Length = 170 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 112/160 (70%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + +++VID+ ++ Sbjct: 9 YPDERLRKVATPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQQIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ I +R +D + + + AD Sbjct: 67 RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKIKIRALDRDGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +L Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLDKLAKL 165 >gi|224826194|ref|ZP_03699297.1| peptide deformylase [Lutiella nitroferrum 2002] gi|224601831|gb|EEG08011.1| peptide deformylase [Lutiella nitroferrum 2002] Length = 167 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 102/156 (65%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V+RP+ ++ I LID+M E MY +GIGLAA Q+ V R+VVID+ + Sbjct: 9 YPDERLHKVARPVGAVDERIRQLIDDMAETMYECNGIGLAATQVNVHERVVVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + F+NP+I+ D +VY+EGCLS+P V RS ++ VR ++ N + I DG Sbjct: 67 KSALTAFVNPEIVERRGD-TVYEEGCLSVPGIYDKVHRSEWVRVRALNRNGEPFEIETDG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL+G +F+D+LS+LK+ I KM K Sbjct: 126 LLAICIQHEIDHLDGKVFVDYLSQLKQSRIKAKMKK 161 >gi|315125137|ref|YP_004067140.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp. SM9913] gi|315013650|gb|ADT66988.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp. SM9913] Length = 168 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 72/164 (43%), Positives = 105/164 (64%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR +++ + ++ + ++ +MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MARLEVLRFPDERLRTIAKEVTVVDDQVREIVKDMLETMYDENGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+II D +V +EGCLS+P A V R+ +TV ++ + Sbjct: 61 IDVSEE--RNEPLVLINPQIIK-KDGSTVSEEGCLSVPHSYAKVDRAETVTVAALNEEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I+ AD LLA C+QHELDHL G LFID+LS LKR I KK+ K Sbjct: 118 EFILDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEK 161 >gi|261378988|ref|ZP_05983561.1| peptide deformylase [Neisseria cinerea ATCC 14685] gi|269144603|gb|EEZ71021.1| peptide deformylase [Neisseria cinerea ATCC 14685] Length = 167 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 YPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVVMDLTED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 67 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAESVKVEALNEKGEKFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++HLS+LK+ I K+ K Sbjct: 126 LLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKK 161 >gi|121606766|ref|YP_984095.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] gi|120595735|gb|ABM39174.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] Length = 173 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 70/162 (43%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 5 PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL I +PDP L V++P+ ++ + L D M MY+ +GIGLAA Q+ V RLVVID Sbjct: 3 PLTILRYPDPRLHTVAKPVAAFDARLRQLADAMFHTMYAAEGIGLAATQVDVHERLVVID 62 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + + R P+V INP+I+ S + + EGCLS+P V+R+ + V +D N Q Q Sbjct: 63 VSEG--RNQPLVLINPEIVWASAETRIGDEGCLSVPGIYDGVERALAVKVAALDLNGQKQ 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K Sbjct: 121 LHEAEGMLAVCIQHEMDHLIGKVFVEYLSPLKRNRIKTKLIK 162 >gi|332285819|ref|YP_004417730.1| peptide deformylase [Pusillimonas sp. T7-7] gi|330429772|gb|AEC21106.1| peptide deformylase [Pusillimonas sp. T7-7] Length = 170 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 109/160 (68%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P+++++ I L+ +M E MY G+GLAA Q+ V R+VVID+ Sbjct: 5 PILRYPDPRLHKVAKPVQEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + + +V INP+I+ SD+ VY+EGCLS+P +V+RSA I VR ++ + Sbjct: 65 EDGN--DLIVLINPEILWKSDEVQVYEEGCLSVPGVYDEVERSARIRVRALNEQGEPYEF 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHELDHL G +F+++LS LK++ I ++ K Sbjct: 123 DAEGLLAVCVQHELDHLLGKVFVEYLSVLKQNRIKTRLRK 162 >gi|269958379|ref|YP_003328166.1| peptide deformylase [Anaplasma centrale str. Israel] gi|269848208|gb|ACZ48852.1| peptide deformylase [Anaplasma centrale str. Israel] Length = 199 Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 109/180 (60%), Gaps = 23/180 (12%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-----IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 PLV PD R+S E++++D + L ++ML+ MY GIGLAAVQ+GV R+ Sbjct: 16 PLVTLPDS---RLSLCSEEVHADDFGQQLETLANDMLDTMYHNKGIGLAAVQVGVHKRIF 72 Query: 60 VIDLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 V+DL+ + R P V +NP I+ S+ +EGCLS+PDYR V Sbjct: 73 VVDLEYGSDRYEVPRDDGAGEFRATCGPTVVVNPVIVEESERLVAMEEGCLSVPDYRETV 132 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +R I V+Y+D N + + I A GLLA CLQHELDHLNG++F+ +S+LKRDM+ +K+ + Sbjct: 133 RRPESIVVQYVDLNRRQKYIKACGLLARCLQHELDHLNGVVFLQRISKLKRDMVMEKIRR 192 >gi|268593574|ref|ZP_06127795.1| peptide deformylase [Providencia rettgeri DSM 1131] gi|291310851|gb|EFE51304.1| peptide deformylase [Providencia rettgeri DSM 1131] Length = 173 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 68/161 (42%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR +++P++K+++ I ++D+M + MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 YPDERLRTIAKPVDKVDASIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R + +V INP+++ S + + +EGCLSIP+ V R+ + VR ++ N + + ADG Sbjct: 67 RDDRLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEQVKVRALNYNGESFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +LR Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166 >gi|212709012|ref|ZP_03317140.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM 30120] gi|212688378|gb|EEB47906.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM 30120] Length = 173 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 107/161 (66%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR V++P+EK+++ I +ID+M + MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 YPDERLRTVAKPVEKVDASIQRIIDDMFDTMYDEEGIGLAATQVDIHQRIIVIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ + + +EGCLS+P+ V R+ + VR ++ N + ADG Sbjct: 67 RNERLVLINPELLNKEGETGI-EEGCLSVPEQHGFVPRAEKVKVRALNYNGDAFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +LR Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166 >gi|254491036|ref|ZP_05104217.1| peptide deformylase [Methylophaga thiooxidans DMS010] gi|224463549|gb|EEF79817.1| peptide deformylase [Methylophaga thiooxydans DMS010] Length = 167 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 101/156 (64%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR+ + PI +N I L D+MLE MY GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDPRLRKKAEPITDVNDKIRQLADDMLETMYDAPGIGLAATQVNIQKRILVIDISED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + +P+V INP+I+ + ++EGCLS+P+ V R+ + ++ ++ + DG Sbjct: 67 KSDPLVLINPEIVAAEGERE-FEEGCLSVPEAYEAVIRADKVKIKAVNLQGEDFEFTTDG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLATC+QHE+DHL+G LF+D+LS LKR I K++ K Sbjct: 126 LLATCVQHEIDHLDGKLFVDYLSNLKRQRIKKRLEK 161 >gi|37528512|ref|NP_931857.1| peptide deformylase [Photorhabdus luminescens subsp. laumondii TTO1] gi|39930823|sp|Q7MYI2|DEF_PHOLL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|36787950|emb|CAE17067.1| polypeptide deformylase (PDF) (formylmethionine deformylase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 170 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 69/157 (43%), Positives = 107/157 (68%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR ++ P+E ++++I +ID+M E MY+ +GIGLAA Q+ + R+VVID+ + Sbjct: 9 YPDERLRTIATPVETVDAEIRRIIDDMFETMYAEEGIGLAATQVDIHQRIVVIDVSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + ++ +D N + + AD Sbjct: 67 RNERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIKALDYNGRPFELQADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKL 162 >gi|170718226|ref|YP_001785248.1| peptide deformylase [Haemophilus somnus 2336] gi|189083072|sp|B0UWZ5|DEF_HAES2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|168826355|gb|ACA31726.1| peptide deformylase [Haemophilus somnus 2336] Length = 170 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 103/160 (64%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ V+ P+ + ++ IDNM E MY +GIGLAA Q+ V R++ ID++ Sbjct: 6 VLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N +V INPKI+ + + +EGCLS+P R V R + V+ + + ++ Sbjct: 65 -GTKENQIVLINPKILESFGETGI-EEGCLSLPGLRGFVPRKETVKVKAQNRQGEEFMLD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLLA C+QHE+DHLNGI+F DHLS LKR + +K+ KL Sbjct: 123 ADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKL 162 >gi|260774331|ref|ZP_05883246.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] gi|260611292|gb|EEX36496.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] Length = 171 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 74/163 (45%), Positives = 110/163 (67%), Gaps = 5/163 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP L+ + ++ I S + LID+MLE +YSTD GIGLA+VQ+G +V+IDL Sbjct: 6 ILTAPDPRLKITAEKVQDIES-VQKLIDDMLETLYSTDNGIGLASVQVGRKEAVVIIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D+ R P++ INP++++ S+ ++ QEGCLS+PDY A+V+R + V +D Q I Sbjct: 65 DN--RDQPLILINPEVVSGSNK-ALGQEGCLSVPDYYAEVERYTSVVVSALDRTGQRITI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +D LA +QHE+DHL+G LFID++S LKR M KK+ K V+ Sbjct: 122 ESDDFLAIVMQHEIDHLSGNLFIDYISPLKRQMAMKKVKKYVK 164 >gi|323141161|ref|ZP_08076062.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] gi|322414304|gb|EFY05122.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] Length = 160 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 67/148 (45%), Positives = 96/148 (64%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +VI P+LR V++P+E+I+ + L+ +M E MYS DG+GLAA Q+GV R+VV Sbjct: 1 MAKLKIVIAGAPVLREVAQPVERIDKKLQRLLRDMAETMYSADGVGLAAPQVGVSKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I+ + EGCLS+PDY +V+RS ++ + D Q Sbjct: 61 IDVGEGLYE-----LINPEIVKREGKV-LGSEGCLSVPDYEGEVERSEYVECEFTDKTGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 ++ A GLLA C+QHELDHL+GILFID Sbjct: 115 RMLLSASGLLAICIQHELDHLDGILFID 142 >gi|253997897|ref|YP_003049960.1| peptide deformylase [Methylovorus sp. SIP3-4] gi|313199962|ref|YP_004038620.1| peptide deformylase [Methylovorus sp. MP688] gi|253984576|gb|ACT49433.1| peptide deformylase [Methylovorus sp. SIP3-4] gi|312439278|gb|ADQ83384.1| peptide deformylase [Methylovorus sp. MP688] Length = 166 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 72/157 (45%), Positives = 107/157 (68%), Gaps = 5/157 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L V++P++++N++I LID+M E MY+ GIGLAA Q+ V +++V+DL + Sbjct: 9 YPDPRLYTVAKPVKEVNANIRRLIDDMAETMYAAPGIGLAATQVDVHQQIIVMDLSEA-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINPKI T Y+EGCLS+P +V R+A +TV +D N + ++ A Sbjct: 67 -KNELRVFINPKI-TAKCGAQDYEEGCLSVPGIYENVTRAAEVTVEALDRNGEPFVLEAQ 124 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 GLLA C+QHE+DHL G +F+D+LS LK++ I K+ K Sbjct: 125 GLLAVCIQHEMDHLLGKVFVDYLSPLKQNRIKTKLKK 161 >gi|330881833|gb|EGH15982.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 136 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 2/136 (1%) Query: 33 DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQE 92 D+M E MY GIGLAA Q+ V R+VV+DL + R PMVFINP+I +D+ YQE Sbjct: 1 DDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED--RSEPMVFINPEIEKLTDEMDQYQE 58 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 GCLS+P + +V R + V+ +D N + + A+GLLA C+QHE DHLNG LF+D+LS Sbjct: 59 GCLSVPGFYENVDRPQKVRVKALDRNGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSN 118 Query: 153 LKRDMITKKMSKLVQL 168 LKRD I KK+ K +L Sbjct: 119 LKRDRIKKKLEKQHKL 134 >gi|317494307|ref|ZP_07952721.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917557|gb|EFV38902.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 169 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 110/157 (70%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR V++P++++ +I ++D+M + MY+ +GIGLAA Q+ V R++VID+ ++ Sbjct: 9 FPDERLRTVAQPVKEVTPEIQRIVDDMFDTMYAEEGIGLAATQVDVHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP++++ SD + +EGCLS+P++RA V R+ + +R +D + + + AD Sbjct: 67 RDQRLVLINPELLS-SDGETGIEEGCLSVPEHRALVPRAERVKIRALDRDGKPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKL 162 >gi|94312496|ref|YP_585706.1| peptide deformylase [Cupriavidus metallidurans CH34] gi|93356348|gb|ABF10437.1| formylmethionine deformylase [Cupriavidus metallidurans CH34] Length = 168 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L +V++P+E ++ I L+ +M E MY GIGLAA Q+ V R++V Sbjct: 1 MAKLDILTYPDPRLHKVAKPVEVVDDRIRQLVKDMAETMYEAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R MVFINP++ S++ V++EGCLS+P+ V+R + VR +D + Sbjct: 61 IDISES--RDELMVFINPEVTWASENRKVWEEGCLSVPEVYDRVERPDRVKVRALDEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL+G +F+++LS LK I K+ K V+ R Sbjct: 119 AFELDADDLLAVCIQHEIDHLDGKVFVEYLSPLKLQRIKSKLQKRVRSR 167 >gi|152994060|ref|YP_001338895.1| peptide deformylase [Marinomonas sp. MWYL1] gi|150834984|gb|ABR68960.1| peptide deformylase [Marinomonas sp. MWYL1] Length = 181 Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 104/160 (65%), Gaps = 2/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR++++PI K ++ ID+ML+ MY +G+GLAA Q+ +RLVV+D + Sbjct: 19 YPDKRLRKIAKPITKFTDELQTKIDDMLDTMYDENGLGLAATQVDYHHRLVVMDFSEE-- 76 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P+VFINP+ D+ + +QEGCLS+P + + R+A + V+ +D N + + D Sbjct: 77 RNEPIVFINPEFEVLDDEPNEFQEGCLSVPGFYEHIYRAAKVRVKALDRNGKPFTLEVDE 136 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 L+A C+QHE+DHL+G L +D+L+ LKR+ I K+ K +L Sbjct: 137 LMAVCVQHEVDHLDGKLMVDYLTPLKRNRIKSKLEKAHKL 176 >gi|149375618|ref|ZP_01893387.1| polypeptide deformylase [Marinobacter algicola DG893] gi|149360020|gb|EDM48475.1| polypeptide deformylase [Marinobacter algicola DG893] Length = 167 Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 69/157 (43%), Positives = 100/157 (63%), Gaps = 2/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP LR +++P++++ + LID+M E MY GIGLAA Q+ V +++V+DL + Sbjct: 8 YPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVMDLSED-- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP++ + QEGCLS+P + DV R +R + + + I A G Sbjct: 66 KSEPRVFINPEVEVLEGELEEMQEGCLSVPGFYEDVSRIEHCMIRAIGRDGKPFEIEARG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHLNG LF+D+LS LKR I KK+ KL Sbjct: 126 LLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKL 162 >gi|269468439|gb|EEZ80104.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster bacterium] Length = 185 Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 111/182 (60%), Gaps = 20/182 (10%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP LR ++ ++ +N L+ NM E MY+ DGIGLAA QI ++VV+D+ Sbjct: 4 PILHYPDPRLRTKAKEVDAVNDKTRILVKNMFETMYAEDGIGLAATQINQHLQIVVMDVP 63 Query: 65 DH--------AHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 D +RKN P+ FINPKI T S + EGCLS+P ++A+V+ Sbjct: 64 DSQDDYELLLKNRKNDSDKETNIQHHPLCFINPKITTISG-HEKHIEGCLSVPGFQAEVE 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 RS IT+ ++ + ++A LLA C+QHELDHL GILF+D+LS+LK+ + +K K+ Sbjct: 123 RSNQITIEALNEQGESFTLHASNLLAVCIQHELDHLKGILFVDYLSKLKQKRLLEKTKKV 182 Query: 166 VQ 167 ++ Sbjct: 183 IK 184 >gi|21672742|ref|NP_660809.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008354|sp|Q8K975|DEF_BUCAP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21623388|gb|AAM68020.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 167 Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 3/148 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR +++P+EKI +I + +NM++ MY +GIGLAA Q+ + +++VI + HA Sbjct: 9 YPDQRLRLIAKPVEKITKEIYKITNNMIDTMYQEEGIGLAATQVNIQLQIIVIH-KIHAI 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 KN ++ INPKII S+ +EGCLSIP+YRA V R +I ++ ++ N I AD Sbjct: 68 EKN-LILINPKIIEKKGSISI-EEGCLSIPEYRAFVPRFNYIKIQAINLNGNTVEIEADS 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRD 156 +L+ C+QHE+DHLNG LFID+LS LKR+ Sbjct: 126 ILSICIQHEIDHLNGKLFIDYLSELKRE 153 >gi|218710998|ref|YP_002418619.1| peptide deformylase [Vibrio splendidus LGP32] gi|218324017|emb|CAV20379.1| Peptide deformylase [Vibrio splendidus LGP32] Length = 206 Score = 139 bits (351), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 71/165 (43%), Positives = 105/165 (63%), Gaps = 3/165 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ PD LR V++P++++ +I +D+M+E MY +GIGLAA Q+ R+VVID+ + Sbjct: 42 VLTLPDNRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 101 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP+I + + +EGCLS+P RA V R+A +TV+ +D Sbjct: 102 T--RDEPMVLINPEITDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDREGNEFTFD 158 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 159 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 203 >gi|325294662|ref|YP_004281176.1| peptide deformylase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065110|gb|ADY73117.1| Peptide deformylase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 177 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 3/160 (1%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 I+PD +L++ + + + N ++ L+++M E MY G+GLAA QIG+L ++VVIDL Sbjct: 7 IYPDDVLKKKAEVVTEFNEELEQLVNDMFETMYKRGGVGLAANQIGILKKVVVIDLHSGK 66 Query: 68 HR--KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + K ++ INP+I+ + V +EGCLS+P VKR+A+ V+ + + II Sbjct: 67 EKQGKEQIILINPEIVALEGE-EVKEEGCLSLPGLYKKVKRAAYAKVKAQNLKGEEFIIE 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +GLLA QHE+DHLNGI+FID LS L+R + +K KL Sbjct: 126 GEGLLARAFQHEIDHLNGIVFIDRLSPLQRRLALEKYKKL 165 >gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1] gi|300076747|gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +++ P+ + I L+ +M E MY+ G+GLAA Q+ V ++VVID+ D Sbjct: 9 YPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVVIDVSDDG- 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 KN VFINP+I+ S+D VY EGCLS+P V+R A + VR D + + + AD Sbjct: 68 -KNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAFEVDADE 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LKR+ I K+ K Sbjct: 127 LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQK 162 >gi|290477161|ref|YP_003470076.1| peptide deformylase [Xenorhabdus bovienii SS-2004] gi|289176509|emb|CBJ83318.1| peptide deformylase [Xenorhabdus bovienii SS-2004] Length = 170 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR +++P+EK+++ I ++ID+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 YPDERLRTIAKPVEKVDAGIQSIIDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ + +EGCLS+P+ RA V R + ++ +D + Q + AD Sbjct: 67 RDQRLVLINPELMNEVGATGI-EEGCLSVPEQRAFVPRFEQVKIKALDYHGQQFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LFID+LS LKR I +K+ K+ +LR Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKVEKIDRLR 166 >gi|260465452|ref|ZP_05812642.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] gi|259029756|gb|EEW31042.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] Length = 166 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP+P+LR V+ P++ +SD+ L ++++ M++ GIG+ IG+L RLVV Sbjct: 1 MAVRPIIRFPNPLLRAVAEPVKLFDSDLHGLAGDLVDTMHAAPGIGITGPHIGILRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I L A P +++NP I+ S + + EG +S+P D++R A I VRY D + Sbjct: 61 IQLPSAA---KPGIYVNPSIVHASTEMIRHAEGSVSMPGVTEDIERHARIIVRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q ADGLLA C QHE+D L+G+ + L+RLKRD + K+ KL++ Sbjct: 118 EQFENADGLLAVCHQHEIDQLDGLFWTHRLTRLKRDRLVKRYGKLMR 164 >gi|238783197|ref|ZP_04627223.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970] gi|238715993|gb|EEQ07979.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970] Length = 170 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 66/160 (41%), Positives = 110/160 (68%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++VID+ ++ Sbjct: 9 YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + D Sbjct: 67 RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELETDD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|257091704|ref|YP_003165345.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044228|gb|ACV33416.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 167 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 3/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FPDP LR+V+ ++KI+ I L +M E MY GIGLAA Q+ V R++V+D Sbjct: 5 PILRFPDPRLRKVAARVDKIDDGIRRLARDMAETMYEAPGIGLAATQVDVHARVIVVDAS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R + INP+I+ D V +EGCLS+P V+R+ + VRY D + Q + Sbjct: 65 ET--RDQLLTLINPEILQ-QDGLQVCEEGCLSVPGVYDKVERAEHVVVRYQDLDGAEQTV 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A GLLA CLQHE+DHL G +F++HLS+LK+ I K++K Sbjct: 122 DATGLLAVCLQHEIDHLQGRVFVEHLSQLKQLRIRNKLAK 161 >gi|71279368|ref|YP_266802.1| polypeptide deformylase [Colwellia psychrerythraea 34H] gi|71145108|gb|AAZ25581.1| polypeptide deformylase [Colwellia psychrerythraea 34H] Length = 171 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR ++P+ I +ID+ML MY +G+GLAA Q+ + R+VV+D + Sbjct: 9 FPDPRLRTKAQPVTDITDATATIIDDMLATMYEENGVGLAATQVDIHQRIVVMDTSED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P++FINP+II S++ S+ +EGCLS+P A V R TV+ +D + + + A Sbjct: 67 NDQPIIFINPEIIATSNETSINEEGCLSVPGTYAKVDRHDACTVKALDRHGKEFSLNATE 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L + C+QHELDHL G+LF+D+LS LKR I KK+ K Sbjct: 127 LQSICIQHELDHLKGVLFVDYLSPLKRQRIQKKLEK 162 >gi|145590257|ref|YP_001156854.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048663|gb|ABP35290.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 171 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 108/159 (67%), Gaps = 2/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PD L +V++P+ ++++ I ++ +M + MY G+GLAA Q+ + R+VVID+ D Sbjct: 6 VLCYPDQRLHKVAKPVAQVDARIQKIVADMADTMYDAPGVGLAATQVDIHERIVVIDVSD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + MVFINP+I+ S + ++EGCLS+P++ +V+R A I V+ ++ + + Sbjct: 66 D--QNELMVFINPEIVWASPEKKSWREGCLSVPEFYDEVERPAEIRVKALNLKGEEFELE 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA CLQHELDHL G +F+++LS LK+ I++KM K Sbjct: 124 ADGLLAVCLQHELDHLQGKVFVEYLSMLKQVRISQKMKK 162 >gi|220933382|ref|YP_002512281.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7] gi|254767610|sp|B8GU11|DEF_THISH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219994692|gb|ACL71294.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7] Length = 178 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 75/167 (44%), Positives = 114/167 (68%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR+ + P++K++ +I L+D+M E MY GIGLAA Q+ V +++V Sbjct: 1 MAKLEILHFPDPRLRKRAVPVDKVDDEIRRLVDDMFETMYDAPGIGLAATQVNVQRQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + P+VFINP+I+ + + QEGCLS+P Y V+R+ + VR +D N + Sbjct: 61 IDVSENNDQ--PLVFINPEILDRVGEEEM-QEGCLSVPGYFETVRRADRVRVRALDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ KL + Sbjct: 118 PFELETDGLLAVCIQHEMDHLDGKLFVDYLSPLKRNRIQKKLEKLTR 164 >gi|221135272|ref|ZP_03561575.1| peptide deformylase [Glaciecola sp. HTCC2999] Length = 169 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 103/159 (64%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR ++P+ IN I L+ +M E M + G+GLAA Q+ V +++V+D+ D Sbjct: 6 VLTFPDERLRTKAKPVNDINDSIRTLVADMFETMKAERGVGLAATQVNVHQQVIVMDVSD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P+VFINPK+I + +EGCLS+P+ A V+R+ +I V ++ + + + Sbjct: 66 D--QDTPLVFINPKVIE-QRGTKINEEGCLSVPNNYAKVERAEWIKVSALNEHGEEFTME 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHE+DHL G LF+D+LS LKR I KK+ K Sbjct: 123 AEGLLAVCIQHEMDHLQGKLFVDYLSSLKRQRIMKKLEK 161 >gi|157375143|ref|YP_001473743.1| peptide deformylase [Shewanella sediminis HAW-EB3] gi|157317517|gb|ABV36615.1| Peptide deformylase [Shewanella sediminis HAW-EB3] Length = 163 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R ++P++ I S + ID++L+ MY T DGIGLAA Q+G L+ ++VIDL Sbjct: 6 ILTIPDERLKRKAQPVKDIES-VQGFIDDLLDTMYDTEDGIGLAATQVGSLHAILVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 R P V INP+II DF V +EGCLSIP YRA V RS + ++ +D I Sbjct: 65 --PERDQPQVLINPEIIEAEGDF-VGEEGCLSIPGYRAKVTRSEKVKIKALDRTGTPFEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D LA +QHE++HL G++F DHLS+LK+ + KK+SK Sbjct: 122 ETDTFLAIVIQHEMEHLQGVVFTDHLSKLKQQIALKKVSK 161 >gi|124265476|ref|YP_001019480.1| peptide deformylase [Methylibium petroleiphilum PM1] gi|124258251|gb|ABM93245.1| peptide deformylase [Methylibium petroleiphilum PM1] Length = 170 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L V++P+++++ + L+D+MLE MY G+GLAA Q+ V R++VID+ D Sbjct: 9 YPDPRLHTVAKPVKEVDERVRQLVDDMLETMYDAQGVGLAATQVDVHERVIVIDVSDD-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P V INP+++ SD+ V EGCLS+P V R A +TVR + + Q A+ Sbjct: 67 RNEPRVLINPELLQVSDEMVVGDEGCLSVPQIYDKVPRHAKVTVRALGRDGQAYQFDAEE 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LL+ C+QHE+DHL G +F+++LS LKR+ I KM K Sbjct: 127 LLSVCVQHEMDHLMGKVFVEYLSPLKRNRIKSKMLK 162 >gi|146313352|ref|YP_001178426.1| peptide deformylase [Enterobacter sp. 638] gi|167012063|sp|A4WF95|DEF_ENT38 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145320228|gb|ABP62375.1| peptide deformylase [Enterobacter sp. 638] Length = 169 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 68/161 (42%), Positives = 112/161 (69%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + AD Sbjct: 67 REERLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKSFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL ++R Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 166 >gi|73666676|ref|YP_302692.1| peptide deformylase [Ehrlichia canis str. Jake] gi|72393817|gb|AAZ68094.1| peptide deformylase [Ehrlichia canis str. Jake] Length = 185 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 102/175 (58%), Gaps = 14/175 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L S + +++ + L+D+M E M+ G+GLAAVQ+G+ R++V+D+ Sbjct: 5 PIVTVPDKRLSLCSEEVREVDQSVKKLVDDMFEAMHVNKGVGLAAVQVGIHKRVLVVDVP 64 Query: 65 DHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + P INPKI+ S + +EGCLS+PDY V R ++ Sbjct: 65 EEFRETDDITSQIEGYELCGGPYCIINPKIVDASQEKVTLREGCLSVPDYFDYVVRPQYV 124 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 TV+Y+D N II A G LA CL+HE+DHLNGI+F+ +LS+ KRD K+ K+ Sbjct: 125 TVQYLDYNGNECIIKAQGWLARCLEHEIDHLNGIVFLKYLSKFKRDFAIGKVKKM 179 >gi|225024414|ref|ZP_03713606.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC 23834] gi|224942795|gb|EEG24004.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC 23834] Length = 167 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 99/157 (63%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 YPDPRLNLVAKPVEQVDERIKQLVADMAETMYEAKGIGLAATQVDVHERVVVMDLSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R V INP II D ++Y+EGCLS+P V R+ I +D + I+ADG Sbjct: 67 RDQLQVLINPVIIE-RDGETIYEEGCLSVPGVYDKVTRAESIVAEALDAEGKPYTIHADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L A C+QHE+DHL+G +F+ +LSRLK++ I KM KL Sbjct: 126 LQAICIQHEIDHLDGKVFVQYLSRLKQERIKTKMKKL 162 >gi|319788404|ref|YP_004147879.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] gi|317466916|gb|ADV28648.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] Length = 180 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 7/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ DP+LR+ S IE I+ + +L+ +MLE M DG GLAAVQIG L R++V Sbjct: 1 MAIRPILPITDPLLRQKSAEIETIDDSVRDLVSDMLETMQDADGAGLAAVQIGELRRILV 60 Query: 61 IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMD 116 D+ + HA K VFINP+II SD+ + EGCLS+P+ V R+ + VR+ D Sbjct: 61 ADIPLDEPHASHK---VFINPEIIWQSDEIQELEGEGCLSMPEIYFTVPRALEVKVRFTD 117 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +A ++A+G A C QHE+DHLNGI IDH+S LKRD K K +++ Sbjct: 118 LDAVTHEVHAEGFSAVCFQHEIDHLNGIRQIDHVSSLKRDKFLAKFRKYLRI 169 >gi|308272079|emb|CBX28687.1| Peptide deformylase [uncultured Desulfobacterium sp.] Length = 177 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 100/159 (62%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PD L ++P++ IN+D+ +ID+M+E MY GIGLA++QIG ++V D+ Sbjct: 12 ILTYPDRFLTNTAKPVKGINADLQKIIDDMIETMYDAPGIGLASIQIGCDKSMIVYDIDQ 71 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ V +NP II + EGCLS+PD R+DVKR+A + V +D I Sbjct: 72 TEHKRSIQVLLNPVIIETDGEIVSNNEGCLSVPDLRSDVKRAASVIVEALDREGNPLKIE 131 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A LA LQHE+DHLNG+LF+D +S LKR++ + + K Sbjct: 132 AHDQLAVVLQHEIDHLNGVLFLDRISTLKRELYKRHVKK 170 >gi|162452083|ref|YP_001614450.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56'] gi|161162665|emb|CAN93970.1| Polypeptide deformylase [Sorangium cellulosum 'So ce 56'] Length = 170 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP LR+ ++P+ +I+ +I LID+M E MY+ G+GLAA QIG +R+ + Sbjct: 1 MAIRTILHYPDPRLRQKAQPVGEISPEITKLIDDMAETMYAAPGVGLAATQIGEPHRVFL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ N +VFINP+I+ + EGCLS P D+KR+ +TVR + Sbjct: 61 VDIAADDEPSNLLVFINPEIVRQEGQLT-GPEGCLSFPGISEDIKRAERVTVRARGRDGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I ADGLLA +QHELDHL+G+L ID + LK+ ++ +KM K Sbjct: 120 TFEIAADGLLAVAIQHELDHLDGVLMIDRMGTLKKRIVQRKMQK 163 >gi|322434765|ref|YP_004216977.1| peptide deformylase [Acidobacterium sp. MP5ACTX9] gi|321162492|gb|ADW68197.1| peptide deformylase [Acidobacterium sp. MP5ACTX9] Length = 188 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP+L + + + + L+D M E MY GIGLAA QIG+ R+ VID+ + Sbjct: 27 WPDPVLAKKGVEVTAFDDRLKTLVDEMFESMYEAQGIGLAAPQIGISERITVIDVSFKKN 86 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 K+ + INP II ++ V +EGCLS+PD R V R+ ++ V+ D + D Sbjct: 87 PKDRLALINPVIIE-AEGKQVEEEGCLSLPDIREKVSRAGWVKVKAQDVTGTWFEVEGDE 145 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA LQHE+DHL+G+LFID +SRLKR+++ +K+ K+ Sbjct: 146 LLARALQHEIDHLDGVLFIDRISRLKRELVLRKIKKM 182 >gi|255020222|ref|ZP_05292291.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] gi|254970364|gb|EET27857.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] Length = 168 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 72/159 (45%), Positives = 105/159 (66%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PD L++ + PI +I+ DI L D+M E MY+ GIGLAA+Q+ RL+V+D+ + Sbjct: 6 IVEYPDVRLKQEAAPIARIDRDIEALADDMAETMYAAPGIGLAAIQVAAPQRLIVVDVSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R + +NP+II S + + QEGCLS+P V+R+ + VR +D + + Sbjct: 66 A--RNELLTLVNPEIIESSGEEEM-QEGCLSVPGVLETVRRAERVKVRALDLRGKTLELE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA CLQHE+DHLNG LF+DHLSRLK+++I +K K Sbjct: 123 ADGLLAVCLQHEIDHLNGTLFVDHLSRLKQNLIRRKAEK 161 >gi|269214256|ref|ZP_06158455.1| peptide deformylase [Neisseria lactamica ATCC 23970] gi|269210257|gb|EEZ76712.1| peptide deformylase [Neisseria lactamica ATCC 23970] Length = 181 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV+DL ++ Sbjct: 23 YPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVVMDLSEN-- 80 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 81 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 139 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 140 LLAICVQHELDHLMGIVFVERLSQLKQSRIKTKLKK 175 >gi|91774543|ref|YP_544299.1| peptide deformylase [Methylobacillus flagellatus KT] gi|91708530|gb|ABE48458.1| peptide deformylase [Methylobacillus flagellatus KT] Length = 167 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 104/159 (65%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PDP L +V+ P+E++N DI L+ +M E MY+ GIGLAA Q+ V +++VIDL + Sbjct: 6 ILTYPDPRLHKVAAPVEEVNDDIRQLVRDMAETMYAAPGIGLAATQVDVHKQVIVIDLSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + VFINPKI++ Y+EGCLS+P V R+A +TV +D + + + Sbjct: 66 D--KSALQVFINPKIVSQCGSQE-YEEGCLSVPGIYEPVTRAAEVTVEALDEHGKPFTLK 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHL G +F+++LS LK+ I K+ K Sbjct: 123 ADGLLAVCIQHEIDHLLGKVFVEYLSSLKQTRIKNKLKK 161 >gi|319778670|ref|YP_004129583.1| Peptide deformylase [Taylorella equigenitalis MCE9] gi|317108694|gb|ADU91440.1| Peptide deformylase [Taylorella equigenitalis MCE9] Length = 169 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 63/160 (39%), Positives = 109/160 (68%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L+++++ ++ ++ I ++++M E MY+ +G+GLAA Q+ + R+VVID+ Sbjct: 5 PILKYPDPRLKKIAKDVDVVDESIKKIVEDMAETMYAANGVGLAATQVDIHKRIVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R + +V INP+II S++ +++EGCLS+P +V+R + + V+ +D N Sbjct: 65 EE--RNDLLVLINPEIIGISEEKVIHEEGCLSVPTIYDNVERFSEVRVKALDQNGNAFEF 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHELDHL G +F++ LS LK++ I K+ K Sbjct: 123 KADGLLAICVQHELDHLMGKVFVEKLSALKQNRIKTKLKK 162 >gi|171909540|ref|ZP_02925010.1| peptide deformylase [Verrucomicrobium spinosum DSM 4136] Length = 192 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 110/177 (62%), Gaps = 16/177 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI+ DP+LR +PI ++ +I L +M+E M++ G+GLAA Q+G+ +L VI++ Sbjct: 4 PIVIYGDPVLRVKCKPITEVTEEIRKLSQDMIETMHNARGVGLAAPQVGIALQLAVIEVP 63 Query: 65 DHAH-----RKN----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 R N P++F+NPK+ + ++ +EGCLSIPD R++V+RSA Sbjct: 64 PDDESVTYVRLNGEDTPLAEAMPLIFLNPKL-DHGKEKAMGEEGCLSIPDLRSEVRRSAG 122 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + V Y + + + I ADGLLA LQHE+DHLNGILFID LS + + +K+ +L+ Sbjct: 123 VKVEYQTLDGETRTIEADGLLARALQHEIDHLNGILFIDRLSAAAKLGVRRKLKRLM 179 >gi|328952875|ref|YP_004370209.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109] gi|328453199|gb|AEB09028.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109] Length = 167 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 97/149 (65%), Gaps = 1/149 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P+ +L+ + P+ +I DI LID+M MY+ GIGLAA Q+G L R+++ D+ Sbjct: 9 YPESVLKEKALPVTEITEDIQRLIDDMAATMYNAPGIGLAANQVGALQRVIIFDITPKNE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + V INP+II ++ VYQE CLS+ DY ADV+R A + +D N + I A+ Sbjct: 69 GRKLNVLINPEIIA-AEGAQVYQEACLSVLDYAADVRRKARVLATGLDRNGKEVRIEAED 127 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDM 157 LLA LQHE+DHL+GILFID +SRLKR++ Sbjct: 128 LLAVVLQHEIDHLDGILFIDRISRLKRNL 156 >gi|225874677|ref|YP_002756136.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196] gi|254767569|sp|C1F541|DEF_ACIC5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225792384|gb|ACO32474.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196] Length = 170 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/165 (40%), Positives = 106/165 (64%), Gaps = 1/165 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+ +P+V +PDP+L++ + P+ + N ++ L+D+M E MY GIGLAA QIG+ RL V Sbjct: 1 MMIRPIVKYPDPVLQQPAEPVTEFNEELRALVDDMFESMYEAKGIGLAAPQIGISKRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + +V INP+II + +EGCLS+PD R V R+ +TVR + + + Sbjct: 61 IDLSFKENPDEKIVLINPEII-HREGRQYEEEGCLSLPDIREKVVRAEKVTVRAQNLDGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + LL+ QHE+DHL+G+LFI +S LKRD++ +++ K+ Sbjct: 120 WFEMDGEELLSRAFQHEIDHLDGVLFIFRISALKRDLVLRRIRKM 164 >gi|293602354|ref|ZP_06684800.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] gi|292819116|gb|EFF78151.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] Length = 170 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 105/160 (65%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L + ++P+ +++ I L+ +M E MY G+GLAA Q+ V R+VVID+ Sbjct: 5 PILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + ++ + INP+I SDD +Y+EGCLS+P +V+R++ I + +D + + Sbjct: 65 EDSN--ELLALINPEITWRSDDHKIYEEGCLSVPGIYDEVERASRIRCKALDIDGKPFEF 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHELDHL G +F+++LS LK++ I K+ K Sbjct: 123 EADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKK 162 >gi|113460190|ref|YP_718247.1| peptide deformylase [Haemophilus somnus 129PT] gi|123131908|sp|Q0I181|DEF_HAES1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|112822233|gb|ABI24322.1| peptide deformylase [Haemophilus somnus 129PT] Length = 170 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 103/160 (64%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ V+ P+ + ++ IDNM E MY +GIGLAA Q+ V R++ ID++ Sbjct: 6 VLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIITIDIE- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N +V INP+I+ + + +EGCLS+P R V R + V+ + + ++ Sbjct: 65 -GTKENQIVLINPEILESFGETGI-EEGCLSLPGLRGFVPRKETVKVKAQNRQGEDFMLD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLLA C+QHE+DHLNGI+F DHLS LKR + +K+ KL Sbjct: 123 ADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKL 162 >gi|126209175|ref|YP_001054400.1| peptide deformylase [Actinobacillus pleuropneumoniae L20] gi|165977146|ref|YP_001652739.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|126097967|gb|ABN74795.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877247|gb|ABY70295.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 154 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 65/147 (44%), Positives = 98/147 (66%), Gaps = 3/147 (2%) Query: 19 RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINP 78 P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ ID++ + N +V INP Sbjct: 3 EPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVITIDIE--GDKTNQVVLINP 60 Query: 79 KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHEL 138 +I+ + + +EGCLSIP +RA V R + V+ ++ + I ADGL A C+QHE+ Sbjct: 61 EILESCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGEEVIYEADGLFAICIQHEI 119 Query: 139 DHLNGILFIDHLSRLKRDMITKKMSKL 165 DHLNG+LF+DH+S LKR I +KM KL Sbjct: 120 DHLNGVLFVDHISALKRQRIKEKMQKL 146 >gi|158522244|ref|YP_001530114.1| peptide deformylase [Desulfococcus oleovorans Hxd3] gi|238686886|sp|A8ZUK5|DEF_DESOH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158511070|gb|ABW68037.1| peptide deformylase [Desulfococcus oleovorans Hxd3] Length = 173 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 65/162 (40%), Positives = 102/162 (62%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P +L+ + P+ I+ + LID+M + MY+ G+GLAAVQ+ RLV+ D+ D Sbjct: 6 IVTYPADVLKDGALPVANIDGKLQQLIDDMAQTMYAHQGVGLAAVQVDSGLRLVIYDVSD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++ V INP+++ + QEGCLS+P+ R DVKR+A + V +D + +I Sbjct: 66 QREKQQFRVVINPEVVAVDGECVSEQEGCLSVPELRTDVKRAATVRVEGVDREGRPLVID 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+GL A LQHE+DHLNG L +D SRLKR++ +K+ K ++ Sbjct: 126 AEGLEAIVLQHEIDHLNGTLILDRASRLKRELYKRKVQKRIK 167 >gi|304388911|ref|ZP_07370958.1| peptide deformylase [Neisseria meningitidis ATCC 13091] gi|304337045|gb|EFM03232.1| peptide deformylase [Neisseria meningitidis ATCC 13091] gi|316985956|gb|EFV64895.1| peptide deformylase [Neisseria meningitidis H44/76] Length = 181 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E+++ I LI +M E MY + GIGLAA Q+ V R+VV+DL + Sbjct: 23 YPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVVMDLTED-- 80 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 81 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 139 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 140 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 175 >gi|85060224|ref|YP_455926.1| peptide deformylase [Sodalis glossinidius str. 'morsitans'] gi|123738923|sp|Q2NQQ4|DEF_SODGM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|84780744|dbj|BAE75521.1| polypeptide deformylase [Sodalis glossinidius str. 'morsitans'] Length = 171 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+V++P+ +N I ++D+M E MY+ +GIGLAA Q+ + R++VID+ + Sbjct: 9 YPDERLRKVAKPVVDVNDAIRRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + EGCLSIPD R V R+ + V+ +D + + AD Sbjct: 67 RDQRLVMINPELLEKSGETGI-DEGCLSIPDQRGFVPRAEKVKVQALDRDGNSFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA C+QHE+DHL G LF+D+LS LKR I +KM KL ++ Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKLARM 165 >gi|94987209|ref|YP_595142.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis PHE/MN1-00] gi|94731458|emb|CAJ54821.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis PHE/MN1-00] Length = 171 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 69/157 (43%), Positives = 101/157 (64%), Gaps = 1/157 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L+++S ++ I DI NL M++ MY +GIGLAA Q+G L RL+V+D+ Sbjct: 8 YPDISLQKISLEVQDITQDIHNLAKQMVQTMYDANGIGLAAPQVGYLLRLIVVDVSGPEQ 67 Query: 69 RKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + + +V INPKI D F +EGCLS+PDYR+ VKR A + + +D ++ A+ Sbjct: 68 KSSLLVLINPKITPVIDSGFIEGEEGCLSVPDYRSKVKRHAKVLLDAIDLDSNPVSFEAE 127 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 GLL+ CLQHE+DHL+G LFID +S LKR + ++ K Sbjct: 128 GLLSVCLQHEIDHLDGKLFIDRVSYLKRKLYDGRLKK 164 >gi|319940733|ref|ZP_08015075.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] gi|319805884|gb|EFW02651.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] Length = 179 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K P++ +P P L + P+ N I L+++M E MY+ G+GLAA Q+G+L R+VV Sbjct: 1 MAKLPILQYPHPKLAAKAEPVADFNDAIKTLVNDMAETMYAAPGVGLAANQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + +VFINP+II D ++EGCLS+ VKR + V + + Sbjct: 61 IDITDD--NSDLLVFINPEIIETKGDLVDHEEGCLSLKGLYEHVKRPGQVRVHAQNIEGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GLLA C+QHE+DHLNGI+FIDHLS+LK+ K+ KL Sbjct: 119 PFELECTGLLAVCIQHEVDHLNGIVFIDHLSQLKKQRACTKLRKL 163 >gi|213855562|ref|ZP_03383802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 148 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 65/143 (45%), Positives = 101/143 (70%), Gaps = 3/143 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGNPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA C+QHE+DHL G LFID+LS Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLS 148 >gi|183598657|ref|ZP_02960150.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827] gi|188020843|gb|EDU58883.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827] Length = 167 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + ++ PD LR P+ I + LID++L+ MYSTD GIGLAA QIG ++ Sbjct: 1 MAVRAIIEIPDERLRVKCDPVTDIAA-AQPLIDDLLDTMYSTDNGIGLAATQIGATLSVM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ ++ R PMVF+NP+II S+ + YQEGCLS+P+ ADV R + V+ +D + Sbjct: 60 VIDISEN--RDQPMVFVNPEIIE-SEGETSYQEGCLSVPEIYADVARFKRVKVKALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I +D LA +QHE+DHL+G +F+DHLS LKR+M+ KK+ K +LR Sbjct: 117 KAFITDSDEFLAIVMQHEIDHLHGKVFLDHLSTLKRNMLLKKLKKQQRLR 166 >gi|299136398|ref|ZP_07029581.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] gi|298600913|gb|EFI57068.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] Length = 185 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 66/160 (41%), Positives = 102/160 (63%), Gaps = 1/160 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDP+L + + + ++ L+D M E MY+ GIGLAA QIG+ ++ VID+ Sbjct: 21 VVKYPDPVLSKPGEKVTEFTPELAQLVDEMFESMYAAQGIGLAAPQIGISKQITVIDVSF 80 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++ + INP+II + V +EGCLS+P+ R V R+A + VR + + + Sbjct: 81 KERPEDKLALINPEIIE-REGKQVEEEGCLSLPEIREKVSRAARVKVRAQNVKGEFFEVE 139 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + LLA LQHE+DHL+GILFI+HLSRLKRD++ +++ KL Sbjct: 140 GEELLARALQHEIDHLHGILFIEHLSRLKRDLVHRRIRKL 179 >gi|294338535|emb|CAZ86864.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp. 3As] Length = 168 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PDP L V++P+ ++ + L+ M E MY+++G+GLAA Q+ V R++V+D + Sbjct: 6 IIQYPDPRLYTVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIVMDTSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R P+ INP+I+ S + ++EGCLS+P V R A + VR +D Q + Sbjct: 66 E--RNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQPFEMD 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGL A C+QHE+DHL G +F+D+LS LKR+ I KM K Sbjct: 124 ADGLTAVCIQHEMDHLLGKVFVDYLSPLKRNRIKTKMLK 162 >gi|15676038|ref|NP_273168.1| peptide deformylase [Neisseria meningitidis MC58] gi|121633988|ref|YP_974233.1| peptide deformylase [Neisseria meningitidis FAM18] gi|161870945|ref|YP_001600125.1| peptide deformylase [Neisseria meningitidis 053442] gi|218767202|ref|YP_002341714.1| peptide deformylase [Neisseria meningitidis Z2491] gi|254805844|ref|YP_003084065.1| peptide deformylase [Neisseria meningitidis alpha14] gi|54036954|sp|P63916|DEF_NEIMB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|54040742|sp|P63915|DEF_NEIMA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512959|sp|A1KRE5|DEF_NEIMF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083074|sp|A9M464|DEF_NEIM0 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|7225325|gb|AAF40569.1| peptide deformylase [Neisseria meningitidis MC58] gi|120865694|emb|CAM09421.1| polypeptide deformylase [Neisseria meningitidis FAM18] gi|121051210|emb|CAM07481.1| polypeptide deformylase [Neisseria meningitidis Z2491] gi|161596498|gb|ABX74158.1| polypeptide deformylase [Neisseria meningitidis 053442] gi|254669386|emb|CBA08535.1| peptide deformylase [Neisseria meningitidis alpha14] gi|254671149|emb|CBA08206.1| polypeptide deformylase [Neisseria meningitidis alpha153] gi|254672814|emb|CBA06953.1| polypeptide deformylase [Neisseria meningitidis alpha275] gi|261391648|emb|CAX49096.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria meningitidis 8013] gi|308388328|gb|ADO30648.1| polypeptide deformylase [Neisseria meningitidis alpha710] gi|319411407|emb|CBY91818.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria meningitidis WUE 2594] gi|325129146|gb|EGC51994.1| peptide deformylase [Neisseria meningitidis N1568] gi|325131145|gb|EGC53866.1| peptide deformylase [Neisseria meningitidis OX99.30304] gi|325133177|gb|EGC55848.1| peptide deformylase [Neisseria meningitidis M6190] gi|325135219|gb|EGC57844.1| peptide deformylase [Neisseria meningitidis M13399] gi|325137169|gb|EGC59764.1| peptide deformylase [Neisseria meningitidis M0579] gi|325138789|gb|EGC61341.1| peptide deformylase [Neisseria meningitidis ES14902] gi|325141255|gb|EGC63754.1| peptide deformylase [Neisseria meningitidis CU385] gi|325143271|gb|EGC65609.1| peptide deformylase [Neisseria meningitidis 961-5945] gi|325145432|gb|EGC67708.1| peptide deformylase [Neisseria meningitidis M01-240013] gi|325197399|gb|ADY92855.1| peptide deformylase [Neisseria meningitidis G2136] gi|325199324|gb|ADY94779.1| peptide deformylase [Neisseria meningitidis H44/76] gi|325203055|gb|ADY98509.1| peptide deformylase [Neisseria meningitidis M01-240149] gi|325203229|gb|ADY98682.1| peptide deformylase [Neisseria meningitidis M01-240355] gi|325205203|gb|ADZ00656.1| peptide deformylase [Neisseria meningitidis M04-240196] gi|325207147|gb|ADZ02599.1| peptide deformylase [Neisseria meningitidis NZ-05/33] Length = 167 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E+++ I LI +M E MY + GIGLAA Q+ V R+VV+DL + Sbjct: 9 YPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVVMDLTED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 67 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 161 >gi|288575787|ref|ZP_05977581.2| peptide deformylase [Neisseria mucosa ATCC 25996] gi|288566988|gb|EFC88548.1| peptide deformylase [Neisseria mucosa ATCC 25996] Length = 193 Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+EK++ I L+ +M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 35 YPDERLHTVAKPVEKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVVMDLTED-- 92 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VF+NP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 93 RSEPRVFVNP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 151 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 152 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 187 >gi|119503586|ref|ZP_01625669.1| peptide deformylase [marine gamma proteobacterium HTCC2080] gi|119460648|gb|EAW41740.1| peptide deformylase [marine gamma proteobacterium HTCC2080] Length = 168 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 2/162 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR ++ P+ +++ + L D+MLE MY GIGLAA Q+ V R++VID+ ++ Sbjct: 9 FPDPRLRTIAVPVTHVDARVQRLTDDMLETMYDAPGIGLAATQVDVHERVIVIDISEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P +FINP + Y EGCLS+P + ++R I V D + + DG Sbjct: 67 KDQPQIFINPVVEALDQTLGEYDEGCLSVPGFYETIRRPERIRVTAKDRDGELFSRELDG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 LLA CLQHE+DHL G LF+D+LS LKR I K+ K + RD Sbjct: 127 LLAICLQHEIDHLEGKLFVDYLSPLKRQRIRGKLEKAQRQRD 168 >gi|87121016|ref|ZP_01076908.1| peptide deformylase [Marinomonas sp. MED121] gi|86163854|gb|EAQ65127.1| peptide deformylase [Marinomonas sp. MED121] Length = 169 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP LR V++P+ N + ID+MLE MY +G+GLAA Q+ RLVV+D Sbjct: 5 PVLEYPDPRLRTVAKPVTDFNDALQVKIDDMLETMYDQNGLGLAATQVDFHQRLVVMDFS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + +PMVFINP+ D + QEGCLS+P + + R+A + V +D N Sbjct: 65 EE--KNDPMVFINPRFEVLDDAANEEQEGCLSVPGFYEHIYRAARVKVIALDRNGNEFEK 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 GLLA C+QHE+DHL+G L +D+LS LKR+ I K+ K Sbjct: 123 KVAGLLAVCVQHEIDHLDGKLMVDYLSPLKRNRIKTKLVK 162 >gi|309378546|emb|CBX22818.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 167 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 YPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVVMDLTED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 67 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 161 >gi|261823200|ref|YP_003261306.1| peptide deformylase [Pectobacterium wasabiae WPP163] gi|261607213|gb|ACX89699.1| peptide deformylase [Pectobacterium wasabiae WPP163] Length = 170 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR ++ ++++N+DI ++D+M + MY +GIGLAA Q+ + R++VID+ + Sbjct: 9 FPDERLRITAQSVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP++I S + + +EGCLSIP+ RA V R+ + VR +D + + A Sbjct: 67 RDQRLVLINPELIEKSGETGI-EEGCLSIPETRALVPRAEHVKVRALDREGKVFELEASE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAK 164 >gi|295096931|emb|CBK86021.1| peptide deformylase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 169 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + AD Sbjct: 67 RDERLVLINPEMLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|288550484|ref|ZP_05970614.2| peptide deformylase [Enterobacter cancerogenus ATCC 35316] gi|288314935|gb|EFC53873.1| peptide deformylase [Enterobacter cancerogenus ATCC 35316] Length = 164 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 68/161 (42%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 4 IPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSEN-- 61 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + AD Sbjct: 62 RDGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKPFELEADD 120 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL ++R Sbjct: 121 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 161 >gi|149925345|ref|ZP_01913609.1| peptide deformylase [Limnobacter sp. MED105] gi|149825462|gb|EDM84670.1| peptide deformylase [Limnobacter sp. MED105] Length = 169 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 68/165 (41%), Positives = 103/165 (62%), Gaps = 2/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L+ V+ P+ + + ++ L +M E MY G+GLAA Q+ V R++VID+ Sbjct: 5 PILRYPDPRLKTVATPVTQFDDALVKLTQDMAETMYDAPGVGLAATQVNVHKRIIVIDVT 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D + VFINP+II S + VY+EGCLS+P V+R + VR + + I Sbjct: 65 DD--KSGLTVFINPEIIDASKECKVYEEGCLSVPGIYEKVERPDTVKVRAQNVKGEWFEI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D LLA C+QHE+DHLNG +F+++LS+LK+ I KM K +L+ Sbjct: 123 DCDELLAVCIQHEIDHLNGKVFVEYLSQLKQTRIKTKMKKQDKLQ 167 >gi|296104994|ref|YP_003615140.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059453|gb|ADF64191.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 169 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 109/161 (67%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + AD Sbjct: 67 RDGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGNPFELEADD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|152977798|ref|YP_001343427.1| peptide deformylase [Actinobacillus succinogenes 130Z] gi|150839521|gb|ABR73492.1| peptide deformylase [Actinobacillus succinogenes 130Z] Length = 183 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 105/159 (66%), Gaps = 3/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ V+ P+ + N ++ ID+M + MY +GIGLAA Q+ V R++ ID+ Sbjct: 18 VLIYPDERLKTVAAPVTEFNDELQTFIDDMFDTMYQEEGIGLAATQVDVHKRVITIDIS- 76 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +V INP+++ S+ + +EGCLS+P +R V R ITV+ ++ + ++ Sbjct: 77 -GEKNEQLVLINPELLD-SEGETGIEEGCLSLPGFRGFVPRKEKITVKALNRYGEEFTLH 134 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ K Sbjct: 135 ADGLLAICIQHEMDHLNGIVFADYLSPLKRNRMKEKLVK 173 >gi|194099884|ref|YP_002003021.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945] gi|291042744|ref|ZP_06568485.1| peptide deformylase [Neisseria gonorrhoeae DGI2] gi|293398236|ref|ZP_06642441.1| polypeptide deformylase [Neisseria gonorrhoeae F62] gi|193935174|gb|ACF30998.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945] gi|291013178|gb|EFE05144.1| peptide deformylase [Neisseria gonorrhoeae DGI2] gi|291611499|gb|EFF40569.1| polypeptide deformylase [Neisseria gonorrhoeae F62] gi|317165346|gb|ADV08887.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107] Length = 181 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E+++ I L+ +M E MY + GIGLAA Q+ V R+VV+DL + Sbjct: 23 YPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVVMDLTED-- 80 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 81 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKFTLEADG 139 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 140 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 175 >gi|270157753|ref|ZP_06186410.1| peptide deformylase [Legionella longbeachae D-4968] gi|289163978|ref|YP_003454116.1| polypeptide deformylase [Legionella longbeachae NSW150] gi|269989778|gb|EEZ96032.1| peptide deformylase [Legionella longbeachae D-4968] gi|288857151|emb|CBJ10967.1| putative polypeptide deformylase [Legionella longbeachae NSW150] Length = 170 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 101/160 (63%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ PD LR V++P+ + + LI++M E MY+ G+GLAA QIG+ RL VID+ Sbjct: 6 ILYLPDARLREVAKPVVHFDDKLQTLIEDMFETMYAAHGVGLAAPQIGIGLRLSVIDIA- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +KN +V INP+II S+ ++EGCLS+P V R+ + V+ +D + I Sbjct: 65 -GDKKNQLVIINPEIIA-SEGEKKFEEGCLSVPGAYDTVIRAEKVIVKALDRTGKPFEIQ 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLLA CLQHE+DH+NG LFID LS LK+ M KK+ K Sbjct: 123 ADGLLAECLQHEIDHMNGKLFIDLLSPLKKAMARKKLEKF 162 >gi|296134589|ref|YP_003641831.1| peptide deformylase [Thiomonas intermedia K12] gi|295794711|gb|ADG29501.1| peptide deformylase [Thiomonas intermedia K12] Length = 168 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L V++P+ ++ + L+ M E MY+++G+GLAA Q+ V R++V+D + Sbjct: 9 YPDPRLYIVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIVMDTSEQ-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P+ INP+I+ S + ++EGCLS+P V R A + VR +D Q + ADG Sbjct: 67 RNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQPFEMDADG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L A C+QHE+DHL G +F+D+LS LKR+ I KM K Sbjct: 127 LTAVCIQHEMDHLMGKVFVDYLSPLKRNRIKTKMLK 162 >gi|313667406|ref|YP_004047690.1| polypeptide deformylase [Neisseria lactamica ST-640] gi|313004868|emb|CBN86294.1| polypeptide deformylase [Neisseria lactamica 020-06] Length = 167 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 YPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVVMDLTED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 67 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 161 >gi|53803080|ref|YP_115237.1| polypeptide deformylase [Methylococcus capsulatus str. Bath] gi|53756841|gb|AAU91132.1| polypeptide deformylase [Methylococcus capsulatus str. Bath] Length = 178 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 3/162 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR+ + P+E + + +D+M E MY+ G+GLAA Q+ V R++VID+ + Sbjct: 9 FPDERLRKKAAPVEVFDDTLRRTVDDMFETMYAAPGVGLAATQVNVHKRILVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P+ INP+++ + + +EGCLS+P V R+ + VR D N + + A+G Sbjct: 67 KDAPLCLINPELLEKQGNGEM-EEGCLSVPGIFEKVPRAESVRVRAQDRNGEFFEMSAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 LLA C+QHE+DHL G LF+DHLS LKR M KK+ K +LR+ Sbjct: 126 LLAVCIQHEMDHLEGKLFLDHLSTLKRQMARKKLQKERRLRE 167 >gi|59802191|ref|YP_208903.1| peptide deformylase [Neisseria gonorrhoeae FA 1090] gi|239997891|ref|ZP_04717815.1| peptide deformylase [Neisseria gonorrhoeae 35/02] gi|240015128|ref|ZP_04722041.1| peptide deformylase [Neisseria gonorrhoeae DGI18] gi|240017578|ref|ZP_04724118.1| peptide deformylase [Neisseria gonorrhoeae FA6140] gi|240081720|ref|ZP_04726263.1| peptide deformylase [Neisseria gonorrhoeae FA19] gi|240116732|ref|ZP_04730794.1| peptide deformylase [Neisseria gonorrhoeae PID18] gi|240118954|ref|ZP_04733016.1| peptide deformylase [Neisseria gonorrhoeae PID1] gi|240124492|ref|ZP_04737448.1| peptide deformylase [Neisseria gonorrhoeae PID332] gi|240129167|ref|ZP_04741828.1| peptide deformylase [Neisseria gonorrhoeae SK-93-1035] gi|260439507|ref|ZP_05793323.1| peptide deformylase [Neisseria gonorrhoeae DGI2] gi|268593743|ref|ZP_06127910.1| peptide deformylase [Neisseria gonorrhoeae 35/02] gi|268597818|ref|ZP_06131985.1| peptide deformylase [Neisseria gonorrhoeae FA19] gi|268602403|ref|ZP_06136570.1| peptide deformylase [Neisseria gonorrhoeae PID18] gi|268604665|ref|ZP_06138832.1| polypeptide deformylase [Neisseria gonorrhoeae PID1] gi|268683123|ref|ZP_06149985.1| polypeptide deformylase [Neisseria gonorrhoeae PID332] gi|268687550|ref|ZP_06154412.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035] gi|75507292|sp|Q5F5P6|DEF_NEIG1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|59719086|gb|AAW90491.1| putative polypeptide deformylase [Neisseria gonorrhoeae FA 1090] gi|268547132|gb|EEZ42550.1| peptide deformylase [Neisseria gonorrhoeae 35/02] gi|268551606|gb|EEZ46625.1| peptide deformylase [Neisseria gonorrhoeae FA19] gi|268586534|gb|EEZ51210.1| peptide deformylase [Neisseria gonorrhoeae PID18] gi|268588796|gb|EEZ53472.1| polypeptide deformylase [Neisseria gonorrhoeae PID1] gi|268623407|gb|EEZ55807.1| polypeptide deformylase [Neisseria gonorrhoeae PID332] gi|268627834|gb|EEZ60234.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035] Length = 167 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E+++ I L+ +M E MY + GIGLAA Q+ V R+VV+DL + Sbjct: 9 YPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVVMDLTED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 67 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 161 >gi|240113996|ref|ZP_04728486.1| peptide deformylase [Neisseria gonorrhoeae MS11] gi|240122199|ref|ZP_04735161.1| peptide deformylase [Neisseria gonorrhoeae PID24-1] gi|240124639|ref|ZP_04737525.1| peptide deformylase [Neisseria gonorrhoeae SK-92-679] gi|254494753|ref|ZP_05107924.1| polypeptide deformylase [Neisseria gonorrhoeae 1291] gi|268600061|ref|ZP_06134228.1| polypeptide deformylase [Neisseria gonorrhoeae MS11] gi|268683213|ref|ZP_06150075.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679] gi|226513793|gb|EEH63138.1| polypeptide deformylase [Neisseria gonorrhoeae 1291] gi|268584192|gb|EEZ48868.1| polypeptide deformylase [Neisseria gonorrhoeae MS11] gi|268623497|gb|EEZ55897.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679] Length = 161 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E+++ I L+ +M E MY + GIGLAA Q+ V R+VV+DL + Sbjct: 3 YPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVVMDLTED-- 60 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 61 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKFTLEADG 119 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 120 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 155 >gi|170726943|ref|YP_001760969.1| peptide deformylase [Shewanella woodyi ATCC 51908] gi|169812290|gb|ACA86874.1| peptide deformylase [Shewanella woodyi ATCC 51908] Length = 163 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 102/160 (63%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R ++P+ I++ + ID++LE MY TD GIGLAA Q+G + ++VIDL Sbjct: 6 ILTIPDERLKRKAKPVTDISA-VQGFIDDLLETMYHTDDGIGLAATQVGSEHAILVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 R P V INP+I+ +F V +EGCLSIP YRA V R+ + V +D I Sbjct: 65 --PERDQPQVLINPEIVAAEGEF-VGEEGCLSIPGYRAKVARNEKVKVTALDREGTPFEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D LA LQHE+DHLNG++F DHLS+LK+ + +K+SK Sbjct: 122 ETDTFLAIVLQHEMDHLNGVVFTDHLSKLKQQIALRKVSK 161 >gi|59713150|ref|YP_205926.1| peptide deformylase [Vibrio fischeri ES114] gi|197334102|ref|YP_002157326.1| peptide deformylase [Vibrio fischeri MJ11] gi|75506885|sp|Q5E1Q8|DEF_VIBF1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690282|sp|B5FCW6|DEF_VIBFM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|59481251|gb|AAW87038.1| peptide deformylase [Vibrio fischeri ES114] gi|197315592|gb|ACH65039.1| peptide deformylase [Vibrio fischeri MJ11] Length = 170 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 70/150 (46%), Positives = 97/150 (64%), Gaps = 3/150 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDVSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP I S D + +EGCLS+P + V RSA ++V +D + Sbjct: 66 T--RDEPMVLINPVITQKSGDDGI-EEGCLSVPGAKGLVPRSAEVSVSALDRDGNEFSFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 AD LLA C+QHELDHL+G LF+D+LS LKR Sbjct: 123 ADDLLAICVQHELDHLDGKLFVDYLSPLKR 152 >gi|255067832|ref|ZP_05319687.1| peptide deformylase [Neisseria sicca ATCC 29256] gi|255047923|gb|EET43387.1| peptide deformylase [Neisseria sicca ATCC 29256] Length = 193 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 35 YPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVVMDLTED-- 92 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 93 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 151 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 152 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 187 >gi|323493448|ref|ZP_08098570.1| peptide deformylase [Vibrio brasiliensis LMG 20546] gi|323312271|gb|EGA65413.1| peptide deformylase [Vibrio brasiliensis LMG 20546] Length = 167 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 108/159 (67%), Gaps = 5/159 (3%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAH 68 PDP L+ + ++ ++S + LID+ML+ +Y+TD GIGLAA+Q+G +V+IDL ++ Sbjct: 10 PDPRLKVTAEKVQDVSS-VQTLIDDMLDTLYATDNGIGLAAIQVGRKEAVVIIDLSEN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P++ +NP++++ SD ++ QEGCLS+PDY ADV+R + V +D + +D Sbjct: 67 RDEPLILVNPEVVSGSDK-AMGQEGCLSVPDYYADVERFTSVVVSALDREGNQITLESDD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LA +QHE+DHL+G LFID+LS LKR M KK+ K ++ Sbjct: 126 FLAIVMQHEIDHLSGNLFIDYLSPLKRQMAMKKVKKYLK 164 >gi|119896391|ref|YP_931604.1| peptide deformylase [Azoarcus sp. BH72] gi|119668804|emb|CAL92717.1| probable peptide deformylase [Azoarcus sp. BH72] Length = 167 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 102/160 (63%), Gaps = 3/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L R + P++ ++ D+ LID+M E MY GIGLAA Q+ V R+VVID+ Sbjct: 5 PILRYPDPRLHRRAAPVDTVDDDVRKLIDDMAETMYEAPGIGLAATQVDVHRRVVVIDIS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + M INP+I+ D V +EGCLS+P V R+ +TVR +D N + Sbjct: 65 ED--KSGLMALINPQILE-RDGEQVCEEGCLSVPGVYEKVTRAERVTVRALDRNGHPFEV 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHE+DHL+G +F+++LS LK I K++K Sbjct: 122 AAEGLLAVCIQHEIDHLDGKVFVEYLSPLKLGRIKSKLAK 161 >gi|297250811|ref|ZP_06934289.1| peptide deformylase [Neisseria polysaccharea ATCC 43768] gi|296837967|gb|EFH21905.1| peptide deformylase [Neisseria polysaccharea ATCC 43768] Length = 181 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 98/156 (62%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E+++ + L+ +M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 23 YPDERLHTVAKPVEQVDGRVRKLVADMFETMYEARGIGLAATQVDVHERVVVMDLTED-- 80 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 81 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 139 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 140 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 175 >gi|329894842|ref|ZP_08270642.1| Peptide deformylase [gamma proteobacterium IMCC3088] gi|328922736|gb|EGG30070.1| Peptide deformylase [gamma proteobacterium IMCC3088] Length = 178 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 95/156 (60%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR +++P+ ++ LI +M E MY GIGLAA Q+ V R++VID+ + Sbjct: 19 FPDPRLRTIAKPVAEVTDQHRALIKDMFETMYQAPGIGLAATQVNVHERILVIDVSE--D 76 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P VFINP++ + Y EGCLS+P + V R I VR ++ + G Sbjct: 77 KSEPRVFINPEVEVLDPELGEYDEGCLSVPGFYDTVCRPQRIKVRALNEQGEAYEEELGG 136 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K Sbjct: 137 LLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEK 172 >gi|212695671|ref|ZP_03303799.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM 7454] gi|212677344|gb|EEB36951.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM 7454] Length = 162 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/139 (46%), Positives = 97/139 (69%), Gaps = 4/139 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR+ S+ ++++N I L+D+M E MY DG+GLAA Q+G+L R++V+D++D Sbjct: 20 DPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIVVDIRDE---D 76 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP+II D V EGCLS+P++ A+VKR A + V+Y+D N + + I A+GL Sbjct: 77 GLIKLVNPEIIE-KDGEQVGVEGCLSVPNFNANVKRPAHVIVKYLDENGEEKKIEAEGLK 135 Query: 131 ATCLQHELDHLNGILFIDH 149 A L HE+DHLNG+LFID+ Sbjct: 136 AVALCHEIDHLNGVLFIDN 154 >gi|291285975|ref|YP_003502791.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] gi|290883135|gb|ADD66835.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] Length = 175 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 100/158 (63%), Gaps = 1/158 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD +LR + P++ I+ I L+DNM+E M++ G+GLAA Q+G+ RL+VID + Sbjct: 8 FPDKVLRIKAEPVDSIDESITELLDNMVETMHARSGVGLAAPQVGISKRLIVIDTSAGEN 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + INP+II+ ++ V +EGCLSIP V+R+ +TV+ MD N + + A+G Sbjct: 68 EGMLLRVINPEIIS-AEGEQVGEEGCLSIPGEYEPVRRAEKVTVKAMDENGKPYTMEAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 LA QHE+DHL+G+LFID L K+D + K + + + Sbjct: 127 FLARAFQHEIDHLDGVLFIDRLPSYKKDTLKKTIKRRI 164 >gi|90415408|ref|ZP_01223342.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207] gi|90332731|gb|EAS47901.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207] Length = 168 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR V++P+ +++ I LI +M + M GIGLAA QI V R++V++L + Sbjct: 9 FPDPRLRTVAKPVAEVDETIKRLIADMFDTMKDAQGIGLAATQIDVHLRVIVMNLGEDD- 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P VFINP+I + Y+EGCLS+P + V R A + +R +D + A G Sbjct: 68 -IGPRVFINPEIEPLDESVDPYEEGCLSVPGFYEKVDRPAHVVIRALDGEGKAFKEEARG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHL G LF+D+LS KR I KK+ K+ Sbjct: 127 LLAVCIQHEIDHLEGKLFVDYLSPFKRQRIRKKLEKI 163 >gi|218778408|ref|YP_002429726.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01] gi|254767578|sp|B8FHH0|DEF_DESAA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|218759792|gb|ACL02258.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01] Length = 172 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 69/164 (42%), Positives = 106/164 (64%), Gaps = 2/164 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P PIL + + IE I+ D++ L+++M E +Y G+GLAAVQ+GV ++V D+ + Sbjct: 6 IVTYPAPILGKPCKLIEDIDEDLVCLVEDMTETLYDAPGLGLAAVQVGVDKAMLVYDVAE 65 Query: 66 HAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + ++ V INPKI+ + EGCLS+P++RADV R A +TV +D + Sbjct: 66 DENSESTGLKVLINPKIVHTEGKVTSENEGCLSVPEFRADVPRFACVTVEGVDHEGKPVK 125 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A+GLLA LQHE+DHL G LFID +S LKR M ++++K ++ Sbjct: 126 IDAEGLLAIVLQHEIDHLEGKLFIDRISSLKRSMYKRRVAKALK 169 >gi|157964561|ref|YP_001499385.1| polypeptide deformylase [Rickettsia massiliae MTU5] gi|157844337|gb|ABV84838.1| Polypeptide deformylase [Rickettsia massiliae MTU5] Length = 189 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 16 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 75 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 76 N-NKSSPIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 134 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG +F+D+LS+LKRD + KKM K ++L Sbjct: 135 AEGFLATVIQHEIDYLNGKIFLDYLSKLKRDTLLKKMLKHIKL 177 >gi|91790468|ref|YP_551420.1| peptide deformylase [Polaromonas sp. JS666] gi|91699693|gb|ABE46522.1| peptide deformylase [Polaromonas sp. JS666] Length = 173 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 66/164 (40%), Positives = 105/164 (64%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L +++P+ +++ + L +M + MY GIGLAA Q+ V RL+V Sbjct: 1 MTQLTILRYPDPRLHTIAKPVGAVDARLRQLASDMFDTMYEAAGIGLAATQVDVHERLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I+ S + V EGCLS+P V+RS + V+ +D + + Sbjct: 61 IDVSED--RDQPLVLINPEILWASPETRVGDEGCLSVPGIYDGVERSVAVKVQALDLDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q+ A+G+LA C+QHE+DHL G +F+++LS LKR+ I KM K Sbjct: 119 LQVHAAEGMLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIK 162 >gi|114777061|ref|ZP_01452081.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1] gi|114552582|gb|EAU55042.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1] Length = 180 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 109/180 (60%), Gaps = 14/180 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++I PD L +VSRP+E ++ ++ LI +M + MY G+GLAA Q+G L R+ Sbjct: 1 MAVREILIHPDDRLVQVSRPVEFPLSDEVKELIRDMADTMYDAPGVGLAAPQVGELLRIA 60 Query: 60 VID--LQDHAHRKNP---------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 V D +D R + V+INP+ + SD+ ++EGCLS+P+ DV R A Sbjct: 61 VTDTVWRDKEVRHDGDLPGGHRELKVWINPEFLWKSDEMETWEEGCLSVPETWGDVSRPA 120 Query: 109 FITVRYMDCNA-QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +R+ D + QH+ + DG A LQHE DHL+G LFID+LS LKR MITKKM KL + Sbjct: 121 ALRLRWFDEHGVQHEQDF-DGFQAVALQHEFDHLDGKLFIDYLSPLKRRMITKKMKKLYK 179 >gi|212635128|ref|YP_002311653.1| peptide deformylase [Shewanella piezotolerans WP3] gi|212556612|gb|ACJ29066.1| Formylmethionine deformylase [Shewanella piezotolerans WP3] Length = 163 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 101/160 (63%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R + P++ I++ + ID+++E MY TD GIGLAA Q+G L+ ++VIDL Sbjct: 6 ILTIPDVRLKRKAEPVKDIDA-VQGFIDDLIETMYDTDDGIGLAATQVGSLHAILVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R PMV INP+I+ +F +EGCLSIP YRA V R + V +D Q I Sbjct: 65 EE--RDQPMVLINPEIVETRGEFQ-GEEGCLSIPGYRAKVNRHEGVKVTALDRTGQAFEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D LA LQHE+DHL GI+F DHLS LK+ + KK+ K Sbjct: 122 DTDEFLAIVLQHEMDHLKGIVFTDHLSMLKQQIALKKVKK 161 >gi|187476716|ref|YP_784740.1| peptide deformylase [Bordetella avium 197N] gi|115421302|emb|CAJ47807.1| peptide deformylase [Bordetella avium 197N] Length = 170 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 63/160 (39%), Positives = 105/160 (65%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P+ ++ I L+ +M E MY G+GLAA Q+ V R++VID+ Sbjct: 5 PILRYPDPRLHKVAKPVAVVDDRIRQLVKDMAETMYDAPGVGLAATQVDVHERVIVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + + INP+I S++ VY+EGCLS+P +VKR+A I + +D + + Sbjct: 65 EDGNELRAL--INPEITWMSEELQVYEEGCLSVPGIYDEVKRAARIRCKALDTDGKVFEF 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHE+DHL+G +F+++LS LK++ I ++ K Sbjct: 123 EAEGLLAVCVQHEIDHLDGKVFVEYLSVLKQNRIKTRLKK 162 >gi|238650243|ref|YP_002916094.1| polypeptide deformylase [Rickettsia peacockii str. Rustic] gi|238624341|gb|ACR47047.1| polypeptide deformylase [Rickettsia peacockii str. Rustic] Length = 183 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYTPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIARAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 N-NKSSPIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELS 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG F+D+LS+LKRD++ KKM K ++L Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDILLKKMLKHIKL 171 >gi|325849091|ref|ZP_08170583.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480336|gb|EGC83399.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 153 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/139 (46%), Positives = 97/139 (69%), Gaps = 4/139 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR+ S+ ++++N I L+D+M E MY DG+GLAA Q+G+L R++V+D++D Sbjct: 11 DPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIVVDIRDE---D 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP+II D V EGCLS+P++ A+VKR A + V+Y+D N + + I A+GL Sbjct: 68 GLIKLVNPEIIE-KDGEQVGVEGCLSVPNFNANVKRPAHVIVKYLDENGEEKKIEAEGLK 126 Query: 131 ATCLQHELDHLNGILFIDH 149 A L HE+DHLNG+LFID+ Sbjct: 127 AVALCHEIDHLNGVLFIDN 145 >gi|3023625|sp|P94601|DEF_FREDI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1772503|emb|CAA71353.1| polypeptide deformylase [Tolypothrix sp. PCC 7601] Length = 187 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 64/140 (45%), Positives = 93/140 (66%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I K++ ++ LI +ML+ MYS DGIGLAA Q+G+ +L+VIDL+ Sbjct: 24 DRVLRQPAKRIAKVDDELRQLIRDMLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPDNPAN 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP I S + V QEGCLSIP+ DVKR + + Y D N + + + A LL Sbjct: 84 PPLVLINPTIKQVSKEICVAQEGCLSIPNVYMDVKRPEVVEIAYKDENGRPKTLKATDLL 143 Query: 131 ATCLQHELDHLNGILFIDHL 150 A C+QHE+DHLNG++F+D + Sbjct: 144 ARCIQHEMDHLNGVVFVDRV 163 >gi|116747597|ref|YP_844284.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB] gi|158512342|sp|A0LEJ7|DEF_SYNFM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116696661|gb|ABK15849.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB] Length = 170 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/149 (44%), Positives = 95/149 (63%), Gaps = 1/149 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDPILR+ + +E I+ ++ LID+M E MY GIGLAA Q+G L+V+DLQ Sbjct: 9 YPDPILRQKAASVENIDEALIKLIDDMTETMYEAPGIGLAANQVGRSLSLIVVDLQRQDE 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +V INP+I+ + + ++EGCLS+P+Y + VKR A + VR + + I A G Sbjct: 69 EHGLIVLINPQIVATQGEIT-WEEGCLSVPEYFSAVKRHAEVVVRGYGRDGKEMEIQAGG 127 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDM 157 LLA LQHE+DHL G LFID L+ + RD+ Sbjct: 128 LLAVALQHEIDHLEGRLFIDRLNPITRDI 156 >gi|300871518|ref|YP_003786391.1| peptide deformylase [Brachyspira pilosicoli 95/1000] gi|300689219|gb|ADK31890.1| peptide deformylase [Brachyspira pilosicoli 95/1000] Length = 177 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/165 (43%), Positives = 101/165 (61%), Gaps = 9/165 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M++K LVI+ D L+ S +E ++ +I+ LID+M E MY +G+GLAAVQ+GVL R++V Sbjct: 1 MIRK-LVIYGDDRLKEKSSYVENVDEEILTLIDDMFETMYKANGVGLAAVQVGVLKRVIV 59 Query: 61 IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I + D P + INP+II +D + +EGCLS P +V R I V+Y+D Sbjct: 60 ISVPDFDDETKPDFKLALINPEIIWHGEDTEILEEGCLSFPKISDEVARYKEIKVKYIDT 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-----RLKRDM 157 + QI+ A +A LQHE+DH NGI FID L RLK+D+ Sbjct: 120 ENKEQILDAKDYIAKVLQHEIDHTNGITFIDRLESYQKRRLKKDL 164 >gi|34580422|ref|ZP_00141902.1| polypeptide deformylase [Rickettsia sibirica 246] gi|229586763|ref|YP_002845264.1| Polypeptide deformylase [Rickettsia africae ESF-5] gi|28261807|gb|EAA25311.1| polypeptide deformylase [Rickettsia sibirica 246] gi|228021813|gb|ACP53521.1| Polypeptide deformylase [Rickettsia africae ESF-5] Length = 183 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 N-NKSSPIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG F+D+LS+LKRD + KKM K ++L Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKKMLKHIKL 171 >gi|157834784|pdb|2DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr, 20 Structures Length = 147 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 63/143 (44%), Positives = 102/143 (71%), Gaps = 3/143 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 8 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 66 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA C+QHE+DHL G LF+D+LS Sbjct: 125 LLAICIQHEMDHLVGKLFMDYLS 147 >gi|256830603|ref|YP_003159331.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028] gi|256579779|gb|ACU90915.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028] Length = 170 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 105/167 (62%), Gaps = 1/167 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +V +P+P+L + + P+ +I +I L MLE+MY+ GIGLAA Q+ RL+ +DL Sbjct: 3 RTIVTYPNPVLAKKAAPVVEITEEIRALAAEMLEIMYADKGIGLAAPQVAESIRLITVDL 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 R++P VF+NP + + +EGCLS+ YR VKR+ + + D + + Sbjct: 63 SGPDKREDPHVFVNPVLSNLEGEVE-SEEGCLSVVGYRTTVKRAERLHLSATDLDGKPVE 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD L+A CLQHE+DHL+G+LFID +S+LKR + +K+ K ++ ++ Sbjct: 122 MDADDLMAICLQHEVDHLDGVLFIDKISKLKRTLYERKLKKWLKEKN 168 >gi|157830807|pdb|1DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr, 9 Structures gi|256599481|pdb|2KMN|A Chain A, Solution Structure Of Peptide Deformylase Complexed With Actinonin Length = 147 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 63/143 (44%), Positives = 102/143 (71%), Gaps = 3/143 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 8 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 66 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA C+QHE+DHL G LF+D+LS Sbjct: 125 LLAICIQHEMDHLVGKLFMDYLS 147 >gi|258622314|ref|ZP_05717340.1| peptide deformylase [Vibrio mimicus VM573] gi|258624834|ref|ZP_05719762.1| peptide deformylase [Vibrio mimicus VM603] gi|262164774|ref|ZP_06032512.1| peptide deformylase [Vibrio mimicus VM223] gi|262173015|ref|ZP_06040692.1| peptide deformylase [Vibrio mimicus MB-451] gi|258582832|gb|EEW07653.1| peptide deformylase [Vibrio mimicus VM603] gi|258585638|gb|EEW10361.1| peptide deformylase [Vibrio mimicus VM573] gi|261890373|gb|EEY36360.1| peptide deformylase [Vibrio mimicus MB-451] gi|262027154|gb|EEY45821.1| peptide deformylase [Vibrio mimicus VM223] Length = 168 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 109/165 (66%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP LR S+ + + S + LID++L+ +Y+TD GIGLAA Q+G +VVIDL Sbjct: 6 ILTAPDPRLRVQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D+ R PMV INPK+++ S+ + QEGCLS+PDY ADV+R + V +D + + I Sbjct: 65 DN--RDEPMVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDRDGKPLKI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 122 ESSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|152981416|ref|YP_001353370.1| formylmethionine deformylase [Janthinobacterium sp. Marseille] gi|151281493|gb|ABR89903.1| formylmethionine deformylase [Janthinobacterium sp. Marseille] Length = 173 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/164 (40%), Positives = 105/164 (64%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L V+ P+++I DI L+ +M + MY+ DGIGLAA Q+ V +++V Sbjct: 1 MTRLSVLQYPDPRLYTVAEPVQQITQDIRRLVADMTQTMYALDGIGLAATQVDVHLQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R V INP I+ + Y+EGCLS+PD V+R+A+I VR +D + + Sbjct: 61 IDVSEKQNRLQ--VLINPTIVKMGGK-AEYEEGCLSVPDVFESVRRAAWIHVRALDLDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A+GL A C+QHE+DHL G++F++HLS + I +SK Sbjct: 118 TIDVQAEGLKAMCIQHEMDHLQGMVFVEHLSPTNQRRILNSLSK 161 >gi|189499854|ref|YP_001959324.1| peptide deformylase [Chlorobium phaeobacteroides BS1] gi|238692288|sp|B3EPG5|DEF_CHLPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189495295|gb|ACE03843.1| peptide deformylase [Chlorobium phaeobacteroides BS1] Length = 185 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 70/163 (42%), Positives = 103/163 (63%), Gaps = 3/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + D +LRR ++P+++ ++ + LI NMLE M + +GIGLAA Q+GV RL+V+DL Sbjct: 4 PINTYSDEVLRRKAKPLKESDAQLEELISNMLESMRNAEGIGLAAPQVGVSLRLIVVDLS 63 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + +PMV INP I++ F+ +EGCLSIPD R DV R + I ++Y D N + Sbjct: 64 LAEGYEAASPMVVINPHILSVKS-FNSMEEGCLSIPDVRGDVVRPSAIQLKYRDRNFEEC 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 I D L A +QHE+DHL+G LF+D + R R I K++ L Sbjct: 123 IGEFDRLAARVIQHEIDHLDGTLFVDRMQRRDRRKIQKELDAL 165 >gi|254251081|ref|ZP_04944399.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] gi|124893690|gb|EAY67570.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] Length = 167 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+I+ SD VY+EGCLS+P +V+R + VR ++ N + + + Sbjct: 67 -KNELRAFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDRVRVRALNENGETFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 126 GLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKL 163 >gi|209693699|ref|YP_002261627.1| peptide deformylase [Aliivibrio salmonicida LFI1238] gi|238058218|sp|B6EP21|DEF_ALISL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|208007650|emb|CAQ77760.1| peptide deformylase (polypeptide deformylase) [Aliivibrio salmonicida LFI1238] Length = 169 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 70/150 (46%), Positives = 96/150 (64%), Gaps = 3/150 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FPD LR V++P++ + +I ID+M+E MY +GIGLAA Q+ R+VVID+ + Sbjct: 6 VLTFPDDRLRTVAKPVKTVTPEIQTFIDDMIETMYDEEGIGLAATQVDFHQRIVVIDVSE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R PMV INP I S D + +EGCLS+P + V RSA ++V +D + Sbjct: 66 T--RDEPMVLINPVITQKSGDDGI-EEGCLSVPGAKGMVPRSAEVSVTALDRDGNEFSFD 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 AD LLA C+QHELDHL G LF+D+LS LKR Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKR 152 >gi|256544906|ref|ZP_05472277.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170] gi|256399405|gb|EEU13011.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170] Length = 154 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/139 (47%), Positives = 96/139 (69%), Gaps = 4/139 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR+ S+ ++++N I L+D+M E MY DG+GLAA Q+G+L R++V+D++D Sbjct: 11 DPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIVVDVRDE---D 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP+II D V EGCLS+P++ A+VKR A + V+Y+D N + I A+GL Sbjct: 68 GLIKLVNPEIIE-KDGEQVGVEGCLSVPNFNANVKRPAHVVVKYLDENGDEKKIEAEGLK 126 Query: 131 ATCLQHELDHLNGILFIDH 149 A L HE+DHLNGILFID+ Sbjct: 127 AVALCHEIDHLNGILFIDN 145 >gi|226310454|ref|YP_002770348.1| peptide deformylase [Brevibacillus brevis NBRC 100599] gi|226093402|dbj|BAH41844.1| peptide deformylase [Brevibacillus brevis NBRC 100599] Length = 171 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M K ++ F DPILR+V++P+E++N L+D M E +Y+ DG GLAA QIG+L R+V Sbjct: 1 MAVKQILPFGDPILRKVAKPVEELNEKTFKLLDEMAETLYAADGRAGLAAPQIGILRRVV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D D + INP+II S + + E CLS P Y +VKR+ + V+ ++ Sbjct: 61 VMDCGD-----GLIELINPEIIERSGE-QIGMEACLSFPGYYGNVKRAEHVKVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ DG LA C+QHE+DHL+GILF+DH+ Sbjct: 115 EEMILAGDGFLAVCMQHEIDHLDGILFVDHVQE 147 >gi|261252741|ref|ZP_05945314.1| peptide deformylase [Vibrio orientalis CIP 102891] gi|260936132|gb|EEX92121.1| peptide deformylase [Vibrio orientalis CIP 102891] Length = 167 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 5/159 (3%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAH 68 PDP L+ + ++ + S + LID+MLE +Y+TD GIGLA+ Q+G +V+IDL + Sbjct: 10 PDPRLKVKAEKVQDL-STVQTLIDDMLETLYATDNGIGLASTQVGRKEAVVIIDLSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P++ +NP++++ SD ++ QEGCLS+PDY ADV+R + V +D + I +D Sbjct: 67 RDEPLILVNPEVVSGSDK-ALGQEGCLSVPDYYADVERFTSVVVSALDREGKPITIESDE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LA +QHE+DHL+G LFID+LS LKR M KK+ K V+ Sbjct: 126 FLAIVMQHEIDHLSGNLFIDYLSPLKRKMAMKKVKKYVK 164 >gi|171319440|ref|ZP_02908545.1| peptide deformylase [Burkholderia ambifaria MEX-5] gi|171095332|gb|EDT40313.1| peptide deformylase [Burkholderia ambifaria MEX-5] Length = 167 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDISEE-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+II SD+ VY+EGCLS+P +V+R + VR ++ + + + Sbjct: 67 -KNELRAFINPEIIWSSDEKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGEAFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163 >gi|254796760|ref|YP_003081596.1| peptide deformylase [Neorickettsia risticii str. Illinois] gi|254590005|gb|ACT69367.1| peptide deformylase [Neorickettsia risticii str. Illinois] Length = 205 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/165 (41%), Positives = 104/165 (63%), Gaps = 13/165 (7%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 LVI PDPIL +VS + ++ + +D+MLE MY GIGLAAVQ+GVL R++V+D+ Sbjct: 26 LVIEPDPILHKVSGNVVGVSDEKREFLDDMLETMYHYTGIGLAAVQVGVLERIIVVDVPP 85 Query: 64 --QDHAHRKN---------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + H+ N P +NP+II FS + EGCLS+P+ ++ R + V Sbjct: 86 DKEWHSSPLNHVGYESSGGPYYLVNPEIIEFSRNLVSADEGCLSLPEQNYEIVRPDAVVV 145 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 +Y++ N + ++ A+G LA C+QHE+DHL+G L++ HLS+LK D+ Sbjct: 146 KYLNYNGEECLLKANGWLARCIQHEVDHLDGKLYVSHLSKLKYDL 190 >gi|186474806|ref|YP_001856276.1| peptide deformylase [Burkholderia phymatum STM815] gi|184191265|gb|ACC69230.1| peptide deformylase [Burkholderia phymatum STM815] Length = 167 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 103/159 (64%), Gaps = 2/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+EK++ I L+ +M E MY+ G+GLAA Q+ V R++VID+ D Sbjct: 9 YPDKRLHKVAKPVEKVDDRIRKLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSDT-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + FINP+I+ SD+ +++EGCLS+P +V+R+ + VR M+ + + +G Sbjct: 67 HEELRAFINPEILWSSDERKIHEEGCLSVPGIYDNVERAEKVRVRAMNEKGETFELDCEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQTRIKSKMKKLAH 165 >gi|220907940|ref|YP_002483251.1| peptide deformylase [Cyanothece sp. PCC 7425] gi|219864551|gb|ACL44890.1| peptide deformylase [Cyanothece sp. PCC 7425] Length = 188 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 2/153 (1%) Query: 3 KKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + PL I D +LR+ + I ++N++ L ML+ MYS DGIGLAA Q+GV +L+V Sbjct: 14 EPPLTIHYLGDRVLRQPCKRISQVNNETRELARTMLQTMYSADGIGLAAPQVGVNKQLIV 73 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ P++ +NP I FS + S+ QEGCLSIP DVKR I V Y D + Sbjct: 74 VDIHPDEAANPPLILVNPVIREFSPEVSLGQEGCLSIPGVYLDVKRPEMIEVAYKDEQGR 133 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 Q++YA GLL+ +QHE+DHL G++F+D + + Sbjct: 134 PQVLYASGLLSRAIQHEIDHLGGVMFVDRVENM 166 >gi|226942060|ref|YP_002797134.1| Def [Laribacter hongkongensis HLHK9] gi|226716987|gb|ACO76125.1| Def [Laribacter hongkongensis HLHK9] Length = 167 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V+RP++ ++ + LID+M E MY+ GIGLAA QI RLVVIDL + Sbjct: 9 YPDERLHTVARPVDVVDDALRRLIDDMAETMYAAHGIGLAATQIDYHRRLVVIDLSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +V INP +IT +VY+EGCLS+P V R+ +TV +D N Q + A+G Sbjct: 67 HDGLLVLINP-VITRKAGETVYEEGCLSVPGIYDKVTRAETVTVEALDRNGQPFSLDAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL+G +F++HLS++K+ I +K+ K Sbjct: 126 LLAICIQHEIDHLDGKVFVEHLSQMKQSRIKQKLKK 161 >gi|34499720|ref|NP_903935.1| peptide deformylase [Chromobacterium violaceum ATCC 12472] gi|39930829|sp|Q7NQ75|DEF_CHRVO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|34105571|gb|AAQ61925.1| Polypeptide deformylase [Chromobacterium violaceum ATCC 12472] Length = 167 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E ++ + ID+M E MY GIGLAA Q+ RLVV+D+ + Sbjct: 9 YPDERLHTVAKPVEVFDAALQQQIDDMFETMYEAKGIGLAATQVDYHRRLVVMDISEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ D +VY+EGCLS+P V R+ + V+ D + + + ADG Sbjct: 67 RDERRVFINPEIVE-KDGETVYEEGCLSVPGIYDKVTRAERVKVKAQDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHLNG++F++ LS++K+ I K+ K Sbjct: 126 LLAICIQHELDHLNGVVFVERLSQMKQQRIKTKLKK 161 >gi|78484538|ref|YP_390463.1| peptide deformylase [Thiomicrospira crunogena XCL-2] gi|123755296|sp|Q31J84|DEF_THICR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78362824|gb|ABB40789.1| peptide deformylase [Thiomicrospira crunogena XCL-2] Length = 169 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V++PD LR V +P+ ++ ++ LID M MY GIGLAA Q+ V RL+V Sbjct: 1 MDKLDIVLYPDEGLREVCKPVPEMTDELDKLIDEMFYTMYDAPGIGLAAPQVAVQQRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + P+ +NP+II + + ++EGCLSIP A V R + I VR MD + + Sbjct: 61 VDISET--KDEPIALLNPEIIKTAGKIT-WEEGCLSIPGIYAKVDRPSDILVRGMDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LLA C+QHE+DHLNG LFIDHLS LKR +K K Sbjct: 118 TIEFEANELLAVCIQHEIDHLNGKLFIDHLSGLKRTRAIQKFKK 161 >gi|67459122|ref|YP_246746.1| polypeptide deformylase [Rickettsia felis URRWXCal2] gi|67004655|gb|AAY61581.1| Polypeptide deformylase [Rickettsia felis URRWXCal2] Length = 183 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ + +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQTLNIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P+VFINP+I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 N-NKSSPIVFINPEITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELE 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG F+D++S+LKRD + KKM K ++L Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYVSKLKRDTLLKKMLKHIKL 171 >gi|163756828|ref|ZP_02163937.1| peptide deformylase [Kordia algicida OT-1] gi|161323217|gb|EDP94557.1| peptide deformylase [Kordia algicida OT-1] Length = 196 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 103/177 (58%), Gaps = 12/177 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V F DP+LR+V++ I ++ L++NM E MY+ G+GLAA Q+G+ RL +ID Sbjct: 4 PIVAFGDPVLRKVAKDITPDYPNLDTLLENMFETMYNAYGVGLAAPQVGLPIRLFMIDAT 63 Query: 65 --------DHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 D RK VFIN KII + + V+ EGCLSIPD R DV R I + Sbjct: 64 GFAEDEELDEEQRKQLEGMKKVFINAKIIERNGEPWVFNEGCLSIPDIREDVFRPESIKI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 YMD N + + DGL A +QHE DH+ GILF D LS LKR ++ +++ + + R Sbjct: 124 EYMDENFEKHVEEYDGLAARVIQHEYDHIEGILFTDKLSALKRRLLKGRLTNISRGR 180 >gi|124007536|ref|ZP_01692241.1| peptide deformylase [Microscilla marina ATCC 23134] gi|123987019|gb|EAY26775.1| peptide deformylase [Microscilla marina ATCC 23134] Length = 183 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 99/165 (60%), Gaps = 3/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DP+L++ + I +D+ L++NM E MY G+GLAA QIG RL VID + Sbjct: 4 PIVAYGDPVLKKKAEEIAP-GTDVSELVENMFETMYEAHGVGLAAPQIGKSLRLFVIDPE 62 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D A + M FINP I+ V++EGCLSIPD R +V R I ++Y D N + Sbjct: 63 PMDEALQNMKMTFINPVILEEEGTEWVFEEGCLSIPDIRENVSRQPKIRIKYFDLNWKEH 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DG+ A +QHE DH+ G+LF D+LS K+ ++ +++K+ + Sbjct: 123 EAEYDGMAARVIQHEYDHIEGVLFTDYLSGFKKRLLKSRLTKISK 167 >gi|167834978|ref|ZP_02461861.1| peptide deformylase [Burkholderia thailandensis MSMB43] Length = 167 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+++ SD VY+EGCLS+P +V+R + VR +D + I + Sbjct: 67 -KNELRVFINPELVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGETFEIDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL Sbjct: 126 GLLAVCIQHEMDHLIGRVFVQYLSPLKQTRIKTKMKKL 163 >gi|170697716|ref|ZP_02888803.1| peptide deformylase [Burkholderia ambifaria IOP40-10] gi|170137331|gb|EDT05572.1| peptide deformylase [Burkholderia ambifaria IOP40-10] Length = 167 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 104/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDISEE-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+II SD+ +Y+EGCLS+P +V+R + VR ++ + + + Sbjct: 67 -KNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGESFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163 >gi|37676994|ref|NP_937390.1| peptide deformylase [Vibrio vulnificus YJ016] gi|39930924|sp|Q7MCQ2|DEF1_VIBVY RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|37201538|dbj|BAC97360.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016] Length = 168 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 73/165 (44%), Positives = 107/165 (64%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP LR S+ + + + + LID++LE +Y TD G+GLAA Q+G +VVIDL Sbjct: 6 ILTAPDPRLRVQSKEVTDVAA-VQTLIDDLLETLYETDNGVGLAAPQVGREEAIVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ R P+V +NPK+++ S+ + QEGCLS+PDY ADV+R + V +D N + I Sbjct: 65 EN--RDEPLVLVNPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDRNGKELRI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K +LR Sbjct: 122 ETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166 >gi|157803421|ref|YP_001491970.1| peptide deformylase [Rickettsia canadensis str. McKiel] gi|166198522|sp|A8EXV2|DEF_RICCK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157784684|gb|ABV73185.1| peptide deformylase [Rickettsia canadensis str. McKiel] Length = 175 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PD L++ S + ++ +D+ML+ MY D GLAAVQ+G+L R++VID++ Sbjct: 5 PIVTAPDERLKQKSHRVLEVTDQTRKFMDDMLKTMYHEDAAGLAAVQVGILKRILVIDIK 64 Query: 65 DHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DH + P F +NP II S++ EGC+S+P R +V R I ++Y+D + Sbjct: 65 DHDPVERPKDFYPLFIVNPDIIDKSEELVTANEGCISVPRQRVEVARPESIKIKYLDYHN 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 125 KQQELEANDWLARVIQHEYDHLEGKLMIDYLSSLKRDVVLRKLKKL 170 >gi|332974243|gb|EGK11176.1| peptide deformylase [Kingella kingae ATCC 23330] Length = 167 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 102/160 (63%), Gaps = 3/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ P+ L V++P+ +++ I L+ +M E MY+ GIGLAA Q+ V R+VVIDL Sbjct: 5 PILTHPNERLHIVAQPVVQVDDRIRTLVQDMAETMYAARGIGLAATQVDVHERVVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + ++ + INP +IT D + Y+EGCLS+P V R+ ITV ++D Q + Sbjct: 65 EEHNQL--LALINP-VITKKDGETTYEEGCLSVPGIYDTVTRAKTITVEFLDTQGNKQSL 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHELDHL G LF+++LS LK++ I K+ K Sbjct: 122 DADGLLAICIQHELDHLAGKLFVEYLSPLKQNRIKTKLKK 161 >gi|262403341|ref|ZP_06079901.1| peptide deformylase [Vibrio sp. RC586] gi|262350840|gb|EEY99973.1| peptide deformylase [Vibrio sp. RC586] Length = 168 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 108/165 (65%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP LR S+ + + S + LID++L+ +Y+TD GIGLAA Q+G +VVIDL Sbjct: 6 ILTAPDPRLRVQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D+ R PMV INPK+++ S+ + QEGCLS+PDY ADV+R + V +D + + I Sbjct: 65 DN--RDEPMVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDRDGKPLRI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|330818688|ref|YP_004362393.1| Polypeptide deformylase [Burkholderia gladioli BSR3] gi|327371081|gb|AEA62437.1| Polypeptide deformylase [Burkholderia gladioli BSR3] Length = 167 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++ ++ I L+D+M E MY+ GIGLAA Q+ V R++VID + Sbjct: 9 YPDKRLHKVAKPVDVVDDRIRKLVDDMAETMYAAPGIGLAATQVDVHERVIVIDTSED-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ SD VY+EGCLS+P +V+R + VR + + Q + + Sbjct: 67 -KNALQVFINPEIVWSSDGKQVYEEGCLSVPGVYDEVERPDHVRVRALGRDGQPFELECE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK++ I KM KL Sbjct: 126 GLLAVCIQHEMDHLMGRVFVQYLSPLKQNRIKSKMKKL 163 >gi|134094837|ref|YP_001099912.1| peptide deformylase [Herminiimonas arsenicoxydans] gi|133738740|emb|CAL61787.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas arsenicoxydans] Length = 177 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 106/164 (64%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PD L +V++ + ++++ I L+++M + MY+ DGIGLAA Q+ V R+++ Sbjct: 1 MSKLAILQYPDERLHKVAQAVTQVDAGIRRLVEDMAQTMYAADGIGLAATQVNVHLRVIL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + R +V INP++I +EGCLS+PD VKR+A+I +R +D N + Sbjct: 61 VDISED--RSQLLVMINPEVIKMGGSAEC-EEGCLSVPDVYEKVKRAAWIRLRALDINGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGL A C+QHELDHL G++F++HLS L + I ++K Sbjct: 118 PFEVQADGLKAMCIQHELDHLQGMVFVEHLSPLNQARILSTLAK 161 >gi|115353233|ref|YP_775072.1| peptide deformylase [Burkholderia ambifaria AMMD] gi|115283221|gb|ABI88738.1| peptide deformylase [Burkholderia ambifaria AMMD] Length = 167 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 104/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDISEE-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+II SD+ +Y+EGCLS+P +V+R + VR ++ + + + Sbjct: 67 -KNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163 >gi|323524423|ref|YP_004226576.1| peptide deformylase [Burkholderia sp. CCGE1001] gi|323381425|gb|ADX53516.1| peptide deformylase [Burkholderia sp. CCGE1001] Length = 167 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++VID+ D AH Sbjct: 9 YPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSD-AH 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + + +G Sbjct: 68 DQ-LLAFINPEIIWSSDEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFELDCEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 127 LLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLAH 165 >gi|325267954|ref|ZP_08134603.1| peptide deformylase [Kingella denitrificans ATCC 33394] gi|324980640|gb|EGC16303.1| peptide deformylase [Kingella denitrificans ATCC 33394] Length = 167 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 3/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ P+ L V++P+ +++ I L+ +M E MY+ GIGLAA Q+ V R+VVIDL Sbjct: 5 PILTHPNERLHIVAKPVAQVDDRIRTLVADMAETMYAAKGIGLAATQVDVHERVVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + ++ + INP IT D + ++EGCLS+P V R+ +TV Y+D + Q + Sbjct: 65 EEHNQL--LALINP-TITKKDGETTFEEGCLSVPGIYDTVSRAETVTVEYLDTEGKPQSL 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHELDHL G LF+++LS LK+ I K+ K Sbjct: 122 DADGLLAICIQHELDHLAGKLFVEYLSPLKQSRIKSKLKK 161 >gi|148285009|ref|YP_001249099.1| peptide deformylase [Orientia tsutsugamushi str. Boryong] gi|158514262|sp|A5CF65|DEF_ORITB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146740448|emb|CAM80944.1| polypeptide deformylase [Orientia tsutsugamushi str. Boryong] Length = 181 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 9/169 (5%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 LV PDPIL++VS P++ +N I LID+MLE MY G+GLAA Q+ V R++V+DL Sbjct: 6 LVTAPDPILKKVSSPVDTVNDSIRQLIDDMLETMYHNHGVGLAAPQVAVSKRIIVLDLSK 65 Query: 66 ---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++ K P+ +NP + S+ +EGCLS+P +V R I V Y+D Sbjct: 66 VDIEEDNITNSEYKYPLFMVNPIVKAISNQTVTAKEGCLSLPKQAIEVSRYHEIQVTYLD 125 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + + A G LA +QHE+DHL+GIL +D+LS LK++ +SK+ Sbjct: 126 YYNKLKTLNAAGWLARAIQHEVDHLDGILLVDYLSNLKKEATLNTLSKI 174 >gi|33591756|ref|NP_879400.1| peptide deformylase [Bordetella pertussis Tohama I] gi|33594959|ref|NP_882602.1| peptide deformylase [Bordetella parapertussis 12822] gi|33599236|ref|NP_886796.1| peptide deformylase [Bordetella bronchiseptica RB50] gi|39931022|sp|Q7VS88|DEF2_BORPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|39931030|sp|Q7W1V3|DEF1_BORPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|39931046|sp|Q7WQS9|DEF1_BORBR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|33565035|emb|CAE39984.1| polypeptide deformylase [Bordetella parapertussis] gi|33571399|emb|CAE44880.1| polypeptide deformylase [Bordetella pertussis Tohama I] gi|33575282|emb|CAE30745.1| polypeptide deformylase [Bordetella bronchiseptica RB50] gi|332381173|gb|AEE66020.1| peptide deformylase [Bordetella pertussis CS] Length = 170 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 100/156 (64%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L + ++P+ ++ I L+ +M + MY G+GLAA Q+ V R+VVID+ + + Sbjct: 9 YPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVVIDVSEEGN 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + V INP+I SD+ Y+EGCLS+P +V+R+A I + +D Q ADG Sbjct: 69 --DLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQPYEFEADG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL+G +F+++LS LK++ I K+ K Sbjct: 127 LLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKK 162 >gi|194291227|ref|YP_002007134.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424] gi|193225062|emb|CAQ71073.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424] Length = 168 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L V++P+ ++ I L+ +M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD+ V++EGCLS+P+ V+R + VR ++ + Sbjct: 61 IDVSET--RDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G +F+++LS LK + I K+ K + R Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERAR 167 >gi|167579358|ref|ZP_02372232.1| peptide deformylase [Burkholderia thailandensis TXDOH] gi|167617459|ref|ZP_02386090.1| peptide deformylase [Burkholderia thailandensis Bt4] gi|257140665|ref|ZP_05588927.1| peptide deformylase [Burkholderia thailandensis E264] Length = 167 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ SD VY+EGCLS+P +V+R + VR +D + + + Sbjct: 67 -KNELRVFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGEPFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL Sbjct: 126 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 163 >gi|51473406|ref|YP_067163.1| peptide deformylase [Rickettsia typhi str. Wilmington] gi|81692314|sp|Q68XG1|DEF_RICTY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|51459718|gb|AAU03681.1| PDF [Rickettsia typhi str. Wilmington] Length = 175 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 103/165 (62%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V PD L++ S+P+ + + +MLE MY+ +G GLAAVQ+GVL R++VID++ Sbjct: 6 IVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNANGAGLAAVQVGVLQRILVIDIKA 65 Query: 66 HAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 H + P F +NP+II S + EGC+S+P+ R +V R + +RY+D + + Sbjct: 66 HDPVERPKDFYPLFIVNPEIIEQSTELVTANEGCISLPEQRIEVMRPESVKIRYLDYHGK 125 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q + A+ LA +QHE DHL G L +D+LS LKRD++ +K+ KL Sbjct: 126 SQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKL 170 >gi|284159413|ref|YP_440687.3| peptide deformylase [Burkholderia thailandensis E264] gi|83652775|gb|ABC36838.1| peptide deformylase [Burkholderia thailandensis E264] Length = 179 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 21 YPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 78 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ SD VY+EGCLS+P +V+R + VR +D + + + Sbjct: 79 -KNELRVFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGEPFELDCE 137 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL Sbjct: 138 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 175 >gi|113869635|ref|YP_728124.1| peptide deformylase [Ralstonia eutropha H16] gi|113528411|emb|CAJ94756.1| formylmethionine deformylase [Ralstonia eutropha H16] Length = 168 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L V++P+ ++ I L+ +M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD+ V++EGCLS+P+ V+R + VR ++ + Sbjct: 61 IDVSET--RDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G +F+++LS LK + I K+ K + R Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERTR 167 >gi|305664803|ref|YP_003861090.1| peptide deformylase [Maribacter sp. HTCC2170] gi|88707925|gb|EAR00164.1| peptide deformylase [Maribacter sp. HTCC2170] Length = 196 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DP+LR+V + IEK + LI+NM E MY+ G+GLAA QIG+ RL ++D Sbjct: 4 PIVAYGDPVLRKVGKEIEKNLPKLDELIENMWETMYNASGVGLAAPQIGLPVRLFLVDAT 63 Query: 65 DHAH--------RKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A RK+ VFIN K+ + + V+ EGCLSIP+ R DV R IT+ Sbjct: 64 PFAEDDELSEKERKDLDGFKKVFINAKMQEETGEDWVFNEGCLSIPEIREDVTRKDTITI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y D N + Q DG+LA +QHE DH+ GILF D LS LK+ ++ +++ + + Sbjct: 124 TYFDENFKKQTENFDGILARIIQHEYDHIEGILFTDKLSSLKKRLLKGRLANISK 178 >gi|123965312|ref|YP_001010393.1| peptide deformylase [Prochlorococcus marinus str. MIT 9515] gi|158512726|sp|A2BU25|DEF_PROM5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123199678|gb|ABM71286.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9515] Length = 203 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 69/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 5 PLVIFP--DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL IF + +LR ++ I K++ D NL +ML+ MYS GIGLAA Q+G+ L+VID Sbjct: 30 PLEIFKLGNDVLRTNAKRIGKVDLDTRNLAKDMLKSMYSAKGIGLAAPQVGISKELLVID 89 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P++ INP+I F + + Y+EGCLSIP +V R + I +R+ D + + Sbjct: 90 INFEDSAAEPLILINPEITAFGNTLNSYEEGCLSIPGVYLNVVRPSTIKLRFSDEMGRPR 149 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHL G+LF+D ++ K D+ T+ + Q++D Sbjct: 150 KMNADGLLARCIQHEVDHLRGVLFVDRVTS-KEDLKTELKKEGFQMKD 196 >gi|157962208|ref|YP_001502242.1| peptide deformylase [Shewanella pealeana ATCC 700345] gi|157847208|gb|ABV87707.1| peptide deformylase [Shewanella pealeana ATCC 700345] Length = 163 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R + P+ I S + ID+++E MY TD GIGLAA Q+G L+ ++VIDL Sbjct: 6 ILTIPDERLKRKAVPVTDIES-VQGFIDDLIETMYDTDDGIGLAATQVGSLHAILVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R PMV INP+I+ ++ +EGCLSIP YRA V R + V +D + I Sbjct: 65 EE--RDQPMVLINPEIVESRGEYQ-GEEGCLSIPGYRAKVNRHEGVKVSALDRQGKAFEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D LA LQHE+DHLNG++F DHLS LK+ + KK+ K Sbjct: 122 DTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKK 161 >gi|152981308|ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium sp. Marseille] gi|151281385|gb|ABR89795.1| polypeptide deformylase [Janthinobacterium sp. Marseille] Length = 178 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 98/157 (62%), Gaps = 4/157 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HA 67 +PDP L +V++P+ + I L+ +M E MY G+GLAA Q+ V +++VID + H Sbjct: 9 YPDPRLHKVAKPVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIVIDTSETHT 68 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + +INP+II S + VY EGCLS+P V+R A + VR D + + + AD Sbjct: 69 ELR---AYINPEIIWASPEMQVYDEGCLSVPGVYDGVERHAKVKVRAFDADGKQFELEAD 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 GLLA C+QHE+DHL G +F+++LS LKR+ I KM K Sbjct: 126 GLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLK 162 >gi|218887129|ref|YP_002436450.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758083|gb|ACL08982.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 184 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 95/160 (59%), Gaps = 5/160 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L I +I +I L +M E MY DGIGLAA Q+G RL+V+D+ Sbjct: 8 YPDPRLAVECEDITEITDEIRQLAADMAETMYRQDGIGLAAPQVGEHCRLIVVDVSGPEK 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQHQIIYAD 127 R+ M F+NP++ + D +EGCLS+P YRA V RS + + D + + AD Sbjct: 68 REALMTFVNPRL-ELTGDKVDSEEGCLSVPGGYRATVTRSDTVRLTARDLDGNEVCMDAD 126 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKR---DMITKKMSK 164 GLLA CLQHE+DHL G LFIDH+SRLKR D KKM K Sbjct: 127 GLLAVCLQHEVDHLKGTLFIDHISRLKRTLYDSRVKKMQK 166 >gi|124385914|ref|YP_001028237.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|254203663|ref|ZP_04910023.1| polypeptide deformylase [Burkholderia mallei FMH] gi|124293934|gb|ABN03203.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|147745175|gb|EDK52255.1| polypeptide deformylase [Burkholderia mallei FMH] Length = 216 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 58 YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 115 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + + + Sbjct: 116 -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGESFELDCE 174 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL Sbjct: 175 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 212 >gi|325526701|gb|EGD04225.1| peptide deformylase [Burkholderia sp. TJI49] Length = 167 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+II SD VY+EGCLS+P +V+R + VR ++ + + + Sbjct: 67 -KNELRAFINPEIIWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKL 163 >gi|78067947|ref|YP_370716.1| peptide deformylase [Burkholderia sp. 383] gi|77968692|gb|ABB10072.1| peptide deformylase [Burkholderia sp. 383] Length = 167 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+I+ SD+ +Y+EGCLS+P +V+R + VR ++ + + + Sbjct: 67 -KNELRAFINPEIVWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163 >gi|172062105|ref|YP_001809757.1| peptide deformylase [Burkholderia ambifaria MC40-6] gi|171994622|gb|ACB65541.1| peptide deformylase [Burkholderia ambifaria MC40-6] Length = 167 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDISEE-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+II SD+ +Y+EGCLS+P +V+R + VR ++ + + + Sbjct: 67 -KNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163 >gi|15604081|ref|NP_220596.1| peptide deformylase [Rickettsia prowazekii str. Madrid E] gi|6225256|sp|Q9ZDV8|DEF_RICPR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|3860772|emb|CAA14673.1| METHIONYL-TRNA DEFORMYLASE (def) [Rickettsia prowazekii] gi|292571805|gb|ADE29720.1| Polypeptide deformylase [Rickettsia prowazekii Rp22] Length = 175 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 65/165 (39%), Positives = 103/165 (62%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V PD L++ S+P+ + + +MLE MY+ DG GLAAVQ+G+L R++VID+++ Sbjct: 6 IVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNADGAGLAAVQVGILLRILVIDIKE 65 Query: 66 HAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P F +NP+II S + EGC+S+P R +V R + +RY+D + + Sbjct: 66 YDPVERPKDFYPLFIVNPEIIEKSTELVTANEGCISLPKQRIEVTRPESVKIRYLDYHGK 125 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q + A+ LA +QHE DHL G L +D+LS LKRD++ +K+ KL Sbjct: 126 SQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKL 170 >gi|319790017|ref|YP_004151650.1| peptide deformylase [Thermovibrio ammonificans HB-1] gi|317114519|gb|ADU97009.1| peptide deformylase [Thermovibrio ammonificans HB-1] Length = 177 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--D 65 I+PD L+ ++ +E+ N ++++L++ M E MY G+GLAA Q+GVL R++++DL+ Sbjct: 6 IYPDEALKSKAQKVEEFNQELVDLVNGMFETMYKRGGVGLAANQVGVLKRVLILDLKAGT 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 KNP+V +NP+I+ S+ V +EGCLS+P VKR+ ++ V+ + + + I Sbjct: 66 EEQGKNPIVLVNPEIVA-SEGEVVKEEGCLSLPGLYRKVKRAQWVKVKAQNLDGEEIEIE 124 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +GLLA LQHE+DHLNG++FID LS L++ + +K KL Sbjct: 125 GEGLLARALQHEIDHLNGVVFIDRLSPLQKRLALEKFKKL 164 >gi|74316032|ref|YP_313772.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259] gi|74055527|gb|AAZ95967.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC 25259] Length = 177 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 100/156 (64%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++P+E +++ I L+D+M E MY+ GIGLAA Q+ V R+VVID + Sbjct: 9 YPDSRLHTVAKPVEAVDARIRKLVDDMAETMYAAPGIGLAATQVNVHERVVVIDTSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ S +EGCLS+P V R+ +TVR +D + + + ADG Sbjct: 67 RDALRVFINPEIVAQSGREE-SEEGCLSVPGVFDRVTRAERVTVRALDRDGKPFELEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL G +F+D+LS LKR+ I K+ K Sbjct: 126 LLAVCIQHELDHLAGKVFVDYLSPLKRNRIKTKLLK 161 >gi|297537405|ref|YP_003673174.1| peptide deformylase [Methylotenera sp. 301] gi|297256752|gb|ADI28597.1| peptide deformylase [Methylotenera sp. 301] Length = 166 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 103/159 (64%), Gaps = 3/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +V++P++++++ I LID+M E MY GIGLAA Q+ +L++ID + Sbjct: 9 YPDPRLHKVAKPVKEVDASIRRLIDDMRETMYDAPGIGLAATQVDQHIQLLIIDTSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + + VFINPKII S Y+EGCLS+P V R+ +TV +D N + + A+G Sbjct: 67 KDHLQVFINPKIIEKSG-VQDYEEGCLSVPGVYETVTRAEKVTVEALDYNGKPFTLKAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LL+ C+QHE+DHL G +F+++LS LKR I KM KL + Sbjct: 126 LLSICIQHEMDHLLGKVFVEYLSPLKRSRIKNKMLKLTR 164 >gi|73543090|ref|YP_297610.1| peptide deformylase [Ralstonia eutropha JMP134] gi|72120503|gb|AAZ62766.1| peptide deformylase [Ralstonia eutropha JMP134] Length = 168 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L V++P+++++ I L+ +M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAKLDILTYPDPRLHTVAKPVKEVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD+ V++EGCLS+P+ V+R + VR ++ + Sbjct: 61 IDVSET--RDALQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G +F+++LS LK++ I K+ K + R Sbjct: 119 TFELDADDLLAVCIQHEMDHLLGKVFVEYLSPLKQNRIKSKLHKRERAR 167 >gi|269215460|ref|ZP_06159314.1| peptide deformylase [Slackia exigua ATCC 700122] gi|269130947|gb|EEZ62022.1| peptide deformylase [Slackia exigua ATCC 700122] Length = 187 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 86/144 (59%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PDP LR+V + + + L M + MY+ +G GLAA Q+GVL RL+VID Sbjct: 13 VLAYPDPTLRQVCEDCDPADKSLRKLARRMAKTMYADNGCGLAAPQVGVLKRLIVIDCDQ 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + KNP+ +NP +I V +EGCLS+P ++R A+ VRY D N + II Sbjct: 73 DSGAKNPITLLNPTVIETRGPEVVEEEGCLSVPGITVPIRRPAYAIVRYTDLNGEDWIIE 132 Query: 126 ADGLLATCLQHELDHLNGILFIDH 149 DGLLA CLQHE+DHLNGI + Sbjct: 133 GDGLLARCLQHEIDHLNGITLFES 156 >gi|134284113|ref|ZP_01770807.1| polypeptide deformylase [Burkholderia pseudomallei 305] gi|76578939|gb|ABA48414.1| peptide deformylase [Burkholderia pseudomallei 1710b] gi|134244565|gb|EBA44669.1| polypeptide deformylase [Burkholderia pseudomallei 305] Length = 201 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 43 YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 100 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + + + Sbjct: 101 -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFELDCE 159 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL Sbjct: 160 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 197 >gi|15892597|ref|NP_360311.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] gi|23396566|sp|Q92HU7|DEFL_RICCN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|15619763|gb|AAL03212.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] Length = 183 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 106/163 (65%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 N-NKSSPIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+++LNG F+D LS+LKRD + KKM K ++L Sbjct: 129 AEGFLATVIQHEIEYLNGKTFLDSLSKLKRDTLLKKMLKHIKL 171 >gi|160947099|ref|ZP_02094266.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270] gi|158446233|gb|EDP23228.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270] Length = 164 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 69/138 (50%), Positives = 91/138 (65%), Gaps = 4/138 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR+ +R +E I+ I NL+++M E MY++DG+GLA QIG+L RLV ID+ D Sbjct: 11 DPVLRKKARKVEVIDDKIKNLLEDMAETMYNSDGVGLACPQIGILKRLVTIDVGDE---H 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ S + V EGCLSIPD R VKR + +Y D + QII A GLL Sbjct: 68 GLLKMINPEILESSGE-QVGPEGCLSIPDVRGFVKRPEKVKFKYTDVDENEQIIDATGLL 126 Query: 131 ATCLQHELDHLNGILFID 148 A C+ HE+DHLNGILF D Sbjct: 127 AVCICHEIDHLNGILFTD 144 >gi|126449977|ref|YP_001081879.1| polypeptide deformylase [Burkholderia mallei NCTC 10247] gi|251767985|ref|ZP_02269083.2| peptide deformylase [Burkholderia mallei PRL-20] gi|254177135|ref|ZP_04883792.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|126242847|gb|ABO05940.1| peptide deformylase [Burkholderia mallei NCTC 10247] gi|160698176|gb|EDP88146.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|243061150|gb|EES43336.1| peptide deformylase [Burkholderia mallei PRL-20] Length = 179 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 21 YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 78 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + + + Sbjct: 79 -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGESFELDCE 137 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL Sbjct: 138 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 175 >gi|186684172|ref|YP_001867368.1| peptide deformylase [Nostoc punctiforme PCC 73102] gi|186466624|gb|ACC82425.1| peptide deformylase [Nostoc punctiforme PCC 73102] Length = 187 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 92/141 (65%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I K++ ++ ++ ML+ MYS DGIGLAA Q+G+ +L+VIDL+ Sbjct: 24 DRVLRQAAKRISKVDDELRQMVREMLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPENAAN 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP I S D SV +EGCLSIP+ DVKR + + Y D + + + A+ LL Sbjct: 84 PPLVLINPTIKQVSRDISVAEEGCLSIPNVYLDVKRPEVVEIAYKDEYGRPRTLKANDLL 143 Query: 131 ATCLQHELDHLNGILFIDHLS 151 C+QHE+DHLNG++F+D + Sbjct: 144 GRCIQHEMDHLNGVVFVDRVE 164 >gi|52842801|ref|YP_096600.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295432|ref|YP_127847.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens] gi|54298584|ref|YP_124953.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris] gi|148358671|ref|YP_001249878.1| peptide deformylase [Legionella pneumophila str. Corby] gi|296108239|ref|YP_003619940.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|52629912|gb|AAU28653.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752369|emb|CAH13801.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris] gi|53755264|emb|CAH16758.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens] gi|148280444|gb|ABQ54532.1| peptide deformylase [Legionella pneumophila str. Corby] gi|295650141|gb|ADG25988.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|307611474|emb|CBX01145.1| hypothetical protein LPW_28441 [Legionella pneumophila 130b] Length = 170 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD LR++++P+E + + LI++M + MY G+GLAA QIGV RL V Sbjct: 1 MAIRKILYLPDERLRKIAKPVETFDESLQTLINDMFDTMYDARGVGLAAPQIGVSLRLSV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ +K +V +NP+I++ S ++EGCLS+P V R+ +TV+ +D + Sbjct: 61 IDIV--GDKKEQIVIVNPEIVS-SHGEKEFEEGCLSVPGAYDTVVRAEKVTVKALDRFGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +GLLA CLQHE+DH+NG LF+D LS LKR M +K+ K +L+ Sbjct: 118 PFEITGEGLLAECLQHEIDHMNGKLFVDMLSPLKRMMARRKLDKFKRLQ 166 >gi|254424040|ref|ZP_05037758.1| peptide deformylase [Synechococcus sp. PCC 7335] gi|196191529|gb|EDX86493.1| peptide deformylase [Synechococcus sp. PCC 7335] Length = 187 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 65/141 (46%), Positives = 94/141 (66%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ + KI++ + +L+ ML+ MYS DGIGLAA Q+GV +L+VID Sbjct: 24 DRVLRQPAKRVAKIDNALRDLVRKMLQTMYSEDGIGLAAPQVGVNKQLLVIDADPENEAA 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +V +NPKII +SD+ + QEGCLSIP DV R A I V + D N + + + AD LL Sbjct: 84 SALVLVNPKIIRYSDELAAGQEGCLSIPGVYLDVIRPAAIEVSFKDENGRPRKLKADDLL 143 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A +QHE+DHLNG+LF+D + Sbjct: 144 ARVIQHEMDHLNGVLFVDRVE 164 >gi|238028945|ref|YP_002913176.1| polypeptide deformylase [Burkholderia glumae BGR1] gi|237878139|gb|ACR30472.1| Polypeptide deformylase [Burkholderia glumae BGR1] Length = 167 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+ ++ I L+ +M E MY+ GIGLAA Q+ V R++VID + Sbjct: 9 YPDKRLHKVAKPVAVVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDTSED-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ SD +Y+EGCLS+P +V+R + VR +D Q + + Sbjct: 67 -KNELRVFINPEIVWSSDGKQIYEEGCLSVPGVYDEVERPDHVRVRALDVQGQQFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK++ I KM KL Sbjct: 126 GLLAVCVQHEMDHLLGRVFVQYLSPLKQNRIKSKMKKL 163 >gi|53724672|ref|YP_101982.1| peptide deformylase [Burkholderia mallei ATCC 23344] gi|67642453|ref|ZP_00441209.1| peptide deformylase [Burkholderia mallei GB8 horse 4] gi|121600699|ref|YP_994101.1| peptide deformylase [Burkholderia mallei SAVP1] gi|254208639|ref|ZP_04914987.1| polypeptide deformylase [Burkholderia mallei JHU] gi|254360307|ref|ZP_04976577.1| polypeptide deformylase [Burkholderia mallei 2002721280] gi|52428095|gb|AAU48688.1| polypeptide deformylase [Burkholderia mallei ATCC 23344] gi|121229509|gb|ABM52027.1| polypeptide deformylase [Burkholderia mallei SAVP1] gi|147750515|gb|EDK57584.1| polypeptide deformylase [Burkholderia mallei JHU] gi|148029547|gb|EDK87452.1| polypeptide deformylase [Burkholderia mallei 2002721280] gi|238523609|gb|EEP87046.1| peptide deformylase [Burkholderia mallei GB8 horse 4] Length = 167 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + + + Sbjct: 67 -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGESFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL Sbjct: 126 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 163 >gi|189184237|ref|YP_001938022.1| peptide deformylase [Orientia tsutsugamushi str. Ikeda] gi|238692021|sp|B3CTU1|DEF_ORITI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189181008|dbj|BAG40788.1| methionyl-tRNA deformylase [Orientia tsutsugamushi str. Ikeda] Length = 181 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 102/169 (60%), Gaps = 9/169 (5%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 L+ PDPIL++V+ P++ +N I L+D+MLE MY G+GLAA Q+ V R++V+DL Sbjct: 6 LITAPDPILKKVASPVDTVNDSIRQLMDDMLETMYHNHGVGLAAPQVAVSKRIIVLDLSK 65 Query: 66 ---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++ K P+ +NP + S+ + +EGCLS+P +V R I V Y+D Sbjct: 66 VDIKEDNITNSEYKYPLFMVNPIVKAISNQTATAKEGCLSLPKQAIEVSRYHEIQVTYLD 125 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + A+G LA +QHE+DHL+GIL +D+LS LK++ +SK+ Sbjct: 126 YYNKLTTLNAEGWLARAIQHEVDHLDGILLVDYLSNLKKEAALNTLSKI 174 >gi|167561029|ref|ZP_02353945.1| peptide deformylase [Burkholderia oklahomensis EO147] gi|167568291|ref|ZP_02361165.1| peptide deformylase [Burkholderia oklahomensis C6786] Length = 167 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ D VY+EGCLS+P +V+R + VR ++ + I + Sbjct: 67 -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALNEQGESFEIDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL Sbjct: 126 GLLAVCVQHEMDHLMGRVFVQYLSSLKQSRIKTKMKKL 163 >gi|330445859|ref|ZP_08309511.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490050|dbj|GAA04008.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 173 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 74/163 (45%), Positives = 105/163 (64%), Gaps = 5/163 (3%) Query: 10 PDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67 P+P LR + + + ++ I LID+ML+ MY T +GIGLAA Q+G ++VIDL + Sbjct: 10 PNPKLRVQAEEVTDVKAEHIQTLIDDMLQTMYETGNGIGLAAPQVGRKESIIVIDLSEE- 68 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R P VF+NPKI+ ++ V QEGCLS+PDY ADV+R I + +D + + D Sbjct: 69 -RNEPQVFVNPKIVR-GENPVVGQEGCLSVPDYYADVERFEKIELTALDRDGNDIHLERD 126 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 LA LQHE+DHL GILFID+LS LKR M KK+ K +++++ Sbjct: 127 DFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKYLKMQE 169 >gi|325983533|ref|YP_004295935.1| peptide deformylase [Nitrosomonas sp. AL212] gi|325533052|gb|ADZ27773.1| peptide deformylase [Nitrosomonas sp. AL212] Length = 167 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V+ P+ +I I LI++M E MY+ GIGLAA Q+ V R++VID + Sbjct: 9 YPDEKLHTVAAPVSQITDKIRTLINDMAETMYAAPGIGLAATQVDVHERVIVIDTSEA-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R + +V INP+I T S+ S Y+EGCLS+P V+R+ + VR ++ + ++ ADG Sbjct: 67 RNDLLVLINPEI-TASNGISDYEEGCLSVPGIYGKVQRAESVKVRALNAQGESFVLDADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++ SRLK+ K+ K Sbjct: 126 LLAVCIQHEMDHLAGKVFVEYWSRLKQVRTLAKLKK 161 >gi|83589748|ref|YP_429757.1| peptide deformylase [Moorella thermoacetica ATCC 39073] gi|123766806|sp|Q2RK25|DEF_MOOTA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|83572662|gb|ABC19214.1| peptide deformylase [Moorella thermoacetica ATCC 39073] Length = 155 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 66/147 (44%), Positives = 97/147 (65%), Gaps = 6/147 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ DP+LR S+P+ KI S++ L+DN+ + MY G+GLAA QIGVL R++V+D+ + Sbjct: 6 ILTLGDPLLREKSQPVRKITSNVWKLLDNLADTMYDAPGVGLAAPQIGVLKRVIVVDVGE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 INP++I S + V EGCLSIP + +V R+A +TVR +D + + + I Sbjct: 66 GLTE-----LINPEVIAASGE-EVGAEGCLSIPGAQGEVPRAAVVTVRGLDRHGRVREIR 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+GL A LQHE+DHL+GILFID + R Sbjct: 120 AEGLYARALQHEIDHLDGILFIDKVVR 146 >gi|229514651|ref|ZP_04404112.1| peptide deformylase [Vibrio cholerae TMA 21] gi|229348631|gb|EEO13589.1| peptide deformylase [Vibrio cholerae TMA 21] Length = 168 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP LR S+ + + S + LID++L+ +Y+TD GIGLAA Q+G +VVIDL Sbjct: 6 ILTAPDPRLRLQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D+ R P+V INPK+++ S+ + QEGCLS+PDY ADV+R + V +D + I Sbjct: 65 DN--RDQPLVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLCI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|161526293|ref|YP_001581305.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|160343722|gb|ABX16808.1| peptide deformylase [Burkholderia multivorans ATCC 17616] Length = 181 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 23 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 80 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+II SD VY+EGCLS+P +V+R + VR ++ + + + Sbjct: 81 -KNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGETFELDCE 139 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 140 GLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKL 177 >gi|126441948|ref|YP_001057204.1| polypeptide deformylase [Burkholderia pseudomallei 668] gi|126453149|ref|YP_001064443.1| polypeptide deformylase [Burkholderia pseudomallei 1106a] gi|217424946|ref|ZP_03456442.1| peptide deformylase [Burkholderia pseudomallei 576] gi|226194603|ref|ZP_03790198.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] gi|237810338|ref|YP_002894789.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|242315752|ref|ZP_04814768.1| peptide deformylase [Burkholderia pseudomallei 1106b] gi|254182253|ref|ZP_04888850.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|254197101|ref|ZP_04903524.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|126221441|gb|ABN84947.1| peptide deformylase [Burkholderia pseudomallei 668] gi|126226791|gb|ABN90331.1| peptide deformylase [Burkholderia pseudomallei 1106a] gi|169653843|gb|EDS86536.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|184212791|gb|EDU09834.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|217391966|gb|EEC31992.1| peptide deformylase [Burkholderia pseudomallei 576] gi|225933304|gb|EEH29296.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] gi|237506162|gb|ACQ98480.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|242138991|gb|EES25393.1| peptide deformylase [Burkholderia pseudomallei 1106b] Length = 179 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 21 YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 78 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + + + Sbjct: 79 -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFELDCE 137 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL Sbjct: 138 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 175 >gi|221201858|ref|ZP_03574895.1| peptide deformylase [Burkholderia multivorans CGD2M] gi|221207636|ref|ZP_03580644.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221214668|ref|ZP_03587638.1| peptide deformylase [Burkholderia multivorans CGD1] gi|221165558|gb|EED98034.1| peptide deformylase [Burkholderia multivorans CGD1] gi|221172482|gb|EEE04921.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221178278|gb|EEE10688.1| peptide deformylase [Burkholderia multivorans CGD2M] Length = 181 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 23 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 80 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+II SD VY+EGCLS+P +V+R + VR ++ + + + Sbjct: 81 -KNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGETFELDCE 139 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 140 GLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKL 177 >gi|167623826|ref|YP_001674120.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] gi|167353848|gb|ABZ76461.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] Length = 163 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R + P+ I S + ID+++E MY TD GIGLAA Q+G L+ ++VIDL Sbjct: 6 ILTIPDERLKRKAVPVTDIES-VQGFIDDLIETMYDTDDGIGLAATQVGSLHAILVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R PMV INP+ + ++ +EGCLSIP YRA V R + V +D + + I Sbjct: 65 DE--RDQPMVLINPEFLESRGEYQ-GEEGCLSIPGYRAKVNRHQGVKVTALDRHGKAFEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D LA LQHE+DHLNG++F DHLS LK+ + KK+ K Sbjct: 122 DTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKK 161 >gi|303233917|ref|ZP_07320566.1| peptide deformylase [Finegoldia magna BVS033A4] gi|302494842|gb|EFL54599.1| peptide deformylase [Finegoldia magna BVS033A4] Length = 162 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 66/150 (44%), Positives = 91/150 (60%), Gaps = 3/150 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR+ SR +EKI++ I + ++M E MY GIGLA VQ+G+L R+VVID+QD + Sbjct: 11 DPILRKKSREVEKIDNRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK- 69 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 MV INPKII S+D + EGCLS+P V+R + V Y D N Q + Sbjct: 70 --MVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGNTQRVTGTDYK 127 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A C HELDHL+G+L+ D + L + + + Sbjct: 128 AHCFCHELDHLDGVLYTDKVLNLSEEEVER 157 >gi|296161362|ref|ZP_06844169.1| peptide deformylase [Burkholderia sp. Ch1-1] gi|295888348|gb|EFG68159.1| peptide deformylase [Burkholderia sp. Ch1-1] Length = 167 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 103/162 (63%), Gaps = 2/162 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PD L ++++P+E +N I L+ +M E MY+ G+GLAA Q+ V R++VID+ D Sbjct: 6 IINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIVIDVSD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + + Sbjct: 66 D--HNELLAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFEMD 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 124 CEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLAH 165 >gi|167585076|ref|ZP_02377464.1| peptide deformylase [Burkholderia ubonensis Bu] Length = 167 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/157 (41%), Positives = 101/157 (64%), Gaps = 2/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDISED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + FINP+++ SD VY+EGCLS+P +V+R + VR +D + + +G Sbjct: 67 KSELRAFINPELVWSSDAKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGETFELDCEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 127 LLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKSKMKKL 163 >gi|189348993|ref|YP_001944621.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616] gi|189333015|dbj|BAG42085.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616] Length = 167 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+II SD VY+EGCLS+P +V+R + VR ++ + + + Sbjct: 67 -KNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGETFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 126 GLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKL 163 >gi|91781430|ref|YP_556636.1| peptide deformylase [Burkholderia xenovorans LB400] gi|91685384|gb|ABE28584.1| peptide deformylase [Burkholderia xenovorans LB400] Length = 167 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 103/162 (63%), Gaps = 2/162 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PD L ++++P+E +N I L+ +M E MY+ G+GLAA Q+ V R++VID+ D Sbjct: 6 IINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIVIDVSD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + + Sbjct: 66 D--HNELLTFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFEMD 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 124 CEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLAH 165 >gi|325534093|pdb|3QU1|A Chain A, Peptide Deformylase From Vibrio Cholerae gi|325534094|pdb|3QU1|B Chain B, Peptide Deformylase From Vibrio Cholerae Length = 171 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP LR S+ + + S + LID++L+ +Y+TD GIGLAA Q+G +VVIDL Sbjct: 9 ILTAPDPRLRVQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 67 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D+ R P+V INPK+++ S+ + QEGCLS+PDY ADV+R + V +D + I Sbjct: 68 DN--RDQPLVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRI 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 125 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 169 >gi|163859048|ref|YP_001633346.1| peptide deformylase [Bordetella petrii DSM 12804] gi|163262776|emb|CAP45079.1| polypeptide deformylase [Bordetella petrii] Length = 170 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L + ++P+ ++ I L+ +M + MY G+GLAA Q+ V R+VVID+ + + Sbjct: 9 YPDPRLHKKAKPVAVVDDRIRKLVRDMADTMYDAPGVGLAATQVDVHERVVVIDVSEEGN 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V INP+I SD+ Y+EGCLS+P +V+R+A I R +D + A+G Sbjct: 69 ELR--VLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRYRALDADGNPYEAEAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL+G +F+++LS LK++ I K+ K Sbjct: 127 LLAVCVQHELDHLDGKVFVEYLSSLKQNRIKTKLKK 162 >gi|53717762|ref|YP_106748.1| peptide deformylase [Burkholderia pseudomallei K96243] gi|162210090|ref|YP_331761.2| peptide deformylase [Burkholderia pseudomallei 1710b] gi|167717517|ref|ZP_02400753.1| polypeptide deformylase [Burkholderia pseudomallei DM98] gi|167736559|ref|ZP_02409333.1| polypeptide deformylase [Burkholderia pseudomallei 14] gi|167813633|ref|ZP_02445313.1| polypeptide deformylase [Burkholderia pseudomallei 91] gi|167822177|ref|ZP_02453648.1| polypeptide deformylase [Burkholderia pseudomallei 9] gi|167843768|ref|ZP_02469276.1| polypeptide deformylase [Burkholderia pseudomallei B7210] gi|167892270|ref|ZP_02479672.1| polypeptide deformylase [Burkholderia pseudomallei 7894] gi|167900763|ref|ZP_02487968.1| polypeptide deformylase [Burkholderia pseudomallei NCTC 13177] gi|167908987|ref|ZP_02496078.1| polypeptide deformylase [Burkholderia pseudomallei 112] gi|167917029|ref|ZP_02504120.1| polypeptide deformylase [Burkholderia pseudomallei BCC215] gi|254188218|ref|ZP_04894730.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|254258214|ref|ZP_04949268.1| peptide deformylase [Burkholderia pseudomallei 1710a] gi|52208176|emb|CAH34107.1| peptide deformylase [Burkholderia pseudomallei K96243] gi|157935898|gb|EDO91568.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|254216903|gb|EET06287.1| peptide deformylase [Burkholderia pseudomallei 1710a] Length = 167 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + + + Sbjct: 67 -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL Sbjct: 126 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 163 >gi|153802627|ref|ZP_01957213.1| polypeptide deformylase [Vibrio cholerae MZO-3] gi|124121843|gb|EAY40586.1| polypeptide deformylase [Vibrio cholerae MZO-3] Length = 168 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP LR S+ + + S + LID++L+ +Y+TD GIGLAA Q+G +VVIDL Sbjct: 6 ILTAPDPRLRLQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D+ R P+V INPK+++ S+ + QEGCLS+PDY ADV+R + V +D + I Sbjct: 65 DN--RDQPLVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|254295706|ref|ZP_04963163.1| polypeptide deformylase [Burkholderia pseudomallei 406e] gi|157805961|gb|EDO83131.1| polypeptide deformylase [Burkholderia pseudomallei 406e] Length = 165 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 7 YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 64 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + + + Sbjct: 65 -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFELDCE 123 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL Sbjct: 124 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 161 >gi|15600920|ref|NP_232550.1| peptide deformylase [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587986|ref|ZP_01677739.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121729670|ref|ZP_01682131.1| polypeptide deformylase [Vibrio cholerae V52] gi|147672038|ref|YP_001215964.1| peptide deformylase [Vibrio cholerae O395] gi|153819711|ref|ZP_01972378.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|153822662|ref|ZP_01975329.1| polypeptide deformylase [Vibrio cholerae B33] gi|153825061|ref|ZP_01977728.1| peptide deformylase [Vibrio cholerae MZO-2] gi|153830707|ref|ZP_01983374.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|227811776|ref|YP_002811786.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|229506685|ref|ZP_04396194.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229510520|ref|ZP_04400000.1| peptide deformylase [Vibrio cholerae B33] gi|229517348|ref|ZP_04406793.1| peptide deformylase [Vibrio cholerae RC9] gi|229527868|ref|ZP_04417259.1| peptide deformylase [Vibrio cholerae 12129(1)] gi|229605159|ref|YP_002875863.1| peptide deformylase [Vibrio cholerae MJ-1236] gi|254850416|ref|ZP_05239766.1| peptide deformylase 2 [Vibrio cholerae MO10] gi|297579720|ref|ZP_06941647.1| polypeptide deformylase [Vibrio cholerae RC385] gi|298500007|ref|ZP_07009813.1| peptide deformylase [Vibrio cholerae MAK 757] gi|23396575|sp|Q9KN16|DEF2_VIBCH RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|9657539|gb|AAF96063.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547784|gb|EAX57873.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121628568|gb|EAX61048.1| polypeptide deformylase [Vibrio cholerae V52] gi|126509754|gb|EAZ72348.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|126519819|gb|EAZ77042.1| polypeptide deformylase [Vibrio cholerae B33] gi|146314421|gb|ABQ18961.1| polypeptide deformylase [Vibrio cholerae O395] gi|148873804|gb|EDL71939.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|149741386|gb|EDM55420.1| peptide deformylase [Vibrio cholerae MZO-2] gi|227010918|gb|ACP07129.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|227014777|gb|ACP10986.1| polypeptide deformylase [Vibrio cholerae O395] gi|229334230|gb|EEN99715.1| peptide deformylase [Vibrio cholerae 12129(1)] gi|229345384|gb|EEO10357.1| peptide deformylase [Vibrio cholerae RC9] gi|229352965|gb|EEO17905.1| peptide deformylase [Vibrio cholerae B33] gi|229357036|gb|EEO21954.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229371645|gb|ACQ62067.1| peptide deformylase [Vibrio cholerae MJ-1236] gi|254846121|gb|EET24535.1| peptide deformylase 2 [Vibrio cholerae MO10] gi|297535366|gb|EFH74200.1| polypeptide deformylase [Vibrio cholerae RC385] gi|297541988|gb|EFH78039.1| peptide deformylase [Vibrio cholerae MAK 757] Length = 168 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP LR S+ + + S + LID++L+ +Y+TD GIGLAA Q+G +VVIDL Sbjct: 6 ILTAPDPRLRVQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D+ R P+V INPK+++ S+ + QEGCLS+PDY ADV+R + V +D + I Sbjct: 65 DN--RDQPLVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|312797602|ref|YP_004030524.1| peptide deformylase [Burkholderia rhizoxinica HKI 454] gi|312169377|emb|CBW76380.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI 454] Length = 169 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 66/161 (40%), Positives = 103/161 (63%), Gaps = 2/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+E+++ I L+ +M E MY+ G+GLAA Q+ V R+VVID+ D Sbjct: 11 YPDKRLHKVAKPVERVDERIRKLVADMAETMYAASGVGLAATQVDVHERVVVIDVSDT-- 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ SD+ + +EGCLS+P V+R+ + VR ++ N + + +G Sbjct: 69 RDALRVFINPEIVWSSDERDINEEGCLSVPRICDSVERAERVRVRALNENGESFELECEG 128 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHL G +F+++LS LK+ I M K + R Sbjct: 129 LLAICIQHEMDHLLGKVFVEYLSPLKQMRIKTTMKKFERAR 169 >gi|134297376|ref|YP_001121111.1| peptide deformylase [Burkholderia vietnamiensis G4] gi|134140533|gb|ABO56276.1| peptide deformylase [Burkholderia vietnamiensis G4] Length = 167 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+I+ SD VY+EGCLS+P +V+R + VR ++ + + + Sbjct: 67 -KNELRAFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNERGEPFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163 >gi|170734476|ref|YP_001766423.1| peptide deformylase [Burkholderia cenocepacia MC0-3] gi|254246863|ref|ZP_04940184.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184] gi|124871639|gb|EAY63355.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184] gi|169817718|gb|ACA92301.1| peptide deformylase [Burkholderia cenocepacia MC0-3] Length = 167 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 103/158 (65%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+I+ SD +Y+EGCLS+P +V+R + VR ++ + + + Sbjct: 67 -KNELRAFINPEIVWSSDAKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163 >gi|307822764|ref|ZP_07652995.1| peptide deformylase [Methylobacter tundripaludum SV96] gi|307736368|gb|EFO07214.1| peptide deformylase [Methylobacter tundripaludum SV96] Length = 168 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 100/157 (63%), Gaps = 3/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR+ + ++ ++ I L+D+MLE MY + G+GLAA Q+ V R+VVID+ + Sbjct: 9 FPDERLRKKAAIVKTVDDKIKKLVDDMLETMYESHGVGLAATQVNVHQRVVVIDVSEE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P+ INP+II D +EGCLS+P + V+R+ I V+ +D + + A Sbjct: 67 KDAPLCLINPEIIE-KDGVKESEEGCLSVPGFFEKVERAEHIIVKALDREGEPFELSARD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA C+QHELDHL+G LF+D++S LKR I KK+ K+ Sbjct: 126 LLAVCVQHELDHLDGKLFVDYISPLKRQRIKKKLEKI 162 >gi|300692919|ref|YP_003753914.1| peptide deformylase [Ralstonia solanacearum PSI07] gi|299079979|emb|CBJ52656.1| peptide deformylase [Ralstonia solanacearum PSI07] Length = 169 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 100/156 (64%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +V++P+ +++ I L+ +M E MY GIGLAA Q+ V R++ ID+ + Sbjct: 9 YPDPRLHKVAKPVAEVDGRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + + ADG Sbjct: 67 RDELRVFINPEILWASKERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGETFELEADG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LK++ I K+ K Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 162 >gi|298370618|ref|ZP_06981933.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314] gi|298281228|gb|EFI22718.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314] Length = 167 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V++ + K++ I L+ +M E MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 YPDERLHTVAKSVGKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVVMDLTED-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R P VFINP +I D + Y+EGCLS+P V R+ + V ++ + + ADG Sbjct: 67 RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHELDHL GI+F++ LS+LK+ I K+ K Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 161 >gi|261344111|ref|ZP_05971755.1| peptide deformylase [Providencia rustigianii DSM 4541] gi|282567702|gb|EFB73237.1| peptide deformylase [Providencia rustigianii DSM 4541] Length = 168 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/158 (46%), Positives = 100/158 (63%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + ++ PD LR P+ + + LID+++E MYSTD GIGLAA QI ++ Sbjct: 1 MAVREIIEIPDERLRIKCAPVTDFAA-VQTLIDDLIETMYSTDTGIGLAAPQIAETKAIM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + R PMVFINP+II S+ + YQEGCLS+PD ADV R + V+ D + Sbjct: 60 VIDISEE--RNQPMVFINPEIIE-SEGETSYQEGCLSVPDVYADVPRFQRVKVKAFDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 I+ +D LA +QHE+DHLNG +FIDHLS LKR+M Sbjct: 117 NEFIVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154 >gi|212709522|ref|ZP_03317650.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM 30120] gi|212687860|gb|EEB47388.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM 30120] Length = 168 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 100/158 (63%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + ++ PD LR P+ + + L+D+++E MYSTD GIGLAA QI ++ Sbjct: 1 MAVREIIEIPDERLRIQCSPVTDFAA-VQTLVDDLIETMYSTDNGIGLAATQIAETKAIM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + R PMVFINP+II S+ + YQEGCLS+PD ADV R + V+ D + Sbjct: 60 VIDISEE--RNEPMVFINPEIIE-SEGETSYQEGCLSVPDVYADVPRFLRVKVKAFDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 ++ +D LA +QHE+DHLNG +FIDHLS LKR+M Sbjct: 117 NEFVVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154 >gi|302380585|ref|ZP_07269050.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3] gi|302311528|gb|EFK93544.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3] Length = 162 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 3/150 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR+ SR +EKI+ I + ++M E MY GIGLA VQ+G+L R+VVID+QD + Sbjct: 11 DPILRKKSREVEKIDDRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK- 69 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 MV INPKII S+D + EGCLS+P V+R + V Y D N Q + Sbjct: 70 --MVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGNTQRVTGTDYK 127 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A C HELDHL+G+L+ D + L + + + Sbjct: 128 AHCFCHELDHLDGVLYTDKVLNLSEEEVER 157 >gi|307728142|ref|YP_003905366.1| peptide deformylase [Burkholderia sp. CCGE1003] gi|307582677|gb|ADN56075.1| peptide deformylase [Burkholderia sp. CCGE1003] Length = 167 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++VID+ D AH Sbjct: 9 YPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSD-AH 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + + FINP+I+ S++ + +EGCLS+P +V+R+ + VR ++ + + +G Sbjct: 68 DQ-LLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFEMDCEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 127 LLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLAH 165 >gi|169824358|ref|YP_001691969.1| polypeptide deformylase [Finegoldia magna ATCC 29328] gi|238687734|sp|B0S139|DEF_FINM2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167831163|dbj|BAG08079.1| polypeptide deformylase [Finegoldia magna ATCC 29328] Length = 162 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/150 (43%), Positives = 91/150 (60%), Gaps = 3/150 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR+ SR +EKI+ I ++++M E MY GIGLA VQ+G+L R+VVID+QD + Sbjct: 11 DPILRKKSREVEKIDDRIKQIVEDMFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK- 69 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 MV INPKII S++ + EGCLS+P V+R + V Y D N Q + Sbjct: 70 --MVLINPKIIEKSEEKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGNTQRVMGTDYK 127 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A C HELDHL+G+L+ D + L + + + Sbjct: 128 AHCFCHELDHLDGVLYTDKVLNLSEEEVER 157 >gi|94971313|ref|YP_593361.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] gi|94553363|gb|ABF43287.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] Length = 170 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 1/163 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V DP+L R + + + + + L+++M E MY G+GLAA QIG+ R+ V+D+ Sbjct: 4 PIVKLGDPVLERPAAAVTEFDDGLKKLVEDMFESMYDAHGVGLAAPQIGIGKRIAVVDVT 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +V INP+II +D QEGCLSIPD+R V R+ +TV+ D + Sbjct: 64 FKEDPNAKLVLINPEII-LTDGRQTSQEGCLSIPDFREKVTRARRVTVKAQDLTGKWFEH 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + LLA HE DHLNG L+I H+S LKRD+I +K+ KL++ Sbjct: 123 TGEDLLARAFLHETDHLNGKLYISHVSALKRDLIKRKVKKLIK 165 >gi|94676503|ref|YP_588858.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123384127|sp|Q1LT56|DEF_BAUCH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|94219653|gb|ABF13812.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 167 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 66/163 (40%), Positives = 107/163 (65%), Gaps = 3/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PD LR++S+P+ KIN+ I ++ +M + MY +GIGLAA Q+ + ++VID+ Sbjct: 5 PILYYPDHRLRQISKPVNKINNSIYRIVYDMFDTMYHKNGIGLAAPQVNINLNIIVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ ++ +V INP+++ S + ++ EGCLSIP+ V R+ I VR +D N + Sbjct: 65 ENKEQR--LVLINPELLAKSGETGIH-EGCLSIPEQHGFVPRAKNIKVRALDLNGNSFNL 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + L A C+QHE+DHL G LFID+LS LKR + KKM +L++ Sbjct: 122 ETNDLQAICIQHEMDHLVGKLFIDYLSPLKRQRLLKKMKQLIR 164 >gi|300705526|ref|YP_003747129.1| peptide deformylase [Ralstonia solanacearum CFBP2957] gi|299073190|emb|CBJ44548.1| peptide deformylase [Ralstonia solanacearum CFBP2957] Length = 169 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +V++P+ ++ I L+ +M E MY G+GLAA QI V R++ ID+ + Sbjct: 9 YPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGVGLAATQIDVHERVITIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + + ADG Sbjct: 67 RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELEADG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LK++ I K+ K Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 162 >gi|241664932|ref|YP_002983292.1| peptide deformylase [Ralstonia pickettii 12D] gi|309780262|ref|ZP_07675013.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] gi|240866959|gb|ACS64620.1| peptide deformylase [Ralstonia pickettii 12D] gi|308920965|gb|EFP66611.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] Length = 171 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +V++P+ ++ I L+ +M E MY G+GLAA Q+ V R++ ID+ + Sbjct: 9 YPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVITIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ SD+ V+ EGCLS+PD V R A + VR ++ + + AD Sbjct: 67 RDELRVFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGETFELEADD 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LK+ I K+ K Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKK 162 >gi|238926274|ref|ZP_04658034.1| peptide deformylase [Selenomonas flueggei ATCC 43531] gi|238885954|gb|EEQ49592.1| peptide deformylase [Selenomonas flueggei ATCC 43531] Length = 160 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/146 (43%), Positives = 93/146 (63%), Gaps = 4/146 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+L++ + PIE++ L+D+M E MY+ DG+GLAA Q+G R+VVID+QD Sbjct: 15 DPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVVIDVQDE---H 71 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP +IT + EGCLS+P DV+R+ +TV Y D ++ + + A+GLL Sbjct: 72 GLLELVNP-VITMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSRRRTLTAEGLL 130 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRD 156 A C+QHE DHL G LFID RL+++ Sbjct: 131 ARCIQHECDHLEGRLFIDIAVRLRKE 156 >gi|157363555|ref|YP_001470322.1| peptide deformylase [Thermotoga lettingae TMO] gi|167012066|sp|A8F524|DEF_THELT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157314159|gb|ABV33258.1| peptide deformylase [Thermotoga lettingae TMO] Length = 171 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/168 (42%), Positives = 110/168 (65%), Gaps = 9/168 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MVKK + + DP+LR+ S+ +E+++ ++LI ++ E MY+TDGIGLAA QIGV R+ V Sbjct: 1 MVKK-IRLLGDPVLRKKSKNVERVDETTISLIKDLFETMYATDGIGLAAPQIGVSLRIFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VFINP+II S++ + +EGCLS+P+ DV+RS +TVRYM+ + + Sbjct: 60 MD------DGKPRVFINPEIIYKSEEKEIAEEGCLSVPEVFEDVERSKEVTVRYMNEHGE 113 Query: 121 H-QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + D A +QHE DHL G+LFID + +R I KK+ ++V+ Sbjct: 114 EVEESFVD-YSARVVQHEYDHLQGVLFIDLIPSSRRFAIRKKLIEIVR 160 >gi|322384330|ref|ZP_08058028.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150832|gb|EFX44269.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 160 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 4/156 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V+ PDP+LR ++P+ K NS + L+D+M + MY +G+GLAA Q+G+L R +V+D+ D Sbjct: 6 IVMDPDPVLREKAKPVTKFNSSLHKLLDDMADTMYENEGVGLAAPQVGILKRAIVMDVGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +NP+I+ S + + EGCLSIPD + DV+R +TV+ D N I+ Sbjct: 66 E---HGLIELVNPEIVATSGE-QIGPEGCLSIPDLQGDVRRPMNVTVKGQDRNGNEVIVE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 LLA C+ HE+DHLNGILF D +L R+ + + Sbjct: 122 GTELLARCIMHEVDHLNGILFTDLALKLYRNELEEN 157 >gi|170694015|ref|ZP_02885171.1| peptide deformylase [Burkholderia graminis C4D1M] gi|170141087|gb|EDT09259.1| peptide deformylase [Burkholderia graminis C4D1M] Length = 167 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++VID+ D AH Sbjct: 9 YPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSD-AH 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + + FINP+I+ S++ + +EGCLS+P +V+R+ + VR ++ + + +G Sbjct: 68 DQ-LLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFEMDCEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 127 LLAVCIQHEMDHLMGHVFVEYLSPLKQTRIKSKMKKLAH 165 >gi|319945035|ref|ZP_08019297.1| peptide deformylase [Lautropia mirabilis ATCC 51599] gi|319741605|gb|EFV94030.1| peptide deformylase [Lautropia mirabilis ATCC 51599] Length = 170 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 98/161 (60%), Gaps = 2/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L V+ + ++ I L+ +M E MY+ GIGLAA Q+ V R+VVID+ + Sbjct: 9 YPDARLHTVAERVPVVDDRIRKLVADMAETMYAAPGIGLAATQVNVHERVVVIDITET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 VFINP+I SD Y+EGCLSIP V+R +TV + + + + ADG Sbjct: 67 HDQLQVFINPEITWSSDTLQSYEEGCLSIPGIYDKVERPDAVTVTALGLDGKPFTLEADG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LLA C+QHE+DHLNG LF HLSRLK++ I +K+ K+ + R Sbjct: 127 LLAVCIQHEIDHLNGKLFTQHLSRLKQNRIRQKVLKMERER 167 >gi|107024058|ref|YP_622385.1| peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116691145|ref|YP_836768.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|206558867|ref|YP_002229627.1| peptide deformylase [Burkholderia cenocepacia J2315] gi|105894247|gb|ABF77412.1| peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116649234|gb|ABK09875.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|198034904|emb|CAR50776.1| peptide deformylase [Burkholderia cenocepacia J2315] Length = 167 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 102/158 (64%), Gaps = 4/158 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + FINP+I+ SD Y+EGCLS+P +V+R + VR ++ + + + Sbjct: 67 -KNELRAFINPEIVWSSDAKQTYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163 >gi|88811384|ref|ZP_01126639.1| polypeptide deformylase [Nitrococcus mobilis Nb-231] gi|88791273|gb|EAR22385.1| polypeptide deformylase [Nitrococcus mobilis Nb-231] Length = 177 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 59/143 (41%), Positives = 95/143 (66%), Gaps = 3/143 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP LR ++P+EK+ ++ L+D++ E MY GIGLAA Q+ + +R++V+D+ + Sbjct: 9 YPDPQLRIRAQPVEKVTDEVRRLVDDLFETMYDAPGIGLAATQVNIHWRVLVVDITEA-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P+ FINP+I+ + + QEGCLS+P Y V+R+ ++ V D + + + DG Sbjct: 67 KNEPLAFINPQILERKGEEEM-QEGCLSVPGYFDTVRRAEWVKVHAQDRSGEPFELETDG 125 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA C+QHE+DHL G LF+D+LS Sbjct: 126 LLAVCIQHEIDHLEGKLFVDYLS 148 >gi|158337779|ref|YP_001518955.1| peptide deformylase [Acaryochloris marina MBIC11017] gi|158308020|gb|ABW29637.1| peptide deformylase [Acaryochloris marina MBIC11017] Length = 189 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 3/157 (1%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ + K++ +I L ML+ MYS DGIGLAA Q+ V +L+V+D Sbjct: 24 DRVLRQSAKRVSKVDDEIRELARQMLQTMYSADGIGLAAPQVAVGKQLIVVDTDPEEPAN 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ +NPKI SDD ++ QEGCLSIP DV+R A I V Y D + Q+I A LL Sbjct: 84 QPIILLNPKIRRHSDDLALGQEGCLSIPGVYLDVRRPAQIEVAYKDEQGRPQVIVATDLL 143 Query: 131 ATCLQHELDHLNGILFIDHLSR---LKRDMITKKMSK 164 A +QHE+DHL G++F+D + L +++ + SK Sbjct: 144 ARVIQHEMDHLTGVMFVDRVENSLLLNQELTKQGFSK 180 >gi|40063276|gb|AAR38094.1| polypeptide deformylase [uncultured marine bacterium 578] Length = 165 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/143 (44%), Positives = 94/143 (65%), Gaps = 3/143 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR +++P+ +NSDI + +M E MY GIGLAA Q+ R++VID+ + + Sbjct: 8 YPDKRLRTIAKPVVSVNSDIKKQVKDMFETMYDAPGIGLAATQVNFHQRIIVIDISEDCN 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P INP+II S + ++EGCLS+PDY +VKR+ I V ++ + I A+ Sbjct: 68 Q--PFCLINPEIIEKSGEIE-WEEGCLSVPDYYENVKRANKIKVCALNEHGNTFDIEANE 124 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 +LA C+QHE+DHLNGILF+DHLS Sbjct: 125 MLAICIQHEMDHLNGILFVDHLS 147 >gi|229526222|ref|ZP_04415626.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] gi|254286639|ref|ZP_04961594.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|150423223|gb|EDN15169.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|229336380|gb|EEO01398.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] Length = 168 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/165 (44%), Positives = 107/165 (64%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP LR S+ + + S + LID++L+ +Y+TD GIGLAA Q+G +VVIDL Sbjct: 6 ILTAPDPRLRVQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D+ R P+V INPK+++ ++ + QEGCLS+PDY ADV+R + V +D + I Sbjct: 65 DN--RDQPLVLINPKVVS-GNNKEMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|187922316|ref|YP_001893958.1| peptide deformylase [Burkholderia phytofirmans PsJN] gi|187713510|gb|ACD14734.1| peptide deformylase [Burkholderia phytofirmans PsJN] Length = 167 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L ++++P+E +N I L+ +M E MY+ G+GLAA Q+ V R++ ID+ D Sbjct: 9 YPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVITIDVSDD-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + + +G Sbjct: 67 HNELLAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFEMDCEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 127 LLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLAH 165 >gi|329913547|ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] gi|327545311|gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] Length = 177 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +++RP+ + + L+ +M E MY G+GLA+ Q+ V +L+++D+ D+ Sbjct: 9 YPDPRLHKIARPVTVFDDRLKQLVADMAETMYDAPGVGLASSQVDVHEQLIIVDISDN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + V INP+I S + +Y EGCLS+P V+R A I VR +D + + ADG Sbjct: 67 QSELRVLINPEITWASTEMQLYDEGCLSVPGVYDGVERHARIKVRALDVDGKEFDTTADG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LKR+ I KM K Sbjct: 127 LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLK 162 >gi|120599034|ref|YP_963608.1| peptide deformylase [Shewanella sp. W3-18-1] gi|146292895|ref|YP_001183319.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|120559127|gb|ABM25054.1| peptide deformylase [Shewanella sp. W3-18-1] gi|145564585|gb|ABP75520.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|319426575|gb|ADV54649.1| peptide deformylase [Shewanella putrefaciens 200] Length = 163 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 102/160 (63%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R ++P++ I + + ID+++E MY TD GIGLAA Q+G ++VIDL Sbjct: 6 ILTIPDERLKRKAQPVKDIEA-VQGFIDDLIETMYHTDDGIGLAATQVGSTDAIIVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R P+V INP+I+ S +F V +EGCLSIP YRA V R + V +D + I Sbjct: 65 DG--RDQPLVLINPEIVEKSGEF-VGEEGCLSIPGYRAKVSRFEKVKVTALDRTGKAIEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 122 ETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRK 161 >gi|27367269|ref|NP_762796.1| peptide deformylase [Vibrio vulnificus CMCP6] gi|320159078|ref|YP_004191456.1| peptide deformylase [Vibrio vulnificus MO6-24/O] gi|31076649|sp|Q8D5P5|DEF2_VIBVU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|27358838|gb|AAO07786.1| peptide deformylase [Vibrio vulnificus CMCP6] gi|319934390|gb|ADV89253.1| peptide deformylase [Vibrio vulnificus MO6-24/O] Length = 168 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/165 (43%), Positives = 107/165 (64%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP LR S+ + + + + LID++LE +Y TD G+GLAA Q+G +VVIDL Sbjct: 6 ILTAPDPRLRVQSKEVTDVAA-VQTLIDDLLETLYETDNGVGLAAPQVGREEAIVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ R P+V +NPK+++ S+ + QEGCLS+PDY ADV+R + V +D + + I Sbjct: 65 EN--RDEPLVLVNPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDRDGKPLRI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K +LR Sbjct: 122 ETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166 >gi|83748633|ref|ZP_00945651.1| Peptide deformylase [Ralstonia solanacearum UW551] gi|83724677|gb|EAP71837.1| Peptide deformylase [Ralstonia solanacearum UW551] Length = 169 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ ID+ + Sbjct: 9 YPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + + ADG Sbjct: 67 RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELDADG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LK++ I K+ K Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 162 >gi|224419234|ref|ZP_03657240.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|253826952|ref|ZP_04869837.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|313142736|ref|ZP_07804929.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|253510358|gb|EES89017.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|313131767|gb|EFR49384.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] Length = 168 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---D 62 ++ +P+PILR++S+PIE N + L+D+M EVM +G+G++A+Q+ R ++I D Sbjct: 4 VITYPNPILRQISQPIEVFNESLHELLDSMYEVMLQKNGVGISAIQVAKPIRALLICLPD 63 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + + H+++ + INP+I+ D ++ EGCLS+P++ +VKR++ + V Y D + Sbjct: 64 EEGNQHKEDLLEIINPQILE-KDGEIIFNEGCLSVPEFYEEVKRASSLKVAYQDRYGNPK 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A LA LQHE+DHLNGILFID LS LKR K++ + Sbjct: 123 EMEAKDYLAVALQHEIDHLNGILFIDKLSILKRKKFEKELKQ 164 >gi|304437066|ref|ZP_07397029.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370017|gb|EFM23679.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 160 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 63/145 (43%), Positives = 92/145 (63%), Gaps = 4/145 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+L++ + PIE++ L+D+M E MY+ DG+GLAA Q+G R+VVID+QD Sbjct: 15 DPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVVIDVQDE---H 71 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP +IT + EGCLS+P DV+R+ +TV Y D ++ + + A+GLL Sbjct: 72 GLLELVNP-VITMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSRRRTLTAEGLL 130 Query: 131 ATCLQHELDHLNGILFIDHLSRLKR 155 A C+QHE DHL G LFID RL++ Sbjct: 131 ARCIQHECDHLEGRLFIDIAVRLRK 155 >gi|306440704|pdb|3OCA|A Chain A, Crystal Structure Of Peptide Deformylase From Ehrlichia Chaffeensis gi|306440705|pdb|3OCA|B Chain B, Crystal Structure Of Peptide Deformylase From Ehrlichia Chaffeensis Length = 209 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 17/176 (9%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---- 61 +V PD L S +EK++ I L+D+M E M++ G+GLAAVQ+GV R++V+ Sbjct: 27 IVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPE 86 Query: 62 DLQDHAHRKN-------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 + +D +N P INPKI+ S + +EGCLS+P Y + R Sbjct: 87 EFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQ 146 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I V+Y+D N II A G LA CLQHE+DHLNG +F+ +LS+ KRD +K+ K Sbjct: 147 RIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKK 202 >gi|261856667|ref|YP_003263950.1| peptide deformylase [Halothiobacillus neapolitanus c2] gi|261837136|gb|ACX96903.1| peptide deformylase [Halothiobacillus neapolitanus c2] Length = 171 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 69/165 (41%), Positives = 99/165 (60%), Gaps = 1/165 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +++FPD LRRV+ +++ ++ + L + MLE MY G+GLAA QI V R+ V D + Sbjct: 6 VLLFPDERLRRVAAEVKQFDARVQRLSEQMLETMYDARGVGLAATQIDVHERMFVADCAE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+VFINP I+ S +EGCLSIP V R+ + VR + + Sbjct: 66 DGCAPEPLVFINPVILDRSGSVE-SEEGCLSIPGVTDKVMRAEAVRVRAQNAFGESFERE 124 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A GLLA C+QHE+DHL+G LFID+LS LKR I KK+ K ++ ++ Sbjct: 125 AGGLLAICIQHEIDHLDGRLFIDYLSPLKRQRIRKKLEKALRQKE 169 >gi|207727558|ref|YP_002255952.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum MolK2] gi|206590795|emb|CAQ56407.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum MolK2] Length = 174 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ ID+ + Sbjct: 14 YPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDVSES-- 71 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + + ADG Sbjct: 72 RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELDADG 131 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LK++ I K+ K Sbjct: 132 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 167 >gi|207741949|ref|YP_002258341.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum IPO1609] gi|206593335|emb|CAQ60262.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum IPO1609] Length = 174 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ ID+ + Sbjct: 14 YPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDVSES-- 71 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + + ADG Sbjct: 72 RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELDADG 131 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LK++ I K+ K Sbjct: 132 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 167 >gi|113474637|ref|YP_720698.1| peptide deformylase [Trichodesmium erythraeum IMS101] gi|110165685|gb|ABG50225.1| peptide deformylase [Trichodesmium erythraeum IMS101] Length = 187 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/149 (43%), Positives = 95/149 (63%), Gaps = 2/149 (1%) Query: 5 PLVIF--PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL I+ D LR+ ++ + K++SD+ L+ ML+ MY+ DGIGLAA Q+ V +++VID Sbjct: 16 PLEIYYLGDRSLRQSAKRVAKVDSDMRKLVREMLQTMYTADGIGLAAPQVNVQKQVIVID 75 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P+V INP I +S+D ++QEGCLSIP DV+R + I V Y D N + Q Sbjct: 76 CEPTNSATPPLVLINPTIKKYSNDICLFQEGCLSIPGVYLDVQRPSEIEVAYKDENGRPQ 135 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + A LL+ +QHE+DHL GILF+D + Sbjct: 136 TLQAQELLSRAIQHEMDHLQGILFVDRVE 164 >gi|269102516|ref|ZP_06155213.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162414|gb|EEZ40910.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP 102761] Length = 171 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 74/157 (47%), Positives = 100/157 (63%), Gaps = 5/157 (3%) Query: 10 PDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67 P+P LR + + + ++ I L+D+ML+ MY T +GIGLAA Q+G ++VIDL + Sbjct: 10 PNPKLRVQAEDVVDVKAEHIQTLVDDMLQTMYETGNGIGLAAPQVGRKEAIIVIDLSEE- 68 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R P VFINPKI+ ++ V QEGCLS+PDY ADV+R I + +D + + D Sbjct: 69 -RNEPQVFINPKIVR-GENPVVGQEGCLSVPDYYADVERFEKIAITALDRDGNEINMERD 126 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LA LQHE+DHL GILFID+LS LKR M KK+ K Sbjct: 127 DFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKK 163 >gi|39995240|ref|NP_951191.1| polypeptide deformylase [Geobacter sulfurreducens PCA] gi|39982002|gb|AAR33464.1| polypeptide deformylase [Geobacter sulfurreducens PCA] Length = 182 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 1/164 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +PDP+L++ + P+ IN L+ +M E MY G+GLAA QIGV R++VID+ Sbjct: 18 RTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVIDV 77 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 R +V INP +I + S +EGCLS+P Y A+V R + V+ ++ + + Sbjct: 78 SQRDERPELIVCINP-VIIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEEVV 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+GLLA QHE+DHL+G+LF+DHLS LK++M KK ++ + Sbjct: 137 HRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTE 180 >gi|284040267|ref|YP_003390197.1| peptide deformylase [Spirosoma linguale DSM 74] gi|283819560|gb|ADB41398.1| peptide deformylase [Spirosoma linguale DSM 74] Length = 190 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 100/176 (56%), Gaps = 11/176 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ + DP+LR+ ++ IE + D+ L NM E MY+ GIGLAA QIG R+ V+D + Sbjct: 4 PIIAYGDPVLRKRAKDIEPGSLDVKTLSQNMFETMYAASGIGLAAPQIGQSVRMFVVDGE 63 Query: 65 -----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D + VFINP+II + D ++EGCLSIP R +V R I +R Sbjct: 64 PLNEDEPEEDIDQSLVGFKKVFINPEIIEEAGDDWGFEEGCLSIPGIRGEVFRPEIIVIR 123 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Y D + DG+ A +QHE DHL+G LF D+L L+R +I KK+S + + + Sbjct: 124 YFDVDWNEHEEEYDGMAARIIQHEYDHLDGKLFTDYLPSLRRTLIKKKLSDISKGK 179 >gi|220931832|ref|YP_002508740.1| peptide deformylase [Halothermothrix orenii H 168] gi|254767591|sp|B8CWS6|DEF_HALOH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219993142|gb|ACL69745.1| peptide deformylase [Halothermothrix orenii H 168] Length = 154 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 96/148 (64%), Gaps = 4/148 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR ++P+ +I ++LIDNM+E MY +G+GLAA Q+GV R++V+D + + Sbjct: 11 DPVLRSKAKPVTEITKKTLSLIDNMVETMYQAEGVGLAAPQVGVSKRIIVVDTGEG---Q 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+II ++ + +EGCLS+P V R++ +TV+ ++ + I A+G L Sbjct: 68 GLIELINPEIIE-TEGKDIMEEGCLSVPGQTGKVIRASKVTVKGLNRGGKEVRIRAEGFL 126 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMI 158 A QHE+DHLNGILFID + R+ +MI Sbjct: 127 ARAFQHEIDHLNGILFIDKVVRIGEEMI 154 >gi|332885374|gb|EGK05623.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836] Length = 187 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 104/171 (60%), Gaps = 7/171 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+V I K ++ LIDNM E MY+ DGIGLAA QIG+ RL VIDL+ Sbjct: 4 PIYLYGHPVLRKVGEDITKDYPNLGTLIDNMFETMYNADGIGLAAPQIGLAIRLFVIDLE 63 Query: 65 DHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN- 118 A + VFINP+I+ S + +EGCLSIP V+R I ++Y+D N Sbjct: 64 PLAEDEPKYAGFKKVFINPRIVEESGEPVKLEEGCLSIPGINEMVERKERIRIQYLDENF 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 H +Y D A C+QHE DH+ G+LF+D +S +++ +I K++ L++ R Sbjct: 124 VAHDEVYED-FFARCIQHEYDHIEGVLFVDLISGIRKQLIKSKLNNLLKGR 173 >gi|68171578|ref|ZP_00544952.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88658603|ref|YP_506903.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas] gi|67999004|gb|EAM85681.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88600060|gb|ABD45529.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas] Length = 188 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 17/176 (9%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---- 61 +V PD L S +EK++ I L+D+M E M++ G+GLAAVQ+GV R++V+ Sbjct: 6 IVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPE 65 Query: 62 DLQDHAHRKN-------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 + +D +N P INPKI+ S + +EGCLS+P Y + R Sbjct: 66 EFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQ 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I V+Y+D N II A G LA CLQHE+DHLNG +F+ +LS+ KRD +K+ K Sbjct: 126 RIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKK 181 >gi|323496228|ref|ZP_08101286.1| peptide deformylase [Vibrio sinaloensis DSM 21326] gi|323318505|gb|EGA71458.1| peptide deformylase [Vibrio sinaloensis DSM 21326] Length = 167 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 71/165 (43%), Positives = 106/165 (64%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP L+ + +E +S I LID+ML+ +Y TD GIGLA+ Q+G +V+IDL Sbjct: 6 ILTAPDPKLKTQAHKVEDFSS-IQTLIDDMLDTLYDTDNGIGLASTQVGRSEAVVIIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D+ R P++ +NP++++ S ++ QEGCLS+PDY A+V+R + V D + I Sbjct: 65 DN--RDEPLILVNPEVVSGSHK-ALGQEGCLSVPDYYAEVERYTSVVVSAQDRHGNSITI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +D LA +QHE+DHL G LFID+LS LKR M KK+ K ++ R Sbjct: 122 ESDDFLAIVMQHEIDHLAGNLFIDYLSPLKRQMAMKKVKKHLKSR 166 >gi|17230571|ref|NP_487119.1| peptide deformylase [Nostoc sp. PCC 7120] gi|23396564|sp|Q8YSK6|DEF1_ANASP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|17132173|dbj|BAB74778.1| polypeptide deformylase [Nostoc sp. PCC 7120] Length = 187 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 62/140 (44%), Positives = 89/140 (63%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I K++ + LI +ML+ MYS+DGIGLAA Q+G+ +L+VID + Sbjct: 24 DRVLRQPAKRITKVDDETRQLIRDMLQTMYSSDGIGLAAPQVGINKQLIVIDCEPDNPAN 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP I S + QEGCLSIP DVKR + V Y D N + Q + A LL Sbjct: 84 PPLILINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLL 143 Query: 131 ATCLQHELDHLNGILFIDHL 150 C+QHE+DHLNG++F+D + Sbjct: 144 GRCIQHEMDHLNGVVFVDRV 163 >gi|189485012|ref|YP_001955953.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|238058216|sp|B1GZ10|DEF_UNCTG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|170286971|dbj|BAG13492.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 168 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 94/158 (59%), Gaps = 3/158 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + + DP LR+ + + +IN I L +MLE MYS G+GLAA Q+G+L R V Sbjct: 1 MAKLKIKKYGDPALRKRAEAVSEINEIIKELASDMLETMYSASGVGLAAPQVGILLRFCV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++K+P+V INP+II+ + + +EGCLS P + +V R I Y D N Sbjct: 61 IDVD--PNKKSPIVMINPEIISGENKITA-EEGCLSFPGFYGNVNRFENIIAGYTDLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Q I A LA LQHE+DHL+ LFID+L KR+ I Sbjct: 118 RQEIKAQNFLAKALQHEIDHLDAKLFIDYLPDWKRESI 155 >gi|257063703|ref|YP_003143375.1| peptide deformylase [Slackia heliotrinireducens DSM 20476] gi|256791356|gb|ACV22026.1| peptide deformylase [Slackia heliotrinireducens DSM 20476] Length = 180 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 59/144 (40%), Positives = 83/144 (57%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V +PDP LR V P + + + L M MY+ +G GLAA Q+GV R++VID Sbjct: 7 PVVTYPDPTLREVCVPCDPSDKSLKKLARQMANTMYANNGCGLAAPQVGVNKRIIVIDCD 66 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +NP+ +NP+II + EGCLS P +++R + V+Y D N + II Sbjct: 67 QDSGTRNPITLLNPEIIETRGPEELDGEGCLSCPGITVEIRRPTYAIVKYTDLNGEDWII 126 Query: 125 YADGLLATCLQHELDHLNGILFID 148 DGLL CLQHE+DHLNGI + Sbjct: 127 EGDGLLGRCLQHEIDHLNGITLFE 150 >gi|187930742|ref|YP_001901229.1| peptide deformylase [Ralstonia pickettii 12J] gi|187727632|gb|ACD28797.1| peptide deformylase [Ralstonia pickettii 12J] Length = 171 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +V++P+ ++ I L+ +M E MY G+GLAA Q+ V R++ ID+ + Sbjct: 9 YPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVITIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ SD+ V+ EGCLS+PD V R A + VR ++ + AD Sbjct: 67 RDELRVFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGDTFELEADD 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LK+ I K+ K Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKK 162 >gi|242277625|ref|YP_002989754.1| peptide deformylase [Desulfovibrio salexigens DSM 2638] gi|242120519|gb|ACS78215.1| peptide deformylase [Desulfovibrio salexigens DSM 2638] Length = 170 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/162 (40%), Positives = 95/162 (58%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P+ L+ V +E++ ++ +IDNM+E MY DG+GLAA Q+GV RL+VID Sbjct: 5 ILAYPEESLKEVCSRVEEVTPELKEIIDNMIETMYEDDGVGLAAPQVGVQKRLIVIDPSG 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R + V INP+I+ S +E CLS P ++ +KR +TV D I Sbjct: 65 PKERTDLQVIINPEIVEKSSQKVDSEEACLSCPGFKCVIKRHETVTVTGTDPEGNDVRIE 124 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 AD LA LQHE+DHL+G L +D + RLKR M KK+ K ++ Sbjct: 125 ADDFLAIVLQHEIDHLDGTLIVDRVGRLKRAMYDKKVKKWLK 166 >gi|126174517|ref|YP_001050666.1| peptide deformylase [Shewanella baltica OS155] gi|153000548|ref|YP_001366229.1| peptide deformylase [Shewanella baltica OS185] gi|160875185|ref|YP_001554501.1| peptide deformylase [Shewanella baltica OS195] gi|217973486|ref|YP_002358237.1| peptide deformylase [Shewanella baltica OS223] gi|304408620|ref|ZP_07390241.1| peptide deformylase [Shewanella baltica OS183] gi|307305448|ref|ZP_07585196.1| peptide deformylase [Shewanella baltica BA175] gi|125997722|gb|ABN61797.1| peptide deformylase [Shewanella baltica OS155] gi|151365166|gb|ABS08166.1| peptide deformylase [Shewanella baltica OS185] gi|160860707|gb|ABX49241.1| peptide deformylase [Shewanella baltica OS195] gi|217498621|gb|ACK46814.1| peptide deformylase [Shewanella baltica OS223] gi|304352441|gb|EFM16838.1| peptide deformylase [Shewanella baltica OS183] gi|306911751|gb|EFN42176.1| peptide deformylase [Shewanella baltica BA175] gi|315267381|gb|ADT94234.1| peptide deformylase [Shewanella baltica OS678] Length = 163 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 101/160 (63%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R ++P++ I + + ID+++E MY TD GIGLAA Q+G ++VIDL Sbjct: 6 ILTIPDERLKRKAQPVKDIEA-VQGFIDDLIETMYHTDDGIGLAATQVGSTDAIIVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R P V INP+I+ S +F V +EGCLSIP YRA V R + V +D + I Sbjct: 65 DG--RDQPQVLINPEIVEKSGEF-VGEEGCLSIPGYRAKVSRFEKVKVTALDRTGKAIEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 122 ETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRK 161 >gi|298504245|gb|ADI82968.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens KN400] Length = 167 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 1/164 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +PDP+L++ + P+ IN L+ +M E MY G+GLAA QIGV R++VID+ Sbjct: 3 RTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVIDV 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 R +V INP +I + S +EGCLS+P Y A+V R + V+ ++ + + Sbjct: 63 SQRDERPELIVCINP-VIIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEEVV 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+GLLA QHE+DHL+G+LF+DHLS LK++M KK ++ + Sbjct: 122 HRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTE 165 >gi|322421893|ref|YP_004201116.1| peptide deformylase [Geobacter sp. M18] gi|320128280|gb|ADW15840.1| peptide deformylase [Geobacter sp. M18] Length = 168 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 110/169 (65%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M KP+V +PDPIL++V P++ I+ +I L++++++ M++ G +G+AA Q+GV R+ Sbjct: 1 MAVKPIVTYPDPILKQVCPPVQAIDVEIRQLVEDLVDTMHAGPGSVGVAAPQVGVARRVC 60 Query: 60 VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 VID+ + H K ++ INP+I+ S +V +EGC+S+PDY DV+R+ +T+R+ Sbjct: 61 VIDVSKNRHGKENNHGLLLMINPEILAKSG-AAVMREGCMSVPDYTGDVERATELTLRFT 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + A G A +QHE+DHL+G+LF+D ++ LK + +K K Sbjct: 120 EPDGGVREFEASGFEAVAIQHEMDHLDGLLFLDRIASLKTGLFRRKSYK 168 >gi|268316440|ref|YP_003290159.1| peptide deformylase [Rhodothermus marinus DSM 4252] gi|262333974|gb|ACY47771.1| peptide deformylase [Rhodothermus marinus DSM 4252] Length = 189 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 9/156 (5%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ DPILR ++P+ + ++ L+D+M+E M++ GIGLAA Q+G R+ V+DL Sbjct: 4 PIHVYGDPILRERAQPVAADSPELQQLLDDMVETMHAASGIGLAAPQVGRRERVFVVDLT 63 Query: 64 --------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + PM FINP+I+ S++ ++EGCLSIPD R V+R + +RY+ Sbjct: 64 PMKEELEAEGETLPPMPMFFINPEIVWTSEEQCSFEEGCLSIPDVREVVERPVAVRIRYL 123 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + Q + A G+LA +QHE DHL GILFID +S Sbjct: 124 DRQFRPQELEARGMLARVIQHEYDHLEGILFIDRIS 159 >gi|297588336|ref|ZP_06946979.1| peptide deformylase [Finegoldia magna ATCC 53516] gi|297573709|gb|EFH92430.1| peptide deformylase [Finegoldia magna ATCC 53516] Length = 162 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 66/150 (44%), Positives = 92/150 (61%), Gaps = 3/150 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR+ SR ++KI+ I ++D+M E MY GIGLA VQ+G+L R+VVID+QD + Sbjct: 11 DPILRKKSREVKKIDDRIKQIVDDMFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK- 69 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 MV INPKI+ SD+ + EGCLS+P V+R +TV Y D + Q A Sbjct: 70 --MVLINPKIVERSDEKQINVEGCLSVPGKNGYVERPKTVTVEYTDLDGNIQRKTATDYK 127 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A C HELDHL+G+L+ D + L + + + Sbjct: 128 AHCFCHELDHLDGVLYTDKVLNLSDEEVER 157 >gi|22299219|ref|NP_682466.1| peptide deformylase [Thermosynechococcus elongatus BP-1] gi|39930888|sp|Q8DIB4|DEF_THEEB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22295401|dbj|BAC09228.1| polypeptide deformylase [Thermosynechococcus elongatus BP-1] Length = 188 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 91/141 (64%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ + K++ I ++ ML+ MYS DGIGLAA Q+G+ +++VID+ Sbjct: 24 DRVLRQPAKRVSKVDDSIRDIARKMLQTMYSADGIGLAAPQVGINKQILVIDIHPDDPEA 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP I FS++ V QEGCLSIP +V+R A + V Y D + Q+I A GLL Sbjct: 84 EPLVMINPVIKDFSEELEVCQEGCLSIPGVYLEVRRPAMVEVSYKDEWGRPQVIMAGGLL 143 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A +QHE+DHL G++F+D + Sbjct: 144 ARAIQHEIDHLTGVMFVDRVE 164 >gi|254229199|ref|ZP_04922618.1| peptide deformylase [Vibrio sp. Ex25] gi|262395549|ref|YP_003287402.1| peptide deformylase [Vibrio sp. Ex25] gi|151938284|gb|EDN57123.1| peptide deformylase [Vibrio sp. Ex25] gi|262339143|gb|ACY52937.1| peptide deformylase [Vibrio sp. Ex25] Length = 168 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 67/162 (41%), Positives = 107/162 (66%), Gaps = 5/162 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67 PDP L+ + + + S + LID+MLE +Y+T +GIGLA+ Q+G +VVID+ D Sbjct: 9 IPDPRLKVKAEKVTDV-STVQTLIDDMLETLYATGNGIGLASTQVGRKEAVVVIDISDE- 66 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R +P++ +NP++++ ++ ++ QEGCLS+P+Y ADV+R + V +D + I +D Sbjct: 67 -RNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDGNPMTIESD 124 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 125 EFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166 >gi|46581767|ref|YP_012575.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough] gi|120601080|ref|YP_965480.1| peptide deformylase [Desulfovibrio vulgaris DP4] gi|46451190|gb|AAS97835.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough] gi|120561309|gb|ABM27053.1| peptide deformylase [Desulfovibrio vulgaris DP4] gi|311232326|gb|ADP85180.1| peptide deformylase [Desulfovibrio vulgaris RCH1] Length = 171 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 63/140 (45%), Positives = 87/140 (62%) Query: 30 NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV 89 L +M+E MY DGIGLAA Q+G RL+V+D+ R++ M FINP++ D+ Sbjct: 29 QLAADMVETMYREDGIGLAAPQVGANCRLIVVDVSGPEKRESLMTFINPRLEPLGDEKVE 88 Query: 90 YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +EGCLS+P RA V+R + + D + + ADGLLA CLQHE+DHL G LFID Sbjct: 89 SEEGCLSVPALRAKVERHERVRLTARDLDGNEVCMDADGLLAICLQHEIDHLGGTLFIDR 148 Query: 150 LSRLKRDMITKKMSKLVQLR 169 +SRLKR + K+ K ++ R Sbjct: 149 ISRLKRSLYDAKVKKWLKAR 168 >gi|75907053|ref|YP_321349.1| peptide deformylase [Anabaena variabilis ATCC 29413] gi|75700778|gb|ABA20454.1| peptide deformylase [Anabaena variabilis ATCC 29413] Length = 187 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 63/140 (45%), Positives = 88/140 (62%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I K++ + LI +ML+ MYS DGIGLAA Q+G+ +L+VID + Sbjct: 24 DRVLRQPAKRITKVDDETRQLIRDMLQTMYSNDGIGLAAPQVGINKQLIVIDCEPDNPAN 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP I S + QEGCLSIP DVKR + V Y D N + Q + A LL Sbjct: 84 PPLVLINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLL 143 Query: 131 ATCLQHELDHLNGILFIDHL 150 C+QHE+DHLNG++F+D + Sbjct: 144 GRCIQHEMDHLNGVVFVDRV 163 >gi|299068355|emb|CBJ39579.1| peptide deformylase [Ralstonia solanacearum CMR15] Length = 169 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ ID+ + Sbjct: 9 YPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDISES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ SD V+ EGCLS+PD V+R + VR ++ + + DG Sbjct: 67 RDELRVFINPEIVWASDARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELETDG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LK++ I K+ K Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 162 >gi|217968557|ref|YP_002353791.1| peptide deformylase [Thauera sp. MZ1T] gi|217505884|gb|ACK52895.1| peptide deformylase [Thauera sp. MZ1T] Length = 167 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 3/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L V+ P+ +++ +I LI +M E MY GIGLAA Q+ V R+VVID+ Sbjct: 5 PILRYPDPRLHTVAAPVGRVDDEIRRLIADMAETMYEAPGIGLAATQVDVHKRIVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + M INP+I+ S + V +EGCLS+P V R+ + VR ++ + Sbjct: 65 ED--KSGLMALINPEILERSGE-QVCEEGCLSVPGIYEKVSRAERVKVRALNEKGESFEF 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHL+G +F+++LS+LK I K++K Sbjct: 122 EADGLLAVCVQHEIDHLDGKVFVEYLSQLKLGRIKSKLAK 161 >gi|15894999|ref|NP_348348.1| peptide deformylase [Clostridium acetobutylicum ATCC 824] gi|3023622|sp|O05100|DEF1_CLOAB RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|15024688|gb|AAK79688.1|AE007681_9 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC 824] gi|1905954|gb|AAB50347.1| deformylase [Clostridium acetobutylicum ATCC 824] gi|325509136|gb|ADZ20772.1| peptide deformylase [Clostridium acetobutylicum EA 2018] Length = 150 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 96/144 (66%), Gaps = 6/144 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ SR +EKI+ ++ LID+M E MY+ DG+GLAA Q+G+L RLVVID+ + Sbjct: 9 YGDELLRKKSRKVEKIDKRLLTLIDDMFETMYNADGVGLAAPQVGILKRLVVIDVGE--- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+V INP+I+ S +V EGCLSIP+ + +V+R ++ + ++ + +I A+ Sbjct: 66 --GPVVLINPEILETSGK-AVDVEGCLSIPERQGEVERPTYVKAKALNEKGEEIVIEAED 122 Query: 129 LLATCLQHELDHLNGILFIDHLSR 152 L A + HE DHLNG+LF+D L+ Sbjct: 123 LFARAICHETDHLNGVLFVDKLAE 146 >gi|261409931|ref|YP_003246172.1| peptide deformylase [Paenibacillus sp. Y412MC10] gi|261286394|gb|ACX68365.1| peptide deformylase [Paenibacillus sp. Y412MC10] Length = 172 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 65/151 (43%), Positives = 100/151 (66%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG GLAA QIG+L RL+ Sbjct: 1 MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + + INP+I+ D + E CLS P Y VKR+ +TV+ ++ Sbjct: 61 VMDCGEGL-----IELINPEIVEM-DGEQMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Q I+ + LA C+QHE+DHLNGILF+DH+ Sbjct: 115 QTVILKGEDYLARCMQHEIDHLNGILFVDHV 145 >gi|313144549|ref|ZP_07806742.1| peptide deformylase [Helicobacter cinaedi CCUG 18818] gi|313129580|gb|EFR47197.1| peptide deformylase [Helicobacter cinaedi CCUG 18818] Length = 179 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 97/151 (64%), Gaps = 5/151 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----Q 64 +P+PILR+ S +E + + L+D+M E M + G+GLAA+Q+G+ R++VI+L Sbjct: 15 YPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVINLPRDED 74 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++++ + INP +T DD ++EGCLS+P++ VKR ++V Y D +I+ Sbjct: 75 KQQYKEDLLEVINPTFLTQEDDIE-WEEGCLSVPEFYESVKRFNKVSVAYKDRFGNDKIL 133 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A+G LA LQHE+DHLNGILF+D L L+R Sbjct: 134 QAEGFLAVALQHEIDHLNGILFVDKLPILRR 164 >gi|295675125|ref|YP_003603649.1| peptide deformylase [Burkholderia sp. CCGE1002] gi|295434968|gb|ADG14138.1| peptide deformylase [Burkholderia sp. CCGE1002] Length = 167 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 101/159 (63%), Gaps = 2/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + FINP+I+ SD + +EGCLS+P +V+R+ + VR ++ + + +G Sbjct: 67 HDELLAFINPEIVWSSDQRKLSEEGCLSVPGIYDNVERAEKVRVRALNQKGETFELDCEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 127 LLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLAH 165 >gi|153836422|ref|ZP_01989089.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] gi|149750324|gb|EDM61069.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] Length = 168 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 68/162 (41%), Positives = 107/162 (66%), Gaps = 5/162 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67 PDP L+ + + + S I LID+MLE +Y+T +GIGLA+ Q+G +VVID+ D Sbjct: 9 IPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVVVIDISDE- 66 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R +P++ +NP++++ ++ ++ QEGCLS+P+Y ADV+R + V +D + I +D Sbjct: 67 -RNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDGSPITIESD 124 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 125 EFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166 >gi|33860628|ref|NP_892189.1| peptide deformylase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39930841|sp|Q7V3K7|DEF_PROMP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33633570|emb|CAE18527.1| putative formylmethionine deformylase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 201 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 92/141 (65%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR ++ I K+++ I NL +ML+ MY+ GIGLAA QIG+ L+VID+ Sbjct: 38 DDVLRENAKRISKVDNSIRNLAKDMLQSMYAAKGIGLAAPQIGIKKELLVIDVNFEDAAA 97 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+I + + Y+EGCLSIP +V R + I +R+ D + + + ADGLL Sbjct: 98 EPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLRFRDEMGRPRKMKADGLL 157 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A C+QHE+DHLNG+LF+D ++ Sbjct: 158 ARCIQHEMDHLNGVLFVDRVT 178 >gi|224438109|ref|ZP_03659044.1| peptide deformylase [Helicobacter cinaedi CCUG 18818] Length = 175 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 97/151 (64%), Gaps = 5/151 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----Q 64 +P+PILR+ S +E + + L+D+M E M + G+GLAA+Q+G+ R++VI+L Sbjct: 11 YPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVINLPRDED 70 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++++ + INP +T DD ++EGCLS+P++ VKR ++V Y D +I+ Sbjct: 71 KQQYKEDLLEVINPTFLTQEDDIE-WEEGCLSVPEFYESVKRFNKVSVAYKDRFGNDKIL 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A+G LA LQHE+DHLNGILF+D L L+R Sbjct: 130 QAEGFLAVALQHEIDHLNGILFVDKLPILRR 160 >gi|28900639|ref|NP_800294.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|260365515|ref|ZP_05778052.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|260877578|ref|ZP_05889933.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|260895409|ref|ZP_05903905.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|260901682|ref|ZP_05910077.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|31076642|sp|Q87I22|DEF2_VIBPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|28809019|dbj|BAC62127.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|308085281|gb|EFO34976.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|308090907|gb|EFO40602.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|308108907|gb|EFO46447.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|308114324|gb|EFO51864.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|328470579|gb|EGF41490.1| peptide deformylase [Vibrio parahaemolyticus 10329] Length = 168 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 68/162 (41%), Positives = 107/162 (66%), Gaps = 5/162 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67 PDP L+ + + + S I LID+MLE +Y+T +GIGLA+ Q+G +VVID+ D Sbjct: 9 IPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVVVIDISDE- 66 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R +P++ +NP++++ ++ ++ QEGCLS+P+Y ADV+R + V +D + I +D Sbjct: 67 -RNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDGNPITIESD 124 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 125 EFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166 >gi|253997550|ref|YP_003049614.1| peptide deformylase [Methylotenera mobilis JLW8] gi|253984229|gb|ACT49087.1| peptide deformylase [Methylotenera mobilis JLW8] Length = 166 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L V++P++++N+ + LID+M E MY+ GIGLAA Q+ +L+++D + Sbjct: 9 YPDPRLHTVAKPVKEVNAAVHRLIDDMAETMYAAPGIGLAATQVDQHVQLLLVDTSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + VFINPKI+ D VY+EGCLS+P V R+ I V + + + + A G Sbjct: 67 KDQLQVFINPKILE-RDGEQVYEEGCLSVPGVYESVTRAEKILVEALGKDGKRFTLEAHG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LL+ C+QHE+DHL G +F+++LS LKR+ I KM K Sbjct: 126 LLSVCIQHEMDHLQGKVFVEYLSPLKRNRIKNKMLK 161 >gi|91205496|ref|YP_537851.1| polypeptide deformylase [Rickettsia bellii RML369-C] gi|157827211|ref|YP_001496275.1| polypeptide deformylase [Rickettsia bellii OSU 85-389] gi|91069040|gb|ABE04762.1| Polypeptide deformylase [Rickettsia bellii RML369-C] gi|157802515|gb|ABV79238.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389] Length = 183 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 101/163 (61%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ IE ++ +I +ID ML M +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQGELIEVVDDNIRTIIDKMLNTMQIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P++FINP+I FS D + E LS P A + RS I + Y+D + Q + Sbjct: 70 N-NKSSPIIFINPEITYFSSDKQTFMERSLSFPGIEAPITRSKAIKINYLDYHGNKQELE 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A LAT +QHE+D+LNG +F+DHLS+LKRD + KKM K +++ Sbjct: 129 AQDFLATVIQHEVDYLNGKVFLDHLSKLKRDTLLKKMLKYIKM 171 >gi|256827225|ref|YP_003151184.1| peptide deformylase [Cryptobacterium curtum DSM 15641] gi|256583368|gb|ACU94502.1| peptide deformylase [Cryptobacterium curtum DSM 15641] Length = 175 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 85/150 (56%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V+ PDPILR+ + + + + +L M E MY +G GLAA Q+GVL RL+VID Sbjct: 3 IVLSPDPILRQRAEEADIADESLKSLAQQMAETMYENNGCGLAAPQVGVLKRLIVIDCDT 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +NP+ INP I+ + ++ EGCLS+P ++R AF V Y D + I Sbjct: 63 ESEERNPITLINPVILETAGEWETEGEGCLSVPGITVPIRRRAFARVEYRDLDGNVCTIE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 DGLL CLQHE+DHLNG + + R Sbjct: 123 GDGLLGRCLQHEIDHLNGKTLFESCDPITR 152 >gi|284047692|ref|YP_003398031.1| peptide deformylase [Acidaminococcus fermentans DSM 20731] gi|283951913|gb|ADB46716.1| peptide deformylase [Acidaminococcus fermentans DSM 20731] Length = 158 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 66/137 (48%), Positives = 88/137 (64%), Gaps = 4/137 (2%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 PILR + P+ + + + L+ +M E MY+ +G GLAA QIG+ RLVVID D A + Sbjct: 12 PILREKAVPVTRFDKKLARLLKDMAETMYAANGCGLAAPQIGLSKRLVVIDAGDGAGIRE 71 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 F+NP ++T + +V EGCLS+PDY +VKR+A ITV + D H + ADGLLA Sbjct: 72 ---FVNP-VLTDPEGEAVDSEGCLSVPDYEGEVKRAARITVHFQDRKGDHYRLTADGLLA 127 Query: 132 TCLQHELDHLNGILFID 148 LQHE DHL G+LFID Sbjct: 128 RALQHECDHLEGVLFID 144 >gi|332830442|gb|EGK03070.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286] Length = 187 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 104/172 (60%), Gaps = 9/172 (5%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ +LR+ SR I ++ LI+NM E MY+ DGIGLAA QIG+ RL VIDL+ Sbjct: 4 PIYLYGHSVLRKKSREISSDYPNLKELIENMFETMYNADGIGLAAPQIGLDIRLFVIDLE 63 Query: 65 DHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 A NP+ VFINP II + + +EGCLSIP V R+ I ++Y+D N Sbjct: 64 PLA-EDNPIYSGFKKVFINPVIIEETGEVVKMEEGCLSIPGINEGVDRNEKIRIQYLDEN 122 Query: 119 -AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 H +Y D A C+QHE DH+ GILFID +S +++ +I K++ L++ R Sbjct: 123 FVSHDEVY-DAFFARCIQHEYDHIEGILFIDKISGIRKQLIKSKLNNLIKGR 173 >gi|227821802|ref|YP_002825772.1| peptide deformylase [Sinorhizobium fredii NGR234] gi|227340801|gb|ACP25019.1| peptide deformylase-like protein [Sinorhizobium fredii NGR234] Length = 163 Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 99/165 (60%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP+P L + + + +S + +L+D++ + M + GIG+ A IGVL R+ V Sbjct: 1 MALRPIIRFPNPALGMSAEMVTRFDSSLRSLVDDLTDTMRAAPGIGITAPHIGVLQRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+L+ A P F+NP++I S++ + EG +S+P +V+R I VRY + + Sbjct: 61 IELERQA---GPRTFVNPQMIWCSEETERHSEGSVSMPGISEEVERPTSIRVRYQTISGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A GL+A CLQHE+D L+GI +I LSRLKR+ K+ KL Sbjct: 118 TLEEEASGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAVKRFEKL 162 >gi|83816785|ref|YP_445415.1| peptide deformylase [Salinibacter ruber DSM 13855] gi|294507298|ref|YP_003571356.1| peptide deformylase [Salinibacter ruber M8] gi|123739741|sp|Q2S316|DEF_SALRD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|83758179|gb|ABC46292.1| peptide deformylase [Salinibacter ruber DSM 13855] gi|294343626|emb|CBH24404.1| Peptide deformylase [Salinibacter ruber M8] Length = 195 Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 93/156 (59%), Gaps = 9/156 (5%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ LR + P+++ + LIDNM+E M++ GIGLAA Q+G RL V+DL Sbjct: 4 PIYVYGHEALRNETDPVQENTEALQELIDNMIETMHNAAGIGLAAPQVGRTERLFVVDLT 63 Query: 65 DHAHR---------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A PMVFINP+I+ S+D + +EGCLSIP+ R V R I +RY Sbjct: 64 PMADEIAEAGEPLPPQPMVFINPEIVEESEDTAEMEEGCLSIPEVREAVARPERIRMRYR 123 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + Q + A G+L+ LQHE DHL+G+LF D+LS Sbjct: 124 DREFEEQELEAGGMLSRVLQHERDHLDGVLFTDYLS 159 >gi|88807213|ref|ZP_01122725.1| peptide deformylase [Synechococcus sp. WH 7805] gi|88788427|gb|EAR19582.1| peptide deformylase [Synechococcus sp. WH 7805] Length = 183 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 95/156 (60%), Gaps = 7/156 (4%) Query: 3 KKPLVIFP-------DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 K+PL P D +LR +R I K++ + +L +ML MY+ GIGLAA Q+GV Sbjct: 5 KEPLETAPLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVH 64 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +L+VIDL P+V INP+II+ S Y+EGCLSIP DV R + + V + Sbjct: 65 QQLLVIDLDPETASSPPLVLINPEIISASASLDTYEEGCLSIPGVYLDVVRPSAVQVSFR 124 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + + + ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 125 DEMGRPKTLKADGLMARCIQHEMDHLTGVLFVDRVT 160 >gi|89074343|ref|ZP_01160825.1| peptide deformylase [Photobacterium sp. SKA34] gi|89049830|gb|EAR55371.1| peptide deformylase [Photobacterium sp. SKA34] Length = 170 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/162 (45%), Positives = 102/162 (62%), Gaps = 5/162 (3%) Query: 10 PDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67 P+P LR + + + ++ I LID+ML MY T +GIGLAA Q+G ++VIDL + Sbjct: 10 PNPKLRVQAEDVADVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESIIVIDLSEE- 68 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R P VF+NPKI+ ++ V QEGCLS+PDY ADV+R I + +D + + D Sbjct: 69 -RNEPHVFVNPKIVR-GENPVVGQEGCLSVPDYYADVERFEKIELTALDRDGNDIHLERD 126 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA LQHE+DHL GILFID+LS LKR M KK+ K ++ + Sbjct: 127 DFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLKAQ 168 >gi|269968185|ref|ZP_06182216.1| peptide deformylase [Vibrio alginolyticus 40B] gi|269827183|gb|EEZ81486.1| peptide deformylase [Vibrio alginolyticus 40B] Length = 168 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 106/160 (66%), Gaps = 5/160 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67 PDP L+ + + + S + LID+MLE +Y+T +GIGLA+ Q+G +VVID+ D Sbjct: 9 IPDPRLKVKAEKVTDV-STVQTLIDDMLETLYATGNGIGLASTQVGRKEAVVVIDISDE- 66 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R +P++ +NP++++ ++ ++ QEGCLS+P+Y ADV+R + V +D + I +D Sbjct: 67 -RNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDGNPITIESD 124 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ Sbjct: 125 EFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVK 164 >gi|189347171|ref|YP_001943700.1| peptide deformylase [Chlorobium limicola DSM 245] gi|238692163|sp|B3EE19|DEF_CHLL2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189341318|gb|ACD90721.1| peptide deformylase [Chlorobium limicola DSM 245] Length = 185 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P+ I+ D +LR+ + P+E ++ ++ L+ NM E MYS GIGLAA Q+G RL+V+D Sbjct: 4 PINIYSDDVLRQQALPLEGVDKEVEELLGNMFETMYSAPGIGLAAPQVGRSLRLLVLDIS 63 Query: 63 -LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++++A+ K PMV INP+I+ + +EGCLS+P + DV R + I++ Y D + + Sbjct: 64 CMREYANVK-PMVVINPEIVAVKG-YRSMEEGCLSLPGLQGDVVRPSSISLNYRDEHFEG 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q GLLA LQHE+DHL+G LF+D L + +R + K++ L R Sbjct: 122 QNAEFSGLLARVLQHEIDHLDGRLFVDRLQKKERRKVQKELDALASGR 169 >gi|116073817|ref|ZP_01471079.1| peptide deformylase [Synechococcus sp. RS9916] gi|116069122|gb|EAU74874.1| peptide deformylase [Synechococcus sp. RS9916] Length = 201 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/141 (44%), Positives = 88/141 (62%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ +R I K++ + L +ML MY+ GIGLAA Q+GV +L+VIDL Sbjct: 38 DEVLRQEARRISKVDESVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDLDLETPSS 97 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I T S Y+EGCLSIP DV R I + Y D + + + ADGL+ Sbjct: 98 PPLVLINPEITTASATVDTYEEGCLSIPGVYLDVVRPTAIQLSYRDEMGRPKTMKADGLM 157 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A C+QHE+DHL G+LF+D ++ Sbjct: 158 ARCIQHEMDHLKGVLFVDRVT 178 >gi|134093408|ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicoxydans] gi|133737311|emb|CAL60354.1| Peptide deformylase (PDF) [Herminiimonas arsenicoxydans] Length = 176 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 97/156 (62%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L ++++P+ ++ I L+ +M E MY G+GLAA Q+ V +++VID + Sbjct: 9 YPDSRLHKIAKPVTTFDARIKTLVADMAETMYDAPGVGLAASQVDVHEQVIVIDTSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +INP++I S + +Y EGCLS+P V+R A + VR D + + + A+G Sbjct: 67 RTELRAYINPELIWVSPEMQIYDEGCLSVPGVYDGVERHAKVKVRAYDADGKQFELEAEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LKR+ I KM K Sbjct: 127 LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKMLK 162 >gi|127513031|ref|YP_001094228.1| peptide deformylase [Shewanella loihica PV-4] gi|126638326|gb|ABO23969.1| peptide deformylase [Shewanella loihica PV-4] Length = 163 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 103/160 (64%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R ++P+E I + + ID+++E MY TD GIGLAA Q+G + ++VIDL Sbjct: 6 ILTIPDERLKRKAKPVEDIAA-VQGFIDDLIETMYHTDDGIGLAATQVGSEHAILVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R PMV INP+ + S + V +EGCLSIP YRA V R + V+ ++ + I Sbjct: 65 ED--RDQPMVVINPEFVERSGEI-VGEEGCLSIPGYRAKVTRFEKVKVKALNREGEAFEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 122 ESDDFLAIVLQHEMDHLDGKVFIEHLSPLKQQIALKKVKK 161 >gi|325105696|ref|YP_004275350.1| peptide deformylase [Pedobacter saltans DSM 12145] gi|324974544|gb|ADY53528.1| peptide deformylase [Pedobacter saltans DSM 12145] Length = 188 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/171 (42%), Positives = 99/171 (57%), Gaps = 5/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+L++V+ IEK ++ LI+NM E M + +G+GLAA QIG+ RL VI Sbjct: 1 MKLPIVAYGDPVLKKVAVDIEKDYPELPALIENMFETMDNANGVGLAAPQIGLSIRLFVI 60 Query: 62 DLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D A + +FINP I S + EGCLSIPD R DV R IT+ Y D Sbjct: 61 DATPFADEDASLASFKKIFINPIITDESGKEWKFNEGCLSIPDIREDVSRKEQITISYFD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N H +GL A +QHE DH+ G LF D +S LK+ M+ K+ +V+ Sbjct: 121 ENWIHHEDTFNGLAARVIQHEYDHIQGKLFTDRISPLKKAMLKGKLDAIVK 171 >gi|254431727|ref|ZP_05045430.1| peptide deformylase [Cyanobium sp. PCC 7001] gi|197626180|gb|EDY38739.1| peptide deformylase [Cyanobium sp. PCC 7001] Length = 183 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/141 (44%), Positives = 87/141 (61%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR +R I K++ + L +ML MY+ GIGLAA Q+GV +L+VIDL Sbjct: 20 DAVLRTPARRISKVDEAVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDLDPDNPAT 79 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 PMV INP+I +F Y+EGCLSIP +V R + V + D + Q + DGLL Sbjct: 80 PPMVLINPEIRSFGGSLDTYEEGCLSIPGVYLNVVRPTAVEVSFRDEMGRPQKLRTDGLL 139 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A C+QHE+DHLNG+LF+D ++ Sbjct: 140 ARCIQHEMDHLNGVLFVDRVT 160 >gi|90579699|ref|ZP_01235508.1| peptide deformylase [Vibrio angustum S14] gi|90439273|gb|EAS64455.1| peptide deformylase [Vibrio angustum S14] Length = 170 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 101/160 (63%), Gaps = 5/160 (3%) Query: 10 PDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67 P+P LR + + + ++ I LID+ML MY T +GIGLAA Q+G ++VIDL + Sbjct: 10 PNPKLRVQAEDVVDVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESIIVIDLSEE- 68 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R P VF+NPKI+ ++ V QEGCLS+PDY ADV+R I + +D + + D Sbjct: 69 -RNEPQVFVNPKIVR-GENPVVGQEGCLSVPDYYADVERFEKIELTALDRDGNDIHLERD 126 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LA LQHE+DHL GILFID+LS LKR M KK+ K ++ Sbjct: 127 DFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLK 166 >gi|300775194|ref|ZP_07085056.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] gi|300505934|gb|EFK37070.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] Length = 190 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/159 (45%), Positives = 97/159 (61%), Gaps = 13/159 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ F DP+LR+V + I+K + LIDNM E MYS +GIGLAA QIG+ RL VID+ Sbjct: 4 PIRAFGDPVLRKVGKDIDKDYPGLQELIDNMFETMYSANGIGLAAPQIGLDIRLFVIDVT 63 Query: 64 -----QDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +D+ K+ + VFIN +I+ S + + EGCLSIPD R DVKR I + Sbjct: 64 PLAEDEDYEDIKDELAEFKKVFINAQILEESGEEWKFNEGCLSIPDVREDVKRKGTIVIE 123 Query: 114 YMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y D N +H ++D + A +QHE DH+ GILF DHLS Sbjct: 124 YYDENFVKHTETFSD-IRARVIQHEYDHIEGILFTDHLS 161 >gi|33239533|ref|NP_874475.1| peptide deformylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39930846|sp|Q7VED2|DEF_PROMA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33237058|gb|AAP99127.1| N-formylmethionyl-tRNA deformylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 203 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 64/135 (47%), Positives = 87/135 (64%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR+ ++ I K++ +I +L+ ML MY+ GIGLAA QIG +L+VIDL P+ Sbjct: 41 LRQSAKRISKVDKNIRDLVKKMLHSMYAAKGIGLAAPQIGSQQQLLVIDLDIENSATPPI 100 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 + INP+I FS Y+EGCLSIP DV R + I V + D + + I ADGLLA C Sbjct: 101 ILINPEITEFSATIDTYEEGCLSIPGVYLDVIRPSSIKVNFRDEMGRPKKINADGLLARC 160 Query: 134 LQHELDHLNGILFID 148 +QHE+DHLNG+LF+D Sbjct: 161 IQHEMDHLNGVLFVD 175 >gi|313894829|ref|ZP_07828389.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976510|gb|EFR41965.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] Length = 156 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 64/138 (46%), Positives = 92/138 (66%), Gaps = 4/138 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+L++V+ PI+++ L+D+M E MYS +G+GLAA QIG R+VVID++D Sbjct: 11 DPVLKQVAEPIDRLTKRHRQLLDDMAETMYSANGVGLAAPQIGKSIRMVVIDVEDE---H 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP +IT + V EGCLS+P DV+R+A +TV Y D ++ + + A+GLL Sbjct: 68 GLLELINP-VITMREGTVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSRRRSLTAEGLL 126 Query: 131 ATCLQHELDHLNGILFID 148 A C+QHE DHL+G LFID Sbjct: 127 ARCIQHECDHLDGRLFID 144 >gi|257457589|ref|ZP_05622756.1| peptide deformylase [Treponema vincentii ATCC 35580] gi|257444975|gb|EEV20051.1| peptide deformylase [Treponema vincentii ATCC 35580] Length = 173 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 4/154 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 + LR+ S+P+E I+ + LI M M +GIGLAA QIG RL ++ + D R Sbjct: 8 EETLRQPSKPVEHIDEALHELIREMFITMDEDNGIGLAAPQIGKNVRLFIVKIDDGIER- 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 VFINP I+ S+ Y+EGCLSIP ADV R +TV+Y D N + + I A GLL Sbjct: 67 ---VFINPLIVGTSEKQCSYEEGCLSIPKMFADVVRPEAVTVQYQDMNGRRRTIEATGLL 123 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A +QHE DHL G+LFID LS +RD + K ++ Sbjct: 124 ARVIQHEYDHLEGVLFIDRLSEKERDSLVAKFTQ 157 >gi|110637113|ref|YP_677320.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406] gi|123163813|sp|Q11X86|DEF_CYTH3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|110279794|gb|ABG57980.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406] Length = 184 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 102/166 (61%), Gaps = 3/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DP+L++V++ IEK + D++ + +M E M + G+GLAA Q+ + R+ VID Sbjct: 4 PIVAYGDPVLKKVAQDIEKGSLDVVKMSADMFETMENAHGVGLAAPQVALNLRMFVIDTS 63 Query: 65 DHAHRK-NPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 K P+ FINP I D Y+EGCLSIP RADV R A + +RY D + + Sbjct: 64 VFDDEKITPVRKTFINPVIEEEWGDEWPYEEGCLSIPGVRADVYRPANLRIRYFDTDWKE 123 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + DG+ A +QHE DH+ G+LF+DHLS +K+ ++ K++ + + Sbjct: 124 HVEEFDGMTARVIQHEYDHIEGVLFVDHLSSIKKRLLKGKLTNISK 169 >gi|329924705|ref|ZP_08279720.1| peptide deformylase [Paenibacillus sp. HGF5] gi|328940539|gb|EGG36861.1| peptide deformylase [Paenibacillus sp. HGF5] Length = 172 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 64/151 (42%), Positives = 100/151 (66%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG GLAA QIG+L RL+ Sbjct: 1 MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + + INP+I+ D + E CLS P Y VKR+ +TV+ ++ Sbjct: 61 VMDCGEGL-----IELINPEIVEM-DGEQMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I+ + LA C+QHE+DHLNGILF+DH+ Sbjct: 115 ETVILKGEDYLARCMQHEIDHLNGILFVDHV 145 >gi|317967982|ref|ZP_07969372.1| peptide deformylase [Synechococcus sp. CB0205] Length = 200 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/141 (44%), Positives = 89/141 (63%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR +R I K++ + L +ML MY+ GIGLAA QIGV +L+VIDL+ Sbjct: 37 DEVLREPARRIGKVDDAVRKLATDMLVSMYAAKGIGLAAPQIGVNQQLLVIDLELEDPSS 96 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I + Y+EGCLSIP DV R + + V Y D + + + ADGL+ Sbjct: 97 PPLVLINPEITSVGGGLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDAFGRPKRMKADGLM 156 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A C+QHE+DHLNG+LF+D ++ Sbjct: 157 ARCIQHEMDHLNGVLFVDRVT 177 >gi|282900896|ref|ZP_06308832.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii CS-505] gi|281194234|gb|EFA69195.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii CS-505] Length = 190 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/155 (43%), Positives = 99/155 (63%), Gaps = 4/155 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I KI+ ++ LI +ML+ MYS DGIGLAA Q+GV +LVVID Sbjct: 24 DRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKPEM 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP I S + V QEGCLSIP +VKR + + Y D + Q + AD LL Sbjct: 84 PPLILINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADNLL 143 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDM-ITKKMSK 164 A C+ HE+DHLNG++F+D R++ + +T+++SK Sbjct: 144 ARCILHEMDHLNGVVFVD---RVENSLSLTEELSK 175 >gi|17544789|ref|NP_518191.1| peptide deformylase [Ralstonia solanacearum GMI1000] gi|23396562|sp|Q8Y3B0|DEF1_RALSO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|17427078|emb|CAD13598.1| probable peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum GMI1000] Length = 169 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 2/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ ID+ + Sbjct: 9 YPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDVSES-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R VFINP+I+ S+ V+ EGCLS+PD V+R + VR ++ + + DG Sbjct: 67 RDELRVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELETDG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS LK++ I K+ K Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 162 >gi|260434658|ref|ZP_05788628.1| peptide deformylase [Synechococcus sp. WH 8109] gi|260412532|gb|EEX05828.1| peptide deformylase [Synechococcus sp. WH 8109] Length = 201 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/141 (43%), Positives = 88/141 (62%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ +R I K+N + L +ML MY+ GIGLAA Q+G+ +L+VIDL Sbjct: 38 DEVLRQSARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAAT 97 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I S Y+EGCLSIP DV R I + + D + + + ADGL+ Sbjct: 98 PPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLM 157 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A C+QHE+DHLNG+LF+D ++ Sbjct: 158 ARCIQHEMDHLNGVLFVDRVT 178 >gi|72383267|ref|YP_292622.1| peptide deformylase [Prochlorococcus marinus str. NATL2A] gi|123773734|sp|Q46HV9|DEF_PROMT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|72003117|gb|AAZ58919.1| peptide deformylase [Prochlorococcus marinus str. NATL2A] Length = 202 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/149 (44%), Positives = 94/149 (63%), Gaps = 2/149 (1%) Query: 5 PLVIFP--DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL ++ D LR + I K++ I L +ML MYS+ GIGLAA Q+G+ RL+VID Sbjct: 30 PLKVYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVID 89 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 L+ PMVFINP+II+ S Y+EGCLSIP +V R + I + Y D + + Sbjct: 90 LKFEDPNSPPMVFINPEIISSSATLDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPK 149 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + ADGL+A C+QHE+DHLNG+ F+D ++ Sbjct: 150 KMNADGLMARCIQHEIDHLNGVCFVDKVT 178 >gi|148245003|ref|YP_001219697.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA] gi|146326830|dbj|BAF61973.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA] Length = 180 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 110/178 (61%), Gaps = 15/178 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PD LR ++ + +N I LI NM E MY+ +GIGLAA Q+ ++VVID+ Sbjct: 4 PILSYPDKRLRIKAKNVNIVNKTIQTLIKNMFETMYARNGIGLAATQVNQHLQIVVIDVP 63 Query: 65 DH----AHRKN----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + +RKN P+ FINP+I + EGCLS+ D++A+++R+ I Sbjct: 64 NSQFLFKNRKNNSQKLLQKQHPLCFINPEIKEKYGQ-EKHTEGCLSVSDFQAEIQRANHI 122 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 V+ ++ + I+ A GLLA C+QHE+DHL GILF+D+LS+LK+ + +++ K+ ++ Sbjct: 123 KVKALNEKGEIFILQATGLLAICIQHEIDHLKGILFVDYLSKLKQKRLLERIKKMTKV 180 >gi|78224736|ref|YP_386483.1| formylmethionine deformylase [Geobacter metallireducens GS-15] gi|78195991|gb|ABB33758.1| Formylmethionine deformylase [Geobacter metallireducens GS-15] Length = 168 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 103/166 (62%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M +P++ +P P+L++VS + I+ +I LID++L+ M + G +G+AA QIG R+ Sbjct: 1 MPAQPILCYPHPVLKKVSHAVAVIDDEIRGLIDDLLDTMRAGPGSVGVAAPQIGATLRVC 60 Query: 60 VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ H K +V +NP+I+ + ++ +EGC+S+PDY DV+R+ ITVR+ Sbjct: 61 VVDVSGSRHGKENNHGVLVMVNPEIV-HREGAAIMREGCMSVPDYTGDVERATTITVRFR 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 D + I A G A +QHE+DHL+GILF+D + LK + +K Sbjct: 120 DGEGTEREISASGFEAVAIQHEMDHLDGILFLDRIVSLKTGLFRRK 165 >gi|110597712|ref|ZP_01385996.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031] gi|110340619|gb|EAT59099.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031] Length = 186 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/165 (41%), Positives = 104/165 (63%), Gaps = 3/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ D ILR+ ++P++ I+S I LI +M E M + +GIGLAA Q+G RL+V+DL Sbjct: 4 PINIYSDDILRQKAKPLKGIDSTIEALIASMFESMRNAEGIGLAAPQVGHSVRLLVLDLS 63 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D+ + PMV INP I+ S +V +EGCLSIP DV+R A I+++Y D + + Sbjct: 64 CIDNYANEKPMVVINPHILAVSG-CNVMEEGCLSIPGVNGDVERPAVISLKYRDEHFLER 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+LA LQHE+DHL+G LF+D + + R I K+++ + Sbjct: 123 TREFSGMLARALQHEIDHLDGTLFVDRMEKRSRKKIQKELTDIAS 167 >gi|261416784|ref|YP_003250467.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373240|gb|ACX75985.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325617|gb|ADL24818.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 179 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/166 (42%), Positives = 95/166 (57%), Gaps = 3/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ DP+LR+ PI +I ++ L +MLE MY G GLAA QIG RLVVID Sbjct: 5 PIRIYGDPVLRKKCEPITEITPELRQLAKDMLETMYDAPGCGLAAPQIGKNIRLVVIDTA 64 Query: 65 -DHAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 P + NP+ D +V Y EGCLS+P+ +V R +TVR+ D N + Q Sbjct: 65 IPDEEEPRPYIMFNPEWEAEPDAKNVDYDEGCLSLPEIFCNVVRPDRVTVRFFDINGEAQ 124 Query: 123 IIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I+ +GL A C+QHE DHLNG LF+D +S R M K+ K+ + Sbjct: 125 EIHNCEGLFARCIQHECDHLNGDLFVDKISTSDRTMNQSKLRKMAK 170 >gi|282896056|ref|ZP_06304082.1| Polypeptide deformylase [Raphidiopsis brookii D9] gi|281198974|gb|EFA73849.1| Polypeptide deformylase [Raphidiopsis brookii D9] Length = 218 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 4/155 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I KI+ ++ LI +ML+ MYS DGIGLAA Q+GV +LVVID Sbjct: 52 DRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKPEI 111 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP I S + V QEGCLSIP +VKR + + Y D + Q + AD LL Sbjct: 112 PPLVLINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADNLL 171 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDM-ITKKMSK 164 A C+ HE+DHLNG++F+D R++ + +T+++SK Sbjct: 172 ARCILHEMDHLNGVVFVD---RVENSLSLTEELSK 203 >gi|333029959|ref|ZP_08458020.1| Peptide deformylase [Bacteroides coprosuis DSM 18011] gi|332740556|gb|EGJ71038.1| Peptide deformylase [Bacteroides coprosuis DSM 18011] Length = 186 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/168 (42%), Positives = 97/168 (57%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR V++ I ++ LI NM E M DGIGLAA QIG+ RLVV+DL Sbjct: 4 PIYVYGQPVLREVAKDITPEYPNLKELIQNMFETMEHADGIGLAAPQIGLSIRLVVMDLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D K VFINP I D EGCLS+P DV R + V Y D N Sbjct: 64 VLSEDFPELKGFRKVFINPYIEEVDGDDITMGEGCLSLPGIGEDVTRPDVVYVTYQDENF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G LA +QHE DHL+GI+FIDH+S L++ MI K++K+V+ Sbjct: 124 EKHTEKVEGYLARVMQHEFDHLDGIMFIDHISPLRKQMIRSKLNKMVK 171 >gi|295134935|ref|YP_003585611.1| peptide deformylase [Zunongwangia profunda SM-A87] gi|294982950|gb|ADF53415.1| peptide deformylase [Zunongwangia profunda SM-A87] Length = 196 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 12/173 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DP+L++ ++PI+K + LI NM + MY+ G+GLAA Q+GV RL VID Sbjct: 4 PIVAYGDPVLKKKAKPIDKDYPKLEELISNMWDTMYNAYGVGLAAPQVGVPIRLFVIDAA 63 Query: 65 DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + VFIN K+I + D + EGCLSIPD R D+ R +T+ Sbjct: 64 PFAEDDDLTAEEKEYLKGFKRVFINAKVIEETGDEWAFSEGCLSIPDVREDIFRKPEVTI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Y D N + + GL A +QHE DH GILF + +S LK+ +I ++ K+ Sbjct: 124 EYQDQNFETKKETFTGLAARVVQHEYDHTEGILFTEKISSLKKRLINGRLKKI 176 >gi|229522817|ref|ZP_04412231.1| peptide deformylase [Vibrio cholerae TM 11079-80] gi|229340034|gb|EEO05042.1| peptide deformylase [Vibrio cholerae TM 11079-80] Length = 168 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/165 (44%), Positives = 106/165 (64%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP LR S+ + + S + LID++L+ + +TD GIGLAA Q+G +VVIDL Sbjct: 6 ILTAPDPRLRLQSKQVTDVAS-VQTLIDDLLDTLCATDNGIGLAAPQVGREEAIVVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D+ R P+V INPK+++ S+ + QEGCLS+PDY ADV+R + V +D + I Sbjct: 65 DN--RDQPLVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|260887303|ref|ZP_05898566.1| peptide deformylase [Selenomonas sputigena ATCC 35185] gi|330838943|ref|YP_004413523.1| peptide deformylase [Selenomonas sputigena ATCC 35185] gi|260862939|gb|EEX77439.1| peptide deformylase [Selenomonas sputigena ATCC 35185] gi|329746707|gb|AEC00064.1| peptide deformylase [Selenomonas sputigena ATCC 35185] Length = 155 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 60/145 (41%), Positives = 93/145 (64%), Gaps = 6/145 (4%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 P+L+ + P+E++++ + L+D+M E MY +GIG+AA Q+G R+VVID+ D Sbjct: 12 PVLKEICAPVERVDARLRKLLDDMAETMYEANGIGIAAPQVGEALRMVVIDIGD-----G 66 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + +NPKI TF + EGCLS+P +V+R+A + V ++D + + I A GLLA Sbjct: 67 IIELVNPKI-TFREGSETDSEGCLSVPGIFGEVERAAKVKVEFLDRRGKRKHITAKGLLA 125 Query: 132 TCLQHELDHLNGILFIDHLSRLKRD 156 C+QHELDHL G+LFID L+++ Sbjct: 126 RCIQHELDHLEGVLFIDVAQSLRKE 150 >gi|78213784|ref|YP_382563.1| peptide deformylase [Synechococcus sp. CC9605] gi|123756848|sp|Q3AHC4|DEF_SYNSC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78198243|gb|ABB36008.1| Formylmethionine deformylase [Synechococcus sp. CC9605] Length = 201 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/141 (43%), Positives = 88/141 (62%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ +R I K+N + L +ML MY+ GIGLAA Q+G+ +L+VIDL Sbjct: 38 DEVLRQPARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAAT 97 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I S Y+EGCLSIP DV R I + + D + + + ADGL+ Sbjct: 98 PPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLM 157 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A C+QHE+DHLNG+LF+D ++ Sbjct: 158 ARCIQHEMDHLNGVLFVDRVT 178 >gi|113970479|ref|YP_734272.1| peptide deformylase [Shewanella sp. MR-4] gi|113885163|gb|ABI39215.1| peptide deformylase [Shewanella sp. MR-4] Length = 163 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 103/160 (64%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R ++P++ I + I ID+++E MY TD GIGLA+ Q+G ++VIDL Sbjct: 6 ILTIPDERLKRKAQPVKDIEA-IQGFIDDLIETMYHTDDGIGLASTQVGSTDAVIVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ R P+V INP+I+ S ++ V +EGCLSIP YRA V R + V +D + I Sbjct: 65 EN--RDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVSRFEKVKVTALDRQGKAIEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 122 ETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRK 161 >gi|114047714|ref|YP_738264.1| peptide deformylase [Shewanella sp. MR-7] gi|113889156|gb|ABI43207.1| peptide deformylase [Shewanella sp. MR-7] Length = 163 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 103/160 (64%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R ++P++ I + I ID+++E MY TD GIGLA+ Q+G ++VIDL Sbjct: 6 ILTIPDERLKRKAQPVKDIEA-IQGFIDDLIETMYHTDDGIGLASTQVGSTDAVIVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ R P+V INP+I+ S ++ V +EGCLSIP YRA V R + V +D + I Sbjct: 65 EN--RDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVSRFEKVKVTALDRQGKAIEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 122 ETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRK 161 >gi|306840629|ref|ZP_07473381.1| peptide deformylase [Brucella sp. BO2] gi|306289367|gb|EFM60603.1| peptide deformylase [Brucella sp. BO2] Length = 164 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 99/165 (60%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + D+ L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L P +INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELD---RTTGPKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRLKR+ + K+ KL Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLKRERLIKRYEKL 162 >gi|71281182|ref|YP_267165.1| peptide deformylase [Colwellia psychrerythraea 34H] gi|71146922|gb|AAZ27395.1| polypeptide deformylase [Colwellia psychrerythraea 34H] Length = 166 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/159 (45%), Positives = 101/159 (63%), Gaps = 5/159 (3%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAH 68 P+ L ++P+ + S I LID+++E MY T DGIGLAA Q+G +VVID+ D+ Sbjct: 10 PNDKLIEQAKPVSDV-SQIQMLIDDLIETMYDTEDGIGLAATQVGRSEAVVVIDISDN-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V +NP +IT + + QEGCLSIP Y ADV+R +TV +D N + I +D Sbjct: 67 RDELLVLVNP-VITHGEATAKGQEGCLSIPGYYADVERFTHVTVEALDRNGKELTITSDE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LA +QHE+DHL G LFID+LS LK+ M KK+ K ++ Sbjct: 126 FLAIVMQHEIDHLKGKLFIDYLSPLKQQMALKKVKKTIK 164 >gi|86133858|ref|ZP_01052440.1| polypeptide deformylase [Polaribacter sp. MED152] gi|85820721|gb|EAQ41868.1| polypeptide deformylase [Polaribacter sp. MED152] Length = 196 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/175 (39%), Positives = 96/175 (54%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DP+LR++ I+K ++ LI NM E MY+ G+GLAA QIG RL VID Sbjct: 4 PIVAYGDPVLRKMGVEIDKDYPNLKELIANMKETMYNASGVGLAAPQIGKAIRLFVIDAS 63 Query: 65 DHAHRKNPM------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + V+INPKII + + EGCLSIPD R DV R + +T+ Sbjct: 64 PFAEDDDLDDEERATLKDFNRVYINPKIIDEEGEEWTFNEGCLSIPDVREDVTRKSKVTL 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y D + DGL A QHE DH+ G+LF D +S LK+ +I +K+ + + Sbjct: 124 EYQDEDFNTHTEVLDGLAARVFQHEYDHIEGVLFTDKVSSLKKRLIKRKLENISK 178 >gi|123967617|ref|YP_001008475.1| peptide deformylase [Prochlorococcus marinus str. AS9601] gi|158513947|sp|A2BNK7|DEF_PROMS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123197727|gb|ABM69368.1| putative formylmethionine deformylase [Prochlorococcus marinus str. AS9601] Length = 201 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 65/154 (42%), Positives = 97/154 (62%), Gaps = 2/154 (1%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ S+ I K++ I L ML+ MY+ GIGLAA QIG+ L+VID+ Sbjct: 38 DDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAA 97 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+I F + Y+EGCLSIP +V R + I +++ D + + + ADGLL Sbjct: 98 EPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLL 157 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A C+QHE+DHLNGILF+D ++ +D + K++ K Sbjct: 158 ARCIQHEMDHLNGILFVDRVT--SKDDLNKELLK 189 >gi|320530181|ref|ZP_08031251.1| peptide deformylase [Selenomonas artemidis F0399] gi|320137614|gb|EFW29526.1| peptide deformylase [Selenomonas artemidis F0399] Length = 156 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/138 (44%), Positives = 93/138 (67%), Gaps = 4/138 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+L++V+ PI+++ L+D+M E MY+++G+GLAA QIG R+VVID++D Sbjct: 11 DPVLKQVAEPIDRLTKRHRQLLDDMAETMYASNGVGLAAPQIGKSIRMVVIDVEDE---H 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP +IT + V EGCLS+P DV+R+A +TV Y D ++ + + A+GLL Sbjct: 68 GLLELVNP-VITMREGSVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSRRRSLTAEGLL 126 Query: 131 ATCLQHELDHLNGILFID 148 A C+QHE DHL+G LFID Sbjct: 127 ARCIQHECDHLDGRLFID 144 >gi|126695417|ref|YP_001090303.1| peptide deformylase [Prochlorococcus marinus str. MIT 9301] gi|126542460|gb|ABO16702.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9301] Length = 201 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 65/154 (42%), Positives = 97/154 (62%), Gaps = 2/154 (1%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ S+ I K++ I L ML+ MY+ GIGLAA QIG+ L+VID+ Sbjct: 38 DDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAA 97 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+I F + Y+EGCLSIP +V R + I +++ D + + + ADGLL Sbjct: 98 EPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLL 157 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A C+QHE+DHLNGILF+D ++ +D + K++ K Sbjct: 158 ARCIQHEMDHLNGILFVDRVT--SKDDLNKELLK 189 >gi|308047745|ref|YP_003911311.1| peptide deformylase [Ferrimonas balearica DSM 9799] gi|307629935|gb|ADN74237.1| peptide deformylase [Ferrimonas balearica DSM 9799] Length = 171 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR V+ P+ + L+D+M + MY GIGLAA QI +++V Sbjct: 1 MAVREVLRFPDERLRTVAEPVTDFGPALQQLVDDMFDTMYEERGIGLAATQINEHVQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R P VFINPKII F+ +EGCLS+P A V+R+ + D Sbjct: 61 MDHSED--RSEPKVFINPKIIEEKGHFT-NEEGCLSVPGVYAKVERAEHVVFEAQDREGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LL+ C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 PFTVEADELLSICIQHEMDHLLGKLFVDYLSPLKRQRIKQKLEKQARL 165 >gi|255529965|ref|YP_003090337.1| peptide deformylase [Pedobacter heparinus DSM 2366] gi|255342949|gb|ACU02275.1| peptide deformylase [Pedobacter heparinus DSM 2366] Length = 186 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 2/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P++ + DP+L++V PIE+ D+ LI NM E MY+ G+GLAA Q+G+ RL ++ Sbjct: 1 MKLPIIAYGDPVLKKVCTPIEQTYPDLKQLISNMFETMYNAHGVGLAAPQVGLPIRLFIV 60 Query: 62 DLQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D KN VFIN +I+ + + + EGCLSIPD R DV R I ++Y D + Sbjct: 61 DTGADEGDKNKFKKVFINAEILEETGEPWAFNEGCLSIPDIREDVMRKPNIRIKYYDEHW 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + G+ A +QHE DH+ G LF D LS L++ M+ K+ Sbjct: 121 ELHEEEVSGMPARVIQHEYDHIEGKLFTDTLSLLRKTMLKSKL 163 >gi|241608057|ref|XP_002405931.1| polypeptide deformylase, putative [Ixodes scapularis] gi|215500709|gb|EEC10203.1| polypeptide deformylase, putative [Ixodes scapularis] Length = 164 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D +L+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKILQTLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ + + FINP+I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 N-NKSSTIAFINPEITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 A+G LAT +QHE+D+LNG F+D+LS+LKRD + KK Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKK 164 >gi|148240477|ref|YP_001225864.1| peptide deformylase [Synechococcus sp. WH 7803] gi|147849016|emb|CAK24567.1| Peptide deformylase [Synechococcus sp. WH 7803] Length = 201 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 7/156 (4%) Query: 3 KKPLVIFP-------DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 K+PL P D +LR +R I K++ + +L +ML MY+ GIGLAA Q+GV Sbjct: 23 KEPLDTAPLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVH 82 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +L+VIDL P+V INP+I + S Y+EGCLSIP DV R + + V + Sbjct: 83 QQLLVIDLDPETASSPPLVLINPEITSASASLETYEEGCLSIPGVYLDVVRPSAVQVSFR 142 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + + + ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 143 DEMGRPRTMKADGLMARCIQHEMDHLTGVLFVDRVT 178 >gi|52426256|ref|YP_089393.1| peptide deformylase [Mannheimia succiniciproducens MBEL55E] gi|81691285|sp|Q65QF2|DEF_MANSM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|52308308|gb|AAU38808.1| Def protein [Mannheimia succiniciproducens MBEL55E] Length = 171 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 102/160 (63%), Gaps = 3/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++I+PD L+ ++ P+ + N ++ ID+M E MY +GIGLAA Q+ V R++ ID+ Sbjct: 6 VLIYPDERLKTIAEPVTEFNDELQTFIDDMFETMYQEEGIGLAATQVDVHKRVITIDIT- 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +V INP+++ + + + CLS+P R V R +TV+ ++ + ++ Sbjct: 65 -GEKTEQLVLINPELLDGEGETGIEEG-CLSLPGLRGFVPRKEKVTVKALNRQGEEFTLH 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ KL Sbjct: 123 ADGLLAICIQHEIDHLNGIVFADYLSPLKRNRMKEKLVKL 162 >gi|295696040|ref|YP_003589278.1| peptide deformylase [Bacillus tusciae DSM 2912] gi|295411642|gb|ADG06134.1| peptide deformylase [Bacillus tusciae DSM 2912] Length = 155 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 93/141 (65%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR ++P+ K+ +I LID+M + MY+ DGIGLAA Q+G+L R++V D+ + Sbjct: 11 DPILREKAKPVSKVTPNIQRLIDDMADTMYNADGIGLAAPQVGILKRVIVADIGEGL--- 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP+++ + EGCLSIP +ADV R+ + VR D N + ++ A+GLL Sbjct: 68 --LGLVNPEVV-LEEGEQTGPEGCLSIPGIQADVTRAHHVIVRAQDRNGEPLVVDAEGLL 124 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A CL HE+DHL+GILF+D ++ Sbjct: 125 ARCLLHEIDHLDGILFLDRVT 145 >gi|303233239|ref|ZP_07319911.1| peptide deformylase [Atopobium vaginae PB189-T1-4] gi|302480629|gb|EFL43717.1| peptide deformylase [Atopobium vaginae PB189-T1-4] Length = 183 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/154 (44%), Positives = 89/154 (57%), Gaps = 2/154 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K +V FP PIL+ V P++ I SDI L +ML+VMY+TDG GLAA QIG RLVVID+ Sbjct: 8 KEMVCFPSPILQTVCTPVKHITSDIKELAHHMLDVMYATDGCGLAAPQIGETIRLVVIDV 67 Query: 64 -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 KNP V +NP I+T + EGCLS P V R + + + + + Sbjct: 68 DWSSTSAKNPYVLVNPTIVTADGKDRLMPEGCLSYPGIMVGVTRPSHVICEAYNLDGECM 127 Query: 123 IIYADG-LLATCLQHELDHLNGILFIDHLSRLKR 155 A G L+A CLQHE DH+NGI DHL L++ Sbjct: 128 RYEATGNLMAACLQHECDHINGITIPDHLPPLEK 161 >gi|313673898|ref|YP_004052009.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] gi|312940654|gb|ADR19846.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] Length = 167 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 5/157 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP LR +P++K + ++ ++++M E MY+ G+GLAA Q+G+ RL +ID+ + Sbjct: 8 YPDPRLRVKCKPVDKFDEELKKIVNDMAETMYNAPGVGLAAPQVGIDKRLFIIDI---SK 64 Query: 69 RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KN + VFINP I+ + +EGCLS+P A+V R+ + D N II AD Sbjct: 65 EKNDLKVFINPTILKKEGEI-CDEEGCLSVPGEYANVTRAEVVEAVAQDINGNEFIIKAD 123 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 GL+A +QHELDHLNG LF+D L KR+ + K + + Sbjct: 124 GLMARAIQHELDHLNGTLFLDRLPAFKRESVKKHIKR 160 >gi|227484652|ref|ZP_03914968.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172] gi|227237372|gb|EEI87387.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172] Length = 161 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 65/138 (47%), Positives = 91/138 (65%), Gaps = 3/138 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR++SRP+E + I L+D+M E MY+ DG+GLAA Q+G L R++V+D +D Sbjct: 11 DPILRKISRPVEDVTDRIRILLDDMAETMYAADGVGLAAPQVGNLRRVIVVDPRD--GED 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + + +NP+I+ D + EGCLSIPD+ A VKR + V+Y+D N + +I A G Sbjct: 69 SLVKLVNPEILEM-DGEQIGVEGCLSIPDFNATVKRPEHVKVKYLDENGEEKIWDAHGFP 127 Query: 131 ATCLQHELDHLNGILFID 148 A L HE+DHLNGILF D Sbjct: 128 AVILCHEIDHLNGILFKD 145 >gi|304316976|ref|YP_003852121.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778478|gb|ADL69037.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 159 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 66/143 (46%), Positives = 93/143 (65%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPIL + ++ +EKI+ I+ ++D+M E MYS DG+GLAA QIG+L RLVV+D+ D Sbjct: 11 DPILYKKAKHVEKIDDHILMILDDMAETMYSADGVGLAANQIGILRRLVVVDVGD----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+II + + QEGCLS+P+ A+VKR I V+Y D N + I + L Sbjct: 66 GLIELINPEII-LEEGEQIGQEGCLSVPNVTAEVKRPKKIKVKYQDRNGDIREIEGEDFL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A L HE+DHLNG+LF+D R+ Sbjct: 125 ARALSHEIDHLNGVLFVDKAIRI 147 >gi|194334376|ref|YP_002016236.1| peptide deformylase [Prosthecochloris aestuarii DSM 271] gi|238693348|sp|B4S9B9|DEF_PROA2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194312194|gb|ACF46589.1| peptide deformylase [Prosthecochloris aestuarii DSM 271] Length = 186 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 66/164 (40%), Positives = 101/164 (61%), Gaps = 3/164 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ D +LRR ++P++ I++ LI NM+E M + GIGLAA QIG+ RL+++DL Sbjct: 4 PITIYSDEVLRRKAKPLKGIDTSHEELIGNMIESMRNASGIGLAAPQIGLSMRLLIVDLS 63 Query: 65 DHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +N PMV INP I+ ++ +EGCLSIPD ADV R + I ++Y + + + + Sbjct: 64 PVQGYENAEPMVVINPHILAVKG-YNAMEEGCLSIPDIHADVVRPSSIQLKYRNEHFEER 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + L+A LQHE+DHL+G LF+D L R R + K + + Sbjct: 123 VDEFSALMARVLQHEIDHLDGTLFVDKLQRRDRRKVQKSLEDIA 166 >gi|124024845|ref|YP_001013961.1| peptide deformylase [Prochlorococcus marinus str. NATL1A] gi|158512738|sp|A2BZN6|DEF_PROM1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123959913|gb|ABM74696.1| putative formylmethionine deformylase [Prochlorococcus marinus str. NATL1A] Length = 202 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 67/149 (44%), Positives = 93/149 (62%), Gaps = 2/149 (1%) Query: 5 PLVIFP--DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL ++ D LR + I K++ I L +ML MYS+ GIGLAA Q+G+ RL+VID Sbjct: 30 PLKVYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVID 89 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 L PMVFINP+II+ S Y+EGCLSIP +V R + I + Y D + + Sbjct: 90 LNFEDPNSPPMVFINPEIISSSATVDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPK 149 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + ADGL+A C+QHE+DHLNG+ F+D ++ Sbjct: 150 KMNADGLMARCIQHEIDHLNGVCFVDKVT 178 >gi|117920762|ref|YP_869954.1| peptide deformylase [Shewanella sp. ANA-3] gi|117613094|gb|ABK48548.1| peptide deformylase [Shewanella sp. ANA-3] Length = 163 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 102/160 (63%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R ++P++ I + I ID+++E MY TD GIGLA+ Q+G ++VIDL Sbjct: 6 ILTIPDERLKRKAQPVKDIEA-IQGFIDDLIETMYHTDDGIGLASTQVGSTDAVIVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P+V INP+I+ S ++ V +EGCLSIP YRA V R + V +D + I Sbjct: 65 ET--RDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVTRFEKVKVTALDRQGKAIEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 122 ETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRK 161 >gi|32491245|ref|NP_871499.1| hypothetical protein WGLp496 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30172741|sp|Q8D258|DEF_WIGBR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|25166452|dbj|BAC24642.1| def [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 152 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 63/146 (43%), Positives = 96/146 (65%), Gaps = 3/146 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P+ LR+++ I I+S+I +LI NMLE MY +GIGLAA Q+ V R++VID+ + + Sbjct: 9 YPNKKLRKIASNISLIDSEIKSLIKNMLETMYFNEGIGLAATQVDVHKRIIVIDISKNKN 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P++ INP I ++EGCLSIP A V RS + ++ ++C + ++ + G Sbjct: 69 K--PLILINPVFINKCGA-QTFEEGCLSIPKKTAFVNRSKKVKIKAINCLGEEFLLKSKG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLK 154 LLATC+QHE+DHL G LFID++ LK Sbjct: 126 LLATCIQHEMDHLIGKLFIDYIKPLK 151 >gi|87125300|ref|ZP_01081146.1| putative formylmethionine deformylase [Synechococcus sp. RS9917] gi|86167069|gb|EAQ68330.1| putative formylmethionine deformylase [Synechococcus sp. RS9917] Length = 201 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 7/158 (4%) Query: 1 MVKKPLVIFP-------DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG 53 + K+PL + P D +LR+ ++ I K+++ + +L +ML MY+ GIGLAA Q+G Sbjct: 21 VTKEPLDVPPLEIHTLGDRVLRQPAKRISKVDAAVRDLARDMLRSMYTARGIGLAAPQVG 80 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V +L+VIDL P+V INP+I + S Y+EGCLSIP DV R + I + Sbjct: 81 VHKQLLVIDLDIENAAAPPLVLINPEITSASASVDTYEEGCLSIPGVYLDVVRPSAIQLS 140 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y D + + + ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 141 YRDEMGRPRTMKADGLMARCIQHEMDHLKGVLFVDRVT 178 >gi|78778455|ref|YP_396567.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312] gi|123727935|sp|Q31DB4|DEF_PROM9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78711954|gb|ABB49131.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312] Length = 201 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 96/151 (63%), Gaps = 3/151 (1%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ S+ I K++ I L M++ MY+ GIGLAA QIG+ L+VID+ Sbjct: 38 DDVLRQNSKRITKVDESIRKLTREMIQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAA 97 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+I + + Y+EGCLSIP +V R + I +++ D + + + ADGLL Sbjct: 98 EPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLL 157 Query: 131 ATCLQHELDHLNGILFIDHLSR---LKRDMI 158 A C+QHE+DHLNGILF+D ++ LK+++I Sbjct: 158 ARCIQHEMDHLNGILFVDRVTSKDDLKKELI 188 >gi|242309635|ref|ZP_04808790.1| peptide deformylase [Helicobacter pullorum MIT 98-5489] gi|239523636|gb|EEQ63502.1| peptide deformylase [Helicobacter pullorum MIT 98-5489] Length = 169 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 106/162 (65%), Gaps = 4/162 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---D 62 ++ +P+P+LR++S+PIE + + L+D M E M + +G+G++A+Q+ R ++I D Sbjct: 5 VITYPNPLLRQISKPIENFDESLHQLLDAMYETMLNKNGVGISAIQVAKPIRALLICLPD 64 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + + H++N + INP+II + + ++ EGCLS+P++ +VKR + + + Y + ++ Sbjct: 65 EEGNQHKENLLEIINPEIIEKNGEI-LFNEGCLSVPEFYEEVKRYSSLKIHYQNRYGENL 123 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A+ LA LQHE+DHLNGILFID LS +KR K++ + Sbjct: 124 QLEANDYLAVALQHEIDHLNGILFIDKLSIIKRKKFEKELKQ 165 >gi|91225452|ref|ZP_01260574.1| peptide deformylase [Vibrio alginolyticus 12G01] gi|91189815|gb|EAS76088.1| peptide deformylase [Vibrio alginolyticus 12G01] Length = 168 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 105/160 (65%), Gaps = 5/160 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67 PDP L+ + + + S I LID+MLE +Y+T +GIGLA+ Q+G +VVID+ D Sbjct: 9 IPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVVVIDISDE- 66 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R +P++ +NP++++ ++ ++ QEGCLS+P+Y ADV+R + V +D + I + Sbjct: 67 -RNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDGNPITIESG 124 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ Sbjct: 125 EFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVK 164 >gi|24374073|ref|NP_718116.1| peptide deformylase [Shewanella oneidensis MR-1] gi|32363156|sp|Q8EE60|DEF3_SHEON RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName: Full=Polypeptide deformylase 3 gi|24348554|gb|AAN55560.1|AE015695_2 polypeptide deformylase [Shewanella oneidensis MR-1] Length = 163 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 102/160 (63%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD L+R ++P++ I + I ID+++E MY TD GIGLA+ Q+G ++VIDL Sbjct: 6 ILTIPDERLKRKAQPVKDIEA-IQGFIDDLIETMYHTDDGIGLASTQVGSTDAVIVIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P+V +NP+I+ S ++ V +EGCLSIP YRA V R + V +D + I Sbjct: 65 ET--RDQPLVLVNPEIVEKSGEY-VGEEGCLSIPGYRAKVTRFEKVKVTALDRQGKAIEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 122 ETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRK 161 >gi|325972108|ref|YP_004248299.1| peptide deformylase [Spirochaeta sp. Buddy] gi|324027346|gb|ADY14105.1| Peptide deformylase [Spirochaeta sp. Buddy] Length = 167 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 94/158 (59%), Gaps = 4/158 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L +P+ K +S + L+D M E M DG+GLAA Q+GV RL VI +Q +R Sbjct: 9 DEVLTEKCQPVTKFDSALRILVDAMFETMAEADGVGLAAPQVGVNSRLFVIHIQGSENR- 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +INP+II S + +EGCLSIP DV+R A +TV+ D + + A+GLL Sbjct: 68 ---AYINPQIIETSIETDTSEEGCLSIPGVWHDVQRPARVTVQAQDVEGKVFTVKAEGLL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A +QHE DHLNG+LFID L+ +R+ + K K +L Sbjct: 125 ARAIQHEYDHLNGVLFIDRLNDEEREKMVKAYEKRAKL 162 >gi|255657698|ref|ZP_05403107.1| peptide deformylase [Mitsuokella multacida DSM 20544] gi|260849886|gb|EEX69893.1| peptide deformylase [Mitsuokella multacida DSM 20544] Length = 155 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 4/144 (2%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 P+L+ V P+EKI+ D+ L+D+M MY +DG+GLAA Q+G R+VVID QD Sbjct: 12 PVLKEVCAPVEKIDKDLRKLLDDMAVTMYESDGVGLAAPQVGRPIRVVVIDCQDD---HG 68 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + INP +ITF + + EGCLS+P +V+R+A + V +++ + Q + A GLLA Sbjct: 69 LIELINP-VITFREGTATDTEGCLSVPGIYGEVERAAKVKVEFLNRRGKKQHLTATGLLA 127 Query: 132 TCLQHELDHLNGILFIDHLSRLKR 155 C+QHELDHL G LFID L R Sbjct: 128 RCIQHELDHLEGQLFIDIAKSLHR 151 >gi|86604850|ref|YP_473613.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] gi|86553392|gb|ABC98350.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] Length = 198 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 60/141 (42%), Positives = 89/141 (63%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ + ++N +I L +ML+ MYS DGIGLAA Q+G+ RL+V+DL Sbjct: 24 DKVLRQPAKRVSQVNDEIRQLARHMLQTMYSADGIGLAAPQVGIPKRLIVVDLYPDKPEV 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I + + QEGCLSIP +V R + V + D + + + AD LL Sbjct: 84 PPLVLINPEIREYLGEVVAGQEGCLSIPGVFCEVMRPQGVVVSFKDETGRPRTLQADDLL 143 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A +QHE+DHLNG+LF+DH+ Sbjct: 144 ARVIQHEIDHLNGVLFVDHVE 164 >gi|94264678|ref|ZP_01288460.1| Peptide deformylase [delta proteobacterium MLMS-1] gi|93454909|gb|EAT05153.1| Peptide deformylase [delta proteobacterium MLMS-1] Length = 263 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 106/184 (57%), Gaps = 19/184 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP+ L+ +RP+ + + + L+ +M+ M+ G+GLAA Q+GV ++VV Sbjct: 72 MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131 Query: 61 I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 I D +D A +NP +V INP+++ + V +EGCLS+ DY + Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 VKR A + V +D + Q I A+G A LQHE+DHL G LFID LS LKR + KK+ Sbjct: 191 KVKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250 Query: 163 SKLV 166 K++ Sbjct: 251 KKII 254 >gi|126640269|ref|YP_001083253.1| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii ATCC 17978] Length = 142 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M E MY+ GIGLAA Q+ +L+V+DL + + PMVFINPK+ +++ Y+EGC Sbjct: 1 MFETMYAAPGIGLAASQVDRHIQLIVMDLSES--KDEPMVFINPKVTPLTEETQPYEEGC 58 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 LS+P V R + + + ++ Q I ADGLLA C+QHE+DHLNG LF+D+LS LK Sbjct: 59 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 118 Query: 155 RDMITKKMSKLVQLRD 170 R +K+ K+V+ R+ Sbjct: 119 RQRAREKVEKIVRQRE 134 >gi|148241454|ref|YP_001226611.1| peptide deformylase [Synechococcus sp. RCC307] gi|166198524|sp|A5GQU9|DEF_SYNR3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|147849764|emb|CAK27258.1| Peptide deformylase [Synechococcus sp. RCC307] Length = 201 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 62/138 (44%), Positives = 86/138 (62%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR+ ++ I K+N + L ML MY+ GIGLAA Q+GV +L+VIDL P+ Sbjct: 41 LRKPAKRISKVNEQVRELAREMLRSMYAAHGIGLAAPQVGVHQQLLVIDLDPEEAANPPL 100 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V INP+I+ S Y+EGCLSIP +V R + + V+Y D + Q ADGL+A C Sbjct: 101 VLINPEIVATSGALDTYEEGCLSIPGVYLNVVRPSQVDVKYRDELGRPQRRKADGLMARC 160 Query: 134 LQHELDHLNGILFIDHLS 151 + HE+DHLNG+LF+D +S Sbjct: 161 ILHEMDHLNGVLFVDRVS 178 >gi|148270260|ref|YP_001244720.1| peptide deformylase [Thermotoga petrophila RKU-1] gi|166198525|sp|A5ILS1|DEF_THEP1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|147735804|gb|ABQ47144.1| peptide deformylase [Thermotoga petrophila RKU-1] Length = 164 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 94/155 (60%), Gaps = 5/155 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D+ + Sbjct: 6 VFGDPVLRKRAKPVTKFDDNLEKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-- 63 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P+ INP+I+ + V +EGCLS P+ +++RS I VRY + ++ + Sbjct: 64 ---GPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVRYQNTKGEYVEEVLE 120 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 G A QHE DHLNG+L ID +S KR ++ KK+ Sbjct: 121 GYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKL 155 >gi|149278151|ref|ZP_01884289.1| peptide deformylase [Pedobacter sp. BAL39] gi|149230917|gb|EDM36298.1| peptide deformylase [Pedobacter sp. BAL39] Length = 184 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 1/162 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+L++V PIE+ ++ LI NM E MY+ G+GLAA QIG+ RL VI Sbjct: 1 MKLPIVAYGDPVLKKVCAPIEQDYPELKQLISNMFETMYNAHGVGLAAPQIGLPIRLFVI 60 Query: 62 DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D V+IN +I+ + + + EGCLSIPD R DV R I +RY D N + Sbjct: 61 DTGGDEDEDGVKRVYINAEILEENGEPWAFNEGCLSIPDIREDVMRKPNIRIRYYDENWE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 G+LA +QHE DH+ G LF + LS L++ M+ K+ Sbjct: 121 LHEKEVTGMLARVIQHEYDHIQGKLFTETLSLLRKRMLQSKL 162 >gi|326798583|ref|YP_004316402.1| peptide deformylase [Sphingobacterium sp. 21] gi|326549347|gb|ADZ77732.1| Peptide deformylase [Sphingobacterium sp. 21] Length = 190 Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 71/173 (41%), Positives = 100/173 (57%), Gaps = 8/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+L+R + I+K ++ NLI NM E MY+ G+G+AA Q+G+ RL V+ Sbjct: 1 MKLPIVAYGDPVLKRKAIDIDKDYPELENLIANMFETMYAAHGVGIAAPQVGLSIRLFVV 60 Query: 62 DLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D A P VFIN I + + EGCLSIPD R DV R + I +RY Sbjct: 61 DASPFAEDDAPELKDFKKVFINAHIEEEEGEKWEFNEGCLSIPDIREDVSRHSIIHIRYF 120 Query: 116 DCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D N +H+ Y DGL A +QHE DH+ G LF D LS L++ M+ K+ + + Sbjct: 121 DENWVEHREKY-DGLAARVIQHEYDHIEGKLFTDRLSVLRKAMLKSKLDAISK 172 >gi|117621144|ref|YP_856896.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562551|gb|ABK39499.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 166 Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP L + +E I + + LID+MLE +Y+TD GIGLAA Q+G +V+IDL Sbjct: 6 ILTVPDPRLGIKAEQVEDIAA-VQGLIDDMLETLYATDNGIGLAATQVGRKEAIVIIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P+V INP++ T + ++ QEGCLS+PDY ADV+R + V +D + + Sbjct: 65 EK--RDQPLVLINPQV-TSGTEPALGQEGCLSVPDYYADVERYGSVVVSALDRHGVPITV 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + LA +QHE+DHL G +FID+LS LKR M KK+ K Sbjct: 122 KSSDFLAIVMQHEIDHLQGKVFIDYLSPLKRKMALKKVKK 161 >gi|116621863|ref|YP_824019.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076] gi|116225025|gb|ABJ83734.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076] Length = 171 Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 101/167 (60%), Gaps = 2/167 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+V F DP+L R + + + ++ ++ +D+M E MY+ G+GLAA QIGV ++ VID+ Sbjct: 4 PIVKFGDPVLEREADTVTEFDTPELHKFLDDMFESMYAAKGVGLAAPQIGVSKKIAVIDV 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + + +V INPKI+ D +EGCLSIP +R V+R+ +T+R + + Sbjct: 64 SNGENADDKLVIINPKILKI-DGKQEGEEGCLSIPGFREQVRRARCVTIRAQNAKGEEFE 122 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LLA HE DHL G L+I H+S LKRD++ +K+ KL + D Sbjct: 123 KTGEDLLARAFLHETDHLYGRLYITHISALKRDLMKRKIKKLQRAGD 169 >gi|254409726|ref|ZP_05023507.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] gi|196183723|gb|EDX78706.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] Length = 190 Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 60/141 (42%), Positives = 86/141 (60%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ + K++ I L ML+ MYS DGIGLAA Q+GV +++VID + Sbjct: 26 DRVLRQPAKRVAKVDQSIRQLAHQMLQTMYSADGIGLAAPQVGVNKQIIVIDCEPDNPEN 85 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP I F QEGCLS+P DVKR + V Y D N + Q + ADGLL Sbjct: 86 PPLILINPTIKRFGQSICDAQEGCLSVPGVYLDVKRPVEVEVAYKDENGRPQRLKADGLL 145 Query: 131 ATCLQHELDHLNGILFIDHLS 151 + +QHE+DHL G++F+D + Sbjct: 146 SRAIQHEMDHLTGVMFVDRVE 166 >gi|51244598|ref|YP_064482.1| peptide deformylase [Desulfotalea psychrophila LSv54] gi|81692939|sp|Q6AQ98|DEF_DESPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|50875635|emb|CAG35475.1| probable peptide deformylase [Desulfotalea psychrophila LSv54] Length = 169 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 68/161 (42%), Positives = 95/161 (59%), Gaps = 2/161 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +PDP+LR+ + I + ++ L ++M E MY GIGLAA QIG +LVV+ Sbjct: 6 ICTYPDPVLRKETVAITVFDEKLVKLTEDMAETMYDAPGIGLAAPQIGESLKLVVVSTAR 65 Query: 66 HAHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 K MV NP+I+ ++ V +EGCLS+P+ A VKR I V Y D N + + Sbjct: 66 REDSKQEYMVMANPEIVE-KEESQVDEEGCLSVPELLAMVKRYRKIKVNYQDINGEPCSM 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + A LQHE+DHLNGILF+DHLS LKR++ KK+ K Sbjct: 125 TVEDRFAVVLQHEIDHLNGILFLDHLSSLKRNLYKKKVKKW 165 >gi|85700137|gb|ABC74518.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 103/160 (64%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+MLE M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMLETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|220903297|ref|YP_002478609.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867596|gb|ACL47931.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 172 Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 96/163 (58%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDP L+ V P+ ++ +I L +MLE MY G+GLAA Q+G R++V+D Sbjct: 5 IVTYPDPRLKEVCEPVAEVTDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVMDPSA 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQII 124 +NP V INP + ++ QEGCLS+P +YRADVKR + + + D + Sbjct: 65 QKDERNPRVLINPVLTLSGEEIISEQEGCLSVPMNYRADVKRMSRVHLSATDLDGNAIEE 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A +QHE DHL+GILFID +SRL+R + K+ K ++ Sbjct: 125 DLEDFDAIVMQHEYDHLDGILFIDKVSRLRRSLYDSKVKKWLK 167 >gi|152991610|ref|YP_001357331.1| peptide deformylase [Sulfurovum sp. NBC37-1] gi|151423471|dbj|BAF70974.1| formylmethionine deformylase [Sulfurovum sp. NBC37-1] Length = 174 Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 104/168 (61%), Gaps = 8/168 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +VI+PD L+++SR + + + +L+D+M E M + +G+GLAA+Q+GV R ++I++ Sbjct: 3 REIVIYPDKRLKQISREVGSFDGALHDLLDDMYETMIARNGVGLAAIQVGVDLRALIINV 62 Query: 64 ----QDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++ H ++N + INP I+ D +QEGCLS+P DV+R+ + V Y D Sbjct: 63 PLEKEEGEHDQPKENTLEMINPVIVEM-DGKEKFQEGCLSVPGVYEDVERAKHVKVEYYD 121 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 N + II D LA +QHE+DHL+G +FI+ LS LKR K+ +K Sbjct: 122 RNGEKHIIEDDDFLAIAMQHEIDHLDGKVFIEKLSFLKRKKFEKEWAK 169 >gi|160872447|ref|ZP_02062579.1| peptide deformylase [Rickettsiella grylli] gi|159121246|gb|EDP46584.1| peptide deformylase [Rickettsiella grylli] Length = 168 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/165 (39%), Positives = 103/165 (62%), Gaps = 3/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ PD LR + I ++ + LID+M E MY+ GIGLAA QI + +L VID+ Sbjct: 5 PIIQLPDVRLRVPTTSITVFDATLQQLIDDMFETMYAAKGIGLAAPQIAISKKLAVIDVT 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ + + + INP I+ + ++ +EGCLS+P R+ ++ ++ +D N + I Sbjct: 65 NN--KSHTLCLINPTIVEKKGE-ALLEEGCLSVPGIYDKAPRALWVKLQALDRNGKPYEI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE+DHLNG LF+DHLS LK+ + KK+ K+ + R Sbjct: 122 EAEGLLAHCIQHEVDHLNGKLFLDHLSPLKQQLARKKLDKIKKRR 166 >gi|15644409|ref|NP_229461.1| peptide deformylase [Thermotoga maritima MSB8] gi|3023626|sp|P96113|DEF_THEMA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|4982236|gb|AAD36728.1|AE001808_3 polypeptide deformylase [Thermotoga maritima MSB8] gi|1772608|emb|CAA71356.1| polypeptide deformylase [Thermotoga maritima] Length = 164 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 5/155 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D+ + Sbjct: 6 VFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-- 63 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P+ INP+I+ + V +EGCLS P+ +++RS I V+Y + ++ + Sbjct: 64 ---GPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELE 120 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 G A QHE DHLNG+L ID +S KR ++ KK+ Sbjct: 121 GYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKL 155 >gi|317011008|gb|ADU84755.1| peptide deformylase [Helicobacter pylori SouthAfrica7] Length = 174 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---QD 65 +P ILR +S+ + + + +D+M E M +++GIGLAA+Q+G+ R+++I+L D Sbjct: 9 YPSKILRTISKEVVSFDEKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPREDD 68 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 LQHKEDCLEIINPKWIETKGSL-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASALLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|292670259|ref|ZP_06603685.1| peptide deformylase [Selenomonas noxia ATCC 43541] gi|292648211|gb|EFF66183.1| peptide deformylase [Selenomonas noxia ATCC 43541] Length = 156 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/138 (44%), Positives = 90/138 (65%), Gaps = 4/138 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 +P+L++ + PIE++ ++D+M E MY+ +G+GLAA QIG RLVVID++D Sbjct: 11 NPVLKQKAEPIERLTKRHRQMLDDMAETMYAANGVGLAAPQIGKSLRLVVIDVEDE---H 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP +IT + V EGCLSIP DV+R+ +TV Y D ++ + + ADGLL Sbjct: 68 GLLELVNP-VITMREGSVVDSEGCLSIPKVYGDVERAERVTVEYTDRRSRRRTLTADGLL 126 Query: 131 ATCLQHELDHLNGILFID 148 A C+QHE DHL+G LFID Sbjct: 127 ARCIQHECDHLDGRLFID 144 >gi|166364192|ref|YP_001656465.1| peptide deformylase [Microcystis aeruginosa NIES-843] gi|159030946|emb|CAO88636.1| def [Microcystis aeruginosa PCC 7806] gi|166086565|dbj|BAG01273.1| polypeptide deformylase [Microcystis aeruginosa NIES-843] Length = 191 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/140 (43%), Positives = 90/140 (64%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I K++ I L ML+ MYS++GIGLAA Q+ V +L+VID + Sbjct: 24 DRVLRQPAKRIAKVDDSIRQLAREMLQTMYSSNGIGLAAPQVAVNKQLIVIDCEHDKPEN 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+II +S + +EGCLSIPD DV R I V Y D + + + A+GLL Sbjct: 84 PPLILINPQIIGYSRELCKAEEGCLSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLL 143 Query: 131 ATCLQHELDHLNGILFIDHL 150 A +QHE+DHLNG++F+D + Sbjct: 144 ARVIQHEMDHLNGVMFVDRV 163 >gi|291612480|ref|YP_003522637.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] gi|291582592|gb|ADE10250.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] Length = 167 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 3/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PD L +V++ +E+IN L+ +M E MY+ GIGLAA Q+ RL+VID+ Sbjct: 5 PIIQYPDERLHKVAKKVEQINEATRKLVRDMAETMYAAPGIGLAATQVDKHIRLIVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + VFINP+++ D +EGCLS+P V R+ F+TV +D + + + Sbjct: 65 ET--HDDLKVFINPELVDSMGDKE-NEEGCLSVPGIYEKVTRAEFVTVNALDEHGKPFTL 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHE+DHL G +F++ LS LK+ I K+ K Sbjct: 122 NAEGLLAVCIQHEMDHLQGRVFVEKLSHLKQTRIRAKLKK 161 >gi|257784671|ref|YP_003179888.1| peptide deformylase [Atopobium parvulum DSM 20469] gi|257473178|gb|ACV51297.1| peptide deformylase [Atopobium parvulum DSM 20469] Length = 180 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 1/151 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PDP L + I+ IN D+ + ++ML+VMY+TDG+GLA QIG + R+VVID+ Sbjct: 8 MVLWPDPRLSQKCEEIDDINDDVRKMAEHMLKVMYATDGVGLAGPQIGYMKRMVVIDVDY 67 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++NP V INP+I + VY+EGCLS P V R + + V + + Sbjct: 68 PNGQENPFVLINPEIKVADGEPRVYEEGCLSFPGITVPVTRPSHVVVHAYNLDGDLMRYE 127 Query: 126 ADG-LLATCLQHELDHLNGILFIDHLSRLKR 155 A+G L A CLQHE+DH+NG+ DHL R Sbjct: 128 AEGDLFAVCLQHEIDHINGVTMPDHLGPGAR 158 >gi|226313317|ref|YP_002773211.1| peptide deformylase [Brevibacillus brevis NBRC 100599] gi|226096265|dbj|BAH44707.1| peptide deformylase [Brevibacillus brevis NBRC 100599] Length = 158 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/148 (43%), Positives = 91/148 (61%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDPILR + + K NS++ L+D+M + MY DG+GLAA Q+G+ R++V Sbjct: 1 MAIRTIVKHPDPILREKAMVVTKFNSNLHKLLDDMADTMYDADGVGLAAPQVGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D + INP+II + Y EGCLSIP + DV+R +I +R D N Sbjct: 61 MDCGD-----GLIEMINPEIIEHEGEQYDYPEGCLSIPGLQGDVRRHKWIKLRGHDRNGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + AD LL+ C QHE+DHLNG+LFID Sbjct: 116 VVELEADDLLSRCAQHEIDHLNGVLFID 143 >gi|159902617|ref|YP_001549961.1| peptide deformylase [Prochlorococcus marinus str. MIT 9211] gi|159887793|gb|ABX08007.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9211] Length = 201 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 89/138 (64%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR+ ++ + K+++ I LI ML MYS GIGLAA Q+G+ +L+VIDL P+ Sbjct: 41 LRQTAQRVSKVDNSIRTLIKKMLHSMYSAKGIGLAAPQVGIHKQLLVIDLDIENSTTPPI 100 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V INP+I FS Y+EGCLSIP +V R + I + + D + + + ADGLL+ C Sbjct: 101 VLINPQITDFSAAIETYEEGCLSIPGVYLNVIRPSSIKLNFRDEMGRPKKMNADGLLSRC 160 Query: 134 LQHELDHLNGILFIDHLS 151 +QHE+DHLNG+LF+D ++ Sbjct: 161 IQHEMDHLNGVLFVDRVT 178 >gi|309389021|gb|ADO76901.1| peptide deformylase [Halanaerobium praevalens DSM 2228] Length = 150 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 59/143 (41%), Positives = 93/143 (65%), Gaps = 5/143 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR ++ I+++N LIDNM E MY+ DG+GLAA QIG+L R+ V+D+++ Sbjct: 11 DPVLRTKAKEIDEVNKKTNELIDNMFETMYAEDGVGLAAPQIGMLKRIAVVDIREG---- 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 N ++ INP+II + ++ +EGCLSIP DV R+ I V+ ++ + A+G Sbjct: 67 NKVILINPEIIE-KEGKAIMEEGCLSIPGETGDVIRAEKIKVKSLNRKGKEVTFLAEGFE 125 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A +QHE+DHL+GILF+D + ++ Sbjct: 126 ARAIQHEIDHLDGILFVDKIIKI 148 >gi|315637680|ref|ZP_07892885.1| peptide deformylase [Arcobacter butzleri JV22] gi|315478027|gb|EFU68755.1| peptide deformylase [Arcobacter butzleri JV22] Length = 171 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 104/164 (63%), Gaps = 4/164 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +P+ +LR S+ +EK +S++ L+D+M E M + +G+GLAA+Q+ V ++VI+L Sbjct: 3 REVITYPNKLLRLKSKDVEKFDSELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVINL 62 Query: 64 --QDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ KN ++ INP +IT D V+ EGCLS+P + DV R+ I V Y + + Sbjct: 63 PNEEDVQDKNDLIEAINP-VITHKDGTQVFTEGCLSVPGFSEDVTRAEHIVVEYFNRFGE 121 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + ++G LA QHE++HL+G LFI++LS +KR K+ K Sbjct: 122 KQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKK 165 >gi|332709623|ref|ZP_08429583.1| peptide deformylase [Lyngbya majuscula 3L] gi|332351656|gb|EGJ31236.1| peptide deformylase [Lyngbya majuscula 3L] Length = 187 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/149 (40%), Positives = 93/149 (62%), Gaps = 2/149 (1%) Query: 5 PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL I D +LR+ ++ + K++ +I L + ML+ MYS DGIGLAA Q+G+ +++V+D Sbjct: 16 PLTIHYLGDRVLRQPAKRVAKVDQNIRKLAEQMLQTMYSADGIGLAAPQVGINKQMIVVD 75 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + + P+V INP+I +F QEGCLSIP DV R I V Y D N + + Sbjct: 76 CEPNNQDNQPLVLINPEIKSFGSTPCDGQEGCLSIPGVYLDVTRPDEIEVAYKDQNGRPR 135 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + A+GLL+ +QHE+DHL G++F+D + Sbjct: 136 TLKANGLLSRVIQHEIDHLKGVMFVDRVQ 164 >gi|288574972|ref|ZP_06393329.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570713|gb|EFC92270.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 164 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 6/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I+PDP+LR ++ IE+ + + + ++ M +MY DG+GLAA Q+G ++ V Sbjct: 1 MSDRTIRIYPDPVLREPTKEIERFDDNFKSFLEEMESLMYEYDGVGLAAPQVGESLKVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + H V INP+I+ + D V QEGCLS P DV R A + V D N + Sbjct: 61 IAYEGKLH-----VLINPRIVDY-DGRQVDQEGCLSFPGIFEDVARPASVVVEAQDENGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A+G LA + HE+DHLNG L IDHLS +KR+M+ Sbjct: 115 PYSIEAEGFLARAMCHEIDHLNGKLMIDHLSPMKREMV 152 >gi|254526876|ref|ZP_05138928.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202] gi|221538300|gb|EEE40753.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202] Length = 201 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 98/161 (60%), Gaps = 5/161 (3%) Query: 5 PLVIFP--DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL I+ LR ++ I K++ DI L ML+ MYS GIGLAA Q+G+ L+VID Sbjct: 30 PLEIYKLGSKALRTTAKRISKVDIDIRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVID 89 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P++ INP+I + + Y+EGCLSIP +V R + I +++ D + + Sbjct: 90 INFEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPR 149 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR---LKRDMITK 160 + ADGLLA C+QHE+DHL G+LF+D ++ LK+++I + Sbjct: 150 KMNADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELIKE 190 >gi|302338169|ref|YP_003803375.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] gi|301635354|gb|ADK80781.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] Length = 161 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 4/159 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ + +LR + + +++ I L D+M+ M+ DG+GLAA QIGVL RL V Sbjct: 3 ILTLGNELLRERTATVAEVDESIRRLADDMIVTMHEDDGVGLAAPQIGVLKRLFVC---- 58 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H P VFINP+II S + Y+EGCLSIP ADV R I V+ +D N + + Sbjct: 59 HVRGDVPRVFINPEIIGTSQEQVRYEEGCLSIPGIYADVLRPESIQVQAIDENGKAFKLA 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA +QHE+DHL G+LFIDHL KR + K K Sbjct: 119 AEGLLARVIQHEMDHLKGVLFIDHLEERKRRRLLKLYEK 157 >gi|312890426|ref|ZP_07749963.1| peptide deformylase [Mucilaginibacter paludis DSM 18603] gi|311297196|gb|EFQ74328.1| peptide deformylase [Mucilaginibacter paludis DSM 18603] Length = 190 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 6/168 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +K P++ + DP+LRR + IE I L++NM E MY+ G+GLAA Q+G+ RL V Sbjct: 1 MKYPIIAYGDPVLRRAATNIEPDEYPHIKELVENMFETMYAARGVGLAAPQVGLSMRLFV 60 Query: 61 IDLQ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID D K+ VFIN K++ + + + EGCLSIPD R DV R + + Y Sbjct: 61 IDATPFDDDEPELKDFKKVFINAKVLEETGEEWSFNEGCLSIPDIREDVYRKPVVRLSYY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D N +H GL A +QHE DH+ G LF D LS L++ +I KK++ Sbjct: 121 DENWKHHEETFKGLAARVIQHEYDHIEGKLFTDKLSPLRKRLIQKKLT 168 >gi|225010669|ref|ZP_03701139.1| peptide deformylase [Flavobacteria bacterium MS024-3C] gi|225005222|gb|EEG43174.1| peptide deformylase [Flavobacteria bacterium MS024-3C] Length = 196 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 98/175 (56%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+V + DP+L++V+ I + ++ +LI+NM E MY G+GLAA QIG+ RL VID Sbjct: 4 PIVAYGDPVLKKVANAIAADHPNLESLIENMWETMYHAHGVGLAAPQIGLPIRLFVIDAT 63 Query: 64 -----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + A + VFIN I + + + EGCLSIPD R DV R IT+ Sbjct: 64 PFADDEDLTQSEQDALKNFKAVFINATITEETGEEWTFNEGCLSIPDVREDVIRKPKITI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y D + DGL+A +QHE DH+ GILF D LS LK+ ++ ++S + + Sbjct: 124 TYQDETFKTHTKTFDGLVARVIQHEYDHIEGILFTDKLSSLKKRILKGRLSNISK 178 >gi|160896282|ref|YP_001561864.1| peptide deformylase [Delftia acidovorans SPH-1] gi|160361866|gb|ABX33479.1| peptide deformylase [Delftia acidovorans SPH-1] gi|162662271|gb|EDQ49167.1| predicted protein [Physcomitrella patens subsp. patens] Length = 170 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L V++P+ K++ I L+ +M MY G+GLAA Q+ V R+VV+D+ Sbjct: 5 PILCYPDPRLHTVAKPVAKVDDRIRQLVQDMYATMYDAQGVGLAATQVNVHERVVVVDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P INP+++ S++ + +EGCLS+P V+RS I V+ +D N +II Sbjct: 65 EG--RDEPFALINPELLWASEETQLGEEGCLSVPGIYDGVERSTAIKVKALDENGNERII 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+G A C+QHE+DHL G +F+++LS LKR+ I K+ K Sbjct: 123 EAEGFKAICIQHEMDHLMGKVFVEYLSPLKRNRIKTKLLK 162 >gi|182677516|ref|YP_001831662.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633399|gb|ACB94173.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] Length = 165 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 100/169 (59%), Gaps = 4/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FPDP L ++ +E + + L D+++E +++ GIG+ A IGV RLV Sbjct: 1 MAVRPVIRFPDPRLSMAAQKVEHFDETLRTLADDLVESLHAAHGIGITAPHIGVPARLVA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + R +++NP+II SD +QEG +S+P V+R A I VRY D + Sbjct: 61 LELTPNQTR----LYVNPEIIWSSDTKIRHQEGSVSMPGVTEIVERCAEIHVRYQDLDGS 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ADG LA C QHE+D L+G+ +I LSRLKR+ + K+ KL R Sbjct: 117 VHIEKADGFLAICHQHEIDQLDGLFWIQRLSRLKRERVIKRYEKLASDR 165 >gi|34558486|ref|NP_908301.1| peptide deformylase [Wolinella succinogenes DSM 1740] gi|39930815|sp|Q7M7M2|DEF_WOLSU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|34481780|emb|CAE11201.1| POLYPEPTIDE DEFORMYLASE PDF FORMYLMETHIONINEDEFORMYLASE [Wolinella succinogenes] Length = 170 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 99/163 (60%), Gaps = 4/163 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +P P+L++ S P+ + ++ +D M M + +G+GLAAVQ+G R +++++ Sbjct: 3 PIITYPHPLLKKRSEPVTLFDEELRQFLDEMYITMLAKNGVGLAAVQVGNPIRALIVNIP 62 Query: 65 D---HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + R+N + INP+ ++ + + EGCLS+P++ DV R + + Y D + Sbjct: 63 DEEGNQERENLLEIINPEFLSKEGEIQ-FNEGCLSVPEFYEDVTRFDRVRLTYQDRYGER 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A+G LA LQHE+DHLNGILFID LS +KR K++ K Sbjct: 122 HEIEAEGYLAVALQHEIDHLNGILFIDKLSLIKRKKFEKELKK 164 >gi|318040515|ref|ZP_07972471.1| peptide deformylase [Synechococcus sp. CB0101] Length = 200 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 90/141 (63%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR ++ I K++ I +L +ML MY+ GIGLAA QIG +L+VIDL+ + Sbjct: 37 DQVLRTPAKRIGKVDDSIRSLARDMLVSMYAAKGIGLAAPQIGEPLQLLVIDLEIEDPKS 96 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+I + Y+EGCLSIP DV R + + V Y D + + + ADGL+ Sbjct: 97 PPLILINPEITSVGGSLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDEMGRPKRLKADGLM 156 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A C+QHE+DHLNG+LF+D ++ Sbjct: 157 ARCIQHEMDHLNGVLFVDRVT 177 >gi|86610195|ref|YP_478957.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558737|gb|ABD03694.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 196 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 89/141 (63%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I ++N +I L +ML+ MYS DGIGLAA Q+G+ R++V+DL Sbjct: 26 DKVLRQPAKRISQVNDEIRQLARDMLQTMYSFDGIGLAAPQVGIPKRMIVVDLYPDKPEV 85 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I + + QEGCLSIP +V R I V + D + + + AD LL Sbjct: 86 PPLVLINPEIREYIGEAVAGQEGCLSIPGVFCEVMRPEGIVVSFKDETGRPRTLRADDLL 145 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A +QHE+DHLNG+LF+DH+ Sbjct: 146 ARVIQHEIDHLNGVLFVDHVE 166 >gi|308062113|gb|ADO04001.1| peptide deformylase [Helicobacter pylori Cuz20] Length = 175 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +DNM E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDNMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|85375926|gb|ABC70185.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 HR++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHREDCLEIINPKWIETGGSI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|260778893|ref|ZP_05887785.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] gi|260605057|gb|EEX31352.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] Length = 168 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/163 (41%), Positives = 105/163 (64%), Gaps = 5/163 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQ 64 ++ PDP L+ + + I S + LID+MLE +Y+T +GIGLAA Q+G +V+IDL Sbjct: 6 ILTAPDPKLKIKAEKVSDIQS-VQTLIDDMLETLYATSNGIGLAATQVGHREAIVIIDLS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P++ +NP+++ + ++ QEGCLS+PDY ADV+R + V +D + + I Sbjct: 65 ES--RDQPLILVNPEVVE-GKNRAMGQEGCLSVPDYYADVERYTSVVVEALDRHGEPVRI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +D LA +QHE+DHL G LFID+LS LK+ M KK+ K ++ Sbjct: 122 ESDDFLAIVMQHEIDHLAGNLFIDYLSPLKQRMALKKVKKHIK 164 >gi|301632277|ref|XP_002945217.1| PREDICTED: peptide deformylase 1-like [Xenopus (Silurana) tropicalis] Length = 217 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 59/138 (42%), Positives = 89/138 (64%), Gaps = 2/138 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L +V++P+ +++ I +L+ +ML MY GIGLAA Q+ V R+VVID Sbjct: 5 PILCYPDPRLHQVAQPVRAVDARIQSLVSDMLATMYDAQGIGLAATQVDVHERVVVIDTS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R P+V INP+I+ S + V EGCLS+P V+R + + VR +D ++I Sbjct: 65 EE--RNQPLVLINPEIVWASAEKVVRDEGCLSVPGIYDGVERCSAVHVRALDEKGAARVI 122 Query: 125 YADGLLATCLQHELDHLN 142 A+GLLA C+QHE+DHL Sbjct: 123 QAEGLLAVCMQHEMDHLT 140 >gi|170288957|ref|YP_001739195.1| peptide deformylase [Thermotoga sp. RQ2] gi|281412566|ref|YP_003346645.1| peptide deformylase [Thermotoga naphthophila RKU-10] gi|238688844|sp|B1LB14|DEF_THESQ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|170176460|gb|ACB09512.1| peptide deformylase [Thermotoga sp. RQ2] gi|281373669|gb|ADA67231.1| peptide deformylase [Thermotoga naphthophila RKU-10] Length = 164 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 5/155 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D+ + Sbjct: 6 VFGDPVLRKRAKPVTKFDDNLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-- 63 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P+ INP+I+ + V +EGCLS P+ +++RS I V+Y + ++ + Sbjct: 64 ---GPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELE 120 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 G A QHE DHLNG+L ID +S KR ++ KK+ Sbjct: 121 GYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKL 155 >gi|225012717|ref|ZP_03703152.1| peptide deformylase [Flavobacteria bacterium MS024-2A] gi|225003250|gb|EEG41225.1| peptide deformylase [Flavobacteria bacterium MS024-2A] Length = 195 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 97/173 (56%), Gaps = 12/173 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P+V + P+L++ + I + ++ LI+NM E MY+++G+GLAA QIG+ RL VID Sbjct: 4 PIVAYGAPVLKKEAAEISEEYPNLDQLIENMWETMYASNGVGLAAPQIGLSIRLFVIDTA 63 Query: 63 ----------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L+ + VFINP +I + EGCLSIPD R DV R I + Sbjct: 64 PFSEDDELDELEAETLKSFKKVFINPVVIEEDGSLWEFNEGCLSIPDVREDVSRHERIKI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Y D + Q + GL A +QHE DH+ G+LF DHL+ LKR ++ +++ + Sbjct: 124 HYFDQQFKEQELVLTGLAARVVQHEYDHIEGVLFTDHLTPLKRRLLKNRLNSI 176 >gi|86142250|ref|ZP_01060760.1| peptide deformylase [Leeuwenhoekiella blandensis MED217] gi|85831002|gb|EAQ49459.1| peptide deformylase [Leeuwenhoekiella blandensis MED217] Length = 196 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P+V + DP+LR+ + I + ++ L+ NM E MY G+GLAA QIG RL V+D Sbjct: 4 PIVAYGDPVLRKKAVEIPQDYPELKELVANMFETMYGASGVGLAAPQIGKAIRLFVVDAT 63 Query: 63 -------LQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L D R FINP+I+ + D + EGCLSIP DV R I + Sbjct: 64 PFADDEDLSDEEQERLRTFKKAFINPQILEETGDEWAFSEGCLSIPGINEDVFRCPIIKI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +Y D + + DGLLA +QHE DH+ GILF D LS LK+ +I K++ + + Sbjct: 124 KYQDEDFNEHVEEFDGLLARVIQHEYDHIEGILFTDKLSSLKKRIIKSKLAGISK 178 >gi|322421200|ref|YP_004200423.1| peptide deformylase [Geobacter sp. M18] gi|320127587|gb|ADW15147.1| peptide deformylase [Geobacter sp. M18] Length = 171 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/167 (40%), Positives = 108/167 (64%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV+K ++ +PDP L++ S P+ I L+ +M E MY G+GLAA QIGV R++V Sbjct: 1 MVRK-ILTYPDPELKKRSLPVTVITDKTRELVRDMAETMYDAPGVGLAAPQIGVHQRIIV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +V INP+II ++ + +EGCLS+P + A+V+R A + V+ ++ + + Sbjct: 60 IDVSCKDEKPELIVAINPEII-HAEGEAYEEEGCLSVPKFSANVRRHAKVVVKSLNLDGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +I AD LLA QHE+DHL+G+LFIDHLS LK+ + K+ + ++ Sbjct: 119 EVVIRADDLLAIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQRALE 165 >gi|149194678|ref|ZP_01871773.1| peptide deformylase [Caminibacter mediatlanticus TB-2] gi|149135101|gb|EDM23582.1| peptide deformylase [Caminibacter mediatlanticus TB-2] Length = 173 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 100/153 (65%), Gaps = 4/153 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ IL+++S+P+E+ +S++ L+D+M E M + +GIGLAA+Q+GV R ++IDL D Sbjct: 6 IVTYPNKILKQISKPVERFDSELHKLLDDMYETMIAKNGIGLAAIQVGVPIRALLIDLGD 65 Query: 66 HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +++ + INP+ + + Y EGCLS+PDY +V+R + V++ D + Sbjct: 66 EEGKQSKDTLIEVINPEFLEWDGSLK-YNEGCLSVPDYFDEVERYKKVKVKFFDRFGKEH 124 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I+ A+ LL+ QHE DHL+G +FI+ L +KR Sbjct: 125 IVDAEDLLSVAFQHETDHLDGHVFIERLDYIKR 157 >gi|269123156|ref|YP_003305733.1| peptide deformylase [Streptobacillus moniliformis DSM 12112] gi|268314482|gb|ACZ00856.1| peptide deformylase [Streptobacillus moniliformis DSM 12112] Length = 169 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+K + ++ PILR+ S + + N ++ N +D M++ M +GIGLAA Q+G+ R V Sbjct: 1 MIKLNIYVYEAPILRKKSEEVVEFNDELRNTLDEMVKTMRLANGIGLAANQVGIGKRFFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ D + +NP+I++F ++ +QEGCLSIP +V R I VRY D N Sbjct: 61 LEIDDEITK-----VVNPEILSFGEEMVEFQEGCLSIPGIFKNVLRPESIVVRYQDENGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 +GL + QHELDH++GILFID +S + R++I KK+ Sbjct: 116 FVERELNGLKSRAFQHELDHIDGILFIDKISPMSRNLIRKKLE 158 >gi|210134993|ref|YP_002301432.1| peptide deformylase [Helicobacter pylori P12] gi|238058211|sp|B6JM24|DEF_HELP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|210132961|gb|ACJ07952.1| polypeptide deformylase [Helicobacter pylori P12] Length = 174 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 VQHKEDCLEIINPKWIETKGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|254457336|ref|ZP_05070764.1| peptide deformylase [Campylobacterales bacterium GD 1] gi|207086128|gb|EDZ63412.1| peptide deformylase [Campylobacterales bacterium GD 1] Length = 174 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 103/163 (63%), Gaps = 4/163 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PD IL+++S +EK + ++ +L+D M +M T+GIGLAA+Q+ +++++++ + Sbjct: 5 IVEYPDKILKQISEKVEKFDKELHDLLDAMYPIMVKTNGIGLAAIQVARPKQVLILNIPE 64 Query: 66 HAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + N + +NP II D VYQEGCLS+P + D+ R ITV Y D +A + Sbjct: 65 EDGEQPIENLIEMVNP-IIVKKDGEIVYQEGCLSVPSFYEDIIRFENITVNYQDRDANTK 123 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + A+GLL+ +QHE+DHL GILFID LS +R K+ ++ Sbjct: 124 TLEANGLLSVAIQHEIDHLKGILFIDKLSYARRKKFEKEYKRM 166 >gi|209515834|ref|ZP_03264696.1| peptide deformylase [Burkholderia sp. H160] gi|209503682|gb|EEA03676.1| peptide deformylase [Burkholderia sp. H160] Length = 167 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 99/159 (62%), Gaps = 2/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +V++P+ ++N I L+ +M E MY+ G+GLAA Q+ V R++VID+ + Sbjct: 9 YPDKRLHKVAKPVTEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + INP+I+ SD+ +EGCLS+P +V+R+ + VR ++ + + +G Sbjct: 67 HDELLALINPEIVWSSDERKFSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFELDCEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 127 LLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLAH 165 >gi|270692640|ref|ZP_06222945.1| peptide deformylase [Haemophilus influenzae HK1212] gi|270316024|gb|EFA28060.1| peptide deformylase [Haemophilus influenzae HK1212] Length = 132 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/130 (48%), Positives = 89/130 (68%), Gaps = 3/130 (2%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M + MY GIGLAA Q+ +L R++ ID++ ++N V INP+I+ S+ + +EGC Sbjct: 1 MFDTMYQEKGIGLAAPQVDILQRIITIDVE--GDKQNQFVLINPEILA-SEGETGIEEGC 57 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 LSIP +RA V R +TVR +D + + + ADGLLA C+QHE+DHLNGILF+D+LS LK Sbjct: 58 LSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 117 Query: 155 RDMITKKMSK 164 R I +K+ K Sbjct: 118 RQRIKEKLLK 127 >gi|126733795|ref|ZP_01749542.1| formylmethionine deformylase [Roseobacter sp. CCS2] gi|126716661|gb|EBA13525.1| formylmethionine deformylase [Roseobacter sp. CCS2] Length = 166 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P V++P P LR + P+ I ++ + D M+ M + G+GLAA Q+GV L V Sbjct: 1 MTHRPFVMWPHPALRTAATPVAVITDEVRAIWDEMIVAMDTMPGVGLAAPQLGVEMALAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R + NP I+ S + V++EG ++P A V R +TVR+++ + Q Sbjct: 61 IDASEE--RGQAIRMANPTILHSSVEPRVHEEGSPNLPGVWAKVTRPRAVTVRFLNADGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL AT +QH++DHL+G +F DHL+R+KRDM+ KK +KL Sbjct: 119 WDRQDFVGLWATSVQHQIDHLSGKMFFDHLTRVKRDMLIKKSAKL 163 >gi|42527153|ref|NP_972251.1| polypeptide deformylase [Treponema denticola ATCC 35405] gi|41817577|gb|AAS12162.1| polypeptide deformylase [Treponema denticola ATCC 35405] gi|325474196|gb|EGC77384.1| polypeptide deformylase [Treponema denticola F0402] Length = 169 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/145 (43%), Positives = 93/145 (64%), Gaps = 5/145 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 + LR VS+P+EKI+ +I +LID M + +GIGLAA Q+G RL ++ + + + Sbjct: 8 EETLREVSKPVEKIDENIKSLIDEMFVTVKKENGIGLAAPQVGENIRLFIVFINEQKY-- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 VFINP+II S + + +EGCLSIP +V R + + V++++ + + + I A GLL Sbjct: 66 ---VFINPEIIETSQEMCLMEEGCLSIPKVYDEVMRPSAVKVQFLNIDGKIKTIEASGLL 122 Query: 131 ATCLQHELDHLNGILFIDHLSRLKR 155 A +QHE DHLNGILFID LS K+ Sbjct: 123 ARVIQHENDHLNGILFIDRLSEEKK 147 >gi|119510121|ref|ZP_01629260.1| peptide deformylase [Nodularia spumigena CCY9414] gi|119465182|gb|EAW46080.1| peptide deformylase [Nodularia spumigena CCY9414] Length = 187 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 88/141 (62%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I K++ +I L ML+ MYS+DGIGLAA Q+G+ +L+VID + Sbjct: 24 DRVLRQDAKRIAKVDDEIRQLAREMLQTMYSSDGIGLAAPQVGIHKQLIVIDCEPDNPDH 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP I S + V QEGCLSIP DVKR + + Y D + + + A LL Sbjct: 84 PPLVLINPTIKQMSKEVCVAQEGCLSIPKVYLDVKRPEAVEIAYKDEYGRPKTLKATDLL 143 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A C+QHE+DHL G++F+D + Sbjct: 144 ARCIQHEMDHLKGVVFVDRVE 164 >gi|113955292|ref|YP_731667.1| peptide deformylase [Synechococcus sp. CC9311] gi|122945537|sp|Q0I7A5|DEF_SYNS3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|113882643|gb|ABI47601.1| peptide deformylase [Synechococcus sp. CC9311] Length = 202 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 92/156 (58%), Gaps = 7/156 (4%) Query: 3 KKPLVIFP-------DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 K+PL P D LR +R I K++ + +L +ML MY+ GIGLAA Q+GV Sbjct: 23 KEPLETAPLDIHTLGDDALRGDARRIGKVDERVRDLARDMLRSMYTASGIGLAAPQVGVH 82 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +L+VIDL P+V INP+I T S Y+EGCLSIP DV R I + + Sbjct: 83 QQLLVIDLDFETPSTPPLVLINPEITTCSASVDTYEEGCLSIPGVYLDVVRPTAIQLSFR 142 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + + + ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 143 DEMGRPRTMKADGLMARCIQHEMDHLRGVLFVDRVT 178 >gi|307637482|gb|ADN79932.1| Peptide deformylase [Helicobacter pylori 908] gi|325996072|gb|ADZ51477.1| Peptide deformylase [Helicobacter pylori 2018] gi|325997668|gb|ADZ49876.1| Peptide deformylase [Helicobacter pylori 2017] Length = 174 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 VQHKEDCLEIINPKWIETKGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|302392197|ref|YP_003828017.1| peptide deformylase [Acetohalobium arabaticum DSM 5501] gi|302204274|gb|ADL12952.1| peptide deformylase [Acetohalobium arabaticum DSM 5501] Length = 145 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 90/141 (63%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR ++P++++ LI NM + MY G+GLAA QIG+ R++V+D+ + Sbjct: 11 DPVLRTEAKPVDEVTEKTEGLIKNMQDTMYDASGVGLAAPQIGISKRVIVVDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+ INP+I+ S + +EGCLSIP+ +V+R+A + V +D + + I A+GLL Sbjct: 66 GPLALINPEIVESSGS-EIDEEGCLSIPNENGNVERAARVVVDALDSDGREVEIEAEGLL 124 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A LQHE+DHL GILF+D + Sbjct: 125 ARVLQHEIDHLEGILFVDKVE 145 >gi|300868003|ref|ZP_07112642.1| peptide deformylase [Oscillatoria sp. PCC 6506] gi|300334024|emb|CBN57820.1| peptide deformylase [Oscillatoria sp. PCC 6506] Length = 186 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 92/151 (60%), Gaps = 2/151 (1%) Query: 3 KKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 K PL I D LR+ ++ + ++++I L+ ML+ MYS +GIGLAA Q+ V +++V Sbjct: 14 KPPLTIHTLGDRALRQPAKRVASVDAEIRQLVREMLQTMYSAEGIGLAAPQVAVQKQVIV 73 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + P+V INP I +S + V+QEGCLSIP +VKR I V Y D + Sbjct: 74 VDCEPDNAANPPLVLINPSIKKYSGEVCVFQEGCLSIPGVYLEVKRPEAIEVFYRDEYGR 133 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Q + A LL+ +QHE+DHLNG+LF+D + Sbjct: 134 PQTLKATELLSRAIQHEMDHLNGVLFVDRVE 164 >gi|85700147|gb|ABC74523.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNSFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|157412419|ref|YP_001483285.1| peptide deformylase [Prochlorococcus marinus str. MIT 9215] gi|157386994|gb|ABV49699.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9215] Length = 201 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 5/159 (3%) Query: 5 PLVIFP--DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL I+ LR ++ I K++ D L ML+ MYS GIGLAA Q+G+ L+VID Sbjct: 30 PLEIYKLGSKTLRTTAKRISKVDIDTRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVID 89 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P++ INP+I + + Y+EGCLSIP +V R + I +++ D + + Sbjct: 90 INFEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPR 149 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR---LKRDMI 158 + ADGLLA C+QHE+DHL G+LF+D ++ LK+++I Sbjct: 150 KMNADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELI 188 >gi|85700133|gb|ABC74516.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKWIETGGSI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSVLKRKKFEKELKEL 167 >gi|15611796|ref|NP_223447.1| peptide deformylase [Helicobacter pylori J99] gi|8134402|sp|Q9ZL51|DEF_HELPJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|4155293|gb|AAD06310.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99] Length = 174 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 VQHKEDCLEIINPKWIETKGSI-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|170078943|ref|YP_001735581.1| peptide deformylase [Synechococcus sp. PCC 7002] gi|238689048|sp|B1XJP0|DEF_SYNP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169886612|gb|ACB00326.1| peptide deformylase [Synechococcus sp. PCC 7002] Length = 187 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 86/141 (60%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I K++ +I L ML+ MYS+ GIGLAA Q+GV RL+VID Sbjct: 24 DKVLRQKAKRIAKVDDEIRTLAKEMLQTMYSSQGIGLAAPQVGVNKRLIVIDTDPENPAN 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I F ++EGCLSIP DV R I V Y D + + I A GLL Sbjct: 84 APLVLINPEIKKFGQQLCPFEEGCLSIPGVHLDVIRPDEIEVSYRDEQGKPKRIKASGLL 143 Query: 131 ATCLQHELDHLNGILFIDHLS 151 + +QHE+DHL+G++F+D + Sbjct: 144 SRVIQHEIDHLDGVMFVDRVE 164 >gi|312884517|ref|ZP_07744221.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367829|gb|EFP95377.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] Length = 171 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 68/161 (42%), Positives = 101/161 (62%), Gaps = 5/161 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDL 63 P++ PDP L+ + + + + + ID+ML+ +YST +GIGLAA Q+G +VVIDL Sbjct: 5 PILTTPDPRLKYEAEQVTDFDK-VQSFIDDMLDTLYSTANGIGLAATQVGRKEAVVVIDL 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + R P++ +NPK++ + + QEGCLS+PDY ADV+R + V+ D Sbjct: 64 SEA--RDQPLILVNPKVVC-GKNREMGQEGCLSVPDYYADVERFTSVVVQAQDRLGNAIK 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +D LA +QHE+DHL+G LFID+LS LKR M KK+ K Sbjct: 121 VESDDFLAIVMQHEIDHLSGRLFIDYLSPLKRQMALKKVKK 161 >gi|317014203|gb|ADU81639.1| peptide deformylase [Helicobacter pylori Gambia94/24] Length = 174 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 VQHKEDCLEIINPKWIETKGSI-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|193215216|ref|YP_001996415.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110] gi|193088693|gb|ACF13968.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110] Length = 202 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 60/154 (38%), Positives = 99/154 (64%), Gaps = 5/154 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P+ +P+L +V++P++ +++++ I++M E MY+ DGIGLAA Q+G RL+V+D Sbjct: 23 PVYTLGEPVLNKVAKPLKGVDAEMKQFIEDMFETMYNADGIGLAAPQVGKSLRLLVVDVS 82 Query: 63 -LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++D+ K P+V INP+I+ + S +EGCLS+P +V R IT++Y D + Sbjct: 83 VMEDYQDEK-PLVVINPQILE-TKGLSTMEEGCLSVPGVHEEVTRPKQITLKYRDADFVE 140 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 ++ DG++A LQHE++HL G LFID+L R Sbjct: 141 RVEIYDGMMARVLQHEIEHLQGNLFIDNLDAKTR 174 >gi|49089809|gb|AAT51863.1| peptide deformylase [Helicobacter pylori] Length = 174 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|15645412|ref|NP_207586.1| peptide deformylase [Helicobacter pylori 26695] gi|3023623|sp|P56419|DEF_HELPY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2313922|gb|AAD07841.1| polypeptide deformylase (def) [Helicobacter pylori 26695] Length = 174 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|87301353|ref|ZP_01084194.1| peptide deformylase [Synechococcus sp. WH 5701] gi|87284321|gb|EAQ76274.1| peptide deformylase [Synechococcus sp. WH 5701] Length = 201 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 66/149 (44%), Positives = 89/149 (59%), Gaps = 2/149 (1%) Query: 5 PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL I D +LR+ ++ I K++ + L NML MYS GIGLAA Q+GV +++VID Sbjct: 30 PLTIHRLGDQVLRQSAKRISKVDESVRELARNMLRSMYSAHGIGLAAPQVGVHKQVLVID 89 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 L PMV +NP+I S + Y+EGCLSIP V R + V Y D + + Sbjct: 90 LDPENPATPPMVLVNPEINATSAALNTYEEGCLSIPGVYLSVVRPSEAEVSYRDEQGRPR 149 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 I ADGLLA C+ HE+DHL G+LF+D +S Sbjct: 150 RIKADGLLARCILHEMDHLKGVLFVDLVS 178 >gi|282858813|ref|ZP_06267958.1| peptide deformylase [Prevotella bivia JCVIHMP010] gi|282588382|gb|EFB93542.1| peptide deformylase [Prevotella bivia JCVIHMP010] Length = 186 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 98/174 (56%), Gaps = 16/174 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ + P+LR+V++ I D+ LI NM E ++DG+GLAA QIG R+VVIDL Sbjct: 4 PIYTYGQPVLRKVAQDIPTDYPDLQELIQNMFETCSASDGVGLAAPQIGKSIRVVVIDLD 63 Query: 64 ---------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113 +D+ H FIN I+ F D + + +EGCLS+P V+R+ + + Sbjct: 64 VMSDAFPEYKDYKH-----AFINGHILEFDDTETEIMEEGCLSLPGLHEKVERAKRVHIE 118 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++D N QH + DG LA +QHE DHL G +F D +S ++ MI KM ++Q Sbjct: 119 WLDENLQHHDEWVDGFLARVIQHEFDHLEGKVFTDRVSPFRKQMIKNKMKAMLQ 172 >gi|258593266|emb|CBE69605.1| Peptide deformylase (PDF) (Polypeptide deformylase) [NC10 bacterium 'Dutch sediment'] Length = 169 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 90/151 (59%), Gaps = 1/151 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++++P P++R+ S + IN ++ ID+M+E MY+ G+GLAA Q+G L R++V Sbjct: 1 MAKLSILLYPSPVIRKKSVSVTSINGELQRFIDDMVETMYAAPGMGLAAPQVGALKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D PM INP ++ V +EGCL IPD V R + V+ D N + Sbjct: 61 LDPSDDRTSHRPMALINPVLVAGEGQI-VDEEGCLCIPDLNEPVSRFKQVVVKAYDRNEK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I+ LLA LQHE+DHL+GILFID LS Sbjct: 120 EIILEGADLLARILQHEIDHLDGILFIDRLS 150 >gi|254445347|ref|ZP_05058823.1| peptide deformylase [Verrucomicrobiae bacterium DG1235] gi|198259655|gb|EDY83963.1| peptide deformylase [Verrucomicrobiae bacterium DG1235] Length = 191 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 17/178 (9%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64 +V + + +L +P+ K ++++ L +NM++ MY +GIGLAA Q+G+ V+DL Sbjct: 5 IVQYGEKVLHETGKPVTKFDAELAELFENMVDTMYEAEGIGLAAQQVGLPLMFCVVDLNG 64 Query: 65 ---------DHAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 D A PM NPK+ Y+EGCLS P+ R DV+R+ +I Sbjct: 65 CDPDFDYTLDGAKPPFDLFMPMAIANPKVELIKSKELAYEEGCLSFPEIRGDVERTDWIR 124 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D +I A+GLL C+QHE+DHLNGILFID R+K+ ++ K ++ QL+ Sbjct: 125 CEFQDLQGNPHVIEANGLLGRCIQHEVDHLNGILFID---RMKKRVLKKIQPQVNQLK 179 >gi|118137648|pdb|2EW5|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In Complex With Inhibitor gi|118137649|pdb|2EW6|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In Complex With Inhibitor gi|118137650|pdb|2EW7|A Chain A, Crystal Structure Of Helicobacter Pylori Peptide Deformylase Length = 181 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 8 YPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 67 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 68 VQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 126 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 127 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 166 >gi|222056880|ref|YP_002539242.1| peptide deformylase [Geobacter sp. FRC-32] gi|221566169|gb|ACM22141.1| peptide deformylase [Geobacter sp. FRC-32] Length = 168 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 107/169 (63%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + ++++P P+L+++ P+ I+ +I L+ ++L+ M++ G +G+AA QIGV R+ Sbjct: 1 MPGQKILLYPHPVLKKLCHPVGAIDGEIKGLLQDLLDCMHAGPGSVGVAAPQIGVTLRVC 60 Query: 60 VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ + + K+ + INP +IT ++ +EGC+S+PDY DV+R+ ITVR+ Sbjct: 61 VVDVSNSRNGKDNNHGLLQLINP-VITERSGAAIMREGCMSVPDYTGDVERATEITVRFT 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N + + A G A +QHE+DHL+G+LF+D ++ LK + +K K Sbjct: 120 DGNGIEREVKASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKNYK 168 >gi|261839392|gb|ACX99157.1| peptide deformylase [Helicobacter pylori 52] Length = 175 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ I +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEIVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|188527363|ref|YP_001910050.1| peptide deformylase [Helicobacter pylori Shi470] gi|238691921|sp|B2UT38|DEF_HELPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188143603|gb|ACD48020.1| peptide deformylase [Helicobacter pylori Shi470] Length = 175 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ I +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEIVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|300854442|ref|YP_003779426.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM 13528] gi|300434557|gb|ADK14324.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM 13528] Length = 152 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 8/152 (5%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D ILR+ SR +E+IN I L+D+M E +Y DG+GLAA Q+GVL R++VID+ + Sbjct: 9 YGDSILRKKSRKVEEINERIHVLLDDMEETLYEEDGVGLAAPQVGVLKRVIVIDVGE--- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + +NP+I T+S+ +V EGCLSIP +V+R + V+ ++ + +I + Sbjct: 66 --GILKLVNPEI-TYSEGKAVDIEGCLSIPGSEGEVERPKKVKVKALNEKGEEIVIEGED 122 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 LLA L HE+DHLNGILFID + +K+ +TK Sbjct: 123 LLARALCHEIDHLNGILFIDKI--IKKGEVTK 152 >gi|85700129|gb|ABC74514.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKWIETGGSI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|224373737|ref|YP_002608109.1| peptide deformylase [Nautilia profundicola AmH] gi|254767597|sp|B9L6X1|DEF_NAUPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|223589661|gb|ACM93397.1| peptide deformylase [Nautilia profundicola AmH] Length = 174 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 101/160 (63%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +L+++S+P+E+ + D+ L+D+M E M +G+GLAA+Q+ V R ++ID+ D Sbjct: 6 IVTYPNKVLKQISKPVERFDKDLHKLLDDMYETMIKNNGVGLAAIQVAVPIRALLIDIGD 65 Query: 66 HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +++ + INP+ +T+ D EGCLS+PDY +V+R + V++ D + Sbjct: 66 EEGKQSKDTLIEVINPEFLTW-DGTQKDTEGCLSVPDYFDEVERYKNVKVKFFDRFGKEH 124 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 ++ A+GLL+ QHE DHL+G LF++ L +KR K+ Sbjct: 125 VMEAEGLLSVAFQHETDHLDGHLFVERLDYIKRKKFEKEW 164 >gi|255262069|ref|ZP_05341411.1| peptide deformylase [Thalassiobium sp. R2A62] gi|255104404|gb|EET47078.1| peptide deformylase [Thalassiobium sp. R2A62] Length = 164 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 6/164 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + V++PD LR + + +I DI + D M+E M + G+GLAAVQIGV RL V+D Sbjct: 3 RSYVMWPDKRLRTAASDVAEITDDIRAIWDEMIEAMDAMPGVGLAAVQIGVPLRLAVVDA 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D R + NP+I+ S + +QE ++P A V R +TV++MD N ++ Sbjct: 63 SD--ARGQAIRMANPEILFASAEMRTHQEASPNLPGVSAIVGRPRAVTVQFMDANG--EL 118 Query: 124 IYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + D GL AT +QH++DHL G ++ DH+SR KRDM+ KK +KL Sbjct: 119 VQRDLVGLWATSVQHQIDHLAGRMYFDHVSRTKRDMLIKKSAKL 162 >gi|4098215|gb|AAD09580.1| N-formylmethionylaminoacyl-tRNA deformylase [Helicobacter pylori] Length = 174 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKWIETGGSI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|317178847|dbj|BAJ56635.1| peptide deformylase [Helicobacter pylori F30] Length = 175 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|332673404|gb|AEE70221.1| peptide deformylase [Helicobacter pylori 83] Length = 174 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPKEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 VQHKEDCLEIINPKFIETGGSI-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEMDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|317009197|gb|ADU79777.1| peptide deformylase [Helicobacter pylori India7] Length = 174 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 103/160 (64%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPKEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK+I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKLIEAGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|85700127|gb|ABC74513.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKWIGTGGSI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|255746035|ref|ZP_05419982.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262162126|ref|ZP_06031141.1| peptide deformylase [Vibrio cholerae INDRE 91/1] gi|255735789|gb|EET91187.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262028201|gb|EEY46859.1| peptide deformylase [Vibrio cholerae INDRE 91/1] gi|327485372|gb|AEA79778.1| Peptide deformylase [Vibrio cholerae LMA3894-4] Length = 145 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 68/145 (46%), Positives = 96/145 (66%), Gaps = 4/145 (2%) Query: 26 SDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 + + LID++L+ +Y+TD GIGLAA Q+G +VVIDL D+ R P+V INPK+++ S Sbjct: 2 ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLSDN--RDQPLVLINPKVVSGS 59 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + + QEGCLS+PDY ADV+R + V +D + I LA +QHE+DHL+G Sbjct: 60 NK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGN 118 Query: 145 LFIDHLSRLKRDMITKKMSKLVQLR 169 LFID+LS LK+ M KK+ K V+ R Sbjct: 119 LFIDYLSPLKQQMAMKKVKKHVKNR 143 >gi|239617141|ref|YP_002940463.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1] gi|239505972|gb|ACR79459.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1] Length = 164 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 7/163 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+LR S I+K + ++ + + +MY DG+GLAA Q+ VL R+ V D Sbjct: 3 IVYIGNPVLREKSEAIKKFDDNLKTFVKELTSIMYKEDGVGLAAPQVAVLKRMFVFD--- 59 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQII 124 P V INP+I+ S + + +EGCLSIP ADV+R ++ +RY D + H+ + Sbjct: 60 --DGSGPKVIINPEILEKSKELVIMEEGCLSIPGVYADVERPEWVKMRYQDVDGNVHEEL 117 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G +QHE DHLNGILFID+LS K+ MI K+ ++++ Sbjct: 118 F-EGYAGRIVQHEYDHLNGILFIDYLSPAKKMMIRPKLREIMK 159 >gi|85700135|gb|ABC74517.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAVQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|308182949|ref|YP_003927076.1| peptide deformylase [Helicobacter pylori PeCan4] gi|308065134|gb|ADO07026.1| peptide deformylase [Helicobacter pylori PeCan4] Length = 175 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETKGTI-IYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|254779233|ref|YP_003057338.1| peptide deformylase [Helicobacter pylori B38] gi|254001144|emb|CAX29102.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Helicobacter pylori B38] Length = 174 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|256823831|ref|YP_003147794.1| peptide deformylase [Kangiella koreensis DSM 16069] gi|256797370|gb|ACV28026.1| peptide deformylase [Kangiella koreensis DSM 16069] Length = 175 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 93/156 (59%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPDP LR ++P+ ++ ID+M E MY+ GIGLAA Q+ + + VID+ D Sbjct: 9 FPDPRLRTKAKPVTDFGDELQQQIDSMFETMYAAPGIGLAATQVNIHKQFFVIDVSDD-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P+VFINP+I+ +EGCLS P A V+R+ I V+ +D + + + Sbjct: 67 KSEPLVFINPQIVE-KRGVEEMEEGCLSFPGVYAKVQRANEIVVKALDRHGKPFEMDTGE 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DH+ G LF+D+LS LKR+ I K + K Sbjct: 126 LLAVCIQHENDHIEGKLFVDYLSPLKRNRIRKMLEK 161 >gi|33863868|ref|NP_895428.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313] gi|124022020|ref|YP_001016327.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303] gi|39930996|sp|Q7V5F9|DEF2_PROMM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|33635451|emb|CAE21776.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9313] gi|123962306|gb|ABM77062.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9303] Length = 201 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 58/139 (41%), Positives = 91/139 (65%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +LR+ +R I K++ + +L+ +ML MY+ GIGLAA Q+G+ +L+V+DL P Sbjct: 40 VLRQSTRRIGKVDESVRDLVRDMLRSMYAAKGIGLAAPQVGIHKQLLVLDLDLETPTTPP 99 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 +V INP+II+ S Y+EGCLSIP +V R + I + + D + + + ADGL+A Sbjct: 100 VVLINPEIISSSATVETYEEGCLSIPGVYLNVVRPSEIVLSFRDEMGRPRKMKADGLMAR 159 Query: 133 CLQHELDHLNGILFIDHLS 151 C+QHE+DHL G+LF+D ++ Sbjct: 160 CIQHEMDHLEGVLFVDRVT 178 >gi|259417997|ref|ZP_05741916.1| peptide deformylase [Silicibacter sp. TrichCH4B] gi|259346903|gb|EEW58717.1| peptide deformylase [Silicibacter sp. TrichCH4B] Length = 169 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 64/147 (43%), Positives = 85/147 (57%), Gaps = 1/147 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V +PDP L + P+ + D+ LI NMLE MY G GLAA Q+GVL RL V+D+ Sbjct: 5 PIVKWPDPRLTAICAPVAE-GEDLSGLIANMLETMYDAPGRGLAAPQVGVLKRLFVMDVD 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +NP+V +NP I+ + + + +EGCLSIPD V R I VR+ D Sbjct: 64 WKDGARNPVVMVNPDILWRATEIAEGEEGCLSIPDVTTPVTRPTEIRVRWYDAKNTVNEQ 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 DG A C+QHE DHL+G + DHLS Sbjct: 124 CFDGFAARCIQHEYDHLDGRVTFDHLS 150 >gi|149922552|ref|ZP_01910982.1| peptide deformylase [Plesiocystis pacifica SIR-1] gi|149816579|gb|EDM76074.1| peptide deformylase [Plesiocystis pacifica SIR-1] Length = 177 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 96/162 (59%), Gaps = 2/162 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDP LR + + +N +I +L+ +M + MY+ + G+AA+Q+G L R+ +ID + Sbjct: 6 IVKYPDPRLREDTFDVADVNDEIRSLVRDMTDTMYALNAAGIAAIQVGRLERIFLIDGKV 65 Query: 66 HAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +N P+VFINP+++ V +EGCLS PD DVKR + VR +D N + Sbjct: 66 AGGDENSDPLVFINPEVVETGKGQVVAEEGCLSFPDVFVDVKRPRWAKVRALDVNGESFE 125 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + D L LQHE DHL G L ID + +K++MI +KM + Sbjct: 126 VDGDELFGRALQHEHDHLTGKLMIDLVGMVKKEMIKRKMKRW 167 >gi|94268712|ref|ZP_01291263.1| Peptide deformylase [delta proteobacterium MLMS-1] gi|93451495|gb|EAT02324.1| Peptide deformylase [delta proteobacterium MLMS-1] Length = 259 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 19/183 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP+ L+ +RP+ + + + L+ +M+ M+ G+GLAA Q+GV ++VV Sbjct: 72 MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131 Query: 61 I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 I D +D A +NP +V INP+++ + V +EGCLS+ DY + Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 VKR + V +D + Q I A+G A LQHE+DHL G LFID LS LKR + KK+ Sbjct: 191 KVKRYTRVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250 Query: 163 SKL 165 K+ Sbjct: 251 KKI 253 >gi|78183988|ref|YP_376423.1| peptide deformylase [Synechococcus sp. CC9902] gi|123743565|sp|Q3AZU8|DEF_SYNS9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78168282|gb|ABB25379.1| peptide deformylase [Synechococcus sp. CC9902] Length = 201 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 85/138 (61%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR+ ++ I K+N + L +ML MY+ GIGLAA Q+ V +L+VIDL P+ Sbjct: 41 LRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDLDLENAATPPL 100 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V INP+I S Y+EGCLSIP DV R I + Y D + + + ADGL+A C Sbjct: 101 VLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRKMKADGLMARC 160 Query: 134 LQHELDHLNGILFIDHLS 151 +QHE+DHLNG+LF+D ++ Sbjct: 161 IQHEMDHLNGVLFVDRVT 178 >gi|148266395|ref|YP_001233101.1| peptide deformylase [Geobacter uraniireducens Rf4] gi|146399895|gb|ABQ28528.1| peptide deformylase [Geobacter uraniireducens Rf4] Length = 168 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 105/169 (62%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + ++++P PIL+++ P+ I+ I L+ ++L+ M++ G +G+AA QIGV R+ Sbjct: 1 MPVQKILLYPHPILKKMCHPVAAIDRSITGLLQDLLDTMHAGPGSVGVAAPQIGVTLRVC 60 Query: 60 VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ + K + INP+I T ++ +EGC+S+PDY DV+R+ IT+R+M Sbjct: 61 VVDVSASRNGKENNHGLLQMINPEI-TKRQGAAIMREGCMSVPDYTGDVERATEITIRFM 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + H I A G A +QHE+DHL+G+LF+D ++ LK + +K K Sbjct: 120 DGDGIHHEIEASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKSYK 168 >gi|221194831|ref|ZP_03567888.1| peptide deformylase [Atopobium rimae ATCC 49626] gi|221185735|gb|EEE18125.1| peptide deformylase [Atopobium rimae ATCC 49626] Length = 183 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 64/151 (42%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PD L I +I +I ++ ML+ MY+TDG+GLAA QIG+L R+VVID+ Sbjct: 7 IVLWPDERLTDTCEEISEITDEIRDIAKRMLQDMYATDGVGLAAPQIGILKRMVVIDVDY 66 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +KNP V INP++IT + Y EGCLS P V R + + V + + Sbjct: 67 PDGQKNPFVLINPEVITADGEPRTYNEGCLSFPGITVPVTRPSHVVVHAQNLDGDLMQYE 126 Query: 126 ADG-LLATCLQHELDHLNGILFIDHLSRLKR 155 A+G L A CLQHE+DH+NGI DHL R Sbjct: 127 AEGDLFAVCLQHEIDHINGITMPDHLGPTAR 157 >gi|217034160|ref|ZP_03439580.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10] gi|216943444|gb|EEC22900.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10] gi|317182103|dbj|BAJ59887.1| peptide deformylase [Helicobacter pylori F57] Length = 175 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|154149172|ref|YP_001405640.1| peptide deformylase [Campylobacter hominis ATCC BAA-381] gi|153805181|gb|ABS52188.1| peptide deformylase [Campylobacter hominis ATCC BAA-381] Length = 171 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 99/162 (61%), Gaps = 4/162 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 ++ +P+ L + S+ +EK + ++ +D+M E M S GIGLAA+Q+G R +VI+L Sbjct: 5 ILTYPNKKLYQKSKKVEKFDDELGKFLDDMYETMISKKGIGLAAIQVGRPIRAIVINLVD 64 Query: 64 -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++N + INP+I+T + +YQEGCLS+P Y DVKR+ F+ + + + + + Sbjct: 65 ENDEQKKENLLEIINPEILTQEGEI-IYQEGCLSVPGYYEDVKRAEFVKLGFQNRFGETK 123 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + LLA C+QHE+DHL+G LFI+ + KR K+ K Sbjct: 124 EMEVQELLAVCIQHEIDHLDGHLFIEKIGYNKRKKFDKEFKK 165 >gi|194477103|ref|YP_002049282.1| peptide deformylase [Paulinella chromatophora] gi|171192110|gb|ACB43072.1| peptide deformylase [Paulinella chromatophora] Length = 201 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 96/155 (61%), Gaps = 3/155 (1%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR ++ I +IN ++ ++ +ML MY+ GIGLAA Q+G+ +L+VID+ P+ Sbjct: 41 LRTSAKRIMRINEEVRDIARDMLRSMYAAKGIGLAAPQVGINKQLIVIDIDLENSTTPPI 100 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 + INP+II + + Y+EGCLSIP DV R + I V + D + + DGLLA C Sbjct: 101 ILINPEIIASNASLNTYEEGCLSIPGVYLDVVRPSIIEVSFRDEQDFPRCLKTDGLLARC 160 Query: 134 LQHELDHLNGILFIDHL---SRLKRDMITKKMSKL 165 +QHE+DHL G+LF+D + SRL+ +++ + K+ Sbjct: 161 IQHEMDHLKGVLFVDRVKDESRLEEELVKNNLRKV 195 >gi|116071395|ref|ZP_01468664.1| peptide deformylase [Synechococcus sp. BL107] gi|116066800|gb|EAU72557.1| peptide deformylase [Synechococcus sp. BL107] Length = 201 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 85/138 (61%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR+ ++ I K+N + L +ML MY+ GIGLAA Q+ V +L+VIDL P+ Sbjct: 41 LRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDLDLENAATPPL 100 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V INP+I S Y+EGCLSIP DV R I + Y D + + + ADGL+A C Sbjct: 101 VLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRKMKADGLMARC 160 Query: 134 LQHELDHLNGILFIDHLS 151 +QHE+DHLNG+LF+D ++ Sbjct: 161 IQHEMDHLNGVLFVDRVT 178 >gi|227539328|ref|ZP_03969377.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300] gi|227241010|gb|EEI91025.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300] Length = 192 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+LR+ ++ I++ +I LI NM + MY+ G+GLAA QIG+ R+ VI Sbjct: 1 MKLPIVAYGDPVLRKKTQEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLAIRVFVI 60 Query: 62 DL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D +D + + VFINP I+ + + + EGCLSIPD +V R A + + Sbjct: 61 DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 Y+D N + I GL A +QHE DHL G LF D L LK+ M+ K+ Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKL 169 >gi|312143913|ref|YP_003995359.1| peptide deformylase [Halanaerobium sp. 'sapolanicus'] gi|311904564|gb|ADQ15005.1| peptide deformylase [Halanaerobium sp. 'sapolanicus'] Length = 150 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 91/143 (63%), Gaps = 5/143 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR ++ ++KI + LIDNM E MY+ +G+GLAA Q+G+L R+ VID+ + Sbjct: 11 DPVLRSKAKKVDKITPKTIQLIDNMFETMYAEEGVGLAAPQVGILKRIAVIDIGEG---- 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 N +V INP+II + + +EGCLSIP +V RS I V ++ + + I A+G Sbjct: 67 NKIVLINPEIIEENGKM-IMEEGCLSIPGRTGEVIRSKEIKVSSLNRDGEEIEIIAEGFE 125 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A +QHE+DHL+G+LFID + L Sbjct: 126 ARAIQHEIDHLDGVLFIDKMVEL 148 >gi|260072680|gb|ACX30577.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster bacterium] Length = 163 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 96/156 (61%), Gaps = 20/156 (12%) Query: 31 LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--------AHRKN----------- 71 L+ NM E MY+ DGIGLAA QI ++VV+D+ D +RKN Sbjct: 8 LVKNMFETMYAEDGIGLAATQINQHLQIVVMDVPDSQDDYELLLKNRKNDSDKETNIQHH 67 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P+ FINPKI T S + EGCLS+P ++A+V+RS IT+ ++ + ++A LLA Sbjct: 68 PLCFINPKITTISG-HEKHIEGCLSVPGFQAEVERSNQITIEALNEQGESFTLHASNLLA 126 Query: 132 TCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 C+QHELDHL GILF+D+LS+LK+ + +K K+++ Sbjct: 127 VCIQHELDHLKGILFVDYLSKLKQKRLLEKTKKVIK 162 >gi|325955519|ref|YP_004239179.1| peptide deformylase [Weeksella virosa DSM 16922] gi|323438137|gb|ADX68601.1| Peptide deformylase [Weeksella virosa DSM 16922] Length = 190 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 100/175 (57%), Gaps = 13/175 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ + DPILR+ + IE+ + LI+NM + MY ++G+GLAA QIG R+ V+D + Sbjct: 4 PIIAYGDPILRKKTALIEQDYPHLTELIENMFDTMYDSNGVGLAAPQIGKSIRMFVVDCR 63 Query: 65 DHAH-----------RKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A +FINPK I TF DD+ + EGCLSIP+ DV R IT+ Sbjct: 64 PFAEDEDNDEEKETLENFKKIFINPKKIETFGDDWK-FTEGCLSIPNIHEDVTRPDGITL 122 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y+D N GL A +QHE DHL+G LFID+LS K+ +I+ K+ + + Sbjct: 123 TYLDENFVEHTESFTGLPARVIQHEYDHLDGKLFIDYLSSFKKKLISNKLKNISK 177 >gi|149200572|ref|ZP_01877580.1| peptide deformylase [Lentisphaera araneosa HTCC2155] gi|149136344|gb|EDM24789.1| peptide deformylase [Lentisphaera araneosa HTCC2155] Length = 197 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 15/170 (8%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID--LQDH 66 F +P+LR+V+ PI +IN +I L++ M++ MY +GIGLAA Q+G R+ VID +D Sbjct: 13 FGNPVLRKVAEPISEINDEIRELVEEMVDTMYEENGIGLAAPQVGRSLRVFVIDTHFEDE 72 Query: 67 AHR---------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + K P+ INP+II+ S + ++EGCLSIP A V R + I ++ Sbjct: 73 TYGSDGEKLLCPKMPLALINPEIISTSGEDISFEEGCLSIPQINAAVVRPSNIVLKAQ-- 130 Query: 118 NAQHQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + +II AD GL + C+QHE+DHL+G+LF D + ++ KK+ +L Sbjct: 131 TLEGEIIEADFGGLTSRCMQHEIDHLDGVLFTDKAEKDDLKLVAKKLEQL 180 >gi|33519686|ref|NP_878518.1| peptide deformylase [Candidatus Blochmannia floridanus] gi|39930852|sp|Q7VQC0|DEF_BLOFL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33517349|emb|CAD83734.1| polypeptide deformylase [Candidatus Blochmannia floridanus] Length = 175 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PD LR+++R + I+ D +I +M E MY GIGLAA Q+ + +++VIDL + Sbjct: 6 MLYYPDQRLRKIARSVSIISHDTKKIISDMFETMYFQQGIGLAATQVDIHQKIIVIDLNN 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +VFINP II + EGCLSIP RA V RS I V+ +D N + + Sbjct: 66 NIQKR--LVFINPCIIKKIGTITHIIEGCLSIPKIRASVPRSQNIIVQSLDENGNNFEME 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LL+ C+QHE+DHL G LFID+LS K I KK++K Sbjct: 124 ATDLLSVCIQHEIDHLLGKLFIDYLSPFKIQRIHKKINKW 163 >gi|308184577|ref|YP_003928710.1| peptide deformylase [Helicobacter pylori SJM180] gi|308060497|gb|ADO02393.1| peptide deformylase [Helicobacter pylori SJM180] Length = 174 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIEAGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|85700143|gb|ABC74521.1| polypeptide deformylase [Helicobacter pylori] gi|85700145|gb|ABC74522.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|298207815|ref|YP_003715994.1| peptide deformylase [Croceibacter atlanticus HTCC2559] gi|83850453|gb|EAP88321.1| peptide deformylase [Croceibacter atlanticus HTCC2559] Length = 196 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 69/175 (39%), Positives = 97/175 (55%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + +P+L++ ++ I K + LI+NM E MY G+GLAA Q+G+ RL VID Sbjct: 4 PIVAYGNPVLKKKAKDITKDYPKLDELIENMWETMYGAHGVGLAAPQVGLPIRLFVIDPS 63 Query: 65 DHA--------HRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A RK +FINP I + D + EGCLSIPD R DV R IT+ Sbjct: 64 PFADDEELTEEERKQLTGLKKLFINPVITEETGDEWAFSEGCLSIPDVREDVFRQPDITI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y+D N + G+ A +QHE DH+ GILF D LS LK+ +I K++ + + Sbjct: 124 EYVDENFKAHTETYTGIAARVIQHEYDHIEGILFTDKLSSLKKRLIKGKLNNISK 178 >gi|302335855|ref|YP_003801062.1| peptide deformylase [Olsenella uli DSM 7084] gi|301319695|gb|ADK68182.1| peptide deformylase [Olsenella uli DSM 7084] Length = 180 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 92/153 (60%), Gaps = 1/153 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +V PD LR PIEKI++ + L MLE MY+T+G+GLAA Q+G L +LVVID+ Sbjct: 5 EEIVTAPDERLRTECAPIEKIDNKVRLLAKRMLEDMYATEGVGLAAPQVGELVQLVVIDV 64 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +++P V INP+++ D V EGCLS P V R + + V +D + Sbjct: 65 DYADGKRSPYVLINPRVVVADGDEVVGSEGCLSFPGITVQVSRPSHVVVEALDLDGDLMR 124 Query: 124 IYA-DGLLATCLQHELDHLNGILFIDHLSRLKR 155 A + LLA CLQHE+DHL+GI +DHLS +R Sbjct: 125 YEARNNLLAVCLQHEIDHLHGITMLDHLSPARR 157 >gi|313674138|ref|YP_004052134.1| peptide deformylase [Marivirga tractuosa DSM 4126] gi|312940836|gb|ADR20026.1| peptide deformylase [Marivirga tractuosa DSM 4126] Length = 185 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + P+L+ + I+K D+ L+D+M E MY+ +G+GLAA QIG RL VID Sbjct: 4 PIVAYGHPVLKTKGKDIDKGEIDVKTLVDDMFETMYNANGVGLAAPQIGKSLRLFVIDTD 63 Query: 65 ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + K FINP+I+ + ++EGCLSIP+ R DV R I ++Y D N Sbjct: 64 PIDDEEDQPKVKQAFINPQILEEEGEEWAFEEGCLSIPNIREDVNRKPTIRIKYFDENWN 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DG +A +QHE DH+ GILF DH+S K+ ++ K++ + + + Sbjct: 124 EHEKEYDGFVARVIQHEYDHIEGILFTDHVSAFKKRILKGKLANISKGK 172 >gi|212703762|ref|ZP_03311890.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098] gi|212672730|gb|EEB33213.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098] Length = 170 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 97/165 (58%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P L+ P+ +I +I L +MLE MY G+GLAA Q+G R++V+D Sbjct: 5 IVTYPAASLKEKCVPVTEITDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVMDPAA 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQII 124 K P V INP++ + QEGCLS+P +YRADV+R+ + +RYMD + +I+ Sbjct: 65 QDEEKQPRVVINPELTLSEETVLSRQEGCLSVPLNYRADVQRAERVHLRYMDLDG--KIV 122 Query: 125 YAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D G A +QHE DHL+G LFID + RL+R + ++ K ++ Sbjct: 123 EEDLEGFAAIVIQHEADHLDGTLFIDRIGRLRRSLYDTRVKKWLK 167 >gi|289578510|ref|YP_003477137.1| peptide deformylase [Thermoanaerobacter italicus Ab9] gi|289528223|gb|ADD02575.1| peptide deformylase [Thermoanaerobacter italicus Ab9] Length = 159 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 93/143 (65%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++P+ +INS ++ ++D+M++ MY +G+GLAA Q+G+L RL+VID+ + Sbjct: 11 DEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIVIDIGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ + + V EGCLSIP +VKR + VRY+D + + I + LL Sbjct: 66 GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVRYLDREGKEREIEGEDLL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A L HE+DHLNG+LFID R Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147 >gi|157737933|ref|YP_001490617.1| peptide deformylase [Arcobacter butzleri RM4018] gi|157699787|gb|ABV67947.1| polypeptide deformylase [Arcobacter butzleri RM4018] Length = 171 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 104/164 (63%), Gaps = 4/164 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +P+ +LR S+ +EK ++++ L+D+M E M + +G+GLAA+Q+ V ++VI+L Sbjct: 3 REVITYPNKLLRLKSKDVEKFDNELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVINL 62 Query: 64 --QDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ KN ++ INP +IT D V+ EGCLS+P + DV R+ I V Y + + Sbjct: 63 PNEEDIQDKNDLIEAINP-VITHKDGTQVFTEGCLSVPGFSEDVTRAEHIIVEYFNRFGE 121 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + ++G LA QHE++HL+G LFI++LS +KR K+ K Sbjct: 122 KQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKK 165 >gi|67923097|ref|ZP_00516588.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] gi|67855050|gb|EAM50318.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] Length = 188 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 59/140 (42%), Positives = 86/140 (61%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D LR+ ++ I K++ I L ML+ MYS+ GIGLAA Q+ + +L+V+D + Sbjct: 24 DRALRQPAKRIAKVDDSIRKLAKEMLQTMYSSQGIGLAAPQVAIQKQLIVVDCEPDNPAN 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +P++ INPKI FS + V +EGCLSIP DV R I V + D + + I A LL Sbjct: 84 SPLILINPKITVFSKELCVVEEGCLSIPGVYLDVTRPKAIEVSFKDEQGKPRKIQATELL 143 Query: 131 ATCLQHELDHLNGILFIDHL 150 A +QHE+DHLNG++F+D + Sbjct: 144 ARVIQHEMDHLNGVMFVDRV 163 >gi|237753393|ref|ZP_04583873.1| polypeptide deformylase pdf formylmethioninedeformylase [Helicobacter winghamensis ATCC BAA-430] gi|229375660|gb|EEO25751.1| polypeptide deformylase pdf formylmethioninedeformylase [Helicobacter winghamensis ATCC BAA-430] Length = 168 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P+P+LR++S+ +E + + L+D M EVM + +G+G++A+Q+ R ++I + D Sbjct: 4 VITYPNPLLRQISKSVEVFDKGLHTLLDEMYEVMLAKNGVGISAIQVAKPIRALLICIPD 63 Query: 66 ---HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + H+++ + INPKII D ++ EGCLS+P++ ++KR++ I + Y D Q Sbjct: 64 EDGNQHKEDLLEVINPKIIE-RDGEILFNEGCLSVPEFYEEIKRASNIKIAYQDRYGNPQ 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A LA QHE+DHLNG+LFID LS +KR K++ + Sbjct: 123 EIVAQDYLAVAFQHEIDHLNGVLFIDKLSIVKRKKFEKELKQ 164 >gi|99082419|ref|YP_614573.1| peptide deformylase [Ruegeria sp. TM1040] gi|99038699|gb|ABF65311.1| Peptide deformylase [Ruegeria sp. TM1040] Length = 169 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V +PDP L P+ D+ LID++LE MY+ G GLAA Q+GVL R+ V+D+ Sbjct: 5 PIVQWPDPRLSTACAPV-GAAEDLGTLIDDVLETMYAAPGRGLAAPQVGVLKRVFVMDVD 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +NP+V I P+++ SDD ++ +E CLSIP + R I +R+ D + Q Sbjct: 64 WKEGPRNPVVMIYPEVLWRSDDTTLAKEACLSIPGLSTRITRPTKIRIRWQDADRAAQEQ 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 DG A C+QHE DHL+G + DH S +R ++ + Sbjct: 124 TFDGFAARCIQHEYDHLDGRVTFDHFSSEERRLLEAQ 160 >gi|89895440|ref|YP_518927.1| hypothetical protein DSY2694 [Desulfitobacterium hafniense Y51] gi|123091730|sp|Q24U09|DEF_DESHY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|89334888|dbj|BAE84483.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 150 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 90/143 (62%), Gaps = 6/143 (4%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +LR + P+++I +I L+DNML+ +Y +G+GLAA Q+GV R+VVID+ + P Sbjct: 13 VLREKAVPVKEITPNIEKLLDNMLDTLYDANGVGLAAPQVGVSKRVVVIDVGE-----GP 67 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + INP II + + EGCLSIP V R+A + V ++ + Q+I +GLLA Sbjct: 68 IELINPVIIAKEGE-DLDDEGCLSIPGITGQVARAAKVKVEALNRQGELQVIEGEGLLAR 126 Query: 133 CLQHELDHLNGILFIDHLSRLKR 155 CLQHE+DHL GILF+D + +R Sbjct: 127 CLQHEIDHLEGILFVDKAKKTQR 149 >gi|304440681|ref|ZP_07400565.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370868|gb|EFM24490.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 160 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 62/138 (44%), Positives = 85/138 (61%), Gaps = 5/138 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR++S+ + IN + LI +M E M ++G+GLAA Q+G+L R++ +D QD Sbjct: 11 DPILRKISKEVNDINDRMKTLISDMFETMDYSNGVGLAAPQVGILRRIITLDDQDGLR-- 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 FINPKII D V EGCLS+P + V R+ I V YMD N + + + A+G Sbjct: 69 --GAFINPKIIE-KDGEQVGPEGCLSVPGKQGTVNRANHIVVTYMDENGEEKTLEAEGFT 125 Query: 131 ATCLQHELDHLNGILFID 148 A QHE+DHLNGIL+ D Sbjct: 126 ARIFQHEIDHLNGILYTD 143 >gi|78778228|ref|YP_394543.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251] gi|78498768|gb|ABB45308.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251] Length = 178 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 63/167 (37%), Positives = 102/167 (61%), Gaps = 4/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K +V +PD L+ S+ +EK + ++ L++ M M ++GIGLAA+Q+G +++++ Sbjct: 1 MKLTIVEYPDKRLKEKSKIVEKFDEELHKLLEAMYASMIESNGIGLAAIQVGYAKQVLLL 60 Query: 62 DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D R + + INP IIT S+ ++YQEGCLS+P + DV R + V Y D Sbjct: 61 NIPDDNDEQSRDSLIEMINP-IITQSEGETIYQEGCLSVPSFYEDVSRFERVCVNYQDRE 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + I A GLL+ +QHE+DHL+G+LFID LS +R K+ K+ Sbjct: 120 GNTKTIEATGLLSVAIQHEIDHLHGVLFIDKLSYSRRKKFEKEYKKV 166 >gi|315586543|gb|ADU40924.1| peptide deformylase [Helicobacter pylori 35A] Length = 175 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|27904914|ref|NP_778040.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611708|sp|P59493|DEF_BUCBP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|27904312|gb|AAO27145.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 160 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 67/154 (43%), Positives = 99/154 (64%), Gaps = 5/154 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHA 67 +PD LR +++PI KI++ I N+I NM + MY +GIGLAA Q+ + +++VID +++ Sbjct: 9 YPDDRLRIIAKPISKIDTKIHNIIINMFDTMYYENGIGLAATQVNIPLQIIVIDKIEELN 68 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 H P+V INPKI S S+ QEGCLSIP+Y+A++ RS ITV ++ + + Sbjct: 69 H---PLVLINPKITKRSGLTSI-QEGCLSIPNYQAEISRSKKITVTALNYFGKRIKLKTS 124 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 L+ C+QHE+DHL G L ID+LS L + KK Sbjct: 125 STLSICIQHEIDHLIGKLLIDYLSNLTNLKLLKK 158 >gi|225181326|ref|ZP_03734770.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1] gi|225167907|gb|EEG76714.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1] Length = 154 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 89/143 (62%), Gaps = 4/143 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR ++ + +I + L+++M+E MY +GIGLAA Q+G+ R++VID+QD Sbjct: 11 DPVLREKAKEVPEITPQVKKLLEDMVETMYDAEGIGLAAPQVGISKRIIVIDVQDET--- 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+II+ + EGCLS P +V+R +TVR D + I A GLL Sbjct: 68 GVLKLINPEIIS-GEGKETSVEGCLSFPGVAGEVERDESVTVRAQDPDGNTVEICASGLL 126 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A QHE+DHL+GILF+D ++RL Sbjct: 127 ARAFQHEIDHLDGILFVDKVTRL 149 >gi|85700139|gb|ABC74519.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 101/159 (63%), Gaps = 4/159 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A LLA +QHE+DHLNG+LF+D LS LKR K++ + Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKE 166 >gi|227500109|ref|ZP_03930180.1| peptide deformylase [Anaerococcus tetradius ATCC 35098] gi|227217824|gb|EEI83121.1| peptide deformylase [Anaerococcus tetradius ATCC 35098] Length = 158 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 89/138 (64%), Gaps = 3/138 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR++SR + +I I L+D+M + MY DG+GLAA Q+G+L R++V+D D + Sbjct: 11 DPILRKISRNVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIVVDPHDDS--T 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP+II D V EGCLSIP++ A VKR + V+Y++ N + +I A G Sbjct: 69 GLIKLVNPEIIE-EDGEQVGIEGCLSIPNFNATVKRPEHVKVKYLNENGEEKIWDAHGFP 127 Query: 131 ATCLQHELDHLNGILFID 148 A L HE+DHLNGILF D Sbjct: 128 AEILSHEIDHLNGILFRD 145 >gi|317012603|gb|ADU83211.1| peptide deformylase [Helicobacter pylori Lithuania75] Length = 174 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPKEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 AIELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|218248691|ref|YP_002374062.1| peptide deformylase [Cyanothece sp. PCC 8801] gi|257061756|ref|YP_003139644.1| peptide deformylase [Cyanothece sp. PCC 8802] gi|218169169|gb|ACK67906.1| peptide deformylase [Cyanothece sp. PCC 8801] gi|256591922|gb|ACV02809.1| peptide deformylase [Cyanothece sp. PCC 8802] Length = 187 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 59/141 (41%), Positives = 89/141 (63%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I K++ I L ML+ MYS++GIGLAA Q+GV +L+V+D + Sbjct: 24 DRVLRQPAKRIAKVDDTIRQLAKEMLQTMYSSNGIGLAAPQVGVHKQLIVVDCDPNDPAN 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+I FS + V +EGCLSIP DV R I V + D + + + A LL Sbjct: 84 QPIILINPQITRFSQELCVVEEGCLSIPGVYLDVTRPKAIEVSFRDEQGKPRKLQATDLL 143 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A +QHE+DHLNG++F+D ++ Sbjct: 144 ARVIQHEMDHLNGVMFVDRVN 164 >gi|20807950|ref|NP_623121.1| peptide deformylase [Thermoanaerobacter tengcongensis MB4] gi|23396539|sp|Q8R9T0|DEF_THETN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|20516520|gb|AAM24725.1| N-formylmethionyl-tRNA deformylase [Thermoanaerobacter tengcongensis MB4] Length = 159 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 92/143 (64%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR+ ++P+ +INS I+ ++++M E MY DG+GLAA Q+G+L RLVVID+ + Sbjct: 11 DPVLRKKAKPVTEINSHIITILEDMAETMYLNDGVGLAANQVGILRRLVVIDVGEGL--- 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ + + + EGCLSIP +VKR + VRY+D + I + LL Sbjct: 68 --LELINPEIV-YEEGEQIGPEGCLSIPGVFGEVKRPQKVKVRYLDREGNVKEIVGEDLL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A L HE+DHL G+LF+D + R Sbjct: 125 ARALCHEIDHLEGVLFVDKVIRF 147 >gi|310828897|ref|YP_003961254.1| peptide deformylase [Eubacterium limosum KIST612] gi|308740631|gb|ADO38291.1| peptide deformylase [Eubacterium limosum KIST612] Length = 146 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 6/140 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR+ +R I +IN I+ L +ML+ MY+ +G+GLAA Q+GVL +L+VID+ + Sbjct: 11 DPILRKKTREITEINDRIIELQKDMLDTMYAEEGVGLAAPQVGVLKQLIVIDIGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+ INP+I T + V +E CLS PD V+R F+TV Y D N + GL+ Sbjct: 66 GPVTLINPEI-TKQEGSVVEEEACLSFPDRSGKVERPEFVTVEYTDLNGDRYEMECQGLM 124 Query: 131 ATCLQHELDHLNGILFIDHL 150 A + HE+DHLNGI+F+D + Sbjct: 125 ARAVCHEVDHLNGIVFLDRV 144 >gi|303326112|ref|ZP_07356555.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3] gi|302864028|gb|EFL86959.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3] Length = 172 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 1/166 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDP L++ P+ ++ +I L +MLE MY+ G+GLAA Q+G R++V+D Sbjct: 5 IVTYPDPRLKQPCEPVTEVTDEIRKLAADMLETMYAAPGVGLAAPQVGRNIRMLVMDPAG 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQII 124 K P V INP + +D QEGCLS+P +YRADV R + + ++ D + Sbjct: 65 KDEDKQPRVLINPVLELSGEDVVSEQEGCLSVPLNYRADVPRKSRVLLKATDLDGNGIEE 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A +QHE DHL+GILFID +SRL+R + K+ K ++ ++ Sbjct: 125 DLTDFPAIIIQHEADHLDGILFIDKISRLRRTLYDSKVKKWLKRKN 170 >gi|78187332|ref|YP_375375.1| formylmethionine deformylase [Chlorobium luteolum DSM 273] gi|123730026|sp|Q3B2U9|DEF_PELLD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78167234|gb|ABB24332.1| peptide deformylase [Chlorobium luteolum DSM 273] Length = 190 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 100/160 (62%), Gaps = 3/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + D +L + ++P++ +++DI +LID+M E M + GIGLAA Q+G RL+V+D+ Sbjct: 4 PINTYSDEVLHQKAKPLKGVDADISSLIDSMFESMENASGIGLAAPQVGCSIRLLVLDVS 63 Query: 65 DHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 ++ PMV INP ++ ++ +EGCLS+P + DV R + IT++Y D N Q Sbjct: 64 CMKSYEDVPPMVVINPNVLAVRGK-NLMEEGCLSVPGVQGDVLRPSEITLKYRDRNFQEH 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 G+LA LQHE+DHLNG LF+D + + R I +++ Sbjct: 123 TEEFSGMLARVLQHEIDHLNGTLFVDRMEKRDRRRIQQEL 162 >gi|108563203|ref|YP_627519.1| peptide deformylase [Helicobacter pylori HPAG1] gi|123373755|sp|Q1CT77|DEF_HELPH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|107836976|gb|ABF84845.1| polypeptide deformylase [Helicobacter pylori HPAG1] Length = 174 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|300722039|ref|YP_003711319.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] gi|297628536|emb|CBJ89108.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] Length = 168 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/166 (42%), Positives = 99/166 (59%), Gaps = 5/166 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD LR+ + + + L+D+MLE MY+TD GIGLAA Q+G ++VIDL Sbjct: 6 ILTIPDERLRQKCVDVTDFDK-VQTLVDDMLETMYATDNGIGLAAPQVGRKEAVLVIDL- 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 R P V +NPKI+ + V QEGCLSIP Y ADV+R + V D I Sbjct: 64 -SPDRDKPTVLVNPKIVE-KERRVVNQEGCLSIPGYYADVERFEKVKVEAFDRQGNQTTI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++ L+ +QHE+DHLNG++FID+LS L+R M KK+ K + R+ Sbjct: 122 ESEDFLSIVMQHEIDHLNGVIFIDYLSPLRRKMALKKVQKYISNRN 167 >gi|208434704|ref|YP_002266370.1| polypeptide deformylase [Helicobacter pylori G27] gi|238058212|sp|B5Z7F5|DEF_HELPG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|208432633|gb|ACI27504.1| polypeptide deformylase [Helicobacter pylori G27] Length = 174 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|207091735|ref|ZP_03239522.1| peptide deformylase [Helicobacter pylori HPKX_438_AG0C1] Length = 175 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|261837976|gb|ACX97742.1| polypeptide deformylase [Helicobacter pylori 51] gi|317177377|dbj|BAJ55166.1| peptide deformylase [Helicobacter pylori F16] gi|317180556|dbj|BAJ58342.1| peptide deformylase [Helicobacter pylori F32] Length = 175 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +I+ Sbjct: 69 VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|33864860|ref|NP_896419.1| peptide deformylase [Synechococcus sp. WH 8102] gi|39930836|sp|Q7U9D4|DEF_SYNPX RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33632383|emb|CAE06839.1| putative formylmethionine deformylase [Synechococcus sp. WH 8102] Length = 201 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 60/139 (43%), Positives = 85/139 (61%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +LR+ +R I K+ L +ML MY+ GIGLAA Q+G+ +L+VIDL P Sbjct: 40 VLRQSARRIGKVTEQTRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPP 99 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 +V INP+I S Y+EGCLSIP DV R I + + D + + + ADGL+A Sbjct: 100 LVLINPEISAASASIDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMAR 159 Query: 133 CLQHELDHLNGILFIDHLS 151 C+QHE+DHLNG+LF+D ++ Sbjct: 160 CIQHEMDHLNGVLFVDRVT 178 >gi|227824654|ref|ZP_03989486.1| peptide deformylase [Acidaminococcus sp. D21] gi|226905153|gb|EEH91071.1| peptide deformylase [Acidaminococcus sp. D21] Length = 164 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 4/145 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V PILR + + + + + + M E MY+ +G GLAA QIG+ R++VID Sbjct: 13 PIVKVGAPILREKAEAVTRFDKKLEKTLKAMAESMYANNGCGLAAPQIGLSKRMIVIDAD 72 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D A + F+NP + F + + EGCLS+ DY +VKR+A +TVR+ D H + Sbjct: 73 DGAGIRE---FVNPVLSEFKGE-EIDTEGCLSVDDYEGEVKRAAEVTVRFQDRKGGHWRL 128 Query: 125 YADGLLATCLQHELDHLNGILFIDH 149 A GLLA LQHE DHL+GILFID Sbjct: 129 TASGLLARALQHECDHLDGILFIDR 153 >gi|56477100|ref|YP_158689.1| peptide deformylase [Aromatoleum aromaticum EbN1] gi|56313143|emb|CAI07788.1| N-formylmethionyl-tRNA deformylase 1 [Aromatoleum aromaticum EbN1] Length = 167 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 3/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L + + P+ ++ I L+ +M E MY G+GLAA Q+ V R+VVID+ Sbjct: 5 PILRYPDPRLHKHAAPVAVVDDSIRQLVRDMAETMYEAPGVGLAATQVDVHKRVVVIDVS 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + R FINP+I+ S + + +EGCLS+P V R+ + VR +D + + Sbjct: 65 ED--RSTLRAFINPEILEKSGEQTC-EEGCLSVPGVYEKVTRAERVKVRALDERGEPFEL 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA C+QHE+DHL+G +F+++LS LK I +++K Sbjct: 122 EAEGLLAVCIQHEIDHLDGRVFVEYLSPLKLGRIKARLAK 161 >gi|15639744|ref|NP_219194.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025982|ref|YP_001933754.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14] gi|6014952|sp|O83738|DEF_TREPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238689341|sp|B2S3Z6|DEF_TREPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|3323063|gb|AAC65724.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018557|gb|ACD71175.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14] gi|291060119|gb|ADD72854.1| peptide deformylase [Treponema pallidum subsp. pallidum str. Chicago] Length = 162 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 L +P L VS P+ +++ + I M VM G+GLAA Q+G R+ V+D++ Sbjct: 3 LKFLGEPCLTTVSEPVSEVDEQLRAFISGMFRVMRGAGGVGLAAPQVGRTVRVFVVDVEH 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H FINP+I S++ S Y+EGCLSIP V R ++V+Y+D N + + Sbjct: 63 HVR-----AFINPQITAASEEQSSYEEGCLSIPHIYERVLRPRRVSVQYLDENGKRCAVD 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADG+LA +QHE DHL+GILF+D + +RD ++ + L Sbjct: 118 ADGILARVIQHEYDHLDGILFLDRIDEKRRDDALRRYAAL 157 >gi|145220094|ref|YP_001130803.1| peptide deformylase [Prosthecochloris vibrioformis DSM 265] gi|189083076|sp|A4SFP2|DEF_PROVI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145206258|gb|ABP37301.1| peptide deformylase [Chlorobium phaeovibrioides DSM 265] Length = 190 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 3/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + D +L + ++P++ ++ + LID+M E M + GIGLAA Q+G RL+V+D+ Sbjct: 4 PITTYTDEVLHQTAKPLKGVDGAVEELIDSMFESMENASGIGLAAPQVGHSLRLLVLDIS 63 Query: 65 DHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 ++ PMV INP I++ ++ +EGCLS+P + DV+R + IT++Y D N Q Sbjct: 64 CMKSYEDVAPMVVINPHILSVKGK-NLMEEGCLSVPGVQGDVQRPSSITLKYRDRNFLEQ 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+LA LQHE+DHL+G LFID + + R I K++ + + Sbjct: 123 TEEFSGMLARVLQHEIDHLSGTLFIDRMEKRDRRKIQKELDDIAK 167 >gi|95931365|ref|ZP_01314077.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] gi|95132581|gb|EAT14268.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] Length = 166 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 100/166 (60%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M + ++++PDP L+ V RP E ++D L+ ++++ MY S +G+AA QIG+ R+ Sbjct: 1 MAVREVLVYPDPRLKEVCRPAEVGHADTAALVQDLIDTMYDSGHSVGIAAPQIGICQRVA 60 Query: 60 VIDLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ + H + +NP II S V +EGC+S+PDY +V+R+ I V++ Sbjct: 61 VVDVSNSKLGKKHNHGLVTMVNPTIIE-STGSKVMREGCMSVPDYTGNVERAREIVVQFY 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 D Q Q++ G A +QHELDHL+G+LF+D +S K D+ +K Sbjct: 120 DQEGQDQVMRCKGFEAVAIQHELDHLDGLLFLDRVSNPKADIFKRK 165 >gi|217032886|ref|ZP_03438363.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128] gi|298736496|ref|YP_003729022.1| peptide deformylase [Helicobacter pylori B8] gi|216945380|gb|EEC24048.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128] gi|298355686|emb|CBI66558.1| peptide deformylase [Helicobacter pylori B8] Length = 174 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKWIETGGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|315646177|ref|ZP_07899297.1| peptide deformylase [Paenibacillus vortex V453] gi|315278376|gb|EFU41692.1| peptide deformylase [Paenibacillus vortex V453] Length = 164 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 4/148 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V PD +L + ++ + KI ++ L+D+M + MY DG+GLAA Q+G+L RL+VID D Sbjct: 6 IVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDADGVGLAAPQVGILKRLIVIDAGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + INP+I+ S+ EGCLSIP + DV+R+ +TV+ +D I+ Sbjct: 66 E---HGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGNELIVT 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153 GLLA QHE+DHLNG+LF + R+ Sbjct: 122 GTGLLARAFQHEIDHLNGVLFTEIADRV 149 >gi|254460696|ref|ZP_05074112.1| peptide deformylase [Rhodobacterales bacterium HTCC2083] gi|206677285|gb|EDZ41772.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083] Length = 166 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 87/162 (53%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PD L+ +E I +I L+ +M E MY+ G GLAA Q+GV+ RL V+D Sbjct: 5 PIITWPDVRLQTECAAVEAIGPEIEQLVGDMFETMYTAPGRGLAASQVGVMRRLFVMDAT 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 NP+V INP I+ SD S +E CLSI ADV R I + Y N + Sbjct: 65 WKEGDMNPLVCINPSIVPLSDARSTNEEACLSIVGVSADVSRPNEIELSYTGLNGKRVTA 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +G A C QHE+DHL+G + DHL +R + K +++ Sbjct: 125 VIEGFAAVCAQHEMDHLDGRVIFDHLGAPERAALEAKYKEII 166 >gi|297379991|gb|ADI34878.1| peptide deformylase [Helicobacter pylori v225d] Length = 175 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 101/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+ +I+L Sbjct: 9 YPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMFIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFFEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEMDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|262195424|ref|YP_003266633.1| peptide deformylase [Haliangium ochraceum DSM 14365] gi|262078771|gb|ACY14740.1| peptide deformylase [Haliangium ochraceum DSM 14365] Length = 175 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P+V++PD LR+ +R +E+++ + +L N+++ MYS +G+G+AAVQIG ++ +++ Sbjct: 5 PIVVWPDARLRQETRRVEQVDDAVRDLYRNLVDTMYSLNGLGIAAVQIGDPTQMFIVEPA 64 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 L P+ FINP+++ S+D +EGCLS P V R A VR + + + Sbjct: 65 LAGRDANDEPVAFINPEVVWTSEDSDKSEEGCLSFPGIYVQVDRPAKARVRALGIDGEIF 124 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A+GL A CL HE DHL G L +D + LKR MI +K+++ Sbjct: 125 EVEAEGLFARCLLHENDHLTGKLLVDFVGPLKRQMIRRKLNR 166 >gi|88802639|ref|ZP_01118166.1| peptide deformylase [Polaribacter irgensii 23-P] gi|88781497|gb|EAR12675.1| peptide deformylase [Polaribacter irgensii 23-P] Length = 196 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 86/159 (54%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ + DP+LR+VS I + D+ LI NM E MY+ G+GLAA QIG RL +ID Sbjct: 4 PIIAYGDPVLRKVSEDIPEDYPDLDKLIHNMRETMYNASGVGLAAPQIGKAIRLFLIDAS 63 Query: 65 DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + VFIN +II + V+ EGCLSIPD R DV R I + Sbjct: 64 PFAEDEELSEKDRNVLKTFNKVFINAQIIAEEGEEWVFNEGCLSIPDVREDVSRQPVIKI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +Y D N + +GL A QHE DH+ GILF D LS Sbjct: 124 KYQDENFKKHFETLEGLAARVFQHEYDHIEGILFTDKLS 162 >gi|29345830|ref|NP_809333.1| peptide deformylase [Bacteroides thetaiotaomicron VPI-5482] gi|253567816|ref|ZP_04845227.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6] gi|298384715|ref|ZP_06994275.1| peptide deformylase [Bacteroides sp. 1_1_14] gi|39930885|sp|Q8AAP4|DEF_BACTN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|29337723|gb|AAO75527.1| peptide deformylase(PDF) [Bacteroides thetaiotaomicron VPI-5482] gi|251841889|gb|EES69969.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6] gi|298262994|gb|EFI05858.1| peptide deformylase [Bacteroides sp. 1_1_14] Length = 184 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/168 (39%), Positives = 97/168 (57%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+V I L Sbjct: 4 PIYVYGQPVLRKVAEDITPEYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ K+ +INP II + +EGCLS+P VKR I V+YMD N Sbjct: 64 PLSEDYPEFKDFNKAYINPHIIEVGGEEVSMEEGCLSLPGIHESVKRGNKIRVKYMDENF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +FIDHLS L++ MI K++ +++ Sbjct: 124 VEHDEVVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIRGKLNTMLK 171 >gi|284054434|ref|ZP_06384644.1| peptide deformylase [Arthrospira platensis str. Paraca] gi|291565688|dbj|BAI87960.1| peptide deformylase [Arthrospira platensis NIES-39] Length = 187 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 64/150 (42%), Positives = 91/150 (60%), Gaps = 2/150 (1%) Query: 3 KKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 K PL I D +LR+ ++ + +I+ +I L+ ML+ MYS DGIGLAA Q+GV +++V Sbjct: 14 KTPLDIHYLGDRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIV 73 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + P+V INP I S + S +QEGCLSIP DV R + V + D N + Sbjct: 74 IDCEPDNAATPPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGR 133 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I A LL +QHE+DHL G+LF+D + Sbjct: 134 PRTILATELLCRAIQHEIDHLQGVLFVDRV 163 >gi|82701528|ref|YP_411094.1| peptide deformylase [Nitrosospira multiformis ATCC 25196] gi|82409593|gb|ABB73702.1| peptide deformylase [Nitrosospira multiformis ATCC 25196] Length = 191 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 97/156 (62%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L ++ P+ ++ +I L+ +M E MY+ G+GLAA Q+ V R++VID+ + Sbjct: 33 YPDERLHTIAAPVPEVTDEIRVLVQDMAETMYAAPGVGLAATQVDVHKRVIVIDVSNT-- 90 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +V INP+I T + S Y+EGCLS+P V R+A ITV ++ + + + ADG Sbjct: 91 HDQLLVLINPEITTHEGE-SDYEEGCLSVPGIFGKVPRAAQITVEALNKDGERFTLDADG 149 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++ SR+K+ I K K Sbjct: 150 LLAVCIQHEMDHLLGRVFVEYWSRMKQSRIQAKFRK 185 >gi|15965155|ref|NP_385508.1| peptide deformylase [Sinorhizobium meliloti 1021] gi|307309167|ref|ZP_07588838.1| peptide deformylase [Sinorhizobium meliloti BL225C] gi|23396568|sp|Q92QD0|DEFL_RHIME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|15074335|emb|CAC45981.1| Putative polypeptide deformylase [Sinorhizobium meliloti 1021] gi|306900313|gb|EFN30929.1| peptide deformylase [Sinorhizobium meliloti BL225C] Length = 172 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 95/165 (57%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP P+L + I + + + L D++++ M + GIG+ A IG+L RL V Sbjct: 1 MAVRPIIRFPSPLLTTSAERIGRFDGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I++ P F+NP+I+ S + + + EG +S+P +V+R + V + + + Sbjct: 61 IEVDPQT---GPRSFVNPEIVWQSSETAWHTEGSVSMPGVAEEVERPVRVRVSFQTLDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + A+GL+A CLQHE+D LNGI +I LSRLKR+ K+ K Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKF 162 >gi|224023749|ref|ZP_03642115.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM 18228] gi|224016971|gb|EEF74983.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM 18228] Length = 184 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 97/167 (58%), Gaps = 5/167 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA Q+G+ R+VV++L Sbjct: 4 PIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVVNLD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D K+ V+INP I+ D+ +EGCLS+P VKR I V Y+D N Sbjct: 64 VLSDDMPEFKDFKRVYINPHILETGDEMVSMEEGCLSLPGIHESVKRPDRIHVTYLDENM 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +G LA +QHE DHL+G +FIDHLS L++ MI K++ +V Sbjct: 124 TAHDEWVEGYLARVMQHEFDHLDGTMFIDHLSSLRKQMIRGKLNNMV 170 >gi|260062214|ref|YP_003195294.1| peptide deformylase [Robiginitalea biformata HTCC2501] gi|88783776|gb|EAR14947.1| peptide deformylase [Robiginitalea biformata HTCC2501] Length = 196 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 85/159 (53%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DP+LRR I ++ LI+NM E MY +G+GLAA Q+G RL ++D Sbjct: 4 PIVAYGDPVLRRKCEAIGPEYPELATLIENMWETMYQANGVGLAAPQVGRPIRLFLVDTS 63 Query: 65 DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A R VFIN ++ + + EGCLSIPD R DV R IT+ Sbjct: 64 PFAEDEDFSPEEQEKLRAFKRVFINAQMQEETGKKWAFNEGCLSIPDIREDVTRQDTITL 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 RY D + DGLLA +QHE DH+ GILF DH+S Sbjct: 124 RYQDAEFKEHTETFDGLLARVIQHEYDHIEGILFTDHIS 162 >gi|222099700|ref|YP_002534268.1| Peptide deformylase [Thermotoga neapolitana DSM 4359] gi|254767608|sp|B9K7G9|DEF_THENN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|221572090|gb|ACM22902.1| Peptide deformylase [Thermotoga neapolitana DSM 4359] Length = 164 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 92/155 (59%), Gaps = 5/155 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +F DP+LR+ ++P+ K + + I+ M+E MY DG+GLAA Q+G+ R V+D+ + Sbjct: 6 VFGDPVLRKRAKPVTKFDEALKRTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-- 63 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P+ INP+I+ S + + +EGCLS P+ +++RS + VRY + + + Sbjct: 64 ---GPVAVINPEILEASPETEIAEEGCLSFPEIFVEIERSKRVKVRYQNVRGEFVEEELE 120 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 G A QHE DHLNG+L ID + KR ++ K++ Sbjct: 121 GYPARVFQHEFDHLNGVLIIDRIKPAKRLLLRKRL 155 >gi|319955771|ref|YP_004167034.1| peptide deformylase [Nitratifractor salsuginis DSM 16511] gi|319418175|gb|ADV45285.1| peptide deformylase [Nitratifractor salsuginis DSM 16511] Length = 177 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 101/168 (60%), Gaps = 10/168 (5%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---- 61 +V++PD L+ +S+P+E+ + ++ L+D+M E M + +G+GLAA+Q+ V R ++I Sbjct: 5 IVVYPDKRLKEISQPVERFDEELHTLLDDMYETMIAKNGVGLAAIQVAVPVRALIINVPV 64 Query: 62 --DLQD---HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D +D ++N + INP +I ++ + YQEGCLS+P Y +V+R + + Y D Sbjct: 65 DTDSEDPRVQQPKENTLEVINP-VILDAEGKTRYQEGCLSVPGYFEEVERYKAVRIEYQD 123 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I+ D LA +QHE+DHL G LFI+ LS LKR K+ K Sbjct: 124 RYGEKHILEDDDFLAIAVQHEMDHLEGRLFIEKLSLLKRKKFEKEWKK 171 >gi|94266527|ref|ZP_01290215.1| Peptide deformylase [delta proteobacterium MLMS-1] gi|93452856|gb|EAT03376.1| Peptide deformylase [delta proteobacterium MLMS-1] Length = 259 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 19/183 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP+ L+ + P+ + + + L+ +M+ M+ G+GLAA Q+GV ++VV Sbjct: 72 MAIRPVVKFPEASLKSKAAPVTEFDDSLRALVADMIATMHDAPGVGLAAPQVGVPLQVVV 131 Query: 61 I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 I D +D A +NP +V INP+++ + V +EGCLS+ DY + Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 VKR A + V +D + Q I A+G A LQHE+DHL G LFID LS LKR + KK+ Sbjct: 191 KVKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250 Query: 163 SKL 165 K+ Sbjct: 251 KKI 253 >gi|157165463|ref|YP_001465989.1| peptide deformylase [Campylobacter concisus 13826] gi|112801795|gb|EAT99139.1| peptide deformylase [Campylobacter concisus 13826] Length = 172 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 92/150 (61%), Gaps = 4/150 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P+ L +S+ +E + + L+D+M E M + +GIGLAA+QIGV R+ +I+L + Sbjct: 8 YPNKKLYEISKEVEVFDEKLHKLLDDMYETMIAKEGIGLAAIQIGVAKRIFIINLANEEG 67 Query: 69 ---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++N + INPK + VYQEGCLS+P Y DVKRS + +++ D + Q + Sbjct: 68 VQDKENLIEIINPKF-ELREGECVYQEGCLSVPGYYEDVKRSEVVAIKFQDRFGKEQTLK 126 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 DGLLA +QHE DHL+G LFI+ + KR Sbjct: 127 TDGLLAIAIQHENDHLDGHLFIEKIGFNKR 156 >gi|219669870|ref|YP_002460305.1| peptide deformylase [Desulfitobacterium hafniense DCB-2] gi|254767579|sp|B8FS81|DEF_DESHD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219540130|gb|ACL21869.1| peptide deformylase [Desulfitobacterium hafniense DCB-2] Length = 150 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 89/143 (62%), Gaps = 6/143 (4%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +LR + P+++I +I L+DNML+ +Y +G+GLAA Q+GV R+VVID+ + P Sbjct: 13 VLREKAVPVKEITPNIAKLLDNMLDTLYDANGVGLAAPQVGVSKRVVVIDVGE-----GP 67 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + INP II + + EGCLSIP V R+A + V ++ + Q+I +GLL+ Sbjct: 68 LELINPVIIAKEGE-DLDDEGCLSIPGITGQVARAAKVKVEALNRQGELQVIEGEGLLSR 126 Query: 133 CLQHELDHLNGILFIDHLSRLKR 155 CLQHE+DHL GILF+D + R Sbjct: 127 CLQHEIDHLEGILFVDKAKKTSR 149 >gi|255008473|ref|ZP_05280599.1| peptide deformylase [Bacteroides fragilis 3_1_12] gi|313146202|ref|ZP_07808395.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12] gi|313134969|gb|EFR52329.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12] Length = 184 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/168 (39%), Positives = 99/168 (58%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+VVI+L Sbjct: 4 PIYVYGQPVLRQVAEDITPDYPNLKELIENMFETMDHADGVGLAAPQIGLPVRVVVINLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ K+ +IN I D +EGCLS+P VKR + I VRYMD N Sbjct: 64 VLSEDYPEYKDFRKAYINAHIDVVEGDEVSMEEGCLSLPGIHESVKRGSKIHVRYMDENF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ Sbjct: 124 VEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLK 171 >gi|332878465|ref|ZP_08446186.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683560|gb|EGJ56436.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 185 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 100/169 (59%), Gaps = 6/169 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ F P+LR+V+ I ++ LIDNM E + ++GIGLAA QIG+ RLVVI+L Sbjct: 4 PIYTFGQPVLRKVAEDITPDYPELKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVINLD 63 Query: 65 ----DHAHRKNPM-VFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D K + FINP I+ + D + +EGCLS+P V+R I V Y+D + Sbjct: 64 LISDDLPEYKGFVHAFINPHILEYDDTETDSMEEGCLSLPGIHEPVRRPTRIRVSYLDED 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + +G LA +QHE DHL+G +F+DHLS L++ M+ K+ L++ Sbjct: 124 FQPHDEWVEGYLARVMQHEFDHLDGKMFVDHLSMLRKQMVKGKLGNLLK 172 >gi|268589951|ref|ZP_06124172.1| peptide deformylase [Providencia rettgeri DSM 1131] gi|291314667|gb|EFE55120.1| peptide deformylase [Providencia rettgeri DSM 1131] Length = 169 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + ++ PD LR P+ + + LID++L+ MYSTD GIGLAA QI ++ Sbjct: 1 MAVREIIEIPDERLRIKCSPVTDFAA-VQTLIDDLLDTMYSTDNGIGLAATQIAETKSIM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ ++ R PMVF+NP+I+ S+ + YQEGCLS+P+ ADV R + V+ D + Sbjct: 60 VIDISEN--RDEPMVFVNPEIVE-SEGETSYQEGCLSVPEIYADVDRFLRVKVKAYDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + + +D LA +QHE+DHL+G +F+DHLS LKR+M Sbjct: 117 KAFEVDSDEFLAIVMQHEIDHLHGKVFLDHLSPLKRNM 154 >gi|257791461|ref|YP_003182067.1| peptide deformylase [Eggerthella lenta DSM 2243] gi|257475358|gb|ACV55678.1| peptide deformylase [Eggerthella lenta DSM 2243] Length = 183 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 80/150 (53%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+PIL +V P + + + L M + MY DG GLAA Q+GV RLVVID Sbjct: 7 IVQSPNPILNQVCDPCDLGDKSLKKLAKQMAKAMYKNDGCGLAAPQLGVAKRLVVIDCDQ 66 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +NP+V +NP ++ D V EGCLS P + R F VRY D + + I Sbjct: 67 EEGEQNPIVLVNPVLVDTQGDPVVAGEGCLSCPGITVPIARPPFARVRYFDLDGEEWEIE 126 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D LL CLQHELDHL+GI + + R Sbjct: 127 GDDLLGRCLQHELDHLDGITMFERCDPMAR 156 >gi|33357295|pdb|1LME|A Chain A, Crystal Structure Of Peptide Deformylase From Thermotoga Maritima gi|33357296|pdb|1LME|B Chain B, Crystal Structure Of Peptide Deformylase From Thermotoga Maritima Length = 176 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 93/155 (60%), Gaps = 5/155 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D+ + Sbjct: 18 VFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-- 75 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P+ INP+I+ + V +EG LS P+ +++RS I V+Y + ++ + Sbjct: 76 ---GPVAVINPEILEIDPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELE 132 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 G A QHE DHLNG+L ID +S KR ++ KK+ Sbjct: 133 GYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKL 167 >gi|308063423|gb|ADO05310.1| peptide deformylase [Helicobacter pylori Sat464] Length = 175 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P IL+ +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILKTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLIINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|317151959|ref|YP_004120007.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2] gi|316942210|gb|ADU61261.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2] Length = 165 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 1/160 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +PD +L + P+ +I ++ LI++M+E MY DG+GLAA Q+G RL+ +D Sbjct: 5 ICTWPDDVLAARAEPVAEITPEMKKLINDMVETMYEGDGVGLAAPQVGESIRLICVDQTG 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R + V INP+I+ + +EGCLS P++ V R + V MD + I Sbjct: 65 PKLRADLRVLINPEIVECDGEVE-SEEGCLSCPEFSGTVMRKERVKVTGMDPDGGPVCID 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 DG LA LQHE+DHLNGI D RLK+ M K+ +K Sbjct: 124 TDGFLAIVLQHEIDHLNGITIADRAGRLKKAMYRKRAAKW 163 >gi|91216549|ref|ZP_01253515.1| peptide deformylase [Psychroflexus torquis ATCC 700755] gi|91185343|gb|EAS71720.1| peptide deformylase [Psychroflexus torquis ATCC 700755] Length = 196 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + P+L++ + I K + I L++NM E MY+ G+GLAA QIG+ RL ++D + Sbjct: 4 PIAAYGSPVLKKKAEDISKDHPKIDELLENMFETMYNASGVGLAAPQIGLSIRLFIVDAK 63 Query: 65 DHAH-------RKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + KN + VFINP+II + + EGCLSIPD D+ R ITV Sbjct: 64 PFSEDESLSELEKNELEAFKRVFINPQIIEENGIEWDFNEGCLSIPDVHEDIFRKPEITV 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y+D N Q GL A +QHE DH+ G+LF D +S LK+ +I K++ + + Sbjct: 124 EYLDENFTPQKEKLSGLAARVVQHEYDHIEGVLFTDRISSLKKRLIKNKLTNISK 178 >gi|209526681|ref|ZP_03275205.1| peptide deformylase [Arthrospira maxima CS-328] gi|209492917|gb|EDZ93248.1| peptide deformylase [Arthrospira maxima CS-328] Length = 187 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 60/140 (42%), Positives = 87/140 (62%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ + +I+ +I L+ ML+ MYS DGIGLAA Q+GV +++VID + Sbjct: 24 DRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIVIDCEPDNAAT 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP I S + S +QEGCLSIP DV R + V + D N + + I A LL Sbjct: 84 PPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGRPRSILATELL 143 Query: 131 ATCLQHELDHLNGILFIDHL 150 +QHE+DHL G+LF+D + Sbjct: 144 CRAIQHEIDHLQGVLFVDRV 163 >gi|307150582|ref|YP_003885966.1| peptide deformylase [Cyanothece sp. PCC 7822] gi|306980810|gb|ADN12691.1| peptide deformylase [Cyanothece sp. PCC 7822] Length = 187 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 88/141 (62%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I K++ + L ML+ MYS +GIGLAA Q+ V +L+V+D + Sbjct: 24 DRVLRQPAKRIAKVDDAVRQLAKEMLQTMYSANGIGLAAPQVAVNKQLLVVDCEPDNATN 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+I FS D ++EGCLSIP DV R I V + D + + + + A GLL Sbjct: 84 QPIILINPQITHFSRDLCQFEEGCLSIPGVYLDVVRPKAIEVSFKDESGRPKKLKATGLL 143 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A +QHE+DHLNG++F+D + Sbjct: 144 ARVIQHEMDHLNGVMFVDRVG 164 >gi|238019378|ref|ZP_04599804.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748] gi|237864077|gb|EEP65367.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748] Length = 162 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/143 (43%), Positives = 92/143 (64%), Gaps = 4/143 (2%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 P+L++++ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V+D DHA Sbjct: 12 PVLKQIAEPVEHVNKKLRALIDDMAETMYETEGVGLAAPQVAVSKRIIVVD--DHA-GSG 68 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + INP+I T ++ V EGCLS+P Y DV+R ITV+ +D + + I A+G LA Sbjct: 69 LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFDKITVKGIDPHNKKVTIKAEGFLA 127 Query: 132 TCLQHELDHLNGILFIDHLSRLK 154 QHE+DHL G LFI+ + L+ Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLR 150 >gi|224060121|ref|XP_002300047.1| peptide deformylase [Populus trichocarpa] gi|222847305|gb|EEE84852.1| peptide deformylase [Populus trichocarpa] Length = 258 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 90/160 (56%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ L+D M +VMY TDGIGL+A Q+G+ +L+V + D Sbjct: 69 IVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPAD 128 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +V +NP++ +S ++ EGCLS P ADVKR + + D N + Sbjct: 129 EHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKIDARDINGARFTVN 188 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL A QHE DHL GILF D ++ D I + L Sbjct: 189 LSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQAL 228 >gi|269926311|ref|YP_003322934.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798] gi|269789971|gb|ACZ42112.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798] Length = 203 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 97/150 (64%), Gaps = 12/150 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-----QDHA 67 +LR+ S P+ K +S++ L+++M+E M DG+GL+AVQ+G L R+VV+++ QD Sbjct: 17 VLRKRSSPVTKFDSELRKLVEDMIETMREADGVGLSAVQVGDLRRVVVMEMPGKYEQDED 76 Query: 68 HRK---NP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA-Q 120 + +P V INP+I S D QEGCLS+P A+V R+ ++ VRY D N + Sbjct: 77 GNQIEVSPPKLYVMINPEITKVSHDRIPMQEGCLSLPGRYAEVPRAPWVEVRYKDLNGKE 136 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 H+++ + LL+ C+QHE+DHL+GILF + + Sbjct: 137 HKLLAEEQLLSQCIQHEVDHLDGILFTERI 166 >gi|303256332|ref|ZP_07342348.1| peptide deformylase [Burkholderiales bacterium 1_1_47] gi|330999027|ref|ZP_08322752.1| peptide deformylase [Parasutterella excrementihominis YIT 11859] gi|302861061|gb|EFL84136.1| peptide deformylase [Burkholderiales bacterium 1_1_47] gi|329575769|gb|EGG57295.1| peptide deformylase [Parasutterella excrementihominis YIT 11859] Length = 175 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L + + + + + L +M E MY G+GLAA Q+ RL+VID+ Sbjct: 5 PILKYPDPRLATKAAVVTEFDDKLKQLAADMAETMYKAPGVGLAATQVDRHIRLIVIDIT 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + + V +NP+++ S++ ++EGCLS+P V R A + V+ D + Sbjct: 65 EE--KNDLKVLVNPELVESSEETKPWEEGCLSLPGIYDKVTRPAKVKVKAQDLEGNFFEL 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 DGLLA C+QHE+DHL G +F+DHLS LK+ I K+ K+ Sbjct: 123 ECDGLLAVCVQHEMDHLEGTVFVDHLSMLKKQRIRHKIRKM 163 >gi|182420425|ref|ZP_02951645.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237667734|ref|ZP_04527718.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375711|gb|EDT73311.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237656082|gb|EEP53638.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 146 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/144 (43%), Positives = 91/144 (63%), Gaps = 6/144 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ R +E+I+ ++ LI +MLE MY DG+GLAA Q+G+L RL VID+ D Sbjct: 9 YGDDVLRKECREVEEIDKRLLVLIKDMLETMYDADGVGLAAPQVGILKRLFVIDIGD--- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+VFINP+II S + +EGCLS+P +V R ++ R ++ Q I A+ Sbjct: 66 --GPLVFINPEIIETSGK-QIDEEGCLSLPGKMEEVMRPNYVRARALNEKGQEFEIEAEE 122 Query: 129 LLATCLQHELDHLNGILFIDHLSR 152 LLA + HE DHLNG LFID +++ Sbjct: 123 LLARAILHEYDHLNGTLFIDRVNK 146 >gi|294055692|ref|YP_003549350.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221] gi|293615025|gb|ADE55180.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221] Length = 193 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 20/178 (11%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + +PILR V P+ + N ++ L ++M+E MY+ +GIGLAA QI ++ V+D++ Sbjct: 8 YGEPILREVGAPVTEFNPELKQLAEDMIETMYAEEGIGLAAQQIDKALQICVVDVRPPEG 67 Query: 69 RK-----------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + PM INPK+ D VY+EGCLS PD R V R + Sbjct: 68 AEVPYNYSFDGRQPPLDLIMPMAIINPKVTIIDDTEDVYEEGCLSFPDVRGRVHRPIGVR 127 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D II ADGLL C+ HE+DHLNG LFID + KRD+ K +++ +L+ Sbjct: 128 CEFQDTEGNPHIIEADGLLGRCILHEVDHLNGELFIDLME--KRDL-RKNETRIKKLK 182 >gi|152989916|ref|YP_001355638.1| peptide deformylase [Nitratiruptor sp. SB155-2] gi|151421777|dbj|BAF69281.1| formylmethionine deformylase [Nitratiruptor sp. SB155-2] Length = 176 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 93/150 (62%), Gaps = 4/150 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +PD L S+ +E + ++ L+D+M E M + +GIGLAA+Q+ V R ++I+L Sbjct: 3 RQIITYPDKRLFLRSKEVENFDEELQTLLDDMYETMVAKNGIGLAAIQVAVPLRALIINL 62 Query: 64 QDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H+++ + INP +I VY EGCLS+PDY DV+R+ ++ V Y D Sbjct: 63 PDEEGKQHKEDLLELINP-VIVEKKGTQVYTEGCLSVPDYYDDVERAEWVKVEYQDRYGN 121 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + DGLLA +QHE+DHL+G LFI+ L Sbjct: 122 KKTLETDGLLAVAVQHEMDHLDGHLFIEKL 151 >gi|134299448|ref|YP_001112944.1| peptide deformylase [Desulfotomaculum reducens MI-1] gi|134052148|gb|ABO50119.1| peptide deformylase [Desulfotomaculum reducens MI-1] Length = 172 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 62/142 (43%), Positives = 93/142 (65%), Gaps = 7/142 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP LR+V +P+ +I +I+ L+++M + + +T +G LAA Q+G L R+VVIDL + Sbjct: 11 DPALRKVCKPVCEITPNILQLLNDMADTLRATPNGAALAAPQVGFLRRVVVIDLGNEK-- 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + INP+II S + V EGCLS+P VKRS F+ V+ M+ + ++ GL Sbjct: 69 ---IELINPEIIEKSGE-QVGSEGCLSLPGIWGRVKRSKFVKVKAMNREGEEILVEGKGL 124 Query: 130 LATCLQHELDHLNGILFIDHLS 151 LA CLQHE+DHL+GIL+IDH++ Sbjct: 125 LARCLQHEIDHLDGILYIDHVA 146 >gi|158421732|ref|YP_001523024.1| peptide deformylase [Azorhizobium caulinodans ORS 571] gi|158328621|dbj|BAF86106.1| polypeptide deformylase [Azorhizobium caulinodans ORS 571] Length = 165 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 LV FPDP LR+ + P+ + + + ++L+ M + GIG+ G++ RLV ++L + Sbjct: 6 LVRFPDPRLRQPAEPVTVFDGALADRAQDLLDTMRAAPGIGITGPHAGLMIRLVALELPE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P ++NP+++ S + + EG +S+P +V+R A + V + + + Sbjct: 66 TA----PAFYVNPRVLRASPEMGRHPEGSVSMPGVVEEVERPARVRVAFQGLDGTGHEVE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLL+ CLQHE+D L+GI +I LSRLKR+ + KK KL++ Sbjct: 122 ADGLLSVCLQHEIDQLDGIFWIQRLSRLKRERVVKKYEKLLK 163 >gi|323344260|ref|ZP_08084486.1| peptide deformylase [Prevotella oralis ATCC 33269] gi|323094989|gb|EFZ37564.1| peptide deformylase [Prevotella oralis ATCC 33269] Length = 187 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 7/170 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ I+ P+LR+V++ I D+ LI +M E + ++DG+GLAA QIG R+ VIDL Sbjct: 4 PIYIYGQPVLRKVAKDITPDYPDLEELIKDMFETLTASDGVGLAAPQIGKSIRVAVIDLD 63 Query: 64 ----QDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + ++ +INP II D+ + +EGCLSIP V R + I V+YMD Sbjct: 64 VLSGELPEYKDFRKAYINPHIIEIDDNSKKEIMEEGCLSIPGIHESVTRPSRIHVQYMDT 123 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + DG LA +QHE DHL+G +F+D LS ++ M+ K+ L+Q Sbjct: 124 AFVQHDEWVDGYLARVMQHEFDHLDGTMFVDRLSPFRKQMVNSKLKALIQ 173 >gi|86137256|ref|ZP_01055834.1| peptide deformylase [Roseobacter sp. MED193] gi|85826580|gb|EAQ46777.1| peptide deformylase [Roseobacter sp. MED193] Length = 165 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +I + +M+E M + G+GL A QIGV+ RL V Sbjct: 1 MTARTCLPWPDKRLRTAATEVSEITDEIRAIWTDMIETMEAMPGVGLGANQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+++ S ++E ++P A +KR +TVRYMD N + Sbjct: 61 VD--GSRERGKAVRMANPEVLHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118 Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 I D G+ AT +QH++DHLNG LF DHLS++KRDM+ KK KL Sbjct: 119 --ITERDFVGIEATSVQHQIDHLNGKLFFDHLSKVKRDMLIKKSKKL 163 >gi|255323209|ref|ZP_05364344.1| peptide deformylase [Campylobacter showae RM3277] gi|255299732|gb|EET79014.1| peptide deformylase [Campylobacter showae RM3277] Length = 170 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 99/164 (60%), Gaps = 5/164 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ +P+ L S ++ + ++ +D+M E M + +GIGLAA+Q G R+++I+L Sbjct: 4 EILTYPNKKLFVKSLEVKAFDENLHKFLDDMYETMIAKNGIGLAAIQTGEAKRILIINLV 63 Query: 65 DHA---HRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D RK ++ INPKI+ + +YQEGCLS+P Y DVKR+ FIT+ Y D + Sbjct: 64 DEESKEQRKEDLLEIINPKILRKEGEI-IYQEGCLSVPGYYEDVKRAEFITLEYQDRFGE 122 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + ADGLL+ +QHE+DHL+G LFI+ + KR K+ K Sbjct: 123 RKELEADGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKK 166 >gi|218960357|ref|YP_001740132.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans] gi|167729014|emb|CAO79925.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans] Length = 186 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 67/163 (41%), Positives = 97/163 (59%), Gaps = 3/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ D LR+ I+ + I++++ MY+ DGIG+AA Q+G YR++VID + Sbjct: 9 PVRLYGDDFLRKKLPEIDYNTPGLPEFIEDLIYTMYARDGIGIAANQVGSFYRMIVIDPE 68 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + ++K+P+V INP +I + VY+EGC+S+PD ADV RS IT Y D Sbjct: 69 QDNKLNKKSPIVMINP-VIENKEGEVVYEEGCISLPDIFADVSRSKKITYSYTDRMGNRI 127 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A+ + A +QHE DHL GILFIDHL L R I K+ KL Sbjct: 128 TETAEEIKAVVIQHEFDHLEGILFIDHLGTLDRLKIMHKLKKL 170 >gi|255037799|ref|YP_003088420.1| peptide deformylase [Dyadobacter fermentans DSM 18053] gi|254950555|gb|ACT95255.1| peptide deformylase [Dyadobacter fermentans DSM 18053] Length = 194 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 102/177 (57%), Gaps = 15/177 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DPILR+ +R IEK D+ L ++M E M+ +G+GLAA QIG+ R+ V+D Sbjct: 4 PIVAYGDPILRKPTRFIEKDEVDLKKLSEDMFETMHGANGVGLAAPQIGLNIRIFVVDGT 63 Query: 65 DHAHRKN-------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 A R FINP+I+ + + ++EGCLSIP R DV R + Sbjct: 64 PFAERDEDDDDEPDLSLVDFKKTFINPEILEETGEEWGFEEGCLSIPGIRGDVYRPETLR 123 Query: 112 VRYMDCNA-QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +RY D + +H+ Y+ G+ A +QHE DHL G LF+D+L LK+ I KK++ + + Sbjct: 124 IRYRDLDWNEHEETYS-GMAARIIQHEYDHLLGKLFVDYLPTLKKQFIKKKLTDISK 179 >gi|300774181|ref|ZP_07084049.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] gi|300758992|gb|EFK55820.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] Length = 192 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 8/174 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+LR+ + I++ +I LI NM + MY+ G+GLAA QIG+ R+ VI Sbjct: 1 MKLPIVAYGDPVLRKKTIEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLPIRVFVI 60 Query: 62 DL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D +D + + VFINP I+ + + + EGCLSIPD +V R A + + Sbjct: 61 DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y+D N + I GL A +QHE DHL G LF D L LK+ M+ K+ + + Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISK 174 >gi|158320460|ref|YP_001512967.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] gi|158140659|gb|ABW18971.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] Length = 147 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 60/142 (42%), Positives = 88/142 (61%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR++S+P++ I+ I+ L+D+M+E MY DG+GLAA Q+G+L R++VID+ + Sbjct: 11 DPVLRKISKPVDTIDDKIITLLDDMIETMYDADGVGLAAPQVGILKRVIVIDIGEGV--- 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+II D EGCLS+P +V R + V+ D I+ + LL Sbjct: 68 --IELINPEIIA-EDGVQCDNEGCLSLPGITEEVARPRTVKVKGFDRFGNEMIVEGEELL 124 Query: 131 ATCLQHELDHLNGILFIDHLSR 152 A L HE+DHLNGILFID + Sbjct: 125 ARALCHEIDHLNGILFIDRAEK 146 >gi|329926582|ref|ZP_08280995.1| peptide deformylase [Paenibacillus sp. HGF5] gi|328939123|gb|EGG35486.1| peptide deformylase [Paenibacillus sp. HGF5] Length = 164 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 4/148 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V PD +L + ++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+VID D Sbjct: 6 IVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIVIDAGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + INP+I+ S+ EGCLSIP + DV+R+ +TV+ +D +I Sbjct: 66 E---HGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGNELVIT 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153 GLLA QHE+DHLNG+LF + R+ Sbjct: 122 GTGLLARAFQHEIDHLNGVLFTEIADRV 149 >gi|282850137|ref|ZP_06259516.1| peptide deformylase [Veillonella parvula ATCC 17745] gi|282579630|gb|EFB85034.1| peptide deformylase [Veillonella parvula ATCC 17745] Length = 162 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 91/143 (63%), Gaps = 4/143 (2%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 P+L++V+ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V+D Q + Sbjct: 12 PVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVAKRIIVVDDQSGS---G 68 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + INP+I T ++ V EGCLS+P Y DV+R +TV+ +D + + I A+G LA Sbjct: 69 LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFNKVTVKGIDPHNKKVTIKAEGFLA 127 Query: 132 TCLQHELDHLNGILFIDHLSRLK 154 QHE+DHL G LFI+ + L+ Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLR 150 >gi|284929247|ref|YP_003421769.1| peptide deformylase [cyanobacterium UCYN-A] gi|284809691|gb|ADB95388.1| peptide deformylase [cyanobacterium UCYN-A] Length = 183 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 1/154 (0%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D LR+ ++ + KI+ I L +ML+ MYS++GIGLA+ Q+G+ +L+VID + Sbjct: 20 DKDLRKSAKRVSKIDDSIRELARDMLQTMYSSNGIGLASTQVGIHKQLIVIDCEPELSTN 79 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INPKI +S + V +EGCLSIP DV R I V + + N + I A LL Sbjct: 80 APLILINPKINYYSQELCVMEEGCLSIPGVYFDVIRPEMIQVSFKNENGRPCQISATDLL 139 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A +QHE+DHLNG++F+D ++ D+ TK K Sbjct: 140 ARVIQHEIDHLNGVMFVDRVTN-DLDLTTKLQEK 172 >gi|307322251|ref|ZP_07601618.1| peptide deformylase [Sinorhizobium meliloti AK83] gi|306892102|gb|EFN22921.1| peptide deformylase [Sinorhizobium meliloti AK83] Length = 172 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP P+L + I + + L D++++ M + GIG+ A IG+L RL V Sbjct: 1 MAVRPIIRFPSPLLTTSAERIGRFGGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I++ P F+NP+I+ S + + + EG +S+P +V+R + + + + + Sbjct: 61 IEVDPQM---GPRSFVNPEIVWQSSETARHSEGSVSMPGVAEEVERPVRVRISFQTLDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + A+GL+A CLQHE+D LNGI +I LSRLKR+ K+ K Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKF 162 >gi|261405798|ref|YP_003242039.1| peptide deformylase [Paenibacillus sp. Y412MC10] gi|261282261|gb|ACX64232.1| peptide deformylase [Paenibacillus sp. Y412MC10] Length = 164 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 4/148 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V PD +L + ++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+VID D Sbjct: 6 IVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIVIDAGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + INP+I+ S+ EGCLSIP + DV+R+ +TV+ +D +I Sbjct: 66 E---HGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGNELVIT 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153 GLLA QHE+DHLNG+LF + R+ Sbjct: 122 GTGLLARAFQHEIDHLNGVLFTEIADRV 149 >gi|126661353|ref|ZP_01732418.1| peptide deformylase [Cyanothece sp. CCY0110] gi|126617360|gb|EAZ88164.1| peptide deformylase [Cyanothece sp. CCY0110] Length = 187 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 96/158 (60%), Gaps = 4/158 (2%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + D LR+ ++ I K++ I L ML+ MYS+ GIGLAA Q+ + +L+VID + Sbjct: 21 VLGDRALRQPAKRITKVDDSIRKLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDCEPDN 80 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P++ INPKI S++ V +EGCLSIP DV R I V + D + + I A Sbjct: 81 PENPPLILINPKITRVSEELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRKIQAT 140 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDM-ITKKMSK 164 LLA +QHE+DHLNG++F+D R++ D+ +T+K+ + Sbjct: 141 DLLARVIQHEMDHLNGVMFVD---RVENDLALTEKLQE 175 >gi|224369791|ref|YP_002603955.1| Def [Desulfobacterium autotrophicum HRM2] gi|259645178|sp|C0QI55|DEF_DESAH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|223692508|gb|ACN15791.1| Def [Desulfobacterium autotrophicum HRM2] Length = 174 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 5/161 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P +L + + +E I+ ++ L+++M E M+ G+GLAA Q+G R++V + Q + Sbjct: 9 YPAAVLLKKALQVETIDDTVIKLVNDMGETMFEAPGVGLAAPQVGQSRRIIVYNPQAGSS 68 Query: 69 RKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 N INP+II S E CLS+PDY +VKR +TVR ++ + Sbjct: 69 NANEDTKEFKALINPEIIASSGSIVSENEACLSVPDYSCNVKRFETVTVRGLNLEGKKLE 128 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A GLLA +QHE+DHL+GIL+ID +S LKR+M KK+ K Sbjct: 129 FDAQGLLAVIMQHEIDHLDGILYIDRISTLKRNMYKKKVRK 169 >gi|167752475|ref|ZP_02424602.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216] gi|167659544|gb|EDS03674.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216] Length = 181 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 5/170 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+V+F P+LR R I ++ LI++M + +G+GLAA QIG RL ++D Sbjct: 4 PIVVFGAPVLREKCREIGPDYPEVKKLIEDMFLTLEEAEGVGLAAPQIGKSIRLFIVDCT 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +DH + FINP+I S++ +Y+EGCLS+P V+RS I +RY+D N Sbjct: 64 PWGEDHPELADYRRAFINPEIYEVSEETKLYEEGCLSLPGLHESVRRSLAIRMRYLDENF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + GL A +QHE DHL G++F D LS L+R++I K+ L + R Sbjct: 124 EPHDEEFTGLPAWVIQHEYDHLEGVVFTDRLSPLRRNLIKSKLMSLTKGR 173 >gi|298491536|ref|YP_003721713.1| peptide deformylase ['Nostoc azollae' 0708] gi|298233454|gb|ADI64590.1| peptide deformylase ['Nostoc azollae' 0708] Length = 187 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 86/141 (60%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ + KI+ ++ L+ ML+ MYS DGIGLAA Q+G+ +L+VID + Sbjct: 24 DRVLRQPAKRVTKIDDELRQLVREMLQTMYSEDGIGLAAPQVGINKQLIVIDCEPDKPEA 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +V INP I S + V +EGCLSIP DVKR + + Y D + + + A LL Sbjct: 84 PALVLINPVIKQVSSELCVAEEGCLSIPKVYLDVKRPQVVEIAYKDEYGRPKTLKAGDLL 143 Query: 131 ATCLQHELDHLNGILFIDHLS 151 C+ HE+DHLNG+LF+D + Sbjct: 144 GRCILHEMDHLNGVLFVDRVE 164 >gi|303228554|ref|ZP_07315382.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a] gi|302516801|gb|EFL58715.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a] Length = 162 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 92/144 (63%), Gaps = 4/144 (2%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 PIL+ V+ P+E +N + LI++M + MY T+G+GLAA Q+ V R++V+D DHA Sbjct: 12 PILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIVVD--DHA-GSG 68 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + INP+II + + EGCLS+P Y DV+R +TV+ +D + + +I ADG LA Sbjct: 69 LIALINPEII-HGEGSQIGLEGCLSVPGYFGDVERFEKVTVKGIDPHNKKVMIKADGFLA 127 Query: 132 TCLQHELDHLNGILFIDHLSRLKR 155 QHE+DHL G LFI+ + L+R Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLRR 151 >gi|317121756|ref|YP_004101759.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM 12885] gi|315591736|gb|ADU51032.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM 12885] Length = 550 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 58/143 (40%), Positives = 90/143 (62%), Gaps = 5/143 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 +P+LR ++P+ K+N ++ L+D M MY+ DGIGLAA Q+GV R+VV+D+ D Sbjct: 31 EPVLRTPAQPVAKVNREVRQLLDRMAATMYAADGIGLAAPQVGVSKRIVVVDVGD----- 85 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ ++ EGCLS+P A+V+R A + V +D + + I +GLL Sbjct: 86 GLIELINPEIVRRGEETETAYEGCLSLPRLLAEVERPATVQVTALDRHGRRIWIEGEGLL 145 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A CLQHE+DHL+G+L D ++ Sbjct: 146 ARCLQHEIDHLDGVLITDRARKV 168 >gi|78044307|ref|YP_360316.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901] gi|123743168|sp|Q3AC18|DEF_CARHZ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|77996422|gb|ABB15321.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901] Length = 152 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 59/145 (40%), Positives = 95/145 (65%), Gaps = 6/145 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPIL+ +++PI++I +I+ L++NM + MY+ +G+GLAA QIGV R +V+D+ + Sbjct: 11 DPILKEIAKPIKEITPNIIKLLENMADTMYAYNGVGLAAPQIGVSKRAIVVDVGEGL--- 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+II S + EGCLS+P + +V R+ +TV+ ++ + +I A+GLL Sbjct: 68 --IELINPEIIEVSGEEKDI-EGCLSVPGVQGEVVRAKKVTVKGLNRYGEEIVIPAEGLL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRLKR 155 A QHE+DHLNGILF++ + R Sbjct: 125 ARAFQHEIDHLNGILFVEKADNIVR 149 >gi|330995383|ref|ZP_08319293.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841] gi|329575878|gb|EGG57402.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841] Length = 185 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 99/169 (58%), Gaps = 6/169 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ F P+LR+V+ I ++ LIDNM E + ++GIGLAA QIG+ RLVVI+L Sbjct: 4 PIYTFGQPVLRKVAEDITPDYPELKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVINLD 63 Query: 65 ----DHAHRKNPM-VFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D K + FINP I+ + D + +EGCLS+P V+R I V Y+D Sbjct: 64 LISDDLPEYKGFVHAFINPHILEYDDAETDSMEEGCLSLPGIHEPVRRPTRIRVSYLDEV 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + +G LA +QHE DHL+G +F+DHLS L++ M+ K+ L++ Sbjct: 124 FQPHDEWVEGYLARVMQHEFDHLDGKMFVDHLSMLRKQMVKGKLGNLLK 172 >gi|198275233|ref|ZP_03207764.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135] gi|198271816|gb|EDY96086.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135] Length = 184 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 5/167 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+ ++ I + LI NM E M DG+GLAA QIG+ R+VV++L Sbjct: 4 PIYVYGQPVLRQEAQDITPDYPGLKELITNMFETMDRADGVGLAAPQIGLPIRVVVVNLD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D K+ +INP I+ + +EGCLS+P VKR I V Y+D N Sbjct: 64 VLSDDMPEFKDFKRTYINPHILETGGELVSMEEGCLSLPGIHESVKRPDKIHVTYLDENM 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q + +G LA +QHE DHL+G +FIDHLS L++ MI K++ +V Sbjct: 124 QPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIRGKLNSMV 170 >gi|251797740|ref|YP_003012471.1| peptide deformylase [Paenibacillus sp. JDR-2] gi|247545366|gb|ACT02385.1| peptide deformylase [Paenibacillus sp. JDR-2] Length = 161 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDP+LR ++ + K NS++ L+ +M E MY DG+GLAA QIG+ R++V Sbjct: 1 MAIRIIVKEPDPVLRETAKEVTKFNSNLQKLLKDMAETMYDADGVGLAAPQIGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + +NP +I ++ V EGCLSIP+ DVKR I + D Sbjct: 61 VDIGDETGL---ISMVNP-VIVENEGEQVGPEGCLSIPNLNGDVKRYERIVINGQDGEGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + A G LA QHE+DHLNGILF D Sbjct: 117 PFTVEASGFLAVAFQHEIDHLNGILFTD 144 >gi|332521217|ref|ZP_08397675.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4] gi|332043310|gb|EGI79507.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4] Length = 196 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/170 (41%), Positives = 95/170 (55%), Gaps = 12/170 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P+V + DP+L+ ++ I+K ++ LI NM E M+ G+GLAA QIG+ R+ ++D Sbjct: 4 PIVAYGDPVLKVKAKEIDKDYPNLKELITNMQETMHGAYGVGLAAPQIGLPIRMFLVDAS 63 Query: 63 -------LQD--HAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L+D A KN FINP I+ S D + EGCLSIPD R DV R I V Sbjct: 64 PFADDDVLEDDERAFLKNFKHTFINPTILEESGDEWAFNEGCLSIPDVREDVFRKPNIKV 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 Y D + + + GL A QHE DH+ GILF D LS LK+ +I K+ Sbjct: 124 EYFDEDFKKHTMELSGLAARVFQHEYDHIEGILFTDKLSSLKKRLIKGKL 173 >gi|160883802|ref|ZP_02064805.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483] gi|260170792|ref|ZP_05757204.1| peptide deformylase [Bacteroides sp. D2] gi|293372830|ref|ZP_06619208.1| peptide deformylase [Bacteroides ovatus SD CMC 3f] gi|299149164|ref|ZP_07042225.1| peptide deformylase [Bacteroides sp. 3_1_23] gi|315919126|ref|ZP_07915366.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156110887|gb|EDO12632.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483] gi|292632205|gb|EFF50805.1| peptide deformylase [Bacteroides ovatus SD CMC 3f] gi|298512831|gb|EFI36719.1| peptide deformylase [Bacteroides sp. 3_1_23] gi|313693001|gb|EFS29836.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 184 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+V I L Sbjct: 4 PIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTITLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +++ K+ +INP I+ + +EGCLS+P VKR I V+YMD N Sbjct: 64 PLSEEYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMDENF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ Sbjct: 124 VEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLK 171 >gi|282890597|ref|ZP_06299120.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499594|gb|EFB41890.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 177 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 92/158 (58%), Gaps = 5/158 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 L + +PILR+ + PIE+I+ I L +M+E M++T+GIGLAA QIG L + V + Sbjct: 5 LAYYGNPILRKKAIPIERIDDSIRQLATDMIETMHATNGIGLAANQIGQLLSIFVTCVPI 64 Query: 64 -QDHAHR--KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 QD VFINPKI+ +S +F V+ EGCLSIP +DV R I ++ MD + Sbjct: 65 AQDDGTWIDGKDRVFINPKILAYSQEFQVFSEGCLSIPKLFSDVARPESIKIQAMDLDGN 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 G AT HE DHLNG+LFID L R +R I Sbjct: 125 VFEETMTGYEATNFMHENDHLNGVLFIDRLHRTERKKI 162 >gi|118443183|ref|YP_878318.1| peptide deformylase [Clostridium novyi NT] gi|118133639|gb|ABK60683.1| peptide deformylase [Clostridium novyi NT] Length = 150 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ R +E+IN I+ LI++M E MY DG+GLAA Q+G+L RLVV Sbjct: 1 MALRNIRVEEDSILRKKCREVEEINDRILTLIEDMKETMYEADGVGLAAPQVGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+II + Y EGCLS+P + V R +T + ++ + Sbjct: 61 IDVGE-----GPITLINPEIIESEGSQTDY-EGCLSLPGKQGKVTRPYKVTAKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 I +GLLA + HELDHL+G LFID + Sbjct: 115 PVEIKGEGLLARAICHELDHLDGTLFIDKV 144 >gi|28210907|ref|NP_781851.1| peptide deformylase [Clostridium tetani E88] gi|39930881|sp|Q895Q2|DEF_CLOTE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28203346|gb|AAO35788.1| polypeptide deformylase [Clostridium tetani E88] Length = 150 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 61/154 (39%), Positives = 96/154 (62%), Gaps = 6/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L D +LR+ SR +EKI+ I L+D+ML+ MY +G+GLAA Q+G+L R+VV Sbjct: 1 MAIRNLRFLGDELLRKKSRRVEKIDDRIQALLDDMLDTMYENNGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+II + + QEGCLS+P + +V+R + V+ + + + Sbjct: 61 IDIGE-----GPLFLINPEIIEQEGSY-IEQEGCLSVPGRQGEVERPYRVKVKAQNRDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I+ + LA L HE+DHLNG+LF+D + +K Sbjct: 115 EIIVEGEEFLAKALCHEIDHLNGVLFVDKIIDVK 148 >gi|83273759|ref|XP_729539.1| polypeptide deformylase [Plasmodium yoelii yoelii str. 17XNL] gi|23487628|gb|EAA21104.1| polypeptide deformylase, putative [Plasmodium yoelii yoelii] Length = 236 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 97/163 (59%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +VI+P+ ILR+ S + + ++ NLI M + MY GIGL+A Q+ + R++V + L Sbjct: 62 IVIYPNSILRQKSEEVIYFDDNLKNLIRRMFKAMYENKGIGLSAPQVNISKRIIVWNALY 121 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + KN VFINP I+ S + EGCLS P+ A V+R A +++ Y D N + Sbjct: 122 EKRDEKNERVFINPLIVQESAVKNKLIEGCLSFPNIEAKVERPAIVSISYYDINGNKHLK 181 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ A QHE DHLNG+LFID +++ ++ I K+++LV+ Sbjct: 182 ILKGIHARVFQHEYDHLNGVLFIDRITQTEKQKIKGKLNELVR 224 >gi|30249917|ref|NP_841987.1| formylmethionine deformylase [Nitrosomonas europaea ATCC 19718] gi|39931083|sp|Q82TC8|DEF2_NITEU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|30180954|emb|CAD85881.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718] Length = 185 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +++ + I +I L+ NM E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 26 YPDERLHKIATEVPSITREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIVIDVSET-- 83 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+II S + QEGCLS+P V R+ +TVR + + + A G Sbjct: 84 RDELLVLINPEIIASSGNAET-QEGCLSVPGIFDKVTRAEEVTVRATGIDGKSFEMDASG 142 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS K+ I K+ K Sbjct: 143 LLAVCIQHEMDHLMGKVFVEYLSPFKQSRILSKLKK 178 >gi|18310726|ref|NP_562660.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110802372|ref|YP_699030.1| peptide deformylase [Clostridium perfringens SM101] gi|23396559|sp|Q8XJL2|DEF1_CLOPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|18145407|dbj|BAB81450.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110682873|gb|ABG86243.1| peptide deformylase [Clostridium perfringens SM101] Length = 147 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 60/139 (43%), Positives = 89/139 (64%), Gaps = 4/139 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+ R ++ IN I L+++M+E MY +G+GLA+ Q+G+L R+ V+D D A + Sbjct: 11 DEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLASPQVGILKRIFVVDAMDGAGSR 70 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 VFINP+I+ S + +EGCLS+P VKR+ I ++ +D N ++ A+G L Sbjct: 71 ---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEGFL 126 Query: 131 ATCLQHELDHLNGILFIDH 149 A +QHE DHL G+LFIDH Sbjct: 127 ARAIQHEYDHLEGVLFIDH 145 >gi|282881719|ref|ZP_06290382.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1] gi|281304478|gb|EFA96575.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1] Length = 187 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 7/170 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ I+ P+LR+V++ I ++ LI +M E M ++DG+GLAA QIG R+VVIDL Sbjct: 4 PIYIYGQPVLRKVAQDITPAYENLQQLIADMFETMDASDGVGLAAPQIGKSIRVVVIDLN 63 Query: 64 ----QDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + ++ +INP II +D S +EGCLSIP V R I V+YMD Sbjct: 64 VLSDELPEYKDFRRAYINPHIIEIDEDSPVSTMEEGCLSIPGIHESVTRHTRIRVQYMDS 123 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q + +G LA +QHE DHL G +F+D +S ++ +I K+ + Q Sbjct: 124 DFQPHDEWVEGYLARVMQHEFDHLEGKMFVDRVSPFRKQLIKNKLKAMTQ 173 >gi|255656564|ref|ZP_05401973.1| peptide deformylase 2 [Clostridium difficile QCD-23m63] gi|296449984|ref|ZP_06891748.1| peptide deformylase [Clostridium difficile NAP08] gi|296878365|ref|ZP_06902373.1| peptide deformylase [Clostridium difficile NAP07] gi|296261254|gb|EFH08085.1| peptide deformylase [Clostridium difficile NAP08] gi|296430663|gb|EFH16502.1| peptide deformylase [Clostridium difficile NAP07] Length = 146 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 96/152 (63%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +EKI+ I+ L+D+M E MY DG+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II S + + +EGCLS+ +V+R ++ VR ++ N + Sbjct: 61 IDIGEEL-----IELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA HELDHL+GILF+D + + Sbjct: 115 TIELEGEELLARAFCHELDHLDGILFVDKIEK 146 >gi|269797908|ref|YP_003311808.1| peptide deformylase [Veillonella parvula DSM 2008] gi|269094537|gb|ACZ24528.1| peptide deformylase [Veillonella parvula DSM 2008] Length = 162 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 91/143 (63%), Gaps = 4/143 (2%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 P+L++V+ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V+D Q + Sbjct: 12 PVLKQVAEPVEHVNKKLRVLIDDMAETMYKTEGVGLAAPQVAVAKRIIVVDDQSGS---G 68 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + INP+I T ++ V EGCLS+P Y DV+R +TV+ +D + + I A+G LA Sbjct: 69 LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFNKVTVKGIDPHNKKVTIKAEGFLA 127 Query: 132 TCLQHELDHLNGILFIDHLSRLK 154 QHE+DHL G LFI+ + L+ Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLR 150 >gi|253575776|ref|ZP_04853111.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844819|gb|EES72832.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] Length = 160 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 59/148 (39%), Positives = 91/148 (61%), Gaps = 4/148 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V PD +L +V++ ++KI +I L+ +M + MY +G+GLAA QIG+L R++V+D+ D Sbjct: 6 IVKEPDEVLHQVAKEVKKITPNIQKLLTDMADTMYDAEGVGLAAPQIGILKRVIVVDVGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + INP+I++ + EGCLSIP YR DV+R+ +TV+ +D N Sbjct: 66 E---HGLIELINPEIVSKEGE-QFGPEGCLSIPGYRGDVRRAMTVTVKGLDRNGNEVTYT 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153 LLA QHE+DHLNG+L+ D R+ Sbjct: 122 GSELLARAFQHEIDHLNGVLYTDIAERV 149 >gi|53712973|ref|YP_098965.1| peptide deformylase [Bacteroides fragilis YCH46] gi|60681185|ref|YP_211329.1| peptide deformylase [Bacteroides fragilis NCTC 9343] gi|253563049|ref|ZP_04840506.1| peptide deformylase [Bacteroides sp. 3_2_5] gi|265763070|ref|ZP_06091638.1| peptide deformylase [Bacteroides sp. 2_1_16] gi|81315745|sp|Q5LEQ9|DEF_BACFN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81690706|sp|Q64VP5|DEF_BACFR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|52215838|dbj|BAD48431.1| peptide deformylase [Bacteroides fragilis YCH46] gi|60492619|emb|CAH07391.1| putative peptide deformylase [Bacteroides fragilis NCTC 9343] gi|251946825|gb|EES87107.1| peptide deformylase [Bacteroides sp. 3_2_5] gi|263255678|gb|EEZ27024.1| peptide deformylase [Bacteroides sp. 2_1_16] gi|301162674|emb|CBW22221.1| putative peptide deformylase [Bacteroides fragilis 638R] Length = 184 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+VVI+L Sbjct: 4 PIYVYGQPVLRQVAEDITVDYPNLKELIENMFETMDHADGVGLAAPQIGLPIRVVVINLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ K+ +IN I + +EGCLS+P VKR + I VRYMD N Sbjct: 64 VLSEDYPEYKDFRKAYINAHIDVVEGEEVSMEEGCLSLPGIHESVKRGSKIHVRYMDENF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ Sbjct: 124 VEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLK 171 >gi|298372481|ref|ZP_06982471.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058] gi|298275385|gb|EFI16936.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058] Length = 185 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 9/174 (5%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ +LR V++PI + +I LIDNM E M + DGIGLAA QIG+ RL VID+ Sbjct: 4 PVYLYGSGVLREVAKPITEDYPNIRELIDNMFETMRNADGIGLAAPQIGLSIRLFVIDIS 63 Query: 65 D-HAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R P +FIN +I D +Y+EGCLSIP V R I ++Y+ Sbjct: 64 PLDTERDFPQLRDCPKQKIFINAEITERYGDTVIYEEGCLSIPKINEKVPRPDKIKIKYL 123 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + +G A +QHE DH++G +F+DH+S L++ +I K++ +V+ + Sbjct: 124 DETFREHEDEFEGYFARVIQHECDHIDGKMFVDHISPLRKQLIKSKLADIVKRK 177 >gi|289548788|ref|YP_003473776.1| peptide deformylase [Thermocrinis albus DSM 14484] gi|289182405|gb|ADC89649.1| peptide deformylase [Thermocrinis albus DSM 14484] Length = 174 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 6/160 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P P+L++ + ++ I+S+I+ L+ +M + MY+ +G+GLAA QIG R++VID Sbjct: 8 YPHPLLKQPTLKVDVIDSEILKLVQDMWDTMYAEEGVGLAANQIGEPLRIMVIDTT--PK 65 Query: 69 RKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R++P +V INP++I ++ Y+EGCLS P +V R + + R +D + + + Sbjct: 66 RESPPVKLVLINPQLIE-AEGHITYREGCLSFPGLSVEVTRYSKVRFRALDLSGEEKEYQ 124 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +G A QHELDHLNGI FID LS L+R + +K KL Sbjct: 125 LEGFPAIVFQHELDHLNGITFIDRLSGLRRRLALEKYGKL 164 >gi|328675276|gb|AEB27951.1| Peptide deformylase [Francisella cf. novicida 3523] Length = 172 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 5/162 (3%) Query: 9 FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R V + D+ Sbjct: 8 YPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFFV--MYDN 65 Query: 67 AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +NP + + +EGCLS P A V R+ + ++ ++ + + Sbjct: 66 LEEQNPEIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFGEEIEVE 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 126 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQ 167 >gi|237716076|ref|ZP_04546557.1| peptide deformylase [Bacteroides sp. D1] gi|237722139|ref|ZP_04552620.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4] gi|262407688|ref|ZP_06084236.1| peptide deformylase [Bacteroides sp. 2_1_22] gi|294643796|ref|ZP_06721594.1| peptide deformylase [Bacteroides ovatus SD CC 2a] gi|294808456|ref|ZP_06767209.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b] gi|298480836|ref|ZP_06999031.1| peptide deformylase [Bacteroides sp. D22] gi|229443723|gb|EEO49514.1| peptide deformylase [Bacteroides sp. D1] gi|229447949|gb|EEO53740.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4] gi|262354496|gb|EEZ03588.1| peptide deformylase [Bacteroides sp. 2_1_22] gi|292640885|gb|EFF59105.1| peptide deformylase [Bacteroides ovatus SD CC 2a] gi|294444384|gb|EFG13098.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b] gi|295085225|emb|CBK66748.1| peptide deformylase [Bacteroides xylanisolvens XB1A] gi|298272859|gb|EFI14425.1| peptide deformylase [Bacteroides sp. D22] Length = 184 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+V I L Sbjct: 4 PIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTITLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +++ K+ +INP I+ + +EGCLS+P VKR I V+YMD N Sbjct: 64 PLSEEYPEFKDFNKAYINPHILEVGGEEVNMEEGCLSLPGIHETVKRGDKIRVKYMDENF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ Sbjct: 124 VEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLK 171 >gi|149176747|ref|ZP_01855358.1| peptide deformylase [Planctomyces maris DSM 8797] gi|148844388|gb|EDL58740.1| peptide deformylase [Planctomyces maris DSM 8797] Length = 196 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 2/154 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-Q 64 +V +P P LR S+P++ I ++ +++ NM ++MY GIGLAA Q+ + YRL VI+L Sbjct: 6 IVNYPHPALRWKSKPVKSITPELRDIVRNMFDLMYEARGIGLAANQVALPYRLFVINLTS 65 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D + VFINP+I T + +EGCLS+P DVKRS ITV D N Q I Sbjct: 66 DPNEPEEEFVFINPEI-TKRKGTAEGEEGCLSLPQVYGDVKRSEEITVEAYDLNGQLFEI 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 D L A +QHE DH+ GI+F D + KR+ I Sbjct: 125 TLDDLAARAVQHEHDHIEGIMFPDRMVEAKRNEI 158 >gi|39998545|ref|NP_954496.1| polypeptide deformylase [Geobacter sulfurreducens PCA] gi|39985492|gb|AAR36846.1| polypeptide deformylase [Geobacter sulfurreducens PCA] gi|298507488|gb|ADI86211.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens KN400] Length = 169 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 104/170 (61%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + ++ +P P+L++V + I+ I LID+++E M G +G+AA QIGV R+ Sbjct: 1 MPAQTILQYPHPVLKKVCHTVTAIDEAIRGLIDDLIETMREGPGSVGVAAPQIGVTLRVC 60 Query: 60 VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 VID+ H K+ ++ +NP+I+ S + +V +EGC+S+PDY DV+RS + VR++ Sbjct: 61 VIDVSGSRHGKDNNHGLLLMVNPEIVDRSGN-AVMREGCMSVPDYTGDVERSTEVRVRFL 119 Query: 116 D-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + I A G A +QHE+DHL+GILF+D + +K + +K K Sbjct: 120 DGADGSEREITASGFEAVAIQHEMDHLDGILFLDRIVSIKTGLFRRKNYK 169 >gi|154244580|ref|YP_001415538.1| peptide deformylase [Xanthobacter autotrophicus Py2] gi|154158665|gb|ABS65881.1| peptide deformylase [Xanthobacter autotrophicus Py2] Length = 168 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR V+ P+ + + NL+ ++L+ + + GIG+ A IG+ R+VV Sbjct: 1 MTARQIITFPDARLRSVAAPVTVFDDALANLVADLLDTLRAAPGIGITAPHIGIGKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +INP+I+ S + + EG +S+P +V+R A + VRY D + Sbjct: 61 LEL---SAEDGVRAYINPQIVWASAELIRHAEGSVSMPGVTEEVERPARVHVRYQDLSGA 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGL A C QHE+D L+G+ +I LSRLKR+ + K+ K Sbjct: 118 EHLEEADGLRAVCHQHEIDQLDGVFWIQRLSRLKRERVIKRYEK 161 >gi|119357657|ref|YP_912301.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266] gi|158512604|sp|A1BHK0|DEF_CHLPD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|119355006|gb|ABL65877.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266] Length = 188 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 65/165 (39%), Positives = 103/165 (62%), Gaps = 5/165 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ I+ D +LR ++P++ I+ +I +L+ +MLE M + GIGLAA Q+G RL+VIDL Sbjct: 4 PINIYNDEVLRATAKPLKGIDRNIRDLVASMLESMRNASGIGLAAPQVGCSIRLLVIDLS 63 Query: 64 --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +A K P+V INP ++ ++ +EGCLS+P DV R + IT++Y D + + Sbjct: 64 CMEKYADEK-PVVVINPHLLAVKG-YNAMEEGCLSLPGILGDVVRPSSITLKYRDEHFEE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + G++A LQHE+DHL+G LFID + + R I K++ L Sbjct: 122 RTGEFSGMMARVLQHEIDHLDGKLFIDRMQKRDRRKIDKELHSLA 166 >gi|313893407|ref|ZP_07826979.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412] gi|313442048|gb|EFR60468.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412] Length = 162 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 91/143 (63%), Gaps = 4/143 (2%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 P+L++V+ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V+D Q + Sbjct: 12 PVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVSKRIIVVDDQVGS---G 68 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + INP+I T ++ V EGCLS+P Y DV+R ITV+ +D + + I A+G LA Sbjct: 69 LIALINPEI-THAEGSQVGPEGCLSVPGYYGDVERFNKITVKGIDPHNKKVTIKAEGFLA 127 Query: 132 TCLQHELDHLNGILFIDHLSRLK 154 QHE+DHL G LFI+ + L+ Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLR 150 >gi|297568346|ref|YP_003689690.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2] gi|296924261|gb|ADH85071.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2] Length = 200 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 30/199 (15%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP P L+ ++P+ + N ++ L +M+E M++ G+GLAA QIGV R+VV Sbjct: 1 MAIQPIVQFPVPSLKSRAKPVSEFNDELRRLALDMIETMHAAPGVGLAAPQIGVPLRVVV 60 Query: 61 ID-------------LQDHAHRKNP----------------MVFINPKIITFSDDFSVYQ 91 I Q+H +V INP+I+ ++ V + Sbjct: 61 IAGRVTLDEEQRAALAQEHGEAGEAAPSPPSPPSEEELAPSLVLINPEIVE-AEGQQVDE 119 Query: 92 EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 EGCLS+ +Y +VKR A I V+ D + Q A+ A +QHELDHL+G LFID +S Sbjct: 120 EGCLSVREYATNVKRFARIRVKAQDLSGQPLDFVAEDFFARVIQHELDHLDGTLFIDRIS 179 Query: 152 RLKRDMITKKMSKLVQLRD 170 LKR + KK+ K++Q + Sbjct: 180 PLKRTLYRKKLKKIMQAEE 198 >gi|323705507|ref|ZP_08117082.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535409|gb|EGB25185.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11] Length = 158 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 95/150 (63%), Gaps = 6/150 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPIL + ++ ++KI+ ++ ++D+M E MY+ DG+GLAA QIG+L RLVV+D+ D Sbjct: 11 DPILYKKAKYVDKIDDHVIMILDDMAETMYNADGVGLAANQIGILRRLVVVDVGD----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+II + + +EGCLS+P+ +VKR + VRY D +++ + + L Sbjct: 66 GLIELINPEII-LEEGEQIGKEGCLSVPNVTGEVKRPKKVRVRYQDRTGEYKELEGEDFL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A L HE+DHLNGILF++ R+ D K Sbjct: 125 ARALSHEIDHLNGILFVNKAIRIINDEEEK 154 >gi|319951883|ref|YP_004163150.1| peptide deformylase [Cellulophaga algicola DSM 14237] gi|319420543|gb|ADV47652.1| peptide deformylase [Cellulophaga algicola DSM 14237] Length = 196 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 64/159 (40%), Positives = 87/159 (54%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ + DP+LR+V I K + L++NM E MY+ G+GLAA QIG+ RL VID Sbjct: 4 PIIAYGDPVLRKVGTDIAKDYPKLETLVENMWETMYNASGVGLAAPQIGLPIRLFVIDTT 63 Query: 65 DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + ++ VF+N KI + + + EGCLSIPD R DV R I + Sbjct: 64 PFSEDEDLSPEDQKALDGFKKVFVNAKIEEETGEEWNFNEGCLSIPDVREDVNRKETIKI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+D N + GLLA +QHE DH+ GILF D LS Sbjct: 124 TYLDENFNEKSESYGGLLARVIQHEYDHIEGILFTDKLS 162 >gi|109947463|ref|YP_664691.1| peptide deformylase [Helicobacter acinonychis str. Sheeba] gi|122973308|sp|Q17XD4|DEF_HELAH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|109714684|emb|CAJ99692.1| polypeptide deformylase [Helicobacter acinonychis str. Sheeba] Length = 175 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 101/160 (63%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 +P ILR +S+ + ++ +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVVSFDAKFHQQLDDMHETMIASEGIGLAAIQVGLPLRMLLINLPREDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +++EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETKGSI-MFKEGCLSVPGFYEEVERFEKVKIEYQNRFAKVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|223040084|ref|ZP_03610365.1| peptide deformylase [Campylobacter rectus RM3267] gi|222878670|gb|EEF13770.1| peptide deformylase [Campylobacter rectus RM3267] Length = 170 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 99/164 (60%), Gaps = 5/164 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ +P+ L S ++ + ++ +D+M E M + +GIGLAA+Q G R+++++L Sbjct: 4 EILTYPNKKLFVKSLEVKVFDEELHKFLDDMYETMIAKNGIGLAAIQTGEAKRILIVNLF 63 Query: 65 DHA---HRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D RK ++ INPKI+ + +YQEGCLS+P Y DVKR+ FIT+ Y D Q Sbjct: 64 DEESKEQRKEDLLEIINPKILRKEGEI-IYQEGCLSVPGYYEDVKRAEFITLEYQDRFGQ 122 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A+GLL+ +QHE+DHL+G LFI+ + KR K+ K Sbjct: 123 RRELEAEGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKK 166 >gi|307719714|ref|YP_003875246.1| peptide deformylase [Spirochaeta thermophila DSM 6192] gi|306533439|gb|ADN02973.1| peptide deformylase [Spirochaeta thermophila DSM 6192] Length = 163 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 4/150 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+ + + +I+ + +++ M ++M+ +GIGLAA Q+G+ R + H Sbjct: 8 DEILRKRAVLVPEIDGRVARVVEGMFDLMHEANGIGLAAPQVGISQRFFIC----HVPEG 63 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+VFINP+I S + + ++EGCLSIP ADV R A + V + + + ADG+L Sbjct: 64 EPLVFINPEITATSPELTTFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRMEADGML 123 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A +QHE DHLNG+LF+D L KR+ + + Sbjct: 124 ARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153 >gi|188585959|ref|YP_001917504.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF] gi|229487487|sp|B2A2K1|DEF_NATTJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|179350646|gb|ACB84916.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 156 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 60/147 (40%), Positives = 92/147 (62%), Gaps = 6/147 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHR 69 DP+L+R ++ + I+ + L+ NML+ MY +GIGLAA QIG+ R++V+D+ +D ++ Sbjct: 11 DPVLKRKAKKVTNIDDRLERLLTNMLDTMYEAEGIGLAAPQIGISKRVIVVDIGEDEIYQ 70 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 INP+I+ SD+ EGCLS P + V R +TV+ ++ + II A+GL Sbjct: 71 -----LINPEIVDTSDEQEKALEGCLSYPGLQGRVTRPVKVTVKALNPQEEEMIIEAEGL 125 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRD 156 LA LQHE+DHL+GI FID + R+ Sbjct: 126 LARALQHEIDHLDGITFIDRAEEVFRE 152 >gi|289449949|ref|YP_003475241.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184496|gb|ADC90921.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 160 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 66/150 (44%), Positives = 95/150 (63%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58 M + +++ D LR+ +RP++ I + I ++D+M++ +Y+T +G+GLAAVQ+G+L R+ Sbjct: 1 MAVREIIVDGDDRLRKKARPVDNIADPKIQQIVDDMIDTLYATGNGVGLAAVQVGILKRI 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 VIDLQD K V+INP+II QEGCLS+P + +V R A +TVR D N Sbjct: 61 FVIDLQDG---KGLKVYINPEIIDRQGS-QCNQEGCLSLPGFWGEVIRPAKVTVRAFDRN 116 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFID 148 + A GL A C+ HE DHLNGILF D Sbjct: 117 GKQFEQTATGLGAICISHETDHLNGILFKD 146 >gi|303232127|ref|ZP_07318830.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6] gi|302513233|gb|EFL55272.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6] Length = 162 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 4/144 (2%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 PIL+ V+ P+E +N + LI++M + MY T+G+GLAA Q+ V R++V+D DHA Sbjct: 12 PILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIVVD--DHA-GSG 68 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + INP+II + + EGCLS+P Y DV+R +TV+ +D + + +I A+G LA Sbjct: 69 LIALINPEII-HGEGSQIGLEGCLSVPGYFGDVERFEKVTVKGIDPHNKKVMIKAEGFLA 127 Query: 132 TCLQHELDHLNGILFIDHLSRLKR 155 QHE+DHL G LFI+ + L+R Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLRR 151 >gi|255692008|ref|ZP_05415683.1| peptide deformylase [Bacteroides finegoldii DSM 17565] gi|260622254|gb|EEX45125.1| peptide deformylase [Bacteroides finegoldii DSM 17565] Length = 184 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+V I L Sbjct: 4 PIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ K+ +INP I+ + +EGCLS+P VKR I V+YMD N Sbjct: 64 PLSEDYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMDENF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ Sbjct: 124 VEYEEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLK 171 >gi|289803413|ref|ZP_06534042.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 135 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 90/130 (69%), Gaps = 3/130 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ + + Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--N 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGNPFELEADG 125 Query: 129 LLATCLQHEL 138 LLA C+QHE+ Sbjct: 126 LLAICIQHEM 135 >gi|270308074|ref|YP_003330132.1| peptide deformylase [Dehalococcoides sp. VS] gi|270153966|gb|ACZ61804.1| peptide deformylase [Dehalococcoides sp. VS] Length = 167 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 4/147 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 P+P+LR+ ++ + I+S I LID+M+E M S DG GLAA Q+GV RLVV D Sbjct: 9 LPEPVLRKKAKKVPSIDSSIQTLIDDMIETMSSADGAGLAAPQVGVSLRLVVFREPDA-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 K V INP+I+ V EGCLSIP Y ++ R+ +T + +D + + I G Sbjct: 67 -KEATVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGKACRIKGTG 124 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKR 155 ++A L+HE +HL+GIL+IDHL ++ Sbjct: 125 IVAQLLEHETEHLDGILYIDHLESEEK 151 >gi|257877734|ref|ZP_05657387.1| formylmethionine deformylase [Enterococcus casseliflavus EC20] gi|257811900|gb|EEV40720.1| formylmethionine deformylase [Enterococcus casseliflavus EC20] Length = 162 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 103/164 (62%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LRR ++P++ I +++ L+D++ E M + DGIG+AA Q+G ++ ++ Sbjct: 1 MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++++ + INP+II S + S+ EGCLSIP VKR+ ITVRY D + Sbjct: 61 EVEE----DDRFEMINPEIIASSGE-SLDVEGCLSIPHTFGTVKRADEITVRYFDREGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 + A G LA +QHE+DHLNG+LF+D L R+ + + K M + Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKLVERIPEEDLEKYMEE 159 >gi|172039521|ref|YP_001806022.1| peptide deformylase [Cyanothece sp. ATCC 51142] gi|171700975|gb|ACB53956.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142] Length = 187 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/143 (40%), Positives = 86/143 (60%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + D +LR+ ++ I K++ + L ML+ MYS+ GIGLAA Q+ + +L+VID + Sbjct: 21 VLGDRVLRQPAKRIAKVDDSVRQLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDCEPDN 80 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P++ INPKI S + V +EGCLSIP DV R I V + D + + I A Sbjct: 81 PANPPLILINPKITRVSQELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRKIQAT 140 Query: 128 GLLATCLQHELDHLNGILFIDHL 150 LLA +QHE+DHLNG++F+D + Sbjct: 141 DLLARVIQHEMDHLNGVMFVDRV 163 >gi|120436619|ref|YP_862305.1| peptide deformylase [Gramella forsetii KT0803] gi|158512448|sp|A0M3P3|DEF_GRAFK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|117578769|emb|CAL67238.1| peptide deformylase [Gramella forsetii KT0803] Length = 196 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 102/175 (58%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ + DP+L++ ++ I+K + LI+NM + MY+ G+GLAA Q+G+ R+ +ID Sbjct: 4 PIIAYGDPVLKKKAKDIDKDYPKLEELINNMWDTMYNAYGVGLAAPQVGLPVRMFMIDPA 63 Query: 65 --------DHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 D A +K M VFINP+II + + + EGCLSIP+ R DV R IT+ Sbjct: 64 PFADDEELDEAEKKVLMDLRKVFINPQIIEETGEEWAFSEGCLSIPEVREDVFRQPDITI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y D N + GL A +QHE DH+ GILF D LS LK+ +I K++ + + Sbjct: 124 EYHDENWEKHTETYSGLAARVIQHEYDHIEGILFTDKLSSLKKRLIKSKLANISK 178 >gi|56708685|ref|YP_170581.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110671157|ref|YP_667714.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] gi|134302737|ref|YP_001122705.1| peptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|156501451|ref|YP_001427516.1| peptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010290|ref|ZP_02275221.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC200] gi|254368481|ref|ZP_04984498.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC022] gi|254371316|ref|ZP_04987318.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC033] gi|254875560|ref|ZP_05248270.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|295312318|ref|ZP_06803105.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|56605177|emb|CAG46308.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321490|emb|CAL09691.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] gi|134050514|gb|ABO47585.1| Peptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|151569556|gb|EDN35210.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC033] gi|156252054|gb|ABU60560.1| peptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121375|gb|EDO65576.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC022] gi|254841559|gb|EET19995.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] Length = 174 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 5/162 (3%) Query: 9 FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R + + D+ Sbjct: 10 YPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFFI--MYDN 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +NP + + + +EGCLS P A V R+ + ++ ++ + + Sbjct: 68 LEEQNPEIITIINPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFGEEIEVE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 128 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQ 169 >gi|89255517|ref|YP_512878.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115314036|ref|YP_762759.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|187930952|ref|YP_001890936.1| peptide deformylase [Francisella tularensis subsp. mediasiatica FSC147] gi|224457894|ref|ZP_03666367.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|254366945|ref|ZP_04982982.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] gi|290954254|ref|ZP_06558875.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|89143348|emb|CAJ78515.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115128935|gb|ABI82122.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|134252772|gb|EBA51866.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] gi|187711861|gb|ACD30158.1| peptide deformylase [Francisella tularensis subsp. mediasiatica FSC147] gi|282159936|gb|ADA79327.1| peptide deformylase [Francisella tularensis subsp. tularensis NE061598] Length = 172 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 5/162 (3%) Query: 9 FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R + + D+ Sbjct: 8 YPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFFI--MYDN 65 Query: 67 AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +NP + + + +EGCLS P A V R+ + ++ ++ + + Sbjct: 66 LEEQNPEIITIINPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFGEEIEVE 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 126 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQ 167 >gi|150025801|ref|YP_001296627.1| peptide deformylase [Flavobacterium psychrophilum JIP02/86] gi|158513727|sp|A6H0E7|DEF_FLAPJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149772342|emb|CAL43820.1| Peptide deformylase [Flavobacterium psychrophilum JIP02/86] Length = 194 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+V + DP+LR+V I K ++ I NM E MY+ G+GLAA Q+G+ RL ++D Sbjct: 4 PIVGYGDPVLRKVCEEITKDYINLEETIANMYETMYNACGVGLAAPQVGLPIRLFIVDAD 63 Query: 64 -----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + A + FIN K++ + + EGCLSIPD R DV R+ IT+ Sbjct: 64 PFSDSDDISKEEAAALKGFKKTFINAKMLKEEGEEWSFSEGCLSIPDVREDVYRNPNITI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y D N + +GL+A +QHE DH+ G+LF D ++ K+ I KK+ +++ Sbjct: 124 EYYDENFNKKTEEYNGLIARVIQHEYDHIEGVLFTDKITVFKKQFIKKKLQNIME 178 >gi|308234578|ref|ZP_07665315.1| peptide deformylase [Atopobium vaginae DSM 15829] Length = 183 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/168 (41%), Positives = 92/168 (54%), Gaps = 8/168 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K +V P IL+ V P+++I +I +L +M EVMY+TDG GLAA QIG RLVVID Sbjct: 8 KEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVIDC 67 Query: 64 Q-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + RK P V +NPKI+ + EGCLS P VKR + + ++ + Sbjct: 68 EWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGDLI 127 Query: 123 IIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A G LLA CLQHE DHL G+ DHL + KKM KL + + Sbjct: 128 RYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 169 >gi|257868125|ref|ZP_05647778.1| formylmethionine deformylase [Enterococcus casseliflavus EC30] gi|257874600|ref|ZP_05654253.1| formylmethionine deformylase [Enterococcus casseliflavus EC10] gi|325567766|ref|ZP_08144377.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] gi|257802239|gb|EEV31111.1| formylmethionine deformylase [Enterococcus casseliflavus EC30] gi|257808764|gb|EEV37586.1| formylmethionine deformylase [Enterococcus casseliflavus EC10] gi|325158539|gb|EGC70686.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] Length = 163 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 103/164 (62%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LRR ++P++ I +++ L+D++ E M + DGIG+AA Q+G ++ ++ Sbjct: 1 MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++++ + INP+II S + S+ EGCLSIP VKR+ ITVRY D + Sbjct: 61 EVEE----DDRFEMINPEIIASSGE-SLDVEGCLSIPHTFGTVKRADEITVRYFDREGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 + A G LA +QHE+DHLNG+LF+D L R+ + + K M + Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKLVERIPEEDLEKYMEE 159 >gi|229828535|ref|ZP_04454604.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM 14600] gi|229793129|gb|EEP29243.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM 14600] Length = 160 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 62/148 (41%), Positives = 91/148 (61%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DPIL++V RP+ K++ LID+MLE MY +G+GLAA Q+GVL R+VV Sbjct: 1 MAIREIRIDGDPILKKVCRPVSKLSDRQQELIDDMLETMYEANGVGLAAPQVGVLRRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V +NP+ IT D + +EGCLS+P A V R + R +D N + Sbjct: 61 IDVGE-----GPLVMVNPE-ITEKDGEQIGEEGCLSVPGKAAIVTRPEHVIARALDRNMK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + GLLA + HELDHL+G ++ + Sbjct: 115 EFSVEGTGLLARAICHELDHLDGHMYTE 142 >gi|307722030|ref|YP_003893170.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294] gi|306980123|gb|ADN10158.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294] Length = 174 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 98/163 (60%), Gaps = 4/163 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PD LR+ S +++ ++ + L+D M +M +T+GIGLAA+Q+ R +++++ D Sbjct: 5 IVEYPDKTLRKKSCEVKEFDASLHKLLDAMNPLMINTNGIGLAAIQVAYPIRALILNVPD 64 Query: 66 HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P + INP ++T + YQEGCLS+P + D+KR + + Y D + Sbjct: 65 EDGEQPPENLLEIINP-VMTHKSGETTYQEGCLSVPQFYEDIKRYDNVVINYQDRYGNTK 123 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + ADGLLA +QHE+DHL GILFID LS +R K+ ++ Sbjct: 124 TLDADGLLAIAIQHEMDHLEGILFIDKLSYARRKKFEKEYKRM 166 >gi|301168570|emb|CBW28160.1| peptide deformylase [Bacteriovorax marinus SJ] Length = 197 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 15/160 (9%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 + +P P+L++V+ P+ + + D+ L +ML MY GIGLAA QIG RL V+D+ Sbjct: 19 IFTYPAPVLKKVAEPVTEFDDDLRALCKDMLFTMYHAPGIGLAAPQIGKSIRLFVMDIDY 78 Query: 64 -QDHAHRK-----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 ++ R NPM+FINP +I+ +Y+EGCLS+P +VKR+ IT Sbjct: 79 DREEVTRADGSSEHVLSNFNPMIFINP-VISNKHGEILYEEGCLSVPGIYEEVKRAKTIT 137 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V Y D + I AD LL+ CLQHE DHL GI+F++ LS Sbjct: 138 VDYQDMWGEKHSIDADELLSICLQHENDHLEGIVFLERLS 177 >gi|260424655|ref|ZP_05732837.2| peptide deformylase [Dialister invisus DSM 15470] gi|260402717|gb|EEW96264.1| peptide deformylase [Dialister invisus DSM 15470] Length = 161 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 4/150 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ DPIL+ V+ P+ + + L++ M + MY ++G+GLAA QI V R+ V D + Sbjct: 11 IITAGDPILKSVAMPVTAFDKKLKFLVNEMKKTMYESNGVGLAAPQIAVSKRVFVADDGE 70 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +INP+ D+ EGCLS+P++ +V+R A +TV+Y D + + + Sbjct: 71 SGFE----AYINPRWTPDGDEKVTDTEGCLSVPNWYGEVERYANVTVKYQDIHGKRKQKK 126 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLLA C+QHE DHLNGILFI+ + L + Sbjct: 127 ATGLLARCIQHETDHLNGILFIEKANSLHK 156 >gi|315224454|ref|ZP_07866281.1| peptide deformylase [Capnocytophaga ochracea F0287] gi|314945475|gb|EFS97497.1| peptide deformylase [Capnocytophaga ochracea F0287] Length = 196 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 91/175 (52%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ + DP+LR+V I + LI NM + M + G+GLAA Q+G+ RL V+D Sbjct: 4 PIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVVDAS 63 Query: 65 DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + FIN KI+ + D + EGCLSIP R DV R IT+ Sbjct: 64 PFADDDELSEDEQTFLKGFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQITI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y D + Q + GL A +QHE DH+ GILF D LS KR +I K++ + + Sbjct: 124 EYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISK 178 >gi|328944367|ref|ZP_08241830.1| peptide deformylase [Atopobium vaginae DSM 15829] gi|327491082|gb|EGF22858.1| peptide deformylase [Atopobium vaginae DSM 15829] Length = 187 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/168 (41%), Positives = 92/168 (54%), Gaps = 8/168 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K +V P IL+ V P+++I +I +L +M EVMY+TDG GLAA QIG RLVVID Sbjct: 12 KEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVIDC 71 Query: 64 Q-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + RK P V +NPKI+ + EGCLS P VKR + + ++ + Sbjct: 72 EWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGDLI 131 Query: 123 IIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A G LLA CLQHE DHL G+ DHL + KKM KL + + Sbjct: 132 RYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 173 >gi|238924698|ref|YP_002938214.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|259645181|sp|C4ZEV9|DEF_EUBR3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238876373|gb|ACR76080.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|291526147|emb|CBK91734.1| peptide deformylase [Eubacterium rectale DSM 17629] gi|291527119|emb|CBK92705.1| peptide deformylase [Eubacterium rectale M104/1] Length = 158 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 6/157 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+L +V R + ++ I+ LID+MLE MY +G+GLAA Q+G+L R+VV Sbjct: 1 MALRTIRVEGDPVLGKVCREVTEVTPKIVTLIDDMLETMYEANGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+II SD EGCLS+P V R ++ R+M + Sbjct: 61 IDVGE-----GPIVMINPEIIE-SDGEQTGDEGCLSVPGKAGQVTRPNYVKARFMGEDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 I + LLA C+ HELDHL+G L+++ + D+ Sbjct: 115 EYEIEGEELLARCICHELDHLDGHLYVEKVEGALHDV 151 >gi|126700204|ref|YP_001089101.1| peptide deformylase 2 [Clostridium difficile 630] gi|254976176|ref|ZP_05272648.1| peptide deformylase 2 [Clostridium difficile QCD-66c26] gi|255093565|ref|ZP_05323043.1| peptide deformylase 2 [Clostridium difficile CIP 107932] gi|255307617|ref|ZP_05351788.1| peptide deformylase 2 [Clostridium difficile ATCC 43255] gi|255315309|ref|ZP_05356892.1| peptide deformylase 2 [Clostridium difficile QCD-76w55] gi|255517977|ref|ZP_05385653.1| peptide deformylase 2 [Clostridium difficile QCD-97b34] gi|255651093|ref|ZP_05397995.1| peptide deformylase 2 [Clostridium difficile QCD-37x79] gi|260684158|ref|YP_003215443.1| peptide deformylase 2 [Clostridium difficile CD196] gi|260687817|ref|YP_003218951.1| peptide deformylase 2 [Clostridium difficile R20291] gi|115251641|emb|CAJ69474.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2 ) [Clostridium difficile] gi|260210321|emb|CBA64646.1| peptide deformylase 2 [Clostridium difficile CD196] gi|260213834|emb|CBE05821.1| peptide deformylase 2 [Clostridium difficile R20291] Length = 146 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 96/152 (63%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +EKI+ I+ L+D+M E MY DG+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II S + + +EGCLS+ +V+R ++ VR ++ N + Sbjct: 61 IDIGEEL-----IELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA HE+DHL+GILF+D + + Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146 >gi|304382925|ref|ZP_07365407.1| peptide deformylase [Prevotella marshii DSM 16973] gi|304335950|gb|EFM02198.1| peptide deformylase [Prevotella marshii DSM 16973] Length = 186 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 98/172 (56%), Gaps = 7/172 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+V++ I D+ LI NM E M S+DGIGLAA QIG R+VVIDL Sbjct: 4 PIYVYGQPVLRKVAQDISSDYPDLQELIANMFETMDSSDGIGLAAPQIGKSIRVVVIDLN 63 Query: 65 ----DHAHRKN-PMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D K+ +INP I+ + + + +EGCLSIP V R + I V Y+D Sbjct: 64 VLSDDFPEYKDFRKAYINPHILEIDETSEKRLMEEGCLSIPGLHEKVPRFSRIHVTYLDE 123 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL G +F+DH+S L++ +I K+ L Q R Sbjct: 124 AFVSHDEWVEGYLARVMQHEFDHLEGKMFVDHISPLRKQLIKNKLKALTQGR 175 >gi|52080175|ref|YP_078966.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|52785552|ref|YP_091381.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|319646045|ref|ZP_08000275.1| def protein [Bacillus sp. BT1B_CT2] gi|52003386|gb|AAU23328.1| polypeptide deformylase [Bacillus licheniformis ATCC 14580] gi|52348054|gb|AAU40688.1| Def [Bacillus licheniformis ATCC 14580] gi|317391795|gb|EFV72592.1| def protein [Bacillus sp. BT1B_CT2] Length = 160 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+V +P +L + P+ + + L+DNM + M DG+GLAA QIGV R V Sbjct: 1 MAVKPIVTYPAEVLETPAEPVASFDKSLKKLLDNMYDTMLELDGVGLAAPQIGVSKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + +NP++I S + EGCLS PD +VKRS ++ V+ D + Sbjct: 61 VDIGDDTGR---IELVNPEVIEESGE-QTGPEGCLSFPDLYGEVKRSDYVKVKAFDRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A+G LA L HE+DHL+GILF ++R Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFTSKVTR 148 >gi|295094723|emb|CBK83814.1| peptide deformylase [Coprococcus sp. ART55/1] Length = 155 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 5/138 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+V RP+EK++ + LID+M + MY +G+GLAA Q+G+L R+VVID+ D Sbjct: 11 DDILRKVCRPVEKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVVIDVGD----D 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 NP+ INP +IT SD +EGCLS+P V R + + D N + + +GLL Sbjct: 67 NPLCLINP-VITESDGEQTGEEGCLSLPGKFGTVTRPMHVICKAFDENMEEFTVEGEGLL 125 Query: 131 ATCLQHELDHLNGILFID 148 A + HELDHL+G L+ D Sbjct: 126 ARAICHELDHLDGKLYKD 143 >gi|153808041|ref|ZP_01960709.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185] gi|149129650|gb|EDM20864.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185] Length = 184 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 96/168 (57%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+V I L Sbjct: 4 PIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ K +INP I+ + +EGCLS+P VKR I V+YMD + Sbjct: 64 PLSEDYPEFKGFNKAYINPHILEIGGEEVSMEEGCLSLPGIHETVKRGNKIRVKYMDEDF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ Sbjct: 124 VEHEEEVEGYLARVMQHEFDHLDGKMFIDHISALRKQMIKGKLNTMLK 171 >gi|213963665|ref|ZP_03391916.1| peptide deformylase [Capnocytophaga sputigena Capno] gi|213953660|gb|EEB64991.1| peptide deformylase [Capnocytophaga sputigena Capno] Length = 193 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 94/175 (53%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ + DP+LR+V I ++ LI NM + M G+GLAA Q+G+ RL V+D Sbjct: 4 PIIGYGDPVLRKVGEDITPDYPELKALIANMYDTMRHAYGVGLAAPQVGLAIRLFVVDAS 63 Query: 65 DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + FIN KI + D + EGCLSIP R DV R IT+ Sbjct: 64 PFAEDDDLTAEEQAFLKTFQKTFINAKITEETGDKWNFNEGCLSIPGVREDVSRHKQITI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y+D + + Q + DGL A +QHE DH+ GILF D LS K+ +I K++ +++ Sbjct: 124 EYLDEDFKPQTLTLDGLAARIVQHEYDHIEGILFTDKLSAFKKQLIKTKLNNIMK 178 >gi|256819049|ref|YP_003140328.1| peptide deformylase [Capnocytophaga ochracea DSM 7271] gi|256580632|gb|ACU91767.1| peptide deformylase [Capnocytophaga ochracea DSM 7271] Length = 196 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 91/175 (52%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ + DP+LR+V I + LI NM + M + G+GLAA Q+G+ RL V+D Sbjct: 4 PIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVVDAS 63 Query: 65 DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + FIN KI+ + D + EGCLSIP R DV R IT+ Sbjct: 64 PFADDDELSEEEQTFLKDFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQITI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y D + Q + GL A +QHE DH+ GILF D LS KR +I K++ + + Sbjct: 124 EYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISK 178 >gi|160901540|ref|YP_001567121.1| peptide deformylase [Petrotoga mobilis SJ95] gi|160359184|gb|ABX30798.1| peptide deformylase [Petrotoga mobilis SJ95] Length = 178 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR+ ++ +E + ++ +++D M MY DG+GLAA Q+G+ R ++D ++ + K Sbjct: 8 DPVLRKRAKKVENFDDNLKDVVDEMFSTMYLYDGVGLAAPQVGISLRFFIMDSREE-NEK 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 V INP+II F + ++EGCLSIPD DV R + VRY D + G Sbjct: 67 GKKVVINPEIIEFLGEEVSFEEGCLSIPDIFEDVVRPEGVRVRYQDLSGNVIEEELHGYQ 126 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A QHE DHL GILF D L +K+ + K++++L++ Sbjct: 127 ARIFQHETDHLEGILFTDKLPIVKKARLKKELNQLIE 163 >gi|291167035|gb|EFE29081.1| peptide deformylase [Filifactor alocis ATCC 35896] Length = 147 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+VSRP+ ++ I LI +M++ MY DG+GLAA Q+GVL R++VID+ + Sbjct: 11 DEVLRKVSRPVTEMTPRIEQLIGDMIDTMYQYDGVGLAAPQVGVLRRVIVIDIGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 PMVFINP+I+ + QEGCLSIP DVKR + V + + + D LL Sbjct: 66 GPMVFINPEIVE-QEGEQCGQEGCLSIPGVYMDVKRPNHVVVTAKNEKMEDIRVEGDELL 124 Query: 131 ATCLQHELDHLNGILFIDHLSR 152 A L HE+DHLNGILF D R Sbjct: 125 ARALCHEIDHLNGILFKDIAER 146 >gi|294673344|ref|YP_003573960.1| peptide deformylase [Prevotella ruminicola 23] gi|294473242|gb|ADE82631.1| peptide deformylase [Prevotella ruminicola 23] Length = 186 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 6/171 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ IF P+LR+V+ I + +LI +M E + ++GIGLAA QIG RLVVIDL Sbjct: 4 PIYIFGQPVLRKVAEDITPDYPQLKDLIGDMWETLAESEGIGLAAPQIGKPIRLVVIDLD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D K VFIN I+ + + + V +EGCLSIP V R I V + D N Sbjct: 64 VLSDDLPEYKGFKQVFINAHIVEYDESNTDVSEEGCLSIPAIHEKVTRPTRIHVEWDDEN 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +H + +G LA +QHE DHL+G +F+D +S L++ +I K+ L Q R Sbjct: 124 FEHHDEWVEGYLARVMQHEFDHLDGKMFVDRISPLRKQLIKSKLRALTQGR 174 >gi|218439032|ref|YP_002377361.1| peptide deformylase [Cyanothece sp. PCC 7424] gi|218171760|gb|ACK70493.1| peptide deformylase [Cyanothece sp. PCC 7424] Length = 187 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 87/141 (61%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I K++ + L ML+ MYS++GIGLAA Q+ V +L+VID + Sbjct: 24 DRVLRQPAKRIAKVDESVRQLAKEMLQTMYSSNGIGLAAPQVAVNKQLLVIDCEPDNPAN 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+I S + ++EGCLSIP DV R I V Y D + + + + A LL Sbjct: 84 PPLILINPQITQSSQELCQFEEGCLSIPGVYLDVVRPKVIEVSYKDESGRPKKLKATDLL 143 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A +QHE+DHLNGI+F+D + Sbjct: 144 ARVIQHEMDHLNGIMFVDRVG 164 >gi|77920127|ref|YP_357942.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380] gi|77546210|gb|ABA89772.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380] Length = 167 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 105/169 (62%), Gaps = 12/169 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPI----EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M K ++++P P L+ + P+ E ++S I +LID M+ +S +G+AA QIG+ Sbjct: 1 MAVKDILLYPHPALKEICTPVTQCDENVDSLIQDLIDTMVAAGHS---VGVAAPQIGITR 57 Query: 57 RLVVIDLQDH--AHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 R+VV+D+ ++N +V INP+I+ + + +EGC+S+PDY +V R+ + V Sbjct: 58 RVVVVDVSHSKLGRKENHGLIVMINPEILE-QEGRTASREGCMSVPDYTGNVTRAESVVV 116 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 +Y+D + Q+I A G A LQHE+DHL+G+LF+D +S LK D+ +K Sbjct: 117 QYLDRSGNKQVIRATGFEAIALQHEIDHLDGLLFLDRVSSLKTDLFRRK 165 >gi|327312425|ref|YP_004327862.1| peptide deformylase [Prevotella denticola F0289] gi|326944165|gb|AEA20050.1| peptide deformylase [Prevotella denticola F0289] Length = 214 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 95/174 (54%), Gaps = 16/174 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVIDL Sbjct: 32 PIYTYGQPVLRKVAADIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVIDLD 91 Query: 64 ---------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113 +D H FIN I+ D + +EGCLS+P V R+ I V+ Sbjct: 92 VLSDTFPEYKDFRH-----AFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVK 146 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y+D N + DG LA +QHE DHL+G +F DHLS +R MI+ K+ L+Q Sbjct: 147 YLDENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQ 200 >gi|255101749|ref|ZP_05330726.1| peptide deformylase 2 [Clostridium difficile QCD-63q42] Length = 146 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 97/152 (63%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +EKI+ I+ L+D+M E MY DG+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + INP+II S + + +EGCLS+ +V+R ++ VR ++ N + Sbjct: 61 IDIGE-----DLIELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA HE+DHL+GILF+D + + Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146 >gi|169831745|ref|YP_001717727.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C] gi|238688341|sp|B1I504|DEF_DESAP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169638589|gb|ACA60095.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C] Length = 154 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 4/146 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR +R + KI I L N+++ M + G+GLAA QIGV R++V++ + Sbjct: 6 IVQYPDPILREKAREVRKITPQIERLAVNLVDTMRRSGGVGLAAPQIGVSKRVIVVEDPE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 KNP+V INP+I+ D +EGCLS+P V+R +TVR + + Sbjct: 66 ----KNPIVLINPEIVRLEGDKETAEEGCLSVPGVWGQVERRMCLTVRGYNLEGKQVAYL 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 +G A QHE+DHL+GI+F+D + Sbjct: 122 VEGFTARAFQHEIDHLDGIVFLDRAT 147 >gi|332666752|ref|YP_004449540.1| peptide deformylase [Haliscomenobacter hydrossis DSM 1100] gi|332335566|gb|AEE52667.1| Peptide deformylase [Haliscomenobacter hydrossis DSM 1100] Length = 183 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 94/166 (56%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-L 63 P+ + P+LR+ + I D+ LI +M E MY +G+GLAA QIG RL +ID + Sbjct: 4 PIYAYGHPVLRKKAEDITPDYEDLSKLIADMWETMYHAEGVGLAAPQIGRPIRLFIIDSI 63 Query: 64 QDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 Q K+ VFIN + + Y+EGCLSIPD R DV R +T+RY+D N Sbjct: 64 QLEEKGKDVIGLKTVFINAEKVEEKGKIWAYEEGCLSIPDIRGDVDRLDTLTLRYLDENF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 I DG+ A +QHE DH+ GILF+++L +K+ MI ++ + Sbjct: 124 VEHITTFDGINARVIQHEYDHIEGILFLEYLKPVKKAMIRGRLENI 169 >gi|295698622|ref|YP_003603277.1| peptide deformylase [Candidatus Riesia pediculicola USDA] gi|291157320|gb|ADD79765.1| peptide deformylase [Candidatus Riesia pediculicola USDA] Length = 151 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 58/144 (40%), Positives = 94/144 (65%), Gaps = 2/144 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+V++P++ I S+I +L+ NM ++MY GIGLAA Q+ + R+VVI++ Sbjct: 10 YPDSRLRKVAKPVKLITSEIKDLVRNMFKIMYEKGGIGLAATQVNIHQRIVVINISQR-E 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +K+ + INP I++ S+ +E CLS+ + + RS FI V+ + + I +A G Sbjct: 69 KKDELTLINPIILSSHGVISL-EERCLSVSNRAGCILRSKFIEVKTKSLSGKEFIFHAKG 127 Query: 129 LLATCLQHELDHLNGILFIDHLSR 152 LL+ C+QHE+DHL+G LFID+L + Sbjct: 128 LLSVCIQHEVDHLDGKLFIDYLRK 151 >gi|146276207|ref|YP_001166366.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] gi|145554448|gb|ABP69061.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] Length = 167 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P V++PD L+ + P++ + +I + D+M+E M + G GLA QIGV+ RL V+D Sbjct: 3 RPFVMYPDKRLKTAAAPVDAVTDEIHAIWDDMVETMDAMPGYGLAGPQIGVMLRLAVVDC 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D R + NP+I+ S F ++EG ++P A + R +TVR+++ + + Sbjct: 63 SD--SRGKAIRLANPEILHASGQFREHEEGSPNLPGATAVISRPRAVTVRFLNTAGEMEE 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + AT +QH++DHLNG L+IDHLS LKR M+ K K ++ Sbjct: 121 RDFVDIWATSVQHQIDHLNGKLYIDHLSALKRKMVIAKSEKYLR 164 >gi|254375239|ref|ZP_04990719.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548] gi|151572957|gb|EDN38611.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548] Length = 174 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 5/162 (3%) Query: 9 FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R + + D+ Sbjct: 10 YPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFFI--MYDN 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +NP + + +EGCLS P A V R+ + ++ ++ I Sbjct: 68 LEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFGDEIEIE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 128 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQ 169 >gi|237736610|ref|ZP_04567091.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817] gi|229420472|gb|EEO35519.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817] Length = 169 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 4/157 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + + +LR V++ +E I+++I+ ++DNM+E M+ G+GLAA Q+G+ R+ V D D Sbjct: 8 YGEAVLREVAQEVENIDNEILEILDNMVETMHEAKGVGLAAPQVGISKRMFVCDQGDGVV 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 RK INP I +D ++EGCLS+P V+R I + Y++ + +G Sbjct: 68 RK----VINPIITPMTDKLMDFEEGCLSVPGIYKKVQRPEKIKIDYLNEKGEKVSEEVEG 123 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LA +QHE DHL+ +LF+D +S + + MI KK+ L Sbjct: 124 FLAIIMQHEFDHLDAVLFVDKISPMAKRMINKKLQML 160 >gi|300813955|ref|ZP_07094254.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511929|gb|EFK39130.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 166 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 97/159 (61%), Gaps = 4/159 (2%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D ILR+ S+ +E N + L+D+M E M S DG+GLAA Q+G+L RL+V+D +D + Sbjct: 10 EDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIVVDDRDEEN- 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 ++ INP +IT + V +EGCLSIP + DVKR+ I V Y + + + I + Sbjct: 69 QHRFYLINP-VITRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGKEEKINCEDF 127 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LA +QHE+DHL+GIL+ D ++ R I +K L +L Sbjct: 128 LARIIQHEIDHLDGILYTDRAEKMYR--IVQKDDNLEEL 164 >gi|291514572|emb|CBK63782.1| peptide deformylase [Alistipes shahii WAL 8301] Length = 181 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 7/169 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI+ D +LRR PI D+ L ++M + +G+GLAA QIG RL ++D Sbjct: 4 PIVIYGDEVLRRKCEPIAPDYPDVKKLAEDMFLTLEEAEGVGLAAPQIGKDIRLFIVDCT 63 Query: 65 DHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 A ++P F+NP+I FS++ Y EGCLS P ADV RS I +RYMD + Sbjct: 64 PWAE-EDPSCADYKRAFVNPEIYEFSEEKKTYNEGCLSFPGIHADVARSLSIRMRYMDTD 122 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 GL A +QHE DH+ G++F D ++ L+R ++ K+ L + Sbjct: 123 FVEHDEEFTGLKAWVIQHEYDHIEGVVFTDRIAPLRRQLLKSKLLNLAK 171 >gi|303271927|ref|XP_003055325.1| peptide deformylase [Micromonas pusilla CCMP1545] gi|226463299|gb|EEH60577.1| peptide deformylase [Micromonas pusilla CCMP1545] Length = 210 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 5/163 (3%) Query: 5 PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL I +P LR ++ I ++++ L D M MY +DG+GLAA Q+GV YRL+V + Sbjct: 36 PLEIQKYPSAKLRDENKKIGVFDAELKKLADAMFAKMYESDGVGLAAPQVGVNYRLMVYN 95 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + +V +NPKI+ FS + +++EGCLS P ADV+R +T+ + N + Sbjct: 96 EAGERGKGAEVVMVNPKIVKFSKEKDMFEEGCLSFPAIYADVERPTAVTIEAQNVNGKKF 155 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + DG A QHE DHL+G+LF D R+ D++ K ++L Sbjct: 156 KMTLDGFQARVFQHEYDHLDGVLFHD---RMAADVVAKVRAEL 195 >gi|150396253|ref|YP_001326720.1| peptide deformylase [Sinorhizobium medicae WSM419] gi|150027768|gb|ABR59885.1| peptide deformylase [Sinorhizobium medicae WSM419] Length = 163 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +P+ L + P+ + + + L ++++ M + GIG+ A IG+L RL V Sbjct: 1 MAVRSIIRYPNAALATATEPVSRFDESLRQLAHDLIDTMRAAPGIGITAPHIGILQRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ A P F+NP+I+ S D + + EG +S+P +V+R A + VR+ + Sbjct: 61 IETDPQA---GPRSFVNPEILWQSADSTRHSEGSVSMPGIAEEVERPARVRVRFQTLEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A GL+A CLQHE+D L+GI +I LSRLKR+ K+ KL Sbjct: 118 THEEEAAGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAIKRFEKL 162 >gi|322378951|ref|ZP_08053365.1| peptide deformylase [Helicobacter suis HS1] gi|322379805|ref|ZP_08054102.1| peptide deformylase [Helicobacter suis HS5] gi|321147773|gb|EFX42376.1| peptide deformylase [Helicobacter suis HS5] gi|321148627|gb|EFX43113.1| peptide deformylase [Helicobacter suis HS1] Length = 172 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 LV +PD LR +S +E ++ + L+++M E M + GIGLAA+Q+GV R+++I+L Sbjct: 7 LVHYPDKRLRGLSTEVEVFDTALHTLLEDMQETMLANKGIGLAAIQVGVAKRILIINLPR 66 Query: 66 HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 ++ P + INP ++ ++ +++EGCLS+P++ +++R A + + Y D Q Sbjct: 67 QDEQQYPEDCLEIINPTLL-HAEGQILWREGCLSVPEFYEEIQRFARVKLAYCDRYGDPQ 125 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A LL+ +QHE+DHLNGILF+D LS LKR K+ K Sbjct: 126 ELQASDLLSVAIQHEIDHLNGILFVDRLSMLKRKKFEKEFRK 167 >gi|315644089|ref|ZP_07897259.1| peptide deformylase [Paenibacillus vortex V453] gi|315280464|gb|EFU43753.1| peptide deformylase [Paenibacillus vortex V453] Length = 172 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 96/151 (63%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M K +V F DPILR+V+RP++ +N+ + ++D+M E +Y + G GLAA QIG+L RL+ Sbjct: 1 MTVKAIVPFGDPILRKVARPVDPVNARALKILDDMAETLYDSAGRAGLAAPQIGILRRLI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + + INP+I+ + + V E CLS P Y V+R+ + V+ ++ Sbjct: 61 VMDCGE-----GLIELINPEIVEMNGE-QVGPEACLSYPGYYGYVQRAHHVKVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I+ + LA C+QHE+DHLNG+LF+DH+ Sbjct: 115 ETIILEGEDYLARCMQHEIDHLNGLLFVDHV 145 >gi|315185956|gb|EFU19720.1| peptide deformylase [Spirochaeta thermophila DSM 6578] Length = 163 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 4/150 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D LR+ + + +I+ + +++ M ++M+ +GIGLAA Q+G+ R + H Sbjct: 8 DETLRKRAVLVPEIDGRLARVVEGMFDLMHEANGIGLAAPQVGISQRFFIC----HVPEG 63 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+VFINP+I S + + ++EGCLSIP ADV R A + V + + + ADGLL Sbjct: 64 EPLVFINPEITATSPELATFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRMEADGLL 123 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A +QHE DHLNG+LF+D L KR+ + + Sbjct: 124 ARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153 >gi|146300287|ref|YP_001194878.1| peptide deformylase [Flavobacterium johnsoniae UW101] gi|189083071|sp|A5FGV5|DEF_FLAJO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146154705|gb|ABQ05559.1| peptide deformylase [Flavobacterium johnsoniae UW101] Length = 196 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DP+LR+V I ++ I NM E MY+ G+GLAA Q+G+ R+ VID Sbjct: 4 PIVGYGDPVLRKVGTAITPDYPNLKETIANMYETMYNAYGVGLAAPQVGLPIRIFVIDTT 63 Query: 65 DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + ++ FIN KI+ + + EGCLSIPD R DV R +T+ Sbjct: 64 PFSDDEDLPADEQKDLKGFKRTFINAKIVKEEGEEWSFNEGCLSIPDVREDVYRKPTVTI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y + + + DGL+A +QHE DH+ G+LF D +S LK+ +I KK+ + + Sbjct: 124 EYCEEDFVMKTEVFDGLIARVIQHEYDHIEGVLFTDKISSLKKRLIQKKLKNITE 178 >gi|253699291|ref|YP_003020480.1| peptide deformylase [Geobacter sp. M21] gi|251774141|gb|ACT16722.1| peptide deformylase [Geobacter sp. M21] Length = 172 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 99/161 (61%), Gaps = 1/161 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +PDP L++ S P+ I L +M E MY G+GLAA QIGV R++VID+ Sbjct: 3 RTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVIDV 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V INP+I+ ++ + +EGCLS+P + A+V+R A I V+ ++ + + Sbjct: 63 SGKDETPELIVAINPEIV-HAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLDGEEVT 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LL+ QHE+DHL+G+LFIDHLS LK+ + K+ + Sbjct: 122 FRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQR 162 >gi|315924512|ref|ZP_07920733.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622216|gb|EFV02176.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263] Length = 172 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 65/148 (43%), Positives = 88/148 (59%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L + DPILR+ +R I +IN I L +MLE MY DG+GLAA Q+GVL +LVV Sbjct: 1 MAIRKLRYYDDPILRKRAREITEINDRIKTLAADMLETMYDDDGVGLAAPQVGVLRQLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+I++ S V EGCLS PD V+R ++T R+ + Q Sbjct: 61 IDVG-----QGPITMINPEIVSQSGSI-VDSEGCLSFPDEAGYVERPEYVTARFTNLEGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + LLA + HELDHL G +FID Sbjct: 115 RCEVKGHMLLARAICHELDHLKGEVFID 142 >gi|149370599|ref|ZP_01890288.1| peptide deformylase [unidentified eubacterium SCB49] gi|149356150|gb|EDM44707.1| peptide deformylase [unidentified eubacterium SCB49] Length = 196 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 97/171 (56%), Gaps = 12/171 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + P+L+++++ I+K ++ L+ NM E MY+ G+GLAA QIG+ R+ ++D Sbjct: 4 PIVAYGAPVLKKLAKDIDKDYPELDELLANMYETMYNASGVGLAAPQIGLPIRIFIVDAS 63 Query: 65 --------DHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 D A ++ FIN KII + D + EGCLSIPD R DV R I + Sbjct: 64 PFSDDDELDPAEQEFLSTFKQTFINAKIIEETGDEWAFNEGCLSIPDVREDVFRKPDIVI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Y D + + GL A +QHE DH+ GILF D LS+LK+ +I +++ Sbjct: 124 EYYDEDFKKHTEKFTGLAARVIQHEYDHIEGILFTDKLSQLKKRLIKRRLE 174 >gi|110799951|ref|YP_696430.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|168210623|ref|ZP_02636248.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|168214221|ref|ZP_02639846.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|168217031|ref|ZP_02642656.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] gi|169342685|ref|ZP_02863726.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|110674598|gb|ABG83585.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|169299191|gb|EDS81261.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|170711284|gb|EDT23466.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|170714299|gb|EDT26481.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|182380902|gb|EDT78381.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] Length = 147 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 4/139 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+ R ++ IN I L+++M+E MY +G+GLAA Q+G+L R+ V+D D A + Sbjct: 11 DEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGSR 70 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 VFINP+I+ S + +EGCLS+P VKR+ I ++ +D N ++ A+ L Sbjct: 71 ---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFL 126 Query: 131 ATCLQHELDHLNGILFIDH 149 A +QHE DHL G+LFIDH Sbjct: 127 ARAIQHEYDHLEGVLFIDH 145 >gi|331269686|ref|YP_004396178.1| peptide deformylase [Clostridium botulinum BKT015925] gi|329126236|gb|AEB76181.1| peptide deformylase [Clostridium botulinum BKT015925] Length = 156 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 6/149 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + D ILR+ + +++IN I+ LI++M E MY DG+GLAA QIGVL RLVVID+ + Sbjct: 13 VNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVVIDVGE-- 70 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P+ INP+II+ + Y EGCLS+P + V R + + ++ + I+ + Sbjct: 71 ---GPISLINPEIISSEGSQTDY-EGCLSLPGKQGKVTRPYKVVAKALNEKGEEVEIHGE 126 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRD 156 LLA + HELDHL+G+LF+D + + K + Sbjct: 127 ALLARAICHELDHLDGVLFMDKVVKGKEE 155 >gi|182411922|ref|YP_001816988.1| peptide deformylase [Opitutus terrae PB90-1] gi|238692904|sp|B1ZMD5|DEF_OPITP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|177839136|gb|ACB73388.1| peptide deformylase [Opitutus terrae PB90-1] Length = 192 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 94/180 (52%), Gaps = 19/180 (10%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64 +V + DP+LRR I + + L ML M GIGLAA QIG +L V+DL+ Sbjct: 5 IVHYNDPVLRRKGEKITAFDKALSQLAKEMLATMQEAAGIGLAAQQIGRPVQLCVVDLRR 64 Query: 65 ---------DHAHRKNPMVFINPKIITFSD-------DFSVYQEGCLSIPDYRADVKRSA 108 D A K P+ I P IIT + D + +EGCLS P R DV R Sbjct: 65 AEIDFTWELDGA--KPPLDLIMPMIITNPEITPDRETDVYLVEEGCLSFPKIRGDVPRPD 122 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ITVRY D + ++ DGLLA C+QHE+DHLNG+LFID + + R I + L ++ Sbjct: 123 AITVRYQDEHGTPHTLHCDGLLARCIQHEVDHLNGVLFIDRMEKKTRAAIDADVKTLAKI 182 >gi|197117031|ref|YP_002137458.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] gi|197086391|gb|ACH37662.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] Length = 172 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 98/161 (60%), Gaps = 1/161 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +PDP L++ S P+ I L +M E MY G+GLAA QIGV R++VID+ Sbjct: 3 RTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVIDV 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V INP+I+ ++ + +EGCLS+P + A+V+R A I V+ ++ + Sbjct: 63 SGKDETPELIVAINPEIV-HAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLEGEEVT 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LL+ QHE+DHL+G+LFIDHLS LK+ + K+ + Sbjct: 122 FRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQR 162 >gi|189461816|ref|ZP_03010601.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136] gi|189431410|gb|EDV00395.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136] Length = 184 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA Q+G+ R+VVI+L Sbjct: 4 PIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVINLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D K+ +INP I+ ++ +EGCLS+P VKR I V Y+D + Sbjct: 64 VLSEDMPEFKDFRRAYINPHILETGEELVSMEEGCLSLPGIHEAVKRPDKIHVTYLDEDM 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G LA +QHE DHL+G +FIDHLS L++ MI K++ +++ Sbjct: 124 NPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIKGKLNNMLK 171 >gi|325852042|ref|ZP_08171125.1| peptide deformylase [Prevotella denticola CRIS 18C-A] gi|325484598|gb|EGC87514.1| peptide deformylase [Prevotella denticola CRIS 18C-A] Length = 214 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 95/174 (54%), Gaps = 16/174 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVIDL Sbjct: 32 PIYTYGQPVLRKVAADIPLDYPDLQELIRNMFETNTASDGVGLAAPQIGKSIRVVVIDLD 91 Query: 64 ---------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113 +D H FIN I+ D + +EGCLS+P V R+ I V+ Sbjct: 92 VLSDTFPEYKDFRH-----AFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVK 146 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y+D N + DG LA +QHE DHL+G +F DHLS +R MI+ K+ L+Q Sbjct: 147 YLDENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQ 200 >gi|78355060|ref|YP_386509.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217465|gb|ABB36814.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 169 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 1/161 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +PD L IE+I +I L +M E MY DGIGLAA Q+G RL+V+D+ Sbjct: 3 REILTYPDRRLAIECEEIEEITDEIRQLAADMAETMYDADGIGLAAPQVGATCRLIVVDV 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 R++ +INP++ +EGCLS+P R+ V R+ + + D + Sbjct: 63 SGPEAREDLRTYINPRLELLEGKVDT-EEGCLSVPALRSKVTRTEKVRLHATDLDGNAVC 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I ADGLL+ CLQHE+DHL+G LFID +SRLKR + K+ K Sbjct: 122 IDADGLLSICLQHEIDHLDGTLFIDKISRLKRSLYDNKVKK 162 >gi|85700131|gb|ABC74515.1| polypeptide deformylase [Helicobacter pylori] gi|85700141|gb|ABC74520.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 100/160 (62%), Gaps = 4/160 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 + ILR +S+ + ++ + + +M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YSSKILRTISKEVVSFDAKLHQQLVDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68 Query: 67 -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ Sbjct: 69 VQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167 >gi|153010428|ref|YP_001371642.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] gi|151562316|gb|ABS15813.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] Length = 166 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 90/147 (61%), Gaps = 3/147 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V +PD LR V+ P+ + +SD+ L ++L+ M + GIG+ A +G+ RLVV Sbjct: 1 MTVRPIVSYPDKRLRAVAEPVTQFDSDLQELGTDLLDTMRAAPGIGITAPHVGISKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L P ++NP+I+ SD+ +QEG +S+P DV+R A I +RY D + Sbjct: 61 LELPTEL---TPKFYVNPEIVWASDEKIHHQEGSVSMPGVVDDVERHARIKIRYQDLSGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 Q ++GLLA C QHE+D L+GI +I Sbjct: 118 EQTEESEGLLAVCHQHEIDQLDGIFWI 144 >gi|147669331|ref|YP_001214149.1| peptide deformylase [Dehalococcoides sp. BAV1] gi|189083069|sp|A5FRA7|DEF_DEHSB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146270279|gb|ABQ17271.1| peptide deformylase [Dehalococcoides sp. BAV1] Length = 167 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 86/143 (60%), Gaps = 4/143 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 P+P+LR+ ++ + I+ I LID+M+E M S DG GLAA Q+GV RLVV D Sbjct: 9 LPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVVFREPD--- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 K V INP+II V EGCLSIP Y ++ R+ +T + +D + + I G Sbjct: 66 TKEATVLINPEIIKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGKACRIKGTG 124 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 ++A L+HE +HL+GIL+IDHL Sbjct: 125 IVAQLLEHETEHLDGILYIDHLE 147 >gi|310642740|ref|YP_003947498.1| peptide deformylase [Paenibacillus polymyxa SC2] gi|309247690|gb|ADO57257.1| Peptide deformylase [Paenibacillus polymyxa SC2] Length = 159 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 57/140 (40%), Positives = 88/140 (62%), Gaps = 6/140 (4%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAH 68 PD +L +V++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+V+D D H Sbjct: 4 PDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIVVDAGDEHGL 63 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 K INP+I+ + + EGCLSIP DV+R+ +TV+ ++ + + A G Sbjct: 64 IK----MINPEIVA-EEGEQLGPEGCLSIPGLNGDVRRAEKVTVKGLNREGKAITVTATG 118 Query: 129 LLATCLQHELDHLNGILFID 148 LL+ QHE+DHLNG+LF D Sbjct: 119 LLSRAFQHEIDHLNGVLFTD 138 >gi|254476440|ref|ZP_05089826.1| peptide deformylase [Ruegeria sp. R11] gi|214030683|gb|EEB71518.1| peptide deformylase [Ruegeria sp. R11] Length = 169 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 91/167 (54%), Gaps = 1/167 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V +PDP+L + P+ I +D+ L +ML+ MY G GLAA Q+GVL R+ V Sbjct: 1 MAVRPIVAWPDPVLSTPASPVIAI-TDVAALAQDMLDTMYGAPGRGLAAPQVGVLQRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + P++ INP+I SD EGCLSIP V+RS ++ + + D Sbjct: 60 MDTTWKDGTRAPLICINPEIKDRSDRHVSGPEGCLSIPGVSLTVERSEWVDLEWSDLQGV 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DG A C+QHE DHL+GI+ D +S + R K + V+ Sbjct: 120 RHCRRFDGFDAICIQHEYDHLDGIVTFDRVSAVARAEAEKTYNSYVE 166 >gi|146297087|ref|YP_001180858.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410663|gb|ABP67667.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 164 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 7/158 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 I+ D ILR+ S+ +EK + + +L+D+M E MY +GIGLAA Q+G+L R +V+D D A Sbjct: 6 IYEDEILRKKSKTVEKFDKRLHDLLDDMKETMYEANGIGLAAPQVGILKRAIVVDPGDGA 65 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + +NP+ I +S+ + EGCLS+P+ +V+R + VR + + + I A+ Sbjct: 66 -----IELVNPQ-IEYSEGSQIDIEGCLSVPNVWGEVERPKKVIVRGQNRHGEEIKIEAE 119 Query: 128 GLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164 LLA L HE+DHL+GILFID + R + + + KK SK Sbjct: 120 DLLARALCHEIDHLDGILFIDKVIRFVTEEEVEKKRSK 157 >gi|118496725|ref|YP_897775.1| peptide deformylase [Francisella tularensis subsp. novicida U112] gi|194324032|ref|ZP_03057807.1| peptide deformylase [Francisella tularensis subsp. novicida FTE] gi|208780004|ref|ZP_03247347.1| peptide deformylase [Francisella novicida FTG] gi|118422631|gb|ABK89021.1| peptide deformylase [Francisella novicida U112] gi|194321929|gb|EDX19412.1| peptide deformylase [Francisella tularensis subsp. novicida FTE] gi|208744008|gb|EDZ90309.1| peptide deformylase [Francisella novicida FTG] Length = 174 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 5/162 (3%) Query: 9 FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R + + D+ Sbjct: 10 YPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFFI--MYDN 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +NP + + +EGCLS P A V R+ + ++ ++ I Sbjct: 68 LEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFGDEIEIE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 128 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQ 169 >gi|168207271|ref|ZP_02633276.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|170661355|gb|EDT14038.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] Length = 147 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 4/139 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+ R ++ IN I L+++M+E MY +G+GLAA Q+G+L R+ V+D D A + Sbjct: 11 DEILRKKCRVVDDINDRIKILVEDMIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGSR 70 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 VFINP+I+ S + +EGCLS+P VKR+ I ++ +D N ++ A+ L Sbjct: 71 ---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFL 126 Query: 131 ATCLQHELDHLNGILFIDH 149 A +QHE DHL G+LFIDH Sbjct: 127 ARAIQHEYDHLEGVLFIDH 145 >gi|193213195|ref|YP_001999148.1| peptide deformylase [Chlorobaculum parvum NCIB 8327] gi|238692654|sp|B3QPU5|DEF_CHLP8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|193086672|gb|ACF11948.1| peptide deformylase [Chlorobaculum parvum NCIB 8327] Length = 187 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 100/168 (59%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ + DP+L ++P++ ++S I LI +M + MY GIGLAA Q+G RL+V+D+ Sbjct: 4 PINTYSDPVLTAKAKPLKGVDSSIRELIADMFDSMYKAPGIGLAAPQVGHSLRLLVVDIS 63 Query: 64 --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 +++A K PMV INP+I++ + + +EGCLS+P DV R + IT+ Y D + Sbjct: 64 TIKEYADYK-PMVVINPRIVSVAGR-NAMEEGCLSVPGVAGDVVRPSKITLHYRDEKFEE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++A LQHE+DHL+G LF+D + + R + K + + Q R Sbjct: 122 HTEEFSDMMARVLQHEIDHLDGTLFVDRMEKRDRRKVQKTLDAIKQGR 169 >gi|225028093|ref|ZP_03717285.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353] gi|224954563|gb|EEG35772.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353] Length = 158 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 58/136 (42%), Positives = 87/136 (63%), Gaps = 5/136 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP L +V +P++KI I LI++M + MY G+GLAA Q+G+L R+ VID+ D + Sbjct: 11 DPCLNKVCKPVQKITPSIETLIEDMFDTMYEARGVGLAAPQVGILRRICVIDVMD----E 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +P++ INP+II + + +EGCLSIP A V R+ ++ V+ D II +GL Sbjct: 67 DPIILINPEIIETAGE-QTDEEGCLSIPGKCASVTRADYVKVKSFDMELNPVIIEGEGLR 125 Query: 131 ATCLQHELDHLNGILF 146 A LQHE+DHL+G+L+ Sbjct: 126 ARALQHEIDHLDGVLY 141 >gi|57234458|ref|YP_181493.1| peptide deformylase [Dehalococcoides ethenogenes 195] gi|123759709|sp|Q3Z8F6|DEF_DEHE1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|57224906|gb|AAW39963.1| peptide deformylase [Dehalococcoides ethenogenes 195] Length = 167 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 4/143 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 P+PILR+ ++ + I+ I LID+M+E M S DG GLAA Q+GV RL+V D Sbjct: 9 LPEPILRKKAKKVPSIDGSIQTLIDDMIETMKSADGAGLAAPQVGVSLRLIVFREPDA-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 K V INP+I+ V EGCLSIP Y ++ R+ +T + +D + + I G Sbjct: 67 -KEATVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGKAFRIKGTG 124 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 ++A L+HE +HL+GIL+IDHL Sbjct: 125 VVAQLLEHETEHLDGILYIDHLE 147 >gi|260892750|ref|YP_003238847.1| peptide deformylase [Ammonifex degensii KC4] gi|260864891|gb|ACX51997.1| peptide deformylase [Ammonifex degensii KC4] Length = 154 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 87/143 (60%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR ++P++KI I LI +M E MY G+GLAA Q+GV R++V+D + ++ Sbjct: 14 DKVLREKAQPVDKITPQIQKLIRDMTETMYRAQGVGLAAPQVGVSLRVIVVDTGSNLYQ- 72 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 INP+I+ + +EGCLSIP +V R+A + VR + + I ADGLL Sbjct: 73 ----LINPEIVAREGEEK-GREGCLSIPGVWGEVVRAASVLVRALTPEGREVSIEADGLL 127 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A LQHE+DHL+GILFID ++ Sbjct: 128 ARALQHEIDHLDGILFIDRAEKV 150 >gi|262067438|ref|ZP_06027050.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693] gi|291378801|gb|EFE86319.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693] Length = 174 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 98/159 (61%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + D IL+++++ +E +IN + +D+M+E MY TDGIGLAA Q+GV R+ V D Sbjct: 8 YGDDILKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRIFVCDDGTG 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 RK INP I +++ ++EGCLS+P V+R + ++Y++ N + A Sbjct: 68 KIRK----LINPIIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYINENGEAVEEIA 123 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + LLA +QHE DHLNGILF++ +S + + +I KK++ + Sbjct: 124 EDLLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANM 162 >gi|114330413|ref|YP_746635.1| peptide deformylase [Nitrosomonas eutropha C91] gi|114307427|gb|ABI58670.1| peptide deformylase [Nitrosomonas eutropha C91] Length = 168 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +++ + + +I L NM E MY+ G+GLAA Q+ V R+VVID + Sbjct: 9 YPDERLHKIAAVVPSVTREIRILASNMAETMYAAAGVGLAATQVDVHKRVVVIDTSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+II S S QEGCLS+P V R+ ITVR D + + + A G Sbjct: 67 RDELLVLINPEIIA-STGKSETQEGCLSVPGIFDKVSRAEQITVRATDIDGKSFEMDATG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE+DHL G +F+++LS K+ I K+ K Sbjct: 126 LLAVCIQHEMDHLIGKVFVEYLSPFKQSRILSKLKK 161 >gi|51892481|ref|YP_075172.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863] gi|81692121|sp|Q67PR5|DEF_SYMTH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|51856170|dbj|BAD40328.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863] Length = 217 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 3/149 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P +LR+ ++P+ KIN+ I L+D+M E MY+ G+GLAA Q+GV RL+V+D QD Sbjct: 6 IVKEPAEVLRKKAKPVTKINASIRKLLDDMTETMYAAPGVGLAAPQVGVSKRLIVVDPQD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP+I+ ++ + EGCLSIP DV R + V +D + I Sbjct: 66 GSGQL--YQLINPEIVK-AEGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGKKVWID 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLK 154 A+G LA QHE+DHL+GIL+ D + L+ Sbjct: 123 AEGYLARIFQHEIDHLDGILYTDKCTNLR 151 >gi|73748571|ref|YP_307810.1| peptide deformylase [Dehalococcoides sp. CBDB1] gi|289432597|ref|YP_003462470.1| peptide deformylase [Dehalococcoides sp. GT] gi|123773670|sp|Q3ZXA9|DEF_DEHSC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|73660287|emb|CAI82894.1| polypeptide deformylase [Dehalococcoides sp. CBDB1] gi|288946317|gb|ADC74014.1| peptide deformylase [Dehalococcoides sp. GT] Length = 167 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 4/143 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 P+P+LR+ ++ + I+ I LID+M+E M S DG GLAA Q+GV RLVV D Sbjct: 9 LPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVVFREPD--- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 K V INP+I+ V EGCLSIP Y ++ R+ +T + +D + + I G Sbjct: 66 TKEATVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGKACRIKGTG 124 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 ++A L+HE +HL+GIL+IDHL Sbjct: 125 IVAQLLEHETEHLDGILYIDHLE 147 >gi|282882057|ref|ZP_06290698.1| peptide deformylase [Peptoniphilus lacrimalis 315-B] gi|281298087|gb|EFA90542.1| peptide deformylase [Peptoniphilus lacrimalis 315-B] Length = 166 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 4/159 (2%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D ILR+ S+ +E N + L+D+M E M S DG+GLAA Q+G+L RL+V+D +D + Sbjct: 10 EDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIVVDDRDEEN- 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 ++ INP +IT + V +EGCLSIP + DVKR+ I V Y + + + I Sbjct: 69 QHRFYLINP-VITRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGKEEKINCKDF 127 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LA +QHE+DHL+GIL+ D ++ R I +K L +L Sbjct: 128 LARIIQHEIDHLDGILYTDRAEKMYR--IVQKDDNLEEL 164 >gi|188583614|ref|YP_001927059.1| peptide deformylase [Methylobacterium populi BJ001] gi|179347112|gb|ACB82524.1| formylmethionine deformylase [Methylobacterium populi BJ001] Length = 171 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 98/166 (59%), Gaps = 5/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV++PDP L R + P+ + L ++L+ + + +GL A+ IG R+VV Sbjct: 1 MPARPLVLYPDPRLHRAAGPVTASGEGVRALAADVLDTLGAVSAMGLTAIHIGRPERVVV 60 Query: 61 IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I LQ D H V+++P ++ S + + + EG +S+P V+R A + VRY D + Sbjct: 61 IRLQPDEPH----AVYVDPVLVWASPERAAHPEGSVSMPGVVEPVERPARVRVRYRDLDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A+GL A CLQHE+D L+GI +ID LSRL+R+ + K+ +KL Sbjct: 117 AEHEEEAEGLRAACLQHEIDQLDGIFWIDRLSRLRRERVLKRFAKL 162 >gi|16330073|ref|NP_440801.1| peptide deformylase [Synechocystis sp. PCC 6803] gi|2499924|sp|P73441|DEF_SYNY3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1652560|dbj|BAA17481.1| polypeptide deformylase [Synechocystis sp. PCC 6803] Length = 187 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 56/140 (40%), Positives = 87/140 (62%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I K++ I L ML+ MYS +GIGLAA Q+G+ +L+V+D + + Sbjct: 24 DKVLRQPAKRIAKVDDSIRKLAKEMLQTMYSANGIGLAAPQVGINKQLLVVDCEQDKPDE 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+I S++ V +EGCLS+P+ DV R I V Y D + + Q L Sbjct: 84 PPLIMINPQITRTSEELCVVEEGCLSVPNVYMDVTRPRAIEVTYKDEHGRPQKRLFAELT 143 Query: 131 ATCLQHELDHLNGILFIDHL 150 A +QHE+DHLNG++F+D + Sbjct: 144 ARVIQHEMDHLNGVMFVDRV 163 >gi|89890524|ref|ZP_01202034.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7] gi|89517439|gb|EAS20096.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7] Length = 196 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DP+LR+V++ I ++ +++NM E MY G+GLAA Q+G+ R+ ++D Sbjct: 4 PIVAYGDPVLRKVAKDITPDYPNLDKVLENMWETMYGASGVGLAAPQVGMPIRIFLVDTS 63 Query: 65 DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 FIN I+ + + + EGCLSIP+ R DV R +T+ Sbjct: 64 PFGDDPELTPEEQKELGSFKKAFINAHIVEENGEEWAFNEGCLSIPNVREDVFRPEEVTI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 RY D N + GL+A +QHE DH+ GILF D +S LK+ +I K++ + + Sbjct: 124 RYCDENFKEVTETYTGLMARVIQHEYDHIEGILFTDKISSLKKRLIKGKLANISK 178 >gi|258515528|ref|YP_003191750.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] gi|257779233|gb|ACV63127.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] Length = 164 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 89/150 (59%), Gaps = 6/150 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V DP+LR+ + P++ INS I L+ NM + MY G+GLAA QIG+ R+VV+D+ + Sbjct: 6 IVEVGDPVLRQKANPVKNINSSIHKLLKNMADTMYDAKGVGLAAPQIGISKRVVVVDIGE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + INP+II S EGCLSIP V R++ I V+ ++ N + + Sbjct: 66 -----GLLELINPRIIKASGQ-ETDTEGCLSIPGTLGQVPRASKIQVQALNRNGEQVEYH 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 G +A +QHELDHL+GILFID L++ Sbjct: 120 VKGFMARAVQHELDHLDGILFIDKAESLRK 149 >gi|260591629|ref|ZP_05857087.1| peptide deformylase [Prevotella veroralis F0319] gi|260536429|gb|EEX19046.1| peptide deformylase [Prevotella veroralis F0319] Length = 186 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 6/169 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVIDL Sbjct: 4 PVYTYGQPVLRKVAEDIPLDYPDLQQLIQNMFETNTASDGVGLAAPQIGKSIRVVVIDLD 63 Query: 65 DHA-----HRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + ++ FIN I+ F D + +EGCLS+P V R+ I V+Y+D N Sbjct: 64 VLSDTFPEYKGFRHAFINGHILEFDDSETETLEEGCLSLPGIHESVTRAKRIYVKYVDEN 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G LA +QHE DHL+G +F DHLS ++ MI K+ L+Q Sbjct: 124 LVEHEEWIEGYLARVIQHEFDHLDGKVFTDHLSPFRKQMINSKLKALLQ 172 >gi|114766696|ref|ZP_01445635.1| peptide deformylase [Pelagibaca bermudensis HTCC2601] gi|114541086|gb|EAU44141.1| peptide deformylase [Roseovarius sp. HTCC2601] Length = 164 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 97/166 (58%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + P+E I +I + +M++ M + G+GL A QIGV+ RL V Sbjct: 1 MTARPCIPWPDKRLRSPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R P+ NP+I+ S + E ++P A ++R +TVR++ N Sbjct: 61 VDASE--ERGQPVRMANPEILHASVKLRSHDEASPNLPGVWAKIERPRAVTVRFL--NEA 116 Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +I D GL AT +QH++DHLNG ++ DHLS++KRD++ ++ K Sbjct: 117 GEIEERDFVGLWATSVQHQIDHLNGKMYFDHLSKVKRDILLRRAKK 162 >gi|195953865|ref|YP_002122155.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] gi|195933477|gb|ACG58177.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] Length = 171 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 98/164 (59%), Gaps = 3/164 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 +V FP+ IL+R + P++ I+++I +I M E MY DGIGLAA Q+ + ++VID Sbjct: 4 IVTFPNEILKRKTNPVKSIDAEIKEIIKEMKETMYKNDGIGLAANQVNIPLSIMVIDTTS 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 ++ K V INP ++ + ++EGCLS P + +V R+ IT++ ++ + I Sbjct: 64 REDDQEKFKDVLINPTVLAKEGEIK-FKEGCLSFPGLQVEVIRAKEITIKAINECEEEVI 122 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GL A QHE DHLNGI F+D LS +K+ + +K K+++ Sbjct: 123 LNLSGLPAIVFQHEFDHLNGITFLDRLSGIKKRLALEKYQKMLK 166 >gi|296273945|ref|YP_003656576.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299] gi|296098119|gb|ADG94069.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299] Length = 170 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 4/164 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61 + ++ +P+ +LR S+ + K + ++ L+D+M E M + G+GLAA+Q+ V +++I Sbjct: 3 REVITYPNKLLREKSKDVVKFDDELHTLLDDMYETMIAQSGVGLAAIQVAVPLNVLIILI 62 Query: 62 -DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D + + + INPKI T D V+ EGCLS+P + DVKR+ I V Y D Sbjct: 63 PDENDIQAKDSLIEAINPKI-THKDGIQVFTEGCLSVPGFNEDVKRAQHIIVEYQDRFGN 121 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +Q + + LA QHE+DHL G LFI+ LS +KR K+ K Sbjct: 122 NQKMETEDFLAVAWQHEMDHLEGHLFIEKLSLMKRKKFEKEYKK 165 >gi|253681963|ref|ZP_04862760.1| peptide deformylase [Clostridium botulinum D str. 1873] gi|253561675|gb|EES91127.1| peptide deformylase [Clostridium botulinum D str. 1873] Length = 149 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ + +++IN I+ LI++M E MY DG+GLAA QIGVL RLVV Sbjct: 1 MALRNIRVNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + INP+II++ + Y EGCLS+P + V R + + ++ + Sbjct: 61 IDVGDGS-----ISLINPEIISYEGSQTDY-EGCLSLPGKQGKVTRPYKVIAKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 I +GLLA + HELDHL+G+LF+D + Sbjct: 115 EVEINGEGLLARAICHELDHLDGVLFMDKV 144 >gi|257871146|ref|ZP_05650799.1| formylmethionine deformylase [Enterococcus gallinarum EG2] gi|257805310|gb|EEV34132.1| formylmethionine deformylase [Enterococcus gallinarum EG2] Length = 163 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 61/149 (40%), Positives = 94/149 (63%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LRR +P+ I +++ L+++M E M + DG+G+AA QIG ++ ++ Sbjct: 1 MRYPIIIHPDDQLRRKPKPVSMITDELVQLLEDMYETMVAHDGVGIAAPQIGKNLQVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + ++ INP+II S + SV EGCLSIP VKR+ ITVRY D + Sbjct: 61 EVDE----EDRFELINPEIIESSGE-SVDVEGCLSIPHTYGTVKRADEITVRYFDREGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA +QHE+DHLNG+LFID + Sbjct: 116 MEVQAFGYLARAIQHEIDHLNGVLFIDKM 144 >gi|189423599|ref|YP_001950776.1| peptide deformylase [Geobacter lovleyi SZ] gi|189419858|gb|ACD94256.1| peptide deformylase [Geobacter lovleyi SZ] Length = 169 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 106/167 (63%), Gaps = 7/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M +P++ +P P+L++++ + ++ I L+ ++++ M + G +G+AA QIGV R+ Sbjct: 1 MAVQPILKYPHPLLKKMAHRVAALDEPIHTLVQDLIDTMQAGPGSVGVAAPQIGVGLRVC 60 Query: 60 VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ + H K+ + +NP+II+ S +V +EGC+S+PDY DV+R+ ITVR++ Sbjct: 61 VVDVSNSRHGKDNNHGLLCMVNPEIISRSG-LAVMREGCMSVPDYTGDVERATEITVRFL 119 Query: 116 DC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 D + Q + + A G A +QHE+DHL+G+LF+D + + + +K Sbjct: 120 DSRSGQQREVAASGFEAVAIQHEMDHLDGLLFLDRIISVSTGLFRRK 166 >gi|332981562|ref|YP_004463003.1| peptide deformylase [Mahella australiensis 50-1 BON] gi|332699240|gb|AEE96181.1| peptide deformylase [Mahella australiensis 50-1 BON] Length = 165 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 60/142 (42%), Positives = 88/142 (61%), Gaps = 4/142 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 F DPILR+ +RP+ KI+ ++ L+D+M+E M +G+GLAA Q+G+L R+VVI D Sbjct: 9 FKDPILRKKARPVVKIDKRLLTLLDDMVETMKKAEGVGLAAPQVGILKRVVVIADMDE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + INP+II S + V EGCLS P VKR +TVR MD + + + G Sbjct: 67 -DKIIELINPEIIAQSGE-QVGPEGCLSFPGMSGTVKRPEQVTVRAMDRKGEIREVTGTG 124 Query: 129 LLATCLQHELDHLNGILFIDHL 150 ++A HE+DHL+GI+F+D + Sbjct: 125 IIARAFCHEIDHLDGIVFLDKV 146 >gi|325478778|gb|EGC81889.1| peptide deformylase [Anaerococcus prevotii ACS-065-V-Col13] Length = 155 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 87/138 (63%), Gaps = 3/138 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR+ S+ + ++ I L+D+M E MY DG+GLAA Q+G+L R++V+D D Sbjct: 11 DPLLRKKSKVVPEVTDRIKVLLDDMAETMYQADGVGLAAPQVGILKRVIVVDPHDET--T 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP+II +D V EGCLSIP++ A VKR + V+Y+D + +I A G Sbjct: 69 GLVKLVNPEIIE-ADGEQVGVEGCLSIPNFNATVKRPEHVKVKYIDEDGNEKIWDAHGFP 127 Query: 131 ATCLQHELDHLNGILFID 148 A L HE+DHL+GILF D Sbjct: 128 AVILSHEIDHLDGILFRD 145 >gi|310815112|ref|YP_003963076.1| peptide deformylase [Ketogulonicigenium vulgare Y25] gi|308753847|gb|ADO41776.1| peptide deformylase [Ketogulonicigenium vulgare Y25] Length = 163 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 6/164 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P V++P P+LR+ + +E I +I L D M+E M + G+GLAAVQ+GV L V+D Sbjct: 3 RPFVMWPAPVLRKPAAQVEAITPEITALWDEMVEAMDAMPGVGLAAVQLGVPLALAVVDA 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D R + NP+I+ S ++E ++P A + R +TVR++ NA ++ Sbjct: 63 SD--ARGQAIRMANPEILHASVQLREHEEASPNLPGISAVISRPRAVTVRFL--NAWGEV 118 Query: 124 IYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D GL AT +QH++DHL G ++ D LS++KRDM +K K Sbjct: 119 EERDLVGLWATSMQHQIDHLAGKMYFDRLSKIKRDMFLRKARKF 162 >gi|291563557|emb|CBL42373.1| peptide deformylase [butyrate-producing bacterium SS3/4] Length = 158 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 59/148 (39%), Positives = 89/148 (60%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D IL + +P++++N + LI++M E MY +G+GLAA Q+GV R+VV Sbjct: 1 MAIRQIRTIGDEILTKECKPVKEMNERTLELIEDMFETMYENNGVGLAAPQVGVRKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D N V INP+I+ S QEGCLS+P V R+ + + ++ N + Sbjct: 61 IDVED----GNQYVLINPEILETSGS-QTGQEGCLSVPGKCGQVTRADHVKAKALNENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I ADGLLA C+ HE DHL+G L++D Sbjct: 116 EYEIEADGLLARCILHECDHLDGKLYVD 143 >gi|330991623|ref|ZP_08315574.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1] gi|329761642|gb|EGG78135.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1] Length = 173 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 3/164 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ FP L++ + P++ ++ L ++LE M++ GIG+ A +G+L RLVVIDL Sbjct: 5 PIIRFPHACLQQAAAPVDATSARTTELARDLLETMHAAPGIGITACHVGMLLRLVVIDLP 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P NP+II + +EG +S+P A V R A + VRY + Sbjct: 65 GG---NGPQARANPEIIWQDTATATAEEGSVSMPGIHAPVTRPARVRVRYTGLDGLMVEE 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA CLQHE+D +NGI + LS L+RD K+ S+ +L Sbjct: 122 EAEGLLAACLQHEIDQINGIFWTRRLSPLRRDRAMKRYSRQTRL 165 >gi|291277234|ref|YP_003517006.1| polypeptide deformylase [Helicobacter mustelae 12198] gi|290964428|emb|CBG40278.1| polypeptide deformylase [Helicobacter mustelae 12198] Length = 171 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 93/147 (63%), Gaps = 5/147 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----Q 64 +P P+LR+ S+ ++ ++ + +D+M + M +G+GLAAVQ+G L+R++++++ Sbjct: 9 YPHPLLRQKSKEVQNFDASLHAFLDDMYDTMLEREGVGLAAVQVGRLHRILLVNIPRQED 68 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++++ + INP +I ++ + EGCLS+P + +VKR IT+ Y D Q++ Sbjct: 69 GKQYKEDLLEIINP-VILHQEEEIFWNEGCLSVPGFYEEVKRYGSITLGYQDRFGGEQVL 127 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 A G LA LQHE+DHL GILFID LS Sbjct: 128 RAQGFLAVALQHEMDHLEGILFIDKLS 154 >gi|257066166|ref|YP_003152422.1| peptide deformylase [Anaerococcus prevotii DSM 20548] gi|256798046|gb|ACV28701.1| peptide deformylase [Anaerococcus prevotii DSM 20548] Length = 158 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 3/138 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR+ S+ + +I I L+D+M + MY DG+GLAA Q+G+L R++V+D D Sbjct: 11 DPILRKTSKLVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIVVDPHDDT--T 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP+II SD + EGCLSIP++ A VKR + V+Y+D +I A G Sbjct: 69 GLVKLVNPEIIE-SDGEQIGIEGCLSIPNFNATVKRPEHLKVKYLDEEGNEKIWDAHGFP 127 Query: 131 ATCLQHELDHLNGILFID 148 A L HE+DHL+GILF D Sbjct: 128 AEILSHEIDHLDGILFRD 145 >gi|168186792|ref|ZP_02621427.1| peptide deformylase [Clostridium botulinum C str. Eklund] gi|169295112|gb|EDS77245.1| peptide deformylase [Clostridium botulinum C str. Eklund] Length = 150 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 60/140 (42%), Positives = 86/140 (61%), Gaps = 6/140 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+ R + +I+ I+ LI++M E MY DG+GLAA Q+G+L RLVVID+ + Sbjct: 11 DAILRKNCREVGEIDERILTLIEDMKETMYEADGVGLAAPQVGILKRLVVIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+ INP+II + Y EGCLS+P + V R +T + ++ + I +GLL Sbjct: 66 GPITLINPEIIESEGSQTDY-EGCLSLPGKQGKVTRPYKVTAKALNEKGEQVKIKGEGLL 124 Query: 131 ATCLQHELDHLNGILFIDHL 150 A + HELDHL+G LFID + Sbjct: 125 ARAICHELDHLDGTLFIDKV 144 >gi|253987938|ref|YP_003039294.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779388|emb|CAQ82549.1| peptide deformylase 2 [Photorhabdus asymbiotica] Length = 168 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD LR+ + + + I LID+ML+ MYSTD GIGLAA Q+G ++ Sbjct: 1 MATLEILTIPDERLRQKCVEVTNVEA-IQGLIDDMLDTMYSTDNGIGLAAPQVGRKEAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +ID+ A R P++ +NPKI+ D + QEGCLS+P Y ADV+R + V ++ + Sbjct: 60 IIDIS--ATRDEPLILVNPKIVE-KDRSVIGQEGCLSVPGYYADVERFEKVKVEALNRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + + ++ LA +QHE+DHL+G +FID+LS LKR M Sbjct: 117 ETITVESEDFLAIVMQHEIDHLHGKIFIDYLSPLKRQM 154 >gi|149911294|ref|ZP_01899915.1| peptide deformylase [Moritella sp. PE36] gi|149805609|gb|EDM65611.1| peptide deformylase [Moritella sp. PE36] Length = 168 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/142 (46%), Positives = 87/142 (61%), Gaps = 6/142 (4%) Query: 15 RRVSRPIEKIN--SDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 +++ P EK+ S + LID+ML+ MY TD GIGLA+ Q+G +VVID+ + R Sbjct: 12 KKLEIPAEKVADVSTVQTLIDDMLDTMYKTDDGIGLASTQVGRKEAVVVIDISEG--RNE 69 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 PMV INP ++ + S QEGCLSIP Y ADV+R + V +D I DG LA Sbjct: 70 PMVLINPVVVEGENKES-GQEGCLSIPGYYADVERFTKVKVTALDREGNEIEINDDGFLA 128 Query: 132 TCLQHELDHLNGILFIDHLSRL 153 +QHE+DHL G LFID+LS L Sbjct: 129 IAMQHEIDHLKGTLFIDYLSPL 150 >gi|21674275|ref|NP_662340.1| polypeptide deformylase [Chlorobium tepidum TLS] gi|25452909|sp|Q8KCG7|DEF_CHLTE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21647445|gb|AAM72682.1| peptide deformylase [Chlorobium tepidum TLS] Length = 187 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ + DP+L ++P++ ++S I LI M + MY GIGLAA Q+G RLVV+D+ Sbjct: 4 PINTYSDPVLAMKAKPLKGVDSAIEELIAEMFDTMYKAPGIGLAAPQVGHSLRLVVVDIS 63 Query: 64 --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 +++A K PMV INP+I+ S+ +EGCLS+P +V R + IT+ Y D + Sbjct: 64 TIKEYADFK-PMVVINPRIVAVRGR-SLMEEGCLSVPGIAGNVVRPSAITLHYRDEKFEE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++A LQHE+DHL+G LF+D + + R I K++ + + R Sbjct: 122 HTADFHSMMARVLQHEIDHLDGTLFVDRMDKRDRRKIQKELDAIAEGR 169 >gi|154175184|ref|YP_001407439.1| peptide deformylase [Campylobacter curvus 525.92] gi|112803277|gb|EAU00621.1| peptide deformylase [Campylobacter curvus 525.92] Length = 174 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 91/150 (60%), Gaps = 4/150 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P+ L VS+ +E + ++ L+D+M E M + DGIGLAA+Q+GV R+ +++L + Sbjct: 8 YPNKKLYEVSKEVETFDEELHKLLDDMYETMIAKDGIGLAAIQVGVAKRIFIVNLSNEEG 67 Query: 69 ---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + + INP+ VYQEGCLS+P + DVKR+ + +++ D Q + I Sbjct: 68 VQDKADLIEIINPEF-ELKVGECVYQEGCLSVPGFYEDVKRAERVKIKFQDRFGQERQIE 126 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 DGLLA LQHE DHL+G LFI+ + KR Sbjct: 127 TDGLLAVALQHENDHLDGHLFIEKIGYNKR 156 >gi|163743815|ref|ZP_02151188.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161382964|gb|EDQ07360.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] Length = 165 Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + + +I + + L +M++ M + G+GLAA QIGVL RL V Sbjct: 1 MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R + NP+I+ S ++E ++P A +KR +TVRYMD Sbjct: 61 ID--GSSERGRAVRLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETG- 117 Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + D G+ AT +QH+LDHLNG ++ D LS++KRDM+ +K KL Sbjct: 118 -ATVERDFVGIEATSVQHQLDHLNGKMYFDKLSKVKRDMLIRKAKKL 163 >gi|17433052|sp|Q9FV54|DEF1B_SOLLC RecName: Full=Peptide deformylase 1B, chloroplastic; Short=PDF 1B; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|11320950|gb|AAG33972.1| peptide deformylase-like protein [Solanum lycopersicum] Length = 279 Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 89/160 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ ++++ L+D M ++MY TDGIGL+A Q+G+ +L+V + Sbjct: 89 IVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNAAG 148 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP++ +S Y+EGCLS P DVKR + V D N I Sbjct: 149 ERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFEIS 208 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L A QHE DHL G+LF D ++ D I +K+ L Sbjct: 209 LSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVAL 248 >gi|258647932|ref|ZP_05735401.1| peptide deformylase [Prevotella tannerae ATCC 51259] gi|260851771|gb|EEX71640.1| peptide deformylase [Prevotella tannerae ATCC 51259] Length = 185 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 10/169 (5%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61 P+ + P+LR+V++ IE + LI++M E M +DG+GLAA QIG R++VI Sbjct: 4 PIYTYGQPVLRKVAQDIEADFPGLEQLIEDMYETMDKSDGVGLAAPQIGKAIRVIVISLD 63 Query: 62 ----DLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D ++A ++ +INP II F D + S +EGCLS+P VKR I V+Y D Sbjct: 64 VLKEDFPEYAGFRH--AYINPHIIEFDDSEISTLEEGCLSLPGIHEPVKRPTRIHVQYRD 121 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 N + + +G LA +QHE+DHL G +F D +S L++ M+ K++ + Sbjct: 122 ENFEPHDEWVEGYLARVMQHEIDHLEGHVFTDRISPLRKQMVKNKLNAI 170 >gi|260574965|ref|ZP_05842967.1| peptide deformylase [Rhodobacter sp. SW2] gi|259022970|gb|EEW26264.1| peptide deformylase [Rhodobacter sp. SW2] Length = 163 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 5/148 (3%) Query: 5 PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P++ +PD R++ P + + +D+ L +ML MY+ G GLAA QIG+L R+ V+D Sbjct: 5 PILCWPD---ARLATPCDPVAPGADLRALAADMLATMYAATGRGLAAPQIGILQRVFVMD 61 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 R P V +NP+I+ S+ EGCLS+P D+ R A I +R+ D + Sbjct: 62 TGWKEGRPAPQVLVNPEILWRSEACKTVAEGCLSLPGISPDISRPAEIRLRWRDLDGTPH 121 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150 + G ATC QHE+DHL+GIL +DHL Sbjct: 122 EAHLTGFAATCAQHEIDHLDGILTLDHL 149 >gi|283955379|ref|ZP_06372878.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414] gi|283793139|gb|EFC31909.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414] Length = 676 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV+K ++ +P+P L S + K ++++ NL+D+M E M +++G+GLAA+Q+ V R+++ Sbjct: 1 MVRK-IITYPNPKLFLSSETVNKFDAELHNLLDDMYETMIASNGVGLAAIQVDVPLRVLL 59 Query: 61 IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ D +++ + INP+II ++ EGCLS+PD+ +VKR + ++Y D Sbjct: 60 VNIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHVLLKYQDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 120 FGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157 >gi|308535392|ref|YP_002140756.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] gi|308052737|gb|ACH40960.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] Length = 184 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 107/169 (63%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + +V +P+ IL+ + +E+I+ + L+D++++ M++ G +G+A+ QIGV R+ Sbjct: 17 MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMHAGPGSVGVASPQIGVSLRVC 76 Query: 60 VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 VID+ + H K+ ++ INP+I+ S +V +EGC+S+PDY DV+RS +T+R+ Sbjct: 77 VIDVSKNRHGKDNNHGLLLMINPEILARSG-AAVMREGCMSVPDYTGDVERSTELTLRFT 135 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + A G A +QHELDHL+G+LF+D ++ LK + +K K Sbjct: 136 EPDGTVREFEASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 184 >gi|253702639|ref|YP_003023828.1| peptide deformylase [Geobacter sp. M21] gi|251777489|gb|ACT20070.1| peptide deformylase [Geobacter sp. M21] Length = 168 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 107/169 (63%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + +V +P+ IL+ + +E+I+ + L+D++++ M + G +G+A+ QIGV R+ Sbjct: 1 MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMQAGPGSVGVASPQIGVSLRVC 60 Query: 60 VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 VID+ + H K+ ++ INP+I+ S +V +EGC+S+PDY DV+RS +T+R+ Sbjct: 61 VIDVSKNRHGKDNNHGLLLMINPEILARSG-AAVMREGCMSVPDYTGDVERSTELTLRFT 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + I A G A +QHELDHL+G+LF+D ++ LK + +K K Sbjct: 120 EPDGTVREIDASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 168 >gi|327402962|ref|YP_004343800.1| peptide deformylase [Fluviicola taffensis DSM 16823] gi|327318470|gb|AEA42962.1| peptide deformylase [Fluviicola taffensis DSM 16823] Length = 198 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 95/177 (53%), Gaps = 14/177 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DP+L++ + I+ ++ LI++M E MY G+GLAA QI RL V+D Sbjct: 4 PIVAYGDPVLKKEAVEIDANYPELKKLIEDMFETMYEASGVGLAAPQINRSIRLFVVDGS 63 Query: 65 DHAH---------RKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 A + M VFINP I + + + EGCLSIP R +V R I Sbjct: 64 PFAETDEDEEEDPKAEGMEGFKRVFINPIIEEETGESWGFHEGCLSIPKIREEVMRKEKI 123 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Y D N Q + DG A +QHE DH+ G+LF DHLS LKR +++K++ + Q Sbjct: 124 RITYYDENWQLHDEWFDGYKARIIQHEYDHIEGVLFTDHLSVLKRRLLSKRLQNISQ 180 >gi|149913451|ref|ZP_01901984.1| peptide deformylase [Roseobacter sp. AzwK-3b] gi|149812571|gb|EDM72400.1| peptide deformylase [Roseobacter sp. AzwK-3b] Length = 165 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 94/158 (59%), Gaps = 2/158 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR + P+E I ++ + D+M++ M + G+GLAA QIGV+ RL V+D + Sbjct: 9 WPDKRLRSPAAPVEAITDEVRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAVVDASET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R + NP+I+ S + ++E ++P A +KR +TVR+++ + + G Sbjct: 67 RGQAVRMANPEILHSSIELRSHEEASPNLPGVSAAIKRPRAVTVRFLNTQGEMEERDFVG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 L AT +QH++D L G LF+D LS++KRDM+ +K KL Sbjct: 127 LWATSVQHQIDQLEGRLFVDRLSKVKRDMLLRKARKLA 164 >gi|118594097|ref|ZP_01551444.1| peptide deformylase [Methylophilales bacterium HTCC2181] gi|118439875|gb|EAV46502.1| peptide deformylase [Methylophilales bacterium HTCC2181] Length = 165 Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 97/153 (63%), Gaps = 3/153 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PDP L +V++ + ++ LI +M E MY ++GIGLAA Q+ R++VID+ D Sbjct: 6 ILTYPDPNLHKVAKRVINVDEVHKKLIKDMAETMYGSNGIGLAATQVNFHERIIVIDISD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + + INP+II + Y+EGCLS+P + V+R +I V+ +D + I Sbjct: 66 D--KNDLLTLINPEIIQ-KEGKQEYEEGCLSVPGFYEAVERFDYIKVQSLDNRGKSFEIE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 A GLL+ C+QHE+DHL G +F+++LS LK++ I Sbjct: 123 AHGLLSVCIQHEMDHLEGKVFVEYLSPLKQNRI 155 >gi|227488838|ref|ZP_03919154.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542166|ref|ZP_03972215.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091260|gb|EEI26572.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181995|gb|EEI62967.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 177 Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 94/168 (55%), Gaps = 7/168 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M++K L + DP+L + P++++ + L+ +MLE M S G+GLAA Q+GVL R+ V Sbjct: 1 MIRK-LRLMGDPVLVSEAEPVDEVTASTKTLVSDMLETMDSAGGVGLAANQVGVLQRVFV 59 Query: 61 IDLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D NP INP ++ + QEGCLSIPD AD +R + V Sbjct: 60 YDCPVDDSDPNPDREYKRGAIINPVWEPVGEEMQLGQEGCLSIPDVYADTERYMNVHVTG 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D N + A GLLA C+QHE DHL+G+LFI L++ +R K++ Sbjct: 120 LDENGDNVDFEATGLLARCIQHETDHLDGVLFIKRLTKERRKEAMKEI 167 >gi|228473115|ref|ZP_04057872.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624] gi|228275697|gb|EEK14474.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624] Length = 198 Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 96/174 (55%), Gaps = 14/174 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DP+LR+ PI K ++ LI++M + MY ++G+GLAA Q+G+ RL V+D + Sbjct: 4 PIVAYGDPVLRKECMPIAKDYPELPKLIEDMYQTMYHSNGVGLAAPQVGLAIRLFVVDTE 63 Query: 65 DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + FIN KI+ + + EGCLSIP DV R I + Sbjct: 64 PFCENDDLSDAERDYLKGFKKAFINAKILKEEGEPWPFSEGCLSIPGISEDVLRKPTIVI 123 Query: 113 RYMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Y D + A H ++ GL+A +QHE DH+ GILF DHLS K+ ++ K++ + Sbjct: 124 EYQDEHFATHTETFS-GLVARVIQHEYDHIEGILFTDHLSSFKKQLLKNKLNNI 176 >gi|319902632|ref|YP_004162360.1| peptide deformylase [Bacteroides helcogenes P 36-108] gi|319417663|gb|ADV44774.1| peptide deformylase [Bacteroides helcogenes P 36-108] Length = 185 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+V+ I ++ LIDNM E M + +G+GLAA QIG+ R+VV++L Sbjct: 4 PIYVYGQPVLRKVAEDITPDYPNLKELIDNMFETMDNAEGVGLAAPQIGLPIRVVVVNLD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D K+ V+IN I+ + + +EGCLS+P V+R I V+Y+D N Sbjct: 64 VLSDDMPEYKDFRKVYINAHILDVAGEEVSMEEGCLSLPGIHESVRRGDKIRVKYLDENM 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +FIDH+S L++ MI K+ L++ Sbjct: 124 VAHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLGSLLK 171 >gi|329961281|ref|ZP_08299447.1| peptide deformylase [Bacteroides fluxus YIT 12057] gi|328531946|gb|EGF58763.1| peptide deformylase [Bacteroides fluxus YIT 12057] Length = 186 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI NM E M + +G+GLAA QIG+ R+V ++L Sbjct: 4 PIYVYGQPVLRKVAEDITPDYPNLKELIGNMFETMDNAEGVGLAAPQIGLPIRVVTVNLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D K +IN I+ + + +EGCLS+P VKR I V+Y+D N Sbjct: 64 VLSEDLPEYKGFRKAYINAHILDVAGEEVSMEEGCLSLPGIHESVKRGDKIHVKYLDENL 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G LA +QHE DHL+G +FIDHLS L++ MI K++ L++ Sbjct: 124 EEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNALLK 171 >gi|27262480|gb|AAN87521.1| Polypeptide deformylase [Heliobacillus mobilis] Length = 166 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 92/147 (62%), Gaps = 6/147 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V DP+LR ++ + K N+++ L+D+M + M + G+GLAA QIG+ R+VVID+ D Sbjct: 20 IVKIGDPVLREKAKTVTKFNANLGRLMDDMYDTMVAAKGVGLAAPQIGISKRVVVIDVGD 79 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +NP+I+ ++ + EGCLSIPD++ +V RS + V+ + N + +I Sbjct: 80 -----GRIELVNPEILE-AEGSQIDVEGCLSIPDFQEEVNRSQRVKVKAQNRNGEEYVIE 133 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 G LA LQHE+DHL G+LF+D L + Sbjct: 134 GTGFLARALQHEIDHLEGVLFVDLLDK 160 >gi|255560876|ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis] gi|223539350|gb|EEF40941.1| polypeptide deformylase, putative [Ricinus communis] Length = 282 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 88/160 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILRR ++ I+ + ++ L+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 92 IVEYPDPILRRKNKRIDTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVG 151 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V INP++ +S + EGCLS P ADV R + + D N + Sbjct: 152 ERGEGEEIVLINPRLNKYSKKIVPFNEGCLSFPGIYADVLRPESVKIDARDINGARFTVN 211 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL A QHE DHL GILF D ++ D I ++ L Sbjct: 212 LSGLPARVFQHEYDHLEGILFFDRMTDEVLDSIRAQLQAL 251 >gi|269119796|ref|YP_003307973.1| peptide deformylase [Sebaldella termitidis ATCC 33386] gi|268613674|gb|ACZ08042.1| peptide deformylase [Sebaldella termitidis ATCC 33386] Length = 162 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 94/160 (58%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ + +P+LR VS+ + +I +I ++D M+E M G+GLAA Q+G+ R V ++ Sbjct: 3 IIYYGNPVLREVSKEVTEITDEIRQILDEMVETMREESGVGLAANQVGLTQRFFVGEVDG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP+II F + +EGCLSIP VKR I VRY + + Sbjct: 63 NVKK-----IINPEIIEFGKEEIELEEGCLSIPGIYKRVKRPEKIKVRYQNEKGETVEEE 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + A QHELDHL+GILFID +S L + +I+K+++++ Sbjct: 118 LNEVWARVFQHELDHLDGILFIDKISPLNKRLISKRLAQI 157 >gi|237740379|ref|ZP_04570860.1| polypeptide deformylase [Fusobacterium sp. 2_1_31] gi|229422396|gb|EEO37443.1| polypeptide deformylase [Fusobacterium sp. 2_1_31] Length = 174 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 98/159 (61%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + D +L+++++ +E +IN + +D+M+E MY TDGIGLAA Q+GV R+ V + Sbjct: 8 YGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYKTDGIGLAAPQVGVSKRVFVCEDGTG 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 RK INP I +++ ++EGCLS+P V+R + ++Y++ N + A Sbjct: 68 KIRK----LINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYLNENGEAVEEIA 123 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + LLA +QHE DHLNGILF++ +S + + +I KK++ + Sbjct: 124 EELLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANM 162 >gi|217077056|ref|YP_002334772.1| def peptide deformylase [Thermosipho africanus TCF52B] gi|217036909|gb|ACJ75431.1| def peptide deformylase [Thermosipho africanus TCF52B] Length = 165 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 99/162 (61%), Gaps = 6/162 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 ++ DPILR+ ++ +E I + +++L++MY DG+GLAA Q+G+ R +D Sbjct: 5 LYGDPILRKKAKIVEDFEY-IQQIKEDLLKIMYLEDGVGLAAPQVGISLRFFAMD----- 58 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P++ +NP+II S + + +EGCLS+P DV+R ++ +RY D + Q + Sbjct: 59 DGSGPLIIVNPEIIEHSQEKEIGEEGCLSLPGIFEDVERYKWVKLRYQDEYGKVQEKLFE 118 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 G A +QHE DHL+GILFIDHL + ++ ++SK++++R Sbjct: 119 GYSARIVQHERDHLDGILFIDHLPTSVKRRLSTELSKIMRMR 160 >gi|307128595|ref|YP_003880625.1| peptide deformylase [Candidatus Sulcia muelleri CARI] gi|306483057|gb|ADM89927.1| peptide deformylase [Candidatus Sulcia muelleri CARI] Length = 172 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 99/164 (60%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++I+ +PILR+ I++ +I LI NM + MY GIGL+A QIG+ RL +I+ Sbjct: 4 PILIYGNPILRKKCIEIDQSYQNINLLIKNMYDTMYKAKGIGLSAPQIGLSIRLFIIEYN 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +K VFINPKII + +EGCLSIP+ ++KR + + Y D N + Sbjct: 64 NFYKKKFKKVFINPKIIKNYGYDLISKEGCLSIPNIIENIKRKNNLIIEYYDENWKKYRQ 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +GLL+ +QHE DH++G LFIDH+S +K +I K+ + L Sbjct: 124 HFNGLLSIIIQHEYDHIDGKLFIDHISDMKNILIKNKLKIMFNL 167 >gi|294782531|ref|ZP_06747857.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA] gi|294481172|gb|EFG28947.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA] Length = 174 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 98/159 (61%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + D +L+++++ +E +IN + +D+M+E MY TDGIGLAA Q+GV R+ V + + Sbjct: 8 YGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRVFVCEDGNR 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 RK INP I +++ ++EGCLS+P V+R + + Y++ N + A Sbjct: 68 KIRK----IINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVKLNYLNENGETVEEIA 123 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + LLA +QHE DHLNGILF++ +S + + +I KK++ + Sbjct: 124 EDLLAVVVQHENDHLNGILFVEKISPIAKRLIAKKLANM 162 >gi|289677568|ref|ZP_06498458.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 121 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 2/117 (1%) Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 AA Q+ V R+VV+DL + R PMV INP+I +D+ YQEGCLS+P + +V R Sbjct: 1 AATQVNVHKRVVVMDLSED--RSEPMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRP 58 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + V+ +D + + + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K Sbjct: 59 QKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 115 >gi|57242491|ref|ZP_00370429.1| polypeptide deformylase [Campylobacter upsaliensis RM3195] gi|57016776|gb|EAL53559.1| polypeptide deformylase [Campylobacter upsaliensis RM3195] Length = 174 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 102/165 (61%), Gaps = 4/165 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV+K ++ +P+ L S P+EK + ++ L+D+M E M S+ G+GLAA+Q+ V R+ + Sbjct: 1 MVRK-IITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRIFI 59 Query: 61 ---IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ID + +++ + INP I +D+ V EGCLS+PD+ +V+R+ IT++Y D Sbjct: 60 VNIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRNRKITLKYQDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + + + A+ LA +QHE DHL+G LFI+ L KR+ +K+ Sbjct: 120 FGKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKEF 164 >gi|328676180|gb|AEB27050.1| Peptide deformylase [Francisella cf. novicida Fx1] Length = 172 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 5/161 (3%) Query: 9 FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R + + D+ Sbjct: 8 YPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFFI--MYDN 65 Query: 67 AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +NP + + +EGCLS P A V R+ + ++ ++ I Sbjct: 66 LEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFGDEIEIE 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+ Sbjct: 126 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 166 >gi|260912122|ref|ZP_05918678.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295] gi|260633728|gb|EEX51862.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295] Length = 187 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 13/173 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ I+ +LR+V++ I ++ LI NM E M ++DGIGLAA QIG+ RL+V+DL Sbjct: 4 PVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVVDLD 63 Query: 64 -------QDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPDYRADVKRSAFITVRY 114 + +RK FINP I+ +EGCLS+P V R I V+Y Sbjct: 64 VLAETYPEYKGYRK---AFINPHIVEIDKQSPTESLEEGCLSLPGIHEKVTRHTRIRVQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +D + Q + +G L LQHE+DHL+GILF DHLS ++ +I K+ L+Q Sbjct: 121 VDEDLQPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQ 173 >gi|313888509|ref|ZP_07822176.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845538|gb|EFR32932.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 163 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/142 (44%), Positives = 88/142 (61%), Gaps = 5/142 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID--LQDHAH 68 DPILR+ S+ + N + LID+M E M G+GLAA QIG+L R++V+D +D+ Sbjct: 11 DPILRKKSKVVTNYNDRLKLLIDDMYETMDLAPGVGLAAPQIGILKRVIVVDNREEDNDE 70 Query: 69 RKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + PM F INP+II D V EGCLS+P + VKR+ I V+Y D Q +++ A Sbjct: 71 GEKPMRFYMINPEIIE-KDGEEVSMEGCLSVPGKQGTVKRAKHIKVKYNDLEGQEKLMEA 129 Query: 127 DGLLATCLQHELDHLNGILFID 148 + LA +QHE DHL+GIL+ D Sbjct: 130 EDFLARIIQHETDHLDGILYTD 151 >gi|188589463|ref|YP_001920560.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43] gi|251778927|ref|ZP_04821847.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238689669|sp|B2V4B1|DEF_CLOBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188499744|gb|ACD52880.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43] gi|243083242|gb|EES49132.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 147 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/144 (42%), Positives = 90/144 (62%), Gaps = 6/144 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ R +EKI+ ++ LI +MLE MY DG+GLAA Q+G+L RL ++D+ D Sbjct: 9 YGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFIVDIGD--- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+VFINP+I+ +D V +EGCLS+P V R ++ R ++ + I A+ Sbjct: 66 --GPLVFINPEILD-TDGKQVDEEGCLSLPGKTEPVMRPNYVKARALNEKGEEFEIEAEE 122 Query: 129 LLATCLQHELDHLNGILFIDHLSR 152 LLA + HE DHLNG LFID ++ Sbjct: 123 LLARAILHEYDHLNGTLFIDRTTK 146 >gi|218290476|ref|ZP_03494596.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1] gi|218239497|gb|EED06692.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1] Length = 167 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 4/143 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ---DHA 67 DP+LR+ ++ + + I L+D+M E MY DGIGLAA QIG+L RLVVID+Q D Sbjct: 11 DPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVVIDVQPKEDSF 70 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 ++ + +NP+I+ S +E CLS+P V+R+A++ VR + + I Sbjct: 71 QKRAWIELVNPEIVARS-GVQREREACLSLPGLSGVVERAAYVRVRAQNRYGEFFEIEGR 129 Query: 128 GLLATCLQHELDHLNGILFIDHL 150 LLA CLQHE+DHL+GILF D+L Sbjct: 130 DLLARCLQHEIDHLDGILFTDYL 152 >gi|182625873|ref|ZP_02953639.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] gi|177908907|gb|EDT71399.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] Length = 147 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/139 (42%), Positives = 88/139 (63%), Gaps = 4/139 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+ R ++ IN I L+++M+E M+ +G+GLAA Q+G+L R+ V+D D A + Sbjct: 11 DEILRKKCRVVDDINDRIKVLVEDMIETMHENNGVGLAAPQVGILKRIFVVDAMDGAGSR 70 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 VFINP+I+ S + +EGCLS+P VKR+ I ++ +D N ++ A+ L Sbjct: 71 ---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFL 126 Query: 131 ATCLQHELDHLNGILFIDH 149 A +QHE DHL G+LFIDH Sbjct: 127 ARAIQHEYDHLEGVLFIDH 145 >gi|291532990|emb|CBL06103.1| peptide deformylase [Megamonas hypermegale ART12/1] Length = 168 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/138 (42%), Positives = 90/138 (65%), Gaps = 6/138 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L++ ++PIE+I+ I L+D+M E MY +G+GLAA Q+G ++VVID+ + Sbjct: 27 DLVLKQQAQPIERIDKTIRTLLDDMAETMYKANGVGLAAPQVGQSIQVVVIDVGE----- 81 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP II + + EGCLS+P+ +V+R+A ++V Y++ + I A GLL Sbjct: 82 GLLELINPTIIR-KEGTEIDTEGCLSVPEIYGEVERAAKVSVEYLNRRGRRHRITATGLL 140 Query: 131 ATCLQHELDHLNGILFID 148 A CLQHE+DHL+G LFID Sbjct: 141 ARCLQHEIDHLHGRLFID 158 >gi|325298805|ref|YP_004258722.1| Peptide deformylase [Bacteroides salanitronis DSM 18170] gi|324318358|gb|ADY36249.1| Peptide deformylase [Bacteroides salanitronis DSM 18170] Length = 184 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA Q+G+ R+VV++L Sbjct: 4 PIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVVNLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D K+ +INP I+ + EGCLS+P VKR I V Y+D + Sbjct: 64 VLAEDFPEYKDFRRAYINPHILETGGELVSMDEGCLSLPGIHESVKRPDKIHVTYLDEDM 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ Sbjct: 124 NPHDEWVEGYLARVMQHEFDHLEGTMFIDHLSALRKQMIKGKLNAMLK 171 >gi|254372091|ref|ZP_04987584.1| hypothetical protein FTCG_01232 [Francisella tularensis subsp. novicida GA99-3549] gi|151569822|gb|EDN35476.1| hypothetical protein FTCG_01232 [Francisella novicida GA99-3549] Length = 174 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 5/161 (3%) Query: 9 FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R + + D+ Sbjct: 10 YPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFFI--MYDN 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +NP + + +EGCLS P A V R+ + ++ ++ I Sbjct: 68 LEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFGDEIEIE 127 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+ Sbjct: 128 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 168 >gi|88859726|ref|ZP_01134366.1| peptide deformylase [Pseudoalteromonas tunicata D2] gi|88818743|gb|EAR28558.1| peptide deformylase [Pseudoalteromonas tunicata D2] Length = 168 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M P++ DP L + + + + +LID++L+ +Y+TD GIGLAA QIG ++ Sbjct: 1 MAVLPILTAGDPFLAVPATAVTDVKL-VESLIDDLLDTLYATDNGIGLAATQIGRKEAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL A R P+V INP +++ + + CLS+P YRADV R + V +D + Sbjct: 60 VIDLS--AERNQPLVLINPVVVSGEAEEKGEEG-CLSVPGYRADVVRYTHVVVEALDRSG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q I +D LA +QHE+DHL G LFID+LS LKR++ KK+ K V+ Sbjct: 117 QAVRIDSDDFLAIVMQHEIDHLKGTLFIDYLSPLKRNIALKKVKKCVK 164 >gi|212691280|ref|ZP_03299408.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855] gi|237712291|ref|ZP_04542772.1| peptide deformylase [Bacteroides sp. 9_1_42FAA] gi|237726430|ref|ZP_04556911.1| peptide deformylase [Bacteroides sp. D4] gi|265751999|ref|ZP_06087792.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA] gi|212666512|gb|EEB27084.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855] gi|229434956|gb|EEO45033.1| peptide deformylase [Bacteroides dorei 5_1_36/D4] gi|229453612|gb|EEO59333.1| peptide deformylase [Bacteroides sp. 9_1_42FAA] gi|263236791|gb|EEZ22261.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA] Length = 184 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 7/169 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA QIG+ R+V IDL Sbjct: 4 PIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTIDL- 62 Query: 65 DHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D + P +INP I+ + +EGCLS+P VKR I V Y+D Sbjct: 63 DVMSDELPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLDEE 122 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + +G LA +QHE DHL+G +FIDHLS L++ MI K+ +++ Sbjct: 123 LKEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLK 171 >gi|118602931|ref|YP_904146.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567870|gb|ABL02675.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 185 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 20/164 (12%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PD LR ++ + I+ I LI +M E +Y+ DGIGLAA Q+ ++VVIDL+ Sbjct: 4 PILNYPDKRLRTKAKHVNVIDETIQTLIKDMFETIYAKDGIGLAATQVDQHLQVVVIDLE 63 Query: 65 -------------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 + + +P+ FINP+I D + EGCLS+PD++A+V+ Sbjct: 64 PNSQDDYQLFLKNFQRSSHKQSQKHHPLCFINPRIKE-KDGQEKHIEGCLSVPDFQAEVQ 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R+ I V ++ + + A GLLA C+QHELDHL G+LF+D+ Sbjct: 123 RANHIKVEALNEKGEVFTLQATGLLAICIQHELDHLKGVLFVDY 166 >gi|91792258|ref|YP_561909.1| peptide deformylase [Shewanella denitrificans OS217] gi|91714260|gb|ABE54186.1| Peptide deformylase [Shewanella denitrificans OS217] Length = 167 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/149 (42%), Positives = 96/149 (64%), Gaps = 5/149 (3%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAH 68 P+ L+ ++ + I + +LID+ML+ +Y T DGIGLAA Q+G +++ID+ + Sbjct: 10 PNEKLKVTAKKVSNIEQ-VQSLIDDMLDTLYHTEDGIGLAATQVGRNEAIIIIDISET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +P++ INP++I ++ QEGCLS+P Y ADV+R + + V +D + II D Sbjct: 67 RDSPLILINPEVIEGTN-IEKGQEGCLSVPGYYADVERFSRVKVTGLDRHGNEVIIDNDD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDM 157 LA LQHE+DHL G+LFID+LS LK+ M Sbjct: 126 FLAIVLQHEIDHLKGVLFIDYLSPLKQSM 154 >gi|296115525|ref|ZP_06834155.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] gi|295977920|gb|EFG84668.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] Length = 305 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 3/161 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V+FPD LR V+ P+ + + + ++L+ + + GIG+ A IGVL R+VV+DL Sbjct: 142 PIVLFPDQRLRMVAEPVVVFDETLRAMTADLLDTVRAAPGIGITAPHIGVLQRVVVLDLP 201 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P +INP+I+ SD+ + ++EG +S+P V+R A + VRY D + + Sbjct: 202 GGL---GPQTYINPEIVWRSDETARHEEGSISMPGVTEVVERPARVRVRYRDVDGHEMME 258 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGL A C QHE+D L G+ + LS L+R + + K+ Sbjct: 259 DADGLRAVCHQHEIDQLEGVFWTQRLSTLRRSRLMSRYEKI 299 >gi|150006541|ref|YP_001301285.1| peptide deformylase [Bacteroides vulgatus ATCC 8482] gi|294778840|ref|ZP_06744257.1| peptide deformylase [Bacteroides vulgatus PC510] gi|319642942|ref|ZP_07997578.1| peptide deformylase [Bacteroides sp. 3_1_40A] gi|158513745|sp|A6L7J9|DEF_BACV8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149934965|gb|ABR41663.1| peptide deformylase [Bacteroides vulgatus ATCC 8482] gi|294447293|gb|EFG15876.1| peptide deformylase [Bacteroides vulgatus PC510] gi|317385490|gb|EFV66433.1| peptide deformylase [Bacteroides sp. 3_1_40A] Length = 184 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 94/168 (55%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA QIG+ R+V IDL Sbjct: 4 PIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTIDLD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D K+ +INP I+ + +EGCLS+P VKR I V Y+D Sbjct: 64 VMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHEAVKRPDRIHVTYLDEEL 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + +G LA +QHE DHL+G +FIDHLS L++ MI K+ +++ Sbjct: 124 KEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLK 171 >gi|237744608|ref|ZP_04575089.1| polypeptide deformylase [Fusobacterium sp. 7_1] gi|256027377|ref|ZP_05441211.1| polypeptide deformylase [Fusobacterium sp. D11] gi|260494468|ref|ZP_05814598.1| peptide deformylase [Fusobacterium sp. 3_1_33] gi|289765343|ref|ZP_06524721.1| polypeptide deformylase [Fusobacterium sp. D11] gi|229431837|gb|EEO42049.1| polypeptide deformylase [Fusobacterium sp. 7_1] gi|260197630|gb|EEW95147.1| peptide deformylase [Fusobacterium sp. 3_1_33] gi|289716898|gb|EFD80910.1| polypeptide deformylase [Fusobacterium sp. D11] Length = 174 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 99/159 (62%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA Q+GV R+ V D + Sbjct: 8 YGEEVLKQIAKEVEFNEINDEFRKFLDDMVETMYETDGVGLAAPQVGVSKRVFVCDDGNG 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 RK INP ++ +++ ++EGCLS+P V+R + ++Y++ N + A Sbjct: 68 VVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENGEEVEEIA 123 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + LA +QHE DHL+GILF++ +S + + +I KK++ + Sbjct: 124 ENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANI 162 >gi|260437318|ref|ZP_05791134.1| peptide deformylase [Butyrivibrio crossotus DSM 2876] gi|292810230|gb|EFF69435.1| peptide deformylase [Butyrivibrio crossotus DSM 2876] Length = 168 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DPILR+V +P+++I L+ +ML+ MY +G+GLAA Q+G+L R+VV Sbjct: 11 MALRNIRINDDPILRKVCKPVQEITKKTEELVGDMLDTMYEANGVGLAAPQVGILKRIVV 70 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D P++ INP+I+ S QEGCLSIP V R ++ + D Sbjct: 71 IDIGD-----GPIIMINPEILETSGS-QTGQEGCLSIPGKAGIVTRPNYVKAKAYDLQMN 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I + LLA + HEL HL+G L+IDH+ Sbjct: 125 EYTIEGEELLARAICHELGHLDGDLYIDHVE 155 >gi|313203124|ref|YP_004041781.1| peptide deformylase [Paludibacter propionicigenes WB4] gi|312442440|gb|ADQ78796.1| peptide deformylase [Paludibacter propionicigenes WB4] Length = 183 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + +LR+V+ PI ++ LIDNM + MY +G+GLAA Q+G+ RL+VIDL Sbjct: 4 PIYTYGNAVLRKVAEPINADYPELNTLIDNMFQTMYHAEGVGLAAPQVGLPIRLLVIDLA 63 Query: 65 -----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + INP+I+ S++ EGCLSIP V R+ I + Y+D + Sbjct: 64 PFKEDDPELGAFKITMINPEILERSEEEVSGDEGCLSIPGIHETVSRAQSIKITYLDPDF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G A +QHE DHL G LF DH++ ++R ++ K++ +V+ Sbjct: 124 KEHTDVFEGYKARVVQHEYDHLEGHLFTDHVTPIRRQLLKSKLTNIVK 171 >gi|150007311|ref|YP_001302054.1| peptide deformylase [Parabacteroides distasonis ATCC 8503] gi|255014064|ref|ZP_05286190.1| peptide deformylase [Bacteroides sp. 2_1_7] gi|256839600|ref|ZP_05545109.1| polypeptide deformylase [Parabacteroides sp. D13] gi|262382116|ref|ZP_06075254.1| polypeptide deformylase [Bacteroides sp. 2_1_33B] gi|298375297|ref|ZP_06985254.1| peptide deformylase [Bacteroides sp. 3_1_19] gi|301310689|ref|ZP_07216628.1| peptide deformylase [Bacteroides sp. 20_3] gi|158513748|sp|A6L9R8|DEF_PARD8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149935735|gb|ABR42432.1| polypeptide deformylase [Parabacteroides distasonis ATCC 8503] gi|256738530|gb|EEU51855.1| polypeptide deformylase [Parabacteroides sp. D13] gi|262297293|gb|EEY85223.1| polypeptide deformylase [Bacteroides sp. 2_1_33B] gi|298267797|gb|EFI09453.1| peptide deformylase [Bacteroides sp. 3_1_19] gi|300832263|gb|EFK62894.1| peptide deformylase [Bacteroides sp. 20_3] Length = 185 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+ + + K D+ L+ NM E MY+ DG+GLAA Q+G+ RLVVID Sbjct: 4 PVFLYGQPVLRKEAEDVPKDYPDLKQLVANMFETMYNADGVGLAAPQVGLSIRLVVIDGD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D K INP+ + S++ +EGCLS+P V RS + VRY D N Sbjct: 64 VMGDDFPECKGFKRALINPEFLERSEEEIAMEEGCLSLPGIHEKVSRSKTVRVRYWDENW 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G A +QHE +HL G +FID++S ++R + K++ +++ Sbjct: 124 EEHEEVVEGFAARIVQHECEHLTGHVFIDNVSAIRRQLNKGKLNSIIK 171 >gi|325284991|ref|YP_004260781.1| peptide deformylase [Cellulophaga lytica DSM 7489] gi|324320445|gb|ADY27910.1| Peptide deformylase [Cellulophaga lytica DSM 7489] Length = 196 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 12/156 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ + DP+LR+ ++ I + + + L++NM E MY+ G+GLAA Q+G+ R+ ++D Sbjct: 4 PITAYGDPVLRKKAKDINQDHPKLKELLENMWETMYNASGVGLAAPQVGLPLRIFLVDTT 63 Query: 64 -----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + A FIN KII + + + EGCLSIPD R DV R I + Sbjct: 64 PFSDDEDLSAEEQKALNGFKKAFINAKIIEETGEEWAFNEGCLSIPDIREDVSRKENIKI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 Y+D N + +GLLA +QHE DH+ GILF D Sbjct: 124 TYLDENFKEHTEEYNGLLARVIQHEYDHIEGILFTD 159 >gi|32307482|gb|AAP79146.1| peptide deformylase [Bigelowiella natans] Length = 315 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 92/171 (53%), Gaps = 6/171 (3%) Query: 3 KKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 K PL + +PDP LR + I + + L D M +VMY DG GLAA Q+G+ YRL+V Sbjct: 119 KGPLNVIKYPDPRLRTENEKITEFGKPLQELADEMFDVMYDDDGCGLAAPQVGINYRLMV 178 Query: 61 IDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + Q +K+ MV NP+II+ ++ ++EGCLS P R V+R + +R D Sbjct: 179 FNPQGDRRKKDTEMVLANPEIISSGEEKDWFREGCLSFPGIRGQVERPTKVLIRAQDVKG 238 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + +G A QHE DHL+G LF D R+ + + +KLV L D Sbjct: 239 EDIEFELEGFTARVFQHEYDHLSGTLFHD---RMPDKEVAEIHAKLVTLED 286 >gi|315639061|ref|ZP_07894229.1| peptide deformylase [Campylobacter upsaliensis JV21] gi|315480837|gb|EFU71473.1| peptide deformylase [Campylobacter upsaliensis JV21] Length = 177 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 102/167 (61%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV+K ++ +P+ L S P+EK + ++ L+D+M E M S+ G+GLAA+Q+ V R+ + Sbjct: 1 MVRK-IITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRVFI 59 Query: 61 ---IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ID + +++ + INP I +D+ V EGCLS+PD+ +V+R IT++Y + Sbjct: 60 VNIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRHRKITLKYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + A+ LA +QHE DHL+G LFI+ L KR+ +K+ K Sbjct: 120 FGKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKEFKK 166 >gi|256420948|ref|YP_003121601.1| peptide deformylase [Chitinophaga pinensis DSM 2588] gi|256035856|gb|ACU59400.1| peptide deformylase [Chitinophaga pinensis DSM 2588] Length = 192 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 93/172 (54%), Gaps = 13/172 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P+V + P+LR++ I + L+ NM E MY+++G+GLAA QI RL V+D Sbjct: 4 PIVAYGHPVLRKMCEDITPDYPQLEQLLANMWETMYASNGVGLAAPQINRPIRLFVVDSE 63 Query: 63 -----LQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 L++ + P FIN I++ + + Y EGCLSIP R DV R +T Sbjct: 64 QIINSLEEDEKKDFPGDNGIKQAFINAHIVSTAGEEWAYNEGCLSIPKVREDVYRPESVT 123 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 +RY+D Q Q G+ A + HE DH++G LFIDHL LKR MI K+ Sbjct: 124 LRYVDEKFQPQEKTFTGITARVIFHEYDHIDGKLFIDHLKPLKRRMIKGKLE 175 >gi|253583796|ref|ZP_04860994.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725] gi|251834368|gb|EES62931.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725] Length = 173 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 2/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + DP+LR + +E ++ +I ++ NM+E MY G+GLAA Q+G+ R++V+D Sbjct: 8 YGDPVLREKTVEVETVDDNIREILQNMVETMYDKKGVGLAAPQVGISKRMLVLDWTGEGE 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + INP I +++ ++EGCLSIP V+R A I V Y++ + +G Sbjct: 68 ELRKV--INPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIKVDYLNEKGEKITEELEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A +QHE DHL +LF+D +S + + M+TKK+ L Sbjct: 126 FPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQAL 162 >gi|302792493|ref|XP_002978012.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii] gi|300154033|gb|EFJ20669.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii] Length = 198 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 84/146 (57%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PDP LR + I + ++ L+D ML+VMY TDG+GL+A Q+GV RL+V + + Sbjct: 13 IVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNPEG 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + VF+NP I+ F + +EGCLS +ADV+R I V D N + Sbjct: 73 ERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFGTT 132 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 G A QHE DHL G+L+ID ++ Sbjct: 133 FRGWTARIFQHEYDHLEGVLYIDRMT 158 >gi|254881558|ref|ZP_05254268.1| peptide deformylase [Bacteroides sp. 4_3_47FAA] gi|254834351|gb|EET14660.1| peptide deformylase [Bacteroides sp. 4_3_47FAA] Length = 184 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA QIG+ R+V IDL Sbjct: 4 PIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTIDLD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D K+ +INP I+ + +EGCLS+P VKR I V Y+D Sbjct: 64 VMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLDEEL 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G LA +QHE DHL+G +FIDHLS L++ MI K+ +++ Sbjct: 124 NEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLK 171 >gi|323699398|ref|ZP_08111310.1| peptide deformylase [Desulfovibrio sp. ND132] gi|323459330|gb|EGB15195.1| peptide deformylase [Desulfovibrio desulfuricans ND132] Length = 165 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +PD +L + PI +I ++ LI+NM++ MY +DG+GLAA Q+ RL+ +D Sbjct: 5 ICTWPDEVLEAKAEPITEITPELDELIENMVQTMYESDGVGLAAPQVNQSIRLICVDQTG 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R + V INP+I+ + EGCLS P+ V+R + V+ ++ + + + Sbjct: 65 PKERGDLRVLINPEIVECDGEVE-SDEGCLSCPELNLKVRRKERVKVKALNRSGKEICVE 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 GLLA LQHE+DHL G+ D RLK+ M KK Sbjct: 124 TGGLLAIILQHEIDHLEGVTLADRSGRLKKAMYRKK 159 >gi|302766631|ref|XP_002966736.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii] gi|300166156|gb|EFJ32763.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii] Length = 198 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 84/146 (57%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PDP LR + I + ++ L+D ML+VMY TDG+GL+A Q+GV RL+V + + Sbjct: 13 IVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNPEG 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + VF+NP I+ F + +EGCLS +ADV+R I V D N + Sbjct: 73 ERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFGTT 132 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 G A QHE DHL G+L+ID ++ Sbjct: 133 FRGWTARIFQHEYDHLEGVLYIDRMT 158 >gi|220928951|ref|YP_002505860.1| peptide deformylase [Clostridium cellulolyticum H10] gi|219999279|gb|ACL75880.1| peptide deformylase [Clostridium cellulolyticum H10] Length = 159 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/154 (40%), Positives = 92/154 (59%), Gaps = 6/154 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR++SRP++ I+ I+ L+++M + MY DG+GLAA QIG+L R+VVID+ D + Sbjct: 11 DEVLRKISRPVDSIDKKILALLEDMADTMYRADGVGLAAPQIGILKRIVVIDVGDGLYE- 69 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 INP I+ S + EGCLSIP VKR +T+RY D N + I A Sbjct: 70 ----MINPIILEQSGEQD-GMEGCLSIPGVLGKVKRPMKVTLRYTDRNGESITIEAKEFF 124 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A + HELDHL+GIL+ D ++ + ++M K Sbjct: 125 ARAICHELDHLDGILYKDKAHKMYTEKELEEMQK 158 >gi|260432736|ref|ZP_05786707.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] gi|260416564|gb|EEX09823.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] Length = 164 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 99/166 (59%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + P+ +I +I + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTVRPCLPWPDKRLRTKAEPVTEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D A R + NP+I+ S + + E ++P A +KR +TVR++ N + Sbjct: 61 VD--GSAERGRAVRLANPEILHSSIELREHDEASPNLPGVSAKIKRPRAVTVRFL--NEK 116 Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +I D G+ AT +QH++DHLNG ++ D LS++KRDM+ +K K Sbjct: 117 GEIDRRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKK 162 >gi|257466485|ref|ZP_05630796.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563] gi|315917642|ref|ZP_07913882.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563] gi|313691517|gb|EFS28352.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563] Length = 173 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + DP+LR+V+ +E IN +I ++ NMLE MY+TDG+GLAA Q+G+ R+ V D+ Sbjct: 8 YGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMFVCDVGTPEE 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + + INP I +++ +EGCLS+P V R A I + Y + + +G Sbjct: 68 SQVKKI-INPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEKIEEILEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A +QHE DHL LF+D +S + + MI KK+ L Sbjct: 127 FPAIVVQHEYDHLEATLFVDRISPMAKRMIAKKLQAL 163 >gi|194336843|ref|YP_002018637.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1] gi|238693370|sp|B4SBG6|DEF_PELPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194309320|gb|ACF44020.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1] Length = 188 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 3/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ D ILR ++P++ ++S I LI +M E M + GIGLAA Q+G RL+V+D+ Sbjct: 4 PINIYSDDILRLKAKPLKGVDSAIEELIASMFESMRNASGIGLAAPQVGRSIRLLVLDVS 63 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + PMV INP I++ + +EGCLS+P + V R A IT++Y D + + Sbjct: 64 CVSKCEHEKPMVVINPHILSVRGHNDM-EEGCLSVPGVQGYVVRPAAITLKYRDEHFAER 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G++A +QHE+DHL+G LF+D + + R I K+++ L Sbjct: 123 TGEFSGMVARVIQHEIDHLDGTLFVDRMEKRDRKKIQKELTALAS 167 >gi|295109186|emb|CBL23139.1| peptide deformylase [Ruminococcus obeum A2-162] Length = 157 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 6/138 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR++SRP++++ I+ LID+ML+ MY G+GLAA Q+G+L R+VVID+ + Sbjct: 11 DPVLRKISRPVKEVTPKIVTLIDDMLDTMYEAMGVGLAAPQVGILKRIVVIDIGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+I+ S + EGCLS+P V R ++ V+ MD + I LL Sbjct: 66 GPIILINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAMDEDMNEVIYEGTELL 124 Query: 131 ATCLQHELDHLNGILFID 148 A HE+DHL+G ++ D Sbjct: 125 ARAFCHEIDHLDGKMYTD 142 >gi|77464454|ref|YP_353958.1| formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1] gi|77388872|gb|ABA80057.1| Formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1] Length = 167 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 99/165 (60%), Gaps = 4/165 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P V++PD L+ V+ P+E + +I + +M+E M + G GLAA QIGV+ RL V+D Sbjct: 3 RPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVVDC 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQ 122 + +R + NP+I+ S F ++EG ++P A + R +TVR+++ + + Sbjct: 63 SE--NRGKAIRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGEIEE 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + D + AT +QH++DHLNG L+ID LS LKR M+ K K ++ Sbjct: 121 RDFVD-IWATSVQHQIDHLNGRLYIDRLSPLKRKMVVAKSEKYLR 164 >gi|255070681|ref|XP_002507422.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299] gi|226522697|gb|ACO68680.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299] Length = 257 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 2/165 (1%) Query: 5 PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL I +P LR ++ + +SD+ L M ++MY T+G+GLAA Q+GV YR++V + Sbjct: 83 PLAIQKYPHASLRNDNKIVGVFDSDLEKLAQAMFKIMYDTEGVGLAAPQVGVNYRMMVYN 142 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 R +V +NPKI+ FS +++EGCLS P ADV+R + V + + Sbjct: 143 EAGEPGRGKEVVLVNPKIVKFSKTKDLFEEGCLSFPKIYADVERPTSVQVEAQNLRGKKF 202 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + DG A QHE DHL+G+LF D ++ R + ++ L++ Sbjct: 203 KMTLDGFEARVFQHEYDHLDGVLFHDRMTDEVRGTVQGELDALIE 247 >gi|258511303|ref|YP_003184737.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478029|gb|ACV58348.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 167 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 4/143 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ---DHA 67 DP+LR+ ++ + + I L+D+M E MY DGIGLAA QIG+L RLVVID+Q D Sbjct: 11 DPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVVIDVQPKEDSF 70 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 ++ + +NP+I+ S +E CLS+P V+R+A++ VR + + I Sbjct: 71 QKRAWIELVNPEILERS-GVQREREACLSLPGLSGVVERAAYVRVRAQNRYGEFFEIEGR 129 Query: 128 GLLATCLQHELDHLNGILFIDHL 150 LLA CLQHE+DHL+GILF D+L Sbjct: 130 DLLARCLQHEIDHLDGILFTDYL 152 >gi|281420284|ref|ZP_06251283.1| peptide deformylase [Prevotella copri DSM 18205] gi|281405586|gb|EFB36266.1| peptide deformylase [Prevotella copri DSM 18205] Length = 185 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 6/169 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ I+ P+LR+V+ I D+ LI+NM E + S++GIGLAA QIG+ RLVVIDL Sbjct: 4 PIYIYGQPVLRKVAEDITPDYPDLKVLINNMYETLDSSNGIGLAAPQIGLPIRLVVIDLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFS-VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D K FIN I+ ++ + +EGCLSIP V R I V+YMD + Sbjct: 64 VLSEDFPEYKGFRHAFINAHILERDEENTDSSEEGCLSIPGINEKVVRPTRIHVKYMDED 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G LA +QHE DHL G +F+D +S L+++MI K+ +++ Sbjct: 124 FNEHDEWIEGYLARVMQHEFDHLEGTMFVDRVSPLRKNMIAGKLKSIIK 172 >gi|156097168|ref|XP_001614617.1| formylmethionine deformylase [Plasmodium vivax SaI-1] gi|148803491|gb|EDL44890.1| formylmethionine deformylase, putative [Plasmodium vivax] Length = 186 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 95/163 (58%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V++PDP+LR+ + + ++ L+ +M VMY + G+GLAA Q+ + R++V + L Sbjct: 12 IVLYPDPVLRKKCDEVVHFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISRRIIVWNALY 71 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + ++N VFINP I+ S S EGCLS PD V R + +++ Y D + + Sbjct: 72 EKKKKENERVFINPSIVEPSLVRSKLVEGCLSFPDIEGKVDRPSVVSISYYDLDGNKHLK 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ A QHE DHL+G+LFID S+ +R + K++ L++ Sbjct: 132 ILKGIHARIFQHEYDHLDGVLFIDRFSQSERHKVRAKLNALIR 174 >gi|163738221|ref|ZP_02145637.1| peptide deformylase [Phaeobacter gallaeciensis BS107] gi|161388837|gb|EDQ13190.1| peptide deformylase [Phaeobacter gallaeciensis BS107] Length = 165 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + + +I + + L +M++ M + G+GLAA QIGVL RL V Sbjct: 1 MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+I+ S ++E ++P A +KR +TVRYMD Sbjct: 61 VD--GSSERGRAVRLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETG- 117 Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + D G+ AT +QH++DHLNG ++ D LS++KRDM+ +K KL Sbjct: 118 -ATVERDFVGIEATSVQHQIDHLNGKMYFDKLSKVKRDMLIRKAKKL 163 >gi|303242018|ref|ZP_07328510.1| peptide deformylase [Acetivibrio cellulolyticus CD2] gi|302590436|gb|EFL60192.1| peptide deformylase [Acetivibrio cellulolyticus CD2] Length = 160 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/140 (42%), Positives = 90/140 (64%), Gaps = 6/140 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ S+ +EKI+ I+NL+D+M E MY ++G+GLAA Q+G+L R+VVID+ + + Sbjct: 12 DDVLRKKSKVVEKIDEKILNLLDDMAETMYQSNGVGLAAPQVGILKRVVVIDVGEGLIK- 70 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 INP+II+ + EGCLS+PD +VKR+ + V+ +D + GLL Sbjct: 71 ----LINPQIISMEGEQQDI-EGCLSVPDIIGEVKRANKVKVKAIDEKGNSIELDGTGLL 125 Query: 131 ATCLQHELDHLNGILFIDHL 150 A HE+DHL+GILFID + Sbjct: 126 ARAFCHEIDHLDGILFIDKI 145 >gi|257452629|ref|ZP_05617928.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R] gi|317059168|ref|ZP_07923653.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R] gi|313684844|gb|EFS21679.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R] Length = 173 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + DP+LR+V+ +E IN +I ++ NMLE MY+TDG+GLAA Q+G+ R+ V D+ Sbjct: 8 YGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMFVCDVGTPEE 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + + INP I +++ +EGCLS+P V R A I + Y + + +G Sbjct: 68 SQVKKI-INPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEKIEEILEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A +QHE DHL LF+D +S + + MI KK+ L Sbjct: 127 FPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQAL 163 >gi|195952867|ref|YP_002121157.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] gi|195932479|gb|ACG57179.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] Length = 164 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/155 (40%), Positives = 99/155 (63%), Gaps = 10/155 (6%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++++P+P+L+ S+ + KI+ +I+ I+N+ E MYS D G+A+ Q+GVL +VV+D Sbjct: 5 ILVYPNPLLKEKSKDVNKIDDNIIKHIENLKETMYSKDFCTGIASSQVGVLQNIVVMDAS 64 Query: 65 DHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 RK P + INP II S+D +++EGCLS+P+Y A+++R ++V+ +D Sbjct: 65 --RFRKPPKNHHGLITLINPVIIK-SEDSIIFREGCLSVPEYTANIQRYKHVSVKALDEK 121 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I+ +G A QHELDHLNGILF+D L+ L Sbjct: 122 ENEIILDLEGPEAVLFQHELDHLNGILFLDRLTSL 156 >gi|299143971|ref|ZP_07037051.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518456|gb|EFI42195.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 158 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 87/138 (63%), Gaps = 5/138 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR++SR + K + + LI++M E M +G+GLAA Q+GVL R++ +D + HR Sbjct: 11 DPVLRKISREVVKFDDRLKTLIEDMYETMDKAEGVGLAAPQVGVLRRVITVDDRTE-HR- 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 INP+II F + EGCLS+P+ + VKR I V+Y+D N + + I A L Sbjct: 69 --FALINPEII-FESGTQLGYEGCLSLPNKQGKVKRFNEIKVKYLDENGEKKEIEAKEYL 125 Query: 131 ATCLQHELDHLNGILFID 148 A LQHE+DHLNGIL+ D Sbjct: 126 ARILQHEIDHLNGILYSD 143 >gi|226226031|ref|YP_002760137.1| peptide deformylase [Gemmatimonas aurantiaca T-27] gi|226089222|dbj|BAH37667.1| peptide deformylase [Gemmatimonas aurantiaca T-27] Length = 196 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/148 (41%), Positives = 87/148 (58%), Gaps = 6/148 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + P+LR+ ++ +E + ++ L+DNM + M + G+GLAA Q+G L RL V+D D Sbjct: 8 VLGSPVLRQETQRVESVTPELRRLVDNMFDTMEAAKGVGLAAPQVGRLERLAVVDADDVR 67 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 +V INP+II + +EGCLSIP+ ADV R A + VR D + + A Sbjct: 68 -----LVVINPEII-LREGLERGEEGCLSIPEVYADVDRPARVIVRAQDIDLNWYEVDAA 121 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKR 155 LL CLQHE+DHL G LF D LS LK+ Sbjct: 122 NLLGRCLQHEIDHLFGKLFTDRLSLLKK 149 >gi|325270161|ref|ZP_08136768.1| peptide deformylase [Prevotella multiformis DSM 16608] gi|324987462|gb|EGC19438.1| peptide deformylase [Prevotella multiformis DSM 16608] Length = 186 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 16/174 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVIDL Sbjct: 4 PIYTYGQPVLRKVAEDIPLDYPDLPELIQNMFETNTASDGVGLAAPQIGKSVRVVVIDLD 63 Query: 64 ---------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113 +D H FIN I+ D + +EGCLS+P V R+ I V+ Sbjct: 64 VLSDTFPEYKDFRH-----AFINGHILELDDSETETMEEGCLSLPGIHESVTRAKRIHVK 118 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Y+D + + + DG LA +QHE DHL G +F D LS +R MI+ K+ L+Q Sbjct: 119 YLDEHLKEHDEWVDGYLARVIQHEFDHLEGRVFTDRLSAFRRQMISGKLKALLQ 172 >gi|291280498|ref|YP_003497333.1| polypeptide deformylase [Deferribacter desulfuricans SSM1] gi|290755200|dbj|BAI81577.1| polypeptide deformylase [Deferribacter desulfuricans SSM1] Length = 167 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 101/165 (61%), Gaps = 5/165 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVID 62 + ++ +P+P+L+ +S+ + ++ DI N+I ++++ M +T G+AA QIG L R++ ID Sbjct: 4 REVLTYPNPLLKEISKEVTELTDDIKNIIKDLVDTMDATSHSTGIAAPQIGELVRIIAID 63 Query: 63 LQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + KN V INP+I+ + + +EGC+S+PDY +V R+ + V+++D N Sbjct: 64 PGKNKKCKNHHGKRVLINPEIVKW-EGLIQSREGCMSVPDYTGNVNRAEKVVVQFLDENL 122 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q A+G A LQHE+DHL+GILFID + + D+ +K K Sbjct: 123 QPGAFEAEGFEAILLQHEIDHLDGILFIDRIISKRTDLFRRKKYK 167 >gi|260655752|ref|ZP_05861221.1| peptide deformylase [Jonquetella anthropi E3_33 E1] gi|260629368|gb|EEX47562.1| peptide deformylase [Jonquetella anthropi E3_33 E1] Length = 162 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 8/158 (5%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQ-D 65 ++PDP+LR+ + P+ + + L+++M +M+ DG+GLAA QIG+ ++ V+ D + D Sbjct: 9 VYPDPVLRQPTEPVTVFDEALRRLLEDMAVIMHEADGVGLAAPQIGIAKKIAVVYDAETD 68 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H + INP++I S +EGCLS P VKR +TVR D + Q Sbjct: 69 HLYH-----LINPEVIA-SSGGQTGEEGCLSFPGIFGQVKRPLKVTVRCQDGDGNLQEYT 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 A G +A HE+DHLNG L ID+ S LKR+++ KKM Sbjct: 123 AQGFIARAFTHEIDHLNGRLLIDNFSPLKRNLVLKKMG 160 >gi|330837393|ref|YP_004412034.1| peptide deformylase [Spirochaeta coccoides DSM 17374] gi|329749296|gb|AEC02652.1| peptide deformylase [Spirochaeta coccoides DSM 17374] Length = 167 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/146 (40%), Positives = 88/146 (60%), Gaps = 4/146 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V + +LRR + P++ ++ + L+D+M + + G+GLAA Q+GV RL ++D++ Sbjct: 4 IVTLGEDVLRRRAEPVKVFDAALRLLVDDMFDSLAQERGVGLAAPQVGVSQRLFIVDIEG 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 VFINP+II S + + Y+EGCLSIP DV R IT++ D + + Sbjct: 64 G----EKGVFINPEIIETSMEQTPYEEGCLSIPGIWHDVVRPQRITMQAQDVTGKFFTVK 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 ADG+ A LQHE DHLNG LFID L+ Sbjct: 120 ADGMFARVLQHEYDHLNGTLFIDRLN 145 >gi|156743414|ref|YP_001433543.1| peptide deformylase [Roseiflexus castenholzii DSM 13941] gi|254767599|sp|A7NPM9|DEF_ROSCS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|156234742|gb|ABU59525.1| peptide deformylase [Roseiflexus castenholzii DSM 13941] Length = 185 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 16/161 (9%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-- 70 IL P+ N + L+ +M E M++ +G+GLAA QIGV RL VI + + Sbjct: 17 ILTTRCHPVRMPNPSLKQLVADMFETMHAANGVGLAAPQIGVTQRLAVIAIPPMMEERPD 76 Query: 71 ---------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 V INP+I+ SD V EGCLS+P + +V R+A++TV Y D N + Sbjct: 77 GTKVEVAPEQTFVLINPEIVKASDQEDVGLEGCLSLPGWYGEVPRAAWVTVEYTDLNGRR 136 Query: 122 Q-IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 Q I A GLLA LQHE+DHL+G+LF + + RD+ T K Sbjct: 137 QRIRRATGLLARALQHEIDHLDGVLFTERI----RDLSTLK 173 >gi|169333675|ref|ZP_02860868.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM 17244] gi|169259669|gb|EDS73635.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM 17244] Length = 174 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 6/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D ILR+ S+ ++KI + LID+M E MY G+GLAAVQ+GVL R+V Sbjct: 1 MALRTIRITGDEILRKTSKEVKKITPRTLELIDDMFETMYDAQGVGLAAVQVGVLRRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D P+V INP+II S++ + EGCLS+P + R + V+ +D + Sbjct: 61 IDVGD-----GPVVLINPEIIYKSEEEYLEAEGCLSVPGEQGYTYRPEEVRVKALDRDGN 115 Query: 121 HQIIYA-DGLLATCLQHELDHLNGILFID 148 +II + D + + HEL+HL+GIL+ D Sbjct: 116 ERIIESKDRFFSKAICHELEHLDGILYTD 144 >gi|256370663|ref|YP_003108488.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM] gi|256009455|gb|ACU52815.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM] Length = 180 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 96/163 (58%), Gaps = 2/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P++I+ P+LR+ IEK NS+ +N LI NM + M GIGLAA QIG+ RL +I+ Sbjct: 4 PILIYGHPLLRKRCLEIEKFSNSNQINSLIQNMYDTMGQAQGIGLAAPQIGISLRLFIIE 63 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + +K VFINPKI+ + + +EGCLS+P+ ++ R + + Y D N + Sbjct: 64 YNNFYKKKFKQVFINPKILKIYGSYLITKEGCLSLPNIIENIIRKNHLIIEYYDENWKKY 123 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GLL+ +QHE DH+ G F+DH+S K+ + ++ K+ Sbjct: 124 KQHFHGLLSIIIQHEYDHIEGKFFLDHISDQKKLFLHNQLKKI 166 >gi|168182587|ref|ZP_02617251.1| peptide deformylase [Clostridium botulinum Bf] gi|237795949|ref|YP_002863501.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|182674255|gb|EDT86216.1| peptide deformylase [Clostridium botulinum Bf] gi|229263426|gb|ACQ54459.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 147 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/143 (40%), Positives = 93/143 (65%), Gaps = 8/143 (5%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ SR IEKI+ I+ L+++M+E MYS +G+GLAA Q+G+L R VVID+ + Sbjct: 9 YGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVVIDVGEGLI 68 Query: 69 RKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + INP+II T + V EGCLS+P + +V+R + V+ ++ + ++ + Sbjct: 69 K-----LINPEIIETEGNQKDV--EGCLSVPGEQGEVERPYKVKVKALNEKGEEIVLEGE 121 Query: 128 GLLATCLQHELDHLNGILFIDHL 150 GLLA HE+DHL+G+LF+D + Sbjct: 122 GLLARAFCHEIDHLDGVLFVDKV 144 >gi|262038785|ref|ZP_06012139.1| peptide deformylase [Leptotrichia goodfellowii F0264] gi|261747196|gb|EEY34681.1| peptide deformylase [Leptotrichia goodfellowii F0264] Length = 170 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 94/158 (59%), Gaps = 5/158 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ P LR S ++ ++ ++ ++D M+E M +G+GLAA Q+ + R V+++++ Sbjct: 3 IVLYEHPTLRTKSTEVDIVDDELRKILDEMVETMRKANGVGLAANQVDIPKRFFVLEVEN 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +NP+II SD+ Y+EGCLSIP V R + I V+Y++ + I Sbjct: 63 KVKK-----IVNPEIIESSDEIIEYEEGCLSIPGIYKKVNRPSEIKVKYLNEKGEEVIEE 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + A QHELDHL+G+LFID +S L + +I+KK+ Sbjct: 118 LKEMWARAFQHELDHLDGVLFIDRISVLNKRLISKKLE 155 >gi|91204615|emb|CAJ70843.1| strongly similar to peptide deformylase [Candidatus Kuenenia stuttgartiensis] Length = 170 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/162 (40%), Positives = 95/162 (58%), Gaps = 3/162 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P P+LR+ ++P+ +IN+D+ + M+E+M GIGLAA Q+G RL VID+ Sbjct: 3 IVTYPAPVLRQKAKPLTEINADVYKKAEKMVELMRRVHGIGLAAPQVGWSVRLFVIDVVG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + N VFINP I+ + + S +EGCLS P V R+ I V + N Q + Sbjct: 63 NNVDDN--VFINPSIMEEAGETS-NEEGCLSFPGIMGKVIRTHKIKVCAYNLNGQKIEVV 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + LLA QHELDHLNG LFID +S R ++++ +L Q Sbjct: 120 LEDLLARAWQHELDHLNGCLFIDRMSPASRLAASQQLKELEQ 161 >gi|170748510|ref|YP_001754770.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] gi|170655032|gb|ACB24087.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] Length = 165 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV+FPDP L R + P++ + L D++ + + + IGL A IGV RLVV Sbjct: 1 MPARPLVLFPDPRLTRPAEPVDAFGPSLQALADDVRDTLMAESAIGLTAPHIGVPARLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + + +++NP + S + + + EG +S+P R + R A I + Y D + Sbjct: 61 VRMSPNESAR---IYVNPVVSWASPETATHDEGSVSMPGVRERIARPARIRLSYRDLDGS 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +G A LQHE+D L+G+ +I LSRLKR+ + K+ K Sbjct: 118 AREAETEGFPAAVLQHEIDQLDGVFWIARLSRLKRERLLKRFEK 161 >gi|332298812|ref|YP_004440734.1| Peptide deformylase [Treponema brennaborense DSM 12168] gi|332181915|gb|AEE17603.1| Peptide deformylase [Treponema brennaborense DSM 12168] Length = 187 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 4/138 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 + +LRR S P+ ++ +I L +M ++M G+GLAA Q+GVL RL VI D R Sbjct: 8 EQLLRRKSEPVNEVTDEIRRLTQDMFQLMDEAQGVGLAAPQVGVLKRLFVITADDGVRR- 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 VFINP+II S + Y+EGCLSIP + R A +TV+ ++ + + + ADG L Sbjct: 67 ---VFINPQIIATSSETCDYEEGCLSIPQIYEHITRPAKVTVQAINEHGKPFTLEADGFL 123 Query: 131 ATCLQHELDHLNGILFID 148 A +QHE DHL+GIL+ID Sbjct: 124 ARIIQHENDHLDGILYID 141 >gi|153809825|ref|ZP_01962493.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174] gi|149834003|gb|EDM89083.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174] Length = 156 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 56/138 (40%), Positives = 85/138 (61%), Gaps = 6/138 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR++S+P++++ I+ LID+ML+ MY G+GLAA Q+G+L R+VVID+ + Sbjct: 11 DPVLRKISKPVKEVTPKIITLIDDMLDTMYEAMGVGLAAPQVGILKRIVVIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I+ S + EGCLS+P V R ++ V+ MD I LL Sbjct: 66 GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAMDEEMNEVIYEGTELL 124 Query: 131 ATCLQHELDHLNGILFID 148 A HE+DHL+G ++ D Sbjct: 125 ARAFCHEIDHLDGKMYTD 142 >gi|306845817|ref|ZP_07478385.1| peptide deformylase [Brucella sp. BO1] gi|306273709|gb|EFM55547.1| peptide deformylase [Brucella sp. BO1] Length = 164 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 101/165 (61%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + D+ L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEDLRQLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELDRTA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162 >gi|302877267|ref|YP_003845831.1| peptide deformylase [Gallionella capsiferriformans ES-2] gi|302580056|gb|ADL54067.1| peptide deformylase [Gallionella capsiferriformans ES-2] Length = 167 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L +++ + ++N L+ +M E MY+ G+GLAA Q+ V +++V+D+ + Sbjct: 9 YPDERLHTIAKKVVQVNDVTRKLVQDMAETMYAAPGVGLAATQVNVHEQIIVVDVSET-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +VFINP+I+ S + +EGCLS+P +V+R+ I+VR ++ + + A+G Sbjct: 67 HDELLVFINPEILHRSGEQE-GEEGCLSVPGIYENVRRADKISVRALNQQGESFTLDAEG 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LA C+QHE+DHL+G +F+++LS+LK+ + K+ K Sbjct: 126 FLAVCIQHEVDHLHGRVFVEYLSQLKQSRLRAKLKK 161 >gi|310659160|ref|YP_003936881.1| defa [Clostridium sticklandii DSM 519] gi|308825938|emb|CBH21976.1| DefA [Clostridium sticklandii] Length = 152 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 88/141 (62%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ SR ++KIN I+ L+++M++ MY DG+GLAA Q+GVL R+VVID+ D Sbjct: 11 DEVLRKKSRAVDKINDKILELVEDMIDTMYEADGVGLAAPQVGVLKRVVVIDVGD----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I+ S + EGCLS+P V R ++ + D + ++ A+ L Sbjct: 66 GPIVMINPEILESSGE-QTDDEGCLSLPGKFGCVTRPYYVKAKAYDTDMNEFVVEAEELF 124 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A + HE+DHL+GILF D + Sbjct: 125 ARAICHEIDHLDGILFKDKVE 145 >gi|221054422|ref|XP_002258350.1| formylmethionine deformylase [Plasmodium knowlesi strain H] gi|193808419|emb|CAQ39122.1| formylmethionine deformylase, putative [Plasmodium knowlesi strain H] Length = 242 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V++PDP+LR+ + + ++ L+ +M VMY + G+GLAA Q+ + R++V + L Sbjct: 68 IVLYPDPVLRKKCNEVVNFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISMRIIVWNALY 127 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + ++N VFINP I+ S S EGCLS PD V R +++ Y D + + Sbjct: 128 EKKKKENERVFINPSIVEPSLIRSKLVEGCLSFPDIEGKVDRPRVVSISYYDLDGNKHLK 187 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ A QHE DHL+GILFID S+ ++ + K++++++ Sbjct: 188 ILKGIHARIFQHEYDHLDGILFIDRFSQSEKHKVRAKLNEMIR 230 >gi|11320966|gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana] Length = 273 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 89/160 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 83 IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L A QHE DHL G+LF D ++ D I +++ L Sbjct: 203 LSSLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 242 >gi|160889625|ref|ZP_02070628.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492] gi|270293967|ref|ZP_06200169.1| polypeptide deformylase [Bacteroides sp. D20] gi|317479180|ref|ZP_07938317.1| polypeptide deformylase [Bacteroides sp. 4_1_36] gi|156860617|gb|EDO54048.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492] gi|270275434|gb|EFA21294.1| polypeptide deformylase [Bacteroides sp. D20] gi|316904668|gb|EFV26485.1| polypeptide deformylase [Bacteroides sp. 4_1_36] Length = 185 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 97/168 (57%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+V+ I ++ LI+NM E M + +G+GLAA QIG+ R+V I+L Sbjct: 4 PIYVYGQPVLRKVAEDIAPDYPNLKELIENMFETMDNAEGVGLAAPQIGLPIRVVTINLD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D K+ +IN I+ S + EGCLS+P VKR I V+Y+D N Sbjct: 64 VLSDDLPEYKDFRKAYINAHILEVSGEEVSMDEGCLSLPGIHESVKRGNKIRVQYLDENL 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ Sbjct: 124 EPHDEIIEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLK 171 >gi|150390546|ref|YP_001320595.1| peptide deformylase [Alkaliphilus metalliredigens QYMF] gi|167012061|sp|A6TRW8|DEF_ALKMQ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149950408|gb|ABR48936.1| peptide deformylase [Alkaliphilus metalliredigens QYMF] Length = 147 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 60/140 (42%), Positives = 89/140 (63%), Gaps = 6/140 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR+ SR ++KI+S I L+D+M+E MY DG+GLAA Q+G+L +++VID+ + Sbjct: 11 DPVLRKKSRVVDKIDSRIHTLLDDMIETMYEADGVGLAAPQVGILKQVIVIDVGEGV--- 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+II + EGCLS+P + +V+R A + VR ++ + I LL Sbjct: 68 --IELINPEIIKETGS-QCDVEGCLSLPGHSGEVERPAIVKVRGLNRQGKMVEIQGTELL 124 Query: 131 ATCLQHELDHLNGILFIDHL 150 A L HE+DHLNGILF D + Sbjct: 125 ARALCHEIDHLNGILFTDKI 144 >gi|288928223|ref|ZP_06422070.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108] gi|288331057|gb|EFC69641.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108] Length = 187 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 13/173 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ I+ +LR+V++ I ++ LI NM E M ++DGIGLAA QIG+ RL+V+DL Sbjct: 4 PVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVVDLD 63 Query: 64 -------QDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPDYRADVKRSAFITVRY 114 + +RK FINP I+ + +EGCLS+P V R I ++Y Sbjct: 64 VLAETYPEYKGYRK---AFINPHIVEIDEQSPTESLEEGCLSLPGIHEKVTRHTRIRMQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +D + + + +G L LQHE+DHL+GILF DHLS ++ +I K+ L+Q Sbjct: 121 VDEDLKPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQ 173 >gi|160880624|ref|YP_001559592.1| peptide deformylase [Clostridium phytofermentans ISDg] gi|189083068|sp|A9KM99|DEF_CLOPH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|160429290|gb|ABX42853.1| peptide deformylase [Clostridium phytofermentans ISDg] Length = 163 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 61/151 (40%), Positives = 93/151 (61%), Gaps = 3/151 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ + I D IL + S+ IE++ I LID+ML+ MY G+GLAA Q+GVL RLVV Sbjct: 1 MAKRNIRIMGDSILNKTSKVIEEVTPKIDTLIDDMLDTMYDAGGVGLAAPQVGVLKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P++ INP+II+ +D EGCLS+P V R ++ V+ D + + Sbjct: 61 IDVSLEGNE--PIILINPEIIS-TDGEQTGDEGCLSLPGKAGIVTRPNYVKVKAYDRHMK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA HE+DHL+GIL+++ ++ Sbjct: 118 PFEVEGEGLLARAFCHEIDHLDGILYVEKVN 148 >gi|115379822|ref|ZP_01466890.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|310817741|ref|YP_003950099.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|115363181|gb|EAU62348.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|309390813|gb|ADO68272.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 168 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 91/160 (56%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +VI+P +L ++P+ + L+ M E M GIG+AA Q+GV R+ ++ +D Sbjct: 5 IVIWPHKVLTSATQPVMDFGPALEKLLAEMAESMAEAKGIGIAANQVGVSLRVALVGRED 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +NP+++ S ++ +EGCLS+P+ V R + VRY D Q Sbjct: 65 GTF----FEIVNPQLLERSGKVTL-EEGCLSVPEEWEKVPRFEKVKVRYQDKAGQWHETE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A+G LA QHE+DHL+G +F+DHLS LKR +I ++M+KL Sbjct: 120 AEGRLAHVFQHEIDHLDGHVFVDHLSNLKRTLIRERMNKL 159 >gi|126463294|ref|YP_001044408.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|126104958|gb|ABN77636.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] Length = 167 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P V++PD L+ V+ P+E + +I + +M+E M + G GLAA QIGV+ RL V+D Sbjct: 3 RPFVMYPDKRLKTVAAPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVVDC 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + R + NP+I+ S F ++EG ++P A V R +TVR+++ + + Sbjct: 63 SE--SRGKAIRLANPEILHASGQFREHEEGSPNLPGASAVVSRPRAVTVRFLNEAGETEE 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + AT +QH++DHL+G L+ID LS LKR M+ K K ++ Sbjct: 121 RDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164 >gi|254486314|ref|ZP_05099519.1| peptide deformylase [Roseobacter sp. GAI101] gi|214043183|gb|EEB83821.1| peptide deformylase [Roseobacter sp. GAI101] Length = 159 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 89/152 (58%), Gaps = 2/152 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +VI+PD L +V +P+E I I LI +M + MY+ G GLAA Q+G R+ V D Sbjct: 6 IVIWPDARLTQVCQPVEGITPGITQLIADMFDTMYAAPGRGLAAPQVGRSERIFVFDAGW 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ +NP+II S+ +EGCLSIP+ D++R+A +T+R+ D H+ + Sbjct: 66 KDGAPTPVACVNPEIIDLSEGRLTGEEGCLSIPNTPMDIERAAQVTLRWTDPEGTHERTF 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR-LKRD 156 G A +QHE DHL+GI+ D + + +K+D Sbjct: 126 T-GAEAVIVQHEYDHLDGIVIYDRVEKDVKKD 156 >gi|295111635|emb|CBL28385.1| peptide deformylase [Synergistetes bacterium SGP1] Length = 182 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 6/156 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP+L++V+ P+ + ++ + + M VM +DG+GLAA Q+GVL ++ V+D ++ A+ Sbjct: 29 YPDPVLKKVAEPVTVFDDELADFVGKMRTVMRVSDGVGLAAPQVGVLRQIAVVDYKEEAY 88 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 INP+++ + + CLS P A V+R ++ V D + + A G Sbjct: 89 D-----LINPRVLEQGGEQEGEEG-CLSFPGIYAMVRRPEWVRVEAQDVRGEVHVHEASG 142 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LA HE+DHLNG LFID+LS LKR I +KM K Sbjct: 143 FLARAFLHEMDHLNGKLFIDYLSPLKRGAIRRKMMK 178 >gi|86151304|ref|ZP_01069519.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94] gi|315123790|ref|YP_004065794.1| peptide deformylase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841651|gb|EAQ58898.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94] gi|315017512|gb|ADT65605.1| peptide deformylase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 175 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV+K ++ +P+P L S+ + K ++++ L+D+M E M +++G+GLAA+Q+ + R+++ Sbjct: 1 MVRK-IITYPNPRLFLNSKIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLL 59 Query: 61 IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ D +++ + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 60 VNIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 120 FGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157 >gi|288817601|ref|YP_003431948.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|288787000|dbj|BAI68747.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|308751198|gb|ADO44681.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] Length = 169 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 98/165 (59%), Gaps = 6/165 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ FP P+L+ ++ ++ I+ D+ +++ +M E MY +G+GLAA QIG+ ++VID Sbjct: 3 REIIKFPHPVLKMPTQKVDVIDKDVQSIVGDMFETMYHAEGVGLAANQIGISLSIMVIDT 62 Query: 64 QDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +P+ V INP+++ + Y+EGCLS P +V R + + V+ +D N + Sbjct: 63 S--KKEDSPLLKAVMINPELLEAEGEVK-YKEGCLSFPGLSVEVSRYSKVKVKALDINGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++ +G A QHE+DHL GI FID ++ +KR + K +KL Sbjct: 120 EKLYLLEGFPAIVFQHEMDHLMGITFIDRVNGIKRRLALDKYAKL 164 >gi|283778512|ref|YP_003369267.1| peptide deformylase [Pirellula staleyi DSM 6068] gi|283436965|gb|ADB15407.1| peptide deformylase [Pirellula staleyi DSM 6068] Length = 222 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 1/150 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P P LR+V++PI+++++++ ++ M ++MY GIGLAA Q+ + RL VI+L Sbjct: 33 IITYPHPTLRKVAKPIKRVDAELRAMVAQMFDLMYEAKGIGLAANQVDLPLRLFVINLTA 92 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +VFINP +++ + +EGCLS+P V R + V + Q Sbjct: 93 EKGKGEELVFINP-VLSHPKGSAEAEEGCLSLPGVYGQVVRPKTVQVNAYNLQGQEISAE 151 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 GLLA C+QHE DHL+G++F D +S R Sbjct: 152 VGGLLARCIQHENDHLDGVMFPDRMSESSR 181 >gi|187935113|ref|YP_001885413.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] gi|187723266|gb|ACD24487.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] Length = 147 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 60/144 (41%), Positives = 90/144 (62%), Gaps = 6/144 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ R +EKI+ ++ LI +MLE MY DG+GLAA Q+G+L RL ++D+ + Sbjct: 9 YGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFIVDIGE--- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+VFINP+I+ +D V +EGCLS+P V R ++ R ++ + I A+ Sbjct: 66 --GPLVFINPEILD-TDGKQVDEEGCLSLPGKTEPVMRPNYVKARALNEKWEEFEIEAEE 122 Query: 129 LLATCLQHELDHLNGILFIDHLSR 152 LLA + HE DHLNG LFID ++ Sbjct: 123 LLARAILHEYDHLNGTLFIDRTTK 146 >gi|332975391|gb|EGK12285.1| peptide deformylase [Desmospora sp. 8437] Length = 173 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 95/151 (62%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M ++ +++F DPILR+ +RP+++I I L+D++ + +Y+ G LAA Q+G+L+R++ Sbjct: 1 MAERNILLFGDPILRKRARPVDQITPKIEKLLDDLADTLYAKPGRAALAAPQVGMLWRVI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID + + INP+I S V E CLS P Y VKR+ ++ V+ ++ + Sbjct: 61 VIDGAE-----GLIELINPEI-EESHGEQVGPEACLSYPGYTGIVKRAKYVKVKTLNRHG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + + LA C+QHE+DHLNG+LFIDH+ Sbjct: 115 ETWFLEGENHLARCIQHEIDHLNGVLFIDHI 145 >gi|150016029|ref|YP_001308283.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] gi|149902494|gb|ABR33327.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] Length = 152 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 9/153 (5%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ R ++KI+ ++ LI++M E MY DG+GLAA Q+G+L RL V+D+ D Sbjct: 9 YGDDVLRKKCREVDKIDDRLLTLIEDMKETMYDADGVGLAAPQVGILKRLFVVDIGD--- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+VFINP+II S + +EGCLS+P +V R ++ R ++ + I A+ Sbjct: 66 --GPLVFINPEIIETSGS-QIDEEGCLSLPGETEEVMRPNYVRARALNEKGEEFEIEAEE 122 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 LLA + HE DHLNG LFID R+K +KK Sbjct: 123 LLARAILHEYDHLNGTLFID---RVKGRGASKK 152 >gi|288801322|ref|ZP_06406776.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039] gi|288331705|gb|EFC70189.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039] Length = 187 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 96/171 (56%), Gaps = 13/171 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V++ I ++ LI NM E M + DGIGLAA QIG RL VIDL Sbjct: 4 PIYVYGQPVLRKVAQDITPDYPELKELIANMFETMDNADGIGLAAPQIGRSIRLSVIDLD 63 Query: 64 -------QDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPDYRADVKRSAFITVRY 114 + RK FINP I+ ++ + +EGCLSIP +V R I V++ Sbjct: 64 VLSEYYPEYKGFRK---AFINPHILEVDEESEMLTSEEGCLSIPGIHENVDRRTRIHVKW 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 MD + +G LA +QHE DHL+G+LF D +S L++ ++ K++ + Sbjct: 121 MDEEFTEHDEWIEGYLARVMQHEFDHLDGVLFTDRISPLRKQLVKNKLTAM 171 >gi|327200558|pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) gi|327200559|pdb|3M6O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) gi|327200560|pdb|3M6P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) In Complex With Actinonin gi|327200561|pdb|3M6P|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) In Complex With Actinonin Length = 193 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 89/160 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 3 IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 63 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L A QHE DHL G+LF D ++ D I +++ L Sbjct: 123 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 162 >gi|224539752|ref|ZP_03680291.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus DSM 14838] gi|224518630|gb|EEF87735.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus DSM 14838] Length = 184 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I + LI NM E M +G+GLAA QIG+ R+VV+DL Sbjct: 4 PIYVYGQPVLRKVAEDITPDYPGLKELIANMFETMDHAEGVGLAAPQIGLPIRVVVVDLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ KN +INP I+ S + +EGCLS+P VKR I V YMD N Sbjct: 64 VLSEDYPEYKNFRKAYINPHILEVSGEEISMEEGCLSLPGIHESVKRGNRIHVTYMDENM 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ Sbjct: 124 VEHDEVVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLK 171 >gi|282889627|ref|ZP_06298167.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500454|gb|EFB42733.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 178 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 8/168 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 PL + DPILR+ +E+I+S + L+++M+E + + GIGLAA Q+ L + + Sbjct: 4 PLAFYGDPILRKKCARVEQIDSQLKQLVNDMVETLEAHRGIGLAAPQVHHELNLFITKVP 63 Query: 64 ----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 N VF+NPKI+ +S++ + Y EGCLSIP+ A V+R ITV+Y D + Sbjct: 64 IRYKNGKEDSGNLHVFVNPKILAYSEEKNRYTEGCLSIPNVYAPVERPLSITVQYTDLDG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + GL A C+ HE DH+NG+LFID R+K+ K++ L++ Sbjct: 124 KTCVEDFSGLEARCILHENDHINGVLFID---RIKKGNERKQLDPLLK 168 >gi|104161993|emb|CAJ75702.1| N-formylmethionyl-tRNA deformylase [uncultured Thermotogales bacterium] Length = 166 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV ++ +PILR VS +E + D+ + + + MY DG+GLAA Q+ V R+ V Sbjct: 1 MVGMKVIHIGNPILRNVSESVEVFDDDLRAFVKELSKTMYVEDGVGLAAPQVAVSRRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D V INP+I++ SD+ +EGCLSIP AD+ R + + + Y D Q Sbjct: 61 YDPGDGLR-----VVINPEILSKSDEIVKMEEGCLSIPGIYADIDRPSAVRIHYQDEYGQ 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 H A +QHE DHL G+LF+D+LS KR M+ K++++++ Sbjct: 116 HHEEDLTEYPARIVQHESDHLEGVLFVDYLSASKRAMLKPKLNQIIK 162 >gi|161833710|ref|YP_001597906.1| peptide deformylase [Candidatus Sulcia muelleri GWSS] gi|189083080|sp|A8Z5V9|DEF_SULMW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|152206200|gb|ABS30510.1| peptide deformylase [Candidatus Sulcia muelleri GWSS] Length = 189 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 93/159 (58%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++I+ + LR+ I+K DI LI+NM + MY GIGL+A QIG+ RL +I+ Sbjct: 4 PIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFIIEYN 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +K VFINP II + +EGCLSIP+ ++KR I + Y D N + Sbjct: 64 NFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKKYKQ 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +GLL+ +QHE DH+ G LFID++ LK +I K + Sbjct: 124 HFNGLLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFN 162 >gi|257460312|ref|ZP_05625415.1| peptide deformylase [Campylobacter gracilis RM3268] gi|257442377|gb|EEV17517.1| peptide deformylase [Campylobacter gracilis RM3268] Length = 172 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 98/162 (60%), Gaps = 4/162 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P+ L + S + K ++ + L+D+M E M + +GIGLAA+Q+G R ++I+L + Sbjct: 5 VLTYPNKKLYQRSIEVVKFDAALGELLDDMYETMIAKNGIGLAAIQVGRPVRALIINLAN 64 Query: 66 HAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +K+ + INP+I+ + V+QEGCLS+P + DV R+ FITV++ D Sbjct: 65 EEKIQDKKDLIEIINPQILKKEGEV-VFQEGCLSVPGFYEDVTRAEFITVQFQDRAGNTH 123 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A LLA C+QHE+DHL+G LFI+ + KR K+ K Sbjct: 124 EMDASELLAVCIQHEMDHLDGHLFIERIGYNKRKKFDKEFKK 165 >gi|118581913|ref|YP_903163.1| peptide deformylase [Pelobacter propionicus DSM 2379] gi|118504623|gb|ABL01106.1| peptide deformylase [Pelobacter propionicus DSM 2379] Length = 168 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 102/166 (61%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M P++ +P P+L+++ + I+ +I LI ++L+ M + G +G+AA QIGV R Sbjct: 1 MAIHPILRYPHPLLKKICHEVTGIDREIHALIQDLLDTMRAGPGSVGVAAPQIGVTLRAC 60 Query: 60 VIDLQDHAH-RKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ + + R+N + INP+II S +V +EGC+S+PDY DV+RS + V ++ Sbjct: 61 VVDVSNSRNGRENNHGLLRMINPRIIARSGS-AVMREGCMSVPDYTGDVERSTELRVSFL 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + + I A G A LQHE+DHL+GILF+D + +K + +K Sbjct: 120 EPEGELREITASGFEAVALQHEMDHLDGILFLDRIVSVKTGLFRRK 165 >gi|194368702|pdb|3CPM|A Chain A, Plant Peptide Deformylase Pdf1b Crystal Structure Length = 193 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 89/160 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 19 IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 79 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 138 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L A QHE DHL G+LF D ++ D I +++ L Sbjct: 139 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 178 >gi|281355873|ref|ZP_06242367.1| peptide deformylase [Victivallis vadensis ATCC BAA-548] gi|281318753|gb|EFB02773.1| peptide deformylase [Victivallis vadensis ATCC BAA-548] Length = 197 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 12/169 (7%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+L+ +RP+E + +I L NM E + G+G+AA Q+G RLVV D+ + + Sbjct: 16 DPVLKAKARPVEAVTPEIRELACNMQEALRVFSGVGIAAPQVGESLRLVVFDIPVDSMGE 75 Query: 71 NPMV------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 NP V INP+I+ SD EGCLS+PD A V R A + R + Sbjct: 76 NPTVGEQLLLPRMPLTVINPEIVASSDVLCESDEGCLSVPDIWAPVVRPATVVFRATTLD 135 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GLL C+QHELDHL+G+LF+D +S I + + +L++ Sbjct: 136 GEVIECECGGLLGRCIQHELDHLDGVLFVDRVSPEAARTIERDLKQLIR 184 >gi|163785969|ref|ZP_02180417.1| peptide deformylase [Flavobacteriales bacterium ALC-1] gi|159877829|gb|EDP71885.1| peptide deformylase [Flavobacteriales bacterium ALC-1] Length = 196 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 12/173 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + D +L++ ++ I+K + LI+NM E MY G+GLAA QIG+ RL ++D + Sbjct: 4 PIVAYGDAVLKKKAKDIDKDYPKLNELIENMYETMYGAYGVGLAAPQIGLPIRLFLVDTE 63 Query: 65 DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + FIN +I+ D + EGCLSIPD R DV R I + Sbjct: 64 PFAEDESFSEEEQEQLKNFKKTFINAQILEEEGDEWAFNEGCLSIPDVREDVFRQPKIKI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +Y D N + I DGL+A +QHE DH+ G+LF D LS K+ +I K++ + Sbjct: 124 QYQDENFEIHIEEYDGLIARVIQHEYDHIEGVLFTDKLSSFKKRLIKGKLTNI 176 >gi|221640346|ref|YP_002526608.1| peptide deformylase [Rhodobacter sphaeroides KD131] gi|221161127|gb|ACM02107.1| Peptide deformylase [Rhodobacter sphaeroides KD131] Length = 167 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P V++PD L+ V+ P+E + +I + +M+E M + G GLAA QIGV+ RL V+D Sbjct: 3 RPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVVDC 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + R + NP+I+ S F ++EG ++P A + R +TVR+++ + + Sbjct: 63 SE--SRGKAIRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGETEE 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + AT +QH++DHL+G L+ID LS LKR M+ K K ++ Sbjct: 121 RDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164 >gi|46199964|ref|YP_005631.1| polypeptide deformylase, fms protein-like protein [Thermus thermophilus HB27] gi|55980290|ref|YP_143587.1| peptide deformylase [Thermus thermophilus HB8] gi|1169265|sp|P43522|DEF_THETH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81678630|sp|Q5SLH2|DEF_THET8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81699227|sp|Q72H33|DEF_THET2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|602914|emb|CAA55695.1| N-formylmethionylaminoacyl-tRNA deformylase [Thermus thermophilus] gi|46197591|gb|AAS82004.1| polypeptide deformylase, fms protein-like protein [Thermus thermophilus HB27] gi|55771703|dbj|BAD70144.1| polypeptide deformylase [Thermus thermophilus HB8] Length = 192 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 14/164 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-VVIDL 63 P+ ++ DP+LRR +RP+E S I L ++MLE M+ G+GLAA QIG+ RL V ++ Sbjct: 4 PIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEY 62 Query: 64 QDH--AHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITV 112 D + P+ V NP +IT+ + EGCLS+P Y +V R+ I V Sbjct: 63 ADEPEGEEERPLRELVRRVYVVANP-VITYREGLVEGTEGCLSLPGLYSEEVPRAERIRV 121 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 Y D + +++ +G +A QHE+DHL+GILF + L + KR+ Sbjct: 122 EYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKRE 165 >gi|32266068|ref|NP_860100.1| peptide deformylase [Helicobacter hepaticus ATCC 51449] gi|39930847|sp|Q7VIN5|DEF_HELHP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|32262117|gb|AAP77166.1| N-formylmethionyl-tRNA deformylase [Helicobacter hepaticus ATCC 51449] Length = 181 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 93/146 (63%), Gaps = 5/146 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----Q 64 +P+ +LR+ S P+E + ++ N +D+M E + + G+GLAA+Q+G R+++I++ Sbjct: 16 YPNALLRKKSIPVEIFDDNLHNFLDDMYETLIESKGVGLAAIQVGRAERILIINIPREED 75 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++++ + INP +T ++ ++EGCLS+PD+ +KR +++ Y D +I+ Sbjct: 76 KQQYKEDLLEIINPTFLT-QEECVEWEEGCLSVPDFYESIKRFDKVSIAYKDRYGNDRIL 134 Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150 A G LA +QHE+DHLNG+LF+D L Sbjct: 135 KAQGFLAVAIQHEIDHLNGVLFVDKL 160 >gi|257469368|ref|ZP_05633462.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185] gi|317063614|ref|ZP_07928099.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185] gi|313689290|gb|EFS26125.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185] Length = 173 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--QDH 66 + DP+LR + +E ++ +I ++ +M E MY G+GLAA QIG+ R++V+D + Sbjct: 8 YGDPVLREKTVEVETVDDNIREILQDMAETMYDKKGVGLAAPQIGISKRMLVLDWSGEGE 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 A RK +NP I +++ ++EGCLSIP V+R A I V Y++ + Sbjct: 68 ALRK----VVNPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIRVDYLNEKGEKVTEEL 123 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +G A +QHE DHL +LF+D +S + + M+TKK+ L Sbjct: 124 EGFPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQAL 162 >gi|1072950|pir||A55228 fms protein homolog - Thermus aquaticus (fragment) Length = 191 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 14/164 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-VVIDL 63 P+ ++ DP+LRR +RP+E S I L ++MLE M+ G+GLAA QIG+ RL V ++ Sbjct: 3 PIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEY 61 Query: 64 QDH--AHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITV 112 D + P+ V NP +IT+ + EGCLS+P Y +V R+ I V Sbjct: 62 ADEPEGEEERPLRELVRRVYVVANP-VITYREGLVEGTEGCLSLPGLYSEEVPRAERIRV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 Y D + +++ +G +A QHE+DHL+GILF + L + KR+ Sbjct: 121 EYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKRE 164 >gi|57237196|ref|YP_178208.1| peptide deformylase [Campylobacter jejuni RM1221] gi|86149710|ref|ZP_01067940.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153727|ref|ZP_01071930.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597153|ref|ZP_01100388.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25] gi|148926356|ref|ZP_01810040.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486] gi|153951420|ref|YP_001397439.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97] gi|157414500|ref|YP_001481756.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81116] gi|205356562|ref|ZP_03223325.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421] gi|218561870|ref|YP_002343649.1| peptide deformylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|17432957|sp|Q9PIT8|DEF_CAMJE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|57166000|gb|AAW34779.1| peptide deformylase [Campylobacter jejuni RM1221] gi|85839978|gb|EAQ57237.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6] gi|85842688|gb|EAQ59900.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190214|gb|EAQ94188.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25] gi|112359576|emb|CAL34360.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844748|gb|EDK21853.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486] gi|152938866|gb|ABS43607.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97] gi|157385464|gb|ABV51779.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni 81116] gi|205345567|gb|EDZ32207.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421] gi|284925483|gb|ADC27835.1| peptide deformylase [Campylobacter jejuni subsp. jejuni IA3902] gi|307747142|gb|ADN90412.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni M1] gi|315057628|gb|ADT71957.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni S3] gi|315928123|gb|EFV07441.1| peptide deformylase [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930199|gb|EFV09314.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 305] Length = 175 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 99/158 (62%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV+K ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R+++ Sbjct: 1 MVRK-IITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLL 59 Query: 61 I---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + D D +++ + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 60 VNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 120 FGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157 >gi|114566758|ref|YP_753912.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318216|sp|Q0AXL3|DEF_SYNWW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114337693|gb|ABI68541.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 152 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 58/143 (40%), Positives = 90/143 (62%), Gaps = 6/143 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ P+ ILR + P+++IN+ ++ ++DNM + MY+ DG+GLAA QIG+ R++V+D+ + Sbjct: 6 VITVPNDILRGKALPVKEINAGVLRVLDNMRDTMYAADGVGLAAPQIGIPKRMIVVDIGE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 N + INP+I+ + + EGCLS+P V R+ + V+ +D N Q Sbjct: 66 -----NLLELINPEILK-QEGNQLGSEGCLSVPGIVGRVNRAKKVLVKGLDRNGQELNFA 119 Query: 126 ADGLLATCLQHELDHLNGILFID 148 A LLA LQHE+DHL GILFID Sbjct: 120 AVDLLAKVLQHEIDHLEGILFID 142 >gi|308069676|ref|YP_003871281.1| peptide deformylase (PDF) [Paenibacillus polymyxa E681] gi|305858955|gb|ADM70743.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681] Length = 165 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 56/143 (39%), Positives = 88/143 (61%), Gaps = 4/143 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V+ PD +L +V++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+V+D D Sbjct: 6 IVLEPDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIVVDAGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + INP+I+ + + CLSIP DV+R+ +TV+ +D + + Sbjct: 66 E---HGLIKMINPEIVAEEGEELGPEG-CLSIPGLNGDVRRAEKVTVKGLDREGKAITVT 121 Query: 126 ADGLLATCLQHELDHLNGILFID 148 A GLL+ QHE+DHLNGILF D Sbjct: 122 ATGLLSRAFQHEIDHLNGILFTD 144 >gi|313901452|ref|ZP_07834909.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM 13965] gi|313468280|gb|EFR63737.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM 13965] Length = 540 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 54/143 (37%), Positives = 87/143 (60%), Gaps = 5/143 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 +P+LR ++P+ ++ +I L+D M MY+ DGIGLAA Q+GV R++V+D+ D Sbjct: 32 EPVLRTPAQPVARVTREIRQLLDRMAATMYAADGIGLAAPQVGVSKRVIVVDVGD----- 86 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ ++ EGCLS+P A+V+R + V +D + I +G+L Sbjct: 87 GLIELINPEIVRRGEEVEAAYEGCLSLPRLLAEVERPTSVQVTGLDRRGRRIWIEGEGVL 146 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A CLQHE+DHL+G+L D ++ Sbjct: 147 ARCLQHEIDHLDGVLITDRARKV 169 >gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana] Length = 273 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 89/160 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 83 IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L A QHE DHL G+LF D ++ D I +++ L Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 242 >gi|15241461|ref|NP_196970.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase [Arabidopsis thaliana] gi|30684999|ref|NP_850821.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase [Arabidopsis thaliana] gi|39932734|sp|Q9FUZ2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=AtDEF2; Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana] gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana] gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana] gi|332004676|gb|AED92059.1| peptide deformylase 1B [Arabidopsis thaliana] gi|332004677|gb|AED92060.1| peptide deformylase 1B [Arabidopsis thaliana] Length = 273 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 89/160 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 83 IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L A QHE DHL G+LF D ++ D I +++ L Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 242 >gi|147678126|ref|YP_001212341.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum SI] gi|189083075|sp|A5D1C0|DEF_PELTS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146274223|dbj|BAF59972.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum SI] Length = 155 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 89/150 (59%), Gaps = 6/150 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V D IL+ ++ + KIN +I+ L+DNM E MY G+GLAA QIGV R++V+D+ + Sbjct: 6 IVELGDRILKERAKEVPKINQNIIKLLDNMAETMYHARGVGLAAPQIGVSKRVIVVDVGE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + INP +IT EGCLSIP DV R++ I V+ +D + + Sbjct: 66 -----GLLEMINP-VITSCAGHETDSEGCLSIPGIVGDVTRASVIEVKGLDRRGKPLEVK 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G LA LQHE+DHL+GILFI+ +++ Sbjct: 120 AKGYLARALQHEIDHLDGILFIEKAKNIRK 149 >gi|297621379|ref|YP_003709516.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044] gi|297376680|gb|ADI38510.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044] Length = 174 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 L + DP LR+ +P+E+IN++I L++NM+E + +GIGLAA QI RL + + Sbjct: 5 LAYYGDPFLRKKCKPVEEINNEIRELVENMVETLVEYNGIGLAAPQIKQDLRLFITAVPK 64 Query: 66 H-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +VFINP+I+++S++ QEGCLSIP +V R I ++ D Sbjct: 65 ELPNGDWEQGELIVFINPEIVSYSEETEDRQEGCLSIPKLYGNVNRPVRIVIKATDMEGN 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +GL A C HE DH+NG+L+ID + +R ++ K+ ++ Sbjct: 125 VFERKFEGLQARCCLHENDHINGVLYIDRIRGKERKLLEPKLREI 169 >gi|121612384|ref|YP_999910.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176] gi|167004870|ref|ZP_02270628.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176] gi|87250043|gb|EAQ73001.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176] Length = 175 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 100/158 (63%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV+K ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R+++ Sbjct: 1 MVRK-IITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLL 59 Query: 61 IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ D +++ + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 60 VNIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 120 FGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157 >gi|40889670|pdb|1RL4|A Chain A, Plasmodium Falciparum Peptide Deformylase Complex With Inhibitor gi|40889671|pdb|1RL4|B Chain B, Plasmodium Falciparum Peptide Deformylase Complex With Inhibitor Length = 188 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V +PDPILRR S + + ++ ++ M ++MY + GIGL+A Q+ + R++V + L Sbjct: 11 IVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALY 70 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +N +FINP I+ S EGCLS P V+R + +++ Y D N + Sbjct: 71 EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 130 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID ++++ + + K+++L++ Sbjct: 131 ILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 173 >gi|332876937|ref|ZP_08444690.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685045|gb|EGJ57889.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 192 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 91/173 (52%), Gaps = 12/173 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ + DP+LR+V+ I ++ LI NM + M G+GLAA QIG+ RL V+D Sbjct: 4 PIIAYGDPVLRKVATDISPDYPNLNTLIANMYDTMNYAYGVGLAAPQIGLPIRLFVVDTA 63 Query: 65 DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + FIN KI + D ++ EGCLSIP R DV R IT+ Sbjct: 64 PFADDDDLTEEERTFLSNFKKTFINAKITEETGDKWLFNEGCLSIPGVREDVSRQKQITI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++D Q + GL A +QHE DH+ GILF D LS K+ +I K++ + Sbjct: 124 EFVDEQFTPQRLTLTGLAARVVQHEYDHIEGILFTDKLSSFKKQLIKGKLTNI 176 >gi|296133300|ref|YP_003640547.1| peptide deformylase [Thermincola sp. JR] gi|296031878|gb|ADG82646.1| peptide deformylase [Thermincola potens JR] Length = 150 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 86/148 (58%), Gaps = 6/148 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V DPIL+ RP+ KI +I+ L+D+M + MY +G+GLAA QIGV R++V+D+ D Sbjct: 6 IVEIGDPILKEKCRPVNKITPNIIKLLDDMADTMYDANGVGLAAPQIGVGKRVIVVDVGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +NP+I+ + EGCLSIP + V R A + VR M+ Sbjct: 66 GL-----IELVNPEIV-HREGSETDVEGCLSIPGIQGQVPRYAKVRVRGMNREGNRVEYE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153 A+GLLA QHE+DHL GILFID + Sbjct: 120 AEGLLARAFQHEIDHLEGILFIDRAKEI 147 >gi|163815237|ref|ZP_02206614.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759] gi|158449432|gb|EDP26427.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759] Length = 155 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 58/138 (42%), Positives = 84/138 (60%), Gaps = 5/138 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+ RP+ K++ + LID+M + MY +G+GLAA Q+G+L R+VVID+ D Sbjct: 11 DDILRKTCRPVTKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVVIDVCD----D 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 NP+ INP+II +D +EGCLS+P V R + + D N + + +GLL Sbjct: 67 NPLCLINPEIIE-ADGEQTGEEGCLSLPGKFGTVTRPMHVVCKAYDENMEEFTVEGEGLL 125 Query: 131 ATCLQHELDHLNGILFID 148 A + HELDHL+G L+ D Sbjct: 126 ARAICHELDHLDGKLYKD 143 >gi|77464453|ref|YP_353957.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1] gi|77388871|gb|ABA80056.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1] Length = 163 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + P E + L +ML MY +G GLAA Q+G + RL V Sbjct: 1 MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGRMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ ++ EGCLSIP R V R+ I +R+ Sbjct: 60 MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q + G+ A C QHE+DHL+GI+ +D LS RD ++M Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162 >gi|312134885|ref|YP_004002223.1| peptide deformylase [Caldicellulosiruptor owensensis OL] gi|311774936|gb|ADQ04423.1| peptide deformylase [Caldicellulosiruptor owensensis OL] Length = 166 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I+ D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRIYEDEILRKKSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+ I +S+ V EGCLS+P+ +V+R + V D Sbjct: 61 IDIGEGA-----IELVNPQ-IEYSEGSVVDVEGCLSVPNMWGEVERPQKVVVNAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164 + A+GLLA L HE+DHL+GILF+D + R + + I ++ S+ Sbjct: 115 EFRLEAEGLLARALCHEIDHLDGILFVDKVIRFVSEEEIEQRRSR 159 >gi|268680776|ref|YP_003305207.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] gi|268618807|gb|ACZ13172.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] Length = 171 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 6/154 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++++P+ ILR SR + ++ + L+D+M E M + +GIGLAA+QIGV ++I+L Sbjct: 3 REILVYPNKILRETSRDVIHFDATLHELLDDMYETMITKEGIGLAAIQIGVAQNALIINL 62 Query: 64 QDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD-CNA 119 D ++N INP +I D +VYQEGCLS+P Y +V R+ I +R+ D Sbjct: 63 VDETGLQKKENLYEIINP-VILEKDGSTVYQEGCLSVPGYYDEVTRAEHIKLRFYDRMGV 121 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 H+ + D L+A +QHE+DHL G LFI+ LS L Sbjct: 122 MHEEEFRD-LMAIAVQHEMDHLKGHLFIEKLSYL 154 >gi|163733889|ref|ZP_02141331.1| peptide deformylase, putative [Roseobacter litoralis Och 149] gi|161393000|gb|EDQ17327.1| peptide deformylase, putative [Roseobacter litoralis Och 149] Length = 165 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 95/157 (60%), Gaps = 2/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR + + +I D++ + D+M++ M + G+GLAA QIGV+ RL V+D D Sbjct: 9 WPDARLRTAAADVPEITPDVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAVVDASDSRD 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ + NP+II S + ++E ++P A V+R +TVR+MD + G Sbjct: 69 RR--IRLANPEIIEASAIMNDHEEASPNLPGVFAKVRRPRGVTVRFMDETGTYVRRDFVG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L AT +QH++DHL G ++ D+LS++KRDM+ +K KL Sbjct: 127 LEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163 >gi|126662042|ref|ZP_01733041.1| peptide deformylase [Flavobacteria bacterium BAL38] gi|126625421|gb|EAZ96110.1| peptide deformylase [Flavobacteria bacterium BAL38] Length = 195 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + +P+LR+V I ++ I NM E MY G+GLAA Q+G+ RL ++D + Sbjct: 4 PIYGYGEPVLRKVGEDISPEYPNLKETIVNMYETMYHAHGVGLAAPQVGLPIRLFIVDTE 63 Query: 65 -----DHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 D ++ + FIN KII D + EGCLSIPD R DV R IT+ Sbjct: 64 PFSDSDDVSKEEAALMKDFKKTFINAKIIKEEGDVWGFNEGCLSIPDVREDVFRHDTITI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y D + + DGL+A +QHE DH+ GILF DH+S Sbjct: 124 EYFDEDFNKKTEVYDGLIARVIQHEYDHIEGILFTDHIS 162 >gi|125973086|ref|YP_001036996.1| peptide deformylase [Clostridium thermocellum ATCC 27405] gi|256004589|ref|ZP_05429567.1| peptide deformylase [Clostridium thermocellum DSM 2360] gi|281417281|ref|ZP_06248301.1| peptide deformylase [Clostridium thermocellum JW20] gi|158513246|sp|A3DCX4|DEF_CLOTH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|125713311|gb|ABN51803.1| peptide deformylase [Clostridium thermocellum ATCC 27405] gi|255991461|gb|EEU01565.1| peptide deformylase [Clostridium thermocellum DSM 2360] gi|281408683|gb|EFB38941.1| peptide deformylase [Clostridium thermocellum JW20] gi|316940693|gb|ADU74727.1| peptide deformylase [Clostridium thermocellum DSM 1313] Length = 170 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+VS+ ++ I+ I L+D+M E MY+ +G+GLAA Q+GVL R+VVID+ D Sbjct: 11 DEILRKVSKKVDVIDERIKTLLDDMAETMYAANGVGLAAPQVGVLKRVVVIDVGD----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 M INP+I+ + + EGCLSIP +VKR A + V ++ + + LL Sbjct: 66 GLMELINPEIVE-QEGEQIDIEGCLSIPGVAGEVKRPARVVVEALNREGEKITVEGKELL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A L HE+DHL+GILF D + R Sbjct: 125 AVALCHEIDHLDGILFTDKVIRF 147 >gi|302671348|ref|YP_003831308.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316] gi|302395821|gb|ADL34726.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316] Length = 163 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 88/141 (62%), Gaps = 5/141 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L + + +++I I L+++MLE MY +G+GLAA Q+G+L R+ VID+ + Sbjct: 11 DDVLVKNCKEVKEITPRIKELVEDMLETMYEANGVGLAAPQVGILKRIFVIDVTG----E 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +PMVFINP+I+ S + + Y EGCLS+P V R+ ++ + D + II + LL Sbjct: 67 DPMVFINPEILETSGEQTGY-EGCLSVPGKSGIVTRANYVKAKATDLDGNEFIIEGEELL 125 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A +QHE DHLNG +++D + Sbjct: 126 ARAIQHENDHLNGKMYVDKVE 146 >gi|226312666|ref|YP_002772560.1| peptide deformylase [Brevibacillus brevis NBRC 100599] gi|226095614|dbj|BAH44056.1| peptide deformylase [Brevibacillus brevis NBRC 100599] Length = 175 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M ++ +V DPILR S+ ++ I + ++D+M++ +Y+ G GL+A+QIG+ RLV Sbjct: 1 MAERMIVRLGDPILRETSKRVQSITPQVEKILDDMVQTIYAAKGRAGLSAIQIGIPKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + INP ++ S + V QE CLSIP V+R+ ++ V+ ++ Sbjct: 61 VMDCGS-----GLIELINPVLMEKSGE-QVGQEACLSIPGVFGIVRRANYVKVQTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + I A+ LA C+QHE+DHL GILFIDH L KK+++ Sbjct: 115 ETKTIEAEDFLARCIQHEMDHLEGILFIDHTEELYSAKTGKKLNR 159 >gi|283955632|ref|ZP_06373125.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336] gi|283792857|gb|EFC31633.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336] Length = 175 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 98/158 (62%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV+K ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R ++ Sbjct: 1 MVRK-IITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRALL 59 Query: 61 I---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + D D +++ + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 60 VNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 120 FGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157 >gi|260574966|ref|ZP_05842968.1| peptide deformylase [Rhodobacter sp. SW2] gi|259022971|gb|EEW26265.1| peptide deformylase [Rhodobacter sp. SW2] Length = 167 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 6/158 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD L+ V+ P+ +I ++ + +M+E M G+GLAA QIGV+ RL V+D + Sbjct: 9 YPDRRLKTVAEPVAEITDEVRAIWADMVETMDDMPGVGLAAPQIGVMLRLAVVDCSE--T 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127 R ++ NP+++ S + EG ++P A + R +TVR++ NAQ Q+ D Sbjct: 67 RGQAVLMANPEVLHASGQMREHDEGSPNLPGVSAVISRPRAVTVRFL--NAQGQVEERDF 124 Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L AT +QH++DHLNG L+IDHLS LKR M+ K K Sbjct: 125 VNLWATSVQHQIDHLNGKLYIDHLSPLKRKMLIAKSQK 162 >gi|19704492|ref|NP_604054.1| polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|23396540|sp|Q8REF0|DEF_FUSNN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|19714766|gb|AAL95353.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 174 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 98/159 (61%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ V D + Sbjct: 8 YGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIFVCDDGNG 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 RK INP I+ +++ ++EGCLS+P V+R + ++Y++ + A Sbjct: 68 VLRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYGKEVEEIA 123 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + LA +QHE DHL+GILFI+ +S + + +I KK++ + Sbjct: 124 ENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANI 162 >gi|108762860|ref|YP_635455.1| peptide deformylase [Myxococcus xanthus DK 1622] gi|108466740|gb|ABF91925.1| peptide deformylase [Myxococcus xanthus DK 1622] Length = 168 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +VI+P +L ++P+ + L++ M E M +GIG+AA Q+G R+ ++ +D Sbjct: 5 IVIWPHKVLTSSTKPVTDFGPPLETLLEQMAESMKEAEGIGIAANQVGESLRVALVGRED 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +NP+I+ + ++ +EGCLS+P R + VRY D +A+ + Sbjct: 65 GTF----FEIVNPQILEKKEPVTM-EEGCLSVPREWEKCPRFHKVKVRYQDKSAEWHELE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+G LA LQHE+DHL+G +F+DHLS LKR +I +M KL +++ Sbjct: 120 AEGRLAHVLQHEIDHLDGHVFVDHLSSLKRTLILDRMKKLQKVK 163 >gi|296328150|ref|ZP_06870681.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154662|gb|EFG95448.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 174 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 98/159 (61%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ V D + Sbjct: 8 YGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIFVCDDGNG 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 RK INP I+ +++ ++EGCLS+P V+R + ++Y++ + A Sbjct: 68 VLRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYGKEVEEIA 123 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + LA +QHE DHL+GILFI+ +S + + +I KK++ + Sbjct: 124 ENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANI 162 >gi|221640345|ref|YP_002526607.1| peptide deformylase [Rhodobacter sphaeroides KD131] gi|221161126|gb|ACM02106.1| Peptide deformylase [Rhodobacter sphaeroides KD131] Length = 163 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + P E + L +ML MY +G GLAA Q+G + RL V Sbjct: 1 MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ ++ EGCLSIP R V R+ I +R+ Sbjct: 60 MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q + G+ A C QHE+DHL+GI+ +D LS RD ++M Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162 >gi|254451672|ref|ZP_05065109.1| peptide deformylase [Octadecabacter antarcticus 238] gi|198266078|gb|EDY90348.1| peptide deformylase [Octadecabacter antarcticus 238] Length = 165 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +P LR + + +I DI L D M+ M + G+GLAA Q+GV RL V Sbjct: 1 MPHRPFIPWPAKALRTPAVEVTEITDDIRALWDEMINAMDAMPGVGLAAPQLGVSLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R + + NP I+ S + +++E ++P A ++R +TVR+M+ Sbjct: 61 VDASDK--RGSAIRMANPTILHASHELRLHEEASPNLPGLSASLERPRAVTVRFMNDAGM 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL+G ++ D LSR KRDM+ KK KL Sbjct: 119 YDRRDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163 >gi|282856366|ref|ZP_06265645.1| peptide deformylase [Pyramidobacter piscolens W5455] gi|282585737|gb|EFB91026.1| peptide deformylase [Pyramidobacter piscolens W5455] Length = 159 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 6/159 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V FPDP+LRR +RP+ + + +D M VM DG+G+AA Q+GV ++ V+ + Sbjct: 5 IVEFPDPVLRRATRPVTVFDEALKTFVDEMTIVMKDDDGVGIAAPQVGVSKKVAVVCFEG 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + V +NP +I + +EGCLS P +V+R+ + V D + Sbjct: 65 ERY-----VLVNP-VIVEATGTQRGEEGCLSFPGIFGEVERAERVVVECQDETGAKRRHE 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+G +A QHE++HL G L IDH S +KR++I K++ K Sbjct: 119 AEGFVARAFQHEIEHLEGKLLIDHFSPMKRELIRKRLMK 157 >gi|148655206|ref|YP_001275411.1| peptide deformylase [Roseiflexus sp. RS-1] gi|254767600|sp|A5US58|DEF_ROSS1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148567316|gb|ABQ89461.1| peptide deformylase [Roseiflexus sp. RS-1] Length = 185 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 90/162 (55%), Gaps = 18/162 (11%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-------- 64 IL P+ N + L+ +M E M++ G+GLAA QIG+ RL VI + Sbjct: 17 ILTTRCHPVRLPNPALKQLVADMFETMHAASGVGLAAPQIGITQRLAVISIPPVVEERPD 76 Query: 65 ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + A +N V INP+II SD V EGCLS+P + +V R+A++TV Y D N + Sbjct: 77 GSKVEVAPEQN-FVLINPEIIKASDQEDVGLEGCLSLPGWYGEVPRAAWVTVEYTDLNGR 135 Query: 121 HQ-IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 Q I A GLL LQHE+DHL+GILF + + RD+ T K Sbjct: 136 RQRIRRATGLLGRALQHEIDHLDGILFTERI----RDLSTLK 173 >gi|312793226|ref|YP_004026149.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876962|ref|ZP_07736937.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A] gi|311796277|gb|EFR12631.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A] gi|312180366|gb|ADQ40536.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 166 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+ I S+ +V EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGA-----IELVNPE-IEHSEGSAVDVEGCLSVPNVWGEVERPQKVIVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164 + A+GLLA + HE+DHL+GILF+D + R + + I ++ SK Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSK 159 >gi|167040394|ref|YP_001663379.1| peptide deformylase [Thermoanaerobacter sp. X514] gi|300914478|ref|ZP_07131794.1| peptide deformylase [Thermoanaerobacter sp. X561] gi|307724286|ref|YP_003904037.1| peptide deformylase [Thermoanaerobacter sp. X513] gi|238687587|sp|B0K292|DEF_THEPX RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166854634|gb|ABY93043.1| peptide deformylase [Thermoanaerobacter sp. X514] gi|300889413|gb|EFK84559.1| peptide deformylase [Thermoanaerobacter sp. X561] gi|307581347|gb|ADN54746.1| peptide deformylase [Thermoanaerobacter sp. X513] Length = 166 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/143 (44%), Positives = 92/143 (64%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++P+ +INS I+ ++++M + MY DG+GLAA QIGVL RLVVID+ + Sbjct: 11 DEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVVIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ + + V EGCLSIP +VKR + V+Y+D + + I + LL Sbjct: 66 GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGKEREIEGEDLL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A L HE+DHLNG+LFID R Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147 >gi|254477587|ref|ZP_05090973.1| peptide deformylase [Ruegeria sp. R11] gi|214031830|gb|EEB72665.1| peptide deformylase [Ruegeria sp. R11] Length = 165 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 6/160 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR + + +I D+ L +M++ M + G+GLAA QIGVL RL V+D + Sbjct: 9 WPDKHLRSRAVEVSEITDDVRALWQDMIDTMEAMPGVGLAANQIGVLQRLAVVD--GSSE 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127 R + NP+I+ S + E ++P A +KR +TVRYMD N + + D Sbjct: 67 RGRAVRMANPEILHASVALREHDEASPNLPGVSAKIKRPRAVTVRYMDENGE--TVERDF 124 Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K KL Sbjct: 125 VGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLLRKAKKLT 164 >gi|124506707|ref|XP_001351951.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7] gi|23504979|emb|CAD51762.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7] Length = 241 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V +PDPILRR S + + ++ ++ M ++MY + GIGL+A Q+ + R++V + L Sbjct: 67 IVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALY 126 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +N +FINP I+ S EGCLS P V+R + +++ Y D N + Sbjct: 127 EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 186 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID ++++ + + K+++L++ Sbjct: 187 ILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 229 >gi|254302996|ref|ZP_04970354.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323188|gb|EDK88438.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 174 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 98/159 (61%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ V D + Sbjct: 8 YGEDVLKQIAKEVEINEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIFVCDDGNG 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 RK INP I+ +++ ++EGCLS+P V+R + ++Y++ + A Sbjct: 68 VVRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYGEEIEEIA 123 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + LA +QHE DHL+GILF++ +S + + +I KK++ + Sbjct: 124 ENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANM 162 >gi|293977820|ref|YP_003543250.1| peptide deformylase [Candidatus Sulcia muelleri DMIN] gi|292667751|gb|ADE35386.1| peptide deformylase [Candidatus Sulcia muelleri DMIN] Length = 189 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 92/159 (57%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++I+ + LR+ I+K DI LI+NM + MY GIGL+A QIG+ RL +I+ Sbjct: 4 PIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFIIEYN 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +K VFINP II + +EGCLSIP+ ++KR I + Y D N + Sbjct: 64 NFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKKYKQ 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +G L+ +QHE DH+ G LFID++ LK +I K + Sbjct: 124 HFNGFLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFN 162 >gi|78188466|ref|YP_378804.1| peptide deformylase [Chlorobium chlorochromatii CaD3] gi|78170665|gb|ABB27761.1| peptide deformylase [Chlorobium chlorochromatii CaD3] Length = 199 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 102/165 (61%), Gaps = 5/165 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P+ I+ +LR+ ++P++ ++ +I LI M E M++ GIGLAA Q+G RL+V+D Sbjct: 15 PITIYSHEVLRQKAKPLKGVDKEIETLIAAMFESMHNASGIGLAAPQVGRSLRLLVLDVS 74 Query: 63 -LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 L+++ K PMV INP I++ ++ +EGCLS+P + DV R + IT++Y + + Sbjct: 75 CLKNYKDEK-PMVVINPHILSVRGACAM-EEGCLSVPGVQGDVVRPSAITMKYRNERFEE 132 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 G++A LQHE+DHL+G LF+D + + + I ++++L Sbjct: 133 LTAEFSGMVARVLQHEIDHLDGKLFVDRMDKRDKRKIQHELNELT 177 >gi|255019795|ref|ZP_05291871.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] gi|254970724|gb|EET28210.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] Length = 171 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 98/162 (60%), Gaps = 8/162 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVID- 62 P++ +PDP L R + P+E+ + ++ + + ++ E MY+ G+G+AA Q+ L R+V++D Sbjct: 5 PILTYPDPRLHRKAEPVEQFDEELRSFVADLTETMYAGPGGVGIAAPQVDRLQRIVLVDV 64 Query: 63 ---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 L D H + INP++I + + +V +EGC+S+PD+ +V R+ I V+ D + Sbjct: 65 RPKLGDDCH--GFLCLINPELIAW-EGMAVGREGCMSVPDFTGNVIRAERIQVQAQDLDG 121 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + +I G A +QHE+DHL+G LF+D L K D+ +K Sbjct: 122 RSRIFECAGFEARAVQHEMDHLDGFLFLDRLVSRKTDLFRRK 163 >gi|269836415|ref|YP_003318643.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745] gi|269785678|gb|ACZ37821.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745] Length = 177 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 5/150 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-Q 64 LV DP LR+ + I K++ D+ L +MLE MY+ DG+GLA Q+GV+ R++VI + Sbjct: 6 LVYEGDPRLRQKAVRIRKVDDDLRRLAADMLETMYAADGVGLAGPQVGVMRRIIVIGVPA 65 Query: 65 DHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +P M INP+I+ S V EGCLSIP++ +V R+ +TV+ D + + Sbjct: 66 GFENEDDPPIEMALINPEIVRASG-RQVGPEGCLSIPNWYGEVPRAMHVTVKARDLDDRE 124 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 I A G LA LQHE+DHL+GILF D + Sbjct: 125 IRIKASGGLARILQHEIDHLDGILFTDRVE 154 >gi|326335909|ref|ZP_08202086.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691873|gb|EGD33835.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 198 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 14/174 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P++ + DP+LR+V PI ++ LI++M + MY + G+GLAA Q+G+ RL V+D Sbjct: 4 PIIAYGDPVLRKVCEPITADYPELSKLIEDMFQTMYKSHGVGLAAPQVGLPIRLFVVDTI 63 Query: 64 ----------QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ + KN FIN KII+ ++ EGCLSIP DV R I + Sbjct: 64 GFSENEDLTREEKEYLKNFKRPFINAKIISEEGTPWMFNEGCLSIPGINEDVSRKPTIEI 123 Query: 113 RYMDCNAQ-HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Y D H+ ++ GL+A +QHE DH G LF D+LS K+ ++ K++ + Sbjct: 124 EYQDEQFNIHRETFS-GLVARVIQHEYDHTEGKLFTDYLSSFKKQLLKNKLNNI 176 >gi|217967822|ref|YP_002353328.1| peptide deformylase [Dictyoglomus turgidum DSM 6724] gi|254767580|sp|B8E0X7|DEF_DICTD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|217336921|gb|ACK42714.1| peptide deformylase [Dictyoglomus turgidum DSM 6724] Length = 153 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 86/139 (61%), Gaps = 6/139 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPIL+ ++ +EKI+ + NL+ +M+E M ++G+GLAA Q+G R++V+D ++ Sbjct: 10 DPILKIKAKKVEKIDEKVKNLVRDMIETMKFSNGVGLAAPQVGESLRIIVVDYEE----- 64 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 NP+ FINP+I+ + Y EGCLS+P +KR+ I + D + + A GLL Sbjct: 65 NPIAFINPEILEMDGEVLDY-EGCLSVPGVEVPIKRAERIIFKAQDLQGRTKRYKAKGLL 123 Query: 131 ATCLQHELDHLNGILFIDH 149 A +QHE+DHL GIL +D Sbjct: 124 ARVIQHEVDHLEGILILDR 142 >gi|313681059|ref|YP_004058798.1| peptide deformylase [Oceanithermus profundus DSM 14977] gi|313153774|gb|ADR37625.1| peptide deformylase [Oceanithermus profundus DSM 14977] Length = 199 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 101/181 (55%), Gaps = 18/181 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ DP+LR+ +RP++ SD+ L +NM+E M+ G+GLAA Q+G+ RL V Sbjct: 6 PIRLYGDPVLRKKARPVQDF-SDLEELAENMVETMFEYGGVGLAAPQVGLSRRLFVAAEY 64 Query: 64 -------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAF 109 + + +N V +NP+I T + V EGCLSIP Y DV R Sbjct: 65 ALEEEEAEADEEERPKSALRNLYVMVNPRI-THREGTQVGTEGCLSIPGVYSDDVPRDLQ 123 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168 I V Y D + + A+G LA +QHELDHL G+LF+D + + L+R + + ++L ++ Sbjct: 124 IRVEYQDVTGAPRTLEAEGYLARVIQHELDHLEGVLFLDRIPAELRRAFLEEHRAELAEM 183 Query: 169 R 169 + Sbjct: 184 Q 184 >gi|23500203|ref|NP_699643.1| peptide deformylase [Brucella suis 1330] gi|83269660|ref|YP_418951.1| peptide deformylase [Brucella melitensis biovar Abortus 2308] gi|161511169|ref|NP_541790.2| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|161620522|ref|YP_001594408.1| peptide deformylase [Brucella canis ATCC 23365] gi|163844620|ref|YP_001622275.1| peptide deformylase [Brucella suis ATCC 23445] gi|189022926|ref|YP_001932667.1| peptide deformylase [Brucella abortus S19] gi|225686258|ref|YP_002734230.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|254691174|ref|ZP_05154428.1| peptide deformylase [Brucella abortus bv. 6 str. 870] gi|254698957|ref|ZP_05160785.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|254699710|ref|ZP_05161538.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|254702846|ref|ZP_05164674.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|254706033|ref|ZP_05167861.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|254711667|ref|ZP_05173478.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|254732404|ref|ZP_05190982.1| peptide deformylase [Brucella abortus bv. 4 str. 292] gi|256015237|ref|YP_003105246.1| peptide deformylase [Brucella microti CCM 4915] gi|256029699|ref|ZP_05443313.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|256043351|ref|ZP_05446286.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|256059334|ref|ZP_05449536.1| peptide deformylase [Brucella neotomae 5K33] gi|256111642|ref|ZP_05452632.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|256157852|ref|ZP_05455770.1| peptide deformylase [Brucella ceti M490/95/1] gi|256253186|ref|ZP_05458722.1| peptide deformylase [Brucella ceti B1/94] gi|256256360|ref|ZP_05461896.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|256262606|ref|ZP_05465138.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str. 63/9] gi|260544911|ref|ZP_05820732.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260564557|ref|ZP_05835042.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260568243|ref|ZP_05838712.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260756775|ref|ZP_05869123.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str. 870] gi|260760206|ref|ZP_05872554.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str. 292] gi|260763444|ref|ZP_05875776.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882591|ref|ZP_05894205.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68] gi|261220293|ref|ZP_05934574.1| peptide deformylase-like protein [Brucella ceti B1/94] gi|261313474|ref|ZP_05952671.1| peptide deformylase-like protein [Brucella pinnipedialis M163/99/10] gi|261319290|ref|ZP_05958487.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94] gi|261323293|ref|ZP_05962490.1| peptide deformylase-like protein [Brucella neotomae 5K33] gi|261750174|ref|ZP_05993883.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513] gi|261753446|ref|ZP_05997155.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686] gi|265986710|ref|ZP_06099267.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1] gi|265989773|ref|ZP_06102330.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993119|ref|ZP_06105676.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str. Ether] gi|265996360|ref|ZP_06108917.1| peptide deformylase-like protein [Brucella ceti M490/95/1] gi|54036957|sp|P63920|DEFL_BRUSU RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|54040933|sp|P63919|DEFL_BRUME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|23463805|gb|AAN33648.1| polypeptide deformylase [Brucella suis 1330] gi|82939934|emb|CAJ12948.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus 2308] gi|161337333|gb|ABX63637.1| peptide deformylase [Brucella canis ATCC 23365] gi|163675343|gb|ABY39453.1| peptide deformylase [Brucella suis ATCC 23445] gi|189021500|gb|ACD74221.1| Formylmethionine deformylase [Brucella abortus S19] gi|225642363|gb|ACO02276.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|255997897|gb|ACU49584.1| peptide deformylase [Brucella microti CCM 4915] gi|260098182|gb|EEW82056.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260152200|gb|EEW87293.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260154908|gb|EEW89989.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260670524|gb|EEX57464.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str. 292] gi|260673865|gb|EEX60686.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676883|gb|EEX63704.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str. 870] gi|260872119|gb|EEX79188.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68] gi|260918877|gb|EEX85530.1| peptide deformylase-like protein [Brucella ceti B1/94] gi|261298513|gb|EEY02010.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94] gi|261299273|gb|EEY02770.1| peptide deformylase-like protein [Brucella neotomae 5K33] gi|261302500|gb|EEY05997.1| peptide deformylase-like protein [Brucella pinnipedialis M163/99/10] gi|261739927|gb|EEY27853.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513] gi|261743199|gb|EEY31125.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686] gi|262550657|gb|EEZ06818.1| peptide deformylase-like protein [Brucella ceti M490/95/1] gi|262763989|gb|EEZ10021.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str. Ether] gi|263000442|gb|EEZ13132.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str. Rev.1] gi|263092392|gb|EEZ16645.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str. 63/9] gi|264658907|gb|EEZ29168.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1] Length = 164 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELDRAA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162 >gi|15594411|ref|NP_212199.1| peptide deformylase [Borrelia burgdorferi B31] gi|6014950|sp|O51092|DEF_BORBU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2687938|gb|AAC66445.1| polypeptide deformylase (def) [Borrelia burgdorferi B31] Length = 172 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 10 MVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP II S +FS Y+EGCLSIP D+ R + + + D N + I Sbjct: 70 MAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 126 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 127 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 166 >gi|225452422|ref|XP_002276964.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296087647|emb|CBI34903.3| unnamed protein product [Vitis vinifera] Length = 275 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 86/160 (53%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ L+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 85 IVEYPDPILRAKNKLISTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVG 144 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP++ +S ++ EGCLS P ADV+R + + D +I Sbjct: 145 ERGEGEEIVLVNPRVNKYSKKIVLFNEGCLSFPGIYADVERPESVKIDARDITGARFMIN 204 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL A QHE DHL G LF D ++ D I + L Sbjct: 205 LSGLPARVFQHEFDHLQGTLFFDRMTEEVLDSIHANLQDL 244 >gi|307565540|ref|ZP_07628020.1| peptide deformylase [Prevotella amnii CRIS 21A-A] gi|307345699|gb|EFN91056.1| peptide deformylase [Prevotella amnii CRIS 21A-A] Length = 186 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 96/169 (56%), Gaps = 6/169 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ + P+LR++++ I + ++ LI +M E ++DG+GLAA Q+G R+VVIDL Sbjct: 4 PIYTYGQPVLRKIAQDIPESYPELQELIADMFETCSASDGVGLAAPQVGKPIRVVVIDLD 63 Query: 64 --QDH--AHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D+ ++ FIN I D + V +EGCLS+P V+R + V+++D N Sbjct: 64 VVSDNFPEYKGFRHAFINGHITEVDDTETEVMEEGCLSLPGLHEKVERPKRVRVKWIDEN 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + G LA +QHE DHL G +F D +S ++ MI KKM L+Q Sbjct: 124 MEEHHEWLSGFLARVVQHEFDHLEGKVFTDRVSPFRKQMIKKKMKALLQ 172 >gi|221217366|ref|ZP_03588837.1| peptide deformylase [Borrelia burgdorferi 72a] gi|224533957|ref|ZP_03674542.1| peptide deformylase [Borrelia burgdorferi CA-11.2a] gi|225549696|ref|ZP_03770661.1| peptide deformylase [Borrelia burgdorferi 118a] gi|221192644|gb|EEE18860.1| peptide deformylase [Borrelia burgdorferi 72a] gi|224512960|gb|EEF83326.1| peptide deformylase [Borrelia burgdorferi CA-11.2a] gi|225369656|gb|EEG99104.1| peptide deformylase [Borrelia burgdorferi 118a] Length = 165 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 3 MVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP II S +FS Y+EGCLSIP D+ R + + + D N + I Sbjct: 63 MAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|225549344|ref|ZP_03770317.1| peptide deformylase [Borrelia burgdorferi 94a] gi|225370202|gb|EEG99642.1| peptide deformylase [Borrelia burgdorferi 94a] Length = 165 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 3 MVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP II S +FS Y+EGCLSIP D+ R + + + D N + I Sbjct: 63 MAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|330952315|gb|EGH52575.1| peptide deformylase [Pseudomonas syringae Cit 7] Length = 119 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/119 (47%), Positives = 78/119 (65%), Gaps = 2/119 (1%) Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 Q+ V R+VV+DL + R P VFINP+I +D+ YQEGCLS+P + +V R Sbjct: 1 TQVNVHKRVVVMDLSED--RSEPRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQK 58 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + V+ +D + + + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 59 VRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 117 >gi|150020729|ref|YP_001306083.1| peptide deformylase [Thermosipho melanesiensis BI429] gi|149793250|gb|ABR30698.1| peptide deformylase [Thermosipho melanesiensis BI429] Length = 165 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 98/162 (60%), Gaps = 6/162 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 ++ DPILR+ ++ ++ + + ++ML+ MY DG+GLAA Q+G+ R V+D Sbjct: 5 LYGDPILRKSAKAVKDFKY-LQEIKEDMLKTMYLEDGVGLAAPQVGLSLRFFVMD----- 58 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P+ +NP+II S++ + +EGCLS+P +V+R ++ +++ D + Q + Sbjct: 59 DGSGPLFIVNPEIIAHSEEKEIGEEGCLSLPGIFENVERYKWVKLKFQDEYGKVQTRLFE 118 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 G A +QHE DHL+GILFIDHL + + ++SK++++R Sbjct: 119 GYSARIVQHERDHLDGILFIDHLPNAVKRRLAPELSKIMRMR 160 >gi|206901011|ref|YP_002251154.1| peptide deformylase [Dictyoglomus thermophilum H-6-12] gi|238058219|sp|B5YF46|DEF_DICT6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|206740114|gb|ACI19172.1| peptide deformylase [Dictyoglomus thermophilum H-6-12] Length = 153 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/139 (41%), Positives = 86/139 (61%), Gaps = 6/139 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPIL+ ++ +EKI+ + L +M+E M +G+GLAA Q+G R++V+D +D Sbjct: 10 DPILKTKAKKVEKIDEKVKELARDMIETMKFCNGVGLAAPQVGESLRIIVVDYED----- 64 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 NP+V INP+II S + Y EGCLS+P VKR+ I + D + + + A GLL Sbjct: 65 NPIVLINPEIIEMSGEELDY-EGCLSVPGVEVPVKRAERIVFKAQDLDGRTKKYRAKGLL 123 Query: 131 ATCLQHELDHLNGILFIDH 149 A +QHE+DHL+G+L +D Sbjct: 124 ARVVQHEVDHLDGMLILDR 142 >gi|313672170|ref|YP_004050281.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] gi|312938926|gb|ADR18118.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] Length = 168 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 103/168 (61%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M + ++ +P+P L+ +S + KI+ + ++I ++ + M + +G+AA QIG L R++ Sbjct: 1 MAIREVLTYPNPKLKEISEEVLKIDDYVRSVITDLKDTMEDAGHSVGIAAPQIGELIRVI 60 Query: 60 VIDLQDHAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+D + K P V INP+II + + + ++EGC+S+PDY +V R+ I V+++D Sbjct: 61 VVDPSKNPKCKEHHGPNVMINPEIIKW-EGLTQFREGCMSVPDYTGNVTRAEKILVQFLD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 N + ++ +G A +QHE+DHL+G+LFID + + D+ +K K Sbjct: 120 ENGEQKVFETEGFEAILIQHEIDHLDGVLFIDRIISKRTDLFKRKNYK 167 >gi|332976422|gb|EGK13270.1| peptide deformylase [Desmospora sp. 8437] Length = 156 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 7/154 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ PDPIL+ +RP+ K N + L+D+M + MY G+GLAA Q+G+ R++V Sbjct: 1 MAIRKIVLVPDPILKEKARPVTKFNERLHKLLDDMADTMYDAPGVGLAAPQVGISKRVIV 60 Query: 61 IDLQDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D N ++ +NP++ + EGCLSIP +V+R+ + ++ D Sbjct: 61 VD------DGNGLIEAVNPELFDKEGEQLAPPEGCLSIPGLLGEVRRAEKVRLKARDRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 Q + A+G LA LQHE+DHLNGILF D R+ Sbjct: 115 QFFELEAEGYLARILQHEVDHLNGILFTDIADRV 148 >gi|84685502|ref|ZP_01013400.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654] gi|84666659|gb|EAQ13131.1| peptide deformylase [Rhodobacterales bacterium HTCC2654] Length = 158 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 ++PD LR ++P+E + ++ + D M M + G+GLAAVQ+G++ RL V+D + Sbjct: 1 MWPDKRLRTAAQPVEAVTDEVRAIWDEMTLAMDAMPGVGLAAVQLGIMQRLAVVDASE-- 58 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R + NP+++ S + E ++P A + R +TVR+MD + Sbjct: 59 ERGKAVRMANPEVLHESVKLREHDEASPNLPGVWATISRPRAVTVRFMDETGAVREQDFV 118 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 GL AT +QH++DHLNG ++ DHLS+LKRD + K K Sbjct: 119 GLWATSVQHQIDHLNGKMYFDHLSKLKRDRLIAKARK 155 >gi|167037732|ref|YP_001665310.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256752269|ref|ZP_05493132.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1] gi|320116147|ref|YP_004186306.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687663|sp|B0KA11|DEF_THEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166856566|gb|ABY94974.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748837|gb|EEU61878.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1] gi|319929238|gb|ADV79923.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 159 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 63/143 (44%), Positives = 92/143 (64%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++P+ +INS I+ ++++M + MY DG+GLAA QIGVL RLVVID+ + Sbjct: 11 DEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVVIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ + + V EGCLSIP +VKR + V+Y+D + + I + LL Sbjct: 66 GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGKEREIEGEDLL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A L HE+DHLNG+LFID R Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147 >gi|148977715|ref|ZP_01814276.1| peptide deformylase [Vibrionales bacterium SWAT-3] gi|145963083|gb|EDK28352.1| peptide deformylase [Vibrionales bacterium SWAT-3] Length = 170 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 102/166 (61%), Gaps = 5/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M +P++ PD LR + ++ +++ + LID+ML+ +Y TD GIGLAA Q+G ++ Sbjct: 1 MAIRPIIEVPDDRLRVTYQIVDDVST-VQTLIDDMLDTLYDTDNGIGLAAAQVGHSEAVL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +ID+ ++ R P++ INP+II + +EGCLS+P A V+R + V+ ++ Sbjct: 60 IIDISEN--RDQPLIMINPQIIEH-EGLIDSEEGCLSVPGVYAKVQRHQRVKVQALNRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + I D LA +QHE+DHL+G +FID+LS LKR M KK+ K Sbjct: 117 EAFTIEDDDYLAIVMQHEIDHLHGKIFIDYLSPLKRKMAMKKIKKF 162 >gi|302872125|ref|YP_003840761.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47] gi|302574984|gb|ADL42775.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47] Length = 166 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I+ D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIKIYEDEILRKRSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+ I +S+ V EGCLS+P+ +V+R + V D Sbjct: 61 IDIGEGA-----IELVNPQ-IEYSEGSVVDVEGCLSVPNVWGEVERPQKVVVNAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164 + A+GLLA + HE+DHL+GILF+D + R + + I ++ S+ Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSR 159 >gi|254510887|ref|ZP_05122954.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] gi|221534598|gb|EEE37586.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] Length = 164 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 6/158 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR + + +I DI + D+M++ M + G+GLAA QIGV+ RL V+D Sbjct: 9 WPDKRLRTKAGDVTEITDDIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAVVD--GSTE 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127 R + NP+I+ S + ++E ++P A VKR +TV+++ N Q QI + D Sbjct: 67 RGKAVRLANPEILHSSVELREHEEASPNLPGVSAKVKRPRAVTVKFL--NEQGQIDHRDF 124 Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G+ AT +QH++DHLNG ++ D LS++KRDM+ +K K Sbjct: 125 VGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKK 162 >gi|62317677|ref|YP_223530.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941] gi|62197870|gb|AAX76169.1| Def-1, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941] Length = 164 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A +G+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHVGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELDRAA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162 >gi|118475317|ref|YP_892810.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40] gi|118414543|gb|ABK82963.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40] Length = 172 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 95/153 (62%), Gaps = 4/153 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 ++ +PD L S + K ++++ +D+M + M + +GIGLAA+Q+G R+ +I+L Sbjct: 5 VITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFIINLIN 64 Query: 64 QDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +D KN ++ INPK I+ D VYQEGCLS+P Y DVKR+ I +++ D + Sbjct: 65 EDEVQDKNDLLEIINPKFIS-KDGEIVYQEGCLSVPGYYEDVKRAKDIKIQFQDRFGNLK 123 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + ADGLL+ +QHE DHL+G LFI+ + KR Sbjct: 124 ELEADGLLSVAIQHENDHLDGHLFIEKIGFNKR 156 >gi|257464084|ref|ZP_05628468.1| polypeptide deformylase [Fusobacterium sp. D12] gi|317061604|ref|ZP_07926089.1| polypeptide deformylase [Fusobacterium sp. D12] gi|313687280|gb|EFS24115.1| polypeptide deformylase [Fusobacterium sp. D12] Length = 173 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+++ +E++N +I ++ NM+E MY+ DG+GLAA Q+G+ R+ V D+ Sbjct: 8 YGDSVLRKIAEKVEEVNDEIREILRNMVETMYARDGVGLAAPQVGISLRMFVCDI-GTPE 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 N INP I +++ +EGCLSIP V+R A + + Y + + +G Sbjct: 67 ESNVKKIINPLITPLTEETISVEEGCLSIPGIYKKVERIAKLKLEYQNEQGEFVEEILEG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A +QHE DHL LF+D +S + + MI KK+ L Sbjct: 127 FPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQAL 163 >gi|163744871|ref|ZP_02152231.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45] gi|161381689|gb|EDQ06098.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45] Length = 165 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 83/155 (53%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L + PIE+I +I L +MLE MY+ G GLA Q+G + RL V Sbjct: 1 MSMREVLRWPDPRLAEICAPIEEITPEIEQLAADMLETMYAAPGRGLAGPQVGAMLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++ +P+V INP ++ EGCLSIP D+ R + + + + N Sbjct: 61 MDAGWKENKSDPLVCINPMFQEIGEERVTNTEGCLSIPGISTDISRPSQVQMVWTGLNGG 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + +G A QHE+DHL+G++ DHL R Sbjct: 121 RYVQSFEGAAALIAQHEMDHLDGVVTFDHLDAETR 155 >gi|17985009|gb|AAL54054.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M] Length = 203 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 40 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 99 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 100 LELDRAA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 156 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL Sbjct: 157 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 201 >gi|187778895|ref|ZP_02995368.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC 15579] gi|187772520|gb|EDU36322.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC 15579] Length = 147 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 91/142 (64%), Gaps = 6/142 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ SR IEKI+ I+ L+++M E MYS +G+GLAA Q+G+L R+VVID+ + Sbjct: 9 YGDELLRKKSRKIEKIDDRILTLLEDMAETMYSAEGVGLAAPQVGILKRVVVIDVGE--- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + INP+II ++ EGCLS+P + +V+R + V+ ++ + ++ + Sbjct: 66 --GLIKLINPEIIE-TEGSQKDVEGCLSVPGEQGEVERPYKVKVKALNEKGEQIVLEGEE 122 Query: 129 LLATCLQHELDHLNGILFIDHL 150 LLA HE+DHL+G+LF+D + Sbjct: 123 LLARAFCHEIDHLDGVLFVDKV 144 >gi|298247409|ref|ZP_06971214.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] gi|297550068|gb|EFH83934.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] Length = 172 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 94/152 (61%), Gaps = 3/152 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ DPILR+ ++ I + ++ + L+ +M E M++ DG GLAA QIG+ RL V Sbjct: 1 MSLRNIVMLGDPILRQKAKRIHRFDASLRKLVKDMFETMHANDGAGLAAPQIGLSLRLFV 60 Query: 61 IDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDCN 118 ++L+D K+ + NP+II ++ +GCLSIP Y +V+R+ + V+ D N Sbjct: 61 VELEDPETEKHYKVAMANPEIIK-TEGEQTGLDGCLSIPGYYGVNVRRANKVIVKGQDLN 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + A+G A LQHE+DHLNG+LFID L Sbjct: 120 GKPMKVMAEGYYAWALQHEIDHLNGVLFIDLL 151 >gi|237817222|ref|ZP_04596214.1| peptide deformylase [Brucella abortus str. 2308 A] gi|297249721|ref|ZP_06933422.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196] gi|237788035|gb|EEP62251.1| peptide deformylase [Brucella abortus str. 2308 A] gi|297173590|gb|EFH32954.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196] gi|326410617|gb|ADZ67681.1| peptide deformylase [Brucella melitensis M28] gi|326553909|gb|ADZ88548.1| peptide deformylase [Brucella melitensis M5-90] Length = 214 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 51 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 111 LELDRAA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 212 >gi|326511653|dbj|BAJ91971.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 270 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 83/146 (56%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDP+LR ++ I ++++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 81 VVQYPDPVLRARNKRINTFDNNLRSLADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 140 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP + FS SVY+EGCLS P A+V R + + D + + Sbjct: 141 VKGEGEEIVLVNPVVYKFSKRLSVYEEGCLSFPGIYANVLRPDTVKIDAQDASGAKIKVK 200 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 L A QHE DHL GILF D ++ Sbjct: 201 LSELSARVFQHEFDHLQGILFFDRMT 226 >gi|163853348|ref|YP_001641391.1| peptide deformylase [Methylobacterium extorquens PA1] gi|163664953|gb|ABY32320.1| formylmethionine deformylase [Methylobacterium extorquens PA1] Length = 176 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 10/168 (5%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMN-----LIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 +PL+ +PD L R + P+ + L ++L+ + + +GL A+ IG R+ Sbjct: 4 RPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRPERV 63 Query: 59 VVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 VVI LQ D H V+++P + S + + + EG +S+P V+R A + VRY D Sbjct: 64 VVIRLQPDEPH----AVYVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRYRDL 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL Sbjct: 120 DGAEHEEKAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167 >gi|126728526|ref|ZP_01744342.1| peptide deformylase [Sagittula stellata E-37] gi|126711491|gb|EBA10541.1| peptide deformylase [Sagittula stellata E-37] Length = 163 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P V +PD LR + ++ I +I + +M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTVRPFVPWPDKRLRAAAAQVDAITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R + NP+I+ S ++EG ++P A + R +TV Y+D Sbjct: 61 VDASD--ARGQAVRMANPEILHASVQLRDHEEGSPNLPGVWAKIARPRAVTVAYIDETGL 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL AT +QH++DHLNG ++ D LS++KRDM+ +K K+ Sbjct: 119 RVERDFVGLWATSVQHQVDHLNGRMYFDRLSKVKRDMLIRKARKM 163 >gi|294853733|ref|ZP_06794405.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] gi|294819388|gb|EFG36388.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] Length = 184 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 21 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMCAAPGIGITAPHIGISKRVVV 80 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 81 LELDRAA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL Sbjct: 138 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 182 >gi|256958401|ref|ZP_05562572.1| formylmethionine deformylase [Enterococcus faecalis DS5] gi|256960470|ref|ZP_05564641.1| formylmethionine deformylase [Enterococcus faecalis Merz96] gi|256962963|ref|ZP_05567134.1| formylmethionine deformylase [Enterococcus faecalis HIP11704] gi|257080477|ref|ZP_05574838.1| formylmethionine deformylase [Enterococcus faecalis E1Sol] gi|257083202|ref|ZP_05577563.1| formylmethionine deformylase [Enterococcus faecalis Fly1] gi|257088235|ref|ZP_05582596.1| formylmethionine deformylase [Enterococcus faecalis D6] gi|257091366|ref|ZP_05585727.1| formylmethionine deformylase [Enterococcus faecalis CH188] gi|257417251|ref|ZP_05594245.1| formylmethionine deformylase [Enterococcus faecalis AR01/DG] gi|257417968|ref|ZP_05594962.1| formylmethionine deformylase [Enterococcus faecalis T11] gi|256948897|gb|EEU65529.1| formylmethionine deformylase [Enterococcus faecalis DS5] gi|256950966|gb|EEU67598.1| formylmethionine deformylase [Enterococcus faecalis Merz96] gi|256953459|gb|EEU70091.1| formylmethionine deformylase [Enterococcus faecalis HIP11704] gi|256988507|gb|EEU75809.1| formylmethionine deformylase [Enterococcus faecalis E1Sol] gi|256991232|gb|EEU78534.1| formylmethionine deformylase [Enterococcus faecalis Fly1] gi|256996265|gb|EEU83567.1| formylmethionine deformylase [Enterococcus faecalis D6] gi|257000178|gb|EEU86698.1| formylmethionine deformylase [Enterococcus faecalis CH188] gi|257159079|gb|EEU89039.1| formylmethionine deformylase [Enterococcus faecalis ARO1/DG] gi|257159796|gb|EEU89756.1| formylmethionine deformylase [Enterococcus faecalis T11] Length = 169 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ V Sbjct: 5 LMRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I++ + + R INP II S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 65 IEIDEESGR---FELINPVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 121 EMEVTAYGYLARAFQHEIDHLNGELFIDKM 150 >gi|304404142|ref|ZP_07385804.1| peptide deformylase [Paenibacillus curdlanolyticus YK9] gi|304347120|gb|EFM12952.1| peptide deformylase [Paenibacillus curdlanolyticus YK9] Length = 165 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 3/143 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V PDP+LR V++ + K ++ L+++M + MY +G+GLAA QIG+ R++V+D+ + Sbjct: 6 IVKEPDPVLREVAKEVTKFTPNLHKLLNDMADTMYDAEGVGLAAPQIGISKRVIVVDIGE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +NP +I S+ EGCLSIP+ DV R+ + V D N + Sbjct: 66 E--ESGLIEVVNP-VIVLSEGEQFGPEGCLSIPNLNGDVSRADRVKVAGQDRNGNPIEVD 122 Query: 126 ADGLLATCLQHELDHLNGILFID 148 A G LA QHE+DHLNGILF D Sbjct: 123 ASGFLARAFQHEIDHLNGILFTD 145 >gi|187736350|ref|YP_001878462.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] gi|187426402|gb|ACD05681.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] Length = 182 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 16/173 (9%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + +P+L+ RP+E + + L +NMLE MY+ +GIGLAA Q+ + +LVVID+ Sbjct: 8 YGNPVLKEKCRPVEHFDDSLKTLAENMLETMYAAEGIGLAAPQVSIPIQLVVIDIPKEEE 67 Query: 69 RKN---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 P++F NP + + + EGCLS+ RA V R F+ Sbjct: 68 SVTWLKVNGEDKELSDIMPLMFANPVLEPYGP-MHPFHEGCLSVMKIRASVVRPDFVKAT 126 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + + + I +GLLA CLQHE DHLNGILF++ +S ++ + K+ +L Sbjct: 127 VLLIDGREITIDCNGLLARCLQHECDHLNGILFVERVSSAQKITLRNKLKRLA 179 >gi|239835143|ref|ZP_04683470.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] gi|239821282|gb|EEQ92852.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] Length = 165 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 89/147 (60%), Gaps = 4/147 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V +PD LR V+ P+ +S + L ++L+ M + GIG+ A IG+ RLVV Sbjct: 1 MTVRPIVSYPDKRLRAVADPVTLFDSALQELGTDLLDTMRAAPGIGITAPHIGIAMRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + P ++NP+I+ S++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELPE----AGPKFYVNPQILWASEEKIHHQEGSVSMPGVVDEVERHARIKIRYQDLDGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 Q ++GLLA C QHE+D L+GI +I Sbjct: 117 EQTEESEGLLAVCHQHEIDQLDGIFWI 143 >gi|315453778|ref|YP_004074048.1| polypeptide deformylase [Helicobacter felis ATCC 49179] gi|315132830|emb|CBY83458.1| polypeptide deformylase [Helicobacter felis ATCC 49179] Length = 173 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 96/149 (64%), Gaps = 5/149 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----Q 64 +P LR S + ++ + +++M E M + GIGLAA+Q+GV R+++I+L Sbjct: 9 YPHKKLRTRSSEVRVFDAQLHAFLEDMHETMLARKGIGLAAIQVGVPKRILIINLPREED 68 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + H ++ + INP +IT ++ +++EGCLS+P++ +++R A +T+ Y D + + +++ Sbjct: 69 ETQHPEDRLEIINP-VITHTEGSILWREGCLSVPEFYEEIERHANLTLAYQDRHGESKML 127 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153 A LL+ +QHE+DHLNGILF+D LS L Sbjct: 128 QASELLSVAIQHEMDHLNGILFVDKLSML 156 >gi|126463293|ref|YP_001044407.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|126104957|gb|ABN77635.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] Length = 163 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP L + P E + L +ML MY +G GLAA Q+G + RL V+D Sbjct: 5 PILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFVMDTL 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P VF+NP+I+ ++ +EGCLSIP R V R+ I +R+ Q Sbjct: 64 WKEAPAAPQVFVNPQILWMAEARVEGREGCLSIPGARPLVARAPEIRLRWTSLFGAEQEA 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 G+ A C QHE+DHL+GI+ +D LS RD ++M Sbjct: 124 LLTGIDAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162 >gi|237755423|ref|ZP_04584049.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692423|gb|EEP61405.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] Length = 177 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 8/164 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 I+PDPIL+ ++ ++ + + I+ M E MY +G+GLAA QIG+ Y+++VID Sbjct: 7 IWPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTSLRE 66 Query: 68 HRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +R MV INPKI+ + EGCLS P + + R+ + V + + Sbjct: 67 NRSEEETEPPVKMVLINPKIVEKEGEVQS-TEGCLSFPGVQITIPRAKRVKVVGKNEKGE 125 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I + LA LQHE+DHLNGI FI++LS LKR ++ K K Sbjct: 126 DVEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLK 169 >gi|320537113|ref|ZP_08037086.1| peptide deformylase [Treponema phagedenis F0421] gi|320146038|gb|EFW37681.1| peptide deformylase [Treponema phagedenis F0421] Length = 167 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/146 (41%), Positives = 85/146 (58%), Gaps = 6/146 (4%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR+ S P+E I +I +L+ M M DGIGLAA QIG R+ V + + Sbjct: 11 LRQKSIPVENITEEIKDLVQKMFVTMKIKDGIGLAAPQIGKNIRIFVTGVNNEQR----- 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 VFINP+II S+ Y+EGCLSIP V R +TV+Y + + + + + GLLA Sbjct: 66 VFINPQIIETSEKVCSYEEGCLSIPQIYEKVVRPETVTVQYQNIDGRRKTLQTTGLLARV 125 Query: 134 LQHELDHLNGILFIDHL-SRLKRDMI 158 +QHE DHL+G+LFID + +L+ + I Sbjct: 126 IQHENDHLDGVLFIDRIDEKLREEAI 151 >gi|256394328|ref|YP_003115892.1| peptide deformylase [Catenulispora acidiphila DSM 44928] gi|256360554|gb|ACU74051.1| peptide deformylase [Catenulispora acidiphila DSM 44928] Length = 213 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 9/174 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ I DP+L R P+E+ + + L+ +M MY+ +G+GLAA QIGV R+ V Sbjct: 8 TARPITIVGDPVLHRPCAPVEEFDDRLAGLVADMFASMYAAEGVGLAANQIGVPLRVFVY 67 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D QD H NP++ P DD + EGCLS+P ++ R + V + Sbjct: 68 DCQDDDGVEHVGHVVNPVLAEQPPDRRQLDDSA---EGCLSVPGPHHELARPDYARVTGV 124 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + + G A CLQHE DHL G L+ID LS+ +R + +M ++ + + Sbjct: 125 DLHGEPITVEGTGYFARCLQHEFDHLEGRLYIDRLSKRQRKNVLAEMERMQEEK 178 >gi|160945220|ref|ZP_02092446.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii M21/2] gi|158442951|gb|EDP19956.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii M21/2] gi|295105555|emb|CBL03099.1| peptide deformylase [Faecalibacterium prausnitzii SL3/3] Length = 178 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G++ RL V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMMRRLFV 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P + F+NP+I+ S++ EGCLS P + V R + VR Sbjct: 61 VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPVAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D N + + ADGLL C+QHE DHL+GI ++ D K + Sbjct: 121 AQDRNGEWFELEADGLLGRCIQHENDHLDGITIMESSEYFYEDTEEGKKA 170 >gi|303237149|ref|ZP_07323719.1| peptide deformylase [Prevotella disiens FB035-09AN] gi|302482536|gb|EFL45561.1| peptide deformylase [Prevotella disiens FB035-09AN] Length = 187 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 93/176 (52%), Gaps = 16/176 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ P+LR+V+ I ++ LI +M E ++DGIGLAA QIG RLVVIDL Sbjct: 4 PIYTLGQPVLRKVAEDIPLDYPNLQQLIADMFETCSASDGIGLAAPQIGKSIRLVVIDLD 63 Query: 64 ---------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113 +D H FIN I+ D + +EGCLS+P +V R I V+ Sbjct: 64 VISESFPEYKDFKH-----AFINGHILETDDSETETMEEGCLSLPGIHENVTRPKRIHVK 118 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Y+D N + + DG LA +QHE DH+ G +F D +S ++ +I KKM L Q R Sbjct: 119 YVDENLEEHDEWIDGYLARVIQHEFDHIEGKVFTDRISPFRKQIIAKKMKALSQGR 174 >gi|295100691|emb|CBK98236.1| peptide deformylase [Faecalibacterium prausnitzii L2-6] Length = 178 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G+L R+ V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRVFV 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P + F+NP+I+ S+D EGCLS P + V R + VR Sbjct: 61 VWDTTDAPEEIPENYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D N + + A+GLLA C+QHE DHL+GI ++ Sbjct: 121 AQDRNGEWFELEAEGLLARCIQHENDHLDGITIME 155 >gi|69245426|ref|ZP_00603421.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257879837|ref|ZP_05659490.1| formylmethionine deformylase [Enterococcus faecium 1,230,933] gi|257882563|ref|ZP_05662216.1| formylmethionine deformylase [Enterococcus faecium 1,231,502] gi|257886039|ref|ZP_05665692.1| formylmethionine deformylase [Enterococcus faecium 1,231,501] gi|257891678|ref|ZP_05671331.1| formylmethionine deformylase [Enterococcus faecium 1,231,410] gi|257894153|ref|ZP_05673806.1| formylmethionine deformylase [Enterococcus faecium 1,231,408] gi|258614263|ref|ZP_05712033.1| peptide deformylase [Enterococcus faecium DO] gi|260559510|ref|ZP_05831691.1| formylmethionine deformylase [Enterococcus faecium C68] gi|261206661|ref|ZP_05921359.1| formylmethionine deformylase [Enterococcus faecium TC 6] gi|289565022|ref|ZP_06445476.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|293553674|ref|ZP_06674298.1| peptide deformylase [Enterococcus faecium E1039] gi|293563684|ref|ZP_06678125.1| peptide deformylase [Enterococcus faecium E1162] gi|293570096|ref|ZP_06681176.1| peptide deformylase [Enterococcus faecium E1071] gi|294614918|ref|ZP_06694809.1| peptide deformylase [Enterococcus faecium E1636] gi|294618610|ref|ZP_06698149.1| peptide deformylase [Enterococcus faecium E1679] gi|294623686|ref|ZP_06702519.1| peptide deformylase [Enterococcus faecium U0317] gi|314938232|ref|ZP_07845532.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|314943129|ref|ZP_07849927.1| peptide deformylase [Enterococcus faecium TX0133C] gi|314949326|ref|ZP_07852668.1| peptide deformylase [Enterococcus faecium TX0082] gi|314952260|ref|ZP_07855274.1| peptide deformylase [Enterococcus faecium TX0133A] gi|314992116|ref|ZP_07857566.1| peptide deformylase [Enterococcus faecium TX0133B] gi|314996298|ref|ZP_07861354.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|68195808|gb|EAN10244.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257814065|gb|EEV42823.1| formylmethionine deformylase [Enterococcus faecium 1,230,933] gi|257818221|gb|EEV45549.1| formylmethionine deformylase [Enterococcus faecium 1,231,502] gi|257821895|gb|EEV49025.1| formylmethionine deformylase [Enterococcus faecium 1,231,501] gi|257828038|gb|EEV54664.1| formylmethionine deformylase [Enterococcus faecium 1,231,410] gi|257830532|gb|EEV57139.1| formylmethionine deformylase [Enterococcus faecium 1,231,408] gi|260074609|gb|EEW62930.1| formylmethionine deformylase [Enterococcus faecium C68] gi|260079154|gb|EEW66847.1| formylmethionine deformylase [Enterococcus faecium TC 6] gi|289163229|gb|EFD11075.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|291587468|gb|EFF19352.1| peptide deformylase [Enterococcus faecium E1071] gi|291592204|gb|EFF23822.1| peptide deformylase [Enterococcus faecium E1636] gi|291595129|gb|EFF26467.1| peptide deformylase [Enterococcus faecium E1679] gi|291596901|gb|EFF28119.1| peptide deformylase [Enterococcus faecium U0317] gi|291602249|gb|EFF32477.1| peptide deformylase [Enterococcus faecium E1039] gi|291604368|gb|EFF33861.1| peptide deformylase [Enterococcus faecium E1162] gi|313589542|gb|EFR68387.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|313593330|gb|EFR72175.1| peptide deformylase [Enterococcus faecium TX0133B] gi|313595602|gb|EFR74447.1| peptide deformylase [Enterococcus faecium TX0133A] gi|313598137|gb|EFR76982.1| peptide deformylase [Enterococcus faecium TX0133C] gi|313642428|gb|EFS07008.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|313644275|gb|EFS08855.1| peptide deformylase [Enterococcus faecium TX0082] Length = 163 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+R ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ VI Sbjct: 1 MRYPILIHPNDKLKRTAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + INP+II + S+ EGCLSIP VKR+ +TVRY D + + Sbjct: 61 EVDE----GEKFELINPEIIEAKGE-SLDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|296270495|ref|YP_003653127.1| peptide deformylase [Thermobispora bispora DSM 43833] gi|296093282|gb|ADG89234.1| peptide deformylase [Thermobispora bispora DSM 43833] Length = 162 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/154 (38%), Positives = 89/154 (57%), Gaps = 11/154 (7%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR + P+ + + ++ LID M +VMY+ DG+GLA QIGV R+ V D+ +RK Sbjct: 9 DPVLRTPAEPVTEFDRELRRLIDEMFQVMYAADGVGLAGPQIGVGKRVFVYDI---VNRK 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYR------ADVKRSAFITVRYMDCNAQHQII 124 +V NP++ + V +EGCLS+P A R+A +T+R D + + Sbjct: 66 GHVV--NPELTIDDPEQIVAEEGCLSVPSKETGKPLYAPTPRAAGVTLRGFDRLGRPITV 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 A G+LA C QHE DHLNG L++D L + +R I Sbjct: 124 KARGMLARCFQHEFDHLNGTLYVDRLPKEERRRI 157 >gi|283458224|ref|YP_003362842.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] gi|283134257|dbj|BAI65022.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] Length = 248 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 9/169 (5%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+VI +P+L R + P+ + N ++ L+ +M E M +++G+GLAA QIGV R+ + Sbjct: 62 RPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTYKM 121 Query: 64 QDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ INP KI T D +EGCLS P Y +KR+ ++TV +D + Sbjct: 122 ENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLDEH 181 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A G A C+QHE DHL+G L+++ L++ T KM K+V+ Sbjct: 182 GNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 226 >gi|332559343|ref|ZP_08413665.1| peptide deformylase [Rhodobacter sphaeroides WS8N] gi|332277055|gb|EGJ22370.1| peptide deformylase [Rhodobacter sphaeroides WS8N] Length = 167 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 2/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P V++PD L+ V+ P+E + +I + +M+E M + G GLAA QIGV+ RL V+D Sbjct: 3 RPFVMYPDKRLKTVAAPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVVDC 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + R + NP+I+ S F ++EG ++P A + R +TV +++ + + Sbjct: 63 SE--SRGKAIRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVHFLNEAGETEE 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + AT +QH++DHL+G L+ID LS LKR M+ K K ++ Sbjct: 121 RDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164 >gi|326203181|ref|ZP_08193047.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] gi|325986827|gb|EGD47657.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] Length = 159 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 92/154 (59%), Gaps = 6/154 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 + +LR++SRP+E I+ I++L+++M + MY DG+GLAA QIGVL R+VVID+ D + Sbjct: 11 EEVLRKISRPVENIDKKILSLLEDMADTMYRADGVGLAAPQIGVLKRMVVIDVGDGLYE- 69 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 INP I+ S + EGCLSI VKR +T++Y D N + I A Sbjct: 70 ----MINPVILEQSGEQDGI-EGCLSILGVLGKVKRPMNVTLKYTDRNGEDITIEASEFF 124 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A + HELDHL+GIL+ D ++ + ++M K Sbjct: 125 ARAICHELDHLDGILYKDKAYKMYTEKEFEEMQK 158 >gi|222086074|ref|YP_002544606.1| peptide deformylase [Agrobacterium radiobacter K84] gi|221723522|gb|ACM26678.1| peptide deformylase [Agrobacterium radiobacter K84] Length = 164 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPDP+L+ P+ + + +L ++++ M + G+G+ A IGVL R+ V Sbjct: 1 MSVRSIIRFPDPLLKTTCAPVTIFDDGLHSLAIDLVDTMRAAPGVGITAAHIGVLRRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+L + +INP+I FS++ + EG +S+P +V R I RY D + + Sbjct: 61 IEL---SREDGIRTYINPEITWFSEETMRHMEGSVSMPGITDEVVRPRAIRFRYQDIDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+G+ ++ LS+LKRD + KK K Sbjct: 118 AHEAAAEDFLAICIQHEVDQLDGLFWLQRLSKLKRDRLVKKWEK 161 >gi|86131930|ref|ZP_01050527.1| peptide deformylase [Dokdonia donghaensis MED134] gi|85817752|gb|EAQ38926.1| peptide deformylase [Dokdonia donghaensis MED134] Length = 196 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 12/175 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + P+L++ ++ I ++ L++NM E MY G+GLAA Q+G+ R+ ++D Sbjct: 4 PIVAYGSPVLKKKAKDITPEYPNLSELLENMYETMYGAHGVGLAAPQVGLPIRIFLVDTT 63 Query: 65 DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A ++ FIN +I+ + + EGCLSIP DV R +T+ Sbjct: 64 PFADDESFTPEEQKQLSSFKKTFINAEILEEEGEEWAFSEGCLSIPGINEDVFRKPTVTI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +Y D N + +GL+A +QHE DH++GILF D LS LK+ +I K++ + + Sbjct: 124 KYQDENFKEHTETYEGLIARVIQHEYDHIDGILFTDKLSSLKKRLIKGKLANISK 178 >gi|54025579|ref|YP_119821.1| peptide deformylase [Nocardia farcinica IFM 10152] gi|54017087|dbj|BAD58457.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152] Length = 185 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DPILR + + + + ++ L+ ++ + M+ G+G+AA QIGV R+ V Sbjct: 1 MTIQPVRLFGDPILRARASEVTEFDRELRQLVTDLTDTMHDDGGVGMAAPQIGVGLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D A +NP D+ V EGCLSIP R D +R+ + VR +D + Sbjct: 61 YDTGDAAGH-----LVNPTYTVVGDEEQVGPEGCLSIPGLRYDTRRALRVHVRGVDMHGA 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 AD LLA C+QHE DHL+G+LFID L R Sbjct: 116 PVEFDADELLARCVQHETDHLDGVLFIDRLDPAAR 150 >gi|255326017|ref|ZP_05367105.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] gi|255296908|gb|EET76237.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] Length = 228 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 9/169 (5%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+VI +P+L R + P+ + N ++ L+ +M E M +++G+GLAA QIGV R+ + Sbjct: 42 RPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTYKM 101 Query: 64 QDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ INP KI T D +EGCLS P Y +KR+ ++TV +D + Sbjct: 102 ENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLDEH 161 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A G A C+QHE DHL+G L+++ L++ T KM K+V+ Sbjct: 162 GNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 206 >gi|300726436|ref|ZP_07059884.1| peptide deformylase [Prevotella bryantii B14] gi|299776284|gb|EFI72846.1| peptide deformylase [Prevotella bryantii B14] Length = 185 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 99/172 (57%), Gaps = 12/172 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI +M + + +++G+GLAA QIG RLVVIDL Sbjct: 4 PIYVYGQPVLRKVASDITPDYPELKQLIQDMFQTLDNSNGVGLAAPQIGKAIRLVVIDLD 63 Query: 64 -------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + RK VFIN I+ + D S +EGCLSIP +V R I V+YM Sbjct: 64 ILKDEFPEYEGFRK---VFINAHILEYDDTQESRMEEGCLSIPGLSENVVRPTRIHVKYM 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D N + +G A +QHE DHL GI+++D ++ L+++MI K+ +++ Sbjct: 121 DENFVEHDEWVEGYKARVMQHEFDHLEGIMYVDKVNALRKNMIGGKLKNIMK 172 >gi|163738220|ref|ZP_02145636.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] gi|161388836|gb|EDQ13189.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] Length = 169 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 3/152 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +PDP+L ++PI ++ L +MLE MY+ G GLAA Q+GVL RL V Sbjct: 1 MAVLPIRAWPDPVLSTPAKPI-ATPGNVETLARDMLETMYAAPGRGLAAPQVGVLIRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA- 119 +D ++P+V +NP I+ S + + EGCLSI +V R A++ + + D + Sbjct: 60 MDTTWKEGTRDPLVCVNPDIVALSVEMATMSEGCLSIKGVSLEVTRPAWVDLAWSDLHGV 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +HQ + +G A C+QHE DHL G + D +S Sbjct: 120 RHQRRF-EGFAAACVQHEYDHLEGRVTFDRVS 150 >gi|134299560|ref|YP_001113056.1| peptide deformylase [Desulfotomaculum reducens MI-1] gi|134052260|gb|ABO50231.1| peptide deformylase [Desulfotomaculum reducens MI-1] Length = 152 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 5/150 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V D ILR ++P++++ +I L+DNM + MY +G+GLAA QIGV R++V+D+ + Sbjct: 6 IVEIGDEILREKAKPVKEVTPNIHKLLDNMADTMYEANGVGLAAPQIGVSKRVIVVDIGE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + INP+I+ S EGCLS+P+ +V R+ + V+ ++ + + Sbjct: 66 -----GLIELINPEIVEVSGHTVTDTEGCLSVPNMIGEVSRADKLVVKGLNRKGEEVLYR 120 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A LA QHE+DHL GI+F+D S L++ Sbjct: 121 AKDFLARAFQHEIDHLEGIIFVDKASNLRK 150 >gi|291288165|ref|YP_003504981.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] gi|290885325|gb|ADD69025.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] Length = 167 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 100/171 (58%), Gaps = 11/171 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++++PD L+ ++ +EK++ + +LID M E +ST G+AA QIG Sbjct: 1 MAVREVLVYPDTRLKEMAEDVEKLDDHAKQVVRDLIDTMEESGHST---GIAATQIGEKL 57 Query: 57 RLVVIDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R+VV D + +N +V INP+I+ + ++EGC+S+PDY +V R+ I ++ Sbjct: 58 RIVVADASKNKKCENNHGRLVLINPEILKWEGMLQ-FREGCMSVPDYTGNVNRARKILIK 116 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Y D N + ++I A+G A LQHE DHL+G LFID + + D+ +K K Sbjct: 117 YNDENFEEKVIEAEGFEAVLLQHETDHLDGTLFIDRVISKRTDLFRRKKYK 167 >gi|332290887|ref|YP_004429496.1| peptide deformylase [Krokinobacter diaphorus 4H-3-7-5] gi|332168973|gb|AEE18228.1| peptide deformylase [Krokinobacter diaphorus 4H-3-7-5] Length = 196 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 12/170 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + DP+L++ ++ I LI+NM + MY G+GLAA QIG+ R+ ++D Sbjct: 4 PIVAYGDPVLKKKAKDITPEYPKFSELIENMYDTMYEAHGVGLAAPQIGLPIRVFLVDTT 63 Query: 65 DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A ++ F+N +I+ + + EGCLSIP DV R +T+ Sbjct: 64 PFAEDESYTPEEQEQLANFKKTFVNAEILEEEGEEWAFSEGCLSIPGINEDVFRKPKVTI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 RY D N + DGL+A +QHE DH+ G+LF D LS LK+ +I K+ Sbjct: 124 RYRDENFKEYTETYDGLIARVIQHEYDHIEGVLFTDKLSSLKKRLIKGKL 173 >gi|110678659|ref|YP_681666.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114] gi|109454775|gb|ABG30980.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114] Length = 165 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 95/157 (60%), Gaps = 2/157 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR + + +I +++ + D+M++ M + G+GLAA QIGV+ RL V+D D Sbjct: 9 WPDARLRTAAADVAEITPEVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAVVDASDTRD 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R+ + NP+II S + ++E ++P A ++R +TVR+MD + G Sbjct: 69 RR--IRLANPEIIEASAIMNDHEEASPNLPGVFAKIRRPRGVTVRFMDETGTYVQRDFVG 126 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L AT +QH++DHL G ++ D+LS++KRDM+ +K KL Sbjct: 127 LEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163 >gi|225574496|ref|ZP_03783106.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM 10507] gi|225038283|gb|EEG48529.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM 10507] Length = 174 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+L + RP+E++N LID+ML+ MY G+GLAA Q+GVL R+VV Sbjct: 16 MALRQIRVEGDPVLTKKCRPVEEMNDRTRQLIDDMLDTMYEAMGVGLAAPQVGVLKRIVV 75 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INPKI+ S + EGCLSIP +V R ++ + N + Sbjct: 76 IDVGE-----GPLVMINPKIVETSGE-QTGDEGCLSIPGMAGEVTRPNYVKAIAFNENME 129 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + LLA + HE DHL+GI++ H++ Sbjct: 130 EFEVEGTELLARAICHECDHLDGIMYTAHVN 160 >gi|170759595|ref|YP_001787825.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] gi|169406584|gb|ACA54995.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] Length = 147 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 92/143 (64%), Gaps = 8/143 (5%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ SR IEKI+ I+ L+++M+E MYS +G+GLAA Q+G+L R VVID+ + Sbjct: 9 YGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVVIDVGEGLI 68 Query: 69 RKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + INP+II T + V EGCLS+P + +V+R + V+ ++ + ++ + Sbjct: 69 K-----LINPEIIETEGNQKDV--EGCLSVPGEQGEVERPYKVKVKALNEKGEEIVLEGE 121 Query: 128 GLLATCLQHELDHLNGILFIDHL 150 LLA HE+DHL+G+LF+D + Sbjct: 122 DLLARAFCHEIDHLDGVLFVDKV 144 >gi|255525805|ref|ZP_05392735.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296186362|ref|ZP_06854766.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255510538|gb|EET86848.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296049163|gb|EFG88593.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 156 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ F D IL+R SR +EK++ +++ L++++ + +Y+ GIGLAA QIGVL +++ Sbjct: 1 MAVKQILQFGDNILKRSSRRVEKVDEELLGLVEDLKDSLYNGTGIGLAAPQIGVLKKVIF 60 Query: 61 IDLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 IDL+D + P++ INPKII + SV EGCLS P Y V R + V Sbjct: 61 IDLRD---KTEPILLINPKIIKKIGKEDSV--EGCLSYPGYEGIVVRPKKVIVAGKSLKW 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A+GLLA HE+DHL+GIL+ D ++ R Sbjct: 116 EDVEYTAEGLLAKAFCHEIDHLSGILYTDKAKKIYR 151 >gi|288923166|ref|ZP_06417311.1| peptide deformylase [Frankia sp. EUN1f] gi|288345479|gb|EFC79863.1| peptide deformylase [Frankia sp. EUN1f] Length = 185 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 5/155 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ DP+LR + + ++ + L+DNM+E MY+ G+GLAA Q+GV ++ V D + Sbjct: 2 PIRTLGDPVLRTPAEAVTVFDAALRRLVDNMIETMYAAPGVGLAAPQVGVSLQVFVFDTE 61 Query: 65 ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D A + P+V +NP + T + EGCLS+P + R+A TVR +D Sbjct: 62 YDPRDVAVPRRPLVVVNPVLETGPGE-QHDDEGCLSVPGHAYPTTRAATATVRGVDATGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 ADGLLA C QHE DHL+G L+ID L+ R Sbjct: 121 AVRYEADGLLARCFQHETDHLHGRLYIDRLTGEDR 155 >gi|163743814|ref|ZP_02151187.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161382963|gb|EDQ07359.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] Length = 169 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 3/152 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +PDP+L ++PI D+ L +ML+ MY+ G GLAA Q+GVL RL V Sbjct: 1 MAVLPIRAWPDPVLSTPAKPI-ATPRDVETLARDMLDTMYAAPGRGLAAPQVGVLIRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA- 119 +D ++P+V +NP I+ S + + EGCLSI +V R A++ + + D Sbjct: 60 MDTTWKEGTRDPLVCVNPDIVALSAETATMSEGCLSIKGVSLEVTRPAWVDLAWSDLQGV 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +HQ + +G A C+QHE DHL G + D +S Sbjct: 120 RHQRRF-EGFAAACVQHEYDHLEGRVTFDRVS 150 >gi|161511100|ref|NP_770645.2| peptide deformylase [Bradyrhizobium japonicum USDA 110] Length = 165 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV +PD L +RP+ + ++ L ++L+ M + GIG+ A IGV R+VV Sbjct: 1 MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + ++NP+I S + +++EG +S+P +V+R A + + Y D + Sbjct: 61 LELD---AKDGARTYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q ++ L A C QHE+D L+G+ +I LSRLKR+ + KK K+ Sbjct: 118 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKM 162 >gi|188997413|ref|YP_001931664.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932480|gb|ACD67110.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] Length = 177 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 8/163 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----- 63 +PDPIL+ ++ ++ + + I+ M E MY +G+GLAA QIG+ Y+++VID Sbjct: 8 WPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTSLREK 67 Query: 64 --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ A MV INPKI+ + EGCLS P + + R+ + V + + Sbjct: 68 RSEEEAEPPVKMVLINPKIVEKEGEVQS-TEGCLSFPGVQITIPRAKRVKVVGKNEKGED 126 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I + LA LQHE+DHLNGI FI++LS LKR ++ K K Sbjct: 127 VEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLK 169 >gi|196234527|ref|ZP_03133350.1| peptide deformylase [Chthoniobacter flavus Ellin428] gi|196221407|gb|EDY15954.1| peptide deformylase [Chthoniobacter flavus Ellin428] Length = 187 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 16/175 (9%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V + +P+LR R ++ ++ I L +MLE M + +G+GLAA QIGV ++ VID+ Sbjct: 5 IVKYGNPVLREKGREVKDVDEKIKQLSVDMLETMRAANGVGLAAQQIGVPIQMTVIDVAG 64 Query: 66 HAHRKN---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 R + P+V +NP ++ FS++ EGCLS PD A++ RS+ + Sbjct: 65 IEDRPSAMWINDKEVPIEEHMPLVLLNP-VLKFSEEKESGNEGCLSFPDITAEITRSSGV 123 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + A GLLA LQHE DHL+G+LFID ++ + I+ K+ +L Sbjct: 124 QCTATLLDGKKIEFEAAGLLARALQHETDHLHGVLFIDRMNAATKAGISGKLKRL 178 >gi|302844969|ref|XP_002954024.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f. nagariensis] gi|300260836|gb|EFJ45053.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f. nagariensis] Length = 177 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 4/166 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDP LR V+ I + ++ L + M+EVMY DG+GLAA Q+GV RL+V + Sbjct: 13 IVKYPDPRLRAVNARIGVFDDSLLRLANEMIEVMYQDDGVGLAAPQVGVNIRLMVFNPAG 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH-QII 124 N + +NP+I+ + +EGCLS P DV+RS ITV+ +D N Q ++ Sbjct: 73 RDRPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQITVKALDANGQPVRLQ 132 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 D +A QHE DHL G+LF D R+K ++ LV L + Sbjct: 133 LTDPWVARIFQHEYDHLQGVLFHD---RMKPSVLEAVRPALVALEE 175 >gi|289523051|ref|ZP_06439905.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503594|gb|EFD24758.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 165 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 6/153 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P+PILR ++ + N D+ LI++M E MY+ DG+GLAA Q+G+ + V+D + Sbjct: 6 VIKYPNPILRSKNKIVTAFNDDLKKLIEDMYETMYANDGLGLAAPQVGINLMVAVVDYEG 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +NP I+ + +EGCLS P+ D++R + + D N + I Sbjct: 66 KKY-----TLVNPAILEKRGE-QTGREGCLSFPEVFEDIERPEIVKIEAFDENGEKYAIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 A GLLA HE+DHL+G L ID +S +KR+MI Sbjct: 120 ASGLLARAFCHEIDHLHGRLIIDMVSPVKRNMI 152 >gi|227554544|ref|ZP_03984591.1| peptide deformylase [Enterococcus faecalis HH22] gi|257078288|ref|ZP_05572649.1| formylmethionine deformylase [Enterococcus faecalis JH1] gi|293385128|ref|ZP_06630954.1| peptide deformylase [Enterococcus faecalis R712] gi|293389101|ref|ZP_06633573.1| peptide deformylase [Enterococcus faecalis S613] gi|294779979|ref|ZP_06745359.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|307273623|ref|ZP_07554851.1| peptide deformylase [Enterococcus faecalis TX0855] gi|307288889|ref|ZP_07568862.1| peptide deformylase [Enterococcus faecalis TX0109] gi|307292141|ref|ZP_07572007.1| peptide deformylase [Enterococcus faecalis TX0411] gi|312910850|ref|ZP_07769686.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|227176342|gb|EEI57314.1| peptide deformylase [Enterococcus faecalis HH22] gi|256986318|gb|EEU73620.1| formylmethionine deformylase [Enterococcus faecalis JH1] gi|291077605|gb|EFE14969.1| peptide deformylase [Enterococcus faecalis R712] gi|291081569|gb|EFE18532.1| peptide deformylase [Enterococcus faecalis S613] gi|294452960|gb|EFG21382.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|306496794|gb|EFM66345.1| peptide deformylase [Enterococcus faecalis TX0411] gi|306500161|gb|EFM69505.1| peptide deformylase [Enterococcus faecalis TX0109] gi|306509636|gb|EFM78678.1| peptide deformylase [Enterococcus faecalis TX0855] gi|311288873|gb|EFQ67429.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|315034825|gb|EFT46757.1| peptide deformylase [Enterococcus faecalis TX0027] gi|315150901|gb|EFT94917.1| peptide deformylase [Enterococcus faecalis TX0012] gi|315164416|gb|EFU08433.1| peptide deformylase [Enterococcus faecalis TX1302] gi|315167224|gb|EFU11241.1| peptide deformylase [Enterococcus faecalis TX1341] gi|315172963|gb|EFU16980.1| peptide deformylase [Enterococcus faecalis TX1346] gi|315573272|gb|EFU85463.1| peptide deformylase [Enterococcus faecalis TX0309B] gi|327536241|gb|AEA95075.1| formylmethionine deformylase [Enterococcus faecalis OG1RF] Length = 164 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 4/149 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 1 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + R INP II S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 61 EIDEESGR---FELINPVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145 >gi|261419369|ref|YP_003253051.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297530654|ref|YP_003671929.1| peptide deformylase [Geobacillus sp. C56-T3] gi|319766184|ref|YP_004131685.1| peptide deformylase [Geobacillus sp. Y412MC52] gi|261375826|gb|ACX78569.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297253906|gb|ADI27352.1| peptide deformylase [Geobacillus sp. C56-T3] gi|317111050|gb|ADU93542.1| peptide deformylase [Geobacillus sp. Y412MC52] Length = 157 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 4/148 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V +PDPIL + P+ + + L+D+M E M + DG+GLAA QIGV ++ VID+ Sbjct: 5 PIVTYPDPILEQPCAPVTAFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQIAVIDVG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R + INP +I + V EGCLS P +V R+ F+ VR + + + Sbjct: 65 DEHGR---IELINPVVIEARGE-QVDVEGCLSFPGLFGEVPRAKFVKVRAQNRRGRPFTL 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 A G LA LQHE+DHL+G+LF + R Sbjct: 121 SATGFLARALQHEIDHLHGVLFTSKVIR 148 >gi|126738019|ref|ZP_01753740.1| peptide deformylase [Roseobacter sp. SK209-2-6] gi|126720516|gb|EBA17221.1| peptide deformylase [Roseobacter sp. SK209-2-6] Length = 165 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + + +I ++ ++++ M + G+G+ A QIGV+ RL V Sbjct: 1 MSVRPCLPWPDQRLRTAATEVVEITDEVRTTWQDLIDTMEAMPGVGMGANQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+I+ S ++E ++P A +KR +TVRYMD N + Sbjct: 61 VD--GSSERGRAVRMANPEILHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118 Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 I D G+ AT +QH++DHL+G L+ D LS++KRDM+ KK K Sbjct: 119 --ITERDFVGIEATSVQHQIDHLDGKLYFDRLSKVKRDMLIKKSKKF 163 >gi|254465693|ref|ZP_05079104.1| peptide deformylase [Rhodobacterales bacterium Y4I] gi|206686601|gb|EDZ47083.1| peptide deformylase [Rhodobacterales bacterium Y4I] Length = 165 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 6/160 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR + + +I ++ + ++M++ M + G+GLAA QIGV+ RL V+D A Sbjct: 9 WPDKRLRTKAEEVTEITDEVREIWNDMVDTMEAMPGVGLAANQIGVMLRLAVVD--GSAE 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127 R + NP+I+ S + + E ++P A +KR +TVRY+ N Q I D Sbjct: 67 RGRAVKLANPEILHASIELREHDEASPNLPGVSAKIKRPRAVTVRYL--NEQGMIDRRDF 124 Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 G+ AT +QH++DHLNG ++ D LS++KRDM+ +K KL Sbjct: 125 VGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLIRKAKKLT 164 >gi|154485069|ref|ZP_02027517.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC 27560] gi|149734022|gb|EDM50141.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC 27560] Length = 165 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 87/141 (61%), Gaps = 1/141 (0%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 +P LR++ +P++++N LI +M + MY +G+GLAA Q+G+L R+ V+D D Sbjct: 11 EPCLRKICKPVKEVNLRTKILIGDMFDTMYEANGVGLAAPQVGILKRIFVVDCGDEEGNS 70 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P VFINP+II + Y EGCLS+P V R+ + V+ + N + + A+GLL Sbjct: 71 VPYVFINPEIIDREGVQTGY-EGCLSVPGKSGMVPRAQKVKVKAFNENMEEFEMEAEGLL 129 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A C+ HE DHL+GI+++D + Sbjct: 130 ARCILHENDHLDGIVYVDKVE 150 >gi|39931120|sp|Q89N37|DEFL_BRAJA RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|27352266|dbj|BAC49270.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110] Length = 170 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV +PD L +RP+ + ++ L ++L+ M + GIG+ A IGV R+VV Sbjct: 6 MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + ++NP+I S + +++EG +S+P +V+R A + + Y D + Sbjct: 66 LELD---AKDGARTYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 122 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q ++ L A C QHE+D L+G+ +I LSRLKR+ + KK K+ Sbjct: 123 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKM 167 >gi|83855043|ref|ZP_00948573.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] gi|83842886|gb|EAP82053.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] Length = 155 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PD L V P+ +I LI +M + MY+ G GLAA Q+G R+ V D Sbjct: 6 IVTWPDARLTAVCAPVATRTPEIDQLIADMFDTMYAAPGRGLAAPQVGRTERIFVFDAGW 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I++ SD ++ +EGCLSIP D+ R+ +T+R+ D + H+ + Sbjct: 66 KEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADGTHERKF 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A G A +QHE DHL+GI+ D +++ Sbjct: 126 A-GAEAVIVQHEYDHLDGIVIYDRVAQ 151 >gi|83941566|ref|ZP_00954028.1| peptide deformylase [Sulfitobacter sp. EE-36] gi|83847386|gb|EAP85261.1| peptide deformylase [Sulfitobacter sp. EE-36] Length = 155 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 1/147 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PD L V P+ +I LI +M E MY+ G GLAA Q+G R+ V D Sbjct: 6 IVTWPDARLTAVCAPVATRTPEIDQLIADMFETMYAAPGRGLAAPQVGRTERIFVFDAGW 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I++ SD ++ +EGCLSIP D+ R+ +T+R+ D + H+ + Sbjct: 66 KEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADGTHERKF 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 G A +QHE DHL+GI+ D +++ Sbjct: 126 T-GAEAVIVQHEYDHLDGIVIYDRVAQ 151 >gi|297544786|ref|YP_003677088.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842561|gb|ADH61077.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 159 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 59/143 (41%), Positives = 93/143 (65%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++P+ +INS ++ ++D+M++ MY +G+GLAA Q+G+L RL+VID+ + Sbjct: 11 DEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIVIDIGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ + + V EGCLSIP +VKR + V+Y+D + + I + LL Sbjct: 66 GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGKEREIEGEDLL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A L HE+DHLNG+LFID R Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147 >gi|108804305|ref|YP_644242.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941] gi|108765548|gb|ABG04430.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941] Length = 164 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 5/156 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 F DP+L+ + P++ + + L + M E M +G+GLAA Q+G L R+ V +++D Sbjct: 8 FGDPVLKSRAAPVKTFDGALARLAEEMFETMREHEGVGLAANQVGRLKRIFVAEVEDRR- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +V +NP I S+ +EGCLSIP R +V+R A + + + + I A+G Sbjct: 67 ----LVVVNPAIEEASERTERAEEGCLSIPGVRVEVERPAAVVLTGQNLDGSPLRIEAEG 122 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA LQHE DHL+G+L +D + R R +++ + Sbjct: 123 LLARVLQHETDHLDGVLILDRVDRETRRAALRELRE 158 >gi|15888871|ref|NP_354552.1| peptide deformylase [Agrobacterium tumefaciens str. C58] gi|23396558|sp|Q8UF49|DEFL_AGRT5 RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|15156637|gb|AAK87337.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58] Length = 164 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L + P+ + + L+ ++++ M + G+G+ A IGVL R+ V Sbjct: 1 MAIRPILPYPHAGLSGICAPVTVFDDHLRELVTDLIDTMRAAPGVGITAAHIGVLQRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +INP+I + S + EG +S+P + +V+R + + VR+ D Sbjct: 61 LELTP----GTILTYINPEITSHSPQTMRHVEGSVSMPGFTDEVERPSTVEVRFQDITGA 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q A+G A C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 117 EQTETAEGFHAICIQHEIDQLDGIFWLKRLSRLKRDRLVKKWEK 160 >gi|302386506|ref|YP_003822328.1| peptide deformylase [Clostridium saccharolyticum WM1] gi|302197134|gb|ADL04705.1| peptide deformylase [Clostridium saccharolyticum WM1] Length = 163 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 5/157 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+ +P+++I I L+++M E MY ++G+GLAA Q+GVL ++VVID++D Sbjct: 11 DEILRKQCKPVKEITPRITELVEDMFETMYDSNGVGLAASQVGVLKQIVVIDVEDG---- 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 N V INP+I+ + EGCLS+P V R ++ ++ D + + + +GLL Sbjct: 67 NQYVLINPEILE-TRGSQTGPEGCLSVPGKSGTVTRPEYVRIKAYDASMEPYELEGEGLL 125 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A + HE DHLNG L++D + D+ + V+ Sbjct: 126 ARAICHECDHLNGDLYVDKVEGELEDVTPDEEEGEVE 162 >gi|327200562|pdb|3M6Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41q Mutant In Complex With Actinonin Length = 193 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 88/160 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ NL+D M +VMY TD IGL+A Q+G+ +L+V + Sbjct: 3 IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDQIGLSAPQVGLNVQLMVFNPAG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 63 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L A QHE DHL G+LF D ++ D I +++ L Sbjct: 123 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 162 >gi|118340581|gb|ABK80631.1| putative formylmethionine deformylase [uncultured marine Nitrospinaceae bacterium] Length = 169 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 102/161 (63%), Gaps = 5/161 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ 64 ++++PD L++VS+P+E+ + D+ I+N+ E S G +G+AA Q+G L R+V++D+ Sbjct: 6 ILVYPDERLKQVSQPVEEFSEDLKKFIENLEETFRSFPGCVGIAAPQVGRLERIVLVDIS 65 Query: 65 DHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + N +V INP++I F + S+ +EGCLS+PD+ V+RS I ++ ++ + Sbjct: 66 HKSKHVNHGFLVLINPEVI-FYEGNSLGREGCLSVPDFIGKVERSKSINLKALNQKGEKL 124 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + G A +QHE+DHLNG LF+D L +R+ ++K++ Sbjct: 125 ELQMSGYEARAVQHEIDHLNGKLFLDRLVS-RRNSLSKRIE 164 >gi|167763509|ref|ZP_02435636.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC 43183] gi|167698803|gb|EDS15382.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC 43183] Length = 184 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 66/168 (39%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+VV+DL Sbjct: 4 PVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVVDLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ K +IN I+ S + +EGCLS+P VKR I V+Y+D + Sbjct: 64 VLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLDEDL 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +FIDHLS L+R MI K++ +++ Sbjct: 124 VEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRRQMIKGKLNAMLK 171 >gi|260427470|ref|ZP_05781449.1| peptide deformylase [Citreicella sp. SE45] gi|260421962|gb|EEX15213.1| peptide deformylase [Citreicella sp. SE45] Length = 164 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + P+E I +I + +M++ M + G+GL A QIGV+ RL V Sbjct: 1 MTARLCIPWPDKRLRTPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+++ S + E ++P A + R + VR++ NA+ Sbjct: 61 VDASEK--RGEAVRMANPEVLHASVKLRSHDEASPNLPGVWASIDRPRAVAVRFL--NAE 116 Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +I D GL AT +QH++DHLNG ++ DHLS++KRDM+ ++ K Sbjct: 117 GEIEERDFVGLWATSVQHQIDHLNGRMYFDHLSKVKRDMLLRRAKK 162 >gi|312111728|ref|YP_003990044.1| peptide deformylase [Geobacillus sp. Y4.1MC1] gi|311216829|gb|ADP75433.1| peptide deformylase [Geobacillus sp. Y4.1MC1] Length = 157 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 4/148 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V +P IL + P+++ + ++ L+++M + M DG+GLAA Q+G+ ++ V+D+ Sbjct: 5 PIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAVVDVG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R + INP+I+ + + EGCLS P A+VKR+ ++ VR D + + Sbjct: 65 DEHGR---IELINPRIMEARGE-QIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGRPFTL 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 A G LA LQHE+DHLNGILF + R Sbjct: 121 KATGFLARALQHEIDHLNGILFTSKVIR 148 >gi|126738020|ref|ZP_01753741.1| peptide deformylase [Roseobacter sp. SK209-2-6] gi|126720517|gb|EBA17222.1| peptide deformylase [Roseobacter sp. SK209-2-6] Length = 168 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 5/144 (3%) Query: 12 PILRR----VSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 PILR +S+ E++ S + +L+ +M E MY+ G GLAA Q+GV++RL V+D Sbjct: 5 PILRWPHEGLSKRCEEVAPSTLGSLVADMFETMYAAPGRGLAAPQVGVMHRLFVMDATWK 64 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 +P+V INP+I+ + + EGCLSIP DV+RS + +R+ D Q + Sbjct: 65 EGPGSPVVMINPEIMAYDGGTDILAEGCLSIPGITIDVERSKSVNMRWQDQAGDWQERWF 124 Query: 127 DGLLATCLQHELDHLNGILFIDHL 150 G A C+QHE DHL G + DHL Sbjct: 125 SGFEARCIQHEFDHLEGRVTFDHL 148 >gi|260167211|ref|ZP_05754022.1| peptide deformylase [Brucella sp. F5/99] gi|261756615|ref|ZP_06000324.1| peptide deformylase-like protein [Brucella sp. F5/99] gi|261736599|gb|EEY24595.1| peptide deformylase-like protein [Brucella sp. F5/99] Length = 164 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A K ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELDRAAGSK---IYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162 >gi|57168634|ref|ZP_00367766.1| polypeptide deformylase [Campylobacter coli RM2228] gi|305432738|ref|ZP_07401898.1| peptide deformylase [Campylobacter coli JV20] gi|57019915|gb|EAL56595.1| polypeptide deformylase [Campylobacter coli RM2228] gi|304444247|gb|EFM36900.1| peptide deformylase [Campylobacter coli JV20] Length = 175 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 100/165 (60%), Gaps = 4/165 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV+K ++ +P+ L S P+++ + ++ L+D+M + M ++ G+GLAA+Q+ + R ++ Sbjct: 1 MVRK-IITYPNSRLFLNSEPVKQFDQELHTLLDDMYDTMIASQGVGLAAIQVDIPLRALI 59 Query: 61 IDLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ D +++ + INP+II ++ EGCLS+PD+ +V+R I ++Y D Sbjct: 60 VNILDENEEQKKEDLLEIINPQIIPLGEEKITCTEGCLSVPDFFEEVERYNHILLKYQDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + + A G LA +QHE DHLNG LFI+ +S LKR K+ Sbjct: 120 FGNFKELEAQGFLAVAIQHENDHLNGHLFIEKISFLKRQKFDKEF 164 >gi|163744870|ref|ZP_02152230.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45] gi|161381688|gb|EDQ06097.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45] Length = 165 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 93/159 (58%), Gaps = 2/159 (1%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 V++PD LR + PIE + +I L D+M+E M + G+GLAA QIGV+ ++ V+D + Sbjct: 7 VLWPDKRLRSPAEPIEAVTDEIRTLWDDMIETMDAMPGVGLAAPQIGVMLQVAVVDASEA 66 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 +++ + NP II S Y+E ++P + A ++R + VR++D Sbjct: 67 RNKR--IRLANPVIIDASAVLHPYEEASPNLPGFSAVIRRPRGVKVRFLDETGAEVERDF 124 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL A +QH++DHL G ++ D+LS+ KRDM+ +K KL Sbjct: 125 VGLEAVSVQHQIDHLAGKMYFDNLSKTKRDMLLRKARKL 163 >gi|257899948|ref|ZP_05679601.1| formylmethionine deformylase [Enterococcus faecium Com15] gi|257837860|gb|EEV62934.1| formylmethionine deformylase [Enterococcus faecium Com15] Length = 163 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+R ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ VI Sbjct: 1 MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGKNKRIAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + INP+II + S+ EGCLSIP VKR+ +TVRY D + + Sbjct: 61 EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|86137255|ref|ZP_01055833.1| peptide deformylase [Roseobacter sp. MED193] gi|85826579|gb|EAQ46776.1| peptide deformylase [Roseobacter sp. MED193] Length = 168 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 2/155 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L + P+ + D+ LI +M E MY+ G GLAA Q+GVL RL V Sbjct: 1 MALLPILQWPDAGLSTLCTPVGE--EDLTRLIADMFETMYAAPGRGLAAPQVGVLKRLFV 58 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P+V INP+ ++ D EGCLSIP V R +++R+ D + Sbjct: 59 MDATWKEAPGTPLVMINPEFLSVGADLESGDEGCLSIPGVLTSVPRPKTVSLRWQDQDRN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 DG A C+QHE DHL G++ ++ L+ R Sbjct: 119 WTSGSFDGFAARCIQHEYDHLEGLVTLNRLTPAAR 153 >gi|159463814|ref|XP_001690137.1| peptide deformylase [Chlamydomonas reinhardtii] gi|158284125|gb|EDP09875.1| peptide deformylase [Chlamydomonas reinhardtii] Length = 248 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 4/166 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PDP LR V+ I + +M L M+E+MY DG+GLAA Q+GV RL+V + Sbjct: 58 IIKYPDPRLRAVNAKINVFDESLMRLAKEMIEIMYQDDGVGLAAPQVGVNVRLMVFNPMG 117 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH-QII 124 N + +NP+I+ + +EGCLS P DV+RS I V+ +D Q ++ Sbjct: 118 RDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQINVKALDATGQPVKLT 177 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 D +A QHE DHL G+LF D R+K ++ +LV L + Sbjct: 178 LTDPWVARIFQHEFDHLQGVLFHD---RMKPSVLETVRPELVALEE 220 >gi|167626939|ref|YP_001677439.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596940|gb|ABZ86938.1| Peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 172 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 5/162 (3%) Query: 9 FPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 +P PIL+ +++ + E+I+ D I M E+M +G+GLAA+Q+G+ R + + D+ Sbjct: 8 YPHPILKEIAKEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFFI--MYDN 65 Query: 67 AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P + + +EGCLS P A + R+ + ++ ++ Q + Sbjct: 66 LESETPKIITIINPKIIDQSGKIIDEEGCLSFPGVSAKINRATRVKIKALNEFGQEIEVE 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D LA C+QHE+DHLNG+ F DHL LKR MI KK KL+Q Sbjct: 126 KDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQ 167 >gi|326783953|ref|YP_004324347.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7] gi|310003965|gb|ADO98360.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7] Length = 128 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 77/121 (63%) Query: 31 LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY 90 L D M E M+++DGIGLAA Q+G+ R++V+D H K + +NPKI S++ ++ Sbjct: 4 LYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVLF 63 Query: 91 QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 EGCLS+PD +V R I V + + + +++ DGL A +QHE+DHL GILF+D+ Sbjct: 64 DEGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYF 123 Query: 151 S 151 + Sbjct: 124 N 124 >gi|241667516|ref|ZP_04755094.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876062|ref|ZP_05248772.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842083|gb|EET20497.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 172 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 5/162 (3%) Query: 9 FPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 +P PIL+ +++ + E+I+ D I M E+M +G+GLAA+Q+G+ R + + D+ Sbjct: 8 YPHPILKEIAQEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFFI--MYDN 65 Query: 67 AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P + + +EGCLS P A V R+ + ++ ++ Q + Sbjct: 66 LESETPKIITIINPKIIDQSGKIIDEEGCLSFPGVSAKVNRATRVKIKALNEFGQEIEVE 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D LA C+QHE+DHLNG+ F DHL LKR MI KK KL+Q Sbjct: 126 KDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQ 167 >gi|115438779|ref|NP_001043669.1| Os01g0637600 [Oryza sativa Japonica Group] gi|75251983|sp|Q5VNN5|DEF1B_ORYSJ RecName: Full=Peptide deformylase 1B, chloroplastic; Short=OsPDF1B; Short=PDF 1B; Flags: Precursor gi|55297005|dbj|BAD68576.1| putative polygalacturonase [Oryza sativa Japonica Group] gi|55297594|dbj|BAD68940.1| putative polygalacturonase [Oryza sativa Japonica Group] gi|113533200|dbj|BAF05583.1| Os01g0637600 [Oryza sativa Japonica Group] gi|164633054|gb|ABY64740.1| peptide deformylase 1B1 [Oryza sativa Japonica Group] gi|215741408|dbj|BAG97903.1| unnamed protein product [Oryza sativa Japonica Group] Length = 269 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 80/146 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 80 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 139 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP + S VY+EGCLS P A+V R + + D + Sbjct: 140 VKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 199 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 GL A QHE DHL GILF D +S Sbjct: 200 LSGLSARVFQHEFDHLQGILFFDRMS 225 >gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex aeolicus VF5] gi|6014949|sp|O66847|DEF_AQUAE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2983203|gb|AAC06802.1| polypeptide deformylase [Aquifex aeolicus VF5] Length = 169 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 6/167 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 +VI+P+ IL++ + ++ I+ ++ NLI +M + MY +G+GLAA QIGV ++VID Sbjct: 5 IVIYPNEILKKPTEKVDVIDKEVKNLIRDMFDTMYEAEGVGLAANQIGVPLSVMVIDTSP 64 Query: 64 -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +D K +V INP+I Y+EGCLS P +V+R + V ++ + + Sbjct: 65 KEDAPPLK--LVLINPEIKEGEGKIK-YKEGCLSFPGLSVEVERFQKVKVNALNEHGEPV 121 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G A QHELDHL GI F+D L +R M +K KL++ R Sbjct: 122 ELTLEGFPAIVFQHELDHLKGITFVDRLKGWRRRMALEKYQKLLKSR 168 >gi|170754628|ref|YP_001782053.1| peptide deformylase [Clostridium botulinum B1 str. Okra] gi|169119840|gb|ACA43676.1| peptide deformylase [Clostridium botulinum B1 str. Okra] Length = 147 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 56/143 (39%), Positives = 92/143 (64%), Gaps = 8/143 (5%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ SR IEKI+ I+ L+++M+E MY+ +G+GLAA Q+G+L R VVID+ + Sbjct: 9 YGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVVIDVGEGLI 68 Query: 69 RKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + INP+II T + V EGCLS+P + +V+R + V+ ++ + ++ + Sbjct: 69 K-----LINPEIIETEGNQKDV--EGCLSVPGEQGEVERPYKVKVKALNEKGEEVVLEGE 121 Query: 128 GLLATCLQHELDHLNGILFIDHL 150 LLA HE+DHL+G+LF+D + Sbjct: 122 DLLARAFCHEIDHLDGVLFVDKV 144 >gi|89052959|ref|YP_508410.1| formylmethionine deformylase [Jannaschia sp. CCS1] gi|88862508|gb|ABD53385.1| formylmethionine deformylase [Jannaschia sp. CCS1] Length = 164 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 8/161 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P V +PD LR ++ + + + +M++ M + G+GLAA QIGV+ RL V+D Sbjct: 4 RPFVPYPDKRLRTMAETVGPVTDAHREIWQDMIDTMDAMPGVGLAAPQIGVMLRLAVVDA 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD---CNAQ 120 D R + +P+II+ SD+ + Y EG ++P A + R A +TV + D + Sbjct: 64 SD--DRGQAIRMADPEIISASDEMNTYPEGSPNLPGVTAKITRPARVTVAFTDHMGLRVR 121 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + L AT +QH++DHL G +++DHLSR KR+M+ KK Sbjct: 122 QEFV---DLWATSVQHQIDHLAGKVYVDHLSRTKREMVIKK 159 >gi|327398717|ref|YP_004339586.1| peptide deformylase [Hippea maritima DSM 10411] gi|327181346|gb|AEA33527.1| Peptide deformylase [Hippea maritima DSM 10411] Length = 168 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 95/163 (58%), Gaps = 6/163 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLVVID 62 + +VI+PD L+ + I+ IN + + + ++LE M Y +G+AA QIG L R++ +D Sbjct: 4 RDIVIYPDQRLKAICDEIKNINDEALQVAKDLLETMRYYNHTVGIAAPQIGELVRIIAVD 63 Query: 63 LQDHAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + ++ INP+I+ +S +EGCLS+PDY +V R+ ITV+Y D + Sbjct: 64 ASKNKKGQKINHGELIMINPEILDWSSIIKT-REGCLSVPDYTGNVNRARKITVKYWDLD 122 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + +G A +QHE+DHL+GILFID + + D+ +K Sbjct: 123 GKEHQFDTEGFEAVVIQHEIDHLDGILFIDRIISKRTDLFRRK 165 >gi|189218929|ref|YP_001939570.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum V4] gi|238692077|sp|B3DUG9|DEF_METI4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189185787|gb|ACD82972.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum V4] Length = 190 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 15/174 (8%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 LV++ +PILR+ PI+ + + L+ +MLE M G+GLAA Q+G+ +L VID+ Sbjct: 5 LVLYDNPILRKKGMPIDSFDDRLKRLVQDMLETMAYYKGVGLAAQQVGLNLQLAVIDVSG 64 Query: 66 H--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 P+ INP ++++ + EGCLS P R DV RS + Sbjct: 65 SKLSSSLLIGGKPAMVEEHMPLFLINP-TLSYTQSKEISNEGCLSFPGLRIDVPRSKRVK 123 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 V+ D + A G L+ +QHE DHL G LFID+LS ++ I +++ K+ Sbjct: 124 VKTFDLEGRPWYFEAGGFLSVAIQHEFDHLQGKLFIDYLSAEQKKAIKEELEKI 177 >gi|327200563|pdb|3M6R|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin gi|327200564|pdb|3M6R|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin gi|327200565|pdb|3M6R|C Chain C, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin gi|327200566|pdb|3M6R|D Chain D, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin Length = 193 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 88/160 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ NL+D M +VMY TD IGL+A Q+G+ +L+V + Sbjct: 3 IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDMIGLSAPQVGLNVQLMVFNPAG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 63 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L A QHE DHL G+LF D ++ D I +++ L Sbjct: 123 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 162 >gi|195941804|ref|ZP_03087186.1| polypeptide deformylase (def) [Borrelia burgdorferi 80a] gi|223889134|ref|ZP_03623723.1| peptide deformylase [Borrelia burgdorferi 64b] gi|224533042|ref|ZP_03673648.1| peptide deformylase [Borrelia burgdorferi WI91-23] gi|226320763|ref|ZP_03796319.1| peptide deformylase [Borrelia burgdorferi 29805] gi|226322023|ref|ZP_03797548.1| peptide deformylase [Borrelia burgdorferi Bol26] gi|223885383|gb|EEF56484.1| peptide deformylase [Borrelia burgdorferi 64b] gi|224512036|gb|EEF82431.1| peptide deformylase [Borrelia burgdorferi WI91-23] gi|226232613|gb|EEH31367.1| peptide deformylase [Borrelia burgdorferi Bol26] gi|226233818|gb|EEH32543.1| peptide deformylase [Borrelia burgdorferi 29805] Length = 165 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 3 MVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP II S + S Y+EGCLSIP D+ R + + + D N + I Sbjct: 63 MAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|312148406|gb|ADQ31065.1| peptide deformylase [Borrelia burgdorferi JD1] gi|312149552|gb|ADQ29623.1| peptide deformylase [Borrelia burgdorferi N40] Length = 165 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 3 MVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP II S + S Y+EGCLSIP D+ R + + + D N + I Sbjct: 63 MAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|167630201|ref|YP_001680700.1| peptide deformylase [Heliobacterium modesticaldum Ice1] gi|238687984|sp|B0TGS8|DEF_HELMI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167592941|gb|ABZ84689.1| peptide deformylase [Heliobacterium modesticaldum Ice1] Length = 151 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR ++P+ + NS++ LID+M + M + G+GLAA QIG+ R+ V+++ K Sbjct: 11 DPVLREKAKPVTRFNSNLGRLIDDMFDTMAAARGVGLAAPQIGIGKRVCVVEVG-----K 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +NP+II ++ EGCLSIPDY VKR + V+ D + I LL Sbjct: 66 RRFELVNPEIIE-AEGEQCDAEGCLSIPDYTGRVKRFQRVRVKAQDRKGETFIAEGTDLL 124 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A QHE+DHL+GILF+D + Sbjct: 125 AVAFQHEIDHLDGILFVDRVE 145 >gi|58176979|pdb|1V3Y|A Chain A, The Crystal Structure Of Peptide Deformylase From Thermus Thermophilus Hb8 gi|58176980|pdb|1V3Y|B Chain B, The Crystal Structure Of Peptide Deformylase From Thermus Thermophilus Hb8 Length = 192 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 14/164 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-VVIDL 63 P+ ++ DP+LRR +RP+E S I L ++MLE M+ G+GLAA QIG+ RL V ++ Sbjct: 4 PIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEY 62 Query: 64 QDH--AHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITV 112 D + P+ V NP +IT+ + EG LS+P Y +V R+ I V Sbjct: 63 ADEPEGEEERPLRELVRRVYVVANP-VITYREGLVEGTEGXLSLPGLYSEEVPRAERIRV 121 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 Y D + +++ +G +A QHE+DHL+GILF + L + KR+ Sbjct: 122 EYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKRE 165 >gi|38233909|ref|NP_939676.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129] gi|38200170|emb|CAE49851.1| Putative peptide deformylase [Corynebacterium diphtheriae] Length = 169 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 1/155 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+L S +E +S I NL+++MLE M + G+GLAA Q+GV R+ V Sbjct: 1 MAIRDIRLFGDPVLTTKSSDVEVFDSSIRNLVNDMLETMDAAGGVGLAANQVGVTKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H INP +D + EGCLSIPD + + +R ++V D + Sbjct: 61 YDCS-HIEDGLRGHIINPVWEPIGEDIQIGPEGCLSIPDVQEETERWMTVSVSGRDVDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A GL+A C+QHE DHL+G+LF+ L ++ R Sbjct: 120 PISLVASGLMARCIQHETDHLDGVLFLRKLDKVHR 154 >gi|34541765|ref|NP_906244.1| peptide deformylase [Porphyromonas gingivalis W83] gi|39930820|sp|Q7MT07|DEF_PORGI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|34398083|gb|AAQ67143.1| polypeptide deformylase [Porphyromonas gingivalis W83] Length = 189 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I + LI NM E MY +DGIGLAA QIG+ R++VID Sbjct: 4 PIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVIDAD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ V IN I +D EGCLS+P V+R I +RY+D + Sbjct: 64 PLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVDEDF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q G A +QHE DH++G LFIDH+S +++ +I K+ +++ Sbjct: 124 QPHEEVLQGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIK 171 >gi|225628893|ref|ZP_03786927.1| peptide deformylase [Brucella ceti str. Cudo] gi|225616739|gb|EEH13787.1| peptide deformylase [Brucella ceti str. Cudo] Length = 214 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 51 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A K ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 111 LELDRAAGSK---IYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 212 >gi|326389546|ref|ZP_08211113.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200] gi|325994551|gb|EGD52976.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200] Length = 159 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 62/143 (43%), Positives = 91/143 (63%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++P+ +IN I+ ++++M + MY DG+GLAA QIGVL RLVVID+ + Sbjct: 11 DEVLRKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVVIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ + + V EGCLSIP +VKR + V+Y+D + + I + LL Sbjct: 66 GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGKEREIEGEDLL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A L HE+DHLNG+LFID R Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147 >gi|255535832|ref|YP_003096203.1| peptide deformylase [Flavobacteriaceae bacterium 3519-10] gi|255342028|gb|ACU08141.1| Peptide deformylase [Flavobacteriaceae bacterium 3519-10] Length = 190 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 13/159 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ F D +LR+ + I K D+ LI NM + M S GIGLAA Q+G+ RL ++DL Sbjct: 4 PIRAFGDAVLRKHCQEITKDYPDLDELIANMFDTMNSAHGIGLAAPQVGLDIRLFIVDLS 63 Query: 64 -----QDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +D+A + + V IN KI+ + + + EGCLSIPD R DVKR I + Sbjct: 64 PLAEDEDYADIADELKDFKKVLINAKILEETGEEWKFNEGCLSIPDIREDVKRKETIVIE 123 Query: 114 YMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y D N +H ++D + A +QHE DH+ GILF DHLS Sbjct: 124 YYDENFVKHTDTFSD-MRARVIQHEYDHIEGILFTDHLS 161 >gi|332299918|ref|YP_004441839.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707] gi|332176981|gb|AEE12671.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707] Length = 188 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 5/170 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR +S I ++ LI +M + MY +DG+GLAA QIG RL VID Sbjct: 6 PIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQVIDAT 65 Query: 65 DHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 A + +V IN + + S++ EGCLS+P V R I V YM+ Sbjct: 66 PLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPESIVVDYMNEQF 125 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q + G A +QHE DHL+G LF+DH+S +++ MI KK+ + + R Sbjct: 126 EPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175 >gi|313157241|gb|EFR56671.1| peptide deformylase [Alistipes sp. HGB5] Length = 181 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 5/156 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI+ + +LR+ I ++ L+++M + + +G+GLAA QIG RL ++D Sbjct: 4 PIVIYGNEVLRKQCEEIAPDYPEVKKLVEDMFQTLGEAEGVGLAAPQIGKAIRLFIVDCT 63 Query: 65 -----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D FINP+I FS++ Y EGCLS P ADV RS I +RY+D N Sbjct: 64 PWGEDDPECADYKRAFINPEIYAFSEEKKTYNEGCLSFPGIHADVPRSLAIRMRYLDENF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 GL A +QHE DH+ G++F D +S L+R Sbjct: 124 VEHDEEFHGLKAWVIQHEYDHIEGVVFTDRISPLRR 159 >gi|271966900|ref|YP_003341096.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270510075|gb|ACZ88353.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 182 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 6/172 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ +P+L R + + + D+ L+ +M MY+ +G+GLAA QIG+ R+ V Sbjct: 8 TARPITFVGEPVLHRPCETVTRFDDDLAMLVADMFASMYAAEGVGLAANQIGIGLRVFVY 67 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D V +NP ++ D Y EGCLS+P RA + R V D Sbjct: 68 DCPDETEEFRKGVVVNPTLVMPGPDEEHLDDYAEGCLSVPGQRASLARPDRAVVHGFDVT 127 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + GLLA CLQHE DHL G L+ID L +R+ + ++ Q RD Sbjct: 128 GAPVTVEGTGLLARCLQHETDHLEGRLYIDRLPAERREQV---LAAYEQERD 176 >gi|121533703|ref|ZP_01665530.1| peptide deformylase [Thermosinus carboxydivorans Nor1] gi|121307694|gb|EAX48609.1| peptide deformylase [Thermosinus carboxydivorans Nor1] Length = 154 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 86/143 (60%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L+ + P+ KI+ + L+D+M + MY+ +G+GLAA Q+GV R++V+D+ D Sbjct: 11 DKVLKEKAAPVGKIDRKVKQLLDDMAQTMYAAEGVGLAAPQVGVSLRIIVVDVGD----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP +I ++ EGCLS+P +V+R A + V ++ + + I GLL Sbjct: 66 GLIELINP-VIVAAEGSETNTEGCLSVPGVYGEVERYAQVVVEGLERSGKKVRITGTGLL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A LQHE+DHL+G+LFI+ L Sbjct: 125 ARALQHEIDHLDGVLFIEKAKTL 147 >gi|222618926|gb|EEE55058.1| hypothetical protein OsJ_02762 [Oryza sativa Japonica Group] Length = 267 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 80/146 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 80 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 139 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP + S VY+EGCLS P A+V R + + D + Sbjct: 140 VKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 199 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 GL A QHE DHL GILF D +S Sbjct: 200 LSGLSARVFQHEFDHLQGILFFDRMS 225 >gi|313886414|ref|ZP_07820134.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I] gi|312924130|gb|EFR34919.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I] Length = 188 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 5/170 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR +S I ++ LI +M + MY +DG+GLAA QIG RL VID Sbjct: 6 PIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQVIDAT 65 Query: 65 DHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 A + +V IN + + S++ EGCLS+P V R I V YM+ Sbjct: 66 PLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPKSIVVDYMNEQF 125 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q + G A +QHE DHL+G LF+DH+S +++ MI KK+ + + R Sbjct: 126 EPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175 >gi|299140626|ref|ZP_07033764.1| peptide deformylase [Prevotella oris C735] gi|298577592|gb|EFI49460.1| peptide deformylase [Prevotella oris C735] Length = 187 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 7/170 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ P+LR+V++ I + LI +M E + +++GIGLAA QIG R+VVIDL Sbjct: 4 PIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVIDLD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D+ K FIN I+ F +D +EGCLS+P V R I V+Y D Sbjct: 64 VLSDDYPEYKGLRKAFINAHILEFDEDSPKETIEEGCLSLPGLSEKVTRPTRIHVKYQDE 123 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + DG LA +QHE DHL G +FID + L++ MI K+ +++ Sbjct: 124 DFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMK 173 >gi|297811599|ref|XP_002873683.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319520|gb|EFH49942.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 273 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 87/160 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 83 IVEYPDPILRAKNKRIGVFDQNLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP I +SD + EGCLS P A+V R + + D + I Sbjct: 143 EPGEGEEIVLVNPIIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 L A QHE DHL G+LF D ++ D I +++ L Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 242 >gi|154490274|ref|ZP_02030535.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC 43184] gi|154089166|gb|EDN88210.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC 43184] Length = 185 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 95/168 (56%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+ + + D+ L+ NM E MY+ DG+GLAA Q+G+ RL+VID Sbjct: 4 PVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVIDAD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D K INP + S++ +EGCLS+P V RSA + V+Y+D + Sbjct: 64 VMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSAKVRVKYLDEDL 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G A +QHE +HL G +FID++S ++R + K++ +++ Sbjct: 124 KEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIK 171 >gi|253580144|ref|ZP_04857411.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA] gi|251848663|gb|EES76626.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA] Length = 158 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/138 (40%), Positives = 84/138 (60%), Gaps = 6/138 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L +VSRP+EK+ I +LI +MLE MY G+GLAA Q+G+L R+VVID+ + Sbjct: 11 DEVLAKVSRPVEKMTPRIHDLIGDMLETMYDAMGVGLAAPQVGMLKRIVVIDIGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I+ S + EGCLS+P V R ++ V+ +D + +GLL Sbjct: 66 GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKALDEDMNEVEYEGEGLL 124 Query: 131 ATCLQHELDHLNGILFID 148 A HE+DHL+G ++ + Sbjct: 125 ARAFCHEIDHLDGHMYTE 142 >gi|320108553|ref|YP_004184143.1| peptide deformylase [Terriglobus saanensis SP1PR4] gi|319927074|gb|ADV84149.1| peptide deformylase [Terriglobus saanensis SP1PR4] Length = 187 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 18/157 (11%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR+ +R + E ++ I L+ NM E M+ G+GLAA QIG +L V++ + Sbjct: 10 DPVLRKQARALSQEEILSPAIQELVKNMRETMWRAPGVGLAAPQIGESLQLAVLEGRPQF 69 Query: 68 HRK-----------NP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 H+K P + NPKI S Y EGCLSIP + A V RS + V Sbjct: 70 HKKMNEAEVKEWQSTPYDYLAIFNPKIELLPAHVSAY-EGCLSIPGFMASVPRSQSVRVT 128 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ A+ Q+I A+G A LQHE+DHLNG+L+ID + Sbjct: 129 CLNEKAEPQVIEAEGWFARILQHEIDHLNGVLYIDRM 165 >gi|148380464|ref|YP_001255005.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|153931783|ref|YP_001384687.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153937071|ref|YP_001388208.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|153938227|ref|YP_001391806.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|168180607|ref|ZP_02615271.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|226949863|ref|YP_002804954.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|148289948|emb|CAL84061.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|152927827|gb|ABS33327.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152932985|gb|ABS38484.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|152934123|gb|ABS39621.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|182668570|gb|EDT80549.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|226842477|gb|ACO85143.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|295319831|gb|ADG00209.1| peptide deformylase [Clostridium botulinum F str. 230613] gi|322806777|emb|CBZ04346.1| peptide deformylase [Clostridium botulinum H04402 065] Length = 147 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/143 (39%), Positives = 92/143 (64%), Gaps = 8/143 (5%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ SR IEKI+ I+ L+++M+E MY+ +G+GLAA Q+G+L R VVID+ + Sbjct: 9 YGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVVIDVGEGLI 68 Query: 69 RKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + INP+II T + V EGCLS+P + +V+R + V+ ++ + ++ + Sbjct: 69 K-----LINPEIIETEGNQKDV--EGCLSVPGEQGEVERPYKVKVKALNEKGEEIVLEGE 121 Query: 128 GLLATCLQHELDHLNGILFIDHL 150 LLA HE+DHL+G+LF+D + Sbjct: 122 DLLARAFCHEIDHLDGVLFVDKV 144 >gi|312622713|ref|YP_004024326.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002] gi|312203180|gb|ADQ46507.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002] Length = 166 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+I + +V EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGA-----IELVNPEIEQVEGN-AVDVEGCLSVPNVWGEVERPQKVIVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+GLLA + HE+DHL+GILF+D + R Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147 >gi|188995931|ref|YP_001930183.1| peptide deformylase [Porphyromonas gingivalis ATCC 33277] gi|238689275|sp|B2RMJ1|DEF_PORG3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188595611|dbj|BAG34586.1| putative peptide deformylase [Porphyromonas gingivalis ATCC 33277] Length = 189 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I + LI NM E MY +DGIGLAA QIG+ R++VID Sbjct: 4 PIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVIDAD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ V IN I +D EGCLS+P V+R I +RY+D + Sbjct: 64 PLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVDEDF 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q G A +QHE DH++G LFIDH+S +++ +I K+ +++ Sbjct: 124 QPHEEVLHGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIK 171 >gi|241204791|ref|YP_002975887.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858681|gb|ACS56348.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 164 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 3/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P++ +P P L+ V P+ +S + L ++L M + G+G+ A IGV+ R+ V++L Sbjct: 4 RPILRYPHPGLKTVCAPVTAFDSSLTALAGDLLATMRAAPGVGITAAHIGVVSRVTVLEL 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D A +++NP I FS + + EG +S+P +V R I RY D Sbjct: 64 -DKA--DGVRLYVNPHITWFSQETMSHVEGSVSMPGATDEVTRPRAIRFRYQDAEGAVHE 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 121 DGAEDFLAICVQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161 >gi|254519243|ref|ZP_05131299.1| peptide deformylase [Clostridium sp. 7_2_43FAA] gi|226912992|gb|EEH98193.1| peptide deformylase [Clostridium sp. 7_2_43FAA] Length = 147 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/140 (40%), Positives = 87/140 (62%), Gaps = 4/140 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D LR+ + + +I + LI++M + MY DG+GLAA Q+G+L R+ VID+ D + Sbjct: 11 DEALRKKCKVVTEITPRTLKLIEDMADTMYEADGVGLAAPQVGILQRIFVIDIYDDYGLR 70 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 VFINP+I+ S + +EGCLS+P ADV+R ++ V+ ++ + ++ A LL Sbjct: 71 ---VFINPEILEVSGS-QLGEEGCLSVPGEVADVERPNYVKVKALNEKGEEFVLEATELL 126 Query: 131 ATCLQHELDHLNGILFIDHL 150 A + HE DHLNG LFID+L Sbjct: 127 ARAILHENDHLNGTLFIDYL 146 >gi|84514540|ref|ZP_01001904.1| peptide deformylase [Loktanella vestfoldensis SKA53] gi|84511591|gb|EAQ08044.1| peptide deformylase [Loktanella vestfoldensis SKA53] Length = 152 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 76/138 (55%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR V+ P+ + D+ L+ ML MY+ G GLAA Q+GV R+ VID Sbjct: 10 DPVLRAVAEPVTAFDEDLALLVAEMLATMYAAPGRGLAAPQVGVSQRVFVIDTTWKDGDP 69 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +P F+NP+II S + E CLSIPD V R ++ +R+ D Q DG+ Sbjct: 70 DPQAFVNPQIIARSKTTATAVEACLSIPDRAFAVTRPIWVDMRWQDIAGDVQQGRFDGVA 129 Query: 131 ATCLQHELDHLNGILFID 148 A C+ HE DHL+G+L D Sbjct: 130 AICVCHEYDHLDGVLITD 147 >gi|225552226|ref|ZP_03773166.1| peptide deformylase [Borrelia sp. SV1] gi|225371224|gb|EEH00654.1| peptide deformylase [Borrelia sp. SV1] Length = 165 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ +E I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 3 MVFYPNDLLRVKTKQVENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP II S + S Y+EGCLSIP D+ R + + + D N + I Sbjct: 63 MAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|71892002|ref|YP_277732.1| peptide deformylase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123761479|sp|Q493I1|DEF_BLOPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71796108|gb|AAZ40859.1| polypeptide deformylase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 173 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 89/148 (60%), Gaps = 3/148 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PD LR ++ P+ ++ D +I++M + MY GIGLAA Q+ + +++VIDL Sbjct: 6 ILYYPDKRLRTIADPVVAVSDDTNQIINDMFDTMYFKKGIGLAATQVNIHQQIIVIDL-- 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + K +VFINP I + S+ E CLSIP V RS IT++ +D + Sbjct: 64 YKKNKQRLVFINPSITKKTGIISI-PESCLSIPQIYEIVPRSEKITIQSLDQYGNKFEME 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153 A+ LLA C+QHE+DHL G LFIDHLS L Sbjct: 123 ANNLLAICIQHEVDHLFGKLFIDHLSPL 150 >gi|325107786|ref|YP_004268854.1| peptide deformylase [Planctomyces brasiliensis DSM 5305] gi|324968054|gb|ADY58832.1| peptide deformylase [Planctomyces brasiliensis DSM 5305] Length = 198 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 82/150 (54%), Gaps = 2/150 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-Q 64 +V++P P LR S P+++INS + +D M +MY GIGLAA Q+ + Y+L VI+L Sbjct: 3 IVLYPHPALRYKSVPVQEINSALRKTVDEMFGLMYDAKGIGLAANQVALPYQLFVINLTA 62 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D A + MVFINP I+ +EGCLS P+ V RSA I V D Sbjct: 63 DPAEKSEEMVFINPTILKRRGQ-ETGEEGCLSFPEMFGPVDRSAEIVVEAFDLRGALFRY 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLK 154 + A +QHE DH+ G LFIDH+ + Sbjct: 122 ELSEMAARAVQHENDHIEGTLFIDHMKEAE 151 >gi|83951627|ref|ZP_00960359.1| peptide deformylase [Roseovarius nubinhibens ISM] gi|83836633|gb|EAP75930.1| peptide deformylase [Roseovarius nubinhibens ISM] Length = 165 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 6/164 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P + +PD LR + + I + L D M+ VM + G+GLAAVQ+G ++RL V+D Sbjct: 3 RPCIPWPDKRLRTPAEDVAAITDETCALWDEMIAVMEAMPGVGLAAVQLGEMHRLAVVDA 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + R + NP+++ S ++E ++P A + R +TVR++ N + +I Sbjct: 63 S--SERGQAVRMANPEVLHASAQLREHEEASPNLPGVSAKISRPRAVTVRFL--NQEGEI 118 Query: 124 IYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D GL AT +QH++DHL G ++ D LS++KRDM+ ++ KL Sbjct: 119 EERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARKL 162 >gi|332559342|ref|ZP_08413664.1| Peptide deformylase [Rhodobacter sphaeroides WS8N] gi|332277054|gb|EGJ22369.1| Peptide deformylase [Rhodobacter sphaeroides WS8N] Length = 163 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + E + L +ML MY +G GLAA Q+G + RL V Sbjct: 1 MAVLPILRWPDPRLSQACTAAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ ++ EGCLSIP R V R+ I +R+ Sbjct: 60 MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q + G+ A C QHE+DHL+GI+ +D LS RD ++M Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162 >gi|295399762|ref|ZP_06809743.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] gi|294978165|gb|EFG53762.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] Length = 157 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 88/148 (59%), Gaps = 4/148 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V +P IL + P+++ + ++ L+++M + M DG+GLAA Q+G+ ++ V+D+ Sbjct: 5 PIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAVVDVG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R + INP+I+ + + EGCLS P A+VKR+ ++ VR D + + Sbjct: 65 DEHGR---IELINPRIMEARGE-QIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGRPFTL 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 A G LA LQHE+DHLNG+LF + R Sbjct: 121 KATGFLARALQHEIDHLNGMLFTSKVIR 148 >gi|222529031|ref|YP_002572913.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725] gi|254767570|sp|B9MR36|DEF_ANATD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|222455878|gb|ACM60140.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725] Length = 166 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 99/165 (60%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+I + +V EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGA-----IELVNPEIEQV-EGSAVDVEGCLSVPNVWGEVERPQKVVVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164 + A+GLLA + HE+DHL+GILF+D + R + + I ++ S+ Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSR 159 >gi|228470000|ref|ZP_04054916.1| peptide deformylase [Porphyromonas uenonis 60-3] gi|228308381|gb|EEK17219.1| peptide deformylase [Porphyromonas uenonis 60-3] Length = 188 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 5/170 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P+ ++ P+LR +S I ++ LI +M + MY +DGIGLAA QIG RL VID Sbjct: 6 PIYLYGQPVLRNMSEDITPDYPNLSELIADMWQTMYESDGIGLAAPQIGRNIRLQVIDAT 65 Query: 63 -LQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 L+D + V IN + + S+D EGCLS+P V R I V YM+ Sbjct: 66 PLEDEYPECATLKLVMINAHMQSLSEDTCSEAEGCLSLPGINERVVRPKSIVVDYMNEQF 125 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q + G A +QHE DHL+G LF+DH+S +++ +I KK+ +V R Sbjct: 126 EPQRLELSGYAARVVQHEYDHLDGKLFVDHISAMRKRLIKKKLQHIVDGR 175 >gi|312127907|ref|YP_003992781.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108] gi|311777926|gb|ADQ07412.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108] Length = 166 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 99/165 (60%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+I + +V EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGA-----IELVNPEIEQV-EGSAVDVEGCLSVPNVWGEVERPQKVVVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164 + A+GLLA + HE+DHL+GILF+D + R + + I ++ S+ Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSR 159 >gi|218130013|ref|ZP_03458817.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697] gi|317476772|ref|ZP_07936015.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA] gi|217987816|gb|EEC54142.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697] gi|316906947|gb|EFV28658.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA] Length = 184 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/168 (38%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+VV+DL Sbjct: 4 PVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVVDLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ K +IN I+ S + +EGCLS+P VKR I V+Y+D + Sbjct: 64 VLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLDEDL 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +FIDHLS L++ MI K++ +++ Sbjct: 124 VEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNAMLK 171 >gi|288925815|ref|ZP_06419746.1| peptide deformylase [Prevotella buccae D17] gi|288337470|gb|EFC75825.1| peptide deformylase [Prevotella buccae D17] Length = 186 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 7/170 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ P+LR+V+ I + LI +M E + +++G+GLAA QIG R+ VIDL Sbjct: 4 PIYIYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVIDLD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D K+ +INP I+ F ++ +EGCLSIP +V R I V+Y D Sbjct: 64 VLSDDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKYRDT 123 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + +G LA +QHE DHL+G +F+D +S L++ +I K+ +++ Sbjct: 124 DFVEHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILK 173 >gi|255970684|ref|ZP_05421270.1| formylmethionine deformylase [Enterococcus faecalis T1] gi|256618121|ref|ZP_05474967.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200] gi|256761051|ref|ZP_05501631.1| formylmethionine deformylase [Enterococcus faecalis T3] gi|256854795|ref|ZP_05560159.1| formylmethionine deformylase [Enterococcus faecalis T8] gi|257420429|ref|ZP_05597419.1| formylmethionine deformylase [Enterococcus faecalis X98] gi|255961702|gb|EET94178.1| formylmethionine deformylase [Enterococcus faecalis T1] gi|256597648|gb|EEU16824.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200] gi|256682302|gb|EEU21997.1| formylmethionine deformylase [Enterococcus faecalis T3] gi|256710355|gb|EEU25399.1| formylmethionine deformylase [Enterococcus faecalis T8] gi|257162253|gb|EEU92213.1| formylmethionine deformylase [Enterococcus faecalis X98] Length = 169 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 90/150 (60%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ V Sbjct: 5 LMRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I++ + + INP II S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 65 IEIDEESGH---FELINPVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 121 EMEVTAYGYLARAFQHEIDHLNGELFIDKM 150 >gi|254720523|ref|ZP_05182334.1| peptide deformylase [Brucella sp. 83/13] gi|265985555|ref|ZP_06098290.1| peptide deformylase-like protein [Brucella sp. 83/13] gi|306838109|ref|ZP_07470966.1| peptide deformylase [Brucella sp. NF 2653] gi|264664147|gb|EEZ34408.1| peptide deformylase-like protein [Brucella sp. 83/13] gi|306406846|gb|EFM63068.1| peptide deformylase [Brucella sp. NF 2653] Length = 164 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 98/165 (59%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + D+ L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L P +INP+I+ ++ +QEG +S+P +V+R A I + Y D + Sbjct: 61 LELD---RTTGPKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLCYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162 >gi|163841093|ref|YP_001625498.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] gi|162954569|gb|ABY24084.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] Length = 189 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/147 (40%), Positives = 80/147 (54%), Gaps = 11/147 (7%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV---LYRLVVIDLQ 64 I DP+LR V+ P+ + ++ LI +M E M DG+GLAA Q+GV ++ + +L Sbjct: 8 IMGDPVLRTVAEPVTEFGPELAKLIADMFETMDDVDGVGLAAPQVGVSKQIFTYRIGELS 67 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 H INP + + EGCLS+P V+R VR MD N +I Sbjct: 68 GH--------VINPVLENGEANQPSGAEGCLSVPGLGYAVERKQTSRVRGMDMNGNPVLI 119 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 ADG+LA C+QHE DHLNG LFID L+ Sbjct: 120 EADGMLARCMQHETDHLNGKLFIDRLT 146 >gi|317490610|ref|ZP_07949082.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|316910286|gb|EFV31923.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] Length = 180 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 81/150 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+PIL ++ P + + + L M + MY DG G+AA Q+GV RLVVID Sbjct: 4 IVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVIDCDQ 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++P+V +NP ++ D V EGCLS P + R F VRY D + + I Sbjct: 64 DEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEEWEIE 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +GLL CLQHELDHL+GI + + R Sbjct: 124 GEGLLGRCLQHELDHLDGITMFERCDPMTR 153 >gi|317472516|ref|ZP_07931837.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] gi|316900030|gb|EFV22023.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] Length = 157 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 5/147 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ S+ I+++ S M LI++M + MY G+GLAA Q+G+L RLVVID + Sbjct: 11 DEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVVID----TYEG 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INPKI+ D + EGCLS+P A VKR + +D + + +GLL Sbjct: 67 QPLVLINPKIVE-KDGEQIGDEGCLSLPGKVAVVKRPNHVVCEALDQDMNPIRVEGEGLL 125 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDM 157 A + HELDHL+G+L+ D RD+ Sbjct: 126 ARAICHELDHLDGVLYPDVAEEPVRDV 152 >gi|300087750|ref|YP_003758272.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527483|gb|ADJ25951.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 174 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 11/163 (6%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 I PDP+LR S+ I ++ I L+D+M+E M + +G GLAA Q+GV R +VI + + Sbjct: 8 IHPDPVLRIKSKKIPVVDRSIRELVDDMVETMQTNNGCGLAAPQVGVSLRCIVIGMPE-- 65 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 ++P INP+I+ + V +E CLSIP A+V RS + V+ + + + I Sbjct: 66 --QDPFTIINPEIVKRRGE-RVIEEACLSIPGVGAEVTRSLEVIVKGIGRDGKPLRIKGH 122 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 LLA L+HE+DHLNG+LFID + +K+ K+ Q+ D Sbjct: 123 DLLAQALEHEIDHLNGLLFIDRVDS------QEKLYKITQISD 159 >gi|313207141|ref|YP_004046318.1| peptide deformylase [Riemerella anatipestifer DSM 15868] gi|312446457|gb|ADQ82812.1| peptide deformylase [Riemerella anatipestifer DSM 15868] gi|315022461|gb|EFT35488.1| peptide deformylase [Riemerella anatipestifer RA-YM] gi|325335421|gb|ADZ11695.1| N-formylmethionyl-tRNA deformylase [Riemerella anatipestifer RA-GD] Length = 190 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 90/159 (56%), Gaps = 13/159 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + DP+LR+ + I ++ LI NM E M GIGLAA QIG+ RL ++D++ Sbjct: 4 PIRAYGDPVLRKKGQDITPDYPNLKELIQNMFETMEGAHGIGLAAPQIGLDIRLFIVDVR 63 Query: 65 DHAHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A ++ + VFIN KI+ + + + EGCLSIP+ R DVKR IT+ Sbjct: 64 PLAEDEDYLDIADELKDFRKVFINAKILEETGEEWKFNEGCLSIPEVREDVKRKDTITIE 123 Query: 114 YMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y D + +H Y+D + A +QHE DH+ GILF D LS Sbjct: 124 YYDEDFKKHTETYSD-IRARVIQHEYDHIEGILFTDKLS 161 >gi|254695522|ref|ZP_05157350.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|261215912|ref|ZP_05930193.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str. Tulya] gi|260917519|gb|EEX84380.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str. Tulya] Length = 164 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 99/165 (60%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +Q G +S+P +V+R A I +RY D + Sbjct: 61 LELDRAA---GPKIYINPEIVWACEEKIRHQVGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162 >gi|229826165|ref|ZP_04452234.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC 49176] gi|229789035|gb|EEP25149.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC 49176] Length = 175 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 3/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +R I++ + I LID+MLE MY DG+GLAA Q+GVL RL V Sbjct: 1 MALRNIRIVGDEILNKRAREIKENSDKIQTLIDDMLETMYDADGVGLAAPQVGVLKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R P VFINP+I+ S + EGCLS+P V R ++ ++ ++ + Sbjct: 61 IDCSE--DRNEPFVFINPEILETSGE-QTGSEGCLSVPGKAGIVTRPEYVKMKALNREFE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 II +GL A + HE +HL+G ++ + + Sbjct: 118 EYIIEGEGLFARAMVHENEHLDGHIYTEKV 147 >gi|219847779|ref|YP_002462212.1| peptide deformylase [Chloroflexus aggregans DSM 9485] gi|254767576|sp|B8G5R5|DEF_CHLAD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219542038|gb|ACL23776.1| peptide deformylase [Chloroflexus aggregans DSM 9485] Length = 188 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 99/171 (57%), Gaps = 14/171 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-- 70 IL+ RP++ + ++ L+ +M E M++ +G+GLAA QIG+ +L +I++ + Sbjct: 17 ILKMQCRPVKLPDRNLKQLVADMFETMHAANGVGLAAPQIGIPIQLCIIEIPPEYEEQPD 76 Query: 71 ---------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ- 120 P V INP+I+ S + + EGCLS+P + V R ++TV + D + + Sbjct: 77 GSLIEVNPAEPYVLINPRIVKTSGEEIMRDEGCLSLPGWYGMVPRQTWVTVEFQDLSGKH 136 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK--RDMITKKMSKLVQLR 169 H++ ADGLL +QHE+DHL+GILF + + L RD+ ++ ++ V+ + Sbjct: 137 HRLRRADGLLGWAIQHEVDHLHGILFTERIRDLSTLRDITKEREAQPVEAK 187 >gi|259417291|ref|ZP_05741210.1| peptide deformylase [Silicibacter sp. TrichCH4B] gi|259346197|gb|EEW58011.1| peptide deformylase [Silicibacter sp. TrichCH4B] Length = 165 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 97/169 (57%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +I + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTTRTCLPWPDKRLRTAATEVSEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+I+ S + ++E ++P A +KR +TVR++ N Sbjct: 61 VD--GSTERGRAVRLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFL--NED 116 Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I D G+ AT +QH++DHLNG ++ D+LS++KRDM+ KK K + Sbjct: 117 GVIDRRDFVGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLIKKARKFAR 165 >gi|306820768|ref|ZP_07454393.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551158|gb|EFM39124.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 166 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 88/157 (56%), Gaps = 9/157 (5%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR-------- 57 L I DP+LR+VSR + +++ I LI++M++ M DG+GLAA Q+GVL R Sbjct: 6 LRIDGDPLLRKVSREVTELSDKIRLLIEDMMDTMTENDGVGLAAPQVGVLKRVIVVDVSD 65 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + L+D P+ INP II D V QEGCLS+P+ DVKR + I V+ + Sbjct: 66 VDPEVLKDENAPDEPIALINPVIIE-KDGEEVGQEGCLSVPNLTGDVKRPSRIVVKAKNE 124 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + + A A L HE+DHLNG+L+ID L+ Sbjct: 125 KFEDVVFEAKHFFARVLCHEIDHLNGVLYIDKAENLR 161 >gi|319760357|ref|YP_004124295.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF] gi|318039071|gb|ADV33621.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF] Length = 168 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 3/160 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR+ ++ + KI+ +I +M + MY+ GIGLAA Q+ + +++VIDL + Sbjct: 9 YPDKRLRKTAKFVSKISKHTKRIIFDMFDTMYAQQGIGLAATQVDIDQQIIVIDLYQNIT 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 ++ +VFINP II EGCLSIP + + RS I VR ++ + I A Sbjct: 69 QR--LVFINPIIIKKIGIIHTV-EGCLSIPKIKESIPRSKQIIVRSLNQDGNIFEITATD 125 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LL+ C+QHE+DHL G LFID+LS LK I KK+ K +L Sbjct: 126 LLSVCIQHEIDHLLGKLFIDYLSPLKIKRINKKIQKWTKL 165 >gi|99082418|ref|YP_614572.1| formylmethionine deformylase [Ruegeria sp. TM1040] gi|99038698|gb|ABF65310.1| formylmethionine deformylase [Ruegeria sp. TM1040] Length = 165 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +I + +M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTTRTCLPWPDKRLRTKAAEVTEITDEIRAIWVDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+I+ S + ++E ++P A +KR +TVR++ N Sbjct: 61 VD--GSSERGRAVRLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFL--NED 116 Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I D G+ AT +QH++DHLNG ++ DHLS++KRDM+ KK KL + Sbjct: 117 GVIDRRDFVGIEATSVQHQIDHLNGKMYFDHLSKVKRDMLVKKARKLAR 165 >gi|325831341|ref|ZP_08164595.1| peptide deformylase [Eggerthella sp. HGA1] gi|325486595|gb|EGC89043.1| peptide deformylase [Eggerthella sp. HGA1] Length = 183 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 81/150 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+PIL ++ P + + + L M + MY DG G+AA Q+GV RLVVID Sbjct: 7 IVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVIDCDQ 66 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++P+V +NP ++ D V EGCLS P + R F VRY D + + I Sbjct: 67 DEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEEWEIE 126 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +GLL CLQHELDHL+GI + + R Sbjct: 127 GEGLLGRCLQHELDHLDGITMFERCDPMTR 156 >gi|126699364|ref|YP_001088261.1| peptide deformylase 1 [Clostridium difficile 630] gi|254975393|ref|ZP_05271865.1| peptide deformylase 1 [Clostridium difficile QCD-66c26] gi|255092782|ref|ZP_05322260.1| peptide deformylase 1 [Clostridium difficile CIP 107932] gi|255100892|ref|ZP_05329869.1| peptide deformylase 1 [Clostridium difficile QCD-63q42] gi|255314522|ref|ZP_05356105.1| peptide deformylase 1 [Clostridium difficile QCD-76w55] gi|255517197|ref|ZP_05384873.1| peptide deformylase 1 [Clostridium difficile QCD-97b34] gi|255650303|ref|ZP_05397205.1| peptide deformylase 1 [Clostridium difficile QCD-37x79] gi|255655776|ref|ZP_05401185.1| peptide deformylase 1 [Clostridium difficile QCD-23m63] gi|260683417|ref|YP_003214702.1| peptide deformylase 1 [Clostridium difficile CD196] gi|260687013|ref|YP_003218146.1| peptide deformylase 1 [Clostridium difficile R20291] gi|296450989|ref|ZP_06892736.1| peptide deformylase 1 [Clostridium difficile NAP08] gi|296879045|ref|ZP_06903041.1| peptide deformylase 1 [Clostridium difficile NAP07] gi|306520272|ref|ZP_07406619.1| peptide deformylase [Clostridium difficile QCD-32g58] gi|115250801|emb|CAJ68625.1| Peptide deformylase 1 (PDF 1) (Polypeptide deformylase 1) [Clostridium difficile] gi|260209580|emb|CBA63212.1| peptide deformylase 1 [Clostridium difficile CD196] gi|260213029|emb|CBE04369.1| peptide deformylase 1 [Clostridium difficile R20291] gi|296260207|gb|EFH07055.1| peptide deformylase 1 [Clostridium difficile NAP08] gi|296429918|gb|EFH15769.1| peptide deformylase 1 [Clostridium difficile NAP07] Length = 151 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + F D ILR+ S+ +E +++ I ++++M E MY+T +G GLAA Q+GVL RLV Sbjct: 1 MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + + +NP+II + + EGCLS P+ +KR +TV+ ++ Sbjct: 61 VIDLGEGLIK-----LVNPEIIKQEGE-QIVVEGCLSFPEVWGKLKRPKKVTVQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I G +A CL HE+DHLNGI+F D + Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145 >gi|118443269|ref|YP_877731.1| peptide deformylase [Clostridium novyi NT] gi|118133725|gb|ABK60769.1| peptide deformylase [Clostridium novyi NT] Length = 158 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 13/165 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V + +LRR SR IEKI+ +++ LI ++ + +YS DG+GLAA QIGVL R + Sbjct: 1 MAIKNIVTADNQLLRRKSRRIEKIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+D +P++ +NPKI+ + EGCLS P Y V R + V M+ + Sbjct: 61 IDLRDG---NDPLILLNPKILKKIGKYE-DAEGCLSYPGYEGVVIRPRKVIVAGMNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A GL+A + HE DHL+G+L++D + KKM K+ Sbjct: 117 MVQYVATGLMARAICHETDHLDGVLYMD---------LAKKMYKI 152 >gi|293572654|ref|ZP_06683622.1| peptide deformylase [Enterococcus faecium E980] gi|291607240|gb|EFF36594.1| peptide deformylase [Enterococcus faecium E980] Length = 163 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 92/149 (61%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+R ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ +I Sbjct: 1 MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIALI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + INP+II + S+ EGCLSIP VKR+ +TVRY D + + Sbjct: 61 EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|255306782|ref|ZP_05350953.1| peptide deformylase 1 [Clostridium difficile ATCC 43255] Length = 151 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + F D ILR+ S+ +E +++ I ++++M E MY+T +G GLAA Q+GVL RLV Sbjct: 1 MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + + +NP+II + + EGCLS P+ +KR +TV+ ++ Sbjct: 61 VIDLGEGLIK-----LVNPEIIEQEGE-QIVVEGCLSFPEVWGKLKRPKKVTVQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I G +A CL HE+DHLNGI+F D + Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145 >gi|291547147|emb|CBL20255.1| peptide deformylase [Ruminococcus sp. SR1/5] Length = 157 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + SR ++K+ I LI +ML+ MY G+GLAA Q+G+L R+VV Sbjct: 1 MALRTIRVQGDSVLTKKSRTVDKMTPRIGELITDMLDTMYDAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S + EGCLS+P V R ++ V+ D N Sbjct: 61 IDVGE-----GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAFDVNMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 QI +GLLA HE+DHL+G ++ + Sbjct: 115 EQIYEGEGLLARAFCHEIDHLDGKMYTE 142 >gi|256845417|ref|ZP_05550875.1| peptide deformylase [Fusobacterium sp. 3_1_36A2] gi|256718976|gb|EEU32531.1| peptide deformylase [Fusobacterium sp. 3_1_36A2] Length = 174 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 99/159 (62%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ V D + Sbjct: 8 YGEDVLKQIAKEVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIFVCDDGNG 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 RK INP ++ +++ ++EGCLS+P V+R + ++Y++ N + A Sbjct: 68 VVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENGEEIEEIA 123 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + LA +QHE DHL+GILFI+ +S + + +I KK++ + Sbjct: 124 ENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANM 162 >gi|238916653|ref|YP_002930170.1| hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750] gi|238872013|gb|ACR71723.1| Hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750] Length = 171 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/143 (39%), Positives = 86/143 (60%), Gaps = 6/143 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D ILR ++ I ++ I LID+M + MY +G+GLAA Q+G+ RLVVID D Sbjct: 23 LGDDILRAKAKEITEMTPRIEELIDDMFDTMYEANGVGLAAPQVGIRKRLVVIDCGD--- 79 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +P+V INP ++ S + EGCLS+P +V R + V+ ++ N + I+ + Sbjct: 80 --DPIVLINPVVLETSGSQTGL-EGCLSVPGKTGEVTRPNYAKVKALNENMEEIIVEGEE 136 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA CL HE+DHL+GI+++D + Sbjct: 137 LLARCLLHEIDHLDGIMYVDKVE 159 >gi|167747883|ref|ZP_02420010.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662] gi|167652705|gb|EDR96834.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662] Length = 157 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 5/147 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ S+ I+++ S M LI++M + MY G+GLAA Q+G+L RLVVID + Sbjct: 11 DEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVVID----TYEG 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INPKI+ D + EGCLS+P A VKR + +D + + +GLL Sbjct: 67 QPLVLINPKIVE-KDGEQIGDEGCLSLPGKVAVVKRPNHVVCEALDRDMNPIRVEGEGLL 125 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDM 157 A + HELDHL+G+L+ D RD+ Sbjct: 126 ARAICHELDHLDGVLYPDVAEEPVRDV 152 >gi|219685342|ref|ZP_03540161.1| peptide deformylase [Borrelia garinii Far04] gi|219673115|gb|EED30135.1| peptide deformylase [Borrelia garinii Far04] Length = 165 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 3 MVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVRENR 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP II S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 63 MAR---PLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNGILFID+ R+K ++ M + Sbjct: 120 DSDFLARIIQHEMDHLNGILFIDYYEERIKNKLLKPYMRE 159 >gi|34762409|ref|ZP_00143410.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742081|ref|ZP_04572562.1| polypeptide deformylase [Fusobacterium sp. 4_1_13] gi|294785287|ref|ZP_06750575.1| peptide deformylase [Fusobacterium sp. 3_1_27] gi|27887934|gb|EAA25001.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429729|gb|EEO39941.1| polypeptide deformylase [Fusobacterium sp. 4_1_13] gi|294487001|gb|EFG34363.1| peptide deformylase [Fusobacterium sp. 3_1_27] Length = 174 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 99/159 (62%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ V D + Sbjct: 8 YGEDVLKQIAKKVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIFVCDDGNG 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 RK INP ++ +++ ++EGCLS+P V+R + ++Y++ N + A Sbjct: 68 VVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENGEEIEEIA 123 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + LA +QHE DHL+GILFI+ +S + + +I KK++ + Sbjct: 124 ENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANM 162 >gi|307264799|ref|ZP_07546361.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1] gi|306920057|gb|EFN50269.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1] Length = 159 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 91/143 (63%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L++ ++P+ +IN I+ ++++M + MY DG+GLAA QIGVL RLVVID+ + Sbjct: 11 DEVLKKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVVIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ + + V EGCLSIP +VKR + V+Y+D + + I + LL Sbjct: 66 GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGKEREIEGEDLL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A L HE+DHLNG+LFID R Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147 >gi|219684773|ref|ZP_03539715.1| peptide deformylase [Borrelia garinii PBr] gi|219671718|gb|EED28773.1| peptide deformylase [Borrelia garinii PBr] Length = 165 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 3 MVFYPNDLLRVKTKQIDSIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVRENR 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP II S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 63 MAK---PLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNGILFID+ R+K ++ M + Sbjct: 120 DSDFLARIIQHEMDHLNGILFIDYYEERIKNKLLKPYMRE 159 >gi|89070115|ref|ZP_01157445.1| peptide deformylase [Oceanicola granulosus HTCC2516] gi|89044336|gb|EAR50479.1| peptide deformylase [Oceanicola granulosus HTCC2516] Length = 162 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 93/163 (57%), Gaps = 2/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++P LR + P+ +++ + + D M+E M + G GLAA Q+G+ RL V+ Sbjct: 1 MSRPFVMWPHKALRTRAAPVAQVDDAVRAIWDEMVEAMEAMPGYGLAAPQLGIGLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D R + NP+++ S + ++E ++P A +KR +TVR+++ + Sbjct: 61 DAS--TARGKAVRLANPELLHASVELREHEEASPNLPGVGAALKRPRAVTVRFLNAAGET 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL AT +QH+LDHL+G ++ D LSR +R+M+ K+ K Sbjct: 119 EERDFVGLWATSVQHQLDHLDGRMYFDRLSRTRREMLLKRARK 161 >gi|222104825|ref|YP_002539314.1| peptide deformylase [Escherichia coli] gi|8571125|gb|AAF76758.1|AF218073_7 unknown [Escherichia coli] gi|221589252|gb|ACM18249.1| peptide deformylase [Escherichia coli] Length = 150 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 86/126 (68%), Gaps = 3/126 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++VID+ + + Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEKGIGLAATQVDIHQRIIVIDVSE--N 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125 Query: 129 LLATCL 134 LLA C+ Sbjct: 126 LLAICI 131 >gi|297181739|gb|ADI17920.1| N-formylmethionyl-tRNA deformylase [uncultured Desulfobacterales bacterium HF0200_07G10] Length = 174 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 100/168 (59%), Gaps = 5/168 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ 64 ++++PD L +VSRP+++ + DI + ++ E S G +G+AA Q+G R++++D+ Sbjct: 6 ILVYPDKRLTQVSRPVDEFSRDIKTFVKDLEETFRSYPGCVGIAAPQVGRFERIILVDVS 65 Query: 65 DHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 N +V INPKI ++ + S+ +EGCLS+PDY V+R+ I + ++ N Q Sbjct: 66 QKPQHVNHGFLVLINPKITSYEGN-SLGREGCLSVPDYTGKVERAKSIALEALNENGDKQ 124 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + G A +QHE+DHL+G LFID L +R+ + K++ L++ Sbjct: 125 ELKLSGYEARAVQHEIDHLDGKLFIDRLVG-RRNSLNKRIELSTDLKN 171 >gi|281423116|ref|ZP_06254029.1| peptide deformylase [Prevotella oris F0302] gi|281402452|gb|EFB33283.1| peptide deformylase [Prevotella oris F0302] Length = 187 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 7/170 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ P+LR+V++ I + LI +M E + +++GIGLAA QIG R+VVIDL Sbjct: 4 PIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVIDLD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D+ K FIN I+ F ++ +EGCLS+P V R I V+Y D Sbjct: 64 VLSDDYPEYKGLRKAFINAHILEFDEESPKETMEEGCLSLPGLSEKVTRPTRIHVKYQDE 123 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + DG LA +QHE DHL G +FID + L++ MI K+ +++ Sbjct: 124 DFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMK 173 >gi|257438995|ref|ZP_05614750.1| peptide deformylase [Faecalibacterium prausnitzii A2-165] gi|257198580|gb|EEU96864.1| peptide deformylase [Faecalibacterium prausnitzii A2-165] Length = 178 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G+L R+ V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRIFV 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P + F+NP+I+ S+D EGCLS P + V R + VR Sbjct: 61 VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D N + A+ LLA C+QHE DHL+GI ++ D K + Sbjct: 121 AQDRNGNWFELEAENLLARCIQHENDHLDGITIMESSEYFYEDTEEGKKA 170 >gi|328951365|ref|YP_004368700.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] gi|328451689|gb|AEB12590.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] Length = 197 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 15/178 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ DPILRR + P+E + I L +N+ E M+ G+GLAA Q+G+ RL V Sbjct: 9 PIRLYGDPILRRRALPVEAFDG-IPELAENLFETMFEAGGVGLAAPQVGISRRLFVAAEY 67 Query: 65 D-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITV 112 + K V +NP +IT+ + V EGCLS+P Y +V R + V Sbjct: 68 LDEEEEAEDTPLKSRVKQLYVMVNP-VITYREGHQVGTEGCLSLPGLYSDEVPRDLRVRV 126 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQLR 169 +Y D + +++ A+G LA +QHELDHL G LFID L +R I + ++L +++ Sbjct: 127 QYQDEYGEPKVLEAEGYLARVIQHELDHLEGKLFIDRLPPEARRAFINEHRAELAEMQ 184 >gi|224534861|ref|ZP_03675430.1| peptide deformylase [Borrelia spielmanii A14S] gi|224513801|gb|EEF84126.1| peptide deformylase [Borrelia spielmanii A14S] Length = 165 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 3 MVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISSGVGLAAPQVGLDLSLFVVRENK 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP I S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 63 MAK---PLVFINPLITETSYELNSYKEGCLSIPGVYYDLMRPKTIVVNFYDENGKSFTIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ R+K+ ++ M + Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEERIKKKLLKPYMKE 159 >gi|223994725|ref|XP_002287046.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335] gi|220978361|gb|EED96687.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335] Length = 180 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 6/165 (3%) Query: 9 FPDPILRRVSRPIEKI-----NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P P LR + I + S+I + M VMY+T+G GLAA Q+G+ RL+V + Sbjct: 8 YPHPALRAPNAEITEEELTGPGSEISRIAKEMFLVMYATNGAGLAAPQVGINKRLMVYNE 67 Query: 64 QDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + R ++ +NPKI+ FS + QEGCLS P+ DV+RS +I V + + Sbjct: 68 SGDSKRWMQEVIMVNPKIVEFSSATDIEQEGCLSFPEMGGDVQRSKWIKVEAQNLKGKKI 127 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G A QHE DHL+G++++D LS R + ++ +LV+ Sbjct: 128 KKKFTGWEARIFQHEYDHLDGVVYVDRLSEEGRKEVQGRLDELVE 172 >gi|329954514|ref|ZP_08295605.1| peptide deformylase [Bacteroides clarus YIT 12056] gi|328527482|gb|EGF54479.1| peptide deformylase [Bacteroides clarus YIT 12056] Length = 184 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+VV+DL Sbjct: 4 PVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVVDLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ K +IN I+ S + +EGCLS+P VKR I V+Y+D + Sbjct: 64 VLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLDEDL 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ Sbjct: 124 VEHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNAMLK 171 >gi|300861509|ref|ZP_07107593.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|312953219|ref|ZP_07772065.1| peptide deformylase [Enterococcus faecalis TX0102] gi|295114433|emb|CBL33070.1| peptide deformylase [Enterococcus sp. 7L76] gi|300848970|gb|EFK76723.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|310628836|gb|EFQ12119.1| peptide deformylase [Enterococcus faecalis TX0102] gi|315031809|gb|EFT43741.1| peptide deformylase [Enterococcus faecalis TX0017] gi|315152788|gb|EFT96804.1| peptide deformylase [Enterococcus faecalis TX0031] gi|315154709|gb|EFT98725.1| peptide deformylase [Enterococcus faecalis TX0043] gi|323479052|gb|ADX78491.1| peptide deformylase [Enterococcus faecalis 62] Length = 164 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 4/149 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 1 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + INP II S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 61 EIDEESGH---FELINPVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145 >gi|218132889|ref|ZP_03461693.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC 43243] gi|217991762|gb|EEC57766.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC 43243] Length = 159 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 83/141 (58%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+ ++ + ++ I LID+M + MY +G GLAA Q+G+ R+VVID D Sbjct: 14 DEILRKTAKEVTEMTPKIRELIDDMFDTMYEANGCGLAAPQVGIRKRIVVIDCGD----- 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +P+V INP I+ S + EGCLS+P V R + V+ D + I+ + LL Sbjct: 69 DPIVLINPVILETSGE-QTGSEGCLSVPGKCGTVTRPNYAKVKAFDEDMNEYIVEGEELL 127 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A CL HE+DHL+GI+++D + Sbjct: 128 ARCLCHEIDHLDGIMYVDKVE 148 >gi|315640287|ref|ZP_07895404.1| peptide deformylase [Enterococcus italicus DSM 15952] gi|315483949|gb|EFU74428.1| peptide deformylase [Enterococcus italicus DSM 15952] Length = 163 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 58/147 (39%), Positives = 92/147 (62%), Gaps = 5/147 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LR+ ++ I+++ +++ L+D+M E M + DG+G+AA QIG ++ V+ Sbjct: 1 MRYPIIIQPDEQLRKPNQEIQELTDELVYLLDDMYETMLAHDGVGIAAPQIGKNLQMAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ ++ + INP+II SV+ EGCLSIP V+R+ ITVRY D Sbjct: 61 EVDEN----DRFDLINPQIIDRKGK-SVFVEGCLSIPHVFGTVERAEEITVRYYDREGDE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 + A G LA +QHE+DHLNG+LF D Sbjct: 116 MEVTAYGYLARAIQHEIDHLNGVLFTD 142 >gi|313905223|ref|ZP_07838591.1| peptide deformylase [Eubacterium cellulosolvens 6] gi|313469976|gb|EFR65310.1| peptide deformylase [Eubacterium cellulosolvens 6] Length = 173 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 6/145 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+L +V +P+ K++ + L+ +M + MY G+GLAA Q+GVL R+ VID+ + Sbjct: 11 DPVLEKVCKPVAKMSLRMKILVKDMFDTMYDACGVGLAAPQVGVLRRIAVIDVDG----E 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +P VF+NP+II S + EGCLSIP V R ++ V+ D N + + A GLL Sbjct: 67 HPYVFVNPEIIEMSGE-QTGDEGCLSIPGMTGTVTRPDYVKVKAFDINMEPFELEATGLL 125 Query: 131 ATCLQHELDHLNGILFIDHL-SRLK 154 A HE +HL+G+L+ H+ RL+ Sbjct: 126 ARACCHEFEHLDGVLYTCHVQGRLR 150 >gi|159042736|ref|YP_001531530.1| peptide deformylase [Dinoroseobacter shibae DFL 12] gi|157910496|gb|ABV91929.1| peptide deformylase [Dinoroseobacter shibae DFL 12] Length = 168 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 6/168 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG----LAAVQIGVLYRLV 59 +P + +PD LR + P+ +I +I + D+M++ M + G+G LAA QIGV+ L Sbjct: 3 RPFLSWPDARLRTPAAPVAEITDEIRTVWDDMIDTMEAMPGMGPGAGLAAPQIGVMQALA 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + R + NP+++ S ++E ++P A + R +TVR++D N Sbjct: 63 VVDASEE--RGRAIRMANPQVLHASAQLRSHEEASPNLPGVFAKIDRPRAVTVRFLDANG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GL AT +QH++DHL G ++ D LS+ KRDM+ +K KL + Sbjct: 121 AVKEQDFVGLWATSVQHQIDHLAGRMYFDRLSKTKRDMLLRKARKLAR 168 >gi|189466358|ref|ZP_03015143.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM 17393] gi|189434622|gb|EDV03607.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM 17393] Length = 184 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV----LYRLVV 60 P+ ++ P+LR+V+ I ++ LI NM E M + +G+GLAA Q+G+ + + Sbjct: 4 PIYVYGQPVLRKVAEDIAPDYPNLKELIANMFETMDNAEGVGLAAPQVGLPVRVVVVDLD 63 Query: 61 IDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + +D+ K +INP I+ S + +EGCLS+P VKR I V YMD + Sbjct: 64 VLSEDYPEYKGFRKAYINPHILEVSGEEVSMEEGCLSLPGIHEAVKRGNKIHVTYMDEDM 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ Sbjct: 124 VEHDEIVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLK 171 >gi|116252298|ref|YP_768136.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841] gi|115256946|emb|CAK08040.1| putative peptide deformylase [Rhizobium leguminosarum bv. viciae 3841] Length = 164 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 88/161 (54%), Gaps = 3/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P++ +P P L+ V P+ +S + L +++L M + G+G+ A IGV R+ V++L Sbjct: 4 RPILRYPHPGLKTVCAPVTVFDSSLTALAEDLLATMRAAPGVGITAAHIGVFSRVTVLEL 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D A ++ NP I FS + + EG +S+P +V R I RY D Sbjct: 64 -DKA--DGVRLYFNPHITWFSKETMDHTEGSVSMPGATDEVTRPRAIRFRYQDAEGAVHE 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 121 DGAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161 >gi|254712281|ref|ZP_05174092.1| peptide deformylase [Brucella ceti M644/93/1] gi|254715352|ref|ZP_05177163.1| peptide deformylase [Brucella ceti M13/05/1] gi|261217080|ref|ZP_05931361.1| peptide deformylase-like protein [Brucella ceti M13/05/1] gi|261319950|ref|ZP_05959147.1| peptide deformylase-like protein [Brucella ceti M644/93/1] gi|260922169|gb|EEX88737.1| peptide deformylase-like protein [Brucella ceti M13/05/1] gi|261292640|gb|EEX96136.1| peptide deformylase-like protein [Brucella ceti M644/93/1] Length = 164 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 98/165 (59%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++I P+I+ ++ +QEG +S+P V+R A I +RY D + Sbjct: 61 LELDRAA---GPKIYIYPEIVWACEEKIRHQEGSVSMPGVVDKVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162 >gi|225018470|ref|ZP_03707662.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum DSM 5476] gi|224948779|gb|EEG29988.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum DSM 5476] Length = 150 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + L DPILR+ R +E+++ I L+D++ + MY+T+ G GLA Q+G+L RLV Sbjct: 1 MAIRNLRFTDDPILRKRCREVEQVDDKIRTLLDDLADTMYNTENGGGLATCQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + +NPKII S EGCLS P+ V R +TV +D N Sbjct: 61 VIDVG-----TGLLKLVNPKIIETSG-LQERLEGCLSFPNQWGKVLRPQKVTVEALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + II + LA CL HE+DHL+G++F+D + Sbjct: 115 EEIIITGEDQLAQCLCHEIDHLDGVVFVDKV 145 >gi|255527719|ref|ZP_05394575.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296187196|ref|ZP_06855593.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255508594|gb|EET84978.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296048231|gb|EFG87668.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 150 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 87/149 (58%), Gaps = 7/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + +F D ILR+ SR +E ++ I ++++M E MY+T+ G GLA Q+G+L RLV Sbjct: 1 MALRQIRLFGDEILRKKSREVEVVDDKIRQILNDMAETMYNTENGGGLAGPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D+ + +NPKII V EGCLS P+ +KR A + V+ ++ N Sbjct: 61 VMDMGGGLIK-----LVNPKIIEQEGTQEVI-EGCLSSPNTWGKLKRPAKVKVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + I+ G LA C HE+DHL GILF D Sbjct: 115 EEIILTGTGSLAKCFCHEIDHLEGILFTD 143 >gi|145345192|ref|XP_001417104.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901] gi|144577330|gb|ABO95397.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901] Length = 240 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 2/166 (1%) Query: 4 KPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +PL I +P LR + P+E + ++ L M ++MY T G GLAA Q+GV YR++V Sbjct: 64 EPLAIAKYPAKCLRAKNAPVETFDKNLERLSKAMFKIMYETVGCGLAAPQVGVNYRMMVY 123 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + +V NP+I+ FS + +++EGCLS P ADV+R + + + + Sbjct: 124 NEAGEPGQGREVVLCNPEIVKFSKEKDLFEEGCLSFPKMYADVERPIGVQIEAQNLKGKK 183 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G A QHE DHL+G+L+ D +S R + + V+ Sbjct: 184 FKMTLEGFEARVFQHEYDHLDGVLYHDRMSPEVRASVQSTLDGFVE 229 >gi|307298449|ref|ZP_07578252.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915614|gb|EFN45998.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2] Length = 163 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 5/157 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 +PILR VS +E + ++ ++ + + MY DG+GLAA Q+ + RL V D D Sbjct: 8 NPILRDVSEKVEVFDDELRQFVNELSKTMYVEDGVGLAAPQVAISRRLFVYDPGDGLR-- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 V +NP+I+ SD+ +EGCLSIP ADV R A + +RY D + Sbjct: 66 ---VVVNPEILFRSDEKVKIEEGCLSIPGIYADVVRPASVRIRYQDEYGHYHEDDLTDYP 122 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A +QHE DHL+GILF+D+LS KR ++ K+ ++++ Sbjct: 123 ARIVQHETDHLDGILFVDYLSSAKRAILKPKLDQIIK 159 >gi|126733796|ref|ZP_01749543.1| Peptide deformylase [Roseobacter sp. CCS2] gi|126716662|gb|EBA13526.1| Peptide deformylase [Roseobacter sp. CCS2] Length = 153 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 2/136 (1%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+L + P+E ++ + L+ +M E MY G GLAA Q+GV R+ V+D Sbjct: 11 DPVLLETAAPVEAFDASLATLVRDMFETMYDAPGRGLAAPQVGVSRRVFVVDTTWKEADP 70 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQHQIIYADGL 129 PM+F+NP+I +++ ++ E CLSIPD DV R ++ +++ D + A H+ + D + Sbjct: 71 APMIFVNPQITAHAEEEALGTEACLSIPDQSFDVSRPVWVALKWQDLDGAWHEGRFTD-V 129 Query: 130 LATCLQHELDHLNGIL 145 A C+ HE DHL G+L Sbjct: 130 DAVCICHEFDHLEGLL 145 >gi|328947001|ref|YP_004364338.1| peptide deformylase [Treponema succinifaciens DSM 2489] gi|328447325|gb|AEB13041.1| Peptide deformylase [Treponema succinifaciens DSM 2489] Length = 192 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 59/142 (41%), Positives = 86/142 (60%), Gaps = 7/142 (4%) Query: 11 DPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + +LR+ P+E ++N ++ ++ M E M S DG+GLAA Q+G+ R V+ D+ Sbjct: 8 EDVLRQKCVPVESNEVNDELRATLNEMFETMISADGVGLAAPQVGISKRFFVVISDDNVR 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII-YAD 127 R VFINP+II S + S Y+EGCLS+P + R I+V +D N + ++ D Sbjct: 68 R----VFINPEIIKTSAENSEYEEGCLSLPGVSEKIVRPVKISVSAIDENGKRFVLDDVD 123 Query: 128 GLLATCLQHELDHLNGILFIDH 149 GLLA +QHE DHLNGIL+ID Sbjct: 124 GLLARIIQHENDHLNGILYIDR 145 >gi|302346308|ref|YP_003814606.1| peptide deformylase [Prevotella melaninogenica ATCC 25845] gi|302150701|gb|ADK96962.1| peptide deformylase [Prevotella melaninogenica ATCC 25845] Length = 186 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 93/174 (53%), Gaps = 16/174 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61 P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VV+ Sbjct: 4 PIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVVDLD 63 Query: 62 -------DLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113 + +D+ H FIN I+ + D + +EGCLS+P V R+ + V+ Sbjct: 64 VLSDTFPEYKDYRH-----AFINGHILEYDDSETETLEEGCLSLPGVHESVTRAKRVYVK 118 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + D N + DG LA +QHE DHL G +F D LS ++ MIT K+ L+Q Sbjct: 119 WYDENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMITSKLKALLQ 172 >gi|261880357|ref|ZP_06006784.1| peptide deformylase [Prevotella bergensis DSM 17361] gi|270332901|gb|EFA43687.1| peptide deformylase [Prevotella bergensis DSM 17361] Length = 187 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 100/171 (58%), Gaps = 9/171 (5%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ + P+LR+V++ I + LID+M E M ++ G+GLAA QIG R+VVI+L Sbjct: 4 PIYTYGHPVLRKVAQDIPTDYPGLSQLIDDMFETMDASSGVGLAAPQIGKSVRVVVINLD 63 Query: 64 ---QDHAHRKN-PMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +D+ + +INP II S+ S+ +EGCLS+P V R + I V+Y+D Sbjct: 64 VLKEDYPEYADFRHAYINPHIIEVDKKSEKVSM-EEGCLSVPGLSEKVVRYSRIRVQYLD 122 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + +G LA +QHE DHL G++++D ++ L++ +I K+ ++Q Sbjct: 123 EELQPHDEWVEGYLARVMQHEFDHLEGVMYVDRITPLRKQLIRNKLKGIMQ 173 >gi|42543585|pdb|1RQC|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543586|pdb|1RQC|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543587|pdb|1RQC|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543588|pdb|1RQC|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543589|pdb|1RQC|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543590|pdb|1RQC|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543591|pdb|1RQC|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543592|pdb|1RQC|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543593|pdb|1RQC|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543594|pdb|1RQC|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design Length = 185 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V +PDPILRR S + + ++ ++ ++ Y + GIGL+A Q+ + R++V + L Sbjct: 5 IVKYPDPILRRRSEEVTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNALY 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +N +FINP I+ S EGCLS P V+R + +++ Y D N + Sbjct: 65 EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID +++ + + K+++L++ Sbjct: 125 ILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 167 >gi|114770092|ref|ZP_01447630.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255] gi|114548929|gb|EAU51812.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255] Length = 169 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + +PD L I I + +M + MY+ GIGLAA QIG++ L V Sbjct: 1 MAIKKFIRYPDKRLSVKCELISSITDKDHEVWKDMFDSMYNMPGIGLAACQIGIMRSLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + P NPKI+ S + QEG ++P A++KR +TVRY+D N Sbjct: 61 VDVGDG--KVEPFEMANPKILYSSGVYIENQEGSPNLPGVWANIKRPRAVTVRYIDKNGN 118 Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 I D GL A +QH++DHLNG +F +HLS KR M+ K KL Sbjct: 119 Q--IERDFVGLWAVSVQHQIDHLNGKMFFEHLSSTKRKMLINKSQKL 163 >gi|254436758|ref|ZP_05050252.1| peptide deformylase [Octadecabacter antarcticus 307] gi|198252204|gb|EDY76518.1| peptide deformylase [Octadecabacter antarcticus 307] Length = 165 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +P ILR + + +I DI L D M++ M + G+GLAA Q+GV RL V Sbjct: 1 MPRRQFIPWPAKILRTPAAEVPEITDDICALWDEMIDAMDAMPGVGLAAPQLGVSLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R + NP I+ S + +++E ++ A ++R +TVR+M+ Sbjct: 61 VDASDK--RGQAIRMANPIILHASHELRLHEEASPNLVGMSASLERPRAVTVRFMNEAGM 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL+G ++ D LSR KRDM+ KK KL Sbjct: 119 YDRQDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163 >gi|56698049|ref|YP_168420.1| peptide deformylase [Ruegeria pomeroyi DSS-3] gi|56679786|gb|AAV96452.1| peptide deformylase [Ruegeria pomeroyi DSS-3] Length = 165 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 95/159 (59%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR + + +I +I + +M++ M + G+GLAA QIGV+ RL V+D + Sbjct: 9 WPDKHLRTRAAEVSEITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAVVD--GSSE 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127 R + NP+I+ S + + E ++P A +KR +TVR++ N Q Q+ D Sbjct: 67 RGRAVRLANPEILHASIELREHDEASPNLPGVSAKLKRPRAVTVRFL--NEQGQVDRRDF 124 Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K KL Sbjct: 125 VGIEATSVQHQIDHLNGRMYFDNLSKVKRDMLLRKARKL 163 >gi|310829317|ref|YP_003961674.1| peptide deformylase 1 [Eubacterium limosum KIST612] gi|308741051|gb|ADO38711.1| peptide deformylase 1 [Eubacterium limosum KIST612] Length = 151 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 81/143 (56%), Gaps = 7/143 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVVIDLQDHA 67 FPD IL + RP+E I+ + LI +M E MY G LAA Q+GVL R+VVID+ + Sbjct: 9 FPDDILHKKCRPVETIDKRTLELIKDMTETMYQLPNCGGLAANQVGVLKRVVVIDVGEGL 68 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 ++ +NPKII ++ + EGC+S PD VKR + V Y + AD Sbjct: 69 YQ-----LVNPKIIE-AEGERIVVEGCMSSPDVWGKVKRPERVVVEYTTPEGEVLQKEAD 122 Query: 128 GLLATCLQHELDHLNGILFIDHL 150 GLLA C HELDHL+GI F D + Sbjct: 123 GLLAKCFCHELDHLDGIFFTDKV 145 >gi|218259650|ref|ZP_03475313.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii DSM 18315] gi|218224966|gb|EEC97616.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii DSM 18315] Length = 185 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 5/168 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR+ + + D+ L+ NM E MY+ DG+GLAA Q+G+ RL+VID Sbjct: 4 PVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVIDAD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D K INP + S++ +EGCLS+P V RS + V+Y+D + Sbjct: 64 VMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSVKVRVKYLDEDL 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G A +QHE +HL G +FID++S ++R + K++ +++ Sbjct: 124 KEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIK 171 >gi|254449483|ref|ZP_05062920.1| peptide deformylase [Octadecabacter antarcticus 238] gi|198263889|gb|EDY88159.1| peptide deformylase [Octadecabacter antarcticus 238] Length = 144 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 73/125 (58%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 + D++ LID++ + MY G GLAA QIGV R+ V+D+ ++P FINP+I + Sbjct: 5 DPDLVGLIDDLFDTMYHAKGRGLAAPQIGVTKRVFVVDVTWKEGTRDPRAFINPQITETA 64 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 D + E CLSIPD V R I +R+ + + DG+LA C+QHELDHLNG Sbjct: 65 GDMLIMNEQCLSIPDIPMPVARPERIQLRWTRRDGGLETAVFDGILARCIQHELDHLNGT 124 Query: 145 LFIDH 149 + DH Sbjct: 125 VIFDH 129 >gi|126726108|ref|ZP_01741950.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] gi|126705312|gb|EBA04403.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] Length = 165 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 3/162 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P + +PD LR + + I+ +I + D+M++ M + G+GLAA QIGV RL V+D Sbjct: 3 RPTIPWPDQCLRSKANTVGDISDEIRAIWDDMIDTMEAMPGVGLAAPQIGVSLRLCVVDA 62 Query: 64 QDHAHRKNPMVFINPKIITF-SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D R + +P + D+ ++E ++P A + R A +TV Y D + Sbjct: 63 SDE--RGQTIRMADPDFVGAQGDELRDHEEASPNLPGVSAKITRPAKVTVEYTDDKGERV 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +GL AT +QH+LDHLNG ++ D+LS+ RDM+ ++ K Sbjct: 121 RKTLEGLWATSVQHQLDHLNGRMYFDNLSKTNRDMLLRRAKK 162 >gi|289422300|ref|ZP_06424150.1| peptide deformylase [Peptostreptococcus anaerobius 653-L] gi|289157245|gb|EFD05860.1| peptide deformylase [Peptostreptococcus anaerobius 653-L] Length = 149 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DP+L + ++ + N + L+D+M + MY+ DG+GLAA Q+G+L R VV Sbjct: 1 MAIRNVVKMGDPVLNKKAKKVVDFNEKLHTLLDDMADTMYNEDGVGLAAPQVGILRRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + INP+II + + EGCLS+ DY A+V R ++ V+ D N + Sbjct: 61 VDIG-----TGLIELINPQIIAQEGEQTDV-EGCLSVVDYVAEVTRPNYVKVKAQDRNGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I +GL+A HELDHL GILF++ + + Sbjct: 115 DFEIEGEGLMARAFCHELDHLEGILFVERVEK 146 >gi|297617045|ref|YP_003702204.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680] gi|297144882|gb|ADI01639.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680] Length = 153 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 6/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ PDP+LR + P+ N ++ L++NM + +Y +G+GLAA QIGVL R+VV Sbjct: 1 MAAYQIVVVPDPVLREKALPVTSFNQGLIRLLENMKDSLYEAEGVGLAAPQIGVLRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D + INP+I+ + + + CLSIP+ R VKR+ + V ++ + Sbjct: 61 FDAGDGL-----VELINPRILEEEGEEAGIEG-CLSIPNTRGLVKRAKRVVVEALNRYGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 + I +GL+A +QHE+DHL+GILF D Sbjct: 115 NIRIEGEGLVARVIQHEIDHLDGILFTDR 143 >gi|218188726|gb|EEC71153.1| hypothetical protein OsI_02992 [Oryza sativa Indica Group] Length = 997 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 79/146 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 797 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 856 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP + S VY+E CLS P A+V R + + D + Sbjct: 857 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 916 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 GL A QHE DHL GILF D +S Sbjct: 917 LSGLSARVFQHEFDHLQGILFFDRMS 942 >gi|160893328|ref|ZP_02074115.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50] gi|156865020|gb|EDO58451.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50] Length = 153 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D +LR+ +P+ ++ + LID+M + MY +G+GLAA Q+G++ R+VV Sbjct: 1 MATRKIRIDGDSVLRKKCKPVTEMTPRLSQLIDDMFDTMYEANGVGLAAPQVGIVKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D ++P+ INP+II S + EGCLS+P V R + + +D + Sbjct: 61 IDIGD----EHPLTLINPEIIETSGE-QTGDEGCLSLPGKVGQVTRPMHVVCKALDRDMN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA + HE DHL GIL+ D + Sbjct: 116 EITVTGEGLLARAICHETDHLEGILYKDKVE 146 >gi|150018308|ref|YP_001310562.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] gi|149904773|gb|ABR35606.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] Length = 150 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + +F D +LR+ S+ +E ++ I ++D+M+E MY+T+ G GLAA QIG+L RLV Sbjct: 1 MALRKIRLFGDEVLRKKSKEVEVVDEKIRQILDDMVETMYNTENGGGLAAPQIGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLS P + R +TV+ +D N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGSQEVI-EGCLSNPHVFGRLLRPEKVTVQALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 KEIILTGTGDLAKCFCHEIDHLEGILFTDFVTE 147 >gi|164687803|ref|ZP_02211831.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM 16795] gi|164603078|gb|EDQ96543.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM 16795] Length = 157 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 91/150 (60%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +++IN I+ L+D+M + MY DG+GLAA Q+G+L R+VV Sbjct: 12 MALRQIVKIGEPVLRKKSKVVKEINDRIIELLDDMADTMYEADGVGLAAPQVGILKRVVV 71 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + INP+II ++ + EGCLS+P DV R + VR + + Sbjct: 72 IDIGDGL-----IELINPEIIETEGEY-LDNEGCLSVPGECGDVLRPYRVKVRAQNRFGE 125 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 I + LLA HE+DHL+GIL++D + Sbjct: 126 TVEIEGEELLARAFCHEIDHLDGILYVDKV 155 >gi|121998191|ref|YP_001002978.1| peptide deformylase [Halorhodospira halophila SL1] gi|121589596|gb|ABM62176.1| peptide deformylase [Halorhodospira halophila SL1] Length = 162 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 4/146 (2%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PDP LR+ S P+E+ + + L+D+M+E M++ IGLAA Q+ V R+VV + Sbjct: 10 PDPRLRQPSAPVERFDQALCELVDDMIETMHARSAIGLAAPQVDVRQRIVVCCTEPA--- 66 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + P VFINP+I T S +E CLS+P + V+R ++VR D + + L Sbjct: 67 QAPRVFINPEI-TGSSLPGYIEESCLSVPGQQGLVRRPTRVSVRAQDTAGERFHCKLENL 125 Query: 130 LATCLQHELDHLNGILFIDHLSRLKR 155 A CL HE+DHL+G LFID L KR Sbjct: 126 DAVCLHHEIDHLDGTLFIDRLPFWKR 151 >gi|222618921|gb|EEE55053.1| hypothetical protein OsJ_02752 [Oryza sativa Japonica Group] Length = 260 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 79/146 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 60 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 119 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP + S VY+E CLS P A+V R + + D + Sbjct: 120 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 179 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 GL A QHE DHL GILF D +S Sbjct: 180 LSGLSARVFQHEFDHLQGILFFDRMS 205 >gi|218295865|ref|ZP_03496645.1| peptide deformylase [Thermus aquaticus Y51MC23] gi|218243603|gb|EED10131.1| peptide deformylase [Thermus aquaticus Y51MC23] Length = 190 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61 P+ ++ DP+LR+ +RP++ S + L ++MLE M+ G+GLAA QIG+ RL V Sbjct: 4 PIRLYGDPVLRKKARPVQDF-SGLKKLAEDMLETMWEARGVGLAAPQIGLSQRLFVAVEY 62 Query: 62 -DLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVR 113 D D R + V +NP +IT + EGCLS+P Y +V R+ I V Sbjct: 63 ADEPDEEERPLRDLVRQVYVVVNP-VITHREGLVEGLEGCLSLPGLYSEEVPRAERIRVE 121 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + D + + + +G +A QHE+DHL G+LF + L + KR+ +K Sbjct: 122 FQDEEGRRRTLELEGYMARVFQHEIDHLEGVLFFERLPKPKREAFLEK 169 >gi|294102012|ref|YP_003553870.1| peptide deformylase [Aminobacterium colombiense DSM 12261] gi|293616992|gb|ADE57146.1| peptide deformylase [Aminobacterium colombiense DSM 12261] Length = 164 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 6/156 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PDP+LR+ + I+ +S +M+LI+ M +M +DG+GLAA Q+GV +L ++ + + Sbjct: 9 YPDPVLRKETEAIDLFDSKLMDLIEEMKVIMLESDGVGLAAPQVGVSKKLAIVYYDETLY 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V INP I+ +D V +EGCLS P +V R + + + + + I A+ Sbjct: 69 -----VLINP-ILLKADGEQVSEEGCLSFPGIFGNVLRPRHVVIEAYNEHGEKLTIEAED 122 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LA HE+DHL G L IDH S LK+++I K+M + Sbjct: 123 FLARAFLHEMDHLEGRLLIDHFSPLKKNIIRKRMRQ 158 >gi|307109178|gb|EFN57416.1| hypothetical protein CHLNCDRAFT_17300 [Chlorella variabilis] Length = 169 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 2/151 (1%) Query: 3 KKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + PL + +PDP LR + I + + L + M EVMY DG+GLAA Q+GV RL+V Sbjct: 8 QSPLAVLRYPDPRLRAPNARIGAFDDSLRRLAEEMFEVMYEDDGVGLAAPQVGVNVRLMV 67 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + +V +NP+II ++++EGCLS P+ ADV+R + + V+ D + + Sbjct: 68 FNEAGEKGAGDEIVLVNPQIINQGKARNMFEEGCLSFPNIYADVERPSKVKVKAQDLSGK 127 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + G A QHE DHL+G LF D ++ Sbjct: 128 KFTVSLIGFPARIFQHEYDHLDGRLFHDRMA 158 >gi|114766695|ref|ZP_01445634.1| N-formylmethionyl tRNA deformylase [Pelagibaca bermudensis HTCC2601] gi|114541085|gb|EAU44140.1| N-formylmethionyl tRNA deformylase [Roseovarius sp. HTCC2601] Length = 165 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 5/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++++PDP L++ P ++ + + L+ +MLE MY G GLAA Q+GVL R+ Sbjct: 1 MALREILLWPDPKLKQ---PCAEVGDPAAVSELVTDMLETMYDAPGRGLAAPQVGVLKRV 57 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 V+D P+V I+P+I+ SD+ + EGCLSIP A+V+R ++ + Y D N Sbjct: 58 FVMDAGWKDGDMTPVVCIDPQILAVSDETAAGDEGCLSIPGVTANVRRPVWVRMAYTDLN 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Q +G A QHE DHL+G++ D L Sbjct: 118 GDRQERRFEGAEAIVAQHEYDHLDGLVHFDRL 149 >gi|158321369|ref|YP_001513876.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] gi|158141568|gb|ABW19880.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] Length = 150 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 7/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + + DPILR+ S+ +E ++ I ++++M E MY T+ G GLA QIG+L RLV Sbjct: 1 MALREIRLMEDPILRKKSKKVEVVDDKIRQILEDMAETMYHTENGGGLAGPQIGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + M +NP+I+ +V EGCLSIP+ + R A + V ++ Sbjct: 61 VIDMG-----QGLMKLVNPRIVKEEGTQTVI-EGCLSIPNQFGKLARPAKVIVEALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + I A G LA C HE+DHLNGILF D Sbjct: 115 EEITITATGNLAKCFCHEIDHLNGILFTD 143 >gi|255525653|ref|ZP_05392586.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296185413|ref|ZP_06853823.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255510639|gb|EET86946.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296050247|gb|EFG89671.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 151 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 89/142 (62%), Gaps = 6/142 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ SR +E I+ I+ L+D+M E MY DG+GLA Q+G+L R+VVID+ + Sbjct: 9 YGDDLLRKKSRKVENIDDRIVTLLDDMAETMYDADGVGLAGPQVGILKRVVVIDVGEGI- 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + INP+II+ + + +EGCLS+P + V+R + V+ ++ + I+ + Sbjct: 68 ----LKLINPEIISTEGSY-IDEEGCLSVPGEQGKVERPYKVKVKALNEKGEEIIVEGEE 122 Query: 129 LLATCLQHELDHLNGILFIDHL 150 LLA L HE+DHL GILF+D + Sbjct: 123 LLARALCHEIDHLEGILFVDKI 144 >gi|283797831|ref|ZP_06346984.1| peptide deformylase [Clostridium sp. M62/1] gi|291074519|gb|EFE11883.1| peptide deformylase [Clostridium sp. M62/1] gi|295091956|emb|CBK78063.1| peptide deformylase [Clostridium cf. saccharolyticum K10] Length = 159 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 5/141 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+ +P++++ LI++M + MY +G+GLAAVQ+GV ++VVID++D Sbjct: 11 DEILRKECKPVKEMTPHTAELIEDMFDTMYEANGVGLAAVQVGVRKQIVVIDVED----G 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 N V INP+I+ S EGCLS+P V R ++ V+ ++ + ++ +GLL Sbjct: 67 NQYVLINPEILETSGS-QTGPEGCLSVPGKSGTVTRPDYVKVKALNEKMEEFVLEGEGLL 125 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A + HE DHL G+L++D + Sbjct: 126 ARAICHECDHLYGVLYVDKVE 146 >gi|51598326|ref|YP_072514.1| peptide deformylase [Borrelia garinii PBi] gi|51572897|gb|AAU06922.1| polypeptide deformylase [Borrelia garinii PBi] Length = 186 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 24 MVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVRENR 83 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP I S + + Y+EGCLSIP ++ R I V++ D N + I Sbjct: 84 MAR---PLVFINPSITETSYELNSYKEGCLSIPGVYYNLMRPNGIVVKFYDENGKSFTIE 140 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNGILFID+ R+K ++ M + Sbjct: 141 NSDFLARIIQHEMDHLNGILFIDYYEERIKNKLLKPYMRE 180 >gi|253681826|ref|ZP_04862623.1| peptide deformylase [Clostridium botulinum D str. 1873] gi|253561538|gb|EES90990.1| peptide deformylase [Clostridium botulinum D str. 1873] Length = 159 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V + +LRR S+ I++I+ +++ LI ++ + +YS DG+GLAA QIG+L R + Sbjct: 1 MAIKNIVTVENKLLRRKSKRIDRIDDEVLELIQDLKDTLYSGDGVGLAAPQIGILKRAFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+D P++ +NPKI+ + EGCLS P Y V R + V M+ + Sbjct: 61 IDLRDG---NGPLILLNPKILKKIGKYE-DGEGCLSYPGYEGIVVRPRKVVVSGMNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A GL+A + HE DHL+GIL++D ++ Sbjct: 117 NVQYEATGLMARAICHETDHLDGILYMDLAKKM 149 >gi|119383397|ref|YP_914453.1| peptide deformylase [Paracoccus denitrificans PD1222] gi|119373164|gb|ABL68757.1| peptide deformylase [Paracoccus denitrificans PD1222] Length = 166 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 95/167 (56%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + + D L + P+ I + + D+M++ M + G+GLAA QIG++ RL V Sbjct: 1 MTVRPFLPYADRRLHLPAEPVPAITETVRMIWDDMIDTMEAMPGVGLAAPQIGIMQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+++ S ++E ++P A ++R +TVR+++ + + Sbjct: 61 VDASEK--RGQAVRMANPEVLHASVQLRAHEEASPNLPGVSARIERPRAVTVRFLNADGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GL AT +QH++DHLNG L++D+LS L+R M+ K +K + Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGRLYVDYLSPLRRKMLVAKSAKFAR 165 >gi|289209646|ref|YP_003461712.1| peptide deformylase [Thioalkalivibrio sp. K90mix] gi|288945277|gb|ADC72976.1| peptide deformylase [Thioalkalivibrio sp. K90mix] Length = 178 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 9/153 (5%) Query: 12 PILRRVSRPIEKINSD---IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 P LRRV P+ + + D + L+D++++ M++++G+GLAA QIGV +R+ VI++Q Sbjct: 12 PDLRRVCDPVPESDFDSPGLHALVDDLVDTMHASEGLGLAAAQIGVPHRVAVIEIQPGNT 71 Query: 69 R------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 R + +NP + Y EGCLS+P R +V R I V Y + + + Sbjct: 72 RYPGAVPTGRLALVNPVVTVLDPTPQRYWEGCLSVPGLRGEVARPRHIAVDYHEPDGTPR 131 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + +G LAT QHE+DHL+G LFID ++ R Sbjct: 132 HLEPEGFLATVFQHEIDHLDGTLFIDRVTDTTR 164 >gi|239826564|ref|YP_002949188.1| peptide deformylase [Geobacillus sp. WCH70] gi|239806857|gb|ACS23922.1| peptide deformylase [Geobacillus sp. WCH70] Length = 157 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V +P IL + P+++ + ++ L+++M E M DG+GLAA Q+G+ ++ V+D+ Sbjct: 5 PIVTYPADILETMCEPVKQFDRQLIQLLNDMYETMIDEDGVGLAAPQVGIAKQIAVVDVG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R + INP+II + + EGCLS P +VKR+ ++ VR D + + Sbjct: 65 DKHGR---IELINPRIIEARGE-QIGPEGCLSFPGLFGEVKRANYVKVRAQDRRGRVFTL 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 A LA LQHE+DHLNGILF + R Sbjct: 121 EATEFLARALQHEIDHLNGILFTSKVIR 148 >gi|325662245|ref|ZP_08150860.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] gi|331086046|ref|ZP_08335129.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471497|gb|EGC74718.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] gi|330406969|gb|EGG86474.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 156 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 86/147 (58%), Gaps = 6/147 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L +V + +EK+ LID+M + MY G+GLAA Q+GVL R+V ID+ + Sbjct: 11 DDVLTKVCKEVEKVTPRTKVLIDDMFDTMYDAMGVGLAAPQVGVLKRIVTIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+II S + +EGCLS+P V R ++ VR D + + ++ +GLL Sbjct: 66 GPILLINPEIIETSGE-QTGEEGCLSVPGKSGVVTRPNYVKVRAFDEDMKEIVLEGEGLL 124 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDM 157 A HE+DHL+G L+++ + DM Sbjct: 125 ARAFCHEIDHLDGHLYVEKVEGELEDM 151 >gi|297182175|gb|ADI18346.1| N-formylmethionyl-tRNA deformylase [uncultured actinobacterium HF4000_04C13] Length = 180 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 11/171 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LRR + + ++ ++ L D+M MY GIGLAA Q+GV R V Sbjct: 1 MAPHQIRLIGDPVLRRPATDVTDVDGALVRLTDDMFTTMYEAPGIGLAAPQVGVQKRFFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H + V +NP+II SD ++EGCLS+PD ++ R + + +D + Sbjct: 61 YD-----HGEGAGVILNPRIIE-SDGEWTFEEGCLSVPDLTWEITRPKQVHLVGVDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS-----RLKRDMITKKMSKLV 166 I AD + A QHE+DHL+G+L +DHL +R + MS+L Sbjct: 115 EVSIEADEIEARLFQHEIDHLDGVLLVDHLDEDQAREARRALREMTMSRLA 165 >gi|331269019|ref|YP_004395511.1| peptide deformylase [Clostridium botulinum BKT015925] gi|329125569|gb|AEB75514.1| peptide deformylase [Clostridium botulinum BKT015925] Length = 159 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 13/165 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V + +LRR S+ IE I+ +++ LI ++ + +YS DG+GLAA QIGVL R + Sbjct: 1 MAIKDIVTTENKLLRRKSKRIESIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+D P++ +NPKI+ + EGCLS P Y V R + V ++ + Sbjct: 61 IDLRDG---NGPLILLNPKILKKIGKYE-DGEGCLSYPGYEGIVVRPRKVIVSGINEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A GL+A + HE DHL+GIL++D + KKM K+ Sbjct: 117 SAQYEATGLMARAICHETDHLDGILYMD---------LAKKMYKI 152 >gi|84514539|ref|ZP_01001903.1| peptide deformylase [Loktanella vestfoldensis SKA53] gi|84511590|gb|EAQ08043.1| peptide deformylase [Loktanella vestfoldensis SKA53] Length = 169 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + V +P P+LR + P+ I +I L D M+ M + G+GLAA Q+GV L V Sbjct: 1 MTHRAYVQWPHPVLRTPAAPVAAITDEIRALWDEMIVAMDTMPGVGLAAPQLGVGLALAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+I+ S +F ++EG ++P A + R +TVR+++ + + Sbjct: 61 VDAS--TMRGQAVRMANPEILHSSVEFRDHEEGSPNLPGVWARISRPRAVTVRFLNADGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + GL AT +QH++DHL G +FID +++++RDM+ Sbjct: 119 VEERDFVGLWATSVQHQIDHLAGRMFIDRMTKVRRDML 156 >gi|315608229|ref|ZP_07883220.1| peptide deformylase [Prevotella buccae ATCC 33574] gi|315250099|gb|EFU30097.1| peptide deformylase [Prevotella buccae ATCC 33574] Length = 181 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 94/167 (56%), Gaps = 7/167 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 I+ P+LR+V+ I + LI +M E + +++G+GLAA QIG R+ VIDL Sbjct: 2 IYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVIDLDVLS 61 Query: 65 -DHAHRKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D K+ +INP I+ F ++ +EGCLSIP +V R I V+Y D + Sbjct: 62 DDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKYRDTDFV 121 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +G LA +QHE DHL+G +F+D +S L++ +I K+ +++ Sbjct: 122 EHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILK 168 >gi|227552688|ref|ZP_03982737.1| peptide deformylase [Enterococcus faecium TX1330] gi|257888656|ref|ZP_05668309.1| formylmethionine deformylase [Enterococcus faecium 1,141,733] gi|257897388|ref|ZP_05677041.1| formylmethionine deformylase [Enterococcus faecium Com12] gi|293378852|ref|ZP_06625007.1| peptide deformylase [Enterococcus faecium PC4.1] gi|227178175|gb|EEI59147.1| peptide deformylase [Enterococcus faecium TX1330] gi|257824710|gb|EEV51642.1| formylmethionine deformylase [Enterococcus faecium 1,141,733] gi|257833953|gb|EEV60374.1| formylmethionine deformylase [Enterococcus faecium Com12] gi|292642393|gb|EFF60548.1| peptide deformylase [Enterococcus faecium PC4.1] Length = 163 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 91/149 (61%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+ ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ VI Sbjct: 1 MRYPILIHPNDKLKIPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + INP+II + S+ EGCLSIP VKR+ +TVRY D + + Sbjct: 61 EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|269792636|ref|YP_003317540.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100271|gb|ACZ19258.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 168 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 6/157 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +FPDP+LR+ + ++ +L+ +M MY+ DG+GLAA Q+G+ L VID Sbjct: 13 VFPDPVLRQPVEEVRDFGEELSDLLADMWATMYAKDGVGLAAPQVGISKSLAVID----- 67 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 H + V +NP+I++ D +EGCLS P +VKR + I +R+ D + + Sbjct: 68 HHGDRYVVVNPQILS-QDGEEEGEEGCLSFPGIFVNVKRPSRIRLRFQDETGAVKEMELQ 126 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G +A HE+DHL G L IDH+S ++R MI +++K Sbjct: 127 GFIARVFLHEIDHLRGRLLIDHVSPIRRQMIKTRLAK 163 >gi|254438825|ref|ZP_05052319.1| peptide deformylase [Octadecabacter antarcticus 307] gi|198254271|gb|EDY78585.1| peptide deformylase [Octadecabacter antarcticus 307] Length = 164 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 83/151 (54%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV + + ++P +L + P + D+ LI+++ + MY G LAA QIGV R+ V Sbjct: 1 MVTRDIRLWPHAVLTQTCAPASLNDPDLDGLIEDLFDTMYHAKGRVLAAPQIGVTKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ ++P FINP+I + D E CLSIPD V R + +R+ + + Sbjct: 61 VDVTWKDGIRDPRAFINPQITETAGDTVFMDEQCLSIPDTPMPVARPEAVQLRWANRDGG 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + DG+LA C+QHELDHLNG + DH S Sbjct: 121 LETAPFDGILARCIQHELDHLNGTVIFDHQS 151 >gi|32477751|ref|NP_870745.1| peptide deformylase [Rhodopirellula baltica SH 1] gi|39930837|sp|Q7UHZ5|DEF_RHOBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|32448305|emb|CAD77822.1| peptide deformylase [Rhodopirellula baltica SH 1] gi|327543078|gb|EGF29520.1| peptide deformylase [Rhodopirellula baltica WH47] Length = 201 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 15/173 (8%) Query: 5 PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL I FP P LR VSRPI ++++ + ++ D ML++MY DG+GLAA Q+ + R+ V + Sbjct: 2 PLSIIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVAN 61 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 V +NP+I + QEGCLS+P VKR + +R D Sbjct: 62 PTGKRDEGESWVILNPEIDRPKGN-DTAQEGCLSVPGLYGQVKRPKTVRLRGFDLQGNEI 120 Query: 123 IIYADGLLATCLQHELDHLNGILFID------------HLSRLKRDMITKKMS 163 DG +A +QHE+DHL+GI+F D HL K D +K+ + Sbjct: 121 NQVLDGFMARVVQHEVDHLDGIMFFDRIGEEGLRDLEGHLEEFKTDYESKQGT 173 >gi|229495940|ref|ZP_04389664.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406] gi|229317032|gb|EEN82941.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406] Length = 190 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 5/167 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR V++ I ++ LI M + MY +DGIGLAA QIG RL+VID Sbjct: 3 PIYLYGHPVLREVAQDITPEYPNLSGLIAEMWKSMYESDGIGLAAPQIGKSIRLLVIDAS 62 Query: 65 DHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 A + V IN +I S++ +EGCLS+P V+R IT+ Y+D Sbjct: 63 PMAEYFPECKDFKTVMINARITELSEETLSEEEGCLSLPGIHERVERPKEITIEYLDEQF 122 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q + G A +QHE DHL G LF DH+S L++ ++ K++++ Sbjct: 123 TPQTRHLTGFAARVVQHEYDHLEGKLFTDHVSTLRKSLLKNKLARIA 169 >gi|317503055|ref|ZP_07961134.1| peptide deformylase [Prevotella salivae DSM 15606] gi|315665828|gb|EFV05416.1| peptide deformylase [Prevotella salivae DSM 15606] Length = 187 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 92/170 (54%), Gaps = 7/170 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ P+LR+V++ I + LI +M E M +++G+GLAA QIG R+VVIDL Sbjct: 4 PIYIYGQPVLRKVAQDISPDYPQLKELISDMFESMTASNGVGLAAPQIGKDIRVVVIDLD 63 Query: 65 ----DHAHRKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D K FIN ++ DD +EGCLS+P V R I V+Y D Sbjct: 64 VLSDDFPEYKGFRKAFINAHVLEVDDDSPKETLEEGCLSLPGLSEKVTRPTRIHVKYQDE 123 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + +G LA +QHE DHL G +FID + L++ MI K+ +++ Sbjct: 124 DFVEHDEWVEGYLARVMQHEFDHLEGKMFIDRIPPLRKQMIYSKLKAMLK 173 >gi|237795811|ref|YP_002863363.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|229264121|gb|ACQ55154.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 150 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+T+ G GLAA+Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAALQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|225377871|ref|ZP_03755092.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM 16841] gi|225210309|gb|EEG92663.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM 16841] Length = 166 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+L ++ +P++++ LI++ML+ MY +G+GLAA Q+G+L R+VVID+ + Sbjct: 20 DPVLEKICKPVKELTPRTKELIEDMLDTMYEANGVGLAAPQVGILKRIVVIDVGE----- 74 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V +NP I+ S + EGCLSIP V R ++ V D N + I L+ Sbjct: 75 GPVVMVNPVILETSGE-QTGDEGCLSIPGKAGQVTRPNYVKVHAFDENMEEYEIEGTELM 133 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A + HE+DHL+G L+++ + Sbjct: 134 ARAMCHEIDHLDGHLYVEKVE 154 >gi|325280501|ref|YP_004253043.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] gi|324312310|gb|ADY32863.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] Length = 184 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V++ PILR++S I ++ I ++ + M DG+GLAA Q+G R+ V+D Sbjct: 4 PIVVYGHPILRKISEDITPEYPELDKFIRDLFQTMDEADGVGLAAPQVGRNIRIFVVDAN 63 Query: 65 -----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + FIN I+ D EGC+SIP DVKR I + YMD Sbjct: 64 AFEEMDPDCKGFRKAFINAHILERWGDEISRNEGCISIPGIHEDVKRPNCIRISYMDEQG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q G+ A +QHE DHL GILF DHLS LK+ ++ K++ + Sbjct: 124 QEHEEEFCGIKAWIIQHEYDHLEGILFTDHLSALKKRILKNKLNNI 169 >gi|288802833|ref|ZP_06408270.1| peptide deformylase [Prevotella melaninogenica D18] gi|288334650|gb|EFC73088.1| peptide deformylase [Prevotella melaninogenica D18] Length = 186 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 16/174 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61 P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VV+ Sbjct: 4 PIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVVDLD 63 Query: 62 -------DLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113 + +D+ H FIN I+ + D + +EGCLS+P V R+ I V+ Sbjct: 64 VLSDTFPEYKDYRH-----AFINGHILEYDDSETETLEEGCLSLPGIHESVTRAKRIYVK 118 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + D N + DG LA +QHE DHL G +F D LS ++ MI K+ L+Q Sbjct: 119 WYDENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMINSKLKALLQ 172 >gi|312131601|ref|YP_003998941.1| peptide deformylase [Leadbetterella byssophila DSM 17132] gi|311908147|gb|ADQ18588.1| peptide deformylase [Leadbetterella byssophila DSM 17132] Length = 190 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P++ + +LR+ + I K D+ + NM E MY+ GIGLA Q+ + YR+ V+D Sbjct: 4 PIIGYGATVLRKKCQDIVKGELDVKQISQNMFETMYAASGIGLAGPQVNLPYRIFVVDGE 63 Query: 63 -LQDHAHRKNPM---------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + A + + FIN +I+ + + Y+EGCLSIP RADV R IT+ Sbjct: 64 IINNSAETEEEIDPDLVGFKKTFINAQILEETGEPWPYEEGCLSIPGIRADVYRKPVITI 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 RY D + G+ A +QHE DH+ G+LF D+L+ Sbjct: 124 RYFDTDWVEHTESFKGMAARIIQHEYDHIEGVLFTDYLA 162 >gi|257124971|ref|YP_003163085.1| peptide deformylase [Leptotrichia buccalis C-1013-b] gi|257048910|gb|ACV38094.1| peptide deformylase [Leptotrichia buccalis C-1013-b] Length = 172 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 92/160 (57%), Gaps = 5/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ P LR+ S ++ ++ ++ +D M+ +M +G+GLAA Q+ + R V++ D Sbjct: 3 IVLYGHPTLRQKSEKVDVVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLE-HD 61 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +K INP+I+ FSD+ +EGCLSIP V R A I V+Y++ N + + Sbjct: 62 GVVKK----VINPEILEFSDEIVDMEEGCLSIPGVFKKVNRPAKIKVKYLNENGKEVVEE 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + + QHE DH+ GILF D LS + + ++ KK+ L Sbjct: 118 LEEMWSRAFQHEFDHIEGILFTDKLSVMNKRLVAKKLDVL 157 >gi|50235447|gb|AAT70831.1| polypeptide deformylase [Borrelia hermsii] Length = 185 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 91/163 (55%), Gaps = 11/163 (6%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PD +LR ++ + I+ ++ N+ M+ +M G+GLAA Q+G +DL Sbjct: 23 IVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVG-------LDLSI 75 Query: 66 HAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R+N P+VFINP I S + SVY+EGCLSIP D+ R ITV D N + Sbjct: 76 FVVRENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKF 135 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I + LLA +QHE+DHL G+LFID+ R+ + K K Sbjct: 136 FKIESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMK 178 >gi|187917944|ref|YP_001883507.1| peptide deformylase [Borrelia hermsii DAH] gi|119860792|gb|AAX16587.1| peptide deformylase [Borrelia hermsii DAH] Length = 174 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 91/163 (55%), Gaps = 11/163 (6%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PD +LR ++ + I+ ++ N+ M+ +M G+GLAA Q+G +DL Sbjct: 12 IVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVG-------LDLSI 64 Query: 66 HAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R+N P+VFINP I S + SVY+EGCLSIP D+ R ITV D N + Sbjct: 65 FVVRENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKF 124 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I + LLA +QHE+DHL G+LFID+ R+ + K K Sbjct: 125 FKIESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMK 167 >gi|224538349|ref|ZP_03678888.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus DSM 14838] gi|224519978|gb|EEF89083.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus DSM 14838] Length = 171 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 15/169 (8%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 KP+ I+ +P+LR+ IEK I +I+ M + + DG GLAA QI + +L V++ Sbjct: 3 KPITIYGNPVLRKECVSIEKTYPGIQEVIETMWQTQRNADGCGLAAPQINLPIKLFVVNS 62 Query: 64 QDH------AHRKN---------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 +D R+ FIN +I +SD+ EGCLSIPD +V R Sbjct: 63 RDSYACMSIRERERFFSKDDCGIEETFINAEITGYSDEVWTTGEGCLSIPDLYEEVTRPW 122 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 IT++Y D Q+ G A +QHE +H G L+IDHLS ++ + Sbjct: 123 SITIKYQDKEFNEQVKVYHGYTARIIQHEFEHTEGKLYIDHLSPFRKQL 171 >gi|302874748|ref|YP_003843381.1| peptide deformylase [Clostridium cellulovorans 743B] gi|307690637|ref|ZP_07633083.1| peptide deformylase [Clostridium cellulovorans 743B] gi|302577605|gb|ADL51617.1| peptide deformylase [Clostridium cellulovorans 743B] Length = 149 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 6/138 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ S+ +E I+ LI +M++ MY DG+GLAA Q+G+L ++ VID+ + Sbjct: 11 DAVLRKNSKNVEVIDDRTKVLIQDMIDTMYDADGVGLAAPQVGILKKIFVIDIGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+VFINP+I+ + V EGCLSIP A+V+R + V+ ++ N + I+ + LL Sbjct: 66 GPIVFINPEILETEGSY-VDSEGCLSIPGESAEVERPYKVKVKALNENGEEFILEGEELL 124 Query: 131 ATCLQHELDHLNGILFID 148 A + HE DHL G L+ID Sbjct: 125 ARAICHENDHLYGTLYID 142 >gi|313113575|ref|ZP_07799163.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624090|gb|EFQ07457.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255] Length = 178 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G+L RL V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTTFDDRLATLLDDMHETMIAADGVGLAGPQVGMLRRLFV 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P + F+NP+I+ S++ EGCLS P + V R A + VR Sbjct: 61 VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPAAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D + + + A+ LL C+QHE DHL+GI + D K + Sbjct: 121 AQDRHGEWFELEAENLLGRCIQHENDHLDGITIMQSSEYFYEDTEEGKKA 170 >gi|261856616|ref|YP_003263899.1| peptide deformylase [Halothiobacillus neapolitanus c2] gi|261837085|gb|ACX96852.1| peptide deformylase [Halothiobacillus neapolitanus c2] Length = 166 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 13/158 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M ++ +PD L+ P++ N ++ + ID+++E G +G+AA Q+GVL R+ Sbjct: 1 MASLEILTYPDERLKTGCEPVDTFNPEMQSFIDHLIETCSGGPGAVGIAAPQVGVLQRIC 60 Query: 60 VID-------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++D + +H H +V INP+I + D F+V +EGCLS+PDY V R+ I + Sbjct: 61 IVDATRARRPVDNHGH----LVLINPEITAW-DGFAVGREGCLSVPDYTGKVIRAEKIEL 115 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + D N + G A QHE+DHL+GILF+D L Sbjct: 116 KAQDRNGKPCTFTMSGFEARIAQHEVDHLDGILFLDRL 153 >gi|203283991|ref|YP_002221731.1| polypeptide deformylase [Borrelia duttonii Ly] gi|203287534|ref|YP_002222549.1| polypeptide deformylase [Borrelia recurrentis A1] gi|201083434|gb|ACH93025.1| polypeptide deformylase [Borrelia duttonii Ly] gi|201084754|gb|ACH94328.1| polypeptide deformylase [Borrelia recurrentis A1] Length = 165 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 93/163 (57%), Gaps = 11/163 (6%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PD +LR ++ +E I+ ++ ++I M+ +M + G+GLAA Q+G +DL Sbjct: 3 IVFYPDDLLRVQTKDVENIDDELRSIIFEMIGLMDKSKGVGLAAPQVG-------LDLSI 55 Query: 66 HAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 RKN P+VFINP I + S + SVY+EGCLSIP D+ R I + D N + Sbjct: 56 FVVRKNMMSKPLVFINPVITSKSVELSVYKEGCLSIPGVYYDLSRPKSIVIEAYDENGKF 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I +LA +QHE+DHL G+LFID+ R+ + K K Sbjct: 116 FKIEDLDILARIIQHEMDHLKGVLFIDYYEDKLRNKLLKSYLK 158 >gi|163782173|ref|ZP_02177172.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1] gi|159882705|gb|EDP76210.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1] Length = 171 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 94/163 (57%), Gaps = 2/163 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +V +P +L++ + + I+ ++ +LI +M + MY+ +G+GLAA QIGV ++VID Sbjct: 3 REIVTYPAEVLKKPTLEVSDIDREVKSLIKDMFDTMYNAEGVGLAANQIGVPLSVMVIDT 62 Query: 64 QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + +V INP++I S+ Y+EGCLS P +V+R+ + VR ++ + + Sbjct: 63 TPKEDVPDLKLVLINPEVIA-SEGKQKYKEGCLSFPGLSVEVERAKRVKVRALNEHGEPV 121 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + A QHELDHL GI FID L +R + +K KL Sbjct: 122 EVVLEDFPAIVFQHELDHLKGITFIDRLKGWRRRLALEKYRKL 164 >gi|313683649|ref|YP_004061387.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994] gi|313156509|gb|ADR35187.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994] Length = 171 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 98/163 (60%), Gaps = 4/163 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61 P++ +P+ L+ S+ + + + +D+M E M +++GIGLAA+Q+ R++++ Sbjct: 4 PIITYPNKQLKARSQTVVNFDELLHRFLDDMYETMIASNGIGLAAIQVANPIRVLILCIP 63 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + H++N + INP +I +YQEGCLS+P + DV+R ++++Y + + + Sbjct: 64 DEEGNQHKENLLEIINP-VIHNPKGNVLYQEGCLSVPGFYEDVERYETLSLKYQNRHGEA 122 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++A LLA +QHE+DHL G LFI+ L+ +R K+ K Sbjct: 123 CELHASDLLAIAIQHEIDHLEGKLFIEKLTYNRRKKFEKEYKK 165 >gi|189467964|ref|ZP_03016749.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM 17393] gi|189436228|gb|EDV05213.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM 17393] Length = 186 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 15/179 (8%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 KP+ ++ + +LR+ IE+ +I +I+ M + + DG GLAA QI + +L +++ Sbjct: 3 KPITVYGNSVLRKECEDIEQNYPNIQEVIETMWQTLRDADGCGLAAPQINLPIKLFIVNS 62 Query: 64 QD------HAHRKNPMV---------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 +D R++ V FIN KII +S+ EGCLSIPD +V R Sbjct: 63 KDTYTYMSAKEREHFFVEEDCGIEETFINAKIIAYSEKVWTAGEGCLSIPDLYEEVTRPW 122 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +T+RY D + Q G A +QHE +H G L+ID LS L++ +I K+ ++++ Sbjct: 123 SVTIRYQDNEFKEQNRTYYGYTARIIQHEFEHTQGKLYIDRLSPLRKQLIKNKLMRIIK 181 >gi|224531760|ref|ZP_03672392.1| peptide deformylase [Borrelia valaisiana VS116] gi|224511225|gb|EEF81631.1| peptide deformylase [Borrelia valaisiana VS116] Length = 165 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ I I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 3 MVFYPNDLLRVKTKQINNIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVRENK 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP I S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 63 MAR---PLVFINPLITETSYELNSYREGCLSIPGVYYDLMRPKAIVVSFYDENGKSFTIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ R+K ++ M + Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEERIKNKLLKPYMRE 159 >gi|116787193|gb|ABK24406.1| unknown [Picea sitchensis] Length = 290 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 80/145 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PD LR ++PI + + L D M ++MY TDG+GL+A Q+GV +L+V + Sbjct: 111 IVKYPDSRLRAKNKPINIFDEKLQRLADEMFDLMYKTDGVGLSAPQVGVNVQLMVFNPAG 170 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + ++ +NP+I +S V+ EGCLS P+ ADV+R + + D + I+ Sbjct: 171 ESGKGEEVILVNPEIYKYSKRKEVFTEGCLSFPEIYADVERPMSVKIEAWDVKGKKFILS 230 Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150 A QHE DHL ILF + + Sbjct: 231 LKEFNARIFQHEYDHLQRILFFERM 255 >gi|221633590|ref|YP_002522816.1| peptide deformylase [Thermomicrobium roseum DSM 5159] gi|254767609|sp|B9L0C1|DEF_THERP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|221156095|gb|ACM05222.1| peptide deformylase [Thermomicrobium roseum DSM 5159] Length = 176 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ DP LR+ + I ++ ++ L ++ + + + G+GLAA QIGVL R++V Sbjct: 1 MAVRTIITEGDPRLRQKAIRIRVVDEEVRQLARDLWDTVRAARGLGLAAPQIGVLRRIIV 60 Query: 61 IDLQ-DHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + D+ +P V INP+I+ S V EGCLSIP + +V RS +TV+ +D Sbjct: 61 VAIPPDYVEEGDPGVELTLINPEIVRASG-RQVGLEGCLSIPGWYGEVPRSMHVTVKALD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + + GLLA LQHE+DHL GILF+D + Sbjct: 120 LDGREVRVKGSGLLARVLQHEIDHLEGILFVDRIE 154 >gi|324997314|ref|ZP_08118426.1| peptide deformylase [Pseudonocardia sp. P1] Length = 193 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 12/149 (8%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+L R +RP+E+++ I L+D+M E M + +G+GLAA Q+GV RL V D D R Sbjct: 11 DPVLHRPTRPVEQVDDGIRTLVDDMFETMAAANGVGLAANQVGVDLRLFVYDCPDEETRT 70 Query: 71 -------NPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 NP++ + P+++ DD +EGCLS+P R+ + V D + + Sbjct: 71 MRRGLVVNPVLETSERPQVMPDPDD---DEEGCLSVPGESYPTGRADWARVTGTDLDGEP 127 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + G A CLQHE DHL+G L++D L Sbjct: 128 VDVEGRGFFARCLQHETDHLDGHLYLDRL 156 >gi|313892009|ref|ZP_07825610.1| peptide deformylase [Dialister microaerophilus UPII 345-E] gi|313119652|gb|EFR42843.1| peptide deformylase [Dialister microaerophilus UPII 345-E] Length = 153 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 9/140 (6%) Query: 13 ILRRVSRPIEK----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +LR V++P+ + + + +LI +M + MY+ +G+GLAA QIG+ R+ V D D Sbjct: 11 VLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFVADCNDGFD 70 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V+INP+ D + EGCLS+ D +V+R A + V+Y D + + A G Sbjct: 71 -----VYINPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGKRKQKKATG 125 Query: 129 LLATCLQHELDHLNGILFID 148 L A C+QHE+DHLNG LFID Sbjct: 126 LFARCVQHEIDHLNGTLFID 145 >gi|269302867|gb|ACZ32967.1| peptide deformylase [Chlamydophila pneumoniae LPCoLN] Length = 186 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 85/155 (54%), Gaps = 6/155 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 L + PILR+ S PI +I +I NL+ +M + M + G+GLAA Q+G L V+ + Sbjct: 5 LEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVMCVDR 64 Query: 66 HAH------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++P VFINP + S+ + +EGCLSIP R +V R ITV MD N Sbjct: 65 ETEDGELIFSESPRVFINPVLSDPSETLIIGKEGCLSIPGLRGEVFRPQKITVTAMDLNG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + + +G A + HE DHLNG+L+ID + K Sbjct: 125 KIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPK 159 >gi|242058133|ref|XP_002458212.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor] gi|241930187|gb|EES03332.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor] Length = 264 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 79/146 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I ++++ L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 75 VVKYPDPILRARNKRINAFDANLRALADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 134 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP + + V++EGCLS P +V R + + D + Sbjct: 135 VKGEGEEIVLVNPVVYKSAKRLLVFEEGCLSFPGIYGNVLRPESVKIEAQDVTGAKIKVK 194 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 GL A QHE DHL GILF D ++ Sbjct: 195 LSGLPARVFQHEFDHLLGILFFDRMT 220 >gi|229918580|ref|YP_002887226.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b] gi|229470009|gb|ACQ71781.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b] Length = 466 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 79/146 (54%), Gaps = 4/146 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ ILR P+ K + + +D + + MY DG+G+AA Q+ + RL V+ D Sbjct: 4 VVEVPNDILRVTCEPVTKFDKKLRQTVDRLFDTMYEYDGVGVAAPQVNLNQRLAVVHTDD 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+V INP+II S V EGCLSIP V+R I V+ D + I Sbjct: 64 ET---GPLVLINPEIIETSGR-EVGLEGCLSIPGEFGFVERHESIVVKNQDVKGRTHTIQ 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 A G A +QHE+DHL+G+LF D L+ Sbjct: 120 ASGFFARAIQHEMDHLDGVLFTDKLA 145 >gi|291522865|emb|CBK81158.1| peptide deformylase [Coprococcus catus GD/7] Length = 159 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 83/141 (58%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+L +V + ++++ + L+ +MLE MY+ +G+GLAA Q+GVL R+ VID+ + Sbjct: 11 DPVLGKVCKEVKEMTPHLKELVQDMLETMYAAEGVGLAAPQVGVLRRVAVIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P VF+NPKI+ + + + EGCLS+P V+R ++ D + + GL Sbjct: 66 GPYVFVNPKIVETAGE-QIGDEGCLSVPGKSGTVRRPEYVKTVAFDADMNPIEVEGHGLF 124 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A + HE DHL+G L+++ + Sbjct: 125 ARAMCHEFDHLDGHLYLEKVE 145 >gi|218532205|ref|YP_002423021.1| peptide deformylase [Methylobacterium chloromethanicum CM4] gi|254563274|ref|YP_003070369.1| peptide deformylase [Methylobacterium extorquens DM4] gi|218524508|gb|ACK85093.1| formylmethionine deformylase [Methylobacterium chloromethanicum CM4] gi|254270552|emb|CAX26555.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Methylobacterium extorquens DM4] Length = 176 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 10/171 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMN-----LIDNMLEVMYSTDGIGLAAVQIGVL 55 M +PL+ +PD L R + P+ + L ++L+ + + +GL A+ IG Sbjct: 1 MPVRPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRP 60 Query: 56 YRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R+VVI LQ D H V+++P + S + + + EG +S+P V+R A + VRY Sbjct: 61 ERVVVIRLQPDEPH----AVYVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRY 116 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL Sbjct: 117 RDLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167 >gi|291542591|emb|CBL15701.1| peptide deformylase [Ruminococcus bromii L2-63] Length = 158 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V D +L + RP+ K + + +LID+M+E ++ +G+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVKEGDSVLTKKCRPVVKFDDRLADLIDDMIETLHKAEGVGLAAPQVGILRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ +NPKII +S EGCLSIP R ++ V+ D + Sbjct: 61 IDVGE-----GPIELVNPKIIAYSGKQETL-EGCLSIPGKWGYTVRPDYVKVKAQDRHGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +I LLA HELDHL GILF +R+ Sbjct: 115 EFVIDGKDLLAKAFCHELDHLEGILFTQVATRM 147 >gi|225848865|ref|YP_002729029.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643764|gb|ACN98814.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] Length = 179 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 8/163 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----- 63 +PD IL+ ++ I+ + + ID M E MY +G+GLAA QIG+ Y+++VID Sbjct: 8 WPDKILKEPTKEIDFFDDRLKEYIDKMWEFMYKEEGVGLAANQIGIPYQILVIDTSIREK 67 Query: 64 QDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + P MV INPKI+ + + EGCLS P + + R + V + + Sbjct: 68 KNEEETEPPVKMVLINPKIVE-KEGQVMSTEGCLSFPGVQITIPRYKRVKVVGKNEKGED 126 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ + L+ LQHE+DHLNGI FI +LS LKR ++ K K Sbjct: 127 VVVESSEFLSIVLQHEIDHLNGIPFISYLSPLKRKLVLDKYLK 169 >gi|262091714|gb|ACY25304.1| peptide deformylase [uncultured actinobacterium] Length = 175 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 54/143 (37%), Positives = 83/143 (58%), Gaps = 6/143 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 ++ DP+L+ ++ I I+ +++L +NML +MY G+GLA QIGV ++ V D+ D Sbjct: 9 VYGDPVLKTLAASITNIDGKLVSLAENMLHIMYEAPGLGLAGPQIGVQKQIFVYDVDD-- 66 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 +P V +NP I+ S ++ VY EGCLSIP ++ R + VR + + AD Sbjct: 67 ---DPQVILNPTIVESSGEW-VYDEGCLSIPGLFVEMLRPKEVLVRGLTLEGDEIEVEAD 122 Query: 128 GLLATCLQHELDHLNGILFIDHL 150 LLA QHE+DHL G+L D + Sbjct: 123 ELLARLFQHEIDHLQGVLMFDRM 145 >gi|15895739|ref|NP_349088.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC 824] gi|23396569|sp|Q97G95|DEF2_CLOAB RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|15025493|gb|AAK80428.1|AE007746_15 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC 824] gi|325509889|gb|ADZ21525.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum EA 2018] Length = 150 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 88/143 (61%), Gaps = 7/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69 D ILR+ SRP+E ++ I ++D+ML+ + +T+ G +AA Q+G+L +LVVI A Sbjct: 11 DEILRKKSRPVEVVDDKIRQILDDMLDTLQNTENGAAIAAPQVGILKQLVVI-----ATG 65 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 ++ + +NPKI+ + V EGCLSIP+ +KR +TV ++ N + + +G Sbjct: 66 EDIIKLVNPKIVKKEGEQEVV-EGCLSIPNVYGKLKRPKKVTVEALNENGEKITLTGEGF 124 Query: 130 LATCLQHELDHLNGILFIDHLSR 152 LA C HE+DHL+GILF D ++ Sbjct: 125 LAKCFCHEIDHLDGILFTDLVTE 147 >gi|311029970|ref|ZP_07708060.1| peptide deformylase [Bacillus sp. m3-13] Length = 159 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 84/147 (57%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P P+L + + + ++ L+ NM + M DG+GLAA QIG+ R+ ++D+ D Sbjct: 6 IVKYPAPVLEQNCEAVTVFDKRLIRLLSNMYDTMLEADGVGLAAPQIGIAKRIAIVDIDD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP+I+ + V EGCLS PD +VKR+ ++ VR + + + Sbjct: 66 ---KHGKIELINPEIVDEEGE-QVGPEGCLSFPDLYGEVKRADYVKVRAQNRKGKWYELE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A G LA +QHE+DHLNG+LF + R Sbjct: 122 ARGFLARAIQHEIDHLNGVLFTSKVLR 148 >gi|300741380|ref|ZP_07071401.1| peptide deformylase [Rothia dentocariosa M567] gi|300380565|gb|EFJ77127.1| peptide deformylase [Rothia dentocariosa M567] Length = 190 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI+ +P+L R + P+ + + L+ +M E M + G+GLAA QIGV R+ Sbjct: 1 MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +++ +NP K+ D +EGCLS P Y +KR+ ++TV Sbjct: 61 YQMENEDGVTPRGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D A G A C+QHE DHL+G L+++ L++ T +M K+V+ Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTSRMKKVVK 168 >gi|311113462|ref|YP_003984684.1| peptide deformylase [Rothia dentocariosa ATCC 17931] gi|310944956|gb|ADP41250.1| peptide deformylase [Rothia dentocariosa ATCC 17931] Length = 190 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI+ +P+L R + P+ + + L+ +M E M + G+GLAA QIGV R+ Sbjct: 1 MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +++ +NP K+ D +EGCLS P Y +KR+ ++TV Sbjct: 61 YQMENEDGVPARGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D A G A C+QHE DHL+G L+++ L++ T +M K+V+ Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTSRMKKVVK 168 >gi|271968555|ref|YP_003342751.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270511730|gb|ACZ90008.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 162 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 13/152 (8%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + DP+LR + P+ + D+ LID M + MY+ G+GLA QIGV R+ V D + Sbjct: 6 VVGDPVLRTPAEPVVDFDRDLRRLIDEMFDAMYAAQGVGLAGPQIGVSKRVFVYDC---S 62 Query: 68 HRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYR------ADVKRSAFITVRYMDCNAQ 120 RK + INP ++T DD + +EGCLS+P A R+A +TVR +D + Sbjct: 63 SRKGHL--INP-VLTVDDDAEILDEEGCLSVPGRDTGTPIYARTPRAAGVTVRGLDRLGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A GLLA C QHE DHL G+L++D L++ Sbjct: 120 PVQIRARGLLARCFQHETDHLEGMLYVDRLAK 151 >gi|226325272|ref|ZP_03800790.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758] gi|225206620|gb|EEG88974.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758] Length = 156 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 84/141 (59%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L +V + + K+ LID+MLE MY G+GLAA Q+G+L R+VVID+ + Sbjct: 11 DEVLTKVCKEVTKMTPRTTELIDDMLETMYEAMGVGLAAPQVGILKRIVVIDIGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I+ S + +EGCLS+P V R ++ +D + + I +GL+ Sbjct: 66 GPVVMINPRIVESSGE-QTGEEGCLSVPGKSGIVTRPNYVKAVALDEDMKEYEIEGEGLM 124 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A + HEL+HL+G L+++ + Sbjct: 125 ARAICHELEHLDGHLYVEKVE 145 >gi|325000006|ref|ZP_08121118.1| peptide deformylase [Pseudonocardia sp. P1] Length = 182 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + ++++ L+ ++ + M++ G GLAA QIGV R+ V Sbjct: 1 MSIQPVRLFGDPVLRTRATEVTDFDAELRKLVADLTDTMHAEGGAGLAAPQIGVSRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + A INP ++ V EGCLSIP D +R + R D + + Sbjct: 61 YECDGFAGH-----LINPTWEAVGEEEQVGPEGCLSIPGLGFDCRRKLTVVGRGWDMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q++ LLA C+QHE DHL+G+LF+D L R +++ + Sbjct: 116 PQVVEGSELLARCIQHETDHLDGVLFVDRLDAETRKRAMREIRE 159 >gi|240140764|ref|YP_002965244.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Methylobacterium extorquens AM1] gi|240010741|gb|ACS41967.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Methylobacterium extorquens AM1] Length = 176 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 98/172 (56%), Gaps = 12/172 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMN------LIDNMLEVMYSTDGIGLAAVQIGV 54 M +PL+ +PD L R + P+ NS+ + L ++L+ + + +GL A+ IG Sbjct: 1 MPVRPLIFYPDARLHRAAEPV-SANSESLTGESWRALAADVLDTLGAVSAMGLTAIHIGR 59 Query: 55 LYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R+VVI LQ D H V+++P + S + + + EG +S+P V+R A + VR Sbjct: 60 PERVVVIRLQPDEPH----AVYVDPVVAWSSPERAAHPEGSVSMPGVVEPVERPARVRVR 115 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Y D + A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL Sbjct: 116 YRDLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167 >gi|226949660|ref|YP_002804751.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|226844106|gb|ACO86772.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|322806631|emb|CBZ04200.1| peptide deformylase [Clostridium botulinum H04402 065] Length = 150 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+T+ G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|111114886|ref|YP_709504.1| peptide deformylase [Borrelia afzelii PKo] gi|110890160|gb|ABH01328.1| polypeptide deformylase [Borrelia afzelii PKo] Length = 165 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ + V+ Sbjct: 3 MVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSIFVVRENK 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+VFINP I S + + Y+EGCLSIP D+ R I + + D N + I Sbjct: 63 MAK---PLVFINPVITETSYELNSYKEGCLSIPGVYYDLMRPKGIVINFYDENEKSFTIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ R+K ++ M + Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEERIKNKLLKPYMRE 159 >gi|198282740|ref|YP_002219061.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666795|ref|YP_002424934.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247261|gb|ACH82854.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519008|gb|ACK79594.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 167 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 8/162 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVID- 62 P++ +PD L+R + P+ + D+ + ID++ E MY+ G+G+AA Q+ R+V++D Sbjct: 5 PILTYPDSRLQRKADPVSVFDDDLHHFIDDLTETMYAGPGGVGIAAPQVDRAQRIVIVDV 64 Query: 63 ---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 L D H MV INP++ + + V +EGC+S+PD+ +V R+ I V+ D Sbjct: 65 RPKLGDDCH--GLMVLINPELAAW-EGMVVGREGCMSVPDFTGNVIRAERIQVQAQDVLG 121 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + +G A +QHE+DHL+G+LF+D L K D+ +K Sbjct: 122 RERSYECEGFEARAVQHEMDHLDGLLFLDRLVSRKVDLFRRK 163 >gi|222824460|ref|YP_002576034.1| peptide deformylase [Campylobacter lari RM2100] gi|222539681|gb|ACM64782.1| peptide deformylase [Campylobacter lari RM2100] Length = 173 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 5/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M++K ++ +P+P L S +E + D+ L+D+M E M G+GLAA+Q+ V R ++ Sbjct: 1 MIRK-IITYPNPRLFLESEKVENFDKDLHVLLDDMYETMIENKGVGLAAIQVDVPIRALL 59 Query: 61 IDLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +D+ D ++ + INP I D+ EGCLSIP + DV R I + Y D Sbjct: 60 VDIGDEEGEQKDKQTLLEIINPIITPLDDEKISCNEGCLSIPGFYEDVMRYKNIQLDYQD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + Q + A LA +QHE+DHL+G LFI+ LS LKR Sbjct: 120 RFGKPQSLQAHDFLAVAIQHEVDHLDGHLFIEKLSFLKR 158 >gi|223936792|ref|ZP_03628702.1| peptide deformylase [bacterium Ellin514] gi|223894643|gb|EEF61094.1| peptide deformylase [bacterium Ellin514] Length = 191 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 16/169 (9%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 P+LR+ + ++ S+I I +M E MY + GIGLAA Q+ ++ VID++ R + Sbjct: 11 PVLRKKGEKVTRVTSEIKQFIKDMFETMYESRGIGLAAQQVARAVQITVIDVRGITDRPS 70 Query: 72 ---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 P+V INP++ + EGCLS P+ A++ R + V M+ Sbjct: 71 TLELNGKPASVEKFMPLVLINPEVKPVGPKVA-GTEGCLSFPEIFAEITRPETVDVVAMN 129 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 N + A GLLA +QHE DHLNGILFID + + + ++ +L Sbjct: 130 ENGERIEFRAGGLLARAVQHETDHLNGILFIDRMDTETKQELKPELEEL 178 >gi|168183924|ref|ZP_02618588.1| peptide deformylase [Clostridium botulinum Bf] gi|182672944|gb|EDT84905.1| peptide deformylase [Clostridium botulinum Bf] Length = 150 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+T+ G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|119952868|ref|YP_945077.1| peptide deformylase [Borrelia turicatae 91E135] gi|119861639|gb|AAX17407.1| peptide deformylase [Borrelia turicatae 91E135] Length = 165 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ + I++++ N M+ +M + +G+GLAA Q+G+ + V+ ++ Sbjct: 3 IVCYPNDLLRIKTKTVLNIDNELRNTAFKMVNLMDAKNGVGLAASQVGLDLSIFVV--RE 60 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +A K P++FINP I S + +Y+EGCLSIP D+ R I V D N + I Sbjct: 61 NAMSK-PLIFINPLITETSFELVLYKEGCLSIPGVYYDLLRPKSIIVEAYDENGEFFKIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSK 164 + GLLA +QHE+DHL G+LFID+ +L+ +++ M K Sbjct: 120 SSGLLARIVQHEMDHLKGVLFIDYYEDKLRNNLLRSYMKK 159 >gi|307155367|ref|YP_003890751.1| peptide deformylase [Cyanothece sp. PCC 7822] gi|306985595|gb|ADN17476.1| peptide deformylase [Cyanothece sp. PCC 7822] Length = 175 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 7/157 (4%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 +PILR+ ++P+E I ++ I LID+++ S +G+G+AA Q+ YR+ ++ + Sbjct: 12 NPILRQNAQPVEDITDTAIQQLIDSLIATAASANGVGIAAPQVSQSYRVFIVASRPSPRY 71 Query: 70 KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 N P INPKII +S + EGCLS+P R V R ITV Y+D Q Sbjct: 72 PNAPEMVPTAMINPKIIAYSAERVKGWEGCLSVPGVRGLVPRYQAITVEYLDRQGNLQRQ 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 +A QHELDHL+G++F+D L RD+ T++ Sbjct: 132 EFTDFVARIFQHELDHLDGMVFVDRLES-TRDLYTEQ 167 >gi|225849674|ref|YP_002729908.1| peptide deformylase [Persephonella marina EX-H1] gi|225646510|gb|ACO04696.1| peptide deformylase [Persephonella marina EX-H1] Length = 169 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M K ++ +PD L++VS+P+E D + ++ +L M S G+G+AA Q+ + + Sbjct: 1 MEKFEILTYPDERLKKVSKPVEDFGRDFKDFVERLLYTMRNSPAGVGIAAPQVNRHIQTI 60 Query: 60 VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++D ++ H+ N M+ NP+II + + V +EGCLS+PD+ +VKR +I V Sbjct: 61 IVDASEYKHKYNKTNHGLMILSNPRIIAYDGEI-VIREGCLSVPDFTGNVKRHYWIKVEA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + +G A +QHE+DHL G LF+D + K D+ +K+ K Sbjct: 120 EDIDGNTITFDTEGFEAVVIQHEMDHLKGKLFLDRVVSPK-DIFKRKVYK 168 >gi|295394412|ref|ZP_06804636.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] gi|294972764|gb|EFG48615.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] Length = 193 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V++ +P+L R + P+ + ++ L+ +M E + +++G+GLAA QIGV ++ V Sbjct: 1 MAIHPIVVYGEPVLHRKADPVTEFGDELHTLVADMYETLTASNGVGLAAPQIGVGKQIYV 60 Query: 61 IDLQDH-AHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D A + VFINP K+ T + D S EGCLS+P +KR+ +TV Sbjct: 61 YDADDEVAGVRRRGVFINPVLVASKVPTTNPDPSEDTEGCLSVPVLDYPLKRADKVTVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D N Q + +G A +QHE DHL+G L++D L K+ K Sbjct: 121 VDENNQPVSLSVEGWFARIMQHEFDHLHGTLYVDRLDTRWAKRWKKEQKK 170 >gi|163848638|ref|YP_001636682.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl] gi|222526574|ref|YP_002571045.1| peptide deformylase [Chloroflexus sp. Y-400-fl] gi|254767575|sp|A9WHG7|DEF_CHLAA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767577|sp|B9LBS4|DEF_CHLSY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|163669927|gb|ABY36293.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl] gi|222450453|gb|ACM54719.1| peptide deformylase [Chloroflexus sp. Y-400-fl] Length = 188 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 14/168 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-- 70 IL+ RP++ + ++ L+ +M E M + G+GLAA QIG+ +L +I++ + Sbjct: 17 ILKMQCRPVKLPDRNLKQLVADMFETMRAAHGVGLAAPQIGIPIQLCIIEIPAEYEERAD 76 Query: 71 ---------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 P V INP+I+ S + + EGCLS+P + V R ++TV + D N +H Sbjct: 77 GSVVEVAPAEPYVLINPRIVKMSGEEVMRDEGCLSLPGWYGMVPRQTWVTVEFQDLNGKH 136 Query: 122 QIIYADG-LLATCLQHELDHLNGILFIDHLSRLK--RDMITKKMSKLV 166 + G LL +QHE+DHLNGILF + + L RD+ ++ ++ V Sbjct: 137 HRLRRAGDLLGWAIQHEVDHLNGILFTERIRDLSTLRDITKERDAQPV 184 >gi|282877697|ref|ZP_06286512.1| peptide deformylase [Prevotella buccalis ATCC 35310] gi|281300269|gb|EFA92623.1| peptide deformylase [Prevotella buccalis ATCC 35310] Length = 176 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 7/162 (4%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ----DHAH 68 +LR+V++ I + LI +M E + S+DGIGLAA QIG R+VVIDL D Sbjct: 1 MLRKVAQDITPEYEGLGQLIQDMFETLDSSDGIGLAAPQIGKSIRVVVIDLNVLSDDFPE 60 Query: 69 RKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 K+ +INP II ++ EGCLSIP V R+ I V+YMD + + Sbjct: 61 YKDFRRAYINPHIIEIDENAPKESMDEGCLSIPGIHEAVSRTTRIHVQYMDEDFTPHDEW 120 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G LA +QHE DHL+G +F+D +S ++ MI K+ + Q Sbjct: 121 IEGYLARVMQHEFDHLDGKMFVDRISPFRKQMIKNKLKGMTQ 162 >gi|209549461|ref|YP_002281378.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535217|gb|ACI55152.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 164 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 3/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P++ +P P L+ V P+ +S + L D++L M + G+G+ A IGV RL V++L Sbjct: 4 RPILRYPHPGLKTVCAPVTVFDSSLAALADDLLATMRAAPGVGITAAHIGVFTRLTVLEL 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + +++NP+I FS + + EG +S+P +V R I RY D Sbjct: 64 DKTDGVR---LYVNPEITWFSKETMSHAEGSVSMPGATDEVTRPRSIRFRYQDAEGGMHE 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LA C+QHE+D LNGI ++ LSRLKRD + KK K Sbjct: 121 DVADDFLAICIQHEVDQLNGIFWLQRLSRLKRDRLVKKWEK 161 >gi|262341227|ref|YP_003284082.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272564|gb|ACY40472.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 171 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 3/165 (1%) Query: 5 PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+VI+ +PILR+ I+ +I LI +M E ++ GIGLAA QIG RL +++ Sbjct: 4 PIVIYGNPILRKKCLDIDLCSCKKEINQLIKDMFETIHQAKGIGLAAPQIGKNIRLFIVE 63 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + K VFIN KI+ + EGCLSIP VKR + + + Y D N + Q Sbjct: 64 -TPYLDGKYKEVFINAKILKIHGKEYKFNEGCLSIPGIMGYVKRKSNVLIEYYDHNWKKQ 122 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ A + HE DHL+G LFID+ S ++ I KK+ L + Sbjct: 123 KKTLTGICARVILHEYDHLDGKLFIDYFSSTRKKRIEKKLISLSE 167 >gi|325290451|ref|YP_004266632.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271] gi|324965852|gb|ADY56631.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271] Length = 150 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 54/143 (37%), Positives = 86/143 (60%), Gaps = 6/143 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V + ILR ++ ++KI +I+ L++N+ + +Y++ G+GLAA QIG+ R+ V+D+ D Sbjct: 6 IVKMGEDILREKAQEVKKITPNILKLLENLTDTLYASQGVGLAAPQIGISKRVAVVDIGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 INP II + + +EGCLSIP + +VKRSA + V+ D Sbjct: 66 GLFE-----LINPVIIERYGE-EIDKEGCLSIPGIQGEVKRSAKVVVQCQDREGNLVQYA 119 Query: 126 ADGLLATCLQHELDHLNGILFID 148 +G LA QHE+DHL+G+LF+D Sbjct: 120 GEGFLARAFQHEIDHLDGVLFVD 142 >gi|309789939|ref|ZP_07684515.1| peptide deformylase [Oscillochloris trichoides DG6] gi|308227959|gb|EFO81611.1| peptide deformylase [Oscillochloris trichoides DG6] Length = 185 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 16/158 (10%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN-- 71 L+ RP++ + ++ L+ +M E M + G+GLAA Q+G+ +L +I++ +++ Sbjct: 18 LKMQCRPVKLPDRNLKQLVADMFETMRKSHGVGLAAPQVGLPIQLCIIEIPAEIEQRDDG 77 Query: 72 ---------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA-QH 121 V INP+I+ S D + EGCLS+P + V R +++TV Y D N QH Sbjct: 78 TEVEVAPAEEYVLINPRIVKTSGDEIMRDEGCLSLPGWYGMVPRHSWVTVEYQDFNGKQH 137 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 ++ ADGLL +QHE+DHL+G+LF + + RD+ T Sbjct: 138 RLRKADGLLGWAIQHEVDHLHGVLFTERI----RDLST 171 >gi|257057414|ref|YP_003135246.1| peptide deformylase [Saccharomonospora viridis DSM 43017] gi|256587286|gb|ACU98419.1| peptide deformylase [Saccharomonospora viridis DSM 43017] Length = 183 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I +P+L + +R + + ++ L+++M E MY+ +G+GLAA QIGV R+ V Sbjct: 1 MTIHPICIVGEPVLHKPTREVSSFDDELATLVEDMFETMYAAEGVGLAANQIGVDLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D ++ V +NPK+ T D EGCLS+P R+++ V Sbjct: 61 YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDNDWEGCLSVPGESFPTGRASWAKVTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 D + G A CLQHE DHL+G L++D L R R KKM K Sbjct: 121 DVEGNPVEVEGTGYFARCLQHETDHLDGYLYLDRLIGRHAR--AAKKMLK 168 >gi|53804337|ref|YP_113830.1| peptide deformylase [Methylococcus capsulatus str. Bath] gi|53758098|gb|AAU92389.1| polypeptide deformylase [Methylococcus capsulatus str. Bath] Length = 191 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +P+LR+ +RP+ E+I S + LI +M E M G+GLAA QIG +L VI+ + Sbjct: 15 EPVLRQRARPLSPEEIRSAAVQALIGHMRETMRDAPGVGLAAPQIGQGLQLAVIEDRADY 74 Query: 68 HR-----------KNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 HR + P+ F +NP+I+ S++ V+ EGCLS+ + A V+R+ ++ V Sbjct: 75 HRGLSAEELAARGREPVPFHVIVNPEIVARSEETDVFHEGCLSLAGFSARVERARWVRVS 134 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D + Q I A G A LQHE+DHL+G L+ID + Sbjct: 135 CLDHRGEPQTIEASGWYARILQHEIDHLHGRLYIDRM 171 >gi|82523804|emb|CAI78547.1| polypeptide deformylase [uncultured Chloroflexi bacterium] Length = 176 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 9/159 (5%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V PDP+LRR +R + ++ LID+M+E M S G+GLAA Q+ ++++ I+ + Sbjct: 6 IVFTPDPVLRRKARKVTDFGPELQTLIDDMVETMRSAPGVGLAAPQVAESWQVITIEYSE 65 Query: 66 HAH-------RKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + P ++ +NP+I S++ V EGCLS+P +V+R+ +TV+ + Sbjct: 66 ESEEGEEGEEKVPPKLYTLVNPQITRASNETIVGTEGCLSVPGIVGEVERNEAVTVKAQN 125 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 Q I A LA QHE+DHL G+LF D L R Sbjct: 126 RRGQPVTIKAQDWLARIFQHEIDHLEGVLFTDLTDELWR 164 >gi|187777638|ref|ZP_02994111.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC 15579] gi|187774566|gb|EDU38368.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC 15579] Length = 150 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + IF D ILR+ S+ +E ++ I ++++M + MY+T+ G GLAA Q+G+L RLV Sbjct: 1 MALRQIRIFDDEILRKKSKVVEVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ +KR +T++ ++ Sbjct: 61 VIDMG-----QGLIKLVNPKIINKEGTQEVI-EGCLSIPNTWGKLKRPKKVTIQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|269219486|ref|ZP_06163340.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211065|gb|EEZ77405.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332] Length = 161 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR PI++I + L+++++E + GLAA QIGV R Sbjct: 1 MTFRPIRIVGDPVLRTPCSPIDEITPGVKALVEDLVENVDMDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +++ +NP I+ SDD F +EGCLS+PD KRS + D + Sbjct: 61 WNIEGEIG-----YILNPVIVELSDDEFQDGEEGCLSVPDLWFPTKRSLYARAEGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + +++ +GL+ C+QHE+DHL+G L+ID L R R + + L Sbjct: 116 RKKVVEGEGLMGRCIQHEVDHLDGHLYIDRLDRETRKKAMRAIRDL 161 >gi|68536091|ref|YP_250796.1| peptide deformylase [Corynebacterium jeikeium K411] gi|68263690|emb|CAI37178.1| polypeptide deformylase [Corynebacterium jeikeium K411] Length = 168 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 10/160 (6%) Query: 9 FPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64 F DP+L+ V+ P+ E+I ++ L+++MLE M G+GLAA QIG+ R+ V D Sbjct: 9 FGDPVLKTVADPVKPEQIQDAGTRRLVEDMLETMDHYGGVGLAANQIGITRRIFVFDCDG 68 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D H INP ++ EGCLSIPD DV R+ + +R + + + Sbjct: 69 DRGH------VINPTWEAVGEETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTVDGEQVDR 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L+A C+QHE DHL+G+LFI HLS +R K++ + Sbjct: 123 EVTDLMARCVQHETDHLDGVLFIQHLSTEQRREAMKQIRE 162 >gi|325292946|ref|YP_004278810.1| polypeptide deformylase [Agrobacterium sp. H13-3] gi|325060799|gb|ADY64490.1| polypeptide deformylase [Agrobacterium sp. H13-3] Length = 164 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L + P+ + + NL+ ++++ M + G+G+ A IGV R+ V Sbjct: 1 MAIRPILSYPHAGLSEICAPVTVFDDHLQNLVTDLIDTMRAAPGVGITAAHIGVKQRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +INP+I++ S + EG +S+P + +V+R + + VR+ D Sbjct: 61 LELTP----GTVLTYINPEIVSHSAQTMRHVEGSVSMPGFTEEVERPSEVEVRFQDVAGV 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A A C+QHE+D L+G+ ++ LS+LKRD + KK K Sbjct: 117 EHRESAKAFHAICIQHEIDQLDGVFWLKRLSKLKRDRLVKKWEK 160 >gi|298246394|ref|ZP_06970200.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] gi|297553875|gb|EFH87740.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] Length = 169 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 92/151 (60%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PILR+ ++ + + ++ + L+D+M E M++++G+GLAA QI + R+ V Sbjct: 1 MAMRQIITSENPILRQKAKKVHRFDASLQKLVDDMFETMHASNGVGLAAPQIALSIRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDCNA 119 + + + NP+I+ ++ QEGCLSIP Y +++R+A I V+ +D Sbjct: 61 AEYEGRR-----VAIFNPEIVK-AEGEERGQEGCLSIPGYLGNNIRRAAKIVVKGVDVKG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + A+G A LQHE+DHL+GILF+D L Sbjct: 115 KPVRVNAEGWFARILQHEIDHLDGILFLDRL 145 >gi|291296560|ref|YP_003507958.1| peptide deformylase [Meiothermus ruber DSM 1279] gi|290471519|gb|ADD28938.1| peptide deformylase [Meiothermus ruber DSM 1279] Length = 194 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 15/160 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-VVIDL 63 P+ ++ DP+L++ + P++ S I L +NMLE M+ G+GLAA Q+GV RL V + Sbjct: 6 PIRLYGDPVLKKKALPVQDF-SGIPQLAENMLETMFEARGVGLAAPQVGVSQRLFVAAEY 64 Query: 64 QDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFIT 111 D + P V +NP +IT+ EGCLS+P Y +R + Sbjct: 65 LDDDEEEGPEADLKTRVKQLYVMVNP-VITYRAGRQSILEGCLSLPGLYAEGAQRDLQVR 123 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V Y D + Q +++ A+G LA +QHE+DHL+GILF +S Sbjct: 124 VEYQDEHGQKKVLEAEGYLAVVMQHEIDHLDGILFFQRMS 163 >gi|326790873|ref|YP_004308694.1| peptide deformylase [Clostridium lentocellum DSM 5427] gi|326541637|gb|ADZ83496.1| peptide deformylase [Clostridium lentocellum DSM 5427] Length = 149 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 6/138 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 + +LR++S+P++ + + L+D+M E MY +G+G+AA Q+G+L R ++D+ + Sbjct: 8 EEVLRKISKPVKSFDESLWTLLDDMKETMYLAEGVGIAAPQVGLLKRAFIVDIGE----- 62 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+ F+NP+I+ + + +EGCLS+P V+R ++ +R D N I + Sbjct: 63 GPVEFVNPEILAVEGE-QLGEEGCLSVPKRYGTVRRPNYVKMRAQDRNGNVFEIEGKEFM 121 Query: 131 ATCLQHELDHLNGILFID 148 A + HE DHL G LF+D Sbjct: 122 ARAMLHEFDHLEGKLFVD 139 >gi|329120996|ref|ZP_08249627.1| peptide deformylase [Dialister micraerophilus DSM 19965] gi|327471158|gb|EGF16612.1| peptide deformylase [Dialister micraerophilus DSM 19965] Length = 153 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 9/140 (6%) Query: 13 ILRRVSRPIEK----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +LR V++P+ + + + +LI +M + MY+ +G+GLAA QIG+ R+ V D + Sbjct: 11 VLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFVADCNEGFD 70 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V+INP+ D + EGCLS+ D +V+R A + V+Y D + + A G Sbjct: 71 -----VYINPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGKRKQKKATG 125 Query: 129 LLATCLQHELDHLNGILFID 148 L A C+QHE+DHLNG LFID Sbjct: 126 LFARCVQHEIDHLNGTLFID 145 >gi|289705546|ref|ZP_06501938.1| peptide deformylase [Micrococcus luteus SK58] gi|289557775|gb|EFD51074.1| peptide deformylase [Micrococcus luteus SK58] Length = 191 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 79/150 (52%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ PDP+LR + P+ +D+ L+ +M+ M++ G+GLAA Q+GV R+ V Sbjct: 1 MTVLPVRTVPDPVLRTAASPVPA-GADVRALVTDMIATMHAVGGVGLAAPQVGVGLRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ A +NP + T EGCLS+P R R+A VR D + Sbjct: 60 FDVAGVAGH-----VVNPVLETAGQALREPGEGCLSVPGLRYHPARAAEAVVRGTDVDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 GLLA CLQHE DHL+GIL++D L Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRL 144 >gi|15618975|ref|NP_225261.1| peptide deformylase [Chlamydophila pneumoniae CWL029] gi|15836598|ref|NP_301122.1| peptide deformylase [Chlamydophila pneumoniae J138] gi|16753049|ref|NP_445322.1| peptide deformylase [Chlamydophila pneumoniae AR39] gi|6225254|sp|Q9Z6J2|DEF_CHLPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|4377403|gb|AAD19204.1| Polypeptide Deformylase [Chlamydophila pneumoniae CWL029] gi|7189698|gb|AAF38582.1| polypeptide deformylase [Chlamydophila pneumoniae AR39] gi|8979440|dbj|BAA99274.1| polypeptide deformylase [Chlamydophila pneumoniae J138] Length = 186 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 6/155 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---- 61 L + PILR+ S PI +I +I NL+ +M + M + G+GLAA Q+G L V+ Sbjct: 5 LEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVMCVDR 64 Query: 62 DLQDHA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + +D ++P VFINP + S+ + +EGCLSIP R +V R ITV MD N Sbjct: 65 ETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAMDLNG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + + +G A + HE DHLNG+L+ID + K Sbjct: 125 KIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPK 159 >gi|220926453|ref|YP_002501755.1| peptide deformylase [Methylobacterium nodulans ORS 2060] gi|219951060|gb|ACL61452.1| peptide deformylase [Methylobacterium nodulans ORS 2060] Length = 165 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 94/161 (58%), Gaps = 5/161 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 L+ +PDP LR+ + P + + + ++ E + + IGL A G+ R+ VI L Sbjct: 6 LLRYPDPRLRQPAPPAALPDPGVSAVAADLAETLAAHGAIGLTAPHAGLPVRVTVIRLGP 65 Query: 66 HAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+ ++NP+++ S + + ++EG +++P +V+R A + VR+ D + + I Sbjct: 66 DA----PLATYVNPEVVWASSETARHREGSVAMPGVDEEVERPARVRVRFQDLDGTPRQI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A+G LA CLQHE+D L+G+ + + LSRLKR+ + K+ K+ Sbjct: 122 AAEGFLAACLQHEIDQLDGVFWTERLSRLKRERLLKRFGKV 162 >gi|260578786|ref|ZP_05846693.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] gi|258603084|gb|EEW16354.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] Length = 168 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 10/160 (6%) Query: 9 FPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64 F DP+L+ V+ P+ E+I ++ L+++MLE M G+GLAA QIG+ R+ V D Sbjct: 9 FGDPVLKTVADPVKPEQIQDAATRRLVEDMLETMDHYGGVGLAANQIGITRRIFVFDCDG 68 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D H INP D+ EGCLSIPD DV R+ + +R + + + Sbjct: 69 DRGH------VINPTWEAVGDETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTVDGEQVDR 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L+A C+QHE DHL+G LFI HLS +R K++ + Sbjct: 123 EVTDLMARCVQHETDHLDGTLFIQHLSAEQRREAMKQIRE 162 >gi|326798672|ref|YP_004316491.1| peptide deformylase [Sphingobacterium sp. 21] gi|326549436|gb|ADZ77821.1| Peptide deformylase [Sphingobacterium sp. 21] Length = 189 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 96/177 (54%), Gaps = 12/177 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P++ + LR+ + D+ + I N+ + + + G+GLAA Q+ +L V+D Sbjct: 4 PILAYGATNLRKACLTVSPSYPDLNSFIKNLWQTLDNAQGVGLAAPQVNENIQLFVVDSR 63 Query: 63 -------LQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D A + P + FINPKI+ SD+ + +EGCLSIP VKR ++I + Sbjct: 64 ISFSSVNTEDMAQKDYPGIRQAFINPKIVAHSDEMELDEEGCLSIPGISFPVKRFSWIKM 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Y+D N Q Y G A +QHE DH+ G L ID+LS L++ MI KK++K+ R Sbjct: 124 TYLDENFQLHTDYFYGRTARIIQHEYDHILGKLPIDYLSELQKLMINKKLNKIRNGR 180 >gi|33242441|ref|NP_877382.1| peptide deformylase [Chlamydophila pneumoniae TW-183] gi|33236952|gb|AAP99039.1| polypeptide deformylase [Chlamydophila pneumoniae TW-183] Length = 204 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 85/155 (54%), Gaps = 6/155 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 L + PILR+ S PI +I +I NL+ +M + M + G+GLAA Q+G L V+ + Sbjct: 23 LEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVMCVDR 82 Query: 66 HAH------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++P VFINP + S+ + +EGCLSIP R +V R ITV MD N Sbjct: 83 ETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAMDLNG 142 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + + +G A + HE DHLNG+L+ID + K Sbjct: 143 KIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPK 177 >gi|291458602|ref|ZP_06597992.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419135|gb|EFE92854.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262] Length = 169 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 4/148 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPIL + + I+ + LI +ML+ MY +G+GLAA Q+GVL R+ VID+ D Sbjct: 11 DPILEKECKEIKNVTERTRELIRDMLDTMYEANGVGLAAPQVGVLRRVFVIDIGDEKR-- 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 V INP++ ++ EGCLS+P V R + V+ D + + A+GLL Sbjct: 69 --YVCINPEVSVLGEELQTGPEGCLSVPGKEGTVTRPMRVHVKAKDIDFKDYEFDAEGLL 126 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMI 158 A + HE DHLNG+++ + RD++ Sbjct: 127 ARAVSHENDHLNGVMYTTRVEGELRDVV 154 >gi|305680739|ref|ZP_07403546.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] gi|305658944|gb|EFM48444.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] Length = 169 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 5/157 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + IF DP+L + I + + +L+++ML+ M + G+GLAA QIGVL R+ V Sbjct: 1 MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMLDTMDAAGGVGLAANQIGVLRRVFV 60 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D ++ R + INP+ ++ + EGCLSIP+ AD +R + V D + Sbjct: 61 FDCTTEEDGMRGH---IINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYD 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I A GL+A C+QHE DHL+G+LF+ L+ +R Sbjct: 118 GNPLTITASGLMARCIQHETDHLDGVLFLRRLTPERR 154 >gi|225850189|ref|YP_002730423.1| peptide deformylase [Persephonella marina EX-H1] gi|225646575|gb|ACO04761.1| peptide deformylase [Persephonella marina EX-H1] Length = 176 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 5/160 (3%) Query: 9 FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---Q 64 +PD IL++ + ++ + + +D M + MY DG+GLAA QIG+ YR++VID + Sbjct: 8 WPDKILKQKMKEVDFFSDGKLKEYVDVMFKKMYELDGVGLAANQIGIPYRIIVIDTTVRE 67 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + +V INP+I+ + EGCLS P + + R+ + V+ D N I Sbjct: 68 EEGEKGVKLVLINPQIVEKEGEIE-STEGCLSFPGVQITIPRAERVKVKAKDINGNDIEI 126 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L+ LQHE+DH+NGI FI++L +K+ M+ +K K Sbjct: 127 EGKDFLSVVLQHEIDHINGIPFINYLPPVKKRMVLEKYMK 166 >gi|148380240|ref|YP_001254781.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|153933663|ref|YP_001384545.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153937608|ref|YP_001388061.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|148289724|emb|CAL83829.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|152929707|gb|ABS35207.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152933522|gb|ABS39021.1| peptide deformylase [Clostridium botulinum A str. Hall] Length = 150 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+T+ G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ V R A +TV+ ++ + Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGRVIRPAKVTVQALNEDG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|260588060|ref|ZP_05853973.1| peptide deformylase [Blautia hansenii DSM 20583] gi|331082371|ref|ZP_08331497.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|260541587|gb|EEX22156.1| peptide deformylase [Blautia hansenii DSM 20583] gi|330400857|gb|EGG80458.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 159 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 5/138 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D IL + R +EK+ I LID+M + MY G+GLAA Q+G+L ++VVID + Sbjct: 11 DDILTKECRKVEKMTPKIRELIDDMFDTMYEAYGVGLAAPQVGILKQIVVIDTTG----E 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +P+V INP+II S +EGCLS+P V R ++ VR D + Q I+ + LL Sbjct: 67 DPIVLINPEIIETSGS-QTGEEGCLSVPGMSGVVTRPNYVKVRAFDEDMQEFILEGEELL 125 Query: 131 ATCLQHELDHLNGILFID 148 A + HE DHL+G L+ + Sbjct: 126 ARAICHETDHLHGRLYTE 143 >gi|210622388|ref|ZP_03293141.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275] gi|210154270|gb|EEA85276.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275] Length = 146 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 +P+LR+ +P+ K + + L+D+M + MY DG+GLAA Q+G+L R VVID+ + Sbjct: 11 EPVLRKKCKPVTKFDEKLGQLLDDMADTMYEADGVGLAAPQVGMLKRAVVIDIGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+II + + + EGCLS+ + V R F+ V+ D + + + + LL Sbjct: 66 GLIELINPEIIETAGEQTDI-EGCLSVDNINEPVTRPYFVKVKAQDRHGKEFELAGEELL 124 Query: 131 ATCLQHELDHLNGILFIDHLSR 152 A HELDHL+GILF+D + + Sbjct: 125 ARAFCHELDHLDGILFVDRIEK 146 >gi|87308719|ref|ZP_01090858.1| peptide deformylase [Blastopirellula marina DSM 3645] gi|87288430|gb|EAQ80325.1| peptide deformylase [Blastopirellula marina DSM 3645] Length = 194 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 1/146 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P P LR S+P++++++D+ ++ M E+MY GIGLAA Q+ + RL V +L Sbjct: 5 VVHYPHPTLRYQSKPVKRVDADLRKIVAEMFELMYENRGIGLAANQVDLPIRLFVANLSG 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +VFINP +I+ +EGCLS+P VKR A I + + Sbjct: 65 TKGEGEELVFINP-VISRPKGNEEEEEGCLSLPQVFGPVKRPAEIQFDAYNLQGELFSQR 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 DG+LA +QHE DHL+GI+F D + Sbjct: 124 IDGMLARVVQHETDHLDGIMFFDRMQ 149 >gi|86357835|ref|YP_469727.1| peptide deformylase [Rhizobium etli CFN 42] gi|86281937|gb|ABC91000.1| peptide deformylase protein [Rhizobium etli CFN 42] Length = 164 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V +P+ ++ + L +++L M + G+G+ A IGVL R+ V Sbjct: 1 MPVRPILRYPHPGLKTVCQPVTAFDASLAALAEDLLATMRAAPGVGITAAHIGVLLRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L D A +++NP+I S + + EG +S+P +V R I RY D Sbjct: 61 LEL-DRA--DGVRLYVNPQITWRSQETISHAEGSVSMPGATEEVTRPRAIRFRYQDAGGI 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+G LA C+QHE+D L+GI ++ LSRLKR+ + KK K Sbjct: 118 VHEKAAEGFLAICVQHEVDQLDGIFWLQRLSRLKRERLVKKWEK 161 >gi|153953994|ref|YP_001394759.1| peptide deformylase [Clostridium kluyveri DSM 555] gi|219854608|ref|YP_002471730.1| hypothetical protein CKR_1265 [Clostridium kluyveri NBRC 12016] gi|146346875|gb|EDK33411.1| Hypothetical protein CKL_1369 [Clostridium kluyveri DSM 555] gi|219568332|dbj|BAH06316.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 147 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ + D +LR+ SR I+ IN I+ L+D+M E +Y G+GLAA Q+GVL R VV Sbjct: 1 MALRNVIKYGDELLRKKSRKIDVINDRILTLLDDMEETLYKECGVGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II +S+ + EGCLSIP+ + +VKR + V+ ++ + Sbjct: 61 IDIGEGIFK-----LINPEII-YSEGSYIDVEGCLSIPEIQGEVKRPKKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 II + LLA HE+DHL+GILF+D + Sbjct: 115 EVIIEGEDLLARAFCHEIDHLDGILFVDKM 144 >gi|163751756|ref|ZP_02158973.1| peptide deformylase [Shewanella benthica KT99] gi|161328320|gb|EDP99480.1| peptide deformylase [Shewanella benthica KT99] Length = 114 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 72/113 (63%), Gaps = 3/113 (2%) Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +G + ++VIDL + R P V INP+I+ DF + +EGCLSIP YRA V RS +T Sbjct: 3 VGSQHAILVIDLSEE--RDQPQVLINPEIVATEGDF-IGEEGCLSIPGYRAKVARSEQVT 59 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V+ +D + I D LA LQHE+DHL GI+F DHLS+LK+ + KK+ K Sbjct: 60 VKALDRTGKPFDIETDTFLAIVLQHEIDHLQGIVFTDHLSKLKQQIALKKVKK 112 >gi|260890452|ref|ZP_05901715.1| hypothetical protein GCWU000323_01622 [Leptotrichia hofstadii F0254] gi|260859694|gb|EEX74194.1| peptide deformylase [Leptotrichia hofstadii F0254] Length = 171 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 5/157 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ P LR S ++ ++ + +D M+ +M +G+GLAA Q+ + R V++ Sbjct: 3 IVLYGHPTLREKSEKVDAVDDSLRETLDEMVALMRKANGVGLAANQVDIAKRFFVLE--- 59 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H INP+I+ FS++ + +EGCLSIP V R A I V+Y++ N + + Sbjct: 60 --HEGVVKKVINPEILEFSEEIADMEEGCLSIPGIYKKVNRPAKIKVKYLNENGEEVVEE 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A QHE DH+ GILF D LS + + ++ KK+ Sbjct: 118 LDEMWARAFQHEFDHIEGILFTDKLSVMNKRLVAKKL 154 >gi|312880068|ref|ZP_07739868.1| peptide deformylase [Aminomonas paucivorans DSM 12260] gi|310783359|gb|EFQ23757.1| peptide deformylase [Aminomonas paucivorans DSM 12260] Length = 181 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 6/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +FPDP+LR + + + ++++ MY DG+GLAA Q+G+ ++ V+D Q Sbjct: 21 ICVFPDPVLRVPTEKVADFGPSFQSFLEDLWNTMYLRDGVGLAAPQVGISRKVTVVDAQG 80 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 V NP+I+ + +V +EGCLS P V R I +RY + + Sbjct: 81 QK-----FVLANPEILEREGE-TVAEEGCLSFPGIFVPVLRPTRIRLRYQNERGEPVERE 134 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 LA HE+DHLNG L IDH+S L+R I +K+ K D Sbjct: 135 VVDFLARVFSHEIDHLNGRLLIDHVSPLRRQFIQRKLRKAASEAD 179 >gi|168180757|ref|ZP_02615421.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|182668503|gb|EDT80482.1| peptide deformylase [Clostridium botulinum NCTC 2916] Length = 150 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+T+ G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCL+IP+ + R A +TV+ ++ N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLNIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|168055848|ref|XP_001779935.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668649|gb|EDQ55252.1| predicted protein [Physcomitrella patens subsp. patens] Length = 202 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++++PDP LR ++ I+ + + L++ ML+VMY TDG+GLAA Q+GV RL+V + Sbjct: 13 VILYPDPRLRAKNKFIKVFDDKLQQLVNEMLDVMYKTDGVGLAAPQVGVNVRLMVYNPSG 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP----------DYRADVKRSAFITVRYM 115 V +NP+I+ + ++ EGCLS P A+V+R + + Sbjct: 73 ERGSGKEYVLVNPRIVKYGKSRDLFDEGCLSFPVLERGPNQSLTIEAEVERPKSVRIDAQ 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + I A QHE DHL GIL+ D ++ D I ++ KL +L Sbjct: 133 DIKGKKFSINLKDFQARIFQHEYDHLEGILYFDRMTPEVLDTIRPELEKLEKL 185 >gi|157825792|ref|YP_001493512.1| polypeptide deformylase [Rickettsia akari str. Hartford] gi|157799750|gb|ABV75004.1| Polypeptide deformylase [Rickettsia akari str. Hartford] Length = 129 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 80/117 (68%), Gaps = 1/117 (0%) Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +G+L R+ +++L ++ ++ +P+V INP+I FS+ + E LS P A + RS I Sbjct: 2 VGILKRIAIVELHEN-NKSSPIVLINPEITYFSEAKQTFIECSLSFPGIEASITRSKVIK 60 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 V+Y+D + Q + A+G LAT +QH++D+LNG F+D+LS+LKRDM+ KKM K ++L Sbjct: 61 VKYLDYDGNKQELDAEGFLATVIQHKIDYLNGKTFLDYLSKLKRDMLLKKMLKHIKL 117 >gi|126728525|ref|ZP_01744341.1| peptide deformylase [Sagittula stellata E-37] gi|126711490|gb|EBA10540.1| peptide deformylase [Sagittula stellata E-37] Length = 165 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 1/161 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PD LR S P+ + S + L+++M E MY+ G GLAA Q+GV RL V+D Sbjct: 5 PILTWPDTGLRAASMPV-RAPSAVARLVEDMFETMYAAPGRGLAAPQVGVRSRLFVMDAT 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 K P V INP + +E CLS+P V R I +RY D + + + Sbjct: 64 WKDGEKTPTVCINPVVAPLDGPEEPGEEACLSMPGVSVMVTRPTRIRLRYTDLDDKTHEV 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G A QHE DHL+G++ HL +R ++ + L Sbjct: 124 VLTGAAARIAQHETDHLDGVMHFQHLPLAERGVLLAEYEAL 164 >gi|19552813|ref|NP_600815.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|62390483|ref|YP_225885.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|145295722|ref|YP_001138543.1| peptide deformylase [Corynebacterium glutamicum R] gi|25452910|sp|Q8NQ46|DEF1_CORGL RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|21324370|dbj|BAB98994.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC 13032] gi|41325820|emb|CAF21609.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032] gi|140845642|dbj|BAF54641.1| hypothetical protein [Corynebacterium glutamicum R] Length = 169 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 9/159 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + + +F DP+L VSR E ++ D + LID+M + M G+GLAA Q+GVL R+ Sbjct: 1 MAVREVRLFGDPVL--VSRADEVVDFDESLSTLIDDMFDTMEDAGGVGLAANQVGVLRRV 58 Query: 59 VVIDLQDHAHRKNPMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V D +H++ + INP ++D +EGCLSIPD A+ R + + D Sbjct: 59 FVFDT---SHQEGGLRGHVINPVWEPLTEDTQTGKEGCLSIPDVSAETTRYETVRLSGQD 115 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A+GLLA C+QHE DHL+G+LF+ L +R Sbjct: 116 RDGNPVGFVANGLLARCIQHETDHLDGVLFLKRLDPAER 154 >gi|295706332|ref|YP_003599407.1| peptide deformylase [Bacillus megaterium DSM 319] gi|294803991|gb|ADF41057.1| peptide deformylase [Bacillus megaterium DSM 319] Length = 157 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+ +L + ++ ++ + L++ M ++M DG+GLAA Q+GVL ++ V Sbjct: 1 MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + INP II + + EGCLS P DV R+ ++ VR + + Sbjct: 61 VDVDD---RHGKIELINPVIIEQRGE-QIGPEGCLSFPGLFGDVARADYVKVRAQNRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A G LA +QHE+DHL+G+LF + +++ Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148 >gi|300781120|ref|ZP_07090974.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] gi|300532827|gb|EFK53888.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] Length = 176 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 12/165 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ IF DP+L + I+ + + L+ +MLE M + G+GLAA QIG+ R+ V Sbjct: 1 MTVRPIRIFGDPVLNSEATRIDTFDEALRTLVSDMLETMDAAGGVGLAANQIGLTKRIFV 60 Query: 61 IDLQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D N M INP D + EGCLSIP +A+V+R + R D Sbjct: 61 YDC-------NGMRGALINPVWEPIDDYVQIGPEGCLSIPGIQAEVERHENVIARGQDEF 113 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + I +GLLA C+QHE DHL+G+LF L RL+ ++ + M+ Sbjct: 114 GRPVAIRGNGLLARCIQHETDHLDGVLF---LRRLEPEVRKEAMA 155 >gi|62184939|ref|YP_219724.1| peptide deformylase [Chlamydophila abortus S26/3] gi|81312889|sp|Q5L6G8|DEF_CHLAB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62148006|emb|CAH63757.1| peptide deformylase [Chlamydophila abortus S26/3] Length = 184 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 6/157 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + L + P LRR + I +I +I L +M E M + G+GLAA Q+G L V+ + Sbjct: 3 RELEYYGSPTLRRKAEAILEITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVSLFVMCV 62 Query: 64 QDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + + P V+INP + S+D + +EGCLSIP RADV R ITV+ ++ Sbjct: 63 EGETEDGDLIFCDFPKVYINPVLSNVSEDLVLGREGCLSIPGLRADVYRPRSITVKAINL 122 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + Q + +G A + HE DHLNGIL+ID + K Sbjct: 123 DGQEFTEHLEGFPARIVMHENDHLNGILYIDKMEEPK 159 >gi|302384945|ref|YP_003820767.1| peptide deformylase [Clostridium saccharolyticum WM1] gi|302195573|gb|ADL03144.1| peptide deformylase [Clostridium saccharolyticum WM1] Length = 151 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 7/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + F D LR S+P+E++N I ++D+M E +++T +G LAA Q+G+L RLV Sbjct: 1 MALREIRTFDDNELRLKSKPVEQVNDRIRMILDDMAETLHNTPNGGALAANQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D + INP +I +S+ E CLS P V+R + V+ +D N Sbjct: 61 VIDLGDGVRK-----LINP-VILWSEGEQFEPEACLSFPGLWGKVRRPKSVVVKALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + I A +A CL HE+DHL+GI+F D Sbjct: 115 CERKIKASDFMAKCLCHEIDHLDGIVFTD 143 >gi|227503564|ref|ZP_03933613.1| peptide deformylase [Corynebacterium accolens ATCC 49725] gi|227075600|gb|EEI13563.1| peptide deformylase [Corynebacterium accolens ATCC 49725] Length = 171 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + ++ DP+L + I +S + L NML+ M + G+GLAA Q+G+L R+ V Sbjct: 1 MAELDIRLYGDPVLSSRAEEITTFDSSLRTLAQNMLDTMDAAGGVGLAANQVGILKRIFV 60 Query: 61 IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D A + V INP +D V EGCLSIP AD R + V D Sbjct: 61 YDCSPIQAGLRG--VLINPVWTPLGEDMQVGPEGCLSIPGISADTPRHNRVFVSGRDVEG 118 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + A GLLA C+QHE DHL+G+LF+ L R Sbjct: 119 RPVGMVASGLLARCIQHETDHLDGVLFLRRLGDADR 154 >gi|56419706|ref|YP_147024.1| peptide deformylase [Geobacillus kaustophilus HTA426] gi|56379548|dbj|BAD75456.1| polypeptide deformylase [Geobacillus kaustophilus HTA426] Length = 157 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V+ P+PIL + P+ + + L+D+M E M + DG+GLAA QIGV ++ V+D+ D Sbjct: 6 IVMHPNPILEQPCAPVTIFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQVAVVDVGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R + INP +I + V EGCLS P +V R+ F+ VR + + + Sbjct: 66 EHGR---IELINPVVIEARGE-QVDVEGCLSFPGLFGEVPRAKFVKVRAQNRRGRPFTLS 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A G LA LQHE+DHL+G+LF + R Sbjct: 122 ATGFLARALQHEIDHLHGVLFTSKVIR 148 >gi|227549209|ref|ZP_03979258.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] gi|227078663|gb|EEI16626.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] Length = 166 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 7/156 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+L P+ + + + L+ ++L M G+GLAA Q+GV R+ V Sbjct: 1 MAVRPIRLFGDPVLNSAVAPVTRFDEALRVLVCDLLNTMDDAGGVGLAANQVGVDARVFV 60 Query: 61 IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D Q H INP + D+ + +EGCLS+P V R + R +D + Sbjct: 61 FDCQGMRGH------IINPSWASAGDEVQIGREGCLSVPGISGPVSRYNRVVARGVDADG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + I GLLA C+QHE DHL+GI+F+ + R Sbjct: 115 RPLAISGTGLLARCIQHESDHLDGIMFMRRMDSAAR 150 >gi|239917583|ref|YP_002957141.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|281413931|ref|ZP_06245673.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|239838790|gb|ACS30587.1| peptide deformylase [Micrococcus luteus NCTC 2665] Length = 191 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 78/150 (52%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ PDP+LR + P+ +D+ L+ +M+ M++ G+GLAA Q+GV R+ V Sbjct: 1 MTVLPVRTVPDPVLRTAASPVPA-GADVRALVADMIATMHAVGGVGLAAPQVGVGLRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ A +NP + T EGCLS+P R R A VR D + Sbjct: 60 FDVAGVAGH-----VVNPVLETAGQALREPGEGCLSVPGLRYHPARDAEAVVRGTDVDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 GLLA CLQHE DHL+GIL++D L Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRL 144 >gi|89052958|ref|YP_508409.1| formylmethionine deformylase [Jannaschia sp. CCS1] gi|88862507|gb|ABD53384.1| formylmethionine deformylase [Jannaschia sp. CCS1] Length = 161 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 3/150 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++++PDP+L S + + + LI ++ + MY+ G GLAA QIGVL R+ V+D+ Sbjct: 6 VLLWPDPLL---SVVCDAVVAVDPELIKDLFDTMYAAKGRGLAAPQIGVLQRVFVVDVTW 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++P VFINP + +D +E CLSIPD V R +T+ + + Sbjct: 63 KEGARDPRVFINPVVRDSGEDMRSMEEQCLSIPDLPMQVTRPTTLTLDWETPEGRKTTGT 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 DG LA C+ HELDHL+G + DH S +R Sbjct: 123 FDGNLARCILHELDHLDGTVIFDHQSPARR 152 >gi|291536618|emb|CBL09730.1| peptide deformylase [Roseburia intestinalis M50/1] Length = 158 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+L + R I ++ I LID+ML+ MY +G+GLA Q+GVL R+VV Sbjct: 1 MALRTIRIQGDPVLTKKCREINEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP I+ S + EGCLS+P V R ++ R D N + Sbjct: 61 IDIGE-----GPVVMINPVILEKSGE-QTGDEGCLSLPGKAGTVTRPNYVKARAFDENME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I L+A + HELDHL+G ++ + Sbjct: 115 EYEIEGTELMARAICHELDHLDGHMYTE 142 >gi|94986391|ref|YP_605755.1| peptide deformylase [Deinococcus geothermalis DSM 11300] gi|94556672|gb|ABF46586.1| Peptide deformylase [Deinococcus geothermalis DSM 11300] Length = 216 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 30/173 (17%) Query: 5 PLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 P+ ++ DP+LRR +RP++ ++ + + + MLE M+ G+GLAA Q+G+ Sbjct: 9 PIRLYGDPVLRRKARPLQATDTLTVPGFGPQSVREVANTMLETMFEARGVGLAAPQVGLP 68 Query: 56 YRLVV---------------IDLQDHAHRKNPMVFINP--KIITFSDDFSVYQEGCLSIP 98 R+ V + L+ R+ V +NP +I D S YQEGCLSIP Sbjct: 69 VRMFVAVEYEDDEEEQEGRDVPLKSRVLRE--FVMLNPVLTVIDKKKDRS-YQEGCLSIP 125 Query: 99 D-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Y V R+ + VRY D + Q + + AD LA QHE DHL+G+ F+D L Sbjct: 126 GIYEEGVARARAVQVRYTDLDGQERTLEADDYLARVFQHETDHLDGVFFLDRL 178 >gi|56698050|ref|YP_168421.1| peptide deformylase [Ruegeria pomeroyi DSS-3] gi|56679787|gb|AAV96453.1| peptide deformylase [Ruegeria pomeroyi DSS-3] Length = 165 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 2/151 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PD L P+E I D +LI +M + MY+ G GLAA Q+GV+ R V+D+ Sbjct: 5 PILTWPDARLSWRCDPVEGIVPD--DLIRDMFDTMYAAKGRGLAAPQVGVMQRFFVMDVG 62 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +PM INP I+ +E CLSIP V R +TV++ + Sbjct: 63 WKEGPPSPMAMINPVIMAAERVPVEMEEVCLSIPGLSVPVTRPKAVTVQWTAPEGDIHMA 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 DG A C+QHE DHLNG++ +DHL R Sbjct: 123 DFDGFEARCIQHEFDHLNGVVTLDHLDPRAR 153 >gi|311748398|ref|ZP_07722183.1| peptide deformylase [Algoriphagus sp. PR1] gi|126576910|gb|EAZ81158.1| peptide deformylase [Algoriphagus sp. PR1] Length = 184 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 87/151 (57%), Gaps = 8/151 (5%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 P+V + +PIL++ + I + + + +I NM M + +G+GLAA QI RL VID Sbjct: 4 PIVAYGNPILKKEADEINE-GTALDEMIQNMFATMDNANGVGLAAPQINEGVRLFVIDSN 62 Query: 63 --LQDHAHRKN-PMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 L + K FINP I+ + DD+S ++EGCLSIPD RA++ R +T+ Y D N Sbjct: 63 LMLDEEDEEKGIRKAFINPIILDEYGDDYS-FEEGCLSIPDVRAEITRPEKLTIEYFDEN 121 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDH 149 G+ A +QHE DHL GILF+D+ Sbjct: 122 WNLHEEEFSGMTARVIQHEYDHLEGILFVDY 152 >gi|254384637|ref|ZP_04999976.1| peptide deformylase 1 [Streptomyces sp. Mg1] gi|194343521|gb|EDX24487.1| peptide deformylase 1 [Streptomyces sp. Mg1] Length = 214 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 3/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ + +P+L R + + + D+ LID+M + +G+GLAA QIGV ++ V D Sbjct: 40 RPITVVGNPVLHRECKDVTEFGEDLARLIDDMFASQKAAEGVGLAANQIGVDAKVFVYDC 99 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ V INPK++ V EGCLS+P A + R + V D Sbjct: 100 PDDDGVRHTGVVINPKLVELPAASRVLDDSNEGCLSVPTAYAALARPDYAEVEGRDAQGN 159 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M + Sbjct: 160 PIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 203 >gi|187932490|ref|YP_001886374.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] gi|187720643|gb|ACD21864.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] Length = 149 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + ++ DPILR+ S+ +E ++ I +++++M E MY+T+ G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLYDDPILRKKSKEVEVVDDKIRDILNDMAETMYNTENGAGLAAPQVGMLKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + INPKII V EGCLS P+ +KR + + ++ N Sbjct: 61 VIDMW-----QGLIKLINPKIIKKEGSQEVI-EGCLSNPNVFGKLKRPYKVIIEALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + G LA C HE+DHL+GILF D ++ Sbjct: 115 EEIQLTGTGDLAKCFCHEIDHLDGILFTDLVTE 147 >gi|254461985|ref|ZP_05075401.1| polypeptide deformylase [Rhodobacterales bacterium HTCC2083] gi|206678574|gb|EDZ43061.1| polypeptide deformylase [Rhodobacteraceae bacterium HTCC2083] Length = 163 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR + + +I ++ + ++++ M + G+G+ A QIGV+ RL V+D + Sbjct: 9 WPDKRLRSKAADVSEITDEVCAVWTDLIDTMEAMPGVGMGANQIGVMLRLAVLDASNE-- 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127 R + NP+I+ S + + E ++P A +KR +TV++M N + I D Sbjct: 67 RGKVIRMANPEILHASAELREHDEASPNLPGVSAVIKRPRAVTVKFM--NDKGIIDRRDF 124 Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL AT +QH++DHLNG L+ DHLSR+KR M+ KK KL Sbjct: 125 VGLWATSVQHQIDHLNGKLYFDHLSRVKRTMLIKKAQKL 163 >gi|329942666|ref|ZP_08291445.1| peptide deformylase [Chlamydophila psittaci Cal10] gi|332287261|ref|YP_004422162.1| peptide deformylase [Chlamydophila psittaci 6BC] gi|313847847|emb|CBY16841.1| peptide deformylase [Chlamydophila psittaci RD1] gi|325507284|gb|ADZ18922.1| peptide deformylase [Chlamydophila psittaci 6BC] gi|328814926|gb|EGF84915.1| peptide deformylase [Chlamydophila psittaci Cal10] gi|328914507|gb|AEB55340.1| peptide deformylase [Chlamydophila psittaci 6BC] Length = 184 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 6/157 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + L + P LRR + I I +I L +M E M + G+GLAA Q+G RL V+ + Sbjct: 3 RELEYYGSPTLRREADAILDITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVRLFVMCV 62 Query: 64 QDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + + P V+INP + S+D + +EGCLSIP RADV R ITV+ ++ Sbjct: 63 EGETEDGDLIFCDFPKVYINPVLSDVSEDLVLGREGCLSIPGLRADVYRPRSITVKAINL 122 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + Q + +G A + HE DHLNG+L+ID + K Sbjct: 123 DGQEFTEHLEGFPARIIMHENDHLNGVLYIDKMEEPK 159 >gi|326202810|ref|ZP_08192677.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] gi|325986887|gb|EGD47716.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] Length = 151 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 83/143 (58%), Gaps = 7/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D +LR+ RP+E++N I +L+ +M + MY T +G GLAA Q+G+L R +VID+ D Sbjct: 11 DEVLRKKCRPVEEVNDKIRDLLKDMADTMYDTGNGAGLAAPQVGILKRAIVIDMGDGL-- 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + +NP+II V EGCLSIP V R + V+ ++ + +I Sbjct: 69 ---INLVNPEIIEQKGSQEVI-EGCLSIPGKWGKVIRPYEVRVKALNEKGEEVVIKGKKE 124 Query: 130 LATCLQHELDHLNGILFIDHLSR 152 +A CL HE+DHL+GILF D ++ Sbjct: 125 MAKCLCHEIDHLDGILFTDKVTE 147 >gi|227517269|ref|ZP_03947318.1| peptide deformylase [Enterococcus faecalis TX0104] gi|229548020|ref|ZP_04436745.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|307270561|ref|ZP_07551859.1| peptide deformylase [Enterococcus faecalis TX4248] gi|307284851|ref|ZP_07565007.1| peptide deformylase [Enterococcus faecalis TX0860] gi|312902126|ref|ZP_07761386.1| peptide deformylase [Enterococcus faecalis TX0470] gi|312905430|ref|ZP_07764544.1| peptide deformylase [Enterococcus faecalis TX0635] gi|312906688|ref|ZP_07765688.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|227075276|gb|EEI13239.1| peptide deformylase [Enterococcus faecalis TX0104] gi|229306896|gb|EEN72892.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|306503110|gb|EFM72367.1| peptide deformylase [Enterococcus faecalis TX0860] gi|306513142|gb|EFM81776.1| peptide deformylase [Enterococcus faecalis TX4248] gi|310627336|gb|EFQ10619.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|310631159|gb|EFQ14442.1| peptide deformylase [Enterococcus faecalis TX0635] gi|311290790|gb|EFQ69346.1| peptide deformylase [Enterococcus faecalis TX0470] gi|315026429|gb|EFT38361.1| peptide deformylase [Enterococcus faecalis TX2137] gi|315146582|gb|EFT90598.1| peptide deformylase [Enterococcus faecalis TX4244] gi|315161200|gb|EFU05217.1| peptide deformylase [Enterococcus faecalis TX0645] gi|315171198|gb|EFU15215.1| peptide deformylase [Enterococcus faecalis TX1342] gi|315577116|gb|EFU89307.1| peptide deformylase [Enterococcus faecalis TX0630] gi|315581154|gb|EFU93345.1| peptide deformylase [Enterococcus faecalis TX0309A] Length = 150 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 4/133 (3%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI++ + + R IN Sbjct: 3 AQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGR---FELIN 59 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 P II S+ EGCLSIP+ V+R+ +TVRY D + + A G LA QHE Sbjct: 60 PVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQHE 118 Query: 138 LDHLNGILFIDHL 150 +DHLNG LFID + Sbjct: 119 IDHLNGELFIDKM 131 >gi|320103814|ref|YP_004179405.1| peptide deformylase [Isosphaera pallida ATCC 43644] gi|319751096|gb|ADV62856.1| peptide deformylase [Isosphaera pallida ATCC 43644] Length = 200 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 2/161 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P P LR S P+ + + ++ I M +MY +GIGLAA Q+ + Y+ ++++ Sbjct: 3 IVPYPHPALRYPSVPVTRFDDELRGQIQAMFALMYENEGIGLAANQVALPYQFFILNISG 62 Query: 66 HAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + VFINP+I+ + +EGCLS P V R I VR D + Sbjct: 63 NPEQTELEQVFINPQILR-KQATAQDEEGCLSFPGLHGKVLRPRRIKVRAWDQYGVPFEL 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA +QHE DHL+G LFID S L R +KK+ Sbjct: 122 EADELLARAIQHEWDHLHGRLFIDKFSTLGRINASKKLKAF 162 >gi|84060919|ref|YP_444131.1| hypothetical protein O2ColV76 [Escherichia coli] gi|3288155|emb|CAA11508.1| hypothetical protein [Escherichia coli] gi|76781994|gb|AAX22071.2| conserved hypothetical protein [Escherichia coli] Length = 149 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/126 (39%), Positives = 86/126 (68%), Gaps = 4/126 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ + IGLAA Q+ + R++VID+ ++ Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYA-ESIGLAATQVDIHQRIIVIDVSEN-- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADG Sbjct: 66 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124 Query: 129 LLATCL 134 LLA C+ Sbjct: 125 LLAICI 130 >gi|320104581|ref|YP_004180172.1| peptide deformylase [Isosphaera pallida ATCC 43644] gi|319751863|gb|ADV63623.1| peptide deformylase [Isosphaera pallida ATCC 43644] Length = 230 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 8/155 (5%) Query: 3 KKPLVIFPDPILRRVSRPIE--KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 ++P++ P LR+ +R +E ++ +D LI +M + + G+GLA QIGV R++ Sbjct: 19 RRPILWLGHPALRQTARVVEPSQLKTDAFRRLIGDMAQTLEDEGGVGLAGPQIGVDQRVI 78 Query: 60 VIDL----QDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + +D + +P+ FINP I+ S EGCLSIP A V R + + Y Sbjct: 79 LAGAFPSERDPSRPNHPVRAFINPVIVARSSQVGAAYEGCLSIPGILARVVRPHAVEIEY 138 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +D NA + + A+G LA LQHE+DHL+G+L +DH Sbjct: 139 LDLNAMPRRLRAEGFLARVLQHEIDHLDGVLIVDH 173 >gi|325195568|emb|CCA28422.1| peptide deformylase putative [Albugo laibachii Nc14] Length = 98 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 48/96 (50%), Positives = 66/96 (68%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 MVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + + A+GLLA Sbjct: 1 MVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAI 60 Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 61 CIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 96 >gi|225021362|ref|ZP_03710554.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii ATCC 33806] gi|224945744|gb|EEG26953.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii ATCC 33806] Length = 169 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 1/155 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + IF DP+L + I + + +L+++M + M + G+GLAA QIGVL R+ V Sbjct: 1 MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMFDTMDAAGGVGLAANQIGVLRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + INP+ ++ + EGCLSIP+ AD +R + V D + Sbjct: 61 FDCTTEEDGMRGHI-INPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I A GL+A C+QHE DHL+G+LF+ L+ +R Sbjct: 120 PLTITASGLMARCIQHETDHLDGVLFLRRLTPERR 154 >gi|160939813|ref|ZP_02087160.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC BAA-613] gi|158437247|gb|EDP15012.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC BAA-613] Length = 161 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +P++ +N M LI++M E MY +G GLAA Q+GVL ++V Sbjct: 1 MAVRQIRIMGDEILTKKCKPVKAMNDRTMELIEDMFETMYQANGCGLAAPQVGVLKQIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D N V INP+ IT +D EGCLS+P V R ++ V+ ++ N + Sbjct: 61 IDVDD----GNQYVLINPE-ITATDGSQTGYEGCLSLPGKSGIVTRPNYVKVKALNENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA + HE HL G ++++ Sbjct: 116 PYELEGEGLLARAICHECAHLEGQMYVE 143 >gi|320451483|ref|YP_004203579.1| peptide deformylase [Thermus scotoductus SA-01] gi|320151652|gb|ADW23030.1| peptide deformylase [Thermus scotoductus SA-01] Length = 191 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-VVIDL 63 P+ ++ DP+LR+ +RP++ + L ++MLE M+ G+GLAA QIG+ R V ++ Sbjct: 4 PIRLYGDPVLRKKARPVQDFQG-LKKLAEDMLETMFEARGVGLAAPQIGLSQRFFVAVEY 62 Query: 64 QDHAH-RKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVR 113 D + P+ V NP +IT + EGCLS+P Y +V R+ I V Sbjct: 63 ADEPEGEERPLRDLARRIYVVANP-VITHREGEVEGLEGCLSLPGLYAEEVPRAERIRVE 121 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 Y D + + + +G +A QHE+DHL+GILF + L + KR+ ++ Sbjct: 122 YQDEEGRPRALELEGYMARVFQHEIDHLDGILFFERLPKAKREAFLEE 169 >gi|172040657|ref|YP_001800371.1| peptide deformylase [Corynebacterium urealyticum DSM 7109] gi|171851961|emb|CAQ04937.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109] Length = 166 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 83/147 (56%), Gaps = 10/147 (6%) Query: 9 FPDPILRRVSRPIEK-INSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64 F DP+LR + +E +SD + L+ +MLE M G+GLAA Q+GV R+ V D + Sbjct: 9 FGDPVLRTPAAEVEADFSSDAALATLVADMLETMDHHGGVGLAANQVGVTKRVFVYDCES 68 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D H INP + ++ EGCLSIP R +V+R+ + +R + + + Sbjct: 69 DRGH------VINPTWESVGEETQTGPEGCLSIPGIRGEVQRAETVRLRGQTLDGELVDM 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 GLLA C+QHE DHL+G+LF+ HLS Sbjct: 123 EVSGLLARCVQHETDHLDGVLFLKHLS 149 >gi|251780966|ref|ZP_04823886.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085281|gb|EES51171.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 149 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/139 (41%), Positives = 85/139 (61%), Gaps = 7/139 (5%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69 DPILR+ S+ +E I+ I +++++M E MY+T+ G GLAA Q+G+L RLVVID+ Sbjct: 11 DPILRKKSKEVEVIDDKIRDILNDMAETMYNTENGAGLAAPQVGILKRLVVIDMW----- 65 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + + INPKII + EGCLS P+ +KR + V+ ++ N + + G Sbjct: 66 QGLIKLINPKIIK-KEGIQEVIEGCLSSPNVFGKLKRPYKVIVQALNENGEEIELIGTGD 124 Query: 130 LATCLQHELDHLNGILFID 148 LA C HE+DHL+GILF D Sbjct: 125 LAKCFCHEIDHLDGILFTD 143 >gi|225569235|ref|ZP_03778260.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM 15053] gi|225162034|gb|EEG74653.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM 15053] Length = 157 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + +L + +P++K+ LI++M + MY G+GLAA Q+GVL R+V Sbjct: 1 MATRKIRELGEEVLTKTCKPVDKLTLRTKVLINDMFDTMYEAYGVGLAAPQVGVLKRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+II S + +EGCLS+P V R ++ VR +D + Q Sbjct: 61 IDVGE-----GPIVLINPEIIETSGE-QTGEEGCLSVPGKYGIVTRPDYVRVRALDEDMQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + + GLLA HE+DHL+G ++++ Sbjct: 115 ERELEGTGLLARAFCHEIDHLDGNMYVE 142 >gi|15807421|ref|NP_296154.1| peptide deformylase [Deinococcus radiodurans R1] gi|23396556|sp|Q9RRQ4|DEF_DEIRA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|6460249|gb|AAF11975.1|AE002073_5 polypeptide deformylase [Deinococcus radiodurans R1] Length = 232 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 92/171 (53%), Gaps = 26/171 (15%) Query: 5 PLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 P+ ++ DPILRR +R + ++ + + D MLE M+ G+GLAA QIG+ Sbjct: 23 PMRLYGDPILRRKARNLTAADTLHVPGFEPQTVREVADTMLETMFEERGVGLAAPQIGLP 82 Query: 56 YRLVVI-----DLQDHAHRKNPM--------VFINP--KIITFSDDFSVYQEGCLSIPD- 99 R+ V D +++ ++ P+ V +NP K+I D S YQEGCLSIP Sbjct: 83 VRMFVAVEYADDEEENEGQETPLRSRVLREYVMLNPVVKVINKKKDKS-YQEGCLSIPGI 141 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Y V R+ + V Y D + Q + I A+ LA QHE DHL+G LF+DHL Sbjct: 142 YEDGVPRARQVRVDYTDLDGQPRSIEAEDYLARVFQHETDHLDGKLFLDHL 192 >gi|225418638|ref|ZP_03761827.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme DSM 15981] gi|225041834|gb|EEG52080.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme DSM 15981] Length = 165 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 5/138 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D ILR+ +P++++ LI++M E MY +G+GLAA Q+G+L +LVVID+ D Sbjct: 13 DEILRKQCKPVKEMTPRTAELIEDMFETMYEANGVGLAAPQVGILRQLVVIDVDD----G 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 N V INP+I+ ++ EGCLS+P V R + V+ ++ + + DGLL Sbjct: 69 NQYVLINPEILE-TEGSQTGSEGCLSVPGKSGTVTRPMHVKVKALNEKLEPYELEGDGLL 127 Query: 131 ATCLQHELDHLNGILFID 148 A + HE+ HL G L++D Sbjct: 128 ARAICHEIAHLRGELYVD 145 >gi|153939969|ref|YP_001391592.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|152935865|gb|ABS41363.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|295319620|gb|ADF99997.1| peptide deformylase [Clostridium botulinum F str. 230613] Length = 150 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + + D ILR+ S+ +E ++ I ++++M + MY+T+ G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLVDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|328955668|ref|YP_004373001.1| peptide deformylase [Coriobacterium glomerans PW2] gi|328455992|gb|AEB07186.1| peptide deformylase [Coriobacterium glomerans PW2] Length = 185 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/148 (39%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V+ PD LRR PIE+I +I L +M + M+ G GLAA Q+G +++VID Sbjct: 6 IVLSPDERLRRECAPIEEITPEIERLASHMKQEMFENAGCGLAAPQVGQTVQMIVIDTS- 64 Query: 66 HAHRK--NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + R+ +P V INP II SD + + EGCLSIP ++ R + V D +A Sbjct: 65 YTSREDYDPYVLINPVIIEQSDRLTAFSEGCLSIPGISCEIYRPDHVVVEAYDLDANLIR 124 Query: 124 IYADG-LLATCLQHELDHLNGILFIDHL 150 A G L+ CLQHE+DHL GI + L Sbjct: 125 YEAAGDLMCVCLQHEIDHLKGITMFERL 152 >gi|229815473|ref|ZP_04445805.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM 13280] gi|229809006|gb|EEP44776.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM 13280] Length = 178 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V+ PDP LR+ +E+INSD+ L++ M M+ G GLAA Q+G +L ++D + Sbjct: 6 IVLSPDPRLRQECAEVEEINSDLRALVERMKVQMFENGGCGLAAPQVGETIQLAIVDTEY 65 Query: 66 HAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + +P V INP I+ SD+ Y EGCLSIP +++R + V + + Sbjct: 66 TSEKDYDPYVLINPVIVEQSDNLVPYNEGCLSIPGINCEIRRPDHVVVEAYNLEGECIRY 125 Query: 125 YADG-LLATCLQHELDHLNGILFIDHLSRLKR 155 A G L CLQHE+DHL+G + L +R Sbjct: 126 EAAGDLFCVCLQHEIDHLHGKTMFERLLPQQR 157 >gi|139436889|ref|ZP_01771049.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC 25986] gi|133776536|gb|EBA40356.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC 25986] Length = 180 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 86/158 (54%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ PDP LR+ IE+I I L + M ++M+ G GLAA QIG L +LV Sbjct: 3 MEANGIVLSPDPRLRQECAVIEEITPAIEALAEKMKKIMFENGGCGLAAPQIGELIQLVT 62 Query: 61 IDLQDHAHRK--NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID D++ + +P V INP I+ SD + EGCLSIP +++R + V D + Sbjct: 63 IDC-DYSDKNDYDPYVLINPVIVEQSDHLVPFSEGCLSIPGISCEIERPDHVVVEAYDLD 121 Query: 119 AQHQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKR 155 A A G L CLQHE+DHL+G + L ++R Sbjct: 122 ANLIRYEATGDLFCVCLQHEIDHLHGNTMFERLKPMQR 159 >gi|239982203|ref|ZP_04704727.1| polypeptide deformylase [Streptomyces albus J1074] gi|291454049|ref|ZP_06593439.1| polypeptide deformylase [Streptomyces albus J1074] gi|291356998|gb|EFE83900.1| polypeptide deformylase [Streptomyces albus J1074] Length = 218 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 3/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ + +P+L R ++ + ++++ L+D+M + +G+GLAA QIGV ++ V D Sbjct: 44 RPITVVGNPVLHRETKDVTVFDAELAQLVDDMFASQRAAEGVGLAANQIGVDKKVFVYDC 103 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ V NP + + V EGCLS+P A++ R + VR D Sbjct: 104 PDDEGARHVGVVCNPVLDELPSERRVLDDSNEGCLSVPTAYAELARPDYAVVRGQDEKGN 163 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 164 PIVVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 207 >gi|153815688|ref|ZP_01968356.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756] gi|317501925|ref|ZP_07960109.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088261|ref|ZP_08337180.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA] gi|145846929|gb|EDK23847.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756] gi|316896605|gb|EFV18692.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA] gi|330408505|gb|EGG87971.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA] Length = 166 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 6/138 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D IL + + + K+ LI +MLE MY ++G+GLAA Q+GVL R+VVID+ + Sbjct: 11 DDILEKQCKAVPKMTLRTKILIGDMLETMYESNGVGLAAPQVGVLKRIVVIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+II S + +EGCLS+P V R + VR D N + +GLL Sbjct: 66 GPIVLINPQIIESSGE-QTGEEGCLSVPGKFGIVTRPDRVKVRAFDENMNEFEMEGEGLL 124 Query: 131 ATCLQHELDHLNGILFID 148 A HELDHL+G L+++ Sbjct: 125 ARAFCHELDHLDGKLYVE 142 >gi|332799422|ref|YP_004460921.1| peptide deformylase [Tepidanaerobacter sp. Re1] gi|332697157|gb|AEE91614.1| Peptide deformylase [Tepidanaerobacter sp. Re1] Length = 154 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 6/140 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ SR + + + LI +MLE M + +G+GLAA Q+G+L R+VVID+ + Sbjct: 9 YGDEVLRKKSRNVTVFDKRLHTLILDMLETMMNANGVGLAAPQVGILKRVVVIDVGE--- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+V +NP+I+ + + EGCLSIP +V R + + V+ D ++ I + Sbjct: 66 --GPIVLVNPEIVESKGEV-IEPEGCLSIPGILGEVPRPSRVKVKAQDKWGKYIEIEGED 122 Query: 129 LLATCLQHELDHLNGILFID 148 LLA L HE+DHL G LF+D Sbjct: 123 LLARALCHEIDHLEGKLFVD 142 >gi|124485018|ref|YP_001029634.1| peptide deformylase [Methanocorpusculum labreanum Z] gi|124362559|gb|ABN06367.1| peptide deformylase [Methanocorpusculum labreanum Z] Length = 162 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 9/160 (5%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 I+ +L +V+ P++ I +++ ++D M+ ++ G+GLAA Q+G+ R V++ D Sbjct: 5 IYGKTVLAQVAEPVDTITPELLAILDEMVPMLKEHRGVGLAAPQVGIGKRFFVMNPGDKV 64 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R INP+I+ + FS +EGCLS+P V+R ITVRY N ++I + Sbjct: 65 RR-----VINPEIMKTGNAFSEMEEGCLSVPGIHKKVRRPRRITVRY--TNEAGELIEEE 117 Query: 128 --GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A HE DHL+GILF+D +S + + MI K++ L Sbjct: 118 LKDYPARVFLHEYDHLDGILFVDRISPIAKKMIAKQLEDL 157 >gi|300790374|ref|YP_003770665.1| polypeptide deformylase [Amycolatopsis mediterranei U32] gi|299799888|gb|ADJ50263.1| putative polypeptide deformylase [Amycolatopsis mediterranei U32] Length = 192 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 16/174 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI +P+L + +R I + + + L+D+M E MY+ +G+GLAA QIG+ R+ V Sbjct: 1 MTIHPIVIAGEPVLHQPTREITEFDEKLRTLVDDMFETMYAAEGVGLAANQIGLDLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS---------DDFSVYQEGCLSIPDYRADVKRSAFIT 111 D D ++ V +NPK+ T DD+ EGCLS P R+ + Sbjct: 61 YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDDDW----EGCLSAPGESYPTGRAKWAK 116 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 V D + + G A CLQHE DHL+G +++D L R R KKM K Sbjct: 117 VTGSDIDGHPIEVEGTGYFARCLQHETDHLDGYIYLDRLVGRHAR--AAKKMLK 168 >gi|227833011|ref|YP_002834718.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] gi|262182501|ref|ZP_06041922.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975] gi|227454027|gb|ACP32780.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] Length = 169 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 1/151 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + ++ DP+L + I + + L +MLE M G+GLAA QIGV R+ V Sbjct: 1 MTVREVRLYGDPVLTTRAEEITEFGPSLERLAQDMLETMEDAGGVGLAANQIGVTKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H V INP+ ++ + EGCLSIP +R + + +R D + Sbjct: 61 FDCSHFQHGLRGAV-INPEWEAVGEEMQLGTEGCLSIPGISQPTERFSTVRLRGYDPQGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A GL+A C+QHE DHL+G+LF+ LS Sbjct: 120 PVSMLASGLMARCIQHETDHLDGVLFLQRLS 150 >gi|154249636|ref|YP_001410461.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1] gi|154153572|gb|ABS60804.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1] Length = 170 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 I DP+LR+ ++P+ + + +I+ MY DG+GLAA Q+G+ R +D D + Sbjct: 5 ILGDPVLRKKAQPVTDF-AQVRAIIEEFKLTMYEQDGVGLAAPQVGISLRFFGMD--DGS 61 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 K + +NP+II S++ + +EGCLS+P ADV R +I VRY D + + + Sbjct: 62 GFK---MIVNPEIIEKSEEKELGEEGCLSVPGVFADVLRHKWIRVRYQDEHGTYHEELLE 118 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G A QHE DHL+G+LFIDHL R + +++ K+++ Sbjct: 119 GYPARIFQHEYDHLDGVLFIDHLDSKTRTALAQQLKKIME 158 >gi|212639617|ref|YP_002316137.1| peptide deformylase [Anoxybacillus flavithermus WK1] gi|212561097|gb|ACJ34152.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1] Length = 151 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 83/144 (57%), Gaps = 4/144 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P PIL V +P+ + ++ L+++M + M + DG+GLAA QIGV ++ ++D+ D Sbjct: 3 YPAPILETVCQPVTVFDRKLIKLLNDMYDTMLAADGVGLAAPQIGVDQQIAIVDIGD--- 59 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R + INP II + + EGCLS P +VKR ++ VR + + I A G Sbjct: 60 RHGRIELINP-IIVAQNGEQIGPEGCLSFPGLFGEVKRFQYVKVRAQNRRGRPFEIEATG 118 Query: 129 LLATCLQHELDHLNGILFIDHLSR 152 LA LQHE+DHL+GILF + R Sbjct: 119 FLARALQHEIDHLHGILFTSKVIR 142 >gi|262091759|gb|ACY25348.1| peptide deformylase [uncultured actinobacterium] Length = 180 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 6/157 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + DP+L ++ I I+ ++ L ++M VMY G+GLA QIGV ++ V D+ D Sbjct: 15 YGDPVLAAMADEITNIDGKLVTLAEDMFRVMYQAPGLGLAGPQIGVQKQIFVYDVDD--- 71 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +P V INPKI+ S ++ VY EGCLSIP ++ R + V I AD Sbjct: 72 --DPQVIINPKIVESSGEW-VYDEGCLSIPGLYVEMLRPKKVLVSGFTLEGDEVQIEADE 128 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 LLA QHE+DHL G+L D + +R++ + +K+ Sbjct: 129 LLARLFQHEIDHLQGVLMFDRMLPDQRELAIVEYAKV 165 >gi|61679585|pdb|1Y6H|A Chain A, Crystal Structure Of Lipdf gi|61679586|pdb|1Y6H|B Chain B, Crystal Structure Of Lipdf gi|75765202|pdb|1SV2|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.5 gi|75765203|pdb|1SV2|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.5 gi|75765298|pdb|1VEV|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph6.5 gi|75765299|pdb|1VEV|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph6.5 gi|75765300|pdb|1VEY|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.0 gi|75765301|pdb|1VEY|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.0 gi|75765302|pdb|1VEZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans(Lipdf) At Ph8.0 gi|75765303|pdb|1VEZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans(Lipdf) At Ph8.0 Length = 177 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 8/152 (5%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DPILR++S P+ E + LI +M + M +G+GLAA QIG+L ++VV+ +D+ Sbjct: 10 DPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNE 69 Query: 68 HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + +NP I + D S + EGCLS+P R V+R I +++MD Sbjct: 70 RYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQF 129 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 DG A QHE DHL GIL++D L K Sbjct: 130 DETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161 >gi|24215138|ref|NP_712619.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601] gi|45657385|ref|YP_001471.1| peptide deformylase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|23396549|sp|Q93LE9|DEF_LEPIN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|59797588|sp|Q72S74|DEF_LEPIC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|14626937|gb|AAK70806.1| peptide deformylase [Leptospira interrogans] gi|24196204|gb|AAN49637.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601] gi|45600624|gb|AAS70108.1| putative polypeptide deformylase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 178 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 8/152 (5%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DPILR++S P+ E + LI +M + M +G+GLAA QIG+L ++VV+ +D+ Sbjct: 11 DPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNE 70 Query: 68 HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + +NP I + D S + EGCLS+P R V+R I +++MD Sbjct: 71 RYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQF 130 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 DG A QHE DHL GIL++D L K Sbjct: 131 DETIDGYKAIVYQHECDHLQGILYVDRLKDTK 162 >gi|326329902|ref|ZP_08196217.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] gi|325952293|gb|EGD44318.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] Length = 204 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 3/167 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ + P++ R + +E + + L +M+ MY+ +G+GLAA QIG + V D Sbjct: 25 RPITRWGTPVMHRPKKQVEVFDDALTELAADMVATMYAAEGVGLAADQIGEDVAIFVFDC 84 Query: 64 QDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D R+ V NP + D V EGCLS P D R + V + + Q Sbjct: 85 PDATGRRTVGVVCNPVLTLPEGDDRHLDVDLEGCLSFPGAFVDCGRPDWAAVDGLGLDGQ 144 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +GLLA CLQHE DH NG +F D +S R +TK+ ++ Q Sbjct: 145 PVHFEGNGLLARCLQHETDHTNGTVFGDRISAKARKKLTKEHDRVAQ 191 >gi|239944168|ref|ZP_04696105.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|239990624|ref|ZP_04711288.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 11379] gi|291447640|ref|ZP_06587030.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291350587|gb|EFE77491.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] Length = 212 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECKDVTAFDDELAQLIDDMFASQKTAEGVGLAANQIGVDLKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D +++ V NP + + + V EGCLS+P A + R + VR D Sbjct: 96 DCPDDDGKRHTGVVCNPVLEELAPEMRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAK 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M + Sbjct: 156 GNPIRVKGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201 >gi|227504404|ref|ZP_03934453.1| peptide deformylase [Corynebacterium striatum ATCC 6940] gi|227199052|gb|EEI79100.1| peptide deformylase [Corynebacterium striatum ATCC 6940] Length = 162 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 1/148 (0%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 ++ DP+L + IEK +S + L ++MLE M + G+GLAA QIG+ R+ V D H Sbjct: 1 MYGDPVLTSRATEIEKFDSSLEALANDMLETMDAAGGVGLAANQIGLTKRIFVYDCS-HF 59 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 INP D EGCLSIPD + +R + V D + A Sbjct: 60 QTGLRGAIINPVWTPLGDKTQDGPEGCLSIPDITENTERYESVVVHGRDVRGNAISMVAS 119 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKR 155 GL+A C+QHE DHL+G+LF+ L+ +R Sbjct: 120 GLMARCIQHETDHLDGVLFLQRLTPERR 147 >gi|237750767|ref|ZP_04581247.1| polypeptide deformylase [Helicobacter bilis ATCC 43879] gi|229373857|gb|EEO24248.1| polypeptide deformylase [Helicobacter bilis ATCC 43879] Length = 171 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 91/149 (61%), Gaps = 5/149 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---QD 65 +P+ ILR +S+ ++ ++ + +D+M E M +G+GLAA+Q+ R+++I++ +D Sbjct: 8 YPNKILRTISKEVQVFDNALHEFLDSMYETMMEHNGVGLAAIQVAKPLRVLIINIPREED 67 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD-CNAQHQII 124 + K ++ I +I ++ ++ EGCLS+P + +V R + I V+Y D H+ I Sbjct: 68 NTQYKEDLLEIINPVILHAEGEILWNEGCLSVPGFYEEVSRFSQIKVKYQDRFGVTHENI 127 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153 + D +A LQHE+DHLNGILF+D L L Sbjct: 128 FND-FMAVALQHEMDHLNGILFVDKLPLL 155 >gi|256374580|ref|YP_003098240.1| peptide deformylase [Actinosynnema mirum DSM 43827] gi|255918883|gb|ACU34394.1| peptide deformylase [Actinosynnema mirum DSM 43827] Length = 195 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 88/174 (50%), Gaps = 16/174 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +RP+++ + ++ LI +M E M + +G+GLAA QIGV RL V Sbjct: 1 MAVHPIRIAGDPVLHNPTRPVDEHDDELRALIADMYETMAAANGVGLAANQIGVDLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITF---------SDDFSVYQEGCLSIPDYRADVKRSAFIT 111 D D + +NP + T DD+ EGCLS P R+++ Sbjct: 61 YDCPDDEGVRRRGEVVNPVLQTSDVPLGMPDPDDDY----EGCLSAPGESYPTGRASWAK 116 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 V D N + G A CLQHE DHL+G L++D L R KR +KKM K Sbjct: 117 VTGTDGNGDPVEVEGTGFFARCLQHETDHLDGYLYLDRLVGRHKR--ASKKMIK 168 >gi|297202274|ref|ZP_06919671.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] gi|197710208|gb|EDY54242.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] Length = 216 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTEFGEELDQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D QD R++ V NPK++ D EGCLS+P A + R + V D Sbjct: 100 DCQDDEGRRHVGVVCNPKLVDLPADRRQLDESNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|239626559|ref|ZP_04669590.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516705|gb|EEQ56571.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 162 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +P++++ M LI++M E MY +G GLAA Q+GVL ++V Sbjct: 1 MAVRQIRIMGDDILTKKCKPVKEMTRRTMELIEDMFETMYEANGCGLAAPQVGVLKQIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D N V INP+II + Y EGCLS+P V R ++ V+ +D N + Sbjct: 61 IDVDDG----NQYVLINPEIIAQDGSQTGY-EGCLSLPGKSGIVTRPNYVKVKALDENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA + HE+ HL G ++++ Sbjct: 116 PFELEGEGLLARAICHEVAHLEGQMYVE 143 >gi|190891919|ref|YP_001978461.1| peptide deformylase [Rhizobium etli CIAT 652] gi|190697198|gb|ACE91283.1| peptide deformylase protein [Rhizobium etli CIAT 652] Length = 164 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ ++ + L D++L M + G+G+ A IGV R++V Sbjct: 1 MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L D A +++NP I S + ++ EG +S+P DV R I RY D + + Sbjct: 61 LEL-DRA--DGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161 >gi|331697237|ref|YP_004333476.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190] gi|326951926|gb|AEA25623.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190] Length = 182 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 10/163 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + ++++ L+ ++ + M+ G GLAA QIGV R+ Sbjct: 1 MSVQPVRLFGDPVLRTPAVEVTTFDAELRKLVADLTDTMHDEGGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ A +NP D+ EGCLSIP R D R + R + + + Sbjct: 61 YDVDGFAGH-----LVNPTFDVVGDEEQTGPEGCLSIPGLRWDCTRHLHVVARGWNVHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + LLA C+QHE DHL+G+LF+D L D T+K++ Sbjct: 116 PVTVEGSELLARCIQHETDHLDGVLFVDRL-----DAETRKLA 153 >gi|327194673|gb|EGE61521.1| peptide deformylase protein [Rhizobium etli CNPAF512] Length = 164 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ ++ + L D++L M + G+G+ A IGV R++V Sbjct: 1 MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L +++NP I S + ++ EG +S+P DV R I RY D + + Sbjct: 61 LEL---GRADGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161 >gi|84500578|ref|ZP_00998827.1| peptide deformylase [Oceanicola batsensis HTCC2597] gi|84391531|gb|EAQ03863.1| peptide deformylase [Oceanicola batsensis HTCC2597] Length = 165 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 93/166 (56%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +PD LR + + + + +M++ M + G+GLAAVQIGV+ RL V Sbjct: 1 MAVRPILRWPDRRLRAAAADVVDVTDAVRATWADMIDTMEAMPGVGLAAVQIGVMQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+++ S + ++E +P A + R +TVR++ NA+ Sbjct: 61 VDAS--GERGQAVRMANPEVLHASVEPRDHEEASPCLPGVSARITRPRAVTVRFL--NAE 116 Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + D GL AT +QH++DHL G ++ D LS++KRDM+ ++ K Sbjct: 117 GAVEERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARK 162 >gi|302037138|ref|YP_003797460.1| peptide deformylase [Candidatus Nitrospira defluvii] gi|300605202|emb|CBK41535.1| Peptide deformylase [Candidatus Nitrospira defluvii] Length = 176 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 59/144 (40%), Positives = 78/144 (54%), Gaps = 4/144 (2%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +PILR+ + P+ E + LID+M E MY GIGLAA Q+G +LVV+D Sbjct: 11 NPILRQKAVPLTPAEIKKASFQQLIDDMFETMYDEPGIGLAAPQVGRSQQLVVMDCPGEG 70 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 V INP I + + EGCLS+ R V R + + V +D NA+ A Sbjct: 71 GFPK-TVLINPTIQFYGPEQVEGWEGCLSVDGLRGKVTRPSTVRVTGLDRNAKPFDFEAS 129 Query: 128 GLLATCLQHELDHLNGILFIDHLS 151 GL A C+QHELDHL G LFID ++ Sbjct: 130 GLYAVCIQHELDHLIGKLFIDRMT 153 >gi|261367360|ref|ZP_05980243.1| peptide deformylase [Subdoligranulum variabile DSM 15176] gi|282570120|gb|EFB75655.1| peptide deformylase [Subdoligranulum variabile DSM 15176] Length = 171 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 7/163 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-V 59 M + +V DPIL++V RP+ K + + L+D+M E + + +G+GLA Q+G++ RL + Sbjct: 1 MALRTIVQDGDPILKKVCRPVTKFDDRLRILLDDMKETLLAANGLGLAGPQVGMMRRLFI 60 Query: 60 VIDLQD------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +D +D + + FINP+I+ SD+ EGCLS P + + RS + V+ Sbjct: 61 CLDERDMPEEVPENYEYKFIEFINPEILELSDEKVELYEGCLSFPGHNGAISRSKHVKVK 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 D + + + AD +LA C+QHE +HL+GI +D + D Sbjct: 121 AQDRHGEWFEMEADDMLARCIQHENNHLDGITIMDLATHFYED 163 >gi|328880868|emb|CCA54107.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712] Length = 187 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 80/161 (49%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + + DP+L P+ ++ L+++M MY+ +G+GLAA Q+GV R+ V D Sbjct: 14 RAMTLLGDPVLHAPCAPVTDFGPELARLVEDMFATMYAANGVGLAANQVGVGLRVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP+++ D EGCLS+P A R V + + Sbjct: 74 PDDEETRHLGHVVNPRLVAADGDVVRGPEGCLSLPGLEAPTPRYDRAVVEGVRLDGTPVR 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G ++ DH++ +R + + + K Sbjct: 134 VEGTGFFARCLQHETDHLEGGVYADHVTGWRRSRLLRAIRK 174 >gi|254485851|ref|ZP_05099056.1| peptide deformylase [Roseobacter sp. GAI101] gi|214042720|gb|EEB83358.1| peptide deformylase [Roseobacter sp. GAI101] Length = 165 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+ LR + + +I DI L D+M+ M + G+GLAA QIGV+ ++ V Sbjct: 1 MTVRKIVPWPNTCLRTAAAEVPEITDDIRALWDDMIATMDAMPGVGLAAPQIGVMLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +++ + NP I+ S + + E ++P A VKR +TVRY+D Sbjct: 61 VDASQARNKR--IRLANPVILDASAILNEHDEASPNLPGVSAKVKRPRGVTVRYLDETGV 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL AT +QH++DHL G ++ D+LS+ +RDM+ +K K Sbjct: 119 VTRRDFVGLEATSVQHQIDHLAGKMYFDNLSKTRRDMLLRKARKF 163 >gi|60117243|gb|AAX14403.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila mojavensis] Length = 134 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 8/130 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V+D+Q Sbjct: 5 PIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFVVDVQ 64 Query: 65 DHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 P + INP+I SD+ + +EGCLSIP+ ++KR ++TV+Y D Sbjct: 65 LETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTVKYKD 124 Query: 117 CNAQHQIIYA 126 + + Q + A Sbjct: 125 LDNEEQTLKA 134 >gi|311898295|dbj|BAJ30703.1| putative polypeptide deformylase [Kitasatospora setae KM-6054] Length = 218 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L R R + + ++ LID+M + MY+ +G+GLAA QIGV ++ V Sbjct: 42 TARPITVVGNPVLHREVRTVTAFDGELSALIDDMFQSMYAAEGVGLAANQIGVDLKVFVY 101 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D H NP++ P DD QEGCLS+P ++ R + V Sbjct: 102 DCPDDEGVRHVGHVVNPVLEELPAGRRALDD---SQEGCLSVPTAYQELARPDYAAVTGQ 158 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D + + G A CLQHE DHL G L+ID LS+ R ++M+ Sbjct: 159 DKDGNPIRVEGTGFFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMA 206 >gi|302536804|ref|ZP_07289146.1| peptide deformylase [Streptomyces sp. C] gi|302445699|gb|EFL17515.1| peptide deformylase [Streptomyces sp. C] Length = 211 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L R + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 35 TSRPITVVGNPVLHRECKDVTEFGDELARLIDDMFASQKTAEGVGLAANQIGVDAKVFVY 94 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V +NPK++ V EGCLS+P A + R + V D Sbjct: 95 DCPDDDGVRHTGVVVNPKLVELPAANRVLDDSNEGCLSVPTAYASLARPDYAEVTGQDAQ 154 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 155 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 200 >gi|325963040|ref|YP_004240946.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469127|gb|ADX72812.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] Length = 194 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 78/150 (52%), Gaps = 9/150 (6%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-H 66 I DP+LR V+ P+ + ++ L+ +M E M DG GLAA Q+GV R+ + Sbjct: 8 IIGDPVLRTVAEPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFTYRIDGVE 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H INP ++ SDDF Q EGCLSIP V+R V +D N + Sbjct: 68 GH------IINP-VLENSDDFQQDQVEGCLSIPGLGFPVRRYRSTRVTGVDMNGNPVTVE 120 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +GLLA C QHE DHL+GIL+ D L R Sbjct: 121 GEGLLARCFQHENDHLDGILYTDRLEGEDR 150 >gi|294678912|ref|YP_003579527.1| peptide deformylase [Rhodobacter capsulatus SB 1003] gi|294477732|gb|ADE87120.1| peptide deformylase-1 [Rhodobacter capsulatus SB 1003] Length = 169 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 90/162 (55%), Gaps = 8/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58 M +P + F D L + P+E I +I + +M++ M + G+GLAA QIGV+ RL Sbjct: 1 MAVRPFIRFDDKRLHTAAAPVEAITDEIRAIWADMVDTMEAMPGQGVGLAAPQIGVMLRL 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 V+D + R ++ NP+++ S + E ++P A + R +TVR++ N Sbjct: 61 AVVDASEA--RGQAILMANPEVLHASGQMREHDEASPNLPGVWATISRPRAVTVRFL--N 116 Query: 119 AQHQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 A +I D L AT +QH++DHLNG ++DHLS LKR M+ Sbjct: 117 AAGEIEERDFVHLWATSVQHQIDHLNGKTYVDHLSMLKRKML 158 >gi|284045178|ref|YP_003395518.1| peptide deformylase [Conexibacter woesei DSM 14684] gi|283949399|gb|ADB52143.1| peptide deformylase [Conexibacter woesei DSM 14684] Length = 167 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 F DP+L+ + + + + D+ I M E+M GIGLAA Q+G L R++V ++ + Sbjct: 7 FGDPVLKSRAMTVSRFDDDLREQIRGMGEIMNDAFGIGLAATQLGKLNRVLVYRVEQDS- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + +NP++ D+ +EGCLS+ DV+R + VR D II A G Sbjct: 66 --PAIALVNPELEWSGDELETAEEGCLSLRGVLVDVERPVHVRVRAQDEQGSTVIIEASG 123 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L A +QHE+DHL+G+L +D SR +R + + + Sbjct: 124 LEARVIQHEMDHLDGVLILDRTSRDQRKQAMRALRE 159 >gi|301167996|emb|CBW27582.1| peptide deformylase [Bacteriovorax marinus SJ] Length = 179 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 9/162 (5%) Query: 1 MVKKPLVIFPDPILRRVS--RPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M K L +P+LR+V+ P E+I + + LI ++ + M GIG+AA QIGV Y+ Sbjct: 1 MAIKDLTKMGNPVLRKVALEYPSEEIGGEKFIKLIKDLEDTMKENGGIGIAAPQIGVSYQ 60 Query: 58 LVVIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + +I L D++ R + + +NP I + EGCLS+P R V R + Sbjct: 61 VAIIQLPDNSERYPDIAKSDQYIVVNPTIEVLDQTEQGFWEGCLSVPGLRGFVHRPRKVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + +++ AQ + + +G LAT QHELDHL G L+ID + L Sbjct: 121 ITFLNDRAQQEELILEGFLATVFQHELDHLFGKLYIDRIKDL 162 >gi|294500984|ref|YP_003564684.1| peptide deformylase [Bacillus megaterium QM B1551] gi|294350921|gb|ADE71250.1| peptide deformylase [Bacillus megaterium QM B1551] Length = 157 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+ +L + ++ ++ + L++ M ++M DG+GLAA Q+GVL ++ V Sbjct: 1 MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + INP II + + EGCLS P DV R+ ++ V + + Sbjct: 61 VDVDD---RHGKIELINPVIIEQRGE-QIGPEGCLSFPGLFGDVARADYVKVHAQNRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A G LA +QHE+DHL+G+LF + +++ Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148 >gi|222148494|ref|YP_002549451.1| peptide deformylase [Agrobacterium vitis S4] gi|221735480|gb|ACM36443.1| peptide deformylase [Agrobacterium vitis S4] Length = 166 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 3/156 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P P+L + + + + +++ D + M + G+G+ A +G L RLV++DL + Sbjct: 8 YPHPLLAKPCQTVTAFDDRLISFADALYNAMRAAPGVGITAAHVGELMRLVILDLPELGG 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R++ ++NP+I++FS + + EG + +P V R IT+RY + + Sbjct: 68 RRD---YVNPEILSFSQNTLDHDEGSVCMPGMTETVTRPRQITLRYQSLDGTVREEELQD 124 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A C+QHE+D L+G+ +I LSRLKRD + KK K Sbjct: 125 FAAICMQHEIDQLDGLFWIQRLSRLKRDRLLKKWQK 160 >gi|213965139|ref|ZP_03393337.1| peptide deformylase [Corynebacterium amycolatum SK46] gi|213952253|gb|EEB63637.1| peptide deformylase [Corynebacterium amycolatum SK46] Length = 193 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 89/170 (52%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++P+ + S++ LI++M E M G+GLAA Q+GV RL V Sbjct: 1 MTIRPIVIAGDPVLHTPTQPVTEDVSELRELIEDMYETMDRAHGVGLAANQVGVGKRLFV 60 Query: 61 IDLQDH---AHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + D HR NP++ + T +D EGCLS+P R+ V Sbjct: 61 YNCPDDDDVWHRGCVINPVLTTSEIPKTMPNDDGSDDEGCLSVPGLSFPTNRAEKAVVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D N + I A G A C+QHE+ HL+G L+ D L+ + M K++ + Sbjct: 121 LDENGEEVRIEATGFFARCMQHEVGHLDGFLYTDCLTGRWKRMAKKEIKR 170 >gi|288940537|ref|YP_003442777.1| peptide deformylase [Allochromatium vinosum DSM 180] gi|288895909|gb|ADC61745.1| peptide deformylase [Allochromatium vinosum DSM 180] Length = 166 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 93/163 (57%), Gaps = 12/163 (7%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ--- 64 PD L++VS P++ + + + I ++ E + G +G+AA Q+ R+V++DL Sbjct: 9 LPDQRLKQVSEPVDSFDQSLRDFIADLEETRLAGPGAVGIAAPQVAHFRRIVILDLSSRP 68 Query: 65 ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 +H H +V INP+I T + F++ +EGCLS+PDY +V R+ I ++ D + Sbjct: 69 KTPNHGH----LVLINPEI-THWEGFAMGREGCLSVPDYTGNVIRATQIRLKAQDADGVE 123 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +G A +QHELDHL+G+LF+D + + D+ +K+ K Sbjct: 124 HQYEMEGFEARAVQHELDHLDGLLFVDRVVSRRTDLYRRKVYK 166 >gi|290968494|ref|ZP_06560033.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L] gi|290781490|gb|EFD94079.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L] Length = 171 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 7/146 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 +P+L+ ++P+ I I L+D+M E MY +G+GLAA QI RL+V+D Sbjct: 28 NPVLKAAAKPVPVITKHIKKLLDDMAETMYKANGVGLAAPQINESLRLIVLD------DG 81 Query: 71 NPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 N ++ INP+I+ S + EGCLS+P Y V R + I V+ ++ + + Sbjct: 82 NGLIELINPEILETSTEMEEDTEGCLSVPGYYGIVSRYSKIKVKALNRRGKTVYYEPEHF 141 Query: 130 LATCLQHELDHLNGILFIDHLSRLKR 155 LA QHE+DHLNGILFI+ +++ Sbjct: 142 LARIFQHEIDHLNGILFIEKAKNIRK 167 >gi|75765204|pdb|1SZZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765205|pdb|1SZZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765206|pdb|1SZZ|C Chain C, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765207|pdb|1SZZ|D Chain D, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765208|pdb|1SZZ|E Chain E, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765209|pdb|1SZZ|F Chain F, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765210|pdb|1SZZ|G Chain G, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765211|pdb|1SZZ|H Chain H, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin Length = 177 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 80/152 (52%), Gaps = 8/152 (5%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DPILR++S P+ E + LI +M M +G+GLAA QIG+L ++VV+ +D+ Sbjct: 10 DPILRKISEPVTEDEIQTKEFKKLIRDMFTTMRHAEGVGLAAPQIGILKQIVVVGSEDNE 69 Query: 68 HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + +NP I + D S + EGCLS+P R V+R I +++MD Sbjct: 70 RYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQF 129 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 DG A QHE DHL GIL++D L K Sbjct: 130 DETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161 >gi|257414230|ref|ZP_04745678.2| peptide deformylase [Roseburia intestinalis L1-82] gi|257200762|gb|EEU99046.1| peptide deformylase [Roseburia intestinalis L1-82] gi|291541040|emb|CBL14151.1| peptide deformylase [Roseburia intestinalis XB6B4] Length = 163 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+L + R I ++ I LID+ML+ MY +G+GLA Q+GVL R+VV Sbjct: 6 MALRTIRIQGDPVLTKKCREITEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP I+ S + EGCLS+P V R ++ D N + Sbjct: 66 IDIGE-----GPVVMINPVILEKSGE-QTGDEGCLSLPGKAGTVTRPNYVKAHAFDENME 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I L+A + HELDHL+G ++ + Sbjct: 120 EYEIEGTELMARAICHELDHLDGHMYTE 147 >gi|46446437|ref|YP_007802.1| peptide deformylase [Candidatus Protochlamydia amoebophila UWE25] gi|46400078|emb|CAF23527.1| putative polypeptide deformylase [Candidatus Protochlamydia amoebophila UWE25] Length = 176 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 5/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K PL + D +LR+ I +IN I L+ +M+E M + DG GLAA Q+ L + Sbjct: 1 MKLPLAYYGDSVLRKKGSQIAEINDTIKQLVQDMIETMEANDGCGLAAPQVHQSLSLFIT 60 Query: 62 DLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + + VFINPKI+++S + QE CLSIP R V R +T++ D Sbjct: 61 CIPQYLENDQVIPGQVRVFINPKILSYSQEVWACQEACLSIPGMRETVSRPLKVTIQATD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 N G A + HE DH+NG+L+ID L ++ I K Sbjct: 121 LNGHTFTEEFAGFDAHVIMHENDHVNGVLYIDRLPSKRKKGIEK 164 >gi|226357360|ref|YP_002787100.1| peptide deformylase [Deinococcus deserti VCD115] gi|226319350|gb|ACO47346.1| putative peptide deformylase (polypeptide deformylase) (PDF) [Deinococcus deserti VCD115] Length = 220 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 87/173 (50%), Gaps = 30/173 (17%) Query: 5 PLVIFPDPILRRVSRPIEKIN---------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 P+ ++ DP+LRR +RP++ + + + D MLE M+ G+GLAA Q+G+ Sbjct: 12 PIRLYGDPVLRRKARPLQHTDMLTVPGFDPQTVRQVADTMLETMFEARGVGLAAPQVGLP 71 Query: 56 YRLVV---------------IDLQDHAHRKNPMVFINP--KIITFSDDFSVYQEGCLSIP 98 R+ V L+ R+ V +NP ++ D S YQEGCLSIP Sbjct: 72 VRMFVAVEYEDDEEENEGQDTPLKSRVLRE--FVMLNPVLSVLDKKKDRS-YQEGCLSIP 128 Query: 99 D-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Y V R+ I VRY D + + I AD LA QHE DHL+GI F+D L Sbjct: 129 GIYEEGVSRARAIQVRYTDLDGAQRTIQADDYLARVFQHEADHLDGIFFLDRL 181 >gi|213428282|ref|ZP_03361032.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 115 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 77/110 (70%), Gaps = 3/110 (2%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ + + Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--N 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRN 115 >gi|167044672|gb|ABZ09343.1| putative Polypeptide deformylase [uncultured marine microorganism HF4000_APKG7H23] Length = 179 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 7/154 (4%) Query: 1 MVKKPLVIFPDPILRRVS---RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +PL PD +LR + R + + + LID M+E M+ +G+G+A+ Q+G YR Sbjct: 1 MAIRPLRYLPDQLLRTKTVSLRARDVQSPAVQRLIDEMIESMHHYNGVGIASNQVGSRYR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + +I Q P V +NP+I + V EGCLS+P Y+ + RS + V +D Sbjct: 61 ICII--QRPEEDAVPFVLVNPRITRREGEREVT-EGCLSLPGYQGGIVRSERVWVTALDR 117 Query: 118 NAQH-QIIYADGLLATCLQHELDHLNGILFIDHL 150 + Q+ GLLA L+HE DHL+G+ FIDHL Sbjct: 118 QGKQVQLRGETGLLAQALEHETDHLDGVAFIDHL 151 >gi|291301355|ref|YP_003512633.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] gi|290570575|gb|ADD43540.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] Length = 173 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 10/146 (6%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD------H 66 +L R R + + ++ L+D+M MY+ +G+GLAA QIGV R+ VID +D + Sbjct: 19 VLHRRCRTVTDFDDELARLVDDMFASMYAANGVGLAANQIGVDARVFVIDCRDDDGGRLY 78 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 H NP + P + +V EGCLS+P ADV R+ TV D + + + Sbjct: 79 GHIVNPTLREEPP----PRELNVGPEGCLSVPGQYADVARTQTATVDGFDKTGKPITLTS 134 Query: 127 DGLLATCLQHELDHLNGILFIDHLSR 152 G A CLQHE DHLNGI+++D L + Sbjct: 135 TGEAARCLQHETDHLNGIVYVDKLPK 160 >gi|303243293|ref|ZP_07329698.1| peptide deformylase [Acetivibrio cellulolyticus CD2] gi|302589164|gb|EFL59007.1| peptide deformylase [Acetivibrio cellulolyticus CD2] Length = 186 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 6/153 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYR 57 + K + D LR SR I+K ++ I ++ E +Y S G+GLAA Q+GV R Sbjct: 9 INKSIFGLRDISLRNPSRQIQKEELREQWFIDFIKDLFETLYYSPTGVGLAAPQVGVHIR 68 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 LV ID+ KNP INP +D + E CLS+P + V+R I + Y D Sbjct: 69 LVAIDMDRDG--KNPFPLINPTYEAVNDSIVLSNESCLSVPGFVGKVQRHEKIKLTYWDV 126 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 N + +Y +G A +QHE+DHLNG+L+ID + Sbjct: 127 NGEEIELYVEGFKAKVIQHEIDHLNGVLYIDRI 159 >gi|312197386|ref|YP_004017447.1| peptide deformylase [Frankia sp. EuI1c] gi|311228722|gb|ADP81577.1| peptide deformylase [Frankia sp. EuI1c] Length = 205 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 19/180 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ + DP+LR + P+ + + L+D+M+E MY+ G+GLAA Q+GV RL V Sbjct: 1 MTVLPIRVLGDPVLRTPAGPVTVFDDRLRRLVDDMIETMYAAPGVGLAAPQVGVGLRLFV 60 Query: 61 IDLQDHAHR------------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 D +R + P V NP ++ QEGCLSIP Sbjct: 61 FDTDWQPNRPDRHEDDAVPEAAGRARGRAPRVVANP-VLELGPGEQNDQEGCLSIPGLHY 119 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 R+A TVR +D GLLA CLQHE DHL G L++D L+ L R + + Sbjct: 120 ATARAAAATVRGVDAAGDPVEYAGTGLLARCLQHEADHLAGTLYVDRLTGLTRRSAQRAL 179 >gi|168180956|ref|ZP_02615620.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|182668254|gb|EDT80233.1| peptide deformylase [Clostridium botulinum NCTC 2916] Length = 178 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 8/155 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ F D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQFGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 IDL++ + P++ INPK FS +EGCLS P Y V R + + ++ Sbjct: 83 IDLRNG---QEPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEK 136 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A GLL HE DHL+GI++ID ++ Sbjct: 137 GEEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 171 >gi|325283926|ref|YP_004256467.1| Peptide deformylase [Deinococcus proteolyticus MRP] gi|324315735|gb|ADY26850.1| Peptide deformylase [Deinococcus proteolyticus MRP] Length = 220 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 26/173 (15%) Query: 5 PLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 P+ ++ DP+LRR +RP++ ++ + + D MLE M++ G+GLAA Q+G+ Sbjct: 9 PIRLYGDPVLRRKARPLQHTDTLQVPGFAPQTLREVADTMLETMFAARGVGLAAPQVGLG 68 Query: 56 YRLVVI-----DLQDHAHRKNPM--------VFINPK--IITFSDDFSVYQEGCLSIPD- 99 R+ V + +++ ++ P+ V +NPK +I D S EGCLSIPD Sbjct: 69 VRMFVAVEYDDNEEENEGKETPLKSRVLREYVMLNPKLTVINKKKDKS-ETEGCLSIPDI 127 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y V R+ + V Y D Q Q + A+ LA QHE DHL+G LF+DHL + Sbjct: 128 YEEGVPRARAVRVDYTDLEGQAQTVEAEDYLARVFQHENDHLDGKLFLDHLPQ 180 >gi|186686636|ref|YP_001869832.1| peptide deformylase [Nostoc punctiforme PCC 73102] gi|186469088|gb|ACC84889.1| peptide deformylase [Nostoc punctiforme PCC 73102] Length = 190 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 7/163 (4%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++ +P LR+ + +E I + I LI++++ + +G+G+AA Q+ YRL ++ Sbjct: 20 PIIQLGNPTLRQKAVWVENIQDKHIQKLIEDLIATVAKANGVGIAAPQVAQSYRLFIVAS 79 Query: 64 QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + +A N P INPKII S + EGCLS+P R V R I V Y DC Sbjct: 80 RPNARYPNAPEMEPTAMINPKIIAHSTEVVKDWEGCLSVPGIRGLVPRYKSIEVEYTDCQ 139 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 Q +A QHE DHL+GI+F+D L DMIT++ Sbjct: 140 GNLQKQELTDFIARIFQHEYDHLDGIVFVDRLES-TLDMITEQ 181 >gi|308051095|ref|YP_003914661.1| peptide deformylase [Ferrimonas balearica DSM 9799] gi|307633285|gb|ADN77587.1| peptide deformylase [Ferrimonas balearica DSM 9799] Length = 175 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 6/146 (4%) Query: 11 DPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH- 68 +PILR+ +RP+ + ++I L ML M + G+G+AA Q+ RL++I + +A Sbjct: 11 EPILRQRARPVSDATAAEIQTLWQRMLVTMEAAGGVGIAAPQVFEPLRLMIIASRPNARY 70 Query: 69 ----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +P+V INP+I+ S + + EGCLS+P R V+R + VRY+D Q Q + Sbjct: 71 PDAPQMDPVVLINPEILNTSGELVSFVEGCLSVPGIRGTVRRPDNVEVRYLDTQGQPQQL 130 Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150 G A HE DHL G F+D + Sbjct: 131 SLSGFPARIFLHEFDHLEGRTFLDQV 156 >gi|159900945|ref|YP_001547192.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] gi|159893984|gb|ABX07064.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] Length = 211 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 15/172 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID--LQDHAHRK 70 +LR ++ I + + L+D+M+E M G+G+AA Q+GV R+VVI+ Q H Sbjct: 17 VLRAKAKRITSFDQSLAGLVDDMIETMREARGVGIAAPQVGVSRRVVVIEEPAQYEEHED 76 Query: 71 NPM---------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 V +NP+II S++ + QEGCLS+P V R+ ++T++Y D + Sbjct: 77 GTQTQIAPAVLYVMVNPEIIKASEETHMLQEGCLSLPGRYTKVPRNKWVTIKYYDLKGRE 136 Query: 122 Q----IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q I D + QHELDHL+GI+F D ++ + + +K S+ +L+ Sbjct: 137 QRLRHIPAEDYKVGHIAQHELDHLDGIMFTDRMTEESKLVDYRKESESARLK 188 >gi|306836177|ref|ZP_07469161.1| peptide deformylase [Corynebacterium accolens ATCC 49726] gi|304567898|gb|EFM43479.1| peptide deformylase [Corynebacterium accolens ATCC 49726] Length = 184 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 3/156 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + ++ DP+L + I ++ + L MLE M + G+GLAA Q+G+L R+ V Sbjct: 1 MAELDIRLYGDPVLSSRAEEITTFDTGLRTLAQTMLETMDAAGGVGLAANQVGILKRIFV 60 Query: 61 IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D A + V INP +D EGCLSIP AD R + V D Sbjct: 61 YDCSPIQAGLRG--VLINPVWTPLGEDMQTGPEGCLSIPGISADTPRYNRVFVSGRDVEG 118 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + A GLLA C+QHE DHL+G+LF+ L R Sbjct: 119 RPVGMVASGLLARCIQHETDHLDGVLFLRRLGDADR 154 >gi|288918232|ref|ZP_06412587.1| peptide deformylase [Frankia sp. EUN1f] gi|288350402|gb|EFC84624.1| peptide deformylase [Frankia sp. EUN1f] Length = 183 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 6/158 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-IDLQDH 66 + DP+LR V+ P+ + ++ L+D++ E M G+GLAA Q+GV R+ +D D Sbjct: 8 LLGDPVLRTVADPVATFDRELRRLVDDLAETMNEAGGVGLAAPQLGVSLRVFTYLDDSDE 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 +NP + FS++ +EGCLS+P D++R + + + I Sbjct: 68 VGH-----LVNPVLGPFSEEMMDGEEGCLSLPGLSFDLRRPERVLAVGQNVHGDPVTIEG 122 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G+L+ CLQHE DHL+GILFID L + + K + + Sbjct: 123 SGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIRE 160 >gi|269956930|ref|YP_003326719.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] gi|269305611|gb|ACZ31161.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] Length = 164 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 8/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I I+ + +L+ ++LE + + GLAA QIGV R Sbjct: 4 MAMREIRVIPDPVLRTPCDEITTIDDRVRSLVADLLETVDAEGRAGLAANQIGVNLRAFS 63 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ D +NP+I+ D+ EGCLS+P R+A+ V +D + Sbjct: 64 WNIDDEVG-----YVLNPRIVALGDELQDGDEGCLSVPGLWYPTTRAAYARVEGIDLDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++ GL+A CLQHE DHL+G L++D RL+R + + M +L Sbjct: 119 PVVVEGAGLMARCLQHECDHLDGKLYLD---RLERSVRVRAMREL 160 >gi|25029133|ref|NP_739187.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|259505872|ref|ZP_05748774.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|39931150|sp|Q8FMD0|DEF2_COREF RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|23494420|dbj|BAC19387.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314] gi|259166546|gb|EEW51100.1| peptide deformylase [Corynebacterium efficiens YS-314] Length = 193 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 9/163 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L +R + + S++ LI +M E M +G+GLAA QIGV R+ V Sbjct: 1 MTVRPIVIHGDPVLHNPTREVTEPISELQELIADMYETMEVANGVGLAANQIGVSKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITF-------SDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + D + FINP + T +DD S +EGCLS+P R+ + V Sbjct: 61 FNCPDDEGTMHRGCFINPVLETSEIPETMPADDGS-DEEGCLSVPGEGFPTGRADWAKVT 119 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 ++ + + + G LA C QHE+ HL+G+++ D L R KR Sbjct: 120 GLNEDGEEWSMEGTGFLARCFQHEVGHLDGVVYTDTLIGRWKR 162 >gi|300854550|ref|YP_003779534.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300434665|gb|ADK14432.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 150 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 7/146 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHA 67 D ILR+ R +EK++ I+ L+ +M + +++T+ G +AA Q+GVL R VVID+ + Sbjct: 9 LGDEILRKKCRAVEKVDDRILTLLKDMADTLHNTENGAAIAAPQVGVLRRAVVIDMGE-- 66 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + +NP+II V EGCLSIP+ + R A + V+ ++ + I + Sbjct: 67 ---GIICLVNPEIIEEEGSQEVI-EGCLSIPNKWGKLIRPAKVKVKALNEKGEEFTITGE 122 Query: 128 GLLATCLQHELDHLNGILFIDHLSRL 153 G LA CL HE++HL+GILFID ++ Sbjct: 123 GDLAKCLCHEIEHLDGILFIDKVTEF 148 >gi|302530616|ref|ZP_07282958.1| polypeptide deformylase [Streptomyces sp. AA4] gi|302439511|gb|EFL11327.1| polypeptide deformylase [Streptomyces sp. AA4] Length = 188 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 17/173 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I +P+L + +R I + + + L+++M E MY+ +G+GLAA QIG+ R+ V Sbjct: 1 MTVHPICIAGEPVLHQPTREITEFDDKLAALVEDMFETMYAAEGVGLAANQIGLDLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS---------DDFSVYQEGCLSIPDYRADVKRSAFIT 111 D D ++ V +NPK+ T DD+ EGCLS P R+ + Sbjct: 61 YDCPDDEGVEHKGVVVNPKLETSEIPETMPDPDDDW----EGCLSAPGESYPTGRAKWAK 116 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMITK 160 V D + G A CLQHE DHL+G +++D L +R + M+ K Sbjct: 117 VTGFDVEGNPIEVEGTGYFARCLQHETDHLDGFIYLDRLVGRHARAAKKMLKK 169 >gi|330880564|gb|EGH14713.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 169 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 90/163 (55%), Gaps = 12/163 (7%) Query: 10 PD-PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 PD P+LR+VS ++K N ++ L+D+M E M +G+GLAA QIGV R++VI+ + Sbjct: 8 PDAPLLRKVSAQVDKFSNGELRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIEFSGNE 67 Query: 68 HRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R P V INP +IT + +EGC S+P V R A I D + + Sbjct: 68 ERAPGESPVPPTVLINP-VITSGVGRTEGREGCFSVPGKIGIVPRYATIEYTAQDMDGLN 126 Query: 122 QIIYADGLLATCLQHELDHLNGILFID---HLSRLKRDMITKK 161 A+G A +QHE+DHLNGIL+ID +S +R+ I K Sbjct: 127 VRGKAEGFHARIIQHEVDHLNGILYIDIASEVSLYQREPIASK 169 >gi|163790824|ref|ZP_02185249.1| peptide deformylase [Carnobacterium sp. AT7] gi|159873892|gb|EDP67971.1| peptide deformylase [Carnobacterium sp. AT7] Length = 164 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 87/146 (59%), Gaps = 4/146 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PDP+L ++ + +I +I+ L+++M E M + DGIG+AA Q+ RL ++++ Sbjct: 5 PILKYPDPMLITPTKEVTEITDEIVQLLEDMYETMVANDGIGIAAPQVNSNLRLAIVEID 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + INP+I+ + + ++ EGCLS P+ +KR+ I +RY D N + Sbjct: 65 EESGLYE---MINPRIVHATGE-TIDVEGCLSFPEVFGTIKRADTIVLRYYDRNGDEFEV 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150 AD L+ QHEL+HL+G LF D + Sbjct: 121 EADDYLSRAFQHELEHLDGKLFTDKI 146 >gi|294628122|ref|ZP_06706682.1| peptide deformylase [Streptomyces sp. e14] gi|292831455|gb|EFF89804.1| peptide deformylase [Streptomyces sp. e14] Length = 213 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 82/161 (50%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL + D L R + + ++ L++++ MY+ G+GLAA Q+G+ R+ V D Sbjct: 39 RPLTLLGDAALAAPCREVTEFGPELAALVEDLFATMYAARGVGLAANQVGLDLRVFVYDC 98 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP+++ EGCLS+P A V+R V + Sbjct: 99 PDDEDVRHLGHLVNPRLVAADGLLFRGPEGCLSLPGLEAGVERHDHAVVEGFTVAGEPVT 158 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL+G L++DHL+ +R + ++ ++ Sbjct: 159 VEGTGFFARCLQHECDHLDGRLYVDHLTGWRRRKVLRQAAR 199 >gi|85705032|ref|ZP_01036132.1| peptide deformylase [Roseovarius sp. 217] gi|85670354|gb|EAQ25215.1| peptide deformylase [Roseovarius sp. 217] Length = 164 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + P+ +I L D M+ VM + G+GLAA Q+G + L V Sbjct: 1 MAPRACLRWPDKRLRMAAAPVTEITDATRALWDEMVAVMEAMPGVGLAATQLGEMQALAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+I+ S + E +P A ++R +TVR+++ + + Sbjct: 61 VDAS--TARGQAVRMANPEILHASVQLRPHDEASPCLPGVSAMIERPRGVTVRFLNADGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL G ++ D LS +KRDM+ ++ K+ Sbjct: 119 DEERDFVGLWATSVQHQIDHLQGRMYFDRLSTVKRDMLLRRARKI 163 >gi|229547451|ref|ZP_04436176.1| peptide deformylase [Enterococcus faecalis TX1322] gi|307276655|ref|ZP_07557773.1| peptide deformylase [Enterococcus faecalis TX2134] gi|229307483|gb|EEN73470.1| peptide deformylase [Enterococcus faecalis TX1322] gi|306506765|gb|EFM75917.1| peptide deformylase [Enterococcus faecalis TX2134] gi|315028353|gb|EFT40285.1| peptide deformylase [Enterococcus faecalis TX4000] gi|315144145|gb|EFT88161.1| peptide deformylase [Enterococcus faecalis TX2141] gi|315159377|gb|EFU03394.1| peptide deformylase [Enterococcus faecalis TX0312] Length = 150 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 4/133 (3%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI++ + + IN Sbjct: 3 AQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGH---FELIN 59 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 P II S+ EGCLSIP+ V+R+ +TVRY D + + A G LA QHE Sbjct: 60 PVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQHE 118 Query: 138 LDHLNGILFIDHL 150 +DHLNG LFID + Sbjct: 119 IDHLNGELFIDKM 131 >gi|300934519|ref|ZP_07149775.1| peptide deformylase [Corynebacterium resistens DSM 45100] Length = 163 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 82/160 (51%), Gaps = 10/160 (6%) Query: 9 FPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-Q 64 F DP+LR V+ PI S + L+ +MLE M G+GLAA Q+GV R+ V D Sbjct: 4 FGDPVLRTVADPIAPAQVGESSVRTLVADMLETMDHYGGVGLAANQVGVTKRVFVYDCDG 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D H INP+ D+ EGCLS+P V R+ + V + + + Sbjct: 64 DRGH------IINPEWQRIGDEEQTGPEGCLSVPGIGGTVTRAMRVRVTGLTVDGEPIDR 117 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LLA C+QHE DHLNGI+F+ HLS +R K++ + Sbjct: 118 EVTELLARCVQHETDHLNGIMFLKHLSSEERKEAMKEIRQ 157 >gi|229541139|ref|ZP_04430199.1| peptide deformylase [Bacillus coagulans 36D1] gi|229325559|gb|EEN91234.1| peptide deformylase [Bacillus coagulans 36D1] Length = 161 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 4/141 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P IL + + S + ++D M E M DG+GLAA Q+G+ ++ VID D Sbjct: 4 IVKYPAAILEEKCKRVTAFGSSLKAVLDEMYETMLEADGVGLAAPQVGINQQIAVIDTGD 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R + INPKI+T + EGCLS P V R+ ++ V+ D N + I Sbjct: 64 GTGRID---LINPKIVTRRGE-QTDVEGCLSFPGVYGTVSRAHYVKVKAQDANGRAFTIE 119 Query: 126 ADGLLATCLQHELDHLNGILF 146 A+ LA LQHE+DHL+G+LF Sbjct: 120 AEDFLARALQHEIDHLHGVLF 140 >gi|166032719|ref|ZP_02235548.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC 27755] gi|166027076|gb|EDR45833.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC 27755] Length = 156 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + + + K++ LI++ML+ MY G+GLAA Q+GVL R+VV Sbjct: 1 MAIREIRVLGDDVLTKHCKEVTKMSIRTKILIEDMLDTMYEAMGVGLAAPQVGVLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P++ INP+I+ S + +EGCLS+P V R ++ VR +D + Sbjct: 61 IDVGE-----GPIILINPEILETSGE-QTGEEGCLSVPGKCGQVTRPNYVKVRALDEDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA HE+DHL+G +++D Sbjct: 115 EFEMEGEGLLARAFCHEIDHLDGKMYVD 142 >gi|297560923|ref|YP_003679897.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845371|gb|ADH67391.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 2/145 (1%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 ++++ LID+M MY+ +G+GLA Q+GV R+ V D D ++ +NP + Sbjct: 56 SAELAGLIDDMFVTMYAAEGVGLAGSQVGVDLRVFVYDCPDDDGVRHVGHVVNPVLDERD 115 Query: 85 DDFSV--YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 D +V EGCLS+P AD+ R+ TVR +D + ++ G A CLQHE DH Sbjct: 116 PDDAVVVESEGCLSVPGPHADLGRAEHATVRGVDRDGNPVVVSGSGYFARCLQHETDHTL 175 Query: 143 GILFIDHLSRLKRDMITKKMSKLVQ 167 G L++D LS +R + KKM+++ Sbjct: 176 GRLYVDRLSARERKRVLKKMNEMAN 200 >gi|323701801|ref|ZP_08113472.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574] gi|323533337|gb|EGB23205.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574] Length = 151 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 6/150 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V D ILR+ ++P++++ +I+ L+DNM + MY+ G+GLAA QIGV R+VV+D+ D Sbjct: 6 IVEIGDEILRQKAKPVKEVTLNIIKLLDNMADTMYANKGVGLAAPQIGVSKRVVVVDVGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 INP+I+ + + EGCLS+P +V R+ I V+ ++ + Sbjct: 66 GLVE-----LINPEIVEATGSV-IDTEGCLSVPGMIGEVARAERIVVQGLNRKGEQVTYQ 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G LA QHE+DHL+GI+++D L++ Sbjct: 120 AKGFLARAFQHEIDHLDGIIYVDKAKNLRK 149 >gi|210633316|ref|ZP_03297750.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279] gi|210159178|gb|EEA90149.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279] Length = 178 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V+ PDP LR+ +E+IN +++ L++ M + M+ G GLAA Q+G +L +ID + Sbjct: 6 IVLSPDPRLRQECAEVEEINGELIELVERMKDQMFENGGCGLAAPQVGQTIQLAIIDTEY 65 Query: 66 HAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + +P V INP I+ SD+ EGCLSIP ++ R + V + + Sbjct: 66 SSKKDYDPYVLINPVIVEQSDNLVPSSEGCLSIPGINCEILRPDHVVVEAYNLDGDCIRY 125 Query: 125 YADG-LLATCLQHELDHLNGILFIDHLSRLKR 155 A G L CLQHE+DHL+G D L+ +R Sbjct: 126 EAAGDLFCVCLQHEIDHLHGKTMFDRLTPQQR 157 >gi|187778789|ref|ZP_02995262.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC 15579] gi|187772414|gb|EDU36216.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC 15579] Length = 178 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 6/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I+++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAVREILQVGDKTLKRVSKKVECIDDEIKGIIEDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIIT-FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 IDL++ R+ P++ INPK + + S QEGCLS P Y V R + + ++ Sbjct: 83 IDLRN---RQEPIILINPKFLKRIGKEES--QEGCLSYPGYEGIVIRPRRVVIIGLNEKG 137 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A GLL HE DHL+GI++ID ++ Sbjct: 138 EEVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKV 171 >gi|15605076|ref|NP_219861.1| peptide deformylase [Chlamydia trachomatis D/UW-3/CX] gi|76789079|ref|YP_328165.1| peptide deformylase [Chlamydia trachomatis A/HAR-13] gi|166154565|ref|YP_001654683.1| peptide deformylase [Chlamydia trachomatis 434/Bu] gi|166155440|ref|YP_001653695.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802778|ref|YP_002887972.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT] gi|237804700|ref|YP_002888854.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311158|ref|ZP_05353728.1| peptide deformylase [Chlamydia trachomatis 6276] gi|255317459|ref|ZP_05358705.1| peptide deformylase [Chlamydia trachomatis 6276s] gi|255506935|ref|ZP_05382574.1| peptide deformylase [Chlamydia trachomatis D(s)2923] gi|301335828|ref|ZP_07224072.1| peptide deformylase [Chlamydia trachomatis L2tet1] gi|6831532|sp|O84357|DEF_CHLTR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123606946|sp|Q3KM05|DEF_CHLTA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687417|sp|B0B7S2|DEF_CHLT2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687475|sp|B0BBY7|DEF_CHLTB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|3328774|gb|AAC67948.1| Polypeptide Deformylase [Chlamydia trachomatis D/UW-3/CX] gi|76167609|gb|AAX50617.1| peptide deformylase [Chlamydia trachomatis A/HAR-13] gi|83033878|gb|ABB97392.1| polypeptide deformylase [Chlamydia trachomatis] gi|83033880|gb|ABB97393.1| polypeptide deformylase [Chlamydia trachomatis] gi|165930553|emb|CAP04048.1| peptide deformylase [Chlamydia trachomatis 434/Bu] gi|165931428|emb|CAP07002.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273000|emb|CAX09912.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274012|emb|CAX10805.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT] gi|296435872|gb|ADH18046.1| peptide deformylase [Chlamydia trachomatis G/9768] gi|296436798|gb|ADH18968.1| peptide deformylase [Chlamydia trachomatis G/11222] gi|296437732|gb|ADH19893.1| peptide deformylase [Chlamydia trachomatis G/11074] gi|297140231|gb|ADH96989.1| peptide deformylase [Chlamydia trachomatis G/9301] Length = 181 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 6/152 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 L + PILR+V+ P+ +I ++ L+ +M E M G+GLAA Q+G L ++ ++ Sbjct: 5 LEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIMGVER 64 Query: 66 HAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 P VFINP I S+ EGCLSIP R +V R ITV + + Sbjct: 65 ELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAKNLDG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Q + +G LA + HE DHL+G+L+ID +S Sbjct: 125 QQFSLALEGFLARIVMHETDHLHGVLYIDRMS 156 >gi|256372453|ref|YP_003110277.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331] gi|256009037|gb|ACU54604.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331] Length = 164 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 6/143 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ DP+L +R +E I++ + LI++M+ M+ G+GLAA Q+GV RL V D+ Sbjct: 5 PIRTIGDPVLSHRAREVETIDARLDQLIEDMIVTMHEAPGVGLAAPQVGVDLRLFVWDIG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D P V INP+I+ + + Y+EGCLS+P Y ++R + +RY+ + + + Sbjct: 65 D-----GPDVAINPEIVERTGTWR-YEEGCLSVPGYFWPIERPRTVLLRYVTRDGEVAEL 118 Query: 125 YADGLLATCLQHELDHLNGILFI 147 LL QHE DHL+G+L I Sbjct: 119 EGSDLLGRVFQHETDHLDGVLLI 141 >gi|168704063|ref|ZP_02736340.1| peptide deformylase [Gemmata obscuriglobus UQM 2246] Length = 184 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V +P P LR ++P+ I++D+ M+E+MY ++G+GLAA Q+ + Y+++V++ L Sbjct: 3 IVRYPHPALRAKAKPVIAIDADVQKAAAQMVELMYRSEGLGLAAPQVTLDYQMIVLNPLG 62 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +V INP I+ +EGCLS P +V+R +TV++ + + Sbjct: 63 EADQPDQEVVAINPVIVEAKGSTINDREGCLSFPGLYQNVRRYKTVTVKFYNLKGELVQT 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A L A QHE+DHL G LFID + L K + K + Sbjct: 123 TAHDLAARVWQHEIDHLQGTLFIDKMGSLGLSRSQKDLEKFI 164 >gi|297157414|gb|ADI07126.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 209 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 3/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ + +P+L + R + + + + LID+M + +G+GLAA QIGV ++ V D Sbjct: 35 RPITVVGNPVLHKECRDVTEFDDKLAALIDDMFASQKAAEGVGLAANQIGVALKVFVYDC 94 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ V NP + D V EGCLS+P A + R + VR D + Sbjct: 95 PDDDGVRHVGVVCNPVLDELPADRRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAEGK 154 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 155 PIAVQGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 198 >gi|260904911|ref|ZP_05913233.1| peptide deformylase [Brevibacterium linens BL2] Length = 200 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI+ +P+L + + I + ++ LI +M E + +++G+GLAA QIGV R+ V Sbjct: 10 MAIHPIVIYGEPVLHQRAEKITDFDEELATLIADMHETLDASNGVGLAAPQIGVGKRIFV 69 Query: 61 IDLQDH-AHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + +D A + FINP K+ D EGCLS+P +KR+ +TV Sbjct: 70 FNAEDEEAGVRRRGTFINPLLIASKVPDTRPDPVEETEGCLSVPSLDFPLKRADRVTVNG 129 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 +D Q + A+G A +QHE DHL G L++D L + K+ S Sbjct: 130 LDETGQSVSLTAEGWFARIMQHEYDHLQGTLYVDRLDKRWSKKWKKEQS 178 >gi|225848346|ref|YP_002728509.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644275|gb|ACN99325.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] Length = 168 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M K P++ +PD L++ S + + ++ + MY S G+G+AA Q+ R + Sbjct: 1 MEKLPILQYPDERLKKKSIEVVDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNNHIRTI 60 Query: 60 VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++D H+ N MV NPKII + + +++EGC+S+PDY +VKR +I V Sbjct: 61 IVDTSKSTHKTNKVSHGLMVLSNPKII-YGEGEIIFREGCMSVPDYTGNVKRFYYIKVEA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D N + +G A +QHE+DHL+G +FI+ + K D+ +K+ K Sbjct: 120 LDENGKLITFDTEGFEAVVIQHEIDHLDGKVFIEKVVSPK-DIFKRKVYK 168 >gi|255282544|ref|ZP_05347099.1| peptide deformylase [Bryantella formatexigens DSM 14469] gi|255266837|gb|EET60042.1| peptide deformylase [Bryantella formatexigens DSM 14469] Length = 162 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 5/141 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L + + ++++ I LID+M + MY G+GLAA Q+G+L R+VVID + Sbjct: 11 DKVLEKKCKEVKEVTPRIRTLIDDMFDTMYEEGGVGLAAPQVGILKRIVVIDTTG----E 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P V INP I S + Y EGCLS+P V R ++ VR D N Q ++ LL Sbjct: 67 EPHVLINPVIEETSGEQRGY-EGCLSLPGKSGIVTRPNYVRVRAFDENMQEYVLEGTELL 125 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A + HE DHL GI++ + Sbjct: 126 ARAICHECDHLEGIMYTSKVE 146 >gi|302206252|gb|ADL10594.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis C231] gi|302330810|gb|ADL21004.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis 1002] gi|308276494|gb|ADO26393.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis I19] Length = 169 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 1/155 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DP+L + + + ++ NL+ +MLE M + G+GLAA Q+GV R+ V Sbjct: 1 MTIRDIRFFGDPVLTTRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H INP +D + EGCLSIPD + D R + V D + Sbjct: 61 YDCS-HIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A GL++ C+QHE DHL+G+LF+ L + R Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHR 154 >gi|206603587|gb|EDZ40067.1| Polypeptide deformylase [Leptospirillum sp. Group II '5-way CG'] Length = 177 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 90/162 (55%), Gaps = 3/162 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA- 67 + DP L S + +I+ +I +L+ M E++Y GIG+AA Q+G R V D+ A Sbjct: 9 YGDPRLLVKSTEVTRIDQEISDLVRGMFELLYRVPGIGIAAPQVGCNMRFFVFDMNRRAD 68 Query: 68 -HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + P+ INP +I+ + +EGCLS P V+R+ I ++ +D + ++ Sbjct: 69 PGSRTPVTIINP-VISAKEGSITQEEGCLSFPGIFVPVERALRIEIKGVDMEGKDLVLEG 127 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +GL A +QHE+DHL G+L +H++R + + K++ + ++ Sbjct: 128 EGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEIRAIEKI 169 >gi|153955363|ref|YP_001396128.1| Def3 [Clostridium kluyveri DSM 555] gi|219855782|ref|YP_002472904.1| hypothetical protein CKR_2439 [Clostridium kluyveri NBRC 12016] gi|146348221|gb|EDK34757.1| Def3 [Clostridium kluyveri DSM 555] gi|219569506|dbj|BAH07490.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 150 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ ++ +++ I ++++M + MY T+ G GLAA QIG+L RL Sbjct: 1 MALRQIRLFGDDILRKKSKEVKAVDNKIRQILNDMADTMYDTENGGGLAAPQIGILKRLA 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII + + V EGCLSIP+ +KR A + + ++ Sbjct: 61 VIDMG-----QGLIKLVNPKIIKCAGEQEVI-EGCLSIPNVFGKLKRPAKVIIEALNEEG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ LA C HE+DHL GILF D ++ Sbjct: 115 SKIILKGTKDLAKCFCHEIDHLKGILFTDLVTE 147 >gi|297748483|gb|ADI51029.1| Peptide deformylase [Chlamydia trachomatis D-EC] gi|297749363|gb|ADI52041.1| Peptide deformylase [Chlamydia trachomatis D-LC] Length = 191 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 6/154 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + L + PILR+V+ P+ +I ++ L+ +M E M G+GLAA Q+G L ++ + Sbjct: 13 RDLEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIMGV 72 Query: 64 QDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + P VFINP I S+ EGCLSIP R +V R ITV + Sbjct: 73 ERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAKNL 132 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Q + +G LA + HE DHL+G+L+ID +S Sbjct: 133 DGQQFSLALEGFLARIVMHETDHLHGVLYIDRMS 166 >gi|239932667|ref|ZP_04689620.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291441025|ref|ZP_06580415.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672] gi|291343920|gb|EFE70876.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672] Length = 181 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 81/167 (48%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL + DP+LR R + ++ L++++ MY+ G+GLAA QIG R+ V D Sbjct: 14 RPLTLLGDPVLRAPCREVTDFGPELARLVEDLFATMYAARGVGLAANQIGEPLRVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 74 PDDEDVRHLGHVVNPRLVETDGVVVRGPEGCLSLPGLEAGTERHDHAVVEGFTVTGEPVT 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++ G A CLQHE DHL G L+ D L+ + + +++ + R+ Sbjct: 134 VHGTGFFARCLQHECDHLEGRLYADRLTGWRHRRLMRQVKRASWNRE 180 >gi|289644962|ref|ZP_06477003.1| peptide deformylase [Frankia symbiont of Datisca glomerata] gi|289505235|gb|EFD26293.1| peptide deformylase [Frankia symbiont of Datisca glomerata] Length = 182 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 10/163 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+LR V+ P+ + ++ L+ +++E M+ G+GLAA Q+GV R+ Sbjct: 1 MTVREIRLLGDPVLRTVAEPVTTFDKELRRLVADLVESMHEAGGVGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP + FS++ +EGCLS+P ++KR + + + Sbjct: 61 YHVDGEVGH-----LVNPVLGPFSEELMDGEEGCLSLPGLSFELKRPERVIAVGQNVHGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I GLL+ C+QHE DHL+G+LFID L D TKK + Sbjct: 116 PVTIEGSGLLSRCVQHETDHLDGVLFIDRL-----DPETKKAA 153 >gi|255325044|ref|ZP_05366150.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] gi|255297609|gb|EET76920.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] Length = 170 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 77/150 (51%), Gaps = 1/150 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L I+ DP+L + I K ++ + L +MLE M + G+GLAA Q+G+L R+ V Sbjct: 1 MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDNAGGVGLAANQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H +NP + EGCLSIP A+ R + V D + Sbjct: 61 YDC-SHTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A GL+A C+QHE DHL+G+LF+ L Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRL 149 >gi|268679608|ref|YP_003304039.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] gi|268617639|gb|ACZ12004.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] Length = 182 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 10/168 (5%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PI+R V++P+ I + +I +LID M+ + G+G+AA Q+G + L +I + + ++ Sbjct: 12 SPIIRFVAKPVSDILDPEIQSLIDAMIFTCKESKGVGIAAPQVG--HSLSIIIMASYPNK 69 Query: 70 K-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P INP+II++S+ + EGCLS+P RA V R I VRY+D + Q Sbjct: 70 RYPYAPLMEPTALINPEIISYSEASNKEWEGCLSLPGIRALVPRHNTIEVRYVDREGKAQ 129 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LA QHE DHL G +FID + + ++ K+ +L+ ++ Sbjct: 130 YAHFKDFLARLFQHEYDHLIGKVFIDRVESTQEIIMEKEYQRLMAEKE 177 >gi|311739504|ref|ZP_07713339.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305320|gb|EFQ81388.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] Length = 170 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 1/150 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L I+ DP+L + I K ++ + L +MLE M G+GLAA Q+G+L R+ V Sbjct: 1 MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDKAGGVGLAANQVGILQRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H +NP + EGCLSIP A+ R + V D + Sbjct: 61 YDC-SHTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A GL+A C+QHE DHL+G+LF+ L Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRL 149 >gi|258655021|ref|YP_003204177.1| peptide deformylase [Nakamurella multipartita DSM 44233] gi|258558246|gb|ACV81188.1| peptide deformylase [Nakamurella multipartita DSM 44233] Length = 190 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 81/156 (51%), Gaps = 7/156 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P+VI +P+L R +RP+ + + +N LI +M E + G GLAA QIG RL Sbjct: 1 MTIRPIVICGEPVLHRPTRPVTEFGTPELNTLIQDMFETNEAAHGAGLAANQIGDDRRLF 60 Query: 60 VIDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + D D R+ NP + +P I T D EGCLS+P R+ + V+ Sbjct: 61 IYDCPDQGSRRRGYIINPTIETSP-IPTNMPDPDDDSEGCLSVPGENFPTGRADWARVKG 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D + + + G A CLQHE DHL+G L+ID L Sbjct: 120 FDSDGEPIEVEGTGFFARCLQHETDHLDGHLYIDRL 155 >gi|282866652|ref|ZP_06275694.1| peptide deformylase [Streptomyces sp. ACTE] gi|282558554|gb|EFB64114.1| peptide deformylase [Streptomyces sp. ACTE] Length = 212 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + R + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECRTVTEFDDELGRLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ NP + + + EGCLS+P A++ R + VR D Sbjct: 96 DCLDDDGVRHVGAVCNPVLEELAPERRNLDASNEGCLSVPTAYAELARPDYAVVRGQDAE 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R K+M + Sbjct: 156 GNDVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMEE 201 >gi|300858540|ref|YP_003783523.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] gi|300685994|gb|ADK28916.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] Length = 169 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 1/155 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DP+L + + + ++ NL+ +MLE M + G+GLAA Q+GV R+ V Sbjct: 1 MTIRDIRFFGDPVLTMRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H INP +D + EGCLSIPD + D R + V D + Sbjct: 61 YDCS-HIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A GL++ C+QHE DHL+G+LF+ L + R Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHR 154 >gi|170761101|ref|YP_001787941.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] gi|169408090|gb|ACA56501.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] Length = 178 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 6/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I N+ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKNLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 IDL++ + P++ INPK + + S +EGCLS P Y V R + + ++ Sbjct: 83 IDLRNG---QEPIILINPKFLKKIGKEES--EEGCLSYPGYEGIVIRPRRVAITGLNEKG 137 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A GLL HE DHL+GI++ID ++ Sbjct: 138 EEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 171 >gi|306520944|ref|ZP_07407291.1| peptide deformylase 2 [Clostridium difficile QCD-32g58] Length = 155 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/125 (40%), Positives = 79/125 (63%), Gaps = 6/125 (4%) Query: 28 IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87 I+ L+D+M E MY DG+GLAA Q+G+L R+VVID+ + + INP+II S + Sbjct: 37 IIQLLDDMAETMYDADGVGLAAPQVGILKRVVVIDIGEEL-----IELINPEIIETSGE- 90 Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 + +EGCLS+ +V+R ++ VR ++ N + + + LLA HE+DHL+GILF+ Sbjct: 91 QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGETIELEGEELLARAFCHEIDHLDGILFV 150 Query: 148 DHLSR 152 D + + Sbjct: 151 DKIEK 155 >gi|317133049|ref|YP_004092363.1| peptide deformylase [Ethanoligenens harbinense YUAN-3] gi|315471028|gb|ADU27632.1| peptide deformylase [Ethanoligenens harbinense YUAN-3] Length = 160 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V D +LR+ SR + + + L+D+M + + DG+GLAA Q+G+L R VV Sbjct: 1 MAIRKIVTVGDDVLRKKSRVVTVFDQKLHLLLDDMRDTLLQADGLGLAAPQVGILKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + D + F+NP+II ++ EGCLSIP KR A +T+R D N Sbjct: 61 IRIGDEF-----VDFVNPEIIA-AEGEQQELEGCLSIPGKWGITKRPAKVTIRAQDRNGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +GLLA HE DHL+G+L+ DH R+ Sbjct: 115 FFEKTGEGLLARAFCHETDHLDGVLYTDHALRI 147 >gi|269955166|ref|YP_003324955.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] gi|269303847|gb|ACZ29397.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] Length = 227 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 7/167 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 +P+L +RP+ ++ + ++ LID+M M +G+GLAA Q+GV R+ V DL D A Sbjct: 41 EPVLHTPARPVTELGTPELARLIDDMFTTMDVAEGVGLAAPQVGVDLRVFVYDLTDDAGD 100 Query: 70 KNPMVFINPKI-ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 ++ +NP++ + D V EGCLS+P A ++R T+R +D + A G Sbjct: 101 RHVGAVVNPELELDLDADPEVEDEGCLSVPGAYAPLERPGGATIRGVDQLGGPVQLEATG 160 Query: 129 LLATCLQHELDHLNGILFIDHLSRLK-----RDMITKKMSKLVQLRD 170 LA C HE HL+G L+ DHL+ + R K+ L Q R+ Sbjct: 161 YLARCFIHEAQHLDGTLYWDHLTPEQQADALRQRDEKRAEVLAQRRE 207 >gi|307328554|ref|ZP_07607728.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306885822|gb|EFN16834.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 200 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ ++ +P+L + R + + ++ L+D+M + +G+GLAA QIGV ++ V D Sbjct: 26 RPITVYGNPVLHKECRDVTVFDEELARLVDDMFASQRAAEGVGLAANQIGVDLKVFVYDC 85 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ NP + D V EGCLS+P ++ R + VR D + + Sbjct: 86 MDDEGVRHVGAVCNPVLEELPADRRVLDDSNEGCLSVPTAYMELARPDYAVVRGQDLDGE 145 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ D LS+ R + K+M++ Sbjct: 146 PIAVRGTGYFARCLQHETDHLYGYLYTDRLSKRDRKDVLKQMAE 189 >gi|297192182|ref|ZP_06909580.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486] gi|197720173|gb|EDY64081.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486] Length = 214 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + + LID+M + +G+GLAA QIGV ++ V Sbjct: 38 TSRPITVVGNPVLHKECKDVTEFDDKLAALIDDMFASQKTAEGVGLAANQIGVDLKVFVY 97 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + + + V EGCLS+P A + R + VR D Sbjct: 98 DCPDDEGVRHTGVVCNPVLEELAPEQRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 157 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 158 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 203 >gi|320162554|ref|YP_004175779.1| peptide deformylase [Anaerolinea thermophila UNI-1] gi|319996408|dbj|BAJ65179.1| peptide deformylase [Anaerolinea thermophila UNI-1] Length = 171 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 5/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDP+LRR ++ + + D+ LID+M+E M + G+GLAA Q+GV R++V Sbjct: 1 MAVRTIVTVPDPVLRRKAKKVTTFDKDLQVLIDDMIETMRAAPGVGLAAPQVGVSQRVIV 60 Query: 61 IDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ + K +NP+I+ S + EGCLSIP +V+R I V+ + Sbjct: 61 VEYGEGEEEDENVPKKLYAVVNPEIVEASPERVTGVEGCLSIPRMMGEVERHERIVVKGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + G A QHE+DHL GIL+ D + Sbjct: 121 NRYGKPVKYKLSGWTARIFQHEIDHLEGILYTDRAT 156 >gi|331091587|ref|ZP_08340423.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA] gi|330403614|gb|EGG83170.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA] Length = 157 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L + + ++ I + LI++M + MY G+GLAA Q+G+L R+V ID+ + Sbjct: 11 DEVLTKKCKEVKTITPRTVELIEDMFDTMYDEMGVGLAASQVGILKRIVTIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP+II S + EGCLS+P V R + VR D + Q I +GLL Sbjct: 66 GPILLINPEIIETSGE-QTGDEGCLSVPGKAGQVTRPFYAKVRACDIDMQPFEIEGEGLL 124 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A HE+DHL+G L++D + Sbjct: 125 ARAFCHEIDHLDGHLYVDKVE 145 >gi|256424099|ref|YP_003124752.1| peptide deformylase [Chitinophaga pinensis DSM 2588] gi|256039007|gb|ACU62551.1| peptide deformylase [Chitinophaga pinensis DSM 2588] Length = 191 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 14/161 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + PILR+ P++K + LI+NM + + +G GLA QI + R+ +ID + Sbjct: 2 PIVPYGSPILRKQCSPVDKNYDGLDKLIENMWHTLENANGSGLATPQINLPIRIFIIDSE 61 Query: 65 DHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + NP VFINP+I +S+ EGCLSIP A V R + Sbjct: 62 TSFNTMNPEERKVHFEGDNGIREVFINPEITEYSEAKCDDLEGCLSIPGVAAIVSRPYAV 121 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Y D N Q +GL A +QHE DH+ G L++D+LS Sbjct: 122 KIEYYDRNFQKHTKAFNGLTARIIQHEFDHIEGRLYLDYLS 162 >gi|119494635|ref|ZP_01624754.1| peptide deformylase [Lyngbya sp. PCC 8106] gi|119452038|gb|EAW33257.1| peptide deformylase [Lyngbya sp. PCC 8106] Length = 143 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 71/120 (59%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ ++ I +++ D LI ML+ MYS DGIGLAA Q+GV +L+VID + Sbjct: 24 DRVLRQSAKRISRVDDDTRRLIREMLQTMYSADGIGLAAPQVGVQKQLIVIDCEPDNAAT 83 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ INP I S + S +QEGCLSIP DV R I V + D + + I A+ LL Sbjct: 84 PPLILINPTIKKSSQEISPFQEGCLSIPGVYMDVTRPEVIEVSFKDETGRPRTIRANELL 143 >gi|124516653|gb|EAY58161.1| Polypeptide deformylase [Leptospirillum rubarum] Length = 177 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 4 KPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 KP I + DP L S + +I+ ++ + + M E++Y GIG+AA Q+G R V Sbjct: 2 KPAGILSYGDPRLLIKSTEVTRIDQEMSDFVRGMFELLYRVPGIGIAAPQVGCNMRFFVF 61 Query: 62 DLQDHA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D+ A + P+ INP +I+ + +EGCLS P V+R+ I ++ +D Sbjct: 62 DMNRRADPGSRTPVTMINP-VISAKEGAITQEEGCLSFPGIFVPVERALRIEIKGVDMEG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ++ +GL A +QHE+DHL G+L +H++R + + K+M + ++ Sbjct: 121 KDLVLEGEGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEMRAIEKI 169 >gi|25028276|ref|NP_738330.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|259507334|ref|ZP_05750234.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|39931152|sp|Q8FT51|DEF1_COREF RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|23493560|dbj|BAC18530.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314] gi|259165045|gb|EEW49599.1| peptide deformylase [Corynebacterium efficiens YS-314] Length = 169 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 5/157 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + IF DP+L + + + + LID+M + M G+GLAA Q+GVL R+ V Sbjct: 1 MTVRDVRIFGDPVLTSRADEVVDFDESLATLIDDMFDTMEDAGGVGLAANQVGVLRRVFV 60 Query: 61 IDLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D R + +NP ++ +EGCLSIPD A+ R + + D + Sbjct: 61 FDCSHVDGGLRGH---VVNPVWEPIGEETQTGKEGCLSIPDVSAETTRYETVKLSGQDRD 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A GLL+ C+QHE DHL+G+LF+ L +R Sbjct: 118 GNPIGLVASGLLSRCIQHETDHLDGVLFLKRLDPAER 154 >gi|182436096|ref|YP_001823815.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776722|ref|ZP_08235987.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1] gi|178464612|dbj|BAG19132.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657055|gb|EGE41901.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1] Length = 212 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + + LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECKDVTEFDDALARLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + + + V EGCLS+P A + R + VR D Sbjct: 96 DCPDDDGVRHTGVICNPVLEELAPEARVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M + Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201 >gi|302389590|ref|YP_003825411.1| peptide deformylase [Thermosediminibacter oceani DSM 16646] gi|302200218|gb|ADL07788.1| peptide deformylase [Thermosediminibacter oceani DSM 16646] Length = 155 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 6/145 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + D +LR+ S+ + + + L+ +M E M +G+GLAA Q+G+L R++VID+ + Sbjct: 9 YGDEVLRKKSKKVTVFDEKLKQLLADMAETMRHANGVGLAAPQVGILKRVIVIDVGEGL- 67 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + INP+II+ + V EGCLSIP +V R + VR + + I + Sbjct: 68 ----IELINPEIISKEGEV-VEIEGCLSIPGITGEVPRPQKVRVRAQNPEGEFVEIEGED 122 Query: 129 LLATCLQHELDHLNGILFIDHLSRL 153 LLA L HE+DHL+GILFID R+ Sbjct: 123 LLARALCHEIDHLDGILFIDKAKRI 147 >gi|138894692|ref|YP_001125145.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2] gi|196247688|ref|ZP_03146390.1| peptide deformylase [Geobacillus sp. G11MC16] gi|134266205|gb|ABO66400.1| Polypeptide deformylase [Geobacillus thermodenitrificans NG80-2] gi|196212472|gb|EDY07229.1| peptide deformylase [Geobacillus sp. G11MC16] Length = 157 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V +P P+L + + + + L+D+M E M + DG+GLAA Q+G+ ++ V+D+ Sbjct: 5 PIVTYPAPVLEQPCARVTVFDRQLGRLLDDMYETMIAADGVGLAAPQVGIAKQVAVVDIG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R + INP II + + EGCLS P +V R+ ++ VR + + + Sbjct: 65 DEHGR---IELINPVIIEARGE-QIDVEGCLSFPGLFGEVPRANYVKVRAQNRRGRLFTL 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 A G LA LQHE+DHL+G+LF + R Sbjct: 121 SATGFLARALQHEIDHLHGVLFTSKVIR 148 >gi|311894799|dbj|BAJ27207.1| putative polypeptide deformylase [Kitasatospora setae KM-6054] Length = 181 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ IF DP+LR ++P+ + ++ L+ ++ + M G GLAA Q+GV R+ Sbjct: 1 MAVQPIRIFGDPVLRATAKPVTVFDKELRKLVKDLTDTMLEAPGAGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ INP + + +++ EGCLS+P R D +R+ + + ++ + + Sbjct: 61 YNVDGVVGH-----LINPDL-SLTEEEQDGPEGCLSLPGLRFDTRRAYGVVAKGVNMHGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + LLA C+QHE DHL+GI+FID L R R K + + Sbjct: 115 PVEVEGTQLLARCIQHETDHLDGIIFIDRLDRETRKAAMKAIRE 158 >gi|291450059|ref|ZP_06589449.1| polypeptide deformylase [Streptomyces albus J1074] gi|291353008|gb|EFE79910.1| polypeptide deformylase [Streptomyces albus J1074] Length = 215 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 75/145 (51%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL + DP+L + + L++++ MY+ G+GLAA QIGV R+ V D Sbjct: 46 RPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHDC 105 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D R++ +NP+++ EGCLS+P A +R V +D + + Sbjct: 106 PDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPRT 165 Query: 124 IYADGLLATCLQHELDHLNGILFID 148 ++ G A CLQHE DHL+G L++D Sbjct: 166 VHGTGFFARCLQHESDHLDGTLYVD 190 >gi|15835247|ref|NP_297006.1| peptide deformylase [Chlamydia muridarum Nigg] gi|270285419|ref|ZP_06194813.1| peptide deformylase [Chlamydia muridarum Nigg] gi|270289433|ref|ZP_06195735.1| peptide deformylase [Chlamydia muridarum Weiss] gi|301336816|ref|ZP_07225018.1| peptide deformylase [Chlamydia muridarum MopnTet14] gi|13878461|sp|Q9PK41|DEF_CHLMU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|7190671|gb|AAF39461.1| polypeptide deformylase [Chlamydia muridarum Nigg] Length = 181 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 6/152 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 L + PILR+V+ PI++I ++ L+ +M E M G+GLAA Q+G L ++ ++ Sbjct: 5 LEYYDSPILRKVAAPIDEITDELRQLVLDMSETMTFYKGVGLAAPQVGHSVALFIMGVEK 64 Query: 66 HAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 P VFINP I S+ EGCLSIP R +V R ITV + + Sbjct: 65 ELDDGELIFCDFPKVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVTAKNLDG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Q + +G LA + HE DHL+G+L+ID +S Sbjct: 125 QPFSMTLEGFLARIVMHETDHLHGVLYIDRMS 156 >gi|325104375|ref|YP_004274029.1| peptide deformylase [Pedobacter saltans DSM 12145] gi|324973223|gb|ADY52207.1| peptide deformylase [Pedobacter saltans DSM 12145] Length = 194 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 97/181 (53%), Gaps = 15/181 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++ + IL++ IEK ++ LI +M E M + +G GLA+ QIG+ RL ++ Sbjct: 1 MKRSILAYGHHILKQKCNYIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60 Query: 62 DLQD------HAHRKNPM---------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 D + RK FIN KII S++ +EGCLSIP+ VKR Sbjct: 61 DSKSTFDNLGEEDRKFYFPQDDKGIMETFINAKIIQRSEELWDDEEGCLSIPNLFYKVKR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + IT+ Y + N + QI G A +QHE DH G+L++D+L L + ++ K+ K++ Sbjct: 121 NWAITIEYYNRNFEKQIRTFSGTTARMIQHEYDHTEGVLYLDYLKPLTKRLMASKLQKIL 180 Query: 167 Q 167 + Sbjct: 181 K 181 >gi|302542647|ref|ZP_07294989.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302460265|gb|EFL23358.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ + +P+L + + + + + ++ LID+M + +G+GLAA QIGV ++ V D Sbjct: 44 RPITVVGNPVLHKECQDVTEFDDELAALIDDMFASQRAAEGVGLAANQIGVDRKVFVYDC 103 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ V NP + D V EGCLS+P ++ R + VR D Sbjct: 104 LDDEGVRHVGVVCNPVLEELPADRRVLDDSNEGCLSVPTAYCELARPDYAVVRGQDAEGN 163 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R + ++M++ Sbjct: 164 PITVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDVLRQMAE 207 >gi|320355330|ref|YP_004196669.1| peptide deformylase [Desulfobulbus propionicus DSM 2032] gi|320123832|gb|ADW19378.1| peptide deformylase [Desulfobulbus propionicus DSM 2032] Length = 168 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +P P+LR+ + I + ++ LI++M + MY+ G+GLAA QIGV +LV+ Sbjct: 1 MAIREIITYPHPVLRQKAEKITVFDQELATLIEDMADTMYNAPGVGLAANQIGVARQLVL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +N +V INP+ I+ + +EGCLS+ + VKR I V +D Sbjct: 61 VDRSTKDNERNYLVLINPE-ISAGEGSVTDEEGCLSVIECYDKVKRFKKIHVTALDREGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A+ A +QHE+DHL G LFID LS Sbjct: 120 PLEFDAEDRFARIIQHEVDHLLGTLFIDRLS 150 >gi|258489222|gb|ACV72595.1| peptide deformylase [Pseudomonas syringae pv. cerasicola] Length = 169 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 91/163 (55%), Gaps = 12/163 (7%) Query: 10 PD-PILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 PD P+LR+VS ++K ++D + L+D+M E M +G+GLAA QIGV R++VI+ + Sbjct: 8 PDAPLLRKVSAQVDKFSNDELRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIEFSGNE 67 Query: 68 HRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R P V INP +IT + +EGC S+P V R A I D + + Sbjct: 68 ERAPGESPVPPTVLINP-VITSGVGRTEGREGCFSVPGKIGIVPRYATIEYTAQDMDGLN 126 Query: 122 QIIYADGLLATCLQHELDHLNGILFID---HLSRLKRDMITKK 161 A+G A +QHE+DHLNGIL+ID +S +R+ + K Sbjct: 127 VRGKAEGFHARIIQHEVDHLNGILYIDIASEVSLYQREPVASK 169 >gi|88855001|ref|ZP_01129666.1| polypeptide deformylase [marine actinobacterium PHSC20C1] gi|88815529|gb|EAR25386.1| polypeptide deformylase [marine actinobacterium PHSC20C1] Length = 205 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 12/158 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++I DP+L + P+ +S + L+ +M E M G+GLAA Q+GV R+ V Sbjct: 19 MAVLPIIITGDPVLHTPANPVTAFDSSLNTLVSDMFETMEEAPGVGLAAPQVGVPLRVFV 78 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQ------EGCLSIPDYRADVKRSAFITV 112 D D AH + V INP++ + VY+ EGCLSIP R + R+ + + Sbjct: 79 YDWIDDDDAHWRG--VAINPEL--WHTPTPVYEPGEADEEGCLSIPGERFGLVRAERVIL 134 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 R +D + + I A G LA QHE DHL+G+L+ D L Sbjct: 135 RAVDLDQKPFEIEASGWLARIFQHEYDHLDGVLYADRL 172 >gi|146276206|ref|YP_001166365.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] gi|145554447|gb|ABP69060.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] Length = 163 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P++ +PDP R+S+P + L +ML MY G GLAA Q+G + RL Sbjct: 1 MAVRPILRWPDP---RLSQPCAPAVPGPALEELASDMLATMYHAQGRGLAAPQVGEMVRL 57 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 V+D P VF+NP+I+ S + EGCLSI R V R+ I +R+ Sbjct: 58 FVMDTVWKDGPAEPQVFVNPEILWMSGERVEGPEGCLSIAGPRLTVARAPEIRLRWTSLF 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFI 147 Q G A C QHE+DHL+GI+ + Sbjct: 118 GAEQEALLSGFAAICAQHEIDHLDGIVIL 146 >gi|239978163|ref|ZP_04700687.1| polypeptide deformylase [Streptomyces albus J1074] Length = 183 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 75/145 (51%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL + DP+L + + L++++ MY+ G+GLAA QIGV R+ V D Sbjct: 14 RPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D R++ +NP+++ EGCLS+P A +R V +D + + Sbjct: 74 PDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPRT 133 Query: 124 IYADGLLATCLQHELDHLNGILFID 148 ++ G A CLQHE DHL+G L++D Sbjct: 134 VHGTGFFARCLQHESDHLDGTLYVD 158 >gi|218442239|ref|YP_002380568.1| peptide deformylase [Cyanothece sp. PCC 7424] gi|218174967|gb|ACK73700.1| peptide deformylase [Cyanothece sp. PCC 7424] Length = 176 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 7/157 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD---- 65 +PILR+ ++ +E I + LID+++ S +G+G+AA Q+ YRL ++ + Sbjct: 12 NPILRQNAQSVENITDITLQTLIDDLIATAASANGVGIAAPQVSQSYRLFIVASRPSPRY 71 Query: 66 -HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +A NP INP+II+ S + EGCLS+P R V R ITV Y+D Q Sbjct: 72 PNAPEMNPTPMINPRIISHSPEKVKGWEGCLSVPGLRGLVPRYHTITVEYLDRYGNLQRQ 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 +A QHELDHL+GILF+D L +D+ T++ Sbjct: 132 ELTDFVARIFQHELDHLDGILFVDRLES-SQDLYTEE 167 >gi|91205481|ref|YP_537836.1| polypeptide deformylase [Rickettsia bellii RML369-C] gi|91069025|gb|ABE04747.1| Polypeptide deformylase [Rickettsia bellii RML369-C] Length = 195 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 16/161 (9%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH- 68 P+ +LR S P+ I+S + + + +MLE MY+ +GIG++A+Q+G R +++D+ + Sbjct: 18 PNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALIVDIPKEEND 77 Query: 69 --RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR------ADVKRSAFITVRYMDCNAQ 120 ++ P INP++ S++ + E CLSI DV+R I++ Y+D Sbjct: 78 QIKREPFFIINPEVNYLSEEKVILNEDCLSIRKEDGIAFIIGDVERPKNISISYIDLEGN 137 Query: 121 HQIIYADG-------LLATCLQHELDHLNGILFIDHLSRLK 154 + + +G + CLQHELDHL+GILFID L K Sbjct: 138 SKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRLYNAK 178 >gi|168334698|ref|ZP_02692834.1| peptide deformylase [Epulopiscium sp. 'N.t. morphotype B'] Length = 160 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 6/138 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPILR+VSRP+ K + + + +++M E M S G+GLAA Q+G L R+ +ID+ + Sbjct: 11 DPILRKVSRPVVKFDPLLHSFLNDMEETMRSASGVGLAAPQVGTLKRVFIIDIGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + FINP II F D EGCLS+P V R +T++ D H I L Sbjct: 66 GLVEFINP-IIIFEDGEQTGDEGCLSVPGRYGVVTRPNTVTIKAQDRYGNHFEITKSELF 124 Query: 131 ATCLQHELDHLNGILFID 148 A + HE DHL+G +F+D Sbjct: 125 ARAICHENDHLDGKIFVD 142 >gi|183220960|ref|YP_001838956.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911055|ref|YP_001962610.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238687791|sp|B0SHH1|DEF_LEPBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687819|sp|B0SQM2|DEF_LEPBP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167775731|gb|ABZ94032.1| N-formylmethionyl-tRNA deformylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779382|gb|ABZ97680.1| Peptide deformylase (PDF; Polypeptide deformylase) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 179 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 80/153 (52%), Gaps = 9/153 (5%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +PILR+ S + E D LI +M E M DG+GLAA QIGVL +LVV+ +D Sbjct: 11 NPILRQTSEDVSESEIQTKDFKKLIRDMFETMRHADGVGLAAPQIGVLKKLVVVGQEDDN 70 Query: 68 HR--KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R P V +NP+I S + EGCLS+P R V+R I +++ D N Sbjct: 71 ERYPGTPEVPNQIILNPEITPLSPPRDGFWEGCLSVPGMRGYVERPNKIRMKWRDENYVE 130 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +G A LQHE DHL G+L++D L K Sbjct: 131 HDEIIEGYRAIVLQHECDHLFGVLYVDRLKSTK 163 >gi|72162127|ref|YP_289784.1| peptide deformylase [Thermobifida fusca YX] gi|71915859|gb|AAZ55761.1| peptide deformylase [Thermobifida fusca YX] Length = 221 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 3/162 (1%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 V+ D + RR + E ++ LID+M MY +G+GLAA Q+GV R+ V D D Sbjct: 42 VVGEDVLHRRNADVTEFGTPELHTLIDDMFRTMYVAEGVGLAANQVGVDLRVFVYDCPDD 101 Query: 67 AHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 ++ INP + T+ + V EGCLS+P A++ R+ + V D + Sbjct: 102 DGVRHVGHVINPVLETWGAEEEGLVVENEGCLSVPGPHAELARAPYARVTGFDRDGNPVT 161 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + G A CLQHE DH G L+ID LS+ +R + K M ++ Sbjct: 162 VEGSGYFARCLQHETDHTLGRLYIDRLSKRERKKVLKAMEEM 203 >gi|296117966|ref|ZP_06836549.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] gi|295969197|gb|EFG82439.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] Length = 169 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 4/165 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + ++ DP+L + I + + + L ++MLE M G+GLAA QIG+L R+ V Sbjct: 1 MTVKAIRLYGDPVLTTRAGEITEFDESLEKLAEDMLETMDDAGGVGLAANQIGLLKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP D V EGCLSIPD +R ++V D + Sbjct: 61 YDCS-SVETGMRGAIINPVWEAVGDKTQVGNEGCLSIPDISMPTERFETVSVSGQDVHGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL+A C+QHE DHL+G+LF L RL+ D + M+++ Sbjct: 120 PVSMVVSGLMARCVQHETDHLDGVLF---LQRLETDDRKQAMAQI 161 >gi|119485654|ref|ZP_01619929.1| polypeptide deformylase [Lyngbya sp. PCC 8106] gi|119456979|gb|EAW38106.1| polypeptide deformylase [Lyngbya sp. PCC 8106] Length = 175 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 17/161 (10%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 +P+LRR ++PI I + D+ LIDN++ + T+G+G+AA Q+ RL+++ A R Sbjct: 12 NPVLRRHAQPITDIADQDLQTLIDNLIATVLKTNGVGIAAPQVSRSDRLLIV-----ASR 66 Query: 70 KN----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 N P INPKI+ S + EGCLSIP R V R I V Y D + Sbjct: 67 PNRRYPQAPLMAPTAMINPKIVNHSTEQEKGWEGCLSIPGVRGLVPRYQTIQVEYTDRSG 126 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 Q Q +A QHE DHL GI+F+D ++ ++D+IT+ Sbjct: 127 QLQRQQLTDFVARIFQHEYDHLEGIVFLDRVND-EQDVITE 166 >gi|297623929|ref|YP_003705363.1| peptide deformylase [Truepera radiovictrix DSM 17093] gi|297165109|gb|ADI14820.1| peptide deformylase [Truepera radiovictrix DSM 17093] Length = 212 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 30/175 (17%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61 F DP+LR+V+RP+ + ++ L +M+E M+ +G+GLAA QIG+ RL V Sbjct: 8 FGDPVLRKVARPVTHFDGELETLAKDMIETMFEANGVGLAAPQIGLSKRLFVALELAPRA 67 Query: 62 -------DLQDHAHRKNP------------MVFINPKIITFSD-DFSVYQEGCLSIPD-Y 100 + + A +P V +NP+II S + V +GCLS+P + Sbjct: 68 AEEAAGQEGEAEAEALSPDEKRERWGVVAEHVMVNPEIIARSGTQYGV--DGCLSVPGLF 125 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +KR + VRY D A+G A +QHELDHL+G+LF D L +R Sbjct: 126 IEKMKRDRTVRVRYQDLQGAWHEREAEGHFAHVIQHELDHLDGVLFFDRLPEAER 180 >gi|227547872|ref|ZP_03977921.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] gi|227080057|gb|EEI18020.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] Length = 190 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 6/162 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++ +E+ +++ LI +M E M + G+GLAA Q+GV RL V Sbjct: 1 MTIRPIVIHGDPVLHEPTKAVEQPVAELQELIADMHETMDAAYGVGLAANQVGVPLRLFV 60 Query: 61 IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + NP++ + T D EGCLS+P R+++ V + Sbjct: 61 YHCPDGDRMRRGTVINPVLETSEVPKTMPSDDGDDDEGCLSVPGESWPTGRASWAKVTGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRD 156 D N ++ +G A CLQHE+ HL+G+++ D L+ R KR+ Sbjct: 121 DENGDEVVVEGEGFFARCLQHEVGHLDGVVYTDVLTGRYKRE 162 >gi|158313554|ref|YP_001506062.1| peptide deformylase [Frankia sp. EAN1pec] gi|238686856|sp|A8LE21|DEF_FRASN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158108959|gb|ABW11156.1| peptide deformylase [Frankia sp. EAN1pec] Length = 183 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 6/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-IDLQDHAHR 69 DP+LR V+ P+ + ++ L+D++ + M G+GLAA Q+GV R+ +D D Sbjct: 11 DPVLRTVADPVATFDRELRRLVDDLADTMRDAGGVGLAAPQLGVSLRIFTYLDDSDEVGH 70 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 INP + FS++ +EGCLS+P D++R + + + + G+ Sbjct: 71 -----LINPVLGPFSEEMMDGEEGCLSLPGLAFDLRRPERVLAVGQNSHGDPVTVEGSGI 125 Query: 130 LATCLQHELDHLNGILFIDHLSR 152 L+ CLQHE DHL+GILFID L + Sbjct: 126 LSRCLQHETDHLDGILFIDRLDK 148 >gi|315604523|ref|ZP_07879586.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313535|gb|EFU61589.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] Length = 163 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V PI +I + L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPITEITPSVKALVEDLLEGVDMEGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + +NP+I+ S+D + EGCLS+PD KRS + D + Sbjct: 61 WNID-----GDIGYVLNPRIVALSEDEYQDGDEGCLSVPDLWYPTKRSWYARCEGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + ++ + L+A C+QHE DHL+G ++ID L R R Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRPTR 151 >gi|29829575|ref|NP_824209.1| polypeptide deformylase [Streptomyces avermitilis MA-4680] gi|39931079|sp|Q82IV0|DEF1_STRAW RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|29606683|dbj|BAC70744.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680] Length = 216 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + +++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTDFGAELEQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D QD ++ V NPK++ D EGCLS+P A + R + V D Sbjct: 100 DCQDDEGTRHVGVVCNPKLVDLPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|148272776|ref|YP_001222337.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830706|emb|CAN01646.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 188 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +R +E + D+ L+ +M + M G+GLAA Q+GV R+ V Sbjct: 1 MAVLPIRITGDPVLHAPAREVEAFDDDLRTLVADMFDTMDEAPGVGLAAPQVGVPLRVFV 60 Query: 61 IDLQDHAHRK------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + NP +FI P + +D+ +EGCLS P R + R+ +R Sbjct: 61 YSYETDEGEPLRGVAVNPDLFITPVAVREADE-DTEEEGCLSFPGERFPLVRADRAILRA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D + + I A G A LQHE DHL+G+L+ D L+ + R + K + K Sbjct: 120 VDLDGRPFEIQAAGWFARILQHEFDHLDGLLYTDRLAHVHRKPVAKVIRK 169 >gi|119946929|ref|YP_944609.1| peptide deformylase [Psychromonas ingrahamii 37] gi|119865533|gb|ABM05010.1| peptide deformylase [Psychromonas ingrahamii 37] Length = 182 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 7/162 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+ P+LR+ + +E + +D LI+ M+ + G+G+AA QI R+ ++ Sbjct: 10 PIAQLGHPVLRQRATEVENVLADECQQLINQMMFAVSEAGGVGIAAPQIHHSVRMFIMCS 69 Query: 64 QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + +A + P INP+I+ +S D EGCLS+P R V R + ITVRY+D Sbjct: 70 KPNARYPDAPLMAPTAIINPEILHYSSDKVKGWEGCLSVPSMRGLVPRHSQITVRYVDQQ 129 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 Q G +A QHELDHLNG+ FID L + D+I++ Sbjct: 130 GNKQQQELTGFIARIFQHELDHLNGLTFIDQLESTQ-DLISE 170 >gi|325121302|gb|ADY80825.1| peptide deformylase 2 [Acinetobacter calcoaceticus PHEA-2] Length = 160 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 18/152 (11%) Query: 13 ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 IL+ + P+ ++NS+ + L D M M +G+G+AA Q+ + R++++ A R Sbjct: 14 ILKLTAAPVSVNELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRVIIV-----ASR 68 Query: 70 KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 NP +V +NP+I+ FSD+ + +EGCLS+PD R V+R+ + V+Y+ Sbjct: 69 PNPRYPDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVKVKYLTLQG 128 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + G A +QHE+DHLNGILF++ +S Sbjct: 129 ETVETNFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|220927497|ref|YP_002504406.1| peptide deformylase [Clostridium cellulolyticum H10] gi|219997825|gb|ACL74426.1| peptide deformylase [Clostridium cellulolyticum H10] Length = 151 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 7/147 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D +LR+ RP++++N + L+ +M + MY+T +G GLAA Q+G+L R+VVID+ D Sbjct: 11 DEVLRKKCRPVDEVNDKVRELLKDMADTMYNTGNGAGLAAPQVGILKRIVVIDMGDGL-- 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + +NP+I+ V EGCLSI V R + V+ ++ + II Sbjct: 69 ---INLVNPEIVEQKGSQEVI-EGCLSILGKWGKVIRPTEVKVKALNEKGEEVIITGKKD 124 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRD 156 +A CL HE+DHL+GILF D ++ D Sbjct: 125 MAKCLCHEIDHLDGILFTDKVTEYIED 151 >gi|295836587|ref|ZP_06823520.1| peptide deformylase [Streptomyces sp. SPB74] gi|197697279|gb|EDY44212.1| peptide deformylase [Streptomyces sp. SPB74] Length = 210 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 3/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + +P+L + + ++ L+D+M + +G+GLAA Q+GV ++ V D Q Sbjct: 37 PITVVGNPVLHKECADVTDFGPELAKLVDDMFASQRAAEGVGLAANQVGVSLKVFVYDCQ 96 Query: 65 DHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ V NPK+ + EGCLS+P A R+ + V D + Sbjct: 97 DDQGERHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGNA 156 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L++D LS+ R K+M++ Sbjct: 157 IKVRGTGYFARCLQHETDHLYGSLYLDRLSKRDRKDALKQMAE 199 >gi|158336649|ref|YP_001517823.1| peptide deformylase [Acaryochloris marina MBIC11017] gi|158306890|gb|ABW28507.1| peptide deformylase [Acaryochloris marina MBIC11017] Length = 176 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 6/162 (3%) Query: 11 DPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD---- 65 +P LR+ + P++ + +I +LID+++ M ++G+G+AA Q+G+ ++V++ + Sbjct: 13 NPKLRQTACPVQNPTDLEIQSLIDDLIGTMEESNGVGIAAPQVGIDLQVVIVASRPTLRY 72 Query: 66 -HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 HA +P+ INP I + EGCLS+P R V R++ I+V Y D N Q Q Sbjct: 73 PHAPHMDPIAMINPHITPIGAERVKDWEGCLSVPGIRGLVPRASTISVEYQDRNGQAQTE 132 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +A +QHE DHL G +FID + + + + KLV Sbjct: 133 IFQDFVARIIQHECDHLQGYVFIDRVESTRELITENEYHKLV 174 >gi|331699449|ref|YP_004335688.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190] gi|326954138|gb|AEA27835.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190] Length = 190 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 6/157 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+L +RP+ + + + L+D+M E M + G+GLAA QIGV R+ V Sbjct: 1 MTVRPIRIIGDPVLHAPTRPVVEFDDALRELVDDMFETMAAAHGVGLAANQIGVDLRVFV 60 Query: 61 IDLQDHAHRKNPM-VFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D + V +NP + T D +EGCLS+P + R+ + V Sbjct: 61 YDCPDEVTKTMARGVVVNPVLETSEIPETMPDPEEDEEGCLSVPGEQFPTGRADWARVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +D + Q G LA C QHE+DHL+G L+++ L+ Sbjct: 121 VDVDGQPVEAEGRGFLARCFQHEVDHLDGHLYVERLT 157 >gi|19553932|ref|NP_601934.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|62391575|ref|YP_226977.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|39931164|sp|Q8NM41|DEF2_CORGL RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|21325511|dbj|BAC00133.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC 13032] gi|41326917|emb|CAF20761.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032] Length = 193 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 9/163 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++ + + S++ LI +M E M +G+GLAA QIGV R+ V Sbjct: 1 MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITF-------SDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D D + FINP + T +DD S +EGCLS+P R+ + V Sbjct: 61 YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGS-DEEGCLSVPGEGFPTGRAHWAKVT 119 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 ++ + + A+G LA C QHE+ HL+G L+ D L R KR Sbjct: 120 GLNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKR 162 >gi|145296738|ref|YP_001139559.1| peptide deformylase [Corynebacterium glutamicum R] gi|140846658|dbj|BAF55657.1| hypothetical protein [Corynebacterium glutamicum R] Length = 193 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 9/163 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++ + + S++ LI +M E M +G+GLAA QIGV R+ V Sbjct: 1 MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITF-------SDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D D + FINP + T +DD S +EGCLS+P R+ + V Sbjct: 61 YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGS-DEEGCLSVPGEGFPTGRAHWAKVT 119 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 ++ + + A+G LA C QHE+ HL+G L+ D L R KR Sbjct: 120 GLNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKR 162 >gi|237796060|ref|YP_002863612.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|229262415|gb|ACQ53448.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 178 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 6/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D +L+RVSR +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 IDL++ + P++ INPK + + S +EGCLS P Y V R + + ++ Sbjct: 83 IDLRNG---QEPIIIINPKFLKKIGKEES--EEGCLSYPGYEGIVIRPRRVAITGLNEKG 137 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A GLL HE DHL+GI++ID ++ Sbjct: 138 EEVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKV 171 >gi|182701890|ref|ZP_02617367.2| peptide deformylase [Clostridium botulinum Bf] gi|182674086|gb|EDT86047.1| peptide deformylase [Clostridium botulinum Bf] Length = 178 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 6/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D +L+RVSR +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 IDL++ + P++ INPK + + S +EGCLS P Y V R + + ++ Sbjct: 83 IDLRNG---QEPIIIINPKFLKKIGKEES--EEGCLSYPGYEGIVIRPRRVAITGLNEKG 137 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A GLL HE DHL+GI++ID ++ Sbjct: 138 EEVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKV 171 >gi|323464693|gb|ADX76846.1| peptide deformylase 1 [Staphylococcus pseudintermedius ED99] Length = 161 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 PILR+ + P+ ++ + +LI ++ + +Y +G LAA QIGV R+ ++D++ + Sbjct: 11 PILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIVDME----QDG 66 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + INP++I SD+ + EGCLS+P +V RS ITVR D N + A +A Sbjct: 67 LLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNEVEMTAYDDIA 126 Query: 132 TCLQHELDHLNGILFIDHLSR 152 + H +D+LNGILF+D + R Sbjct: 127 RMILHVIDNLNGILFVDMMDR 147 >gi|157827157|ref|YP_001496221.1| polypeptide deformylase [Rickettsia bellii OSU 85-389] gi|157802461|gb|ABV79184.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389] Length = 187 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 16/161 (9%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH- 68 P+ +LR S P+ I+S + + + +MLE MY+ +GIG++A+Q+G R +++D+ + Sbjct: 10 PNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALIVDIPKEEND 69 Query: 69 --RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR------ADVKRSAFITVRYMDCNAQ 120 ++ P INP++ S++ + E C+SI DV+R I++ Y+D Sbjct: 70 QIKREPFFIINPEVNYLSEEKVILNEDCISIRKEDGIAFIIGDVERPKNISISYIDLEGN 129 Query: 121 HQIIYADG-------LLATCLQHELDHLNGILFIDHLSRLK 154 + + +G + CLQHELDHL+GILFID L K Sbjct: 130 SKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRLYNAK 170 >gi|148380578|ref|YP_001255119.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|148290062|emb|CAL84181.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] Length = 156 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 1 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 IDL++ + P++ INPK FS +EGCLS P Y V R + + ++ Sbjct: 61 IDLRNG---QEPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEK 114 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A GLL HE DHL+GI++ID ++ Sbjct: 115 GEEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 149 >gi|167772294|ref|ZP_02444347.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM 17241] gi|167665397|gb|EDS09527.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM 17241] Length = 155 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 7/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D LR+ SRP+ N + L+D+M E M G+G+AA Q+GVL R VVID+ + H Sbjct: 11 DERLRKKSRPVTDFNERLWTLLDDMYETM-KDGGVGIAAPQVGVLRRAVVIDVGEGKHE- 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +NP I+ S D EGCLSIP V R A + ++ D + + A+G Sbjct: 69 ----LVNPVIVEQSGD-QCGGEGCLSIPGQYGLVHRPAQLRLKAQDRYGKPFELEAEGYF 123 Query: 131 ATCLQHELDHLNGILFIDHLSRL 153 A + HE+DHL+GILFID R+ Sbjct: 124 AVAVCHEVDHLDGILFIDKAERM 146 >gi|134097125|ref|YP_001102786.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|291009658|ref|ZP_06567631.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|133909748|emb|CAL99860.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] Length = 191 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 8/158 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +R +E + ++ L+D+M E M + G+GLAA QIGV RL V Sbjct: 1 MAVHPIRIVGDPVLHNPTRLVENFDDELRTLVDDMFETMAAASGVGLAANQIGVDLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D ++ V +NP + T D EGCLS+P R+ + V Sbjct: 61 YDCPDDEGVQHRGVVVNPVLETTEVPESMPDPEEDWEGCLSVPGESFPTGRADWAKVTGS 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D + + G A CLQHE DHL+G L+ LSRL Sbjct: 121 DVDGNPVEVEGTGFFARCLQHETDHLDGFLY---LSRL 155 >gi|189502648|ref|YP_001958365.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus 5a2] gi|238692315|sp|B3ETT4|DEF_AMOA5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189498089|gb|ACE06636.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus 5a2] Length = 188 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 14/175 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+V + + ILR+ + PIE + +D+ LI++M M + G+GLAA QIG +L V+D+ Sbjct: 4 PIVPYGESILRQTAAPIE-LGTDLETLIESMFITMNAAKGLGLAAPQIGKSIQLFVVDVS 62 Query: 64 --------QDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 Q HRK V+INP + + + + Y+EGCLSIP DV R+ + +++ Sbjct: 63 PFVGDGMVQPDKHRK---VYINPVLEIYQPNTITHYEEGCLSIPGIYVDVPRNKRVRIKF 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N Q Q + A +QHE DHL G L ID+L +R + K+ + Q R Sbjct: 120 FDRNWQAQEEDLVDMPARVVQHEYDHLYGKLHIDYLRADRRLRLKSKLENIKQGR 174 >gi|300855374|ref|YP_003780358.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300435489|gb|ADK15256.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 156 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 87/153 (56%), Gaps = 3/153 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ F D +LR+VSR ++ I+ + + ++ ++ + +Y++ G+GL+A QIG+L R++ Sbjct: 1 MAVREILKFGDKLLRKVSRKVKNIDEETLGIVQDLKDTLYASSGVGLSAPQIGILKRIIF 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL +P+V INPKI+ + EGCLS + V R + V D N Sbjct: 61 IDLG--KENTDPVVLINPKIVK-KMGRNEGPEGCLSYNGHEGIVVRPKKVIVVGEDINGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 A+GL A HE+DHL+G+L+ D ++ Sbjct: 118 EVRYNAEGLFARAFCHEIDHLDGVLYTDKAKKV 150 >gi|318060209|ref|ZP_07978932.1| peptide deformylase [Streptomyces sp. SA3_actG] gi|318079746|ref|ZP_07987078.1| peptide deformylase [Streptomyces sp. SA3_actF] Length = 210 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 3/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + +P+L + + + ++ L+D+M + +G+GLAA Q+GV ++ V D Q Sbjct: 37 PITVVGNPVLHKECADVTEFGPELAKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDCQ 96 Query: 65 DHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ V NPK+ + EGCLS+P A R+ + V D + Sbjct: 97 DDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGNA 156 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L++D LS+ R K+M++ Sbjct: 157 IKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199 >gi|302521840|ref|ZP_07274182.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|302430735|gb|EFL02551.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 210 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 3/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + +P+L + + + ++ L+D+M + +G+GLAA Q+GV ++ V D Q Sbjct: 37 PITVVGNPVLHKECADVTEFGPELTKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDCQ 96 Query: 65 DHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ V NPK+ + EGCLS+P A R+ + V D + Sbjct: 97 DDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGNA 156 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L++D LS+ R K+M++ Sbjct: 157 IKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199 >gi|319892209|ref|YP_004149084.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] gi|317161905|gb|ADV05448.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] Length = 161 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 PILR+ + P+ ++ + +LI ++ + +Y +G LAA QIGV R+ ++D++ + Sbjct: 11 PILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIVDME----QDG 66 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + INP++I SD+ + EGCLS+P +V RS ITVR D N + A +A Sbjct: 67 LLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNEVEMTAYDDIA 126 Query: 132 TCLQHELDHLNGILFIDHLSR 152 + H +D+LNGILF+D + R Sbjct: 127 RMILHVIDNLNGILFVDMIDR 147 >gi|153933577|ref|YP_001384865.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153936131|ref|YP_001388335.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|152929621|gb|ABS35121.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152932045|gb|ABS37544.1| peptide deformylase [Clostridium botulinum A str. Hall] Length = 178 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 IDL++ + P++ INPK FS +EGCLS P Y V R + + ++ Sbjct: 83 IDLRNG---QEPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEK 136 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A GLL HE DHL+GI++ID ++ Sbjct: 137 GEEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 171 >gi|89898499|ref|YP_515609.1| peptide deformylase [Chlamydophila felis Fe/C-56] gi|123722301|sp|Q253S4|DEF_CHLFF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|89331871|dbj|BAE81464.1| polypeptide deformylase [Chlamydophila felis Fe/C-56] Length = 186 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 6/157 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + L + ILRR + I +I I L+ +M E M + G+GLAA Q+G L V+ + Sbjct: 3 RELEYYGSHILRRKADIIPEITDTIRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVVCV 62 Query: 64 QDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + + P V+INP + S+D + +EGCLSIP RADV R ITV ++ Sbjct: 63 EGETEDGDLIFCDFPKVYINPVLSNASEDLVIGREGCLSIPGLRADVYRPQSITVTALNL 122 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + Q + +G A + HE DHL+G+L+ID + K Sbjct: 123 DGQEFTEHLEGFPARIIMHENDHLHGVLYIDKMEEPK 159 >gi|261885374|ref|ZP_06009413.1| peptide deformylase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 153 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 83/135 (61%), Gaps = 4/135 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 ++ +PD L S + K ++++ +D+M + M + +GIGLAA+Q+G R+ +I+L Sbjct: 5 VITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFIINLIN 64 Query: 64 QDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +D KN ++ INPK I+ D VYQEGCLS+P Y DVKR+ I +++ D + Sbjct: 65 EDEVQDKNDLLEIINPKFIS-KDGEIVYQEGCLSVPGYYEDVKRAKDIKIQFQDRFGNLK 123 Query: 123 IIYADGLLATCLQHE 137 + ADGLL+ +QHE Sbjct: 124 ELEADGLLSVAIQHE 138 >gi|302549859|ref|ZP_07302201.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302467477|gb|EFL30570.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 199 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 80/166 (48%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL + DP+L + ++ L++++ MY+ G+GLAA QIG R+ V D Sbjct: 32 RPLTLHGDPVLHTPCAEVTDFGPELARLVEDLFATMYAAQGVGLAANQIGEPLRVFVFDC 91 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 92 PDDEDVRHLGHVVNPRLVETDGVVIRGPEGCLSLPGLEAGTERYDHAVVEGFTMTGEPVT 151 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++ G A CLQHE DHL G ++ DHLS + + +++++ R Sbjct: 152 LHGTGFFARCLQHEYDHLEGRIYADHLSGWRHRKLMRQVARASWCR 197 >gi|322806950|emb|CBZ04520.1| peptide deformylase [Clostridium botulinum H04402 065] Length = 178 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 8/145 (5%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ +IDL++ + Sbjct: 33 DKTLKRVSKKVECIDDEITGIIKDLKDTLYAVTGIGLAAPQIGYLKRIFIIDLRNG---Q 89 Query: 71 NPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P++ INPK FS +EGCLS P Y V R + + ++ + A G Sbjct: 90 EPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGEEVTYEATG 146 Query: 129 LLATCLQHELDHLNGILFIDHLSRL 153 LL HE DHL+GI++ID ++ Sbjct: 147 LLKNAFCHEYDHLDGIVYIDKAKKV 171 >gi|328957297|ref|YP_004374683.1| peptide deformylase [Carnobacterium sp. 17-4] gi|328673621|gb|AEB29667.1| peptide deformylase [Carnobacterium sp. 17-4] Length = 176 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 87/146 (59%), Gaps = 4/146 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +P+ +L ++ +E+I +I+ L+++M + M + DGIG+AA Q+ RL ++++ Sbjct: 17 PILTYPNALLTTPTKEVEEITDEIIQLLEDMHDTMIANDGIGIAAPQVSSNLRLALVEID 76 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + INP+I+ + + ++ EGCLS P+ +KR+ I +R+ D N + Sbjct: 77 EESGL---FEMINPQIVQSTGE-TIDVEGCLSFPEVYGTIKRADTIVLRFYDRNGDEFEV 132 Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150 AD LA QHEL+HL+G LF D + Sbjct: 133 EADDYLARAFQHELEHLDGKLFTDKI 158 >gi|153941088|ref|YP_001391920.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|170756373|ref|YP_001782237.1| peptide deformylase [Clostridium botulinum B1 str. Okra] gi|152936984|gb|ABS42482.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|169121585|gb|ACA45421.1| peptide deformylase [Clostridium botulinum B1 str. Okra] gi|295319940|gb|ADG00318.1| peptide deformylase [Clostridium botulinum F str. 230613] Length = 178 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 IDL++ + P++ INPK FS +EGCLS P Y V R + + ++ Sbjct: 83 IDLRNG---QEPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEK 136 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A GLL HE DHL+GI++ID ++ Sbjct: 137 GEEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 171 >gi|116328151|ref|YP_797871.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331396|ref|YP_801114.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280858|sp|Q04RW4|DEF_LEPBJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122284057|sp|Q051Q7|DEF_LEPBL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116120895|gb|ABJ78938.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125085|gb|ABJ76356.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 178 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 8/152 (5%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 D ILR+VS P+ E + LI +M + M +G+GLAA QIG+L ++VV+ +D+ Sbjct: 11 DSILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNE 70 Query: 68 HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + V +NP I + D S + EGCLS+P R V+R I +++MD Sbjct: 71 RYPDTPNVPERVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKIRMQWMDEKGDRF 130 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 DG A QHE DHL+GIL++D L K Sbjct: 131 DETIDGYKAVVYQHECDHLSGILYVDRLKDTK 162 >gi|229489380|ref|ZP_04383243.1| polypeptide deformylase [Rhodococcus erythropolis SK121] gi|229323477|gb|EEN89235.1| polypeptide deformylase [Rhodococcus erythropolis SK121] Length = 212 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 5/163 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P++ + P+L +RP+ + SD+ +L+ +M + G GLAA QIGV + + Sbjct: 35 TAQPIIRWGTPVLHTPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 94 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSV----YQEGCLSIPDYRADVKRSAFITVRYMDC 117 D D + V NP ++ + Y EGCLS+P D+ R F T R D Sbjct: 95 DCTDEVGTQRTGVVCNP-VVDLPEGVDRQLVDYCEGCLSLPGAYTDLARPDFSTCRGNDQ 153 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I A G L C QHE DH+NGI+F D L KR + + Sbjct: 154 YGNPIEITAGGTLGRCFQHEADHINGIVFGDRLPTRKRKQLYR 196 >gi|153855354|ref|ZP_01996503.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814] gi|149752174|gb|EDM62105.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814] Length = 157 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 81/138 (58%), Gaps = 6/138 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 F D +L + + + K+ LI++ML+ MY G+GLAA Q+G+L R+VVID+ + Sbjct: 9 FGDEVLNKECKEVTKMTLRTKVLINDMLDTMYEAMGVGLAAPQVGILKRIVVIDIGE--- 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+V INP I+ S + +EGCLS+P V R + V+ ++ + + I+ +G Sbjct: 66 --GPIVLINPVILETSGE-QTGEEGCLSLPGKAGIVTRPNYAKVKALNEDMEEVILEGEG 122 Query: 129 LLATCLQHELDHLNGILF 146 LLA HE+DHL+G L+ Sbjct: 123 LLARAFCHEIDHLDGKLY 140 >gi|307244489|ref|ZP_07526598.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678] gi|306492182|gb|EFM64226.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678] Length = 151 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +P+L + S+ + N + L+D+M + MY DG+GLAA Q+GVL R VV Sbjct: 1 MAIRNILKMGEPLLNKKSKQVVDFNDRLHTLLDDMADTMYKEDGVGLAAPQVGVLRRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INP I+ S + EGCLS+ DY +V R ++ V+ D + Sbjct: 61 VDIGE-----GLIELINPVIVETSGE-QTDLEGCLSVVDYIGEVTRPNYVKVKAQDRFGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + +G LA HE+DHL GILF++ + ++ Sbjct: 115 DIEVEGEGFLARAFCHEIDHLEGILFVERVEDTEK 149 >gi|255348717|ref|ZP_05380724.1| peptide deformylase [Chlamydia trachomatis 70] gi|255503257|ref|ZP_05381647.1| peptide deformylase [Chlamydia trachomatis 70s] gi|289525394|emb|CBJ14871.1| peptide deformylase [Chlamydia trachomatis Sweden2] gi|296434946|gb|ADH17124.1| peptide deformylase [Chlamydia trachomatis E/150] gi|296438666|gb|ADH20819.1| peptide deformylase [Chlamydia trachomatis E/11023] Length = 181 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 6/152 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 L + PIL +V+ P+ +I ++ L+ +M E M G+GLAA Q+G L ++ ++ Sbjct: 5 LEYYDSPILHKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIMGVER 64 Query: 66 HAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 P VFINP I S+ EGCLSIP R +V R ITV + + Sbjct: 65 ELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAKNLDG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Q + +G LA + HE DHL+G+L+ID +S Sbjct: 125 QQFSLALEGFLARIVMHETDHLHGVLYIDRMS 156 >gi|154509144|ref|ZP_02044786.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC 17982] gi|153798778|gb|EDN81198.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC 17982] Length = 163 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V PI +I ++ L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NP+I+ SDD + EGCLS+P+ +R+ + D + Sbjct: 61 WNIDGEIG-----YVLNPRIVALSDDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + ++ + L+A C+QHE DHL+G ++ID L R R Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRATR 151 >gi|117928486|ref|YP_873037.1| peptide deformylase [Acidothermus cellulolyticus 11B] gi|158512367|sp|A0LUE1|DEF_ACIC1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|117648949|gb|ABK53051.1| peptide deformylase [Acidothermus cellulolyticus 11B] Length = 180 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ LI +++E M G+GLAA QIGV R+ V Sbjct: 1 MAVRPIRLFGDPVLRTPAEPVTDFDKELRVLIKDLIETMQDAPGVGLAAPQIGVSLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ +NP + S++ EGCLS+P +KR+ + + + Sbjct: 61 YDVDGVVGH-----LVNPS-LDLSEEQQDGDEGCLSLPGLSYPLKRAKRAVAKGFNEFGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I+ LLA C+QHE DHL+G+LFID L +R + + + + Sbjct: 115 PVILEGSDLLARCVQHETDHLDGVLFIDRLDPEQRKLAMRAIRE 158 >gi|328884922|emb|CCA58161.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712] Length = 210 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 3/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ + +P+L + + + + + + LID+M + +G+GLAA QIGV ++ V D Sbjct: 36 RPITVVGNPVLHKECKDVTEFDDSLAALIDDMFASQKAAEGVGLAANQIGVDLKVFVYDC 95 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ V +NP + + V EGCLS+P A++ R + V D Sbjct: 96 PDDEGVRHTGVVVNPVLQELPAELRVLDESNEGCLSVPTAYAELARPDYAEVHGQDAQGN 155 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M + Sbjct: 156 PIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 199 >gi|312898702|ref|ZP_07758092.1| peptide deformylase [Megasphaera micronuciformis F0359] gi|310620621|gb|EFQ04191.1| peptide deformylase [Megasphaera micronuciformis F0359] Length = 176 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 7/145 (4%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 P+L++ + P++ I + L+D+M E MYS +G+GLAA Q+ ++VV+D N Sbjct: 34 PVLKKTAAPVKTITKRVKRLLDDMAETMYSAEGVGLAAPQVNESLQIVVLD------DGN 87 Query: 72 PMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 ++ INP+I+ S++ EGCLS+P DV R I V+ + + I +G L Sbjct: 88 GLIELINPEILDVSEETEYGPEGCLSVPGIYGDVSRYTKIKVQAKNRFGKTVIYEPEGFL 147 Query: 131 ATCLQHELDHLNGILFIDHLSRLKR 155 A QHE+DHL G LF + L++ Sbjct: 148 ARIFQHEMDHLKGHLFTEKAVNLRK 172 >gi|184157242|ref|YP_001845581.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU] gi|332872902|ref|ZP_08440866.1| peptide deformylase [Acinetobacter baumannii 6014059] gi|183208836|gb|ACC56234.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU] gi|193076693|gb|ABO11393.2| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978] gi|322507127|gb|ADX02581.1| Peptide deformylase 2 [Acinetobacter baumannii 1656-2] gi|323517106|gb|ADX91487.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii TCDC-AB0715] gi|332738913|gb|EGJ69776.1| peptide deformylase [Acinetobacter baumannii 6014059] Length = 160 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 13 ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + R++++ + + Sbjct: 14 ILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRIIIVASRPNPRY 73 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + V+Y+ + Sbjct: 74 PDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVET 133 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 G A +QHE+DHLNGILF++ +S Sbjct: 134 IFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|56416555|ref|YP_153629.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries] gi|222474923|ref|YP_002563338.1| Peptide deformylase [Anaplasma marginale str. Florida] gi|56387787|gb|AAV86374.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries] gi|222419059|gb|ACM49082.1| Peptide deformylase [Anaplasma marginale str. Florida] Length = 196 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 16/152 (10%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------Q 64 +L+ S PIEK++ +++ L+D M +V+ ++ +G +A+Q+GV R+ I++ Q Sbjct: 15 VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 74 Query: 65 D-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116 D H+ N +V +NP+I++FS + V EGCLS Y + R + ++Y D Sbjct: 75 DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 134 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID 148 +I A LA C+QHE+DHLNG+L + Sbjct: 135 LMGNECVIRAYNWLARCIQHEMDHLNGVLLAN 166 >gi|254994774|ref|ZP_05276964.1| Peptide deformylase [Anaplasma marginale str. Mississippi] gi|255002896|ref|ZP_05277860.1| Peptide deformylase [Anaplasma marginale str. Puerto Rico] gi|255004027|ref|ZP_05278828.1| Peptide deformylase [Anaplasma marginale str. Virginia] Length = 195 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 16/152 (10%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------Q 64 +L+ S PIEK++ +++ L+D M +V+ ++ +G +A+Q+GV R+ I++ Q Sbjct: 14 VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 73 Query: 65 D-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116 D H+ N +V +NP+I++FS + V EGCLS Y + R + ++Y D Sbjct: 74 DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 133 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID 148 +I A LA C+QHE+DHLNG+L + Sbjct: 134 LMGNECVIRAYNWLARCIQHEMDHLNGVLLAN 165 >gi|88606874|ref|YP_505573.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ] gi|88597937|gb|ABD43407.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ] Length = 197 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 16/158 (10%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------- 63 +L VS P+E ++S +++ M+++ D +GL+AVQ+G R+ VID+ Sbjct: 14 VLHTVSSPLESVDSATREIVNEMIKIAERGDTVGLSAVQLGYPIRVFVIDMFSGLFNITE 73 Query: 64 ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116 H+H +V INP+I++FS + EGCLS+ Y ++R + ++Y D Sbjct: 74 DLKVISGHHSHNTRSLVCINPQIVSFSGETVTLFEGCLSVKSYGMVGIQRPGNVDLKYTD 133 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +I LA C+QHE+DHLNG+L + L +K Sbjct: 134 LAGNVCVIRTFNWLARCVQHEMDHLNGVLLANMLDNIK 171 >gi|169796843|ref|YP_001714636.1| peptide deformylase 2 [Acinetobacter baumannii AYE] gi|213156766|ref|YP_002318427.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|215484319|ref|YP_002326548.1| peptide deformylase [Acinetobacter baumannii AB307-0294] gi|301345256|ref|ZP_07225997.1| peptide deformylase [Acinetobacter baumannii AB056] gi|301510240|ref|ZP_07235477.1| peptide deformylase [Acinetobacter baumannii AB058] gi|301594430|ref|ZP_07239438.1| peptide deformylase [Acinetobacter baumannii AB059] gi|332854474|ref|ZP_08435381.1| peptide deformylase [Acinetobacter baumannii 6013150] gi|332870910|ref|ZP_08439542.1| peptide deformylase [Acinetobacter baumannii 6013113] gi|169149770|emb|CAM87661.1| peptide deformylase 2 [Acinetobacter baumannii AYE] gi|213055926|gb|ACJ40828.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|213986720|gb|ACJ57019.1| peptide deformylase [Acinetobacter baumannii AB307-0294] gi|332727962|gb|EGJ59355.1| peptide deformylase [Acinetobacter baumannii 6013150] gi|332731873|gb|EGJ63152.1| peptide deformylase [Acinetobacter baumannii 6013113] Length = 160 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 13 ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + R++++ + + Sbjct: 14 ILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRVIIVASRPNPRY 73 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + V+Y+ + Sbjct: 74 PDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVET 133 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 G A +QHE+DHLNGILF++ +S Sbjct: 134 IFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|315651132|ref|ZP_07904164.1| peptide deformylase [Eubacterium saburreum DSM 3986] gi|315486597|gb|EFU76947.1| peptide deformylase [Eubacterium saburreum DSM 3986] Length = 174 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 7/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + + ++++N LI++M+E M G+GLAA QIGVL R+VV Sbjct: 9 MAIRAIRVMGDNVLNKKCKEVKEVNDRTKILIEDMIETMREAGGVGLAAPQIGVLKRIVV 68 Query: 61 IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I+ + D+ H V INP II D V EGCLS+P VKR ++ + D + Sbjct: 69 IETEPDNVH-----VLINPVIIK-QDGEQVGYEGCLSVPGKSGIVKRPNYVAAKAFDIDM 122 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 I +GLLA + HE HL+G L++D Sbjct: 123 NEYTIEGEGLLARAICHECAHLDGELYVD 151 >gi|302387077|ref|YP_003822899.1| peptide deformylase [Clostridium saccharolyticum WM1] gi|302197705|gb|ADL05276.1| peptide deformylase [Clostridium saccharolyticum WM1] Length = 163 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 83/140 (59%), Gaps = 6/140 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 + ILR+ ++ +E I++ ++ L+++M + MY +G+GLAA Q+GVL RLVVID+ Sbjct: 13 NTILRKQAKKVENIDNKVLTLLEDMADTMYQEEGVGLAAPQVGVLKRLVVIDIG-----A 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ S EGCLS+P +V R + ++ + + + LL Sbjct: 68 GLIKLINPEIMEQSGQQQGM-EGCLSVPGISGEVVRPQKVRIKAQNETGAYFELEGTDLL 126 Query: 131 ATCLQHELDHLNGILFIDHL 150 A + HE+DHLNG+LFID + Sbjct: 127 ARAICHEIDHLNGVLFIDKI 146 >gi|153875918|ref|ZP_02003500.1| Polypeptide deformylase [Beggiatoa sp. PS] gi|152067618|gb|EDN66500.1| Polypeptide deformylase [Beggiatoa sp. PS] Length = 174 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 12/163 (7%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID-- 62 L+I+PD L++VS + + + + ++ E M + G +G+AA Q+G R+V+ID Sbjct: 6 LLIYPDVRLKQVSASVRVFDEKLHAFLTDLEETMRAGLGSVGIAAPQVGYFERIVIIDVS 65 Query: 63 ----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ H H ++ +NP+I + F V +EGC+S+PDY +V R+ I + +D N Sbjct: 66 SKPKIKHHGH----LILVNPEITQWKG-FEVGREGCMSVPDYTGNVIRAKKIHLMALDEN 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 Q +G A +QHE+DHL+G+LF+D L + D+ ++ Sbjct: 121 GVQQEYDMEGYEARAVQHEIDHLDGLLFLDRLVSRRYDLFQRR 163 >gi|226510000|ref|NP_001140879.1| hypothetical protein LOC100272955 [Zea mays] gi|194701558|gb|ACF84863.1| unknown [Zea mays] Length = 256 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 17/167 (10%) Query: 1 MVKKPLVIFPDPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 MV V DP+L ++ P + ++ + +ID M++VM G+GLAA QIGV R Sbjct: 65 MVTPGTVKAGDPVLHEPAQEVAPGDVLSEKVQGVIDRMVDVMRRAPGVGLAAPQIGVPLR 124 Query: 58 LVVI-DLQDH----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 ++V+ D Q++ A + P +V INPKI + S +++ EGCLS+ YRA Sbjct: 125 IIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKIKSTSKRTALFFEGCLSVDGYRAV 184 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V+R + V +D N + A G A LQHE DHL G L++D + Sbjct: 185 VERHLDVEVSGLDRNGSTMKVRASGWQARILQHECDHLEGTLYVDKM 231 >gi|239929017|ref|ZP_04685970.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291437357|ref|ZP_06576747.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291340252|gb|EFE67208.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] Length = 216 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + R + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECRDVTEFDDELRKLVDDMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP+++ + EGCLS+P A + R + V D Sbjct: 100 DCPDDEGVRHVGVVCNPELVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEW 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKEALRQMAE 205 >gi|293608925|ref|ZP_06691228.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829498|gb|EFF87860.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 160 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 13 ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + R++++ + + Sbjct: 14 ILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRVIIVASRPNLRY 73 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A +V +NP+I+ FSD+ + +EGCLS+PD R V+R+ + V+Y+ + Sbjct: 74 PDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVKVKYLTLQGETVET 133 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 G A +QHE+DHLNGILF++ +S Sbjct: 134 IFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|269959028|ref|YP_003328817.1| putative polypeptide deformylase [Anaplasma centrale str. Israel] gi|269848859|gb|ACZ49503.1| putative polypeptide deformylase [Anaplasma centrale str. Israel] Length = 195 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 16/152 (10%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------Q 64 +L+ S P+EK++ +I L+D M +V+ ++ +G +A+Q+GV R+ I++ Q Sbjct: 14 VLQTKSSPVEKVDDEIFELVDRMAKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 73 Query: 65 D-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116 D H+ N +V +NP+I++FS + V EGCLS Y + R + ++Y D Sbjct: 74 DIKVLSGYHSLSGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 133 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID 148 +I A LA C+QHELDHLNG+L + Sbjct: 134 LMGNECVIRAYNWLARCIQHELDHLNGVLLAN 165 >gi|210617214|ref|ZP_03291458.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787] gi|210149415|gb|EEA80424.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787] Length = 161 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 83/141 (58%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L +V + + + LI++ML+ MY G+GLAA Q+G+L R+VVID+ + Sbjct: 11 DDVLEKVCKEVTDMTDRTKVLIEDMLDTMYDAMGVGLAAPQVGILKRIVVIDIGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P++ +NP+I+ + + +EGCLS+P V R ++ V+ ++ + + +GLL Sbjct: 66 GPIILVNPEILETAGE-QTGEEGCLSLPGKSGTVTRPNYVKVKALNEEMEEVVYEGEGLL 124 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A HE+DHL+G L+++ + Sbjct: 125 ARAFCHEIDHLDGHLYVEKVE 145 >gi|284989160|ref|YP_003407714.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] gi|284062405|gb|ADB73343.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] Length = 185 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 7/174 (4%) Query: 2 VKKPLVIF-PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 V +P+V + +P+L R P+ D+ L+ +M M + DG+GLAA QIGV R+ V Sbjct: 10 VARPIVTYGSNPVLHRPCAPVTAFGKDLRRLVLDMFASMEAADGVGLAANQIGVDARVFV 69 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFS-----VYQEGCLSIPDYRADVKRSAFITVRYM 115 ID D +NP++ V EGCLS+P A++ R+ V + Sbjct: 70 IDCPDADGEDVVGYVVNPELTVLEPREGEPAEEVTDEGCLSVPGPYAELPRAFRARVDGV 129 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168 D + I A G+ A CLQHE+DHL+G +++D L L+ ++ + + +L Sbjct: 130 DADGAPVSIEATGMAARCLQHEVDHLDGTVYVDRLPGDLRERLLAEAAGPVGEL 183 >gi|126348457|emb|CAJ90180.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC 23877] Length = 240 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 78/161 (48%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL I DP+L + ++ L++++ MY+ G+GLAA QIG R+ V D Sbjct: 53 RPLRILGDPVLHAPCEEVTDFGPELAALVEDLFATMYAAHGVGLAANQIGEPVRVFVYDC 112 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 113 PDDEDERHLGHVVNPRLVETGGVVVRGAEGCLSLPGLEAGTERHDEAVVTGFTVTGEPVT 172 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G +++D L+ +R + ++ ++ Sbjct: 173 VRGTGFFARCLQHECDHLEGGIYVDRLTGWRRRKVLRRAAR 213 >gi|284042341|ref|YP_003392681.1| peptide deformylase [Conexibacter woesei DSM 14684] gi|283946562|gb|ADB49306.1| peptide deformylase [Conexibacter woesei DSM 14684] Length = 190 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 86/148 (58%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 ++ DP+LR +RP+E+ + + +LI + V+ G GLAA Q+GVL R+VV + D Sbjct: 25 LWGDPVLRASARPVERFDDGLADLITRLRWVIDDATGAGLAAPQLGVLVRVVVYRVPDEE 84 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 V +NP I+ S + + + EGCLS+P A V+R A + V D + + + I A Sbjct: 85 RDGPARVLVNPAIVVRSAERTTFVEGCLSMPGIVAPVERCANVVVHACDEHGRAREIAAA 144 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKR 155 G A+ LQHELDHL+G+L D L+ R Sbjct: 145 GDHASVLQHELDHLDGVLLPDRLTPEHR 172 >gi|293189859|ref|ZP_06608573.1| peptide deformylase [Actinomyces odontolyticus F0309] gi|292821274|gb|EFF80219.1| peptide deformylase [Actinomyces odontolyticus F0309] Length = 163 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V PI +I ++ L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NP+I+ S+D + EGCLS+P+ +R+ + D +A Sbjct: 61 WNIDGEIG-----YVLNPRIVALSEDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDA 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + ++ + L+A C+QHE DHL+G ++ID L R R Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRATR 151 >gi|330444327|ref|YP_004377313.1| peptide deformylase [Chlamydophila pecorum E58] gi|328807437|gb|AEB41610.1| peptide deformylase [Chlamydophila pecorum E58] Length = 186 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 6/153 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 L + P+LR ++ I +I DI +L+ +M E M + G+GLAA QIG L V+ ++ Sbjct: 5 LEYYGSPVLREKAKEITEITEDIRSLVQDMYETMIAHKGVGLAAPQIGKSLSLFVMCVEG 64 Query: 66 HAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 P VFINP + + S+ + EGCLSIP R +V R +TV M+ + Sbjct: 65 ETPDGELIFCDFPKVFINPVLSSPSEHLVIAYEGCLSIPGLRGEVFRPDRVTVTAMNLDG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Q +G A + HE DHL+GIL+ID + Sbjct: 125 QKFSETLEGFPARIVMHETDHLHGILYIDRMEE 157 >gi|23010332|ref|ZP_00051057.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 164 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + PDP+LR I I+ + +L+ +++E + GLAA QIGV R Sbjct: 4 MAMREIRTIPDPVLRTPCDEITTIDDRVRSLVADLVETVDHEGRAGLAANQIGVNLRAFS 63 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ D +NP+I+ SDD+ EGCLS+PD +R+ + V D + Sbjct: 64 WNIDDEIG-----YVLNPRIVELSDDYQDGDEGCLSVPDLWYPTRRAWYARVVGTDLDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ L+A CLQH+ DHL+G+L++D L R R +++ + Sbjct: 119 EVVVEGTELMARCLQHKCDHLDGMLYLDRLDRSVRKKAMRELRE 162 >gi|260551188|ref|ZP_05825391.1| peptide deformylase 2 [Acinetobacter sp. RUH2624] gi|260405793|gb|EEW99282.1| peptide deformylase 2 [Acinetobacter sp. RUH2624] Length = 160 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 88/152 (57%), Gaps = 18/152 (11%) Query: 13 ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + R++++ A R Sbjct: 14 ILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRVIIV-----ASR 68 Query: 70 KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 NP +V +NP+I+ FS++ + +EGCLS+PD R V+R+ + V+Y+ Sbjct: 69 PNPRYPDAPEMDAVVMVNPEILEFSNEVCLGEEGCLSVPDERGQVERAEMVKVKYLTLQG 128 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + G A +QHE+DHLNGILF++ +S Sbjct: 129 ETIESVFHGFPARIVQHEIDHLNGILFVERIS 160 >gi|239503010|ref|ZP_04662320.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB900] Length = 160 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 86/147 (58%), Gaps = 8/147 (5%) Query: 13 ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 IL+ + P+ ++NS+ + L D M M +G+G+AA Q+ + R++++ + + Sbjct: 14 ILKLTAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRIIIVASRPNPRY 73 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + V+Y+ + Sbjct: 74 PDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVET 133 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 G A +QHE+DHLNGILF++ +S Sbjct: 134 IFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|226950032|ref|YP_002805123.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|226843262|gb|ACO85928.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] Length = 178 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 8/155 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDGITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 IDL++ + P++ INPK FS +EGCLS P Y V R + + ++ Sbjct: 83 IDLRNG---QEPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEK 136 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A GLL HE DHL+GI++ID ++ Sbjct: 137 GEEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 171 >gi|205373320|ref|ZP_03226124.1| peptide deformylase [Bacillus coahuilensis m4-4] Length = 161 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V P+ +L + + + + + L+DNM + M DG+GLAA QIG + ++D+ Sbjct: 5 PIVFHPNEVLEKECKRVTIFDKKLRKLLDNMYDTMIEADGVGLAAPQIGQDISVAIVDIG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D + + +NP+I+ ++ EGCLS P+ + R A++ V+ D + I Sbjct: 65 DDS---GIIELVNPEILE-TNGIETDIEGCLSFPNLYGTLTRPAYVKVKAQDRKGKAYTI 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF + R Sbjct: 121 EAEGFLARAIQHEIDHLHGVLFTSKVER 148 >gi|320096237|ref|ZP_08027821.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338] gi|319976818|gb|EFW08577.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338] Length = 163 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V P+ ++ + L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPVTEVTDSVRTLVEDLLEGVDMEGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NP I+ S+D + EGCLSIP+ KR+ + D + Sbjct: 61 YNIDGQIG-----YVLNPTIVELSEDEYQDGDEGCLSIPELWYPTKRAWYARCEGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + ++ + L+A C+QHE+DHLNG L+ID L R R Sbjct: 116 RPVVLEGEELMARCIQHEVDHLNGHLYIDRLERKVR 151 >gi|159037484|ref|YP_001536737.1| peptide deformylase [Salinispora arenicola CNS-205] gi|157916319|gb|ABV97746.1| peptide deformylase [Salinispora arenicola CNS-205] Length = 186 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ L+ ++ + M +G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLTDTMREQNGAGLAAPQLGVGLRVFA 60 Query: 61 IDLQDH-AHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D+ D H NP ++ F D + EGCLS+P D KR + R + + Sbjct: 61 FDVDDVIGHLVNP-------VLEFPDVEEQDGPEGCLSLPGLYFDTKRRQNVVARGFNGH 113 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I GL+A C+QHE DHL+G+LFID L R K + + Sbjct: 114 GDPVQIVGTGLMARCVQHETDHLDGVLFIDRLDAAGRKEAMKAIRQ 159 >gi|296140267|ref|YP_003647510.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] gi|296028401|gb|ADG79171.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] Length = 180 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+PDP+LR + + ++D+ L+D+M++ M+ +G GLAA Q+GV R+ V Sbjct: 5 PIRIYPDPVLRTRADEVTVFDADLARLVDDMIDTMHHHNGAGLAAPQVGVSKRVFVFGCG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 INP D+ EGCLSIP+ R + +D + + I Sbjct: 65 GREGH-----IINPVWRAVGDETQTGPEGCLSIPEILEPCTRHLNVVAEGVDVHGESLAI 119 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +LA C+QHE DHL+G+LF+ L R K + D Sbjct: 120 EGTEILARCIQHETDHLDGVLFLSRLEPEDRKRAMKAIRSAPWFTD 165 >gi|311113846|ref|YP_003985068.1| peptide deformylase [Rothia dentocariosa ATCC 17931] gi|310945340|gb|ADP41634.1| peptide deformylase [Rothia dentocariosa ATCC 17931] Length = 190 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 76/140 (54%), Gaps = 5/140 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR PI + ++ LID+ML+ MY +G+GLA QIG+ ++ D Sbjct: 11 DPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFTFGGIDGRE-- 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 INP + T ++ EGCLS+P ++D R + VR +D + ++ +GL Sbjct: 69 --GYIINPVLETGTEP-QEGGEGCLSVPGIKSDTPRMNWARVRGVDKTGKPLVLEGEGLF 125 Query: 131 ATCLQHELDHLNGILFIDHL 150 A LQHE DHL+G LFID L Sbjct: 126 ARMLQHETDHLHGKLFIDRL 145 >gi|188996826|ref|YP_001931077.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931893|gb|ACD66523.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] Length = 169 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M K ++ +PD L+R S + + I+ + MY S G+G+AA Q+ R + Sbjct: 1 MEKLEILKYPDERLKRKSIEVVDFGKEFKEFIEKLTYTMYNSPGGVGIAAPQVNNPIRTI 60 Query: 60 VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++D H+ N MV NPKI+ + +++EGC+S+PDY +VKR +I V Sbjct: 61 IVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEI-IFREGCMSVPDYTGNVKRFYYIKVEA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N +G A +QHE+DHL G +FI+ + K D+ +K+ K Sbjct: 120 QDINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKVYK 168 >gi|29833668|ref|NP_828302.1| polypeptide deformylase [Streptomyces avermitilis MA-4680] gi|39931074|sp|Q826Q0|DEF2_STRAW RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|29610792|dbj|BAC74837.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680] Length = 186 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 81/161 (50%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL + DP+L + ++ L+++M MY+ +G+GLAA QIGV R+ V D Sbjct: 14 RPLALLGDPVLHAPCEEVTDHGPELARLVEDMFATMYAANGVGLAANQIGVPLRVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP++I EGCLS+P A +R V + + Sbjct: 74 PDDEDVRHVGHVVNPRLIEADGVVLRGPEGCLSLPGLEAGTERYDRAVVEGFTTDGEPVR 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL+G +++D +S + + ++ ++ Sbjct: 134 VLGTGWFARCLQHECDHLDGGVYVDRVSGWRHRRVMRQAAR 174 >gi|152964372|ref|YP_001360156.1| peptide deformylase [Kineococcus radiotolerans SRS30216] gi|151358889|gb|ABS01892.1| peptide deformylase [Kineococcus radiotolerans SRS30216] Length = 200 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 13/167 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 V P+ + P+L R + P+ + D++ L+ +M M + DG+GLAA QIGV R+ V+ Sbjct: 24 VVHPITRYFTPVLHRPTTPVTSFDEDLVQLVADMFASMDAADGVGLAANQIGVDARVFVV 83 Query: 62 DLQDH----------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 D D AH NP++ + + EGCLS+P AD+ R T Sbjct: 84 DCPDDDTERTGENVVAHVVNPVLELP---TGRRRRLDLDGEGCLSVPGEYADLARPDKAT 140 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 V D + I GLLA CLQHE DHL+G++++D L +R I Sbjct: 141 VTGKDVHGNPVKIVGTGLLARCLQHESDHLDGVVYVDRLPAEQRAEI 187 >gi|296331148|ref|ZP_06873622.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674303|ref|YP_003865975.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151792|gb|EFG92667.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412547|gb|ADM37666.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 160 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R+ V Sbjct: 1 MAVKKVVTHPAEVLETPTESVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D++ R + +NP+I+ S + EGCLS P DV R+ ++ VR + + Sbjct: 61 VDIGDNSGRID---LVNPEILEKSGE-QTGIEGCLSFPGVYGDVTRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|209965357|ref|YP_002298272.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] gi|209958823|gb|ACI99459.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] Length = 186 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 8/159 (5%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAHR 69 P+LRR ++P+E I + + +M+E M GIGLAA Q+ V +R+VV + D A Sbjct: 12 PVLRRPAQPVETPIPAVVRQFALDMIETMVDAPGIGLAAPQVHVGWRIVVFRVPGDRATG 71 Query: 70 K------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P V +NP S++ EGCLSIP R V R A I R + + Sbjct: 72 GAGDLPMEPQVLVNPAYEPLSEEMVEGWEGCLSIPGLRGVVPRFARIRYRGLSLDGTAVE 131 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 A G A +QHE+DHL+GIL+ID + L R T++M Sbjct: 132 REASGTHARVVQHEIDHLDGILYIDRMPDLTRLTFTEEM 170 >gi|145594411|ref|YP_001158708.1| peptide deformylase [Salinispora tropica CNB-440] gi|145303748|gb|ABP54330.1| peptide deformylase [Salinispora tropica CNB-440] Length = 186 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 9/166 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ L+ ++++ M +G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLIDTMREQNGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDH-AHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D+ D H NP ++ F D + EGCLS+P D KR + + + Sbjct: 61 FDVDDVVGHLVNP-------VLEFPDAEEQDGPEGCLSLPGLYFDTKRRQNVVAKGFNGY 113 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I GL+A C+QHE DHL+G+LFID L R K++ + Sbjct: 114 GDPMQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKEIRR 159 >gi|320333260|ref|YP_004169971.1| peptide deformylase [Deinococcus maricopensis DSM 21211] gi|319754549|gb|ADV66306.1| Peptide deformylase [Deinococcus maricopensis DSM 21211] Length = 214 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 27/171 (15%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM----------NLIDNMLEVMYSTDGIGLAAVQIGV 54 P+ ++ DPILR+ +R IE + + + + MLE MY G+GLAA Q+G+ Sbjct: 11 PIRLYGDPILRKKARAIEDLQAPLTIPGFAPAALAQVARTMLETMYDAHGVGLAAPQVGL 70 Query: 55 LYRLVVI----DLQDHAHRKNPM--------VFINP--KIITFSDDFSVYQEGCLSIPD- 99 R+ V D +D + P+ V INP +++ D S YQEGCLSIP Sbjct: 71 GVRMFVAAEYADDEDEGQ-ETPLRSRVLREFVAINPVLEVLNKKKD-SHYQEGCLSIPGI 128 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Y VKR + + Y++ + Q +++ A+ LA QHE+DHL+G F+D L Sbjct: 129 YEEGVKRDRAVRMTYLNLDGQRKVVEAEDYLARVFQHEVDHLDGRFFLDRL 179 >gi|294631322|ref|ZP_06709882.1| peptide deformylase [Streptomyces sp. e14] gi|292834655|gb|EFF93004.1| peptide deformylase [Streptomyces sp. e14] Length = 216 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 ASRPITVVGNPVLHKECKDVTEFGEELQQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NPK++ D EGCLS+P A + R + V D Sbjct: 100 DCMDDEGVRHVGVVCNPKLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDER 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNAIKVRGTGYFARCLQHETDHLYGQLYIDRLSKRERKDALRQMAE 205 >gi|39930960|sp|Q7NJV3|DEF1_GLOVI RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 Length = 227 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH 66 DP+LR ++P+ ++I S+ I LI M E M G+GLAA Q+GV +LVVI D ++ Sbjct: 53 DPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIEDRPEY 112 Query: 67 AHR----------KNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R + P+ F INP + ++ +V+ EGCLSIP Y+ V R+ + V Sbjct: 113 IERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARARVVRVE 172 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D A +I A G A LQHE+DHLNG+L +D + Sbjct: 173 ALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRM 209 >gi|108759554|ref|YP_631592.1| peptide deformylase [Myxococcus xanthus DK 1622] gi|108463434|gb|ABF88619.1| peptide deformylase [Myxococcus xanthus DK 1622] Length = 201 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 17/158 (10%) Query: 11 DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+LRR +R P E + + LI+ M + M G+GLAA Q+GV R+VVI+ Sbjct: 10 DPVLRRKARDLTPEEIASPETARLIEQMRDTMRDAPGVGLAAPQVGVGLRVVVIEDRPEY 69 Query: 63 ------LQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P+ F INP+++ + + EGCLS+ + A V R+ + V Sbjct: 70 QAGLSESERAARGRKPVPFHVLINPRLVVEDAAPAEFHEGCLSVSGFAALVPRACAVRVD 129 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +D + Q + A G A LQHELDHL+G L++D + Sbjct: 130 ALDEHGQPVTVQARGWYARILQHELDHLDGTLYVDRME 167 >gi|320008651|gb|ADW03501.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331] Length = 212 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECSDVTEFGDELAQLIDDMFASQRTAEGVGLAANQIGVDRKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ NP + + + EGCLS+P A + R + VR D Sbjct: 96 DCPDDDGVRHVGAICNPVLEELAPERRNLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R K+M++ Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMAE 201 >gi|218507890|ref|ZP_03505768.1| peptide deformylase [Rhizobium etli Brasil 5] Length = 155 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 P P L+ V P+ ++ + L D++L M + G+G+ A IGV R++V++L D A Sbjct: 1 PHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMVLEL-DRA-- 57 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 +++NP I S + ++ EG +S+P D+ R I RY D + + A+ Sbjct: 58 DGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDITRPRAIRFRYQDVDGRMHDEAAEDF 117 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 LAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 152 >gi|291518517|emb|CBK73738.1| peptide deformylase [Butyrivibrio fibrisolvens 16/4] Length = 164 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 82/141 (58%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L + +P++++ + LID+M + MY DG+GLAA Q+GVL R+ VID+ + Sbjct: 12 DDVLLKTCKPVKELTPKLRTLIDDMYDTMYDADGVGLAAPQVGVLRRICVIDIGE----- 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+ INP ++ S + EGCLS+P V R + V+ ++ + + I+ + L+ Sbjct: 67 GPVTLINPVVLETSGE-QTGNEGCLSVPGKTGIVTRPNYAKVKALNEDMEEFIVEGEELM 125 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A L HE+DHL+G ++ + + Sbjct: 126 ARALLHEIDHLDGHIYTEKVE 146 >gi|20150600|pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150601|pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150602|pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150603|pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150604|pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150605|pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150606|pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150607|pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150608|pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150609|pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design Length = 183 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 3/163 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V +PDPILRR S + + ++ ++ ++ Y + GIGL+A Q+ + R++V + L Sbjct: 5 IVKYPDPILRRRSE-VTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNALY 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +N +FINP I+ S EGCLS V+R + +++ Y D N + Sbjct: 64 EKRKEENERIFINPSIVEQSLVKLKLIEGCLSF-GIEGKVERPSIVSISYYDINGYKHLK 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID +++ + + K+++L++ Sbjct: 123 ILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 165 >gi|172057935|ref|YP_001814395.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15] gi|171990456|gb|ACB61378.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15] Length = 461 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 4/145 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +LR+ + + K + + +ID M + MY DG+GLAA QI R+ V+ D Sbjct: 4 VVEVPNEVLRQKCQRVTKFDKKLGKMIDRMFDTMYEYDGVGLAAPQINQPIRVAVVHTDD 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+II + + EGCLS+P V+R I V+ D + I Sbjct: 64 ET---GPIELINPEIIEATGS-EIDDEGCLSMPGIFGPVERFEQIVVKSQDRLGRSVKIK 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150 A+G A +QHE+DHL+G+LF D L Sbjct: 120 ANGFFARAIQHEMDHLDGVLFTDKL 144 >gi|83855042|ref|ZP_00948572.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] gi|83842885|gb|EAP82052.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] Length = 145 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 85/146 (58%), Gaps = 6/146 (4%) Query: 21 IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 + +IN +I L D+M++ M + G+GLAA QIGV ++ V+D R + NP + Sbjct: 1 MAEINDEIRALWDDMIDTMDAMPGVGLAAPQIGVSLQVAVVDASQA--RDKRIRLANPVV 58 Query: 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD--GLLATCLQHEL 138 I S + Y+E ++P A ++R + VRY+D Q + D GL AT +QH++ Sbjct: 59 IDASAIMNEYEEASPNLPGISAKIRRPRGVKVRYLD--EQGATVTRDFVGLEATSVQHQI 116 Query: 139 DHLNGILFIDHLSRLKRDMITKKMSK 164 DHL G +F+D+LS+ +RDM+ +K K Sbjct: 117 DHLAGKMFVDNLSKTRRDMLLRKARK 142 >gi|238063927|ref|ZP_04608636.1| peptide deformylase [Micromonospora sp. ATCC 39149] gi|237885738|gb|EEP74566.1| peptide deformylase [Micromonospora sp. ATCC 39149] Length = 185 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ ++++ L+ ++ + M +G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDAELRRLVADLTDTMREQNGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQD-HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D+ D H NP ++ F D + EGCLSIP D KR + + + Sbjct: 61 FDVDDVLGHLVNP-------VLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVVAKGFNGY 113 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I GL+A C+QHE DHL+G+LF+D L R K + + Sbjct: 114 GDPVQIVGTGLMARCVQHETDHLDGVLFVDRLDPAGRKEAMKAIRQ 159 >gi|297559276|ref|YP_003678250.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843724|gb|ADH65744.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 184 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V F DP+L + P+ + + L+D++LE + + GLAA QIGV R+ Sbjct: 1 MTMRPIVRFGDPVLVTPTTPVTRFDKHTRALVDDLLETVEAPGRAGLAANQIGVGLRVFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ INP+I S++ EGCLS+P R+ + V +D + Sbjct: 61 YNVEGRIG-----YVINPRIAELSEEVQEGDEGCLSVPRLWYPATRAEYAVVTGVDLRNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + GL+A CLQHE DHL+G+++I+ L R Sbjct: 116 PVTVEGTGLMARCLQHETDHLDGMVYIERLDPQTR 150 >gi|260428274|ref|ZP_05782253.1| peptide deformylase [Citreicella sp. SE45] gi|260422766|gb|EEX16017.1| peptide deformylase [Citreicella sp. SE45] Length = 166 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 5/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++++PD R+ +P E + +++ L+ ++ E MY G GLAA Q+GVL R+ Sbjct: 1 MSLREILLWPD---ERLKQPCETVADVAEVEQLVTDLFETMYDAPGRGLAAPQVGVLKRV 57 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 V+D P+ INP+I+ S++ + EGCLSIP A V+R + + + D + Sbjct: 58 FVMDAGWKEGDMVPLACINPEIVEVSEETASGPEGCLSIPGVTAQVRRPVRVRMAFTDLS 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Q +G A QHE DHL G++ D L Sbjct: 118 GTRQERDFEGSEAIVAQHEYDHLEGLVHFDRL 149 >gi|67924995|ref|ZP_00518380.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] gi|67853169|gb|EAM48543.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] Length = 173 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 6/148 (4%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 +PILR+ ++ ++ + + + L+D +L +G+G+AA Q+ YRL V+ + Sbjct: 13 NPILRQQAQLVQDLTDQKLQQLMDTLLTTARDANGVGIAAPQVSQSYRLFVVCSHPNPRY 72 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A +P + INP+II+ +D+ EGCLS+P R V R ITV Y+D + Q Sbjct: 73 PDAPMMDPTIMINPRIISHNDEIVKGWEGCLSVPGVRGLVPRYKVITVEYLDRYGKLQQQ 132 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 +A QHELDHLNGILFID + + Sbjct: 133 KLKDFVARIFQHELDHLNGILFIDRVDK 160 >gi|302866831|ref|YP_003835468.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315503246|ref|YP_004082133.1| peptide deformylase [Micromonospora sp. L5] gi|302569690|gb|ADL45892.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315409865|gb|ADU07982.1| peptide deformylase [Micromonospora sp. L5] Length = 186 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 9/166 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ ++++ LI ++ + M G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDAELRKLIADLTDTMREQSGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQD-HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D+ D H NP ++ F D + EGCLSIP D KR + + + Sbjct: 61 FDVDDVLGHLVNP-------VLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVIAKGFNGY 113 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I GL+A C+QHE DHL+G+LF+D L R K + + Sbjct: 114 GDPLQIVGTGLMARCVQHETDHLDGVLFVDRLDAAGRKEAMKAIRQ 159 >gi|218661137|ref|ZP_03517067.1| peptide deformylase [Rhizobium etli IE4771] Length = 184 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L+ V P+ + + L D++L M + G+G+ A IGV R+ V Sbjct: 21 MPVRPILRYPHQGLKTVCAPVTAFDDSLAALADDLLATMRAAPGVGITAAHIGVSLRVTV 80 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +++NP+I S + ++ EG +S+P +V R I RY D + + Sbjct: 81 LELDKTDGVR---LYVNPEITWQSQETMIHTEGSVSMPGATDEVTRPRAIRFRYQDADGK 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 138 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 181 >gi|291484124|dbj|BAI85199.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195] Length = 160 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + +NP+I+ S + + EGCLS P DVKR+ ++ VR + + Sbjct: 61 VDIGDDRGRID---LVNPEILERSGEQTGI-EGCLSFPGVYGDVKRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|17229499|ref|NP_486047.1| polypeptide deformylase [Nostoc sp. PCC 7120] gi|23396565|sp|Q8YVH1|DEF2_ANASP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|17131097|dbj|BAB73706.1| polypeptide deformylase [Nostoc sp. PCC 7120] Length = 179 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 10/170 (5%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++ +P LR+ + +E I ++ I LID+++ + +G+G+A+ Q+ YRL ++ Sbjct: 7 PIIQLGNPTLRQKAAWVENIHDATIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIVAS 66 Query: 64 QD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD-- 116 + HA P INPKI+ S + EGCLS+P R V R I V Y D Sbjct: 67 RPNPRYPHAPEMEPTAMINPKIVGHSTEIVEGWEGCLSVPGIRGLVPRHQAIEVEYTDRY 126 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 N Q Q + +A QHE DHL+G+LFID + + ++ +LV Sbjct: 127 GNLQKQTL--TDFVARIFQHEFDHLDGVLFIDRVESNLNTITEEEYQELV 174 >gi|290957509|ref|YP_003488691.1| polypeptide deformylase [Streptomyces scabiei 87.22] gi|260647035|emb|CBG70134.1| putative polypeptide deformylase [Streptomyces scabiei 87.22] Length = 216 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 3/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + +P+L + + + + ++ L+D+M + +G+GLAA Q+GV ++ V D Sbjct: 43 PITVVGNPVLHKECKDVTEFGDELAKLVDDMFASQRTAEGVGLAANQVGVDLKVFVYDCP 102 Query: 65 DHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D +++ V NPK++ + EGCLS+P + R + V D Sbjct: 103 DDEGKRHTGVICNPKLVELPAEARRLDDSNEGCLSVPTAYMPLARPDYAEVTGQDEKGNP 162 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 163 IKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205 >gi|239626610|ref|ZP_04669641.1| peptide deformylase [Clostridiales bacterium 1_7_47_FAA] gi|239516756|gb|EEQ56622.1| peptide deformylase [Clostridiales bacterium 1_7_47FAA] Length = 153 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 84/139 (60%), Gaps = 7/139 (5%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69 DPILR+ + ++ ++ I L+D+M E ++ T+ G LAA Q+G+L RLVVID D+ H Sbjct: 11 DPILRKRCKEVKTVDDKIRLLLDDMAETLHHTENGAALAANQVGILKRLVVIDYCDY-HL 69 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 K +NP+II +S EGCLS P+ R +T++ +D N + II + Sbjct: 70 K----LVNPQIIGYSG-VQECIEGCLSFPNRFVKTIRPQKVTIQSLDENGKEIIITGENE 124 Query: 130 LATCLQHELDHLNGILFID 148 +A C HEL+HL+GI+F+D Sbjct: 125 MAKCFCHELEHLDGIIFLD 143 >gi|213965569|ref|ZP_03393763.1| peptide deformylase [Corynebacterium amycolatum SK46] gi|213951728|gb|EEB63116.1| peptide deformylase [Corynebacterium amycolatum SK46] Length = 167 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 8/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+L + + ++ + +LID+M + M G+GLAA Q+GVL R+ V Sbjct: 1 MAVREVRLFGDPVLLSKAETVTDFDATLSHLIDDMFDTMDEQQGVGLAANQVGVLQRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + R + +NP+ D+ EGCLSIP V R A + V D + Sbjct: 61 YDC--NGTRGH---IVNPEWEAIGDETVHEIEGCLSIPGINGPVTRHARVRVTGQDRHGT 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHE DHL+G+LF L RL+ D M L Sbjct: 116 PVSFEADDLLARCVQHESDHLDGVLF---LKRLEGDERKTAMRSL 157 >gi|170781968|ref|YP_001710300.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] gi|169156536|emb|CAQ01687.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] Length = 188 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +R ++ + D+ +L+ +M E M G+GLAA Q+GV R+ V Sbjct: 1 MAVLPIRITGDPVLHAPARDVQAFDDDLRSLVADMYETMDEAPGVGLAAPQVGVPLRVFV 60 Query: 61 IDLQDHAHRK------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + NP +FI P + +D+ +EGCLS P R + R+ +R Sbjct: 61 YSYETDDGEPLRGVAVNPDLFITPVAVREADE-DTEEEGCLSFPGERFPLVRADRAILRA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D + + I A G A LQHE DHL+G+L+ D L+ R + K + K Sbjct: 120 VDLDGRPYEIEAAGWFARILQHEYDHLDGLLYTDRLAHEHRKPVAKVIRK 169 >gi|57238913|ref|YP_180049.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] gi|58578845|ref|YP_197057.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] gi|58616903|ref|YP_196102.1| peptide deformylase 1 [Ehrlichia ruminantium str. Gardel] gi|57160992|emb|CAH57898.1| putative peptide deformylase 2 [Ehrlichia ruminantium str. Welgevonden] gi|58416515|emb|CAI27628.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Gardel] gi|58417471|emb|CAI26675.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] Length = 194 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 16/158 (10%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------QD 65 L +S PIEKI+ D++ L D+M++VM ++ +GL+AVQ+G R+ VI++ QD Sbjct: 15 LHAISHPIEKIDQDVIALADDMMKVMENSKTVGLSAVQLGSHKRMFVINMFSGLFDMTQD 74 Query: 66 -------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDC 117 H+ MV INP+I++FS + EGC S Y ++ R + RY D Sbjct: 75 IKVLSGHHSLHGKNMVCINPEILSFSAETVDLFEGCSSAKSYGLINITRPRHMDFRYTDL 134 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 II G L+ C+QHE+DHLNGIL + + +K Sbjct: 135 FGNKCIIRVYGWLSRCIQHEMDHLNGILLANVVDNIKN 172 >gi|256826367|ref|YP_003150327.1| peptide deformylase [Kytococcus sedentarius DSM 20547] gi|256689760|gb|ACV07562.1| peptide deformylase [Kytococcus sedentarius DSM 20547] Length = 192 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 13/173 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I L + ++ + ++ +I L+ +M + M + +G+GLAA Q+GV +R+ V Sbjct: 1 MAVRPITIIGHKALHQPTKKVREVTDEIRTLVADMFDTMEAAEGVGLAANQVGVRWRIFV 60 Query: 61 IDLQDHAHRKNP---MVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 D H P V +NP + S D EGCLS+P RS + V Sbjct: 61 YDCT-HDPEAGPDARGVVVNPVLEKEHVSPLSADPEADHEGCLSVPGESFPTARSDWARV 119 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS----RLKRDMITKK 161 D + + GLL CLQHE DHL+G L+++ LS R RD I ++ Sbjct: 120 TGTDLDGNAISVEGTGLLGRCLQHETDHLDGHLYVERLSPEDKRRARDAIKER 172 >gi|194014710|ref|ZP_03053327.1| peptide deformylase [Bacillus pumilus ATCC 7061] gi|194013736|gb|EDW23301.1| peptide deformylase [Bacillus pumilus ATCC 7061] Length = 160 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+V+ P +L + + P++ + + L+D+M + M DG+GLAA QIG+ R+ V Sbjct: 1 MAVKPIVMHPAEVLEQKAEPVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + R + +NP+++ + EGCLS P V+R +++ V+ D + Sbjct: 61 VDIGEEPGRID---LVNPEVLEIKGSQTDI-EGCLSFPSLYGTVERPSYVKVKAFDKKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 I A+G LA L HE+DHL+GILF S++ + K+++++ Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFT---SKIIQTYTEKELAEM 158 >gi|260555892|ref|ZP_05828112.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606] gi|260410803|gb|EEX04101.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606] Length = 160 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 13 ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + R++++ + + Sbjct: 14 ILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRVIIVASRPNPRY 73 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + V+Y+ + Sbjct: 74 PDAPEMNAVVMVNPEILEFSSEMCLGEEGCLSVPDERGQVERAEMVKVKYLTLQGETVET 133 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 G A +QHE+DHL+GILF++ +S Sbjct: 134 IFHGFPARIVQHEVDHLDGILFVERIS 160 >gi|261749262|ref|YP_003256947.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497354|gb|ACX83804.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 180 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 7/154 (4%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V++ +PILR+ + I I L+ +M E ++ GIGLAA QIG RL +++ Sbjct: 4 PIVVYGNPILRKKCIDIDIYSCRKKIQELVKDMFETIHKVKGIGLAAPQIGKNIRLFIVE 63 Query: 63 ----LQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 L++ N VFIN +I+ + EGCLSIP VKR + +++ Y D Sbjct: 64 TPYLLENGKDIDNYKEVFINARILKIHGKEYEFNEGCLSIPGIMGYVKRKSHVSIEYYDH 123 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 N + + G+ A +QHE DH+ G LFID+ S Sbjct: 124 NWKKKKETLKGICARVIQHEYDHMEGKLFIDYFS 157 >gi|254518787|ref|ZP_05130843.1| peptide deformylase [Clostridium sp. 7_2_43FAA] gi|226912536|gb|EEH97737.1| peptide deformylase [Clostridium sp. 7_2_43FAA] Length = 150 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 90/152 (59%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + +F ILR+ S+ + ++ I ++++M + MY+T+ G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFGGEILRKRSKEVLVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NP+II + EGCL+ P+ +KR A +T++ ++ Sbjct: 61 VIDMG-----QGLIKLVNPRIIK-KEGIQEVIEGCLNYPNRWGKLKRPAKVTIQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ G LA C HE+DHL+GILF D ++ Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLDGILFTDFVT 146 >gi|308177754|ref|YP_003917160.1| peptide deformylase [Arthrobacter arilaitensis Re117] gi|307745217|emb|CBT76189.1| peptide deformylase [Arthrobacter arilaitensis Re117] Length = 187 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 9/146 (6%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDH 66 I DP+LR ++ + ++ L+++M + M + G GLAA Q+GV R+ Q+ Sbjct: 8 IIGDPVLRTPAQEVTDFGPELQKLVEDMDQTMENVTGAGLAAPQVGVSLRVFTYQTGQER 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H NP ++ S+D+ Q EGCLSIP A V+R + D I Sbjct: 68 GHIVNP-------VLELSEDYQEDQVEGCLSIPGIAAPVRRRRHVKATGFDKFGNPVEIE 120 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 DGLLA C QHE DHL+GILF+D L Sbjct: 121 GDGLLARCFQHETDHLDGILFLDRLE 146 >gi|197302409|ref|ZP_03167465.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC 29176] gi|197298530|gb|EDY33074.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC 29176] Length = 159 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D IL + + ++K+ LI +ML+ MY G+GLAA Q+G+L ++VVID+ + Sbjct: 11 DEILGKQCKEVKKMTIRTKILIGDMLDTMYEKMGVGLAAPQVGILKQIVVIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+II S + +EGCLS+P V R ++ VR ++ + I +GLL Sbjct: 66 GPIVLINPEIIETSGE-QTGEEGCLSVPGKWGIVTRPNYVKVRALNEEMEEFEIEGEGLL 124 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A HE+DHL+G L++D + Sbjct: 125 ARAFCHEIDHLSGHLYVDKVE 145 >gi|312195559|ref|YP_004015620.1| peptide deformylase [Frankia sp. EuI1c] gi|311226895|gb|ADP79750.1| peptide deformylase [Frankia sp. EuI1c] Length = 183 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR + + + ++ L++++ E M+ G GLAA Q+GV R+ Sbjct: 1 MAVRDIRLFGDPVLRTKAEQVTTFDKELRKLVNDLGETMWEASGAGLAAPQLGVSLRVFT 60 Query: 61 I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D DH INP + FS++ +EGCLS+P ++KR + + Sbjct: 61 FLDDDDEIDH--------LINPVLGPFSEELQDGEEGCLSLPGLSFELKRPERVLAIGQN 112 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G+++ CLQHE DHL+GILFID L R + K + + Sbjct: 113 MYGDPVQVEGSGIVSRCLQHETDHLDGILFIDKLDRETKKAAMKAIRE 160 >gi|329939688|ref|ZP_08288989.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] gi|329301258|gb|EGG45153.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] Length = 216 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTEFDEELAKLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NPK++ + EGCLS+P + R + V D Sbjct: 100 DCPDDEGVRHVGVVCNPKLVELPAERRRLDDNNEGCLSVPTAYVSLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205 >gi|300741742|ref|ZP_07071763.1| peptide deformylase [Rothia dentocariosa M567] gi|300380927|gb|EFJ77489.1| peptide deformylase [Rothia dentocariosa M567] Length = 190 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 76/140 (54%), Gaps = 5/140 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR PI + ++ LID+ML+ MY +G+GLA QIG+ ++ D Sbjct: 11 DPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFTFGGIDDRE-- 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 INP + T ++ EGCLS+P ++D R + VR +D + ++ +GL Sbjct: 69 --GYIINPVLETGTEP-QEGGEGCLSVPGMKSDTPRMNWARVRGVDKMGKPLVLEGEGLF 125 Query: 131 ATCLQHELDHLNGILFIDHL 150 A LQHE DHL+G LFID L Sbjct: 126 ARMLQHETDHLHGKLFIDRL 145 >gi|37521298|ref|NP_924675.1| peptide deformylase [Gloeobacter violaceus PCC 7421] gi|35212295|dbj|BAC89670.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421] Length = 275 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH 66 DP+LR ++P+ ++I S+ I LI M E M G+GLAA Q+GV +LVVI D ++ Sbjct: 101 DPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIEDRPEY 160 Query: 67 AHR----------KNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R + P+ F INP + ++ +V+ EGCLSIP Y+ V R+ + V Sbjct: 161 IERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARARVVRVE 220 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D A +I A G A LQHE+DHLNG+L +D + Sbjct: 221 ALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRM 257 >gi|54309245|ref|YP_130265.1| polypeptide deformylase [Photobacterium profundum SS9] gi|46913677|emb|CAG20463.1| hypothetical polypeptide deformylase [Photobacterium profundum SS9] Length = 175 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 84/151 (55%), Gaps = 10/151 (6%) Query: 11 DPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQ 64 +P+LR + + + + + L+ ++ ++M S G+G+AA Q+G R ++ D Sbjct: 12 NPLLRVPAEALSAVQIETALPLLKSLEQIMLSHQGVGIAAPQVGQPLRAFIVASRPNDRY 71 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 HA P + INP+++ S++ EGCLSIP RA V R I VRY+ NA +I Sbjct: 72 PHAPLMEPTIMINPELLWQSEEMEKDWEGCLSIPGIRAKVNRYTHIRVRYL--NASGDVI 129 Query: 125 YAD--GLLATCLQHELDHLNGILFIDHLSRL 153 + G +A QHELDHLNGI+F+D +L Sbjct: 130 ETEFTGFIARIFQHELDHLNGIVFLDRADKL 160 >gi|325188477|emb|CCA23012.1| unnamed protein product [Albugo laibachii Nc14] Length = 179 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 4/154 (2%) Query: 1 MVKKP--LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 KKP L+ + LRR+ P+ + ++ L + M + + DG+G+AA Q+G R Sbjct: 3 FAKKPFELIFLGNSALRRICEPVFDVKCPEMKRLAEAMRKQLIEQDGVGIAAPQLGANCR 62 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 L ++ +++ VF NPK+ FS + EGCLS+P Y VKRS I V+Y Sbjct: 63 LFLMSMEESNVSALEAVF-NPKVTFFSKEMEKDFEGCLSVPHYSGIVKRSREIQVQYSTA 121 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +G A QHELDHLNG+LF+D + Sbjct: 122 LGMKEKRTLEGFPARVFQHELDHLNGVLFLDKVE 155 >gi|296120519|ref|YP_003628297.1| peptide deformylase [Planctomyces limnophilus DSM 3776] gi|296012859|gb|ADG66098.1| peptide deformylase [Planctomyces limnophilus DSM 3776] Length = 196 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 6/155 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64 +V + P LR S P+ +INS++ I M E+MY+ GIGLA+ Q+ + + +++L Sbjct: 5 IVKYGHPALRHKSTPVTEINSELRKAIAEMFELMYAAKGIGLASNQVAIPRQFFILNLTG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD----CNAQ 120 D A + +VFINP I+ +EGCLS P VKR+ + + D C Sbjct: 65 DAAEKDEEVVFINPVILNRKSSCE-GEEGCLSFPGLYGPVKRAGEVLIEAFDLDGNCFEM 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D L +QHE DHL+G+LFID ++ R Sbjct: 124 TLSAKEDDLAVRAVQHESDHLDGMLFIDRMTDRAR 158 >gi|134098682|ref|YP_001104343.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|291003631|ref|ZP_06561604.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|133911305|emb|CAM01418.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] Length = 182 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 5/162 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + + ++ NL+ ++ + M G G+AA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTRAEEVVDFDKELRNLVQDLWDTMEDQGGAGIAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 A +NP ++ EGCLSIP D +R + R + + + Sbjct: 61 YHCDGFAGH-----LVNPTFTAVDEELQFGPEGCLSIPGMSWDCERYRNVVARGWNMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 I LLA C+QHE DHL+G+LF+D L R +++ Sbjct: 116 PVEIEGTDLLARCIQHETDHLDGVLFVDRLDEQTRKAAMREI 157 >gi|302037899|ref|YP_003798221.1| peptide deformylase [Candidatus Nitrospira defluvii] gi|300605963|emb|CBK42296.1| Peptide deformylase [Candidatus Nitrospira defluvii] Length = 163 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 3/163 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L+ + + + + ++ +ML+ + ++ G+ LAA QIG +++V Sbjct: 1 MAIRPILQYPHQALKSTNAAVAPSDPAVQAVVQDMLDTLAASPGVALAAPQIGHAVQVIV 60 Query: 61 IDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ + +V +NP I++ SV +EGCLS+PDY +V R V + Sbjct: 61 VDVSRKKGERGHGLVVLLNPVILSLEGKKSV-REGCLSVPDYTGNVLRYEEALVEGLTPE 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + A G A QHE+DHLNG+LF+D + L D+ +K Sbjct: 120 GRVVTVSASGFGALAFQHEVDHLNGMLFLDRIESLSTDLFRRK 162 >gi|291549493|emb|CBL25755.1| peptide deformylase [Ruminococcus torques L2-14] Length = 165 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 6/141 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L + +P+ K+ LI++ML+ MY G+GLAA Q+G+L ++VVID+ + Sbjct: 11 DDVLEKQCKPVTKMTLRTKILIEDMLDTMYEKMGVGLAAPQVGILKQIVVIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+I+ S + +EGCLS+P V R ++ VR ++ N + I + LL Sbjct: 66 GPIVLINPEIVETSGE-QTGEEGCLSVPGKWGIVTRPNYVKVRALNENMEEFEIEGEELL 124 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A HE+DHL G L+++ + Sbjct: 125 ARAFCHEIDHLGGHLYVEKVE 145 >gi|29840076|ref|NP_829182.1| peptide deformylase [Chlamydophila caviae GPIC] gi|33301049|sp|Q823U4|DEF_CHLCV RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|29834424|gb|AAP05060.1| polypeptide deformylase [Chlamydophila caviae GPIC] Length = 186 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 6/148 (4%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN- 71 ILRR + I +I L+ +M E M + G+GLAA Q+G L V+ ++ + Sbjct: 12 ILRRKADIIPEITDATRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVMCVEGETEEGDL 71 Query: 72 -----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 P V+INP + S+D + +EGCLSIP RADV R ITV ++ + Q + Sbjct: 72 IFCDFPKVYINPVLSNPSEDLVIGREGCLSIPGLRADVYRPQSITVTAVNLDGQEFTEHL 131 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLK 154 +G A + HE DHL+G+L+ID + K Sbjct: 132 EGFPARIIMHENDHLHGVLYIDKMEEPK 159 >gi|269127211|ref|YP_003300581.1| peptide deformylase [Thermomonospora curvata DSM 43183] gi|268312169|gb|ACY98543.1| peptide deformylase [Thermomonospora curvata DSM 43183] Length = 181 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 8/161 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+ +F DP+LR + P++ + ++ L+ ++ + M G GLAA Q+GV R+ Sbjct: 1 MAVKPIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMIDASGAGLAAPQLGVSLRVFT 60 Query: 61 IDLQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++D H NP + S+D +EGCLSIP R+ + + Sbjct: 61 YCVEDRLGHLVNP-------TLDLSEDQEEDEEGCLSIPGLTFPTPRAKRAVAKGFNMYG 113 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + LLA C+QHE DHL+GILFID + +R K Sbjct: 114 EPITLEGTDLLARCVQHETDHLDGILFIDRMDPEQRKAAMK 154 >gi|89098706|ref|ZP_01171588.1| peptide deformylase [Bacillus sp. NRRL B-14911] gi|89086668|gb|EAR65787.1| peptide deformylase [Bacillus sp. NRRL B-14911] Length = 181 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 4/149 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +V +P IL + + + ++ L+++M + M DG+GLAA QIG+ R+ V+D+ Sbjct: 24 RKIVTYPAEILEEPCETVTEFDKKLVKLLNDMYDTMIEFDGVGLAAPQIGIRKRIAVVDI 83 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D + INP+II + EGCLS P +V R + ++ D + Sbjct: 84 DDE---NGTIELINPEIIETGGE-QTGPEGCLSFPGLYGEVTRPFTVKIKAQDRKGKSFT 139 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152 + AD LA +QHE+DHL+G+LF ++R Sbjct: 140 LEADDFLARAIQHEIDHLDGVLFTSKVNR 168 >gi|295840257|ref|ZP_06827190.1| peptide deformylase [Streptomyces sp. SPB74] gi|295827867|gb|EDY45695.2| peptide deformylase [Streptomyces sp. SPB74] Length = 196 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 76/166 (45%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL + P+L +R + L++++ MY+ G+GLAA QIG RL V D Sbjct: 27 RPLSLHGAPVLTTPARESGDFGPRLEKLVEDLFATMYAARGVGLAAPQIGEGVRLFVYDC 86 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP+++ EGCLS+P A R V + + Sbjct: 87 PDDEDERHLGHLVNPRLVEVDGPLVRGPEGCLSLPGLEAATPRFDRAVVEGRTADGTRRR 146 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G A CLQHE DHL G L++D L +R + ++ + R Sbjct: 147 VEGTGFFARCLQHEYDHLEGGLYVDRLDPRRRRKVLREAGRTTWGR 192 >gi|228992595|ref|ZP_04152522.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442] gi|228998643|ref|ZP_04158230.1| Peptide deformylase [Bacillus mycoides Rock3-17] gi|229006144|ref|ZP_04163831.1| Peptide deformylase [Bacillus mycoides Rock1-4] gi|228755097|gb|EEM04455.1| Peptide deformylase [Bacillus mycoides Rock1-4] gi|228761111|gb|EEM10070.1| Peptide deformylase [Bacillus mycoides Rock3-17] gi|228767229|gb|EEM15865.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442] Length = 158 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V PD +L + + ++NL+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPDEVLETPCERVMNFDKKLVNLLKDMHETMLVADGVGLAAPQVGVSLQVAVVDIGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPVILEKRGE-QVGPEGCLSFPGLYGEVERAEYIKVRAQNRRGKIFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 AD LA +QHE+DHL+G+LF ++R Sbjct: 122 ADDFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|226305513|ref|YP_002765473.1| peptide deformylase [Rhodococcus erythropolis PR4] gi|226184630|dbj|BAH32734.1| peptide deformylase [Rhodococcus erythropolis PR4] Length = 188 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P++ + P+L +RP+ + SD+ +L+ +M + G GLAA QIGV + + Sbjct: 11 TAQPIIRWGTPVLHAPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 70 Query: 62 DLQDHAHRKNPMVFINPKI-ITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCN 118 D D + V NP + + + D + EGCLS+P D+ R F T R D Sbjct: 71 DCTDEVGTQRTGVVCNPVVDLPEAVDRQLVDDCEGCLSLPGAYTDLARPDFSTCRGNDQY 130 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I A G L C QHE DH+NGI+F D L KR + + Sbjct: 131 GNPIEITAGGTLGRCFQHETDHINGIVFGDRLPTRKRKQLYR 172 >gi|224825207|ref|ZP_03698313.1| peptide deformylase [Lutiella nitroferrum 2002] gi|224602878|gb|EEG09055.1| peptide deformylase [Lutiella nitroferrum 2002] Length = 170 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +K+P + P+LR+ + + + ++ ++ L+ +M + Y+ +G+GLAA QIGV R++V Sbjct: 1 MKRPFLPQEHPMLRQHAAAVTEFDTPALHELVQDMFDTQYAGNGVGLAAPQIGVPLRVIV 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A P V INP+I ++ EGC S+P R V R I R Sbjct: 61 FAYGGGERDPGAPAIPPTVLINPEIRPDAEHIEEDWEGCFSVPGQRGRVPRWQAIRYRAQ 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + A+G A +QHE+DHLNG LFIDHL Sbjct: 121 DIQGRLVEGRAEGFHARIIQHEVDHLNGTLFIDHLP 156 >gi|330466981|ref|YP_004404724.1| peptide deformylase [Verrucosispora maris AB-18-032] gi|328809952|gb|AEB44124.1| peptide deformylase [Verrucosispora maris AB-18-032] Length = 186 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 9/166 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ LI ++ + M + G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDVELRKLIADLTDTMRDSAGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQD-HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D+ D H NP ++ F D + EGCLSIP D KR + + + Sbjct: 61 FDVDDVVGHLVNP-------VLEFPDAEEQDGPEGCLSIPGMYFDTKRRQNVIAKGFNGY 113 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I GL+A C+QHE DHL+G+LFID L R K + + Sbjct: 114 GDPLQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKAIRQ 159 >gi|167768544|ref|ZP_02440597.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1] gi|317498700|ref|ZP_07956992.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710068|gb|EDS20647.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1] gi|291560506|emb|CBL39306.1| peptide deformylase [butyrate-producing bacterium SSC/2] gi|316894042|gb|EFV16232.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 159 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 4/156 (2%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + D +LR+ + ++++ + L+++M + MY G+GLAA Q+G+L R+VVID + Sbjct: 8 VLGDDVLRKKCKEVKEMTPRMHTLVEDMYDTMYEAMGVGLAAPQVGILKRIVVIDTGEEG 67 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + +NP +IT + V +EGCLS+P A VKR + D + + Sbjct: 68 ---ECVTLVNP-VITLKEGEQVGEEGCLSLPGKVAVVKRPDHVICEAFDEDMNPITVEGF 123 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 GL A L HE DHL+GIL+ D RD+ +++ Sbjct: 124 GLFARALCHETDHLDGILYPDVAEEPARDVTMEEVE 159 >gi|307329984|ref|ZP_07609136.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306884360|gb|EFN15394.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 212 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 6/158 (3%) Query: 13 ILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 ILRR R + + + ++ LID+M MY +G GLAA Q+ V RL V D D ++ Sbjct: 35 ILRRSCREVTEFGTPELSALIDDMFLTMYIAEGAGLAANQVDVELRLFVYDCPDDNGVRH 94 Query: 72 PMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 INP ++ D EGCLS+P R DV R+ VR +D + +I Sbjct: 95 VGHIINP-VLDQPDPAERLLIEDAEGCLSVPGARMDVPRTDRTVVRGVDKDGNPLVIEGT 153 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G A CLQHE DHL+G L+ID LS+ R ++M+ L Sbjct: 154 GYFARCLQHEADHLSGHLYIDRLSKRDRKDALRQMTDL 191 >gi|291300069|ref|YP_003511347.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] gi|290569289|gb|ADD42254.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] Length = 183 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ +F DP+LR + ++ + + L+ N+ + M G GLAA Q+GV R+ D+ Sbjct: 5 PIRLFGDPVLRTPADEVKTFDKEFRKLVRNLTDTMLDEGGAGLAAPQLGVGLRVFAFDVD 64 Query: 65 DH-AHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPD-YRADVKRSAFITVRYMDCNAQH 121 D H NP ++ F D+ EGCLSIP Y V+R I Y + Sbjct: 65 DVIGHLANP-------VLEFPDEEEQDGPEGCLSIPGLYFDTVRRQNVIAKGYNEYGDPM 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 QI+ GL+A CLQHE DHL+GILF+D L +R K++ Sbjct: 118 QIV-GTGLMARCLQHETDHLDGILFLDRLDPERRKAAMKEI 157 >gi|311068093|ref|YP_003973016.1| peptide deformylase [Bacillus atrophaeus 1942] gi|310868610|gb|ADP32085.1| peptide deformylase [Bacillus atrophaeus 1942] Length = 160 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKPIVTHPAEVLETPAEAVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + INP+I+ S EGCLS PD +V R ++ V+ + + Sbjct: 61 VDIGEESGRID---LINPEILE-SGGKQTGIEGCLSFPDLYGEVTRPDYVKVQAYNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFVFEATGFLARAVQHEMDHLDGVLFTSKVSK 148 >gi|119716828|ref|YP_923793.1| peptide deformylase [Nocardioides sp. JS614] gi|119537489|gb|ABL82106.1| peptide deformylase [Nocardioides sp. JS614] Length = 199 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 3/159 (1%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 P++ R +P+ + ++ L +M+ MY+ DG+GLAA QIGV + V D D + Sbjct: 32 PVMHRAQQPVTTYDDELRALAADMVATMYAADGVGLAACQIGVDLAMFVFDCPDDSGVHT 91 Query: 72 PMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V NP++ +EGCLS P + R +V + + DG Sbjct: 92 VGVVCNPQLTLPEGRDRQLDESEEGCLSFPGAHVECARPDQASVTGTGLDGEPVSFSGDG 151 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA CLQHE DH G +F D LS R + K + V+ Sbjct: 152 LLARCLQHETDHTRGTVFGDRLSTKLRKRLQKAHDRAVE 190 >gi|299771142|ref|YP_003733168.1| peptide deformylase [Acinetobacter sp. DR1] gi|298701230|gb|ADI91795.1| peptide deformylase [Acinetobacter sp. DR1] Length = 160 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 18/151 (11%) Query: 13 ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 IL+ ++ P+ ++NSD + L M M +G+G+AA Q+ + R++++ A R Sbjct: 14 ILKLIAAPVSANELNSDWLYQLAAAMQATMLERNGVGIAAPQVYISKRVIIV-----ASR 68 Query: 70 KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 NP +V +NP+I+ FS++ + +EGCLS+PD R V+R+ + V+Y+ Sbjct: 69 PNPRYPDAPEMDAVVMVNPEILEFSNETLLGEEGCLSVPDERGQVERAEMVKVKYLTLQG 128 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + G A +QHE+DHLNG+LF++ + Sbjct: 129 EAVETVFHGFPARIVQHEVDHLNGVLFVERI 159 >gi|284031594|ref|YP_003381525.1| peptide deformylase [Kribbella flavida DSM 17836] gi|283810887|gb|ADB32726.1| peptide deformylase [Kribbella flavida DSM 17836] Length = 201 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 3/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + ++ RV++P+ D+ L+ +M+ M + +G+GLAA Q+GV +L V D Sbjct: 12 PITRWGEDVMHRVNQPVTDFGDDLHKLVADMVATMNAAEGVGLAANQVGVDLQLFVFDCP 71 Query: 65 DHAHRKNPMVFINPKI-ITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ V NPK+ + D +EGCLS+P R + V +D + Sbjct: 72 DRDGVRHQGVVCNPKLELPEGKDRHLDEGEEGCLSLPGAFTKCARPDYAKVTGVDEHGNP 131 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +GLLA CLQHE DH G++F D LSR + + + +L Sbjct: 132 VSYEGNGLLARCLQHETDHTQGMVFGDRLSRKYKKRLFAEAEELA 176 >gi|325955362|ref|YP_004239022.1| peptide deformylase [Weeksella virosa DSM 16922] gi|323437980|gb|ADX68444.1| Peptide deformylase [Weeksella virosa DSM 16922] Length = 223 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 ILR S ++ +S + L D ML + T G+G+AA QIG+ V I Q + Sbjct: 61 ILRTKSIDLDPTDSSVKKLADRMLATVLDEETRGVGIAAPQIGINRNAVWI--QRFDQKD 118 Query: 71 NPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 P FINPKI +S +EGCLSIPD +V RS I + + D + Q +G Sbjct: 119 QPFQFFINPKITWYSSLLQKGREGCLSIPDTIGNVVRSYAIRIEFYDLDGQFHDEVIEGF 178 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A QHE+DHLNG+LF D L ++ TK Sbjct: 179 TAVIAQHEVDHLNGVLFTDRLQEQEKTTYTK 209 >gi|254414456|ref|ZP_05028222.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] gi|196178686|gb|EDX73684.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] Length = 177 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 7/156 (4%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 +PILR++++PI+ + + I LI+ + + +G+G+AA QI RL ++ + + Sbjct: 12 NPILRQLAQPIDNVQDESIQKLIEALKAKAVAANGVGIAAPQISQSCRLFIVASRPNPRY 71 Query: 70 KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 N P INP+I+ SD EGCLSIP R V R I V Y + + Q Sbjct: 72 PNAPTMEPTAMINPQIVAHSDQVVKGWEGCLSIPGIRGLVPRYQAIEVEYTNQEGKPQRQ 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 +A +QHE DHLNGI+F+D + +D+IT+ Sbjct: 132 QLTDFVARIVQHEYDHLNGIVFVDRVES-SQDLITE 166 >gi|86604999|ref|YP_473762.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] gi|86553541|gb|ABC98499.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] Length = 175 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 6/144 (4%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 DPIL +V+ P+ + + + NLI+ ML + G+GLAA Q+G +++++ + + Sbjct: 10 DPILTQVAEPVAEFGTPALQNLIEEMLATLKEAQGVGLAAPQVGFPLQVIIVASRPNPRY 69 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A + P+V +NP+ + S++ + EGCLS+P+ R V RS + V Y Q + Sbjct: 70 PDAPQMEPLVMVNPRPLACSEEQVLGWEGCLSVPNCRGLVARSREVEVEYHTPEGSRQRV 129 Query: 125 YADGLLATCLQHELDHLNGILFID 148 A QHE DHL G LF+D Sbjct: 130 VWRDFPARIFQHEYDHLRGRLFLD 153 >gi|21223589|ref|NP_629368.1| polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|256785300|ref|ZP_05523731.1| polypeptide deformylase [Streptomyces lividans TK24] gi|289769194|ref|ZP_06528572.1| polypeptide deformylase [Streptomyces lividans TK24] gi|23396574|sp|Q9K4A0|DEF4_STRCO RecName: Full=Peptide deformylase 4; Short=PDF 4; AltName: Full=Polypeptide deformylase 4 gi|8546887|emb|CAB94606.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|289699393|gb|EFD66822.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 216 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECEDVTDFGEEFQQLVADMFASQRTAEGVGLAANQIGVSKKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP+++ D EGCLS+P A + R + V D Sbjct: 100 DCPDDEGVRHVGVVCNPRLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|218904997|ref|YP_002452831.1| peptide deformylase [Bacillus cereus AH820] gi|218538969|gb|ACK91367.1| peptide deformylase [Bacillus cereus AH820] Length = 156 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV R+ V+D+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLRVAVVDIGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF ++R Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|29654308|ref|NP_820000.1| peptide deformylase [Coxiella burnetii RSA 493] gi|154707431|ref|YP_001424426.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|161830427|ref|YP_001596722.1| peptide deformylase [Coxiella burnetii RSA 331] gi|39931093|sp|Q83CV9|DEF1_COXBU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|29541575|gb|AAO90514.1| peptide deformylase [Coxiella burnetii RSA 493] gi|154356717|gb|ABS78179.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|161762294|gb|ABX77936.1| peptide deformylase [Coxiella burnetii RSA 331] Length = 170 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 7/161 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVIDLQD 65 +PDP L+ ++ +EK + + +ID M E Y+ + + + VID Sbjct: 7 YPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVIDFS- 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD-VKRSAFITVRYMDCNAQHQII 124 ++ P+ +N +II S + + +EGC+S+ + V R+A I VR D + Sbjct: 66 -PNKDQPLCLVNAEIIERSGEHT-EEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKPVEF 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADG +A C+QHELDHLNGI+F+D LS LKR I K++ KL Sbjct: 124 EADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKL 164 >gi|302554040|ref|ZP_07306382.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302471658|gb|EFL34751.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 216 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTDFGDEFQQLVADMFASQRTAEGVGLAANQIGVDAKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NPK++ + EGCLS+P A + R + V D Sbjct: 100 DCPDDEGVRHTGVVCNPKLVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|212212575|ref|YP_002303511.1| peptide deformylase [Coxiella burnetii CbuG_Q212] gi|212010985|gb|ACJ18366.1| peptide deformylase [Coxiella burnetii CbuG_Q212] Length = 170 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 7/161 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVIDLQD 65 +PDP L+ ++ +EK + + +ID M E Y+ + + + VID Sbjct: 7 YPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVIDFS- 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD-VKRSAFITVRYMDCNAQHQII 124 ++ P+ +N +II S + + +EGC+S+ + V R+A I VR D + Sbjct: 66 -PNKDQPLCLVNAEIIERSGEHT-EEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKPVEF 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADG +A C+QHELDHLNGI+F+D LS LKR I K++ KL Sbjct: 124 EADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKL 164 >gi|218680973|ref|ZP_03528870.1| peptide deformylase [Rhizobium etli CIAT 894] Length = 164 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 3/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P++ +P P L+ V P+ + L D++L M + G+G+ A IGVL R+ V++L Sbjct: 4 RPILHYPHPALKTVCAPVSDFGPSLAELADDLLATMRAAPGVGITAAHIGVLSRVTVLEL 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D A +++NP+I FS + + EG +S+P +V R I RY D Sbjct: 64 -DKAFGVR--LYVNPEITWFSKETMNHAEGSVSMPGATDEVIRPRAIRFRYQDGAGTVHE 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+G A C+QHE+D L+GI ++ LSRL+RD + KK K Sbjct: 121 EAAEGFHAICIQHEVDQLDGIFWLQRLSRLRRDRLVKKWEK 161 >gi|225018698|ref|ZP_03707890.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum DSM 5476] gi|224948426|gb|EEG29635.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum DSM 5476] Length = 152 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ D ILR+ R + N + +L+D++ E M+ DG+GLAA Q+GVL R VV Sbjct: 1 MAIRTIVVDDDSILRKKCREVIDYNKRLHDLLDDLAETMHKADGVGLAAPQVGVLRRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +NP+II S + EGCLS P+ V+R +TV+ D + + Sbjct: 61 IDVGEGV-----IELVNPEIIKKSGSQN-GAEGCLSYPNEFGMVERPMQVTVKAFDRDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + LLA + HE+DHL+GI+F D + + D Sbjct: 115 EFKLIGKELLARAICHEVDHLDGIVFKDLATEMIED 150 >gi|302561940|ref|ZP_07314282.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000] gi|302479558|gb|EFL42651.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000] Length = 184 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL + DP+L R + ++ L+D++ MY G+GLAA Q+G R+ V D Sbjct: 17 RPLTLLGDPVLHAPCREVTDFGPELARLVDDLFATMYEARGVGLAANQVGEPLRVFVYDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP+ + EGCLS+P A +R V + Sbjct: 77 PDDEDVRHLGHVVNPRPVVTDGVVVRGPEGCLSLPGLEAGTERYDHAVVEGFTVTGEPVT 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ G A CLQHE DHL+G ++ D L+ + + ++ + Sbjct: 137 VHGTGFFARCLQHECDHLDGRIYADRLTGWRHRRLMRQADR 177 >gi|50084241|ref|YP_045751.1| peptide deformylase 2 [Acinetobacter sp. ADP1] gi|49530217|emb|CAG67929.1| peptide deformylase 2 [Acinetobacter sp. ADP1] Length = 160 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 8/148 (5%) Query: 11 DPILRRVSRPIEKINSD---IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 + IL+ + P+ + D + L+ M M +G+G+AA QI V R++++ + + Sbjct: 12 EEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIVASRPNP 71 Query: 67 ----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A P+V INP+I FS + + +EGCLS+PD R V+R+ I VRY Q Sbjct: 72 RYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRYFSLQGQLI 131 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150 G A +QHE+DHLNG+LF+D L Sbjct: 132 EQRFHGFPARIVQHEIDHLNGVLFVDRL 159 >gi|38234602|ref|NP_940369.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129] gi|38200866|emb|CAE50571.1| peptide deformylase [Corynebacterium diphtheriae] Length = 187 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 8/159 (5%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+VI DP+L + P+ +++ +LI +M E M + G+GLAA Q+GV RL V + Sbjct: 3 RPIVICGDPVLHNPTAPVSD-PAEVQDLIADMYETMEAARGVGLAANQVGVGLRLFVFNC 61 Query: 64 QD---HAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D H HR NP++ + T D EGCLS+P R+ + V ++ Sbjct: 62 PDDEGHFHRGCVINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWARVTGLEA 121 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 + + G LA C QHE+ HL+G L+ D L R KR Sbjct: 122 DGTPVVYEGTGFLARCFQHEVGHLDGFLYTDTLIGRWKR 160 >gi|326329763|ref|ZP_08196084.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] gi|325952528|gb|EGD44547.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] Length = 181 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR+ + + + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAVQPIRLFGDPVLRKPAIEVVDFDKELHKLVADLTDTMLEAPGAGLAAPQIGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP + T S++ EGCLS+PD D +R+ + + D + + Sbjct: 61 WYVDGQVGH-----LVNPDL-TLSEETQDGGEGCLSLPDITFDCRRALSVVAKGFDMHGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I LLA +QHE DHL+GILFID L R K++ + Sbjct: 115 PVTIEGSELLARAIQHETDHLDGILFIDRLDEAARKAAMKEIRE 158 >gi|302517742|ref|ZP_07270084.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|318080637|ref|ZP_07987969.1| polypeptide deformylase [Streptomyces sp. SA3_actF] gi|302426637|gb|EFK98452.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 183 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 77/166 (46%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL ++ P+L +R + L++++ MY+ G+GLAA QIG R+ V D Sbjct: 14 RPLSLYGAPVLTTPARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D R++ +NP+++ EGCLS+P A R V + + Sbjct: 74 PDDEDRRHLGHLVNPRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARRR 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G A CLQHE DHL G L++D L + + ++ + R Sbjct: 134 VEGTGFFARCLQHEYDHLEGGLYVDRLDARRHRKVLREAGRTGWGR 179 >gi|149201579|ref|ZP_01878553.1| peptide deformylase [Roseovarius sp. TM1035] gi|149144627|gb|EDM32656.1| peptide deformylase [Roseovarius sp. TM1035] Length = 149 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 81/146 (55%), Gaps = 2/146 (1%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79 P+ +I L + M+ VM + G+GLAA Q+G + L V+D R + NP+ Sbjct: 5 PLPEITDQTRALWNEMIAVMEAMPGVGLAATQLGEMQALAVVDAS--TARGQAVRMANPE 62 Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 I+ S ++E +P A ++R +TVR+++ +A+ + GL AT +QH++D Sbjct: 63 ILHASVQLRPHEEASPCLPGVSAMIERPRAVTVRFLNADAEVEERDFVGLWATSVQHQID 122 Query: 140 HLNGILFIDHLSRLKRDMITKKMSKL 165 HL G ++ D L R+KRDM+ ++ K+ Sbjct: 123 HLQGRMYFDRLGRVKRDMLLRRARKI 148 >gi|119509174|ref|ZP_01628325.1| polypeptide deformylase [Nodularia spumigena CCY9414] gi|119466340|gb|EAW47226.1| polypeptide deformylase [Nodularia spumigena CCY9414] Length = 177 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 7/162 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++ DP+LR+ + +E I LID++ + +G+G+AA Q+ YRL ++ Sbjct: 6 PIIQLGDPVLRQKAAWVENTQDKYIQKLIDDLTVTVAQANGVGIAAPQVAASYRLFIVAS 65 Query: 64 QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + N P INP+II S + EGCLS+P R V R +T+ Y D N Sbjct: 66 RPNLRYPNAPVMEPTAMINPRIIDHSTEIVKGWEGCLSVPGIRGLVPRYKHLTIAYTDRN 125 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + +A QHE DHL+G++F+D + DMIT+ Sbjct: 126 GKFKKQELTDFVARIFQHEYDHLDGVVFVDRVEN-SLDMITE 166 >gi|157692252|ref|YP_001486714.1| peptide deformylase [Bacillus pumilus SAFR-032] gi|157681010|gb|ABV62154.1| formylmethionine deformylase [Bacillus pumilus SAFR-032] Length = 160 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+VI P +L + + ++ + + L+D+M + M DG+GLAA QIG+ R+ V Sbjct: 1 MAVKPIVIHPAEVLEQKAESVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + +NP+++ + EGCLS P V+R +++ V+ D + Sbjct: 61 VDIGEESGRID---LVNPEVLEVKGSQTDI-EGCLSFPSLYGTVERPSYVKVKAFDKKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 I A+G LA L HE+DHL+GILF S++ + K+++++ Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFT---SKIIQTYTEKELAEM 158 >gi|332670777|ref|YP_004453785.1| peptide deformylase [Cellulomonas fimi ATCC 484] gi|332339815|gb|AEE46398.1| peptide deformylase [Cellulomonas fimi ATCC 484] Length = 166 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR PI I+ + +L+D++LE + GLAA QIGV R Sbjct: 5 MAMREIRTVGDPVLRTPCDPITTIDDRVRSLVDDLLETVDHEGRAGLAANQIGVGLRAFS 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ D +NP I+ S+D + EGCLS+P +R+ + V D + Sbjct: 65 WNIDDEIG-----YVLNPVIVELSEDEYQDGDEGCLSVPGLWYPTRRAWYARVAGTDLDG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + ++ L+A CLQHE+DHL+G+L++D L R R Sbjct: 120 KEVVVEGTELMARCLQHEVDHLDGMLYLDRLERSVR 155 >gi|172038579|ref|YP_001805080.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142] gi|171700033|gb|ACB53014.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142] Length = 171 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 9/161 (5%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 +PILR+ ++ + I D + ID +L + G+G+AA Q+ YRL ++ + Sbjct: 13 NPILRQQAQCVTDITDDKLQEFIDTLLTIAMDAKGVGIAAPQVSQSYRLFMVCSHPNPRY 72 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQI 123 A P V INP++++ S + EGCLS+P R V R ITV Y+D Q HQ Sbjct: 73 PDAPLMEPTVMINPRLVSHSKEMVKGWEGCLSVPRIRGLVPRYQTITVEYLDRYGQLHQQ 132 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + QHELDHLNGILFID + + D+I +K + Sbjct: 133 ELTD-FIGRIFQHELDHLNGILFIDRIDN-QGDLIYEKTGQ 171 >gi|17433049|sp|Q9FUZ0|DEF1A_SOLLC RecName: Full=Peptide deformylase 1A, chloroplastic; Short=PDF 1A; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|11320968|gb|AAG33981.1|AF271258_1 peptide deformylase-like protein [Solanum lycopersicum] Length = 277 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 17/158 (10%) Query: 11 DPILRRVSR--PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 DP+L S+ P+E+I S+ I +I+ M++VM + G+GLAA QIG+ +++V++ + Sbjct: 96 DPVLHEPSQDIPLEEIGSERIQKIIEEMVKVMRNAPGVGLAAPQIGIPLKIIVLEDTNEY 155 Query: 67 ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A + P +V INPK+ + +++ EGCLS+ +RA V+R + V Sbjct: 156 ISYAPKDETKAQDRRPFGLLVIINPKLKKKGNKTALFFEGCLSVDGFRAVVERHLEVEVT 215 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +D N + + A G A LQHE DHL+G L++D ++ Sbjct: 216 GLDRNGKAIKVDASGWQARILQHEYDHLDGTLYVDKMA 253 >gi|149182344|ref|ZP_01860822.1| peptide deformylase [Bacillus sp. SG-1] gi|148849963|gb|EDL64135.1| peptide deformylase [Bacillus sp. SG-1] Length = 161 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V +P+ IL R + + + + +D+M + M + DG+GLAA Q+G + ++D+ Sbjct: 5 PIVTYPNEILEIECRKVTEFDKKLRKFLDDMYDTMIAADGVGLAAPQVGKDIAVAIVDIG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D + +NP+++ + + EGCLS P+ +V R ++ V + D + ++ Sbjct: 65 DET---GTIEMVNPEVLEVRGE-QIDLEGCLSFPNLYGEVSRPEYVKVTFQDRKGRKLLV 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA + HE+DHL+G+LF + R Sbjct: 121 EAEGFLARAILHEIDHLHGVLFTSKVIR 148 >gi|319442115|ref|ZP_07991271.1| peptide deformylase [Corynebacterium variabile DSM 44702] Length = 166 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 8/150 (5%) Query: 8 IFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-D 65 +F DP+LR V+ I+ + + L+++M E M + G+GLAA Q+GV R+ V D D Sbjct: 8 LFGDPVLRTVAENIDDPTDPTLRTLVEDMYETMDAAGGVGLAANQVGVTRRVFVYDCDGD 67 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H +NP + +EGCLS+PD DV R+A + + + + + Sbjct: 68 RGH------IVNPVWEAVGAETQTGREGCLSVPDAGGDVTRAATVHLTGVTVDGEEVDRE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 GL+A C+QHE DHL+G+++ + R Sbjct: 122 VTGLMARCVQHETDHLDGVMYFQRMESGTR 151 >gi|30263870|ref|NP_846247.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47529297|ref|YP_020646.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186717|ref|YP_029969.1| peptide deformylase [Bacillus anthracis str. Sterne] gi|65321194|ref|ZP_00394153.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis str. A2012] gi|165872270|ref|ZP_02216907.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167636413|ref|ZP_02394712.1| peptide deformylase [Bacillus anthracis str. A0442] gi|167641126|ref|ZP_02399381.1| peptide deformylase [Bacillus anthracis str. A0193] gi|170688865|ref|ZP_02880068.1| peptide deformylase [Bacillus anthracis str. A0465] gi|170708808|ref|ZP_02899244.1| peptide deformylase [Bacillus anthracis str. A0389] gi|177654890|ref|ZP_02936607.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190565855|ref|ZP_03018774.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|227813225|ref|YP_002813234.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|229601957|ref|YP_002868104.1| peptide deformylase [Bacillus anthracis str. A0248] gi|254683424|ref|ZP_05147284.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066] gi|254735906|ref|ZP_05193612.1| peptide deformylase [Bacillus anthracis str. Western North America USA6153] gi|254739846|ref|ZP_05197539.1| peptide deformylase [Bacillus anthracis str. Kruger B] gi|254751036|ref|ZP_05203075.1| peptide deformylase [Bacillus anthracis str. Vollum] gi|254756701|ref|ZP_05208730.1| peptide deformylase [Bacillus anthracis str. Australia 94] gi|39931068|sp|Q81WH1|DEF1_BACAN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|30258514|gb|AAP27733.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47504445|gb|AAT33121.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180644|gb|AAT56020.1| polypeptide deformylase [Bacillus anthracis str. Sterne] gi|164711946|gb|EDR17486.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167510906|gb|EDR86297.1| peptide deformylase [Bacillus anthracis str. A0193] gi|167528155|gb|EDR90942.1| peptide deformylase [Bacillus anthracis str. A0442] gi|170126293|gb|EDS95184.1| peptide deformylase [Bacillus anthracis str. A0389] gi|170667220|gb|EDT17980.1| peptide deformylase [Bacillus anthracis str. A0465] gi|172080401|gb|EDT65488.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190562774|gb|EDV16740.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|227002722|gb|ACP12465.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|229266365|gb|ACQ48002.1| peptide deformylase [Bacillus anthracis str. A0248] Length = 156 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 84/147 (57%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+GLLA +QHE+DHL+G+LF ++R Sbjct: 122 AEGLLARAIQHEIDHLHGVLFTSKVTR 148 >gi|68535326|ref|YP_250031.1| peptide deformylase [Corynebacterium jeikeium K411] gi|260578459|ref|ZP_05846373.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] gi|68262925|emb|CAI36413.1| polypeptide deformylase [Corynebacterium jeikeium K411] gi|258603481|gb|EEW16744.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] Length = 193 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 10/164 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P+VI DP+L + ++ D+ LI +M E + + +G+GLAA Q+GV R Sbjct: 1 MTIMPIVICGDPVLHNPTTKVDPSEIPDLAPLIADMYETLSAANGVGLAANQVGVNKRFF 60 Query: 60 VIDLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 V D D + NP++ + T D+ +EGCLS+P Y R+ + V Sbjct: 61 VYDCPDTERGEMRRGCVINPVLETSEIPETMPDE-EEDEEGCLSVPGYSFPTGRADWARV 119 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 +D N + + G A CLQHE+ HL+G L+ID L R KR Sbjct: 120 TGLDENGEEVTVEGTGFFARCLQHEVGHLDGFLYIDTLIGRWKR 163 >gi|257056762|ref|YP_003134594.1| peptide deformylase [Saccharomonospora viridis DSM 43017] gi|256586634|gb|ACU97767.1| peptide deformylase [Saccharomonospora viridis DSM 43017] Length = 166 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV + L F DP+L+ + P+ + I L+D++L+ + GLAA QIGV R Sbjct: 1 MVMRDLRYFGDPVLKSPADPVTTFDDSIRALVDDLLDTVNLPGRAGLAAPQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP+++ S++ EGCLS+P R+ TV+ +D + Sbjct: 61 YNVDGSIG-----YVLNPELVELSEEKHEVMEGCLSLPGLSFTTVRAQRATVKGVDLRNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + GLLA CLQHE+DHL+G+L+ID L +R Sbjct: 116 PVTVSGSGLLAQCLQHEVDHLDGLLYIDRLEPQQR 150 >gi|303239362|ref|ZP_07325890.1| peptide deformylase [Acetivibrio cellulolyticus CD2] gi|302593148|gb|EFL62868.1| peptide deformylase [Acetivibrio cellulolyticus CD2] Length = 155 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 6/136 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L +V R ++ I++ I+ L+ +M + MY+ +G+GLAA Q+GVL RLVVID+ + Sbjct: 11 DDVLGKVCRQVDVIDNRILILLKDMADTMYAENGVGLAAPQVGVLKRLVVIDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INPKI+ + + EGCLS+P+ +V R + V ++ + + + LL Sbjct: 66 GLIELINPKIVKEEGEV-LDIEGCLSVPELVGEVVRPKKVWVEALNTKGEKICLEGEDLL 124 Query: 131 ATCLQHELDHLNGILF 146 A HE+DHL+GILF Sbjct: 125 ARAFCHEIDHLDGILF 140 >gi|297162299|gb|ADI12011.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 185 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 2/146 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ + DP+L + ++ + L+++M MY+ G+GLAA Q+GV R+ V D Sbjct: 14 RPMRLLGDPVLATSCEEVTAFDAALGRLVEDMYATMYAAQGVGLAANQVGVALRVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D R++ +NP+++ +D +V EGCLS+P A R V + + Sbjct: 74 PDDEDRRHLGHVVNPRLVE-ADGVTVRGPEGCLSLPGIEAGTVRHDHAVVEGVTATGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 + G A CLQHE DHL+G LF D Sbjct: 133 RVEGTGFFARCLQHECDHLDGRLFTD 158 >gi|209523408|ref|ZP_03271963.1| peptide deformylase [Arthrospira maxima CS-328] gi|209496150|gb|EDZ96450.1| peptide deformylase [Arthrospira maxima CS-328] Length = 177 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 6/147 (4%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 DP+LR ++P+ I + I +LID+++ + +G+G+AA Q+G R++VI + Sbjct: 12 DPVLRDHAQPVANIWEARIQSLIDDLMATVIEKNGVGIAAPQVGYSDRILVIASRPSIRY 71 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P INPKII S++ EGCLS+P R V R I V Y + Q Sbjct: 72 PAAPEMEPTAMINPKIIGKSEEMVADWEGCLSVPGIRGIVNRYQAIEVEYTSRDGHLQHR 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 G +A QHE DHL GI+F+D ++ Sbjct: 132 ELTGFVARIFQHEYDHLEGIIFLDRVA 158 >gi|256392284|ref|YP_003113848.1| peptide deformylase [Catenulispora acidiphila DSM 44928] gi|256358510|gb|ACU72007.1| peptide deformylase [Catenulispora acidiphila DSM 44928] Length = 188 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 12/164 (7%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 +F DP+L + P+ + ++ L+ ++ E M G GLAA QIGV R+ ++ + Sbjct: 14 LFGDPVLTTPATPVVDFDKELRTLVKDLTETMLDAPGSGLAAPQIGVGLRVFTWNVDNEL 73 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 H NP + SD+ EGCLSIPD KR+ + + + + + Sbjct: 74 GHLVNP-------TLDLSDEEQDGDEGCLSIPDLAFPCKRALRVVAKGWTMHGEPVEVEG 126 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +LA C+QHE DHL+G+LFID L R R KK + ++L D Sbjct: 127 SEMLARCIQHETDHLDGVLFIDRLDREWR----KKAMRAIRLAD 166 >gi|220906351|ref|YP_002481662.1| peptide deformylase [Cyanothece sp. PCC 7425] gi|219862962|gb|ACL43301.1| peptide deformylase [Cyanothece sp. PCC 7425] Length = 190 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 11 DPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD---- 65 +P+LR+ ++ + ++ I LID++L + +G+GLAA Q+G +++ ++ + Sbjct: 23 NPVLRQTAQFVPEVGHPQIQTLIDDLLVTVKQANGVGLAAPQVGASWQIFIVASRPNPRY 82 Query: 66 -HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 HA P INP+++ +D EGCLSIP R V R I V Y+D + + Sbjct: 83 PHAPEMEPTAMINPRLLAHNDQQVKDWEGCLSIPGLRGLVPRYQGIEVEYLDRRGKTRRQ 142 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +A QHE DHLNG++F+D L + ++ KLV Sbjct: 143 QLHDFVARIFQHEQDHLNGVVFLDRLETTLELVTEQEYQKLV 184 >gi|321315338|ref|YP_004207625.1| peptide deformylase [Bacillus subtilis BSn5] gi|320021612|gb|ADV96598.1| peptide deformylase [Bacillus subtilis BSn5] Length = 160 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + +NP+I+ S + + EGCLS P DV R+ ++ VR + + Sbjct: 61 VDIGDDRGRID---LVNPEILEKSGEQTGI-EGCLSFPGVYGDVTRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|297195782|ref|ZP_06913180.1| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486] gi|297152947|gb|EDY66111.2| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486] Length = 190 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 2/149 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ + DP+L + + D+ L++++ MY+ G+GLAA Q+GV R+ V D Sbjct: 14 RPMSLLADPVLHKPCETVTDFGPDLGRLVEDLFATMYAAQGVGLAANQVGVGSRVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ +D +V EGCLS+P A +R V + + Sbjct: 74 PDDEDVRHLGHVVNPRLVE-ADGVTVRGPEGCLSLPGLEAGTERFDRAVVEGVTWEGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + G A CLQHE DHL G+++ D L+ Sbjct: 133 RVEGTGFFARCLQHECDHLEGLVYADRLT 161 >gi|152976233|ref|YP_001375750.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024985|gb|ABS22755.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98] Length = 158 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 84/147 (57%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M + DG+GLAA Q+GV ++ VID+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVILLKDMYETMVAADGVGLAAPQVGVSLQVAVIDIGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPVILEKRGE-QVGPEGCLSFPGLYGEVERAEYIKVRAQNRRGKIFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF ++R Sbjct: 122 ANGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|237747725|ref|ZP_04578205.1| peptide deformylase [Oxalobacter formigenes OXCC13] gi|229379087|gb|EEO29178.1| peptide deformylase [Oxalobacter formigenes OXCC13] Length = 178 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ D L R S P+++ N+ +N LI++M E MY+ DG GLAA QIG+ R+V Sbjct: 1 MAVRKILKMGDSRLLRESEPVKQFNTPELNQLIEDMYETMYAADGAGLAAPQIGINQRVV 60 Query: 60 VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + ++ + V INP I SD+ EGCLSIP R V R A I Sbjct: 61 IFGYDENNRYPDAPPVPKTVLINPVIRPLSDEIDAGWEGCLSIPGMRGIVPRWAKIHYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 D ADG A +QHE DHL+GIL+ Sbjct: 121 FDQFGNKISRNADGFHARVVQHECDHLDGILY 152 >gi|328907667|gb|EGG27431.1| polypeptide deformylase [Propionibacterium sp. P08] Length = 200 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 5/164 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + +P+L +RPI + + D+ LI +M M + DG+GLAA Q+GV L V D + Sbjct: 27 WGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVYACPDADN 86 Query: 69 RKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + F NP ++T + EGCLS P + R T D + Sbjct: 87 VVHHGAFCNP-VVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPWGNDITV 145 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 G A CLQHE DH NG++F D LS+ R + ++ + L Sbjct: 146 TGTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQHDAVAHL 189 >gi|262368804|ref|ZP_06062133.1| peptide deformylase [Acinetobacter johnsonii SH046] gi|262316482|gb|EEY97520.1| peptide deformylase [Acinetobacter johnsonii SH046] Length = 161 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 6/135 (4%) Query: 23 KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKNPMVFI 76 + NSD +M L M+ M G+G+AA Q+ + R++++ + + A + +V + Sbjct: 26 EFNSDWLMQLASAMIATMLERSGVGIAAPQVYISKRVIIVASRPNLRYPDAPEMDAVVMV 85 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP+I+ FS ++ +EGCLS+P+ R V+R+ I V Y + +G A +QH Sbjct: 86 NPEILEFSQATTLGEEGCLSVPNERGQVQRAQSIKVLYHTLTGEVMESTFEGFPARIVQH 145 Query: 137 ELDHLNGILFIDHLS 151 E+DHLNGILF+D LS Sbjct: 146 EIDHLNGILFVDRLS 160 >gi|313836783|gb|EFS74497.1| peptide deformylase [Propionibacterium acnes HL037PA2] gi|314929809|gb|EFS93640.1| peptide deformylase [Propionibacterium acnes HL044PA1] gi|314972238|gb|EFT16335.1| peptide deformylase [Propionibacterium acnes HL037PA3] Length = 209 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 3/163 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + +P+L +RPI + + D+ LI +M M + DG+GLAA Q+GV L V D + Sbjct: 36 WGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVYACPDADN 95 Query: 69 RKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + F NP + EGCLS P + R T D + Sbjct: 96 VVHHGAFCNPVVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPWGNDITVT 155 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 G A CLQHE DH NG++F D LS+ R + ++ + L Sbjct: 156 GTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQHDAVAHL 198 >gi|300859237|ref|YP_003784220.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] gi|300686691|gb|ADK29613.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] gi|302206928|gb|ADL11270.1| Peptide deformylase [Corynebacterium pseudotuberculosis C231] gi|302331492|gb|ADL21686.1| N-formylmethionyl-tRNA deformylase [Corynebacterium pseudotuberculosis 1002] gi|308277182|gb|ADO27081.1| N-formylmethionyl-tRNA deformylase [Corynebacterium pseudotuberculosis I19] Length = 197 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 81/166 (48%), Gaps = 13/166 (7%) Query: 1 MVKKPLVIFPDPILR----RVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M +P+VI DP+L V+ PI+ + ++ LI +M E M G+GLAA QIGV Sbjct: 1 MTVRPIVIHGDPVLHNPTAEVTEPID--SPELQELIADMYETMAVAHGVGLAANQIGVGK 58 Query: 57 RLVVI---DLQDHAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 RL V D Q H HR NP++ T D EGCLS+P R+ + Sbjct: 59 RLFVFNCPDDQGHMHRGCVINPILETTEIPQTMPSDDGSDDEGCLSVPGEGFPTGRATWA 118 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 V +D + G LA C QHE+ HL+G L+ D L R KR Sbjct: 119 KVTGLDEHGNPVSYEGTGFLARCFQHEVGHLDGFLYTDTLVGRYKR 164 >gi|118479089|ref|YP_896240.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam] gi|118418314|gb|ABK86733.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam] Length = 156 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPNEVLETPCERVMNFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF ++R Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|255553123|ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus communis] gi|223543236|gb|EEF44768.1| polypeptide deformylase, putative [Ricinus communis] Length = 266 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+L +R ++ +I S+ I +ID+M++VM G+GLAA QIGV R++V++ Sbjct: 85 DPVLHEPAREVDPDEIGSERIQKIIDDMVKVMRRAPGVGLAAPQIGVPLRIIVLEDTTEY 144 Query: 63 ------LQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P +V +NPK+ + +++ EGCLS+ +RA V+RS + V Sbjct: 145 IGYAPKEETKAQDRRPFDLLVILNPKLKKKGNRTALFFEGCLSVDGFRAVVERSLEVEVS 204 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D + Q + A G A LQHE DHL+G L++D + Sbjct: 205 GLDRSGQPIKVDASGWQARILQHECDHLDGTLYVDKM 241 >gi|312129572|ref|YP_003996912.1| peptide deformylase [Leadbetterella byssophila DSM 17132] gi|311906118|gb|ADQ16559.1| peptide deformylase [Leadbetterella byssophila DSM 17132] Length = 193 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 15/164 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++ + IL++ IEK ++ LI +M E M + +G GLA+ QIG+ RL ++ Sbjct: 1 MKRPILAYGHSILKQKCNDIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60 Query: 62 DL---------QDHA--HRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 D QD KN +FIN KII S + EGCLSIP+ VKR Sbjct: 61 DSKTTFENLDEQDQGIYFEKNDSGIKEIFINAKIIERSAELWEDDEGCLSIPELSQKVKR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 IT+ Y + + + Q G A +QHE DH GIL++D+L Sbjct: 121 PWTITIAYYNKDFELQRKTFSGTTARMIQHEYDHTEGILYLDYL 164 >gi|126660127|ref|ZP_01731246.1| polypeptide deformylase [Cyanothece sp. CCY0110] gi|126618570|gb|EAZ89320.1| polypeptide deformylase [Cyanothece sp. CCY0110] Length = 169 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 8/148 (5%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 +PILR+ ++ + I + + LID +L G+G+AA Q+ YRL ++ + Sbjct: 13 NPILRQQAQYVTDITDEKLQQLIDTLLTTAIDAKGVGIAAPQVSQSYRLFIVCSHPNSRY 72 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQI 123 A P V INP +++ S++ EGCLS+P R V R ITV Y+D + HQ Sbjct: 73 PDAPSMEPTVMINPCLVSHSEEMVKGWEGCLSVPGVRGLVSRYQKITVEYLDRYGKLHQQ 132 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + D +A QHELDHLNGILFID ++ Sbjct: 133 EFTD-FVARIFQHELDHLNGILFIDRVN 159 >gi|284052203|ref|ZP_06382413.1| peptide deformylase [Arthrospira platensis str. Paraca] gi|291566279|dbj|BAI88551.1| peptide deformylase [Arthrospira platensis NIES-39] Length = 177 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 6/147 (4%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 DP+LR ++P+ I I +LID+++ + +G+G+AA Q+G R++VI + Sbjct: 12 DPVLRDHAQPVANIWEPRIQSLIDDLMATVIEKNGVGIAAPQVGYSDRILVIASRPSIRY 71 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P INPKII SD+ EGCLS+P R V R I V Y + + Sbjct: 72 PAAPEMEPTAMINPKIIGKSDEMVADWEGCLSVPGIRGIVNRYQAIEVEYTSRDGHLEHR 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 G +A QHE DHL GI+F+D ++ Sbjct: 132 ELTGFVARIFQHEYDHLEGIIFLDRVA 158 >gi|16078635|ref|NP_389454.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221309447|ref|ZP_03591294.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221313772|ref|ZP_03595577.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318696|ref|ZP_03599990.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322967|ref|ZP_03604261.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY] gi|2499922|sp|P94462|DEF1_BACSU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|1772499|emb|CAA71349.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|2337801|emb|CAA74262.1| putative Def protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633944|emb|CAB13445.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str. 168] Length = 160 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ D R + +NP+I+ S + + EGCLS P+ DV R+ ++ VR + + Sbjct: 61 VEIGDDRGRID---LVNPEILEKSGEQTGI-EGCLSFPNVYGDVTRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|332295842|ref|YP_004437765.1| Peptide deformylase [Thermodesulfobium narugense DSM 14796] gi|332178945|gb|AEE14634.1| Peptide deformylase [Thermodesulfobium narugense DSM 14796] Length = 165 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 8/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K+ ++ P+ +LR+ S P+ + + ++ +L++ M +M S +G+GLAA Q+G L RL + Sbjct: 2 ICKRKIITHPNSLLRKRSLPVLQFDKNLESLVEEMEYLMISNNGVGLAAPQVGELSRLFI 61 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D N V INP+II V EGCLS+P V+R+ + V+ + Sbjct: 62 YKIDD-----NLQVVINPEIIEKVGS-EVDVEGCLSVPGVFGPVERAFKVIVQAQNIYGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK--RDMITKKMSKL 165 I+ +G A +QHE DHLNG LFID L+ + K+ KL Sbjct: 116 TIILNKEGYEARVIQHEFDHLNGDLFIDKAEYLETAEERAKKQKEKL 162 >gi|213618841|ref|ZP_03372667.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 103 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 42/98 (42%), Positives = 70/98 (71%), Gaps = 3/98 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ + + Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--N 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 R +V INP+++ S + + +EGCLSIP+ RA V R Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPR 103 >gi|47569494|ref|ZP_00240174.1| polypeptide deformylase [Bacillus cereus G9241] gi|47553823|gb|EAL12194.1| polypeptide deformylase [Bacillus cereus G9241] Length = 156 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPNEVLETSCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF ++R Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|68171495|ref|ZP_00544878.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88657592|ref|YP_507728.1| putative polypeptide deformylase [Ehrlichia chaffeensis str. Arkansas] gi|67999078|gb|EAM85746.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88599049|gb|ABD44518.1| putative polypeptide deformylase [Ehrlichia chaffeensis str. Arkansas] Length = 194 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 16/161 (9%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------QD 65 L +S PIEKI+ +I+ L ++M++VM + +GL+AVQ+G R+ +I++ QD Sbjct: 15 LHAISHPIEKIDQEIIALANDMMKVMEHSKTVGLSAVQLGNHSRMFIINMFSGLFDIAQD 74 Query: 66 -------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDC 117 H+ M+ INP++++FS + EGC S Y ++ R + +RY D Sbjct: 75 IKVLSGHHSLHGKNMICINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDLRYTDL 134 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I+ G L+ C+QHELDHLNGIL + + +K + + Sbjct: 135 LGNECIVRVYGWLSRCIQHELDHLNGILLANVVDNIKNNCV 175 >gi|75911263|ref|YP_325559.1| formylmethionine deformylase [Anabaena variabilis ATCC 29413] gi|75704988|gb|ABA24664.1| Formylmethionine deformylase [Anabaena variabilis ATCC 29413] Length = 179 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 10/155 (6%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++ +P LR+ + +E I ++ I LID+++ + +G+G+A+ Q+ YRL ++ Sbjct: 7 PIIQLGNPTLRQKAAWVENIHDAAIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIVAS 66 Query: 64 QD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD-- 116 + HA P INPKI+ S + EGCLS+P R V R I V Y D Sbjct: 67 RPNPRYPHAPVMEPTAMINPKIVGSSTEIVKGWEGCLSVPGIRGLVPRHQAIEVEYKDRY 126 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 N Q Q + +A QHE DHL+G+LFID + Sbjct: 127 GNLQKQTL--TDFVARIFQHEFDHLDGVLFIDRVE 159 >gi|116515231|ref|YP_802860.1| hypothetical protein BCc_313 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285373|sp|Q057D2|DEF_BUCCC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|58384664|gb|AAW72679.1| polypeptide deformylase [Buchnera aphidicola (Cinara cedri)] gi|116257085|gb|ABJ90767.1| polypeptide deformylase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 149 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 88/143 (61%), Gaps = 2/143 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 FPD LR +S+PI+ IN +I +M + MY+ +GIGLAA QI +L +++VI Sbjct: 9 FPDYRLRLLSKPIKIINKKTKKIIYDMFDTMYANNGIGLAAPQINILKQIIVIS--SLKP 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + +V INP I+ + + EGCLSIP A +KRS+ I ++ ++ + + A Sbjct: 67 TMSELVLINPVILKKNKKYINTIEGCLSIPKKTAKIKRSSCIKIQAINTYGKSFTLTAKS 126 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LL+ C+QHE+DHL G LFID+++ Sbjct: 127 LLSICIQHEIDHLIGKLFIDYIN 149 >gi|145594886|ref|YP_001159183.1| peptide deformylase [Salinispora tropica CNB-440] gi|145304223|gb|ABP54805.1| peptide deformylase [Salinispora tropica CNB-440] Length = 167 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M +P+ I DP+LR + P+ ++D+ L+ ++++ + G G+AA QIGV ++ Sbjct: 1 MTMRPIRIIGDPVLRTPAAPVTSFDADLRALVADLMDTLLGAPGRAGVAAPQIGVSAQVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D HR + INP + DD EGCLSIP R+ T R MD + Sbjct: 61 VYDAD--GHRGH---LINP-TLELGDDRQDDDEGCLSIPGLYFPTPRAMRATARGMDQHG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Q I G LA LQHE DHL G L++D L Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTL 145 >gi|220912431|ref|YP_002487740.1| peptide deformylase [Arthrobacter chlorophenolicus A6] gi|219859309|gb|ACL39651.1| peptide deformylase [Arthrobacter chlorophenolicus A6] Length = 204 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 78/150 (52%), Gaps = 9/150 (6%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-H 66 I DP+LR V+ P+ + ++ L+ +M E M DG GLAA QIGV R+ + Sbjct: 8 IIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQIGVSKRVFTYRIDGVE 67 Query: 67 AHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H INP ++ SDD+ + EGCLSIP V+R V +D + + Sbjct: 68 GH------IINP-VLENSDDYQPDHVEGCLSIPGLGFPVRRFRATRVTGVDMHGNPVSLE 120 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +G+LA C QHE DHL+G+L+ D L R Sbjct: 121 GEGMLARCFQHENDHLDGVLYTDRLEGEDR 150 >gi|255630300|gb|ACU15506.1| unknown [Glycine max] Length = 221 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 72/136 (52%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDP LR ++ I + + L+ M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 77 IVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVG 136 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP++ +S +++ EGCLS P ADVKR + + N + Sbjct: 137 EHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARGINGTMFSVN 196 Query: 126 ADGLLATCLQHELDHL 141 L A QHE DHL Sbjct: 197 LSDLPARIFQHEFDHL 212 >gi|42782959|ref|NP_980206.1| peptide deformylase [Bacillus cereus ATCC 10987] gi|49478423|ref|YP_037928.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141621|ref|YP_085208.1| peptide deformylase [Bacillus cereus E33L] gi|196035868|ref|ZP_03103270.1| peptide deformylase [Bacillus cereus W] gi|196038865|ref|ZP_03106173.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|206976769|ref|ZP_03237673.1| peptide deformylase [Bacillus cereus H3081.97] gi|217961287|ref|YP_002339855.1| peptide deformylase [Bacillus cereus AH187] gi|222097312|ref|YP_002531369.1| peptide deformylase [Bacillus cereus Q1] gi|225865848|ref|YP_002751226.1| peptide deformylase [Bacillus cereus 03BB102] gi|228916504|ref|ZP_04080070.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928915|ref|ZP_04091947.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935181|ref|ZP_04098008.1| Peptide deformylase 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947586|ref|ZP_04109876.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987010|ref|ZP_04147136.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092910|ref|ZP_04224044.1| Peptide deformylase 1 [Bacillus cereus Rock3-42] gi|229123381|ref|ZP_04252585.1| Peptide deformylase 1 [Bacillus cereus 95/8201] gi|229140513|ref|ZP_04269068.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26] gi|229157443|ref|ZP_04285521.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342] gi|229174533|ref|ZP_04302065.1| Peptide deformylase 1 [Bacillus cereus MM3] gi|229197978|ref|ZP_04324692.1| Peptide deformylase 1 [Bacillus cereus m1293] gi|254721399|ref|ZP_05183188.1| peptide deformylase [Bacillus anthracis str. A1055] gi|301055358|ref|YP_003793569.1| peptide deformylase [Bacillus anthracis CI] gi|42738886|gb|AAS42814.1| polypeptide deformylase [Bacillus cereus ATCC 10987] gi|49329979|gb|AAT60625.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975090|gb|AAU16640.1| peptide deformylase [Bacillus cereus E33L] gi|195991517|gb|EDX55483.1| peptide deformylase [Bacillus cereus W] gi|196030588|gb|EDX69187.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|206745079|gb|EDZ56482.1| peptide deformylase [Bacillus cereus H3081.97] gi|217064571|gb|ACJ78821.1| peptide deformylase [Bacillus cereus AH187] gi|221241370|gb|ACM14080.1| peptide deformylase [Bacillus cereus Q1] gi|225786088|gb|ACO26305.1| peptide deformylase [Bacillus cereus 03BB102] gi|228585457|gb|EEK43561.1| Peptide deformylase 1 [Bacillus cereus m1293] gi|228609093|gb|EEK66383.1| Peptide deformylase 1 [Bacillus cereus MM3] gi|228626170|gb|EEK82919.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342] gi|228643074|gb|EEK99350.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26] gi|228660157|gb|EEL15793.1| Peptide deformylase 1 [Bacillus cereus 95/8201] gi|228690532|gb|EEL44315.1| Peptide deformylase 1 [Bacillus cereus Rock3-42] gi|228772788|gb|EEM21228.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812106|gb|EEM58437.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824546|gb|EEM70351.1| Peptide deformylase 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830722|gb|EEM76327.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843083|gb|EEM88165.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377527|gb|ADK06431.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI] gi|324327765|gb|ADY23025.1| peptide deformylase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 156 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF ++R Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|297564644|ref|YP_003683616.1| peptide deformylase [Meiothermus silvanus DSM 9946] gi|296849093|gb|ADH62108.1| peptide deformylase [Meiothermus silvanus DSM 9946] Length = 195 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 17/180 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61 P+ ++ DP+LR+ + ++ S+I L +NM E M+ G+GLAA Q+G RL V Sbjct: 4 PIRLYGDPVLRKRASSVKDF-SEIPRLAENMFETMFEARGVGLAAPQVGRSERLFVFAEY 62 Query: 62 ----------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFI 110 + KN V +NP IT+ + EGCLSIP Y +V R I Sbjct: 63 VDAEDEEEGEEADLKTRVKNQWVMVNP-AITYRAGQQISTEGCLSIPGLYSDEVPRDLQI 121 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSKLVQLR 169 V Y + + + +G LA +QHELDHL+G LF + L + LK + + +L +++ Sbjct: 122 RVEYQNELGEKKTQEFEGYLAVVVQHELDHLDGTLFFERLPKDLKAAFLEEHRHELAEMQ 181 >gi|229031497|ref|ZP_04187497.1| Peptide deformylase [Bacillus cereus AH1271] gi|228729786|gb|EEL80766.1| Peptide deformylase [Bacillus cereus AH1271] Length = 156 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIDD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL G+LF ++R Sbjct: 122 AEGFLARAIQHEIDHLQGVLFTSKVTR 148 >gi|329576776|gb|EGG58269.1| peptide deformylase [Enterococcus faecalis TX1467] Length = 131 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 4/116 (3%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M E M + DGIGLAA QIG ++ VI++ + + R INP II S+ EGC Sbjct: 1 MYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGR---FELINPVIIE-KKGTSIDVEGC 56 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 LSIP+ V+R+ +TVRY D + + A G LA QHE+DHLNG LFID + Sbjct: 57 LSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQHEIDHLNGELFIDKM 112 >gi|332654337|ref|ZP_08420081.1| peptide deformylase [Ruminococcaceae bacterium D16] gi|332517423|gb|EGJ47028.1| peptide deformylase [Ruminococcaceae bacterium D16] Length = 152 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 7/139 (5%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69 DPILR+ + + K++ I L+D+ML+ ++ T+ G LAA Q+GVL RLVVID D Sbjct: 11 DPILRKKCKAVLKVDDKIRQLLDDMLDTLHETENGAALAANQVGVLKRLVVIDFND---- 66 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + +NPK+I+ S EGCLS P+ R +T++ ++ + I+ + Sbjct: 67 -TRLKLVNPKMISQSG-VQECVEGCLSFPNRFVKTIRPQKVTIQALNEYGEEIIVDGEDE 124 Query: 130 LATCLQHELDHLNGILFID 148 +A C HEL+HL+G++F+D Sbjct: 125 MAKCFCHELEHLDGMIFLD 143 >gi|148240675|ref|YP_001226062.1| peptide deformylase [Synechococcus sp. WH 7803] gi|147849214|emb|CAK24765.1| Peptide deformylase [Synechococcus sp. WH 7803] Length = 177 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 12/149 (8%) Query: 12 PILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 P LR+ +R IE + LID++LE + G GLAA QI +R+VV+ + A+ Sbjct: 12 PALRQRARDIEDEVFGTQQLQTLIDDLLETKAARSGAGLAAPQIDEPWRVVVVGMG--AN 69 Query: 69 RKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + P V INP+I S+ S EGCLS+P R +V+R I + + D N Sbjct: 70 PRYPEAPPVPERVLINPEITPLSEATSAGWEGCLSVPGLRGEVERWQRIHLSWRDPNGGW 129 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 +G A +QHE DHL+G+LF D L Sbjct: 130 HHEELEGFHARVVQHECDHLDGVLFPDRL 158 >gi|308173535|ref|YP_003920240.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7] gi|307606399|emb|CBI42770.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7] gi|328553532|gb|AEB24024.1| peptide deformylase [Bacillus amyloliquefaciens TA208] gi|328911676|gb|AEB63272.1| polypeptide deformylase [Bacillus amyloliquefaciens LL3] Length = 160 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 4/151 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKIVTHPAEVLETPAEEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + +NP I+ S + + EGCLS P +V R ++ V+ D + Sbjct: 61 VDIGEESGRID---LVNPVILEKSGE-QIGVEGCLSFPGVYGEVTRPDYVKVKAYDRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I+ A+G LA +QHE+DHL GILF ++ Sbjct: 117 PFIVEAEGFLARAIQHEMDHLEGILFTSKIT 147 >gi|242046748|ref|XP_002461120.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor] gi|241924497|gb|EER97641.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor] Length = 193 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH 66 DP+L ++ P + + + +ID M++VM G+GLAA QIGV R++V+ D Q++ Sbjct: 12 DPVLHEPAQEVAPGDVRSEKVQGIIDRMVDVMRKAPGVGLAAPQIGVPLRIIVLEDTQEY 71 Query: 67 ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A + P ++ INPKI S +++ EGCLS+ YRA V+R + V Sbjct: 72 ISYAPKKEIEAQDRRPFDLLIIINPKIKNTSKRTALFFEGCLSVDGYRAVVERHLDVEVS 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D N + A G A LQHE DHL G L++D + Sbjct: 132 GLDRNGSAIKVQASGWQARILQHECDHLEGTLYVDRM 168 >gi|331004325|ref|ZP_08327800.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167] gi|330411391|gb|EGG90806.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167] Length = 169 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + + ++ +N LI++M++ M +G+GLAA QIGVL R+VV Sbjct: 1 MAIRAIRVIGDSVLNKKCKEVKAVNDRTKVLIEDMIDTMREANGVGLAAPQIGVLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+++ +N V INP I+ + Y EGCLS+P VKR + V+ D + Sbjct: 61 IEIEP----ENVYVLINPVILEQYGEQEGY-EGCLSVPGKSGIVKRPNHVKVKAFDIDMN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA + HE HL G L++D Sbjct: 116 EYTLEGEGLLARAICHECAHLEGELYVD 143 >gi|206895565|ref|YP_002246726.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265] gi|206738182|gb|ACI17260.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265] Length = 171 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 7/150 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQD 65 + PD +LR ++ ++ + ++++M +M + G+GLAA Q+G+ R VVIDL D Sbjct: 5 VIPDKMLRAKAQKVKSFTEEDRRIVEDMFRLMKENEVEGVGLAAPQVGISKRFVVIDL-D 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H V INP+ + EGCLS+P V+R I V + + + + Sbjct: 64 EFHE----VLINPRWEPLGKEKEEDIEGCLSVPGVYGPVERFKKIKVSFTNLYGEKITLK 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 DG+L+ +QHE+DHL+G+LFID ++ R Sbjct: 120 LDGMLSRVVQHEVDHLDGVLFIDKITDWDR 149 >gi|220912934|ref|YP_002488243.1| peptide deformylase [Arthrobacter chlorophenolicus A6] gi|219859812|gb|ACL40154.1| peptide deformylase [Arthrobacter chlorophenolicus A6] Length = 190 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA Q+GV R+ V Sbjct: 5 PITIWGEPVLHRRASEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFVYKYA 64 Query: 65 DHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + V +NP KI + D +EGCLS P + +KR+ + V D N Sbjct: 65 NDDDAPASGVVVNPVLTLSKISGAAPDPDEEEEGCLSFPGDQYPLKRAEWARVEGFDGNG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Q A G A +QHE DHL+G L+++ L Sbjct: 125 QPVKFEATGWFARVIQHEYDHLDGKLYVNRL 155 >gi|300784243|ref|YP_003764534.1| polypeptide deformylase [Amycolatopsis mediterranei U32] gi|299793757|gb|ADJ44132.1| polypeptide deformylase [Amycolatopsis mediterranei U32] Length = 166 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 11/170 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L F DPIL+ V P+ + + L+ ++++ + GLAA QIGV R+ Sbjct: 1 MAMRELRYFGDPILKSVCDPVTVFDEKLEALVRDLVDSVKPAGRAGLAAPQIGVGLRVFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ +NP+I+ S++ EGCLS+P+ +R+ VR +D + + Sbjct: 61 YDVAGLTG-----YVVNPEIVELSEETHEINEGCLSVPELWFPTRRAMHAKVRGVDVHNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + +LA CLQHE DHL+G+L++D L+ +K S L + RD Sbjct: 116 PIEVEGEDVLAQCLQHETDHLDGVLYLDRLT------AERKKSALREARD 159 >gi|300780403|ref|ZP_07090259.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] gi|300534513|gb|EFK55572.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] Length = 200 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+VI DP+L + P+ + +++ LI +M E M + +G+GLAA QIGV RL V Sbjct: 14 RPIVIHGDPVLHTPTEPVTEPVAELKELIADMHETMDAANGVGLAANQIGVNKRLFVYHC 73 Query: 64 QDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D + NP++ + T D EGCLS+P R+ + V +D N Sbjct: 74 PDGDTMRRGTVINPVLETSDIPKTMPKDDGEDDEGCLSVPGESFPTARAEWAKVTGLDEN 133 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRD 156 + G A CLQHE+ HL+G +++D L+ R KR+ Sbjct: 134 GDPVEVEGTGFFARCLQHEVGHLDGYVYLDVLTGRYKRE 172 >gi|269794722|ref|YP_003314177.1| peptide deformylase [Sanguibacter keddieii DSM 10542] gi|269096907|gb|ACZ21343.1| peptide deformylase [Sanguibacter keddieii DSM 10542] Length = 162 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I I+ + L++++L+ + GLAA QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEITVIDDRVRGLVEDLLDTVNDDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ D +NPKI+ S+D + EGCLS+P+ +R+ + V D + Sbjct: 61 WNIDDEIG-----YVLNPKIVELSEDEYQDGDEGCLSVPNLWYPTERAWYARVEGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 ++ L+A CLQHE+DHL+G L++D L + R Sbjct: 116 NKVVVEGTELMARCLQHEVDHLDGYLYLDRLDKAVR 151 >gi|229162803|ref|ZP_04290760.1| Peptide deformylase 1 [Bacillus cereus R309803] gi|228620685|gb|EEK77554.1| Peptide deformylase 1 [Bacillus cereus R309803] Length = 156 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPAILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF ++R Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|323356569|ref|YP_004222965.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] gi|323272940|dbj|BAJ73085.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] Length = 163 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 8/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR S PIE I+ I L+ ++L+ + G+AA QIGV R Sbjct: 1 MTVRPIRLFGDPVLRAPSAPIETIDDGIHALVRDLLDTVEPPGRAGVAAPQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP ++ + + EGCLS+P + R + V +D + Sbjct: 61 YNIDGDIG-----YVLNPVLVETRGEPQLVGEGCLSVPGLWHEATRYPWAKVVGIDLDGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++ +GLLA LQHE DHL+G+L+ LSRL D + M ++ Sbjct: 116 EVVLEGEGLLAQALQHETDHLDGMLY---LSRLPADTRREAMRQI 157 >gi|196047434|ref|ZP_03114646.1| peptide deformylase [Bacillus cereus 03BB108] gi|229186107|ref|ZP_04313276.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1] gi|196021742|gb|EDX60437.1| peptide deformylase [Bacillus cereus 03BB108] gi|228597283|gb|EEK54934.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1] Length = 156 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVRHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF ++R Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|119963025|ref|YP_947573.1| peptide deformylase [Arthrobacter aurescens TC1] gi|119949884|gb|ABM08795.1| peptide deformylase [Arthrobacter aurescens TC1] Length = 190 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 9/146 (6%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-H 66 I DP+LR V+ P+ ++ L+ +M E M +G GLAA Q+GV R+ + Sbjct: 8 IIGDPVLRTVADPVTDFGPELAKLVADMTETMEDVEGAGLAAPQVGVSQRVFTYRIGGVE 67 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H INP ++ S+D+ + EGCLSIP V+R +D N + Sbjct: 68 GH------IINP-VLENSEDYQPDEVEGCLSIPGLGFPVRRYRATRATGVDLNGNPVSVE 120 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 A+G+LA C QHE DHL+G+L+ D L Sbjct: 121 AEGMLARCFQHETDHLDGVLYTDRLE 146 >gi|256394158|ref|YP_003115722.1| peptide deformylase [Catenulispora acidiphila DSM 44928] gi|256360384|gb|ACU73881.1| peptide deformylase [Catenulispora acidiphila DSM 44928] Length = 225 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 5/166 (3%) Query: 6 LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + + +L R R + + + +++ L+D+M MY G+GLAA Q+GV R+ V D Sbjct: 37 VTVVGEEVLHRPCREVAEFGTAELLQLVDDMFLTMYVAQGVGLAANQVGVDLRVFVYDCV 96 Query: 65 DHAHRKNPMVFINPKIITFSDDFS----VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ +NPK+ + QEGCLS+P ++ R + +D + + Sbjct: 97 DDDGARHVGHIVNPKLDRTPEGGQRRLVEAQEGCLSVPGPTRELPRYDHAVLHGVDVHGE 156 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++ +G A CLQHE DHL G L+ID +++ R + ++M+++ Sbjct: 157 PLVLEGEGYFARCLQHETDHLEGTLYIDRMNKKTRRGVLEEMAEVA 202 >gi|86609579|ref|YP_478341.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558121|gb|ABD03078.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 174 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 11/157 (7%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 DPIL +V+ P+ + + + +LI+ ML + G+GLAA Q+G L +++++ + + Sbjct: 10 DPILTQVAEPVTEFKTPALQDLIEGMLATLKEAQGVGLAAPQVGSLLQVLIVASRPNPRY 69 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA-QHQI 123 A + P+V +NP+++ S + + EGCLS+P+ R V R+ + V Y Q ++ Sbjct: 70 PEAPQMQPLVMVNPRLLACSSEQVLGWEGCLSVPNCRGLVARAREVEVEYYTPEGVQQRV 129 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 ++ D A QHE DHL G +F L R R ++T+ Sbjct: 130 VWQD-FPARIFQHEYDHLMGRVF---LQRQPRQLLTE 162 >gi|314923773|gb|EFS87604.1| peptide deformylase [Propionibacterium acnes HL001PA1] Length = 200 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 5/164 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + + +L +RP+ + + D+ L+ +M M +TDG+GLAA Q+GV L V D + Sbjct: 27 WGESVLHAQTRPVTEFDEDLTTLVRDMFATMNATDGVGLAATQVGVDLSLFVYICPDANN 86 Query: 69 RKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + F NP ++T + EGCLS P + R T D + Sbjct: 87 VVHHGAFCNP-VVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGNDITV 145 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 G A CLQHE DH NGI+F D LS+ R + ++ + L Sbjct: 146 TGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189 >gi|262279936|ref|ZP_06057721.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202] gi|262260287|gb|EEY79020.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202] Length = 160 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 18/151 (11%) Query: 13 ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 IL+ ++ P+ ++NSD + L M M +G+G+AA Q+ + R++++ A R Sbjct: 14 ILKLIAAPVSSSELNSDWLYGLAAAMHATMLERNGVGIAAPQVYISKRVIIV-----ASR 68 Query: 70 KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 NP +V +NP+I+ FS + + +EGCLS+PD R V+R+ + V+Y Sbjct: 69 PNPRYPDAPEMDAVVMVNPEILEFSSETLLGEEGCLSVPDERGQVERAEMVKVKYSTLQG 128 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + G A +QHE+DHLNG+LF++ + Sbjct: 129 EFVETIFHGFPARIVQHEVDHLNGVLFVERI 159 >gi|326489213|dbj|BAK01590.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 259 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH 66 DP+L ++ P + + I ++ID M+ VM G+GLAA QIGV +++V+ D Q++ Sbjct: 78 DPVLHEPAQEVSPGDVPSEKIQDIIDQMIAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEY 137 Query: 67 ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A + P +V INPK+ S + + EGCLS+ YRA V+R + V Sbjct: 138 ISYVSKEDIDAQDRCPFDLLVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLDVEVS 197 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D N + + A G A LQHE DHL G L++D + Sbjct: 198 GLDRNGRPMKVEASGWQARILQHECDHLEGTLYVDKM 234 >gi|163792491|ref|ZP_02186468.1| Formylmethionine deformylase [alpha proteobacterium BAL199] gi|159182196|gb|EDP66705.1| Formylmethionine deformylase [alpha proteobacterium BAL199] Length = 183 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K +V DP+LR V+ + + I LID+M+ + GIGLAA QIG+L R++ Sbjct: 1 MTSKSIVRVGDPVLRSVAALVPDPTAPAIRQLIDDMVASLEEAGGIGLAAPQIGILQRVL 60 Query: 60 VIDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + D P INP + D ++ EGCLSIP R +V R + V Sbjct: 61 IFWVPDARATNEPDDGPCPLTALINPVLEPLDDRMALGWEGCLSIPGLRGEVPRHLRMRV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + G A LQHE+DHL+GIL++D ++ R T+++ Sbjct: 121 TATTPEGEPFEAIVAGTRARVLQHEVDHLDGILYLDRMTDFTRFGFTEEV 170 >gi|226729275|sp|B6RGY0|DEF1A_ORYSJ RecName: Full=Peptide deformylase 1A, chloroplastic; Short=OsPDF1A; Short=PDF 1A; Flags: Precursor gi|164633052|gb|ABY64739.1| peptide deformylase 1A [Oryza sativa Japonica Group] Length = 260 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH 66 DP+L ++ P + + + +ID M+ VM G+GLAA QIGV +++V+ D Q++ Sbjct: 79 DPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEY 138 Query: 67 ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A + P +V INPK+ T S +++ EGCLS+ YRA V+R + V Sbjct: 139 ISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVS 198 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D N + + A G A LQHE DHL G L++D + Sbjct: 199 GLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTM 235 >gi|325119980|emb|CBZ55533.1| Peptide deformylase, related [Neospora caninum Liverpool] Length = 374 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 2/148 (1%) Query: 3 KKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 KK +++ P P+LR S P + + + + + +MY GIGLAA Q+G+ +++V Sbjct: 223 KKEVLVAPHPLLRLPSHPEADWMAKETKAIARELFAIMYRDGGIGLAAPQVGLSLQMIVW 282 Query: 62 DLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + VF+NP+I++ S EGCLS+P A V+R VRY Sbjct: 283 NPTGGFREVSQERVFLNPRILSLSGPLVSDVEGCLSVPGVFAPVERPMHARVRYTSLEGD 342 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + GL A +QHE+DHL+GILF+D Sbjct: 343 QHEVNLSGLEARVVQHEIDHLHGILFVD 370 >gi|299139618|ref|ZP_07032792.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] gi|298598546|gb|EFI54710.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] Length = 191 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 17/162 (10%) Query: 6 LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V +P+LR S+ + K ++ I NLID M E + G+GLAA Q+G +L VI+ Sbjct: 5 IVTVGEPVLRATSQMLSKEQILSPSIQNLIDYMRETVRDAPGVGLAAPQVGESLQLAVIE 64 Query: 63 -------------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 +++ P V +NP + + + + EGCLS+P + A V R+ Sbjct: 65 DKAEYHKNLTEAEMKERGRAAVPFHVLVNPVLEVRGESTATFFEGCLSLPGFTALVPRAK 124 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + ++I A G A LQHE+DHL+G L+ID + Sbjct: 125 EVRVTGLDHRGEPRVIEASGWYARILQHEIDHLHGTLYIDRM 166 >gi|296119004|ref|ZP_06837577.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] gi|295968102|gb|EFG81354.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] Length = 202 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +VI DP+L + P+ E I+S ++ LI +M E M + G+GLAA Q+G+ RL Sbjct: 7 MTIRAIVIHGDPVLHNPTEPVTEAIDSPELQTLIADMCETMAAAHGVGLAANQVGIAKRL 66 Query: 59 VVIDLQD---HAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 V D D H H+ NP++ + T D EGCLS+P R+ + V Sbjct: 67 FVYDCPDDDGHMHKGCIINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWAKV 126 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 ++ + + G A CLQHE+ HL+GI++ D L R KR Sbjct: 127 TGLNEKGEDIEVEGTGFFARCLQHEVGHLDGIVYTDTLIGRNKR 170 >gi|262373169|ref|ZP_06066448.1| polypeptide deformylase [Acinetobacter junii SH205] gi|262313194|gb|EEY94279.1| polypeptide deformylase [Acinetobacter junii SH205] Length = 161 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 16/140 (11%) Query: 23 KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP--------- 72 + NS+ ++ L M M +GIG+AA Q+ + R++++ A R NP Sbjct: 26 EFNSEWLLQLASAMHATMLERNGIGIAAPQVYISKRVIIV-----ASRPNPRYPDAPEMD 80 Query: 73 -MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V +NP+I+ FS + +EGCLS+PD R V+R+ + VRY + DG A Sbjct: 81 AVVMVNPEILEFSQATCLGEEGCLSVPDERGQVQRAQSVKVRYHTLQGEVIETTFDGFPA 140 Query: 132 TCLQHELDHLNGILFIDHLS 151 +QHE+DHL+G+LF++ LS Sbjct: 141 RIVQHEVDHLDGVLFVERLS 160 >gi|160933492|ref|ZP_02080880.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753] gi|156867369|gb|EDO60741.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753] Length = 162 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 76/136 (55%), Gaps = 4/136 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D IL + RP+EK + + L+D+M E + +G+GLAA Q+G+L R+V++++ D Sbjct: 11 DGILGKKCRPVEKFDPKLWMLLDDMKETLREANGVGLAAPQVGILRRVVIVNIGDE---D 67 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + INP+I+ S + EGCLS P V+R + + V+ + + I + L Sbjct: 68 GDIELINPEIVEASGEQD-GPEGCLSCPGEWGMVRRPSHVVVKAQNRRGEFFEITGEELK 126 Query: 131 ATCLQHELDHLNGILF 146 A HELDHL GILF Sbjct: 127 ARAFCHELDHLEGILF 142 >gi|119383398|ref|YP_914454.1| peptide deformylase [Paracoccus denitrificans PD1222] gi|119373165|gb|ABL68758.1| Peptide deformylase [Paracoccus denitrificans PD1222] Length = 185 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 7/149 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P++I PDP LR + P+ ++ D I L ++L MY G GLAA QIG +R+ V+D Sbjct: 29 RPILIHPDPALRVICEPVGRLGWDEIARLAADLLATMYDAGGRGLAAPQIGEGWRIFVMD 88 Query: 63 LQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 H ++ P V ++P+I + +E CLSIP V R I++R D Sbjct: 89 ---HGWKEGTPLPRVVMDPQIAPLGGEVGTMEEACLSIPGRPVSVTRPVTISMRCFDLTG 145 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 Q++ G+ A QHE DHL+G L +D Sbjct: 146 TLQLLTLTGIEARIAQHETDHLDGRLILD 174 >gi|228922621|ref|ZP_04085921.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837050|gb|EEM82391.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 156 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ ++D+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAIVDVDD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF ++R Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|290962175|ref|YP_003493357.1| polypeptide deformylase [Streptomyces scabiei 87.22] gi|260651701|emb|CBG74826.1| polypeptide deformylase [Streptomyces scabiei 87.22] Length = 156 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 3/148 (2%) Query: 20 PIEKINS---DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 P E++ ++ L+++M MY G+GLAA Q+G R+ V D D ++ + Sbjct: 4 PCEEVTEFGPELARLVEDMFATMYDARGVGLAANQVGRALRVFVYDCPDDEDVRHLGHVV 63 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP++++ EGCLS+P A V+R V + ++ G A CLQH Sbjct: 64 NPRLVSAEGIVLRGPEGCLSLPGLEAGVERYDEAAVEGFTVDGDRVRVWGSGFFARCLQH 123 Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSK 164 E DHL G ++ D LS +R + +K ++ Sbjct: 124 ECDHLEGRVYADRLSGWRRRRVLRKAAR 151 >gi|254388984|ref|ZP_05004215.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|326443292|ref|ZP_08218026.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|197702702|gb|EDY48514.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 41 TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + + V EGCLS+P A++ R + V D + Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 206 >gi|124516548|gb|EAY58056.1| Peptide deformylase [Leptospirillum rubarum] gi|206603377|gb|EDZ39857.1| Peptide deformylase [Leptospirillum sp. Group II '5-way CG'] Length = 184 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 17/168 (10%) Query: 11 DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDH 66 +PILR+++ PI ++I +D +D+M+E M +DG+GLAA Q+ V ++VVI+ +++ Sbjct: 11 NPILRKIAEPISPKEIETDEFQTFVDDMIETMRDSDGLGLAAPQVHVSKQVVVIESMEND 70 Query: 67 AHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P +V INP S + EGCLS+ + R V RS + + +D + Sbjct: 71 RYPDAPPIPLLVLINPVFKYMSKETRTGWEGCLSVDNLRGKVTRSRAVKMEALDRHGNTI 130 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + A LQHE DHL G LF+D + K MS L QL + Sbjct: 131 TLEWEDFPAVVLQHETDHLRGHLFLDRM---------KDMSTLTQLEE 169 >gi|154685988|ref|YP_001421149.1| peptide deformylase [Bacillus amyloliquefaciens FZB42] gi|154351839|gb|ABS73918.1| DefA [Bacillus amyloliquefaciens FZB42] Length = 160 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 4/151 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKIVTHPAEVLETPADEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + +NP I+ S + EGCLS P DV R ++ V+ D + Sbjct: 61 VDIGEESGRID---LVNPVILEKSGE-QTGVEGCLSFPGVYGDVTRPDYVKVKAYDRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I+ A+G LA +QHE+DHL+GILF ++ Sbjct: 117 PFILEAEGFLARAVQHEMDHLDGILFTSKIT 147 >gi|50843003|ref|YP_056230.1| polypeptide deformylase [Propionibacterium acnes KPA171202] gi|289426491|ref|ZP_06428234.1| peptide deformylase [Propionibacterium acnes SK187] gi|289428707|ref|ZP_06430390.1| peptide deformylase [Propionibacterium acnes J165] gi|295131074|ref|YP_003581737.1| peptide deformylase [Propionibacterium acnes SK137] gi|50840605|gb|AAT83272.1| polypeptide deformylase [Propionibacterium acnes KPA171202] gi|289153219|gb|EFD01937.1| peptide deformylase [Propionibacterium acnes SK187] gi|289158105|gb|EFD06325.1| peptide deformylase [Propionibacterium acnes J165] gi|291377293|gb|ADE01148.1| peptide deformylase [Propionibacterium acnes SK137] gi|313763558|gb|EFS34922.1| peptide deformylase [Propionibacterium acnes HL013PA1] gi|313773497|gb|EFS39463.1| peptide deformylase [Propionibacterium acnes HL074PA1] gi|313793950|gb|EFS41974.1| peptide deformylase [Propionibacterium acnes HL110PA1] gi|313801337|gb|EFS42588.1| peptide deformylase [Propionibacterium acnes HL110PA2] gi|313807983|gb|EFS46464.1| peptide deformylase [Propionibacterium acnes HL087PA2] gi|313811548|gb|EFS49262.1| peptide deformylase [Propionibacterium acnes HL083PA1] gi|313813394|gb|EFS51108.1| peptide deformylase [Propionibacterium acnes HL025PA1] gi|313816738|gb|EFS54452.1| peptide deformylase [Propionibacterium acnes HL059PA1] gi|313819551|gb|EFS57265.1| peptide deformylase [Propionibacterium acnes HL046PA2] gi|313822126|gb|EFS59840.1| peptide deformylase [Propionibacterium acnes HL036PA1] gi|313823640|gb|EFS61354.1| peptide deformylase [Propionibacterium acnes HL036PA2] gi|313825965|gb|EFS63679.1| peptide deformylase [Propionibacterium acnes HL063PA1] gi|313829432|gb|EFS67146.1| peptide deformylase [Propionibacterium acnes HL063PA2] gi|313831289|gb|EFS69003.1| peptide deformylase [Propionibacterium acnes HL007PA1] gi|313834899|gb|EFS72613.1| peptide deformylase [Propionibacterium acnes HL056PA1] gi|313839941|gb|EFS77655.1| peptide deformylase [Propionibacterium acnes HL086PA1] gi|314919327|gb|EFS83158.1| peptide deformylase [Propionibacterium acnes HL050PA1] gi|314920764|gb|EFS84595.1| peptide deformylase [Propionibacterium acnes HL050PA3] gi|314924710|gb|EFS88541.1| peptide deformylase [Propionibacterium acnes HL036PA3] gi|314930643|gb|EFS94474.1| peptide deformylase [Propionibacterium acnes HL067PA1] gi|314954401|gb|EFS98807.1| peptide deformylase [Propionibacterium acnes HL027PA1] gi|314957515|gb|EFT01618.1| peptide deformylase [Propionibacterium acnes HL002PA1] gi|314962119|gb|EFT06220.1| peptide deformylase [Propionibacterium acnes HL002PA2] gi|314963697|gb|EFT07797.1| peptide deformylase [Propionibacterium acnes HL082PA1] gi|314968475|gb|EFT12573.1| peptide deformylase [Propionibacterium acnes HL037PA1] gi|314974164|gb|EFT18260.1| peptide deformylase [Propionibacterium acnes HL053PA1] gi|314976545|gb|EFT20640.1| peptide deformylase [Propionibacterium acnes HL045PA1] gi|314978999|gb|EFT23093.1| peptide deformylase [Propionibacterium acnes HL072PA2] gi|314984364|gb|EFT28456.1| peptide deformylase [Propionibacterium acnes HL005PA1] gi|314986554|gb|EFT30646.1| peptide deformylase [Propionibacterium acnes HL005PA2] gi|314990913|gb|EFT35004.1| peptide deformylase [Propionibacterium acnes HL005PA3] gi|315079547|gb|EFT51540.1| peptide deformylase [Propionibacterium acnes HL053PA2] gi|315081224|gb|EFT53200.1| peptide deformylase [Propionibacterium acnes HL078PA1] gi|315083591|gb|EFT55567.1| peptide deformylase [Propionibacterium acnes HL027PA2] gi|315087107|gb|EFT59083.1| peptide deformylase [Propionibacterium acnes HL002PA3] gi|315089281|gb|EFT61257.1| peptide deformylase [Propionibacterium acnes HL072PA1] gi|315095304|gb|EFT67280.1| peptide deformylase [Propionibacterium acnes HL038PA1] gi|315099184|gb|EFT71160.1| peptide deformylase [Propionibacterium acnes HL059PA2] gi|315100332|gb|EFT72308.1| peptide deformylase [Propionibacterium acnes HL046PA1] gi|315106855|gb|EFT78831.1| peptide deformylase [Propionibacterium acnes HL030PA1] gi|315108984|gb|EFT80960.1| peptide deformylase [Propionibacterium acnes HL030PA2] gi|327328434|gb|EGE70196.1| peptide deformylase [Propionibacterium acnes HL096PA2] gi|327329700|gb|EGE71456.1| peptide deformylase [Propionibacterium acnes HL096PA3] gi|327334216|gb|EGE75930.1| peptide deformylase [Propionibacterium acnes HL097PA1] gi|327444220|gb|EGE90874.1| peptide deformylase [Propionibacterium acnes HL043PA2] gi|327444900|gb|EGE91554.1| peptide deformylase [Propionibacterium acnes HL043PA1] gi|327446386|gb|EGE93040.1| peptide deformylase [Propionibacterium acnes HL013PA2] gi|327452026|gb|EGE98680.1| peptide deformylase [Propionibacterium acnes HL092PA1] gi|327454936|gb|EGF01591.1| peptide deformylase [Propionibacterium acnes HL087PA3] gi|327457777|gb|EGF04432.1| peptide deformylase [Propionibacterium acnes HL083PA2] gi|328752375|gb|EGF65991.1| peptide deformylase [Propionibacterium acnes HL020PA1] gi|328755230|gb|EGF68846.1| peptide deformylase [Propionibacterium acnes HL087PA1] gi|328758290|gb|EGF71906.1| peptide deformylase [Propionibacterium acnes HL025PA2] gi|328760021|gb|EGF73603.1| peptide deformylase [Propionibacterium acnes HL099PA1] gi|332675954|gb|AEE72770.1| peptide deformylase 3 [Propionibacterium acnes 266] Length = 200 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + + +L +RP+ + + D+ LI +M M + DG+GLAA Q+GV L V D + Sbjct: 27 WGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVYACPDANN 86 Query: 69 RKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + F NP ++T + EGCLS P + R T D + Sbjct: 87 IVHHGAFCNP-VVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGNDITV 145 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 G A CLQHE DH NGI+F D LS+ R + ++ + L Sbjct: 146 TGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189 >gi|91794262|ref|YP_563913.1| peptide deformylase [Shewanella denitrificans OS217] gi|91716264|gb|ABE56190.1| Peptide deformylase [Shewanella denitrificans OS217] Length = 168 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 5/157 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I +PIL R++ + + ++ ++ L D+ML M + +G+G+AA Q+ + V+ + Sbjct: 8 PIAITGEPILNRIAVKVSQFDASLIQLADDMLATMMAANGVGIAAGQVHSPLAMFVMASR 67 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + N P V INP+I+++S EGCLSIPD R + RS I R+ + Sbjct: 68 PNERYPNAPVTEPRVIINPQILSYSTQTQAGIEGCLSIPDSRMSIVRSQQIDTRFQNLKG 127 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A QHE DH+ GI I+ L++ ++ Sbjct: 128 EFIEQSFSDFEARIFQHEFDHIKGITLIERLAQQQKQ 164 >gi|329943974|ref|ZP_08292243.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386] gi|328531407|gb|EGF58249.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386] Length = 163 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 6/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+LR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NPKI+ S D++ EGCLS+P +R+ + D N Sbjct: 61 WNIDGEIG-----YILNPKIVELSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGTDLNG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + ++ + L+A C+QHE DHL G L++D L R R K++ Sbjct: 116 KEVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAAAMKEL 158 >gi|332709095|ref|ZP_08429064.1| peptide deformylase [Lyngbya majuscula 3L] gi|332352146|gb|EGJ31717.1| peptide deformylase [Lyngbya majuscula 3L] Length = 178 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 8/174 (4%) Query: 1 MVKKPLVI--FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 MV + L I +PILR+ S+ + + + + LID ++ + +G+G+AA Q+ YR Sbjct: 1 MVSETLQIAQLGNPILRQHSQGVHNLLDERLQQLIDQLIATATAANGVGIAAPQVSQSYR 60 Query: 58 LVVIDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L ++ + HA P INP +I+ D EGCLSIP R V R + I V Sbjct: 61 LFIVASRPNLRYPHAPLMEPTAMINPSMISHDTDMVKDWEGCLSIPGIRGLVPRYSRIEV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Y + Q+Q +A QHE DHL GI+F+D + + M ++ K + Sbjct: 121 EYTNRYGQYQRQQLTDFVARIFQHEYDHLEGIVFLDRVESTQEMMTEEEYQKQI 174 >gi|73666812|ref|YP_302828.1| formylmethionine deformylase [Ehrlichia canis str. Jake] gi|72393953|gb|AAZ68230.1| Formylmethionine deformylase [Ehrlichia canis str. Jake] Length = 194 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 16/163 (9%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------QD 65 L +S PIEKI+ +I+ L ++M++VM + +GL+AVQ+G R+ I++ QD Sbjct: 15 LHAISHPIEKIDQEIIALANDMMKVMEDSKTVGLSAVQLGNHSRMFTINMFSGLFDVTQD 74 Query: 66 -------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDC 117 H+ MV INP++++FS + EGC S Y ++ R + RY D Sbjct: 75 IKVLSGHHSLHGKNMVCINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDFRYTDL 134 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 ++ G L+ C+QHELDHLNGIL + + +K + + Sbjct: 135 LGNKCVVRVYGWLSRCIQHELDHLNGILLANVVDNIKNNCVNS 177 >gi|314914712|gb|EFS78543.1| peptide deformylase [Propionibacterium acnes HL005PA4] Length = 200 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + + +L +RP+ + + D+ LI +M M + DG+GLAA Q+GV L V D + Sbjct: 27 WGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVYACPDANN 86 Query: 69 RKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + F NP ++T + EGCLS P + R T D + Sbjct: 87 IVHHGAFCNP-VVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGNDITV 145 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 G A CLQHE DH NGI+F D LS+ R + ++ + L Sbjct: 146 TGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189 >gi|307328361|ref|ZP_07607537.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306885934|gb|EFN16944.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 170 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 2/142 (1%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP LR + ++++ LI++M MY+ G+GLAA QIGV R+ V D D + Sbjct: 6 DPGLRAPCAEVTAFDAELALLIEDMYATMYAAHGVGLAANQIGVGLRVFVFDCPDDEDHR 65 Query: 71 NPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + +NP++ +D +V+ EGCLS+P A R + + + I G Sbjct: 66 HLGHVVNPRLAA-ADGVNVHGPEGCLSLPGIEAGTSRYDRAVIEGVTMTGEPVRIEGTGF 124 Query: 130 LATCLQHELDHLNGILFIDHLS 151 A CLQHE DHL+G LF+D LS Sbjct: 125 FARCLQHECDHLDGGLFLDRLS 146 >gi|167760430|ref|ZP_02432557.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704] gi|167661929|gb|EDS06059.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704] Length = 165 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 54/138 (39%), Positives = 84/138 (60%), Gaps = 6/138 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L + + + KI LI++ML+ MY G+GLAA Q+GVL R+VVID+ + Sbjct: 19 DEVLTKPCKEVTKITLRTKVLINDMLDTMYEALGVGLAAPQVGVLKRIVVIDVGE----- 73 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V INP+II S + S +EGCLS+P V R ++ VR ++ + + + +GLL Sbjct: 74 GPIVLINPEIIETSGEQS-GEEGCLSVPGKSGMVTRPDYVKVRALNEDMEEIELEGEGLL 132 Query: 131 ATCLQHELDHLNGILFID 148 A HE+DHL+G +++D Sbjct: 133 ARAFCHEIDHLDGRMYVD 150 >gi|302830440|ref|XP_002946786.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f. nagariensis] gi|300267830|gb|EFJ52012.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f. nagariensis] Length = 257 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 24/164 (14%) Query: 12 PILRRVSR--PIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDHA 67 P+LR+V+R P E + S+ + NL+ M VM + G+GLAA QIG +R++V+ D +++ Sbjct: 57 PVLRQVAREVPPELLGSEWLRNLVATMTSVMRAAPGVGLAAPQIGEPWRVIVLEDREEYI 116 Query: 68 HRK-------------------NPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRS 107 R+ P+V +NP+ + + + + EGCLS+ Y A V R Sbjct: 117 VRQAASGMYDDDTLAAMERRAFGPLVLVNPRGLRPVGHEGAAFFEGCLSVRGYVAVVPRY 176 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + +D ++ A G +A LQHE DHL GIL++D ++ Sbjct: 177 RIVELEAVDPAGLPVVVRASGWMARILQHEFDHLQGILYVDRMA 220 >gi|50955168|ref|YP_062456.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951650|gb|AAT89351.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 163 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +F DP+L+ +S P+ +++ + +L+ ++++ + G+AA QIGV R Sbjct: 1 MTERQIRLFGDPVLKTLSEPVGELDESVRSLVQDLVDTVLPPGRAGVAAPQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP+++ S + + EGCLS+P R F VR +D + Sbjct: 61 YNVDGEVG-----YILNPELVEVSGEPELVDEGCLSVPGLWFKTVRYPFARVRGIDLDGA 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G++A LQHE DHL G L++D L R R K++ + Sbjct: 116 EIELSGTGVMAQALQHETDHLEGKLYLDRLDRGSRREAMKQIRE 159 >gi|284032219|ref|YP_003382150.1| peptide deformylase [Kribbella flavida DSM 17836] gi|283811512|gb|ADB33351.1| peptide deformylase [Kribbella flavida DSM 17836] Length = 182 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+L + P+ ++++ L+ ++ + M + G GLAA QIGV R+ Sbjct: 1 MSVQPIRLFGDPVLTTKADPVVDFDAELRRLVADLTDTMQAAPGSGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + INP++ T S + EGCLSIP D +R+ + + Sbjct: 61 YHVDGELGH-----LINPEL-TLSAEQQFGPEGCLSIPGLTFDCRRAERVIAKGFTMYGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +I LLA C+QHE DHL+G+LF+D L R K + + Sbjct: 115 PVVIEGSDLLARCIQHETDHLDGVLFVDRLDTATRKAAMKAIRE 158 >gi|254422211|ref|ZP_05035929.1| peptide deformylase [Synechococcus sp. PCC 7335] gi|196189700|gb|EDX84664.1| peptide deformylase [Synechococcus sp. PCC 7335] Length = 176 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 8/147 (5%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD---- 65 DP+LR + + +++ + LID ++ + +G+G+AA Q+ +L ++ + Sbjct: 12 DPVLRSPADKVCDVHTPAVQTLIDQLISLTLERNGVGIAAPQVSHSLQLFIVASRPNLRY 71 Query: 66 -HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD-CNAQHQI 123 HA + +P INP+I+ +SD + EGCLS+P R VKRS I V Y D Q Q Sbjct: 72 LHAPKMDPTAMINPQILHYSDAVTAGWEGCLSVPGMRGLVKRSKEIEVSYTDRYGQQQQQ 131 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150 I+ D +A +QHE DH+NG +F+D + Sbjct: 132 IFTD-FVARIIQHEYDHINGKVFLDRI 157 >gi|84496887|ref|ZP_00995741.1| peptide deformylase [Janibacter sp. HTCC2649] gi|84383655|gb|EAP99536.1| peptide deformylase [Janibacter sp. HTCC2649] Length = 217 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 7/156 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I +P+L R + +E I+ I L+ +M E M + G+GLAA Q+GV R+ Sbjct: 1 MTIRPITITGEPVLHRRAESVEVIDDGIRELVADMFETMDAARGVGLAAPQVGVGLRIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSV------YQEGCLSIPDYRADVKRSAFITVRY 114 + +H V INP +T S + EGCLS+P ++R T+ Sbjct: 61 WQMDNHDGIPPRGVVINP-FVTASKPVAGDPVPADESEGCLSVPGESFPLRRGETATLTG 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D + A G A QHE DHLNG L++D L Sbjct: 120 LDLDGNDVSYAATGWFARMFQHEYDHLNGFLYVDRL 155 >gi|319950533|ref|ZP_08024443.1| peptide deformylase [Dietzia cinnamea P4] gi|319435783|gb|EFV90993.1| peptide deformylase [Dietzia cinnamea P4] Length = 184 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 5/151 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ +F DP+LR + P+ + + + ++++ + +G GLAA QIG+ R+ V Sbjct: 5 PVRLFGDPVLRTAADPVTSFDDRLARTVTDLMDTVAHEEGAGLAAPQIGLSTRVFVYTC- 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 R+ +V NP+ ++ + EGCLSIP +R A + R D Sbjct: 64 --GGRRGHLV--NPEWEAIGNETTEVNEGCLSIPGVSMPTERFARVRARGFDMKGDPVSF 119 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A+G+LA +QHE+DHL+G+LF+ L+ +R Sbjct: 120 EAEGILARAVQHEIDHLDGVLFLQRLTPERR 150 >gi|170744220|ref|YP_001772875.1| peptide deformylase [Methylobacterium sp. 4-46] gi|168198494|gb|ACA20441.1| formylmethionine deformylase [Methylobacterium sp. 4-46] Length = 165 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 3/144 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 PL+ +PD LRR P + + ++ E + + IGL +G RL VI L Sbjct: 5 PLLRYPDACLRRAVPPAALPDPRVAAFAADLAETLDAHRAIGLTGPHVGASIRLTVIRLG 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A M +NP+++ S + + ++EG +++P +V+R A + VRY D + + + Sbjct: 65 PGAPL---MTCVNPQVVHASPETARHREGSVAMPGVDEEVERPARVRVRYQDLDGTAREV 121 Query: 125 YADGLLATCLQHELDHLNGILFID 148 A+G LA CLQHE+D L+G+ + + Sbjct: 122 EAEGFLAACLQHEIDQLDGVFWTE 145 >gi|313239303|emb|CBY14251.1| unnamed protein product [Oikopleura dioica] Length = 165 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 14/152 (9%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP LR +S+ +E + D+ +++ M V D +GLAA QIG+ R++++ LQ+ + Sbjct: 22 DPKLREISKKVENYD-DLGKIVEEMKSVARKYDALGLAAPQIGINQRIILLTLQNGKEK- 79 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY----A 126 +F+NP II S EGCLS+P A V R I ++ D ++ Sbjct: 80 ---IFVNPVIIGKSSKIVPSIEGCLSVPALVASVPRHESIRLKAFDFGKGKEVTEDFKEE 136 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 D CLQHE+DHLNGILF+D + +++MI Sbjct: 137 DSF---CLQHEIDHLNGILFLDRVE--EKEMI 163 >gi|302529604|ref|ZP_07281946.1| polypeptide deformylase [Streptomyces sp. AA4] gi|302438499|gb|EFL10315.1| polypeptide deformylase [Streptomyces sp. AA4] Length = 218 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 20/162 (12%) Query: 5 PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR +RP E SD + LI+ M E M++ G+GLAA QIG+ R+ V+ Sbjct: 25 PIVQAGDPVLRAAARPYEGELSDDTLSALIEGMKETMHAAPGVGLAAPQIGLSVRIAVV- 83 Query: 63 LQDHAHRKN-------------PMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 +D A + P+ F +NP D+ + + EGCLS+ ++A V R Sbjct: 84 -EDGARERPGVAESTLATRGIVPLPFRVLVNPTYTRVGDETAAFFEGCLSVRGWQAVVAR 142 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + I +R D G A +QHE DHL+G+L++D Sbjct: 143 ALRIRLRGSDETGASLDEELSGWPARIVQHETDHLHGVLYLD 184 >gi|282895330|ref|ZP_06303532.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9] gi|281199636|gb|EFA74496.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9] Length = 178 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 8/164 (4%) Query: 13 ILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-----H 66 +L++ + IE IN +I LID+++ + ++G+G+AA Q+ RL ++ + H Sbjct: 14 LLQQKATEIEAINDREIQQLIDHLITTVAQSNGVGIAAPQVAQSLRLFIVASRPNPRYPH 73 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 A P INPKI+ + + + EGCLS+P R V R I V Y D N Q Sbjct: 74 APEMEPTPMINPKIVGYGTEITKGWEGCLSVPGIRGLVPRYERIQVEYTDRNGNFQKQEL 133 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITK-KMSKLVQLR 169 +A QHE DHL G++F+D + +D+I++ + KL+ R Sbjct: 134 VNFVARIFQHEYDHLEGLVFLDRVES-PQDLISEAEYQKLMNQR 176 >gi|294814920|ref|ZP_06773563.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|294327519|gb|EFG09162.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 41 TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + + V EGCLS+P A++ R + V D + Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M + Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMPE 206 >gi|254468385|ref|ZP_05081791.1| peptide deformylase [beta proteobacterium KB13] gi|207087195|gb|EDZ64478.1| peptide deformylase [beta proteobacterium KB13] Length = 162 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 77/143 (53%), Gaps = 9/143 (6%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--IDLQDHAH 68 +P L +VS P++ D+ LID+M E M + DG GLAA QIGV RLV+ D D Sbjct: 3 NPELLKVSEPVDFEKEDLTTLIDDMKETMKANDGAGLAAPQIGVFKRLVIFGFDTNDRYP 62 Query: 69 RKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124 + + F INP I SD+ EGCLS+P R V R F ++Y +A+ I Sbjct: 63 EADSVPFTVLINPIITPLSDEKENGWEGCLSVPGLRGVVPR--FTHIKYEGYDAEGNKIE 120 Query: 125 -YADGLLATCLQHELDHLNGILF 146 + A +QHE DHL+GIL+ Sbjct: 121 REVEDFHARVVQHECDHLDGILY 143 >gi|295395930|ref|ZP_06806115.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] gi|294971203|gb|EFG47093.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] Length = 164 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DP+LR V P+ + + L ++L+ +AA QIGV R Sbjct: 1 MANRTIRTFGDPVLRTVCEPVTQFGESTVALAQDLLDTAAPEGRAAVAAPQIGVAVRAFG 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 DL H + +VF NP+++T + + EGCLS+P R F TV +D + Q Sbjct: 61 YDL----HGRRGVVF-NPEVVTRGERRDI-DEGCLSVPGLFFPTPRYEFATVHGVDEHGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + DG+ A LQHE DHLNG++++ L +R +++ + Sbjct: 115 PIEVSGDGVFAQMLQHETDHLNGVVYVQTLPSERRKEAMRQIRQ 158 >gi|309811979|ref|ZP_07705745.1| peptide deformylase [Dermacoccus sp. Ellin185] gi|308434037|gb|EFP57903.1| peptide deformylase [Dermacoccus sp. Ellin185] Length = 191 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I L ++ +++I D L+++M E M + +G+GLAA Q+GV R+ V Sbjct: 1 MAVRPITIVGHKALHAPTKRVKEITDDTRALVEDMFETMEAANGVGLAANQVGVKQRIFV 60 Query: 61 IDLQDHAHRKNPM-VFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D N V INPK + D EGCLS+P R+ + V Sbjct: 61 FDCPDDELGDNRRGVVINPKLEKGRVPAGEADEENDNEGCLSVPGEHFPTARADWAKVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + +I G A LQHE DHL+G L++D L+ R Sbjct: 121 TDLDGNEIVIEGHGFFARMLQHETDHLDGYLYLDRLTPTMR 161 >gi|255994858|ref|ZP_05427993.1| peptide deformylase [Eubacterium saphenum ATCC 49989] gi|255993571|gb|EEU03660.1| peptide deformylase [Eubacterium saphenum ATCC 49989] Length = 154 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 5/145 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +LR+ +RP+ ++ I L+ +M E M+ G+G+AA Q+G+L R+ +++ + Sbjct: 11 DELLRKKARPVGEVTDRIKLLLQDMEETMHKEGGVGIAAPQVGILKRMFIME----PVQG 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +P I+P+II S + +EGCLS+P V R I V+Y + + + Sbjct: 67 SPEYVIDPEIIKASGEQEC-EEGCLSVPGVVGTVIRPEKIEVKYTGLDGKERRRLLTEFE 125 Query: 131 ATCLQHELDHLNGILFIDHLSRLKR 155 A HE DHL G+LFID S +++ Sbjct: 126 AIVFSHEFDHLEGVLFIDKASNIRK 150 >gi|256832744|ref|YP_003161471.1| peptide deformylase [Jonesia denitrificans DSM 20603] gi|256686275|gb|ACV09168.1| peptide deformylase [Jonesia denitrificans DSM 20603] Length = 162 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 9/166 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MAMREIRVVPDPVLRTKCDEITHIDDRVKGLVEDLLETVDMEGRAGLAANQIGVNLRAFA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ D + INP+I+ S++ + EGCLS+P +R + V +D + Sbjct: 61 YNIDD-----DLGYVINPRIVELSEESYQDGDEGCLSVPGLWYPTRRHMYARVEGIDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + L+ CLQHE+DHL+G+L++D RL+R + + M +L Sbjct: 116 RPLTVEGTDLMGRCLQHEVDHLDGLLYLD---RLERSVRRRAMQEL 158 >gi|319649622|ref|ZP_08003778.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] gi|317398784|gb|EFV79466.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] Length = 161 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V +P +L P++ + + L+++M + M DG+GLAA QIG+ ++ + Sbjct: 1 MAVKKIVSYPAEVLEAECEPVKVFDKKLGKLLNDMYDTMIEFDGVGLAAPQIGLSRQIAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP+I+ + + EGCLS P +V R ++ ++ D + Sbjct: 61 VDIDDEF---GTIEIINPEILETNGE-QTGPEGCLSFPGLYGEVTRPEYVKIKAQDRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + A+ LA + HE+DHL+G+LF ++R Sbjct: 117 YFTLEAEDFLARAILHEIDHLHGVLFTSKVTR 148 >gi|187734744|ref|YP_001876856.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] gi|187424796|gb|ACD04075.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] Length = 226 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 17/169 (10%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 + P+LR P+ IN DI++ +D+M E + + GIGLAA Q+G +LV I++ Sbjct: 20 YGHPLLREECGPVVHINRDILSFLDDMQETL-AQGGIGLAAPQVGRPIQLVTINIPSTDA 78 Query: 67 -------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R P+ FINP + F Y+EGCLSI A+V R + + Sbjct: 79 TTTWLEVDGCPTTLSRIMPLNFINPILHPFGKKVP-YREGCLSITKVYANVMRRSCVRAV 137 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + + + +GLLA CLQHE+DHL+G LF D +S D + +++ Sbjct: 138 LTMMDGRTVTVKCNGLLARCLQHEVDHLHGGLFTDLVSSGDHDKVIRRL 186 >gi|117926769|ref|YP_867386.1| peptide deformylase [Magnetococcus sp. MC-1] gi|117610525|gb|ABK45980.1| peptide deformylase [Magnetococcus sp. MC-1] Length = 177 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 13/167 (7%) Query: 6 LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61 ++++PD L + R +E + +++++E G +GLAA Q+ R+VV+ Sbjct: 6 VLVYPDQRLLQPCRSLEAEEFKTAAFQAFVEDLIETTQHAPGCVGLAAPQVDHAIRMVVV 65 Query: 62 DLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + RK P ++ NP+II++ + +EGC+S+PDY +V R+ I+V++ Sbjct: 66 NCG--LARKPPDEHHGELILCNPEIISW-EGMETAREGCMSVPDYTGNVMRATHISVQFQ 122 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + Q Q+ + G A +QHE+DHL G LF D + K D+ +K+ Sbjct: 123 DRHGQEQVRHFKGFEARVVQHEMDHLEGKLFTDRVVSRKADLFPRKV 169 >gi|126641011|ref|YP_001083995.1| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978] Length = 122 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 5/122 (4%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKNPMVFINPKIITFSDDFSV 89 M M +G+G+AA Q+ + R++++ + + A N +V +NP+I+ FS + + Sbjct: 1 MHATMLERNGVGIAAPQVYISKRIIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCL 60 Query: 90 YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +EGCLS+PD R V+R+ + V+Y+ + G A +QHE+DHLNGILF++ Sbjct: 61 GEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVER 120 Query: 150 LS 151 +S Sbjct: 121 IS 122 >gi|111219523|ref|YP_710317.1| peptide deformylase 3 (PDF 3) (polypeptide deformylase 3) [Frankia alni ACN14a] gi|111147055|emb|CAJ58702.1| Peptide deformylase 3 (PDF 3) (Polypeptide deformylase 3) [Frankia alni ACN14a] Length = 224 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 6 LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + +P+L R R I + + ++ LID+M MY +G+GLAA QI V L V D Sbjct: 44 ITVVGEPVLHRPCRKITEFGTPELAALIDDMFATMYGAEGVGLAANQIDVDAALFVYDCT 103 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ NP++ SD +EGCLS+P +V R VR D Sbjct: 104 DEDGVRHVGHLANPEL-EESDPAERRLVKGEEGCLSVPGAYMEVARLERAAVRGQDATGA 162 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + G A CLQHE DHL G L++D LS R K+M + + Sbjct: 163 PLRLEGTGYFARCLQHETDHLYGGLYLDRLSSRGRKKALKEMEERAE 209 >gi|110801598|ref|YP_698920.1| polypeptide deformylase [Clostridium perfringens SM101] gi|110682099|gb|ABG85469.1| peptide deformylase [Clostridium perfringens SM101] Length = 155 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V L++VS P++ +N ++ LI ++ + + + +GIGLAA QI V R+V Sbjct: 1 MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ D +N V INP++I S + EGCLS + V+R + ++ ++ + Sbjct: 60 INFGDG---ENEYVLINPEVIGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ A LLA C HE+DHL GI+++D + Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149 >gi|229820291|ref|YP_002881817.1| peptide deformylase [Beutenbergia cavernae DSM 12333] gi|229566204|gb|ACQ80055.1| peptide deformylase [Beutenbergia cavernae DSM 12333] Length = 162 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 10/158 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+LR I I+ + L+D+++E + GLAA QIGV R Sbjct: 1 MAFRDIRVVGDPVLRTPCEEITVIDDRVRTLVDDLVETVDHEGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDC 117 ++ D +NP+I+ S+D YQ EGCLS+P R+ + V D Sbjct: 61 WNIDDEVG-----YVLNPRIVELSED--TYQDGDEGCLSVPGLWFPTNRAWYAKVVGTDL 113 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + ++ L+A CLQHE+DHL+G+L+ID L R R Sbjct: 114 DGAEVVVEGTELMARCLQHEVDHLDGMLYIDRLERSVR 151 >gi|119716668|ref|YP_923633.1| peptide deformylase [Nocardioides sp. JS614] gi|119537329|gb|ABL81946.1| peptide deformylase [Nocardioides sp. JS614] Length = 181 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR+ + + + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAIQPIRLFGDPVLRKPAIEVVDFDKELRRLVADLTDTMMDAPGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + P +NP++ SD+ EGCLSIP D +R+ R + Sbjct: 61 WYVD-----GEPGHLVNPQL-DLSDELQDGPEGCLSIPGLSVDCQRAMAAVARGFNMYGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I LLA LQHE DHL+G+LFID L R K + + Sbjct: 115 PVTIEGTELLARALQHETDHLDGVLFIDRLDTEARKAAMKAIRE 158 >gi|87303617|ref|ZP_01086396.1| Formylmethionine deformylase [Synechococcus sp. WH 5701] gi|87281841|gb|EAQ73805.1| Formylmethionine deformylase [Synechococcus sp. WH 5701] Length = 232 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 6/171 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ ++ DP LR+VSRP+ + + +++ LI ++ + M + DG GLAA QI V R+V Sbjct: 10 MAERTVLRLGDPRLRQVSRPVTRFGTPELLALITDLRDTMAARDGAGLAAPQIAVPLRVV 69 Query: 60 VIDLQ-DHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + + + + P V INP+I EGCLS+P R V R I R Sbjct: 70 IFGITVNPRYPEAPPIPETVLINPEITPIDQACDSGWEGCLSVPGLRGQVSRWRRIHYRG 129 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D G A +QHE DHL+G+LF D L + T+++ Sbjct: 130 FDAEGHLIARSVAGFHARVVQHECDHLDGVLFPDRLEDTRALGFTEELEAW 180 >gi|88606748|ref|YP_505874.1| peptide deformylase, truncation [Anaplasma phagocytophilum HZ] gi|88597811|gb|ABD43281.1| peptide deformylase, truncated [Anaplasma phagocytophilum HZ] Length = 91 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 40/85 (47%), Positives = 58/85 (68%) Query: 84 SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 S D +EGCLS+P+ R V R + ++Y D + + +I+ A GLL+ CLQHE+DHLNG Sbjct: 4 SFDLVSMEEGCLSVPNQRELVVRPERVVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNG 63 Query: 144 ILFIDHLSRLKRDMITKKMSKLVQL 168 +FI H+S+LKRD++ +KM K L Sbjct: 64 TVFIKHISKLKRDLVMQKMRKAASL 88 >gi|302544000|ref|ZP_07296342.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302461618|gb|EFL24711.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 205 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 81/159 (50%), Gaps = 15/159 (9%) Query: 17 VSRPIEKINS----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH------ 66 +SRP +++ + ++ LID+M MY DG GLAA Q+GV RL V D D Sbjct: 28 LSRPCQEVTTFGTPELAALIDDMFLTMYVADGAGLAANQVGVDLRLFVYDCPDETGARHV 87 Query: 67 AHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H NP++ + +P DD EGCLS+P V R+ VR D + +I Sbjct: 88 GHILNPVLDLPDPGDRRLVDDI----EGCLSVPGAAMAVPRTDRAVVRGFDKDGNPLVIE 143 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G A CLQHE DHL G L++D LS+ R ++M + Sbjct: 144 GQGYFARCLQHETDHLMGHLYLDRLSQRDRKDALRQMEE 182 >gi|282854675|ref|ZP_06264010.1| peptide deformylase [Propionibacterium acnes J139] gi|282582257|gb|EFB87639.1| peptide deformylase [Propionibacterium acnes J139] gi|314966213|gb|EFT10312.1| peptide deformylase [Propionibacterium acnes HL082PA2] gi|314981979|gb|EFT26072.1| peptide deformylase [Propionibacterium acnes HL110PA3] gi|315090890|gb|EFT62866.1| peptide deformylase [Propionibacterium acnes HL110PA4] gi|315095103|gb|EFT67079.1| peptide deformylase [Propionibacterium acnes HL060PA1] gi|315104332|gb|EFT76308.1| peptide deformylase [Propionibacterium acnes HL050PA2] gi|327328118|gb|EGE69887.1| peptide deformylase [Propionibacterium acnes HL103PA1] Length = 200 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + + +L +RP+ + + D+ L+ +M M + DG+GLAA Q+GV L V D + Sbjct: 27 WGESVLHAQTRPVTEFDEDLTTLVRDMFATMNAADGVGLAATQVGVDLSLFVYICPDANN 86 Query: 69 RKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + F NP ++T + EGCLS P + R T D + Sbjct: 87 VVHHGAFCNP-VVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGNDITV 145 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 G A CLQHE DH NGI+F D LS+ R + ++ + L Sbjct: 146 TGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189 >gi|256789194|ref|ZP_05527625.1| polypeptide deformylase [Streptomyces lividans TK24] gi|23396573|sp|Q9FCA2|DEF2_STRCO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 Length = 179 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 78/166 (46%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL + DP+L + ++ L++++ MY+ G+GLAA Q+G R+ V D Sbjct: 14 RPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 74 PDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPVT 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G A CLQHE DHL G ++ D L+ + + +++++ R Sbjct: 134 VRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVARASWHR 179 >gi|169837129|ref|ZP_02870317.1| peptide deformylase [candidate division TM7 single-cell isolate TM7a] Length = 191 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 8/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIG 53 M K+ ++ P+ LR+ S+ I I ++ LI +M + LAAVQ+ Sbjct: 1 MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 60 Query: 54 VLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L R+V++ + D+ + INP+II + + + EGCLS+ V R + V Sbjct: 61 KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + ++ + + I A+G LA LQHE+DH NGI+FIDH+ K Sbjct: 121 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHIKNKK 162 >gi|58038609|ref|YP_190573.1| polypeptide deformylase [Gluconobacter oxydans 621H] gi|58001023|gb|AAW59917.1| Polypeptide deformylase [Gluconobacter oxydans 621H] Length = 170 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 80/151 (52%), Gaps = 6/151 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--A 67 +P+L +V++ + + +I +LI +MLE M G GLAA Q+ R+ V + + A Sbjct: 11 NPVLHQVAQAVSDPKAPEIQSLIADMLETMADARGAGLAAPQVHQPLRIFVYHVPTNRVA 70 Query: 68 HRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + P V INP+I D+ V EGCLSIP RADV R A + +D N Sbjct: 71 NPEEALLPRVLINPEITPVGDEMMVCSEGCLSIPGLRADVPRHAKVRYSGLDENGAVLEG 130 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A LQHE DHLNGIL+ ++ R Sbjct: 131 EATGFHANVLQHENDHLNGILYPQRITDFAR 161 >gi|300866152|ref|ZP_07110873.1| peptide deformylase [Oscillatoria sp. PCC 6506] gi|300335864|emb|CBN56033.1| peptide deformylase [Oscillatoria sp. PCC 6506] Length = 177 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 6/162 (3%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD---- 65 +P+LRR ++ IE + + + LIDN++ + +G+G+AA Q+ YRL+++ + Sbjct: 12 NPVLRRQAQTIENLEDEQLQKLIDNLIHTAQNANGVGIAAPQVAQSYRLLIVASRPSTRY 71 Query: 66 -HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P INP+II S+D EGCLSIP R V R I + Y + + Sbjct: 72 PQAPTMEPTAMINPQIIARSNDVVKDWEGCLSIPGIRGLVPRYQAIEIEYTARDGKLHRQ 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +A QHE DHL+G++F+D + + M ++ + + Sbjct: 132 ELRDFVARIFQHEYDHLDGLVFLDRVENAQELMAEEEYQEQI 173 >gi|54027275|ref|YP_121517.1| peptide deformylase [Nocardia farcinica IFM 10152] gi|54018783|dbj|BAD60153.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152] Length = 196 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI DP+L + + + ++ LI +M E M + +G+GLAA Q+GV RL V D Sbjct: 5 PIVIVGDPVLHNPTERVTQTPEELAGLIADMYETMDAANGVGLAANQVGVPLRLFVYDCP 64 Query: 65 DHAHRKNPM----VFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D P+ INP + T D +EGCLS+P + R+ + V + Sbjct: 65 DAGPDGQPVRRRGAVINPVLETSEIPETMPDPDDDEEGCLSVPGEQFPTGRAEWARVTGI 124 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D N I G A LQHE+ HL+G L++D L Sbjct: 125 DENGGPVDIEGKGFFARMLQHEVGHLDGYLYVDKL 159 >gi|114778706|ref|ZP_01453518.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1] gi|114551068|gb|EAU53630.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1] Length = 169 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 4/154 (2%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V + SD+ + VM + G+G+AA QIG R++VID ++ Sbjct: 16 PDERLRQVCPDVTDFGSDLEARFAQLDAVMRAAPGGVGIAAPQIGWQQRMIVIDCRESLR 75 Query: 69 --RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + N +++++ +I + ++ +EGCLS+PD+ A V+R+ + V Y D + + + Sbjct: 76 PCKNNGLLWMSNPVIESVEGKALGREGCLSVPDWVAMVERARSLQVSYDDVHGDRLSLES 135 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 G A +QHELDHL+GILFID + RD++ + Sbjct: 136 TGFEARVIQHELDHLDGILFIDRVVS-ARDLVRR 168 >gi|21219721|ref|NP_625500.1| polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|289773087|ref|ZP_06532465.1| polypeptide deformylase [Streptomyces lividans TK24] gi|9716195|emb|CAC01493.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|289703286|gb|EFD70715.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 217 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 78/166 (46%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL + DP+L + ++ L++++ MY+ G+GLAA Q+G R+ V D Sbjct: 52 RPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYDC 111 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 112 PDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPVT 171 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G A CLQHE DHL G ++ D L+ + + +++++ R Sbjct: 172 VRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVARASWHR 217 >gi|213026865|ref|ZP_03341312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 98 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 67/93 (72%), Gaps = 3/93 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ + + Sbjct: 9 IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--N 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 R +V INP+++ S + + +EGCLSIP+ R Sbjct: 67 RDERLVLINPELLEKSGETGI-EEGCLSIPEQR 98 >gi|72162832|ref|YP_290489.1| peptide deformylase [Thermobifida fusca YX] gi|71916564|gb|AAZ56466.1| peptide deformylase [Thermobifida fusca YX] Length = 185 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+P+V+F DP+L + PI N LI ++++ + + G+AA QIGV Sbjct: 1 MTKRPIVLFGDPVLSTPAAPITTFNRHTEALIRDLMDTVDAPGRAGVAAPQIGV------ 54 Query: 61 IDLQDHAHRKNPMV--FINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDC 117 L+ ++R + + INP+I+ S++ EGCLS+P R+ V+ +D Sbjct: 55 -GLRAFSYRVDGQIGYVINPEIVELSEEIQEDGNEGCLSVPGLWYPTPRARRAVVKGVDL 113 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ++ G++A CLQHE DHL G L++D L R +++ + Sbjct: 114 RNEPVVVAGTGVMARCLQHETDHLAGKLYLDRLPPETRRAAMREIRR 160 >gi|119964524|ref|YP_948136.1| peptide deformylase [Arthrobacter aurescens TC1] gi|119951383|gb|ABM10294.1| peptide deformylase [Arthrobacter aurescens TC1] Length = 190 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 7/152 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA QIGV RL V Sbjct: 5 PVTIWGEPVLHRRASEVEVFDDELRALIADMFETNDAANGVGLAAPQIGVGKRLFVYKYA 64 Query: 65 DHAHRKNPMVFINPKIITFSD------DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + V +NP ++T S D + EGCLS P ++R+ + V+ D N Sbjct: 65 NDDDVPEQGVVVNP-VLTLSKVSGALPDPDEHVEGCLSFPGEYYPLQRAEWTRVQGFDGN 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 A G A LQHE DHL+GIL+++ L Sbjct: 124 GNALDFEATGWFARILQHEFDHLDGILYVNRL 155 >gi|317125290|ref|YP_004099402.1| peptide deformylase [Intrasporangium calvum DSM 43043] gi|315589378|gb|ADU48675.1| peptide deformylase [Intrasporangium calvum DSM 43043] Length = 215 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 11/173 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI +P+L R + + + + ++ L+ +M E + +G+GLAA QIGV R+ + Sbjct: 1 MAVRPIVISGEPVLHRSAALVTEFDDELRQLVGDMHETNDAANGVGLAAPQIGVGLRVFI 60 Query: 61 IDLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + H NP V + +I D EGCLS+P +KR+ V Sbjct: 61 WKMDNEDGVPARGHIINPTVRTS-RIPQERPDPREETEGCLSVPGESFPLKRAERAHVVG 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +D A G A C+QHE DHLNG L++D L D KK K V+ Sbjct: 120 LDLEQNRVEFDATGWFARCMQHEYDHLNGTLYVDRLD----DRQAKKARKAVK 168 >gi|291530592|emb|CBK96177.1| peptide deformylase [Eubacterium siraeum 70/3] gi|291557816|emb|CBL34933.1| peptide deformylase [Eubacterium siraeum V10Sc8a] Length = 160 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 80/153 (52%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ + D LR+ + + + + ++D+M E M +G+GLAA QI VL R+VV Sbjct: 1 MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D H K + INP +IT EGCLS+P V R A + V+ D + Sbjct: 61 IDVGDE-HGK--IELINP-VITSMKGKQHELEGCLSVPGMWGYVDRPAKVKVKAQDRYGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I LLA L HE+DHL+GILF D L Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADEL 149 >gi|167957315|ref|ZP_02544389.1| peptide deformylase [candidate division TM7 single-cell isolate TM7c] Length = 211 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIG 53 M K+ ++ P+ LR+ S+ I I ++ LI +M + LAAVQ+ Sbjct: 21 MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 80 Query: 54 VLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L R+V++ + D+ + INP+II + + + EGCLS+ V R + V Sbjct: 81 KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 140 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + ++ + + I A+G LA LQHE+DH NGI+FIDH+ K+D K Sbjct: 141 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHIKN-KKDAFYK 187 >gi|271969762|ref|YP_003343958.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021] gi|270512937|gb|ACZ91215.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021] Length = 174 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 6/152 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVVIDLQ 64 L+ P P+L +R ++ + ++ ++L M + GLAA QIG+ +RL+ +D+ Sbjct: 12 LIAAPHPVLTARARAVDPADPRVVVAAADLLATMRRARHCTGLAAPQIGLDWRLLSVDVS 71 Query: 65 DHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 H ++ +V NP+++ S + +EGCLS+P DV R+ ITVR Sbjct: 72 LHPGARSCAGELVVANPRLVAASR-WEPAREGCLSVPGLTGDVLRATRITVRGERPGTGA 130 Query: 122 QI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 + I AD A C+QH+LDHL+G+LF+D ++R Sbjct: 131 PVTIDADAFEARCIQHQLDHLDGVLFLDRVTR 162 >gi|332227624|ref|XP_003262991.1| PREDICTED: peptide deformylase, mitochondrial-like [Nomascus leucogenys] Length = 240 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++V++L + Sbjct: 72 DPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLVLELTEAL 131 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R+ P VF+NP + + EGC S+ + A V R + + Sbjct: 132 CRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRLQAVQIS 191 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D N + + A G A +QHE+DHL G LFID + Sbjct: 192 GLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 228 >gi|254393357|ref|ZP_05008503.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|294811339|ref|ZP_06769982.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|326439928|ref|ZP_08214662.1| polypeptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|197706990|gb|EDY52802.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|294323938|gb|EFG05581.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064] Length = 186 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 2/148 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL ++ +P+L + + L++++ MY+ +G+GLAA Q+GV R+ V D Sbjct: 14 RPLSLYGNPVLHTPCETVTDFGPALGKLVEDLFATMYARNGVGLAANQMGVGLRVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ +D V EGCLS+P A V+R V D + Sbjct: 74 PDDDEVRHLGHIVNPRLVA-ADGVEVRGPEGCLSLPGLEAPVERYDRAVVEGQDSDGGPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150 + G A CLQHE DHL+G ++ D L Sbjct: 133 RVEGTGFFARCLQHETDHLDGSVYADRL 160 >gi|302558503|ref|ZP_07310845.1| peptide deformylase [Streptomyces griseoflavus Tu4000] gi|302476121|gb|EFL39214.1| peptide deformylase [Streptomyces griseoflavus Tu4000] Length = 216 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + ++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHQECQDVTDFGEELQQLVADMFASQRTAEGVGLAANQIGVDKKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP+++ + EGCLS+P + R + V D Sbjct: 100 DCPDDEGVRHVGVICNPELVELPAEKRRLDDSNEGCLSVPTAYMPLARPDYAEVTGRDEQ 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|116670231|ref|YP_831164.1| peptide deformylase [Arthrobacter sp. FB24] gi|116610340|gb|ABK03064.1| peptide deformylase [Arthrobacter sp. FB24] Length = 197 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 80/152 (52%), Gaps = 13/152 (8%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV---VIDLQ 64 I DP+LR V+ P+ + ++ L+ +M E M DG GLAA Q+GV R+ + ++ Sbjct: 10 IIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFTYRIGGVE 69 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 H INP ++ S+DF + EGCLSIP V+R V +D + Sbjct: 70 GH--------IINP-VLENSEDFQPDEVEGCLSIPGLGFPVRRRRATRVTGVDLHGHPVT 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + +G+LA C QHE DHL+GILF D L R Sbjct: 121 VDGEGMLARCFQHETDHLDGILFTDRLEGEDR 152 >gi|294651129|ref|ZP_06728464.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] gi|292822961|gb|EFF81829.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] Length = 163 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 16/140 (11%) Query: 23 KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP--------- 72 + NS+ ++ L M M +G+G+AA Q+ + R++++ A R NP Sbjct: 28 EFNSEWLLQLASAMHATMLERNGVGIAAPQVYISKRVIIV-----ASRPNPRYPDAPEMD 82 Query: 73 -MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V +NP+I+ FS + +EGCLS+PD R V+R+ I VRY + +G A Sbjct: 83 AVVMVNPEILEFSQQTCLGEEGCLSVPDQRGVVERAQTIKVRYYTLQGEVVETTFEGFPA 142 Query: 132 TCLQHELDHLNGILFIDHLS 151 +QHE+DHL+G+LF++ +S Sbjct: 143 RIVQHEVDHLDGVLFVERMS 162 >gi|167750831|ref|ZP_02422958.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702] gi|167656266|gb|EDS00396.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702] Length = 160 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 80/153 (52%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ + D LR+ + + + + ++D+M E M +G+GLAA QI VL R+VV Sbjct: 1 MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D H K + INP +IT EGCLS+P V R A + V+ D + Sbjct: 61 IDVGDE-HGK--IELINP-VITSMKGKQHELEGCLSLPGMWGYVDRPAKVKVKAQDRYGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I LLA L HE+DHL+GILF D L Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADEL 149 >gi|300934596|ref|ZP_07149852.1| polypeptide deformylase [Corynebacterium resistens DSM 45100] Length = 222 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 28/175 (16%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+VI DP+L ++P+E ++++ LI++M E M G+GLAA Q+GV Sbjct: 1 MTIMPIVIAGDPVLHNPTKPVELQEGKAPSAELTQLINDMYETMDRAHGVGLAANQVGVD 60 Query: 56 YRLVVIDLQD----HAHR---------KNPM---VFINPKIITFSD------DFSVYQEG 93 RL V D R PM INP + T SD D + +EG Sbjct: 61 LRLFVYHCPDIEGADGERLTEEQIEANGGPMRRGCVINPTLET-SDIPETMPDEEIDEEG 119 Query: 94 CLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 CLS+P Y R+ + V +D N Q + G A CLQHE+ HL+G L+ D Sbjct: 120 CLSVPGYSFPTGRADWARVTGLDENGQPITVEGYGFFARCLQHEVGHLDGFLYTD 174 >gi|256379232|ref|YP_003102892.1| peptide deformylase [Actinosynnema mirum DSM 43827] gi|255923535|gb|ACU39046.1| peptide deformylase [Actinosynnema mirum DSM 43827] Length = 181 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + + + ++ L+ ++ + M G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPAVEVTEFDVELRKLVKDLWDTMSDAGGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 A +NP D+ EGCLSIP D R + R + + + Sbjct: 61 YHCDGFAGH-----MVNPTFDVVGDETQDGPEGCLSIPGMSWDCVRHRQVVARGWNMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + LLA C+QHE DHL+G++F+D L R +++ + Sbjct: 116 PVEVEGTDLLARCIQHETDHLDGVVFVDRLDEETRKRAMREIRQ 159 >gi|120597766|ref|YP_962340.1| peptide deformylase [Shewanella sp. W3-18-1] gi|146294101|ref|YP_001184525.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|120557859|gb|ABM23786.1| peptide deformylase [Shewanella sp. W3-18-1] gi|145565791|gb|ABP76726.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|319427442|gb|ADV55516.1| peptide deformylase [Shewanella putrefaciens 200] Length = 181 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 80/149 (53%), Gaps = 5/149 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + ILR+ + + + ++ + +L + M M + G+G+AA Q+ + ++ + Sbjct: 15 PIAQYGEAILRQTAIEVRQFDAKLTHLAEQMSASMMAAKGVGIAAPQVHSPLAMFIMASR 74 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +A + P+V +NP+I+ SD+ + +EGCLS+P+ R + R I VRY + Sbjct: 75 PNARYPDAPHMAPVVVVNPQILNVSDELNAGEEGCLSVPEQRFIIPRHDRIEVRYQNLQG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + Q G +A QHE DHL GI ++ Sbjct: 135 EWQQAVLSGFIARIFQHEFDHLQGITLLE 163 >gi|325963678|ref|YP_004241584.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469765|gb|ADX73450.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] Length = 190 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA Q+GV R+ V Sbjct: 5 PITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFVYKYA 64 Query: 65 DHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + V +NP KI D +EGCLS P + +KR+ + V D Sbjct: 65 NDDGAPPAGVLVNPVLTLSKISGAVPDPDEEEEGCLSFPSGQYPLKRAEWARVEGFDGYG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Q A G A +QHE DHL+G L+++ L Sbjct: 125 QPVRFEATGWFARVMQHEYDHLDGKLYVNRL 155 >gi|237843361|ref|XP_002370978.1| peptide deformylase, putative [Toxoplasma gondii ME49] gi|211968642|gb|EEB03838.1| peptide deformylase, putative [Toxoplasma gondii ME49] gi|221502320|gb|EEE28053.1| peptide deformylase, putative [Toxoplasma gondii VEG] gi|289064341|gb|ADC80546.1| peptide deformylase [Toxoplasma gondii] Length = 353 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 2/152 (1%) Query: 10 PDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHA 67 P +LR + P + + L ++L VMY G+GLAA Q+GV +++V + D Sbjct: 191 PHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIVWNPTGDVR 250 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 VF+NP++++ EGCLS+P A V+R VRY + Sbjct: 251 ESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEGIQREATLS 310 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 GL A +QHE+DHL+GILF+D + R +R T Sbjct: 311 GLEARVVQHEIDHLHGILFVDRVHRGERSAHT 342 >gi|296130000|ref|YP_003637250.1| peptide deformylase [Cellulomonas flavigena DSM 20109] gi|296021815|gb|ADG75051.1| peptide deformylase [Cellulomonas flavigena DSM 20109] Length = 162 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR PI I+ + +L++++LE + GLAA QIGV R Sbjct: 1 MALREIRTVGDPVLRTPCDPITTIDERVRSLVEDLLETVDMDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ D +NP I+ S+D + EGCLS+P R+ + V D + Sbjct: 61 WNIDDEIG-----YVLNPVIVELSEDEYQDGDEGCLSVPGLWFPTHRAWYARVVGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + ++ L+A CLQHE+DHL+G+L++D L R R Sbjct: 116 REVVVEGTELMARCLQHEVDHLDGMLYLDRLERSVR 151 >gi|251772750|gb|EES53312.1| peptide deformylase [Leptospirillum ferrodiazotrophum] Length = 184 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 12/157 (7%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDH 66 +P+LR++S P+ K + +D+M+E M DG+GLAA Q+ V ++V+I+ L D Sbjct: 11 NPVLRKISEPVSKEEIARPEFQRFLDDMIETMKDEDGLGLAAPQVHVSKQVVIIESLDDP 70 Query: 67 AHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 P +V INP S + EGCLS+ + R V RS + + + + Sbjct: 71 RSEDGPPTPLLVLINPVFKYMSKETRTGWEGCLSLDNLRGKVTRSRAVKLEALGRKGETI 130 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 ++ + A LQHE+DHL G LF+D + +DM T Sbjct: 131 VLDWEEFPAVVLQHEIDHLRGHLFVDRM----KDMST 163 >gi|88704771|ref|ZP_01102484.1| Peptide deformylase [Congregibacter litoralis KT71] gi|88701092|gb|EAQ98198.1| Peptide deformylase [Congregibacter litoralis KT71] Length = 169 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 3/146 (2%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PD LR S + + + + ++++ E + + IGL+A Q G+ R++V+ + D Sbjct: 10 PDERLREHSEAVSRFDEALQQQVNDLFETLGHSGAIGLSAPQTGIFKRIIVVHVPDDDF- 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 V+INP+I+ S V +E CLS+P +V R + +R D + + D L Sbjct: 69 -GARVYINPEILKRSKSRYV-EESCLSVPGIEGNVVRCIRVKLRAQDIHGKLCEFDVDDL 126 Query: 130 LATCLQHELDHLNGILFIDHLSRLKR 155 A C+QHE+DHL+GILF D LS K+ Sbjct: 127 HAVCVQHEVDHLDGILFTDRLSWFKK 152 >gi|154509286|ref|ZP_02044928.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC 17982] gi|153798920|gb|EDN81340.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC 17982] Length = 212 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 32/178 (17%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV-----LYRLV 59 P+ I +P+L RV+ P++ I+S++ +L+ +M+E M++ G+GLAA Q+GV ++R Sbjct: 5 PICITGEPVLHRVADPVDSIDSELRDLVADMIETMHAAPGVGLAAPQVGVGAQVFVWRYG 64 Query: 60 VIDLQDHAHR------KNPM---------VFINP------------KIITFSDDFSVYQE 92 D +R + P V +NP I+ D ++ E Sbjct: 65 GAGSFDAQYREVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIALESE 124 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 GCLS+P Y ++R +R D + + A G LA QHE DHL G L++D L Sbjct: 125 GCLSVPGYGYPLRRVLGAVLRGYDVDGNAIEVSARGWLARIFQHEYDHLQGTLYVDRL 182 >gi|225442881|ref|XP_002281834.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743418|emb|CBI36285.3| unnamed protein product [Vitis vinifera] Length = 277 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61 DP+L ++ +E +I SD I +ID+M++ M + G+GLAA QIG+ R++V+ Sbjct: 96 DPVLHESAQEVEPGEIGSDRIQKIIDDMIKAMRTAPGVGLAAPQIGIPLRIIVLEDTKEY 155 Query: 62 ---DLQD--HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D +D A + P +V +NPK+ + + + EGCLS+ +RA V+R + V Sbjct: 156 ISYDRKDVIKAQERRPFDLLVILNPKLRKKGNRTAFFFEGCLSVDGFRAVVERHLQVEVT 215 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + N + + A G A LQHE DHL+G L++D + Sbjct: 216 GLSRNGKPIKVDASGWKARILQHECDHLDGTLYVDKM 252 >gi|55297586|dbj|BAD68932.1| peptide deformylase-like [Oryza sativa Japonica Group] Length = 326 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 38/184 (20%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS------------------------ 41 +V +PDPILR ++ I + ++ +L D M +VMY+ Sbjct: 99 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYNASDSICVTLLNKQIKKGLLSTIAR 158 Query: 42 --------------TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87 TDGIGL+A Q+GV +L+V + +V +NP + S Sbjct: 159 EDIPPIEPLVSCYRTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRL 218 Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 VY+E CLS P A+V R + + D + GL A QHE DHL GILF Sbjct: 219 LVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFF 278 Query: 148 DHLS 151 D +S Sbjct: 279 DRMS 282 >gi|296536912|ref|ZP_06898949.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] gi|296262760|gb|EFH09348.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] Length = 176 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 6/141 (4%) Query: 12 PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 P+L RV+ P+ + + +I LI +M E M G+GLAA Q+ V R+ V + Sbjct: 12 PVLLRVADPVPDPTDPEIRRLIRDMAETMLDAGGLGLAAPQVHVPLRIFVFRQGETV--- 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +NP+I EGCLSIP R +V+R+ I R +D +GLL Sbjct: 69 --AALVNPEIELLGPPDQRGWEGCLSIPGLRGNVERAQRIAFRGLDVEGDSVEGEVEGLL 126 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A +QHE DHLNGIL+ +S Sbjct: 127 ARVMQHEFDHLNGILYPSRMS 147 >gi|154505954|ref|ZP_02042692.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149] gi|153793972|gb|EDN76392.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149] Length = 159 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +P+ K+ LI++ML+ MY G+GLAA Q+GVL ++VV Sbjct: 1 MAIREVRIMGDDILEKQCKPVTKMTMRTKILIEDMLDTMYEKYGVGLAAPQVGVLKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+II S + +EGCLS+P V R ++ VR ++ + Sbjct: 61 IDVGE-----GPIVLINPEIIETSGE-QTGEEGCLSLPGKWGIVTRPNYVKVRALNEEME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA HE+DHL G ++++ + Sbjct: 115 EVELEGEGLLARAFCHEIDHLAGHMYVERVE 145 >gi|18310615|ref|NP_562549.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110800596|ref|YP_696318.1| polypeptide deformylase [Clostridium perfringens ATCC 13124] gi|168207151|ref|ZP_02633156.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|168213602|ref|ZP_02639227.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|169342870|ref|ZP_02863901.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|23396560|sp|Q8XJX0|DEF2_CLOPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|18145296|dbj|BAB81339.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110675243|gb|ABG84230.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|169299127|gb|EDS81199.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|170661437|gb|EDT14120.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|170714896|gb|EDT27078.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] Length = 155 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V L++VS P++ +N ++ LI ++ + + + +GIGLAA QI V R+V Sbjct: 1 MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ D +N V INP++ S + EGCLS + V+R + ++ ++ + Sbjct: 60 INFGDG---ENEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ A LLA C HE+DHL GI+++D + Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149 >gi|226952063|ref|ZP_03822527.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244] gi|226837220|gb|EEH69603.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244] Length = 163 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 16/140 (11%) Query: 23 KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP--------- 72 + NS+ ++ L M M +G+G+AA Q+ + R++++ A R NP Sbjct: 28 EFNSEWLLQLASAMHATMLERNGVGIAAPQVYISKRVIIV-----ASRPNPRYPDAPEMD 82 Query: 73 -MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V +NP+I+ FS + +EGCLS+PD R V+R+ I VRY + +G A Sbjct: 83 AVVMVNPEILEFSQTTCLGEEGCLSVPDQRGFVERAQTIKVRYYTLQGEVVETTFEGFPA 142 Query: 132 TCLQHELDHLNGILFIDHLS 151 +QHE+DHL+G+LF++ +S Sbjct: 143 RIVQHEVDHLDGVLFVERMS 162 >gi|166365029|ref|YP_001657302.1| polypeptide deformylase [Microcystis aeruginosa NIES-843] gi|166087402|dbj|BAG02110.1| polypeptide deformylase [Microcystis aeruginosa NIES-843] Length = 180 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 8/148 (5%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 +PIL++ + I+ + ++D NLID+++ + + G+G+AA Q+ RL ++ + Sbjct: 12 NPILQQKAAAIDNLLDADCQNLIDSLITTVQAAHGVGIAAPQVARSLRLFIVASHPNPRY 71 Query: 70 KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH-QI 123 + P INP+I+ S++ EGCLS+P+ R V R +I V Y D N + + Sbjct: 72 PDAPMMPPTAVINPRILRVSEEMVKGWEGCLSVPNLRGFVPRHQWIEVAYCDRNGREIRQ 131 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 ++ D +A QHE DHL GILF+D L+ Sbjct: 132 VFRD-FVARIFQHEYDHLEGILFLDRLA 158 >gi|119899899|ref|YP_935112.1| peptide deformylase [Azoarcus sp. BH72] gi|119672312|emb|CAL96226.1| probable peptide deformylase [Azoarcus sp. BH72] Length = 177 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R +RP+ +D + ++ +M+E M++ G+GLAA Q+G+ RLV+ + Sbjct: 10 DPRLMRAARPVCAFGTDELRRIVADMVETMHAAGGVGLAAPQVGIDLRLVIFGFERSERY 69 Query: 70 KN--PMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P+ F NP + SD+ EGCLS+P R V R + R D + + Sbjct: 70 PDAPPVPFTVLANPVLTPLSDELEEGWEGCLSVPGLRGWVPRFRHLLYRGADIDGKPLER 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +G A +QHE DHL+GIL+ +S R Sbjct: 130 EVEGFHARVVQHECDHLDGILYPARISDFSR 160 >gi|46446175|ref|YP_007540.1| putative peptide deformylase [Candidatus Protochlamydia amoebophila UWE25] gi|46399816|emb|CAF23265.1| putative Peptide deformylase [Candidatus Protochlamydia amoebophila UWE25] Length = 156 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 9/151 (5%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM-------VFI 76 I+ + LI +M+E M++ GIGLAA Q+ L V + KN + VFI Sbjct: 4 IDDALKQLIYDMVETMHTMKGIGLAAPQVHHSISLFVTCVP--VKNKNGLWESGKDRVFI 61 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP+I++ S++ + EGCLSIP+ +V R A ITV+ +D GL AT H Sbjct: 62 NPQILSMSEETQTFSEGCLSIPNLHMNVTRPAKITVQAVDLEGNLFEEIFTGLQATNFMH 121 Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 E DHLNGIL ID+ S +R + + S +Q Sbjct: 122 EYDHLNGILIIDYYSLEERKSLEQLFSTSIQ 152 >gi|256832092|ref|YP_003160819.1| peptide deformylase [Jonesia denitrificans DSM 20603] gi|256685623|gb|ACV08516.1| peptide deformylase [Jonesia denitrificans DSM 20603] Length = 215 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 15/160 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI DP+LR+ + + + + ++ L+ +M + M ++G+GLAA QIGV R+ V D Sbjct: 4 PIVIDGDPVLRQRAAEVTEFDDALVQLVADMYDTMRVSNGVGLAAPQIGVGQRIFVFDAP 63 Query: 65 DHAHRKNPMVFINPK--IITFSDDFSVYQ------------EGCLSIPDYRADVKRSAFI 110 D ++ V +NP I+ F++ EGCLS P + KR + Sbjct: 64 DEDEQRR-GVVVNPSLMIVQRPPRFALKGEGKRPPKSLTDVEGCLSFPGPDFEAKRHYAV 122 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V D + + +I +G A LQHE DHL+G+L++D L Sbjct: 123 RVTGWDEHGEPVVIDGEGWFARVLQHEYDHLDGLLYVDRL 162 >gi|325068970|ref|ZP_08127643.1| peptide deformylase [Actinomyces oris K20] gi|326773171|ref|ZP_08232454.1| peptide deformylase [Actinomyces viscosus C505] gi|326636401|gb|EGE37304.1| peptide deformylase [Actinomyces viscosus C505] Length = 163 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 6/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DPILR I I+ + L++++LE + GLAA QIG+ R Sbjct: 1 MAYRDIRIIGDPILRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NPKI+ S D++ EGCLS+P +R+ + +D + Sbjct: 61 WNIDGEIG-----YILNPKIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + ++ + L+A C+QHE DHL G L++D L R R K++ Sbjct: 116 KEVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAKAMKEL 158 >gi|149919087|ref|ZP_01907571.1| putative polypeptide deformylase protein [Plesiocystis pacifica SIR-1] gi|149820017|gb|EDM79438.1| putative polypeptide deformylase protein [Plesiocystis pacifica SIR-1] Length = 192 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 8/148 (5%) Query: 12 PILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD--- 65 P+LR+V+R P E +I ID+++ M +G GLAA Q+ ++ +++Q Sbjct: 13 PVLRQVAREVSPEELATPEIQGFIDDLVATMRHANGAGLAANQVFEPIQICALEVQSNPR 72 Query: 66 HAHRKN-PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + ++ N P+ V +NPK+ DD EGCLS+PD R V+R A + V+ +D Sbjct: 73 YPYKPNIPLTVLVNPKLTPLGDDSFANYEGCLSVPDLRGVVRRHARLRVQALDREGNSLD 132 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 G+ A QHE+DHL G LF+D + Sbjct: 133 FETAGVTAGTYQHEVDHLRGKLFLDRVE 160 >gi|218249152|ref|YP_002374523.1| peptide deformylase [Cyanothece sp. PCC 8801] gi|218169630|gb|ACK68367.1| peptide deformylase [Cyanothece sp. PCC 8801] Length = 178 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 6/144 (4%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 +PILR+ ++ I +I + ++ LID ++ G+G+AA Q+ RL ++ + Sbjct: 12 NPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILASHPNPRY 71 Query: 70 KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 N P+ INP+I++ S + EGCLS+P R V R ++ V Y D Q Q Sbjct: 72 PNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDRFGQFQQQ 131 Query: 125 YADGLLATCLQHELDHLNGILFID 148 +A QHELDHLNG++F+D Sbjct: 132 KLTDFVARIFQHELDHLNGLIFLD 155 >gi|168209296|ref|ZP_02634921.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|182626083|ref|ZP_02953844.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] gi|170712476|gb|EDT24658.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|177908604|gb|EDT71125.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] Length = 155 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V L++VS P++ +N ++ LI ++ + + + +GIGLAA QI V R+V Sbjct: 1 MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIKDLKDTLATVEGIGLAAPQIAVNKRVVY 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ D +N V INP++ S + EGCLS + V+R + ++ ++ + Sbjct: 60 INFGDG---ENEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ A LLA C HE+DHL GI+++D + Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149 >gi|237785573|ref|YP_002906278.1| peptide deformylase [Corynebacterium kroppenstedtii DSM 44385] gi|237758485|gb|ACR17735.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385] Length = 178 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 8/158 (5%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 IF DP+L + + + + L+D+M+E M G GLAA Q+GVL R+ V + Sbjct: 8 IFGDPVLTTPAEQVTDFDEPLGILVDDMMETMDHYRGAGLAANQVGVLRRVFVYNC---G 64 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R+ +V NP D+ EGCLS+P A+ +R ++V + AD Sbjct: 65 GRRGHIV--NPVWKHEGDETQYGPEGCLSVPSIHANTRRWMNVSVTGQTVDGDPVSFSAD 122 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+LA C+QHE DHL+G+++ + RL+ ++ + M+++ Sbjct: 123 GILARCIQHETDHLDGVMY---MRRLEPEIRKETMAQI 157 >gi|225022087|ref|ZP_03711279.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii ATCC 33806] gi|305680576|ref|ZP_07403384.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] gi|224945020|gb|EEG26229.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii ATCC 33806] gi|305660107|gb|EFM49606.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] Length = 201 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 83/171 (48%), Gaps = 25/171 (14%) Query: 1 MVKKPLVIFPDPILRR----VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M +P+VI+ P+L + V+ PI+ + LID+M E M G+GLAA QIGV Sbjct: 7 MTVRPIVIYGTPVLHQPTAIVTEPIDTLRE----LIDDMFETMEKAHGVGLAANQIGVGK 62 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIIT-----------FSDDFSVYQEGCLSIPDYRADVK 105 R+ V + D + FINP + T SDD EGCLS+P Sbjct: 63 RIFVYNCPDDEGVIHRGCFINPVLETSDIPEGMPAVDGSDD-----EGCLSLPGLSFPTG 117 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 R+ + V ++ N + G LA C QHE+ HL+G ++ D L R KR Sbjct: 118 RATWAKVTGLNENGEEVSEEGTGFLARCFQHEVGHLDGFVYADVLQGRWKR 168 >gi|302533115|ref|ZP_07285457.1| peptide deformylase [Streptomyces sp. C] gi|302442010|gb|EFL13826.1| peptide deformylase [Streptomyces sp. C] Length = 182 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 72/148 (48%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ + +P+L + ++ LI++M MY+ G+GLAA QIG R+ V D Sbjct: 14 RPMTLLGEPVLHSPCAEVTDFGPELDRLIEDMFATMYAAQGVGLAANQIGTGLRVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP+++ D EGCLS+P A R V + + Sbjct: 74 PDDEDVRHVGHVVNPRLVEADGDEFRGPEGCLSLPGLEAGTVRFDRAVVEGVTSDGAPVR 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + G A CLQHE DHL+G ++ D ++ Sbjct: 134 VEGTGFFARCLQHECDHLDGTVYADRVT 161 >gi|118594792|ref|ZP_01552139.1| peptide deformylase [Methylophilales bacterium HTCC2181] gi|118440570|gb|EAV47197.1| peptide deformylase [Methylophilales bacterium HTCC2181] Length = 171 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 80/152 (52%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K ++ DP+L ++PIE +N+ +N +I++M+E M + DG GLAA QIG+ +LV Sbjct: 1 MAIKDILKMGDPLLLSAAQPIEAVNTPELNQIIEDMIETMKANDGAGLAAPQIGLSIQLV 60 Query: 60 VIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + A V INP+II ++ EGCLS+P R V R I + Sbjct: 61 IFGFDSNERYPDAEEVPFTVLINPEIIPLEEEMEDGWEGCLSVPGLRGVVPRYKSIHYKG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 +D Q DG A +QHE DHL G L+ Sbjct: 121 IDQFGQTIDRKVDGFHARVVQHECDHLIGKLY 152 >gi|224011581|ref|XP_002295565.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209583596|gb|ACI64282.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 192 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 11/166 (6%) Query: 9 FPDPILRRV-SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +P P LRRV + PI + + ML +MY + G+GLAA QIG+ + V + D Sbjct: 18 YPRPALRRVPNTPISQFDDAFQTKAKEMLMIMYESKGVGLAAPQIGLNENVFVYNPSDSK 77 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD-----VKRSAFITVRYMDCNAQHQ 122 + + + NPKI +S++ V QEGCLS+ R+D V RSA+I Y + Q Sbjct: 78 NMER--IVCNPKITKYSEEVIVEQEGCLSM---RSDEVAGQVARSAWIECEYENEEGQKV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A QHE DHL GIL D R+ + ++ L+ L Sbjct: 133 RRRLKDFEARVFQHEYDHLKGILCYDRFPPEDREAAQENINTLLGL 178 >gi|327441112|dbj|BAK17477.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris StLB046] Length = 163 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 88/154 (57%), Gaps = 8/154 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P IL + +R +E I+ +I+ L+D++ + M DG+G+AA QI V R+ + Sbjct: 1 MAIKEVVKNPANILSKKTREVEVIDENIIQLLDDLYDTMVENDGVGIAAPQINVDLRVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++L ++ + INP ++ T ++ V EGCLS PD VKR ++ + D Sbjct: 61 VELG-----EDILEMINPIVLETRGEEEDV--EGCLSFPDLFGMVKRPTYVKIEASDREG 113 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + A+ A C+ HE+DHL+G+LF ++R+ Sbjct: 114 RIYELEAEDFEARCILHEIDHLDGVLFDSKMTRV 147 >gi|332876814|ref|ZP_08444571.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685240|gb|EGJ58080.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 193 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 25/186 (13%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+ + + +L+ ++ + ++ LI NM E M +G GLAA Q+G RL V Sbjct: 1 MKLPIFAYGNNVLKVKAQAVASDFPNLHELIANMWETMEKANGCGLAAPQVGKSLRLFVA 60 Query: 62 DLQ------------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 D Q D R+ FINP+I S++ EGCLS+P Sbjct: 61 DSQLLYEAMDERDKIAYFEKGDTGIRR---AFINPQIKNLSEEQWEEAEGCLSLPFLSGK 117 Query: 104 VKRSAFITVRYMDCNAQHQIIYA--DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 V RS + + Y N Q + I G+ A + HE DHL GIL+ID + L + ++ K Sbjct: 118 VARSWSVELSYQ--NEQFETITETFSGMTARVILHEYDHLEGILYIDRVKPLAKKLMQSK 175 Query: 162 MSKLVQ 167 + KL++ Sbjct: 176 LQKLLK 181 >gi|323489535|ref|ZP_08094762.1| peptide deformylase [Planococcus donghaensis MPA1U2] gi|323396666|gb|EGA89485.1| peptide deformylase [Planococcus donghaensis MPA1U2] Length = 170 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V P+ +L P+ + ++ L+D+M E M +DG+G+AA Q+G R+ + Sbjct: 1 MAIRTVVKHPNKVLETNCEPVTVFDKNLSVLLDDMHETMVESDGVGIAAPQVGEAVRVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++ + P+ +NP+++ F + EGCLS P +V+R I ++ + + Sbjct: 61 VDFRE---GQEPIEMVNPELVLF-EGAETDIEGCLSFPGIFGEVERYDHIKIKAQERDGS 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A+G A + HE+DHL+G+LF +++ Sbjct: 117 WYELEAEGYEARAILHEMDHLDGVLFTSKITK 148 >gi|163941605|ref|YP_001646489.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|229013051|ref|ZP_04170216.1| Peptide deformylase [Bacillus mycoides DSM 2048] gi|229061470|ref|ZP_04198815.1| Peptide deformylase [Bacillus cereus AH603] gi|229134675|ref|ZP_04263484.1| Peptide deformylase [Bacillus cereus BDRD-ST196] gi|229168607|ref|ZP_04296330.1| Peptide deformylase [Bacillus cereus AH621] gi|163863802|gb|ABY44861.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|228615013|gb|EEK72115.1| Peptide deformylase [Bacillus cereus AH621] gi|228648721|gb|EEL04747.1| Peptide deformylase [Bacillus cereus BDRD-ST196] gi|228717893|gb|EEL69541.1| Peptide deformylase [Bacillus cereus AH603] gi|228748305|gb|EEL98165.1| Peptide deformylase [Bacillus mycoides DSM 2048] Length = 156 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPVILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKIFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 AD LA +QHE+DHL+G+LF + R Sbjct: 122 ADDFLARAIQHEIDHLHGVLFTSKVKR 148 >gi|288958776|ref|YP_003449117.1| peptide deformylase 2 [Azospirillum sp. B510] gi|288911084|dbj|BAI72573.1| peptide deformylase 2 [Azospirillum sp. B510] Length = 190 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 4/162 (2%) Query: 5 PLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+ +PILR++++PI + + I L +M+ M G+GLAA Q+ R++V + Sbjct: 5 PIARMGNPILRQIAQPIADPTDPAIARLAADMIATMLDAPGVGLAAPQVSESCRIIVFRV 64 Query: 64 ---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + V +NP I +DD ++ EGCLSIP R V R I R + Sbjct: 65 PADRGEGEEVANTVLVNPVIEPLTDDMALGWEGCLSIPGLRGLVPRHTRIRYRGHGLDGA 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 A G A +QHE+DHL+G+L++D + L+ + T++M Sbjct: 125 RIEREASGFHARVVQHEVDHLDGVLYLDRMDDLRLLVCTEEM 166 >gi|239939651|ref|ZP_04691588.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|239986135|ref|ZP_04706799.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 11379] Length = 181 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 2/149 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + + DP+L R + + LI++M MY+ G+GLAA QIGV ++ V D Sbjct: 14 REMSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ +D +V EGCLS+P A +R V + + Sbjct: 74 PDDDDVRHLGHVVNPELVE-ADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 I G A CLQHE DHL G ++ D L+ Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYPDRLT 161 >gi|296141405|ref|YP_003648648.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] gi|296029539|gb|ADG80309.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] Length = 198 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 85/176 (48%), Gaps = 23/176 (13%) Query: 5 PLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+VI DP+L + P+E + +++I+ L+D+MLE M +G+GLA Q+G RL Sbjct: 5 PIVIVGDPVLHTPTTPVELDADGRPDAEIVALLDDMLETMDRANGVGLAGNQVGRDLRLF 64 Query: 60 VIDLQDH-AHRKNPMVFINPKIITFS---------DDFSVYQEGCLSIPDYRADVKRSAF 109 V D D H + INP + T DD+ EGCLS+P R+ + Sbjct: 65 VYDCPDEETHERRRGEVINPVLTTSEIPETMPDPDDDW----EGCLSVPGESFPTGRADW 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMITKK 161 V D N + I G A LQHE HL+G L+ D L +R + I K+ Sbjct: 121 AKVVGTDRNGEKVEIEGTGFFARMLQHETGHLDGFLYTDVLVGRYARQAKKFIKKQ 176 >gi|257062237|ref|YP_003140125.1| peptide deformylase [Cyanothece sp. PCC 8802] gi|256592403|gb|ACV03290.1| peptide deformylase [Cyanothece sp. PCC 8802] Length = 178 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 6/147 (4%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 +PILR+ ++ I +I + ++ LID ++ G+G+AA Q+ RL ++ + Sbjct: 12 NPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILASHPNPRY 71 Query: 70 KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 N P+ INP+I++ S + EGCLS+P R V R ++ V Y D Q Q Sbjct: 72 PNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDRFGQFQQQ 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 +A QHELDHLNG++F+D + Sbjct: 132 KLTDFVARIFQHELDHLNGLVFLDRVE 158 >gi|182440102|ref|YP_001827821.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780771|ref|ZP_08240036.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1] gi|178468618|dbj|BAG23138.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661104|gb|EGE45950.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1] Length = 181 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 2/151 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + + DP+L R + + L+++M MY+ G+GLAA QIGV ++ V D Sbjct: 14 REMSLLGDPLLHRPCEDVTDFGPPLAKLVEDMFATMYAAQGVGLAANQIGVPLKVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ +D +V EGCLS+P A R V + + Sbjct: 74 PDDDDVRHLGHVVNPELVE-ADGLTVRGPEGCLSLPGLEAGTDRFDHAVVEGLTMTGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I G A CLQHE DHL G ++ D L+ L Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYTDRLTGL 163 >gi|134102367|ref|YP_001108028.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|291009319|ref|ZP_06567292.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|133914990|emb|CAM05103.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] Length = 166 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 5/143 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 F DP+LR + P+ + + +++ ++L+ + + GLAA QIGV R ++ Sbjct: 9 FGDPVLRTPAEPVTVFDDRLRSVVADLLDTVDAPGHAGLAAPQIGVGIRAFSYNVDGEIG 68 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +NP+++ S++ EGCLS+P+ D R+ VR +D + + + G Sbjct: 69 -----YVVNPEVVELSEEQQEGPEGCLSVPELWFDTPRARHAVVRGVDADNEPVTVSGSG 123 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 L+A CLQHE DHL+G++++ L+ Sbjct: 124 LMARCLQHETDHLDGMIYVQRLA 146 >gi|312141214|ref|YP_004008550.1| peptide deformylase def [Rhodococcus equi 103S] gi|325673956|ref|ZP_08153646.1| peptide deformylase [Rhodococcus equi ATCC 33707] gi|311890553|emb|CBH49871.1| peptide deformylase Def [Rhodococcus equi 103S] gi|325555221|gb|EGD24893.1| peptide deformylase [Rhodococcus equi ATCC 33707] Length = 205 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 20/168 (11%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I DP+L ++P+ + +++ +LI +M E M + +G+GLAA Q+GV RL V D Sbjct: 5 PIRIVGDPVLHEPTKPVTESPAELADLIRDMYETMDAANGVGLAANQVGVAKRLFVYDCP 64 Query: 65 DHAHRK--------------NPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 D+A K NP++ + P+ + DD EGCLS+P + R+ Sbjct: 65 DYAAGKDASGKPVMRRGCVVNPVLETSEIPETMPDEDDDV---EGCLSVPGEQFPTGRAD 121 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 + V D + I G A LQHE HL+G L++D L R KR Sbjct: 122 WAKVTGTDEHGNPVEIEGHGFFARMLQHETGHLDGFLYVDVLIGRNKR 169 >gi|254384297|ref|ZP_04999640.1| peptide deformylase 2 [Streptomyces sp. Mg1] gi|194343185|gb|EDX24151.1| peptide deformylase 2 [Streptomyces sp. Mg1] Length = 185 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 73/148 (49%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + + DP+L + + + LI++M MY+ +G+GLAA QIGV R+ V D Sbjct: 14 RTMSLLGDPVLHSACAEVTEFGPVLDRLIEDMFATMYAAEGVGLAANQIGVGQRVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D ++ +NP+++ D EGCLS+P A R V + + Sbjct: 74 PDDDDVRHVGHIVNPRLVAADGDEIRGPEGCLSLPGLEAGTDRFDRAVVEGVTSDGAPVR 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + G A CLQHE DHL+G ++ D ++ Sbjct: 134 VEGTGFFARCLQHECDHLDGTVYADRVT 161 >gi|18043802|gb|AAH19912.1| Peptide deformylase (mitochondrial) [Homo sapiens] Length = 243 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L + Sbjct: 72 DPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEAL 131 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R+ P VF+NP + + EGC S+ + A V R + + Sbjct: 132 CRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 191 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D N + + A G A +QHE+DHL G LFID + Sbjct: 192 GLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 228 >gi|323456767|gb|EGB12633.1| hypothetical protein AURANDRAFT_14540 [Aureococcus anophagefferens] Length = 181 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 3/161 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHA 67 +P P+LR I + D M+ +MY DG+GLAA Q+G+ R V + D Sbjct: 18 YPMPVLRGPCADIVDFDDDFKQTCKEMMSIMYQADGVGLAATQVGLWKRFFVYNPTGDRL 77 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLS--IPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + +NP+I + + + +EGCLS + ++RS I V Y+D + + Sbjct: 78 MKPYERIVVNPRITKYGEATADEEEGCLSSRSENCAGVIRRSLDIWVEYVDERNKKRTKK 137 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 G A QHE DH+ G+L ID LS R + ++ ++V Sbjct: 138 LSGFEARVFQHEYDHIEGVLHIDRLSPEDRAKVEPELERMV 178 >gi|226304981|ref|YP_002764939.1| peptide deformylase [Rhodococcus erythropolis PR4] gi|226184096|dbj|BAH32200.1| peptide deformylase [Rhodococcus erythropolis PR4] Length = 199 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 15/157 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ I DP+L + + P+ + ++I LI +M E M + +G+GLAA Q+GV R+ V D Sbjct: 5 PIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVSLRVFVYDCP 64 Query: 64 -QDHAHRKNPMVFINPKIITF---------SDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D + + V +NP + T +DF EGCLS+P + R+ + V Sbjct: 65 GDDRSSERRRGVVVNPVLETSEIPQTMPDPEEDF----EGCLSVPGEQFPTGRADWAKVT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D + + G A LQHE HL+G L+ D L Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVL 157 >gi|11641243|ref|NP_071736.1| peptide deformylase, mitochondrial precursor [Homo sapiens] gi|17433054|sp|Q9HBH1|DEFM_HUMAN RecName: Full=Peptide deformylase, mitochondrial; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|11320944|gb|AAG33968.1|AF239156_1 peptide deformylase-like protein [Homo sapiens] gi|13195254|gb|AAK15624.1|AF322879_1 polypeptide deformylase-like protein [Homo sapiens] gi|38230771|gb|AAR14341.1| peptide deformylase [synthetic construct] gi|119603671|gb|EAW83265.1| hCG2027080, isoform CRA_a [Homo sapiens] gi|119603674|gb|EAW83268.1| hCG2027080, isoform CRA_a [Homo sapiens] Length = 243 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L + Sbjct: 72 DPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEAL 131 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R+ P VF+NP + + EGC S+ + A V R + + Sbjct: 132 CRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 191 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D N + + A G A +QHE+DHL G LFID + Sbjct: 192 GLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 228 >gi|318061364|ref|ZP_07980085.1| peptide deformylase [Streptomyces sp. SA3_actG] gi|318077742|ref|ZP_07985074.1| peptide deformylase [Streptomyces sp. SA3_actF] Length = 242 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 ++ L+ +M MY +G GLAA Q+ V RL V D D ++ +NP I + Sbjct: 76 TPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEGARHVGHVLNPVIDEAA 135 Query: 85 DDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 ++ EGCLS+P + ++ R+ VR +D + + I G A CLQHE DHLN Sbjct: 136 SGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEGTGYFARCLQHETDHLN 195 Query: 143 GILFIDHLSRLKRDMITKKMSK 164 GIL++D L R R + M++ Sbjct: 196 GILYVDRLGRRARRTVLTDMAE 217 >gi|288817783|ref|YP_003432130.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|288787182|dbj|BAI68929.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|308751381|gb|ADO44864.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] Length = 168 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 7/148 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHA 67 +PD L+ S+ + +++++ M S+ G +G+AA Q+ V R++V+D Sbjct: 9 YPDERLKIPSKEVSDFGKFFSEFLESLVFTMRSSPGCVGIAAPQVNVHKRVIVVDTSISK 68 Query: 68 HRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 H++N + V +NP I+ + V +EGCLS+PDY +VKR +I V +D Sbjct: 69 HKENKLSHGLLVLVNPIILQREGEI-VIREGCLSVPDYTGNVKRHYWIKVSALDVKGNPV 127 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150 +G A +QHE+DHL+G +F++ L Sbjct: 128 EFETEGFEAVVIQHEIDHLDGKVFLERL 155 >gi|291443077|ref|ZP_06582467.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291346024|gb|EFE72928.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] Length = 205 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + + DP+L R + + LI++M MY+ G+GLAA QIGV ++ V D D Sbjct: 40 MSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYDCPD 99 Query: 66 HAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ +NP+++ +D +V EGCLS+P A +R V + + I Sbjct: 100 DDDVRHLGHVVNPELVE-ADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPVRI 158 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 G A CLQHE DHL G ++ D L+ Sbjct: 159 AGTGWFARCLQHECDHLEGTVYPDRLT 185 >gi|221481821|gb|EEE20191.1| peptide deformylase, putative [Toxoplasma gondii GT1] Length = 353 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 2/145 (1%) Query: 10 PDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHA 67 P +LR + P + + L ++L VMY G+GLAA Q+GV +++V + D Sbjct: 191 PHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIVWNPTGDVR 250 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 VF+NP++++ EGCLS+P A V+R VRY + + Sbjct: 251 ESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEGIQREVTLS 310 Query: 128 GLLATCLQHELDHLNGILFIDHLSR 152 GL A +QHE+DHL+GILF+D + R Sbjct: 311 GLEARVVQHEIDHLHGILFVDRVHR 335 >gi|332518959|ref|ZP_08395426.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4] gi|332044807|gb|EGI81000.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4] Length = 215 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 14/149 (9%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD------GIGLAAVQIGVLYRLVVIDLQDH 66 +LR S ++ ++D+ +++ ++ +Y+T G+G+AA Q+GVL VI +Q Sbjct: 65 LLRSKSAYVKPDSTDV--VLNTFIKRLYATVRDSISLGVGIAAPQVGVLKN--VIWVQRF 120 Query: 67 AHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADV--KRSAFITVRYMDCNAQHQI 123 + P V++NPKII++S + +EGCLSIP+ R DV RS + + Y N +H I Sbjct: 121 DKDEFPFEVYLNPKIISYSQEKQTRKEGCLSIPN-RTDVLNNRSKIVKIEYDKINGEHII 179 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152 A QHE+DHLNGIL++DHL + Sbjct: 180 ETITDFTAIIFQHEIDHLNGILYLDHLEK 208 >gi|229493717|ref|ZP_04387501.1| peptide deformylase [Rhodococcus erythropolis SK121] gi|229319386|gb|EEN85223.1| peptide deformylase [Rhodococcus erythropolis SK121] Length = 199 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 15/157 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ I DP+L + + P+ + ++I LI +M E M + +G+GLAA Q+GV R+ V D Sbjct: 5 PIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVPLRVFVYDCP 64 Query: 64 -QDHAHRKNPMVFINPKIITFS---------DDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D + + V +NP + T +DF EGCLS+P + R+ + V Sbjct: 65 GDDRSSERRRGVVVNPVLETSEIPQTMPDPDEDF----EGCLSVPGEQFPTGRADWAKVT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D + + G A LQHE HL+G L+ D L Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVL 157 >gi|330470474|ref|YP_004408217.1| formylmethionine deformylase [Verrucosispora maris AB-18-032] gi|328813445|gb|AEB47617.1| formylmethionine deformylase [Verrucosispora maris AB-18-032] Length = 195 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 6/152 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDL 63 P+V P P+L R ++ + + L +++ M + G +GLAA Q+GV ++ +D+ Sbjct: 33 PVVSAPHPVLSRAGAQVDPTAEETVRLAADLVATMRVSPGCVGLAAPQVGVGAQVFAVDV 92 Query: 64 QDHAHR---KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 HA V N +++ + + +EGC+S+PD DVKR++ + V + Sbjct: 93 TGHAKAVTVHGTFVLCNARVVE-ATRWKAGREGCMSVPDLTGDVKRASRLVVEGALPGSG 151 Query: 121 HQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 Q+ + DG A LQHE+DH G+LF+D ++ Sbjct: 152 EQVRLVTDGFEARALQHEIDHCAGLLFLDRVA 183 >gi|162148854|ref|YP_001603315.1| peptide deformylase 2 [Gluconacetobacter diazotrophicus PAl 5] gi|209545397|ref|YP_002277626.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|161787431|emb|CAP57026.1| putative peptide deformylase 2 [Gluconacetobacter diazotrophicus PAl 5] gi|209533074|gb|ACI53011.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] Length = 176 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 70/140 (50%), Gaps = 6/140 (4%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--IDLQDHAHRK 70 +LRR + DI LID+M+E M G GLAA Q+ V RL V + + A Sbjct: 14 LLRRADEVADPTAPDIARLIDDMIETMEDARGAGLAAPQVHVSLRLFVYRVPAERSAGGD 73 Query: 71 NP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 +P V INP + D+ ++ EGCLSIP R V R I +D Q A Sbjct: 74 DPPRETSVLINPVLSLVDDEMALRPEGCLSIPGLRGMVPRHVRIAYSGLDRAGQAVQGVA 133 Query: 127 DGLLATCLQHELDHLNGILF 146 G LA LQHE DHL+GIL+ Sbjct: 134 SGFLANVLQHEYDHLDGILY 153 >gi|293189708|ref|ZP_06608424.1| peptide deformylase [Actinomyces odontolyticus F0309] gi|292821298|gb|EFF80241.1| peptide deformylase [Actinomyces odontolyticus F0309] Length = 212 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 32/178 (17%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV-----LYRLV 59 P+ I +P+L R + PI+ +S++ +L+ +M+E M++ G+GLAA Q+GV ++R Sbjct: 5 PICITGEPVLHRAAAPIDSFDSELRDLVADMIETMHAAPGVGLAAPQVGVGSQVFVWRYG 64 Query: 60 VIDLQDHAHR------KNPM---------VFINP------------KIITFSDDFSVYQE 92 D +R + P V +NP I+ D ++ E Sbjct: 65 GAGSFDTQYRDVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIALESE 124 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 GCLS+P Y ++R+ +R D + + A G LA QHE DHL G L++D L Sbjct: 125 GCLSVPGYGYPLRRALGAILRGYDVDGNAIEVRARGWLARIFQHEYDHLQGTLYVDRL 182 >gi|333027512|ref|ZP_08455576.1| putative peptide deformylase [Streptomyces sp. Tu6071] gi|332747364|gb|EGJ77805.1| putative peptide deformylase [Streptomyces sp. Tu6071] Length = 213 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 2/154 (1%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 + RR + ++ L+ +M MY +G GLAA Q+ V RL V D D ++ Sbjct: 35 LARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEGARHV 94 Query: 73 MVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +NP I + ++ EGCLS+P + ++ R+ VR +D + + I G Sbjct: 95 GHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEGTGYF 154 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A CLQHE DHLNGIL++D L+R R + M++ Sbjct: 155 ARCLQHETDHLNGILYVDRLARRARRTVLTDMAE 188 >gi|283457827|ref|YP_003362425.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] gi|283133840|dbj|BAI64605.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] Length = 214 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 5/152 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR V PI + D+ LID+MLE MY G+GLA Q+G+ ++ D Sbjct: 27 DPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFTFGGIDDRE-- 84 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 INP ++ ++ EGCLS+P ++ R + V +D + + ++ +GL Sbjct: 85 --GYIINP-VLEVGEEDQEGGEGCLSVPGQKSATPRKNWARVTGVDRHGEPLVLEGEGLF 141 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 A LQHE DHL+G LFID L R + + + Sbjct: 142 ARMLQHETDHLHGKLFIDRLVGEDRQRVMRAL 173 >gi|111222219|ref|YP_713013.1| peptide deformylase 2 [Frankia alni ACN14a] gi|111149751|emb|CAJ61443.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [Frankia alni ACN14a] Length = 190 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 5/165 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 P+ DP+LR + + ++ + L+ +M++ MY G+GLAA QIGV R+ V D+ Sbjct: 3 PIRTVGDPVLRTPTALVTTFDAALARLVHDMIDTMYDAPGVGLAAPQIGVGLRVFVFDVG 62 Query: 64 ---QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D + P V +NP + +D + QEGCLS+P R+ +VR +D Sbjct: 63 YDPRDVTVPRVPRVVVNPVLELAADGEQQEGQEGCLSVPGLHFSTTRALRASVRGVDVTG 122 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +GLLA C QHE+DHL+G L++D L+ +R + + + Sbjct: 123 AAVEYAGEGLLARCFQHEVDHLDGTLYLDRLTGEERRAAVQALRE 167 >gi|317106741|dbj|BAJ53237.1| JHL06P13.18 [Jatropha curcas] Length = 274 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+L +R + E+I S+ I +ID+M++ M G+GLAA QIGV R++V++ Sbjct: 93 DPVLHEPAREVDPEEIGSERIQKIIDDMIKAMRMAPGVGLAAPQIGVPLRIIVLEDTKEY 152 Query: 63 ------LQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P +V +NPK+ S+ + + EGCLS+ +RA V+R + V Sbjct: 153 IRYAPKEETKAQDRRPFDLLVILNPKLEKKSNRTAFFFEGCLSVDGFRAVVERYLDVEVT 212 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + Q + A G A LQHE DHL+G L++D + Sbjct: 213 GLSRYGQPIKVNASGWQARILQHECDHLDGTLYVDKM 249 >gi|302518710|ref|ZP_07271052.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|302427605|gb|EFK99420.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 213 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 2/154 (1%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 + RR + ++ L+ +M MY +G GLAA Q+ V RL V D D ++ Sbjct: 35 LARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEGARHV 94 Query: 73 MVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +NP I + ++ EGCLS+P + ++ R+ VR +D + + I G Sbjct: 95 GHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEGTGYF 154 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A CLQHE DHLNGIL++D L+R R + M++ Sbjct: 155 ARCLQHETDHLNGILYVDRLARRARRTVLTDMAE 188 >gi|302553425|ref|ZP_07305767.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302471043|gb|EFL34136.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 208 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 3/154 (1%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +L + R + + D+ LID+M MY DG GLAA Q+GV RL V D D ++ Sbjct: 36 VLHKPCRDVTEFGPDLAALIDDMFLTMYIADGAGLAANQVGVDLRLFVYDCPDDDGVRHV 95 Query: 73 MVFINPKIITFSDDFSVY---QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 +NP + EGCLS+P +V R VR D + + +I G Sbjct: 96 GHVVNPVLEPLDASHRRLLDDSEGCLSVPGAVMNVPRPDRAVVRGYDRDGEPLVIEGTGY 155 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 A CL HE DH+NG +++D LS R ++M+ Sbjct: 156 FARCLAHETDHVNGQVYLDRLSGRDRKEALRQMA 189 >gi|320533868|ref|ZP_08034450.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337] gi|320133894|gb|EFW26260.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337] Length = 175 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 6/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+LR I I+ + L++++LE + GLAA QIG+ R Sbjct: 13 MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NP+I+ S D++ EGCLS+P +R+ + +D + Sbjct: 73 WNIDGEIG-----YILNPRIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDG 127 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + ++ + L+A C+QHE DHL G L++D L R R K++ Sbjct: 128 REVVVEGEELMARCIQHECDHLEGRLYLDRLDRKNRAKAMKEL 170 >gi|294786951|ref|ZP_06752205.1| peptide deformylase [Parascardovia denticolens F0305] gi|294485784|gb|EFG33418.1| peptide deformylase [Parascardovia denticolens F0305] Length = 163 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR V PI I + NL+ ++L+ + GL+A QIGV R Sbjct: 1 MTIRDIRIVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NPKI+ S + EGCLS+P +R+ + V +D + + Sbjct: 61 YNIDGKVG-----YVLNPKIVARSGE-QYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ G++ LQHE DHL+G +++D L + +R + M + Sbjct: 115 KIVLEGKGIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRR 158 >gi|226438315|pdb|3G5K|A Chain A, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438316|pdb|3G5K|B Chain B, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438317|pdb|3G5K|C Chain C, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438318|pdb|3G5K|D Chain D, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438319|pdb|3G5P|A Chain A, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438320|pdb|3G5P|B Chain B, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438321|pdb|3G5P|C Chain C, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438322|pdb|3G5P|D Chain D, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target Length = 183 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L + Sbjct: 12 DPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEAL 71 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R+ P VF+NP + + EGC S+ + A V R + + Sbjct: 72 CRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D N + + A G A +QHE+DHL G LFID + Sbjct: 132 GLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 168 >gi|21222943|ref|NP_628722.1| polypetide deformylase [Streptomyces coelicolor A3(2)] gi|256785943|ref|ZP_05524374.1| polypetide deformylase [Streptomyces lividans TK24] gi|289769835|ref|ZP_06529213.1| polypeptide deformylase [Streptomyces lividans TK24] gi|8134401|sp|Q9XAQ2|DEF3_STRCO RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName: Full=Polypeptide deformylase 3 gi|5042279|emb|CAB44533.1| putative polypetide deformylase [Streptomyces coelicolor A3(2)] gi|289700034|gb|EFD67463.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 208 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH------ 66 +L R R + + D+ LID+M MY +G GLAA Q+GV RL V D D Sbjct: 36 VLHRPCRDVTEFGPDLAALIDDMFRTMYVAEGAGLAANQVGVDLRLFVYDCPDDEGVRHV 95 Query: 67 AHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H NP++ ++P D+ EGCLS+P V R VR +D + ++ Sbjct: 96 GHLVNPVLDALDPAARRLLDE----GEGCLSVPGAVMAVPRPDRAVVRGLDKDGVPLLVE 151 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 G A CL HE DH+NG +++D LS +R ++ + Sbjct: 152 GTGYFARCLAHETDHVNGHVYLDRLSGRERKAALRQSA 189 >gi|184200810|ref|YP_001855017.1| peptide deformylase [Kocuria rhizophila DC2201] gi|183581040|dbj|BAG29511.1| peptide deformylase [Kocuria rhizophila DC2201] Length = 249 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 8/141 (5%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAHR 69 DP+LR ++ + + + + L+ +M+E MY+ G+GLAA Q+GV ++ ++ D H Sbjct: 11 DPVLRTPAQEVPQFDESLRTLVRDMVETMYAVGGVGLAAPQVGVGLQIFTWGIEGDEGH- 69 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 +NP++ + + EGCLS+P + R T+ +D + + A GL Sbjct: 70 -----VVNPRL-SVGHEPQDGGEGCLSVPGLSYETPRMDSATLTGVDMHGRPVHRDATGL 123 Query: 130 LATCLQHELDHLNGILFIDHL 150 LA C QHE DHL G L++D L Sbjct: 124 LARCFQHETDHLRGTLYVDRL 144 >gi|255325949|ref|ZP_05367039.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] gi|255296964|gb|EET76291.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] Length = 201 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 5/152 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+LR V PI + D+ LID+MLE MY G+GLA Q+G+ ++ D Sbjct: 11 DPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFTFGGIDDRE-- 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 INP ++ ++ EGCLS+P ++ R + V +D + ++ +GL Sbjct: 69 --GYIINP-VLEVGEEDQEGGEGCLSVPGQKSATPRKNWARVTGVDRRGEPLVLEGEGLF 125 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 A LQHE DHL+G LFID L R + + + Sbjct: 126 ARMLQHETDHLHGKLFIDRLVGEDRQRVMRAL 157 >gi|308802341|ref|XP_003078484.1| peptide deformylase (ISS) [Ostreococcus tauri] gi|116056936|emb|CAL53225.1| peptide deformylase (ISS) [Ostreococcus tauri] Length = 175 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 2/104 (1%) Query: 4 KPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +PL I +P P LR + PIE ++++ L M ++MY T G GLAA Q+GV YR++V Sbjct: 67 EPLAIAKYPAPCLRAKNAPIETFDANLEQLSKAMFKIMYETVGCGLAAPQVGVNYRMMVY 126 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 + + +V NPKI+ +S + ++EGCLS P ADV+ Sbjct: 127 NEAGEPGKGREVVLCNPKIVKYSKEKDFFEEGCLSFPKMYADVE 170 >gi|315226589|ref|ZP_07868377.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105] gi|315120721|gb|EFT83853.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105] Length = 176 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 6/157 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 I PDP+LR V PI I + NL+ ++L+ + GL+A QIGV R ++ Sbjct: 21 IVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFSYNIDGKV 80 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 +NPKI+ S + EGCLS+P +R+ + V +D + + ++ Sbjct: 81 G-----YVLNPKIVARSGE-QYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGKKIVLEGK 134 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G++ LQHE DHL+G +++D L + +R + M + Sbjct: 135 GIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRR 171 >gi|302540350|ref|ZP_07292692.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302457968|gb|EFL21061.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 185 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 2/144 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +PL + D LR + ++ + L++++ MY+ G+GLAA QIGV R+ V D Sbjct: 17 RPLRLLGDQALRAPCEEVGDFDAALARLVEDLFATMYAAGGVGLAANQIGVGLRVFVYDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D R++ +NP++ +D +V EGCLS+P + R V + + Sbjct: 77 PDDEDRRHLGHVVNPRLAE-ADGVTVRGTEGCLSLPGIESGTPRFDRAVVEGVTATGEPV 135 Query: 123 IIYADGLLATCLQHELDHLNGILF 146 + G A CLQHE DHL+G LF Sbjct: 136 RVEGSGFFARCLQHECDHLDGGLF 159 >gi|317056476|ref|YP_004104943.1| peptide deformylase [Ruminococcus albus 7] gi|315448745|gb|ADU22309.1| peptide deformylase [Ruminococcus albus 7] Length = 155 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 4/138 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D L +V RP+EK + + +D+M E + +G+GLAA Q+ +L R +ID+ D Sbjct: 11 DETLHKVCRPVEKFDEKLWTWLDDMKETLAQANGVGLAAPQVAILRRFCIIDVGD----G 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 N INP+I S++ EGCLS P V R + + D N + + L Sbjct: 67 NVYELINPEITWKSEETQRVLEGCLSCPGQWGYVTRPMSVKFKAQDRNGEWYEMEVSELF 126 Query: 131 ATCLQHELDHLNGILFID 148 A + HE HL+G LF + Sbjct: 127 AQAVCHETAHLDGHLFTE 144 >gi|297844442|ref|XP_002890102.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp. lyrata] gi|297335944|gb|EFH66361.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp. lyrata] Length = 270 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 17/162 (10%) Query: 6 LVIFPDPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+L +R + E+I S+ I +ID+M++VM G+GLAA QIGV R++V++ Sbjct: 84 IVAAGDPVLHEKAREVDPEEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLE 143 Query: 63 --------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 L + MV +NP + S+ +++ EGCLS+ +RA V+R Sbjct: 144 DTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVNGFRAAVERYL 203 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V D + + A G A LQHE DHL+G L++D + Sbjct: 204 EVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKM 245 >gi|302525482|ref|ZP_07277824.1| peptide deformylase [Streptomyces sp. AA4] gi|302434377|gb|EFL06193.1| peptide deformylase [Streptomyces sp. AA4] Length = 166 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L F DP+L+ V P+ +S I L+ ++L+ + GLAA QIGV R+ Sbjct: 1 MAMRELRYFGDPVLKSVCDPVTTFDSKIEALVKDLLDSVQPEGRAGLAAPQIGVGLRVFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ INP+I+ S++ EGCLS+P+ R+ VR +D + Sbjct: 61 YDVGGLTG-----YVINPEIVHLSEETHEIGEGCLSVPELWFPTVRAKHAVVRGVDLRNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +LA CLQHE DHL+G L++D L+ Sbjct: 116 PIEVEGVDVLAQCLQHETDHLDGKLYLDRLT 146 >gi|169631265|ref|YP_001704914.1| peptide deformylase [Mycobacterium abscessus ATCC 19977] gi|238688918|sp|B1MIN9|DEF_MYCA9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169243232|emb|CAM64260.1| Peptide deformylase [Mycobacterium abscessus] Length = 197 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 5 PLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+ I DP+L ++P+ + D+ LI NM E M + +G+GLAA QIGV RL Sbjct: 5 PIRIVGDPVLHTPTQPVPVGPDGSLPDDLPELIANMYETMDAANGVGLAANQIGVPLRLF 64 Query: 60 VIDLQD--HAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITV 112 V D + ++ V INP + T D +EGCLS+P R+ + V Sbjct: 65 VYDCAETRGGGTRHRGVVINPVLETSEIPETMPDPDDDEEGCLSVPGESFPTGRAGWARV 124 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D + + + + L A LQHE HL+G L+ID L Sbjct: 125 TGLDADGKEVTLEGNDLFARMLQHETGHLDGFLYIDKL 162 >gi|221120519|ref|XP_002163626.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 196 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 21/159 (13%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 DP+LR+V+R P+E IN+ D +LI M+ +M S G G+AA Q+GV +++ I+ +H Sbjct: 28 DPVLRKVAREVPLEYINTQDFKDLITKMILIMRSNKGQGIAAPQVGVDLQVIAIEFTEHD 87 Query: 67 ------AHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 + KN + +FINPK+ + + + ++EGCLSI V+R Sbjct: 88 LEMATKQYGKNEVEKRQMRTFPLHIFINPKLKIINYETTRFEEGCLSILGTVGVVQRYRE 147 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + + +++ + ++ DG LA +QHE+ HL G L +D Sbjct: 148 VQLEFVNEKGVNVLMNFDGWLARMVQHEMHHLKGFLIVD 186 >gi|297626643|ref|YP_003688406.1| polypeptide deformylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922408|emb|CBL56980.1| Polypeptide deformylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 206 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 5/160 (3%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 I+R +RP+ + + LI +M + M + DG+GLAA Q+ L V + D + Sbjct: 23 IMRSQTRPVTTFDDTLAQLIADMFKTMAAADGVGLAAPQVDSDLALFVFNCPDIHDKLVY 82 Query: 73 MVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V NP ++T + + QEGCLS P + R F D + G Sbjct: 83 GVMCNP-VVTLPEGKDRHLVSAQEGCLSWPGAYQSLARPDFAVCEGQDETGAPVRVEGTG 141 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LLA CLQHE DHL+G +F D LS+ R + ++ +L L Sbjct: 142 LLARCLQHETDHLHGTVFGDRLSKRARRRLDQEKEELAPL 181 >gi|311104085|ref|YP_003976938.1| peptide deformylase 1 [Achromobacter xylosoxidans A8] gi|310758774|gb|ADP14223.1| peptide deformylase 1 [Achromobacter xylosoxidans A8] Length = 177 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 10/158 (6%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68 DP L RV+ P+E+ ++ ++ LID+M E M + G+GLAA QIGV +LV+ ++ + Sbjct: 10 DPRLLRVAAPVERFDTPELHALIDDMFETMAAAQGVGLAAPQIGVDLQLVIFGFDRNERY 69 Query: 69 RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P V NP I SD+ EGCLS+P R V R + +RY + Q+I Sbjct: 70 PDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGLVPR--YRRIRYSGRDPYGQLI 127 Query: 125 --YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 ADG A +QHE DHL G L+ + + T+ Sbjct: 128 EREADGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165 >gi|227495080|ref|ZP_03925396.1| peptide deformylase [Actinomyces coleocanis DSM 15436] gi|226831532|gb|EEH63915.1| peptide deformylase [Actinomyces coleocanis DSM 15436] Length = 163 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 7/166 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MTYREIRVIGDPILRTPCEWITDIDDKVKGLVEDLLENVDMDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ +NPK++ S +++ EGCLS+P KR+ + V ++ + Sbjct: 61 WNIDGDIG-----YVLNPKLVEASMEEEYQDGDEGCLSVPGLWFPTKRAWYARVEGINLD 115 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I+ + L+A CLQHE DHL G+L++D L R R K++ + Sbjct: 116 GKKIIVEGEELMARCLQHECDHLEGMLYLDRLDRAMRRKAMKEVRE 161 >gi|221108715|ref|XP_002169101.1| PREDICTED: similar to CG31373 CG31373-PA, partial [Hydra magnipapillata] Length = 143 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 63/113 (55%), Gaps = 12/113 (10%) Query: 51 QIGVLYRLVVID---LQDHAHRKNPM---------VFINPKIITFSDDFSVYQEGCLSIP 98 QIG+ R V+D + + A + + VFIN +II D Y+EGCLSIP Sbjct: 2 QIGMDIRFFVVDGTPINEGAETEEDIDPSLIDFKKVFINAEIIEEDGDEWAYEEGCLSIP 61 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 RADV R F+T+RY D + +GL A +QHE DH++GILF DHL+ Sbjct: 62 GVRADVYRPEFVTIRYFDTDWVEHTETYEGLAARIIQHEYDHIDGILFTDHLT 114 >gi|323359861|ref|YP_004226257.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] gi|323276232|dbj|BAJ76377.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] Length = 188 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 11/171 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I DP+L + +++I ++ L+ +M E M + G+GLAA Q+GV R+ + Sbjct: 5 PIRIMGDPVLHAPAARVDEITEEVRTLVADMFETMDAAPGVGLAAPQVGVGLRIFTYTYE 64 Query: 65 DHAHRK------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D NP ++I P + D EGCLS P R ++RS + +D + Sbjct: 65 DDEGLPWRGVVINPELWIRPLEPGYPDPDD-ESEGCLSFPGERFPLRRSDAALLTGVDLD 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I G A LQHE DHL+GIL++D L D ++ ++K+ + R Sbjct: 124 GRPVRIEVTGWRARILQHEFDHLDGILYVDRLD----DEDSRVVAKIAKKR 170 >gi|282863355|ref|ZP_06272414.1| peptide deformylase [Streptomyces sp. ACTE] gi|282561690|gb|EFB67233.1| peptide deformylase [Streptomyces sp. ACTE] Length = 219 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 24/187 (12%) Query: 1 MVKKPLVIFPD--PILRR-------------VSRPIEKINS----DIMNLIDNMLEVMYS 41 ++ +P+ +PD P RR +SRP +++ S + LID+M MY Sbjct: 17 VLGRPVDTYPDLAPEARRGSVRRITVVGEEVLSRPCQEVTSFGSPGLAALIDDMFVTMYV 76 Query: 42 TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSI 97 DG GLAA Q+ V RL V D D ++ +NP ++ D S EGCLS+ Sbjct: 77 ADGAGLAANQVDVDLRLFVYDCPDDQGVRHVGHIVNP-VLDQPDPGSRRLVDDSEGCLSV 135 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 P + R+ TVR D + +I G A CLQHE DHL G ++D LS+ R Sbjct: 136 PGASMTLPRTDRATVRGFDKDGNPLVIEGTGYFARCLQHESDHLVGHTYLDRLSKRDRKD 195 Query: 158 ITKKMSK 164 ++M + Sbjct: 196 ALRQMEE 202 >gi|229019065|ref|ZP_04175903.1| Peptide deformylase [Bacillus cereus AH1273] gi|229025309|ref|ZP_04181728.1| Peptide deformylase [Bacillus cereus AH1272] gi|228736000|gb|EEL86576.1| Peptide deformylase [Bacillus cereus AH1272] gi|228742233|gb|EEL92395.1| Peptide deformylase [Bacillus cereus AH1273] Length = 156 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIDD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPVILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKIFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A LA +QHE+DHL+G+LF ++R Sbjct: 122 AKDFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|326383421|ref|ZP_08205108.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395] gi|326197827|gb|EGD55014.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395] Length = 197 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 15/158 (9%) Query: 5 PLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+ I +P+L + + P+E K +++I+ L+D+M + M + +G+GLAA QIG R+ Sbjct: 5 PICIIGEPVLHQPTTPVELDADSKPSAEIVTLLDDMYDTMDAANGVGLAANQIGEGLRMF 64 Query: 60 VIDLQDHAHRK-----NPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 V D D R+ NP++ + P+ + DD EGCLS+P R+ + V Sbjct: 65 VYDCPDGGVRRRGEVINPVLETSEIPETMPDPDD---NDEGCLSVPGEGFPTGRADWAKV 121 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D N I +G A LQHE HL+G L++D L Sbjct: 122 VGTDRNGDPVEIEGNGFFARMLQHETGHLDGFLYVDVL 159 >gi|238061428|ref|ZP_04606137.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149] gi|237883239|gb|EEP72067.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149] Length = 186 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 6/153 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62 +P+V PDP+L R ++ + ++ L +++ M + G +GLAA Q+GV ++ +D Sbjct: 23 RPVVSAPDPVLSRPGPEVDPTSDEVARLAADLIATMRVSPGCVGLAAPQVGVSAQVFAVD 82 Query: 63 LQDHAHR---KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + H V N +++ S + +EGC+S+PD DVKR++ + V + + Sbjct: 83 VTGHPKAVTVHGTFVLCNARVVEGSR-WKSGREGCMSVPDLTGDVKRASRLVVEGLLPGS 141 Query: 120 QHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 + + DG A LQHE+DH G+LF+D ++ Sbjct: 142 GAPVRLVTDGFEARALQHEIDHCLGLLFLDRVA 174 >gi|296231447|ref|XP_002761154.1| PREDICTED: peptide deformylase, mitochondrial-like [Callithrix jacchus] Length = 243 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR V+ P+E+ ++ L+ +++VM +GL+A Q+GV +++ ++L Sbjct: 72 DPVLRGVAAPVEREQLGGPELQRLVQRLVQVMRRQHCVGLSAPQLGVPRQVLALELTQAL 131 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +K P VF+NP + + EGC S+ + A V R + + Sbjct: 132 CQKTPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVEIS 191 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ N + + A G A +QHE+DHL G LFID + Sbjct: 192 GLNPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 228 >gi|152981418|ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp. Marseille] gi|151281495|gb|ABR89905.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp. Marseille] Length = 178 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 10/144 (6%) Query: 11 DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L RV+ P+++ + ++ LI++M + M++ +G GLAA QIGV RLV+ + + Sbjct: 11 DPRLLRVAEPVKEFGTPELDALIEDMFDTMHAANGAGLAAPQIGVNLRLVIYGFKQNTRY 70 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INPK+ S + EGCLS+P R V R F + Y + +I Sbjct: 71 PDAPPVPETVLINPKLRPLSAEMEDGWEGCLSVPGLRGVVPR--FSALHYDGFDQYGNVI 128 Query: 125 Y--ADGLLATCLQHELDHLNGILF 146 ADG A +QHE DHL+GIL+ Sbjct: 129 SRDADGFHARVVQHECDHLDGILY 152 >gi|308235005|ref|ZP_07665742.1| peptide deformylase [Gardnerella vaginalis ATCC 14018] gi|311114690|ref|YP_003985911.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] gi|310946184|gb|ADP38888.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] Length = 162 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 12/170 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR PI +I + NL++++LE + GL+A QIG+ R Sbjct: 1 MTIRQIRIVPDPVLRTPCDPIREITPAVRNLVEDLLETVNDPGRAGLSANQIGISLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ H +NP I S + EGCLS+P +R+ + + +D + + Sbjct: 61 YNIEGHIG-----YILNPVIEELSGE-QYGDEGCLSVPRLWYKTRRADYARAKGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++ GL+A +QHE DHL+G +++D RL++D+ + L QLR+ Sbjct: 115 TIVLEGKGLMARMIQHECDHLDGHVYLD---RLEKDV---RKQALRQLRN 158 >gi|224054132|ref|XP_002298107.1| peptide deformylase [Populus trichocarpa] gi|222845365|gb|EEE82912.1| peptide deformylase [Populus trichocarpa] Length = 299 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+L +R P E + I +ID+M++VM G+GLAA QIG+ R++V++ Sbjct: 118 DPVLHEPAREVDPKEIGSERIQKIIDDMVKVMRMAPGVGLAAPQIGIPLRIIVLEDTAEY 177 Query: 63 ------LQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P +V +NPK+ S+ + + EGCLS+ +RA V+R + V Sbjct: 178 IGYAPKNETKAQDRRPFDLLVIVNPKLKKKSNRTAFFFEGCLSVDGFRAIVERHLDVEVI 237 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + Q + A G A LQHE DHL G L++D + Sbjct: 238 GLSRDGQPIKVDASGWQARILQHECDHLEGTLYVDKM 274 >gi|184201105|ref|YP_001855312.1| peptide deformylase [Kocuria rhizophila DC2201] gi|183581335|dbj|BAG29806.1| peptide deformylase [Kocuria rhizophila DC2201] Length = 189 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 9/170 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI P+L R + + + ++ + L+ ++ E M ++ G+GLAA QIGV R+ Sbjct: 1 MSIRPIVISGHPVLHRPAARVTEFDAALRTLVADLHETMDASHGVGLAAPQIGVGLRIFT 60 Query: 61 IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ +NP KI D EGCLS+P +KR+ ++ + Sbjct: 61 YLYENEDGVPPRGTLVNPVLTTGKISEVVPDPDEESEGCLSVPGQAWPLKRADWVRIAGQ 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMITKK 161 D N A+G A +QHE DHL+G L++D L SR R I ++ Sbjct: 121 DENGDPVAFEANGWFARVMQHEYDHLDGKLYVDRLNPKWSRRARKAIRRE 170 >gi|323486114|ref|ZP_08091445.1| polypeptide deformylase [Clostridium symbiosum WAL-14163] gi|323400681|gb|EGA93048.1| polypeptide deformylase [Clostridium symbiosum WAL-14163] Length = 150 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 7/139 (5%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D ILR+ + +++++ I ++D+ML+ + ++ +G LAA Q+G+L RLVVI+ + Sbjct: 11 DEILRKKCKEVKEVDDKIRVMLDDMLDTLRHTENGAALAANQVGILKRLVVIE-----YC 65 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + +NPKII S EGCLS P + R +TV+ +D Q I+ +G Sbjct: 66 GELLKLVNPKIIGRSGTQECI-EGCLSFPGKFVNTIRPQKVTVQALDEYGQEVILTGEGE 124 Query: 130 LATCLQHELDHLNGILFID 148 +A C HEL+HL+G +F+D Sbjct: 125 MAKCYCHELEHLDGEIFLD 143 >gi|302867673|ref|YP_003836310.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315505926|ref|YP_004084813.1| peptide deformylase [Micromonospora sp. L5] gi|302570532|gb|ADL46734.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315412545|gb|ADU10662.1| peptide deformylase [Micromonospora sp. L5] Length = 167 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 9/149 (6%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62 +P+ I DP+LR S P+ ++++ L+ ++++ + G G+AA QIGV ++ V D Sbjct: 2 RPIRIIGDPVLRTPSEPVTSFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVNAQVFVYD 61 Query: 63 LQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 H H NP + + SD+ +EGCLSIP R+ T D + + Sbjct: 62 ADGHRGHMINPTLEV-------SDELQDDEEGCLSIPGLYFPTPRALHATAHGYDQHGEP 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + G LA LQHE DHL G L++D L Sbjct: 115 LTVTGSGFLARALQHETDHLRGRLYVDTL 143 >gi|195444659|ref|XP_002069969.1| GK11285 [Drosophila willistoni] gi|194166054|gb|EDW80955.1| GK11285 [Drosophila willistoni] Length = 173 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 17/155 (10%) Query: 11 DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LRR + + +K+NS +I ID M+ V+ D +G+AA QIGV R++V++ + Sbjct: 14 DPVLRRRAEEVSGDKVNSPEIKETIDCMVHVLRHYDCVGVAAPQIGVPLRIIVMEFHEGK 73 Query: 68 HRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + P VFINP++ +D + EGC+S+ Y A V+R + V+ Sbjct: 74 KNQFPAEIYAERKMSTLSLAVFINPELEILNDKQHKHPEGCMSVRGYSAQVERHDRVRVK 133 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + + +G A QHE+DHLNGI++I+ Sbjct: 134 GIGMMGTPSELELEGWSARIAQHEMDHLNGIIYIE 168 >gi|325261897|ref|ZP_08128635.1| peptide deformylase [Clostridium sp. D5] gi|324033351|gb|EGB94628.1| peptide deformylase [Clostridium sp. D5] Length = 158 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D IL + + + K+ LI++ML+ MY G+GLAA Q+GVL +V Sbjct: 1 MAIREVRMIGDEILTKQCKEVTKVTLRTKMLIEDMLDTMYEKMGVGLAAPQVGVLKNIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP II S + +EGCLS+P V R + VR ++ + + Sbjct: 61 IDVGE-----GPIVLINPVIIEASGE-QTGEEGCLSVPGKWGIVTRPDHVKVRALNEDME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + +GLLA HE+ HL+G L++D + Sbjct: 115 EFEMEGEGLLARAFCHEIAHLSGELYVDRV 144 >gi|302563993|ref|NP_001181771.1| peptide deformylase, mitochondrial [Macaca mulatta] Length = 243 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L + Sbjct: 72 DPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPLQVLALELPEAL 131 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R+ P VF+NP + + EGC S+ + A V R + + Sbjct: 132 CREFPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 191 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D N + A G A +QHE+DHL G LFID + Sbjct: 192 GLDPNGEQVAWQASGWAARIIQHEMDHLQGCLFIDKM 228 >gi|159038089|ref|YP_001537342.1| peptide deformylase [Salinispora arenicola CNS-205] gi|157916924|gb|ABV98351.1| peptide deformylase [Salinispora arenicola CNS-205] Length = 168 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M +P+ + DP+LR + P+ ++++ L+ ++++ + G G+AA QIGV R+ Sbjct: 1 MTMRPIRLIGDPVLRTPAEPVTSFDAELRALVADLMDTLLGAPGRAGVAAPQIGVSARVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D HR + +NP + D+ EGCLS+P R+ T +D + Sbjct: 61 VYDAD--GHRGH---LVNP-TLELGDEQQDDDEGCLSVPGLYFPTSRAMHATAHGVDQHG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Q I G LA LQHE DHL G L++D L Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTL 145 >gi|124267003|ref|YP_001021007.1| peptide deformylase [Methylibium petroleiphilum PM1] gi|124259778|gb|ABM94772.1| Peptide deformylase [Methylibium petroleiphilum PM1] Length = 177 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68 DP L R++ P+ + ++ ++ LI++M + M + +G GLAA QIGV +LV+ + + Sbjct: 11 DPRLLRIAHPVREFDTPALHALIEDMFDTMEAANGAGLAAPQIGVDLQLVIFGFTKSERY 70 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V INP+I S+D EGCLS+P R V R I D + Sbjct: 71 PEAPPVPRTVLINPQITPLSEDLEDGWEGCLSVPGLRGVVPRHQRIRYTGFDPQGRRIER 130 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G+L+ Sbjct: 131 EAEGFHARVVQHECDHLAGVLY 152 >gi|255319189|ref|ZP_05360406.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262379692|ref|ZP_06072848.1| polypeptide deformylase [Acinetobacter radioresistens SH164] gi|255303582|gb|EET82782.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262299149|gb|EEY87062.1| polypeptide deformylase [Acinetobacter radioresistens SH164] Length = 159 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 16/139 (11%) Query: 23 KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP--------- 72 + N++ + L M M +G+G+AA Q+ + R++++ A R NP Sbjct: 26 EFNTEWLRQLAQAMHTTMLEQNGVGIAAPQVYISKRIIIV-----ASRSNPRYPDAPEME 80 Query: 73 -MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V +NP+I+ FS + S+ +EGCLS+ D R V+R+ + + Y+ + G A Sbjct: 81 AVVMVNPEILEFSRETSLGEEGCLSVSDVRGTVERAETVKLCYLTLEGEPVETIYKGFPA 140 Query: 132 TCLQHELDHLNGILFIDHL 150 +QHE+DHLNGILF++ L Sbjct: 141 RIIQHEIDHLNGILFVERL 159 >gi|217974557|ref|YP_002359308.1| peptide deformylase [Shewanella baltica OS223] gi|217499692|gb|ACK47885.1| peptide deformylase [Shewanella baltica OS223] Length = 185 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL R + + ++++ +L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILGRTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 75 PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + Q G +A QHE DHL GI ++ Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLE 163 >gi|294669088|ref|ZP_06734174.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309080|gb|EFE50323.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 91 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 56/85 (65%) Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 +IT + + Y+EGCLS+P V R+ +TV +D + + ADGLLA C+QHELD Sbjct: 1 MITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALDEKGEKFTLEADGLLAICIQHELD 60 Query: 140 HLNGILFIDHLSRLKRDMITKKMSK 164 HL GI+F++HLS+LK+ I K+ K Sbjct: 61 HLMGIVFVEHLSQLKQGRIKTKLKK 85 >gi|299535919|ref|ZP_07049239.1| peptide deformylase [Lysinibacillus fusiformis ZC1] gi|298728671|gb|EFI69226.1| peptide deformylase [Lysinibacillus fusiformis ZC1] Length = 164 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P +L + +IN +I+ L+D++ + M DG+G+AA QI V R+ + Sbjct: 1 MAIKKVIENPAKVLSTPCAEVTEINDEIITLLDDLYDTMVEYDGVGIAAPQIDVGLRVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L ++ + INP ++ +D V EGCLS P +V+R +++ + D + Sbjct: 61 VEL---GEERDILEMINPTVVE-TDGAEVDIEGCLSFPGLYGEVERPSYVKIEACDREGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A G A + HE+DHL+G+LF + R+ Sbjct: 117 VYELEAGGFDARAILHEIDHLDGVLFDSKIKRI 149 >gi|156303056|ref|XP_001617464.1| hypothetical protein NEMVEDRAFT_v1g78625 [Nematostella vectensis] gi|156193964|gb|EDO25364.1| predicted protein [Nematostella vectensis] Length = 135 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 66/124 (53%), Gaps = 12/124 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + +P+LR+VS I K ++ I +M E MY G+GLAA Q+G+ RL VID + Sbjct: 12 PIYGYGEPVLRKVSEEITKEYPNLKETIADMFETMYQAYGLGLAAPQVGLPIRLFVIDTE 71 Query: 65 -----DHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 D ++ VFIN KI+ D + EGCLSIPD R DV R IT+ Sbjct: 72 PLADSDEVSKEEAEELKTFKKVFINAKILKEEGDVWGFNEGCLSIPDVREDVFRHETITI 131 Query: 113 RYMD 116 Y D Sbjct: 132 EYYD 135 >gi|270157701|ref|ZP_06186358.1| peptide deformylase [Legionella longbeachae D-4968] gi|269989726|gb|EEZ95980.1| peptide deformylase [Legionella longbeachae D-4968] Length = 172 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +PILR+V+ PI E + +L+ M+++M +G+AA QIGV R++V + Sbjct: 9 NPILRQVAEPINASEFGTPWLKSLVQTMIDIMAEKAAVGVAAPQIGVSKRVIVFGTS-YT 67 Query: 68 HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R+ P INP + S++ EGCL+ D +V R+ I D Sbjct: 68 KRRQPEYPIPDTALINPTLKVLSEEIQTDYEGCLNCDDIMGEVPRAMEIEYSGFDIEGNP 127 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 A GL A LQHE+DHL+GILFID + Sbjct: 128 VTKRARGLEARILQHEIDHLDGILFIDRIE 157 >gi|227874915|ref|ZP_03993067.1| peptide deformylase [Mobiluncus mulieris ATCC 35243] gi|269976483|ref|ZP_06183468.1| peptide deformylase [Mobiluncus mulieris 28-1] gi|306818239|ref|ZP_07451969.1| peptide deformylase [Mobiluncus mulieris ATCC 35239] gi|307701754|ref|ZP_07638768.1| peptide deformylase [Mobiluncus mulieris FB024-16] gi|227844492|gb|EEJ54649.1| peptide deformylase [Mobiluncus mulieris ATCC 35243] gi|269935284|gb|EEZ91833.1| peptide deformylase [Mobiluncus mulieris 28-1] gi|304648978|gb|EFM46273.1| peptide deformylase [Mobiluncus mulieris ATCC 35239] gi|307613012|gb|EFN92267.1| peptide deformylase [Mobiluncus mulieris FB024-16] Length = 164 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 13/170 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI----NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + + + DP+LR P E I + + L++++LE + GLAA QIGV Sbjct: 1 MAFREIRVVGDPVLRT---PCEWIKDPRDPGVKQLVEDLLENVDQEGRAGLAANQIGVSL 57 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R ++ +NPK++ S D++ EGCLS+P+ +R+ + V + Sbjct: 58 RAFSWNIDGEIG-----YVLNPKLVEVSQDEYQDGDEGCLSVPNLFYPTERAWYARVEGI 112 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + ++ + L+ CLQHE DHL GIL+ID L R R +++ K+ Sbjct: 113 DLDGKPVVVEGEELMGRCLQHETDHLEGILYIDKLERKYRKAALQQVRKM 162 >gi|315604653|ref|ZP_07879716.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313665|gb|EFU61719.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] Length = 210 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 32/178 (17%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV-----LYRLV 59 P+ I P+L R++ P+E +S++ +L+ +M++ M++ G+GLAA Q+GV ++R Sbjct: 5 PICITGTPVLHRLAAPVESFDSELRDLVTDMIDTMHAAPGVGLAAPQVGVGSQVFVWRYA 64 Query: 60 VIDLQDHAHR------KNPM---------VFINP------------KIITFSDDFSVYQE 92 D +R + P V +NP I+ D + E Sbjct: 65 GGGAFDTHYRDVLQLDEGPARGFNTVTSGVVVNPTLDLVWDTHGAGAILPAEPDIAHESE 124 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 GCLS+P Y ++R+ +R D + A G LA QHE DHL G L++D L Sbjct: 125 GCLSVPGYGYPLRRALGAVLRGYDTRGNAIEVSARGWLARIFQHEYDHLQGTLYVDRL 182 >gi|284117858|ref|ZP_06386753.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3] gi|283829473|gb|EFC33840.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3] Length = 160 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 14/143 (9%) Query: 30 NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDF 87 ID+M E M + +GIGLAA Q+ +L+V+ D QD V INP+I+ + Sbjct: 17 QFIDDMFETMDAYEGIGLAAPQVSRSEQLIVMRCDGQDAIPET---VLINPRIVFYGPAQ 73 Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 + EGCLS+ R V R + I V+ +D + A GL C+QHE+DHL G LF+ Sbjct: 74 AEMWEGCLSVDGLRGKVTRPSSIRVQALDREGRSVDFEASGLFGVCIQHEMDHLIGKLFL 133 Query: 148 DHLSRLKRDMITKKMSKLVQLRD 170 D ++ L S L QL++ Sbjct: 134 DRMTDL---------SSLTQLKE 147 >gi|87162608|gb|ABD28403.1| Formylmethionine deformylase [Medicago truncatula] Length = 257 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 DP++ +R ++ +I SD I N+ID+M+ VM G+G+AA QIG+ R++V++ ++ Sbjct: 75 DPVIHEPAREVDHSEIKSDKIQNIIDDMILVMRKAPGVGVAAPQIGIPLRIIVLEDKEEF 134 Query: 67 ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A + P +V +NPK+ S+ + + EGCLS+ ++A V+R + V Sbjct: 135 ICYNTEEETKAQDRRPFDLLVILNPKLKNKSNRTAFFFEGCLSVDRFQALVERYLDVEVT 194 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D + I A G A LQHE DHL+G L++D + Sbjct: 195 GFDRYGEPIKINASGWQARILQHECDHLDGTLYVDKM 231 >gi|237786237|ref|YP_002906942.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385] gi|237759149|gb|ACR18399.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385] Length = 220 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 28/189 (14%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L + P+ + +I L+ +M E + + G+GLAA QIGV RL V Sbjct: 11 MTVRPIVIAGDPVLHNPTEPVTESPEEIAELVADMYETLELSHGVGLAANQIGVAKRLFV 70 Query: 61 IDL------------------QDHAHRK----NPMVFIN--PKIITFSDDFSVYQEGCLS 96 D Q RK NP++ + P+ + +D EGCLS Sbjct: 71 YDCPDIEGPDGDSKSEEELKAQGGPRRKGCVVNPVLETSEIPETMPATDGSDA--EGCLS 128 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 +P R+ + V D + + + G A CLQHE+ HL+G L+ D L R R Sbjct: 129 VPGLDFPTGRAHWARVTGTDEHGEPVRVEGYGFFARCLQHEVGHLDGYLYTDMLIGRWAR 188 Query: 156 DMITKKMSK 164 M KK+ + Sbjct: 189 -MAKKKIKR 196 >gi|302870289|ref|YP_003838926.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315503435|ref|YP_004082322.1| formylmethionine deformylase [Micromonospora sp. L5] gi|302573148|gb|ADL49350.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315410054|gb|ADU08171.1| formylmethionine deformylase [Micromonospora sp. L5] Length = 187 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 84/153 (54%), Gaps = 6/153 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62 + +V P+P+L R ++ +++++ L +++ M + G +GLAA Q+GV ++ +D Sbjct: 24 RAVVTAPEPVLSRPGPEVDPTSAEVVRLAADLVATMRVSPGCVGLAAPQVGVSAQVFAVD 83 Query: 63 LQDHAHR---KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR-YMDCN 118 + H V N +++ S + +EGC+S+PD DVKR++ + V + + Sbjct: 84 VTGHPKAVTVHGTFVLCNARVVEASR-WKAGREGCMSVPDLTGDVKRASRLVVEGALPGS 142 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + DG A LQHE+DH G+LF+D ++ Sbjct: 143 GEPVRLVTDGFEARALQHEIDHCAGLLFLDRVA 175 >gi|18394237|ref|NP_563974.1| PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase [Arabidopsis thaliana] gi|11320952|gb|AAG33973.1|AF250959_1 peptide deformylase-like protein [Arabidopsis thaliana] gi|332191194|gb|AEE29315.1| peptide deformylase 1A [Arabidopsis thaliana] Length = 269 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 17/162 (10%) Query: 6 LVIFPDPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+L +R P E + I +ID+M++VM G+GLAA QIGV R++V++ Sbjct: 83 IVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLE 142 Query: 63 --------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 L + MV +NP + S+ +++ EGCLS+ +RA V+R Sbjct: 143 DTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYL 202 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V D + + A G A LQHE DHL+G L++D + Sbjct: 203 EVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKM 244 >gi|119773777|ref|YP_926517.1| peptide deformylase [Shewanella amazonensis SB2B] gi|119766277|gb|ABL98847.1| Peptide deformylase [Shewanella amazonensis SB2B] Length = 174 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 5/152 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I DP+L + + P+ + + L ++ M G+G+AA QIGV RL ++ + Sbjct: 8 PIAITGDPVLYQKAAPVTVFDDSLERLSQTLMATMLQAKGVGIAAPQIGVSQRLFIVASR 67 Query: 65 DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A PMV +NP +++ S ++ +EGCLS+P R + R ++ ++ D Sbjct: 68 PNERYPDAPLMEPMVMVNPALLSGSSEWESSEEGCLSVPGKRLSIARHRWVEAKWQDLQG 127 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 DG +A QHELDHL+GI ++ ++ Sbjct: 128 NAYSGRLDGFIARIFQHELDHLDGITLLERVT 159 >gi|17433051|sp|Q9FV53|DEF1A_ARATH RecName: Full=Peptide deformylase 1A, chloroplastic; Short=AtDEF1; Short=AtPDF1A; Short=PDF 1A; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|5103837|gb|AAD39667.1|AC007591_32 Simalar to gi|4377403 Polypeptide Deformylase from Chlamydia pneumoniae genome gb|AE001687 [Arabidopsis thaliana] gi|13605760|gb|AAK32873.1|AF361861_1 At1g15390/F9L1_34 [Arabidopsis thaliana] gi|22136570|gb|AAM91071.1| At1g15390/F9L1_34 [Arabidopsis thaliana] Length = 259 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 17/162 (10%) Query: 6 LVIFPDPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+L +R P E + I +ID+M++VM G+GLAA QIGV R++V++ Sbjct: 73 IVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLE 132 Query: 63 --------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 L + MV +NP + S+ +++ EGCLS+ +RA V+R Sbjct: 133 DTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYL 192 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V D + + A G A LQHE DHL+G L++D + Sbjct: 193 EVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKM 234 >gi|126649676|ref|ZP_01721912.1| peptide deformylase [Bacillus sp. B14905] gi|126593395|gb|EAZ87340.1| peptide deformylase [Bacillus sp. B14905] Length = 176 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 91/165 (55%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P +L + +IN +++ L+D++ + M DG+G+AA QI + R+ + Sbjct: 13 MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L ++ + +NP +I +D + EGCLS P +V+R +++ + D + Sbjct: 73 VEL---GEERDILEMVNPTVIE-TDGAEIDIEGCLSFPGLYGEVERPSYVKIEACDREGR 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + A G A + HE+DHL+G+LF S++KR + +++ ++ Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFD---SKIKRVITAEELEEM 170 >gi|269124846|ref|YP_003298216.1| peptide deformylase [Thermomonospora curvata DSM 43183] gi|268309804|gb|ACY96178.1| peptide deformylase [Thermomonospora curvata DSM 43183] Length = 178 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 78/152 (51%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ DP+LR P+ ++ + L+D+M MY+ +G GLAA QIGV ++ V D Sbjct: 14 RPIRRLGDPVLRTECDPVRTFDAGLRRLVDDMFATMYAANGAGLAANQIGVSLQVFVYDC 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +D R++ INP ++ D V EGCLS+P R R V +D + + Sbjct: 74 EDDLGRRHVGHVINPVLVAEDGDIVVEDEGCLSVPGLRFPTPRYRHAVVEGVDLDNKPLR 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I G A CLQHE HL G ++ID L R Sbjct: 134 IEGTGYFARCLQHETYHLRGGVYIDVLKGETR 165 >gi|76253777|ref|NP_001028902.1| hypothetical protein LOC619248 [Danio rerio] gi|66911060|gb|AAH97196.1| Zgc:114141 [Danio rerio] gi|148725884|emb|CAN87858.1| novel protein (zgc:114141) [Danio rerio] Length = 247 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR + +E ++ +I +++VM + +GL+A QIGV R++ ++ Sbjct: 76 DPVLRSHAAEVEPGAIQGPEVQKVIKTLVKVMRKLECVGLSAPQIGVPLRILALEYPKKM 135 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ M+FINP++ ++QE C SI Y A V R + V Sbjct: 136 LEESSTASVEARGLVAVPLMIFINPQLRVLDGRTVIFQEACESISGYSASVPRYVSVEVS 195 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ A+ A G A LQHE+DHLNG+L+IDH+ Sbjct: 196 GLNEKAEEVSWKASGWPARILQHEMDHLNGVLYIDHM 232 >gi|295835488|ref|ZP_06822421.1| peptide deformylase [Streptomyces sp. SPB74] gi|295825514|gb|EFG64289.1| peptide deformylase [Streptomyces sp. SPB74] Length = 221 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 14/169 (8%) Query: 5 PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + P E + L+ M M G+GLAA QIGV RL V++ Sbjct: 32 PIVAAGDPVLRTPAAPYEGQLPGPLLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 91 Query: 63 ----LQDHAHR---KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + R + P+ V +NP + +++ EGCLS+P ++A V R A + + Sbjct: 92 DPATVPEEVRRMRGREPLPYRVLVNPHYAPAGERRALFYEGCLSVPGWQAVVARHAVVRL 151 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 R D + G A +QHE DHL+G L++D L R + + + Sbjct: 152 RAEDEHGTALDEEVGGWAARIVQHETDHLDGTLYVDRA--LPRSLTSNE 198 >gi|318061932|ref|ZP_07980653.1| polypeptide deformylase [Streptomyces sp. SA3_actG] gi|333028589|ref|ZP_08456653.1| putative polypeptide deformylase [Streptomyces sp. Tu6071] gi|332748441|gb|EGJ78882.1| putative polypeptide deformylase [Streptomyces sp. Tu6071] Length = 161 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 69/152 (45%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 +R + L++++ MY+ G+GLAA QIG R+ V D D R++ +N Sbjct: 6 ARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYDCPDDEDRRHLGHLVN 65 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 P+++ EGCLS+P A R V + + + G A CLQHE Sbjct: 66 PRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARRRVEGTGFFARCLQHE 125 Query: 138 LDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DHL G L++D L + + ++ + R Sbjct: 126 YDHLEGGLYVDRLDARRHRKVLREAGRTGWGR 157 >gi|332653344|ref|ZP_08419089.1| peptide deformylase [Ruminococcaceae bacterium D16] gi|332518490|gb|EGJ48093.1| peptide deformylase [Ruminococcaceae bacterium D16] Length = 169 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 7/154 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV- 59 M + ++ + L +V P+ K + + +LID+M E + G+GLAA Q+G+L R+V Sbjct: 3 MAIREILTRGESALTKVCHPVTKFDQKLWDLIDDMKETLAEAGGVGLAAPQVGILRRVVI 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VI+ D + +NP+I+ + EGCLS+P VKR ++ V+ D Sbjct: 63 VINEADEV-----LELVNPEIVAQQGEQDGL-EGCLSVPGLWGFVKRPEWVKVKAQDRFG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + GL A C HEL HL+G L+ + +L Sbjct: 117 KEYEAEGTGLTARCFCHELAHLDGHLYTELTDKL 150 >gi|323487022|ref|ZP_08092334.1| peptide deformylase [Clostridium symbiosum WAL-14163] gi|323692064|ref|ZP_08106311.1| peptide deformylase [Clostridium symbiosum WAL-14673] gi|323399670|gb|EGA92056.1| peptide deformylase [Clostridium symbiosum WAL-14163] gi|323503864|gb|EGB19679.1| peptide deformylase [Clostridium symbiosum WAL-14673] Length = 159 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 5/137 (3%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D +L + +P++++ LI++M E MY +G+GLAA Q+G+ ++VVID+ D Sbjct: 11 DEVLTKECKPVKEMTEHTAELIEDMFETMYEANGVGLAAPQVGIRKQIVVIDVDDG---- 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 N V INP+I+ ++ EGCLS+P V R + V+ ++ + + +GLL Sbjct: 67 NQYVLINPEIVE-TEGSQTGSEGCLSVPGKTGVVTRPEKVKVKALNEKMEEFELEGEGLL 125 Query: 131 ATCLQHELDHLNGILFI 147 A + HE DHL G L++ Sbjct: 126 ARAICHECDHLKGQLYV 142 >gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase [Herbaspirillum seropedicae SmR1] gi|300074269|gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68 DP L R ++P+ + + ++ L+D+M + M + +G GLAA QIGV +LV+ Q+ + Sbjct: 11 DPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLVIFGFGQNQRY 70 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P V INP + S+ EGCLS+P R V R + + + +D N + Sbjct: 71 PDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQGVDQNGEPIDR 130 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 +G A +QHE DHL GIL+ + +R T+ Sbjct: 131 SVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTE 166 >gi|90410436|ref|ZP_01218452.1| hypothetical polypeptide deformylase [Photobacterium profundum 3TCK] gi|90328677|gb|EAS44961.1| hypothetical polypeptide deformylase [Photobacterium profundum 3TCK] Length = 178 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%) Query: 11 DPILRRVSRPIEKINSDIMN----LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----- 61 +P+LR P E +++ +N L+ ++ ++M S G+G+AA Q+G R ++ Sbjct: 12 NPLLRV---PAEALSTTQINVTLPLLASLEQIMLSHQGVGIAAPQVGESLRAFIVASRPN 68 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D HA P + INP+++ SD EGCLSIP RA + R I V Y++ Sbjct: 69 DRYPHAPLMEPTIMINPELLWHSDLMEKDWEGCLSIPGIRAKINRYTHIRVSYLNVLGDV 128 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +A QHELDHLNGI+F+D +L Sbjct: 129 IETEFTDFIARIFQHELDHLNGIVFLDRADKL 160 >gi|78101135|pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As Precipitant gi|78101136|pdb|1ZXZ|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As Precipitant gi|78101137|pdb|1ZY0|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-6000 gi|78101138|pdb|1ZY0|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-6000 gi|78101139|pdb|1ZY1|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a) In Complex With Met-Ala-Ser gi|78101140|pdb|1ZY1|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a) In Complex With Met-Ala-Ser Length = 197 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 17/162 (10%) Query: 6 LVIFPDPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+L +R P E + I +ID+M++VM G+GLAA QIGV R++V++ Sbjct: 6 IVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLE 65 Query: 63 --------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 L + MV +NP + S+ +++ EGCLS+ +RA V+R Sbjct: 66 DTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYL 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V D + + A G A LQHE DHL+G L++D + Sbjct: 126 EVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKM 167 >gi|296116575|ref|ZP_06835185.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] gi|295976787|gb|EFG83555.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] Length = 178 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 7/159 (4%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-- 70 +LRR + DI++L+ +M+E M G+GLAA Q+ R+ V + D Sbjct: 14 LLRRADAVTDPTAPDIVHLVADMIETMEDAGGVGLAAPQVHRSCRVFVYRVPDTRSSGAP 73 Query: 71 -----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P V INP + ++ + EGCLSIP R V R + D + Sbjct: 74 DDQPCGPQVLINPHLTPIGEETVLRLEGCLSIPGLRGWVPRHTRVAYHGYDAQGRQVKGT 133 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A G LA +QHE DHLNGIL+ ++ L + +M++ Sbjct: 134 ASGFLANVMQHEYDHLNGILYPMRMNDLAKMGFDTEMAR 172 >gi|159463808|ref|XP_001690134.1| predicted protein [Chlamydomonas reinhardtii] gi|158284122|gb|EDP09872.1| predicted protein [Chlamydomonas reinhardtii] Length = 250 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 4/131 (3%) Query: 41 STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 S DG+GLAA Q+GV RL+V + N + +NP+I+ + +EGCLS P Sbjct: 95 SDDGVGLAAPQVGVNVRLMVFNPMGRDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRI 154 Query: 101 RADVKRSAFITVRYMDCNAQH-QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 DV+RS I V+ +D Q ++ D +A QHE DHL G+LF D R+K ++ Sbjct: 155 YGDVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEFDHLQGVLFHD---RMKPSVLE 211 Query: 160 KKMSKLVQLRD 170 +LV L + Sbjct: 212 TVRPELVALEE 222 >gi|297158757|gb|ADI08469.1| peptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 178 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 76/158 (48%), Gaps = 15/158 (9%) Query: 17 VSRPIEKINS----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH------ 66 +SRP ++ ++ LID+M MY DG GLAA Q+GV RL V D D Sbjct: 6 LSRPCREVTEFGTPELSALIDDMFLTMYVADGAGLAANQVGVDLRLFVYDCPDDYGIRHV 65 Query: 67 AHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H NP++ + P DDF EGCLS+P V R+ R D + +I Sbjct: 66 GHIINPVLDLPGPGSRRLVDDF----EGCLSVPGAAMAVPRTDRAVARGFDKDGDPLVIE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 G A CLQHE DH+ G ++D LS+ R ++M Sbjct: 122 GLGYFARCLQHETDHVVGHTYLDRLSKRDRKAALRQME 159 >gi|255629341|gb|ACU15015.1| unknown [Glycine max] Length = 223 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 14/144 (9%) Query: 21 IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID--LQDHAHRKNP------ 72 IE + + +ID+M+ VM G+GLAA QIG+ R++V++ +Q A+ N Sbjct: 55 IEIKSERVQKIIDDMVRVMRKAPGVGLAAPQIGIPLRIIVLEDKIQYMAYYSNQELKAQD 114 Query: 73 ------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 +V +NPK+ + +++ EGCLS+P Y A V+R + V D + I A Sbjct: 115 RTPFDLLVILNPKLKNTTTRTALFFEGCLSVPGYSAVVERYLDVEVAGFDRYGEPIKINA 174 Query: 127 DGLLATCLQHELDHLNGILFIDHL 150 G A LQHE DHL+G L++D + Sbjct: 175 TGWQARILQHECDHLDGTLYVDKM 198 >gi|119960758|ref|YP_947936.1| peptide deformylase [Arthrobacter aurescens TC1] gi|119947617|gb|ABM06528.1| peptide deformylase [Arthrobacter aurescens TC1] Length = 224 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 12/149 (8%) Query: 12 PILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV------IDL 63 P+LR+++ P + ++++ ++ M EVM+ G+GLAA Q+G+ +L V +D Sbjct: 43 PVLRQLAAPYDGQIDDAELAAFLERMKEVMHDAPGVGLAAPQLGIPLQLAVLEDKYEVDP 102 Query: 64 QDHAHR-KNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A R + P+ F +NP+ + + + EGCLS+ Y+A V R + +RY + Sbjct: 103 ESAAVRHREPLEFFAIVNPQYRPLGTETASFYEGCLSVSGYQAVVTRHRNVELRYTNPAG 162 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + + G A +QHE DHL GIL++D Sbjct: 163 EPVEEWFSGWQARIVQHETDHLRGILYLD 191 >gi|294790924|ref|ZP_06756082.1| peptide deformylase [Scardovia inopinata F0304] gi|294458821|gb|EFG27174.1| peptide deformylase [Scardovia inopinata F0304] Length = 162 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 6/153 (3%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PDPILR V PI I I +L+ ++ + + GL+A QIGV R +++ Sbjct: 10 PDPILRTVCDPITTITPAIRSLVRDLTDTVDDPGRAGLSANQIGVGLRAFSFNIEGKVD- 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 +NP+++ S + EGCLS+P +R+ + V +D N +++ GL Sbjct: 69 ----YILNPRLVKTSGE-QYGDEGCLSVPGLWYKTRRADYARVEGIDLNGHKKVLEGHGL 123 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + LQHE DHL+G +++D L + +R + M Sbjct: 124 MGRMLQHECDHLDGHVYLDRLEKEERRAALRYM 156 >gi|254431098|ref|ZP_05044801.1| peptide deformylase [Cyanobium sp. PCC 7001] gi|197625551|gb|EDY38110.1| peptide deformylase [Cyanobium sp. PCC 7001] Length = 180 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 12/161 (7%) Query: 1 MVKKPLVIFPDPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P++ DP LR+V+ P + I S ++ L+D++ + M + DG GLAA QIGV R Sbjct: 1 MAIRPVLRLGDPFLRQVAVAVPRQAIGSPELSALLDDLRDTMAARDGAGLAAPQIGVALR 60 Query: 58 LVVIDLQDHA-HRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +V+ + + + P V INP + S EGCLS+P R V R + + Sbjct: 61 VVIFGFTTNPRYPEAPPIPDTVLINPVLTPLGSARSSGWEGCLSVPGLRGLVPR--WDRI 118 Query: 113 RYMDCNAQHQIIY--ADGLLATCLQHELDHLNGILFIDHLS 151 RY + Q + + +G A +QHE DHL+G+LF D + Sbjct: 119 RYTGLDEQGRPLQREVEGFHARVVQHECDHLDGVLFPDRIE 159 >gi|284031698|ref|YP_003381629.1| peptide deformylase [Kribbella flavida DSM 17836] gi|283810991|gb|ADB32830.1| Peptide deformylase [Kribbella flavida DSM 17836] Length = 240 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 18/170 (10%) Query: 5 PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + D + + ++ + M + G+GLAA Q+GV R+ V Sbjct: 51 PIVQLGDPVLRRKAEPFDGQFDDGLLKDFVELLRRTMLAAPGVGLAAPQVGVPLRIAV-- 108 Query: 63 LQD---------HAHRKNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 L+D A + P+ F+ NP+ D + EGCLS+P + V R + Sbjct: 109 LEDPATVSAEVAEARERYPLEFLAVLNPEYAPRGRDKRGFYEGCLSMPGFTGVVSRPLKV 168 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 Y D + + G A QHE DHLNG L++D + R M T Sbjct: 169 DAGYSDLTGARRRLTLSGWQARIFQHETDHLNGRLYVDQVE--PRSMATS 216 >gi|238059170|ref|ZP_04603879.1| peptide deformylase [Micromonospora sp. ATCC 39149] gi|237880981|gb|EEP69809.1| peptide deformylase [Micromonospora sp. ATCC 39149] Length = 175 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M +P+ I DP+LR P+ ++++ L+ ++++ + G G+AA QIGV ++ Sbjct: 8 MTMRPIRIIGDPVLRTACEPVTTFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVSAQVF 67 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + HR + INP + SD+ EGCLSIP R+ T D + Sbjct: 68 VYNAD--GHRGH---MINP-TLELSDETQGDDEGCLSIPGLYFPTPRALHATAHGFDQHG 121 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I G LA LQHE DHL+G L++D L Sbjct: 122 EPLTICGSGFLARALQHETDHLHGRLYVDTL 152 >gi|319763298|ref|YP_004127235.1| peptide deformylase [Alicycliphilus denitrificans BC] gi|330825493|ref|YP_004388796.1| peptide deformylase [Alicycliphilus denitrificans K601] gi|317117859|gb|ADV00348.1| peptide deformylase [Alicycliphilus denitrificans BC] gi|329310865|gb|AEB85280.1| peptide deformylase [Alicycliphilus denitrificans K601] Length = 179 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 19/159 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ ++ DP L RV+RP+ + ++D + L+ ++L+ M++ +G GLAA QIGV ++V Sbjct: 1 MTQRTILKMGDPRLLRVARPVTRFDTDELHGLLADLLDTMHAANGAGLAAPQIGVDLQVV 60 Query: 60 VIDLQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 V + NP V INP + D+ S+ EGCLS+P R V R + Sbjct: 61 VFG----SGAPNPRYPDAPVVPRTVLINPVVTPIGDEESLDWEGCLSVPGMRGMVPR--W 114 Query: 110 ITVRYMDCNAQHQII--YADGLLATCLQHELDHLNGILF 146 TVRY + + + I G A +QHE DHL G L+ Sbjct: 115 QTVRYTGFDVRGEPIDRTVSGFHARVVQHECDHLWGKLY 153 >gi|329938533|ref|ZP_08287958.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] gi|329302506|gb|EGG46397.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] Length = 218 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P E ++++ +++ + + M++ G+GLAA Q+GV R+ VI+ Sbjct: 28 PIVAAGDPVLRRGAEPFEGQLDAPLLDRFLAALRATMHAAPGVGLAAPQVGVPLRIAVIE 87 Query: 63 LQD-------HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + P V +NP ++ + + EGCLS+P ++A V R A + + Sbjct: 88 DPAPVPEEVRSARGRVPQPYRVLVNPSYEAVGEERAAFFEGCLSVPGWQAVVARHARVRL 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R +D G A +QHE DHL+G L++D Sbjct: 148 RGLDARGAVLDEEFAGWPARIVQHETDHLDGTLYLDR 184 >gi|297572267|ref|YP_003698041.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595] gi|296932614|gb|ADH93422.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595] Length = 224 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+L + S + + + L +M E + G+GLAA QIG+ + V + Sbjct: 4 PIHVYGSPVLHKTSAKVTVFDEKLATLAQDMFETCEAAPGVGLAAPQIGLDLAMFVW-MY 62 Query: 65 DHAHRKNPM--VFINPKIITFSDDF----SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D K P V +NP ++ D +EGCLS P Y+ ++RS +R D Sbjct: 63 DGPEHKGPQRGVAVNPTLLIEPVDVFEPGPADEEGCLSFPGYQYGLRRSPRAVLRAQDEK 122 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A G A LQHE DHL G +++D L+ + K M + Sbjct: 123 GEWYDLEATGWFARILQHEYDHLKGRIYVDRLTGKPAHQVEKVMKR 168 >gi|163842029|ref|YP_001626434.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] gi|162955505|gb|ABY25020.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] Length = 190 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI +P+L R + ++ + + L+ +M E +G GLAA QIG+ R+ V Sbjct: 1 MSVHPIVIKGEPVLHRRATEVKDFDDALRTLVVDMHETNAVANGAGLAAPQIGIGLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +++ V +NP K+ + D EGCLS+P +KR+ ++ V Sbjct: 61 YAMENDDDVPAKGVLVNPTLVLGKVSGTAPDPDEESEGCLSVPGEHFPLKRAEWVRVSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D A G A C+QHE DHL+G L++D L Sbjct: 121 DEFGNPVQFEATGWFARCMQHEYDHLDGKLYVDRL 155 >gi|227496282|ref|ZP_03926578.1| peptide deformylase [Actinomyces urogenitalis DSM 15434] gi|226834207|gb|EEH66590.1| peptide deformylase [Actinomyces urogenitalis DSM 15434] Length = 163 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 6/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+LR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MAYRDIRIIGDPVLRTQCEWITDIDDSVKQLVEDLLETVDEDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NP+I + D++ EGCLS+P KR+ + +D + Sbjct: 61 WNIDGEIG-----YILNPRIDELNFDEYQDGDEGCLSVPGLWYPTKRAWYARATGIDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + ++ + L+ C+QHE DHL G L++D L R R K + Sbjct: 116 KEVVVEGEELMGRCIQHECDHLEGHLYLDRLDRKNRAKAMKDL 158 >gi|108797549|ref|YP_637746.1| peptide deformylase [Mycobacterium sp. MCS] gi|119866635|ref|YP_936587.1| peptide deformylase [Mycobacterium sp. KMS] gi|126433171|ref|YP_001068862.1| peptide deformylase [Mycobacterium sp. JLS] gi|122977465|sp|Q1BEJ4|DEF_MYCSS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158513055|sp|A1UAD9|DEF_MYCSK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158513446|sp|A3PTZ4|DEF_MYCSJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|108767968|gb|ABG06690.1| peptide deformylase [Mycobacterium sp. MCS] gi|119692724|gb|ABL89797.1| peptide deformylase [Mycobacterium sp. KMS] gi|126232971|gb|ABN96371.1| peptide deformylase [Mycobacterium sp. JLS] Length = 197 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 14/163 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+LR + PI + +++ +LI ++ E M + +G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLRTETTPIPVGDDGSLPAEVADLIRDLYETMDAANGVGLAANQIGVS 60 Query: 56 YRLVVIDLQDHAHRKNPM--VFINPKIITFSD------DFSVYQEGCLSIPDYRADVKRS 107 R+ V D D R V INP ++ SD D +EGCLS+P + R+ Sbjct: 61 QRVFVYDCPDSRGRAGRRRGVVINP-VLETSDIPETMPDPDDDEEGCLSVPGEQFPTGRA 119 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + + GL A LQHE HL+G L++D L Sbjct: 120 DWARVTGLDADGSPITVEGTGLFARMLQHETGHLDGFLYLDRL 162 >gi|254498920|ref|ZP_05111625.1| peptide deformylase [Legionella drancourtii LLAP12] gi|254351905|gb|EET10735.1| peptide deformylase [Legionella drancourtii LLAP12] Length = 178 Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 8/154 (5%) Query: 6 LVIFPDPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V+ +P LR VS+PI E+ + D+ L + + +M +G+GLAA QIG+ R +V Sbjct: 8 VVLLGNPTLRMVSKPIDDEEFGTLDLNQLSERLFHMMKIKNGLGLAAPQIGINKRAIVFG 67 Query: 63 LQDHAHRKN--PM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + +H +K+ P+ + NP + SD EGCLS+ D R V R I R D Sbjct: 68 MDNHPVKKHLPPIPYTILFNPIFESTSDFIEEEYEGCLSVGDLRGKVPRHKNIIYRGYDV 127 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A L A +QHE DHLNGI+F+D ++ Sbjct: 128 DGNLIEREASDLHARVVQHETDHLNGIIFLDKVT 161 >gi|169837246|ref|ZP_02870434.1| peptide deformylase [candidate division TM7 single-cell isolate TM7a] Length = 238 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIGVLYRLVVID 62 P+ LR+ S+ I I ++ LI +M + LAAVQ+ L R+V++ Sbjct: 57 PNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVDKLERIVIVR 116 Query: 63 LQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + D+ + INP+II + + + EGCLS+ V R + V+ ++ + + Sbjct: 117 SEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRVKALNEDGKE 176 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I A+G LA LQHE+DH NGI+FIDH+ K+D K Sbjct: 177 IRIKAEGFLARVLQHEIDHTNGIVFIDHIKN-KKDAFYK 214 >gi|54294000|ref|YP_126415.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens] gi|53753832|emb|CAH15298.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens] gi|307609830|emb|CBW99347.1| hypothetical protein LPW_11251 [Legionella pneumophila 130b] Length = 172 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 10/149 (6%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DPILR+ + PI E +S + LI M +M +G+AA QIG+ R++V D+ Sbjct: 9 DPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFG-TDYT 67 Query: 68 HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R+ P INP + S + EGCL+ + +V R+ I D + Sbjct: 68 KRRKPEYPIPDTALINPSLRILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNR 127 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 A GL A LQHE+DHL+G LF+D + Sbjct: 128 ITKKASGLEARILQHEIDHLDGFLFLDRV 156 >gi|257095171|ref|YP_003168812.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047695|gb|ACV36883.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 177 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 10/151 (6%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-- 60 +P++ DP L R + P+E+ + ++ LI +M E M DG GLAA QIGV RLV+ Sbjct: 3 RPVLRMGDPRLARKAAPVEQFATPALHALIADMEETMRHLDGAGLAAPQIGVGLRLVIFG 62 Query: 61 IDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +D P+ V INP + S EGCLS+P R V R + +RY Sbjct: 63 VDRNPRYPEAEPVPRTVLINPVLFPLSSATEEAWEGCLSVPGLRGWVPR--WSRLRYTGF 120 Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILF 146 +A+ + I G A +QHE DHL+GIL+ Sbjct: 121 DARGRPIDRSVAGFHARVVQHECDHLDGILY 151 >gi|157127011|ref|XP_001654759.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes aegypti] gi|108884464|gb|EAT48689.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes aegypti] Length = 243 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 20/166 (12%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 DP+LR+ + P+E + S ++ L+ +M+ VM D +GLAA QIG+ +++V++ +D Sbjct: 60 DPVLRQTAAMVPVEAVTSPEVKYLVKHMVHVMRKYDCVGLAAPQIGISLKILVMEFEDRL 119 Query: 67 -AHRKNP------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 H N V INP++ + + + E C S+ Y +V R A + + Sbjct: 120 KKHYTNAEYKIKEMETLPLTVMINPEMKITNYEKISFPESCASVKGYSGEVARYAGVLLS 179 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 +D N Q + + G A QHE+DHLNG+++ D +KRD T Sbjct: 180 GLDENGQSKEMELKGWNARIAQHEMDHLNGVVYTD---VMKRDSFT 222 >gi|154497980|ref|ZP_02036358.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC 29799] gi|150272970|gb|EDN00127.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC 29799] Length = 175 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 7/154 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR-LV 59 M + ++ DP+L + + + + + L+D+M+E + + G+GLAA QIG+L R +V Sbjct: 12 MALRTIITKGDPVLSKKAHLVTNFDEKLAILLDDMVETLRDSGGVGLAAPQIGILRRVVV 71 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VI+ +D + +NP+II ++ V EGCLS+P V R V+ + Sbjct: 72 VINDEDQV-----IELVNPEIIA-TEGEQVGFEGCLSVPGRWGKVARPMKARVKAQNRQG 125 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + +GL A C HELDHL+G LF + +L Sbjct: 126 EWFEVEDEGLTARCFCHELDHLDGHLFTELTDKL 159 >gi|83941565|ref|ZP_00954027.1| peptide deformylase [Sulfitobacter sp. EE-36] gi|83847385|gb|EAP85260.1| peptide deformylase [Sulfitobacter sp. EE-36] Length = 131 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 2/130 (1%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M++ M + G+GLAA QIGV ++ V+D R + NP +I S + Y+E Sbjct: 1 MIDTMDAMPGVGLAAPQIGVSLQVAVVDASQA--RDKRIRLANPVVIDASAIMNEYEEAS 58 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++P A ++R + V+Y+D GL AT +QH++DHL G +F+D+LS+ + Sbjct: 59 PNLPGISAKIRRPRGVKVQYLDEQGARVTRDFVGLEATSVQHQIDHLAGKMFVDNLSKTR 118 Query: 155 RDMITKKMSK 164 RDM+ +K K Sbjct: 119 RDMLLRKARK 128 >gi|113478377|ref|YP_724438.1| peptide deformylase [Trichodesmium erythraeum IMS101] gi|110169425|gb|ABG53965.1| peptide deformylase [Trichodesmium erythraeum IMS101] Length = 177 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 9/168 (5%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 + ILR ++ + I + ++ LIDN++ + T+G+G+AA Q+ + L +I + + Sbjct: 11 NKILRYQAQTVNNILDQNVQQLIDNLIFTVIETNGVGIAAPQVSISDCLFIIASRPNIRY 70 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A + P+ INP++I+ S+D EGCLSIP R V R I V Y + + + Sbjct: 71 PNAPKMEPIAMINPRLISHSEDRVKGWEGCLSIPGIRGLVPRYRVINVEYTNREGKLERQ 130 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK--MSKLVQLRD 170 +A QHE DHL G++F+D + D+IT+ +++QLR+ Sbjct: 131 ELTDFVARIFQHEYDHLEGLVFLDRVESTT-DLITEDEYQKQIIQLRN 177 >gi|290955665|ref|YP_003486847.1| polypeptide deformylase [Streptomyces scabiei 87.22] gi|260645191|emb|CBG68277.1| polypeptide deformylase [Streptomyces scabiei 87.22] Length = 218 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + +++ ++ + + M++ G+GLAA Q+GV R+ VI+ Sbjct: 28 PIVAAGDPVLRRTAEPFDGQLDPALLARFVAALRATMHAAPGVGLAAPQVGVSLRIAVIE 87 Query: 63 LQDH-------AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + P F +NP + EGCLS+P ++A V R A + + Sbjct: 88 DPAPVPEEVRLARGRVPQPFRVLVNPAYEAVGPFRDAFFEGCLSVPGWQAVVARHARVRL 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R +D + G A +QHE DHLNG L++DH Sbjct: 148 RALDERGRAVDEEFSGWPARIVQHETDHLNGTLYLDH 184 >gi|111019610|ref|YP_702582.1| peptide deformylase [Rhodococcus jostii RHA1] gi|110819140|gb|ABG94424.1| peptide deformylase [Rhodococcus jostii RHA1] Length = 188 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 11/171 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I D L + + +S++ +D++ E + G GLAA Q+G + V Sbjct: 1 MAIRPILIAGDTRLTTPAVTVTAFDSELAAFVDDLHETNTAAHGAGLAANQVGDPRAIFV 60 Query: 61 IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL D A R NP++ +P+ T D + EGCLS+P R R+ + V + Sbjct: 61 YDLIDDARRHRGHVINPVLETSPRPETMPDPDDL--EGCLSVPGERYPTGRADWARVVGV 118 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMITKKM 162 D + + + G LA CLQHE DHL G L++D L R R MI ++ Sbjct: 119 DVDNKPISVEGTGYLARCLQHETDHLAGHLYLDRLIGRNHRAARKMIKQRQ 169 >gi|169827062|ref|YP_001697220.1| peptide deformylase [Lysinibacillus sphaericus C3-41] gi|168991550|gb|ACA39090.1| Peptide deformylase 1 [Lysinibacillus sphaericus C3-41] Length = 176 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 83/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P +L + +IN +++ L+D++ + M DG+G+AA QI + R+ + Sbjct: 13 MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L ++ + INP +I +D + EGCLS P +V+R +++ + D + Sbjct: 73 VEL---GEERDILEMINPTVIE-TDGAEIDIEGCLSFPGLYGEVERPSYVKIEACDREGR 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A G A + HE+DHL+G+LF + R+ Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFDSKIQRV 161 >gi|86738737|ref|YP_479137.1| peptide deformylase [Frankia sp. CcI3] gi|86565599|gb|ABD09408.1| peptide deformylase [Frankia sp. CcI3] Length = 230 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 4/166 (2%) Query: 6 LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + +P+L R + I + + ++ LID+M MY +G+GLAA QI V + V D Sbjct: 50 ITVVGEPVLHRPCKKITEFGTAELAALIDDMFTTMYGAEGVGLAANQIDVDAAVFVYDCT 109 Query: 65 DHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ +NP + EGCLS+P +V R VR D + Sbjct: 110 DEDGVRHVGHLVNPVLEEAPPAERRLVKGDEGCLSVPGAYMEVARLEHAAVRGQDQHGAP 169 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + G A CLQHE DHL G L++D LS R ++M + + Sbjct: 170 LRLEGTGYFARCLQHETDHLYGSLYLDRLSSRGRKKALREMEERTE 215 >gi|323692973|ref|ZP_08107194.1| peptide deformylase [Clostridium symbiosum WAL-14673] gi|323502974|gb|EGB18815.1| peptide deformylase [Clostridium symbiosum WAL-14673] Length = 150 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 7/139 (5%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D ILR+ + +++++ I ++D+ML+ + ++ +G LA Q+G+L RLVVI+ + Sbjct: 11 DEILRKRCKEVKEVDDKIRVMLDDMLDTLRHTENGAALATNQVGILKRLVVIE-----YC 65 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + +NPKII S EGCLS P + R +TV+ +D Q I+ +G Sbjct: 66 GELLKLVNPKIIGRSGTQECI-EGCLSFPGKFVNTIRPQKVTVQALDEYGQEVILTGEGE 124 Query: 130 LATCLQHELDHLNGILFID 148 +A C HEL+HL+G +F+D Sbjct: 125 MAKCYCHELEHLDGEIFLD 143 >gi|153001985|ref|YP_001367666.1| peptide deformylase [Shewanella baltica OS185] gi|151366603|gb|ABS09603.1| peptide deformylase [Shewanella baltica OS185] Length = 185 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHCPLALFIMASR 74 Query: 65 DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 75 PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + Q G +A QHE DHL GI ++ Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLE 163 >gi|116049053|ref|YP_792145.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|296390510|ref|ZP_06879985.1| peptide deformylase [Pseudomonas aeruginosa PAb1] gi|313106089|ref|ZP_07792346.1| putative peptide deformylase [Pseudomonas aeruginosa 39016] gi|115584274|gb|ABJ10289.1| probable peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|310878848|gb|EFQ37442.1| putative peptide deformylase [Pseudomonas aeruginosa 39016] Length = 179 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 12/160 (7%) Query: 11 DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 D L R+++P+ E + S+ + LID+M E M+ G+GLAA QIGV +LV+ + Sbjct: 10 DERLLRIAQPVPSELLGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE 69 Query: 68 HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P + +NP+I D+ EGCLS+P R V R +RY + Q Q Sbjct: 70 RYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHR--RIRYQGLDPQGQ 127 Query: 123 II--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I +G A +QHE DHL G L+ ++ + T+ Sbjct: 128 PIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTE 167 >gi|304410515|ref|ZP_07392133.1| peptide deformylase [Shewanella baltica OS183] gi|307304608|ref|ZP_07584358.1| peptide deformylase [Shewanella baltica BA175] gi|304350999|gb|EFM15399.1| peptide deformylase [Shewanella baltica OS183] gi|306912010|gb|EFN42434.1| peptide deformylase [Shewanella baltica BA175] Length = 185 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 75 PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + Q G +A QHE DHL GI ++ Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLE 163 >gi|218892912|ref|YP_002441781.1| peptide deformylase [Pseudomonas aeruginosa LESB58] gi|254234257|ref|ZP_04927580.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719] gi|126166188|gb|EAZ51699.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719] gi|218773140|emb|CAW28952.1| probable peptide deformylase [Pseudomonas aeruginosa LESB58] Length = 179 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 D L R+++P+ + ++ LID+M E M+ G+GLAA QIGV +LV+ + Sbjct: 10 DERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE 69 Query: 68 HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P + +NP+I D+ EGCLS+P R V R +RY + Q Q Sbjct: 70 RYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHR--RIRYQGLDPQGQ 127 Query: 123 II--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I +G A +QHE DHL G L+ ++ + T+ Sbjct: 128 PIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTE 167 >gi|313157220|gb|EFR56650.1| peptide deformylase [Alistipes sp. HGB5] Length = 229 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 9/147 (6%) Query: 13 ILRRVSRPI--EKINSDIMNLIDN--MLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHA 67 LRR + P+ E++ S+ L+ +L V D G+G+AA Q+GV RL+ + D Sbjct: 83 FLRRKAAPLGAEELRSEYFRLLKQGMLLTVRDPADEGVGIAAPQVGVSRRLIAVQRFDKP 142 Query: 68 HRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII-Y 125 P ++NP+I+ S + +EGCLS+P+ V R+ I +RY+D + Sbjct: 143 G--EPFECYVNPEIVGRSAARTAGREGCLSVPETSGTVLRADRIVLRYLDETTMRPVTDT 200 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 +G A QHE+DHL+G+LFID + R Sbjct: 201 VEGFTAVIFQHEIDHLDGVLFIDRMQR 227 >gi|168007592|ref|XP_001756492.1| predicted protein [Physcomitrella patens subsp. patens] gi|162692531|gb|EDQ78888.1| predicted protein [Physcomitrella patens subsp. patens] Length = 191 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 20/173 (11%) Query: 11 DPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+L + + +++ N S I I++M++VM + G+GLAA QIGV +++V++ Sbjct: 5 DPVLHKPAEEVKRENIGSSLIEKTINDMVDVMRAGPGVGLAAPQIGVPLQIIVLEDTKEL 64 Query: 63 ------LQDHAHRKNP---MVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITV 112 + A +++P +V INPKI + Y EGCLS+ YRA V+R + + V Sbjct: 65 MSYTSPEECEAQQRSPFDLLVIINPKIEKKEGRGTAYFFEGCLSVEGYRALVERHSEVEV 124 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + + + A G A LQHE DHL G L++D + +KR T + +L Sbjct: 125 TGLGRDGRPLHLTAKGWKARILQHEYDHLQGTLYVDKM--VKRTFRTTENLRL 175 >gi|126173131|ref|YP_001049280.1| peptide deformylase [Shewanella baltica OS155] gi|125996336|gb|ABN60411.1| peptide deformylase [Shewanella baltica OS155] Length = 185 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILGQTAITVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 75 PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + Q G +A QHE DHL GI ++ Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLE 163 >gi|312796239|ref|YP_004029161.1| peptide deformylase [Burkholderia rhizoxinica HKI 454] gi|312168014|emb|CBW75017.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI 454] Length = 177 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R+++P+++ N+ ++ LI +M E M + +G GLAA QIGV ++V+ +A Sbjct: 10 DPRLLRMAKPVDRFNTPELHQLIQDMFETMRAANGAGLAAPQIGVDLQVVIFGFGQNARY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP I S D EGCLS+P R V R + I D Q Sbjct: 70 PDAPAVPETVLINPMITPVSLDMEEGWEGCLSVPGLRGIVSRLSMIRYEGHDQYGQPIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 IAEGFHARVVQHECDHLIGRLY 151 >gi|307069643|ref|YP_003878120.1| peptide deformylase [Candidatus Zinderia insecticola CARI] gi|306482903|gb|ADM89774.1| peptide deformylase [Candidatus Zinderia insecticola CARI] Length = 144 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 89/140 (63%), Gaps = 2/140 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P+ L ++S+ I KIN+ I NLI M E+MY+ GIGL+A+QI ++ +ID+ + + Sbjct: 7 YPNKNLFKISKKIYKINNKIKNLIFYMSEIMYNLLGIGLSAIQINKKKKIFIIDISKNKN 66 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + +FIN KI+ S ++EGCLS P ++KRS +I + +++ + +I + Sbjct: 67 K--LKIFINSKILYLSKKKIYFKEGCLSFPGIYKNIKRSIYIKIIFINIKGKFKIYKSKN 124 Query: 129 LLATCLQHELDHLNGILFID 148 + + C+QHE++H+NG +F++ Sbjct: 125 IFSICIQHEIEHINGKIFLN 144 >gi|229086420|ref|ZP_04218596.1| Peptide deformylase [Bacillus cereus Rock3-44] gi|228696936|gb|EEL49745.1| Peptide deformylase [Bacillus cereus Rock3-44] Length = 124 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 4/128 (3%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M E M DG+GLAA Q+GV ++ V+D+ D + + INP I+ + V EGC Sbjct: 1 MHETMLVADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGE-QVGPEGC 56 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 LS P +V+R+ +I VR + + ++ AD LA +QHE+DHL+G+LF ++R Sbjct: 57 LSFPGLYGEVERAEYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLHGVLFTSKVTRYY 116 Query: 155 RDMITKKM 162 + ++M Sbjct: 117 EENELEEM 124 >gi|218188450|gb|EEC70877.1| hypothetical protein OsI_02402 [Oryza sativa Indica Group] gi|222618667|gb|EEE54799.1| hypothetical protein OsJ_02204 [Oryza sativa Japonica Group] Length = 155 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 14/130 (10%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH----------AHRKNP---MVFINPKI 80 M+ VM G+GLAA QIGV +++V+ D Q++ A + P +V INPK+ Sbjct: 1 MVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKL 60 Query: 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 T S +++ EGCLS+ YRA V+R + V +D N + + A G A LQHE DH Sbjct: 61 KTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDH 120 Query: 141 LNGILFIDHL 150 L G L++D + Sbjct: 121 LEGTLYVDTM 130 >gi|194902253|ref|XP_001980656.1| GG17275 [Drosophila erecta] gi|190652359|gb|EDV49614.1| GG17275 [Drosophila erecta] Length = 196 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP+LR+ + P E I+S +I +ID M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 14 DPVLRQRAEEVPPEDIDSMEINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 73 Query: 66 --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + RK P+ VFINP++ S + + EGC+S+ Y A V+R + +R Sbjct: 74 QEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKVRIR 133 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + +G A QHE+DHLNGI+++D + Sbjct: 134 GIGKLGTPSEMELEGWSARIAQHEVDHLNGIIYVDKM 170 >gi|317506338|ref|ZP_07964150.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974] gi|316255348|gb|EFV14606.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974] Length = 198 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 16/166 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+ I DP+L R + + + D++ L+++M E + ++ G+GLAA Q+GV RL Sbjct: 5 PIRIAGDPVLHRPTELVRLTDEGAAPPDVIVLLEDMYETLKASHGVGLAATQVGVGLRLF 64 Query: 60 VIDLQDHAHRKN---PMVFINPKIITFSD------DFSVYQEGCLSIPDYRADVKRSAFI 110 V D D K INP ++ SD D +EGCLS P R R+A+ Sbjct: 65 VYDCPDDTSGKRVSRKGEVINP-VLETSDIPEGMPDEDEDEEGCLSAPGLRYPTGRAAWA 123 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 V +D Q I GL A LQHE+ HL+G L++D L R R Sbjct: 124 KVTGVDRAGQPVEIEGTGLFARMLQHEVGHLDGKLYLDVLVGRWAR 169 >gi|293603522|ref|ZP_06685943.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] gi|292817958|gb|EFF77018.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] Length = 177 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 10/164 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++ DP L RV+ P+E+ ++ ++ LI +M E M + G+GLAA QIGV +LV+ Sbjct: 4 PILKMGDPRLLRVAPPVEQFDTPELHALIADMFETMAAAQGVGLAAPQIGVDLQLVIFGF 63 Query: 64 -QDHAHRKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ + P V NP I SD+ EGCLS+P R V R + +RY + Sbjct: 64 DRNERYPDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGQVPR--YRHIRYSGFD 121 Query: 119 AQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 ++I A+G A +QHE DHL G L+ + + T+ Sbjct: 122 PYGKLIEREAEGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165 >gi|300778831|ref|ZP_07088689.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] gi|300504341|gb|EFK35481.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] Length = 211 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 4/149 (2%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 L +S + ++ +I L+ M E + STDG +G+AA Q+G+ +++ + Q P Sbjct: 51 LLNISSEADPLDPNIAVLVKRMRESLLSTDGGVGIAAPQVGINRKIIWV--QRFDKEGAP 108 Query: 73 M-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + FINP I+ SD ++ EG LSIPD+R RS I + Y+D Q +G A Sbjct: 109 LEYFINPVIVWRSDLQNLGPEGDLSIPDFRDQFYRSKVIQLEYVDLKGQKYSEIVEGFTA 168 Query: 132 TCLQHELDHLNGILFIDHLSRLKRDMITK 160 QHE+DHL GIL D + K D K Sbjct: 169 VIFQHEIDHLFGILISDKKEKEKNDSYKK 197 >gi|114327146|ref|YP_744303.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] gi|114315320|gb|ABI61380.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] Length = 209 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%) Query: 12 PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--IDLQDHAH 68 P+L R + P+ + +I L +M+E M G+GLAA Q+ R+ V + + Sbjct: 40 PVLLRRADPVPDPTAPEIQRLALDMIETMIDAPGVGLAAPQVYQSLRMFVFRVPVSRGGE 99 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII--YA 126 +P V INP++ D+ + EGCLSIP +R +V R+ + VRY +I A Sbjct: 100 EVSPTVLINPELEWVGDEIQMCWEGCLSIPGFRGEVPRA--MRVRYRGIGLDGAVIEREA 157 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKR 155 G A +QHE DHL+GIL+ ++ L R Sbjct: 158 SGFHANVIQHEYDHLDGILYPMRMNDLGR 186 >gi|258593594|emb|CBE69935.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [NC10 bacterium 'Dutch sediment'] Length = 176 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 8/151 (5%) Query: 12 PILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 P+LR+V+ P+ E I ++I LID+M+E M +G+G+AA Q+ V ++ VI+ + + Sbjct: 12 PVLRQVAPPVRPETIREAEIQRLIDDMIETMREYEGVGIAAPQVHVSKQIAVIESKGNTR 71 Query: 69 RKN----PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+ V IN ++ + + EGCLS+ D+R R + + +D + Sbjct: 72 YPDAPEIPLTVLINLEVTPLAPELEDDWEGCLSLIDFRGQTPRYQQVRAKALDREGRSFE 131 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLK 154 A G A LQHE DHL G LFID + L+ Sbjct: 132 FVATGFHARVLQHERDHLLGKLFIDRMKSLE 162 >gi|256587795|gb|ACU98927.1| polypeptide deformylase [Propionibacterium jensenii] Length = 200 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 3/163 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + +P+L ++P+ + D+ LI +M + DG+GLAA Q+G+ L + + D Sbjct: 27 WSEPVLHASTQPVTDFDDDLHELIRDMFVTNAAADGVGLAATQVGLSLSLFIYNCPDDDG 86 Query: 69 RKNPMVFINPKII--TFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + NP++ T D + EGCLS P + R T D + Sbjct: 87 VVHKGAICNPQVTLPTGRDRNLVSVDEGCLSWPGGFQPLARPDLATCTGQDPWGTPLSVT 146 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 G A CLQHE DH NGI+F D LS+ R + ++ L L Sbjct: 147 GTGYFARCLQHETDHCNGIVFGDRLSKRSRRKLDEQHENLDHL 189 >gi|266624674|ref|ZP_06117609.1| peptide deformylase [Clostridium hathewayi DSM 13479] gi|288863453|gb|EFC95751.1| peptide deformylase [Clostridium hathewayi DSM 13479] Length = 121 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 5/107 (4%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G+GLAA Q+GVL ++VVID++D N V INP +IT + EGCLS+P Sbjct: 1 GVGLAAPQVGVLKQIVVIDVED----GNQYVLINP-VITETSGSQTGSEGCLSVPGKSGV 55 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R + V+ DC + +GLLA + HE DHL+G LF+D + Sbjct: 56 VTRPDHVKVKAFDCEMNEFELIGEGLLARAICHECDHLSGDLFVDKV 102 >gi|107100575|ref|ZP_01364493.1| hypothetical protein PaerPA_01001600 [Pseudomonas aeruginosa PACS2] gi|254239493|ref|ZP_04932815.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192] gi|126192871|gb|EAZ56934.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192] Length = 179 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 D L R+++P+ + ++ LID+M E M+ G+GLAA QIGV +LV+ + Sbjct: 10 DERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE 69 Query: 68 HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P + +NP+I D+ EGCLS+P R V R +RY + Q Q Sbjct: 70 RYPDAPAVPPTILLNPRITLLDDEMEEGWEGCLSVPGLRGAVSRHR--RIRYQGLDPQGQ 127 Query: 123 II--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I +G A +QHE DHL G L+ ++ + T+ Sbjct: 128 PIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTE 167 >gi|183601693|ref|ZP_02963063.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219683774|ref|YP_002470157.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|241190808|ref|YP_002968202.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196214|ref|YP_002969769.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219299|gb|EDT89940.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219621424|gb|ACL29581.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|240249200|gb|ACS46140.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250768|gb|ACS47707.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793797|gb|ADG33332.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis V9] Length = 160 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR PI +I + NL+ ++L+ + G++A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP ++ + EGCLS+P KR+ + VR MD + Sbjct: 61 YNIDGKIG-----YVLNP-VLEETRGEQYGDEGCLSLPKLWYKTKRADYARVRGMDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ DG++ LQHE DHL+G L+ID L + Sbjct: 115 EIVLEGDGIMGRMLQHETDHLDGHLYIDRLEK 146 >gi|329114617|ref|ZP_08243376.1| Peptide deformylase 1 [Acetobacter pomorum DM001] gi|326696097|gb|EGE47779.1| Peptide deformylase 1 [Acetobacter pomorum DM001] Length = 174 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 7/160 (4%) Query: 12 PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--IDLQDHAH 68 P+LR+ ++ + + DI LI +M E + + G+GLAA Q+ V RL + + L Sbjct: 12 PVLRQSAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLFIYSVPLARSEG 71 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +P INP + D+ + EGCLS+PD R +V R I D + Q Sbjct: 72 EDDPPLPVQALINPILTPVDDETQLRAEGCLSLPDLRGEVPRYKRIWYAGFDQHGQKVEG 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A G A +QHE+DHL+GIL+ ++ + + K++++ Sbjct: 132 MATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKEITR 171 >gi|126649799|ref|ZP_01722035.1| peptide deformylase [Bacillus sp. B14905] gi|126593518|gb|EAZ87463.1| peptide deformylase [Bacillus sp. B14905] Length = 185 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 9/115 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI---- 97 GIGLAA Q+ L R+ + LQD A + V INPKI++ S + + EGCLS+ Sbjct: 58 GIGLAANQVNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNV 117 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 P Y V R A ITV++ + + + + GL A QHELDHLNGI+F D ++ Sbjct: 118 PGY---VPRHARITVKFKTIDGEEKKMRLKGLSAIAFQHELDHLNGIMFYDRINE 169 >gi|52841298|ref|YP_095097.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148360273|ref|YP_001251480.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|296106683|ref|YP_003618383.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|52628409|gb|AAU27150.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148282046|gb|ABQ56134.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|295648584|gb|ADG24431.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] Length = 172 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 10/149 (6%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +PILR+ + PI E +S + LI M +M +G+AA QIG+ R++V D+ Sbjct: 9 NPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFGT-DYT 67 Query: 68 HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R+ P INP + S + EGCL+ + +V R+ I D + Sbjct: 68 KRRKPEYPIPDTALINPSLKILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNR 127 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 A GL A LQHE+DHL+G LF+D + Sbjct: 128 ITKKASGLEARILQHEIDHLDGFLFLDRV 156 >gi|330468108|ref|YP_004405851.1| peptide deformylase [Verrucosispora maris AB-18-032] gi|328811079|gb|AEB45251.1| peptide deformylase [Verrucosispora maris AB-18-032] Length = 165 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 7/144 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDH 66 I DP+LR S PI ++++ +L+ ++++ + G G+AA QIGV ++ V D Sbjct: 6 IIGDPVLRTPSEPITSFDAELRSLVTDLMDTLLGKPGRAGVAAPQIGVNAQVFVYDAD-- 63 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 HR + INP + SD+ EGCLSIP R+ T D + + I Sbjct: 64 GHRGH---MINP-TLDLSDELQDDDEGCLSIPGLYFPTPRALHATAHGFDQHGEPLTIAG 119 Query: 127 DGLLATCLQHELDHLNGILFIDHL 150 G LA LQHE DHL+G L++D L Sbjct: 120 SGFLARALQHETDHLHGRLYVDTL 143 >gi|78066802|ref|YP_369571.1| peptide deformylase [Burkholderia sp. 383] gi|77967547|gb|ABB08927.1| Peptide deformylase [Burkholderia sp. 383] Length = 177 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L V++P+E+ ++ ++ ++ +M E M+ +G GLAA QIG+ +L++ ++ Sbjct: 10 DPRLLEVAKPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLIIFGFGNNNRY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INPK+ D EGCLS+P R V R A + D + Sbjct: 70 PDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQYGEKIDR 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 ADG A +QHE DHL G L+ ++ R T+ Sbjct: 130 VADGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165 >gi|54297041|ref|YP_123410.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris] gi|53750826|emb|CAH12234.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris] Length = 172 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 10/149 (6%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DPILR+ + PI E +S + LI M +M +G+AA QIG+ R++V + + Sbjct: 9 DPILRQTAEPIAESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFSTE-YT 67 Query: 68 HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R+ P INP + S + EGCL+ + +V R+ I D + Sbjct: 68 KRRKPEYPIPDTALINPSLKILSKEIQNGYEGCLNCGEIMGEVPRAMEIEYSGFDIDGNK 127 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 A GL A LQHE+DHL+G LF+D + Sbjct: 128 ITKTASGLEARILQHEIDHLDGFLFLDRV 156 >gi|323448077|gb|EGB03980.1| hypothetical protein AURANDRAFT_33186 [Aureococcus anophagefferens] Length = 225 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 6/146 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLID---NMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V +P P LR +R + D+ M ++MY+ G+GLAA Q+GV RL+V + Sbjct: 54 IVAYPHPALR--ARNGDLAPGDLAAAAPLAARMFDLMYAAGGVGLAAPQVGVNARLMVFN 111 Query: 63 LQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D A + + NP+I+ S + V EGCLS P V R A++ V +D + Sbjct: 112 PSGDAARTGDEVALANPRIVAASAELEVGDEGCLSFPGMGGPVARHAWVEVAGLDLEGRA 171 Query: 122 QIIYADGLLATCLQHELDHLNGILFI 147 G A QHE DHL+G++++ Sbjct: 172 ISRAYAGWDARVFQHEYDHLDGVVYV 197 >gi|317402414|gb|EFV82986.1| peptide deformylase 1 [Achromobacter xylosoxidans C54] Length = 177 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68 DP L RV+ P+E+ ++ ++ LI++M E M + G+GLAA QIGV +LV+ ++ + Sbjct: 10 DPRLLRVAPPVERFDTPELHALIEDMFETMAAAQGVGLAAPQIGVDLQLVIFGFDRNERY 69 Query: 69 RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P V NP I SDD EGCLS+P R V R I + D + Sbjct: 70 PDAPAVPQTILCNPVITPLSDDMEDGWEGCLSVPGLRGLVPRYRHIRYQGKDPYGRDIDR 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ + + T+ Sbjct: 130 EAEGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165 >gi|33591309|ref|NP_878953.1| peptide deformylase [Bordetella pertussis Tohama I] gi|33598175|ref|NP_885818.1| peptide deformylase [Bordetella parapertussis 12822] gi|39931029|sp|Q7W0Q0|DEF1_BORPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|39931034|sp|Q7W4K0|DEF2_BORPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|33566733|emb|CAE38944.1| peptide deformylase [Bordetella parapertussis] gi|33570951|emb|CAE40418.1| peptide deformylase [Bordetella pertussis Tohama I] gi|332380711|gb|AEE65558.1| peptide deformylase [Bordetella pertussis CS] Length = 176 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 73/142 (51%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68 DP L RV+ P+E+ ++ ++ LID+M E M G+GLAA QIGV +LV+ + + + Sbjct: 10 DPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGFERNDRY 69 Query: 69 RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P V NP I SD+ EGCLS+P R V R I D Q Sbjct: 70 PDAPAVPRTILCNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPAGQRIER 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 EAEGFHARVVQHECDHLIGRLY 151 >gi|299534600|ref|ZP_07047932.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1] gi|298729973|gb|EFI70516.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1] Length = 185 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 22/160 (13%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRL 58 P LR + ++ + + L ++ML+ + ++ GIGLAA Q+ L R+ Sbjct: 13 PTLRTKAEEVKFPLTEETKKLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQVNSLQRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS----IPDYRADVKRSAFITV 112 + L+D A + V INPKI++ S + + EGCLS IP Y V R A ITV Sbjct: 73 FALHLKDEAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNIPGY---VPRHARITV 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ + + + + GL A QHELDHLNGI+F D ++ Sbjct: 130 KFKTIDGEEKKMRLKGLPAIAFQHELDHLNGIMFYDRINE 169 >gi|271967210|ref|YP_003341406.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270510385|gb|ACZ88663.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 159 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAV-QIGVLYRLV 59 M +P+ F DP+LR V+ P+ + ++ L+ ++ M + G A Q+GV R++ Sbjct: 1 MAVQPIRPFADPVLRTVAEPVTSFDRELRGLVKSLQATMRAGAGRAGLAAPQLGVSLRVL 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V +L A INP++ S+ V E CLS P ++RS +T R D Sbjct: 61 VYELDGRAGH-----LINPRLEP-SERKIVADEACLSAPGLWWPLERSYMVTARGRDMFG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A G+LA LQHE DHL+G+LFID L +R+ + S Sbjct: 115 KPVTVRALGMLARVLQHEADHLDGVLFIDRLPEDERERFLQTASS 159 >gi|183980768|ref|YP_001849059.1| polypeptide deformylase Def [Mycobacterium marinum M] gi|238690954|sp|B2HQN4|DEF_MYCMM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|183174094|gb|ACC39204.1| polypeptide deformylase Def [Mycobacterium marinum M] Length = 197 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 76/164 (46%), Gaps = 16/164 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ + +D+ LI M E M + G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60 Query: 56 YRLVVIDLQD----HAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKR 106 RL V D D AHR+ V INP + T D EGCLS+P R Sbjct: 61 LRLFVYDCADDRGKAAHRRG--VVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGR 118 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + V +D + GL A LQHE HL+G L++D L Sbjct: 119 ATWARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCL 162 >gi|118617060|ref|YP_905392.1| peptide deformylase [Mycobacterium ulcerans Agy99] gi|158512383|sp|A0PNK2|DEF_MYCUA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|118569170|gb|ABL03921.1| polypeptide deformylase Def [Mycobacterium ulcerans Agy99] Length = 197 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 76/164 (46%), Gaps = 16/164 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ + +D+ LI M E M + G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60 Query: 56 YRLVVIDLQD----HAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKR 106 RL V D D AHR+ V INP + T D EGCLS+P R Sbjct: 61 LRLFVYDCADDRRKAAHRRG--VVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGR 118 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + V +D + GL A LQHE HL+G L++D L Sbjct: 119 ATWARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCL 162 >gi|298491072|ref|YP_003721249.1| peptide deformylase ['Nostoc azollae' 0708] gi|298232990|gb|ADI64126.1| peptide deformylase ['Nostoc azollae' 0708] Length = 181 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 6/168 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++ +P+L + + ++ I + I LI +++ +Y + +G+AA Q+ +RL ++ Sbjct: 10 PIIQLGNPMLVQKAAWVDNIQDEHIQKLIGDLIFTVYQANSVGIAAPQVAESHRLFIVAS 69 Query: 64 QDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + A P INPKII +S + EGCLS+P R V R I + Y D N Sbjct: 70 RPNTRYPDAPEMKPTAMINPKIIAYSTEVIKGWEGCLSVPGIRGLVPRYQKIEIEYNDRN 129 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + Q +A QHE DHL G +F+D + + M + + V Sbjct: 130 GKIQKQELTDFIARIFQHEYDHLEGKVFLDRVESTEELMTESEYQQRV 177 >gi|295395559|ref|ZP_06805753.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] gi|294971578|gb|EFG47459.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] Length = 237 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 16/158 (10%) Query: 5 PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + + +S ++ L+ M M + G+GLAA Q+G+ RL V + Sbjct: 43 PIVTAGDPVLRTTTARFDGQIDDSTLLELLTAMRTTMLAAPGVGLAAPQVGISLRLAVCE 102 Query: 63 -----LQDHA--HRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +HA + P+ F INP +D + EGCLSIP Y+A V R +T+ Sbjct: 103 DPGTTSAEHAAARERTPLPFTALINPTYQPATDQLVAFYEGCLSIPGYQAVVARPRTVTL 162 Query: 113 RYMDCNAQHQIIYAD--GLLATCLQHELDHLNGILFID 148 D Q I D G + HE DHL+GIL++D Sbjct: 163 TAHD--HQGATITKDITGWAGRIIAHETDHLDGILYLD 198 >gi|187251316|ref|YP_001875798.1| N-formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191] gi|238058210|sp|B2KD65|DEF_ELUMP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|186971476|gb|ACC98461.1| N-Formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191] Length = 176 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 8/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +V + + ILR+ +P++ + + ++ +M + S G GL+A QIG+ +R+ Sbjct: 1 MAVRRIVKYGEDILRQKLKPVDFKTLEPQLDAILQDMHDTCMSFQGAGLSANQIGLTHRI 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +I + + A + V INP I++ +EGCLS+P +++R+ I V Sbjct: 61 AMIFIPEKTPKGEAQKFKRYVVINPVIVS-KKGCVTDEEGCLSLPGLWVEIERAESIVVH 119 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++ I+A G LA LQHE+DHL+G +FIDH + I K++ KL Sbjct: 120 CLNEKGLPVEIHAKGFLAKALQHEIDHLDGKIFIDHADPKLKPEIKKELKKL 171 >gi|270284179|ref|ZP_05965690.2| peptide deformylase [Bifidobacterium gallicum DSM 20093] gi|270277263|gb|EFA23117.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] Length = 169 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 6/164 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ + PDP+LR PI++I I +L+ ++L+ + GL+A QIGV R ++ Sbjct: 12 RPIRVVPDPVLRTQCDPIKEITPAIRHLVQDLLDTVDDPGRAGLSANQIGVPLRAFSYNI 71 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +NP ++ + EGCLS+P +R+ + R +D + + Sbjct: 72 DGKIG-----YILNP-VLEETRGEQYGDEGCLSVPGLWYKTRRADYARCRGIDLDGNEVV 125 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + DG++ +QHE DHL+G +++D L + +R K M + Q Sbjct: 126 LEGDGIMGRMIQHETDHLDGHVYLDRLEKEERRAALKYMREHQQ 169 >gi|307328424|ref|ZP_07607600.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306885997|gb|EFN17007.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 227 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 12/156 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+V P+LR+ + P E ++ +D ++ L+ M E M+S G+GLAA QIGV RL VI Sbjct: 21 PIVSAGVPVLRQPALPYEGQLAADQLDRLLAAMRETMHSAPGVGLAAPQIGVPLRLAVIE 80 Query: 62 -------DLQDHAHR-KNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++Q+ R P V +NP + + EGCLSIP ++A V R I + Sbjct: 81 DPAEVAAEVQEVRGRVPQPYRVLVNPGYEPVGHGRAAFFEGCLSIPGWQAVVSRPDRIRL 140 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R D + G A +QHE DHL+G+L++D Sbjct: 141 RGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176 >gi|289706123|ref|ZP_06502494.1| peptide deformylase [Micrococcus luteus SK58] gi|289557156|gb|EFD50476.1| peptide deformylase [Micrococcus luteus SK58] Length = 210 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 13/172 (7%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ ++ +P+L R + +E I+ +I LI++M + G+GLAA Q+GV R+ Sbjct: 5 RPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAAPQVGVGLRIFTWTF 64 Query: 64 QDHAHRKNPMVFINPKIITFSDDFS-------VYQEGCLSIPDYRADVKRSAFITVRYMD 116 D N INP ++T D + EGCLS+P ++R + + Sbjct: 65 PDSGDAPNVGHVINP-VLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLSGQR 123 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-----RLKRDMITKKMS 163 + + A+G A +QHE DHLNG L+++ L R KR ++++ Sbjct: 124 VDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEGKWQRRWKRAQRAERLN 175 >gi|193699878|ref|XP_001950597.1| PREDICTED: peptide deformylase, mitochondrial-like [Acyrthosiphon pisum] Length = 213 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 18/157 (11%) Query: 11 DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+LR + P+ EKI + ++ NLI M +M ++ IGLAA Q+G+ +++ VI Sbjct: 32 DPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIHFPRPS 91 Query: 63 ---------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 L+ H +N V+INP++ + + + E C S Y ADV R + + Sbjct: 92 HYFSKEEILLKGMEHVEN-QVWINPELKVLNHEKVTFNESCASFKGYSADVPRYKRVLLT 150 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D N + + + A A +QHE+DHLNG+++ D + Sbjct: 151 GIDENGEKKTLDAKEWTARIVQHEMDHLNGVMYSDRM 187 >gi|239917470|ref|YP_002957028.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|281414039|ref|ZP_06245781.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|239838677|gb|ACS30474.1| peptide deformylase [Micrococcus luteus NCTC 2665] Length = 213 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 13/172 (7%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ ++ +P+L R + +E I+ +I LI++M + G+GLAA Q+GV R+ Sbjct: 5 RPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAASQVGVGLRIFTWTF 64 Query: 64 QDHAHRKNPMVFINPKIITFSDDFS-------VYQEGCLSIPDYRADVKRSAFITVRYMD 116 D N INP ++T D + EGCLS+P ++R + + Sbjct: 65 PDSGDAPNVGHVINP-VLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLSGQR 123 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-----RLKRDMITKKMS 163 + + A+G A +QHE DHLNG L+++ L R KR ++++ Sbjct: 124 VDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEGKWQRRWKRAQRAERLN 175 >gi|229098336|ref|ZP_04229283.1| Peptide deformylase [Bacillus cereus Rock3-29] gi|229104429|ref|ZP_04235098.1| Peptide deformylase [Bacillus cereus Rock3-28] gi|229117353|ref|ZP_04246731.1| Peptide deformylase [Bacillus cereus Rock1-3] gi|228666253|gb|EEL21717.1| Peptide deformylase [Bacillus cereus Rock1-3] gi|228679127|gb|EEL33335.1| Peptide deformylase [Bacillus cereus Rock3-28] gi|228685234|gb|EEL39165.1| Peptide deformylase [Bacillus cereus Rock3-29] Length = 156 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLMADGVGLAAPQVGVSLQVAVVDVDD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF ++R Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|293343343|ref|XP_002725458.1| PREDICTED: peptide deformylase-like protein-like [Rattus norvegicus] gi|293355230|ref|XP_001073696.2| PREDICTED: peptide deformylase-like protein [Rattus norvegicus] Length = 231 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR V+ P+E ++ L++ +++VM +GL+A Q+GV +++V++ D Sbjct: 60 DPVLRTVAAPVEPKQLAGPELQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLEFPDRL 119 Query: 68 HRK-----------NPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R P V +NP + + EGC S+ + A V R + + Sbjct: 120 FRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 179 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D + + A G A +QHE+DHL+G LFID + Sbjct: 180 GLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKM 216 >gi|325680310|ref|ZP_08159870.1| peptide deformylase [Ruminococcus albus 8] gi|324108019|gb|EGC02275.1| peptide deformylase [Ruminococcus albus 8] Length = 155 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 4/138 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D L + +P+EK + + +D+M E + +G+GLAA Q+ +L R +ID+ D Sbjct: 11 DETLHKKCKPVEKFDEKLWTWLDDMRETLAQANGVGLAAPQVAILRRFCIIDVGD----G 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 INP+I S++ EGCLS P+ V R + + D N + + L Sbjct: 67 KVYELINPEITWKSEETQYVLEGCLSCPNEWGYVTRPKSVKFKAQDRNGEWYEMEVSDLF 126 Query: 131 ATCLQHELDHLNGILFID 148 A + HE HL+G LF + Sbjct: 127 AQAVCHETAHLDGHLFTE 144 >gi|114046443|ref|YP_736993.1| peptide deformylase [Shewanella sp. MR-7] gi|113887885|gb|ABI41936.1| peptide deformylase [Shewanella sp. MR-7] Length = 181 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL+ + + ++ + L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIAVVGEAILKEQAIVVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A NP+V +NP+I++ S D +EGCLS+P R + R I VRY + Sbjct: 75 PNERYPDAPLMNPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLAG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 Q Q G +A QHE DHL GI ++ Sbjct: 135 QWQRSELTGFIARIFQHEFDHLQGITLLE 163 >gi|297171900|gb|ADI22887.1| N-formylmethionyl-tRNA deformylase [uncultured Rhizobium sp. HF0500_35F13] Length = 194 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 1/143 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P P LRR + ++++++ I M E+MY +GIGLAA Q+ + R +++ Sbjct: 6 YPHPALRRKCSIVRRVDAELRETISEMYELMYEANGIGLAANQVDLPLRFFIVNTAGDRD 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +VFINP +++ + +EGCLSIP V R I V+ + Q Sbjct: 66 EGEELVFINP-VLSQPEGRGEEEEGCLSIPAVYGKVMRPTTIHVQAYNLEGQPFSAELSE 124 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LA +QHE DHL+G+LF D +S Sbjct: 125 TLARVVQHETDHLDGVLFTDRIS 147 >gi|289178547|gb|ADC85793.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12] Length = 163 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 6/145 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + PDP+LR PI +I + NL+ ++L+ + G++A QIGV R ++ Sbjct: 11 VVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFSYNIDGKI 70 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 +NP ++ + EGCLS+P KR+ + VR MD + ++ D Sbjct: 71 G-----YVLNP-VLEETRGEQYGDEGCLSLPKLWYKTKRADYARVRGMDLDGNEIVLEGD 124 Query: 128 GLLATCLQHELDHLNGILFIDHLSR 152 G++ LQHE DHL+G L+ID L + Sbjct: 125 GIMGRMLQHETDHLDGHLYIDRLEK 149 >gi|88855570|ref|ZP_01130234.1| polypeptide deformylase [marine actinobacterium PHSC20C1] gi|88815477|gb|EAR25335.1| polypeptide deformylase [marine actinobacterium PHSC20C1] Length = 163 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR V PI + LI +++E + GLAA QIGV R Sbjct: 1 MAVREIRLFGDPVLRSVCDPITVGDPHAAALIADLIESVQIPGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ INP + S D + EGCLS+P + R F V +D + Q Sbjct: 61 YNIDGEVG-----YIINPVLAEVSGDPELVDEGCLSVPGFYFLRSRYPFARVTGVDLDGQ 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMI 158 + +GL+A LQHE DHL+G L+I+ L S KR+ + Sbjct: 116 PVELSGEGLMAQALQHETDHLDGHLYIEGLDSETKREAM 154 >gi|227489313|ref|ZP_03919629.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227540902|ref|ZP_03970951.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227090686|gb|EEI25998.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227183162|gb|EEI64134.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 180 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 13/158 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI DP+L ++P+E S LID+M E MY+ +G+GLAA Q+G+ V D + Sbjct: 4 PIVICGDPVLHTPTQPVETPLSP--KLIDDMFETMYAANGVGLAANQVGLSQSFFVFDCE 61 Query: 65 DHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V +NP + T D EGCLS+P R+++ V D N Sbjct: 62 GVKG-----VVVNPVLETSEVPETMPDEEEDLEGCLSLPGEFFPTGRASWAKVTGTDENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID-HLSRLKRD 156 + LA C QHE HL G ++ D + R +R+ Sbjct: 117 NPVEFEGEDFLARCFQHECGHLKGQVYTDVTIGRYRRE 154 >gi|115757064|ref|XP_790987.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115961483|ref|XP_001180273.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 186 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 19/158 (12%) Query: 11 DPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR S P+ + + +LI M+ VM T G+GLAA QIGV ++ V++ + Sbjct: 14 DPVLRGKSDPVHPQDIRTKEFQDLIQKMVGVMRKTGGVGLAAPQIGVAQQVFVMEFTE-K 72 Query: 68 HRKN--------------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 H K P+ VF+NP + SD+ V EGCLS+ + A R+ + + Sbjct: 73 HMKGFSEEIQKAREMEVVPLKVFVNPSLKILSDNQVVLTEGCLSLTGFTAATPRAHEVEI 132 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + G A LQHE DHL G L+ID + Sbjct: 133 TGLNEKGEPVTWRVCGYPARILQHEYDHLQGTLYIDRM 170 >gi|295839268|ref|ZP_06826201.1| peptide deformylase [Streptomyces sp. SPB74] gi|295827384|gb|EDY42650.2| peptide deformylase [Streptomyces sp. SPB74] Length = 250 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 2/154 (1%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 + RR + + L+ +M MY +G GLAA Q+GV RL V D D ++ Sbjct: 69 LARRCAEATVFGTPGLARLVADMFLTMYLAEGAGLAANQVGVDLRLFVYDRFDDEGARHV 128 Query: 73 MVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +N I + ++ + EGCLS+P R + R+ +R +D + + I G Sbjct: 129 GHVLNRVIDEAASGRALVEDVEGCLSVPGARHGLARADRTVLRGVDRDGRPVTIEGTGYF 188 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A CLQHE DHLNG++++D L + R + M++ Sbjct: 189 ARCLQHETDHLNGMVYVDRLGKRARRAVLADMAE 222 >gi|94970942|ref|YP_592990.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] gi|94552992|gb|ABF42916.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] Length = 208 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 17/162 (10%) Query: 6 LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 LV +P+LR + P+ E + +I LI++M + + G+GLAA Q+GV +L +I+ Sbjct: 17 LVQAGEPVLRTPAEPLAIKEIASREIARLIEDMRDTLEDAPGVGLAAPQVGVPIQLAIIE 76 Query: 63 LQDHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 + + P V INP + + EGCLS+ + A V R Sbjct: 77 DRAEYSKDIPTEQLAERGRVPVPFHVIINPVLKPLGKSQVDFFEGCLSVAGFIAVVPRYR 136 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D N + I A G A LQHE+DHLNG L++D + Sbjct: 137 KVRVTCLDENGAQRRIEASGWYARILQHEIDHLNGTLYVDRM 178 >gi|302340678|ref|YP_003805884.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] gi|301637863|gb|ADK83290.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] Length = 174 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 7/149 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVID 62 + ++ F DP LR + + + + + ID + ++ G LAA QI +L ++VVID Sbjct: 8 ETIIRFGDPRLRVLCSEVAVFHKGLHDKIDCIARTLHQHGGGAALAAPQIALLKQIVVID 67 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + INP+I+ S S+ EGCLS+P + V+R I V Y D + Sbjct: 68 YLGEYYE-----LINPQIVEASGS-SIDYEGCLSLPGFWGQVERHQRIKVSYQDRFGEVY 121 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + A +A C QHE+DHL+G+LFID +S Sbjct: 122 SVEAHDRMARCFQHEIDHLSGVLFIDRMS 150 >gi|160876705|ref|YP_001556021.1| peptide deformylase [Shewanella baltica OS195] gi|160862227|gb|ABX50761.1| peptide deformylase [Shewanella baltica OS195] gi|315268905|gb|ADT95758.1| peptide deformylase [Shewanella baltica OS678] Length = 185 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A P+V +NP+II S + +EGCLS+P R ++ R I VRY + Sbjct: 75 PNERYPDAPNMAPVVVVNPQIIHASSELVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + Q G +A QHE DHL GI ++ Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLE 163 >gi|169826942|ref|YP_001697100.1| peptide deformylase 2 [Lysinibacillus sphaericus C3-41] gi|168991430|gb|ACA38970.1| Peptide deformylase 2 [Lysinibacillus sphaericus C3-41] Length = 185 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 9/115 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI---- 97 GIGLAA Q+ L R+ + LQD A + V INPKI++ S + + EGCLS+ Sbjct: 58 GIGLAANQVNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNV 117 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 P Y V R A ITV++ + + + + GL A QHELDHLNG++F D ++ Sbjct: 118 PGY---VPRHARITVKFKTIDGEEKKMRLKGLPAIAFQHELDHLNGVMFYDRINE 169 >gi|291456898|ref|ZP_06596288.1| peptide deformylase [Bifidobacterium breve DSM 20213] gi|291382175|gb|EFE89693.1| peptide deformylase [Bifidobacterium breve DSM 20213] Length = 161 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++LE + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP I+ EGCLS+P +R+ + VR +D + + Sbjct: 61 YNIDGKVG-----YVLNP-ILEEKSGEQYGDEGCLSVPGLWYKTRRAEYARVRGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ G++ LQHE DHL+G +++D L + +R K M + Sbjct: 115 EVVLEGTGIMGRMLQHECDHLDGHVYLDRLEKEERRAAMKYMRE 158 >gi|162457307|ref|YP_001619674.1| peptide deformylase [Sorangium cellulosum 'So ce 56'] gi|161167889|emb|CAN99194.1| peptide deformylase [Sorangium cellulosum 'So ce 56'] Length = 191 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 8/149 (5%) Query: 11 DPILRRVSRPI--EKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 +P+LR+ +R + E+++S M ID+++E M +G G+AA Q+ V R+ +++QD Sbjct: 11 NPVLRQRAREVTEEELSSPAMQAFIDDLVETMRDANGAGIAATQVHVPVRIFAVEVQDNP 70 Query: 66 -HAHRKN-PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + ++ N P+ V +NP I + + EGCLS+P+ R V R+ I + +D + Sbjct: 71 RYPYKPNIPLTVVVNPVIEPLTQETFENYEGCLSVPNLRGVVDRTTEIRLTGLDREGRPI 130 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 GL A QHE DH++G+LF+D + Sbjct: 131 DRVVRGLSAGTFQHEKDHVDGVLFVDRVK 159 >gi|194741016|ref|XP_001952985.1| GF17444 [Drosophila ananassae] gi|190626044|gb|EDV41568.1| GF17444 [Drosophila ananassae] Length = 238 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 17/159 (10%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR+ + P+ + ++ ++ +++ M+ V+ D +G+AA QIGV R++ ++ + Sbjct: 56 DPVLRQKAAPVPQEHILSPEVEAIVEKMVRVLRKYDCVGIAAPQIGVSLRIIAMEFKGSI 115 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ P VFINP + + + EGC+S+ + ADV+R +++ Sbjct: 116 RKELPEAVYQARQMTELPLTVFINPVLTVTNYTKLKHPEGCMSVRGFSADVERFEGVSIS 175 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + N + G A QHE+DHL+G L+ DH+ R Sbjct: 176 GSNGNGVQNELELSGWNARIAQHEMDHLDGKLYTDHMDR 214 >gi|70934701|ref|XP_738539.1| formylmethionine deformylase [Plasmodium chabaudi chabaudi] gi|56514841|emb|CAH86596.1| formylmethionine deformylase, putative [Plasmodium chabaudi chabaudi] Length = 132 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 1/112 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V++P+P+LR+ S + + ++ +L+ M + MY + GIGL+A Q+ + R++V + L Sbjct: 20 IVMYPNPVLRQKSEEVLYFDDNLKDLVRRMFKTMYESKGIGLSAPQVNISKRIIVWNALY 79 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + KN VFINP II S + EGCLS P+ A V+R A +++ Y D Sbjct: 80 EKRDEKNERVFINPSIIQESAVKNKLVEGCLSFPNIEAKVERPAIVSISYYD 131 >gi|117919351|ref|YP_868543.1| peptide deformylase [Shewanella sp. ANA-3] gi|117611683|gb|ABK47137.1| peptide deformylase [Shewanella sp. ANA-3] Length = 176 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 5/162 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL++ + + + + +L M+ M G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILKQQADEVRDFDEKLSHLASQMVASMVEAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A +P+V +NP+I++ S + +EGCLS+P R + R I VRY D Sbjct: 75 PNERYPDAPLMDPVVVVNPQILSASAELVSGEEGCLSVPGQRFSIWRHQTIVVRYQDLAG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 Q G +A QHE DHL GI ++ ++ ++ ++ Sbjct: 135 HWQQTELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMARR 176 >gi|330807956|ref|YP_004352418.1| peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376064|gb|AEA67414.1| peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 179 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 72/150 (48%), Gaps = 8/150 (5%) Query: 20 PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN------P 72 P E +S ++ LID+M + M S G+GLAA QIGV +LV+ + H+ R Sbjct: 21 PAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFE-HSERYPDAEAVPQ 79 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + INP I EGCLS+P R V+R I D + + YA G A Sbjct: 80 TILINPLITPLGPQMEEGFEGCLSVPGLRGAVERYQDIRYEGFDPKGEPIVRYASGFHAR 139 Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +QHE DHL G L+ +S + T+ M Sbjct: 140 VVQHECDHLIGRLYPSRISDFSKFGFTEVM 169 >gi|291240947|ref|XP_002740376.1| PREDICTED: peptide deformylase-like [Saccoglossus kowalevskii] Length = 270 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 17/155 (10%) Query: 11 DPILRRVSRPIEK--INSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+LR + P++ I S+ +N LI+ M+ VM +GL+A QIGV +++V++ Sbjct: 98 DPVLRGKAVPVDPSDIGSNSINQLIEQMVAVMRRGQTVGLSAPQIGVGCQVIVMEYKKKH 157 Query: 63 --------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +Q ++ P+ +FINP++ D EGC SI Y A V+R + + Sbjct: 158 MQMYSPAIIQQRGIKEFPLKIFINPQMKVLDDTKVTQLEGCESIKGYSAYVERYHAVEIT 217 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + + Q ADG A +QHE+DHL G L+ID Sbjct: 218 GLSPTGEMQSWKADGFPARIIQHEMDHLQGRLYID 252 >gi|319949867|ref|ZP_08023877.1| polypeptide deformylase [Dietzia cinnamea P4] gi|319436469|gb|EFV91579.1| polypeptide deformylase [Dietzia cinnamea P4] Length = 223 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 22/172 (12%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP L + P+ + +I +L+ ++ + M + +G+GLAA QIGV R+ V Sbjct: 1 MAVRPIVILGDPALHAPTEPVTESPEEIADLVRDLYDTMDAANGVGLAANQIGVRKRVFV 60 Query: 61 IDLQDHAHRKNPMV-----------------FINPKIITFS-----DDFSVYQEGCLSIP 98 D D V INP + T D EGCLS+P Sbjct: 61 YDCPDLDTEDGEGVSREEVEARGGWLNRRGCVINPVLETSEIPETMPDPEDDLEGCLSVP 120 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 R+ + V D + + + GL A CLQHE+ HL+G ++ DHL Sbjct: 121 GVNFPRGRAWWARVTGTDEHGEPVSVEGYGLFARCLQHEVGHLDGFVYTDHL 172 >gi|163855075|ref|YP_001629373.1| peptide deformylase [Bordetella petrii DSM 12804] gi|163258803|emb|CAP41102.1| peptide deformylase [Bordetella petrii] Length = 177 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L RV++P+ + ++ ++ L+ +M E M G+GLAA QIGV +LV+ + + Sbjct: 10 DPRLLRVAQPVGQFDTPELHELVADMFETMVHAKGVGLAAPQIGVDLQLVIFGFEHNERY 69 Query: 70 KN----PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P+ V NP I SD+ EGCLS+P R V R I R D + Q Sbjct: 70 PDAPPVPLTVLCNPVITPRSDEREDGWEGCLSVPGLRGLVPRYRHIRYRGFDPHGQPIER 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ + + T+ Sbjct: 130 EAEGFHARVVQHECDHLIGRLYPSRIEDFSKFGFTE 165 >gi|75762657|ref|ZP_00742499.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489856|gb|EAO53230.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 156 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDVDD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF ++R Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|24645728|ref|NP_731495.1| CG31373 [Drosophila melanogaster] gi|23170932|gb|AAN13481.1| CG31373 [Drosophila melanogaster] Length = 196 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP+LR+ + P E I+S +I +ID M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 14 DPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 73 Query: 66 --------HAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + RK + VFINP++ S + + EGC+S+ Y A+V+R + +R Sbjct: 74 QEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKVRIR 133 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + +G A QHE+DHLNG +++D + Sbjct: 134 GIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRM 170 >gi|225706662|gb|ACO09177.1| Peptide deformylase, mitochondrial precursor [Osmerus mordax] Length = 248 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 DP+LR + P++ + S++ +I M++VM +GL+A Q+GV R++ ++ + Sbjct: 77 DPVLRSHAAPVDPSAVLGSEVQEVIGAMVKVMRKLQCVGLSAPQVGVPLRILALEFPESM 136 Query: 67 ------AHRKN------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A R+ P+ VFINP++ ++QE C SI + A V R + V Sbjct: 137 LKDVSPAAREARGVAVVPLRVFINPQLRVLDRRTVLFQEACESISGFSARVPRYLEVEVS 196 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ A+ G A LQHE+DHL+G+L+IDH+ Sbjct: 197 GLNEKAEPVTWEVSGWPARILQHEMDHLDGVLYIDHM 233 >gi|66771605|gb|AAY55114.1| IP07194p [Drosophila melanogaster] Length = 206 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP+LR+ + P E I+S +I +ID M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 24 DPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 83 Query: 66 --------HAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + RK + VFINP++ S + + EGC+S+ Y A+V+R + +R Sbjct: 84 QEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKVRIR 143 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + +G A QHE+DHLNG +++D + Sbjct: 144 GIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRM 180 >gi|218899020|ref|YP_002447431.1| peptide deformylase [Bacillus cereus G9842] gi|228902371|ref|ZP_04066527.1| Peptide deformylase [Bacillus thuringiensis IBL 4222] gi|228909692|ref|ZP_04073515.1| Peptide deformylase [Bacillus thuringiensis IBL 200] gi|228966817|ref|ZP_04127861.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str. T04001] gi|218544444|gb|ACK96838.1| peptide deformylase [Bacillus cereus G9842] gi|228792916|gb|EEM40474.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str. T04001] gi|228849981|gb|EEM94812.1| Peptide deformylase [Bacillus thuringiensis IBL 200] gi|228857269|gb|EEN01773.1| Peptide deformylase [Bacillus thuringiensis IBL 4222] Length = 156 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D Sbjct: 6 IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDVDD 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP I+ + V EGCLS P +V+R+ +I VR + + ++ Sbjct: 66 DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A+G LA +QHE+DHL+G+LF ++R Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|52141515|ref|YP_085313.1| peptide deformylase [Bacillus cereus E33L] gi|51974984|gb|AAU16534.1| polypeptide deformylase [Bacillus cereus E33L] Length = 184 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 22/161 (13%) Query: 11 DPILRRVSR----PIEKINSD--------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57 DPILR+V+ P K +++ ++N D + YS GIGLAA QIG+ + Sbjct: 12 DPILRKVAEEVVIPASKEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|320012174|gb|ADW07024.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331] Length = 169 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 65/140 (46%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 P L + + L+++M MY+ +G+GLAA QIGV R+ V D D ++ Sbjct: 7 PALHSPCDDVTDFGPSLARLVEDMFATMYAANGVGLAANQIGVPLRVFVYDCPDDDEVRH 66 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +NP ++ D EGCLS+P A R V + I G A Sbjct: 67 LGHLVNPVLVEADGDTVRGPEGCLSLPGIEAGTPRFDRAVVEGRTVAGEPVRITGTGWFA 126 Query: 132 TCLQHELDHLNGILFIDHLS 151 CLQHE DHL+G ++ D L+ Sbjct: 127 RCLQHECDHLDGRVYTDRLT 146 >gi|31791607|ref|NP_854100.1| peptide deformylase [Mycobacterium bovis AF2122/97] gi|39930833|sp|Q7U206|DEF_MYCBO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|31617193|emb|CAD93300.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE) [Mycobacterium bovis AF2122/97] Length = 197 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 17/171 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ + +D+ LI M + M + +G+GLAA QIG Sbjct: 1 MTVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60 Query: 56 YRLVVIDLQD----HAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKR 106 RL V D A R+ V INP + T D EGCLS+P R Sbjct: 61 LRLFVYDCAADRAMTARRRG--VVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGR 118 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRD 156 + + V +D + I GL A LQHE HL+G L++D L R R+ Sbjct: 119 AKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARN 169 >gi|121610540|ref|YP_998347.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] gi|121555180|gb|ABM59329.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] Length = 186 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 74/143 (51%), Gaps = 7/143 (4%) Query: 11 DPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R++RP+ +++ + L+ +ML+ M+ +G GLAA QIGV +LVV +H R Sbjct: 11 DPRLLRIARPVTGFDTEALHGLVRDMLDTMHDANGAGLAAPQIGVDLQLVVFGSGEHNPR 70 Query: 70 ---KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+ V +NP I D EGCLS+P R V R + I +D Sbjct: 71 YPGRPPVPLTVLLNPVITPLGQDEKEDWEGCLSVPGLRGMVPRWSRIRYTGVDPYGHPID 130 Query: 124 IYADGLLATCLQHELDHLNGILF 146 DG A +QHE DHL G L+ Sbjct: 131 RSVDGFHARVVQHECDHLVGKLY 153 >gi|15607570|ref|NP_214943.1| peptide deformylase [Mycobacterium tuberculosis H37Rv] gi|15839816|ref|NP_334853.1| peptide deformylase [Mycobacterium tuberculosis CDC1551] gi|121636343|ref|YP_976566.1| peptide deformylase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660194|ref|YP_001281717.1| peptide deformylase [Mycobacterium tuberculosis H37Ra] gi|148821625|ref|YP_001286379.1| peptide deformylase [Mycobacterium tuberculosis F11] gi|167970754|ref|ZP_02553031.1| peptide deformylase [Mycobacterium tuberculosis H37Ra] gi|215402181|ref|ZP_03414362.1| peptide deformylase [Mycobacterium tuberculosis 02_1987] gi|215409945|ref|ZP_03418753.1| peptide deformylase [Mycobacterium tuberculosis 94_M4241A] gi|215425650|ref|ZP_03423569.1| peptide deformylase [Mycobacterium tuberculosis T92] gi|215429251|ref|ZP_03427170.1| peptide deformylase [Mycobacterium tuberculosis EAS054] gi|215444525|ref|ZP_03431277.1| peptide deformylase [Mycobacterium tuberculosis T85] gi|218752062|ref|ZP_03530858.1| peptide deformylase [Mycobacterium tuberculosis GM 1503] gi|219556250|ref|ZP_03535326.1| peptide deformylase [Mycobacterium tuberculosis T17] gi|224988815|ref|YP_002643502.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253797353|ref|YP_003030354.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435] gi|254230779|ref|ZP_04924106.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis C] gi|254363393|ref|ZP_04979439.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis str. Haarlem] gi|254549376|ref|ZP_05139823.1| peptide deformylase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185296|ref|ZP_05762770.1| peptide deformylase [Mycobacterium tuberculosis CPHL_A] gi|260199427|ref|ZP_05766918.1| peptide deformylase [Mycobacterium tuberculosis T46] gi|260203579|ref|ZP_05771070.1| peptide deformylase [Mycobacterium tuberculosis K85] gi|289441809|ref|ZP_06431553.1| polypeptide deformylase [Mycobacterium tuberculosis T46] gi|289445969|ref|ZP_06435713.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A] gi|289552678|ref|ZP_06441888.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605] gi|289568345|ref|ZP_06448572.1| polypeptide deformylase def [Mycobacterium tuberculosis T17] gi|289573014|ref|ZP_06453241.1| polypeptide deformylase def [Mycobacterium tuberculosis K85] gi|289744125|ref|ZP_06503503.1| peptide deformylase [Mycobacterium tuberculosis 02_1987] gi|289748913|ref|ZP_06508291.1| polypeptide deformylase def [Mycobacterium tuberculosis T92] gi|289752458|ref|ZP_06511836.1| peptide deformylase [Mycobacterium tuberculosis EAS054] gi|289756502|ref|ZP_06515880.1| polypeptide deformylase def [Mycobacterium tuberculosis T85] gi|289760545|ref|ZP_06519923.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis GM 1503] gi|294995934|ref|ZP_06801625.1| peptide deformylase [Mycobacterium tuberculosis 210] gi|297632913|ref|ZP_06950693.1| peptide deformylase [Mycobacterium tuberculosis KZN 4207] gi|297729888|ref|ZP_06959006.1| peptide deformylase [Mycobacterium tuberculosis KZN R506] gi|298523906|ref|ZP_07011315.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis 94_M4241A] gi|306774525|ref|ZP_07412862.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001] gi|306779274|ref|ZP_07417611.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002] gi|306783063|ref|ZP_07421385.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003] gi|306787430|ref|ZP_07425752.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004] gi|306791982|ref|ZP_07430284.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005] gi|306796169|ref|ZP_07434471.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006] gi|306802026|ref|ZP_07438694.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008] gi|306806238|ref|ZP_07442906.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007] gi|306966434|ref|ZP_07479095.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009] gi|306970629|ref|ZP_07483290.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010] gi|307078354|ref|ZP_07487524.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011] gi|307082913|ref|ZP_07492026.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012] gi|313657217|ref|ZP_07814097.1| peptide deformylase [Mycobacterium tuberculosis KZN V2475] gi|6225255|sp|P96275|DEF_MYCTU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512922|sp|A1KFQ1|DEF_MYCBP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158513357|sp|A5TZF5|DEF_MYCTA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767595|sp|C1AKA5|DEF_MYCBT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|221046693|pdb|3E3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Peptide Deformylase In Complex With Inhibitor gi|1817695|emb|CAB06569.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE) [Mycobacterium tuberculosis H37Rv] gi|13879947|gb|AAK44667.1| peptide deformylase [Mycobacterium tuberculosis CDC1551] gi|121491990|emb|CAL70453.1| Probable polypeptide deformylase def [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599838|gb|EAY58848.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis C] gi|134148907|gb|EBA40952.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis str. Haarlem] gi|148504346|gb|ABQ72155.1| peptide deformylase [Mycobacterium tuberculosis H37Ra] gi|148720152|gb|ABR04777.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis F11] gi|224771928|dbj|BAH24734.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253318856|gb|ACT23459.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435] gi|289414728|gb|EFD11968.1| polypeptide deformylase [Mycobacterium tuberculosis T46] gi|289418927|gb|EFD16128.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A] gi|289437310|gb|EFD19803.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605] gi|289537445|gb|EFD42023.1| polypeptide deformylase def [Mycobacterium tuberculosis K85] gi|289542098|gb|EFD45747.1| polypeptide deformylase def [Mycobacterium tuberculosis T17] gi|289684653|gb|EFD52141.1| peptide deformylase [Mycobacterium tuberculosis 02_1987] gi|289689500|gb|EFD56929.1| polypeptide deformylase def [Mycobacterium tuberculosis T92] gi|289693045|gb|EFD60474.1| peptide deformylase [Mycobacterium tuberculosis EAS054] gi|289708051|gb|EFD72067.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis GM 1503] gi|289712066|gb|EFD76078.1| polypeptide deformylase def [Mycobacterium tuberculosis T85] gi|298493700|gb|EFI28994.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis 94_M4241A] gi|308216874|gb|EFO76273.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001] gi|308327718|gb|EFP16569.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002] gi|308332080|gb|EFP20931.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003] gi|308335895|gb|EFP24746.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004] gi|308339472|gb|EFP28323.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005] gi|308343337|gb|EFP32188.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006] gi|308347247|gb|EFP36098.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007] gi|308351177|gb|EFP40028.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008] gi|308355830|gb|EFP44681.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009] gi|308359750|gb|EFP48601.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010] gi|308363691|gb|EFP52542.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011] gi|308367344|gb|EFP56195.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012] gi|323721101|gb|EGB30163.1| polypeptide deformylase def [Mycobacterium tuberculosis CDC1551A] gi|326902255|gb|EGE49188.1| polypeptide deformylase def [Mycobacterium tuberculosis W-148] gi|328457139|gb|AEB02562.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 4207] Length = 197 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 17/171 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ + +D+ LI M + M + +G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60 Query: 56 YRLVVIDLQD----HAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKR 106 RL V D A R+ V INP + T D EGCLS+P R Sbjct: 61 LRLFVYDCAADRAMTARRRG--VVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGR 118 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRD 156 + + V +D + I GL A LQHE HL+G L++D L R R+ Sbjct: 119 AKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARN 169 >gi|302540288|ref|ZP_07292630.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302457906|gb|EFL20999.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 12/156 (7%) Query: 5 PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V P+LR+ + P + + + L+ M E M++ G+GLAA QIGV RL VI+ Sbjct: 21 PIVSAGLPVLRQAALPYDGQLPDGQLDRLLRAMRETMHNAPGVGLAAPQIGVPLRLAVIE 80 Query: 63 LQD-------HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + P V +NP D + + EGCLS+P ++A V R I + Sbjct: 81 DPAEVATEVREARGRVPQPYRVLVNPSYEPVGDARAAFFEGCLSVPGWQAVVSRPERIRL 140 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R D + G A +QHE DHL+G+L++D Sbjct: 141 RGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176 >gi|86140860|ref|ZP_01059419.1| putative polypeptide deformylase protein [Leeuwenhoekiella blandensis MED217] gi|85832802|gb|EAQ51251.1| putative polypeptide deformylase protein [Leeuwenhoekiella blandensis MED217] Length = 219 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 79/155 (50%), Gaps = 13/155 (8%) Query: 11 DPILRRVSRPIEKINSD-----IMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDL 63 D +L R P E + D +MNLID M + + G G+AA Q+G+L R+ + Sbjct: 57 DSLLLRT--PSEAVTVDPKDTVLMNLIDRMYTTVRDSLSLGAGIAAPQVGILKRIAWV-- 112 Query: 64 QDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF-ITVRYMDCNAQH 121 Q P V INP I +S EGCLSIP R + A+ I V Y +A H Sbjct: 113 QRFDKEGFPFEVIINPVIKQYSKKKQDCPEGCLSIPGRRDTLSTRAYAILVEYDKPDASH 172 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 +I + A QHE+DHLNGIL++DHL + +D Sbjct: 173 EIEMVEDFTAVVFQHEIDHLNGILYLDHLKQEIKD 207 >gi|23008036|ref|ZP_00049646.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 145 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 80/133 (60%), Gaps = 5/133 (3%) Query: 34 NMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQE 92 ++L+ + + +GL A IG RLVVI LQ D H +++P ++ S + + + E Sbjct: 8 DVLDTLGAVSAMGLTAPHIGRPERLVVIRLQPDEPH----ATYVDPVVVWASAERASHPE 63 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 G +S+P V+R A + VRY D + + A+GL A CLQHE+D L+GI +ID L+R Sbjct: 64 GSVSMPGVVEPVERPARVRVRYRDLDGETHEEEAEGLRAACLQHEIDQLDGIFWIDRLTR 123 Query: 153 LKRDMITKKMSKL 165 L+RD + K+ +KL Sbjct: 124 LRRDRVLKRFAKL 136 >gi|229104578|ref|ZP_04235242.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-28] gi|228678825|gb|EEL33038.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-28] Length = 184 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYR 57 DPILR V+ + EK + + +I+ M E GIGLAA QIGV + Sbjct: 12 DPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|300704236|ref|YP_003745839.1| peptide deformylase [Ralstonia solanacearum CFBP2957] gi|299071900|emb|CBJ43229.1| Peptide deformylase [Ralstonia solanacearum CFBP2957] Length = 177 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 10/151 (6%) Query: 4 KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P++ D L RV++P+++ + ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 3 RPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFG 62 Query: 63 L-QDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + P V INP I SD+ EGCLS+P R V R + +RY Sbjct: 63 FDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPR--YTRLRYTGF 120 Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILF 146 + I A+G A +QHE DHL GIL+ Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILY 151 >gi|229098440|ref|ZP_04229384.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-29] gi|228684963|gb|EEL38897.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-29] Length = 182 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYR 57 DPILR V+ + EK + + +I+ M E GIGLAA QIGV + Sbjct: 9 DPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 68 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 69 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 125 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 126 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166 >gi|195055504|ref|XP_001994657.1| GH17361 [Drosophila grimshawi] gi|193892420|gb|EDV91286.1| GH17361 [Drosophila grimshawi] Length = 234 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 17/159 (10%) Query: 11 DPILR-RVSR-PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61 DP+LR R + P + +NS +I ++D M+ V+ D +G+AA QIGV R++ + Sbjct: 52 DPVLRDRAAEVPADCVNSKEIHAIVDQMVHVLRKFDCVGIAAPQIGVSLRIIAMEFRRSI 111 Query: 62 --DLQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 DL D +++ M V INP++ + + EGC+S+ + A+V+R + + Sbjct: 112 KKDLSDATYKRRQMSELPLTVLINPQLTVTNYTKHKHPEGCMSVRGFSAEVERYEGVKLS 171 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D H + G A QHE++HL+G L+ DH+ R Sbjct: 172 GLDRQGVHSELELSGWNARIAQHEMEHLDGKLYTDHMDR 210 >gi|296135817|ref|YP_003643059.1| peptide deformylase [Thiomonas intermedia K12] gi|295795939|gb|ADG30729.1| peptide deformylase [Thiomonas intermedia K12] Length = 177 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA-H 68 DP L RV++P+ K ++ ++ LI ++ E M + G+GLAA QIGV +V+ A + Sbjct: 11 DPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVVIFGFSQSARY 70 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V INP+I D EGCLS+P R V R I R MD Sbjct: 71 PEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRGMDAYGNPIDR 130 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 A+G A +QHE DHL G L+ + R T ++ Sbjct: 131 EAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168 >gi|41410016|ref|NP_962852.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis K-10] gi|254777164|ref|ZP_05218680.1| peptide deformylase [Mycobacterium avium subsp. avium ATCC 25291] gi|81700308|sp|Q73T03|DEF_MYCPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|41398849|gb|AAS06468.1| Def [Mycobacterium avium subsp. paratuberculosis K-10] Length = 197 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++P+ + +D+ LI +M + M + G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTQPVPVGDDGSLPADLGKLIADMYDTMDAAHGVGLAANQIGVG 60 Query: 56 YRLVVIDLQDHAH--RKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D + V +NP + T D EGCLS+P R++ Sbjct: 61 LRVFVYDCADDRGLTERRRGVVVNPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAS 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + I GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGNPVSIEGHGLFARMLQHETGHLDGFLYLDRL 162 >gi|42783070|ref|NP_980317.1| peptide deformylase [Bacillus cereus ATCC 10987] gi|206978074|ref|ZP_03238958.1| peptide deformylase [Bacillus cereus H3081.97] gi|217961461|ref|YP_002340029.1| peptide deformylase [Bacillus cereus AH187] gi|222097423|ref|YP_002531480.1| peptide deformylase [Bacillus cereus Q1] gi|229140704|ref|ZP_04269252.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST26] gi|229198091|ref|ZP_04324802.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1293] gi|42738998|gb|AAS42925.1| polypeptide deformylase [Bacillus cereus ATCC 10987] gi|206743701|gb|EDZ55124.1| peptide deformylase [Bacillus cereus H3081.97] gi|217068218|gb|ACJ82468.1| peptide deformylase [Bacillus cereus AH187] gi|221241481|gb|ACM14191.1| polypeptide deformylase [Bacillus cereus Q1] gi|228585389|gb|EEK43496.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1293] gi|228642776|gb|EEK99059.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST26] gi|324327875|gb|ADY23135.1| peptide deformylase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 184 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 82/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 DPILR V+ + + + N + M+E V+ S D GIGLAA QIG+ R Sbjct: 12 DPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKR 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|195157966|ref|XP_002019865.1| GL12632 [Drosophila persimilis] gi|194116456|gb|EDW38499.1| GL12632 [Drosophila persimilis] Length = 196 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP+LR+++ P E I + +I ++D M++V+ D +G+AA Q+GV R++V++ ++ Sbjct: 14 DPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGVPLRIIVMEFREGK 73 Query: 66 --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +A RK P+ VFINP++ S + + EGC+S+ Y A V+R + ++ Sbjct: 74 QEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGYSAQVERYERVRIK 133 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + +G A QHE+DHLNG +++D + Sbjct: 134 GIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRM 170 >gi|187477209|ref|YP_785233.1| peptide deformylase [Bordetella avium 197N] gi|115421795|emb|CAJ48306.1| peptide deformylase [Bordetella avium 197N] Length = 177 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L RV+ P+E+ S ++ LID+M + M G+GLAA QIGV +LV+ + + Sbjct: 10 DPRLLRVAAPVERFGSAELKQLIDDMFDTMAYAHGVGLAAPQIGVDLQLVIFGFERNPRY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V NP I SD+ EGCLS+P R V R +I + + Sbjct: 70 PDAPAVPKTVLCNPVITPLSDEMEDGWEGCLSVPGLRGLVPRYQYIRYQGFAPDGTAIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A G A +QHE DHL G L+ Sbjct: 130 EASGFHARVVQHECDHLIGRLY 151 >gi|119910219|ref|XP_001255524.1| PREDICTED: peptide deformylase-like [Bos taurus] gi|119936845|ref|XP_001251630.1| PREDICTED: peptide deformylase-like [Bos taurus] gi|297485396|ref|XP_002694953.1| PREDICTED: peptide deformylase-like [Bos taurus] gi|296478169|gb|DAA20284.1| peptide deformylase-like [Bos taurus] Length = 250 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP LR V+ P+E ++ L++ +++VM +GL+A Q+GV +++ ++ + Sbjct: 79 DPALRAVAAPVEPAQLAGPELQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLALEFPETL 138 Query: 66 ---------HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A + P VF+NP + + EGC S+ + A V R + + Sbjct: 139 FRACAPRVREARQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 198 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D + + A G A +QHE+DHL G LFID + Sbjct: 199 GLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 235 >gi|162455696|ref|YP_001618063.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56'] gi|161166278|emb|CAN97583.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56'] Length = 203 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 27/187 (14%) Query: 5 PLVIFPDPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V+ +LR+ + P+ E+I + + +L+ M+ VM G+GLAA QIGV +++V+ Sbjct: 5 PIVLAGRAVLRKPAAPVPPEEIGTKRLKHLVSTMVSVMRKAPGVGLAAPQIGVDQQVIVL 64 Query: 62 -DLQDHAHRKNP-------------MVFINPKIITFSDDF--------SVYQEGCLSIPD 99 D ++ R P V INP + + + + EGCLS+P Sbjct: 65 EDSEELMSRLTPGQRAERGRVPFRLRVIINPTLRVLAPSLPDAAGAGRATFFEGCLSVPG 124 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 Y A V+R + V +D + + A G A LQHE+DHL G L++D + + R + Sbjct: 125 YMALVERDLSVEVSGVDEDGKEVRWEATGWPARILQHEVDHLRGTLYVDRM--VTRSFCS 182 Query: 160 KKMSKLV 166 + +KL+ Sbjct: 183 NEEAKLL 189 >gi|207743249|ref|YP_002259641.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein [Ralstonia solanacearum IPO1609] gi|206594646|emb|CAQ61573.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein [Ralstonia solanacearum IPO1609] Length = 177 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 10/151 (6%) Query: 4 KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P++ D L RV++P+++ + ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 3 RPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFG 62 Query: 63 L-QDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + P V INP I SD+ EGCLS+P R V R + +RY Sbjct: 63 FDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPR--YTRLRYTGY 120 Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILF 146 + I A+G A +QHE DHL GIL+ Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILY 151 >gi|30021955|ref|NP_833586.1| peptide deformylase [Bacillus cereus ATCC 14579] gi|206971120|ref|ZP_03232071.1| peptide deformylase [Bacillus cereus AH1134] gi|218232337|ref|YP_002368668.1| peptide deformylase [Bacillus cereus B4264] gi|228940955|ref|ZP_04103514.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954144|ref|ZP_04116172.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960083|ref|ZP_04121747.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228973884|ref|ZP_04134460.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980474|ref|ZP_04140784.1| Peptide deformylase [Bacillus thuringiensis Bt407] gi|229047554|ref|ZP_04193144.1| Peptide deformylase [Bacillus cereus AH676] gi|229071365|ref|ZP_04204588.1| Peptide deformylase [Bacillus cereus F65185] gi|229081122|ref|ZP_04213632.1| Peptide deformylase [Bacillus cereus Rock4-2] gi|229111338|ref|ZP_04240891.1| Peptide deformylase [Bacillus cereus Rock1-15] gi|229129143|ref|ZP_04258116.1| Peptide deformylase [Bacillus cereus BDRD-Cer4] gi|229146438|ref|ZP_04274809.1| Peptide deformylase [Bacillus cereus BDRD-ST24] gi|229152066|ref|ZP_04280261.1| Peptide deformylase [Bacillus cereus m1550] gi|229180143|ref|ZP_04307487.1| Peptide deformylase [Bacillus cereus 172560W] gi|229192036|ref|ZP_04319006.1| Peptide deformylase [Bacillus cereus ATCC 10876] gi|296504362|ref|YP_003666062.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|39931054|sp|Q819U0|DEF1_BACCR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|78100858|pdb|1WS0|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus Cereus gi|78100859|pdb|1WS1|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus Cereus gi|29897511|gb|AAP10787.1| Polypeptide deformylase [Bacillus cereus ATCC 14579] gi|206733892|gb|EDZ51063.1| peptide deformylase [Bacillus cereus AH1134] gi|218160294|gb|ACK60286.1| peptide deformylase [Bacillus cereus B4264] gi|228591587|gb|EEK49436.1| Peptide deformylase [Bacillus cereus ATCC 10876] gi|228603352|gb|EEK60829.1| Peptide deformylase [Bacillus cereus 172560W] gi|228631415|gb|EEK88049.1| Peptide deformylase [Bacillus cereus m1550] gi|228637071|gb|EEK93530.1| Peptide deformylase [Bacillus cereus BDRD-ST24] gi|228654380|gb|EEL10245.1| Peptide deformylase [Bacillus cereus BDRD-Cer4] gi|228672114|gb|EEL27405.1| Peptide deformylase [Bacillus cereus Rock1-15] gi|228702166|gb|EEL54642.1| Peptide deformylase [Bacillus cereus Rock4-2] gi|228711819|gb|EEL63771.1| Peptide deformylase [Bacillus cereus F65185] gi|228723801|gb|EEL75156.1| Peptide deformylase [Bacillus cereus AH676] gi|228779294|gb|EEM27551.1| Peptide deformylase [Bacillus thuringiensis Bt407] gi|228785909|gb|EEM33912.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799599|gb|EEM46552.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805464|gb|EEM52055.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818791|gb|EEM64857.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|296325414|gb|ADH08342.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|326941636|gb|AEA17532.1| peptide deformylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 156 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 81/143 (56%), Gaps = 4/143 (2%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V+D+ D + Sbjct: 10 PNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDVDDDTGK 69 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + INP I+ + V EGCLS P +V+R+ +I VR + + ++ A+G Sbjct: 70 ---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGF 125 Query: 130 LATCLQHELDHLNGILFIDHLSR 152 LA +QHE+DHL+G+LF ++R Sbjct: 126 LARAIQHEIDHLHGVLFTSKVTR 148 >gi|227872147|ref|ZP_03990517.1| peptide deformylase [Oribacterium sinus F0268] gi|227842005|gb|EEJ52265.1| peptide deformylase [Oribacterium sinus F0268] Length = 164 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 4/141 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 D IL + + I+++ +LI +M E MY +G+GLAA Q+G+L +L V+D+ D Sbjct: 11 DSILEKKCKEIKEMTDKTRDLIQDMFETMYDANGVGLAAPQVGILKQLFVVDIGDGVR-- 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 V INPKI ++ +EGCLS+P V R I + +D N + + A G L Sbjct: 69 --YVCINPKIEAVGEEEQCGEEGCLSVPGKEGKVTRPMNIHLEALDQNMEPFSLDASGFL 126 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A HE DHL G+L+ + + Sbjct: 127 ARAFCHEYDHLQGVLYTEKVE 147 >gi|323704619|ref|ZP_08116197.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536081|gb|EGB25854.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum LX-11] Length = 117 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 67/103 (65%), Gaps = 6/103 (5%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DPIL + ++ +EKI+ I+ ++++M E MY+ DG+GLAA QIG+L RLVV+D+ + Sbjct: 11 DPILYKKAKQVEKIDEHILMILEDMAETMYNADGVGLAANQIGILRRLVVVDVGE----- 65 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + INP+II + + EGCLS+P+ +V R A + V+ Sbjct: 66 GLIELINPEII-LEEGEQIGVEGCLSVPNVTGEVIRPAKVRVK 107 >gi|294632567|ref|ZP_06711127.1| peptide deformylase [Streptomyces sp. e14] gi|292835900|gb|EFF94249.1| peptide deformylase [Streptomyces sp. e14] Length = 215 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ +++ L V M + G+GLAAVQ+GV R+ VI+ Sbjct: 25 PIVSAGDPVLRRPAEPYDGQLAPELLARFVQALRVTMRTAPGVGLAAVQVGVGLRIAVIE 84 Query: 63 LQDH-------AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + P F +NP + + EGCLS+P ++A V R A + + Sbjct: 85 DPAPVPEEVRVARERVPQPFRVLVNPSYEPVGARRAAFFEGCLSVPGWQAVVARHAEVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R D + + G A +QHE DHL+G+L++D Sbjct: 145 RARDEHGRAVDEVFTGWPARIVQHETDHLDGVLYVDR 181 >gi|229117467|ref|ZP_04246841.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-3] gi|228665972|gb|EEL21440.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-3] Length = 181 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYR 57 DPILR V+ + EK + + +I+ M E GIGLAA QIGV + Sbjct: 9 DPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 68 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 69 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 125 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 126 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166 >gi|308177432|ref|YP_003916838.1| peptide deformylase [Arthrobacter arilaitensis Re117] gi|307744895|emb|CBT75867.1| peptide deformylase [Arthrobacter arilaitensis Re117] Length = 213 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 12/156 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V P+LR+ + E ++ +D++ L++ M + MY G+GLAA Q+G+ ++ V++ Sbjct: 28 PIVQLGHPVLRQQAVAYENQLPTDLLEELLEAMRQTMYDAPGVGLAAPQVGIPLQIAVLE 87 Query: 63 ----LQDHA---HRKNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + A + P+ + NP+ ++ S+ +V+ EGCLS ++ V R A I+ Sbjct: 88 DLYPIPEEAATMREREPLEYFEIFNPEYVSASEREAVFYEGCLSFDGFQGVVTRPADISA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 Y D + Q G A +QHE DHL+G ++ID Sbjct: 148 TYKDRDGQEITRSFSGWQARIVQHEADHLSGTVYID 183 >gi|113971372|ref|YP_735165.1| peptide deformylase [Shewanella sp. MR-4] gi|113886056|gb|ABI40108.1| peptide deformylase [Shewanella sp. MR-4] Length = 181 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL+ + + ++ + L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIAVVGEAILKEQAVEVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A +P+V +NP+I++ S D +EGCLS+P R + R I VRY + Sbjct: 75 PNERYPDAPLMDPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLAG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 Q Q G +A QHE DHL GI ++ Sbjct: 135 QWQRSELTGFIARIFQHEFDHLQGITLLE 163 >gi|114564402|ref|YP_751916.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] gi|114335695|gb|ABI73077.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] Length = 170 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 1 MVKKPLVIFP---DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M KPL+ + IL +++ P+ + + L DNML M + +G+G+AA Q+ Sbjct: 1 MQPKPLLSIATTGEQILTQIAEPVTVFDDALHTLADNMLSTMLNANGVGIAATQVFSNAA 60 Query: 58 LVVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + ++ + A P V INP+I++ S EGCLSIP R + R + I V Sbjct: 61 MFIMASNPNERYPDAPSMPPTVVINPQILSASAATEADVEGCLSIPGQRLSIARHSEIEV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 +Y + Q G +A QHE DHL GI ++ ++ + ++ + Sbjct: 121 QYQSLDGQLHQQTLTGFVARIFQHEYDHLQGITLLERVNIMTPQILVPQ 169 >gi|300691609|ref|YP_003752604.1| peptide deformylase [Ralstonia solanacearum PSI07] gi|299078669|emb|CBJ51327.1| Peptide deformylase [Ralstonia solanacearum PSI07] Length = 170 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 12/145 (8%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D L RV++P+++ + ++ LI++M + M + G GLAA QIGV ++V+ D + R Sbjct: 3 DSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRSER 61 Query: 70 KN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 V INP I SD+ EGCLS+P R V R + +RY + Q Sbjct: 62 YPDAPAVPKTVLINPTIEPLSDEMEDGWEGCLSVPGLRGVVPR--YTRLRYTGYDQHGQA 119 Query: 124 I--YADGLLATCLQHELDHLNGILF 146 I A+G A +QHE DHL GIL+ Sbjct: 120 IDRIAEGFHARVVQHECDHLQGILY 144 >gi|328949669|ref|YP_004367004.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] gi|328449993|gb|AEB10894.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] Length = 178 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 12/152 (7%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVM-----YSTDGIGLAAVQIGVLYRLVVIDLQ 64 +P+LR VS P+E S ++ +++++ + + +T G G+AA QIGVL R+V ++L Sbjct: 11 NPLLREVSEPVEDPTSPEVARIVEDLRDTLAHWRATTTYGRGIAAPQIGVLKRIVFLNLP 70 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P INP I S + V + CLS V+R +TVRY D + Sbjct: 71 E----LGPWPLINPTITAKSPETMVVWDACLSFLSIFMQVERHREVTVRYQDLRGTWHEV 126 Query: 125 YADGL--LATCLQHELDHLNGILFIDHLSRLK 154 A L+ LQHE+DHL+GIL ID + +K Sbjct: 127 RAGEAHNLSELLQHEIDHLDGILAIDRVVDVK 158 >gi|317124743|ref|YP_004098855.1| peptide deformylase [Intrasporangium calvum DSM 43043] gi|315588831|gb|ADU48128.1| peptide deformylase [Intrasporangium calvum DSM 43043] Length = 181 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + +F DP+LR + + + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAIKDIRLFGDPVLRTPAAEVIDFDKELRVLVQDLQDTMLDAPGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + H NP+ + SD+ EGCLSIP + +R+ + + + + Sbjct: 61 YWVDGIVGHLVNPL-------LALSDEEQEGPEGCLSIPGVTVETRRALSVVAKGQNMHG 113 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + ++ LLA +QHE DHL+GILF+D L R Sbjct: 114 EPVVLEGTELLARAVQHETDHLDGILFVDRLDPAAR 149 >gi|116670982|ref|YP_831915.1| peptide deformylase [Arthrobacter sp. FB24] gi|116611091|gb|ABK03815.1| peptide deformylase [Arthrobacter sp. FB24] Length = 190 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 7/152 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA Q+GV RL V Sbjct: 5 PITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRLFVYKFA 64 Query: 65 DHAHRKNPMVFINPKIITFSD------DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + V +NP ++T S D EGCLS P + +KR+ + V+ D + Sbjct: 65 NDDGVPPAGVVVNP-VLTLSKVSGALPDPDEEVEGCLSFPGGQYPLKRAEWARVQGFDGD 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 A A +QHE DHL+G L+++ L Sbjct: 124 GNPVDFEATEWFARIIQHEYDHLDGKLYVNRL 155 >gi|120401747|ref|YP_951576.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1] gi|158513127|sp|A1T320|DEF_MYCVP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|119954565|gb|ABM11570.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1] Length = 197 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +P+ I DP+L + P+ + +D+ +LI +M + M + G+GLAA QIGV Sbjct: 1 MAVRPIRIVGDPVLHTATEPVPVGADGSLPADLADLITDMYDTMDAAHGVGLAANQIGVS 60 Query: 56 YRLVVIDLQDHAHR--KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D + + V INP + T D EGCLS+P R+ Sbjct: 61 KRVFVYDCADERKKTTRRRGVVINPVLETSEIPETMPDPEDDDEGCLSVPGESFPTGRAD 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + + L A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGTPITLEGTDLFARMLQHETGHLDGFLYLDRL 162 >gi|325529284|gb|EGD06233.1| peptide deformylase [Burkholderia sp. TJI49] Length = 177 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68 DP L V+RP+E+ ++ ++ ++ +M E M+ +G GLAA QIGV ++++ ++ + Sbjct: 10 DPRLLEVARPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGVGLQIIIFGFGSNNRY 69 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V INPK+ D EGCLS+P R V R A + D Sbjct: 70 PEAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGAKLDR 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ ++ R T+ Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165 >gi|145596781|ref|YP_001161078.1| formylmethionine deformylase [Salinispora tropica CNB-440] gi|145306118|gb|ABP56700.1| formylmethionine deformylase [Salinispora tropica CNB-440] Length = 187 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 4/152 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62 +P+V P +L R R ++ + L +++ M + G +GLAA QIGV R+ +D Sbjct: 24 RPVVSAPAAVLSRAGRDVDPTAEQTVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAVD 83 Query: 63 LQDH--AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MDCNA 119 + H A + + ++ + + +EGC+S+PD DVKR+ + V + Sbjct: 84 VTGHPKASTGHGAFVLCNAVVVEASRWKAGREGCMSVPDLTGDVKRAGRLVVEGDLPGTG 143 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + D A LQHE+DH G+LF+D ++ Sbjct: 144 KTVRLVTDAFEARALQHEIDHCAGLLFLDRVA 175 >gi|195571951|ref|XP_002103964.1| GD20712 [Drosophila simulans] gi|194199891|gb|EDX13467.1| GD20712 [Drosophila simulans] Length = 196 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP+LR+ + P E I+S +I +ID M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 14 DPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 73 Query: 66 --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + RK P+ VFINP++ S + + EGC+S+ Y A V+R + +R Sbjct: 74 QEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKVRIR 133 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + +G A QHE+DHLNG +++D + Sbjct: 134 GIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKM 170 >gi|167586850|ref|ZP_02379238.1| peptide deformylase [Burkholderia ubonensis Bu] Length = 176 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Query: 11 DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68 DP L +++P+E+ ++ +N L+ +M E M+ +G GLAA QIGV ++++ ++ + Sbjct: 10 DPRLLEIAQPVERFDTPALNELVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGNNNRY 69 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V INPK+ D EGCLS+P R V R A I D Sbjct: 70 PEAPPVPETVLINPKVEFMPPDMEEGWEGCLSVPGMRGVVSRYAKIRYSGFDQFGAKIDR 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 A+G A +QHE DHL G L+ ++ R T Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFT 164 >gi|170781748|ref|YP_001710080.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] gi|169156316|emb|CAQ01464.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] Length = 163 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 86/166 (51%), Gaps = 9/166 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +F DP+L+ VS I +I+ + L++++L+ + G+AA QIGV Sbjct: 1 MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGV------ 54 Query: 61 IDLQDHAHRKNPMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L+ ++ P +NP I + + EGCLS+P R + +D + Sbjct: 55 -NLRAFSYNVGPAFGYVLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVISGLDLD 113 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I G+LA QHE+DHL+G++++D L + +R K++ + Sbjct: 114 GKPVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159 >gi|218899130|ref|YP_002447541.1| peptide deformylase [Bacillus cereus G9842] gi|228902480|ref|ZP_04066634.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 4222] gi|228966997|ref|ZP_04128035.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar sotto str. T04001] gi|218546057|gb|ACK98451.1| peptide deformylase [Bacillus cereus G9842] gi|228792731|gb|EEM40295.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar sotto str. T04001] gi|228857224|gb|EEN01730.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 4222] Length = 184 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYR 57 DPILR V+ + EK + + +I+ M E GIGLAA QIGV + Sbjct: 12 DPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|323341737|ref|ZP_08081970.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464162|gb|EFY09355.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 190 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 98/183 (53%), Gaps = 22/183 (12%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +V+ P+P+LR P+ ++ + N ++NML+ + + G+AA QI Sbjct: 9 IVLDPNPVLREKCEPVSFPLSEEDRNTLENMLQYVRDSRDPELAEKYNLQPANGIAAPQI 68 Query: 53 GVLYRL--VVIDLQD-HAHRKN-PMVFINPKIITFSDDFSV--YQEGCLSI-PDYRADVK 105 GV ++ +V+DL+D H + K +NPKI++ S Y EGCLSI DY V+ Sbjct: 69 GVAKQMTALVVDLEDKHGNVKTVEYALVNPKIVSNSVKQCALSYGEGCLSIRKDYPGLVR 128 Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 RS I V D +I I A +LA LQHE+DHLNG+LF DH+ K + +K K Sbjct: 129 RSQRIKVLAYDMITDQRIEIVAKDILAIVLQHEIDHLNGVLFYDHIDS-KDPWMAEKGLK 187 Query: 165 LVQ 167 +++ Sbjct: 188 IIE 190 >gi|266624813|ref|ZP_06117748.1| peptide deformylase [Clostridium hathewayi DSM 13479] gi|288863310|gb|EFC95608.1| peptide deformylase [Clostridium hathewayi DSM 13479] Length = 149 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 80/143 (55%), Gaps = 7/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D ILR+ + +++++ I ++++M + +++T +G +AA Q+G+L RLVVID+ Sbjct: 11 DEILRKKCKEVKEVDDRIREILNDMTDTLHATPNGAAIAANQVGILKRLVVIDMG----- 65 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 M +NP I+ + + EGCLS P+ R + V+ +D N + + Sbjct: 66 TGLMKLVNPVIVEQTGEQDCI-EGCLSFPEKYGRTIRPQTVIVKALDENGEVVTLTGIDE 124 Query: 130 LATCLQHELDHLNGILFIDHLSR 152 +A C HELDHL+G+ F+D ++ Sbjct: 125 MAKCFCHELDHLDGVCFVDKVTE 147 >gi|113868038|ref|YP_726527.1| peptide deformylase [Ralstonia eutropha H16] gi|113526814|emb|CAJ93159.1| polypeptide or peptide deformylase [Ralstonia eutropha H16] Length = 177 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 16/147 (10%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L +V+RP+E+ N+ ++ LI++M + M +G GLAA QIGV ++V+ Sbjct: 10 DPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIFGFD----- 64 Query: 70 KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +NP V INP + SD+ EGCLS+P R V R + D Sbjct: 65 RNPRYPDAPTVPKTVLINPVLEMESDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGHDLMG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL GIL+ Sbjct: 125 NRIERVAEGFHARVVQHECDHLQGILY 151 >gi|326331194|ref|ZP_08197489.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] gi|325951015|gb|EGD43060.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] Length = 178 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 6/151 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ 64 +V P +L + ++ + + L +++ M + G +GLAA Q+GV R+ +D+ Sbjct: 17 VVRAPAHVLSVPGKDVDPAAPETVQLAADLIATMRVSPGCVGLAADQVGVSARIFCVDVS 76 Query: 65 DHAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR-YMDCNAQ 120 H + V N +++ S + +EGC+S+PD DVKR++ + VR + + Sbjct: 77 THVKTRTHHGTYVLCNAEVVEASRNEKA-REGCMSVPDLTGDVKRASRLKVRGQLPVTGE 135 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I D A CLQHE+DH NG+LFID ++ Sbjct: 136 TVEIVTDAFEARCLQHEIDHTNGLLFIDRVA 166 >gi|258542784|ref|YP_003188217.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256633862|dbj|BAH99837.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256636921|dbj|BAI02890.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-03] gi|256639974|dbj|BAI05936.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-07] gi|256643030|dbj|BAI08985.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-22] gi|256646085|dbj|BAI12033.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-26] gi|256649138|dbj|BAI15079.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-32] gi|256652125|dbj|BAI18059.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655182|dbj|BAI21109.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-12] Length = 174 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 7/160 (4%) Query: 12 PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--IDLQDHAH 68 P+LR+ ++ + + DI LI +M E + + G+GLAA Q+ V RL + + L Sbjct: 12 PVLRQPAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLFLYSVPLARSEG 71 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +P INP + D+ + EGCLS+PD R +V R I D + Q Sbjct: 72 EDDPSLPVQALINPVLKPVDDEKLLRTEGCLSLPDLRGEVPRYKRIWYAGFDPHGQKVEG 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A G A +QHE+DHL+GIL+ ++ + + K++++ Sbjct: 132 MATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKELTR 171 >gi|154252515|ref|YP_001413339.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] gi|154156465|gb|ABS63682.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] Length = 207 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 13/148 (8%) Query: 12 PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--------- 61 P+LR ++RP+ + ++ L+ +M+E M +G GLAA Q+ +R+VV Sbjct: 12 PVLRGIARPVPDPTAPEVKALVRDMIETMIDANGAGLAAPQVYEPWRIVVFQAPESRLPE 71 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + H V INP++ +++ EGCLS+P R V R + R N Sbjct: 72 GVDETEAFDHTAPLTVLINPEVEILTEEMEKGWEGCLSVPGLRGSVPRHTELRYRGYGLN 131 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + A G A +QHE DHL+GIL+ Sbjct: 132 GELIERRARGFHARVIQHECDHLDGILY 159 >gi|75762798|ref|ZP_00742622.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489709|gb|EAO53101.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 221 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYR 57 DPILR V+ + EK + + +I+ M E GIGLAA QIGV + Sbjct: 12 DPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|251771507|gb|EES52084.1| Polypeptide deformylase [Leptospirillum ferrodiazotrophum] Length = 175 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV D +LR S P++ ++ ++ ++ + + + G+ +AA QIGV RL V Sbjct: 1 MSVRPLVSHRDTVLRIASEPVDPCAPEVRQVVQDLFDTLATQKGVAMAAPQIGVAMRLFV 60 Query: 61 IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 DL+ + P + INP I V EGCLS P ++R + V Sbjct: 61 FDLKRPREKGGPPTRGLLINPTIERRFGSIPVI-EGCLSFPGLDLSIRRPEGVVVSGYGL 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + ++ GL A ++HE DHL G L D + L Sbjct: 120 DGKKVVLEGGGLFARMVEHETDHLEGRLLPDRQNGL 155 >gi|86741351|ref|YP_481751.1| peptide deformylase [Frankia sp. CcI3] gi|86568213|gb|ABD12022.1| peptide deformylase [Frankia sp. CcI3] Length = 230 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 42/192 (21%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ DP+LR + + + ++ + L+ +M++ MY G+GLAA QIGV RL V D+ Sbjct: 5 PIRTVGDPVLRTPTTLVTEFDTALGRLVTDMIDTMYDAPGVGLAAPQIGVGLRLFVFDV- 63 Query: 65 DHAHR----------------------KNPMVFINPKIITFSDDFSVYQE---------- 92 D+ R P P I S + E Sbjct: 64 DYDPRDESVPRVPRVVVNPVLELGPDPGRPGETQRPGGIQRSGETQRSGETQRSGETQRS 123 Query: 93 ---------GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 GCLS+P R+ VR +D Q +GLLA C QHE+DHL+G Sbjct: 124 GETQQHGPEGCLSVPGLHFPTTRALAARVRGVDVTGQPVEYAGEGLLARCFQHEVDHLDG 183 Query: 144 ILFIDHLSRLKR 155 IL++D L+ R Sbjct: 184 ILYVDRLTGEAR 195 >gi|71907756|ref|YP_285343.1| formylmethionine deformylase [Dechloromonas aromatica RCB] gi|71847377|gb|AAZ46873.1| Formylmethionine deformylase [Dechloromonas aromatica RCB] Length = 204 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P++ +P+L V++ + + S++ LI++M + M + G+GLAA QIG+ ++V Sbjct: 29 MAARPILRMGEPLLFEVAKAVTEFGTSELRALIEDMFDSMEAAGGVGLAAPQIGIGLQMV 88 Query: 60 VIDLQDHAHRKN----PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + + P+ V INP I D+ + EGCLS+P R +V R I + Sbjct: 89 IFGFEKSERYPDAEAVPLTVLINPLITPVGDEEELGWEGCLSVPGLRGEVPRHTRIRYQG 148 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D +G A +QHE DHL G L+ + R T Sbjct: 149 FDPEGTPIDRTVEGFHARVVQHECDHLIGRLYPSRIRDFSRFGFT 193 >gi|283783275|ref|YP_003374029.1| peptide deformylase [Gardnerella vaginalis 409-05] gi|297243498|ref|ZP_06927430.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] gi|283441016|gb|ADB13482.1| peptide deformylase [Gardnerella vaginalis 409-05] gi|296888543|gb|EFH27283.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] Length = 162 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 9/165 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR I +I + +L+D++LE + GL+A QIGV +R Sbjct: 1 MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP I + EGCLS+P +R+ + R +D + + Sbjct: 61 YNINGRIG-----YILNPVIEELKGE-QYDDEGCLSVPGLWYKTRRANYARARGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++ +GL+A +QHE DHL+G +++D RL++D+ + + +L Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLD---RLEKDVRRQALREL 156 >gi|194289796|ref|YP_002005703.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424] gi|193223631|emb|CAQ69638.1| putative POLYPEPTIDE DEFORMYLASE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 177 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L +V+RP+E+ N+ ++ LI++M + M +G GLAA QIGV ++V+ + Sbjct: 10 DPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIFGFDRNPRY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP + SD+ EGCLS+P R V R + D Sbjct: 70 PDAPTVPKTVLINPVLEMQSDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGYDLMGNRIER 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL GIL+ Sbjct: 130 VAEGFHARVVQHECDHLQGILY 151 >gi|15615221|ref|NP_243524.1| peptide deformylase [Bacillus halodurans C-125] gi|17432952|sp|Q9K9I9|DEF_BACHD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|10175279|dbj|BAB06377.1| formylmethionine deformylase [Bacillus halodurans C-125] Length = 182 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 16/157 (10%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P+LR V++P+ ++ + MLE + ++ G+GLAA QIG+ + Sbjct: 12 NPVLREVAKPVPVPLSDEDKQTAKRMLEFLINSQNPEIAEKYSLRPGVGLAAPQIGLSKQ 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRY 114 ++ + D ++ +V NPKII+ S + + + EGCLS+ + + V R A ITV+ Sbjct: 72 MIAVHTTDENEKEYSLVLFNPKIISESVEMTHLEGGEGCLSVDREVQGIVPRHARITVKA 131 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ N + + G A QHE+DHLNGI+F D + Sbjct: 132 INENNEEVRLKLKGFPAIVFQHEIDHLNGIMFYDRIE 168 >gi|47221907|emb|CAF98919.1| unnamed protein product [Tetraodon nigroviridis] Length = 198 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 84/157 (53%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 DP+LR + P++ +++ ++ +++VM D +GL+A QIGV R++ ++ + Sbjct: 27 DPVLRSRAAPVDPGAVGGAEVQKVVHTLVKVMRELDCVGLSAPQIGVPLRILALEYPEKM 86 Query: 67 ------AHRK------NPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A R+ P+ +F+NP++ +++QE C SI + A V R + V Sbjct: 87 LEESSPASREARGLSAQPLRIFVNPQLRVLDGRTALFQEACESISGFSATVPRYLSVEVS 146 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ N + A G A LQHE+DHL+G+L+ID + Sbjct: 147 GLNENGEEVRWQARGWPARILQHEMDHLDGVLYIDRM 183 >gi|227502026|ref|ZP_03932075.1| peptide deformylase [Corynebacterium accolens ATCC 49725] gi|227077310|gb|EEI15273.1| peptide deformylase [Corynebacterium accolens ATCC 49725] Length = 207 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 21/176 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P+VI +P+L + + P+E+ + ++ LI +M E M G+GLAA Q+G+ R Sbjct: 1 MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60 Query: 58 LVVIDLQD-------------HAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 L V D RK NP++ + T D EGCLS+P Sbjct: 61 LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 R+ + V D N + G A CLQHE HL+G ++ D L R KR Sbjct: 121 GFPTGRADWARVTGKDENGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKR 176 >gi|195389911|ref|XP_002053615.1| GJ23993 [Drosophila virilis] gi|194151701|gb|EDW67135.1| GJ23993 [Drosophila virilis] Length = 234 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 17/159 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61 DP+LR + P E ++S ++ ++D M+ V+ D +G+AA QIG+ R++ + Sbjct: 52 DPVLRDRAAVVPAECVDSKEVQAIVDQMVHVLRKFDCVGIAAPQIGISLRIIAMEFRRSI 111 Query: 62 --DLQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 DL + ++ M V INPK+ + + EGC+S+ Y A+V+R + + Sbjct: 112 KQDLSEATYKARQMSELPLTVLINPKLTVTNYTKHKHPEGCMSVRGYSAEVERYEGVKLS 171 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ H + G A QHE+DHL+G L+ DH+ R Sbjct: 172 GVNRQGAHSELELSGWNARIAQHEMDHLDGKLYTDHMDR 210 >gi|195389909|ref|XP_002053614.1| GJ23992 [Drosophila virilis] gi|194151700|gb|EDW67134.1| GJ23992 [Drosophila virilis] Length = 203 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---- 63 DP+LR + P E+++S +I +++D M++V+ D +G+AA Q+GV R++V++ Sbjct: 21 DPVLRVRAEEVPPERLDSHEINDIVDQMVKVLRHYDCVGVAAPQLGVPLRIIVMEFREGK 80 Query: 64 ------QDHAHRK-NPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +D+ RK +P+ VFINPKI +D + EGC+S+ + V R + V Sbjct: 81 RAQFTAEDYEQRKMSPLPLSVFINPKIEIITDAQHTHPEGCMSVRGFSGQVARYDRVRVT 140 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + G A QHE+DHLNGI+++D + Sbjct: 141 GIGMLGTPSELELVGWSARIAQHEMDHLNGIIYVDRM 177 >gi|167747469|ref|ZP_02419596.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662] gi|167652831|gb|EDR96960.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662] Length = 153 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 80/142 (56%), Gaps = 9/142 (6%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69 DPIL++ + + +++ +D++++ ++S+D G LAA Q G+L R++VID + + Sbjct: 11 DPILKKKCKTVPEVDDKARQQLDDLMDTLHSSDNGAALAANQAGILRRMIVIDYEGYY-- 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD-G 128 + +NP I+ S EGCLS P+ R A + V +D N H++ Y G Sbjct: 69 ---LKLVNPVIVESSGSQECV-EGCLSFPNRFGKTIRPARVKVEALDENG-HEVSYTVVG 123 Query: 129 LLATCLQHELDHLNGILFIDHL 150 +A C HE+DHL+G +FID + Sbjct: 124 EMAKCFCHEIDHLDGEVFIDKV 145 >gi|187928362|ref|YP_001898849.1| peptide deformylase [Ralstonia pickettii 12J] gi|187725252|gb|ACD26417.1| peptide deformylase [Ralstonia pickettii 12J] Length = 177 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 10/144 (6%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQ 64 D L RV++P+E+ ++ ++ LI++M + M + G GLAA QIGV ++V+ D Sbjct: 10 DSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGFDRNDRY 69 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A V INP I SD+ EGCLS+P R V R + +RY + I Sbjct: 70 PDAPAVPKTVLINPTIEPLSDEMEEGWEGCLSVPGLRGVVPR--YTRLRYTGFDQHGHAI 127 Query: 125 --YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G+L+ Sbjct: 128 DRIAEGFHARVVQHECDHLQGVLY 151 >gi|294339982|emb|CAZ88345.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp. 3As] Length = 177 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA-H 68 DP L RV++P+ K ++ ++ LI ++ E M + G+GLAA QIGV +V+ A + Sbjct: 11 DPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVVIFGFSQSARY 70 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V INP+I D EGCLS+P R V R I R MD Sbjct: 71 PEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRGMDPYGNPIDR 130 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 A+G A +QHE DHL G L+ + R T ++ Sbjct: 131 EAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168 >gi|295676828|ref|YP_003605352.1| peptide deformylase [Burkholderia sp. CCGE1002] gi|295436671|gb|ADG15841.1| peptide deformylase [Burkholderia sp. CCGE1002] Length = 177 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R++ P++ ++ ++ L+++M E M++ +G GLAA QIGV ++V+ + Sbjct: 10 DPRLLRIAEPVDHFDTPELHRLVEDMFETMHAANGAGLAAPQIGVNLQVVIFGFGSNERY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP I S D EGCLS+P R V R + I D Sbjct: 70 PDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGFDQFGNPIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151 >gi|255325809|ref|ZP_05366901.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] gi|311740109|ref|ZP_07713942.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] gi|255297021|gb|EET76346.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] gi|311304805|gb|EFQ80875.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] Length = 207 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 21/176 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P+VI + +L ++P+E+ ++ LI +M E M + +G+GLAA Q+G+ R Sbjct: 1 MTIRPIVIHGETVLHEPTQPVEESEISTPEMQQLIADMYETMDAANGVGLAANQVGIGKR 60 Query: 58 LVV-------------IDLQDHAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 L V + ++ RK NP++ + T D EGCLS+P Sbjct: 61 LFVYHCPDTDGPNGTELPSEEAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 R+ + V D N + G A CLQHE HL+G L+ D L R KR Sbjct: 121 GFPTGRADWARVTGKDENGNDISVEGYGFFARCLQHETGHLDGFLYTDTLIGRYKR 176 >gi|30022062|ref|NP_833693.1| peptide deformylase [Bacillus cereus ATCC 14579] gi|228941135|ref|ZP_04103690.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954250|ref|ZP_04116277.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228974067|ref|ZP_04134639.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229047661|ref|ZP_04193247.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH676] gi|229071475|ref|ZP_04204696.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus F65185] gi|229111445|ref|ZP_04240996.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-15] gi|229129252|ref|ZP_04258224.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-Cer4] gi|229152174|ref|ZP_04280367.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1550] gi|229192182|ref|ZP_04319149.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 10876] gi|296504467|ref|YP_003666167.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|39931053|sp|Q819K2|DEF2_BACCR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|29897619|gb|AAP10894.1| Polypeptide deformylase [Bacillus cereus ATCC 14579] gi|228591293|gb|EEK49145.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 10876] gi|228631136|gb|EEK87772.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1550] gi|228654178|gb|EEL10044.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-Cer4] gi|228671827|gb|EEL27120.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-15] gi|228711645|gb|EEL63599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus F65185] gi|228723682|gb|EEL75041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH676] gi|228785644|gb|EEM33651.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228805378|gb|EEM51970.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818529|gb|EEM64599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar berliner ATCC 10792] gi|296325519|gb|ADH08447.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|326941747|gb|AEA17643.1| peptide deformylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 184 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57 DPILR V+ + S+ ++N D + YS GIGLAA QIGV + Sbjct: 12 DPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|239977965|ref|ZP_04700489.1| polypetide deformylase [Streptomyces albus J1074] gi|291449876|ref|ZP_06589266.1| polypetide deformylase [Streptomyces albus J1074] gi|291352825|gb|EFE79727.1| polypetide deformylase [Streptomyces albus J1074] Length = 206 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 9/153 (5%) Query: 19 RPIEKINSDIMN------LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 RP ++ D L+D+M + +G GLAA Q+GV RL V D+ D ++ Sbjct: 34 RPCREVTEDAFGTAGLAALVDDMFATNQAAEGAGLAANQVGVDLRLFVWDITDDWGVRHV 93 Query: 73 MVFINPKI--ITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 NP + + +D V + EGCLS+P V R VR D + + +I G Sbjct: 94 GHLANPVLDDVPATDRRLVEEPEGCLSVPGPYRVVPRLDRAVVRGRDKDGRPLVIEGRGY 153 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 A CLQHE DHL G L++D L+R +R ++M Sbjct: 154 FARCLQHETDHLRGHLYLDRLARRERKSALQEM 186 >gi|228909800|ref|ZP_04073623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 200] gi|228850089|gb|EEM94920.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 200] Length = 184 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57 DPILR V+ + S+ ++N D + YS GIGLAA QIGV + Sbjct: 12 DPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|125778496|ref|XP_001360006.1| GA16218 [Drosophila pseudoobscura pseudoobscura] gi|54639756|gb|EAL29158.1| GA16218 [Drosophila pseudoobscura pseudoobscura] Length = 196 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP+LR+++ P E I + +I ++D M++V+ D +G+AA Q+GV R++V++ ++ Sbjct: 14 DPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGVPLRIIVMEFREGK 73 Query: 66 --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +A RK P+ VFINP++ S + + EGC+S+ Y A V+R + ++ Sbjct: 74 QEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGYSAQVERYDRVRIK 133 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + +G A QHE+DHLNG +++D + Sbjct: 134 GIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRM 170 >gi|228922725|ref|ZP_04086023.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228960236|ref|ZP_04121893.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pakistani str. T13001] gi|228980660|ref|ZP_04140967.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis Bt407] gi|229081226|ref|ZP_04213735.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock4-2] gi|229146546|ref|ZP_04274916.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST24] gi|228636908|gb|EEK93368.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST24] gi|228702088|gb|EEL54565.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock4-2] gi|228779064|gb|EEM27324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis Bt407] gi|228799504|gb|EEM46464.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pakistani str. T13001] gi|228836780|gb|EEM82123.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 181 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57 DPILR V+ + S+ ++N D + YS GIGLAA QIGV + Sbjct: 9 DPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 68 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 69 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 125 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 126 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166 >gi|225865956|ref|YP_002751334.1| peptide deformylase [Bacillus cereus 03BB102] gi|229186214|ref|ZP_04313383.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC 6E1] gi|225789299|gb|ACO29516.1| peptide deformylase [Bacillus cereus 03BB102] gi|228597390|gb|EEK55041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC 6E1] Length = 184 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 DPILR V+ + + + N + M+E V+ S D GIGLAA QIG+ + Sbjct: 12 DPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|165760871|pdb|2OKL|A Chain A, Crystal Structure Of Peptide Deformylase 2 With Actinonin From Bacillus Cereus gi|165760872|pdb|2OKL|B Chain B, Crystal Structure Of Peptide Deformylase 2 With Actinonin From Bacillus Cereus Length = 185 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57 DPILR V+ + S+ ++N D + YS GIGLAA QIGV + Sbjct: 13 DPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 72 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 73 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 129 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 130 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 170 >gi|118479185|ref|YP_896336.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam] gi|196045777|ref|ZP_03113006.1| peptide deformylase [Bacillus cereus 03BB108] gi|118418410|gb|ABK86829.1| polypeptide deformylase [Bacillus thuringiensis str. Al Hakam] gi|196023217|gb|EDX61895.1| peptide deformylase [Bacillus cereus 03BB108] Length = 184 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 DPILR V+ + + + N + M+E V+ S D GIGLAA QIG+ + Sbjct: 12 DPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|229031607|ref|ZP_04187606.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1271] gi|228729701|gb|EEL80682.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1271] Length = 184 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57 DPILR V+ + S+ ++N D + YS GIGLAA QIG+ + Sbjct: 12 DPILRNVAEEVSMPASEEDTTALKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|194741018|ref|XP_001952986.1| GF17443 [Drosophila ananassae] gi|190626045|gb|EDV41569.1| GF17443 [Drosophila ananassae] Length = 196 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP+LR+ + P E+I+S +I ++D M++V+ D +G+AA QIG+ R++V++ ++ Sbjct: 14 DPVLRQRAEEVPEERIDSPEIDQIVDRMVKVLRHYDCVGVAAPQIGIPLRIIVMEFREGK 73 Query: 66 --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + RK P+ VF+NP++ S + + EGC+S+ Y A+V R + VR Sbjct: 74 REQYKPEIYEERKMSTLPLAVFVNPELEIVSGQINKHPEGCMSVRGYSAEVGRFDKVRVR 133 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + +G A QHE DHLNG +++D + Sbjct: 134 GVGKLGTPSEMELEGWNARIAQHETDHLNGCIYVDRM 170 >gi|33603069|ref|NP_890629.1| peptide deformylase [Bordetella bronchiseptica RB50] gi|39931041|sp|Q7WG25|DEF2_BORBR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|33568700|emb|CAE34458.1| peptide deformylase [Bordetella bronchiseptica RB50] Length = 176 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68 DP L RV+ P+E+ ++ ++ LID+M E M G+GLAA QIGV +LV+ + + + Sbjct: 10 DPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGFERNDRY 69 Query: 69 RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P V NP I S + EGCLS+P R V R I D Q Sbjct: 70 PDAPAVPRTILCNPVIEPLSGEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPAGQRIER 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ + L + T+ Sbjct: 130 EAEGFHARVVQHECDHLIGRLYPTRIRDLTKFGYTE 165 >gi|332305299|ref|YP_004433150.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172628|gb|AEE21882.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 183 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 8/148 (5%) Query: 11 DPILRRVSRPI--EKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + IL ++++P+ E I SD +D +L M + +G+G+AA Q+ +++I + + Sbjct: 8 ETILHQIAKPVAEEAIKSDAFQAFVDELLSTMQNANGVGIAAPQVFDERAVMIIASRPSS 67 Query: 68 HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 N P+V INPK+I + + EGCLS+P R ++R++++ + Y + Sbjct: 68 RYPNAPEMEPLVLINPKVIQSAQESVKDWEGCLSVPGLRGYIRRASWVEIAYQQRDGSQV 127 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150 G +A HE DHL G ++DH+ Sbjct: 128 STRLSGFVARIFLHEFDHLIGKTWLDHV 155 >gi|241562206|ref|XP_002401329.1| polypeptide deformylase, putative [Ixodes scapularis] gi|215499858|gb|EEC09352.1| polypeptide deformylase, putative [Ixodes scapularis] Length = 217 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 17/158 (10%) Query: 11 DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61 DP+LR + P+ +KI S +I +I M +VM T +G++A QIG ++ ++ Sbjct: 38 DPVLRVRAEPVDPQKITSPEIRKVIHTMRQVMRGTYSVGISAPQIGCPLQITMMEFSNSN 97 Query: 62 -------DLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D+ ++ P+ VFINP + ++ V+ EGC SI Y A+V R + + Sbjct: 98 IRMAKKEDMTARLYQAFPLKVFINPTMEVVNNQQLVFPEGCESIRGYSAEVPRYYEVKIS 157 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ + +H A G A +QHE+DHL G L+ID ++ Sbjct: 158 GLNEHGEHHEWQARGWPARIIQHEIDHLEGCLYIDRMN 195 >gi|239927233|ref|ZP_04684186.1| peptide deformylase [Streptomyces ghanaensis ATCC 14672] Length = 205 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 12/156 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ ++ ++ + M++ G+GLAA Q+GV R+ VI+ Sbjct: 16 PIVAAGDPVLRRGAEPFDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIAVIE 75 Query: 63 ----LQDHAHRKN---PMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + R P F +NP + + EGCLS+P Y+A V R A + + Sbjct: 76 DPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAEVRL 135 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + + G A +QHE+DHL+G+L++D Sbjct: 136 TGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLD 171 >gi|152983750|ref|YP_001349601.1| peptide deformylase [Pseudomonas aeruginosa PA7] gi|150958908|gb|ABR80933.1| peptide deformylase [Pseudomonas aeruginosa PA7] Length = 179 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 10/149 (6%) Query: 20 PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN-----PM 73 P E S ++ LID+M E M G+GLAA QIGV +LV+ + + P Sbjct: 21 PAESFGSQELQRLIDDMFETMRHVGGVGLAAPQIGVDLQLVIFGFERSERYPDAPAVPPT 80 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII--YADGLLA 131 + +NP+I D+ EGCLS+P R V R +RY + Q + I +G A Sbjct: 81 ILLNPRITALDDEIEEGWEGCLSVPGLRGMVPRHR--RIRYQGVDPQGKPIDRSVEGFHA 138 Query: 132 TCLQHELDHLNGILFIDHLSRLKRDMITK 160 +QHE DHL G L+ ++ + T+ Sbjct: 139 RVVQHECDHLIGRLYPSRITDFGKFGFTE 167 >gi|296393247|ref|YP_003658131.1| peptide deformylase [Segniliparus rotundus DSM 44985] gi|296180394|gb|ADG97300.1| peptide deformylase [Segniliparus rotundus DSM 44985] Length = 198 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 19/162 (11%) Query: 5 PLVIFPDPILRRVSRPIEKIN--------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 P+ I DP+L R P E + ++++L+++M + + ++ G+GLAA QIGV Sbjct: 5 PIRITGDPVLHR---PTELVRLTAEGAAPPEVVSLLEDMYDTLKASHGVGLAATQIGVGL 61 Query: 57 RLVVIDLQDHAHRKN---PMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108 RL V D D K INP + T + D +EGCLS+P R R+ Sbjct: 62 RLFVYDCPDDTSGKRVSRKGEIINPVLQTSALPEGMPDEDEDEEGCLSVPGLRFPTGRAV 121 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + +D + I +GL A LQHE+ HL+G L++D L Sbjct: 122 WAKATGVDRTGKPVEIEGEGLFARMLQHEVGHLDGKLYVDML 163 >gi|221104975|ref|XP_002163732.1| PREDICTED: similar to peptide deformylase-like protein [Hydra magnipapillata] Length = 212 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 21/161 (13%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 DP+LR+V++P++ + D L D ++ + +G G+AA QIGV +++ ++ Sbjct: 37 DPVLRQVAKPVDLATIVTPDFKKLCDRLVSTLRRHNGCGIAAPQIGVPLQVIAVEFTGYD 96 Query: 65 -----DHAHRKN---------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D K P+ V INPKI +EGCLS+ YRA V R+ Sbjct: 97 LKVAMDKYGSKGVSKLQMSLFPLKVMINPKIKIIDPTMLALKEGCLSVKGYRAMVPRAKE 156 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 I V ++ + + + G + +QHE+DHL G LF+D + Sbjct: 157 IEVEMLNVSGNTETFRSLGWTSRIIQHEVDHLQGNLFVDTM 197 >gi|195107440|ref|XP_001998320.1| GI23900 [Drosophila mojavensis] gi|193914914|gb|EDW13781.1| GI23900 [Drosophila mojavensis] Length = 234 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 17/159 (10%) Query: 11 DPILR-RVSR-PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR R + P+E ++S +I ++D M+ V+ D +G+AA QIGV R++ ++ + Sbjct: 52 DPVLRDRAAEVPVECVDSKEIRAIVDRMVHVLRKYDCVGVAAPQIGVSLRIIAMEFRRGI 111 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ P VFINP++ + + EGC+S+ + A+V+R + + Sbjct: 112 KKELPEAMYRARQMSELPLTVFINPRLSVTNYTKHKHPEGCMSVRGFSAEVERYEAVKLS 171 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + + G A QHE+DHL+G L+ DH+ R Sbjct: 172 GLDREGEPLSLELSGWNARIAQHEMDHLDGKLYTDHMDR 210 >gi|282863154|ref|ZP_06272214.1| peptide deformylase [Streptomyces sp. ACTE] gi|282562136|gb|EFB67678.1| peptide deformylase [Streptomyces sp. ACTE] Length = 166 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 2/139 (1%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 DP+L + + L+++M MY+ G+GLAA QIGV R+ V D D + Sbjct: 6 DPVLHSPCEEVTDFGPSLARLVEDMFATMYAAHGVGLAANQIGVPLRVFVYDCPDDDEVR 65 Query: 71 NPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + +NP + +D +V EGCLS+P A R V + + G Sbjct: 66 HLGHLVNPVCVE-ADGITVRGPEGCLSLPGLEAGTPRFDRTVVEGRTVTGEPVRVTGTGW 124 Query: 130 LATCLQHELDHLNGILFID 148 A CLQHE DHL+G ++ D Sbjct: 125 FARCLQHECDHLDGTVYPD 143 >gi|29833891|ref|NP_828525.1| peptide deformylase [Streptomyces avermitilis MA-4680] gi|39931072|sp|Q825U9|DEF3_STRAW RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName: Full=Polypeptide deformylase 3 gi|29611016|dbj|BAC75060.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680] Length = 224 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 16/159 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ ++ ++ + M++ G+GLAA Q+GV R+ VI Sbjct: 34 PIVAAGDPVLRRGAEPYDGQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVI- 92 Query: 63 LQDHA---------HRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 +D A + P F +NP D + + EGCLS+P ++A V R A + Sbjct: 93 -EDPAPVPEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARPARV 151 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + +D + + G A +QHE DHL+G+L++D Sbjct: 152 RLTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDR 190 >gi|229180249|ref|ZP_04307593.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 172560W] gi|228603458|gb|EEK60935.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 172560W] Length = 184 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57 DPILR V+ + S+ ++N D + YS GIGLAA QIGV + Sbjct: 12 DPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|241662938|ref|YP_002981298.1| peptide deformylase [Ralstonia pickettii 12D] gi|240864965|gb|ACS62626.1| peptide deformylase [Ralstonia pickettii 12D] Length = 177 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 10/144 (6%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQ 64 D L RV++P+E+ ++ ++ LI++M + M + G GLAA QIGV ++V+ D Sbjct: 10 DSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGFDRNDRY 69 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A V INP I S+D EGCLS+P R V R + +RY + I Sbjct: 70 PDAPAVPKTVLINPTIEPLSNDMEEGWEGCLSVPGLRGVVPR--YTRLRYTGFDQHGHAI 127 Query: 125 --YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G+L+ Sbjct: 128 DRIAEGFHARVVQHECDHLQGVLY 151 >gi|156368959|ref|XP_001627958.1| predicted protein [Nematostella vectensis] gi|156214922|gb|EDO35895.1| predicted protein [Nematostella vectensis] Length = 192 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 22/162 (13%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+LR + ++ + D ++D +++VM S DG G+AA QIGV +++ ++ Sbjct: 16 DPVLREPAEAVDVTFVHSPDFKAMVDRLVKVMRSHDGAGIAAPQIGVGLQVIAMEYTGKH 75 Query: 63 ---LQDHAHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 L+D+ + VFINPK+ + ++E CLS+ + A V R + Sbjct: 76 MKKLKDNGFSDKDLKRMGIAIVPLKVFINPKLRVINPKMLAFRESCLSVEGHSAVVPRMS 135 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D NA A G A LQHE+DHL G L++D + Sbjct: 136 EVEVTALDQNATPITWRAAGWPARILQHEVDHLKGNLYVDSM 177 >gi|74316798|ref|YP_314538.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259] gi|74056293|gb|AAZ96733.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC 25259] Length = 177 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L +R +E+ +++ L+ +M + M + +G GLAA QIGV ++V+ ++ +A+ Sbjct: 11 DPRLLAPARAVERFATAELAQLVADMHDTMRALNGAGLAAPQIGVSLQVVIFEV--NANP 68 Query: 70 KNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P V +NP + SD EGCLS+P R V R I R D + Sbjct: 69 RYPDAAEVPLTVLVNPVVTPLSDATEEGWEGCLSVPGMRGLVPRHGEIHYRGFDAAGRAL 128 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 G A +QHE+DHLNGIL+ + L+ T + L+D Sbjct: 129 ERRVSGFHARVVQHEVDHLNGILYPMRIPDLRNFGFTDTLFPGQTLQD 176 >gi|70731936|ref|YP_261678.1| peptide deformylase [Pseudomonas fluorescens Pf-5] gi|68346235|gb|AAY93841.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5] Length = 179 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 14 LRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 L R++ P+ E +S ++ LID+M + M S G+GLAA QIGV +LV+ + H+ R Sbjct: 13 LLRIAPPVPPEMFDSPELWELIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFE-HSERY 71 Query: 71 NP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + INP I S EGCLS+P R V+R I D + + Sbjct: 72 PEAEAVPQTILINPLITPLSPVLEEGWEGCLSVPGLRGAVQRYQHIRYEGFDPRGEPIVR 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A G A +QHE DHL G L+ +S + T+ Sbjct: 132 VASGFHARVVQHECDHLIGRLYPSRISDFSKFGFTE 167 >gi|30264046|ref|NP_846423.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47529482|ref|YP_020831.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186882|ref|YP_030134.1| peptide deformylase [Bacillus anthracis str. Sterne] gi|49478480|ref|YP_038035.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321366|ref|ZP_00394325.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis str. A2012] gi|165872897|ref|ZP_02217522.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167633479|ref|ZP_02391803.1| peptide deformylase [Bacillus anthracis str. A0442] gi|167639508|ref|ZP_02397779.1| peptide deformylase [Bacillus anthracis str. A0193] gi|170687132|ref|ZP_02878350.1| peptide deformylase [Bacillus anthracis str. A0465] gi|170705828|ref|ZP_02896291.1| peptide deformylase [Bacillus anthracis str. A0389] gi|177655203|ref|ZP_02936812.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190566155|ref|ZP_03019074.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|196035869|ref|ZP_03103271.1| peptide deformylase [Bacillus cereus W] gi|196038641|ref|ZP_03105949.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|218905105|ref|YP_002452939.1| peptide deformylase [Bacillus cereus AH820] gi|227816748|ref|YP_002816757.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|228916611|ref|ZP_04080177.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935289|ref|ZP_04098115.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947693|ref|ZP_04109983.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093023|ref|ZP_04224154.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-42] gi|229603739|ref|YP_002868274.1| peptide deformylase [Bacillus anthracis str. A0248] gi|254683741|ref|ZP_05147601.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066] gi|254721576|ref|ZP_05183365.1| peptide deformylase [Bacillus anthracis str. A1055] gi|254736086|ref|ZP_05193792.1| peptide deformylase [Bacillus anthracis str. Western North America USA6153] gi|254743977|ref|ZP_05201660.1| peptide deformylase [Bacillus anthracis str. Kruger B] gi|254754244|ref|ZP_05206279.1| peptide deformylase [Bacillus anthracis str. Vollum] gi|254758065|ref|ZP_05210092.1| peptide deformylase [Bacillus anthracis str. Australia 94] gi|301055465|ref|YP_003793676.1| peptide deformylase [Bacillus anthracis CI] gi|39931064|sp|Q81MQ9|DEF2_BACAN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|30258691|gb|AAP27909.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47504630|gb|AAT33306.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180809|gb|AAT56185.1| polypeptide deformylase [Bacillus anthracis str. Sterne] gi|49330036|gb|AAT60682.1| polypeptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164711384|gb|EDR16936.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167512567|gb|EDR87942.1| peptide deformylase [Bacillus anthracis str. A0193] gi|167530885|gb|EDR93572.1| peptide deformylase [Bacillus anthracis str. A0442] gi|170129368|gb|EDS98232.1| peptide deformylase [Bacillus anthracis str. A0389] gi|170668749|gb|EDT19494.1| peptide deformylase [Bacillus anthracis str. A0465] gi|172080253|gb|EDT65344.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190563074|gb|EDV17040.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|195991518|gb|EDX55484.1| peptide deformylase [Bacillus cereus W] gi|196030364|gb|EDX68963.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|218537238|gb|ACK89636.1| peptide deformylase [Bacillus cereus AH820] gi|227006107|gb|ACP15850.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|228690394|gb|EEL44180.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-42] gi|228812213|gb|EEM58544.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824454|gb|EEM70260.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228843190|gb|EEM88272.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268147|gb|ACQ49784.1| peptide deformylase [Bacillus anthracis str. A0248] gi|300377634|gb|ADK06538.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI] Length = 184 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 DPILR V+ + + + N + M+E V+ S D GIGLAA QIG+ + Sbjct: 12 DPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|309782141|ref|ZP_07676871.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] gi|308919207|gb|EFP64874.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] Length = 177 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 10/144 (6%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQ 64 D L RV++P+E+ ++ ++ LI++M + M + G GLAA QIGV ++V+ D Sbjct: 10 DSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGFDRNDRY 69 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A V INP + SD+ EGCLS+P R V R + +RY + I Sbjct: 70 PDAPAVPKTVLINPTVEPLSDEMEEGWEGCLSVPGLRGVVPR--YTRLRYTGFDQHGHAI 127 Query: 125 --YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G+L+ Sbjct: 128 DRIAEGFHARVVQHECDHLQGVLY 151 >gi|260219440|emb|CBA26285.1| Peptide deformylase 2 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 179 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L RV++P+ + +SD ++L + +ML+ M + +G GLAA QIGV +LV+ + R Sbjct: 11 DPRLLRVAQPVTEFDSDALHLLVTDMLDTMRAANGAGLAAPQIGVDLQLVIFGGNERNPR 70 Query: 70 K------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P V NP I D+ EGCLS+P R V R + I D Sbjct: 71 YPDRPIVPPTVLCNPVITPLGDEEENDWEGCLSVPGLRGVVPRWSRIRYTGFDQYGDAID 130 Query: 124 IYADGLLATCLQHELDHLNGILF 146 DG A +QHE DH+ G L+ Sbjct: 131 RTVDGFHARVVQHECDHVWGKLY 153 >gi|23335172|ref|ZP_00120410.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|23466058|ref|NP_696661.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189439265|ref|YP_001954346.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|213691939|ref|YP_002322525.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227547307|ref|ZP_03977356.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621368|ref|ZP_04664399.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454248|ref|YP_003661391.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301] gi|317482866|ref|ZP_07941874.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|322689310|ref|YP_004209044.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis 157F] gi|322691322|ref|YP_004220892.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|39931156|sp|Q8G487|DEF2_BIFLO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|23326783|gb|AAN25297.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189427700|gb|ACD97848.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|213523400|gb|ACJ52147.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227212266|gb|EEI80162.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515829|gb|EEQ55696.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296183679|gb|ADH00561.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301] gi|316915711|gb|EFV37125.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|320456178|dbj|BAJ66800.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320458046|dbj|BAJ68667.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320460646|dbj|BAJ71266.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis 157F] Length = 162 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++LE + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP ++ EGCLS+P +R+ + VR +D + Sbjct: 61 YNIDGKVG-----YVLNP-VLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 ++ GL+ LQHE DHL+G +++D L + +R Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEER 149 >gi|311257108|ref|XP_003126954.1| PREDICTED: peptide deformylase, mitochondrial-like [Sus scrofa] Length = 249 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP LR V+ P+E ++ L+ +++VM +GL+A Q+GV +++ ++ D Sbjct: 78 DPALRAVAAPVEPAQLAGPELQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLALEFPDAL 137 Query: 66 -HA--------HRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 HA + P VF+NP + + EGC S+ + A V R + + Sbjct: 138 FHACAPRLREIRQMEPFPLHVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 197 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D + + A G A +QHE+DHL G+LFID + Sbjct: 198 GLDPRGEPVVWQASGWAARIIQHEMDHLQGLLFIDKM 234 >gi|256789557|ref|ZP_05527988.1| peptide deformylase [Streptomyces lividans TK24] Length = 222 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 13/173 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + + + ++ + M++ G+GLAA Q+GV R+ VI+ Sbjct: 29 PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 88 Query: 63 ----LQDH---AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + D A + P F +NP + + EGCLS+P ++A V R A + + Sbjct: 89 DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 148 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 R D + + G A +QHE DHL+G L++D + L+ M++L Sbjct: 149 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR-AELRSLASNAAMAEL 200 >gi|291435575|ref|ZP_06574965.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291338470|gb|EFE65426.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] Length = 214 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 12/156 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ ++ ++ + M++ G+GLAA Q+GV R+ VI+ Sbjct: 25 PIVAAGDPVLRRGAEPFDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIAVIE 84 Query: 63 ----LQDHAHRKN---PMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + R P F +NP + + EGCLS+P Y+A V R A + + Sbjct: 85 DPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAEVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + + G A +QHE+DHL+G+L++D Sbjct: 145 TGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLD 180 >gi|218231086|ref|YP_002368775.1| peptide deformylase [Bacillus cereus B4264] gi|218159043|gb|ACK59035.1| peptide deformylase [Bacillus cereus B4264] Length = 184 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57 DPILR V+ + S+ ++N D + YS GIGLAA QIGV + Sbjct: 12 DPILRNVAEDVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|47565850|ref|ZP_00236889.1| polypeptide deformylase [Bacillus cereus G9241] gi|47557130|gb|EAL15459.1| polypeptide deformylase [Bacillus cereus G9241] Length = 184 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 DPILR V+ + + + N + M+E V+ S D GIGLAA QIG+ + Sbjct: 12 DPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|298346549|ref|YP_003719236.1| peptide deformylase [Mobiluncus curtisii ATCC 43063] gi|304389733|ref|ZP_07371692.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315655106|ref|ZP_07908008.1| peptide deformylase [Mobiluncus curtisii ATCC 51333] gi|315657036|ref|ZP_07909921.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236610|gb|ADI67742.1| peptide deformylase [Mobiluncus curtisii ATCC 43063] gi|304326909|gb|EFL94148.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490587|gb|EFU80210.1| peptide deformylase [Mobiluncus curtisii ATCC 51333] gi|315492428|gb|EFU82034.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 164 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 7/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + + DP+LR I + + + L++++LE + GLAA QIGV R Sbjct: 1 MAFREIRVVGDPVLRTPCDWITDPRDPGVKQLVEDLLENVDEDGRAGLAANQIGVSLRAF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ +NPK++ S+D + EGCLS+P KR+ + V +D + Sbjct: 61 SWNIDGEIG-----YVLNPKLVAMSEDEYQDGDEGCLSVPGLFYPTKRAWYARVEGIDLD 115 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + ++ + L+ CLQHE DHL G L++D L R R +++ K+ Sbjct: 116 GKPLVVEGEELMGRCLQHECDHLEGHLYLDKLERKYRKEALQQIRKM 162 >gi|330817443|ref|YP_004361148.1| Peptide deformylase [Burkholderia gladioli BSR3] gi|327369836|gb|AEA61192.1| Peptide deformylase [Burkholderia gladioli BSR3] Length = 177 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L V++P+E ++ ++ L+ +M E M+ +G GLAA QIGV +L++ ++A Sbjct: 10 DPRLLEVAKPVEAFDTPELHELVADMFETMHHANGAGLAAPQIGVGLQLIIFGFGNNARY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP + D EGCLS+P R V R + + D + Sbjct: 70 PDAPPVPETVLINPSVEYLPPDMEEGWEGCLSVPGMRGVVSRYSKVHYSGFDQYGKRIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 IAEGFHARVVQHEYDHLIGKLY 151 >gi|121594637|ref|YP_986533.1| peptide deformylase [Acidovorax sp. JS42] gi|222110774|ref|YP_002553038.1| peptide deformylase [Acidovorax ebreus TPSY] gi|120606717|gb|ABM42457.1| peptide deformylase [Acidovorax sp. JS42] gi|221730218|gb|ACM33038.1| peptide deformylase [Acidovorax ebreus TPSY] Length = 179 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 7/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L RV++P+ ++ ++ L+++M E M + +G GLAA QIG +++V+ + R Sbjct: 11 DPRLLRVAQPVTAFDTPALHQLVNDMRETMQAVNGAGLAAPQIGEDWQVVIFGSGERNPR 70 Query: 70 KN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P V INP I D EGCLS+P R V R A I R +D Sbjct: 71 YPDRPIVPPTVLINPVITPLGADEEDDWEGCLSVPGLRGKVPRFARIHYRGVDLLGAPID 130 Query: 124 IYADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 131 RVAEGFHARVVQHECDHLIGKLY 153 >gi|21219403|ref|NP_625182.1| peptide deformylase [Streptomyces coelicolor A3(2)] gi|23396576|sp|Q9RD27|DEF1_STRCO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|6562865|emb|CAB62674.1| polypeptide deformylase [Streptomyces coelicolor A3(2)] Length = 218 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 13/173 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + + + ++ + M++ G+GLAA Q+GV R+ VI+ Sbjct: 25 PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84 Query: 63 ----LQDH---AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + D A + P F +NP + + EGCLS+P ++A V R A + + Sbjct: 85 DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 R D + + G A +QHE DHL+G L++D + L+ M++L Sbjct: 145 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR-AELRSLASNAAMAEL 196 >gi|228929021|ref|ZP_04092053.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229123495|ref|ZP_04252694.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 95/8201] gi|228659982|gb|EEL15623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 95/8201] gi|228830828|gb|EEM76433.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 181 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 DPILR V+ + + + N + M+E V+ S D GIGLAA QIG+ + Sbjct: 9 DPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 68 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 69 MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 125 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 126 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166 >gi|148273059|ref|YP_001222620.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830989|emb|CAN01934.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 163 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +F DP+L+ VS I +I+ + L++++L+ + G+AA QIGV Sbjct: 1 MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGV------ 54 Query: 61 IDLQDHAHRKNPMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L+ ++ P +NP I + + EGCLS+P R + +D Sbjct: 55 -NLRAFSYNVGPAFGYVLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVITGIDLE 113 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I G+LA QHE+DHL+G++++D L + +R K++ + Sbjct: 114 GKPVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159 >gi|289773445|ref|ZP_06532823.1| polypeptide deformylase [Streptomyces lividans TK24] gi|289703644|gb|EFD71073.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 218 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 13/173 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + + + ++ + M++ G+GLAA Q+GV R+ VI+ Sbjct: 25 PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84 Query: 63 ----LQDH---AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + D A + P F +NP + + EGCLS+P ++A V R A + + Sbjct: 85 DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 R D + + G A +QHE DHL+G L++D + L+ M++L Sbjct: 145 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR-AELRSLASNAAMAEL 196 >gi|229157552|ref|ZP_04285629.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 4342] gi|228626002|gb|EEK82752.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 4342] Length = 181 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 DPILR V+ + + + N + M+E V+ S D GIGLAA QIG+ + Sbjct: 9 DPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 68 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 69 MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 125 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 126 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166 >gi|152966929|ref|YP_001362713.1| peptide deformylase [Kineococcus radiotolerans SRS30216] gi|151361446|gb|ABS04449.1| peptide deformylase [Kineococcus radiotolerans SRS30216] Length = 181 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 8/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR+ + + + ++ L+ ++ + M + G GLAA Q+GV R+ Sbjct: 1 MAIQPIRLFGDPVLRQRADEVTTFDKELRQLVKDLEDTMLAAPGAGLAAPQLGVSLRVFT 60 Query: 61 IDLQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D H NP ++ S++ EGCLS P AD +RS + + D + Sbjct: 61 YHADDEIGHLVNP-------VLDLSEECQEGDEGCLSFPGIVADTRRSLHVVAKGFDMHG 113 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I A +QHE DHL+G+LFID L + +R + K + + L Sbjct: 114 EPITITGSEFKARAIQHETDHLDGVLFIDRLDKAQRKLALKAVREAEWL 162 >gi|229174643|ref|ZP_04302171.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3] gi|228608845|gb|EEK66139.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3] Length = 184 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57 DPILR V+ + S+ ++N D + YS GIGLAA QIG+ + Sbjct: 12 DPILRNVAEEVSIPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|167462507|ref|ZP_02327596.1| Def2 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383825|ref|ZP_08057572.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151641|gb|EFX44714.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 195 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57 DPILR V++P+ S+ + N D L Y G+GL+A QIG+ R Sbjct: 20 DPILREVTQPVHVPPSEEDRETLCCMLQFLKNSQDPELAEKYQLRGGVGLSANQIGLNKR 79 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 + LQD + + + +NP+II+ S + EGCLS+ P + V R I Sbjct: 80 MFAAYLQDEQGKTHEYMVVNPQIISHSAAMTYLDQGEGCLSVDRPVPGF---VPRYERIK 136 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ D N + ++ G ++ QHE+DHLNGI+F DH+ + Sbjct: 137 VKAYDINGEEVVLRLKGYVSIVFQHEMDHLNGIMFYDHIDK 177 >gi|145220780|ref|YP_001131458.1| peptide deformylase [Mycobacterium gilvum PYR-GCK] gi|315442266|ref|YP_004075145.1| peptide deformylase [Mycobacterium sp. Spyr1] gi|189083073|sp|A4T2T4|DEF_MYCGI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145213266|gb|ABP42670.1| peptide deformylase [Mycobacterium gilvum PYR-GCK] gi|315260569|gb|ADT97310.1| peptide deformylase [Mycobacterium sp. Spyr1] Length = 197 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +P+ I DP+L + PI + +D+ +LI ++ + M + G+GLAA QIGV Sbjct: 1 MAVRPICIVGDPVLHTATEPIPVGPDGSLPADLADLITDLYDTMDAAHGVGLAANQIGVN 60 Query: 56 YRLVVIDLQDHAHR--KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D + + V +NP + T D EGCLS+P R+ Sbjct: 61 KRVFVYDCADARKKTVRRRGVVVNPVLETSEVPETMPDPEDDDEGCLSVPGESFPTGRAD 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + I L A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGTPITIEGTDLFARMLQHETGHLDGFLYLDSL 162 >gi|124359186|gb|ABD28402.2| Formylmethionine deformylase [Medicago truncatula] Length = 266 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+L +R ++ +INSD I +ID M+ VM + GI L+A +IG+ R++V++ Sbjct: 72 DPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLEEPKEN 131 Query: 63 LQDHAHRKNP---------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 L ++ N +V +NPK+ S+ ++ EGCLS+ ++A V+R + V Sbjct: 132 LYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYLDVEVE 191 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D + I A G A LQHE DHL+G L++D + Sbjct: 192 GFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKM 228 >gi|284990128|ref|YP_003408682.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] gi|284063373|gb|ADB74311.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] Length = 161 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ DP+LR + + + ++ L+ ++ + + G+AA QIGV R Sbjct: 1 MTIRPIRELGDPVLRTPADEVRSFDKELAALVRDLEDTVADPGRAGVAAPQIGVGLRAFS 60 Query: 61 IDLQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ H +NP+I+ S++ EGCLSIP A R+ V D + Sbjct: 61 YNVDGRIGH------VVNPRIVELSEETQDGDEGCLSIPGLWAPTVRAMHAVVEGFDVHG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + GL+A LQHE+DHL+G +F+D L+ Sbjct: 115 EPVRLEGTGLMARALQHEVDHLDGKVFLDRLT 146 >gi|17546118|ref|NP_519520.1| peptide deformylase [Ralstonia solanacearum GMI1000] gi|23396561|sp|Q8XZJ6|DEF2_RALSO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|17428414|emb|CAD15101.1| putative peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein [Ralstonia solanacearum GMI1000] Length = 177 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 10/151 (6%) Query: 4 KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 +P++ D L RV++P+++ + ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 3 RPILKMGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFG 62 Query: 62 ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D A V INP I SD EGCLS+P R V R + +RY Sbjct: 63 FDRNDRYPDAPAVPKTVLINPTIEPLSDAMEDGWEGCLSVPGLRGVVPR--YTRLRYTGY 120 Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILF 146 + I A+G A +QHE DHL GIL+ Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILY 151 >gi|15828039|ref|NP_302302.1| peptide deformylase [Mycobacterium leprae TN] gi|221230516|ref|YP_002503932.1| peptide deformylase [Mycobacterium leprae Br4923] gi|17432941|sp|Q9CBI2|DEF_MYCLE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767596|sp|B8ZSF6|DEF_MYCLB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|13093592|emb|CAC30884.1| polypeptide deformylase [Mycobacterium leprae] gi|219933623|emb|CAR72026.1| polypeptide deformylase [Mycobacterium leprae Br4923] Length = 197 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 16/164 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P++ + +++ LI M + M + G+GLAA QIG Sbjct: 1 MAIAPIRIVGDPVLHTPTAPVQVAADGSLPANLNGLISTMYDTMDAAHGVGLAANQIGYG 60 Query: 56 YRLVVIDLQD----HAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKR 106 R+ V D + A R+ V INP +I D EGCLS+P + R Sbjct: 61 LRVFVYDCAEDCRQTARRRG--VVINPILETSEIPETMPDPDTDNEGCLSVPGESFPIGR 118 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + V +D + GL A LQHE HL+G L++D+L Sbjct: 119 AQWARVTGLDADGNPVTTEGTGLFARMLQHETGHLDGFLYLDYL 162 >gi|223043772|ref|ZP_03613815.1| polypeptide deformylase [Staphylococcus capitis SK14] gi|222442869|gb|EEE48971.1| polypeptide deformylase [Staphylococcus capitis SK14] Length = 162 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+L++ S+ + + + + +L+ ++ + +Y + ++A QIGV R+ + Sbjct: 1 MTVKKLVKSTHPLLKKESKTVNQYDDQLKSLLKDLEDTLYEEEAAAISAPQIGVNQRVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + INP I ++SD+ EG +S+P+ +V RS I ++ D N Sbjct: 61 IDME----LEGLLQLINPVIKSYSDEEITDLEGSVSLPNVFGEVTRSKMIVLQCNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DHLNGILF D +R+ Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTDKANRI 149 >gi|329912478|ref|ZP_08275758.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] gi|327545607|gb|EGF30770.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] Length = 178 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 10/153 (6%) Query: 11 DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 DP L RV+ P+ + ++ M L I +M E M++ +G GLAA QIGV +LV+ +++ Sbjct: 11 DPRLLRVAEPVTEFDTPAMRLLIADMFETMHAVNGAGLAAPQIGVNLQLVIYGSRNNVRY 70 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A + INP + SD+ EGCLS+P R V R + + Y + +I Sbjct: 71 PEAPEVPETILINPVLTPLSDELVENWEGCLSVPGLRGVVPR--WQALHYEGVDQFGAVI 128 Query: 125 Y--ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 DG A +QHE DHL G+L+ ++ R Sbjct: 129 SRDVDGFHARVVQHECDHLIGVLYPMRVTDFSR 161 >gi|255003823|ref|NP_080789.2| peptide deformylase-like protein [Mus musculus] Length = 231 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR V+ P+E ++ L+ M++VM +GL+A Q+GV +++ ++ D Sbjct: 60 DPVLRVVAAPVEPEQLAGPELQRLVGRMVQVMRRRGCVGLSAPQLGVPLQVLALEFPDKL 119 Query: 68 HRK-----------NPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R P V +NP + + EGC S+ + A V R + + Sbjct: 120 LRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 179 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D + + A G A +QHE+DHL G LFID + Sbjct: 180 GLDPKGEPVVWSASGWTARIIQHEMDHLQGCLFIDKM 216 >gi|291456210|ref|ZP_06595600.1| peptide deformylase [Bifidobacterium breve DSM 20213] gi|291381487|gb|EFE89005.1| peptide deformylase [Bifidobacterium breve DSM 20213] Length = 217 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQQTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P V INPK + + + EGCLS Y+A KR IT + Sbjct: 90 DHVRDDEDDPREIAEFPFHVIINPKYTPVGEKTTSFFEGCLSFDGYQAVRKRWLDITAEW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + +H G A QHE DHL+G L+ID Sbjct: 150 DDEDGKHHSEQLHGWPARIFQHETDHLSGELYID 183 >gi|333023046|ref|ZP_08451110.1| putative peptide deformylase [Streptomyces sp. Tu6071] gi|332742898|gb|EGJ73339.1| putative peptide deformylase [Streptomyces sp. Tu6071] Length = 214 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 18/171 (10%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + P E + + L+ M M G+GLAA QIGV RL V Sbjct: 25 PIVAAGDPVLRTPAAPYEGQLPEALLSRLLAAMRRTMREAPGVGLAAPQIGVPLRLAV-- 82 Query: 63 LQDHAHRKNPM------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 L+D A + V +NP + + + EGCLS+P ++A V R A + Sbjct: 83 LEDPATVPEEVRRVREREPLPYRVLVNPVCEGVGERRAAFYEGCLSVPGWQAVVARHAVV 142 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 +R D + + G A +QHE DHL+G L++D L R + + + Sbjct: 143 RLRAEDEHGRGLDEEVRGWPARIVQHETDHLDGTLYVDRA--LPRSLTSNE 191 >gi|322690616|ref|YP_004220186.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320455472|dbj|BAJ66094.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] Length = 217 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P V INP SD + + EGCLS Y+A KR IT + Sbjct: 90 DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + +H G A QHE DHL+G L+ID Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYID 183 >gi|225387512|ref|ZP_03757276.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme DSM 15981] gi|225046442|gb|EEG56688.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme DSM 15981] Length = 155 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 7/139 (5%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAV-QIGVLYRLVVIDLQDHAHR 69 D LR+ + ++ ++ + L+D+M++ +++T+G A Q+G+L RLVVID + Sbjct: 11 DEALRKRCKEVKNVDERVRALLDDMMDTLHATEGAAALAANQVGILKRLVVID-----YC 65 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + +NP +I D EGCLS P A R +TV+ +D N + ++ +G Sbjct: 66 GCVLKLVNP-VIVGRDGVQECLEGCLSFPGRIATTIRPQSVTVQALDENGKEVLLTGEGE 124 Query: 130 LATCLQHELDHLNGILFID 148 +A C HEL+HL+G +F+D Sbjct: 125 MAKCYCHELEHLDGEVFLD 143 >gi|257068838|ref|YP_003155093.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] gi|256559656|gb|ACU85503.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] Length = 163 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 9/170 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR PI I L+ ++ + + G+AA QIGV R Sbjct: 1 MTIRPIRIVGDPVLRTPCDPIRTITEGTRTLVRDLKDTVDDEGRAGVAANQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP I+ S++ EGCLS+P RSA+ MD + Sbjct: 61 WHFVETGEIG---CILNPVIVELSEELQHDDEGCLSVPGLFYPRTRSAYARCVGMDVEGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + +GL+A +QHE+ HL+G L+ID L R + K L Q+R+ Sbjct: 118 EIELAGEGLVARLIQHEVGHLDGELYIDGLER------SVKKRALRQIRE 161 >gi|91784124|ref|YP_559330.1| peptide deformylase [Burkholderia xenovorans LB400] gi|296158911|ref|ZP_06841739.1| peptide deformylase [Burkholderia sp. Ch1-1] gi|91688078|gb|ABE31278.1| Formylmethionine deformylase [Burkholderia xenovorans LB400] gi|295890786|gb|EFG70576.1| peptide deformylase [Burkholderia sp. Ch1-1] Length = 177 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R++ P++ ++ ++ L+ +M E M+ +G GLAA QIGV ++V+ + Sbjct: 10 DPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVIFGFGHNERY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP I S D EGCLS+P R V R + I D + Sbjct: 70 PDAPPVPETVLINPTITPVSQDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151 >gi|23335362|ref|ZP_00120599.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|23465752|ref|NP_696355.1| peptide deformylase [Bifidobacterium longum NCC2705] gi|189439807|ref|YP_001954888.1| peptide deformylase [Bifidobacterium longum DJO10A] gi|227546365|ref|ZP_03976414.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622367|ref|ZP_04665398.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133213|ref|YP_004000552.1| def2 [Bifidobacterium longum subsp. longum BBMN68] gi|322688630|ref|YP_004208364.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] gi|39931158|sp|Q8G534|DEF1_BIFLO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|23326438|gb|AAN24991.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189428242|gb|ACD98390.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|227213346|gb|EEI81218.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514364|gb|EEQ54231.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517274|emb|CBK70890.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. longum F8] gi|311772414|gb|ADQ01902.1| Def2 [Bifidobacterium longum subsp. longum BBMN68] gi|320459966|dbj|BAJ70586.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] Length = 217 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P V INP SD + + EGCLS Y+A KR IT + Sbjct: 90 DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + +H G A QHE DHL+G L+ID Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYID 183 >gi|312132641|ref|YP_003999980.1| def1 [Bifidobacterium longum subsp. longum BBMN68] gi|311773592|gb|ADQ03080.1| Def1 [Bifidobacterium longum subsp. longum BBMN68] Length = 162 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++LE + GL+A QIGV R Sbjct: 1 MSIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP ++ EGCLS+P +R+ + VR +D + Sbjct: 61 YNIDGKVG-----YVLNP-VLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 ++ GL+ LQHE DHL+G +++D L + +R Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEER 149 >gi|213692889|ref|YP_002323475.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524350|gb|ACJ53097.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459064|dbj|BAJ69685.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 217 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P V INP SD + + EGCLS Y+A KR IT + Sbjct: 90 DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + +H G A QHE DHL+G L+ID Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYID 183 >gi|317471201|ref|ZP_07930569.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] gi|316901307|gb|EFV23253.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] Length = 153 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 9/140 (6%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69 DPIL++ + + +++ +D++++ ++S + G LAA Q G+L R++VID H Sbjct: 11 DPILKKKCKTVPEVDDKARQQLDDLMDTLHSAENGAALAANQAGILRRMIVID-----HE 65 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD-G 128 + +NP I+ S EGCLS P+ R A +TV +D + H++ Y G Sbjct: 66 GYYLKLVNPVIVESSGSQECV-EGCLSFPNRFGKTIRPAKVTVEALDEHG-HEVSYTVVG 123 Query: 129 LLATCLQHELDHLNGILFID 148 +A C HE+DHL+G +FID Sbjct: 124 EMAKCFCHEIDHLDGEVFID 143 >gi|291543910|emb|CBL17019.1| peptide deformylase [Ruminococcus sp. 18P13] Length = 153 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 6/146 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL + R +E+ + + LID+M E + G+GLAA Q+G+L R+ V Sbjct: 1 MAIRNIVTSEDPILSKPCRTVEEFDDKLGQLIDDMFETLEKAKGLGLAAPQVGILKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + +NP I+ S EGCLS P+ V R +R D + + Sbjct: 61 MDVGD-----GRVEAVNPVILKESGKQRDV-EGCLSCPNQWGYVTRPNKCRLRAYDRHGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + L C HE DHL+G+LF Sbjct: 115 EFTMDLKELGCRCACHETDHLDGLLF 140 >gi|118470670|ref|YP_885236.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155] gi|158512462|sp|A0QQP8|DEF_MYCS2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|118171957|gb|ABK72853.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155] Length = 197 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 14/163 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ + D+ LI +M + M + +G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTEPVPVGPDGSLPDDLPALIQDMFDTMDAANGVGLAANQIGVA 60 Query: 56 YRLVVID---LQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRS 107 RL V D + R+ V INP + T D +EGCLS+P R+ Sbjct: 61 KRLFVYDCAPTRGQTTRRR-GVVINPVLETSEVPETMPDPDEDEEGCLSVPGENFPTGRA 119 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + + + L A LQHE HL+G L++D L Sbjct: 120 DWARVTGLDADGSPITLEGEDLFARMLQHETGHLDGFLYLDRL 162 >gi|297538577|ref|YP_003674346.1| peptide deformylase [Methylotenera sp. 301] gi|297257924|gb|ADI29769.1| peptide deformylase [Methylotenera sp. 301] Length = 182 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 15/167 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ +P L + P+EK ++ ++ +LI ++ + M + +G G+AA QIG R+V Sbjct: 1 MAVKPVLRMGEPCLLLKAAPVEKFDTPELHSLIQDLEDTMQAMNGAGIAAPQIGESLRVV 60 Query: 60 VIDLQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 + + KNP V INP I DD EGCLS+P R V R + Sbjct: 61 IFGQKSSDENKNPRYPDADAVPYTVLINPVITPIGDDVEDGWEGCLSVPGMRGIVPR--Y 118 Query: 110 ITVRYMDCNAQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLK 154 + + Y + I G A +QHE DHL+G+L+ + LK Sbjct: 119 LRLHYAGFDQYGNPIDRLVSGFHARVVQHECDHLDGVLYPMRIKNLK 165 >gi|145342766|ref|XP_001416260.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus CCE9901] gi|144576485|gb|ABO94553.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus CCE9901] Length = 274 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 18/157 (11%) Query: 12 PILRRVSRPIE--KINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-----L 63 P LR V+R ++ +I+S +I LI ML V + G+GLAA Q+G R+VV++ + Sbjct: 61 PALRDVARAVDVDEIDSTEIQELIAEMLRVCRAR-GVGLAAPQLGARRRVVVLEDTTEGM 119 Query: 64 QDHAHRKNPM---------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D M V +NP + D + + EGCLS+ YRA V+R + R Sbjct: 120 SDETSEALAMKRREAFRAKVIVNPTLTPIGDASAAFFEGCLSVAGYRAVVRRHLRVRCRG 179 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + A G A LQHE+DHL+G+L+ D + Sbjct: 180 YGGDGKPVDFEAVGWEARILQHEVDHLDGVLYTDRME 216 >gi|195499829|ref|XP_002097113.1| GE24678 [Drosophila yakuba] gi|194183214|gb|EDW96825.1| GE24678 [Drosophila yakuba] Length = 238 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 17/159 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR+ + P E ++S ++ +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 56 DPVLRQQAAVVPKEHLDSPELKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRI 115 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ P VFINP + + + EGC+S+ Y A+V+R + + Sbjct: 116 RKELPEAVYQTRQMSELPLTVFINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGVKLT 175 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + G A QHE+DHL G L+ DH+ R Sbjct: 176 GLDQQGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|159899991|ref|YP_001546238.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] gi|159893030|gb|ABX06110.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] Length = 175 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 11/170 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54 M PL+ +P+LR+ + P + + ++ ++++M + + G G+AA QIGV Sbjct: 1 MAVVPLIELGNPLLRQPATPFADPTSPEVARILNDMRDTLADMRQRIGYGRGIAAPQIGV 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 L RL++ID D +V +NP+ +S + E C S P V+R +TV Sbjct: 61 LKRLILIDTPD-----TNLVLVNPRFERWSREEDERYESCFSFPGIWGLVQRPLGVTVVA 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + Q I A G L+ +QHE+DHL+G +++D L T++ K Sbjct: 116 YTLAGEEQRIEASGSLSRIIQHEMDHLDGFVWLDRGPDLHSLCTTQEYEK 165 >gi|296453662|ref|YP_003660805.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301] gi|296183093|gb|ADG99974.1| Peptide deformylase [Bifidobacterium longum subsp. longum JDM301] Length = 217 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P V INP SD + + EGCLS Y+A KR IT + Sbjct: 90 DHVRDDEDDPREIAEFPFHVIINPSYRPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + +H G A QHE DHL+G L+ID Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYID 183 >gi|307729328|ref|YP_003906552.1| peptide deformylase [Burkholderia sp. CCGE1003] gi|307583863|gb|ADN57261.1| peptide deformylase [Burkholderia sp. CCGE1003] Length = 177 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R++ P++ ++ ++ LI +M E M+ +G GLAA QIGV ++V+ + Sbjct: 10 DPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIFGFGSNERY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP I S D EGCLS+P R V R + I D + Sbjct: 70 PDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151 >gi|257068124|ref|YP_003154379.1| peptide deformylase [Brachybacterium faecium DSM 4810] gi|256558942|gb|ACU84789.1| peptide deformylase [Brachybacterium faecium DSM 4810] Length = 188 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 7/160 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I L + +R + ++ ++ L+ +M E + G GLAA Q+G +RL V Sbjct: 1 MTVRPITIVGHKALTQRTRRVREVTDELRTLVADMFETNDAASGAGLAAPQVGSRWRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + V +NP + F D+ ++ EGCLS+P R V D Sbjct: 61 YSCPDASGTLRRGVVLNPVLERFGGIVLDEETL--EGCLSVPGEGFPTARHRGARVTGTD 118 Query: 117 CNAQHQIIYAD-GLLATCLQHELDHLNGILFIDHLSRLKR 155 + ++ + G+LA LQHE+DHL G L++D L+ +R Sbjct: 119 LDGAEVVVEDEGGVLARALQHEVDHLEGSLYLDRLAPARR 158 >gi|302878431|ref|YP_003846995.1| peptide deformylase [Gallionella capsiferriformans ES-2] gi|302581220|gb|ADL55231.1| peptide deformylase [Gallionella capsiferriformans ES-2] Length = 175 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 10/161 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++ D L V++P+ ++ + +++++M + M++ +G GLAA QIGV R+V+ Sbjct: 1 MAIKPVLRMGDARLLEVAKPVTDFSA-LQDVLNDMQDTMHALNGAGLAAPQIGVGLRVVI 59 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +++++ + V INP + D EGCLS+P R V R + +RY Sbjct: 60 FGVEENSRYPDAESVPYTVLINPVVTPIDDLMEDDWEGCLSVPGLRGRVAR--YHAIRYQ 117 Query: 116 DCNAQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLK 154 +A+ I G A +QHE DHL+G+L+ ++ L+ Sbjct: 118 GVDAKGAPIDRSVSGFHARVVQHECDHLDGVLYPMRMTDLR 158 >gi|195499832|ref|XP_002097114.1| GE24677 [Drosophila yakuba] gi|194183215|gb|EDW96826.1| GE24677 [Drosophila yakuba] Length = 196 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 89/157 (56%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP+LR+ + P E I+S +I +I+ M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 14 DPVLRQRAEEVPPEDIDSMEINQIIEGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 73 Query: 66 --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + RK P+ VFINP++ S + + EGC+S+ + A+V+R + +R Sbjct: 74 QEQFKPEVYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGFSAEVERYDKVRIR 133 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + +G A QHE+DHLNG +++D + Sbjct: 134 GIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKM 170 >gi|209522380|ref|ZP_03270994.1| peptide deformylase [Burkholderia sp. H160] gi|209497186|gb|EDZ97427.1| peptide deformylase [Burkholderia sp. H160] Length = 177 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R++ P++ ++ ++ L+ +M E M++ +G GLAA QIGV ++V+ + Sbjct: 10 DPRLLRIAEPVDHFDTPELHRLVADMFETMHAANGAGLAAPQIGVDLQVVIFGFGSNERY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP I S D EGCLS+P R V R + I D Sbjct: 70 PDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGFDQFGNPIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151 >gi|327441213|dbj|BAK17578.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris StLB046] Length = 185 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 22/158 (13%) Query: 12 PILR-RVSRPIEKINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58 P LR R ++++ L D+ML+ + ++ GIGLAA Q+ L R+ Sbjct: 13 PTLRTRAEEVTFPLSAEDRKLADDMLQYLINSQNPEIAEKYNLRGGIGLAANQVNSLKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS----IPDYRADVKRSAFITV 112 + L+D V +NPKI++ S + EGCLS IP Y V R A ITV Sbjct: 73 FALHLEDENGELISFVAVNPKIVSHSVEQTYITSGEGCLSVDRAIPGY---VYRYARITV 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++M + + + + GL A QHELDHLNG++F D + Sbjct: 130 KFMTVDGEEKKMRLSGLPAIAFQHELDHLNGVMFYDRI 167 >gi|73541574|ref|YP_296094.1| peptide deformylase [Ralstonia eutropha JMP134] gi|72118987|gb|AAZ61250.1| Formylmethionine deformylase [Ralstonia eutropha JMP134] Length = 177 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 6/135 (4%) Query: 18 SRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKN 71 +RP+E+ N+ ++ LI++M + M +G GLAA QIGV ++V+ + A + Sbjct: 17 ARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIFGFDRNPRYPDAPKVP 76 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V INP + SDD EGCLS+P R V R + D A+G A Sbjct: 77 KTVLINPMLEMLSDDLEDGWEGCLSVPGLRGVVPRHTRLRYSGYDLMGGSIDRVAEGFHA 136 Query: 132 TCLQHELDHLNGILF 146 +QHE DHL GIL+ Sbjct: 137 RVVQHECDHLQGILY 151 >gi|299067454|emb|CBJ38653.1| Peptide deformylase [Ralstonia solanacearum CMR15] Length = 177 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 77/151 (50%), Gaps = 10/151 (6%) Query: 4 KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 +P++ D L RV++P+ + + ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 3 RPILKMGDSRLLRVAKPVLRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFG 62 Query: 62 ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D A V INP I SD EGCLS+P R V R + VRY Sbjct: 63 FDRNDRYPDAPAVPKTVLINPTIEPLSDTMEDGWEGCLSVPGLRGVVPR--YTRVRYTGY 120 Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILF 146 + I A+G A +QHE DHL GIL+ Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILY 151 >gi|323526493|ref|YP_004228646.1| peptide deformylase [Burkholderia sp. CCGE1001] gi|323383495|gb|ADX55586.1| peptide deformylase [Burkholderia sp. CCGE1001] Length = 177 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R++ P++ ++ ++ LI +M E M+ +G GLAA QIGV ++V+ + Sbjct: 10 DPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIFGFGSNERY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP I S D EGCLS+P R V R + I D + Sbjct: 70 PDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151 >gi|116783457|gb|ABK22950.1| unknown [Picea sitchensis] Length = 305 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+L + +++I S+ I +ID+M+ VM++ G GLAA Q+GV +++V++ Sbjct: 124 DPVLHECAAEVAVDEIGSERIQKIIDDMIAVMWNAPGCGLAAPQLGVPLQIIVLEDKEEY 183 Query: 63 ------LQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A ++P ++ INPK+ + + + EGCLS+ +R V+R + V Sbjct: 184 IRFTLKEETEAQERHPFDLLIIINPKLKSKGIKTAKFFEGCLSVNGFRGLVERHLEVEVT 243 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I A G A LQHE DHL G+L++D L Sbjct: 244 GFGRDGLPIKINATGWKARILQHECDHLAGLLYVDKL 280 >gi|170692137|ref|ZP_02883300.1| peptide deformylase [Burkholderia graminis C4D1M] gi|170142567|gb|EDT10732.1| peptide deformylase [Burkholderia graminis C4D1M] Length = 177 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R++ P++ ++ ++ LI +M E M+ +G GLAA QIGV ++V+ + Sbjct: 10 DPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIFGFGSNERY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP I S D EGCLS+P R V R + I D + Sbjct: 70 PDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151 >gi|168014244|ref|XP_001759662.1| predicted protein [Physcomitrella patens subsp. patens] gi|162689201|gb|EDQ75574.1| predicted protein [Physcomitrella patens subsp. patens] Length = 194 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 18/158 (11%) Query: 11 DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+L + + E I S I I++M++VM + G+GLAA QIG+ +++V++ Sbjct: 6 DPVLHEPAEEVMREDIGSARIEKAINDMVDVMRAGPGVGLAAPQIGIPLQIIVLEDTKEL 65 Query: 63 ------LQDHAHRKNP---MVFINPKI-ITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + A ++ P +V INPK+ + S + + EGCLS+ +RA V+R + V Sbjct: 66 MSYTSPEECEAQQRTPFDLLVIINPKLEMKASGGTAFFFEGCLSVAGHRALVERHLEVEV 125 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + Q A G A LQHE DHL G+L++D + Sbjct: 126 TGLGRDGQPLHFTAKGWKARILQHEYDHLQGLLYVDRM 163 >gi|37626151|gb|AAQ96527.1| hypothetical protein [Vibrio phage VP16T] Length = 137 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 63/121 (52%), Gaps = 7/121 (5%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 D+ +L+ +M M + GIGLA Q+GVL R++V+ INP IIT Sbjct: 21 GEDVKDLVLDMTAAMTAAGGIGLAGNQVGVLKRIIVLRCPTFKG-----CVINP-IITRH 74 Query: 85 DDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 D VY EGCLS P KR + V D + Q I A GL A CLQHE+DHLNG Sbjct: 75 TDGHVYSPEGCLSYPGKTVAKKRRNKVVVEGYDMDWQPITIAAKGLTAFCLQHEIDHLNG 134 Query: 144 I 144 + Sbjct: 135 V 135 >gi|297162485|gb|ADI12197.1| peptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 14/159 (8%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V P+LRR + P E ++++ ++ L+ M E M + G+GLAA QIG+ R+ VI+ Sbjct: 21 PIVAAGVPVLRRPALPYEGQLSAGQLDRLVRAMRETMQAAPGVGLAAPQIGIPLRIAVIE 80 Query: 63 LQD-------HAHRKNPMVF---INPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFI 110 A + P+ F +NP D + + EGCLS+P ++A V R I Sbjct: 81 DPAEVSAEVREARGRVPLPFRVLVNPSYEPVGDPGRRAAFFEGCLSVPGWQAVVARPERI 140 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +R D + G A +QHE DHL+G L++D Sbjct: 141 RLRGQDERGRELDEEFAGWPARIVQHETDHLDGTLYLDR 179 >gi|320169511|gb|EFW46410.1| polypeptide deformylase [Capsaspora owczarzaki ATCC 30864] Length = 196 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 14/142 (9%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNP----------- 72 +S LID M+ M T+G+G+AAVQ+G + I+ H P Sbjct: 43 SSATQALIDRMIATMRRTEGVGIAAVQLGDNRAIACIEFTAKHLAEATPEMAATHKMEAV 102 Query: 73 --MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 V +NP+++ S D EGCLS+P +A V R + + +D N Q + G Sbjct: 103 PLTVMVNPRVLRASSDLVEGAEGCLSVPGMQAIVFRPRHVAIDCLDRNGAPQTLKLSGWS 162 Query: 131 ATCLQHELDHLNGILFIDHLSR 152 A HE+DHL G LF D + R Sbjct: 163 ARIAMHEVDHLKGELFTDKMER 184 >gi|295099934|emb|CBK89023.1| peptide deformylase [Eubacterium cylindroides T2-87] Length = 184 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQI 52 +++ DP +R+ SR +E +N + L++ +LE V STD +G+AA+Q+ Sbjct: 8 IILDTDPRIRQKSRKVELPLNQEDKELLEALLEYVRNSTDEEIAERDNLEPAVGIAAIQV 67 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADVKRSAF 109 GV +L+ + + D + NPKII+ S + + EGCLS+ + + V R A Sbjct: 68 GVPKKLIAVVVPDEEGNVQEVALANPKIISESVQNAYLDNGEGCLSVKEVHEGHVFRHAR 127 Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 I VR D + I A+G A LQHE+DHL+GILF D + + Sbjct: 128 IKVRGYDLIKDDNVTISAEGYFAIALQHEIDHLSGILFYDRIDK 171 >gi|312962671|ref|ZP_07777160.1| peptide deformylase [Pseudomonas fluorescens WH6] gi|311283046|gb|EFQ61638.1| peptide deformylase [Pseudomonas fluorescens WH6] Length = 179 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 12/152 (7%) Query: 14 LRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 L R++ P+ E +S ++ LID+M + M G+GLAA QIGV +LV+ + A + Sbjct: 13 LLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIFGFE--ASER 70 Query: 71 NP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P + INP I S EGCLS+P R V R I D + + Sbjct: 71 YPDAPPVPQTILINPLITPLSPVLEEGYEGCLSVPGLRGAVNRYQQIRYEGFDPKGEPIV 130 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +ADG A +QHE DHL G L+ ++ + Sbjct: 131 RFADGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|195330059|ref|XP_002031726.1| GM26159 [Drosophila sechellia] gi|194120669|gb|EDW42712.1| GM26159 [Drosophila sechellia] Length = 196 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP+LR+ + P E ++S +I +ID M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 14 DPVLRQRAEEVPPEDVDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 73 Query: 66 --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + RK P+ VFINP + S + + EGC+S+ Y A V+R + +R Sbjct: 74 QEQFKPEIYEERKMSTLPLAVFINPVLEIISSQVNKHPEGCMSVRGYSAQVERYDKVRIR 133 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + +G A QHE+DHLNG +++D + Sbjct: 134 GIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKM 170 >gi|319442383|ref|ZP_07991539.1| polypeptide deformylase [Corynebacterium variabile DSM 44702] Length = 215 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 32/189 (16%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-------IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 P+VI DP+L + P+ + +D + LI +M E + G+GLAA Q+GV R Sbjct: 5 PVVICGDPVLHTPTTPVTEPAADQLGEGTELSTLIADMYETLELAHGVGLAANQVGVGLR 64 Query: 58 LVVIDLQD----HAHRK---------NPM---VFINPKIITFS-----DDFSVYQEGCLS 96 + V D D RK PM INP + T D EGCLS Sbjct: 65 VFVYDCPDIDGPEGTRKTQEEVDAQGGPMRRGCVINPVLETSEIPETMPDPEDDVEGCLS 124 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SR 152 +P Y R+ + V D + + + G A CLQHE HL+G L+ID L +R Sbjct: 125 VPGYDYPTGRADWARVTGTDEHGEPTSVEGYGFFARCLQHETGHLDGHLYIDMLIGRNAR 184 Query: 153 LKRDMITKK 161 + M+ ++ Sbjct: 185 AAKKMVKRE 193 >gi|262200670|ref|YP_003271878.1| peptide deformylase [Gordonia bronchialis DSM 43247] gi|262084017|gb|ACY19985.1| peptide deformylase [Gordonia bronchialis DSM 43247] Length = 200 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 19/162 (11%) Query: 5 PLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+ I +P+L R + P+ K +++++ L+D+M + M + G+GLAA Q+GV R+ Sbjct: 5 PICIIGEPVLHRRTEPVPLDDAGKPSAEVIALLDDMYDTMDAAHGVGLAANQVGVGLRMF 64 Query: 60 VIDLQDH----AHRK-----NPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 V D + R+ NP++ + P+ + DD EGCLS+P + R+ Sbjct: 65 VYDCPEGERYVPERRRGEVINPVLETSEIPETMPDPDD---NDEGCLSVPGEQFPTGRAD 121 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D ++ G A LQHE HL+G L++D L Sbjct: 122 WARVTGVDRTGAEVVVEGTGFFARMLQHETGHLDGFLYVDVL 163 >gi|302555792|ref|ZP_07308134.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302473410|gb|EFL36503.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 214 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ +++ ++ + M + G+GLAA Q+GV R+ VI+ Sbjct: 25 PIVAAGDPVLRRGTEPYDGQLAPELLARFVEALRVTMRAAPGVGLAAPQVGVPLRIAVIE 84 Query: 63 LQDH-------AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + P+ F +NP + + EGCLS+P ++A V R A + + Sbjct: 85 DPAPVPEEVRLARGRVPLPFRVLVNPAYAPVGGARAAFFEGCLSVPGWQAVVARPAEVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 D + + G A +QHE DHL+G+L++D Sbjct: 145 TGQDEHGRALDEVFTGWPARIVQHETDHLDGVLYLDR 181 >gi|206971224|ref|ZP_03232175.1| peptide deformylase [Bacillus cereus AH1134] gi|206733996|gb|EDZ51167.1| peptide deformylase [Bacillus cereus AH1134] Length = 184 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57 +PILR V+ + S+ ++N D + YS GIGLAA QIGV + Sbjct: 12 NPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|291513863|emb|CBK63073.1| peptide deformylase [Alistipes shahii WAL 8301] Length = 202 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRA 102 G+G+AA Q+G+L R++ + D P F +NP+I+ S + + +EGCLSIP Sbjct: 89 GVGIAAPQVGILRRMIAVQRFDKP--GEPFEFYLNPEIVESSAETAPGREGCLSIPGLAG 146 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 V R+ I +RY D + DG A QHE DHL+GIL+ D Sbjct: 147 TVVRAQRIVLRYPDERFAEKTETIDGFTAVIFQHETDHLDGILYTDR 193 >gi|195055502|ref|XP_001994656.1| GH17360 [Drosophila grimshawi] gi|193892419|gb|EDV91285.1| GH17360 [Drosophila grimshawi] Length = 203 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 DP+LR + + E+I S +I ++++ M++V+ D +G+AA Q+GV R++V++ ++ Sbjct: 21 DPVLRLCAEEVSAERIASQEIKDIVEQMVKVLRHYDCVGVAAPQLGVPMRIIVMEFREGK 80 Query: 66 --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + RK P+ +FINP+I SD + EGC+S+ Y A V R + V Sbjct: 81 REQFTPEVYEERKMSHLPLTIFINPQIEIISDKQHTHPEGCMSVRGYSAKVSRYDRVRVT 140 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + G A QHE+DHLNGI++ID + Sbjct: 141 GIGILGTPSELELVGWSARIAQHEMDHLNGIVYIDRM 177 >gi|241764867|ref|ZP_04762871.1| peptide deformylase [Acidovorax delafieldii 2AN] gi|241365616|gb|EER60346.1| peptide deformylase [Acidovorax delafieldii 2AN] Length = 197 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 11/145 (7%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R+++P++K ++ ++ LI +MLE M + G GLAA QIGV ++V+ + R Sbjct: 29 DPRLLRIAQPVQKFDTPELHQLIRDMLETMRAAQGAGLAAPQIGVDLQVVIFGSNEPNRR 88 Query: 70 KN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P V +NP I +D EGCLS+P R V R ++ +RY +A Sbjct: 89 YPDRPLVPPTVLVNPVITPLGEDEEEDWEGCLSVPGLRGKVPR--WLHIRYSGFDAHGSP 146 Query: 124 I--YADGLLATCLQHELDHLNGILF 146 I A+G A +QHE DHL G L+ Sbjct: 147 IDRVAEGFHARVVQHECDHLMGKLY 171 >gi|254490724|ref|ZP_05103908.1| peptide deformylase [Methylophaga thiooxidans DMS010] gi|224464079|gb|EEF80344.1| peptide deformylase [Methylophaga thiooxydans DMS010] Length = 178 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 12 PILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 P+LR+ + P+ I + +L + G+G+AA Q+G+ + + L H + + Sbjct: 13 PLLRQRAEPVYDILAPAFQAQAKALLSFVIEKGGMGIAAPQVGISQQFFI--LSSHPNSR 70 Query: 71 -------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P INP+ I SD + EGCLS+P RA V R ITVRY Sbjct: 71 YPYAPDVPPFFVINPERIAHSDTSNKDWEGCLSLPGIRALVPRFDDITVRYQTLEGDTVE 130 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 DG LA QHE DHLNG +F+D + M+ K+ K + Sbjct: 131 KMYDGFLARVFQHEHDHLNGHVFLDRVESNYDVMMEKEWQKQI 173 >gi|195330061|ref|XP_002031727.1| GM26160 [Drosophila sechellia] gi|194120670|gb|EDW42713.1| GM26160 [Drosophila sechellia] Length = 238 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 17/159 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR+ + P E ++S +I +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 56 DPVLRQQAALVPKEHMDSPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRI 115 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ P VFINP + + + EGC+S+ Y A+V+R + + Sbjct: 116 RKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGVKLT 175 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + G A QHE+DHL G L+ DH+ R Sbjct: 176 GLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|325982985|ref|YP_004295387.1| peptide deformylase [Nitrosomonas sp. AL212] gi|325532504|gb|ADZ27225.1| peptide deformylase [Nitrosomonas sp. AL212] Length = 177 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ +P+L +V++P+++ ++ ++ LI +M + M +G GLAA QIGV ++V Sbjct: 1 MAIKPVLKMGEPLLLQVAKPVDRFDTPELHELIQDMQDTMAYLNGAGLAAPQIGVSLQVV 60 Query: 60 VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + + + V +NP + SD+ EGCLS+P R V R + + Sbjct: 61 IFGFEKNQRYPDADEVPFTVLLNPHLTPLSDEKEDGWEGCLSVPGLRGIVPRYTNLHYQG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 D +G A +QHE DHL GIL+ Sbjct: 121 FDQYGSAIDRNVNGFHARVVQHECDHLQGILY 152 >gi|111019169|ref|YP_702141.1| peptide deformylase [Rhodococcus jostii RHA1] gi|110818699|gb|ABG93983.1| peptide deformylase [Rhodococcus jostii RHA1] Length = 196 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 13/157 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I DP+L + + + +++ +I +M + M + +G+GLAA Q+G+ RL V D Sbjct: 5 PIRIVGDPVLHEPTEAVSQSPAELAEIIADMYDTMDAANGVGLAANQVGLPLRLFVYDCP 64 Query: 65 D-----HAHRK-----NPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113 D A R+ NP++ + + T D D V EGCLS+P + R+ + V Sbjct: 65 DVDGDGKALRRRGCVVNPVLETSERPETMPDPDDDV--EGCLSVPGEQFPTGRAEWAKVT 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D + I G A LQHE+ HL+G L++D L Sbjct: 123 GTDADGNAVEIEGHGFFARMLQHEVGHLDGFLYVDML 159 >gi|91788452|ref|YP_549404.1| peptide deformylase [Polaromonas sp. JS666] gi|91697677|gb|ABE44506.1| Peptide deformylase [Polaromonas sp. JS666] Length = 179 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 13/146 (8%) Query: 11 DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L RV++P+ ++D ++L + +M + M + DG GLAA QIGV ++V+ D + Sbjct: 11 DPRLFRVAQPVAAFDTDALHLLVSDMFDTMRAADGAGLAAPQIGVNLQVVIFG-ADQVNP 69 Query: 70 KNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P V +NP I S D EGCLS+P R V R F +RY + Sbjct: 70 RYPDAPLVPRTVLLNPVITPLSADEEEGWEGCLSVPGLRGLVPR--FSHIRYTGFDQYGD 127 Query: 123 II--YADGLLATCLQHELDHLNGILF 146 I DG A +QHE DHL G L+ Sbjct: 128 PIDRTVDGFHARVVQHECDHLMGKLY 153 >gi|124023604|ref|YP_001017911.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303] gi|123963890|gb|ABM78646.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT 9303] Length = 181 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 7/157 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K ++ +P LR+VS+ ++ ++++ I++LI ++ + + + G GLAA QIG+ R+V Sbjct: 1 MAVKEILRMGNPQLRQVSKVVDDVSAELIISLIKDLQDTVKAHQGAGLAAPQIGIPLRVV 60 Query: 60 VIDLQDHAHR--KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + R + P + INP + D EGCLS+P R V R + I R Sbjct: 61 LFGGGGPNPRYPEAPSIPQTLLINPVLTPIDSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + +G A +QHE DHL+G+LF D L Sbjct: 121 ALNEDGLEIEHCLEGFPARVIQHECDHLDGVLFTDRL 157 >gi|311063862|ref|YP_003970587.1| peptide deformylase [Bifidobacterium bifidum PRL2010] gi|310866181|gb|ADP35550.1| Peptide deformylase [Bifidobacterium bifidum PRL2010] Length = 217 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 5 PLVIFPDPILRRVS-RPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ + + +++ +N LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQQTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P V INP D + EGCLS Y+A +R IT R+ Sbjct: 90 DHVRDDEDDPREIAEFPFHVIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDITARW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D N + G A QHE DHL+G L+ID Sbjct: 150 ADENGKQHEERLHGWPARIFQHETDHLSGELYID 183 >gi|317482560|ref|ZP_07941575.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|316915982|gb|EFV37389.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] Length = 217 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAAPQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P V INP SD + + EGCLS Y+A KR IT + Sbjct: 90 DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + +H G A QHE DHL+G L+ID Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYID 183 >gi|207723348|ref|YP_002253747.1| polypeptide deformylase (partial sequence) protein [Ralstonia solanacearum MolK2] gi|206588547|emb|CAQ35510.1| probable polypeptide deformylase (partial sequence) protein [Ralstonia solanacearum MolK2] Length = 181 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 10/153 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 V +P++ D L RV++ +++ + ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 5 VIRPILKMGDSRLLRVAQSVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 64 Query: 61 IDL-QDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ + P V INP I SD+ EGCLS+P R V R + +RY Sbjct: 65 FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPR--YTRLRYT 122 Query: 116 DCNAQHQII--YADGLLATCLQHELDHLNGILF 146 + I A+G A +QHE DHL GIL+ Sbjct: 123 GYDQHGHAIDRVAEGFHARVVQHECDHLQGILY 155 >gi|306836963|ref|ZP_07469913.1| peptide deformylase [Corynebacterium accolens ATCC 49726] gi|304567146|gb|EFM42761.1| peptide deformylase [Corynebacterium accolens ATCC 49726] Length = 207 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 21/176 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P+VI +P+L + + P+E+ + ++ LI +M E M G+GLAA Q+G+ R Sbjct: 1 MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60 Query: 58 LVVIDLQD-------------HAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 L V D RK NP++ + T D EGCLS+P Sbjct: 61 LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155 R+ + V D + + G A CLQHE HL+G ++ D L R KR Sbjct: 121 GFPTGRADWARVTGKDEHGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKR 176 >gi|195571953|ref|XP_002103965.1| GD20713 [Drosophila simulans] gi|194199892|gb|EDX13468.1| GD20713 [Drosophila simulans] Length = 239 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 17/159 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR+ + P E ++S +I +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 56 DPVLRQQAALVPKEHMDSPEIGAIVEQMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRI 115 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ P VFINP + + + EGC+S+ Y A+V+R + + Sbjct: 116 RKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGVKLT 175 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + G A QHE+DHL G L+ DH+ R Sbjct: 176 GLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|50954573|ref|YP_061861.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951055|gb|AAT88756.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 188 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 7/157 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I D +L + + + ++ L+ M + M G+GLA Q+GV RL V Sbjct: 1 MAVLPIRITGDRVLHTRADEVTAFDRELRTLVAEMFDTMDEAPGVGLAGPQVGVPLRLFV 60 Query: 61 IDLQDH---AHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D HR NP+++ +P + T D EGCLS P R ++R+ + ++ Sbjct: 61 YGWTDDDEVLHRGVAINPVLWQSP-LETGPLDEDAECEGCLSFPGERFPLRRAERVILQA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +D + +G LA QHE DHL G+L++D L Sbjct: 120 VDLEGAPFEVRTEGWLARIFQHECDHLEGVLYVDRLG 156 >gi|229019177|ref|ZP_04176010.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1273] gi|229025422|ref|ZP_04181837.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1272] gi|228735877|gb|EEL86457.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1272] gi|228742117|gb|EEL92284.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1273] Length = 184 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 +PILR V+ + + + N + M+E V+ S D GIGLAA QIG+ + Sbjct: 12 NPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQIGISKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDTNGTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|239991763|ref|ZP_04712427.1| peptide deformylase [Streptomyces roseosporus NRRL 11379] Length = 206 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 4/163 (2%) Query: 6 LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + + +LRR + + + ++ L+D+M G GLAA QIGV ++ V D+ Sbjct: 26 ITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFVWDIT 85 Query: 65 DHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ +NP +I EGCLS+P V R VR D + Sbjct: 86 DDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDMDGAP 145 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +I G A CLQHE DHL+G L++D L+R +R ++M++ Sbjct: 146 LVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAE 188 >gi|239945304|ref|ZP_04697241.1| peptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291448765|ref|ZP_06588155.1| peptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291351712|gb|EFE78616.1| peptide deformylase [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 4/163 (2%) Query: 6 LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + + +LRR + + + ++ L+D+M G GLAA QIGV ++ V D+ Sbjct: 39 ITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFVWDIT 98 Query: 65 DHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ +NP +I EGCLS+P V R VR D + Sbjct: 99 DDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDMDGAP 158 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +I G A CLQHE DHL+G L++D L+R +R ++M++ Sbjct: 159 LVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAE 201 >gi|170755594|ref|YP_001780500.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra] gi|169120806|gb|ACA44642.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra] Length = 166 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 11/169 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M KP+++ D IL R+S I+K N D ++N + N + + G G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHNTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D H FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKTH-----YFINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + + +Y +G L+ QHE DHL+GIL + LK I K S Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164 >gi|187924438|ref|YP_001896080.1| peptide deformylase [Burkholderia phytofirmans PsJN] gi|187715632|gb|ACD16856.1| peptide deformylase [Burkholderia phytofirmans PsJN] Length = 177 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R++ P++ ++ ++ L+ +M E M+ +G GLAA QIGV ++V+ + Sbjct: 10 DPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVIFGFGHNERY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP I S D EGCLS+P R V R + I D + Sbjct: 70 PDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151 >gi|332529198|ref|ZP_08405162.1| peptide deformylase [Hylemonella gracilis ATCC 19624] gi|332041421|gb|EGI77783.1| peptide deformylase [Hylemonella gracilis ATCC 19624] Length = 179 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 15/147 (10%) Query: 11 DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L RV++P++ ++D ++L + ++L+ M++ +G GLAA QIGV R+V+ + + Sbjct: 11 DPRLLRVAQPVQAFDTDELHLLVSDLLDTMHAANGAGLAAPQIGVDLRVVIFG----SGQ 66 Query: 70 KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 NP V NP I SD+ EGCLS+P R V R I + D Sbjct: 67 TNPRYPDAPVVPRTVLCNPVITPLSDEEQHDWEGCLSVPGLRGVVPRWQRIRYQGFDQYG 126 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 +G A +QHE DHL+G L+ Sbjct: 127 DPIDRTVEGFHARVVQHECDHLDGKLY 153 >gi|229817674|ref|ZP_04447956.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM 20098] gi|229785463|gb|EEP21577.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM 20098] Length = 160 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++L+ + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLQTVDDPGRAGLSANQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ + +I +I EGCLS+P +R+ + VR +D + + Sbjct: 61 YNID------GKIGYILNPVIEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 ++ GL LQHE DHL+G +++D L + +R + M Sbjct: 115 EIVLEGHGLFGRMLQHECDHLDGHVYLDRLEKEERREAMRYM 156 >gi|224541764|ref|ZP_03682303.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM 15897] gi|224525368|gb|EEF94473.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM 15897] Length = 186 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 9/118 (7%) Query: 44 GIGLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLS 96 G+G+AA+QIG+ R+ I D + + + + +NP+I+ + + + EGCLS Sbjct: 55 GVGIAAIQIGIPKRMCAIYIPAVDEEGNIVKCDQWALVNPRIVASTVKVAYLKNGEGCLS 114 Query: 97 IP-DYRADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +P D V RSA +TV+ D Q I A G A CLQHELDH GIL+ DH ++ Sbjct: 115 VPEDQPGIVPRSAKVTVKGYDALTDQEVTIVARGFTAICLQHELDHFEGILYYDHFNK 172 >gi|145589658|ref|YP_001156255.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048064|gb|ABP34691.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 181 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 12/146 (8%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 DP L +++P++ + I LID++LE MY+ +G GLAA QIGV ++VV + Sbjct: 11 DPRLLEIAKPVDPKLISSQQIQTLIDDLLETMYAVNGAGLAAPQIGVNQQVVVFGFDQNP 70 Query: 67 ----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + + INP I SD EGCLS+P RA V R + +RY + Q Sbjct: 71 RYPDAEQVPETILINPIITPLSDISMEDWEGCLSVPGLRAKVPR--YTKIRYQGFDRYGQ 128 Query: 123 II--YADGLLATCLQHELDHLNGILF 146 I + A ++HE DHL G LF Sbjct: 129 SIDRTVEDFHARVVRHECDHLIGKLF 154 >gi|148546572|ref|YP_001266674.1| peptide deformylase [Pseudomonas putida F1] gi|148510630|gb|ABQ77490.1| peptide deformylase [Pseudomonas putida F1] Length = 178 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 8/168 (4%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 D L R++ P+ + ++++ LID+M E M G+GLAA QIG+ +LV+ + Sbjct: 10 DERLLRIAPPVPEHMFGSAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIFGFERSE 69 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + +NP I S + EGCLS+P R V R I + +D Sbjct: 70 RYPDAEAVPQTILLNPVITPTSSEIEDGWEGCLSVPGLRGVVPRFKHIGYQGIDPQGNPI 129 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +ADG A +QHE DHL G L+ + R T+ + +++ D Sbjct: 130 NRFADGFHARVVQHECDHLIGRLYPSRIQDFSRFGYTEVLFPGLEVSD 177 >gi|186476100|ref|YP_001857570.1| peptide deformylase [Burkholderia phymatum STM815] gi|184192559|gb|ACC70524.1| peptide deformylase [Burkholderia phymatum STM815] Length = 177 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R+++P++ ++ ++ L+ +M E M+ +G GLAA QIGV ++V+ + Sbjct: 10 DPRLLRIAKPVDHFDTPELHELVRDMFETMHDANGAGLAAPQIGVDLQVVIFGFGHNERY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP I S D EGCLS+P R V R + I D + Sbjct: 70 PDAPSVPETVLINPTITPVSLDTEEGWEGCLSVPGLRGAVSRLSMIRYHGFDQFGKPIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151 >gi|53719772|ref|YP_108758.1| peptide deformylase [Burkholderia pseudomallei K96243] gi|53723743|ref|YP_103199.1| peptide deformylase [Burkholderia mallei ATCC 23344] gi|76809016|ref|YP_333979.1| peptide deformylase [Burkholderia pseudomallei 1710b] gi|121601445|ref|YP_993377.1| peptide deformylase [Burkholderia mallei SAVP1] gi|126440852|ref|YP_001059473.1| peptide deformylase [Burkholderia pseudomallei 668] gi|126452569|ref|YP_001066757.1| peptide deformylase [Burkholderia pseudomallei 1106a] gi|134277462|ref|ZP_01764177.1| peptide deformylase [Burkholderia pseudomallei 305] gi|167004075|ref|ZP_02269849.1| peptide deformylase [Burkholderia mallei PRL-20] gi|167720172|ref|ZP_02403408.1| peptide deformylase [Burkholderia pseudomallei DM98] gi|167739177|ref|ZP_02411951.1| peptide deformylase [Burkholderia pseudomallei 14] gi|167816388|ref|ZP_02448068.1| peptide deformylase [Burkholderia pseudomallei 91] gi|167824767|ref|ZP_02456238.1| peptide deformylase [Burkholderia pseudomallei 9] gi|167846298|ref|ZP_02471806.1| peptide deformylase [Burkholderia pseudomallei B7210] gi|167894880|ref|ZP_02482282.1| peptide deformylase [Burkholderia pseudomallei 7894] gi|167903269|ref|ZP_02490474.1| peptide deformylase [Burkholderia pseudomallei NCTC 13177] gi|167911509|ref|ZP_02498600.1| peptide deformylase [Burkholderia pseudomallei 112] gi|167919519|ref|ZP_02506610.1| peptide deformylase [Burkholderia pseudomallei BCC215] gi|217421605|ref|ZP_03453109.1| peptide deformylase [Burkholderia pseudomallei 576] gi|237812813|ref|YP_002897264.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|238563756|ref|ZP_00438343.2| peptide deformylase [Burkholderia mallei GB8 horse 4] gi|242316254|ref|ZP_04815270.1| peptide deformylase [Burkholderia pseudomallei 1106b] gi|254178715|ref|ZP_04885370.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|254179317|ref|ZP_04885916.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|254189297|ref|ZP_04895808.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|254197856|ref|ZP_04904278.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|254200152|ref|ZP_04906518.1| peptide deformylase [Burkholderia mallei FMH] gi|254206490|ref|ZP_04912842.1| peptide deformylase [Burkholderia mallei JHU] gi|254258903|ref|ZP_04949957.1| peptide deformylase [Burkholderia pseudomallei 1710a] gi|254297203|ref|ZP_04964656.1| polypeptide deformylase [Burkholderia pseudomallei 406e] gi|52210186|emb|CAH36165.1| putative deformylase [Burkholderia pseudomallei K96243] gi|52427166|gb|AAU47759.1| polypeptide deformylase [Burkholderia mallei ATCC 23344] gi|76578469|gb|ABA47944.1| polypeptide deformylase [Burkholderia pseudomallei 1710b] gi|121230255|gb|ABM52773.1| polypeptide deformylase [Burkholderia mallei SAVP1] gi|126220345|gb|ABN83851.1| peptide deformylase [Burkholderia pseudomallei 668] gi|126226211|gb|ABN89751.1| peptide deformylase [Burkholderia pseudomallei 1106a] gi|134251112|gb|EBA51191.1| peptide deformylase [Burkholderia pseudomallei 305] gi|147749748|gb|EDK56822.1| peptide deformylase [Burkholderia mallei FMH] gi|147753933|gb|EDK60998.1| peptide deformylase [Burkholderia mallei JHU] gi|157806966|gb|EDO84136.1| polypeptide deformylase [Burkholderia pseudomallei 406e] gi|157936976|gb|EDO92646.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|160699754|gb|EDP89724.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|169654597|gb|EDS87290.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|184209857|gb|EDU06900.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|217395347|gb|EEC35365.1| peptide deformylase [Burkholderia pseudomallei 576] gi|237504956|gb|ACQ97274.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|238520038|gb|EEP83502.1| peptide deformylase [Burkholderia mallei GB8 horse 4] gi|242139493|gb|EES25895.1| peptide deformylase [Burkholderia pseudomallei 1106b] gi|243060514|gb|EES42700.1| peptide deformylase [Burkholderia mallei PRL-20] gi|254217592|gb|EET06976.1| peptide deformylase [Burkholderia pseudomallei 1710a] Length = 177 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68 DP L V+RP+E N+ ++ L+ +M E M+ +G GLAA QIGV ++++ + Sbjct: 10 DPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGSSERY 69 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V +NP I D EGCLS+P R V R + D Sbjct: 70 PEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQYGAKLER 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 IAEGFHARVVQHEYDHLIGKLY 151 >gi|163941714|ref|YP_001646598.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|229013180|ref|ZP_04170324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides DSM 2048] gi|229061641|ref|ZP_04198980.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH603] gi|229168715|ref|ZP_04296436.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH621] gi|163863911|gb|ABY44970.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|228614727|gb|EEK71831.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH621] gi|228717648|gb|EEL69304.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH603] gi|228748130|gb|EEL97991.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides DSM 2048] Length = 184 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 +PILR V+ + + + N + M+E V+ S D GIGLAA QIG+ + Sbjct: 12 NPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQIGISKK 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|260905538|ref|ZP_05913860.1| peptide deformylase [Brevibacterium linens BL2] Length = 221 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 12/156 (7%) Query: 5 PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DPILR+ +RP + ++++ L + M M + G+GLA Q+G+ + V + Sbjct: 27 PIVEAGDPILRQTTRPFDGQVDDAELAQLAEVMRATMLAAPGVGLAGPQVGIGLSMFVAE 86 Query: 63 -------LQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +++PM V +N + + + + EGCLSIP Y+A V R I + Sbjct: 87 DPGSLDPETAEVRQRSPMPLRVVLNAEYTPATSENVAFFEGCLSIPGYQAVVARPRSIEL 146 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 +D N G A + HE DHL+GI+++D Sbjct: 147 TGVDLNGTPIAEVVAGWSARIVAHETDHLDGIMYLD 182 >gi|229134783|ref|ZP_04263591.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST196] gi|228648636|gb|EEL04663.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST196] Length = 181 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 +PILR V+ + + + N + M+E V+ S D GIGLAA QIG+ + Sbjct: 9 NPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQIGISKK 68 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + Q EGCLS+ P Y V R IT Sbjct: 69 MIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGY---VPRYTRIT 125 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 126 VKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166 >gi|330971091|gb|EGH71157.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 179 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 75/152 (49%), Gaps = 12/152 (7%) Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65 L R++ P+ +S++ LI +M E M+S G+GLAA QIGV +LV+ + Sbjct: 13 LLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGVDLQLVIFGFERNERYP 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124 A + INP I S EGCLS+P R V R + ++RY + Q Q I Sbjct: 73 QAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPQGQPIE 130 Query: 125 -YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A +QHE DHL G L+ ++ + Sbjct: 131 RVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|154487371|ref|ZP_02028778.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis L2-32] gi|154083889|gb|EDN82934.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis L2-32] Length = 161 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR PI++I + +L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP ++ + EGCLS+P +R+ + VR +D + + Sbjct: 61 YNIDGKIG-----YVLNP-VLEETSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 ++ G++ LQHE DHL+G +++D L + +R Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEER 149 >gi|116335077|ref|YP_802572.1| peptide deformylase [Candidatus Carsonella ruddii PV] gi|116235358|dbj|BAF35206.1| peptide deformylase [Candidatus Carsonella ruddii PV] Length = 154 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 83/142 (58%), Gaps = 3/142 (2%) Query: 9 FPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 F D +R + ++ N +I+ +I M+ +MY +GIG+++ QI +++ D+ + Sbjct: 7 FKDKRIRLFFKNVKVSFNYNILYIIKQMIILMYKNNGIGISSNQINCFKNIIICDV--NF 64 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 +K P++ INPKI+ + + ++ EGCLSI ++ V R + ++Y + + + + Sbjct: 65 KKKKPLIMINPKILINNKNHTLGMEGCLSIKNFLISVLRFDKVYIKYFNIYNKKKKKIFN 124 Query: 128 GLLATCLQHELDHLNGILFIDH 149 G+ + C+QHE+DHLN L +D+ Sbjct: 125 GIKSRCIQHEIDHLNSKLILDY 146 >gi|117165081|emb|CAJ88634.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC 23877] Length = 214 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ ++ ++ + M + G+GLAA Q+GV R+ VI+ Sbjct: 25 PIVAAGDPVLRRPAEPFDGQLEPALLARFVEALRLTMRAAPGVGLAAPQVGVGLRIAVIE 84 Query: 63 ----LQDH---AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + D A + P F +NP + + EGCLS+P ++A V R A + + Sbjct: 85 DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGPGRAAFYEGCLSVPGWQAVVARHAEVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 D + + +G A +QHE DHL+G+L++D Sbjct: 145 VARDEHGRAVDEVFEGWPARIVQHETDHLDGVLYLDR 181 >gi|312131008|ref|YP_003998348.1| peptide deformylase [Leadbetterella byssophila DSM 17132] gi|311907554|gb|ADQ17995.1| peptide deformylase [Leadbetterella byssophila DSM 17132] Length = 218 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 3/104 (2%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRA 102 G+G+AA Q+GV + + D + P F INPKI S+ + EGCLSIPD R Sbjct: 85 GVGIAAPQVGVNRNAIWVQRFDKPGQ--PFEFYINPKITWKSELLQLGAEGCLSIPDTRD 142 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 +V RS I + Y N H +G A QHE+DHL GILF Sbjct: 143 NVVRSYAIQLSYSQLNGAHHTEVIEGFTAVIFQHEIDHLYGILF 186 >gi|319937459|ref|ZP_08011864.1| peptide deformylase [Coprobacillus sp. 29_1] gi|319807299|gb|EFW03908.1| peptide deformylase [Coprobacillus sp. 29_1] Length = 189 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 22/163 (13%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58 P++R +S+P+E I + L+ +M E + ++ +G+AAVQ+GVL R+ Sbjct: 13 PLIREISQPVEMPICQEDEQLLLDMHEFLVNSQDEEMSEKYHLRPAVGIAAVQVGVLKRM 72 Query: 59 VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSAFI 110 I D + + + +NPKI+++++ S + EGCLS+ D V R A + Sbjct: 73 CAIHVLSYDDDGNISKADDYALVNPKIVSYTEKGSYLKDGEGCLSVNDDVEGLVPRHAKV 132 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 TV+ D + I A G L+ CLQHELDH +G LF D +++ Sbjct: 133 TVKGYDVLTHKNVTIVARGYLSICLQHELDHFDGKLFYDRINK 175 >gi|28572612|ref|NP_789392.1| peptide deformylase [Tropheryma whipplei TW08/27] gi|39930875|sp|Q83HQ3|DEF_TROW8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28410744|emb|CAD67130.1| peptide deformylase [Tropheryma whipplei TW08/27] Length = 201 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I +L ++P+ S I ++ +M M++ G+GLA QIG+ R+ V Sbjct: 11 PIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYSYT 69 Query: 65 --DHAHRK---NPMVFIN---PKIITFSDDFSVY-------QEGCLSIPDYRADVKRSAF 109 D H+ NP + I PK T + +EGCLS P Y+ ++R+ Sbjct: 70 EGDTLHQGVAINPDLLIPKGVPKRQTHKQQANNSTSCDEPDREGCLSFPGYQFPLERAPQ 129 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T+ D N + ++A G LA QHE DHL G L++D L++ Sbjct: 130 VTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRLAQ 172 >gi|24372647|ref|NP_716689.1| polypeptide deformylase [Shewanella oneidensis MR-1] gi|32363157|sp|Q8EHZ2|DEF2_SHEON RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|24346687|gb|AAN54134.1|AE015550_9 polypeptide deformylase [Shewanella oneidensis MR-1] Length = 181 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 15/167 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL++ + + + + L M M G+G+AA Q+ L ++ Sbjct: 15 PIAVVGEAILKQQAIEVRDFDDTLSQLASQMAASMVEAKGVGIAAPQVHSPLALFIM--- 71 Query: 65 DHAHRKN----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 A R N P+V +NP+I+ S +EGCLS+P R + R I VRY Sbjct: 72 --ASRPNERYPDAPLMEPLVVVNPQIVLRSLQLEKGEEGCLSVPGQRFTIWRPQTIVVRY 129 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + Q Q G +A QHE DHL GI ++ ++ ++ ++ Sbjct: 130 QNLAGQWQHSELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMAQE 176 >gi|124386084|ref|YP_001029186.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|126448140|ref|YP_001080884.1| peptide deformylase [Burkholderia mallei NCTC 10247] gi|254358101|ref|ZP_04974374.1| peptide deformylase [Burkholderia mallei 2002721280] gi|124294104|gb|ABN03373.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|126241010|gb|ABO04103.1| peptide deformylase [Burkholderia mallei NCTC 10247] gi|148027228|gb|EDK85249.1| peptide deformylase [Burkholderia mallei 2002721280] Length = 177 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68 DP L V+RP+E N+ ++ L+ +M E M+ +G GLAA QIGV ++++ + Sbjct: 10 DPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGSSERY 69 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V +NP I D EGCLS+P R V R + D Sbjct: 70 PEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSLPGLRGVVSRYRRVRYSGFDQYGAKLER 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 IAEGFHARVVQHEYDHLIGKLY 151 >gi|271964329|ref|YP_003338525.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270507504|gb|ACZ85782.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 182 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR + P++ + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAIQSIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMMDAPGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + INP + + +EGCLS P R+ + ++ + + Sbjct: 61 YYVDEQLGH-----LINPNLDLSEEKDEEGEEGCLSFPGLSFPTPRAIRAVAKGLNMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + L+A C QHE DHL+G+LFID + +R + K++ + Sbjct: 116 PVTLEGTDLMARCFQHETDHLDGVLFIDRMDLKQRKLAMKEIRE 159 >gi|77460570|ref|YP_350077.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] gi|77384573|gb|ABA76086.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] Length = 179 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 8/150 (5%) Query: 20 PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN------P 72 P E ++S ++ LID+M + M S G+GLAA QIGV +LV+ + H+ R Sbjct: 21 PAEMLDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFE-HSERYPDAEAVPQ 79 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + INP I S EGCLS+P R V R I +D + + A G A Sbjct: 80 TILINPLITPLSPLMEEGFEGCLSVPGLRGAVDRYQQIRYEGVDPKGEPIVRVASGFHAR 139 Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +QHE DHL G L+ ++ + T+ M Sbjct: 140 VVQHECDHLIGRLYPSRITDFSKFGFTEVM 169 >gi|229592219|ref|YP_002874338.1| peptide deformylase [Pseudomonas fluorescens SBW25] gi|229364085|emb|CAY51686.1| peptide deformylase [Pseudomonas fluorescens SBW25] Length = 179 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 12/152 (7%) Query: 14 LRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 L R++ P+ E +S ++ LID+M + M G+GLAA QIGV +LV+ + A + Sbjct: 13 LLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIFGFE--ASER 70 Query: 71 NP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P + INP I EGCLS+P R V R I D + + Sbjct: 71 YPDAPPVPQTILINPLITPLGPVLEEGYEGCLSVPGMRGAVSRYQQIRYEGFDPKGEPIV 130 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +ADG A +QHE DHL G L+ ++ + Sbjct: 131 RFADGFHARLVQHECDHLIGRLYPSRITDFSK 162 >gi|296269346|ref|YP_003651978.1| peptide deformylase [Thermobispora bispora DSM 43833] gi|296092133|gb|ADG88085.1| peptide deformylase [Thermobispora bispora DSM 43833] Length = 182 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR + P+ + ++ L+ ++ + M +G GLAA QIGV R+ Sbjct: 1 MAIRQIRLFGDPVLRTPAEPVVDFDKELRKLVKDLTDTMLDANGAGLAAPQIGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + + +EGCLS P R+ + + + Sbjct: 61 YNVDGQLGH-----LVNPNLDLSDEMDEEGEEGCLSFPGLSYPTPRAIRAVAKGFNMYGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I L+A CLQHE DHL+GILFID ++ R + K + + Sbjct: 116 PVTIEGTELMARCLQHETDHLDGILFIDRMNPEHRRLAMKAIRE 159 >gi|167837046|ref|ZP_02463929.1| peptide deformylase [Burkholderia thailandensis MSMB43] Length = 176 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA-H 68 DP L V+RP+E N+ ++ L+ +M E M+ +G GLAA QIGV ++++ + + Sbjct: 10 DPRLLEVARPVETFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGNSERY 69 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V +NP + D EGCLS+P R V R + D Sbjct: 70 PEAPPVPETVLVNPGVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQYGAKLER 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 IAEGFHARVVQHEYDHLIGKLY 151 >gi|109899738|ref|YP_662993.1| peptide deformylase [Pseudoalteromonas atlantica T6c] gi|109702019|gb|ABG41939.1| peptide deformylase [Pseudoalteromonas atlantica T6c] Length = 188 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 9/160 (5%) Query: 13 ILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 ILR ++ + + + +D +L M +G+G+AA Q+ +++I + Sbjct: 11 ILRTPAKSVSQTDIETGAFQEFVDALLATMQEANGVGIAAPQVFDERAVMIIASRPSPRY 70 Query: 70 KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 N P+V INPK+I S++ EGCLS+P R ++R+ ++ + Y+ + Sbjct: 71 PNAPDMEPLVLINPKVIQSSEETVKDWEGCLSVPGLRGFIRRATWVEIEYLQRDGTPATQ 130 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 DG +A HE DHL G ++DH+ L D++ + + + Sbjct: 131 RLDGFVARIFLHEFDHLIGKTWLDHVE-LNTDIMAESVWR 169 >gi|227834098|ref|YP_002835805.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] gi|227455114|gb|ACP33867.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] Length = 210 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 18/173 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P+VI DP+L + P+ E I+S ++ LI +M E M + G+GLAA QIGV RL Sbjct: 7 MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 66 Query: 59 VV-----------IDLQDHAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 V +L + R+ NP++ + T D EGCLS+P Sbjct: 67 FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 126 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKR 155 R+ + V + + I G A LQHE HL+G ++ D L+ R KR Sbjct: 127 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKR 179 >gi|224282525|ref|ZP_03645847.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171] gi|310286987|ref|YP_003938245.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|313139678|ref|ZP_07801871.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171] gi|309250923|gb|ADO52671.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|313132188|gb|EFR49805.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171] Length = 217 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 5 PLVIFPDPILRRVS-RPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ + + +++ +N LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQQTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P INP D + EGCLS Y+A +R IT R+ Sbjct: 90 DHVRDDEDDPREIAEFPFHAIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDITARW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D N + G A QHE DHL+G L+ID Sbjct: 150 TDENGKQHEERLHGWPARIFQHETDHLSGELYID 183 >gi|262183416|ref|ZP_06042837.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975] Length = 204 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 18/173 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P+VI DP+L + P+ E I+S ++ LI +M E M + G+GLAA QIGV RL Sbjct: 1 MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 60 Query: 59 VV-----------IDLQDHAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 V +L + R+ NP++ + T D EGCLS+P Sbjct: 61 FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKR 155 R+ + V + + I G A LQHE HL+G ++ D L+ R KR Sbjct: 121 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKR 173 >gi|302187708|ref|ZP_07264381.1| peptide deformylase [Pseudomonas syringae pv. syringae 642] gi|330896888|gb|EGH28478.1| peptide deformylase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330942465|gb|EGH45062.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B] gi|330977866|gb|EGH77769.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 179 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 12/152 (7%) Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65 L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +LV+ + Sbjct: 13 LLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERNERYP 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124 A + INP I S EGCLS+P R V R + ++RY + Q Q I Sbjct: 73 QAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPQGQPIE 130 Query: 125 -YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A +QHE DHL G L+ ++ + Sbjct: 131 RVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|56964188|ref|YP_175919.1| peptide deformylase [Bacillus clausii KSM-K16] gi|81678844|sp|Q5WFA2|DEF_BACSK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56910431|dbj|BAD64958.1| peptide deformylase [Bacillus clausii KSM-K16] Length = 183 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 18/161 (11%) Query: 11 DPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLY 56 +PILR+V+ P+E + D L+D MLE + ++ G+GLAA QIG+ Sbjct: 12 NPILRKVAEPVELPLTDEDKQTLVD-MLEFIKNSQDPEIAEKYGLRPGVGLAAPQIGISK 70 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVR 113 RL I D M NPK+++ S + + + EGCLS+ D V R A +T+ Sbjct: 71 RLFAIHATDENGNLYSMGIANPKVVSHSVETNELENGEGCLSVDRDVPGLVPRRARLTIT 130 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +D + G +A QHELDHL+GI+F D + L+ Sbjct: 131 GVDHEGNDVRMRLRGYIAIVFQHELDHLDGIMFYDRIEGLE 171 >gi|108885085|ref|NP_072768.2| peptide deformylase [Mycoplasma genitalium G37] gi|255660128|ref|ZP_05405537.1| peptide deformylase [Mycoplasma genitalium G37] gi|84626150|gb|AAC71324.2| peptide deformylase [Mycoplasma genitalium G37] gi|166078861|gb|ABY79479.1| peptide deformylase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 193 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 22/169 (13%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS---------------TDGIGLA 48 K ++F D L +++P E +N I I+ ++ M + GIG+A Sbjct: 7 KTWLVFDDNAL--INKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIA 64 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIG +L I L D +++ + INPKII S++ F EGCLS+ ++ V Sbjct: 65 ANQIGYWKQLFYIHLND-LNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVI 123 Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRL 153 RS +IT++ D + +I I A GL CLQHE DHL G F ++ L Sbjct: 124 RSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 172 >gi|28493277|ref|NP_787438.1| formylmethionine deformylase [Tropheryma whipplei str. Twist] gi|39930873|sp|Q83GH8|DEF_TROWT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28476318|gb|AAO44407.1| formylmethionine deformylase [Tropheryma whipplei str. Twist] Length = 228 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 26/168 (15%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I +L ++P+ S I ++ +M M++ G+GLA QIG+ R+ V Sbjct: 38 PIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYSYT 96 Query: 65 --DHAHRKNPMVFINPKII------------------TFSDDFSVYQEGCLSIPDYRADV 104 D H+ V INP ++ T D+ +EGCLS P Y+ + Sbjct: 97 EGDTLHQG---VAINPDLLIPKGVPKRQTNKQQANNSTSCDEPD--REGCLSFPGYQFPL 151 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +R+ +T+ D N + ++A G LA QHE DHL G L++D L++ Sbjct: 152 ERAPQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRLAQ 199 >gi|66047008|ref|YP_236849.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a] gi|63257715|gb|AAY38811.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae B728a] Length = 179 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 12/152 (7%) Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65 L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +LV+ + Sbjct: 13 LLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERNERYP 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124 A + INP I S EGCLS+P R V R + ++RY + Q Q I Sbjct: 73 EAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPQGQPIE 130 Query: 125 -YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A +QHE DHL G L+ ++ + Sbjct: 131 RVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|298252788|ref|ZP_06976582.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] gi|297533152|gb|EFH72036.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] Length = 162 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 9/165 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR I +I + +L+D++LE + GL+A QIGV +R Sbjct: 1 MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP I + EGCLS+P +R+ + +D + + Sbjct: 61 YNINGRIG-----YILNPVIEELKGE-QYDDEGCLSVPGLWYKTRRANYARACGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++ +GL+A +QHE DHL+G +++D RL++D+ + + +L Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLD---RLEKDVRRQALREL 156 >gi|152976388|ref|YP_001375905.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025140|gb|ABS22910.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98] Length = 208 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +PILR V+ ++ + + + M+E + ++ GIGLAA QIG+ R Sbjct: 36 NPILRTVAEEVQLPASEEDTQTLKEMIEFVINSQNPEMVEKYNLRPGIGLAAPQIGISKR 95 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI----PDYRADVKRSAFIT 111 ++ I + D NPKII+ S + + EGCLS+ P Y V R A IT Sbjct: 96 MIAIHVTDTNETLYSYALFNPKIISHSVERTYLPAGEGCLSVDREVPGY---VPRYARIT 152 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ + + + GL A QHE+DHLNG++F DH+++ Sbjct: 153 VKATTVDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINQ 193 >gi|153938041|ref|YP_001390224.1| putative peptide deformylase [Clostridium botulinum F str. Langeland] gi|152933937|gb|ABS39435.1| putative peptide deformylase [Clostridium botulinum F str. Langeland] gi|295318318|gb|ADF98695.1| putative peptide deformylase [Clostridium botulinum F str. 230613] Length = 166 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M KP+++ D IL R+S+ I+K N D ++N + + + + G G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISKKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D H FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKTH-----YFINPILEFIGEDTFYIWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + N + +Y +G L+ QHE DHL+GIL + LK I K S Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRARDLKSFRINKNKS 164 >gi|326402613|ref|YP_004282694.1| peptide deformylase [Acidiphilium multivorum AIU301] gi|325049474|dbj|BAJ79812.1| peptide deformylase [Acidiphilium multivorum AIU301] Length = 184 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 8/147 (5%) Query: 12 PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD----- 65 P+L + P+ + +I L+ +M E + G+GLAA Q+ V RL + + + Sbjct: 12 PVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLFIYRVPESRAGG 71 Query: 66 --HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 H + INP+++ + EGCLSIP A V R+A +T+R MD Sbjct: 72 GEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTLRAMDATGAPFS 131 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150 A G A +QHE DHL+GIL+ L Sbjct: 132 REAAGFHARVIQHEADHLDGILYPQRL 158 >gi|2507258|sp|P47352|DEF_MYCGE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase Length = 216 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 22/169 (13%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS---------------TDGIGLA 48 K ++F D L +++P E +N I I+ ++ M + GIG+A Sbjct: 30 KTWLVFDDNAL--INKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIA 87 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIG +L I L D +++ + INPKII S++ F EGCLS+ ++ V Sbjct: 88 ANQIGYWKQLFYIHLND-LNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVI 146 Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRL 153 RS +IT++ D + +I I A GL CLQHE DHL G F ++ L Sbjct: 147 RSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 195 >gi|306822699|ref|ZP_07456077.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|309800930|ref|ZP_07695062.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] gi|304554244|gb|EFM42153.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|308222466|gb|EFO78746.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] Length = 161 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 6/162 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR PI++I + +L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP ++ + EGCLS+P +R+ + VR +D + Sbjct: 61 YNIDGKIG-----YVLNP-VLEETSGEQYGDEGCLSVPGLWYKTRRADYAQVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 ++ G++ LQHE DHL+G +++D L + +R + M Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYM 156 >gi|229162908|ref|ZP_04290865.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus R309803] gi|228620790|gb|EEK77659.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus R309803] Length = 181 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 22/161 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 +PILR V+ + + + N + M+E V+ S D GIGLAA QIG+ + Sbjct: 9 NPILRNVAEEVSIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 68 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + EGCLS+ P Y V R IT Sbjct: 69 MIAVHVTDTNGTLYSHALFNPKIISHSVERTYLPNGEGCLSVDRDVPGY---VPRYTRIT 125 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 126 VKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166 >gi|226361306|ref|YP_002779084.1| peptide deformylase [Rhodococcus opacus B4] gi|254767598|sp|C1B0D9|DEF_RHOOB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|226239791|dbj|BAH50139.1| peptide deformylase [Rhodococcus opacus B4] Length = 196 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 9/155 (5%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I DP+L + + + +++ LI +M + M + +G+GLAA Q+G+ RL V D Sbjct: 5 PIRIVGDPVLHEPTETVSESPAELSELIADMYDTMDAANGVGLAANQVGIPLRLFVYDCP 64 Query: 65 DHAHRKNPM----VFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115 D P +NP + T ++ EGCLS+P + R+ + V Sbjct: 65 DVDETGKPFRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGRAEWAKVTGT 124 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D + I A LQHE+ HL+G L++D L Sbjct: 125 DADGNAVEIEGRDFFARMLQHEVGHLDGFLYVDML 159 >gi|311742536|ref|ZP_07716345.1| peptide deformylase [Aeromicrobium marinum DSM 15272] gi|311314164|gb|EFQ84072.1| peptide deformylase [Aeromicrobium marinum DSM 15272] Length = 203 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+ + P++ R + + D+ L+ +M+ MY+ +G+GLAA Q+GV ++ V D Sbjct: 16 RPITRWGTPVMHRELADVTTFDEDLRVLVRDMVATMYAANGVGLAANQVGVDLKVFVFDC 75 Query: 64 QDHAHRKNPMVFINPKIITFS----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + V NP ++T EGCLS+P R V D + Sbjct: 76 PDEDSERVTGVVCNP-VLTLPALGDRRLDDDDEGCLSLPGAFTTCARPDAAHVSGFDEHG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GLLA CLQHE DHL G +F D + R + K ++ + Sbjct: 135 EPVEFTGSGLLARCLQHETDHLFGTVFGDRVPERSRKKLYKTHREVAE 182 >gi|159040197|ref|YP_001539450.1| formylmethionine deformylase [Salinispora arenicola CNS-205] gi|157919032|gb|ABW00460.1| formylmethionine deformylase [Salinispora arenicola CNS-205] Length = 187 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 6/147 (4%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHAH 68 P +L R ++ + + L +++ M + G +GLAA QIGV R+ +D+ HA Sbjct: 30 PATVLSRAGGDVDPTAEETVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAVDVTGHAK 89 Query: 69 RK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR-YMDCNAQHQII 124 V N ++ S + V +EGC+S+PD DVKR+ + V + + + Sbjct: 90 AAIVHGAFVLCNAVVVAASR-WKVGREGCMSVPDLTGDVKRAGQLVVEGELPATGKAVRL 148 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 + A LQHE+DH G+LF+D ++ Sbjct: 149 VTNAFEARALQHEIDHCAGLLFLDRVA 175 >gi|330949875|gb|EGH50135.1| peptide deformylase [Pseudomonas syringae Cit 7] Length = 179 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 12/152 (7%) Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65 L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +LV+ + Sbjct: 13 LLRIAPPVPADMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERNERYP 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124 A + INP I S EGCLS+P R V R + ++RY + Q Q I Sbjct: 73 QAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPQGQPIV 130 Query: 125 -YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A +QHE DHL G L+ ++ + Sbjct: 131 RVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|83719851|ref|YP_442547.1| peptide deformylase [Burkholderia thailandensis E264] gi|167581474|ref|ZP_02374348.1| peptide deformylase [Burkholderia thailandensis TXDOH] gi|167619583|ref|ZP_02388214.1| peptide deformylase [Burkholderia thailandensis Bt4] gi|257138756|ref|ZP_05587018.1| peptide deformylase [Burkholderia thailandensis E264] gi|83653676|gb|ABC37739.1| polypeptide deformylase [Burkholderia thailandensis E264] Length = 177 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68 DP L V+RP+E N+ ++ L+ +M E M+ +G GLAA QIGV ++++ + Sbjct: 10 DPRLLEVARPVESFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGSSERY 69 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V +NP + D EGCLS+P R V R + D Sbjct: 70 PEAPPVPETVLVNPSVEYLPPDMEDGWEGCLSVPGLRGVVSRYRRVRYSGFDQYGAKLER 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 IAEGFHARVVQHEYDHLIGKLY 151 >gi|294660577|ref|NP_853423.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)] gi|298286800|sp|Q7NAK8|DEF_MYCGA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|284812240|gb|AAP56991.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)] gi|284930920|gb|ADC30859.1| peptide deformylase [Mycoplasma gallisepticum str. R(high)] Length = 196 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 16/165 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53 LV +P +R V ++ ++ +++++ID ML + + GIG+AA Q+G Sbjct: 12 LVTDDNPKMREVCTEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIP-DYRADVKRSAFI 110 + R + D +++ + INP+ I + + + EGCLS+P D V RS + Sbjct: 72 LNQRFFYVHFTDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ D Q + I A GLLA CLQHE+DHL G + D ++ +K Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176 >gi|296167940|ref|ZP_06850084.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896930|gb|EFG76556.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 197 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++P+ + +D+ LI +M + M + G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTQPVPVGADGSLPADLAALIADMYDTMDAAHGVGLAANQIGVG 60 Query: 56 YRLVVIDLQDHAHRKNPM--VFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D R + V +NP +I D EGCLS+P R+ Sbjct: 61 LRVFVYDCADDRGRTDRRRGVVVNPVLETSQIPETMPDPDNDDEGCLSVPGESFPTGRAT 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + + I GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGKPVEIEGSGLFARMLQHETGHLDGFLYLDRL 162 >gi|318057272|ref|ZP_07975995.1| peptide deformylase [Streptomyces sp. SA3_actG] gi|318076700|ref|ZP_07984032.1| peptide deformylase [Streptomyces sp. SA3_actF] Length = 214 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 18/171 (10%) Query: 5 PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + P E + + L+ M M G+GLAA QIGV RL V Sbjct: 25 PIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAV-- 82 Query: 63 LQDHA---------HRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 L+D A + P+ V +NP + + + EGCLS+P ++A V R A + Sbjct: 83 LEDPATVPEEVRRVRERAPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVV 142 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 +R D + + G A +QHE DHL+G L++D L R + + + Sbjct: 143 RLRAEDEHGRALDEEVRGWSARIVQHETDHLDGTLYVDRA--LPRSLTSNE 191 >gi|33862657|ref|NP_894217.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313] gi|39931000|sp|Q7V8G6|DEF1_PROMM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|33634573|emb|CAE20559.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT 9313] Length = 192 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 16/183 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K ++ +P LR+VS ++ + + I++LI ++ + + + G GLAA QIGV R+V Sbjct: 1 MAVKEILRMGNPQLRKVSNVVDDASDELIISLIKDLQDTVKAHQGAGLAAPQIGVPLRVV 60 Query: 60 VIDLQDHAHR--KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + R + P + INP + D EGCLS+P R V R + I R Sbjct: 61 LFGGGGPNPRYPEAPSIPQTLLINPVLTPIGSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL---------SRLKRDMITKKMSK 164 ++ + +G A +QHE DHL+G+LF D L L+ I +K+S Sbjct: 121 ALNEDGFEVEHCLEGFPARVIQHECDHLDGVLFPDRLVDSASFGFTGELETAGIIEKLSS 180 Query: 165 LVQ 167 Q Sbjct: 181 AEQ 183 >gi|313497652|gb|ADR59018.1| Def_2 [Pseudomonas putida BIRD-1] Length = 178 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 8/168 (4%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 D L R++ P+ + ++++ LID+M E M G+GLAA Q+G+ +LV+ + Sbjct: 10 DERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIFGFERSE 69 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + +NP I S + EGCLS+P R V R I + +D Sbjct: 70 RYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQGIDPQGSPI 129 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +ADG A +QHE DHL G L+ + R T+ + ++ D Sbjct: 130 NRFADGFHARVVQHECDHLIGRLYPSRIQDFARFGYTEVLFPGLEASD 177 >gi|268611639|ref|ZP_06145366.1| peptide deformylase [Ruminococcus flavefaciens FD-1] Length = 153 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L +V +P++K + + L+D+M E + G+GLAA QIG+ R+ + Sbjct: 1 MALRKILTDKDESLHKVCKPVDKFDEKLAVLLDDMHETLDKAQGLGLAAPQIGLCRRIFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + L++ INP+ +T + QEGCLS P+ V R ++ D N Sbjct: 61 MHLEE-----GSFECINPE-VTQKEGKQRVQEGCLSCPNVWGYVTRPMKCHLKAQDRNGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 +GL A C HE DHL+G +F + Sbjct: 115 WFERDFEGLGAQCTCHENDHLDGHVFTE 142 >gi|170723021|ref|YP_001750709.1| peptide deformylase [Pseudomonas putida W619] gi|169761024|gb|ACA74340.1| peptide deformylase [Pseudomonas putida W619] Length = 178 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 D L RV+ P+ + ++++ LID+M E M G+GLAA Q+G+ +LV+ + Sbjct: 10 DERLLRVAAPVPEHLIGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIFGFERSE 69 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + +NP I S + EGCLS+P R V R I+ +D Sbjct: 70 RYPDAEAVPQTILLNPVITPLSTEIEEGWEGCLSVPGLRGVVPRYKHISYEGIDPQGNPV 129 Query: 123 IIYADGLLATCLQHELDHLNGILF 146 ADG A +QHE DHL G L+ Sbjct: 130 NRVADGFHARVVQHECDHLIGRLY 153 >gi|1361510|pir||G64211 formylmethionine deformylase homolog - Mycoplasma genitalium Length = 226 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 22/169 (13%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS---------------TDGIGLA 48 K ++F D L +++P E +N I I+ ++ M + GIG+A Sbjct: 40 KTWLVFDDNAL--INKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIA 97 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIG +L I L D +++ + INPKII S++ F EGCLS+ ++ V Sbjct: 98 ANQIGYWKQLFYIHLND-LNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVI 156 Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRL 153 RS +IT++ D + +I I A GL CLQHE DHL G F ++ L Sbjct: 157 RSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 205 >gi|172041401|ref|YP_001801115.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109] gi|171852705|emb|CAQ05681.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109] Length = 267 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 78/176 (44%), Gaps = 31/176 (17%) Query: 5 PLVIFPDPIL----RRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 P+VI DP+L +V P N + I +M E M G+GLA Q+GV Sbjct: 49 PIVIAGDPVLHNPTNKVGEPDLDANGVPTEEFKKFIADMHETMDRAHGVGLAGNQVGVAK 108 Query: 57 RLVV-----IDLQDHAHR--------KNPM---VFINPKIIT------FSDDFSVYQEGC 94 RL V ID + R PM INP + T D++ +EGC Sbjct: 109 RLFVYHCPDIDGPNGEQRTEEEIAAQGGPMRRGTVINPVLETSEIPETMPDEYED-EEGC 167 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 LS+P Y R+ + V +D N + + G A CLQHE+ HL+G L+ D L Sbjct: 168 LSVPGYSFPTGRADWARVTGIDENGEPVTVEGYGFFARCLQHEVGHLDGFLYTDTL 223 >gi|224283170|ref|ZP_03646492.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171] gi|311064448|ref|YP_003971173.1| peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313140319|ref|ZP_07802512.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171] gi|310866767|gb|ADP36136.1| Def Peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313132829|gb|EFR50446.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171] Length = 162 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + PDP+LR I +I + L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRTVPDPVLRTPCETIREITPSVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + S + EGCLS+P +R+ + VR +D + Sbjct: 61 YNINGKIG-----YVLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ GL+ LQHE DHL+G +++D L + +R + M + Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMRE 158 >gi|237757000|ref|ZP_04585457.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] gi|237690843|gb|EEP59994.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] Length = 121 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 AA Q+ R +++D H+ N MV NPKI+ + +++EGC+S+PDY Sbjct: 1 AAPQVNNPIRAIIVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEI-IFREGCMSVPDYTG 59 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +VKR +I V D N +G A +QHE+DHL G +FI+ + K D+ +K+ Sbjct: 60 NVKRFYYIKVEAQDINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKV 118 Query: 163 SK 164 K Sbjct: 119 YK 120 >gi|56475469|ref|YP_157058.1| peptide deformylase [Aromatoleum aromaticum EbN1] gi|56311512|emb|CAI06157.1| N-formylmethionyl-tRNA deformylase 2 [Aromatoleum aromaticum EbN1] Length = 175 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + L+ DP L + + P++ + ++ L+ ++ + M + G+GLAA QIGV ++V Sbjct: 1 MTIRTLLRMGDPRLLQPAEPVDAFGTVELAALVVDLFDTMAAHGGVGLAAPQIGVGLQMV 60 Query: 60 VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + + V +NP I + EGCLS+P R V R + I RY Sbjct: 61 IFGFERSERYPDAPPVPQTVLLNPVITPLGELVEEGWEGCLSVPGLRGMVPRHSRI--RY 118 Query: 115 MDCNAQHQII--YADGLLATCLQHELDHLNGILF 146 ++Q Q I A+G A +QHE DHL G+L+ Sbjct: 119 QGADSQGQTIDRIAEGFHARVVQHECDHLAGVLY 152 >gi|37626213|gb|AAQ96588.1| hypothetical protein [Vibrio phage VP16C] Length = 137 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 D+ L+D M M + GIGLA Q+GVL R++V+ K +NP I + Sbjct: 21 GEDVTGLVDAMTAAMTAAGGIGLAGNQLGVLKRVIVVRAP-----KFKGCIVNPVITRHT 75 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 +EGCLS P D KR ITV D + Q + A GL A C+QHE+DHLNG+ Sbjct: 76 SGHVNSREGCLSFPGKTVDKKRHNKITVEGFDAHWQPIKVEAKGLTAFCIQHEIDHLNGV 135 >gi|24645726|ref|NP_731494.1| CG31278 [Drosophila melanogaster] gi|23170931|gb|AAF54540.2| CG31278 [Drosophila melanogaster] gi|54650588|gb|AAV36873.1| RE57173p [Drosophila melanogaster] gi|220952214|gb|ACL88650.1| CG31278-PA [synthetic construct] Length = 238 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 17/159 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR+ + P E + S +I +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 56 DPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRI 115 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ P +FINP + + + EGC+S+ Y A+V+R + + Sbjct: 116 RKELPEAVYQARQMSELPLTIFINPVLTVTNYAKLKHPEGCMSVRGYSAEVERFEGVKLT 175 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + G A QHE+DHL G L+ DH+ R Sbjct: 176 GLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|330957627|gb|EGH57887.1| peptide deformylase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 179 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 10/144 (6%) Query: 20 PIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----DHAHRKNPM 73 P E S +N LI +M E M+S G+GLAA QIGV +LV+ + A Sbjct: 21 PTEMFGSSELNTLIADMFETMHSVSGVGLAAPQIGVDLQLVIFGFERNERYPQAEAVPQT 80 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY--ADGLLA 131 + +NP I S + EGCLS+P R V R + ++RY + + + I A G A Sbjct: 81 ILLNPVITPLSPELEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPEGKPIERIAHGFHA 138 Query: 132 TCLQHELDHLNGILFIDHLSRLKR 155 +QHE DHL G L+ ++ + Sbjct: 139 RVVQHECDHLIGRLYPSRITDFSK 162 >gi|303281244|ref|XP_003059914.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458569|gb|EEH55866.1| predicted protein [Micromonas pusilla CCMP1545] Length = 185 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 18/156 (11%) Query: 12 PILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 P LR ++ P+ I++ LI ML + G+GLAA QIGV YR+ V++ + Sbjct: 8 PCLREIAEEVPLSSIDTAKTQELIQEMLSICRGR-GVGLAAPQIGVPYRIFVLEDTEEGM 66 Query: 67 ---------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 A + P V INP + S+ + + EGCLS+ YR V+R + V Sbjct: 67 SDVSKKDLEAMDRKPFAAKVVINPVVTPVSNLSAAFFEGCLSVQGYRGLVRRYLEVRVTG 126 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G A +QHE+DHLNG+L++D + Sbjct: 127 YGGDGSPVDFVARGWQARIVQHEMDHLNGVLYVDRM 162 >gi|322805193|emb|CBZ02757.1| peptide deformylase related protein [Clostridium botulinum H04402 065] Length = 166 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 11/169 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M KP+++ D IL R+S I+K N D ++N + + + + G G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D H FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKTH-----YFINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + + +Y +G L+ QHE DHL+GIL + LK I K S Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164 >gi|89099513|ref|ZP_01172388.1| peptide deformylase [Bacillus sp. NRRL B-14911] gi|89085666|gb|EAR64792.1| peptide deformylase [Bacillus sp. NRRL B-14911] Length = 184 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 3/112 (2%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-Y 100 GIGLAA QI L R++ + + D + NPKI++ S + F EGCLS+ + + Sbjct: 58 GIGLAAPQIDCLKRMIAVHVTDTDGKLYSFALFNPKIVSHSVEKAFLTSGEGCLSVDEPF 117 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A IT++ D + + + GL A QHE+DHLNG++F DH+++ Sbjct: 118 PGFVPRYARITLKAFDIDGREVKLRLRGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|116670740|ref|YP_831673.1| peptide deformylase [Arthrobacter sp. FB24] gi|116610849|gb|ABK03573.1| Peptide deformylase [Arthrobacter sp. FB24] Length = 226 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 12/149 (8%) Query: 12 PILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV------IDL 63 P+LR+ + P E +++ LI M EVM+ G+GLAA Q+G+ +L V +D Sbjct: 37 PVLRQQAAPYEGQLDGTELAALIALMREVMHDAPGVGLAAPQLGIPLQLAVLEDQYDVDA 96 Query: 64 QDHAHR-KNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A R ++P+ F INP + + EGCLS+ +A V R + + + D Sbjct: 97 ETAAVRHRSPLEFFAVINPSYSPLGTGTAAFYEGCLSLQGLQAVVSRHETVRLDFTDPGG 156 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + G A +QHE DHL GIL++D Sbjct: 157 TRRQQDFFGWQARIVQHEADHLQGILYVD 185 >gi|168178266|ref|ZP_02612930.1| putative peptide deformylase [Clostridium botulinum NCTC 2916] gi|182670881|gb|EDT82855.1| putative peptide deformylase [Clostridium botulinum NCTC 2916] Length = 166 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 15/171 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M KP+++ D IL R+S I+K N D ++N + + + + G G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEKIQKSNLDKAEQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITV 112 R++ + L D H FINP I+ F D F ++ + C+S P V+R V Sbjct: 61 SVRIIYMHLGDKTH-----YFINP-ILEFIGEDTFHLWDD-CMSFPGLEVYVERHKKCKV 113 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Y + N + +Y +G L+ QHE DHL+GIL + LK I K S Sbjct: 114 TYKNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164 >gi|297720233|ref|NP_001172478.1| Os01g0636600 [Oryza sativa Japonica Group] gi|255673494|dbj|BAH91208.1| Os01g0636600 [Oryza sativa Japonica Group] Length = 198 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 58/99 (58%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 84 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 143 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +V +NP + S VY+E CLS P A+V Sbjct: 144 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANV 182 >gi|194902258|ref|XP_001980657.1| GG17276 [Drosophila erecta] gi|190652360|gb|EDV49615.1| GG17276 [Drosophila erecta] Length = 238 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 17/159 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DPILR+ + P E ++S +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 56 DPILRQQAALVPKEHLDSPEIKAIVERMVKVLRKFECVGIAAPQIGVSLRIIAMEFKGRV 115 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ P V INP + + + EGC+S+ Y A+V+R + + Sbjct: 116 RKELPEVVYQARQMSELPLTVLINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGVKLT 175 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + G A QHE+DHL G L+ DH+ R Sbjct: 176 GLDQQGIQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|310827878|ref|YP_003960235.1| peptide deformylase [Eubacterium limosum KIST612] gi|308739612|gb|ADO37272.1| peptide deformylase [Eubacterium limosum KIST612] Length = 148 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 11/151 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLV 59 M K PL DP+L++ + ++ ++ I +L++ M+ + T G LAA Q+G+L +LV Sbjct: 1 MPKLPLHYNDDPVLKQKCQSVQVVDDSIRSLLNAMMNTLQLTPGAAALAANQVGILLQLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID + H K +NP+I+ ++ E CLS P R + VR +D N Sbjct: 61 VIDYAGY-HLK----LVNPEILD-TEGSRECMESCLSFPGRHIMTLRPRAVRVRALDENG 114 Query: 120 QHQIIYAD--GLLATCLQHELDHLNGILFID 148 +IY D G +A CL HE+DHL GI+FI+ Sbjct: 115 V--VIYLDVSGEMAKCLCHEIDHLRGIVFIE 143 >gi|104782988|ref|YP_609486.1| peptide deformylase [Pseudomonas entomophila L48] gi|95111975|emb|CAK16702.1| peptide deformylase 2 [Pseudomonas entomophila L48] Length = 178 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 8/141 (5%) Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 L R++ P+ + ++++ LID+M E M G+GLAA QIG+ +LV+ + Sbjct: 13 LLRIAPPVPEHMLGSAELRQLIDDMFETMAHVGGVGLAAPQIGIDLQLVIFGFERSERYP 72 Query: 71 NP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + +NP I S + EGCLS+P R V R I+ +D + + Sbjct: 73 DAEAVPRTILLNPVITPMSTEVEDGWEGCLSVPGLRGVVPRYKHISYTGVDPDGNPIDRF 132 Query: 126 ADGLLATCLQHELDHLNGILF 146 ADG A +QHE DHL G L+ Sbjct: 133 ADGFHARVVQHECDHLIGRLY 153 >gi|284931676|gb|ADC31614.1| peptide deformylase [Mycoplasma gallisepticum str. F] Length = 196 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 16/165 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53 LV +P +R V ++ ++ +++++ID ML + + GIG+AA Q+G Sbjct: 12 LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIP-DYRADVKRSAFI 110 + R + D +++ + INP+ I + + + EGCLS+P D V RS + Sbjct: 72 LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ D Q + I A GLLA CLQHE+DHL G + D ++ +K Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176 >gi|115352107|ref|YP_773946.1| peptide deformylase [Burkholderia ambifaria AMMD] gi|115282095|gb|ABI87612.1| peptide deformylase [Burkholderia ambifaria AMMD] Length = 177 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 10/158 (6%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 DP L V++P+ + ++ ++ ++ +M E M+ +G GLAA QIG+ +L++ + Sbjct: 10 DPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLIIFGFGSNNRY 69 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A V INPK+ D EGCLS+P R V R A VRY + I Sbjct: 70 PDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYA--KVRYSGYDQFGAKI 127 Query: 125 --YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ ++ R T+ Sbjct: 128 DRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165 >gi|167035061|ref|YP_001670292.1| peptide deformylase [Pseudomonas putida GB-1] gi|166861549|gb|ABY99956.1| peptide deformylase [Pseudomonas putida GB-1] Length = 178 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 8/168 (4%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 D L R++ P+ + +++ LID+M E M G+GLAA QIG+ +LV+ + Sbjct: 10 DERLLRIAPPVPEHMLGTAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIFGFERSE 69 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + +NP I S + EGCLS+P R V R I +D Sbjct: 70 RYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYEGIDPQGNPI 129 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +ADG A +QHE DHL G L+ + + T+ + +++ D Sbjct: 130 NRFADGFHARVVQHECDHLIGRLYPSRIQDFAKFGYTEVLFPGLEVSD 177 >gi|310287535|ref|YP_003938793.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|309251471|gb|ADO53219.1| Peptide deformylase [Bifidobacterium bifidum S17] Length = 162 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + PDP+LR I +I + L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRTVPDPVLRTPCETIREITPAVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + S + EGCLS+P +R+ + VR +D + Sbjct: 61 YNINGKIG-----YVLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ GL+ LQHE DHL+G +++D L + +R + M + Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMRE 158 >gi|71737618|ref|YP_273728.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558171|gb|AAZ37382.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325402|gb|EFW81467.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076] Length = 179 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 12/155 (7%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +LV+ + Sbjct: 10 DERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSE 69 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + +NP I S EGCLS+P R V R + ++RY + + Q Sbjct: 70 RYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNR--YQSIRYEGFDPEGQ 127 Query: 123 II--YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A G A +QHE DHL G L+ ++ + Sbjct: 128 PVERVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|242373503|ref|ZP_04819077.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1] gi|242348866|gb|EES40468.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1] Length = 162 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +K LV PIL++ P+ + + ++ L+ ++ + +Y+ + + A QI V R+ + Sbjct: 1 MTRKKLVKSSHPILKKEIAPVTEFDENLSLLLKDLEDTLYAEEAAAICAPQINVNQRVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + INP + + SD+ EG +++P+ +V RS I ++ D N Sbjct: 61 IDME----MDGLLQLINPVVQSQSDEMITDLEGSITLPNTFGEVNRSKMIVIQSSDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DHLNGILF + +RL Sbjct: 117 QVELTAYDDVARMILHMIDHLNGILFTEKANRL 149 >gi|228992712|ref|ZP_04152638.1| Peptide deformylase (Polypeptide deformylase) [Bacillus pseudomycoides DSM 12442] gi|228998756|ref|ZP_04158342.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock3-17] gi|229006272|ref|ZP_04163956.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock1-4] gi|228754918|gb|EEM04279.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock1-4] gi|228760931|gb|EEM09891.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock3-17] gi|228767044|gb|EEM15681.1| Peptide deformylase (Polypeptide deformylase) [Bacillus pseudomycoides DSM 12442] Length = 184 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 22/161 (13%) Query: 11 DPILRRVSR--PIEKINSDIMNLID-----------NMLEVMYSTDGIGLAAVQIGVLYR 57 +PILR V+ P+ DI L + M+E GIG+AA QIG+ R Sbjct: 12 NPILRAVAEEVPLPASEEDIRTLKEMIELVINSQHPEMVEKYNLRPGIGIAAPQIGISKR 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDTNETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ + + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINQ 169 >gi|315658500|ref|ZP_07911372.1| peptide deformylase [Staphylococcus lugdunensis M23590] gi|315496829|gb|EFU85152.1| peptide deformylase [Staphylococcus lugdunensis M23590] Length = 162 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+ P+L+R ++ + + + + L+ ++ + +Y + L A QIG+ ++ + Sbjct: 1 MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++ + + INP II SD+ + EG +S+PD +V RS I V+ D Sbjct: 61 VDME----MEGLLQLINPTIIKASDEQVIDLEGSISLPDIYGEVARSQMIVVQSYDVQGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A +A +QH +D +NGI F + ++ D Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKILTD 152 >gi|52345870|ref|NP_001004979.1| peptide deformylase (mitochondrial) [Xenopus (Silurana) tropicalis] gi|49522476|gb|AAH75522.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis] gi|89268627|emb|CAJ82379.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis] Length = 239 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 11 DPILRRVSR--PIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR + P +I+ D +++ M+ V+ + +GL+A QIGV R++ + Sbjct: 68 DPVLRCTAARVPCAQISHPDTQAVVNQMVRVLRAGCCVGLSAPQIGVPLRILAVAFPQQM 127 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ P +FINP++ + EGC S+ + A V R + ++ Sbjct: 128 YQAVPPEVRNAREMSPFPLQIFINPEMRIVDSRTLSFPEGCSSVQGFSAVVPRYYAVELQ 187 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 M+ +H A G A +QHE+DHL+G+L+ID + Sbjct: 188 GMNPKGEHVTWQAQGWAARIIQHEMDHLDGVLYIDKM 224 >gi|308801120|ref|XP_003075341.1| Peptide deformylase (ISS) [Ostreococcus tauri] gi|116061895|emb|CAL52613.1| Peptide deformylase (ISS) [Ostreococcus tauri] Length = 243 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 33/180 (18%) Query: 3 KKPLVIFPDPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 ++ +V P LR ++ P E +++I LI M+ VM + G+GLAA Q+G+ R++ Sbjct: 33 QRDVVQAGAPALRDRAKEIDPREIDSAEIQELIGEMVRVMRAR-GVGLAAPQLGIRKRVI 91 Query: 60 VIDLQDH-----------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 V++ + + ++ P V INP + D +++ EGCLS+ YRA Sbjct: 92 VLEDTEEGMSDSSAEELASQKRAPFACTVIINPTLERVGDASAIFFEGCLSVAGYRA--- 148 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR--DMITKKM 162 I A G A LQHELDHL+G+L+ D + SR R DM+++ + Sbjct: 149 ---------CAATGNRSIYIATGWQARILQHELDHLDGVLYTDRMESRTFRRVDMLSEPL 199 >gi|7109689|gb|AAF36760.1| polypeptide deformylase [Mycoplasma gallisepticum] gi|28212477|gb|AAO37616.1| polypeptide deformylase [Mycoplasma gallisepticum] Length = 204 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 16/165 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53 LV +P +R V ++ ++ +++++ID ML + + GIG+AA Q+G Sbjct: 20 LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 79 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIP-DYRADVKRSAFI 110 + R + D +++ + INP+ I + + + EGCLS+P D V RS + Sbjct: 80 LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 139 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ D Q + I A GLLA CLQHE+DHL G + D ++ +K Sbjct: 140 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 184 >gi|325279635|ref|YP_004252177.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] gi|324311444|gb|ADY31997.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] Length = 220 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 30/135 (22%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRA 102 G+G+AA Q+G+ RL+ + Q + P F INP I++ S++ S+ +EGCLS+PD Sbjct: 85 GVGIAAPQVGISRRLIAV--QRYDKPGAPFEFYINPGIVSASEEQSLGKEGCLSVPDVVG 142 Query: 103 DVKRSAFITVRYM---------------------DCNAQHQIIYAD------GLLATCLQ 135 +V RS I VRY+ + +++ + G A Q Sbjct: 143 EVWRSNEIVVRYIPELTSIKRMLSREKTDSTFKFEVKVEYRNTWEPVCDTIRGFTAVIFQ 202 Query: 136 HELDHLNGILFIDHL 150 HE+DHLNGILF D + Sbjct: 203 HEIDHLNGILFTDKM 217 >gi|212716218|ref|ZP_03324346.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM 16992] gi|212660730|gb|EEB21305.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM 16992] Length = 218 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 15/157 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ + E S + LI+ M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 DH + V INP + + EGCLS Y+A KR IT Sbjct: 90 --DHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDIT 147 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R+ D + + + G A QHE DHL+G L+ID Sbjct: 148 ARWQDEDGKQHEEHLHGWPARIFQHETDHLSGELYID 184 >gi|323488852|ref|ZP_08094092.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2] gi|323397550|gb|EGA90356.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2] Length = 188 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 10/130 (7%) Query: 28 IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS-- 84 ++N D+ L Y G+G+AA Q+ R+ + D+ +V NPKI++ S Sbjct: 41 VVNSQDDELAEKYDLRPGVGIAAPQVNQAKRIFALHFDDNTGENLSLVVFNPKIVSHSVE 100 Query: 85 DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 + EGCLS+ P Y V R A IT++ ++ N + + GL A QHELDH Sbjct: 101 KTYLAAGEGCLSVDRAVPGY---VPRYARITIKALNINGEEIKMRLKGLPAIAFQHELDH 157 Query: 141 LNGILFIDHL 150 LNG++F DH+ Sbjct: 158 LNGVMFFDHI 167 >gi|283456090|ref|YP_003360654.1| peptide deformylase [Bifidobacterium dentium Bd1] gi|283102724|gb|ADB09830.1| def Peptide deformylase [Bifidobacterium dentium Bd1] Length = 153 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PDP+LR PI++I + +L+ ++L+ + GL+A QIGV R ++ Sbjct: 1 MPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNIDGKI- 59 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +NP ++ + EGCLS+P +R+ + VR +D + ++ G Sbjct: 60 ----GYVLNP-VLEETSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHG 114 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ LQHE DHL+G +++D L + +R + M Q Sbjct: 115 IMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRNHRQ 153 >gi|168184095|ref|ZP_02618759.1| putative peptide deformylase [Clostridium botulinum Bf] gi|237794165|ref|YP_002861717.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|182672791|gb|EDT84752.1| putative peptide deformylase [Clostridium botulinum Bf] gi|229261785|gb|ACQ52818.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 166 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 11/169 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M KP+++ D IL R+S I+K N D ++N + + + + G G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D + FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKTY-----YFINPILEFIGDDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + N + +Y +G L+ QHE DHL+GIL + LK I K S Sbjct: 116 KNLNWEDCEMYLEGGLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164 >gi|66806299|ref|XP_636872.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4] gi|60465273|gb|EAL63366.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4] Length = 243 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 55/206 (26%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST----DGIGLAAVQIGVLYR 57 + K +V + +LR + P K + + ++ +LE MY G G+AA QIGV + Sbjct: 6 ISKNIVKVGNKLLREKALPWSKEELNDVRRVEKLLEKMYKEMKDCTGTGIAAPQIGVNKQ 65 Query: 58 LVVIDLQDHAHRKNP----MVFINPKII------------TFSD------------DFSV 89 L +++L P F NPKI T +D + S Sbjct: 66 LFLLELPSQEGLNCPNFPLTAFFNPKIKLIDQDVTKPSRRTITDFKKFLHGSEKLLNLSQ 125 Query: 90 YQ-----------------------EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 Y+ E CLS+P+ A V+RS + ++D + +II A Sbjct: 126 YKTKFQTEESTLPTIPTENNTITMLESCLSVPNIFAHVQRSKRCIITFLDITGKERIIEA 185 Query: 127 DGLLATCLQHELDHLNGILFIDHLSR 152 DG+LA C QHE DHL G +FID + + Sbjct: 186 DGILAACFQHEYDHLLGKIFIDRIDK 211 >gi|26991243|ref|NP_746668.1| peptide deformylase [Pseudomonas putida KT2440] gi|32363154|sp|Q88EA7|DEF2_PSEPK RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|24986296|gb|AAN70132.1|AE016653_3 polypeptide deformylase [Pseudomonas putida KT2440] Length = 178 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 8/144 (5%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 D L R++ P+ + ++++ LID+M E M G+GLAA Q+G+ +LV+ + Sbjct: 10 DERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIFGFERSE 69 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + +NP I S + EGCLS+P R V R I + +D Sbjct: 70 RYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQGIDPQGSPI 129 Query: 123 IIYADGLLATCLQHELDHLNGILF 146 +ADG A +QHE DHL G L+ Sbjct: 130 NRFADGFHARVVQHECDHLIGRLY 153 >gi|171742295|ref|ZP_02918102.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC 27678] gi|171277909|gb|EDT45570.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC 27678] Length = 242 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 72/157 (45%), Gaps = 15/157 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ + E S + LID M M G+GLAA QIG+ L V+ Sbjct: 54 PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVV- 112 Query: 63 LQDHAHRKN----------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +DH + P V INP + EGCLS Y+A KR IT Sbjct: 113 -EDHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDIT 171 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R+ D + + G A QHE DHL+G L+ID Sbjct: 172 ARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYID 208 >gi|306822240|ref|ZP_07455622.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|309802249|ref|ZP_07696357.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] gi|304554622|gb|EFM42527.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|308221132|gb|EFO77436.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] Length = 242 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 71/155 (45%), Gaps = 11/155 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+V +P+LR+ + E S + LID M M G+GLAA QIG+ L V+ Sbjct: 54 PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVVE 113 Query: 62 ----DLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D D R+ V INP + EGCLS Y+A KR IT R Sbjct: 114 DHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDITAR 173 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + D + + G A QHE DHL+G L+ID Sbjct: 174 WQDEDGNRHEEHLHGWPARIFQHETDHLSGELYID 208 >gi|229086539|ref|ZP_04218711.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-44] gi|228696856|gb|EEL49669.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-44] Length = 184 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 22/161 (13%) Query: 11 DPILRRVSR--PIEKINSDIMNLID-----------NMLEVMYSTDGIGLAAVQIGVLYR 57 +PILR V+ P+ +D+ L + M+E GIG+AA QIG+ R Sbjct: 12 NPILRAVAEEVPLPASEADLRTLKEMIEFVINSQNPEMVEKYNLRPGIGIAAPQIGISKR 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111 ++ + + D NPKII+ S + + EGCLS+ P Y V R IT Sbjct: 72 MIAVHVTDANETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGY---VPRYTRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ + + + GL A QHE+DHLNG++F DH+++ Sbjct: 129 VKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINQ 169 >gi|148259391|ref|YP_001233518.1| peptide deformylase [Acidiphilium cryptum JF-5] gi|146401072|gb|ABQ29599.1| peptide deformylase [Acidiphilium cryptum JF-5] Length = 209 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 8/147 (5%) Query: 12 PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD----- 65 P+L + P+ + +I L+ +M E + G+GLAA Q+ V RL + + + Sbjct: 37 PVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLFIYRVPESRAGG 96 Query: 66 --HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 H + INP+++ + EGCLSIP A V R+A +T+R +D Sbjct: 97 GEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTLRAIDATGAPFS 156 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150 A G A +QHE DHL+GIL+ L Sbjct: 157 REAAGFHARVIQHEADHLDGILYPQRL 183 >gi|314933389|ref|ZP_07840754.1| peptide deformylase [Staphylococcus caprae C87] gi|313653539|gb|EFS17296.1| peptide deformylase [Staphylococcus caprae C87] Length = 162 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL++ + + + + + +L+ ++ + +Y+ + ++A QIGV R+ + Sbjct: 1 MTVKKLVKSTHPILKKEIKTVNQYDDQLKSLLQDLEDTLYAEEAAAISAPQIGVNQRVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + INP I + SD+ EG +++P+ +V RS I V+ D N Sbjct: 61 IDME----LEGLLQLINPVIKSHSDEEITDLEGSITLPNIFGEVTRSKMIVVQCNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DHLNGILF + +R+ Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTEKANRI 149 >gi|283456600|ref|YP_003361164.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1] gi|283103234|gb|ADB10340.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1] Length = 218 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 72/157 (45%), Gaps = 15/157 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ + E S + LID M M G+GLAA QIG+ L V+ Sbjct: 30 PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVV- 88 Query: 63 LQDHAHRKN----------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +DH + P V INP + EGCLS Y+A KR IT Sbjct: 89 -EDHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDIT 147 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R+ D + + G A QHE DHL+G L+ID Sbjct: 148 ARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYID 184 >gi|325963300|ref|YP_004241206.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469387|gb|ADX73072.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] Length = 226 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 12/156 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-- 60 P+V P LR+ + + S + LI M EVM+ G+GLAA Q+G+ ++ V Sbjct: 30 PIVQAGHPALRQRAAAYDGQLSAVQLDGLISLMREVMHEAPGVGLAAPQLGIPLQIAVVE 89 Query: 61 ----IDLQDHAHRK-NPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D + A RK +P+ F +NP+ D + + EGCLS+ +A V R + + Sbjct: 90 DQYDVDPEAAALRKRSPLEFLAIVNPRYTPLGTDMASFYEGCLSLNGLQAVVARPEKVLL 149 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + + +G A +QHE DHLNG+L++D Sbjct: 150 EFQAPDGSGVQREFEGWQARIVQHETDHLNGVLYVD 185 >gi|118465399|ref|YP_883852.1| peptide deformylase [Mycobacterium avium 104] gi|118166686|gb|ABK67583.1| polypeptide deformylase [Mycobacterium avium 104] Length = 177 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 23 KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKNPMVFINPKI 80 + +D++ LI +M + M + G+GLAA QIGV R+ V D D + V +NP + Sbjct: 8 SLPADLVKLIADMYDTMDAAHGVGLAANQIGVGLRVFVYDCADDRGLTERRRGVVVNPVL 67 Query: 81 ITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 T D EGCLS+P R+++ V +D + I GL A LQ Sbjct: 68 ETSEIPETMPDPDTDDEGCLSVPGESFPTGRASWARVTGLDADGSPVSIEGHGLFARMLQ 127 Query: 136 HELDHLNGILFIDHL 150 HE HL+G L++D L Sbjct: 128 HETGHLDGFLYLDRL 142 >gi|220912690|ref|YP_002487999.1| peptide deformylase [Arthrobacter chlorophenolicus A6] gi|219859568|gb|ACL39910.1| formylmethionine deformylase [Arthrobacter chlorophenolicus A6] Length = 226 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 12/156 (7%) Query: 5 PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V P LR+ + P + + LI+ M +VM+ G+GLAA Q+G+ +L V++ Sbjct: 30 PIVQAGHPALRQKAAPFDGQITPEQLARLIELMRQVMHEAPGVGLAAPQLGIPLQLAVLE 89 Query: 63 LQ---DHA----HRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + DH + P+ F +NP D + + EGCLS+ +A V R + + Sbjct: 90 DKYDVDHEAAALRNRAPLDFLAILNPSYTPAGPDRAAFYEGCLSLNGLQAVVSRPQAVLL 149 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 ++ + + G A +QHE DHLNGIL++D Sbjct: 150 DFVRPDGGAERRGFSGWQARIVQHETDHLNGILYVD 185 >gi|240168904|ref|ZP_04747563.1| peptide deformylase [Mycobacterium kansasii ATCC 12478] Length = 197 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 16/164 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++PI + +D+ LI +M + M + G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTPTKPIPVGADGSLPADLPQLITDMYDTMDAAYGVGLAANQIGHG 60 Query: 56 YRLVVIDLQDH----AHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKR 106 R+ V D + A R+ V INP + T D +EGCLS+P R Sbjct: 61 LRVFVYDCAEDRGKTARRRG--VVINPVLETSEIPETMPDPDNDEEGCLSVPGESFPTGR 118 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + V + + I GL A LQHE HL+G L++D L Sbjct: 119 AKWARVTGLGADGAPVDIEGTGLFARMLQHETGHLDGFLYLDCL 162 >gi|257486818|ref|ZP_05640859.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988665|gb|EGH86768.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010288|gb|EGH90344.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 179 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 12/152 (7%) Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65 L R++ P+ +S + LI +M E M+S G+GLAA QIG+ +LV+ + Sbjct: 13 LLRIAPPVPADMFGSSKLNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSERYP 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124 A + +NP I S EGCLS+P R V R + ++RY + + Q + Sbjct: 73 QAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNR--YQSIRYEGFDPEGQPVE 130 Query: 125 -YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A +QHE DHL G L+ ++ + Sbjct: 131 RVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|253731832|ref|ZP_04865997.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724431|gb|EES93160.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|329728826|gb|EGG65247.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193] Length = 162 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ ++K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVKKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152 >gi|288553244|ref|YP_003425179.1| peptide deformylase [Bacillus pseudofirmus OF4] gi|288544404|gb|ADC48287.1| peptide deformylase [Bacillus pseudofirmus OF4] Length = 179 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 16/159 (10%) Query: 12 PILRRVSR----PIEKINSD--------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRL 58 P+LR V++ P K + + ++N D L Y G+G+AA QIG+ R+ Sbjct: 13 PVLREVAKEVPLPASKEDKETLQRMLDFVINSQDPELSEKYQLRPGVGIAAPQIGIAKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRYM 115 + + D M NPKII+ S + + + EGCLS+ D V R A ITV+ Sbjct: 73 FAVHVADDNDNLYSMGLFNPKIISHSVEETHLESGEGCLSVDRDIPGIVPRYARITVKGT 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + + + + GL++ QHE+DHLNGI+F D + K Sbjct: 133 NLDGEEVTLRLRGLVSIVFQHEMDHLNGIMFYDRIEGFK 171 >gi|54024621|ref|YP_118863.1| peptide deformylase [Nocardia farcinica IFM 10152] gi|54016129|dbj|BAD57499.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152] Length = 190 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 10/167 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I DP L ++P+ + ++ L+D++ + + + +G GLAA QIG + V Sbjct: 1 MAIRPILIAGDPRLTTPAQPVTVFDDELAALVDDLFDTLAAAEGAGLAANQIGDPRAVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL DH HR V +NP T + D EGCLS+P R+ V + Sbjct: 61 YDLVDHGHRYR-GVVVNPVAETSALPETMPDPEGDLEGCLSVPGEWYPTGRADRARVTGL 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMI 158 D + G LA CLQHE DHL G L+++ L +R R MI Sbjct: 120 DATGAPITVEGTGYLARCLQHETDHLAGRLYLERLLGRHARAARRMI 166 >gi|16078520|ref|NP_389339.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221309325|ref|ZP_03591172.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221313652|ref|ZP_03595457.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318574|ref|ZP_03599868.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322848|ref|ZP_03604142.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY] gi|6225248|sp|Q45495|DEF2_BACSU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|2633827|emb|CAB13329.1| formylmethionine deformylase A [Bacillus subtilis subsp. subtilis str. 168] gi|3282140|gb|AAC24930.1| unknown [Bacillus subtilis] gi|291483999|dbj|BAI85074.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195] Length = 184 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 24/161 (14%) Query: 12 PILRRVSRPIE--KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 P LR + P+E +++ L D M+E + ++ G+GLAA QI + R Sbjct: 13 PALRETAEPVELPPTDAEKQQLAD-MIEFVKNSQNPELAEKYKLRPGVGLAAPQINIKKR 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----IPDYRADVKRSAFIT 111 ++ + +D + + NPKI++ S + S EGCLS IP Y V R A I Sbjct: 72 MIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGY---VPRYARIR 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ ++ I G A QHE+DHLNG++F DH+ + Sbjct: 129 VKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDK 169 >gi|311029756|ref|ZP_07707846.1| peptide deformylase [Bacillus sp. m3-13] Length = 184 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 3/112 (2%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DY 100 G+GLAA QI V +++ + ++D + + NP+I++ S F EGCLS+ D Sbjct: 58 GVGLAAPQINVPKKMIAVHIRDESGTLHSYALFNPRIVSHSVEKSFLTSGEGCLSVDRDV 117 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV+ + + GL+A QHE+DHLNG++F DH+++ Sbjct: 118 PGLVPRYARVTVKATTLQGEEIKLRLKGLVAIVFQHEIDHLNGVMFYDHINQ 169 >gi|289625972|ref|ZP_06458926.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647973|ref|ZP_06479316.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250] gi|298488188|ref|ZP_07006225.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157467|gb|EFH98550.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869369|gb|EGH04078.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 179 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 8/153 (5%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +LV+ + Sbjct: 10 DERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSE 69 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + +NP I + EGCLS+P R V R I D + Q Sbjct: 70 RYPQAEAVPQTILLNPLITPLNPSLEEGWEGCLSVPGLRGMVNRYQSIRYEGFDPDGQRI 129 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A +QHE DHL G L+ ++ + Sbjct: 130 ERVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|301103913|ref|XP_002901042.1| peptide deformylase, putative [Phytophthora infestans T30-4] gi|262101380|gb|EEY59432.1| peptide deformylase, putative [Phytophthora infestans T30-4] Length = 210 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 6/152 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR--LVVID 62 LV + LRRVS+ + + + + L++++ + + G+G+AA Q+ R L++ D Sbjct: 3 LVFLGNSALRRVSKSVADVRAPAVRRLLEDLDKEVRLEAGVGIAAPQLAHNLRMFLMIKD 62 Query: 63 LQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + ++ + + + +NPKI+ S EGCLS+P Y+ ++R+ I V+Y D Sbjct: 63 MPENEDDLSKLEYQEVLNPKIVAMSKSSKRDFEGCLSVPGYQGIIERAEEIRVQYQDAEG 122 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A QHELDHLNG++++D L Sbjct: 123 RKIQETLTDFPARIFQHELDHLNGVMYLDRLE 154 >gi|301633662|gb|ADK87216.1| peptide deformylase [Mycoplasma pneumoniae FH] Length = 193 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 15 RRVSRPIEKINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVLYRLVVIDLQDH 66 + V P+++ + D + + ++ Y+ D GIG+AA QIG ++ I L D Sbjct: 23 KPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHLMDG 82 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAFITVRYMDCNAQHQI 123 ++ + INPKII S + S + EGCLS+P ++ V R +IT+ D Q +I Sbjct: 83 G-VEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQKEI 141 Query: 124 -IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I A GL CLQHE DHL G + ++ L + T K K++ Sbjct: 142 TITATGLFGMCLQHEFDHLQGRFYYHRINPL-NPLFTNKEWKVI 184 >gi|296331515|ref|ZP_06873986.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674182|ref|YP_003865854.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str. W23] gi|296151328|gb|EFG92206.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412426|gb|ADM37545.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str. W23] Length = 184 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 22/160 (13%) Query: 12 PILRRVSRPIEKINSDI-MNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58 P LR + P+E +D + +M+E + ++ G+GLAA QI + R+ Sbjct: 13 PALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLAAPQINIKKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----IPDYRADVKRSAFITV 112 + + +D + + NPKI++ S + S EGCLS IP Y V R A I V Sbjct: 73 IAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGY---VPRYARIRV 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++ I G A QHE+DHLNG++F DH+ + Sbjct: 130 KGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDK 169 >gi|325277883|ref|ZP_08143429.1| peptide deformylase [Pseudomonas sp. TJI-51] gi|324096986|gb|EGB95286.1| peptide deformylase [Pseudomonas sp. TJI-51] Length = 178 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 8/144 (5%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 D L RV+ P+ + ++ LID+M E M G+GLAA Q+G+ +LV+ + Sbjct: 10 DERLLRVAAPVPAQLLGSGELQQLIDDMFETMRHVGGVGLAAPQVGIELQLVIFGFERSE 69 Query: 67 ----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + +NP I S + EGCLS+P R V R I +D Sbjct: 70 RYPDAEAVPQTILLNPVITPTSTELEDGWEGCLSVPGLRGVVPRFKHICYEGIDPQGNAI 129 Query: 123 IIYADGLLATCLQHELDHLNGILF 146 +A+G A +QHE DHL G L+ Sbjct: 130 RRFAEGFHARVVQHECDHLIGRLY 153 >gi|295397404|ref|ZP_06807493.1| peptide deformylase [Aerococcus viridans ATCC 11563] gi|294974368|gb|EFG50106.1| peptide deformylase [Aerococcus viridans ATCC 11563] Length = 205 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 29/166 (17%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---L 55 P LR+ + I ++ +I L D+M+E + ++ G+G+AA Q+ V + Sbjct: 28 PTLRKKAEKITFPVSEEIRQLADDMMEFLRNSQDEELAEKYGLRGGVGIAAPQLDVSIQM 87 Query: 56 YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKR 106 L+V DL D P+ VF+NP++++ S + +EG CLS+ P Y V R Sbjct: 88 TALLVPDLMD-PENAEPLLNGVFLNPRVVSHSVEGVCLREGEGCLSVDRDVPGY---VPR 143 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A ITV Y D + G A LQHE+DHLNGI+F DH+S Sbjct: 144 HARITVTYNDIDGNEYKKRFSGYPAIVLQHEIDHLNGIMFYDHISE 189 >gi|227524090|ref|ZP_03954139.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] gi|227088721|gb|EEI24033.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] Length = 188 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 24/170 (14%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV--L 55 DP+LR+ ++ ++ +++D L N++E + + G+GLAA Q+GV + Sbjct: 12 DPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQVGVSKM 71 Query: 56 YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAF 109 V++ D + P+ V INP I++ S EG CLS+ D V RSA Sbjct: 72 MASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGYVPRSAR 131 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156 IT++Y D + I A QHE+DHL+GILF DH+++ KRD Sbjct: 132 ITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181 >gi|227512180|ref|ZP_03942229.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] gi|227084574|gb|EEI19886.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] Length = 185 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 24/170 (14%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV--L 55 DP+LR+ ++ ++ +++D L N++E + + G+GLAA Q+GV + Sbjct: 9 DPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQVGVSKM 68 Query: 56 YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAF 109 V++ D + P+ V INP I++ S EG CLS+ D V RSA Sbjct: 69 MASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGYVPRSAR 128 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156 IT++Y D + I A QHE+DHL+GILF DH+++ KRD Sbjct: 129 ITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 178 >gi|195107438|ref|XP_001998319.1| GI23899 [Drosophila mojavensis] gi|193914913|gb|EDW13780.1| GI23899 [Drosophila mojavensis] Length = 203 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR S + E+++S +I+ ++D M++V+ D +G+AA Q+GV R++ ++ ++ Sbjct: 21 DPVLRIRSDEVSPERLDSKEILGIVDQMVKVLRHYDCVGVAAPQLGVPLRIIAMEFREEK 80 Query: 68 HRK-NP-------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + P VFINPKI D EGC+S+ + A V R + V Sbjct: 81 REQFTPEVYLQRKMSTLPLSVFINPKIEIIGDMQHTQPEGCMSVRGFSARVARYDRVRVT 140 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + G A QHE+DHLNGI++ID + Sbjct: 141 GIGMLGTPDELELVGWSARIAQHEMDHLNGIIYIDRM 177 >gi|302779750|ref|XP_002971650.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii] gi|300160782|gb|EFJ27399.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii] Length = 166 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 15/150 (10%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ DP LR + I + + L ML+V Y DG+GL+A Q+GV RL+V + + Sbjct: 8 IVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARLMVFNPEG 64 Query: 66 HAHRKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + VF+NP I+ F + FS +S YR+++K D N + Sbjct: 65 ERGKGKEYVFVNPMIVKFGKEREARFSFIACVFVSRDRYRSELK--------AQDINGKK 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 G A +HE DHL G+L+ID ++ Sbjct: 117 FGTAFRGWTAGIFRHEYDHLEGVLYIDQMT 146 >gi|170761484|ref|YP_001786248.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch Maree] gi|169408473|gb|ACA56884.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch Maree] Length = 166 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 15/168 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M KP+++ D IL R S I+K N D ++N + + + + G G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITV 112 R++ + L D H FINP I+ F D F ++ + C+S P V+R V Sbjct: 61 SVRIIYMHLGDKTH-----YFINP-ILEFIGEDTFHLWDD-CMSFPGLEVYVERHKKCKV 113 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 Y + N + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 114 TYKNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|238026898|ref|YP_002911129.1| peptide deformylase [Burkholderia glumae BGR1] gi|237876092|gb|ACR28425.1| Peptide deformylase [Burkholderia glumae BGR1] Length = 177 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L V++P+E ++ ++ L+ +M E M+ +G GLAA QIGV +L++ ++A Sbjct: 10 DPRLLDVAKPVEAFDTPALHELVADMFETMHHANGAGLAAPQIGVGLQLIIFGFGNNARY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INP I D EGCLS+P R V R + D + Sbjct: 70 PDAPAVPETVLINPSIEYLPPDMEEGWEGCLSVPGMRGVVSRYRKVHYTGFDQYGKRIDR 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+ A +QHE DHL G L+ Sbjct: 130 IAEDFHARVVQHEYDHLIGKLY 151 >gi|300909945|ref|ZP_07127405.1| peptide deformylase [Lactobacillus reuteri SD2112] gi|300892593|gb|EFK85953.1| peptide deformylase [Lactobacillus reuteri SD2112] Length = 186 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 19/161 (11%) Query: 11 DPILRR----VSRPI----EKINSDIMNLID-----NMLEVMYSTDGIGLAAVQIGVLYR 57 +P+LR+ VS P+ +K+ D+M ++ + E G+GLAA Q+GV + Sbjct: 12 NPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAAPQVGVSKQ 71 Query: 58 LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111 + + + A + P+ V INP I++ S + EG CLS+ D V R IT Sbjct: 72 MAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 131 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 132 LRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172 >gi|13507984|ref|NP_109933.1| peptide deformylase [Mycoplasma pneumoniae M129] gi|2499923|sp|P75527|DEF_MYCPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1674288|gb|AAB96235.1| polypeptide deformylase [Mycoplasma pneumoniae M129] Length = 216 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 15 RRVSRPIEKINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVLYRLVVIDLQDH 66 + V P+++ + D + + ++ Y+ D GIG+AA QIG ++ I L D Sbjct: 46 KPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHLMDG 105 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAFITVRYMDCNAQHQI 123 ++ + INPKII S + S + EGCLS+P ++ V R +IT+ D Q +I Sbjct: 106 G-VEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQKEI 164 Query: 124 -IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I A GL CLQHE DHL G + ++ L + T K K++ Sbjct: 165 TITATGLFGMCLQHEFDHLQGRFYYHRINPL-NPLFTNKEWKVI 207 >gi|121604720|ref|YP_982049.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] gi|120593689|gb|ABM37128.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] Length = 179 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 13/146 (8%) Query: 11 DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D L RV++P+ ++D ++ L+ +M M S DG GLAA QIGV ++V+ D + Sbjct: 11 DARLLRVAKPVTAFDTDELHVLVSDMFYTMQSVDGAGLAAPQIGVDLQVVIFG-SDQLNP 69 Query: 70 KNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P V +NP I S D EGCLS+P R V R F +RY + Sbjct: 70 RYPAAPVVPRTVLVNPVITPLSADEESDWEGCLSVPGLRGMVPR--FSHIRYTGFDQYGD 127 Query: 123 II--YADGLLATCLQHELDHLNGILF 146 I DG A +QHE DHL G L+ Sbjct: 128 PIDRTVDGFHARVVQHECDHLIGKLY 153 >gi|124485039|ref|YP_001029655.1| peptide deformylase [Methanocorpusculum labreanum Z] gi|124362580|gb|ABN06388.1| peptide deformylase [Methanocorpusculum labreanum Z] Length = 157 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 8/157 (5%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + DP+L + ++ I + ++ NM + M IGL+A QIGV RL +++ Sbjct: 8 YGDPVLFLHAETVQNIGPLELEILTNMWDTMIHNKCIGLSAPQIGVSKRLFIVNAGGVTI 67 Query: 69 R-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + NP V ++ EG IP + V+R IT RY+D + + Sbjct: 68 KGANPEVLKEGALVE-------EMEGSPCIPGIQRPVRRPGKITCRYLDISGETIETELK 120 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G+ A HE DH GIL++DHL +++ MI K + K Sbjct: 121 GIAARAFLHEKDHHEGILYLDHLKPIQKRMILKSLEK 157 >gi|227544835|ref|ZP_03974884.1| peptide deformylase [Lactobacillus reuteri CF48-3A] gi|227185182|gb|EEI65253.1| peptide deformylase [Lactobacillus reuteri CF48-3A] Length = 183 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 19/161 (11%) Query: 11 DPILRR----VSRPI----EKINSDIMNLID-----NMLEVMYSTDGIGLAAVQIGVLYR 57 +P+LR+ VS P+ +K+ D+M ++ + E G+GLAA Q+GV + Sbjct: 9 NPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAAPQVGVSKQ 68 Query: 58 LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111 + + + A + P+ V INP I++ S + EG CLS+ D V R IT Sbjct: 69 MAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 129 LRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 169 >gi|315931997|gb|EFV10950.1| polypeptide deformylase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 102 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 50/80 (62%) Query: 76 INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 INP+II ++ EGCLS+PD+ +VKR I ++Y D + + + A G LA +Q Sbjct: 5 INPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQ 64 Query: 136 HELDHLNGILFIDHLSRLKR 155 HE DHLNG LFI+ +S KR Sbjct: 65 HENDHLNGHLFIEKISFAKR 84 >gi|239826455|ref|YP_002949079.1| peptide deformylase [Geobacillus sp. WCH70] gi|239806748|gb|ACS23813.1| peptide deformylase [Geobacillus sp. WCH70] Length = 184 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 22/158 (13%) Query: 12 PILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQIGVLYRL 58 P LR+V+ P+ S+ + +L+D + E GIGLAA QI V R+ Sbjct: 13 PTLRKVAEPVSLPPSEEDKQVLQSLLDYVKMSQNPELAEKYGLRPGIGLAAPQINVSKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITV 112 + + + D NPKI++ S + EGCLS+ P Y V R A ITV Sbjct: 73 IAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGY---VPRYARITV 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + GL A QHE+DHLNGI+F DH+ Sbjct: 130 TGTTLEGKEVTLRLKGLPAIVFQHEIDHLNGIMFYDHI 167 >gi|312111833|ref|YP_003990149.1| peptide deformylase [Geobacillus sp. Y4.1MC1] gi|311216934|gb|ADP75538.1| peptide deformylase [Geobacillus sp. Y4.1MC1] Length = 185 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 75/158 (47%), Gaps = 22/158 (13%) Query: 12 PILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQIGVLYRL 58 P LR+V+ P+ S+ + +L+D + E GIGLAA QI V R+ Sbjct: 14 PTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGIGLAAPQINVSKRM 73 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITV 112 + + + D NPKI++ S + EGCLS+ P Y V R A ITV Sbjct: 74 IAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGY---VPRYARITV 130 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + + GL A QHE+DHLNGI+F DH+ Sbjct: 131 TGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHI 168 >gi|118780782|ref|XP_310421.3| AGAP003861-PA [Anopheles gambiae str. PEST] gi|116131029|gb|EAA06035.3| AGAP003861-PA [Anopheles gambiae str. PEST] Length = 241 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+LR + I E ++++ L ++ +VM + +GLAA Q+G+ R V++ Sbjct: 53 IVQLGDPVLRVPANAIPEKELQSAEVQYLARHLTKVMRAYRCVGLAAPQLGLSLRAFVME 112 Query: 63 LQDHAHRK-----------NPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 +D + P+ + +NP++ + + ++ E C S+ YRADV R Sbjct: 113 FKDELRDQYTKADYKLREMEPLPLTILLNPELKVLNYEKVIHTEACESVRGYRADVPRYR 172 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I ++ D Q + G A QHE+DHLNGI++ D ++R Sbjct: 173 EILLQGFDATGNRQELRLSGWNARIAQHEMDHLNGIVYTDIMNR 216 >gi|148378868|ref|YP_001253409.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|153931530|ref|YP_001383251.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153936227|ref|YP_001386800.1| putative peptide deformylase [Clostridium botulinum A str. Hall] gi|148288352|emb|CAL82429.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|152927574|gb|ABS33074.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152932141|gb|ABS37640.1| putative peptide deformylase [Clostridium botulinum A str. Hall] Length = 166 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 15/171 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M KP+++ D IL R+S I+K N D ++N + + + + G G +AA QIG Sbjct: 1 MSTKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITV 112 R++ + L D H FINP I+ F D F ++ + C+S P V+R V Sbjct: 61 SVRIIYMHLGDKTH-----YFINP-ILEFIGEDTFHLWDD-CMSFPGLEVYVERHKKCKV 113 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Y + + + +Y +G L+ QHE DHL+GIL + LK I K S Sbjct: 114 TYKNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164 >gi|194468417|ref|ZP_03074403.1| peptide deformylase [Lactobacillus reuteri 100-23] gi|194453270|gb|EDX42168.1| peptide deformylase [Lactobacillus reuteri 100-23] Length = 186 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 19/161 (11%) Query: 11 DPILRR----VSRPI----EKINSDIMNLID-----NMLEVMYSTDGIGLAAVQIGVLYR 57 +P+LR+ VS P+ +K+ D+M ++ + E G+GLAA Q+GV + Sbjct: 12 NPVLRKRAAKVSFPLSDEDQKLAKDMMEYLEVSQDPELCEKYKLRAGVGLAAPQVGVSKQ 71 Query: 58 LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111 + + + A + P+ V INP I++ S + EG CLS+ D V R IT Sbjct: 72 MAAVLVPAPAEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 131 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 132 LRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172 >gi|320327457|gb|EFW83470.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] gi|330877286|gb|EGH11435.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 179 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 D L R++ P+ +S++ LI +M E ++S G+GLAA QIG+ +LV+ + Sbjct: 10 DERLLRIAPPVPADMFGSSELNTLIADMFETIHSVGGVGLAAPQIGIDLQLVIFGFERSE 69 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + +NP I S EGCLS+P R V R + ++RY + + Q Sbjct: 70 RYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNR--YQSIRYEGFDPEGQ 127 Query: 123 II--YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A G A +QHE DHL G L+ ++ + Sbjct: 128 PVERVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|195157968|ref|XP_002019866.1| GL12633 [Drosophila persimilis] gi|194116457|gb|EDW38500.1| GL12633 [Drosophila persimilis] Length = 238 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 17/159 (10%) Query: 11 DPILRR--VSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR+ + P+E I +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 56 DPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFKKSL 115 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ P V INP + + + EGC+S+ + A+V+R + + Sbjct: 116 QKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGVKLS 175 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D +++ + G A QHE+DHL+G L+ D + R Sbjct: 176 GLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214 >gi|125778498|ref|XP_001360007.1| GA16144 [Drosophila pseudoobscura pseudoobscura] gi|54639757|gb|EAL29159.1| GA16144 [Drosophila pseudoobscura pseudoobscura] Length = 238 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 17/159 (10%) Query: 11 DPILRR--VSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR+ + P+E I +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 56 DPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFKKSL 115 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ P V INP + + + EGC+S+ + A+V+R + + Sbjct: 116 QKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGVKLS 175 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D +++ + G A QHE+DHL+G L+ D + R Sbjct: 176 GLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214 >gi|229817289|ref|ZP_04447571.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM 20098] gi|229785078|gb|EEP21192.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM 20098] Length = 217 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V Sbjct: 30 PIVQAGEPVLRQQTVAYTGQLSKHTLAKLIDAMRTTMLEAPGVGLAATQIGLGLALAV-- 87 Query: 63 LQDHAH--RKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L+DH +P V INP + + EGCLS Y+A KR I Sbjct: 88 LEDHIRDDEDDPREIGELPFHVIINPVYAPVGTETRSFYEGCLSFDGYQAVRKRWLDIDA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + D N H G A QHE DHL+G L+ID Sbjct: 148 EWDDENGMHHKERMHGWPARIFQHETDHLSGELYID 183 >gi|227505915|ref|ZP_03935964.1| peptide deformylase [Corynebacterium striatum ATCC 6940] gi|227197437|gb|EEI77485.1| peptide deformylase [Corynebacterium striatum ATCC 6940] Length = 206 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 82/178 (46%), Gaps = 26/178 (14%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P+VI DP+L + P+ E I+S ++ LI +M E M G+GLAA Q+G+ RL Sbjct: 1 MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMYETMDVAHGVGLAANQVGINKRL 60 Query: 59 VVIDLQD-------------HAHRKNPMVFINPKIITF-------SDDFSVYQEGCLSIP 98 V D RK INP + T +DD S EGCLS+P Sbjct: 61 FVYHCPDTDGPEGTELPADKAGMRKG--CVINPVLETSEIPEGMPADDGS-EDEGCLSVP 117 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKR 155 R+ + V D + I G A LQHE HL+G ++ D L+ R KR Sbjct: 118 GEGFPTGRADWARVTGKDEHGNDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRFKR 175 >gi|119026311|ref|YP_910156.1| peptide deformylase [Bifidobacterium adolescentis ATCC 15703] gi|154488206|ref|ZP_02029323.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis L2-32] gi|158512525|sp|A1A2Z1|DEF_BIFAA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|118765895|dbj|BAF40074.1| peptide deformylase 1 [Bifidobacterium adolescentis ATCC 15703] gi|154083357|gb|EDN82402.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis L2-32] Length = 218 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 11/156 (7%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ ++ + + LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQQTIAYDGQLSRKTLDKLIDTMRTTMLEAPGVGLAATQIGLGLALAVVE 89 Query: 63 ----LQDHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D + F INP + + EGCLS Y+A KR IT R Sbjct: 90 DHVCEGDDGDPREAAEFPFHAIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDITAR 149 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + + G A QHE DHL+G L+ID Sbjct: 150 WQDEDGNKHEEHLHGWPARIFQHETDHLSGELYIDQ 185 >gi|167570376|ref|ZP_02363250.1| peptide deformylase [Burkholderia oklahomensis C6786] Length = 177 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 6/139 (4%) Query: 14 LRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKN 71 L V+RP+E N+ ++ L+ +M E M+ +G GLAA Q+GV ++++ + + Sbjct: 13 LLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVIIFGFGSSERYPEA 72 Query: 72 P----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P V +NP + D EGCLS+P R V R + D + A+ Sbjct: 73 PPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQFGEKLERVAE 132 Query: 128 GLLATCLQHELDHLNGILF 146 G A +QHE DHL G L+ Sbjct: 133 GFHARVVQHEYDHLIGKLY 151 >gi|297204169|ref|ZP_06921566.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] gi|197714146|gb|EDY58180.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] Length = 218 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%) Query: 5 PLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+V DP+LR+ IE + + ++ + M++ G+GLAA Q+GV R+ Sbjct: 25 PIVAAGDPVLRQG---IEHYDGHLDGALLSRFVEALRVTMHAAPGVGLAAPQVGVPLRIA 81 Query: 60 VIDLQDH-------AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 VI+ A + P F +NP + + EGCLS+P ++A V R A Sbjct: 82 VIEDPAPVPEEIRLARGRVPQPFRVLVNPSYAPVGTPRAAFFEGCLSVPGWQAVVARPAE 141 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + + D N + G A +QHE DHL+G+L++D Sbjct: 142 VRLTCEDENGRAVDEVFSGWPARIVQHETDHLDGVLYLD 180 >gi|73957448|ref|XP_853641.1| PREDICTED: similar to peptide deformylase-like protein [Canis familiaris] Length = 242 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP LR V+ P+E + L+ +++VM +GL+A Q+GV +++ + + Sbjct: 71 DPALRTVAAPVEPAQLAGPQLQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLAFEFPEAL 130 Query: 68 HRK-----------NPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R P V +NP + + EGC S+ + A V R + + Sbjct: 131 FRACAPRLRETRQMEPFPLRVVVNPSLRVLDSRRVTFPEGCESVAGFLACVPRFQAVQIS 190 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D + + A G A +QHE+DHL G LFID + Sbjct: 191 GLDPKGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 227 >gi|295399645|ref|ZP_06809626.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] gi|294978048|gb|EFG53645.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] Length = 184 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 75/158 (47%), Gaps = 22/158 (13%) Query: 12 PILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQIGVLYRL 58 P LR+V+ P+ S+ + +L+D + E GIGLAA QI V R+ Sbjct: 13 PTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGIGLAAPQINVSKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITV 112 + + + D NPKI++ S + EGCLS+ P Y V R A ITV Sbjct: 73 IAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGY---VPRYARITV 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + + GL A QHE+DHLNGI+F DH+ Sbjct: 130 TGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHI 167 >gi|312868986|ref|ZP_07729164.1| peptide deformylase [Lactobacillus oris PB013-T2-3] gi|311095489|gb|EFQ53755.1| peptide deformylase [Lactobacillus oris PB013-T2-3] Length = 186 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 19/163 (11%) Query: 11 DPILRR----VSRPIEKINSDIMNLIDNMLEVMYSTD---------GIGLAAVQIGVLYR 57 DP+LR+ VS P+ + ++ + LEV + G+GLAA Q+GV + Sbjct: 12 DPVLRKRAAKVSFPLSDEDQELAKKMMEYLEVSQDPELCEKYKLRAGVGLAAPQVGVSKQ 71 Query: 58 LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111 + + + P V INP I++ S + EG CLS+ D V R IT Sbjct: 72 MAAVLVPATEEGGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 131 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +RY D N + + A QHE+DHL+G+LF DH+++ K Sbjct: 132 LRYQDTNGEKHQVRLKNYPAIVCQHEIDHLHGMLFYDHINKQK 174 >gi|238061746|ref|ZP_04606455.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883557|gb|EEP72385.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 509 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 11/148 (7%) Query: 13 ILRRVSR----PIEK-INSDIMNLIDNML----EVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +LR+ SR P E + ++++ + + L E+ + G+G+AA Q+G+ + V+ Sbjct: 344 LLRQPSRQFDLPAEAGVAREVVDRLGSALVRLDELHPFSKGVGIAATQLGLAWAAAVVRP 403 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D A P+V +NP+++ S D EGCLS D+R V RS I V + + I Sbjct: 404 PDRA--AEPVVLLNPRVVDSSPDTDEQYEGCLSFFDHRGLVPRSLRIDVEHAQWDGGRLI 461 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + +A + HE+DHL G L++D ++ Sbjct: 462 TSFEFAMARLVAHEIDHLEGRLYVDRMT 489 >gi|138894591|ref|YP_001125044.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2] gi|196247801|ref|ZP_03146503.1| peptide deformylase [Geobacillus sp. G11MC16] gi|134266104|gb|ABO66299.1| N-formyl-methionyl-aminoacyl-tRNA deformylase [Geobacillus thermodenitrificans NG80-2] gi|196212585|gb|EDY07342.1| peptide deformylase [Geobacillus sp. G11MC16] Length = 184 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 22/159 (13%) Query: 12 PILRRVSRPIEKINSD-----IMNLIDNM-------LEVMYS-TDGIGLAAVQIGVLYRL 58 P LR+V+ P+ S+ + +L+D + + Y GIGLAA QI V R+ Sbjct: 13 PTLRKVAEPVPLPASEEDKRILQSLLDYLKMSQDPEMAAKYGLRPGIGLAAPQINVSKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITV 112 + + + D NPKI++ S + EGCLS+ P Y V R A ITV Sbjct: 73 IAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGY---VPRYARITV 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + + GL A QHE+DHLNGI+F DH++ Sbjct: 130 TGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIN 168 >gi|321315214|ref|YP_004207501.1| peptide deformylase [Bacillus subtilis BSn5] gi|320021488|gb|ADV96474.1| peptide deformylase [Bacillus subtilis BSn5] Length = 184 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 24/161 (14%) Query: 12 PILRRVSRPIE--KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 P LR + P+E +++ L D M+E + ++ G+GLAA QI + R Sbjct: 13 PALRETAEPVELPPTDAEKQQLAD-MIEFVKNSQNPELAEKYKLRPGVGLAAPQINIKKR 71 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----IPDYRADVKRSAFIT 111 ++ + +D + + NPKI++ S + S EGCLS IP Y V R + I Sbjct: 72 MIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGY---VPRYSRIR 128 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ ++ I G A QHE+DHLNG++F DH+ + Sbjct: 129 VKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDK 169 >gi|253733547|ref|ZP_04867712.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|258423742|ref|ZP_05686628.1| polypeptide deformylase [Staphylococcus aureus A9635] gi|253728601|gb|EES97330.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|257845974|gb|EEV70002.1| polypeptide deformylase [Staphylococcus aureus A9635] Length = 162 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVVKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152 >gi|323454882|gb|EGB10751.1| hypothetical protein AURANDRAFT_22058 [Aureococcus anophagefferens] Length = 175 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 9/146 (6%) Query: 12 PILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 P LR ++P+ + + ++ ++++ M +G G+A QIG +R+ V++ Sbjct: 30 PCLREQAKPVPEAMFGTPALDAIVADLVDTMRDANGAGIAGPQIGEGWRIFVVEGSGANP 89 Query: 69 R-----KNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 R K P+ VF+NP++ + EGCLSIP R V R++ + + Sbjct: 90 RYPYKPKLPLTVFVNPELEVVDEAPMEIFEGCLSIPGVRGRVARASKVRCAARRPDGSSF 149 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 + A G A LQHE DHL+GILF D Sbjct: 150 SVLAAGHAAGTLQHEQDHLDGILFPD 175 >gi|289551005|ref|YP_003471909.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] gi|289180537|gb|ADC87782.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] Length = 162 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+ P+L+R ++ + + + + L+ ++ + +Y + L A QIG+ ++ + Sbjct: 1 MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++ + + INP II SD+ + EG +S+P +V RS I V+ D Sbjct: 61 VDME----MEGLLQLINPTIIKVSDEQVIDLEGSISLPGIYGEVARSQMIVVQSYDVQGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A +A +QH +D +NGI F + ++ D Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKILTD 152 >gi|134094555|ref|YP_001099630.1| peptide deformylase 2 like proterin [Herminiimonas arsenicoxydans] gi|133738458|emb|CAL61503.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas arsenicoxydans] Length = 178 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L RV+ P+++ N+ +N LI +M + M++ G GLAA QIGV RLV+ + + Sbjct: 11 DPRLLRVAEPVKEFNTPELNALIADMFDTMHAAHGAGLAAPQIGVNLRLVIYGFKQNTRY 70 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INPK+ S + EGCLS+P R V R + + D + Sbjct: 71 PDAPPVPETVLINPKLRPLSSEREEGWEGCLSVPGLRGVVPRFSSLHYEGFDQFGKAISR 130 Query: 125 YADGLLATCLQHELDHLNGILF 146 ADG A +QHE DHL+GIL+ Sbjct: 131 DADGFHARVVQHECDHLDGILY 152 >gi|255082960|ref|XP_002504466.1| predicted protein [Micromonas sp. RCC299] gi|226519734|gb|ACO65724.1| predicted protein [Micromonas sp. RCC299] Length = 285 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 31/156 (19%) Query: 12 PILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66 P+LR+++ P+++I+S I LI M+ +M + G+GLAA QIGV YR+ V++ + Sbjct: 73 PVLRQMAEEIPLDRIDSATIQELIQEMISIMRNR-GVGLAAPQIGVPYRIFVMEDTEEGM 131 Query: 67 ---------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 A + P V INP + S+ + EGCLS+ VR Sbjct: 132 SDVSKDDLVAQERAPFPAKVIINPTVTPVSNQSCAFFEGCLSV-------------RVRG 178 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + A G A QHE+DHL+G+L++D + Sbjct: 179 YGGDGKPVDFVAKGWQARIAQHEMDHLDGVLYVDRM 214 >gi|225351798|ref|ZP_03742821.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158142|gb|EEG71425.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 218 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 15/157 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ + E S + LI+ M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 DH + V INP + + EGCLS Y+A KR I Sbjct: 90 --DHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDII 147 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R+ D + + + G A QHE DHL+G L+ID Sbjct: 148 ARWQDEDGKQHEEHLHGWPARIFQHETDHLSGELYID 184 >gi|327287510|ref|XP_003228472.1| PREDICTED: peptide deformylase, mitochondrial-like [Anolis carolinensis] Length = 236 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+LR ++ P+E D+ LI ++ +M + L+A Q+G+ ++ V + Sbjct: 65 DPVLRSLAAPVEPSQVTGKDVQALIQRLVRLMRRERCVALSAPQVGIPLQVFVAEYPTRL 124 Query: 63 LQDH------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 L++H A + P VFINP + + EGC S+ + A V R + V Sbjct: 125 LEEHPPDVRQARQMAPFPLRVFINPTMRVLDSQVVSHPEGCRSVHGFSACVPRFLAVQVA 184 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + A G A +QHE+DHL GIL++D + Sbjct: 185 GLNEAGEESSWEACGWAARIVQHEMDHLQGILYVDRM 221 >gi|311067971|ref|YP_003972894.1| peptide deformylase [Bacillus atrophaeus 1942] gi|310868488|gb|ADP31963.1| peptide deformylase [Bacillus atrophaeus 1942] Length = 184 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 9/115 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----I 97 G+GLAA QI + R++ I +D + NPKII+ S + S EGCLS I Sbjct: 58 GVGLAAPQININKRMIAIHAEDASGTLYSYALFNPKIISHSVEKSYLTSGEGCLSVDEAI 117 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 P Y V R A I V+ + I G LA QHE+DHLNG++F DH+ + Sbjct: 118 PGY---VPRYARIRVKATTLEGEEIDIRLKGFLAIVFQHEIDHLNGVMFYDHIDK 169 >gi|237654289|ref|YP_002890603.1| peptide deformylase [Thauera sp. MZ1T] gi|237625536|gb|ACR02226.1| peptide deformylase [Thauera sp. MZ1T] Length = 174 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + L+ D L + + P+ + + + LI+++ + M + G+GLAA QIGV ++V Sbjct: 1 MAVRTLLRMGDARLLQPAAPVGEFGTPALAALIEDLFDTMAAHGGVGLAAPQIGVGLQVV 60 Query: 60 VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + + + +NP I+ +++ EGCLS+P R V R+ +RY Sbjct: 61 IFGFERSERYPDAAPVPRTILLNPVIVPLTEEREEGWEGCLSVPGLRGMVPRA--TRIRY 118 Query: 115 MDCNAQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + I +A+G A +QHE DHL G+L+ + +R T Sbjct: 119 TGYTPAGEPIERFAEGFHARVVQHECDHLAGVLYPMRVRDFRRFGFT 165 >gi|269796214|ref|YP_003315669.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM 10542] gi|269098399|gb|ACZ22835.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM 10542] Length = 211 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 11/155 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61 P+V P+LR+ + + D++ L+D+M M G+GLAA QIG+ ++ V+ Sbjct: 24 PIVQAGHPVLRQPAAAYDGQLGDLLPALLDSMRLTMVDAPGVGLAAPQIGIGLQIAVLHD 83 Query: 62 ----DLQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D +D R P+ V +NP D+ + EGCLS+ Y+A V R + + Sbjct: 84 AGSTDPEDPRER-TPLEHRVLVNPSYEGVGDEVRSFYEGCLSVEGYQAVVARHRTVRLTG 142 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 D + G A +QHE DHL G L+IDH Sbjct: 143 QDETGRALDEQLTGWPARIVQHETDHLRGQLYIDH 177 >gi|21282827|ref|NP_645915.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2] gi|49483378|ref|YP_040602.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252] gi|49486054|ref|YP_043275.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476] gi|257425268|ref|ZP_05601693.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427928|ref|ZP_05604326.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430561|ref|ZP_05606943.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433322|ref|ZP_05609680.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410] gi|257436164|ref|ZP_05612211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|282903768|ref|ZP_06311656.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|282905532|ref|ZP_06313387.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908508|ref|ZP_06316338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910787|ref|ZP_06318590.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913990|ref|ZP_06321777.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282918912|ref|ZP_06326647.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282924035|ref|ZP_06331711.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|283957956|ref|ZP_06375407.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501023|ref|ZP_06666874.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|293509982|ref|ZP_06668690.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|293526570|ref|ZP_06671255.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|295427700|ref|ZP_06820332.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297208141|ref|ZP_06924572.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297591341|ref|ZP_06949979.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|300912221|ref|ZP_07129664.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|38604914|sp|Q8NX19|DEFL_STAAW RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81649434|sp|Q6G9Z8|DEFL_STAAS RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81651281|sp|Q6GHM0|DEFL_STAAR RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|21204266|dbj|BAB94963.1| MW1098 [Staphylococcus aureus subsp. aureus MW2] gi|49241507|emb|CAG40193.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus MRSA252] gi|49244497|emb|CAG42926.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus MSSA476] gi|257271725|gb|EEV03863.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274769|gb|EEV06256.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278689|gb|EEV09308.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257281415|gb|EEV11552.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410] gi|257284446|gb|EEV14566.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|282314007|gb|EFB44399.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|282316722|gb|EFB47096.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282322058|gb|EFB52382.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282325392|gb|EFB55701.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327570|gb|EFB57853.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330824|gb|EFB60338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595386|gb|EFC00350.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|283470427|emb|CAQ49638.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ST398] gi|283790105|gb|EFC28922.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920642|gb|EFD97705.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|291096028|gb|EFE26289.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|291466926|gb|EFF09444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|295128058|gb|EFG57692.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887384|gb|EFH26286.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576227|gb|EFH94943.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|298694508|gb|ADI97730.1| probable peptide deformylase 1 [Staphylococcus aureus subsp. aureus ED133] gi|300886467|gb|EFK81669.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|312438408|gb|ADQ77479.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60] gi|315194101|gb|EFU24494.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus CGS00] Length = 162 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152 >gi|282916464|ref|ZP_06324226.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|283770276|ref|ZP_06343168.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] gi|282319904|gb|EFB50252.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|283460423|gb|EFC07513.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] Length = 162 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVARSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152 >gi|330994009|ref|ZP_08317939.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1] gi|329758955|gb|EGG75469.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1] Length = 180 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 11/162 (6%) Query: 12 PILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 P+L + +R + + + L+ +M+E M G GLAA Q+ RL V + Sbjct: 16 PVLLQPARAVTDPQAPALRTLVADMIETMLDAQGAGLAAPQVHHGLRLFVYQVPPGRSAG 75 Query: 71 N------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P INP + + EGCLSIP R V R + + Y N Q Q + Sbjct: 76 EDDPPCPPAALINPVLDPVDTEMVDRLEGCLSIPGMRGWVPR--YRRIAYRGINGQGQPV 133 Query: 125 Y--ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A G LA LQHE DHL+GIL+ + L R +M++ Sbjct: 134 HGVASGFLANVLQHEYDHLDGILYPMRMPDLGRMGFDSEMAR 175 >gi|291613763|ref|YP_003523920.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] gi|291583875|gb|ADE11533.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] Length = 177 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 9/129 (6%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKNPMVFINPK 79 ++ L+ +M E M + DG+GLAA QIGV R+V+ ++ + A V INP Sbjct: 26 TPELHALLKDMRETMLAMDGVGLAAPQIGVDLRVVIFEVNQNPRYPDAETVPQTVLINPV 85 Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII--YADGLLATCLQHE 137 + SD EGCLS+P R V R + +RY + +I G A +QHE Sbjct: 86 LTPLSDVMEEGWEGCLSVPGMRGLVPR--YTHLRYQGRDEYGALIDRTVSGFHARVVQHE 143 Query: 138 LDHLNGILF 146 DHL+GIL+ Sbjct: 144 CDHLDGILY 152 >gi|302523131|ref|ZP_07275473.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|302432026|gb|EFL03842.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 214 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 18/171 (10%) Query: 5 PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + P E + + L+ M M G+GLAA QIGV RL V Sbjct: 25 PIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAV-- 82 Query: 63 LQDHAHRKNPM------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 L+D A + V +NP + + + EGCLS+P ++A V R A + Sbjct: 83 LEDPATVPEEVRRVREREPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVV 142 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 +R D + G A +QHE DHL+G L++D L R + + + Sbjct: 143 RLRAEDEHGTALDEEVRGWPARIVQHETDHLDGTLYVDRA--LPRSLTSNE 191 >gi|81428697|ref|YP_395697.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K] gi|123728642|sp|Q38WP3|DEF_LACSS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78610339|emb|CAI55388.1| Formylmethionine deformylase (N-formylmethionylaminoacyl-tRNA deformylase) [Lactobacillus sakei subsp. sakei 23K] Length = 185 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 26/164 (15%) Query: 11 DPILRRVSRPIE--------KINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR +++P+ ++ +D+M ++N + + G+GLAA Q+ V + Sbjct: 12 NPTLREIAQPVSFPLSDEDRQLAADMMTFLENSQDPEIAAKYQLRAGVGLAAPQVDVSKQ 71 Query: 58 LVVIDLQDHAHRKNPM---VFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSA 108 + + L + P+ V INPKII+ S D EGCLS+ P Y V R Sbjct: 72 MSAV-LVPGPEGEAPILKDVIINPKIISHSVQDAALAEGEGCLSVDREVPGY---VPRHD 127 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT+RY D I A QHE+DHLNGILF DH+++ Sbjct: 128 RITLRYQDVEGVSHKIRLKNYPAIVCQHEIDHLNGILFFDHINK 171 >gi|15924205|ref|NP_371739.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926798|ref|NP_374331.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315] gi|57651784|ref|YP_186090.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|87161304|ref|YP_493805.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194921|ref|YP_499721.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267706|ref|YP_001246649.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9] gi|150393764|ref|YP_001316439.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1] gi|151221337|ref|YP_001332159.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979536|ref|YP_001441795.1| hypothetical protein SAHV_1205 [Staphylococcus aureus subsp. aureus Mu3] gi|161509387|ref|YP_001575046.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142005|ref|ZP_03566498.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315573|ref|ZP_04838786.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006002|ref|ZP_05144603.2| polypeptide deformylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795729|ref|ZP_05644708.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|258415953|ref|ZP_05682223.1| peptide deformylase [Staphylococcus aureus A9763] gi|258419700|ref|ZP_05682667.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|258444552|ref|ZP_05692881.1| formylmethionine deformylase [Staphylococcus aureus A8115] gi|258447615|ref|ZP_05695759.1| polypeptide deformylase [Staphylococcus aureus A6300] gi|258449457|ref|ZP_05697560.1| polypeptide deformylase 1 [Staphylococcus aureus A6224] gi|258452512|ref|ZP_05700518.1| polypeptide deformylase 1 [Staphylococcus aureus A5948] gi|258454836|ref|ZP_05702800.1| polypeptide deformylase 1 [Staphylococcus aureus A5937] gi|262048116|ref|ZP_06021003.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30] gi|262051848|ref|ZP_06024064.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3] gi|269202830|ref|YP_003282099.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|282892701|ref|ZP_06300936.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|282919997|ref|ZP_06327726.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|282927555|ref|ZP_06335171.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|284024139|ref|ZP_06378537.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132] gi|294848208|ref|ZP_06788955.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|295407153|ref|ZP_06816954.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|296275236|ref|ZP_06857743.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1] gi|297245961|ref|ZP_06929820.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|304381222|ref|ZP_07363875.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54036958|sp|P63922|DEFL_STAAN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|54040934|sp|P63921|DEFL_STAAM RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81694664|sp|Q5HGL7|DEFL_STAAC RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|13701015|dbj|BAB42310.1| SA1058 [Staphylococcus aureus subsp. aureus N315] gi|14246985|dbj|BAB57377.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus Mu50] gi|57285970|gb|AAW38064.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|87127278|gb|ABD21792.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202479|gb|ABD30289.1| polypeptide deformylase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740775|gb|ABQ49073.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9] gi|149946216|gb|ABR52152.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus JH1] gi|150374137|dbj|BAF67397.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str. Newman] gi|156721671|dbj|BAF78088.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368196|gb|ABX29167.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789701|gb|EEV28041.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|257839289|gb|EEV63763.1| peptide deformylase [Staphylococcus aureus A9763] gi|257844285|gb|EEV68667.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|257850045|gb|EEV73998.1| formylmethionine deformylase [Staphylococcus aureus A8115] gi|257853806|gb|EEV76765.1| polypeptide deformylase [Staphylococcus aureus A6300] gi|257857445|gb|EEV80343.1| polypeptide deformylase 1 [Staphylococcus aureus A6224] gi|257859730|gb|EEV82572.1| polypeptide deformylase 1 [Staphylococcus aureus A5948] gi|257863219|gb|EEV85983.1| polypeptide deformylase 1 [Staphylococcus aureus A5937] gi|259160249|gb|EEW45277.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3] gi|259163682|gb|EEW48237.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30] gi|262075120|gb|ACY11093.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|269940707|emb|CBI49088.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus TW20] gi|282590558|gb|EFB95635.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|282594713|gb|EFB99697.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|282764698|gb|EFC04823.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|285816897|gb|ADC37384.1| Peptide deformylase [Staphylococcus aureus 04-02981] gi|294825008|gb|EFG41430.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|294968006|gb|EFG44034.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|297177125|gb|EFH36379.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|302751038|gb|ADL65215.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340205|gb|EFM06146.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829609|emb|CBX34451.1| polypeptide deformylase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131006|gb|EFT86990.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus CGS03] gi|315198452|gb|EFU28781.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus CGS01] gi|320140970|gb|EFW32817.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144315|gb|EFW36081.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313884|gb|AEB88297.1| Peptide deformylase-like protein [Staphylococcus aureus subsp. aureus T0131] gi|329724773|gb|EGG61278.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189] gi|329727640|gb|EGG64096.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172] Length = 162 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ ++ + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152 >gi|254818949|ref|ZP_05223950.1| peptide deformylase [Mycobacterium intracellulare ATCC 13950] Length = 197 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++P+ + +++ LI ++ + M + G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTKPVPVAADGSLPAELPALIADLYDTMDAAHGVGLAANQIGVG 60 Query: 56 YRLVVIDLQDHAHRKNPM--VFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D R V +NP + T D EGCLS+P R+ Sbjct: 61 LRVFVYDCADERGRTERRRGVVVNPVLETSEVPETMPDPDNDDEGCLSVPGESFPTGRAK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + + + L A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGNPVALEGNDLFARMLQHETGHLDGFLYLDRL 162 >gi|331017341|gb|EGH97397.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 179 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 8/150 (5%) Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65 L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +LV+ + Sbjct: 13 LLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSERYP 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A + +NP I EGCLS+P R V R I D + Q Sbjct: 73 QAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGQPIERI 132 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A +QHE DHL G L+ ++ + Sbjct: 133 AHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|153952996|ref|YP_001393761.1| Def1 [Clostridium kluyveri DSM 555] gi|219853653|ref|YP_002470775.1| hypothetical protein CKR_0310 [Clostridium kluyveri NBRC 12016] gi|146345877|gb|EDK32413.1| Def1 [Clostridium kluyveri DSM 555] gi|219567377|dbj|BAH05361.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 161 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 14/139 (10%) Query: 14 LRRVSRPIEK-----INSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHA 67 L R S P+E+ I I NL D +++ + G +AA QIGV RL+ + + + Sbjct: 13 LYRKSSPVEEKDIDLIKQTISNLHDTLIDFRKKYNAGRAIAAPQIGVFKRLIYMYIDE-- 70 Query: 68 HRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 P++FINP I+TF + + + C+S PD VKR TV Y D N + I Sbjct: 71 ----PLIFINP-ILTFPNKEMMEVMDDCMSFPDLLVKVKRFKNCTVTYKDMNFKENSIKF 125 Query: 127 DGLLATCLQHELDHLNGIL 145 +G L+ +QHE DHL+GIL Sbjct: 126 EGDLSELIQHEYDHLDGIL 144 >gi|83592380|ref|YP_426132.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170] gi|83575294|gb|ABC21845.1| Peptide deformylase [Rhodospirillum rubrum ATCC 11170] Length = 169 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 6/141 (4%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----DLQDH 66 P+L ++RP+E + I L+ +M+E + + G+GLAA Q+ V R+++ + Sbjct: 2 PVLAGIARPVEDPTDPKIHRLVADMIETLADSGGVGLAAPQVHVPLRVMIFHVPANRSTE 61 Query: 67 AHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A P+ V INP++ ++ EGCLS+P V R + R +D + + Sbjct: 62 AEGAVPLTVLINPQLTPLGEEMVEDWEGCLSLPGLTGLVPRYRSLRYRGVDLDGREVERE 121 Query: 126 ADGLLATCLQHELDHLNGILF 146 A A +QHE DHL+G+L+ Sbjct: 122 ARDFHARVVQHEYDHLDGVLY 142 >gi|297583895|ref|YP_003699675.1| peptide deformylase [Bacillus selenitireducens MLS10] gi|297142352|gb|ADH99109.1| peptide deformylase [Bacillus selenitireducens MLS10] Length = 194 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 4/153 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60 ++KP P P+ + +E + + N D Y G+GLAA QI V + V Sbjct: 15 LRKPAEEVPVPLSEEDRQTLEDMMQFLRNSQDPETAETYGLRPGVGLAAPQINVSKNMFV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDC 117 + + M F+NPKII+ S + + EGCLS+ V R + + V D Sbjct: 75 VRFAEEDEEPIEMTFVNPKIISHSAETTHLPDGEGCLSVDRSVEGTVPRYSRVKVEATDE 134 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 N I G A QHE DHLNGI+F D + Sbjct: 135 NGHSFTIRLRGFFAIVFQHEFDHLNGIMFYDRI 167 >gi|28868804|ref|NP_791423.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213969590|ref|ZP_03397726.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] gi|301383364|ref|ZP_07231782.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13] gi|302058804|ref|ZP_07250345.1| peptide deformylase [Pseudomonas syringae pv. tomato K40] gi|302134493|ref|ZP_07260483.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|32363152|sp|Q886I1|DEF2_PSESM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|28852043|gb|AAO55118.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213925686|gb|EEB59245.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] Length = 179 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 8/150 (5%) Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65 L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +LV+ + Sbjct: 13 LLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSERYP 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A + +NP I EGCLS+P R V R I D + Q Sbjct: 73 QAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGQPIERI 132 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A +QHE DHL G L+ ++ + Sbjct: 133 AHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|330967399|gb|EGH67659.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 179 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 8/150 (5%) Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65 L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +LV+ + Sbjct: 13 LLRIAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSERYP 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A + +NP I EGCLS+P R V R I D + Q Sbjct: 73 QAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGQPIERI 132 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A +QHE DHL G L+ ++ + Sbjct: 133 AHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|320527454|ref|ZP_08028635.1| peptide deformylase [Solobacterium moorei F0204] gi|320132167|gb|EFW24716.1| peptide deformylase [Solobacterium moorei F0204] Length = 195 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 27/166 (16%) Query: 11 DPILRR----VSRPIEKINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGV 54 +P++R VS P+ K + L+ +ML+ V STD +G++A+Q+G+ Sbjct: 20 NPLIREKSELVSLPLSKEDE---TLLRDMLQYVKDSTDEEKATKLNLRPAVGISAIQVGI 76 Query: 55 LYRLVVIDL----QDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRS 107 R+ + +D K + +NPKI++ S + + EGCLS+ ++R V R+ Sbjct: 77 KKRMCAVAFDETDKDGNMVKYEFMLVNPKIVSRSVQPAYLESGEGCLSVENEHRGYVVRN 136 Query: 108 AFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 A +T+R D + I A G +A LQHELDH++GILF DH+++ Sbjct: 137 ARVTIRAFDLVQNQDVEIRARGYIAIVLQHELDHMDGILFYDHINK 182 >gi|227509423|ref|ZP_03939472.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191135|gb|EEI71202.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 188 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 24/170 (14%) Query: 11 DPILRRVSRPIE--------KINSDIMNLID-----NMLEVMYSTDGIGLAAVQIGV--L 55 DP+LR+ ++ ++ K+ D+M ++ + E G+GLAA Q+GV + Sbjct: 12 DPVLRQEAKKVKFPLSADDKKLAHDLMEYLEVSQNPELCEKYKLRAGVGLAAPQVGVSKM 71 Query: 56 YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAF 109 V++ D + P+ V INP I++ S EG CLS+ D V RSA Sbjct: 72 MASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGYVPRSAR 131 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156 IT++Y D + I A QHE+DHL+GILF DH+++ KRD Sbjct: 132 ITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181 >gi|167563193|ref|ZP_02356109.1| peptide deformylase [Burkholderia oklahomensis EO147] Length = 177 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 6/139 (4%) Query: 14 LRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKN 71 L V++P+E N+ ++ L+ +M E M+ +G GLAA Q+GV ++++ + + Sbjct: 13 LLEVAKPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVIIFGFGSSERYPEA 72 Query: 72 P----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P V +NP + D EGCLS+P R V R + D + A+ Sbjct: 73 PPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQFGEKLERVAE 132 Query: 128 GLLATCLQHELDHLNGILF 146 G A +QHE DHL G L+ Sbjct: 133 GFHARVVQHEYDHLIGKLY 151 >gi|300770446|ref|ZP_07080325.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] gi|300762922|gb|EFK59739.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] Length = 430 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 13/131 (9%) Query: 31 LIDNMLEVMYST------DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF-INPKIITF 83 L+D + + MY+T G+G+AA Q+G+ I +Q + P F +NPKII Sbjct: 280 LLDLLSQRMYATVNDPDHSGVGIAAPQVGI--NKNAIWVQRFDKKDTPFEFYVNPKIIWR 337 Query: 84 SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--DGLLATCLQHELDHL 141 S EGCLSIP + DV RS I ++Y+ N II +G A QHE+DHL Sbjct: 338 SKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYV--NKTGDIIEENIEGFTAVIFQHEVDHL 395 Query: 142 NGILFIDHLSR 152 GILF D L Sbjct: 396 YGILFTDRLEE 406 >gi|224476206|ref|YP_002633812.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420813|emb|CAL27627.1| type II peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] Length = 184 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 17/158 (10%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRL 58 P LR ++ +E ++++ N I M E + ++ G+G+AA Q+ + R+ Sbjct: 13 PTLREKAKEVEFPLSNEDRNKIQEMHEFLVNSQDDEIAKKYGLRSGVGIAAPQLNISKRM 72 Query: 59 VVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PDYRADVKRSAFITVRY 114 + + L D K+ ++ INPKI+++S + + EGCLS+ D V R +TV+ Sbjct: 73 LAVHLPDDGEGKSYELMLINPKIVSYSVQEAYLPTGEGCLSVDEDIPGLVHRHNRVTVKA 132 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D + + G +A +QHE+DHL+GI+F DH+ + Sbjct: 133 KDIDGNDINLRLKGYIAIVVQHEIDHLDGIMFYDHIDK 170 >gi|170050375|ref|XP_001861255.1| peptide deformylase, mitochondrial [Culex quinquefasciatus] gi|167872016|gb|EDS35399.1| peptide deformylase, mitochondrial [Culex quinquefasciatus] Length = 236 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 25/167 (14%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 DP+LR+ ++ P E + S ++ L+ M++VM +GLAA QIG+ R++V++ +D Sbjct: 45 DPVLRQKAQLVPPEAVTSPEVRFLVQAMIDVMRKYSCVGLAAPQIGISLRILVMEFKDKL 104 Query: 67 ------AHRK------------NP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 A K P +V INP++ + + + E C S+ + A+V Sbjct: 105 RDEYTSAEYKIKEMDTLPLTVGRPTFMVVLINPELKVTNYEKKSFTEACASVKGFSAEVP 164 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R + + + +D N + + + G A QHE+DHL+G+++ D + R Sbjct: 165 RYSEVLLSGLDENGKSKELTLKGWNARIAQHEMDHLDGVIYTDVMDR 211 >gi|169350936|ref|ZP_02867874.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552] gi|169291998|gb|EDS74131.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552] Length = 189 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 9/118 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQ--EGCLS 96 +G+AA+Q+G+ R+ I + D+ + N + +NPKI++++ S + EGCLS Sbjct: 58 AVGIAAIQLGIPKRMCAIHVLDYDSKGNVVKANDYALVNPKIVSYTQKNSFLRDGEGCLS 117 Query: 97 I-PDYRADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 + + + V R A +TV D ++ I A G L+ CLQHELDH G LF D +++ Sbjct: 118 VNKEVQGYVPRHAKVTVEGYDLLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINK 175 >gi|329769034|ref|ZP_08260456.1| peptide deformylase 2 [Gemella sanguinis M325] gi|328839525|gb|EGF89101.1| peptide deformylase 2 [Gemella sanguinis M325] Length = 184 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 18/170 (10%) Query: 1 MVKKPLVIFPDPILRR----VSRPIEKINSDIMNLI---------DNMLEVMYSTDGIGL 47 + K ++I P LR+ V PI + +I+ + D E + GIGL Sbjct: 2 ITTKDIIIDPHETLRKRAEEVKSPISDEDKEILRSLLEYVIASQDDEKAEELGLKPGIGL 61 Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPMVFI--NPKIITFSDD--FSVYQEGCLSIPDYRAD 103 AA QI V R++ + + D + + + + NPKII+ S + EGCLS+ + + Sbjct: 62 AAPQINVSKRMIAVHIPDEENPEYTVSYALYNPKIISNSAAKCYLAGGEGCLSVEEEKKG 121 Query: 104 -VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R + I V D N + + L A C QHE+DHLNGI+F DH+++ Sbjct: 122 YVPRYSKIKVIGYDENDEKVTLVLTDLPAICFQHEIDHLNGIMFYDHINK 171 >gi|332830436|gb|EGK03064.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286] Length = 189 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 18/138 (13%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGV---LYRLVVIDLQDHAHRKNPMVFINPKII 81 + D + I + + G+G+AA Q+GV L+ ID D A V INP+I+ Sbjct: 47 DKDWQHFIQRLKLTLAVESGVGIAAPQVGVGRNLFLFTRIDRPDKA----IQVAINPRIV 102 Query: 82 TFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY--------ADGLLAT 132 SD+ ++ +GCLS+PD KR A+I V Y N + ++I Sbjct: 103 NHSDETICFEGDGCLSVPDLSGSTKRYAWIDVEYY--NEKGELIKERLSGQSRGSDFTGI 160 Query: 133 CLQHELDHLNGILFIDHL 150 QHE DHL GILFID L Sbjct: 161 IFQHEFDHLQGILFIDRL 178 >gi|145491449|ref|XP_001431724.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398829|emb|CAK64326.1| unnamed protein product [Paramecium tetraurelia] Length = 180 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 7/113 (6%) Query: 39 MYSTDGIGLAAVQIGVLYRL-VVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQE 92 ++S + + LAA Q+G RL V DL+ +K V++NP+II S+D V +E Sbjct: 53 LHSIEALALAAPQVGWEKRLFVCADLELQQRKKAKYIQKVDVYLNPEIIKKSNDLIVSKE 112 Query: 93 GCLSIPDYR-ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 CLSIP + A V RS IT++Y + ++ A+GL A QHE+DHL+GI Sbjct: 113 NCLSIPPNQIACVMRSNKITMKYYNLLGIEMVVEAEGLQACIYQHEIDHLDGI 165 >gi|77024073|gb|ABA55507.1| chloroplast peptide deformylase [Isochrysis galbana] Length = 200 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 1/107 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P P+LR + + + + L M +MY++ G+GLAA Q+G+ RL+V + + Sbjct: 89 YPHPLLRAPNSEVVSFDDSLRKLTREMFAIMYASRGVGLAAPQLGINKRLMVFNPEGKKE 148 Query: 69 RK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + +V NP+I+ +EGCLS P + ADV R+ +I V + Sbjct: 149 KWMSEVVLCNPRIVERGAGKETDEEGCLSFPGFTADVDRAGWIQVEF 195 >gi|218283087|ref|ZP_03489182.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989] gi|218216156|gb|EEC89694.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989] Length = 186 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 9/113 (7%) Query: 44 GIGLAAVQIGVLYRL--VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP- 98 +G+AAVQ+GVL ++ VVI +D + + +NPKII+ S + + EGCLS+ Sbjct: 62 AVGIAAVQVGVLKQMIAVVIPYEDGV---DEVALVNPKIISESVQNAYLDNGEGCLSVKG 118 Query: 99 DYRADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ V R A I VR D ++ I A+G A CLQHE+DHL+G LF DH+ Sbjct: 119 EHPGHVFRHARIKVRGYDLIQDKNVTISAEGYFAICLQHEIDHLSGTLFYDHI 171 >gi|325923638|ref|ZP_08185267.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] gi|325545882|gb|EGD17107.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] Length = 171 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68 D L RV+ P+ + S ++ L+ +M E M G+GLAA QI V +L+V + + Sbjct: 10 DKRLLRVAPPVTNLGSAELRTLVADMFETMDDARGVGLAAPQIAVDLQLMVFGFEASERY 69 Query: 69 RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V N +I S++ EGCLSIP RA + R FI R + Sbjct: 70 PEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGSPIER 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 EAEGFHARVVQHEYDHLVGRLY 151 >gi|237798881|ref|ZP_04587342.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021735|gb|EGI01792.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 179 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 8/150 (5%) Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65 L RV+ P+ +S++ LI +M E M+S G+GLAA QIG+ +LV+ + Sbjct: 13 LLRVAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSERYP 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A + +NP I + EGCLS+P R V R I D + Sbjct: 73 EAEAVPQTILLNPLITPLGPNMEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGLPIERV 132 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A +QHE DHL G L+ ++ + Sbjct: 133 AHGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|82701784|ref|YP_411350.1| peptide deformylase [Nitrosospira multiformis ATCC 25196] gi|82409849|gb|ABB73958.1| Peptide deformylase [Nitrosospira multiformis ATCC 25196] Length = 177 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ DP L V+R +E ++ + L+ +M + M + +G GLAA QIG+ ++V Sbjct: 1 MPIKPVLKMGDPRLLEVARKVENFSTPEFGALLRDMHDTMEALEGAGLAAPQIGIDLQVV 60 Query: 60 VIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + ++ + A V +NP + ++ EGCLS+P R V R A I Sbjct: 61 IFGVKRNLRYPDAEEVPYTVLVNPVLTPLTEYMEQDWEGCLSVPGMRGMVPRYARIRYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 D +G A +QHE DHL GIL+ Sbjct: 121 SDQYGNRIDRTVEGFHARVVQHECDHLQGILY 152 >gi|294498110|ref|YP_003561810.1| peptide deformylase [Bacillus megaterium QM B1551] gi|295703459|ref|YP_003596534.1| peptide deformylase [Bacillus megaterium DSM 319] gi|294348047|gb|ADE68376.1| peptide deformylase [Bacillus megaterium QM B1551] gi|294801118|gb|ADF38184.1| peptide deformylase [Bacillus megaterium DSM 319] Length = 184 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 16/157 (10%) Query: 12 PILRRVSR--PIEKINSD----------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRL 58 P LR V++ P+ D + N D + Y GIGLAA QI V R+ Sbjct: 13 PTLREVAKEVPLPASEEDKKILHSLLEYVKNSQDPEIAAKYGLRSGIGLAAPQINVSKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI-PDYRADVKRSAFITVRYM 115 + + + D + NPKII+ S + EGCLS+ D V R A ITV+ Sbjct: 73 IGVHVTDEKGKLYSYALFNPKIISHSVEKTYLTGGEGCLSVDQDIPGFVPRYARITVKGT 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I GL A QHE+DHL+GI+F D++++ Sbjct: 133 TLEGEEVKIRLKGLPAVVFQHEIDHLDGIMFYDYINK 169 >gi|312865443|ref|ZP_07725670.1| peptide deformylase [Streptococcus downei F0415] gi|311098961|gb|EFQ57178.1| peptide deformylase [Streptococcus downei F0415] Length = 204 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 31/170 (18%) Query: 11 DPILRRVSRPIEKINSD--------IMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57 +P LR V++ +E SD +M + N M E M G+GLAA Q+ + R Sbjct: 24 NPTLREVAKDVELPLSDEDIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQLDISKR 83 Query: 58 LVVIDLQDHAHRK-NP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRA 102 ++ + + + ++ NP V NP+I++ S D EGCLS+ P Y Sbjct: 84 IIAVLVPNPEDKEGNPPAQPYSMQEVMYNPRIVSHSVQDAALADGEGCLSVDREVPGY-- 141 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R + +TV Y+D N Q I G + +QHE+DH NGI+F DH++ Sbjct: 142 -VVRHSRVTVEYVDKNGDKQKIKLRGYNSMVVQHEIDHTNGIMFYDHINE 190 >gi|119713702|gb|ABL97752.1| peptide deformylase [uncultured marine bacterium EB0_41B09] Length = 163 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 6/150 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 +PIL + + +EK ++ +I LI +M++ M G GLAA Q+G +LV+ + + Sbjct: 3 NPILLKEAEKVEKFDTPEIHELIKDMIKTMKDAQGAGLAAPQVGESIQLVIFGVDKNERY 62 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A V INP I + + EGCLS+P R V R I + D Sbjct: 63 PEAEEVPFTVLINPVITPLNQEKEDDWEGCLSVPGMRGVVPRYKTINYKGFDQYGNEIDR 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLK 154 +G A +QHE DHL GIL+ + +K Sbjct: 123 DVEGFHARVVQHECDHLFGILYPSRIEDMK 152 >gi|256831860|ref|YP_003160587.1| Peptide deformylase [Jonesia denitrificans DSM 20603] gi|256685391|gb|ACV08284.1| Peptide deformylase [Jonesia denitrificans DSM 20603] Length = 245 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 75/161 (46%), Gaps = 11/161 (6%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 PLV P+LRR + E ++ +D M ID M M G+GLAA Q+GV + V+ Sbjct: 51 PLVHAGHPVLRREAGRYEGQLGADFMAFIDAMNTTMVVAPGVGLAAPQVGVSLAVAVMRD 110 Query: 64 QDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A +P V +NP D+ + EGCLS+P Y+A V R + V Sbjct: 111 PGAADDADPRERVAFPMRVLVNPVYEPVGDEKVSFFEGCLSVPGYQAVVARWRRVRVMGW 170 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFID--HLSRLK 154 D G A QHE+DHL G+L++D HL L Sbjct: 171 DETGAPVDEVLTGWPARIAQHEIDHLRGVLYVDRAHLRSLS 211 >gi|38049247|gb|AAR10418.1| putative peptide deformylase [Enterococcus faecium] Length = 160 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 5/113 (4%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY---QEGCLSIP-D 99 G+GL+A QIG+ R+ V L D +K+ INPKII+ S +Y EGCLS+ D Sbjct: 35 GVGLSANQIGLNKRMFVAYLTDEKGKKHEYTLINPKIISHSVSM-IYLSPSEGCLSVDRD 93 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R I V+ + + ++ G + +QHE+DHLNGI+F + +++ Sbjct: 94 IKGFVPRYERIKVKGFNLEGEEIVLKLKGYSSIVIQHEIDHLNGIMFYERINK 146 >gi|258438742|ref|ZP_05689895.1| formylmethionine deformylase [Staphylococcus aureus A9299] gi|257848001|gb|EEV71994.1| formylmethionine deformylase [Staphylococcus aureus A9299] Length = 162 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ ++ + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVIRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152 >gi|23098865|ref|NP_692331.1| peptide deformylase [Oceanobacillus iheyensis HTE831] gi|32363150|sp|Q8ER96|DEF_OCEIH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22777092|dbj|BAC13366.1| formylmethionine deformylase [Oceanobacillus iheyensis HTE831] Length = 183 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 16/156 (10%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58 P L R + +E ++ D L+++M++ + ++ G+G+AA Q+G+ ++ Sbjct: 13 PSLTRSAAVVEVPLSKDDKQLLEDMMQFLKNSQDEEIAEKYELRAGVGIAAPQLGIEKQI 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRYM 115 + I +D + M +NPKII+ S + S EGCLS+ V R A IT++ Sbjct: 73 IAIHFEDIDGKLYSMGLVNPKIISHSVEQSYLSSGEGCLSVDRPVEGYVPRHARITIKAT 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D N Q + G A QHE+DH+NGI+F D ++ Sbjct: 133 DINDQPVKLRLKGYPAIVFQHEIDHINGIMFFDRIN 168 >gi|82750819|ref|YP_416560.1| peptide deformylase [Staphylococcus aureus RF122] gi|82656350|emb|CAI80768.1| probable peptide deformylase 1 [Staphylococcus aureus RF122] gi|323440990|gb|EGA98697.1| peptide deformylase [Staphylococcus aureus O11] gi|323442306|gb|EGA99936.1| peptide deformylase [Staphylococcus aureus O46] Length = 162 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + +NPKII S++ EG +++PD +V RS I V D N Sbjct: 61 IDME----MEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152 >gi|167756524|ref|ZP_02428651.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402] gi|167702699|gb|EDS17278.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402] Length = 189 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 9/118 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQ--EGCLS 96 +G+AA+Q+G+ R+ I + D N + +NPKII+ ++ S + EGCLS Sbjct: 58 AVGIAAIQLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLS 117 Query: 97 IPDY-RADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 + D + V R A +TV+ D ++ I A G L+ CLQHELDH G LF D +++ Sbjct: 118 VNDEVQGYVPRYAKVTVKGYDVLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINK 175 >gi|293400829|ref|ZP_06644974.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305855|gb|EFE47099.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 185 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 17/158 (10%) Query: 11 DPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTD-----------GIGLAAVQIGVLYR 57 DPI+R V+ PI D L+D + V S D +G+AA+Q+G+ + Sbjct: 13 DPIVREKSVTVPIPMHEEDKELLMDMLQYVRDSQDSELAEKQNLRPAVGIAAIQLGIPKK 72 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAFITVRY 114 ++ + + NPKII+ S + + EGCLS+ + + V R+A I V+ Sbjct: 73 MLAVVVPKDEEEDYEFALANPKIISESIQKAYLKNGEGCLSVEEEHEGIVPRAARIKVKG 132 Query: 115 MDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 D +I I A G LA LQHE+DH NG LF DH++ Sbjct: 133 FDLLRNEEIVISASGYLAIVLQHEMDHFNGTLFYDHIN 170 >gi|253577418|ref|ZP_04854734.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843218|gb|EES71250.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] Length = 193 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 DPILR V+ P+ + + ML+ + ++ G+GL+A QIG+ R Sbjct: 20 DPILRVVTEPVSIPPTEEDREEMAAMLQFLKNSQDPEMSKKYKLRAGVGLSANQIGLNKR 79 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIP-DYRADVKRSAFITVRY 114 + L D + P+ NPKII+ S + EGCLS+ + V R + V+ Sbjct: 80 MFAALLMDENGKDRPLALYNPKIISHSQAMTYLPESEGCLSVDRTVQGFVPRYEKVQVKA 139 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + G A +QHE+DHLNGI+F DH++ Sbjct: 140 YDDEGNEIKLRFKGFDAIVMQHEIDHLNGIMFYDHIN 176 >gi|237745527|ref|ZP_04576007.1| peptide deformylase [Oxalobacter formigenes HOxBLS] gi|229376878|gb|EEO26969.1| peptide deformylase [Oxalobacter formigenes HOxBLS] Length = 174 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 6/139 (4%) Query: 14 LRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKN 71 L R S P+ + N+ ++ L+ +M E M + G GLAA QIGVL R+V+ +++ + + Sbjct: 14 LLRESEPVREFNTPELDELVSDMFETMQAAQGAGLAAPQIGVLKRVVIFGYDENNRYPEA 73 Query: 72 P----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P V INP I +D+ EGCLSIP R V R A I D + A+ Sbjct: 74 PPVPETVLINPVIRPLTDEIDEGWEGCLSIPGMRGVVPRWARIHYEGFDQFGKRISRDAE 133 Query: 128 GLLATCLQHELDHLNGILF 146 G A +QHE DHL+GIL+ Sbjct: 134 GFHARVVQHECDHLDGILY 152 >gi|331701103|ref|YP_004398062.1| peptide deformylase [Lactobacillus buchneri NRRL B-30929] gi|329128446|gb|AEB72999.1| Peptide deformylase [Lactobacillus buchneri NRRL B-30929] Length = 188 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 27/166 (16%) Query: 11 DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTD---------GIGLAAVQIGV--L 55 DP+LR+ ++ P+ K + + + + LEV + G+GLAA Q+GV + Sbjct: 12 DPVLRKQAQKVKFPLSKEDKQLAHDLMEYLEVSQDPEQCEKLGLRAGVGLAAPQVGVSEM 71 Query: 56 YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLS----IPDYRADVKR 106 V++ +D + P+ V INP I++ S EG CLS IP Y V R Sbjct: 72 MASVLVPSEDEDEKDEPVFKDVIINPVIVSNSVQRGALTEGEGCLSVDKDIPGY---VPR 128 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +A IT++Y D + + + A QHE+DHL+G LF DH+++ Sbjct: 129 AARITLKYQDVDGKEHKVRLKNYPAIVCQHEIDHLHGTLFYDHINK 174 >gi|91775819|ref|YP_545575.1| peptide deformylase [Methylobacillus flagellatus KT] gi|91709806|gb|ABE49734.1| Peptide deformylase [Methylobacillus flagellatus KT] Length = 177 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ +P+L + + P+++ ++ ++ LI +M + M +G G+AA QIGV R+V Sbjct: 1 MPVKPVLKMGEPLLLQKAEPVQQFDTPELHALIKDMEDTMAHLNGAGIAAPQIGVSLRVV 60 Query: 60 VIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + + A + V +NP + ++ EGCLS+P R V R + Sbjct: 61 IFGVGHNPRYPDAEQVPYTVLVNPTLTPIGEELEDGWEGCLSVPGMRGIVPRYQRLHYTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 D G A +QHE DHL+GIL+ Sbjct: 121 YDQYGNPIDRLVSGFHARVVQHECDHLDGILY 152 >gi|307822304|ref|ZP_07652536.1| peptide deformylase [Methylobacter tundripaludum SV96] gi|307736870|gb|EFO07715.1| peptide deformylase [Methylobacter tundripaludum SV96] Length = 178 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 6/145 (4%) Query: 13 ILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-----H 66 +LR+ + + ++ +I +I+ M + +T G+G+AA QI L ++++I + Sbjct: 14 VLRQKAEAVADVHDVEIRQIIEAMQSTLATTSGVGIAAPQISKLKQIIIIASRPTPRYPS 73 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 A P V INP S+ EGCLS+P RA V R I + Y D Sbjct: 74 APLMEPTVMINPCFEVLSEAQEKGWEGCLSVPGIRALVPRYQEIMIHYTDQQGGLVESKL 133 Query: 127 DGLLATCLQHELDHLNGILFIDHLS 151 G +A QHE+DHL G ++D + Sbjct: 134 SGFVARIFQHEVDHLEGKTYLDRVE 158 >gi|253581454|ref|ZP_04858679.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725] gi|251836524|gb|EES65059.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725] Length = 161 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 14/151 (9%) Query: 2 VKKPLVIFPDPILRRVSRP-----IEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55 +KK +++ + L ++S P IE I + NL D +L+ G +AA QIGV Sbjct: 1 MKKEILLLGNEELYQISEPLKKDEIENIKFIVQNLHDTLLDFREKYHAGRAIAAPQIGVK 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRY 114 RL+ + + P++FINP ++ F DD + C+S P+ VKR ++Y Sbjct: 61 KRLLYMFID------KPVIFINP-VLEFPDDEMMEVLDDCMSFPNLLVKVKRYKRCRIKY 113 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +D + + Q + +G LA LQHE DHL+GIL Sbjct: 114 LDMDWKEQEMSLEGDLAELLQHEYDHLDGIL 144 >gi|237733122|ref|ZP_04563603.1| polypeptide deformylase [Mollicutes bacterium D7] gi|229383804|gb|EEO33895.1| polypeptide deformylase [Coprobacillus sp. D7] Length = 186 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 9/118 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQ--EGCLS 96 +G+AA+Q+G+ R+ I + D N + +NPKII+ ++ S + EGCLS Sbjct: 55 AVGIAAIQLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLS 114 Query: 97 IPDY-RADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 + D + V R A +TV+ D ++ I A G L+ CLQHELDH G LF D +++ Sbjct: 115 VNDEVQGYVPRYAKVTVKGYDILTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINK 172 >gi|302332819|gb|ADL23012.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus JKD6159] Length = 162 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + +NPKII S++ EG +++PD +V RS I V D N Sbjct: 61 IDME----MEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D +NGI F + R+ Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149 >gi|242242497|ref|ZP_04796942.1| possible peptide deformylase [Staphylococcus epidermidis W23144] gi|242234071|gb|EES36383.1| possible peptide deformylase [Staphylococcus epidermidis W23144] Length = 162 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL ++ +P+ + + L++++ + +Y + ++A QIGV + + Sbjct: 1 MTVKKLVKSTHPILNKMIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++ + INP + + S + EG +S+P +VKRS ITV+ D N Sbjct: 61 IDME----QEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + A +A + H +DHLNGI F Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQF 142 >gi|209736128|gb|ACI68933.1| Peptide deformylase, mitochondrial precursor [Salmo salar] Length = 249 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 +P+LR + ++ + +I M++VM + +GL+A Q+GV R++ ++ + Sbjct: 78 EPVLRAQAAAVDPGAVQGPAVQEVIHTMVKVMRKFECVGLSAPQVGVPLRILALEFPERM 137 Query: 67 ------AHRKN------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A R+ P+ +FINP++ ++QE C SI + A V R + V Sbjct: 138 LEDSLPAAREARGLTAVPLRIFINPQLRVLDGRTVLFQEACESISGFSATVPRYLSVEVS 197 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ A+ G A LQHE+DHL+G+L+ID + Sbjct: 198 GLNEKAEPVTWQVSGWPARILQHEMDHLDGVLYIDRM 234 >gi|27467808|ref|NP_764445.1| putative polypeptide deformylase [Staphylococcus epidermidis ATCC 12228] gi|57866753|ref|YP_188364.1| polypeptide deformylase [Staphylococcus epidermidis RP62A] gi|251810645|ref|ZP_04825118.1| possible peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|282876353|ref|ZP_06285220.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|39931130|sp|Q8CPI9|DEFL_STAES RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81674925|sp|Q5HPX6|DEFL_STAEQ RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|27315352|gb|AAO04487.1|AE016746_277 putative polypeptide deformylase [Staphylococcus epidermidis ATCC 12228] gi|57637411|gb|AAW54199.1| polypeptide deformylase [Staphylococcus epidermidis RP62A] gi|251805805|gb|EES58462.1| possible peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|281295378|gb|EFA87905.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|319401492|gb|EFV89702.1| polypeptide deformylase family protein [Staphylococcus epidermidis FRI909] gi|329730010|gb|EGG66401.1| peptide deformylase [Staphylococcus epidermidis VCU144] gi|329736235|gb|EGG72507.1| peptide deformylase [Staphylococcus epidermidis VCU028] Length = 162 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 4/146 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + +P+ + + L++++ + +Y + ++A QIGV + + Sbjct: 1 MTVKKLVKSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++ + INP + + S + EG +S+P +VKRS ITV+ D N Sbjct: 61 IDME----QEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + A +A + H +DHLNGI F Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQF 142 >gi|227538920|ref|ZP_03968969.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241123|gb|EEI91138.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 432 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 13/131 (9%) Query: 31 LIDNMLEVMYST------DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF-INPKIITF 83 L++ + + MY+T G+G+AA Q+G+ I +Q + P F +NPKII Sbjct: 282 LLELLSQRMYATVNDPDHSGVGIAAPQVGI--NKNAIWVQRFDKKDTPFEFYVNPKIIWR 339 Query: 84 SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--DGLLATCLQHELDHL 141 S EGCLSIP + DV RS I ++Y+ N II +G A QHE+DHL Sbjct: 340 SKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYV--NKTGDIIEENIEGFTAVIFQHEVDHL 397 Query: 142 NGILFIDHLSR 152 GILF D L Sbjct: 398 YGILFTDRLEE 408 >gi|187777978|ref|ZP_02994451.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC 15579] gi|187774906|gb|EDU38708.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC 15579] Length = 166 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 11/169 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M K +++ D IL R+S I+K N D ++N + + + + G G +AA QIG Sbjct: 1 MPTKSILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L H FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGYKTH-----YFINPVLEFIGDDTFQLWDDCMSFPGLEVYVERYKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + N + +Y +G L+ QHE DHL+GIL + LK I K S Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164 >gi|253999126|ref|YP_003051189.1| peptide deformylase [Methylovorus sp. SIP3-4] gi|253985805|gb|ACT50662.1| peptide deformylase [Methylovorus sp. SIP3-4] Length = 177 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 20/159 (12%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P++ DP+L + + P+ ++ ++ LI +M + M +G G+AA QIGV R+V Sbjct: 1 MPIRPVLRMGDPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVV 60 Query: 60 VIDLQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 + + KNP V +NP + +DD EGCLS+P R V R + Sbjct: 61 IFGVG-----KNPRYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPR--Y 113 Query: 110 ITVRYMDCNAQHQII--YADGLLATCLQHELDHLNGILF 146 + + Y + I G A +QHE DHL+GIL+ Sbjct: 114 VRLHYTGFDQYGNPIDRLVSGFHARVVQHECDHLDGILY 152 >gi|196004180|ref|XP_002111957.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens] gi|190585856|gb|EDV25924.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens] Length = 201 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 14/145 (9%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD------HAHRKN-- 71 P +++D+ LID M++ M S +G+AA Q+G R++ +++ A +N Sbjct: 49 PTAIVSTDVKKLIDRMIKTMRSHGDLGIAAPQLGRPLRIITLEITKRHLSYLQAQYRNVV 108 Query: 72 -----PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ V INP++ + E C SI + A V R + V +D + Sbjct: 109 QRDTVPLQVLINPQLKVLDNHKVAEYESCSSIHNCMAKVPRYTTVEVSALDRHGNRINYI 168 Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150 ADG L+ LQHE+DHL+G+L++D + Sbjct: 169 ADGWLSRILQHEVDHLDGLLYVDKM 193 >gi|284991544|ref|YP_003410098.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] gi|284064789|gb|ADB75727.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] Length = 177 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 5/150 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ + DP+LR + P+ + ++ L+ ++ + M++ G GLAA QIGV R+ Sbjct: 1 MSVTPIRLLGDPVLRTPAAPVVDFDQELRRLVADLTDTMFAAGGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP++ ++ EGCLSIP Y D +R ++ D + + Sbjct: 61 WYVDGEVGH-----LVNPEVTPVGEETEEGPEGCLSIPGYTFDCRRHLYVAATGFDLHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + LLA +QHE+DHL+G+LF+D L Sbjct: 116 PVRVEGSHLLARAVQHEVDHLDGVLFVDRL 145 >gi|330833559|ref|YP_004402384.1| polypeptide deformylase [Streptococcus suis ST3] gi|329307782|gb|AEB82198.1| polypeptide deformylase [Streptococcus suis ST3] Length = 204 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFSD 85 M E M G+GLAA QI V R++ + + + NP V NPKI+ S Sbjct: 61 MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSV 120 Query: 86 DFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 + + EGCLS+ + + V R A +TV YMD N + I G A +QHE+DHLN Sbjct: 121 QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 180 Query: 143 GILFIDHL 150 GI+F D + Sbjct: 181 GIMFYDRI 188 >gi|293366820|ref|ZP_06613496.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319121|gb|EFE59491.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] gi|329736680|gb|EGG72946.1| peptide deformylase [Staphylococcus epidermidis VCU045] Length = 162 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 4/146 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + +P+ + + L++++ + +Y + ++A QIGV + + Sbjct: 1 MTVKKLVNSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++ + INP + + S + EG +S+P +VKRS ITV+ D N Sbjct: 61 IDME----QEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + A +A + H +DHLNGI F Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQF 142 >gi|308177361|ref|YP_003916767.1| peptide deformylase [Arthrobacter arilaitensis Re117] gi|307744824|emb|CBT75796.1| peptide deformylase [Arthrobacter arilaitensis Re117] Length = 190 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 11/153 (7%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + ++ +P+L + + + + + + L+ +M M G+GLAA QIG+ R+ D Sbjct: 6 ITVYGEPVLHKRAVEVTEFDDALRALVADMHLTMDEAHGVGLAAPQIGLGLRMFTYVFAD 65 Query: 66 HAHRKNPMVFINPKII--------TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 V INPK+ D+ S EGCLS+P ++R+ + V D Sbjct: 66 QDDAPERGVVINPKLTLSKVSQAPAHPDEDS---EGCLSVPGLNYPLQRADYAKVEGFDE 122 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 A G A +QHE DHL+G L++D L Sbjct: 123 FGNPISFEAHGWFARIMQHEYDHLDGYLYVDKL 155 >gi|78049192|ref|YP_365367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926668|ref|ZP_08187982.1| peptide deformylase [Xanthomonas perforans 91-118] gi|78037622|emb|CAJ25367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543020|gb|EGD14469.1| peptide deformylase [Xanthomonas perforans 91-118] Length = 171 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 8/143 (5%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V D + R Sbjct: 10 DKRLLRVAPPVSNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASER 68 Query: 70 --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P V N +I S++ EGCLSIP RA + R FI R + Sbjct: 69 YPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGTPIE 128 Query: 124 IYADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 129 RDAEGFHARVVQHEYDHLVGRLY 151 >gi|294624946|ref|ZP_06703599.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665783|ref|ZP_06731054.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600746|gb|EFF44830.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604435|gb|EFF47815.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 171 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 8/143 (5%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V D + R Sbjct: 10 DKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASER 68 Query: 70 --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P V N +I S++ EGCLSIP RA + R FI R + Sbjct: 69 YPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGSPIE 128 Query: 124 IYADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 129 RDAEGFHARVVQHEYDHLVGRLY 151 >gi|322784370|gb|EFZ11341.1| hypothetical protein SINV_03231 [Solenopsis invicta] Length = 239 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 21/159 (13%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 DP+LR + IE +D +I ++ VM + D GL+ QIG+ +++ I+ + Sbjct: 55 DPVLRGRTMKIEPEVIRMADFQKVIKRLINVMRAYDAYGLSGPQIGLPWQIFAIECTEKT 114 Query: 67 ----------AHRKN--PM-VFINP--KIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 AH N PM +FINP K+I ++ ++Y+E C SI Y A V R+ + Sbjct: 115 MKGVEESVRKAHEMNVVPMTIFINPELKVIDYTP-ITLYEE-CASIQGYSAAVPRAYEVE 172 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + ++ +A+ A G A QHE DHL G L+I+ + Sbjct: 173 ITALNASAEQFTWRARGWSARIAQHEYDHLQGKLYIEKM 211 >gi|47459452|ref|YP_016314.1| formylmethionine deformylase [Mycoplasma mobile 163K] gi|47458782|gb|AAT28103.1| formylmethionine deformylase [Mycoplasma mobile 163K] Length = 184 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 14/131 (10%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQ--EGCLSI 97 G+G+AAVQ G+L ++ + + D N +VF INPK++ S + EGCLS+ Sbjct: 55 GVGVAAVQYGILKQMFYVYITD---EDNKVVFEDLMINPKVLAKSTSKIALRTGEGCLSV 111 Query: 98 ----PDYRADVKRSAFITVRYMDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSR 152 P+ VKRS I V+ + ++ + +G A QHELDHLNG LFIDH+ + Sbjct: 112 NEEHPNQEGYVKRSKRIVVKGYSYFKKEEVTHDLNGYPAIVFQHELDHLNGKLFIDHIDK 171 Query: 153 LKRDMITKKMS 163 I K + Sbjct: 172 ENNWFIEKDLE 182 >gi|94310371|ref|YP_583581.1| peptide deformylase [Cupriavidus metallidurans CH34] gi|93354223|gb|ABF08312.1| polypeptide or peptide deformylase [Cupriavidus metallidurans CH34] Length = 177 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 18 SRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP---- 72 +RP+ + N+ ++ LID+M + M +G GLAA QIGV ++V+ + + Sbjct: 17 ARPVTQFNTPELRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVIFGFDRNPRYPDAPTVP 76 Query: 73 -MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V INP + SD+ EGCLS+P R V R + D A+ A Sbjct: 77 KTVLINPSLEPLSDEMDDGWEGCLSVPGLRGVVPRYTRLKYTGFDMMGNRIERVAEDFHA 136 Query: 132 TCLQHELDHLNGILF 146 +QHE DHL G+L+ Sbjct: 137 RVVQHECDHLIGVLY 151 >gi|257870629|ref|ZP_05650282.1| peptide deformylase [Enterococcus gallinarum EG2] gi|257804793|gb|EEV33615.1| peptide deformylase [Enterococcus gallinarum EG2] Length = 187 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 28/166 (16%) Query: 11 DPILRRVSRPIE--------KINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR V++ + ++ D+M ++N + + + + G+GLAA Q+ + R Sbjct: 12 NPTLREVAKEVPFPLSEADIQLGKDMMEFLENSQDPVKAEELNLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKR 106 + + L + +NP V NPKI++ S + EG CLS+ P Y V R Sbjct: 72 ITAV-LVPSSDPENPEPEFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGY---VVR 127 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A IT+ Y D + Q + A +QHE+DHLNG++F DH++ Sbjct: 128 HARITISYYDMQGKKQKVRLKNYAAIVVQHEIDHLNGVMFYDHINE 173 >gi|226940980|ref|YP_002796054.1| Peptide deformylase [Laribacter hongkongensis HLHK9] gi|226715907|gb|ACO75045.1| Peptide deformylase [Laribacter hongkongensis HLHK9] Length = 183 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 11/161 (6%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L + P+ + + L++++ E M G GLAA QIG ++VV + R Sbjct: 11 DPRLLLSAEPVTAFGTPQLTRLVEDLWETMKVHSGAGLAAPQIGENLQVVVFGTGEPNPR 70 Query: 70 KN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P V INP + EGCLS+P R V R + +VRY + Q Sbjct: 71 YPDAGIVPPTVLINPIVTPLGASMEDGWEGCLSLPGLRGAVPR--YASVRYQGFDLYGQP 128 Query: 124 I--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 I +G A +QHE DHL G L+ + + R T + Sbjct: 129 IDRTVEGFHARVVQHECDHLWGFLYPMRMKDMSRFGFTDTL 169 >gi|310819401|ref|YP_003951759.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|309392473|gb|ADO69932.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 200 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 17/158 (10%) Query: 11 DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL--------- 58 +P+LR+ +R P E + ++ LI M + M G+GLAA Q+GV RL Sbjct: 10 EPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRLVVVEDRAEY 69 Query: 59 -VVIDLQD-HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V I +D A + P+ V INP ++ + EGCLS+ + A V R+ + V Sbjct: 70 HVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALVPRARGVRVE 129 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +D + + A G A LQHE DHL G L++D + Sbjct: 130 ALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRME 167 >gi|302024517|ref|ZP_07249728.1| peptide deformylase [Streptococcus suis 05HAS68] Length = 155 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFSD 85 M E M G+GLAA QI V R++ + + + NP V NPKI+ S Sbjct: 12 MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSV 71 Query: 86 DFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 + + EGCLS+ + + V R A +TV YMD N + I G A +QHE+DHLN Sbjct: 72 QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 131 Query: 143 GILFIDHL 150 GI+F D + Sbjct: 132 GIMFYDRI 139 >gi|259503065|ref|ZP_05745967.1| peptide deformylase [Lactobacillus antri DSM 16041] gi|259168931|gb|EEW53426.1| peptide deformylase [Lactobacillus antri DSM 16041] Length = 196 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 19/161 (11%) Query: 11 DPILRR----VSRPIEKINSDIMNLIDNMLEVMYSTD---------GIGLAAVQIGVLYR 57 DP+LR+ VS P+ + + + LEV G+GLAA Q+GV + Sbjct: 22 DPVLRKRAAKVSFPLSDEDQTLAKKMMEYLEVSQDPQLCEKYKLRAGVGLAAPQVGVSKQ 81 Query: 58 LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111 + + + P V INP I++ S + EG CLS+ D V R IT Sbjct: 82 MAAVLVPATEEDGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 141 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 142 LRYQDTNGEQHQVRLKNYPAIVCQHEIDHLHGMLFYDHINK 182 >gi|146319598|ref|YP_001199310.1| peptide deformylase [Streptococcus suis 05ZYH33] gi|146321796|ref|YP_001201507.1| peptide deformylase [Streptococcus suis 98HAH33] gi|253752596|ref|YP_003025737.1| polypeptide deformylase [Streptococcus suis SC84] gi|253754422|ref|YP_003027563.1| polypeptide deformylase [Streptococcus suis P1/7] gi|253756356|ref|YP_003029496.1| polypeptide deformylase [Streptococcus suis BM407] gi|158514139|sp|A4VXS1|DEF_STRSY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158514157|sp|A4W418|DEF_STRS2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145690404|gb|ABP90910.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33] gi|145692602|gb|ABP93107.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33] gi|251816885|emb|CAZ52534.1| polypeptide deformylase [Streptococcus suis SC84] gi|251818820|emb|CAZ56662.1| polypeptide deformylase [Streptococcus suis BM407] gi|251820668|emb|CAR47430.1| polypeptide deformylase [Streptococcus suis P1/7] gi|292559212|gb|ADE32213.1| Formylmethionine deformylase [Streptococcus suis GZ1] gi|319759011|gb|ADV70953.1| peptide deformylase [Streptococcus suis JS14] Length = 204 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFSD 85 M E M G+GLAA QI V R++ + + + NP V NPKI+ S Sbjct: 61 MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVLYNPKIVAHSV 120 Query: 86 DFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 + + EGCLS+ + + V R A +TV YMD N + I G A +QHE+DHLN Sbjct: 121 QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 180 Query: 143 GILFIDHL 150 G++F D + Sbjct: 181 GVMFYDRI 188 >gi|205373016|ref|ZP_03225822.1| peptide deformylase [Bacillus coahuilensis m4-4] Length = 184 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 3/112 (2%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DY 100 GIG+AA QI V R++ I + + NP +I+ S + + EGCLS+ D Sbjct: 58 GIGIAAPQIDVSKRMLAIRVPNEKGELIEEALFNPIVISHSVEQAYLTSGEGCLSVDRDV 117 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R +TV+ D N Q + + GL A QHE+DHLNGI+F DH+++ Sbjct: 118 PGFVPRYRKVTVKGFDINGQLKTLKLRGLPAIVFQHEIDHLNGIMFYDHINQ 169 >gi|223933744|ref|ZP_03625717.1| peptide deformylase [Streptococcus suis 89/1591] gi|223897586|gb|EEF63974.1| peptide deformylase [Streptococcus suis 89/1591] Length = 204 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFSD 85 M E M G+GLAA QI V R++ + + + NP V NPKI+ S Sbjct: 61 MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSV 120 Query: 86 DFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 + + EGCLS+ + + V R A +TV YMD N + I G A +QHE+DHLN Sbjct: 121 QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 180 Query: 143 GILFIDHL 150 G++F D + Sbjct: 181 GVMFYDRI 188 >gi|319941618|ref|ZP_08015942.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] gi|319804848|gb|EFW01702.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] Length = 179 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 18/150 (12%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 +P+L + + P+ S + L+ +M + M++ G+G+AA Q+GV R++ + A Sbjct: 10 EPVLMKEALPVRDFGSPRLRKLVADMWDTMHAEGGVGIAAPQVGVSERIICFGFE--ASS 67 Query: 70 KNP-------MVFINPKIITF----SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + P V INP + +DD+ EGCLS+P R V R+ I RY Sbjct: 68 RYPDAPAVPQTVLINPTVELLLEGTADDWEDGWEGCLSVPGMRGVVPRARRI--RYTGFG 125 Query: 119 AQHQII--YADGLLATCLQHELDHLNGILF 146 + I A+ A +QHE DHL GI++ Sbjct: 126 LDGETIEREAEEFHARVVQHEFDHLKGIVY 155 >gi|168693535|ref|NP_001108286.1| peptide deformylase (mitochondrial) [Xenopus laevis] gi|163916521|gb|AAI57494.1| LOC100137680 protein [Xenopus laevis] Length = 240 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR + + + D +++ ++ V+ + +G++A Q+GV R++ + + Sbjct: 69 DPVLRCTAACVPSAHVSHPDTQAIVNQLVRVLSAGCCVGISAPQLGVPLRILAVAFPEQM 128 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + P +FINP++ + + EGC S+ + A V R + + Sbjct: 129 CQAVPPEVRQAREMSPFPLQIFINPEMRILNSQTLSFPEGCSSVQGFSAVVPRYYAVEIS 188 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ +H A G A +QHE+DHL+G+L+ID + Sbjct: 189 GLNPKGEHITWQAQGWAARIIQHEMDHLDGVLYIDKM 225 >gi|115378396|ref|ZP_01465558.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|115364586|gb|EAU63659.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 188 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 17/158 (10%) Query: 11 DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL--------- 58 +P+LR+ +R P E + ++ LI M + M G+GLAA Q+GV RL Sbjct: 10 EPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRLVVVEDRAEY 69 Query: 59 -VVIDLQD-HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V I +D A + P+ V INP ++ + EGCLS+ + A V R+ + V Sbjct: 70 HVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALVPRARGVRVE 129 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +D + + A G A LQHE DHL G L++D + Sbjct: 130 ALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRME 167 >gi|332525977|ref|ZP_08402118.1| peptide deformylase [Rubrivivax benzoatilyticus JA2] gi|332109528|gb|EGJ10451.1| peptide deformylase [Rubrivivax benzoatilyticus JA2] Length = 188 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 20/173 (11%) Query: 1 MVKKPLVIFPDPI----------LRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAA 49 MV PL P P+ L RV++P+E ++ ++ L+ +M+E M + G GLAA Sbjct: 1 MVGLPLPRPPMPVHEILKMGDARLLRVAQPVEAFDTPALHALVADMIETMAAAHGAGLAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKN----PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 Q+GV +LVV + + PM V NP I SD+ EGCLS+P R V Sbjct: 61 PQVGVDLQLVVFGFERNERYPEAPAVPMTVLCNPVITPLSDETVDGWEGCLSVPGLRGVV 120 Query: 105 KRSAFITVRYMDCNAQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 R F +RY +AQ + I A+G A +QHE DHL G L+ ++ L + Sbjct: 121 PR--FARIRYTGFDAQGRPIEREAEGFHARVVQHECDHLIGRLYPTRMNDLTK 171 >gi|195444657|ref|XP_002069968.1| GK11287 [Drosophila willistoni] gi|194166053|gb|EDW80954.1| GK11287 [Drosophila willistoni] Length = 241 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 17/159 (10%) Query: 11 DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR+ + P E ++S +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 59 DPVLRQQAALVPPEHLDSPEIKAIVEQMIKVLRKYNCVGIAAPQIGVSLRIIAMEFKKEI 118 Query: 68 HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ P V INP++ S + EGC+S+ Y +V+R + + Sbjct: 119 RKELPEFTYQARLMSELPLTVLINPELTVTSYVKLKHPEGCMSVRGYSGEVERYEAVNLN 178 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D I G A QHE+DHL+G L+ D + R Sbjct: 179 GHDRLGVKTQISLTGWNARIAQHEMDHLDGKLYTDRMDR 217 >gi|224283284|ref|ZP_03646606.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171] Length = 136 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P + N + ++ + + + G +G+AA IGV R++V QD + +N Sbjct: 7 LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIV--FQDKENNRN 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 ++F NP+II SD F EGCLS+ R R ITV Y + + DG A Sbjct: 65 AIMF-NPRIIAGSDPFDT-AEGCLSLDGERP-TTRYQSITVTYQARSGREYTTAFDGFTA 121 Query: 132 TCLQHELDHLNGIL 145 +QHE+DH+NGI+ Sbjct: 122 QIIQHEIDHVNGII 135 >gi|328783477|ref|XP_623373.2| PREDICTED: hypothetical protein LOC409613 isoform 2 [Apis mellifera] Length = 328 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 14/136 (10%) Query: 29 MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD----HAH---RK------NPMV- 74 ++D++ E++ D +GLAA QIG+ ++L V+++ + H H RK +P+ Sbjct: 171 FQILDHLYELLKKNDTVGLAAPQIGLPWQLFVVEMTEESIEHIHPYIRKCYGITPHPLTY 230 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 FINPK+ + + V+ E C SI Y A+V R + + ++ + + A+G LA + Sbjct: 231 FINPKMNIINSEEVVHFETCASIDCYYAEVPRPKEVQIEALNKFGESFSMKAEGWLARII 290 Query: 135 QHELDHLNGILFIDHL 150 HE+DHL G L+ D + Sbjct: 291 HHEMDHLKGHLYTDRM 306 >gi|310287644|ref|YP_003938902.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|311064553|ref|YP_003971278.1| peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313140433|ref|ZP_07802626.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171] gi|309251580|gb|ADO53328.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|310866872|gb|ADP36241.1| Fms Peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313132943|gb|EFR50560.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171] Length = 141 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P + N + ++ + + + G +G+AA IGV R++V QD + +N Sbjct: 12 LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIV--FQDKENNRN 69 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 ++F NP+II SD F EGCLS+ R R ITV Y + + DG A Sbjct: 70 AIMF-NPRIIAGSDPFDT-AEGCLSLDGERP-TTRYQSITVTYQARSGREYTTAFDGFTA 126 Query: 132 TCLQHELDHLNGIL 145 +QHE+DH+NGI+ Sbjct: 127 QIIQHEIDHVNGII 140 >gi|226948142|ref|YP_002803233.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|226841538|gb|ACO84204.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto] Length = 166 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M KP+++ D L R S I+K N D ++N + + + + G G +AA QIG Sbjct: 1 MSAKPILLLGDETLYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D H FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIHMHLGDKTH-----YFINPILEFIGEDTFPLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLDWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|260906787|ref|ZP_05915109.1| polypeptide deformylase [Brevibacterium linens BL2] Length = 168 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 5/162 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + ++ DP+LR P+ + + L ++++ +AA QIGV R Sbjct: 1 MAERDIRLWGDPVLRSPCAPVTVFDEGLRALAQDLVDTSLPEGRAAVAAPQIGVGVRAFG 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 DL INP+++ + +EGCLS+P R F VR +D Sbjct: 61 YDLDGRTG-----YVINPEVVEVGGELRDIEEGCLSVPGLFFPTPRYEFARVRGVDAENS 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 I + A LQHE+ HL+G +++ L + +R K + Sbjct: 116 PVEISGTEVFAQMLQHEVAHLDGQVYVQTLPKERRREAMKAI 157 >gi|212639721|ref|YP_002316241.1| peptide deformylase [Anoxybacillus flavithermus WK1] gi|212561201|gb|ACJ34256.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1] Length = 184 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 9/115 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLS----I 97 GIGLAA QI V R++ + + D + NPKI++ S + + EGCLS I Sbjct: 58 GIGLAAPQINVSKRMIAVHVTDEKGTLHSYALFNPKIVSHSVEMCYLTSGEGCLSVDKAI 117 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 P Y V R ITV + + GL A QHE+DHLNGI+F DH+++ Sbjct: 118 PGY---VPRYMRITVTGTTLEDETVKLRLKGLPAIVFQHEIDHLNGIMFYDHINK 169 >gi|319793878|ref|YP_004155518.1| peptide deformylase [Variovorax paradoxus EPS] gi|315596341|gb|ADU37407.1| peptide deformylase [Variovorax paradoxus EPS] Length = 179 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 11/145 (7%) Query: 11 DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--DLQDHA 67 DP L R+++P+ ++D ++L + +M E M++ +G GLAA QIGV +LV+ D+ + Sbjct: 11 DPRLLRIAQPVAAFDTDELHLLVRDMFETMHAVNGAGLAAPQIGVDQQLVIFGTDIVNPR 70 Query: 68 HRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P V +NP I +D EGCLS+P R V R F +RY + Sbjct: 71 YPDAPPVPRTVLLNPVITPIGEDEEEGWEGCLSVPGLRGVVPR--FANIRYTGFDPYGDP 128 Query: 124 I--YADGLLATCLQHELDHLNGILF 146 I A G A +QHE+DHL G L+ Sbjct: 129 IDRVASGFHARVVQHEVDHLLGKLY 153 >gi|56419592|ref|YP_146910.1| peptide deformylase [Geobacillus kaustophilus HTA426] gi|261419255|ref|YP_003252937.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297530776|ref|YP_003672051.1| peptide deformylase [Geobacillus sp. C56-T3] gi|319766070|ref|YP_004131571.1| peptide deformylase [Geobacillus sp. Y412MC52] gi|56379434|dbj|BAD75342.1| peptide deformylase2 (PDF 2) N-formylmethionylaminoacyl-tRNA deformylase [Geobacillus kaustophilus HTA426] gi|261375712|gb|ACX78455.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297254028|gb|ADI27474.1| peptide deformylase [Geobacillus sp. C56-T3] gi|317110936|gb|ADU93428.1| peptide deformylase [Geobacillus sp. Y412MC52] Length = 184 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 16/156 (10%) Query: 12 PILRRVSRPI--------EKINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYRL 58 P LR+++ P+ ++I +++ + D L Y GIGLAA QI V R+ Sbjct: 13 PTLRKIAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFITVRYM 115 + + + D NPKI++ S + EGCLS+ D V R A ITV Sbjct: 73 IAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVPRYARITVTGT 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + + GL A QHE+DHLNGI+F D ++ Sbjct: 133 TIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRIN 168 >gi|330685497|gb|EGG97150.1| peptide deformylase [Staphylococcus epidermidis VCU121] Length = 162 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PI + + P+E + + + ++ + +Y+ +G L+A QIG+ ++ + Sbjct: 1 MSVKKLVKSEHPIFNQPANPVEHFDDQLKQTLMDIEDSLYALEGSALSANQIGINQQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++ + + INPKI S++ EG +S+P+ +V+R+ I V D N Sbjct: 61 VDME----MEGLLQLINPKIKNQSEETITDLEGSVSLPNVFGEVERNKMIVVESNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D LNGI F + R+ Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTEKAKRI 149 >gi|241888581|ref|ZP_04775888.1| peptide deformylase [Gemella haemolysans ATCC 10379] gi|241864604|gb|EER68979.1| peptide deformylase [Gemella haemolysans ATCC 10379] Length = 184 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 5/125 (4%) Query: 33 DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI--NPKIITFSDD--FS 88 D E + GIGLAA QI V R++ + + D ++ + + NPKII+ S + Sbjct: 47 DEKAEKLGLKPGIGLAAPQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSATKCYL 106 Query: 89 VYQEGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 EGCLS+ D + V R + I V + N + + L A C QHE+DHLNG++F Sbjct: 107 AGGEGCLSVDKDIKGYVPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFY 166 Query: 148 DHLSR 152 DH+++ Sbjct: 167 DHINK 171 >gi|332685838|ref|YP_004455612.1| peptide deformylase [Melissococcus plutonius ATCC 35311] gi|332369847|dbj|BAK20803.1| peptide deformylase [Melissococcus plutonius ATCC 35311] Length = 187 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 20/162 (12%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQIGVLYR 57 +P LR++++ + + D +NL ML E M+ G+GLAA Q+ + R Sbjct: 12 NPTLRQIAKEVPVPLTEDDINLGREMLTFLKNSQDPIKAEEMHLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDLQDHAHRKNPM----VFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFI 110 ++ + + D ++ M V NPKI++ S D EGCLS+ + V R I Sbjct: 72 IIAVHIPDLDPDQSEMLLSTVMYNPKIVSHSVQDACLSEGEGCLSVDREVSGYVVRHHKI 131 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 T+ Y D + + G A +QHE+DH+NG+LF DH+++ Sbjct: 132 TITYFDETNEKHKLRLKGYAAIVVQHEIDHINGVLFYDHINQ 173 >gi|219130004|ref|XP_002185165.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP 1055/1] gi|217403344|gb|EEC43297.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP 1055/1] Length = 160 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 25/161 (15%) Query: 9 FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVVIDLQD 65 +PDPILRR ++P++ + + +L S +GLAA Q GV R+V + ++ Sbjct: 4 WPDPILRRPAQPVDAHWFGTGTLQKACALLRATSVSEKAVGLAAQQCGVDARIVYLQPEE 63 Query: 66 HAHRKNPMV---------------FINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107 ++P++ INP+I+ S + V ++E CL +P + A V R Sbjct: 64 ----RHPLINRRSFQRTAELSEITMINPQIVERSPELDVHSWREHCLVLPPTFDATVLRD 119 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 +++T+ + D + + + G +A +QHELDH GIL D Sbjct: 120 SWVTIVFRDIHGRPHSVRLRGEMARAVQHELDHDRGILITD 160 >gi|319649756|ref|ZP_08003909.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] gi|317398510|gb|EFV79195.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] Length = 183 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 10/115 (8%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----I 97 GIGLAA QI V R++ + + + + +F NPKII+ S S EGCLS I Sbjct: 58 GIGLAAPQINVSRRMIAVHVTYNQDLYSYALF-NPKIISHSVQLSYLAEGEGCLSVDESI 116 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 P + V R A +TV+ D + GL A QHE+DHLNGI+F DH+++ Sbjct: 117 PGF---VPRYAKVTVKGTDLQGNEVKLKLKGLPAIVFQHEIDHLNGIMFYDHINK 168 >gi|58580698|ref|YP_199714.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425292|gb|AAW74329.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 212 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68 D L RV+ + + S ++ L+ +M E M + G+GLAA QI V +L+V + + Sbjct: 51 DKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERY 110 Query: 69 RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V N +I SD+ EGCLSIP RA + R +I R + Sbjct: 111 PEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIER 170 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 171 EAEGFHARVVQHEYDHLVGRLY 192 >gi|307329049|ref|ZP_07608216.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306885244|gb|EFN16263.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 500 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 13/145 (8%) Query: 11 DPILRRVSRPI---------EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 DPIL + +RP ++ +++++ + V G+G+AA QIG+ ++ Sbjct: 332 DPILTKTARPFALPDEAEDARRVVAELISAAERAATVHVFGKGMGVAAPQIGIDRAAAIV 391 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + +NP+I+ S + EGCLS D R V R I+V + D + Q Sbjct: 392 RTPE----GETLTLLNPRIVEESPEADEQYEGCLSFFDVRGKVPRPLAISVEHQDIDGQQ 447 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 +I + +A + HE+DHL+G+L+ Sbjct: 448 RITIFERGMARLVAHEVDHLHGLLY 472 >gi|6225247|sp|O31410|DEF2_BACST RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|22219287|pdb|1LQY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Peptide Deformylase Complexed With Antibiotic Actinonin gi|2266414|emb|CAA71581.1| N-formylmethionylaminoacyl-tRNA deformylase [Geobacillus stearothermophilus] Length = 184 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 22/159 (13%) Query: 12 PILRRVSRPI--------EKINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYRL 58 P LR+V+ P+ ++I +++ + D L Y GIGLAA QI V R+ Sbjct: 13 PTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITV 112 + + + D NPKI++ S + EGCLS+ P Y V R A ITV Sbjct: 73 IAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGY---VLRYARITV 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + + GL A QHE+DHLNGI+F D ++ Sbjct: 130 TGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRIN 168 >gi|120611762|ref|YP_971440.1| peptide deformylase [Acidovorax citrulli AAC00-1] gi|120590226|gb|ABM33666.1| peptide deformylase [Acidovorax citrulli AAC00-1] Length = 200 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 7/140 (5%) Query: 14 LRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-- 70 L R +RP+ + + ++ L+ +M + M + +G GLAA QIGV ++V+ ++ R Sbjct: 35 LLRTARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVVIFGSEERNPRYPD 94 Query: 71 ----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 P V +NP+I + EGCLS+P R V R + I R D + Sbjct: 95 RPLVPPTVLVNPRITPLGGEEEEDWEGCLSVPGLRGVVPRWSRIHYRGFDEHGAPIDRTV 154 Query: 127 DGLLATCLQHELDHLNGILF 146 +G A +QHE DHL G L+ Sbjct: 155 EGFHARVVQHECDHLVGKLY 174 >gi|260221950|emb|CBA31026.1| hypothetical protein Csp_C26490 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 397 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +PD L V++P+ +++ I L +MLE MY GIGLAA QI V R++VID+ Sbjct: 33 PILCYPDTRLHTVAKPVSQVDDRIRTLTADMLETMYDAKGIGLAATQIDVHERVIVIDVS 92 Query: 65 DHAHRKNPMVFINPKII 81 + R PMV INP+++ Sbjct: 93 E--DRDQPMVLINPELV 107 >gi|219855695|ref|YP_002472817.1| hypothetical protein CKR_2352 [Clostridium kluyveri NBRC 12016] gi|219569419|dbj|BAH07403.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 180 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 12/137 (8%) Query: 26 SDIMNLIDNMLEVMYST-----DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 + +MN + N + + S G+GL+A QIG+ R+ V+ D +++ INPKI Sbjct: 32 TSMMNFLKNSQDSILSKKYKLRGGVGLSANQIGLNKRMFVVYFTDEKGKEHEYTLINPKI 91 Query: 81 ITFSDDFSVY---QEGCLSIPDYRAD--VKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 I+ S +Y EGCLS+ D D V R I V+ + + I+ +G + +Q Sbjct: 92 ISHSVSM-IYLPPSEGCLSV-DRVIDGFVPRYERIKVKGFNLEGEEIILKLNGYSSIVIQ 149 Query: 136 HELDHLNGILFIDHLSR 152 HE+DHLNGI+F + +++ Sbjct: 150 HEIDHLNGIMFYERINK 166 >gi|73663007|ref|YP_301788.1| peptide deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495522|dbj|BAE18843.1| formylmethionine deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 183 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 5/128 (3%) Query: 28 IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS- 84 ++N D+ + Y G+GLAA QI + +++ + L D + K+ ++ +NPKI++ S Sbjct: 41 LINSQDDEIATKYGLRSGVGLAAPQINISKKMIAVYLPDDGNGKSYDLMLVNPKIMSHSI 100 Query: 85 -DDFSVYQEGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 + + EGCLS+ + V R ITV+ D + + + G A +QHE+DH+N Sbjct: 101 QEAYLPTGEGCLSVDENIPGLVHRKNRITVKATDIDGKEVKLRLKGYPAVVVQHEIDHIN 160 Query: 143 GILFIDHL 150 GI+F DH+ Sbjct: 161 GIMFYDHI 168 >gi|328675640|gb|AEB28315.1| Peptide deformylase [Francisella cf. novicida 3523] Length = 204 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 20/152 (13%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ +I S +I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 16 NQVLYQKCKPVSEIKSVEIQNIITEMYEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 73 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + P VFINPKI S + GCLS KR T + ++ A + Sbjct: 74 RYPFDFGSVPYQVFINPKITKASKQRVSFWHGCLSA----LGEKRGKLATYKEIEYEAYN 129 Query: 122 Q-----IIYADGLLATCLQHELDHLNGILFID 148 Q I D + A QHE +HL G +++D Sbjct: 130 QHGEKIIGKLDSIAAVIFQHEFNHLLGSVYVD 161 >gi|254495945|ref|ZP_05108853.1| peptide deformylase [Legionella drancourtii LLAP12] gi|254354823|gb|EET13450.1| peptide deformylase [Legionella drancourtii LLAP12] Length = 179 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P+V F DP +R S P ++ LI NM + M + G+G+AA QIG R+++ Sbjct: 19 EPVVDF-DPAIR--SYP------ELTELIQNMKDTMDAKGGVGIAAPQIGYNKRVIMFGF 69 Query: 64 QDHAHRKN--PMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + N P+ F INP SD+ EGCLS+P R V R I D Sbjct: 70 EKNKRYPNEKPVPFTILINPIYQIMSDELVEEWEGCLSVPGLRGLVPRYKKIEYSGYDPE 129 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + A A +QHE DHL+G+LF Sbjct: 130 GKLITRVAADFHARIIQHECDHLDGVLF 157 >gi|21244235|ref|NP_643817.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306] gi|25452915|sp|Q8PGV2|DEF1_XANAC RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|21109877|gb|AAM38353.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306] Length = 171 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 8/143 (5%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V D + R Sbjct: 10 DKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASER 68 Query: 70 --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P V N +I S+D EGCLSIP RA + R FI R + Sbjct: 69 YPEAPAVPRTALANAQIEPLSEDMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGSPIE 128 Query: 124 IYADGLLATCLQHELDHLNGILF 146 A+G A +QHE D+L G L+ Sbjct: 129 RDAEGFHARVVQHEYDNLVGRLY 151 >gi|296130447|ref|YP_003637697.1| Peptide deformylase [Cellulomonas flavigena DSM 20109] gi|296022262|gb|ADG75498.1| Peptide deformylase [Cellulomonas flavigena DSM 20109] Length = 230 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 12/157 (7%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNML--EVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V P+LR ++RP + D L M + G+GLAA QIG+ L V+ Sbjct: 28 APIVQAGHPVLRAMARPYDGQVDDAELTELLALLHRTMRAAPGVGLAAPQIGLPLALAVV 87 Query: 62 ------DLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 D + R+ P+ V +NP D+ + EGCLS+ Y+A V R + Sbjct: 88 EDPGTGDGEAARVRERPVLPYRVLVNPTYAPAGDELVAFYEGCLSVEGYQAVVPRQRAVH 147 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + +D G A +QHE DHL+G L++D Sbjct: 148 LTGLDETGATLDEVVTGWPARIVQHETDHLHGTLYLD 184 >gi|148543862|ref|YP_001271232.1| peptide deformylase [Lactobacillus reuteri DSM 20016] gi|184153262|ref|YP_001841603.1| peptide deformylase [Lactobacillus reuteri JCM 1112] gi|227364768|ref|ZP_03848817.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|325682605|ref|ZP_08162122.1| peptide deformylase [Lactobacillus reuteri MM4-1A] gi|167012064|sp|A5VJ71|DEF_LACRD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229487489|sp|B2G6P1|DEF_LACRJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148530896|gb|ABQ82895.1| peptide deformylase [Lactobacillus reuteri DSM 20016] gi|183224606|dbj|BAG25123.1| N-formylmethionyl-tRNA deformylase [Lactobacillus reuteri JCM 1112] gi|227070227|gb|EEI08601.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|324978444|gb|EGC15394.1| peptide deformylase [Lactobacillus reuteri MM4-1A] Length = 186 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 19/161 (11%) Query: 11 DPILRR----VSRPI----EKINSDIMNLID-----NMLEVMYSTDGIGLAAVQIGVLYR 57 +P+LR+ VS P+ +K+ D+M ++ + + G+GLAA Q+GV + Sbjct: 12 NPVLRKRAAKVSFPLSDEDQKLAKDMMKYLEVSQDPELCKKYKLRAGVGLAAPQVGVSKQ 71 Query: 58 LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111 + + + + P+ V INP I++ S + EG CLS+ D V R IT Sbjct: 72 MAAVLVPAPDEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 131 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 132 LRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172 >gi|153955271|ref|YP_001396036.1| Def2 [Clostridium kluyveri DSM 555] gi|146348129|gb|EDK34665.1| Def2 [Clostridium kluyveri DSM 555] Length = 191 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 12/137 (8%) Query: 26 SDIMNLIDNMLEVMYST-----DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 + +MN + N + + S G+GL+A QIG+ R+ V+ D +++ INPKI Sbjct: 43 TSMMNFLKNSQDSILSKKYKLRGGVGLSANQIGLNKRMFVVYFTDEKGKEHEYTLINPKI 102 Query: 81 ITFSDDFSVY---QEGCLSIPDYRAD--VKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 I+ S +Y EGCLS+ D D V R I V+ + + I+ +G + +Q Sbjct: 103 ISHSVSM-IYLPPSEGCLSV-DRVIDGFVPRYERIKVKGFNLEGEEIILKLNGYSSIVIQ 160 Query: 136 HELDHLNGILFIDHLSR 152 HE+DHLNGI+F + +++ Sbjct: 161 HEIDHLNGIMFYERINK 177 >gi|313201227|ref|YP_004039885.1| peptide deformylase [Methylovorus sp. MP688] gi|312440543|gb|ADQ84649.1| peptide deformylase [Methylovorus sp. MP688] Length = 169 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 20/149 (13%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP+L + + P+ ++ ++ LI +M + M +G G+AA QIGV R+V+ + Sbjct: 3 DPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVVIFGVG----- 57 Query: 70 KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 KNP V +NP + +DD EGCLS+P R V R ++ + Y + Sbjct: 58 KNPRYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPR--YVRLHYTGFDQ 115 Query: 120 QHQII--YADGLLATCLQHELDHLNGILF 146 I G A +QHE DHL+GIL+ Sbjct: 116 YGNPIDRLVSGFHARVVQHECDHLDGILY 144 >gi|315658596|ref|ZP_07911467.1| peptide deformylase [Staphylococcus lugdunensis M23590] gi|315496385|gb|EFU84709.1| peptide deformylase [Staphylococcus lugdunensis M23590] Length = 183 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITFSDDFSV--YQEGCLSIPDY 100 G+GLAA QI + +++ + L D + R ++ +NPK+I++S ++ EGCLS+ Sbjct: 58 GVGLAAPQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVISYSVQYAYLPTGEGCLSVDKN 117 Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 A V R +TV+ D + + + G A +QHE+DHLNGI+F DH+ Sbjct: 118 IAGLVHRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHI 168 >gi|148972164|ref|ZP_01811404.1| peptide deformylase [Leptolyngbya valderiana BDU 20041] gi|148872760|gb|EDL71126.1| peptide deformylase [Leptolyngbya valderiana BDU 20041] Length = 118 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 48/87 (55%) Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 HA P +NP+I+ SDD + EGCLS+P R V R I V Y+D + + Q Sbjct: 12 HAPMLEPTAMVNPRILHCSDDRVLGWEGCLSVPGRRGWVPRYREIEVEYLDRSGRLQRRV 71 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 +A QHE DHLNG++F+D + + Sbjct: 72 LKDFVARIFQHEFDHLNGLVFLDRVEK 98 >gi|84622632|ref|YP_450004.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578324|ref|YP_001915253.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] gi|242556373|pdb|3DLD|A Chain A, Crystal Structure Of Peptide Deformylase, Xoo1075, From Xanthomonas Oryzae Pv. Oryzae Kacc10331 gi|84366572|dbj|BAE67730.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522776|gb|ACD60721.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 171 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68 D L RV+ + + S ++ L+ +M E M + G+GLAA QI V +L+V + + Sbjct: 10 DKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERY 69 Query: 69 RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V N +I SD+ EGCLSIP RA + R +I R + Sbjct: 70 PEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIER 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 EAEGFHARVVQHEYDHLVGRLY 151 >gi|256846996|ref|ZP_05552442.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] gi|256715660|gb|EEU30635.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] Length = 186 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 25/164 (15%) Query: 11 DPILR----RVSRPIEKINSDIMNLIDNMLEVMYSTD---------GIGLAAVQIGVLYR 57 DP+LR +VS P+ + + + LEV + G+GLAA Q+GV + Sbjct: 12 DPVLRQRAAKVSFPLTDDEREFAHQLMEYLEVSQDPELCKKYGLRAGVGLAAPQVGVSKQ 71 Query: 58 LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLS----IPDYRADVKRSA 108 + + + P V INP II+ S + V EG CLS IP Y V R Sbjct: 72 MASVLVPADEEGGKPQFKDVIINPVIISESVQYGVLTEGEGCLSVDKDIPGY---VPRHD 128 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT++Y D + + I A QHE+DHL+G+LF DH+++ Sbjct: 129 RITLKYQDVDGETHQIRLKHYPAIVCQHEIDHLHGVLFYDHINK 172 >gi|206560457|ref|YP_002231221.1| peptide deformylase [Burkholderia cenocepacia J2315] gi|198036498|emb|CAR52395.1| putative deformylase [Burkholderia cenocepacia J2315] Length = 177 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L V++P+E+ ++ ++ ++ +M E M+ +G GLAA QIG+ ++++ ++ Sbjct: 10 DPRLLEVAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGNNNRY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INPKI D EGCLS+P R V R A + D Q Sbjct: 70 PDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGQKIDR 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ ++ R T+ Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165 >gi|16803091|ref|NP_464576.1| peptide deformylase [Listeria monocytogenes EGD-e] gi|47096139|ref|ZP_00233739.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854] gi|224500304|ref|ZP_03668653.1| peptide deformylase [Listeria monocytogenes Finland 1988] gi|224502635|ref|ZP_03670942.1| peptide deformylase [Listeria monocytogenes FSL R2-561] gi|254828428|ref|ZP_05233115.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165] gi|254830180|ref|ZP_05234835.1| peptide deformylase [Listeria monocytogenes 10403S] gi|254898776|ref|ZP_05258700.1| peptide deformylase [Listeria monocytogenes J0161] gi|254911735|ref|ZP_05261747.1| peptide deformylase [Listeria monocytogenes J2818] gi|254936061|ref|ZP_05267758.1| polypeptide deformylase [Listeria monocytogenes F6900] gi|284801383|ref|YP_003413248.1| peptide deformylase [Listeria monocytogenes 08-5578] gi|284994525|ref|YP_003416293.1| peptide deformylase [Listeria monocytogenes 08-5923] gi|23396542|sp|Q8Y866|DEF_LISMO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|16410453|emb|CAC99129.1| lmo1051 [Listeria monocytogenes EGD-e] gi|47015488|gb|EAL06421.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854] gi|258600823|gb|EEW14148.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165] gi|258608650|gb|EEW21258.1| polypeptide deformylase [Listeria monocytogenes F6900] gi|284056945|gb|ADB67886.1| peptide deformylase [Listeria monocytogenes 08-5578] gi|284059992|gb|ADB70931.1| peptide deformylase [Listeria monocytogenes 08-5923] gi|293589685|gb|EFF98019.1| peptide deformylase [Listeria monocytogenes J2818] Length = 183 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 22/160 (13%) Query: 12 PILRRVSRPI--------EKINSDIMNLI-----DNMLEVMYSTDGIGLAAVQIGVLYRL 58 P LR V+ + +K+ D++ + +++ E G+G+AA Q+ V R Sbjct: 13 PALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRF 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112 + I + D R V NPKI + S + EGCLS+ P Y V RS +T+ Sbjct: 73 LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D N + G A +QHE+DHLNGI+F DH+++ Sbjct: 130 DAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINK 169 >gi|229544091|ref|ZP_04433150.1| peptide deformylase [Bacillus coagulans 36D1] gi|229325230|gb|EEN90906.1| peptide deformylase [Bacillus coagulans 36D1] Length = 193 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 6/113 (5%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYR 101 G+GL+A QIG+ R+ + + D K VF NPK+++ S + EGCLS+ D + Sbjct: 66 GVGLSANQIGLNKRMFAVYIADEDGEKAYTVF-NPKLVSHSISMIYLPQGEGCLSV-DRK 123 Query: 102 AD--VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D V R I V+ D + +I G A QHE+DHLNGI+F DH+++ Sbjct: 124 VDGFVPRYERIKVKAYDLDGNEVLIKLKGYPAIVFQHEMDHLNGIMFYDHINK 176 >gi|253996543|ref|YP_003048607.1| peptide deformylase [Methylotenera mobilis JLW8] gi|253983222|gb|ACT48080.1| peptide deformylase [Methylotenera mobilis JLW8] Length = 181 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 12/155 (7%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 +P L + P+ + N+ ++ LI ++ + M +G G+AA QIGV R+V+ ++ A Sbjct: 11 EPCLLAKAEPVAQFNTAELHQLIQDLEDTMQHMNGAGIAAPQIGVSLRVVIFGQKEPA-A 69 Query: 70 KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 NP V INPK+ D EGCLS+P R V R + D Sbjct: 70 VNPRYPDADAVPYTVLINPKLTLIGDKIENDWEGCLSVPGMRGIVPRHLKLHYTGFDQYG 129 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 G A +QHE DHL+G+L+ + LK Sbjct: 130 NKVDRLVSGFHARVVQHECDHLDGVLYPMRIRDLK 164 >gi|144574929|gb|AAZ43441.2| putative polypeptide deformylase [Mycoplasma synoviae 53] Length = 189 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 25/168 (14%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------EVMYST--DGIGLAAVQIGVLY 56 +V PD ILR S+ +E ++ + + L + M+ + +ST G+G+AA+Q G+ Sbjct: 12 IVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQK 71 Query: 57 RLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSV---YQEGCLSIPD----YRADVK 105 + + L N +VF NP I+TF + EGCLS+PD V Sbjct: 72 NVFYVKL---TQNDNSVVFDDVLFNP-IVTFKGKILTALAHGEGCLSVPDEIPNQEGLVS 127 Query: 106 RSAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 RS I V+ Y +H + G LA QHELDHLNG LFID +++ Sbjct: 128 RSYEIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 175 >gi|71894044|ref|YP_278152.1| putative polypeptide deformylase [Mycoplasma synoviae 53] Length = 186 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 25/168 (14%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------EVMYST--DGIGLAAVQIGVLY 56 +V PD ILR S+ +E ++ + + L + M+ + +ST G+G+AA+Q G+ Sbjct: 9 IVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQK 68 Query: 57 RLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSV---YQEGCLSIPD----YRADVK 105 + + L N +VF NP I+TF + EGCLS+PD V Sbjct: 69 NVFYVKL---TQNDNSVVFDDVLFNP-IVTFKGKILTALAHGEGCLSVPDEIPNQEGLVS 124 Query: 106 RSAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 RS I V+ Y +H + G LA QHELDHLNG LFID +++ Sbjct: 125 RSYEIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 172 >gi|308173421|ref|YP_003920126.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7] gi|307606285|emb|CBI42656.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7] gi|328553649|gb|AEB24141.1| peptide deformylase [Bacillus amyloliquefaciens TA208] gi|328911506|gb|AEB63102.1| formylmethionine deformylase A [Bacillus amyloliquefaciens LL3] Length = 184 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----I 97 G+GLAA Q V R++ + +D NPKI++ S + S EGCLS I Sbjct: 58 GVGLAAPQTAVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPI 117 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 P Y V R A I V+ + I G A QHE+DHLNG++F DH+ + Sbjct: 118 PGY---VPRYARIRVKATTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDK 169 >gi|126650157|ref|ZP_01722390.1| peptide deformylase [Bacillus sp. B14905] gi|126593329|gb|EAZ87291.1| peptide deformylase [Bacillus sp. B14905] Length = 192 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 4/112 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DY 100 G GL+A QIGV R+ + ++H +K+ M+FINPK+++ S + + EGCLS+ Sbjct: 66 GSGLSANQIGVDKRMFAVLFENHD-QKHEMMFINPKVMSHSFNMIYLPEGEGCLSVNRPV 124 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R I V+ + + Q I+ G + +QHE+DHLNGI+F D +++ Sbjct: 125 HGFVPRYERIKVKAYNIDGQEFIMSLKGYESIVVQHEIDHLNGIMFYDRINK 176 >gi|46907283|ref|YP_013672.1| peptide deformylase [Listeria monocytogenes serotype 4b str. F2365] gi|47092943|ref|ZP_00230724.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858] gi|226223669|ref|YP_002757776.1| formylmethionine deformylase [Listeria monocytogenes Clip81459] gi|254823676|ref|ZP_05228677.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194] gi|254853062|ref|ZP_05242410.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503] gi|254933401|ref|ZP_05266760.1| polypeptide deformylase [Listeria monocytogenes HPB2262] gi|254992568|ref|ZP_05274758.1| peptide deformylase [Listeria monocytogenes FSL J2-064] gi|255522443|ref|ZP_05389680.1| peptide deformylase [Listeria monocytogenes FSL J1-175] gi|300765902|ref|ZP_07075875.1| peptide deformylase [Listeria monocytogenes FSL N1-017] gi|67460118|sp|Q721B5|DEF_LISMF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|259645183|sp|C1L1X2|DEF_LISMC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|46880550|gb|AAT03849.1| peptide deformylase [Listeria monocytogenes serotype 4b str. F2365] gi|47018690|gb|EAL09442.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858] gi|225876131|emb|CAS04837.1| Putative formylmethionine deformylase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606409|gb|EEW19017.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503] gi|293584962|gb|EFF96994.1| polypeptide deformylase [Listeria monocytogenes HPB2262] gi|293592898|gb|EFG00659.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194] gi|300513364|gb|EFK40438.1| peptide deformylase [Listeria monocytogenes FSL N1-017] gi|328466823|gb|EGF37937.1| peptide deformylase [Listeria monocytogenes 1816] gi|332311460|gb|EGJ24555.1| Peptide deformylase 1 [Listeria monocytogenes str. Scott A] Length = 183 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 10/132 (7%) Query: 28 IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 ++N D L Y G+G+AA Q+ V R + I + D R V NPKI + S Sbjct: 41 LINSQDEELAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQ 100 Query: 87 FSVYQ--EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 + EGCLS+ P Y V RS +T+ D N + G A +QHE+DH Sbjct: 101 QACLSGGEGCLSVDREVPGY---VVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDH 157 Query: 141 LNGILFIDHLSR 152 LNGI+F DH+++ Sbjct: 158 LNGIMFYDHINK 169 >gi|289671064|ref|ZP_06492139.1| peptide deformylase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 171 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 8/143 (5%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V D + R Sbjct: 10 DKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASER 68 Query: 70 --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P V N +I S++ EGCLSIP RA + R +I R + + Sbjct: 69 YPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGVAPDDSPIA 128 Query: 124 IYADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 129 REAEGFHARVVQHEYDHLVGRLY 151 >gi|270284117|ref|ZP_05965571.2| peptide deformylase [Bifidobacterium gallicum DSM 20093] gi|270277126|gb|EFA22980.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] Length = 221 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 15/157 (9%) Query: 5 PLVIFPDPILRRVSRP-IEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + P + ++++ + LI+ M M G+G+AA QIG+ V+ Sbjct: 33 PMVEVGDPVLRAQAEPYVGQLSAKTLAKLIEAMRVTMLDAPGVGVAAPQIGLSLAFAVV- 91 Query: 63 LQDHAHRK---NPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +DH + +P F INP D + + EGCLS P ++A +R I Sbjct: 92 -EDHTSEEYDDDPREFAEFPFHVIINPSYDPVGDKTAKFFEGCLSFPGFQAVRERYVDIM 150 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + D G A QHE DHL+G ++ID Sbjct: 151 AHWTDEQGVRHDEPLHGWPARIFQHETDHLSGEIYID 187 >gi|325918418|ref|ZP_08180546.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] gi|325535380|gb|EGD07248.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] Length = 176 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68 D L RV+ P+ + S ++ L+ +M E M G+GLAA QI V +L+V + + Sbjct: 15 DKRLLRVAPPVTNLGSAELQALVADMFETMDDARGVGLAAPQIAVDLQLMVFGFEVSERY 74 Query: 69 RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P V N +I SD+ EGCLSIP RA + R I R + Sbjct: 75 PDAPTVPRTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRHIRYRGFAPDGSPIER 134 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 135 EAEGFHARVVQHEYDHLVGRLY 156 >gi|89097400|ref|ZP_01170289.1| peptide deformylase [Bacillus sp. NRRL B-14911] gi|89087696|gb|EAR66808.1| peptide deformylase [Bacillus sp. NRRL B-14911] Length = 192 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 18/166 (10%) Query: 4 KPLVIFPDPILRR----VSRPIEKINSDIMNLIDNML------EVMYSTD---GIGLAAV 50 K +V DPILR+ V+ P+ + + IM ++ L E+ Y G+GL+A Sbjct: 12 KDIVREGDPILRQKTAEVAVPLNQEDHVIMEMMMEYLKNSQDPELAYKYQLRPGVGLSAN 71 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY---QEGCLSIP-DYRADVKR 106 QIG R+ +D + NPKII+ S VY EGCLS+ + + V R Sbjct: 72 QIGEDKRMFAAFFRDEKGEVKELRVFNPKIISHSAAM-VYLPEGEGCLSVDREVKGYVPR 130 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I ++Y D + + G+ + +QHE+DHLNGI+F D +++ Sbjct: 131 YERIKIKYSDEKGEQVEMRLKGIASVIVQHEIDHLNGIMFYDRINK 176 >gi|239815924|ref|YP_002944834.1| peptide deformylase [Variovorax paradoxus S110] gi|239802501|gb|ACS19568.1| peptide deformylase [Variovorax paradoxus S110] Length = 179 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 11/145 (7%) Query: 11 DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--DLQDHA 67 DP L R+++P+ ++D ++L + +M E M + +G GLAA QIGV +LV+ D+ + Sbjct: 11 DPRLLRIAQPVAAFDTDELHLLVRDMFETMLAVNGAGLAAPQIGVDQQLVIFGTDVVNPR 70 Query: 68 HRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P V +NP I D+ EGCLS+P R V R F +RY + Sbjct: 71 YPDAPPVPRTVLLNPVITPIGDEEEEGWEGCLSVPGLRGVVPR--FANIRYTGFDPYGDP 128 Query: 124 I--YADGLLATCLQHELDHLNGILF 146 I A G A +QHE+DHL G L+ Sbjct: 129 IDRVASGFHARVVQHEVDHLLGKLY 153 >gi|289663684|ref|ZP_06485265.1| peptide deformylase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 171 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 8/143 (5%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V D + R Sbjct: 10 DKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASER 68 Query: 70 --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P V N +I S + EGCLSIP RA + R +I R + + Sbjct: 69 YPEAPAVPRTALANAQIEPLSGEMENGWEGCLSIPGLRAVIPRYRYIRYRGVAPDGSPIE 128 Query: 124 IYADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 129 REAEGFHARVVQHEYDHLVGRLY 151 >gi|260834959|ref|XP_002612477.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae] gi|229297854|gb|EEN68486.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae] Length = 188 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 17/155 (10%) Query: 11 DPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61 +PILR + ++ N + +++ +++VM +GL+A Q+GV +++ + Sbjct: 17 NPILRGQALAVDHRNIKSKETQEVLEQLVKVMRKKGAVGLSAPQVGVGLQIIAVECTRKQ 76 Query: 62 -DLQDHAHRK------NPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 DL RK P+ +FINPK+ V+ EGC S+P ++A+V R + + Sbjct: 77 LDLVPQEIRKIREMQEFPLKIFINPKLKVTDYSTVVFPEGCESLPGFQANVPRYYGVNIT 136 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 +D G A LQHE++HL G L+ID Sbjct: 137 GLDREGMPVAWQVTGWPARILQHEVEHLRGDLYID 171 >gi|169827255|ref|YP_001697413.1| peptide deformylase [Lysinibacillus sphaericus C3-41] gi|168991743|gb|ACA39283.1| Peptide deformylase [Lysinibacillus sphaericus C3-41] Length = 192 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 4/112 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DY 100 G GL+A QIGV R+ + +DH +K M+FINPK+++ S + + EGCLS+ Sbjct: 66 GSGLSANQIGVDKRMFAVLFEDHD-QKPEMMFINPKVMSHSLNMIYLPEGEGCLSVNRPV 124 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R I V+ + Q I+ G + +QHE+DHLNGI+F D +++ Sbjct: 125 HGFVPRYERIKVKAYTIDGQEFILSLKGYESIVVQHEIDHLNGIMFYDRINK 176 >gi|21230162|ref|NP_636079.1| peptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769848|ref|YP_244610.1| peptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|188993065|ref|YP_001905075.1| peptide deformylase [Xanthomonas campestris pv. campestris str. B100] gi|25452914|sp|Q8PCN7|DEF1_XANCP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|21111696|gb|AAM40003.1| peptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575180|gb|AAY50590.1| peptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|167734825|emb|CAP53035.1| Peptide deformylase [Xanthomonas campestris pv. campestris] Length = 171 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68 D L RV+ P+ + SD ++ L+ +M E M + G+GLAA QI V +L+V + + Sbjct: 10 DKRLLRVAPPVTNLGSDELHALVADMFETMDAARGVGLAAPQIAVDLQLMVFGFEASERY 69 Query: 69 RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V N +I SD+ EGCLSIP RA + R I + Sbjct: 70 PEAPAVPRTALANVQIEPLSDEMENGWEGCLSIPGLRAVIPRHRVIRYSGFAPDGTPIER 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 EAEGFHARVVQHEYDHLVGRLY 151 >gi|319650481|ref|ZP_08004621.1| Def2 protein [Bacillus sp. 2_A_57_CT2] gi|317397662|gb|EFV78360.1| Def2 protein [Bacillus sp. 2_A_57_CT2] Length = 192 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 16/157 (10%) Query: 11 DPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTD-----------GIGLAAVQIGVLYR 57 DPILR V++ + D LI M + S D GIGL+A QIG+ R Sbjct: 20 DPILREVTKEVTVPLTEEDRGTLIAMMQYLKNSQDPAIAKKYGLRPGIGLSANQIGLNKR 79 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSAFITVRY 114 + + INPKII+ S F EGCLS+ D + V R I V+ Sbjct: 80 MFTAYFTNEKAEPQEYFVINPKIISHSVGVIFLPEGEGCLSVDRDVKGYVPRYERIKVKA 139 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + + G+ A +QHE+DHLNGI+F D ++ Sbjct: 140 HNLEGEEVTLRFKGIPAIIMQHEIDHLNGIMFYDRIN 176 >gi|157692133|ref|YP_001486595.1| peptide deformylase [Bacillus pumilus SAFR-032] gi|157680891|gb|ABV62035.1| peptide deformylase [Bacillus pumilus SAFR-032] Length = 185 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 22/160 (13%) Query: 12 PILRRVSR-----PIEKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYRL 58 P+LR+ + P E+ + ++I+ M E G+GLAA QI + R+ Sbjct: 13 PVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDAEMAEKFGLRPGVGLAAPQINISKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS----IPDYRADVKRSAFITV 112 + + +D + NP+I++ S + EGCLS IP + V R I V Sbjct: 73 IAVHCEDEDGEEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGF---VPRYQKIRV 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + I G A QHE+DHLNGI+F DH+ + Sbjct: 130 KATTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169 >gi|254373927|ref|ZP_04989409.1| polypeptide deformylase [Francisella novicida GA99-3548] gi|151571647|gb|EDN37301.1| polypeptide deformylase [Francisella novicida GA99-3548] Length = 210 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 16/150 (10%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I S +I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 22 NKVLYQKCKPVADIQSAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS + + R K + + + Y N Sbjct: 80 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 137 Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148 + I A D + A QHE +HL G +++D Sbjct: 138 GEKITAKLDSIAAVIFQHEFNHLLGSVYVD 167 >gi|16800112|ref|NP_470380.1| peptide deformylase [Listeria innocua Clip11262] gi|23396547|sp|Q92CX8|DEF_LISIN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|16413502|emb|CAC96274.1| lin1043 [Listeria innocua Clip11262] gi|313619530|gb|EFR91206.1| peptide deformylase [Listeria innocua FSL S4-378] gi|313624273|gb|EFR94321.1| peptide deformylase [Listeria innocua FSL J1-023] Length = 183 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 22/160 (13%) Query: 12 PILRRVSRPI--------EKINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYRL 58 P LR V+ + +K+ D++ + D L Y G+G+AA Q+ V R Sbjct: 13 PALREVATEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQLAVTKRF 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112 + I + D R V NPKI + S + EGCLS+ P Y V RS +T+ Sbjct: 73 LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D N + G A +QHE+DHLNG++F DH+++ Sbjct: 130 DAFDENGTPLKLRFKGYPAIVVQHEIDHLNGVMFYDHINK 169 >gi|322392329|ref|ZP_08065790.1| peptide deformylase [Streptococcus peroris ATCC 700780] gi|321144864|gb|EFX40264.1| peptide deformylase [Streptococcus peroris ATCC 700780] Length = 141 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 8/130 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L +VSRP + + + + + L+ T +GLAA IGV R+++ +L PM Sbjct: 17 LSQVSRPASQEDLPLAKDLQDTLQANKET-CVGLAANMIGVQKRVIIFNL-----GMIPM 70 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP + +F + +EGCLS+ R R ITV Y D + Q Q I G A Sbjct: 71 VMFNPVLQSFEGPYET-EEGCLSLAGVRP-TTRYEKITVSYRDIHWQEQTITLTGFPAQI 128 Query: 134 LQHELDHLNG 143 QHELDHL G Sbjct: 129 CQHELDHLEG 138 >gi|89255883|ref|YP_513245.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115314370|ref|YP_763093.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|254367244|ref|ZP_04983272.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] gi|290953373|ref|ZP_06557994.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|295313377|ref|ZP_06803985.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|89143714|emb|CAJ78913.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115129269|gb|ABI82456.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|134253062|gb|EBA52156.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] Length = 211 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 16/150 (10%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 23 NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS + + R K + + + Y N Sbjct: 81 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 138 Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148 + I D + A QHE +HL G +++D Sbjct: 139 GEKITGKLDSIAAVIFQHEFNHLLGSVYVD 168 >gi|156501866|ref|YP_001427931.1| peptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009647|ref|ZP_02274578.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC200] gi|254368721|ref|ZP_04984734.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp. holarctica FSC022] gi|156252469|gb|ABU60975.1| polypeptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121642|gb|EDO65812.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp. holarctica FSC022] Length = 210 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 16/150 (10%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 22 NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS + + R K + + + Y N Sbjct: 80 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 137 Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148 + I D + A QHE +HL G +++D Sbjct: 138 GEKITGKLDSIAAVIFQHEFNHLLGSVYVD 167 >gi|317495963|ref|ZP_07954325.1| polypeptide deformylase [Gemella moribillum M424] gi|316913867|gb|EFV35351.1| polypeptide deformylase [Gemella moribillum M424] Length = 184 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 33 DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI--NPKIITFS--DDFS 88 D E + GIGLAA QI V R++ + + D + +N + + NPKII+ S + Sbjct: 47 DEKAEKLGLKPGIGLAAPQINVSKRMIAVHIPDDENPENTVSYALYNPKIISNSVAKCYL 106 Query: 89 VYQEGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 EGCLS+ + + V R + I V + N + + L + C QHE+DHLNGI+F Sbjct: 107 AGGEGCLSVDKEIQGYVPRYSKIKVVGYNENDEKITLTLTDLPSICFQHEIDHLNGIMFY 166 Query: 148 DHLSR 152 DH+++ Sbjct: 167 DHINK 171 >gi|307609411|emb|CBW98900.1| polypeptide deformylase [Legionella pneumophila 130b] Length = 200 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 20/142 (14%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKNPMVF-----I 76 +N + +LI+ M + +Y+ G+GLAA Q+ +++ + + + A R N +F I Sbjct: 28 LNREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRDNAKIFPMHILI 87 Query: 77 NPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMD--CNAQHQIIYADGL 129 NP DF EGC S+ V R I ++Y D NA QI +G Sbjct: 88 NPSYEPLPHTRIISDF----EGCYSVSSKAGKVPRYDEIRLKYYDEEGNAHQQI--ENGF 141 Query: 130 LATCLQHELDHLNGILFIDHLS 151 A LQHE+DHLNG+L D L+ Sbjct: 142 YARVLQHEIDHLNGVLITDRLT 163 >gi|154685863|ref|YP_001421024.1| peptide deformylase [Bacillus amyloliquefaciens FZB42] gi|154351714|gb|ABS73793.1| DefB [Bacillus amyloliquefaciens FZB42] Length = 184 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----I 97 G+GLAA Q V R++ + +D NPKI++ S + S EGCLS I Sbjct: 58 GVGLAAPQTDVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPI 117 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 P Y V R A I V+ + + I G A QHE+DHLNG++F DH+ + Sbjct: 118 PGY---VPRYARIRVKAVTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDK 169 >gi|21282703|ref|NP_645791.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2] gi|49483254|ref|YP_040478.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252] gi|49485929|ref|YP_043150.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476] gi|57651700|ref|YP_185964.1| peptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|82750701|ref|YP_416442.1| peptide deformylase [Staphylococcus aureus RF122] gi|87161441|ref|YP_493689.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194790|ref|YP_499587.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221169|ref|YP_001331991.1| peptide deformylase [Staphylococcus aureus subsp. aureus str. Newman] gi|161509274|ref|YP_001574933.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140509|ref|ZP_03565002.1| peptide deformylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257425143|ref|ZP_05601569.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427806|ref|ZP_05604204.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430441|ref|ZP_05606823.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433143|ref|ZP_05609501.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus E1410] gi|257436042|ref|ZP_05612089.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|258423591|ref|ZP_05686481.1| polypeptide deformylase [Staphylococcus aureus A9635] gi|258451962|ref|ZP_05699978.1| polypeptide deformylase 2 [Staphylococcus aureus A5948] gi|262048678|ref|ZP_06021560.1| peptide deformylase [Staphylococcus aureus D30] gi|262052225|ref|ZP_06024431.1| peptide deformylase [Staphylococcus aureus 930918-3] gi|282903640|ref|ZP_06311528.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|282905409|ref|ZP_06313264.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908381|ref|ZP_06316212.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910668|ref|ZP_06318471.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913866|ref|ZP_06321653.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282916341|ref|ZP_06324103.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|282918790|ref|ZP_06326525.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282923912|ref|ZP_06331588.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|282925275|ref|ZP_06332932.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|283770153|ref|ZP_06343045.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] gi|283957835|ref|ZP_06375286.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|284024016|ref|ZP_06378414.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132] gi|293500903|ref|ZP_06666754.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|293509859|ref|ZP_06668568.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|293526445|ref|ZP_06671130.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|294848080|ref|ZP_06788827.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|295427579|ref|ZP_06820211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|39930904|sp|Q8NX78|DEF_STAAW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56748622|sp|Q6GAC3|DEF_STAAS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56748624|sp|Q6GHZ4|DEF_STAAR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71153335|sp|Q5HGZ3|DEF_STAAC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21204141|dbj|BAB94839.1| pdf1 [Staphylococcus aureus subsp. aureus MW2] gi|49241383|emb|CAG40067.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|49244372|emb|CAG42800.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus MSSA476] gi|57285886|gb|AAW37980.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|82656232|emb|CAI80645.1| peptide deformylase [Staphylococcus aureus RF122] gi|87127415|gb|ABD21929.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202348|gb|ABD30158.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373969|dbj|BAF67229.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus str. Newman] gi|160368083|gb|ABX29054.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257272119|gb|EEV04251.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274647|gb|EEV06134.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278569|gb|EEV09188.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257281236|gb|EEV11373.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus E1410] gi|257284324|gb|EEV14444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|257846292|gb|EEV70316.1| polypeptide deformylase [Staphylococcus aureus A9635] gi|257860177|gb|EEV83009.1| polypeptide deformylase 2 [Staphylococcus aureus A5948] gi|259159896|gb|EEW44934.1| peptide deformylase [Staphylococcus aureus 930918-3] gi|259163134|gb|EEW47694.1| peptide deformylase [Staphylococcus aureus D30] gi|269940586|emb|CBI48965.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus TW20] gi|282313884|gb|EFB44276.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|282316600|gb|EFB46974.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282319781|gb|EFB50129.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|282321934|gb|EFB52258.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282325273|gb|EFB55582.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282328046|gb|EFB58328.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330701|gb|EFB60215.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282592551|gb|EFB97561.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|282595258|gb|EFC00222.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|283460300|gb|EFC07390.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] gi|283789984|gb|EFC28801.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920517|gb|EFD97580.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|291095908|gb|EFE26169.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|291467309|gb|EFF09826.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|294824880|gb|EFG41302.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|295127937|gb|EFG57571.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|298694326|gb|ADI97548.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED133] gi|302332701|gb|ADL22894.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus JKD6159] gi|302750915|gb|ADL65092.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315193760|gb|EFU24155.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS00] gi|315196121|gb|EFU26478.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS01] gi|323440640|gb|EGA98350.1| peptide deformylase [Staphylococcus aureus O11] gi|323441667|gb|EGA99313.1| peptide deformylase [Staphylococcus aureus O46] gi|329313759|gb|AEB88172.1| Peptide deformylase [Staphylococcus aureus subsp. aureus T0131] gi|329728776|gb|EGG65197.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193] gi|329730791|gb|EGG67170.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189] Length = 183 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100 G+GLAA QI + R++ + + D K+ + +NPKI++ S + + EGCLS+ D Sbjct: 58 GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDN 117 Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A V R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 118 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|299116829|emb|CBN74941.1| chloroplast peptide deformylase (Partial) [Ectocarpus siliculosus] Length = 209 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 2/109 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P P LR + IE + D+ L +M ++MY+ G+GLAA Q+GV RL+V + + A Sbjct: 98 YPHPALRAENDEIEVFDDDVKKLARDMFKIMYAAKGVGLAAPQVGVNKRLMVFNPEGDAK 157 Query: 69 RK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + +NPKI+ +EGCLS P K + T+RY + Sbjct: 158 NWLDEAILVNPKIVASGKGRITAEEGCLSFPGMEGK-KDWSTPTMRYSN 205 >gi|159026645|emb|CAO86579.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 181 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 6/117 (5%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 +PIL++ + I+ + +SD NLID+++ + + G+G+AA Q+ RL ++ + Sbjct: 24 NPILQQKAPEIDNLLDSDCQNLIDSLITTVQAAHGVGIAAPQVARSLRLFIVASGPNPRY 83 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 A +P INP+I+ S++ EGCLS+P++R V R +I V Y N + Sbjct: 84 PDAPIMSPTAMINPRILQVSEEMVKGWEGCLSVPNWRGFVPRHQWIEVSYYGRNGRE 140 >gi|107028797|ref|YP_625892.1| peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116690044|ref|YP_835667.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|170733379|ref|YP_001765326.1| peptide deformylase [Burkholderia cenocepacia MC0-3] gi|105897961|gb|ABF80919.1| Peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116648133|gb|ABK08774.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|169816621|gb|ACA91204.1| peptide deformylase [Burkholderia cenocepacia MC0-3] Length = 177 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L +++P+E+ ++ ++ ++ +M E M+ +G GLAA QIG+ ++++ ++ Sbjct: 10 DPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGNNNRY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INPK+ D EGCLS+P R V R A + D Q Sbjct: 70 PDAPPVPETVLINPKVEYLPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGQKIDR 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ ++ R T+ Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165 >gi|15924081|ref|NP_371615.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926677|ref|NP_374210.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315] gi|148267584|ref|YP_001246527.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9] gi|150393639|ref|YP_001316314.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1] gi|156979414|ref|YP_001441673.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu3] gi|253316344|ref|ZP_04839557.1| peptide deformylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005878|ref|ZP_05144479.2| peptide deformylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795178|ref|ZP_05644157.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|258407113|ref|ZP_05680262.1| peptide deformylase [Staphylococcus aureus A9763] gi|258421795|ref|ZP_05684716.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|258436159|ref|ZP_05689142.1| peptide deformylase [Staphylococcus aureus A9299] gi|258443352|ref|ZP_05691695.1| peptide deformylase [Staphylococcus aureus A8115] gi|258444962|ref|ZP_05693279.1| peptide deformylase [Staphylococcus aureus A6300] gi|258449863|ref|ZP_05697961.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224] gi|258454962|ref|ZP_05702925.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937] gi|269202702|ref|YP_003281971.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|282894118|ref|ZP_06302349.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|282928613|ref|ZP_06336210.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|295405895|ref|ZP_06815704.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|296276492|ref|ZP_06858999.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1] gi|297246365|ref|ZP_06930209.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|56749813|sp|P68825|DEF_STAAM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56749814|sp|P68826|DEF_STAAU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56749815|sp|P99077|DEF_STAAN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22219285|pdb|1LQW|A Chain A, Crystal Structure Of S.Aureus Peptide Deformylase gi|22219286|pdb|1LQW|B Chain B, Crystal Structure Of S.Aureus Peptide Deformylase gi|75766236|pdb|2AI9|A Chain A, S.Aureus Polypeptide Deformylase gi|75766237|pdb|2AI9|B Chain B, S.Aureus Polypeptide Deformylase gi|9965494|gb|AAG02249.1| peptide deformylase Pdf1 [Staphylococcus aureus] gi|13700892|dbj|BAB42188.1| pdf1 [Staphylococcus aureus subsp. aureus N315] gi|14246861|dbj|BAB57253.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp. aureus Mu50] gi|147740653|gb|ABQ48951.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9] gi|149946091|gb|ABR52027.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1] gi|156721549|dbj|BAF77966.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp. aureus Mu3] gi|257789150|gb|EEV27490.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|257841268|gb|EEV65713.1| peptide deformylase [Staphylococcus aureus A9763] gi|257842128|gb|EEV66556.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|257848848|gb|EEV72833.1| peptide deformylase [Staphylococcus aureus A9299] gi|257851442|gb|EEV75381.1| peptide deformylase [Staphylococcus aureus A8115] gi|257856084|gb|EEV79002.1| peptide deformylase [Staphylococcus aureus A6300] gi|257856783|gb|EEV79686.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224] gi|257862842|gb|EEV85607.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937] gi|262074992|gb|ACY10965.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|282589652|gb|EFB94738.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|282763604|gb|EFC03733.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|285816772|gb|ADC37259.1| Peptide deformylase [Staphylococcus aureus 04-02981] gi|294969330|gb|EFG45350.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|297176731|gb|EFH35991.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|312829485|emb|CBX34327.1| peptide deformylase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130323|gb|EFT86310.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS03] gi|329725200|gb|EGG61689.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172] Length = 183 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100 G+GLAA QI + R++ + + D K+ + +NPKI++ S + + EGCLS+ D Sbjct: 58 GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDN 117 Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A V R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 118 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|329767966|ref|ZP_08259477.1| peptide deformylase 2 [Gemella haemolysans M341] gi|328838451|gb|EGF88059.1| peptide deformylase 2 [Gemella haemolysans M341] Length = 184 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 5/125 (4%) Query: 33 DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI--NPKIITFSDD--FS 88 D E + GIGLAA QI V R++ + + D ++ + + NPKII+ S + Sbjct: 47 DEKAEKLGLKPGIGLAAPQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSAAKCYL 106 Query: 89 VYQEGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 EGCLS+ + + V R + I V + N + + L A C QHE+DHLNG++F Sbjct: 107 AGGEGCLSVDKEIKGYVPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFY 166 Query: 148 DHLSR 152 DH+++ Sbjct: 167 DHINK 171 >gi|283470302|emb|CAQ49513.1| peptide deformylase [Staphylococcus aureus subsp. aureus ST398] Length = 183 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100 G+GLAA QI + R++ + + D K+ + +NPKI++ S + + EGCLS+ D Sbjct: 58 GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDN 117 Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A V R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 118 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|326438101|gb|EGD83671.1| hypothetical protein PTSG_12149 [Salpingoeca sp. ATCC 50818] Length = 214 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 18/157 (11%) Query: 12 PILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-------I 61 P+LR + PI++ + I NL+D++ + G GL A QIG +L V I Sbjct: 22 PVLREKAAPIQRSDITDGSIRNLVDSLSARLREDKGFGLCAPQIGESLQLFVMEVTPDMI 81 Query: 62 DLQDHAH-------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +L+ + R P+ I + + S ++E CLSIP Y A V R I + Sbjct: 82 ELETNFRDIKMLDMRPVPLTAIANPRLKYGKKMSTHRESCLSIPGYSAHVTRPVDIHLTG 141 Query: 115 MDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHL 150 + + A G A +QHE+DHLNG L+ D + Sbjct: 142 LCAVTGTDVSVALSGWTARIVQHEVDHLNGCLYTDKM 178 >gi|56707552|ref|YP_169448.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670023|ref|YP_666580.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] gi|224456620|ref|ZP_03665093.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604044|emb|CAG45036.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320356|emb|CAL08419.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] Length = 211 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 16/150 (10%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 23 NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS + + R K + + + Y N Sbjct: 81 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 138 Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148 + I D + A QHE +HL G +++D Sbjct: 139 GEKITGKLDSIAAIIFQHEFNHLLGSVYVD 168 >gi|94502278|ref|ZP_01308760.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451171|gb|EAT14114.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 117 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 53/90 (58%) Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 VFINP II + +EGCLSIP+ ++KR I + Y D N + + +GLL+ Sbjct: 1 VFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKKYKQHFNGLLSII 60 Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMS 163 +QHE DH+ G LFID++ LK +I K + Sbjct: 61 IQHEYDHIEGKLFIDNIFILKNILIKKNFN 90 >gi|253731702|ref|ZP_04865867.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733674|ref|ZP_04867839.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|297208271|ref|ZP_06924701.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297591467|ref|ZP_06950105.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|300912348|ref|ZP_07129791.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|304381351|ref|ZP_07364004.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253724516|gb|EES93245.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728374|gb|EES97103.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|296887010|gb|EFH25913.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576353|gb|EFH95069.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|300886594|gb|EFK81796.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|304340334|gb|EFM06275.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438532|gb|ADQ77603.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60] gi|320141093|gb|EFW32940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143150|gb|EFW34940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177] Length = 207 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100 G+GLAA QI + R++ + + D K+ + +NPKI++ S + + EGCLS+ D Sbjct: 82 GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDN 141 Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A V R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 142 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 194 >gi|134302514|ref|YP_001122484.1| peptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|254370075|ref|ZP_04986081.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874370|ref|ZP_05247080.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|134050291|gb|ABO47362.1| polypeptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|151568319|gb|EDN33973.1| hypothetical protein FTBG_01170 [Francisella tularensis subsp. tularensis FSC033] gi|254840369|gb|EET18805.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158706|gb|ADA78097.1| peptide deformylase [Francisella tularensis subsp. tularensis NE061598] Length = 210 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 16/150 (10%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 22 NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS + + R K + + + Y N Sbjct: 80 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 137 Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148 + I D + A QHE +HL G +++D Sbjct: 138 GEKITGKLDSIAAIIFQHEFNHLLGSVYVD 167 >gi|54113563|gb|AAV29415.1| NT02FT1681 [synthetic construct] Length = 211 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 16/150 (10%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 23 NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS + + R K + + + Y N Sbjct: 81 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 138 Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148 + I D + A QHE +HL G +++D Sbjct: 139 GEKITGKLDSIAAIIFQHEFNHLLGSVYVD 168 >gi|166713383|ref|ZP_02244590.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 171 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68 D L RV+ + + S ++ L+ +M E M + G+GLAA QI V +L+V + + Sbjct: 10 DKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERY 69 Query: 69 RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P V N +I S++ EGCLSIP RA + R +I R + Sbjct: 70 PEAPAVPLTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIER 129 Query: 125 YADGLLATCLQHELDHLNGILF 146 A+G A +QHE DHL G L+ Sbjct: 130 EAEGFHARVVQHEYDHLVGRLY 151 >gi|239636405|ref|ZP_04677407.1| peptide deformylase [Staphylococcus warneri L37603] gi|239597760|gb|EEQ80255.1| peptide deformylase [Staphylococcus warneri L37603] Length = 183 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100 G+GLAA QI V R++ + L D + K+ + +NPK++++S + + EGCLS+ + Sbjct: 58 GVGLAAPQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDEN 117 Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R +T++ D + + G A QHE+DHLNGI+F DH+ Sbjct: 118 IPGLVHRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYDHI 168 >gi|313638473|gb|EFS03653.1| peptide deformylase [Listeria seeligeri FSL S4-171] Length = 183 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 28 IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 ++N D L Y G+G+AA Q+ V R + I + D R V NPKI + S Sbjct: 41 LINSQDEELAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQ 100 Query: 87 FSVYQ--EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 + EGCLS+ P Y V RS +T+ D N + G A +QHE+DH Sbjct: 101 QACLSGGEGCLSVDREVPGY---VVRSERVTIDAFDENGTPLKLRFKGYPAIVVQHEIDH 157 Query: 141 LNGILFIDHLS 151 LNGI+F DH++ Sbjct: 158 LNGIMFYDHIN 168 >gi|289434312|ref|YP_003464184.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170556|emb|CBH27096.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633912|gb|EFS00628.1| peptide deformylase [Listeria seeligeri FSL N1-067] Length = 183 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 28 IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 ++N D L Y G+G+AA Q+ V R + I + D R V NPKI + S Sbjct: 41 LINSQDEELAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQ 100 Query: 87 FSVYQ--EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 + EGCLS+ P Y V RS +T+ D N + G A +QHE+DH Sbjct: 101 QACLSGGEGCLSVDREVPGY---VVRSERVTIDAFDENGTPLKLRFKGYPAIVVQHEIDH 157 Query: 141 LNGILFIDHLS 151 LNGI+F DH++ Sbjct: 158 LNGIMFYDHIN 168 >gi|332669559|ref|YP_004452567.1| peptide deformylase [Cellulomonas fimi ATCC 484] gi|332338597|gb|AEE45180.1| Peptide deformylase [Cellulomonas fimi ATCC 484] Length = 321 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 12/158 (7%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 K P+V P+LR + P + + ++ +L+ M M++ G+GLAA QIG+ + V Sbjct: 30 KVPIVQAGHPVLRAQALPYDGQLADDELESLVHVMRATMHAAPGVGLAAPQIGLPVAVAV 89 Query: 61 IDLQD-------HAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 ++ + P+ F +NP+ D+ + EGCLS+ Y+A V R + Sbjct: 90 LEDSGPPDGDVAQVRERAPLEFRVLVNPRYAAVDDERRAFYEGCLSVVGYQAVVARPRRV 149 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + D + G A +QHE DHL G+L++D Sbjct: 150 HLVGADERGRPLDEVLTGWPARIVQHETDHLGGVLYLD 187 >gi|289551097|ref|YP_003472001.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] gi|289180629|gb|ADC87874.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] Length = 183 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITFSDDFSV--YQEGCLSI-PD 99 G+GLAA QI + +++ + L D + R ++ +NPK++++S ++ EGCLS+ + Sbjct: 58 GVGLAAPQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVVSYSVQYAYLPTGEGCLSVDKN 117 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R +TV+ D + + + G A +QHE+DHLNGI+F DH+ Sbjct: 118 IPGLVHRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHI 168 >gi|224510906|pdb|3G6N|A Chain A, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser gi|224510907|pdb|3G6N|B Chain B, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser Length = 191 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 34/168 (20%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P LR V++ + ++ + ++L MLE + ++ G+GLAA Q+ + R Sbjct: 16 NPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKR 75 Query: 58 LVVIDLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRAD 103 ++ + H +P V NPKI++ S D EGCLS+ P Y Sbjct: 76 IIAV----HVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGY--- 128 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 129 VVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIN 176 >gi|220702375|pdb|3CMD|A Chain A, Crystal Structure Of Peptide Deformylase From Vre-E.Faecium gi|220702376|pdb|3CMD|B Chain B, Crystal Structure Of Peptide Deformylase From Vre-E.Faecium Length = 196 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 34/168 (20%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P LR V++ + ++ + ++L MLE + ++ G+GLAA Q+ + R Sbjct: 21 NPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKR 80 Query: 58 LVVIDLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRAD 103 ++ + H +P V NPKI++ S D EGCLS+ P Y Sbjct: 81 IIAV----HVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGY--- 133 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 134 VVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIN 181 >gi|317129375|ref|YP_004095657.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522] gi|315474323|gb|ADU30926.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522] Length = 193 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 16/156 (10%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYRL 58 P LR+ + + N + ++ NM++ +++S D G+G+AA QI V R+ Sbjct: 13 PTLRKRAEEVNLPANEEDTAILQNMIDFLIHSQDPEIAEKYDLRPGVGIAAPQINVSKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRYM 115 + + + DH + NPKII+ S + + + EGCLS+ + V R A I V Sbjct: 73 IAVRVDDHNENLIEVGLFNPKIISHSIETTHLENGEGCLSVDREVPGIVPRYARIKVEGT 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + + GL A QHE+DHLNGI+F D + Sbjct: 133 SIDGEKITLKLKGLPAIVFQHEIDHLNGIMFYDRIE 168 >gi|69248512|ref|ZP_00604761.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257878822|ref|ZP_05658475.1| peptide deformylase [Enterococcus faecium 1,230,933] gi|257881459|ref|ZP_05661112.1| peptide deformylase [Enterococcus faecium 1,231,502] gi|257885731|ref|ZP_05665384.1| peptide deformylase [Enterococcus faecium 1,231,501] gi|257890681|ref|ZP_05670334.1| peptide deformylase [Enterococcus faecium 1,231,410] gi|258615107|ref|ZP_05712877.1| peptide deformylase [Enterococcus faecium DO] gi|260558387|ref|ZP_05830583.1| peptide deformylase [Enterococcus faecium C68] gi|261207094|ref|ZP_05921783.1| peptide deformylase [Enterococcus faecium TC 6] gi|289565904|ref|ZP_06446344.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|293556871|ref|ZP_06675432.1| peptide deformylase [Enterococcus faecium E1039] gi|293563619|ref|ZP_06678063.1| peptide deformylase [Enterococcus faecium E1162] gi|293567826|ref|ZP_06679167.1| peptide deformylase [Enterococcus faecium E1071] gi|294614601|ref|ZP_06694505.1| peptide deformylase [Enterococcus faecium E1636] gi|294618483|ref|ZP_06698047.1| peptide deformylase [Enterococcus faecium E1679] gi|294621220|ref|ZP_06700405.1| peptide deformylase [Enterococcus faecium U0317] gi|314938849|ref|ZP_07846120.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|314943654|ref|ZP_07850408.1| peptide deformylase [Enterococcus faecium TX0133C] gi|314949089|ref|ZP_07852449.1| peptide deformylase [Enterococcus faecium TX0082] gi|314952182|ref|ZP_07855200.1| peptide deformylase [Enterococcus faecium TX0133A] gi|314991844|ref|ZP_07857301.1| peptide deformylase [Enterococcus faecium TX0133B] gi|314996555|ref|ZP_07861592.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|29650280|gb|AAO88058.1| peptide deformylase [Enterococcus faecium] gi|68194406|gb|EAN08912.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257813050|gb|EEV41808.1| peptide deformylase [Enterococcus faecium 1,230,933] gi|257817117|gb|EEV44445.1| peptide deformylase [Enterococcus faecium 1,231,502] gi|257821587|gb|EEV48717.1| peptide deformylase [Enterococcus faecium 1,231,501] gi|257827041|gb|EEV53667.1| peptide deformylase [Enterococcus faecium 1,231,410] gi|260075561|gb|EEW63867.1| peptide deformylase [Enterococcus faecium C68] gi|260078722|gb|EEW66424.1| peptide deformylase [Enterococcus faecium TC 6] gi|289162277|gb|EFD10137.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|291589411|gb|EFF21218.1| peptide deformylase [Enterococcus faecium E1071] gi|291592503|gb|EFF24108.1| peptide deformylase [Enterococcus faecium E1636] gi|291595240|gb|EFF26569.1| peptide deformylase [Enterococcus faecium E1679] gi|291599216|gb|EFF30248.1| peptide deformylase [Enterococcus faecium U0317] gi|291600955|gb|EFF31246.1| peptide deformylase [Enterococcus faecium E1039] gi|291604419|gb|EFF33909.1| peptide deformylase [Enterococcus faecium E1162] gi|313589296|gb|EFR68141.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|313593549|gb|EFR72394.1| peptide deformylase [Enterococcus faecium TX0133B] gi|313595714|gb|EFR74559.1| peptide deformylase [Enterococcus faecium TX0133A] gi|313597691|gb|EFR76536.1| peptide deformylase [Enterococcus faecium TX0133C] gi|313641860|gb|EFS06440.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|313644505|gb|EFS09085.1| peptide deformylase [Enterococcus faecium TX0082] Length = 187 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 34/168 (20%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P LR V++ + ++ + ++L MLE + ++ G+GLAA Q+ + R Sbjct: 12 NPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRAD 103 ++ + H +P V NPKI++ S D EGCLS+ P Y Sbjct: 72 IIAV----HVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGY--- 124 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 125 VVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIN 172 >gi|330686209|gb|EGG97823.1| peptide deformylase [Staphylococcus epidermidis VCU121] Length = 164 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100 G+GLAA QI V R++ + L D + K+ + +NPK++++S + + EGCLS+ + Sbjct: 39 GVGLAAPQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDEN 98 Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R +T++ D + + G A QHE+DHLNGI+F DH+ Sbjct: 99 IPGLVHRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYDHI 149 >gi|256847494|ref|ZP_05552940.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] gi|256716158|gb|EEU31133.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] Length = 136 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 17/147 (11%) Query: 4 KPLVIFPDPILRRVSRPIE----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 KP +I IL +VS P + KI D+++ + + +GLAA IG+ R++ Sbjct: 3 KP-IIHDQNILTKVSTPAQLSDVKIAQDLLDTLQ-----AHQESCVGLAANMIGIHKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I + + +NP+II + +EGCLS+ RA R ITV++MD Sbjct: 57 AITI-----GPARVAMLNPEIINHQQPYQT-EEGCLSLNGQRA-TTRYQTITVQFMDIQG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q I +G A QHE+DH NGIL Sbjct: 110 HRQQITLNGFPAQIAQHEIDHCNGILI 136 >gi|242373312|ref|ZP_04818886.1| peptide deformylase [Staphylococcus epidermidis M23864:W1] gi|242349022|gb|EES40624.1| peptide deformylase [Staphylococcus epidermidis M23864:W1] Length = 183 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99 G+GLAA QI V R++ + L D + K+ + +NPK+++ S + + EGCLS+ + Sbjct: 58 GVGLAAPQINVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSHSVQEAYLPTGEGCLSVDEN 117 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R +T++ D + + G A QHE+DHLNG++F DH+ Sbjct: 118 IPGLVHRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDHI 168 >gi|225352153|ref|ZP_03743176.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157400|gb|EEG70739.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 149 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 6/150 (4%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +LR PI++I + +L+ ++L+ + GL+A QIGV R ++ Sbjct: 1 MLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNINGKI----- 55 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 +NP ++ + EGCLS+P +R+ + VR +D + ++ G++ Sbjct: 56 GYVLNP-VLEETCGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLEGKTVVLEGRGIMGR 114 Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKM 162 LQHE DHLNG +++D L + +R + M Sbjct: 115 MLQHETDHLNGHVYLDRLEKEERREAMRYM 144 >gi|148360734|ref|YP_001251941.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|296106200|ref|YP_003617900.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|148282507|gb|ABQ56595.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|295648101|gb|ADG23948.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] Length = 200 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 21/159 (13%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKNPMVF-----I 76 +N + +LI+ M + +Y+ G+GLAA Q+ +++ + + + A R N +F I Sbjct: 28 LNREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRDNAKIFPMHILI 87 Query: 77 NPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYADGLL 130 NP DF EGC S+ V R I ++Y D HQ I +G Sbjct: 88 NPNYEPLPHTRIISDF----EGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQI-ENGFY 142 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A LQHE+DHLNG+L D RL D + + +++ +R Sbjct: 143 ARVLQHEIDHLNGVLITD---RLTPDCVQGTIEEMMTIR 178 >gi|228475040|ref|ZP_04059768.1| peptide deformylase [Staphylococcus hominis SK119] gi|314936623|ref|ZP_07843970.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] gi|228271025|gb|EEK12413.1| peptide deformylase [Staphylococcus hominis SK119] gi|313655242|gb|EFS18987.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] Length = 162 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+L + ++ I + ++ L+ ++ + +YS + L+A QIGV R+ + Sbjct: 1 MAIKKLVPSTHPVLFKKAKKITTFDENLKRLLLDIEDTLYSEEASALSAPQIGVSQRVAM 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + INPKI T S++ + EG +++P+ +V+RS ITV D Sbjct: 61 IDME----AEGLLQLINPKIKTESNEKIIDLEGSVNLPNVFGEVERSKMITVEANDLEGH 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + A +A + H +D L+GI F + Sbjct: 117 EIELTAYDDVARMILHIIDQLDGIPFTE 144 >gi|227550841|ref|ZP_03980890.1| peptide deformylase [Enterococcus faecium TX1330] gi|257887905|ref|ZP_05667558.1| peptide deformylase [Enterococcus faecium 1,141,733] gi|257893294|ref|ZP_05672947.1| peptide deformylase [Enterococcus faecium 1,231,408] gi|257896477|ref|ZP_05676130.1| peptide deformylase [Enterococcus faecium Com12] gi|293379255|ref|ZP_06625401.1| peptide deformylase [Enterococcus faecium PC4.1] gi|227179939|gb|EEI60911.1| peptide deformylase [Enterococcus faecium TX1330] gi|257823959|gb|EEV50891.1| peptide deformylase [Enterococcus faecium 1,141,733] gi|257829673|gb|EEV56280.1| peptide deformylase [Enterococcus faecium 1,231,408] gi|257833042|gb|EEV59463.1| peptide deformylase [Enterococcus faecium Com12] gi|292642051|gb|EFF60215.1| peptide deformylase [Enterococcus faecium PC4.1] Length = 187 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 34/168 (20%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P LR V+ + ++ + ++L MLE + ++ G+GLAA Q+ + R Sbjct: 12 NPTLREVAEEVSLPLSEEDLSLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRAD 103 ++ + H +P V NPKI++ S D EGCLS+ P Y Sbjct: 72 IIAV----HVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGY--- 124 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 125 VVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIN 172 >gi|85860534|ref|YP_462736.1| peptide deformylase [Syntrophus aciditrophicus SB] gi|85723625|gb|ABC78568.1| peptide deformylase [Syntrophus aciditrophicus SB] Length = 189 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 73/148 (49%), Gaps = 16/148 (10%) Query: 13 ILRRVSR----PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----D 62 ILR SR P+ + D I L+D LE D +GLAA QIG+ R+V+ D Sbjct: 23 ILRTPSRDLPIPLSREARDQIQTLVDAFLE---RDDALGLAAPQIGINRRIVIFRNKGFD 79 Query: 63 LQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + + K+ + INP+I + EGCLS P + +V R + VR D + Sbjct: 80 EEGWSKKEKDYDLLINPRITQTRGELVKGAEGCLSCPSIQVEVNRFPEVKVRAFDRHGNR 139 Query: 122 -QIIYADGLLATCLQHELDHLNGILFID 148 YAD LA QHELDHL G L +D Sbjct: 140 ISKRYAD-FLARVAQHELDHLEGKLIVD 166 >gi|257468433|ref|ZP_05632527.1| hypothetical protein FulcA4_03769 [Fusobacterium ulcerans ATCC 49185] gi|317062699|ref|ZP_07927184.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185] gi|313688375|gb|EFS25210.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185] Length = 159 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 81/151 (53%), Gaps = 14/151 (9%) Query: 2 VKKPLVIFPDPILRRVSRP-----IEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55 +K+ +++ + L ++S P IE + S + +L D +++ G +AA QIGV Sbjct: 1 MKREILLLGNEELYQISEPVKPDEIETLKSVVQDLHDTLMDFREKYHAGRAIAAPQIGVK 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRY 114 RL+ + + P+VFINP ++ F D + + C+S P+ V R ++Y Sbjct: 61 KRLLYMFID------KPVVFINP-VLEFPDNEMMEVLDDCMSFPNLLVKVMRHKRCRIKY 113 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +D + + Q++ +G L+ LQHE DHL+GIL Sbjct: 114 LDMDWKEQVMSLEGDLSELLQHEFDHLDGIL 144 >gi|212715793|ref|ZP_03323921.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM 16992] gi|212661160|gb|EEB21735.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM 16992] Length = 149 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 6/143 (4%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +LR PI++I + +L+ ++L+ + GL+A QIGV R ++ Sbjct: 1 MLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVGLRAFSYNID------GK 54 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + ++ ++ + EGCLS+P +R+ + VR +D + + ++ G++ Sbjct: 55 IGYVLNPVLEETSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGKTVVLEGHGIMGR 114 Query: 133 CLQHELDHLNGILFIDHLSRLKR 155 LQHE DHL+G +++D L + +R Sbjct: 115 MLQHETDHLDGHVYLDRLEKEER 137 >gi|302870584|ref|YP_003839221.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315506821|ref|YP_004085708.1| transcriptional regulator, xre family [Micromonospora sp. L5] gi|302573443|gb|ADL49645.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315413440|gb|ADU11557.1| transcriptional regulator, XRE family [Micromonospora sp. L5] Length = 510 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 2/110 (1%) Query: 42 TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 + G+GLAA Q+G+ + ++ D A +P+V +NP+++ + + EGCLS D+R Sbjct: 383 SKGVGLAAPQLGIGWSAALVRPADRA--ADPVVLLNPRVVDAATETDEQYEGCLSFFDHR 440 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R I V + + I + +A + HE+DHL G L++D ++ Sbjct: 441 GLVPRPLRIDVEHALWDGSRVITSYEYAMARLVAHEIDHLEGRLYVDRMA 490 >gi|194014264|ref|ZP_03052881.1| peptide deformylase [Bacillus pumilus ATCC 7061] gi|194013290|gb|EDW22855.1| peptide deformylase [Bacillus pumilus ATCC 7061] Length = 185 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 22/160 (13%) Query: 12 PILRRVSR-----PIEKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYRL 58 P+LR+ + P E+ + ++I+ +M E G+GLAA QI V R+ Sbjct: 13 PVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDADMAEKYGLRPGVGLAAPQINVSKRM 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS----IPDYRADVKRSAFITV 112 + + +D + NP+I++ S + EGCLS IP + V R I V Sbjct: 73 IAVHCEDEDGVEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGF---VPRYQKIRV 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + I G A QHE+DHLNGI+F DH+ + Sbjct: 130 KGTTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169 >gi|284036700|ref|YP_003386630.1| formylmethionine deformylase [Spirosoma linguale DSM 74] gi|283815993|gb|ADB37831.1| formylmethionine deformylase [Spirosoma linguale DSM 74] Length = 168 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%) Query: 6 LVIFPDPILRRVSRPIEK----INSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59 L++ DP L + P+ + + D + + N++E + + G G+AA Q+G++ RL+ Sbjct: 7 LLLLGDPRLYQTCEPVLESELPLVPDWVADLHNVMEEIRAKYQFGRGIAAPQLGIMKRLI 66 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +++ P V INP+++ SD+ + C+S P+ V+R +T+ Y D + Sbjct: 67 YLNVD------RPQVIINPELVAVSDETDELWDDCMSFPNLLVRVRRHKKLTLTYRDEHW 120 Query: 120 Q-HQIIYADGLLATCLQHELDHLNGIL 145 Q H D ++ +QHE DHLNG L Sbjct: 121 QTHTWDVTDWRISELIQHEYDHLNGFL 147 >gi|163790334|ref|ZP_02184766.1| peptide deformylase [Carnobacterium sp. AT7] gi|159874405|gb|EDP68477.1| peptide deformylase [Carnobacterium sp. AT7] Length = 187 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 26/164 (15%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58 P LR V++ + I+S+ L ++ML+ + ++ G+GLAA Q+ + R+ Sbjct: 13 PTLRMVAKELTLPISSEEKQLGEDMLQFLKNSQDPEIAEKYSLRAGVGLAAPQLDISKRM 72 Query: 59 VVIDLQD-HAHRKNPM---VFINPKIITFSDDFS--VYQEGCLSI----PDYRADVKRSA 108 + + + P+ V +NPKII+ S + EGCLS+ P Y V R + Sbjct: 73 IAVHIPGIEEGTDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVPGY---VPRHS 129 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT+ Y D + I A +QHE+DH+NGI+F DH+++ Sbjct: 130 RITLTYFDLAGEAHKIRLKNYQAIVIQHEIDHINGIMFYDHINQ 173 >gi|54296635|ref|YP_123004.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris] gi|53750420|emb|CAH11814.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris] Length = 229 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 18/141 (12%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKN----PM-VFI 76 +N + +LI+ M + +Y+ G+GLAA Q+ +++ + + + A R N PM + I Sbjct: 57 LNREDQDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRDNAKIYPMHILI 116 Query: 77 NPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYADGLL 130 NP DF EGC S+ V R I ++Y D HQ I +G Sbjct: 117 NPNYEPLPQARIISDF----EGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQI-ENGFY 171 Query: 131 ATCLQHELDHLNGILFIDHLS 151 A LQHE+DHLNG+L D L+ Sbjct: 172 ARVLQHEIDHLNGVLITDRLT 192 >gi|196019297|ref|XP_002118957.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens] gi|190577546|gb|EDV18557.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens] Length = 395 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 15/101 (14%) Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIP--------DYRADVKRSAFITVRYMDCNAQ 120 + P F+NPKI ++ V EGCLS+P + ++VKR I + Y++ N + Sbjct: 55 ERKPYFFLNPKIKLNHNNEIVLPEGCLSVPMESIFKEYNGNSNVKRPEVIEIEYINENLE 114 Query: 121 HQIIYADG-------LLATCLQHELDHLNGILFIDHLSRLK 154 +I+ DG + C QHE DHL+G+LF+D L + K Sbjct: 115 KEIMKIDGSKDDYWKWFSRCAQHENDHLDGVLFVDRLEKEK 155 >gi|160900287|ref|YP_001565869.1| peptide deformylase [Delftia acidovorans SPH-1] gi|160365871|gb|ABX37484.1| peptide deformylase [Delftia acidovorans SPH-1] Length = 179 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 7/143 (4%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVI--DLQDHA 67 DP L RV++P+ + ++D ++L+ + L M++ +G GLAA QIGV ++VV L + Sbjct: 11 DPRLLRVAQPVTEFDTDELHLLLSDLLDTMHAANGAGLAAPQIGVDLQMVVFGSGLPNPR 70 Query: 68 HRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+ V INP I +D + EGCLS+P R V R I D Sbjct: 71 YPDAPVVPRTVLINPVITPMGEDEHLDWEGCLSVPGMRGMVPRWNHIRYTGFDVFGDAID 130 Query: 124 IYADGLLATCLQHELDHLNGILF 146 DG A +QHE DHL G L+ Sbjct: 131 RTVDGFHARVVQHECDHLWGKLY 153 >gi|159040050|ref|YP_001539303.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918885|gb|ABW00313.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 506 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 11/148 (7%) Query: 13 ILRRVSRPIEKINSD--IMNLIDNMLEVMYSTD-------GIGLAAVQIGVLYRLVVIDL 63 +LR+ +RP + D +++D + ++ D G+G+AA Q+G+ V+ Sbjct: 341 LLRQPTRPFDLPREDRAARDVVDRLTATLFRLDELHPFSKGVGIAAPQLGIGRAAAVVRP 400 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D + P+V +NP+++ + D EGCLS D R V R I V + + I Sbjct: 401 PDLS--GEPVVLLNPRVVDAAPDTDEQYEGCLSFFDQRGLVPRPLRIDVEHTHIDGSRVI 458 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + +A + HE+DHL G L++D ++ Sbjct: 459 TSYEYGMARLVAHEIDHLEGRLYVDRMA 486 >gi|217964856|ref|YP_002350534.1| peptide deformylase [Listeria monocytogenes HCC23] gi|290893798|ref|ZP_06556777.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071] gi|254767592|sp|B8DCF7|DEF_LISMH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|217334126|gb|ACK39920.1| peptide deformylase [Listeria monocytogenes HCC23] gi|290556625|gb|EFD90160.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071] gi|307570585|emb|CAR83764.1| polypeptide deformylase [Listeria monocytogenes L99] gi|313609509|gb|EFR85061.1| peptide deformylase [Listeria monocytogenes FSL F2-208] Length = 183 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 22/160 (13%) Query: 12 PILRRVSRPI--------EKINSDIMNLI-----DNMLEVMYSTDGIGLAAVQIGVLYRL 58 P LR V+ + +K+ D++ + + M E G+G+AA Q+ V R Sbjct: 13 PALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEEMAEKYGLRGGVGIAAPQLAVTKRF 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112 + I + D R V NPKI + S + EGCLS+ P Y V RS +T+ Sbjct: 73 LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D N + A +QHE+DHLNGI+F DH+++ Sbjct: 130 DAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINK 169 >gi|255027127|ref|ZP_05299113.1| peptide deformylase [Listeria monocytogenes FSL J2-003] Length = 131 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 9/115 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI---- 97 G+G+AA Q+ V R + I + D R V NPKI + S + EGCLS+ Sbjct: 6 GVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREV 65 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 P Y V RS +T+ D N + G A +QHE+DHLNGI+F DH+++ Sbjct: 66 PGY---VVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINK 117 >gi|315302541|ref|ZP_07873376.1| peptide deformylase [Listeria ivanovii FSL F6-596] gi|313629103|gb|EFR97401.1| peptide deformylase [Listeria ivanovii FSL F6-596] Length = 183 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 22/160 (13%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58 P LR+V+ + ++ + L MLE + ++ G+G+AA Q+ V R Sbjct: 13 PALRKVASEVTFPLSDEEKKLGREMLEFLINSQDEEVAEKYGLRGGVGIAAPQLAVTKRF 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112 + I + D R V NPKI + S + EGCLS+ P Y V RS +T+ Sbjct: 73 LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D + + G A +QHE+DHLNGI+F DH+++ Sbjct: 130 DAFDEDGAPLKLRFKGYPAIVVQHEIDHLNGIMFYDHINK 169 >gi|257899443|ref|ZP_05679096.1| peptide deformylase [Enterococcus faecium Com15] gi|293573058|ref|ZP_06683999.1| peptide deformylase [Enterococcus faecium E980] gi|257837355|gb|EEV62429.1| peptide deformylase [Enterococcus faecium Com15] gi|291606877|gb|EFF36258.1| peptide deformylase [Enterococcus faecium E980] Length = 187 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 34/168 (20%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P LR V+ + ++ + ++L MLE + ++ G+GLAA Q+ + R Sbjct: 12 NPTLREVAEEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRAD 103 ++ + H +P V NPKI++ S D EGCLS+ P Y Sbjct: 72 IIAV----HVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGY--- 124 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 125 VVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIN 172 >gi|254247880|ref|ZP_04941201.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184] gi|124872656|gb|EAY64372.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184] Length = 177 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L +++P+E+ ++ ++ ++ +M E M+ +G GLAA QIG+ ++++ ++ Sbjct: 10 DPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGNNNRY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INPK+ + EGCLS+P R V R A + D Q Sbjct: 70 PDAPPVPETVLINPKVEYLPPEMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGQKIDR 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ ++ R T+ Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165 >gi|332024895|gb|EGI65083.1| Peptide deformylase, mitochondrial [Acromyrmex echinatior] Length = 240 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 17/157 (10%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 DP+LR + IE +D +I +++ VM + G++ QIG+ +++ I+ + Sbjct: 55 DPVLRGHAMKIEPEVIRMADFQKVITHLINVMRAYKSYGISGPQIGLPWQIFAIECTEEI 114 Query: 67 ----------AHRKN--PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 H N PM +FINP++ EGC SI Y A V R+ + ++ Sbjct: 115 MEGVEETVKKTHEMNIIPMTIFINPELKVMDYTPITLYEGCESIRGYSAAVPRAYEVEIK 174 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ +A+ A G A QHE DHL G L+I+ + Sbjct: 175 ALNASAEQFTWRACGWSARIAQHEYDHLQGKLYIEKM 211 >gi|260583921|ref|ZP_05851669.1| peptide deformylase [Granulicatella elegans ATCC 700633] gi|260158547|gb|EEW93615.1| peptide deformylase [Granulicatella elegans ATCC 700633] Length = 185 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 18/175 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V+ P LR+ + I ++ D+ +L MLE ++++ G+GLAA Sbjct: 5 KDIVLEGHPALRKRAGKISFPLSDDLQHLAKEMLEFLHNSQDEEIAAKYELRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVK 105 Q+G +++ + + + + V+INP+I+ S + +EG CLS+ D V Sbjct: 65 QLGKEIQMIALLIPGYEDEPALLDEVWINPRILRESVKKTCLKEGEGCLSVNRDVPGVVL 124 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R ITV+Y + ++ A +QHE+DHLNG++F DH+++ + I + Sbjct: 125 RPQRITVKYFTPEGEEKVKTLTDYEAIVVQHEIDHLNGVMFYDHINQAQPQYIPE 179 >gi|257866651|ref|ZP_05646304.1| peptide deformylase [Enterococcus casseliflavus EC30] gi|257872832|ref|ZP_05652485.1| peptide deformylase [Enterococcus casseliflavus EC10] gi|257876255|ref|ZP_05655908.1| peptide deformylase [Enterococcus casseliflavus EC20] gi|257800609|gb|EEV29637.1| peptide deformylase [Enterococcus casseliflavus EC30] gi|257806996|gb|EEV35818.1| peptide deformylase [Enterococcus casseliflavus EC10] gi|257810421|gb|EEV39241.1| peptide deformylase [Enterococcus casseliflavus EC20] Length = 187 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 26/165 (15%) Query: 11 DPILRRVSRPIE--------KINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR V++ + + ++M ++N + + + + G+GLAA Q+ + R Sbjct: 12 NPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQLDISKR 71 Query: 58 LVVIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKRS 107 + + + K V NPKI++ S + EG CLS+ P Y V R Sbjct: 72 ITAVLVPSSDPEKTEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGY---VVRH 128 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A IT+ Y D N + + + A +QHE+DHLNG++F DH+++ Sbjct: 129 ARITISYYDINGKKKKVRLKNYPAIVVQHEIDHLNGVMFYDHINQ 173 >gi|167626562|ref|YP_001677062.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596563|gb|ABZ86561.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 201 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 16/150 (10%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I +S+ N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 13 NEVLYQRCKPVNDIQSSETQNIIAEMYEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 70 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120 + P+ VFINPKI S+ + GCLS + + R K + + + Y N Sbjct: 71 RYPLSFDSVPFQVFINPKITKASEKRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 128 Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148 + I D + A QHE +HL G +++D Sbjct: 129 GKKITGKLDSIAAVIFQHEFNHLLGSVYVD 158 >gi|15596319|ref|NP_249813.1| peptide deformylase [Pseudomonas aeruginosa PAO1] gi|9947041|gb|AAG04511.1|AE004542_7 probable peptide deformylase [Pseudomonas aeruginosa PAO1] Length = 147 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 11 DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 D L R+++P+ + ++ LID+M E M+ G+GLAA QIGV +LV+ + Sbjct: 10 DERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE 69 Query: 68 HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P + +NP++ D+ EGCLS+P R V R I + +D Sbjct: 70 RYPDAPAVPPTILLNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQGLDPQDSRS 129 Query: 123 IIYADG 128 + G Sbjct: 130 TAASKG 135 >gi|299538334|ref|ZP_07051617.1| peptide deformylase [Lysinibacillus fusiformis ZC1] gi|298725921|gb|EFI66513.1| peptide deformylase [Lysinibacillus fusiformis ZC1] Length = 191 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 14/115 (12%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI---- 97 G GL+A QIGV R+ + D M+ INPKII+ S + + EGCLS+ Sbjct: 66 GSGLSANQIGVNKRMFAVLFDDQE-----MMLINPKIISHSLNMIYLPEGEGCLSVNRPV 120 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 P + V R I V+ D + I+ G A +QHE+DHLNGI+F D +++ Sbjct: 121 PGF---VPRYERIKVKAYDIDGHESIVQLQGYGAIVVQHEIDHLNGIMFYDRINK 172 >gi|290562011|gb|ADD38403.1| Peptide deformylase, mitochondrial [Lepeophtheirus salmonis] Length = 247 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 18/156 (11%) Query: 11 DPILR-RVSR-PIEKINSDIMNLI-DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DPILR +V P+ +I + +N I D +L V+ D +G++A QIG + + Sbjct: 46 DPILRGKVEEIPLSEIKTPFINSIADKLLHVLKKYDAVGVSAPQIGTPIAMFAVGFTKSQ 105 Query: 68 HRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + P V INP+I S ++EGC S+ + A V R + + Sbjct: 106 IKSWSTETVAKEGMEPIDPPRVVINPRIDIIDSSSSTHREGCCSLYGFSAQVARYRKVLL 165 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + + + + A A +QHE+DHL+G LFID Sbjct: 166 KGYNIHGEAFEWLATDWTARIIQHEMDHLSGKLFID 201 >gi|284033559|ref|YP_003383490.1| formylmethionine deformylase [Kribbella flavida DSM 17836] gi|283812852|gb|ADB34691.1| formylmethionine deformylase [Kribbella flavida DSM 17836] Length = 162 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 6/151 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ 64 +V P P+L ++ ++ ++ L +++ M + G +GLAA Q+GV ++ +D+ Sbjct: 1 MVRAPHPVLATEGAEVDPLDPVMLALAADLVATMRISPGCVGLAAPQVGVAAQMFALDVT 60 Query: 65 DHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR-YMDCNAQ 120 H + V N ++ + +EGC+S+PD DVKR+ +TV + Sbjct: 61 GHPKTRTCHGVFVLCNAVVVEATRKEKA-REGCMSVPDLTGDVKRATRLTVTGVLPGTTD 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D A +QHE+DH NG LF+D ++ Sbjct: 120 VVTLTTDAFEARAVQHEIDHCNGSLFLDRVA 150 >gi|332523659|ref|ZP_08399911.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176] gi|332314923|gb|EGJ27908.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176] Length = 136 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 9/139 (6%) Query: 8 IFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 I DP L++VS+ K + I + + L + + +GLAA IG R+++I + Sbjct: 5 IVKDPFFLQQVSKQATKEDLPIGKDLQDTL-AFHRENCLGLAANMIGESKRIIIISMGFV 63 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 +V NPK++ SD + + +E CLS+ + KR ITV Y+D N + + + Sbjct: 64 -----DLVMFNPKLVKKSDSY-ITEESCLSLSGNQK-TKRYQKITVEYLDLNWRKKSLSL 116 Query: 127 DGLLATCLQHELDHLNGIL 145 +GL A QHELDHL+GIL Sbjct: 117 NGLAAQICQHELDHLDGIL 135 >gi|262199337|ref|YP_003270546.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365] gi|262082684|gb|ACY18653.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365] Length = 171 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 4/104 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G G+AA QIGV RL+ +++ P+ INP+++ S++ V + C S+P Sbjct: 48 GRGIAAPQIGVHQRLIFVNV--PGGFSGPL--INPQVVWSSEEQMVLWDDCFSLPGLMVR 103 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 V R+A + V + + + + + I AD L+ LQHE+DHL+GIL + Sbjct: 104 VARAAQVRVSFQNQHGEARSIEADRALSELLQHEIDHLDGILAV 147 >gi|15829160|ref|NP_326520.1| polypeptide deformylase 2 (PDF 2) (formylmethionine deformylase 2) [Mycoplasma pulmonis UAB CTIP] gi|23396551|sp|Q98PN3|DEF_MYCPU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|14090104|emb|CAC13862.1| POLYPEPTIDE DEFORMYLASE 2 (PDF 2) (FORMYLMETHIONINE DEFORMYLASE 2) [Mycoplasma pulmonis] Length = 198 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 31/181 (17%) Query: 1 MVKKPLVIFPDPILRRVSR----PIEKINSD-----IMNLIDNMLEVMYSTDGIGLAAVQ 51 M K +V P +LR+ S+ P+ K N + I ++ D+ G+G+AAVQ Sbjct: 4 MFKVEIVQLPKKVLRQKSKNVNIPLNKTNIELAEKMIYHIDDSQGPNTKFRPGVGVAAVQ 63 Query: 52 IGVLYRLVVI--------DLQDHAHRKNPM-------VFINPKIITFSDDF-SVYQ-EGC 94 G+L + + +D + P V NP++I SD+ ++ Q EGC Sbjct: 64 YGILKNVFYVCVPNDSRLTQRDSSQEVKPEDKYLFRDVIFNPEVIWKSDEMVAISQGEGC 123 Query: 95 LSI----PDYRADVKRSAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 LS+ P+ V+R I V+ Y + I + G +A QHELDHLNG+LFID Sbjct: 124 LSVDESWPNQEGLVRRHMEIKVKGYSYFQKKEMIWHVKGYVAIVFQHELDHLNGMLFIDR 183 Query: 150 L 150 + Sbjct: 184 I 184 >gi|326316988|ref|YP_004234660.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373824|gb|ADX46093.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 179 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 7/140 (5%) Query: 14 LRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN- 71 L R++RP+ + + ++ L+ +M + M + +G GLAA QIGV ++V+ + R Sbjct: 14 LLRIARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVVIFGSNERNPRYPD 73 Query: 72 -----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 P V +NP+I D+ EGCLS+P R V R + I D + Sbjct: 74 RPLVPPTVLVNPRITPLGDEEEEDWEGCLSVPGLRGVVPRWSRIHYAGFDEHGTPIDRTV 133 Query: 127 DGLLATCLQHELDHLNGILF 146 +G A +QHE DHL G L+ Sbjct: 134 EGFHARVVQHECDHLVGKLY 153 >gi|223985568|ref|ZP_03635622.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM 12042] gi|223962475|gb|EEF66933.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM 12042] Length = 141 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 10/140 (7%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQD 65 I DPIL +SRP + ++ + + ++ + + ++ G+AA IG R++ + + D Sbjct: 9 IVTDPIL--LSRPSREATAEDLAVAADLKDTLIAHADHCAGMAANMIGQSVRVIAVFVAD 66 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+V INP+II +EGCLS+P R +R + +RY D ++ + Sbjct: 67 Q-----PLVLINPQIIKAEGRKYTAEEGCLSLPGTR-RAQRFEKLQLRYQDEQSRIKQRT 120 Query: 126 ADGLLATCLQHELDHLNGIL 145 G A +QHELDH GIL Sbjct: 121 FSGFTAQVIQHELDHCEGIL 140 >gi|254457085|ref|ZP_05070513.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] gi|207085877|gb|EDZ63161.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] Length = 278 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---D 62 ++ +P P + N +I+++I ++ + + + LAA QIG +Y ++VI D Sbjct: 5 IITYPTPPSVEYGTDVRVFNEEIISIIQDLKDTIEANSLEALAAFQIGAMYNIIVIKKGD 64 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + A + INP+II+ S+ S ++ P A+V+R +++ Y D N + Sbjct: 65 MSFVAGDDGFLELINPRIISCSEKISTVEKTAY-FPGLSANVERHNNVSIIYEDKNFKQH 123 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + A G A LQ ++D+ G FI+ LS+ ++ + KK+ Sbjct: 124 NLKATGGEAILLQRKIDYTFGSSFINKLSKDEKKLFEKKL 163 >gi|294155360|ref|YP_003559744.1| peptide deformylase [Mycoplasma crocodyli MP145] gi|291600027|gb|ADE19523.1| peptide deformylase [Mycoplasma crocodyli MP145] Length = 183 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 86/176 (48%), Gaps = 30/176 (17%) Query: 1 MVKKPLVIFPDPILRRVSR--PIEKINSD-------IMNLIDNMLEVMYSTDGIGLAAVQ 51 M + LV P +LR S+ PI + D I ++ D+ E G+G+AAVQ Sbjct: 1 MYEVKLVKLPKKVLREKSKDVPIPLLPEDVELAEKMIYHIDDSQKEGSKFRAGVGVAAVQ 60 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQ--EGCLSI----PDYR 101 G+L + + ++D K+ +F NPKII+ S+ + EGCLS+ P Sbjct: 61 YGILKNVFYVHVRDFD--KDIEIFRDVLFNPKIISKSETLTALSDGEGCLSVSESWPGQS 118 Query: 102 ADVKRSAFITVR---YMDCNAQHQIIYAD--GLLATCLQHELDHLNGILFIDHLSR 152 V RSA I V YM Q +++ D G +A QHELDHL G LFID + + Sbjct: 119 GLVHRSARIVVEAYSYM----QKKVVEFDVFGYVAIVFQHELDHLEGKLFIDRIDK 170 >gi|328676563|gb|AEB27433.1| Peptide deformylase [Francisella cf. novicida Fx1] Length = 204 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 20/152 (13%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I S +I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 16 NKVLYQKCKPVADIQSAEIQNIITEMHEKM-QCNGIGLAANQIGYPYQIFMIEF-DSSNA 73 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + P VFINPKI S + GCLS KR T + ++ A + Sbjct: 74 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSA----LGEKRGKLATYKEIEYEAYN 129 Query: 122 Q-----IIYADGLLATCLQHELDHLNGILFID 148 Q I + + A QHE +HL G +++D Sbjct: 130 QHGEKIIGKLESIAAVIFQHEFNHLLGSVYVD 161 >gi|284006808|emb|CBA72075.1| polypeptide deformylase [Arsenophonus nasoniae] Length = 219 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 9/114 (7%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRK--------NPMVFINPKIITFSDDFSVY-QEGCLS 96 GLAA Q+G +++V+I + A K +P + INP + + EGC S Sbjct: 86 GLAAPQVGYPFKIVIIQIPPEAKEKRKDVYDTLSPTILINPVYTPILNAGQIKDWEGCFS 145 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 IP+ +V R I + +A G LA +QHE+DHLNG L+ID+L Sbjct: 146 IPNKMGEVYRYNEIYYEAYTLEGKKISAHAKGFLARLIQHEIDHLNGKLYIDYL 199 >gi|118497100|ref|YP_898150.1| peptide deformylase [Francisella tularensis subsp. novicida U112] gi|208778893|ref|ZP_03246239.1| polypeptide deformylase [Francisella novicida FTG] gi|118423006|gb|ABK89396.1| peptide deformylase [Francisella novicida U112] gi|208744693|gb|EDZ90991.1| polypeptide deformylase [Francisella novicida FTG] Length = 211 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 16/150 (10%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I S +I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 23 NKVLYQKCKPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS + + R K + + + Y N Sbjct: 81 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 138 Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148 + I D + A QHE +HL G +++D Sbjct: 139 GEKITGKLDSIAAVIFQHEFNHLLGSVYVD 168 >gi|254372465|ref|ZP_04987954.1| hypothetical protein FTCG_00025 [Francisella tularensis subsp. novicida GA99-3549] gi|151570192|gb|EDN35846.1| hypothetical protein FTCG_00025 [Francisella novicida GA99-3549] Length = 210 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 16/150 (10%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I S +I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 22 NKVLYQKCKPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS + + R K + + + Y N Sbjct: 80 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 137 Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148 + I D + A QHE +HL G +++D Sbjct: 138 GEKITGKLDSIAAVIFQHEFNHLLGSVYVD 167 >gi|223043863|ref|ZP_03613905.1| peptide deformylase [Staphylococcus capitis SK14] gi|222442767|gb|EEE48870.1| peptide deformylase [Staphylococcus capitis SK14] Length = 183 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99 G+GLAA QI V R++ + L D + K+ + +NPK++++S + + EGCLS+ + Sbjct: 58 GVGLAAPQIDVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDEN 117 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R +T++ D + + G A QHE+DHLNG++F D++ Sbjct: 118 IPGLVHRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYI 168 >gi|322388290|ref|ZP_08061894.1| peptide deformylase [Streptococcus infantis ATCC 700779] gi|321140962|gb|EFX36463.1| peptide deformylase [Streptococcus infantis ATCC 700779] Length = 136 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 10/133 (7%) Query: 14 LRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 L +VS+P + + + +L D +L S +GLAA IGV R+++ ++ P Sbjct: 12 LSQVSQPASQEDLPLAKDLQDTLLANRESC--VGLAANMIGVQKRVIIFNI-----GMIP 64 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 MV NP + +F + +EGCLS+ R R ITV Y D + Q Q I G A Sbjct: 65 MVMFNPVLQSFEGSYET-EEGCLSLTGVRP-TTRYEKITVSYRDIHWQEQTITLTGFPAQ 122 Query: 133 CLQHELDHLNGIL 145 QHELDHL GI+ Sbjct: 123 ICQHELDHLEGII 135 >gi|322386945|ref|ZP_08060569.1| peptide deformylase [Streptococcus cristatus ATCC 51100] gi|321269227|gb|EFX52163.1| peptide deformylase [Streptococcus cristatus ATCC 51100] Length = 210 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 22/135 (16%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITF 83 M E M G+GLAA Q+ + R++ + +L+D NP V NPK++ Sbjct: 67 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNLEDE--EGNPPKEAYSLAQVMYNPKVVAH 124 Query: 84 S--DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 S D EGCLS+ P Y V R A +TV Y D + Q I G + +QHE Sbjct: 125 SVQDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNSIVVQHE 181 Query: 138 LDHLNGILFIDHLSR 152 +DH+NGI+F D ++ Sbjct: 182 IDHINGIMFYDRINE 196 >gi|332884559|gb|EGK04817.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836] Length = 190 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 16/138 (11%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGV---LYRLVVIDLQDHAHRKNPM-VFINPKI 80 N D+ LID + + G+G+AA Q+G+ L+ + ID + P+ V INP+I Sbjct: 47 NKDLQLLIDRLQMTLAVESGVGIAAPQVGIGRNLFLFLRID-----QKGMPVQVAINPRI 101 Query: 81 ITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ------HQIIYADGLLATC 133 + S + F ++GCLS+P+ R ++ V Y D N Sbjct: 102 VGHSAETFLFERDGCLSVPELSGTTNRYTWVDVEYYDDNGTLIKERLSGGSRGGDFTGVI 161 Query: 134 LQHELDHLNGILFIDHLS 151 QHE DHL GILF D L+ Sbjct: 162 FQHEYDHLQGILFTDRLA 179 >gi|327460694|gb|EGF07029.1| peptide deformylase [Streptococcus sanguinis SK1] Length = 210 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E M G+GLAA Q+ + RL+ + + + NP + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAASQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|239636306|ref|ZP_04677308.1| polypeptide deformylase [Staphylococcus warneri L37603] gi|239597661|gb|EEQ80156.1| polypeptide deformylase [Staphylococcus warneri L37603] Length = 162 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PI + + ++ + + + ++ + +Y+ +G L+A QIG+ ++ + Sbjct: 1 MSVKKLVKSEHPIFNQPANSVKHFDDQLKQTLIDVEDSLYALEGSALSANQIGINQQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++ + + INPKI S++ EG +S+P+ +V+RS I V D N Sbjct: 61 VDME----MEGLLQLINPKIKKQSEETITDLEGSVSLPNVFGEVERSKMIVVESNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D LNGI F + R+ Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTEKAKRI 149 >gi|315281776|ref|ZP_07870335.1| peptide deformylase [Listeria marthii FSL S4-120] gi|313614586|gb|EFR88171.1| peptide deformylase [Listeria marthii FSL S4-120] Length = 183 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 22/160 (13%) Query: 12 PILRRVSRPI--------EKINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYRL 58 P LR V+ + +K+ D++ + D L Y G+G+AA Q+ V R Sbjct: 13 PALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEELAEKYGLRGGVGIAAPQLAVTKRF 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112 + I + D R V NPKI + S + EGCLS+ P Y V RS +T+ Sbjct: 73 LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D N + A +QHE+DHLNGI+F DH+++ Sbjct: 130 DAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINK 169 >gi|161524426|ref|YP_001579438.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|189350819|ref|YP_001946447.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|160341855|gb|ABX14941.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|189334841|dbj|BAG43911.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616] Length = 177 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAA-----VQIGVLYRLVVIDLQ 64 DP L V+RP+++ ++ ++ ++ +M E M+ +G GLAA +++ D Sbjct: 10 DPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGSNDRY 69 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A V INPK+ D EGCLS+P R V R A + D Sbjct: 70 PDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGAKIDR 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ ++ R T+ Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165 >gi|332365599|gb|EGJ43359.1| peptide deformylase [Streptococcus sanguinis SK1059] Length = 210 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E M G+GLAA Q+ + RL+ + + + NP + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|313901227|ref|ZP_07834715.1| peptide deformylase [Clostridium sp. HGF2] gi|312954185|gb|EFR35865.1| peptide deformylase [Clostridium sp. HGF2] Length = 184 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 18/159 (11%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 D I+R S P+ + ++ L+ +ML + S+ +G+AA+Q+GV R Sbjct: 13 DAIVRTKSEPVTLPLGAEDEALLQDMLTYVRSSQDAEIAEKENLRPAVGIAAIQLGVPKR 72 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRY 114 ++ + + + + +NP+I++ S + + EGCLS+ ++ V R+A ITVR Sbjct: 73 MLAVVVPNE-EGIDEYALVNPRIVSESVQRAYLKNGEGCLSVENEHEGIVPRAARITVRG 131 Query: 115 MDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 D + +I I A LA LQHE+DH +G LF D +++ Sbjct: 132 YDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170 >gi|183602110|ref|ZP_02963478.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219683022|ref|YP_002469405.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|241191342|ref|YP_002968736.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196748|ref|YP_002970303.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218603|gb|EDT89246.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219620672|gb|ACL28829.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|240249734|gb|ACS46674.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251302|gb|ACS48241.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177468|gb|ADC84714.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794335|gb|ADG33870.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9] Length = 217 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 15/157 (9%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR V + + LI+ M + M G+GLA QIG+ + V+ Sbjct: 29 PIVEAGEPVLREQCVRYDGQLSKHTLHKLIETMHKTMLDAPGVGLAGPQIGLNLAIAVV- 87 Query: 63 LQDHAHRKN----------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +DHA+ + P INP ++ + EGCLS Y+A KR I Sbjct: 88 -EDHANGDDDGDPREIAEFPFHAIINPVYRPAGEETRSFYEGCLSFDGYQAVRKRYLDII 146 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + D + + + G A QHE DHL+G L+ID Sbjct: 147 AHWHDEDGKEHEEHLHGWPARIFQHETDHLSGELYID 183 >gi|332365804|gb|EGJ43561.1| peptide deformylase [Streptococcus sanguinis SK355] Length = 210 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E M G+GLAA Q+ + RL+ + + + NP + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|324992462|gb|EGC24383.1| peptide deformylase [Streptococcus sanguinis SK405] gi|327472415|gb|EGF17846.1| peptide deformylase [Streptococcus sanguinis SK408] gi|327488768|gb|EGF20567.1| peptide deformylase [Streptococcus sanguinis SK1058] Length = 210 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E M G+GLAA Q+ + RL+ + + + NP + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|328944870|gb|EGG39030.1| peptide deformylase [Streptococcus sanguinis SK1087] Length = 210 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNPM--------VFINPKIITFS- 84 M E M G+GLAA Q+ + RL+ + + + NP + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGNPTKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|319892089|ref|YP_004148964.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] gi|317161785|gb|ADV05328.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] gi|323464802|gb|ADX76955.1| peptide deformylase 2 [Staphylococcus pseudintermedius ED99] Length = 183 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99 G+GLAA QI V R+ + L D + +NPKI++ S D + EGCLS+ D Sbjct: 58 GVGLAAPQINVPKRMFAVYLPDDGEGHSYDFAIVNPKIVSHSVQDAYLPTGEGCLSVDED 117 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R I ++ D + + G A +QHELDHLNG+LF DH+ + Sbjct: 118 VPGLVHRHYRIKLKGYDIDGNEINLRLKGYPAIVVQHELDHLNGVLFYDHIDQ 170 >gi|324989743|gb|EGC21686.1| peptide deformylase [Streptococcus sanguinis SK353] gi|327468374|gb|EGF13859.1| peptide deformylase [Streptococcus sanguinis SK330] Length = 210 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E M G+GLAA Q+ + RL+ + + + NP + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|221198327|ref|ZP_03571373.1| peptide deformylase [Burkholderia multivorans CGD2M] gi|221208266|ref|ZP_03581270.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221171914|gb|EEE04357.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221182259|gb|EEE14660.1| peptide deformylase [Burkholderia multivorans CGD2M] Length = 177 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 10/158 (6%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66 DP L V+RP+++ ++ ++ ++ +M E M+ +G GLAA QIG+ ++++ + Sbjct: 10 DPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGSNNRY 69 Query: 67 --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A V INPK+ D EGCLS+P R V R A VRY + I Sbjct: 70 PDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYA--KVRYSGSDQFGAKI 127 Query: 125 --YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ ++ R T+ Sbjct: 128 DRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165 >gi|307181864|gb|EFN69304.1| Peptide deformylase, mitochondrial [Camponotus floridanus] Length = 238 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 24/167 (14%) Query: 11 DPILRRVSRPIE----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQD 65 DP+LR + IE K+ D +I +++ +M S D G++ QIG+ +++ I+ + Sbjct: 54 DPVLRGHAMKIEPEVIKL-EDFQKVITHLINIMRSYDACGMSGPQIGLPWQIFAIEHTME 112 Query: 66 HAHRKNPMV-------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 H + ++ FINP++ + EGC S+ Y A V R+ I + Sbjct: 113 HMKTSDEVIKKAYEMEVIPVTIFINPELKIIDHTPIILYEGCESVRGYSAAVPRAYEIEI 172 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 ++ +A+ G A QHE DHL G L+ID K DM T Sbjct: 173 TALNASAEQFTWRGRGWSARIAQHEYDHLQGELYID-----KMDMST 214 >gi|293364031|ref|ZP_06610767.1| peptide deformylase [Mycoplasma alligatoris A21JP2] gi|292552521|gb|EFF41295.1| peptide deformylase [Mycoplasma alligatoris A21JP2] Length = 183 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 23/182 (12%) Query: 6 LVIFPDPILRR----VSRPIEKINSD-----IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 LV P +LR+ VS P+ + + D I ++ D+ E G+G+AAVQ G+L Sbjct: 6 LVKLPKKVLRQKSVNVSIPLIQEDIDLAEKMIYHIDDSQKENSKFRPGVGVAAVQYGILK 65 Query: 57 RLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKRSA 108 + + ++D + K V NPKII+ S+ + EG CLS+ P V R A Sbjct: 66 NVFYVHVRDSVNNKEIFRDVLFNPKIISRSETKTALSEGEGCLSVHEDWPGQEGFVHRDA 125 Query: 109 FITVRYMDCNAQHQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + V Q +++ D G +A QHELDHL G LFID R+ + KK++ + Sbjct: 126 RVIVEAYSY-FQKKVVTFDVFGYVAIVFQHELDHLQGNLFID---RINKKQPWKKVANAI 181 Query: 167 QL 168 L Sbjct: 182 YL 183 >gi|145596629|ref|YP_001160926.1| formylmethionine deformylase [Salinispora tropica CNB-440] gi|145305966|gb|ABP56548.1| formylmethionine deformylase [Salinispora tropica CNB-440] Length = 506 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 11/148 (7%) Query: 13 ILRRVSRPI-----EKINSDIMNLIDNML----EVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +LR+ +RP E++ ++ + L E+ + G+G+AA Q+G+ V+ Sbjct: 341 LLRQPTRPFDLPREEEVAQQAVDRLTAALVRLDELHPFSKGVGVAAPQLGIGRAAAVVRP 400 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D P+V +NP+++ + D EGCLS D R V R I V + + I Sbjct: 401 PDRG--GEPVVLLNPRVVDAAPDSDEQYEGCLSFFDQRGLVPRPLRIDVEHTHLDGSRVI 458 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + +A + HE+DHL G L++D ++ Sbjct: 459 TSYEYAMARLVAHEIDHLEGRLYVDRMA 486 >gi|300854965|ref|YP_003779949.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300435080|gb|ADK14847.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 160 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 13/151 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTD-GIGLAAVQIGV 54 M+K+ L++ D + ++ S P+EK I +++L D +++ + G +AA QIGV Sbjct: 1 MIKEILLLGNDALYKK-SLPVEKEDMDSIKETVLDLHDTLIDFRKKYNAGRAIAAPQIGV 59 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 RL+ + + P+VFINP + + + + C+S P+ VKR ++ Y Sbjct: 60 FKRLI------YMYIDKPIVFINPVLKFDNKEMMDVMDDCMSFPNLLVKVKRYKECSIIY 113 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 D N + + G L+ +QHE DHL+GIL Sbjct: 114 KDINFADKTLKFKGDLSELIQHEYDHLDGIL 144 >gi|325688984|gb|EGD30992.1| peptide deformylase [Streptococcus sanguinis SK115] Length = 210 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E M G+GLAA Q+ + RL+ + + + NP + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAAPQLNISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|269955472|ref|YP_003325261.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] gi|269304153|gb|ACZ29703.1| Peptide deformylase [Xylanimonas cellulosilytica DSM 15894] Length = 223 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 14/159 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+V DP+LR + P D++ L + M M++ G+GLAA Q+G+ L V++ Sbjct: 31 PIVQSGDPVLRTPAAPYTGQLGDLLPRLAEVMRRTMHAAPGVGLAAPQVGIGLALAVVED 90 Query: 64 QDH---AHRKNPMVF---INPKIITFSDDFSV-------YQEGCLSIPDYRADVKRSAFI 110 + + + P+ F NP +++ + EGCLSI + A V R + Sbjct: 91 RGNESDPRERTPLPFRLLANPAYEPVAEEGPSGTLRRVPFFEGCLSIDGWHALVARHHRV 150 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + G A +QHE DHL G L++DH Sbjct: 151 RLTGQDADGAPIDEVLTGWPARIIQHETDHLRGELYLDH 189 >gi|221215452|ref|ZP_03588416.1| peptide deformylase [Burkholderia multivorans CGD1] gi|221164636|gb|EED97118.1| peptide deformylase [Burkholderia multivorans CGD1] Length = 177 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L V+RP+++ ++ ++ ++ +M E M+ +G GLAA QIG+ ++++ + Sbjct: 10 DPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGSNNRY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INPK+ D EGCLS+P R V R A + D Sbjct: 70 PDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGAKIDR 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ ++ R T+ Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165 >gi|115437554|ref|NP_001043323.1| Os01g0555800 [Oryza sativa Japonica Group] gi|113532854|dbj|BAF05237.1| Os01g0555800 [Oryza sativa Japonica Group] Length = 121 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 47/78 (60%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 +V INPK+ T S +++ EGCLS+ YRA V+R + V +D N + + A G A Sbjct: 19 LVIINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQAR 78 Query: 133 CLQHELDHLNGILFIDHL 150 LQHE DHL G L++D + Sbjct: 79 ILQHECDHLEGTLYVDTM 96 >gi|297243759|ref|ZP_06927689.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] gi|298252952|ref|ZP_06976746.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] gi|296888180|gb|EFH26922.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] gi|297533316|gb|EFH72200.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] Length = 217 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 10/154 (6%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + + LI M M G+GLAA QIG+ + VI+ Sbjct: 30 PIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAVIE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P INP + EGCLS+ Y+A +R I + Sbjct: 90 DHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDIQATW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + + G A QHE DHL G L+ID Sbjct: 150 QDEDGKQHSERLHGWPARIFQHETDHLRGELYID 183 >gi|270292421|ref|ZP_06198632.1| peptide deformylase [Streptococcus sp. M143] gi|306824859|ref|ZP_07458203.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|270278400|gb|EFA24246.1| peptide deformylase [Streptococcus sp. M143] gi|304433070|gb|EFM36042.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 136 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L PMV NP ++++ + +EGCLS+ R Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPMVMFNPILLSYKGPYET-EEGCLSLTGVRT-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 R ITV Y D Q Q I G A QHELDHL G Sbjct: 95 TRYETITVSYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|309798745|ref|ZP_07693009.1| polypeptide deformylase [Streptococcus infantis SK1302] gi|308117562|gb|EFO54974.1| polypeptide deformylase [Streptococcus infantis SK1302] Length = 136 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 8/130 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L +VS+P + + + + + LE T +GLAA IGV R+++ ++ PM Sbjct: 12 LSQVSQPASQEDLPLAKDLQDTLEANRET-CVGLAANMIGVQKRVIIFNIG-----MIPM 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP + +F + +EGCLS+ R R ITV Y D + + Q I G A Sbjct: 66 VMFNPVLKSFEGPYET-EEGCLSLTGVRP-TTRYEKITVSYRDIHWKEQTITLTGFPAQI 123 Query: 134 LQHELDHLNG 143 QHELDHL G Sbjct: 124 CQHELDHLEG 133 >gi|324993584|gb|EGC25504.1| peptide deformylase [Streptococcus sanguinis SK405] gi|324995104|gb|EGC27016.1| peptide deformylase [Streptococcus sanguinis SK678] Length = 136 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 9/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + +P E+ + + + L ++ + + + + IGLAA IGV R ++ + P+V Sbjct: 12 LQQPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRAIIF-----LYGLVPVV 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP + + S + +EGCLS+ R +R ITV Y+D N Q Q + GL A Sbjct: 67 MFNPVLRSKSGPYQT-EEGCLSLTGSRP-TQRYQEITVDYLDKNWQQQTMTLKGLPAQIC 124 Query: 135 QHELDHLNGIL 145 QHELDHL GIL Sbjct: 125 QHELDHLEGIL 135 >gi|90961626|ref|YP_535542.1| peptide deformylase [Lactobacillus salivarius UCC118] gi|227890713|ref|ZP_04008518.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] gi|301299265|ref|ZP_07205551.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] gi|122993074|sp|Q1WU76|DEF_LACS1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|90820820|gb|ABD99459.1| Peptide deformylase [Lactobacillus salivarius UCC118] gi|227867651|gb|EEJ75072.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] gi|300214436|gb|ADJ78852.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus salivarius CECT 5713] gi|300853109|gb|EFK80707.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 186 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 25/164 (15%) Query: 11 DPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57 +P LR ++ IE K+ D+M ++N + + + G+GLAA Q+ V R Sbjct: 12 NPTLRARAKAIEFPLSEEDKKLAHDMMEFLENSQNPEIAKKYHLRAGVGLAAPQVDVSKR 71 Query: 58 LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLS----IPDYRADVKRSA 108 + + + P+ V INP I++ S + EG CLS IP Y V R Sbjct: 72 MTAVLVPGIEDDDEPIFKHVLINPTILSESVQLAALGEGEGCLSVDRDIPGY---VPRHD 128 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I +R+ D + + A +QHE+DHLNGILF DH+++ Sbjct: 129 RIKLRWYDLDGNKHVERLRDYPAIVVQHEIDHLNGILFYDHINK 172 >gi|226199013|ref|ZP_03794576.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] gi|225929113|gb|EEH25137.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] Length = 131 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 8/110 (7%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68 DP L V+RP+E N+ ++ L+ +M E M+ +G GLAA QIGV ++++ + Sbjct: 10 DPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGSSERY 69 Query: 69 RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + P V +NP I D EGCLS+P R V R + VRY Sbjct: 70 PEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSR--YRRVRY 117 >gi|125718849|ref|YP_001035982.1| peptide deformylase [Streptococcus sanguinis SK36] gi|125498766|gb|ABN45432.1| Peptide deformylase, putative [Streptococcus sanguinis SK36] gi|324996009|gb|EGC27920.1| peptide deformylase [Streptococcus sanguinis SK678] Length = 210 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E M G+GLAA Q+ + RL+ + + + NP + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|313895677|ref|ZP_07829233.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975803|gb|EFR41262.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] Length = 137 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 8/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + +P E+ +++ +++L+ + S G +GLAA IG R++ + + K+ +V Sbjct: 12 LGQPSEEAVKSDLSIANDLLDTLKSHVGHCVGLAANMIGEKKRIIAVCIG-----KSHLV 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 +N +I+ S + +EGCLS+P R + R +I V Y D + Q G A + Sbjct: 67 MLNAEIVKSSTEQYETEEGCLSLPGQRKTM-RHTWIEVTYRDIKFRKQKNKFSGFTAQII 125 Query: 135 QHELDHLNGIL 145 QHE+DH NGIL Sbjct: 126 QHEIDHCNGIL 136 >gi|327462775|gb|EGF09097.1| peptide deformylase [Streptococcus sanguinis SK1057] Length = 210 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E M G+GLAA Q+ + RL+ + + + NP + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|323353371|ref|ZP_08087904.1| peptide deformylase [Streptococcus sanguinis VMC66] gi|322121317|gb|EFX93080.1| peptide deformylase [Streptococcus sanguinis VMC66] Length = 136 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 9/129 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + + IGLAA +GV R+++ + P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMVGVRKRVIIF-----LYGLVPVVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + +EGCLS+ R +R ITV Y+D N Q Q + GL A QH Sbjct: 69 NPVLRSKSGPYQT-EEGCLSLTGSRP-TQRYQEITVDYLDKNWQQQTMTLKGLPAQICQH 126 Query: 137 ELDHLNGIL 145 ELDHL GIL Sbjct: 127 ELDHLEGIL 135 >gi|21730762|pdb|1LMH|A Chain A, Crystal Structure Of S. Aureus Peptide Deformylase Length = 184 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100 G+GLAA QI + R + + + D K+ +NPKI++ S + + EGCLS+ D Sbjct: 58 GVGLAAPQINISKRXIAVLIPDDGSGKSYDYXLVNPKIVSHSVQEAYLPTGEGCLSVDDN 117 Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A V R IT++ D + G A QHE+DHLNG+ F DH+ + Sbjct: 118 VAGLVHRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVXFYDHIDK 170 >gi|307299459|ref|ZP_07579259.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2] gi|306914858|gb|EFN45245.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2] Length = 183 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 12/156 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M+ +++ +P+LR S P+ S + ++ L+ +G G ++A QIG+ Sbjct: 1 MMTCEVLLLGNPLLRETSSPVSDFRSQETIGQIVMLKQALDEFRKENGFGRGISAPQIGI 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 L R+V ++L + V NP+I+ S + C+S P ++RS + V Y Sbjct: 61 LKRIVALNLG-----QGSFVIANPRIVDRSRATFTMWDDCMSFPHLLIRLERSLSVDVVY 115 Query: 115 MDCNA-QHQIIYADGLLATCLQHELDHLNGILFIDH 149 D +++ D + LQHE+DHL+GIL IDH Sbjct: 116 EDERGIEYEWKGVDQARSELLQHEIDHLDGILAIDH 151 >gi|332359300|gb|EGJ37121.1| peptide deformylase [Streptococcus sanguinis SK49] Length = 210 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E M G+GLAA Q+ + RL+ + + + NP + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|229548080|ref|ZP_04436805.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|257091309|ref|ZP_05585670.1| peptide deformylase [Enterococcus faecalis CH188] gi|312905368|ref|ZP_07764483.1| peptide deformylase [Enterococcus faecalis TX0635] gi|229306766|gb|EEN72762.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|257000121|gb|EEU86641.1| peptide deformylase [Enterococcus faecalis CH188] gi|310631392|gb|EFQ14675.1| peptide deformylase [Enterococcus faecalis TX0635] gi|315162546|gb|EFU06563.1| peptide deformylase [Enterococcus faecalis TX0645] gi|315578554|gb|EFU90745.1| peptide deformylase [Enterococcus faecalis TX0630] Length = 187 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 20/162 (12%) Query: 11 DPILRRVSR----PIEK----INSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR V+ PI K + D++ + N + + + + G+GLAA Q+ + R Sbjct: 12 NPTLRAVAEEVPVPITKEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110 ++ + + + + P V NPKI++ S D + + EGCLS+ D V R I Sbjct: 72 IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173 >gi|52840852|ref|YP_094651.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627963|gb|AAU26704.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 237 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 24/138 (17%) Query: 30 NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKN----PM-VFINP---- 78 +LI+ M + +Y+ G+GLAA Q+ +++ + + + A R N PM + INP Sbjct: 71 DLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRDNAKIYPMHILINPNYEP 130 Query: 79 ----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYADGLLATC 133 +II+ DF EGC S+ V R I ++Y D HQ I +G A Sbjct: 131 LPQARIIS---DF----EGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQI-ENGFYARV 182 Query: 134 LQHELDHLNGILFIDHLS 151 LQHE+DHLNG+L D L+ Sbjct: 183 LQHEIDHLNGVLITDRLT 200 >gi|171058566|ref|YP_001790915.1| peptide deformylase [Leptothrix cholodnii SP-6] gi|170776011|gb|ACB34150.1| peptide deformylase [Leptothrix cholodnii SP-6] Length = 178 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 20/149 (13%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R+++P+ + ++ ++ L+ ++ + M + +G G+AA QIGV +V+ AH Sbjct: 11 DPRLLRIAQPVRRFDTPELHQLVQDLRDTMAAANGAGIAAPQIGVDLAVVIFG---SAH- 66 Query: 70 KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 NP V +NP+I+ SDD EGCLS+P R V R I RY + Sbjct: 67 -NPRYPDAPPVPATVLVNPQIVALSDDEEDGWEGCLSVPGLRGVVPRCTRI--RYSGFDP 123 Query: 120 QHQII--YADGLLATCLQHELDHLNGILF 146 Q+I ADG A +QHE DHL G L+ Sbjct: 124 VGQLIEREADGFHARVVQHECDHLIGKLY 152 >gi|314933288|ref|ZP_07840653.1| peptide deformylase [Staphylococcus caprae C87] gi|313653438|gb|EFS17195.1| peptide deformylase [Staphylococcus caprae C87] Length = 183 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99 G+GLAA QI + R++ + L D + K+ + +NPK++++S + + EGCLS+ + Sbjct: 58 GVGLAAPQIDLAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDEN 117 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R +T++ D + + G A QHE+DHLNG++F D++ Sbjct: 118 IPGLVHRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYI 168 >gi|283783592|ref|YP_003374346.1| peptide deformylase [Gardnerella vaginalis 409-05] gi|283442075|gb|ADB14541.1| peptide deformylase [Gardnerella vaginalis 409-05] Length = 217 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 10/154 (6%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + + LI M M G+GLAA QIG+ + VI+ Sbjct: 30 PIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAVIE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P INP + EGCLS+ Y+A +R + + Sbjct: 90 DHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDVQATW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + + G A QHE DHL G L+ID Sbjct: 150 QDEDGKQHSERLHGWPARIFQHETDHLRGELYID 183 >gi|116511359|ref|YP_808575.1| peptide deformylase [Lactococcus lactis subsp. cremoris SK11] gi|125623399|ref|YP_001031882.1| peptide deformylase [Lactococcus lactis subsp. cremoris MG1363] gi|806487|gb|AAC41454.1| ORF211 [Lactococcus lactis subsp. cremoris] gi|116107013|gb|ABJ72153.1| N-formylmethionyl-tRNA deformylase [Lactococcus lactis subsp. cremoris SK11] gi|124492207|emb|CAL97136.1| putative membrane protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070146|gb|ADJ59546.1| peptide deformylase [Lactococcus lactis subsp. cremoris NZ9000] Length = 211 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 22/136 (16%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI------DLQDHAHRKNPM-------VFINPKII 81 M E M G+GLAA Q+G+L +++ + ++ + + P + N K++ Sbjct: 64 MAEKMGLRGGVGLAANQLGLLKKVIAVLIPNEPEVDEEGNEIPPKEAYKMREIMYNAKVV 123 Query: 82 TFS-DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + S D +V EGCLS+ P Y V R A +TV Y + + + I A C+Q Sbjct: 124 SHSVQDAAVEGGEGCLSVDREVPGY---VVRHARVTVEYYNKEGEKKKIRLKDFPAICVQ 180 Query: 136 HELDHLNGILFIDHLS 151 HE+DH NG++F DH++ Sbjct: 181 HEIDHTNGVMFYDHIN 196 >gi|242242396|ref|ZP_04796841.1| peptide deformylase [Staphylococcus epidermidis W23144] gi|242234152|gb|EES36464.1| peptide deformylase [Staphylococcus epidermidis W23144] Length = 183 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99 G+GLAA QI R++ + L D + K+ + +NPKI+++S + + EGCLS+ + Sbjct: 58 GVGLAAPQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDEN 117 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 118 IPGLVHRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYI 168 >gi|293365837|ref|ZP_06612542.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|307703294|ref|ZP_07640239.1| polypeptide deformylase family protein [Streptococcus oralis ATCC 35037] gi|322375601|ref|ZP_08050113.1| peptide deformylase [Streptococcus sp. C300] gi|291315661|gb|EFE56109.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|307623160|gb|EFO02152.1| polypeptide deformylase family protein [Streptococcus oralis ATCC 35037] gi|321279309|gb|EFX56350.1| peptide deformylase [Streptococcus sp. C300] Length = 136 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L PMV NP ++++ + +EGCLS+ R+ Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPMVMFNPVLLSYIGPYET-EEGCLSLTGVRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 R ITV Y D Q Q I G A QHELDHL G Sbjct: 95 TRYETITVSYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|270157521|ref|ZP_06186178.1| polypeptide deformylase [Legionella longbeachae D-4968] gi|269989546|gb|EEZ95800.1| polypeptide deformylase [Legionella longbeachae D-4968] Length = 219 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 15 RRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKN- 71 + V P+ + + D++ + + L+ + G+GLAA Q+ R++ I + + A R N Sbjct: 40 QEVRFPLSQADKDLIAAMSSKLQKL---GGVGLAAPQVNFPRRIIAIYIPEEAALLRDNI 96 Query: 72 ----PM-VFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 PM + INP DF EGC S+ V R I V Y D Q Sbjct: 97 KSFYPMHIMINPSYTPVEGSAIQHDF----EGCYSVASKSGKVPRYEQINVSYYDELGQF 152 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G + LQHE+DHLNG L ID RL D + + +++ LR Sbjct: 153 HRQTEEGFYSRVLQHEIDHLNGFLIID---RLTPDCVQGSVEEMMTLR 197 >gi|319401586|gb|EFV89796.1| peptide deformylase [Staphylococcus epidermidis FRI909] Length = 183 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99 G+GLAA QI R++ + L D + K+ + +NPKI+++S + + EGCLS+ + Sbjct: 58 GVGLAAPQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDEN 117 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 118 IPGLVHRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYI 168 >gi|325567244|ref|ZP_08143911.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] gi|325158677|gb|EGC70823.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] Length = 187 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 26/165 (15%) Query: 11 DPILRRVSRPIE--------KINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR V++ + + ++M ++N + + + + G+GLAA Q+ + R Sbjct: 12 NPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQLDISKR 71 Query: 58 LVVIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKRS 107 + + + K V NPKI++ S + EG CLS+ P Y V R Sbjct: 72 ITAVLVPSSDPEKAEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGY---VVRH 128 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A IT+ Y D N + + + A +QHE+DHLNG++F +H+++ Sbjct: 129 ARITISYYDINGKKKKVRLKNYPAIVIQHEIDHLNGVMFYNHINQ 173 >gi|289164094|ref|YP_003454232.1| polypeptide deformylase [Legionella longbeachae NSW150] gi|288857267|emb|CBJ11094.1| putative polypeptide deformylase [Legionella longbeachae NSW150] Length = 222 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 15 RRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKN- 71 + V P+ + + D++ + + L+ + G+GLAA Q+ R++ I + + A R N Sbjct: 43 QEVRFPLSQADKDLIAAMSSKLQKL---GGVGLAAPQVNFPRRIIAIYIPEEAALLRDNI 99 Query: 72 ----PM-VFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 PM + INP DF EGC S+ V R I V Y D Q Sbjct: 100 KSFYPMHIMINPSYTPVEGSAIQHDF----EGCYSVASKSGKVPRYEQINVSYYDELGQF 155 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G + LQHE+DHLNG L ID RL D + + +++ LR Sbjct: 156 HRQTEEGFYSRVLQHEIDHLNGFLIID---RLTPDCVQGSVEEMMTLR 200 >gi|116872445|ref|YP_849226.1| peptide deformylase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466166|sp|A0AHG3|DEF_LISW6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116741323|emb|CAK20445.1| polypeptide deformylase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 183 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 22/160 (13%) Query: 12 PILRRVSRPI--------EKINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYRL 58 P LR V+ + +K+ D++ + D L Y G+G+AA Q+ V R+ Sbjct: 13 PALREVASEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQLAVTKRI 72 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112 + I + D R V NPKI + S + EGCLS+ P Y V RS +T+ Sbjct: 73 LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D N + A +QHE+DHLNGI+F DH+++ Sbjct: 130 DAFDENGIPLKLRFKDYPAIVVQHEIDHLNGIMFYDHINK 169 >gi|227517325|ref|ZP_03947374.1| peptide deformylase [Enterococcus faecalis TX0104] gi|227075195|gb|EEI13158.1| peptide deformylase [Enterococcus faecalis TX0104] Length = 187 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 20/162 (12%) Query: 11 DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR V+ + ++ D++ + N + + + + G+GLAA Q+ + R Sbjct: 12 NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110 ++ + + + + P V NPKI++ S D + + EGCLS+ D V R I Sbjct: 72 IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y D + + + A +QHE+DH+NGI+F DH+++ Sbjct: 132 TVSYFDMDGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173 >gi|217073027|gb|ACJ84873.1| unknown [Medicago truncatula] Length = 241 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 17/129 (13%) Query: 11 DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66 DP+L ++ P E ++ + +ID+M+ VM G+GLAA QIGV R++V++ + Sbjct: 86 DPVLHEPAQEVDPSEIMSDKVQKIIDDMIRVMRKAPGVGLAAPQIGVSSRIIVLEDTEEF 145 Query: 67 ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A ++P +V +NPK+ + S +++ EGCLS+ +RA V+R + V Sbjct: 146 ISYAPKEVLKAQDRHPFDLLVILNPKLKSTSKRTALFFEGCLSVDGFRAVVERHLDVEVT 205 Query: 114 YMDCNAQHQ 122 +D N Sbjct: 206 GLDRNGDQS 214 >gi|302340674|ref|YP_003805880.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293] gi|301637859|gb|ADK83286.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293] Length = 175 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 8/120 (6%) Query: 32 IDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV 89 + LE + G G +AA QIG+ R++ + H K +F NP I + S++ + Sbjct: 35 LQKALEAFRAEKGFGRAIAAPQIGISKRVIAL----HLDGKTFSIF-NPVITSHSEETFL 89 Query: 90 YQEGCLSIPDYRADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFID 148 + C+S PD V+R I++ Y D +H+ D L+ LQHE+DHL+GIL ID Sbjct: 90 LWDDCMSFPDLLVKVRRYTSISIVYQDALGREHRWEKPDRSLSELLQHEIDHLDGILAID 149 >gi|225867820|ref|YP_002743768.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus] gi|259645185|sp|C0MFA6|DEF_STRS7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225701096|emb|CAW97934.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus] Length = 204 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 25/169 (14%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVM-YSTD-----------GIGLAAVQIGVLYR 57 +P LR V++ +E ++ D + L + M++ + +S D G+GLAA QI V R Sbjct: 24 NPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQIDVSKR 83 Query: 58 LVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY-RADVK 105 ++ + + + NP V NPKI++ S D EGCLS+ V Sbjct: 84 IIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRVVEGYVV 143 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 R A +TV Y D + + I G A +QHE+DH+NG+LF D ++ K Sbjct: 144 RHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKK 192 >gi|78776817|ref|YP_393132.1| formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251] gi|78497357|gb|ABB43897.1| Formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251] Length = 283 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 5/159 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K +V +P P + + + N +I +LI+++ + + + LAA QIG + +VV+ Sbjct: 22 KEIVTYPTPPSVQYATDVRVFNEEIESLIEDLKDTIKANSLEALAAFQIGSYFNIVVVA- 80 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 QD + INP+II + ++ P+ A+V R I++ Y D Q Sbjct: 81 QDGGEF---LELINPRIINPHGRVTTIEKTAY-FPNLSAEVTRYETISLVYQDRELQQHS 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + ADG + LQ ++D+ G F++ L+++++ + KK+ Sbjct: 137 LKADGAFSILLQRKVDYTFGSTFLNKLNKVEKKLFQKKL 175 >gi|259046789|ref|ZP_05737190.1| peptide deformylase [Granulicatella adiacens ATCC 49175] gi|259036557|gb|EEW37812.1| peptide deformylase [Granulicatella adiacens ATCC 49175] Length = 186 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 18/175 (10%) Query: 4 KPLVIFPDPILR-RVSRPIEKINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V+ P LR R + ++ + L MLE ++++ G+GLAA Sbjct: 5 KDIVLEGHPALRKRAEKLTFPLSPEHQELAKEMLEFLHNSQNPEIAEKYGLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 Q+G +++ + + + + V+INP+I+ S + + EGCLS+ + V Sbjct: 65 QLGKSIQMIALLVPGFEEEEAILDEVWINPRIMRESVKKACLKDGEGCLSVNREVPGIVL 124 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R ITV+Y D N + + A +QHE+DHLNG++F DH+++ + I K Sbjct: 125 RPERITVKYQDVNGDEFVRTLNDYEAIVVQHEIDHLNGVMFYDHINQTQPMYIPK 179 >gi|168483572|ref|ZP_02708524.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00] gi|172043063|gb|EDT51109.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00] Length = 136 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP +++F + +EGCLS+ R+ Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR I V Y D Q Q I G A QHELDHL G Sbjct: 95 KRYETIRVAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|326511637|dbj|BAJ91963.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326514272|dbj|BAJ92286.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 121 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Query: 72 PMVF----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P++F INPK+ S + + EGCLS+ YRA V+R + V +D N + + A Sbjct: 14 PLIFLWVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLDVEVSGLDRNGRPMKVEAS 73 Query: 128 GLLATCLQHELDHLNGILFIDHL 150 G A LQHE DHL G L++D + Sbjct: 74 GWQARILQHECDHLEGTLYVDKM 96 >gi|329571126|gb|EGG52832.1| peptide deformylase [Enterococcus faecalis TX1467] Length = 187 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 20/162 (12%) Query: 11 DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR V+ + ++ D++ + N + + + + G+GLAA Q+ + R Sbjct: 12 NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110 ++ + + + + P V NPKI++ S D + + EGCLS+ D V R I Sbjct: 72 IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHVKI 131 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173 >gi|172058021|ref|YP_001814481.1| peptide deformylase [Exiguobacterium sibiricum 255-15] gi|171990542|gb|ACB61464.1| peptide deformylase [Exiguobacterium sibiricum 255-15] Length = 179 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 13/146 (8%) Query: 17 VSRPIEKINSDIMNLI---------DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 V+ P+ + + + M L+ D + E GIGLAA QIGV R+ I LQD Sbjct: 22 VTFPLSEEDKETMRLMMEYLANSQDDELAEKYDLRSGIGLAAPQIGVNKRMFAIRLQDGD 81 Query: 68 HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQII 124 ++ NPKI++ S + EGCLS+ + V R IT+ +D N + Sbjct: 82 DILEFGIY-NPKIVSHSVEQTYLAGGEGCLSVDREVEGHVPRYMRITLSGIDHNGNPVKL 140 Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150 GL A QHE DHL+GI+F D + Sbjct: 141 RLKGLKAVVCQHEYDHLDGIMFYDRI 166 >gi|329667535|gb|AEB93483.1| peptide deformylase [Lactobacillus johnsonii DPC 6026] Length = 181 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 17/159 (10%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P+LR+V++P+ ++ + L D+M++ + ++ G+GLAA Q+G + Sbjct: 9 NPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQ 68 Query: 58 LVVIDL-QDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSI-PDYRADVKRSAFITVR 113 + + + D VF+NPKI++ S + EGCLS+ D V R + +R Sbjct: 69 MAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRPDKLKIR 128 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + + I A HE+DHLNG LF D +++ Sbjct: 129 YYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 167 >gi|42518919|ref|NP_964849.1| peptide deformylase [Lactobacillus johnsonii NCC 533] gi|227889778|ref|ZP_04007583.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] gi|268319683|ref|YP_003293339.1| peptide deformylase [Lactobacillus johnsonii FI9785] gi|81703847|sp|Q74JW2|DEF_LACJO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|41583205|gb|AAS08815.1| peptide deformylase [Lactobacillus johnsonii NCC 533] gi|227849642|gb|EEJ59728.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] gi|262398058|emb|CAX67072.1| peptide deformylase [Lactobacillus johnsonii FI9785] Length = 184 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 17/159 (10%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P+LR+V++P+ ++ + L D+M++ + ++ G+GLAA Q+G + Sbjct: 12 NPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQ 71 Query: 58 LVVIDL-QDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSI-PDYRADVKRSAFITVR 113 + + + D VF+NPKI++ S + EGCLS+ D V R + +R Sbjct: 72 MAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRPDKLKIR 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + + I A HE+DHLNG LF D +++ Sbjct: 132 YYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|241667120|ref|ZP_04754698.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875674|ref|ZP_05248384.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841695|gb|EET20109.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 201 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 14/149 (9%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I +S+I N+I M E M +GIGLAA QIG +++ +I+ D ++ Sbjct: 13 NQVLYQKCKPVTDIQSSEIQNIIAEMREKM-QGNGIGLAANQIGYPHQIFMIEF-DSSNA 70 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + P+ VFINPKI S+ + GCLS + K + + + Y N Sbjct: 71 RYPLNFDSVPFQVFINPKITKASEKRVGFWHGCLSALGGKRG-KLATYKEIEYEAYNQHG 129 Query: 122 QIIYA--DGLLATCLQHELDHLNGILFID 148 + I D + A QHE +HL G +++D Sbjct: 130 KKITGKLDSIAAVIFQHEFNHLLGSVYVD 158 >gi|33357292|pdb|1LM4|A Chain A, Structure Of Peptide Deformylase From Staphylococcus Aureus At 1.45 A gi|33357293|pdb|1LM4|B Chain B, Structure Of Peptide Deformylase From Staphylococcus Aureus At 1.45 A Length = 194 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100 G+GLAA QI + R++ + + D K+ + +NPKI++ S + + EG LS+ D Sbjct: 69 GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDN 128 Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A V R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 129 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 181 >gi|51247225|pdb|1Q1Y|A Chain A, Crystal Structures Of Peptide Deformylase From Staphylococcus Aureus Complexed With Actinonin Length = 191 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100 G+GLAA QI + R++ + + D K+ + +NPKI++ S + + EG LS+ D Sbjct: 58 GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDN 117 Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A V R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 118 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|194323397|ref|ZP_03057174.1| polypeptide deformylase [Francisella tularensis subsp. novicida FTE] gi|194322252|gb|EDX19733.1| polypeptide deformylase [Francisella tularensis subsp. novicida FTE] Length = 186 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 16/142 (11%) Query: 19 RPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM---- 73 +P+ I S +I N+I M E M +GIGLAA QIG Y++ +I+ D ++ + P Sbjct: 6 KPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNARYPFSFDS 63 Query: 74 ----VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQHQIIYA-- 126 VFINPKI S + GCLS + + R K + + + Y N + I Sbjct: 64 VPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQHGEKITGKL 121 Query: 127 DGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 122 DSIAAVIFQHEFNHLLGSVYVD 143 >gi|309775748|ref|ZP_07670744.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] gi|308916511|gb|EFP62255.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] Length = 184 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 17/119 (14%) Query: 44 GIGLAAVQIGVLYRLVVI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCL 95 +G+AA+Q+GV R++ + D+ ++A +NP+II+ S + + EGCL Sbjct: 59 AVGIAAIQLGVAKRMLAVVVPNDEDIDEYA-------LVNPRIISESVQRAYLKNGEGCL 111 Query: 96 SIP-DYRADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 S+ ++ V R+A ITV+ D + +I I A LA LQHE+DH +G LF D +++ Sbjct: 112 SVEKEHEGIVPRAARITVKGYDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170 >gi|148992559|ref|ZP_01822227.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|149003222|ref|ZP_01828118.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|149011789|ref|ZP_01832985.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|168488787|ref|ZP_02712986.1| polypeptide deformylase [Streptococcus pneumoniae SP195] gi|237650234|ref|ZP_04524486.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974] gi|237820884|ref|ZP_04596729.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2] gi|147758682|gb|EDK65679.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|147764220|gb|EDK71152.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|147928576|gb|EDK79590.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|183572696|gb|EDT93224.1| polypeptide deformylase [Streptococcus pneumoniae SP195] gi|332072344|gb|EGI82827.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA17570] Length = 136 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP +++F + +EGCLS+ R+ Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR I V Y D Q Q I G A QHELDHL G Sbjct: 95 KRYETIRVAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|116334013|ref|YP_795540.1| peptide deformylase [Lactobacillus brevis ATCC 367] gi|122269303|sp|Q03QL3|DEF_LACBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116099360|gb|ABJ64509.1| peptide deformylase [Lactobacillus brevis ATCC 367] Length = 186 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 6/115 (5%) Query: 44 GIGLAAVQIGV---LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI- 97 G+GLAA Q+GV + ++V +++ V INP II+ S EG CLS+ Sbjct: 58 GVGLAAPQVGVSKKMASVLVPPVEEDGKSPFTDVIINPVIISESVQAGALTEGEGCLSVD 117 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D V R IT+RY D N + + A QHE+DHL+G LF DH+++ Sbjct: 118 KDVPGFVPRHDRITLRYYDVNGEKHQVRLKNYPAIVCQHEIDHLHGTLFYDHINK 172 >gi|224476324|ref|YP_002633930.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420931|emb|CAL27745.1| putative polypeptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] Length = 162 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV LR+ + ++K + + L+ ++ + +Y T+ L+A QIGV + + Sbjct: 1 MAVKQLVPANSSKLRKPAAEVKKFDDSLKKLLLDIEDTLYDTEASALSAPQIGVSLQAAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + INP II SD+ EG +S PD V RS I V+ D + Sbjct: 61 IDME----AEGLLQLINPTIIRQSDETVTDLEGSISFPDVFGTVTRSQMIVVQSYDLHGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A +A + H +D L GI F + + + Sbjct: 117 KVELTAYDDVARMILHIVDQLKGIPFTEKMEK 148 >gi|125717323|ref|YP_001034456.1| peptide deformylase [Streptococcus sanguinis SK36] gi|125497240|gb|ABN43906.1| Formylmethionine deformylase, putative [Streptococcus sanguinis SK36] Length = 136 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 IGLAA IGV R+++ + P+V NP +++ S + +EGCLS+ R Sbjct: 42 IGLAANMIGVRKRVIIF-----LYGLVPVVMFNPVLLSKSGPYQT-EEGCLSLVGSRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R ITV Y+D N Q Q + GL A QHELDHL GI+ Sbjct: 95 QRYQEITVDYLDKNWQQQTMTLKGLPAQICQHELDHLEGII 135 >gi|293366921|ref|ZP_06613596.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318896|gb|EFE59267.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] Length = 180 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99 G+GLAA QI R++ + L D + K+ + +NPKI+++S + + EGCLS+ + Sbjct: 55 GVGLAAPQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDEN 114 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 115 IPGLVHRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYI 165 >gi|325686575|gb|EGD28601.1| peptide deformylase [Streptococcus sanguinis SK72] Length = 210 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + + NP + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|323350520|ref|ZP_08086182.1| peptide deformylase [Streptococcus sanguinis VMC66] gi|322123202|gb|EFX94887.1| peptide deformylase [Streptococcus sanguinis VMC66] Length = 210 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP---------MVFINPKIITFS- 84 M E M G+GLAA Q+ + RL+ + + + + + NPKI+ S Sbjct: 67 MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGSPPKEAYSLQTLMYNPKIVAHSV 126 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+D Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 184 HINGIMFYDRINE 196 >gi|27467707|ref|NP_764344.1| peptide deformylase [Staphylococcus epidermidis ATCC 12228] gi|57866596|ref|YP_188262.1| peptide deformylase [Staphylococcus epidermidis RP62A] gi|251810544|ref|ZP_04825017.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|282876551|ref|ZP_06285416.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|32129485|sp|Q8CPN4|DEF_STAES RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81674995|sp|Q5HQ78|DEF_STAEQ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|27315251|gb|AAO04386.1|AE016746_176 formylmethionine deformylase [Staphylococcus epidermidis ATCC 12228] gi|57637254|gb|AAW54042.1| peptide deformylase [Staphylococcus epidermidis RP62A] gi|251805955|gb|EES58612.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|281294639|gb|EFA87168.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|329732863|gb|EGG69209.1| peptide deformylase [Staphylococcus epidermidis VCU144] gi|329734227|gb|EGG70543.1| peptide deformylase [Staphylococcus epidermidis VCU028] gi|329735535|gb|EGG71823.1| peptide deformylase [Staphylococcus epidermidis VCU045] Length = 183 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99 G+GLAA QI R++ + L D + K+ + +NPKI+++S + + EGCLS+ + Sbjct: 58 GVGLAAPQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDEN 117 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 118 IPGLVHRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYI 168 >gi|330470685|ref|YP_004408428.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813656|gb|AEB47828.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 504 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 11/148 (7%) Query: 13 ILRRVSRPIE--KINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIGVLYRLVVIDL 63 +LR+ +RP + + +ID + + + D G+G+AA Q+ + VI Sbjct: 339 LLRQPARPFDLPREARAAREVIDRLTDALARLDELHPFAKGVGIAAPQLEIGRAAAVIRP 398 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D P+V +NP+++ + D EGCLS D+R V R + V + + + I Sbjct: 399 PDRT--AEPLVLLNPRVVDAAPDTDEQYEGCLSFFDHRGLVPRPLRLDVEHAQLDGRRVI 456 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + +A + HE+DHL G L++D ++ Sbjct: 457 TSFEFGMARLVAHEIDHLEGRLYVDRMA 484 >gi|227529038|ref|ZP_03959087.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] gi|227351050|gb|EEJ41341.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] Length = 190 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 20/161 (12%) Query: 11 DPILRR----VSRPIEKINSDIMNLIDNMLEVMYSTD---------GIGLAAVQIGVLYR 57 DP+LR+ V+ P+ + + + LEV + G+GLAA Q+G+ + Sbjct: 15 DPVLRKRAAKVTFPLSEEDQEFAKRAMEYLEVSQDPELCKKYKLRAGVGLAAPQVGISKQ 74 Query: 58 LVVIDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFI 110 + + + +D V INP I++ S + EG CLS+ D V R I Sbjct: 75 MAAVLVPSLNEDDDQPSFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRI 134 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 T+RY D + + A QHE+DHL+G+LF DH++ Sbjct: 135 TLRYQDVKGETHQLRLKNYPAIVCQHEIDHLHGVLFYDHIN 175 >gi|15672542|ref|NP_266716.1| peptide deformylase [Lactococcus lactis subsp. lactis Il1403] gi|281491026|ref|YP_003353006.1| peptide deformylase [Lactococcus lactis subsp. lactis KF147] gi|12723447|gb|AAK04658.1|AE006290_3 polypeptide deformylase [Lactococcus lactis subsp. lactis Il1403] gi|281374784|gb|ADA64304.1| Peptide deformylase [Lactococcus lactis subsp. lactis KF147] gi|326406061|gb|ADZ63132.1| peptide deformylase [Lactococcus lactis subsp. lactis CV56] Length = 211 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 22/136 (16%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI------DLQDHAHRKNPM-------VFINPKII 81 M E M G+GLAA Q+G+L +++ + ++ + + P + N K++ Sbjct: 64 MAEKMGLRGGVGLAANQLGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVV 123 Query: 82 TFS-DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + S D +V EGCLS+ P Y V R A +TV Y + + + I A C+Q Sbjct: 124 SHSVQDAAVEGGEGCLSVDREVPGY---VVRHARVTVEYYNKEGEKKKIRLKDFPAICVQ 180 Query: 136 HELDHLNGILFIDHLS 151 HE+DH NG++F DH++ Sbjct: 181 HEIDHTNGVMFYDHIN 196 >gi|301775659|ref|XP_002923264.1| PREDICTED: peptide deformylase, mitochondrial-like [Ailuropoda melanoleuca] gi|281349917|gb|EFB25501.1| hypothetical protein PANDA_012363 [Ailuropoda melanoleuca] Length = 141 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 14/120 (11%) Query: 45 IGLAAVQIGVLYRLVVIDLQD-----------HAHRKNPM---VFINPKIITFSDDFSVY 90 +GL+A Q+GV +++ ++ + A + P VF+NP + + Sbjct: 7 VGLSAPQLGVPLQVLALEFPEALFRACAPGLREARQMEPFPLRVFVNPSLRVLDSRLVTF 66 Query: 91 QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 EGC S+ + A V R + + +D + + A G A +QHE+DHL G LFID + Sbjct: 67 PEGCESVAGFLACVPRFQAVQISGLDPKGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 126 >gi|169404548|pdb|2OS1|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E. Faecalis And S. Pyogenes Length = 188 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 20/162 (12%) Query: 11 DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR V+ + ++ D++ + N + + + + G+GLAA Q+ + R Sbjct: 12 NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110 ++ + + + + P V NPKI++ S D + + EGCLS+ D V R I Sbjct: 72 IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173 >gi|157150181|ref|YP_001449640.1| peptide deformylase [Streptococcus gordonii str. Challis substr. CH1] gi|189083079|sp|A8AV30|DEF_STRGC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157074975|gb|ABV09658.1| polypeptide deformylase [Streptococcus gordonii str. Challis substr. CH1] Length = 204 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 18/143 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--DHAHRKNPM-------VFINPKIITFS- 84 M E + G+GLAA Q+ + R++ + L + + +P V NPKI+ S Sbjct: 61 MAEKLGLRGGVGLAAPQLDISRRIIAVLLPNPEDENGNSPQEAYALKEVMYNPKIVAHSV 120 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D N + + G A +QHE+D Sbjct: 121 QDAALADGEGCLSVDRDVPGY---VVRHARVTVDYFDKNGEKHRVKLKGYKAIVVQHEID 177 Query: 140 HLNGILFIDHLSRLKRDMITKKM 162 H+NGI+F D ++ I + M Sbjct: 178 HINGIMFYDRINETDPFAIKEGM 200 >gi|328868869|gb|EGG17247.1| hypothetical protein DFA_08237 [Dictyostelium fasciculatum] Length = 201 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + P+V PK IT ++ V+ E CLS+P Y V R+ + + D + I ADGL Sbjct: 91 QTPLV-TTPKKITANNTIDVW-ESCLSVPSYYGRVTRARKCIINFWDITGTPRSIEADGL 148 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMI 158 ++ CLQHE DHL G +F + L D++ Sbjct: 149 ISACLQHENDHLLGRVFFERLQNSVNDLV 177 >gi|324990225|gb|EGC22163.1| peptide deformylase [Streptococcus sanguinis SK353] Length = 136 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 9/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 12 LQQPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVV 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP + + S + +EGCLS+ R +R ITV Y+D N Q + + GL A Sbjct: 67 MFNPVLRSKSGPYQT-EEGCLSLTGSRP-TQRYQEITVDYLDKNWQQRTMTLKGLPAQIC 124 Query: 135 QHELDHLNGIL 145 QHELDHL GIL Sbjct: 125 QHELDHLEGIL 135 >gi|313900498|ref|ZP_07833991.1| peptide deformylase [Clostridium sp. HGF2] gi|312954560|gb|EFR36235.1| peptide deformylase [Clostridium sp. HGF2] Length = 137 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 10/140 (7%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQD 65 I D L +SR E D + + ++ + + ++ +G+AA IGVL R++V QD Sbjct: 5 IVKDTFL--LSRRCEAATLDDLQTVQDLQDTLQAHADHCVGMAANMIGVLKRIIV--FQD 60 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + +NP II D +EGCL + + R I V YMDC + +I Sbjct: 61 GG---SYVSMLNPVIIKTGDKRYTAEEGCLCHSTQKKAL-RYEKIKVSYMDCCGKKKIKT 116 Query: 126 ADGLLATCLQHELDHLNGIL 145 +G A +QHELDH +GIL Sbjct: 117 YEGFCAQIIQHELDHCDGIL 136 >gi|257420477|ref|ZP_05597467.1| polypeptide deformylase [Enterococcus faecalis X98] gi|257162301|gb|EEU92261.1| polypeptide deformylase [Enterococcus faecalis X98] gi|315154772|gb|EFT98788.1| peptide deformylase [Enterococcus faecalis TX0043] Length = 187 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 20/162 (12%) Query: 11 DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR V+ + ++ D++ + N + + + + G+GLAA Q+ + R Sbjct: 12 NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDL--QDHAHRKNPM--VFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110 ++ + + D + K + V NPKI++ S D + + EGCLS+ D V R I Sbjct: 72 IIAVHVPSNDPENEKPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173 >gi|29377524|ref|NP_816678.1| peptide deformylase [Enterococcus faecalis V583] gi|227554489|ref|ZP_03984536.1| peptide deformylase [Enterococcus faecalis HH22] gi|229547504|ref|ZP_04436229.1| peptide deformylase [Enterococcus faecalis TX1322] gi|255970735|ref|ZP_05421321.1| peptide deformylase [Enterococcus faecalis T1] gi|255974309|ref|ZP_05424895.1| peptide deformylase [Enterococcus faecalis T2] gi|256618174|ref|ZP_05475020.1| peptide deformylase [Enterococcus faecalis ATCC 4200] gi|256761103|ref|ZP_05501683.1| peptide deformylase [Enterococcus faecalis T3] gi|256854744|ref|ZP_05560108.1| polypeptide deformylase [Enterococcus faecalis T8] gi|256958348|ref|ZP_05562519.1| peptide deformylase [Enterococcus faecalis DS5] gi|256960417|ref|ZP_05564588.1| peptide deformylase [Enterococcus faecalis Merz96] gi|256962908|ref|ZP_05567079.1| peptide deformylase [Enterococcus faecalis HIP11704] gi|257078342|ref|ZP_05572703.1| peptide deformylase [Enterococcus faecalis JH1] gi|257080527|ref|ZP_05574888.1| peptide deformylase [Enterococcus faecalis E1Sol] gi|257083262|ref|ZP_05577623.1| peptide deformylase [Enterococcus faecalis Fly1] gi|257088182|ref|ZP_05582543.1| peptide deformylase [Enterococcus faecalis D6] gi|257417200|ref|ZP_05594194.1| peptide deformylase [Enterococcus faecalis AR01/DG] gi|257417917|ref|ZP_05594911.1| peptide deformylase [Enterococcus faecalis T11] gi|293383918|ref|ZP_06629820.1| peptide deformylase [Enterococcus faecalis R712] gi|293388312|ref|ZP_06632826.1| peptide deformylase [Enterococcus faecalis S613] gi|294780198|ref|ZP_06745570.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|300861505|ref|ZP_07107589.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|307270427|ref|ZP_07551728.1| peptide deformylase [Enterococcus faecalis TX4248] gi|307273932|ref|ZP_07555144.1| peptide deformylase [Enterococcus faecalis TX0855] gi|307276707|ref|ZP_07557824.1| peptide deformylase [Enterococcus faecalis TX2134] gi|307278203|ref|ZP_07559285.1| peptide deformylase [Enterococcus faecalis TX0860] gi|307286413|ref|ZP_07566519.1| peptide deformylase [Enterococcus faecalis TX0109] gi|307292087|ref|ZP_07571954.1| peptide deformylase [Enterococcus faecalis TX0411] gi|312901914|ref|ZP_07761177.1| peptide deformylase [Enterococcus faecalis TX0470] gi|312906741|ref|ZP_07765741.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|312910721|ref|ZP_07769560.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|312953167|ref|ZP_07772014.1| peptide deformylase [Enterococcus faecalis TX0102] gi|39930870|sp|Q82ZJ0|DEF_ENTFA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|29344991|gb|AAO82748.1| polypeptide deformylase [Enterococcus faecalis V583] gi|227176399|gb|EEI57371.1| peptide deformylase [Enterococcus faecalis HH22] gi|229307346|gb|EEN73333.1| peptide deformylase [Enterococcus faecalis TX1322] gi|255961753|gb|EET94229.1| peptide deformylase [Enterococcus faecalis T1] gi|255967181|gb|EET97803.1| peptide deformylase [Enterococcus faecalis T2] gi|256597701|gb|EEU16877.1| peptide deformylase [Enterococcus faecalis ATCC 4200] gi|256682354|gb|EEU22049.1| peptide deformylase [Enterococcus faecalis T3] gi|256710304|gb|EEU25348.1| polypeptide deformylase [Enterococcus faecalis T8] gi|256948844|gb|EEU65476.1| peptide deformylase [Enterococcus faecalis DS5] gi|256950913|gb|EEU67545.1| peptide deformylase [Enterococcus faecalis Merz96] gi|256953404|gb|EEU70036.1| peptide deformylase [Enterococcus faecalis HIP11704] gi|256986372|gb|EEU73674.1| peptide deformylase [Enterococcus faecalis JH1] gi|256988557|gb|EEU75859.1| peptide deformylase [Enterococcus faecalis E1Sol] gi|256991292|gb|EEU78594.1| peptide deformylase [Enterococcus faecalis Fly1] gi|256996212|gb|EEU83514.1| peptide deformylase [Enterococcus faecalis D6] gi|257159028|gb|EEU88988.1| peptide deformylase [Enterococcus faecalis ARO1/DG] gi|257159745|gb|EEU89705.1| peptide deformylase [Enterococcus faecalis T11] gi|291078745|gb|EFE16109.1| peptide deformylase [Enterococcus faecalis R712] gi|291082322|gb|EFE19285.1| peptide deformylase [Enterococcus faecalis S613] gi|294452741|gb|EFG21171.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|295114395|emb|CBL33032.1| peptide deformylase [Enterococcus sp. 7L76] gi|300848966|gb|EFK76719.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|306496869|gb|EFM66419.1| peptide deformylase [Enterococcus faecalis TX0411] gi|306502426|gb|EFM71699.1| peptide deformylase [Enterococcus faecalis TX0109] gi|306505192|gb|EFM74380.1| peptide deformylase [Enterococcus faecalis TX0860] gi|306506606|gb|EFM75759.1| peptide deformylase [Enterococcus faecalis TX2134] gi|306509411|gb|EFM78469.1| peptide deformylase [Enterococcus faecalis TX0855] gi|306513205|gb|EFM81836.1| peptide deformylase [Enterococcus faecalis TX4248] gi|310627389|gb|EFQ10672.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|310628910|gb|EFQ12193.1| peptide deformylase [Enterococcus faecalis TX0102] gi|311288984|gb|EFQ67540.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|311290981|gb|EFQ69537.1| peptide deformylase [Enterococcus faecalis TX0470] gi|315027683|gb|EFT39615.1| peptide deformylase [Enterococcus faecalis TX2137] gi|315028233|gb|EFT40165.1| peptide deformylase [Enterococcus faecalis TX4000] gi|315031247|gb|EFT43179.1| peptide deformylase [Enterococcus faecalis TX0017] gi|315036534|gb|EFT48466.1| peptide deformylase [Enterococcus faecalis TX0027] gi|315143298|gb|EFT87314.1| peptide deformylase [Enterococcus faecalis TX2141] gi|315149069|gb|EFT93085.1| peptide deformylase [Enterococcus faecalis TX0012] gi|315152916|gb|EFT96932.1| peptide deformylase [Enterococcus faecalis TX0031] gi|315157489|gb|EFU01506.1| peptide deformylase [Enterococcus faecalis TX0312] gi|315164500|gb|EFU08517.1| peptide deformylase [Enterococcus faecalis TX1302] gi|315167177|gb|EFU11194.1| peptide deformylase [Enterococcus faecalis TX1341] gi|315171029|gb|EFU15046.1| peptide deformylase [Enterococcus faecalis TX1342] gi|315173457|gb|EFU17474.1| peptide deformylase [Enterococcus faecalis TX1346] gi|315573357|gb|EFU85548.1| peptide deformylase [Enterococcus faecalis TX0309B] gi|315581211|gb|EFU93402.1| peptide deformylase [Enterococcus faecalis TX0309A] gi|323479000|gb|ADX78439.1| peptide deformylase [Enterococcus faecalis 62] gi|327536189|gb|AEA95023.1| peptide deformylase [Enterococcus faecalis OG1RF] Length = 187 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 20/162 (12%) Query: 11 DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR V+ + ++ D++ + N + + + + G+GLAA Q+ + R Sbjct: 12 NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110 ++ + + + + P V NPKI++ S D + + EGCLS+ D V R I Sbjct: 72 IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173 >gi|195978856|ref|YP_002124100.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689838|sp|B4U576|DEF_STREM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|195975561|gb|ACG63087.1| peptide deformylase Pdf [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 204 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 25/166 (15%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVM-YSTD-----------GIGLAAVQIGVLYR 57 +P LR V++ +E ++ D + L + M++ + +S D G+GLAA QI V R Sbjct: 24 NPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQIDVSKR 83 Query: 58 LVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY-RADVK 105 ++ + + + NP V NPKI++ S D EGCLS+ V Sbjct: 84 IIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRVVEGYVV 143 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A +TV Y D + + I G A +QHE+DH+NG+LF D ++ Sbjct: 144 RHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189 >gi|315148893|gb|EFT92909.1| peptide deformylase [Enterococcus faecalis TX4244] Length = 187 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 20/162 (12%) Query: 11 DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR V+ + ++ D++ + N + + + + G+GLAA Q+ + R Sbjct: 12 NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71 Query: 58 LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110 ++ + + + + P V NPKI++ S D + + EGCLS+ D V R I Sbjct: 72 IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDWDVPGYVVRHNKI 131 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173 >gi|222150958|ref|YP_002560111.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402] gi|254767593|sp|B9EB04|DEF_MACCJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|222120080|dbj|BAH17415.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402] Length = 184 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 21/160 (13%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRL 58 P LR + + ++++ LID+MLE + + G+G+AA Q+ R+ Sbjct: 13 PTLRAKAEEVPLPLSTEDRQLIDDMLEFLKMSQDEEQSRKYQLRSGVGIAAPQLNHKKRM 72 Query: 59 VVIDLQDHAHRKNPMV---FINPKIITFSDDFSV--YQEGCLSIPDYRAD-VKRSAFITV 112 +VI D +K V INPKII+ S + S EGCLS+ + V R A ITV Sbjct: 73 LVIHFYDE--KKGDYVTHQLINPKIISHSVEKSYLPTGEGCLSVDEAVPGIVHRYARITV 130 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + + + A QHE+DHLNG++F DH+ + Sbjct: 131 KAYTPDGEEVKLRLKDFSAIVAQHEIDHLNGVMFYDHIDK 170 >gi|221066139|ref|ZP_03542244.1| peptide deformylase [Comamonas testosteroni KF-1] gi|220711162|gb|EED66530.1| peptide deformylase [Comamonas testosteroni KF-1] Length = 179 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 11/145 (7%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R+++P+ + ++D ++L+ L M++ +G GLAA QIG ++VV + R Sbjct: 11 DPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEPNPR 70 Query: 70 --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP I ++ + EGCLS+P RA V R + VRY + Sbjct: 71 YPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPR--WSKVRYTGFDLYGDP 128 Query: 124 I--YADGLLATCLQHELDHLNGILF 146 I DG A +QHE DHL G L+ Sbjct: 129 IDRTVDGFHARVVQHECDHLWGKLY 153 >gi|13637693|sp|Q48661|DEF_LACLA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase Length = 196 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 22/136 (16%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI------DLQDHAHRKNPM-------VFINPKII 81 M E M G+GLAA Q+G+L +++ + ++ + + P + N K++ Sbjct: 49 MAEKMGLRGGVGLAANQLGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVV 108 Query: 82 TFS-DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + S D +V EGCLS+ P Y V R A +TV Y + + + I A C+Q Sbjct: 109 SHSVQDAAVEGGEGCLSVDREVPGY---VVRHARVTVEYYNKEGEKKKIRLKDFPAICVQ 165 Query: 136 HELDHLNGILFIDHLS 151 HE+DH NG++F DH++ Sbjct: 166 HEIDHTNGVMFYDHIN 181 >gi|327473594|gb|EGF19014.1| peptide deformylase [Streptococcus sanguinis SK408] Length = 136 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 9/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 12 LQQPSEQASREDLYLAQDLQDTLQANQENCIGLAANMIGVRKRVIIF-----LYGLVPIV 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP + + S + +EGCLS+ R +R ITV Y+D N Q Q + GL A Sbjct: 67 MFNPVLRSKSGPYQT-EEGCLSLVGSRP-TQRYQEITVDYLDKNWQQQTMTLKGLPAQIC 124 Query: 135 QHELDHLNGIL 145 QHELDHL GI+ Sbjct: 125 QHELDHLEGII 135 >gi|290476476|ref|YP_003469381.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] gi|289175814|emb|CBJ82617.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] Length = 96 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 5/93 (5%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64 ++ PD LR+ + ++ +I LID+ML+ MY TD GIGLAA Q+G +++ID+ Sbjct: 6 ILTIPDERLRQKCIDVTHVD-EIQTLIDDMLDTMYDTDNGIGLAAPQVGRKEAVLIIDI- 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97 +R PMV +NPKI+ + V QEGCLSI Sbjct: 64 -SPNRDQPMVLVNPKIVE-KERRVVNQEGCLSI 94 >gi|225871270|ref|YP_002747217.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047] gi|254767601|sp|C0M9E1|DEF_STRE4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225700674|emb|CAW95260.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047] Length = 204 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 25/166 (15%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVM-YSTD-----------GIGLAAVQIGVLYR 57 +P LR V++ +E ++ D + L + M++ + +S D G+GLAA QI V R Sbjct: 24 NPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQIDVSKR 83 Query: 58 LVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY-RADVK 105 ++ + + + NP V NPKI++ S D EGCLS+ V Sbjct: 84 IIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRVVEGYVV 143 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A +TV Y D + + I G A +QHE+DH+NG+LF D ++ Sbjct: 144 RHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189 >gi|330798798|ref|XP_003287437.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum] gi|325082584|gb|EGC36062.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum] Length = 238 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 47/167 (28%) Query: 30 NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA---HRKN-PMV-FINPKIITFS 84 ++ID M + M + G G+AA QIG+ +L + + H N P+ F NPK+ Sbjct: 38 SVIDRMTKEMGNV-GTGIAAPQIGINKQLFLFEFDSQGLPVHCPNFPLTAFFNPKVEIIE 96 Query: 85 DD-------FSVYQ----------------------------------EGCLSIPDYRAD 103 +D FS+ E CLS+P+ A Sbjct: 97 EDVYMPPPGFSITTNKKILNLKRYKKSLQTFERSVPLKQTSNNTMEMYESCLSVPNIFAK 156 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +KR+ + ++D + ++I A+G++A C QHE DHL G L +D L Sbjct: 157 IKRAKRCIITFLDITGKERVIDAEGIIAACFQHEYDHLLGRLLVDRL 203 >gi|241896030|ref|ZP_04783326.1| peptide deformylase [Weissella paramesenteroides ATCC 33313] gi|241870761|gb|EER74512.1| peptide deformylase [Weissella paramesenteroides ATCC 33313] Length = 195 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 34/175 (19%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 D +LR + +E ++ ++ NM+E ++ S D G+GLAA Q+G+ + Sbjct: 12 DKVLRERAAKVEFPLSDEVKEASKNMMEYLVVSQDEKENEKYGLRPGVGLAAPQVGISQQ 71 Query: 58 LVVI--------DLQDHAHRKNPMVF----INPKIITFSDDFSVYQ--EGCLSI----PD 99 I +LQD + F NP I S EGCLS+ P Sbjct: 72 FTSILIPSDDVEELQDKKTTDSDYFFKGTIYNPVITRQSVKKGALSMGEGCLSVDNDLPG 131 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 Y V RS ITV++ D N Q + +G A QHE+DHL+G L+ DH+++ + Sbjct: 132 Y---VARSYRITVKFQDENGDKQELRLEGYPAIVFQHEIDHLHGTLYYDHINKTE 183 >gi|185179123|ref|ZP_02555609.2| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024050|ref|ZP_02569693.2| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518296|ref|ZP_02556113.2| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195867564|ref|ZP_03079567.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225551606|ref|ZP_03772552.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184208960|gb|EDU06003.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019083|gb|EDU57123.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998245|gb|EDU67342.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660808|gb|EDX54062.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225379421|gb|EEH01786.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 198 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 20/167 (11%) Query: 5 PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYST--------DGIGLAA 49 P IF P PILR V++ IE +++ D + + M ++V Y GI +AA Sbjct: 18 PQWIFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAA 77 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-VKR 106 Q+G R I D A +++ + INP II S + + EGCLS+ D R+ V R Sbjct: 78 NQVGWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIR 136 Query: 107 SAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152 + + V+ D ++ I G++A C+QHE+ HL+ L+ D++++ Sbjct: 137 NKKVHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQ 183 >gi|293376283|ref|ZP_06622524.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325842152|ref|ZP_08167617.1| peptide deformylase [Turicibacter sp. HGF1] gi|292645101|gb|EFF63170.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325489718|gb|EGC92076.1| peptide deformylase [Turicibacter sp. HGF1] Length = 184 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Query: 43 DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-D 99 + +GLAA Q+ + R++ + +D + + NPKI+++S++ + EGCLS+ + Sbjct: 57 ESVGLAAPQLNLDKRIIAVHTEDEKGKLYSLALANPKIVSYSEEITYLPMGEGCLSVDRE 116 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R ITV + + ++ QHE+DHLNG LFIDH+ Sbjct: 117 VEGFVPRYRRITVEGYNLKGEKIKFRLRDYVSIVFQHEIDHLNGHLFIDHI 167 >gi|262281961|ref|ZP_06059730.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA] gi|262262415|gb|EEY81112.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA] Length = 204 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 18/143 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E + G+GLAA Q+ + R++ + L + NP V NPKI+ S Sbjct: 61 MAEKLGLRGGVGLAAPQLDISRRIIAVLLPNPEDENGNPPQDAYALKEVMYNPKIVAHSV 120 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + + + G A +QHE+D Sbjct: 121 QDAALADGEGCLSVDRDVPGY---VVRHARVTVDYFDKDGEKHRVKLKGYKAIVVQHEID 177 Query: 140 HLNGILFIDHLSRLKRDMITKKM 162 H+NGI+F D ++ I + M Sbjct: 178 HINGIMFYDRINETDPFAIKEGM 200 >gi|73662866|ref|YP_301647.1| peptide deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495381|dbj|BAE18702.1| putative N-formylmethionyl-tRNA deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 162 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + + K + ++ L+ ++ + MY + + A QIGV ++ + Sbjct: 1 MTIKQLVTSKHPILNKSIPDVTKFDENLEQLLLDLEDTMYDVEASAICAPQIGVAQKVAM 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + INP+II+ SD EG +SIP+ +V+RS I V+ D Sbjct: 61 IDME----MDGLLQLINPQIISESDTKVTDLEGSISIPNVYGEVERSKMIVVKSNDKKGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DH G LF + + + Sbjct: 117 EVEMTAYDDIARMILHMIDHFEGRLFTERVEKF 149 >gi|13358028|ref|NP_078302.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762059|ref|YP_001752550.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|23396555|sp|Q9PQ25|DEF_UREPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083081|sp|B1AJA6|DEF_UREP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|11357006|pir||F82886 polypeptide deformylase UU465 [imported] - Ureaplasma urealyticum gi|6899459|gb|AAF30877.1|AE002143_2 polypeptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827636|gb|ACA32898.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 198 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 20/167 (11%) Query: 5 PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYST--------DGIGLAA 49 P IF P PILR V++ IE +++ D + + M ++V Y GI +AA Sbjct: 18 PQWIFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAA 77 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-VKR 106 Q+G R I D A +++ + INP II S + + EGCLS+ D R+ V R Sbjct: 78 NQVGWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIR 136 Query: 107 SAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152 + + V+ D ++ I G++A C+QHE+ HL+ L+ D++++ Sbjct: 137 NKKVHVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQ 183 >gi|312870530|ref|ZP_07730648.1| peptide deformylase [Lactobacillus oris PB013-T2-3] gi|311093927|gb|EFQ52253.1| peptide deformylase [Lactobacillus oris PB013-T2-3] Length = 136 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 12/135 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 ILR+VS+P K + + + + L + +G+AA IGV R+++ L P Sbjct: 11 ILRQVSQPASKADLPVAQDLRDTL-TANADRCVGMAANMIGVTKRIIIASL-------GP 62 Query: 73 M--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + V NP+I+ S + V QEGCLS+ R+ R I VR+ + + Q + Sbjct: 63 LQVVMFNPQIVAKSGPYQV-QEGCLSLSGQRS-TTRFQKIRVRFTNEQWEQQELTFTAFP 120 Query: 131 ATCLQHELDHLNGIL 145 A +QHE DH NGIL Sbjct: 121 AEIIQHEFDHCNGIL 135 >gi|325696895|gb|EGD38782.1| peptide deformylase [Streptococcus sanguinis SK160] Length = 136 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ + P+V NP + + S + +EGCLS+ R Sbjct: 42 LGLAANMIGVRKRVIIF-----LYGLVPVVMFNPVLRSKSGPYQT-EEGCLSLTGSRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R ITV Y+D N Q Q + GL A QHELDHL GIL Sbjct: 95 QRYQEITVDYLDKNWQQQTMTLKGLPAQICQHELDHLEGIL 135 >gi|209554459|ref|YP_002284908.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541960|gb|ACI60189.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 198 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 20/167 (11%) Query: 5 PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYST--------DGIGLAA 49 P IF P PILR V++ IE +++ D + + M ++V Y GI +AA Sbjct: 18 PQWIFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAA 77 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-VKR 106 Q+G R I D A +++ + INP II S + + EGCLS+ D R+ V R Sbjct: 78 NQVGWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIR 136 Query: 107 SAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152 + + V+ D ++ I G++A C+QHE+ HL+ L+ D++++ Sbjct: 137 NKKVHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQ 183 >gi|330718596|ref|ZP_08313196.1| peptide deformylase [Leuconostoc fallax KCTC 3537] Length = 188 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 20/161 (12%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMY-STD-----------GIGLAAVQIGVLYR 57 DP+LR ++ +E ++ +I L +M++ + S D G+GLAA Q+G + Sbjct: 13 DPVLRAQAKKVEFPLSDEIQQLTQDMMDYLVISQDDEQNEKYGLRPGVGLAAPQVGYSLQ 72 Query: 58 LVVIDL----QDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSAFI 110 + I + +D NP II+ S EGCLS+ D V R+ I Sbjct: 73 MASILVPPLDEDSDEPYWQGTIFNPVIISESVKRGALNVGEGCLSVDEDVPGFVTRANRI 132 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 TVRY D Q Q I A QHE+DHL+G L+ DH++ Sbjct: 133 TVRYQDEQGQTQTIKLRDYPAIIFQHEIDHLHGHLYYDHIN 173 >gi|160913556|ref|ZP_02076247.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991] gi|158434108|gb|EDP12397.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991] Length = 185 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K ++ D ++R+ S +E +N++ L+ +ML+ + + +G+AA+ Sbjct: 6 KDIIQDSDTVIRKKSVNVELPLNAEDKQLLMDMLQYVRDSQDNELAEQNGLRPAVGIAAI 65 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRS 107 Q+G+ +++ + + D N +I++ S S + EGCLS+ +++ V R Sbjct: 66 QLGIPKKMLAVVVPDEEGNSQEFALANARIVSESVQLSYLKNGEGCLSVEKEHQGLVPRH 125 Query: 108 AFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 A ITV+ D +I I A LA LQHE+DH +G LF D +++ Sbjct: 126 ARITVKAYDLLQNKEITIKASDYLAIVLQHEIDHFSGTLFYDRINQ 171 >gi|332363261|gb|EGJ41046.1| peptide deformylase [Streptococcus sanguinis SK49] Length = 136 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 9/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 12 LQQPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVV 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP +++ S + +EGCLS+ R +R ITV Y+D + Q Q + GL A Sbjct: 67 MFNPVLLSKSGPYKT-EEGCLSLVGSRP-TQRYQEITVDYLDKHWQQQTMTLKGLPAQIC 124 Query: 135 QHELDHLNGIL 145 QHELDHL GI+ Sbjct: 125 QHELDHLEGII 135 >gi|19746868|ref|NP_608004.1| peptide deformylase [Streptococcus pyogenes MGAS8232] gi|25452912|sp|Q8NZB7|DEF_STRP8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|19749109|gb|AAL98503.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232] Length = 204 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 12/129 (9%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS- 84 M E + G+GLAA QI V R++ + + + ++ NP V NPKI++ S Sbjct: 61 MAEKLGLRAGVGLAAPQIDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSV 120 Query: 85 -DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 D EGCLS+ V R A +TV Y D Q I G A +QHE+DH+N Sbjct: 121 QDAALSDGEGCLSVDRVVEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHIN 180 Query: 143 GILFIDHLS 151 GILF D ++ Sbjct: 181 GILFYDRIN 189 >gi|307705978|ref|ZP_07642803.1| polypeptide deformylase family protein [Streptococcus mitis SK564] gi|307620488|gb|EFN99599.1| polypeptide deformylase family protein [Streptococcus mitis SK564] Length = 136 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP +++F + +EGCLS+ R Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGPYET-EEGCLSLVGVRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR I V Y D Q Q I G A QHELDHL G Sbjct: 95 KRYETIKVAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|325697445|gb|EGD39331.1| peptide deformylase [Streptococcus sanguinis SK160] gi|332359962|gb|EGJ37776.1| peptide deformylase [Streptococcus sanguinis SK1056] Length = 210 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 18/131 (13%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--D 85 E M G+GLAA Q+ + RL+ + + + NP + NPKI+ S D Sbjct: 69 EKMGLRGGVGLAAPQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQD 128 Query: 86 DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+DH+ Sbjct: 129 AALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHI 185 Query: 142 NGILFIDHLSR 152 NGI+F D ++ Sbjct: 186 NGIMFYDRINE 196 >gi|239940680|ref|ZP_04692617.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998] gi|239987159|ref|ZP_04707823.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 11379] gi|291444118|ref|ZP_06583508.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998] gi|291347065|gb|EFE73969.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998] Length = 189 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 22 EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81 E++ ++ +D + +V G+GLAA QIG+ V+ A +V +NP+I Sbjct: 40 ERVVDELFAAMDRIGQVHPFAKGMGLAAPQIGISRAAAVVQPPGDAPS---IVLLNPRIT 96 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 ++ + EGCLS D R V R ITV + + + LA + HE+DHL Sbjct: 97 VCCNESDEHYEGCLSFFDVRGPVPRPLTITVETTTQSGETVTTAYERGLARLIHHEIDHL 156 Query: 142 NGILFIDHLS 151 G+L+ ++ Sbjct: 157 GGLLYTARMN 166 >gi|332638588|ref|ZP_08417451.1| peptide deformylase [Weissella cibaria KACC 11862] Length = 195 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 DP+LR+ + + ++ ++ NM+E + + G+GLAA Q+G+ + Sbjct: 12 DPVLRQQAAKVTFPLSDEVKEATKNMMEYLVVSQNEEENEKCGLRPGVGLAAPQVGISQQ 71 Query: 58 LVVI-------DLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQ--EGCLS----IPD 99 I D D P F NP I S + EGCLS IP Sbjct: 72 FSSILIPDEDVDDTDIDEDAAPTYFFKGTIYNPVITRQSVKQTALSMGEGCLSVDEDIPG 131 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y V+R+ ITV+Y D N Q + +G A QHE+DHL+G L+ DH+S+ Sbjct: 132 Y---VERAYRITVKYQDENGDAQELKLEGYPAIVFQHEIDHLHGTLYYDHISK 181 >gi|264679313|ref|YP_003279220.1| peptide deformylase [Comamonas testosteroni CNB-2] gi|262209826|gb|ACY33924.1| peptide deformylase [Comamonas testosteroni CNB-2] Length = 173 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 11/145 (7%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R+++P+ + ++D ++L+ L M++ +G GLAA QIG ++VV + R Sbjct: 5 DPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEPNPR 64 Query: 70 --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP I ++ + EGCLS+P RA V R + VRY + Sbjct: 65 YPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPR--WNKVRYTGFDIYGDP 122 Query: 124 I--YADGLLATCLQHELDHLNGILF 146 I DG A +QHE DHL G L+ Sbjct: 123 IDRTVDGFHARVVQHECDHLWGKLY 147 >gi|52080056|ref|YP_078847.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|52003267|gb|AAU23209.1| main formylmethionine deformylase [Bacillus licheniformis ATCC 14580] Length = 184 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 9/115 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLS----I 97 G+GLAA QI + R++ + + NPKI++ S + EGCLS I Sbjct: 58 GVGLAAPQININKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPI 117 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 P Y V R I V+ ++ I G A QHE+DHLNGI+F DH+ + Sbjct: 118 PGY---VPRYERIRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDK 169 >gi|15901392|ref|NP_345996.1| peptide deformylase [Streptococcus pneumoniae TIGR4] gi|15903451|ref|NP_359001.1| peptide deformylase [Streptococcus pneumoniae R6] gi|111658457|ref|ZP_01409130.1| hypothetical protein SpneT_02000357 [Streptococcus pneumoniae TIGR4] gi|116515494|ref|YP_816841.1| peptide deformylase [Streptococcus pneumoniae D39] gi|148984899|ref|ZP_01818152.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|148997383|ref|ZP_01824988.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|168491557|ref|ZP_02715700.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|168575253|ref|ZP_02721216.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016] gi|169834412|ref|YP_001694956.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|194396850|ref|YP_002038183.1| peptide deformylase [Streptococcus pneumoniae G54] gi|221232262|ref|YP_002511415.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225854993|ref|YP_002736505.1| peptide deformylase [Streptococcus pneumoniae JJA] gi|225857177|ref|YP_002738688.1| peptide deformylase [Streptococcus pneumoniae P1031] gi|225861384|ref|YP_002742893.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298230075|ref|ZP_06963756.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255200|ref|ZP_06978786.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503289|ref|YP_003725229.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|307068194|ref|YP_003877160.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|14973038|gb|AAK75636.1| polypeptide deformylase [Streptococcus pneumoniae TIGR4] gi|15459060|gb|AAL00212.1| Formylmethionine deformylase [Streptococcus pneumoniae R6] gi|15858844|gb|AAK13237.1| peptide deformylase-like protein [Streptococcus pneumoniae] gi|116076070|gb|ABJ53790.1| polypeptide deformylase [Streptococcus pneumoniae D39] gi|147756438|gb|EDK63479.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|147922921|gb|EDK74037.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|168996914|gb|ACA37526.1| polypeptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|183574125|gb|EDT94653.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|183578738|gb|EDT99266.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016] gi|194356517|gb|ACF54965.1| peptide deformylase [Streptococcus pneumoniae G54] gi|220674723|emb|CAR69296.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225723305|gb|ACO19158.1| polypeptide deformylase [Streptococcus pneumoniae JJA] gi|225725217|gb|ACO21069.1| polypeptide deformylase [Streptococcus pneumoniae P1031] gi|225728377|gb|ACO24228.1| polypeptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298238884|gb|ADI70015.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|301800382|emb|CBW33013.1| peptide deformylase [Streptococcus pneumoniae OXC141] gi|306409731|gb|ADM85158.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|327389740|gb|EGE88085.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA04375] gi|332199596|gb|EGJ13671.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA41317] gi|332200116|gb|EGJ14189.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA47368] gi|332200992|gb|EGJ15063.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA47901] Length = 136 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP +++F + +EGCLS+ R+ Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR I + Y D Q Q I G A QHELDHL G Sbjct: 95 KRYETIRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|328957239|ref|YP_004374625.1| peptide deformylase [Carnobacterium sp. 17-4] gi|328673563|gb|AEB29609.1| peptide deformylase [Carnobacterium sp. 17-4] Length = 187 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 26/164 (15%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58 P LR V++ + I+ + L ++ML+ + ++ G+GLAA Q+ + RL Sbjct: 13 PTLRMVAKELTLPISEEEKQLGNDMLQFLKNSQDPEIAEKYNLRAGVGLAAPQLDISKRL 72 Query: 59 VVIDLQD-HAHRKNPM---VFINPKIITFSDDFS--VYQEGCLSI----PDYRADVKRSA 108 + + + P+ V +NPKII+ S + EGCLS+ P Y V R + Sbjct: 73 IAVHIPGIEEGIDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVPGY---VPRHS 129 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT+ Y D + A +QHE+DH+NGI+F DH+++ Sbjct: 130 RITLTYFDLEGELHKTRLKNYPAIVIQHEIDHINGIMFYDHINK 173 >gi|52785431|ref|YP_091260.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|319646166|ref|ZP_08000396.1| peptide deformylase [Bacillus sp. BT1B_CT2] gi|52347933|gb|AAU40567.1| YkrB [Bacillus licheniformis ATCC 14580] gi|317391916|gb|EFV72713.1| peptide deformylase [Bacillus sp. BT1B_CT2] Length = 185 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 9/115 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLS----I 97 G+GLAA QI + R++ + + NPKI++ S + EGCLS I Sbjct: 59 GVGLAAPQININKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPI 118 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 P Y V R I V+ ++ I G A QHE+DHLNGI+F DH+ + Sbjct: 119 PGY---VPRYERIRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDK 170 >gi|182684506|ref|YP_001836253.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|307127760|ref|YP_003879791.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B] gi|182629840|gb|ACB90788.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|306484822|gb|ADM91691.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B] Length = 136 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP +++F + +EGCLS+ R+ Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR I + Y D Q Q I G A QHELDHL G Sbjct: 95 KRYETIRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|223984418|ref|ZP_03634556.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM 12042] gi|223963613|gb|EEF67987.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM 12042] Length = 185 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 8/116 (6%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM----VFINPKIITFS--DDFSVYQEGCLSI 97 +G+AA+QIG+ +L+ + + + NP+ N KI++ S + + EGCLS+ Sbjct: 55 AVGIAAIQIGIPKQLLAVVVDEEDKNGNPIHYEYALANAKIVSQSVQNAYLKTGEGCLSV 114 Query: 98 -PDYRADVKRSAFITVRYMDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLS 151 D+ V RSA I V+ D ++ + A G +A LQHE+DH +GILF D ++ Sbjct: 115 LDDHPGYVIRSARIKVKGYDMLQDREVTFRASGYVAIVLQHEIDHFSGILFYDRIN 170 >gi|307704401|ref|ZP_07641314.1| polypeptide deformylase family protein [Streptococcus mitis SK597] gi|307622045|gb|EFO01069.1| polypeptide deformylase family protein [Streptococcus mitis SK597] Length = 136 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP +++F + +EGCLS+ R Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGPYET-EEGCLSLVGVRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR I V Y D Q Q I G A QHELDHL G Sbjct: 95 KRYETIRVAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|289168375|ref|YP_003446644.1| predicted polypeptide deformylase [Streptococcus mitis B6] gi|288907942|emb|CBJ22782.1| predicted polypeptide deformylase [Streptococcus mitis B6] Length = 136 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP +++F D +EGCLS+ R Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSF-DGLYETEEGCLSLTGVRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR I V Y D Q Q I G A QHELDHL G Sbjct: 95 KRYETIRVAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|227431846|ref|ZP_03913870.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352388|gb|EEJ42590.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 192 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 26/165 (15%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 DP+LR+ + + ++ + L +M+E + + G+GLAA Q+G R Sbjct: 15 DPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRPGVGLAAPQVGYSLR 74 Query: 58 LVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKR 106 + I D D + K NP II+ S EGCLS+ D V R Sbjct: 75 MSSILIPALDPEDTTDEPYFKG--TIFNPVIISESVKRGALNVGEGCLSVDEDVPGFVPR 132 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ITVRY D + Q I A QHE+DHL+G L+ DH++ Sbjct: 133 AYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177 >gi|300811934|ref|ZP_07092395.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313122848|ref|YP_004033107.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300497131|gb|EFK32192.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312279411|gb|ADQ60130.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 143 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 17/147 (11%) Query: 8 IFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGI----GLAAVQIGVLYRLV 59 I DP+ +S+P K ++ +L+D +L S DG+ GLAA IGV ++ Sbjct: 6 IIHDPL--NLSQPAAKAAANDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMIGVNKAII 63 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ P+V +NPKI+ S + + +EGCLS+P R R ITV+Y D + Sbjct: 64 AVNAG-----FLPIVMLNPKIVKRSGHY-LAEEGCLSLPGERP-ADRYEEITVKYQDMDL 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + G +A +QHE+DH G L Sbjct: 117 KEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|171920111|ref|ZP_02690482.2| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508474|ref|ZP_02689332.2| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701869|ref|ZP_02553797.2| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902473|gb|EDT48762.1| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675891|gb|EDT87796.1| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701174|gb|EDU19456.1| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 198 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 20/167 (11%) Query: 5 PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYST--------DGIGLAA 49 P IF P P+LR V++ IE +++ D + + M ++V Y GI +AA Sbjct: 18 PQWIFKDPHPVLREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAA 77 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-VKR 106 Q+G R I D A +++ + INP II S + + EGCLS+ D R+ V R Sbjct: 78 NQVGWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIR 136 Query: 107 SAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152 + + V+ D ++ I G++A C+QHE+ HL+ L+ D++++ Sbjct: 137 NKKVHVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQ 183 >gi|149038103|gb|EDL92463.1| component of oligomeric golgi complex 8 (predicted), isoform CRA_a [Rattus norvegicus] Length = 141 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 14/120 (11%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRK-----------NPM---VFINPKIITFSDDFSVY 90 +GL+A Q+GV +++V++ D R P V +NP + + Sbjct: 7 VGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTF 66 Query: 91 QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 EGC S+ + A V R + + +D + + A G A +QHE+DHL+G LFID + Sbjct: 67 PEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKM 126 >gi|309776085|ref|ZP_07671076.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] gi|308916036|gb|EFP61785.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] Length = 137 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 6/101 (5%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGVL R+++ QD N ++ +NP II + +EGCL D + V Sbjct: 42 VGMAANMIGVLKRIII--FQDGG---NYVIMLNPVIIKTGNKRYTTEEGCLC-HDTKKKV 95 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V ++D N + +I +G A +QHELDH +GIL Sbjct: 96 TRYEKIKVFFIDANGRKKIKTYEGFCAQIIQHELDHCDGIL 136 >gi|256850954|ref|ZP_05556343.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260661168|ref|ZP_05862082.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|282934131|ref|ZP_06339409.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|297205836|ref|ZP_06923231.1| peptide deformylase [Lactobacillus jensenii JV-V16] gi|256616016|gb|EEU21204.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260548105|gb|EEX24081.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|281301745|gb|EFA94011.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|297148962|gb|EFH29260.1| peptide deformylase [Lactobacillus jensenii JV-V16] Length = 184 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 27/164 (16%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 DP+LRRV+ + SD L D+M+E + ++ G+GLAA Q+G + Sbjct: 12 DPVLRRVADQLTFPLSDHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71 Query: 58 LVVIDL-QDHAHRKNPMVFINPKIITFSDDFSVYQ------EGCLSIPDYRAD--VKRSA 108 + + + D F+NPKII+ S V Q EGCLS+ D D V R Sbjct: 72 MASLLVPNDKGEIIFKETFVNPKIISES----VRQVCLSEGEGCLSV-DKVIDGYVPRPN 126 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T++Y + + + I G A HE+DHLNG LF D +++ Sbjct: 127 KLTIKYFTVDGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRINK 170 >gi|283768843|ref|ZP_06341754.1| peptide deformylase [Bulleidia extructa W1219] gi|283104629|gb|EFC06002.1| peptide deformylase [Bulleidia extructa W1219] Length = 188 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 21/163 (12%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57 +PI+R S+ ++ ++ + +L+ +ML+ V STD +G++A+Q+G+ R Sbjct: 13 NPIIRTKSKEVKLPLSEEDASLLRDMLKYVQDSTDEEKAKKYNLRPAVGISAIQVGIPKR 72 Query: 58 LVVIDLQDHAHRKNPM----VFINPKIITFSDD--FSVYQEGCLSI-PDYRADVKRSAFI 110 ++ + + D NP+ + N KI++ S + EGCLS+ D+ V R A + Sbjct: 73 MMAVVVDDIDKNGNPIHYEYMLANAKIVSESAQPAYLSSGEGCLSVVQDHPGYVIRKARV 132 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 TV D + I A G LA LQHELDH +G LF D + + Sbjct: 133 TVEAYDLITDSMVSIRARGYLAIVLQHELDHFDGHLFYDRIDK 175 >gi|30249715|ref|NP_841785.1| peptide deformylase [Nitrosomonas europaea ATCC 19718] gi|39931084|sp|Q82TW4|DEF1_NITEU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|30180752|emb|CAD85666.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718] Length = 176 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 10/160 (6%) Query: 4 KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 KP++ DP L + +R +++ + ++ L+ +M + M + +G GLAA QIGV ++V+ Sbjct: 3 KPVLKMGDPCLLQPARRVDQFGTPELEALLQDMQDTMAALNGAGLAAPQIGVSLQVVIFG 62 Query: 63 LQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + V INP + ++ EGCLSIP R V R + +RY Sbjct: 63 VEHSPRYPDAESVPFTVLINPVLTPLTEQMEEDWEGCLSIPGMRGLVPR--YTRLRYQGV 120 Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +A I G A +QHE DHLNGIL+ ++ L++ Sbjct: 121 DAAGASIDRTVTGFHARVVQHECDHLNGILYPMRINDLRK 160 >gi|91092264|ref|XP_967363.1| PREDICTED: similar to N-formylmethionylaminoacyl-tRNA deformylase, putative [Tribolium castaneum] gi|270001218|gb|EEZ97665.1| hypothetical protein TcasGA2_TC016210 [Tribolium castaneum] Length = 223 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 19/160 (11%) Query: 11 DPILRRVS----RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-D 65 DP LR VS R + K+ +I LI+ M VM + + +GL+A Q+GV +L +++ Sbjct: 40 DPTLRTVSDVIPRDLIKL-PEIKFLINRMKNVMKNHNSVGLSAPQVGVPLQLFLVECNAK 98 Query: 66 HAHRKNPM-------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 H + +P V INP+I + E C S+ + A+V R + + Sbjct: 99 HLNEYSPQEQKVKEMKVVPFKVVINPQIKITDYTKLTFVESCASVKGFHAEVPRYKSLKL 158 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D Q + G A +QHE+DHLNG ++ D + R Sbjct: 159 EAFDEENQKFEMELTGWPARIVQHEVDHLNGKIYTDIMDR 198 >gi|227893768|ref|ZP_04011573.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] gi|227864413|gb|EEJ71834.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] Length = 137 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 7/100 (7%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 GLAA IG R++ + P + INP+II S ++ + +EGCLS+ R + K Sbjct: 44 GLAANMIGKSKRIIAFYVGPF-----PFLMINPQIIKKSGEY-LAKEGCLSLDGER-EAK 96 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R ITV Y + N + + G +A +QHE+DH NGIL Sbjct: 97 RYEKITVSYQNLNFEKETQSFSGFVAETIQHEVDHCNGIL 136 >gi|323340641|ref|ZP_08080893.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] gi|323091764|gb|EFZ34384.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] Length = 198 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 18/144 (12%) Query: 23 KINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM---V 74 K+ D+M ++N + + G+GLAA Q+ R+ + + D K P V Sbjct: 46 KLAHDLMEFLENSQDEKIAKKYKLRAGVGLAAPQVDASKRITAVLVPDE-EGKPPFFKHV 104 Query: 75 FINPKIITFSDDFSVYQEG--CLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +NP I++ S + EG CLS+ P Y V R I +R+ D + + Sbjct: 105 LVNPTILSESVQMAALSEGEGCLSVDREVPGY---VPRHEKIKLRWYDLDGNEHVERLRD 161 Query: 129 LLATCLQHELDHLNGILFIDHLSR 152 A +QHE+DHLNGI+F DH+++ Sbjct: 162 YTAIVVQHEIDHLNGIMFYDHINQ 185 >gi|70726862|ref|YP_253776.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435] gi|68447586|dbj|BAE05170.1| formylmethionine deformylase [Staphylococcus haemolyticus JCSC1435] Length = 183 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99 G+GLAA QI V R++ + L D + K + +NPKI++ S + EGCLS+ + Sbjct: 58 GVGLAAPQINVSKRMIAVYLPDDGNGKAYDYMLVNPKIMSHSVQRAYLPTGEGCLSVDEN 117 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R +T++ +D + + G A QHE+DHLNG++F D++ + Sbjct: 118 IPGLVHRHFRVTIKALDIDGNEVKLRLKGYPAIIFQHEIDHLNGVMFYDYIDQ 170 >gi|315640077|ref|ZP_07895202.1| peptide deformylase [Enterococcus italicus DSM 15952] gi|315484205|gb|EFU74676.1| peptide deformylase [Enterococcus italicus DSM 15952] Length = 196 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 25/162 (15%) Query: 12 PILRRVSRPI--------EKINSDIMNLIDNM-----LEVMYSTDGIGLAAVQIGVLYRL 58 P LR +++ + +++ D+ + N E ++ G+GLAA Q+ V R+ Sbjct: 23 PTLREIAKEVTFPLTEQEQQLGKDMFEFLVNSQDPIKAEELHLRGGVGLAAPQVNVSKRM 82 Query: 59 VVI---DLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAF 109 + + Q+ + V NPKI++ S D EGCLS+ P Y V R A Sbjct: 83 IAVLVPSEQEDGEPEFAGVLYNPKIVSHSVQDACLGDGEGCLSVDRDVPGY---VVRHAR 139 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +T+ Y D I + +QHE+DHLNG+LF D ++ Sbjct: 140 VTIAYQDETGAAHKIRLKNYPSIVVQHEIDHLNGVLFYDRIN 181 >gi|325124924|gb|ADY84254.1| Polypeptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 143 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 17/147 (11%) Query: 8 IFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGI----GLAAVQIGVLYRLV 59 I DP+ +S+P K + +L+D +L S DG+ GLAA IGV ++ Sbjct: 6 IIHDPL--SLSQPAAKAAASDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMIGVNKAII 63 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ P+V +NPKI+ S + + +EGCLS+P R R ITV+Y D + Sbjct: 64 AVNA-----GFLPIVMLNPKIVKRSGHY-LAEEGCLSLPGERP-ADRYEEITVKYQDMDL 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + G +A +QHE+DH G L Sbjct: 117 EEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|325289165|ref|YP_004265346.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271] gi|324964566|gb|ADY55345.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271] Length = 136 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 12/142 (8%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQ 64 +I + LR S P ++ ++++ ++L+ + + G +GLAA IGV R++ + + Sbjct: 5 IIKDEAFLRIPSAPAA---AEDLSVVQDLLDTLSANAGCCVGLAANMIGVAKRIIAVTAE 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +V +NP+I+ S+ + +E CLS+ R +R I V+Y D Q ++ Sbjct: 62 G-----GYLVMLNPEIVKQSEPYET-EEACLSLAGTR-KARRCKNIRVQYQDTALQTRLQ 114 Query: 125 YADGLLATCLQHELDHLNGILF 146 G A +QHE+DH NGIL Sbjct: 115 NFKGFTAQIIQHEIDHCNGILI 136 >gi|325695505|gb|EGD37405.1| peptide deformylase [Streptococcus sanguinis SK150] Length = 220 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 18/131 (13%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--D 85 E M G+GLAA Q+ + R++ + + + NP + NPKI+ S D Sbjct: 79 EKMGLRGGVGLAAPQLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQD 138 Query: 86 DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 EGCLS+ P Y V R A +TV Y D + Q I G A +QHE+DH+ Sbjct: 139 AALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHI 195 Query: 142 NGILFIDHLSR 152 NGI+F D ++ Sbjct: 196 NGIMFYDRINE 206 >gi|170703079|ref|ZP_02893901.1| peptide deformylase [Burkholderia ambifaria IOP40-10] gi|171322052|ref|ZP_02910926.1| peptide deformylase [Burkholderia ambifaria MEX-5] gi|172060971|ref|YP_001808623.1| peptide deformylase [Burkholderia ambifaria MC40-6] gi|170132008|gb|EDT00514.1| peptide deformylase [Burkholderia ambifaria IOP40-10] gi|171092643|gb|EDT37944.1| peptide deformylase [Burkholderia ambifaria MEX-5] gi|171993488|gb|ACB64407.1| peptide deformylase [Burkholderia ambifaria MC40-6] Length = 177 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 6/156 (3%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L V++P+ + ++ ++ ++ +M E M+ +G GLAA QIG+ ++++ + Sbjct: 10 DPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGSNNRY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INPK+ D EGCLS+P R V R A + D Sbjct: 70 PDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGYDQFGAKIDR 129 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ ++ R T+ Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165 >gi|325685192|gb|EGD27314.1| formylmethionine deformylase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 143 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 17/146 (11%) Query: 8 IFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGI----GLAAVQIGVLYRLV 59 I DP+ +S+P K + +L+D +L S DG+ GLAA IGV ++ Sbjct: 6 IIHDPL--SLSQPAAKAAASDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMIGVNKAII 63 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ P+V +NPKI+ S + + +EGCLS+P R R ITV+Y D + Sbjct: 64 AVNA-----GFLPIVMLNPKIVKGSGHY-LAEEGCLSLPGERP-ADRYEEITVKYQDMDL 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGIL 145 + G +A +QHE+DH G L Sbjct: 117 KEHEQAFTGFVAETIQHEVDHCKGKL 142 >gi|58337138|ref|YP_193723.1| peptide deformylase [Lactobacillus acidophilus NCFM] gi|58254455|gb|AAV42692.1| polypeptide deformylase Pdf [Lactobacillus acidophilus NCFM] Length = 191 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 26/172 (15%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54 DP+LRRVS + SD L D+M+E + ++ G+GLAA Q+G Sbjct: 19 DPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVGEGVK 78 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111 + L+V D Q + K+ +F+NP+II+ S + EG CLS+ + V R +T Sbjct: 79 MAALLVPDDQGNIIFKD--IFVNPEIISESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 136 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 V Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 137 VHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINKKDPYSLKEDTV 188 >gi|56808716|ref|ZP_00366436.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes M49 591] gi|209560096|ref|YP_002286568.1| peptide deformylase [Streptococcus pyogenes NZ131] gi|238058214|sp|B5XIL1|DEF_STRPZ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|209541297|gb|ACI61873.1| Peptide deformylase [Streptococcus pyogenes NZ131] Length = 204 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 12/129 (9%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS- 84 M E + G+GLAA QI V R++ + + + ++ NP V NPKI++ S Sbjct: 61 MAEKLGLRAGVGLAAPQIDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSV 120 Query: 85 -DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 D EGCLS+ V R A +TV Y D Q I G A +QHE+DH+N Sbjct: 121 QDAALSDGEGCLSVDRVVEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHIN 180 Query: 143 GILFIDHLS 151 G+LF D ++ Sbjct: 181 GVLFYDRIN 189 >gi|15675756|ref|NP_269930.1| peptide deformylase [Streptococcus pyogenes M1 GAS] gi|21911220|ref|NP_665488.1| peptide deformylase [Streptococcus pyogenes MGAS315] gi|28896598|ref|NP_802948.1| peptide deformylase [Streptococcus pyogenes SSI-1] gi|50915023|ref|YP_060995.1| peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71904319|ref|YP_281122.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71911482|ref|YP_283032.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94989300|ref|YP_597401.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94991246|ref|YP_599346.1| peptide deformylase [Streptococcus pyogenes MGAS10270] gi|94993189|ref|YP_601288.1| peptide deformylase [Streptococcus pyogenes MGAS2096] gi|94995159|ref|YP_603257.1| peptide deformylase [Streptococcus pyogenes MGAS10750] gi|139474444|ref|YP_001129160.1| peptide deformylase [Streptococcus pyogenes str. Manfredo] gi|306826604|ref|ZP_07459909.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] gi|56748620|sp|Q5X9V1|DEF_STRP6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56749812|sp|P68772|DEF_STRP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62901513|sp|P68771|DEF_STRP1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122986892|sp|Q1J9R7|DEF_STRPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123257906|sp|Q1JEV7|DEF_STRPD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123258119|sp|Q1JJW6|DEF_STRPC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123382136|sp|Q1J4M3|DEF_STRPF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123761380|sp|Q48R93|DEF_STRPM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512785|sp|A2RGI0|DEF_STRPG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|13622977|gb|AAK34651.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS] gi|21905433|gb|AAM80291.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315] gi|28811852|dbj|BAC64781.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1] gi|50904097|gb|AAT87812.1| Peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71803414|gb|AAX72767.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71854264|gb|AAZ52287.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94542808|gb|ABF32857.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94544754|gb|ABF34802.1| Peptide deformylase [Streptococcus pyogenes MGAS10270] gi|94546697|gb|ABF36744.1| Peptide deformylase [Streptococcus pyogenes MGAS2096] gi|94548667|gb|ABF38713.1| Peptide deformylase [Streptococcus pyogenes MGAS10750] gi|134272691|emb|CAM30962.1| polypeptide deformylase [Streptococcus pyogenes str. Manfredo] gi|304431182|gb|EFM34186.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] Length = 204 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 12/129 (9%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS- 84 M E + G+GLAA QI V R++ + + + ++ NP V NPKI++ S Sbjct: 61 MAEKLGLRAGVGLAAPQIDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSV 120 Query: 85 -DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 D EGCLS+ V R A +TV Y D Q I G A +QHE+DH+N Sbjct: 121 QDAALSDGEGCLSVDRVVEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHIN 180 Query: 143 GILFIDHLS 151 G+LF D ++ Sbjct: 181 GVLFYDRIN 189 >gi|238853448|ref|ZP_04643827.1| peptide deformylase [Lactobacillus gasseri 202-4] gi|238834020|gb|EEQ26278.1| peptide deformylase [Lactobacillus gasseri 202-4] Length = 184 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 17/159 (10%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P+LR+V+RP+ + + L D M++ + ++ G+GLAA Q+G + Sbjct: 12 NPVLRQVARPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGKSIQ 71 Query: 58 LVVIDL-QDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSI-PDYRADVKRSAFITVR 113 + + + D VF+NPKII+ S + EGCLS+ D V R + + Sbjct: 72 MAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRPDKLKIH 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + + I A HE+DHLNG LF D +++ Sbjct: 132 YYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|169404549|pdb|2OS3|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E. Faecalis And S. Pyogenes Length = 205 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 12/129 (9%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS- 84 M E + G+GLAA QI V R++ + + + ++ NP V NPKI++ S Sbjct: 60 MAEKLGLRAGVGLAAPQIDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSV 119 Query: 85 -DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 D EGCLS+ V R A +TV Y D Q I G A +QHE+DH+N Sbjct: 120 QDAALSDGEGCLSVDRVVEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHIN 179 Query: 143 GILFIDHLS 151 G+LF D ++ Sbjct: 180 GVLFYDRIN 188 >gi|315038072|ref|YP_004031640.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] gi|312276205|gb|ADQ58845.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] Length = 184 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 26/172 (15%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 DP+LR+V++P+ SD L D+M+E + ++ G+GLAA Q+G + Sbjct: 12 DPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGESVQ 71 Query: 58 LVVIDLQDHAHR---KNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111 + + + D + K +++NP+II+ S + EG CLS+ + V R +T Sbjct: 72 MAALLVPDDEGKIIFKE--IYVNPEIISESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 129 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 + Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQNPYDLKEDTV 181 >gi|293402350|ref|ZP_06646487.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304197|gb|EFE45449.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 139 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 11/136 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVV-IDLQDHAHR 69 +L++ S P + + + + N+LE + + + +G+AA IGV R++ +D+ +H Sbjct: 11 LLQKTSEPATEKD---LWVAKNLLETLQAHEDRCVGMAANMIGVFKRIIAFVDIDTGSH- 66 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 V +NP+II S + + QE CLSI R +R I VRY D + +I Sbjct: 67 ---WVMLNPEIIKTSKETYLAQEQCLSISGIR-QTRRYRRIKVRYQDEHMNIKIKTFHDK 122 Query: 130 LATCLQHELDHLNGIL 145 A +QHE+DH NGIL Sbjct: 123 TAQIIQHEIDHCNGIL 138 >gi|116492920|ref|YP_804655.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745] gi|122265616|sp|Q03F09|DEF_PEDPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116103070|gb|ABJ68213.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745] Length = 184 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 33/167 (19%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P+LR+ + + ++ + + D M+E + ++ G+GLAA QIG+ + Sbjct: 12 NPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPAIAEKYHLRAGVGLAAPQIGLSIQ 71 Query: 58 LV---------VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVK 105 + IDL++ +NP I++ S + +EG CLS+ D V Sbjct: 72 MASVLVPGPDNTIDLEE--------TLVNPVIVSQSVQIAALEEGEGCLSVDKDVPGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R ITVRY + + + I A QHE+DHL G LF DH+++ Sbjct: 124 RHDRITVRYQTLDGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINK 170 >gi|227903714|ref|ZP_04021519.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796] gi|227868601|gb|EEJ76022.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796] Length = 184 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 26/172 (15%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54 DP+LRRVS + SD L D+M+E + ++ G+GLAA Q+G Sbjct: 12 DPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVGEGVK 71 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111 + L+V D Q + K+ +F+NP+II+ S + EG CLS+ + V R +T Sbjct: 72 MAALLVPDDQGNIIFKD--IFVNPEIISESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 129 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 V Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 130 VHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINKKDPYSLKEDTV 181 >gi|229918497|ref|YP_002887143.1| peptide deformylase [Exiguobacterium sp. AT1b] gi|229469926|gb|ACQ71698.1| peptide deformylase [Exiguobacterium sp. AT1b] Length = 179 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 4/111 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPDY- 100 G+G+AA Q+GV R + LQ+ +F NPKI + S F EGCLS+ Sbjct: 58 GVGIAAPQLGVNRRFFTVLLQEEEETFKLSIF-NPKITSHSVEQTFLNGGEGCLSVDRVV 116 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +V R IT+ D + + + G+ A QHELDHL+GI+F D ++ Sbjct: 117 KGNVPRFRRITLEGFDRDGKPIKLRLRGMRAVVCQHELDHLDGIMFYDRIN 167 >gi|295103440|emb|CBL00984.1| N-formylmethionyl-tRNA deformylase [Faecalibacterium prausnitzii SL3/3] Length = 136 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 13/141 (9%) Query: 8 IFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYS-TDG-IGLAAVQIGVLYRLVVIDLQ 64 I DP+ L + S P ++ + ++LE + + DG +G+AA IGVL R++ ++ + Sbjct: 5 IMHDPLFLAQKSAPATPEDAPVAR---DLLETLTAHADGCVGMAANMIGVLKRIIAVEAE 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D +V NP I+ S + +EGCLS+ R KR I V+Y + + +I Sbjct: 62 D-----GYLVLFNPVILKKSGQYEA-EEGCLSLEGVR-KTKRWQSIKVQYQTMDGKPRIK 114 Query: 125 YADGLLATCLQHELDHLNGIL 145 G A +QHE+DH +GIL Sbjct: 115 TFTGWTAQIIQHEIDHCDGIL 135 >gi|322411042|gb|EFY01950.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 204 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 16/122 (13%) Query: 44 GIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITFS--DDFSVY 90 G+GLAA QI V R++ + +L D NP V NPKI++ S D Sbjct: 70 GVGLAAPQIDVSKRIIAVLVPNLPDQ--EGNPPKEAYSLQEVLYNPKIVSHSVQDAALAD 127 Query: 91 QEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 EGCLS+ V R A +TV Y D + I G A +QHE+DH+NG++F D Sbjct: 128 GEGCLSVDRVVEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDR 187 Query: 150 LS 151 ++ Sbjct: 188 IN 189 >gi|116494793|ref|YP_806527.1| peptide deformylase [Lactobacillus casei ATCC 334] gi|191638306|ref|YP_001987472.1| peptide deformylase [Lactobacillus casei BL23] gi|239631609|ref|ZP_04674640.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066358|ref|YP_003788381.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang] gi|122263789|sp|Q039N7|DEF_LACC3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238693032|sp|B3WE13|DEF_LACCB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116104943|gb|ABJ70085.1| peptide deformylase [Lactobacillus casei ATCC 334] gi|190712608|emb|CAQ66614.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus casei BL23] gi|239526074|gb|EEQ65075.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438765|gb|ADK18531.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang] gi|327382333|gb|AEA53809.1| Peptide deformylase [Lactobacillus casei LC2W] gi|327385534|gb|AEA57008.1| Peptide deformylase [Lactobacillus casei BD-II] Length = 184 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 17/157 (10%) Query: 13 ILRRVSRPI--------EKINSDIMNLI-----DNMLEVMYSTDGIGLAAVQIGVLYRLV 59 +LR ++P+ +++ D+M + + E + G+GLAA Q+G + Sbjct: 14 VLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAPQVGQSKAMA 73 Query: 60 VIDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVRYM 115 + + D V INP+II+ S + EG CLS+ D V R+ IT+ Y Sbjct: 74 AVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVRADRITISYQ 133 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +H+ I A QHE+DHLNG+LF DH+++ Sbjct: 134 NEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINK 170 >gi|293365121|ref|ZP_06611838.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|291316571|gb|EFE57007.1| peptide deformylase [Streptococcus oralis ATCC 35037] Length = 208 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 17/132 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNPM-------VFINPKIITFS-D 85 M E M G+GLAA Q+ + R++ + + + + P V NPKI++ S Sbjct: 66 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQ 125 Query: 86 DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+DH Sbjct: 126 DAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 182 Query: 141 LNGILFIDHLSR 152 LNGI+F D ++ Sbjct: 183 LNGIMFYDRINE 194 >gi|251781679|ref|YP_002995981.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390308|dbj|BAH80767.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 204 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 16/122 (13%) Query: 44 GIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITFS--DDFSVY 90 G+GLAA QI V R++ + +L D NP V NPKI++ S D Sbjct: 70 GVGLAAPQIDVSKRIIAVLVPNLPDQ--EGNPPKEAYSLQEVLYNPKIVSHSVQDAALAD 127 Query: 91 QEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 EGCLS+ V R A +TV Y D + I G A +QHE+DH+NG++F D Sbjct: 128 GEGCLSVDRVVEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDR 187 Query: 150 LS 151 ++ Sbjct: 188 IN 189 >gi|227535207|ref|ZP_03965256.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187091|gb|EEI67158.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 181 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 17/157 (10%) Query: 13 ILRRVSRPI--------EKINSDIMNLI-----DNMLEVMYSTDGIGLAAVQIGVLYRLV 59 +LR ++P+ +++ D+M + + E + G+GLAA Q+G + Sbjct: 11 VLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAPQVGQSKAMA 70 Query: 60 VIDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVRYM 115 + + D V INP+II+ S + EG CLS+ D V R+ IT+ Y Sbjct: 71 AVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVRADRITISYQ 130 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +H+ I A QHE+DHLNG+LF DH+++ Sbjct: 131 NEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINK 167 >gi|329115956|ref|ZP_08244673.1| peptide deformylase [Streptococcus parauberis NCFD 2020] gi|326906361|gb|EGE53275.1| peptide deformylase [Streptococcus parauberis NCFD 2020] Length = 204 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 16/131 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITF 83 M E + G+GLAA Q+ V R++ + +++D NP V NPKI++ Sbjct: 61 MAEKLGLRGGVGLAAPQLDVSKRIIAVLVPNMEDA--EGNPPKEAFSIKEVMYNPKIVSH 118 Query: 84 S--DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 S D EGCLS+ V R A +TV Y D + I G A +QHE+DH Sbjct: 119 SVQDAALADGEGCLSVDRLIEGYVVRHARVTVEYFDKEGEKHRIKLKGYNAIVVQHEIDH 178 Query: 141 LNGILFIDHLS 151 +NGI+F D ++ Sbjct: 179 INGIMFYDRIN 189 >gi|323126471|gb|ADX23768.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 204 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 16/122 (13%) Query: 44 GIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITFS--DDFSVY 90 G+GLAA QI V R++ + +L D NP V NPKI++ S D Sbjct: 70 GVGLAAPQIDVSKRIIAVLVPNLPDQ--EGNPPKEAYSLQEVLYNPKIVSHSVQDAALAD 127 Query: 91 QEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 EGCLS+ V R A +TV Y D + I G A +QHE+DH+NG++F D Sbjct: 128 GEGCLSVDRVVEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDR 187 Query: 150 LS 151 ++ Sbjct: 188 IN 189 >gi|199598173|ref|ZP_03211595.1| peptide deformylase [Lactobacillus rhamnosus HN001] gi|229552108|ref|ZP_04440833.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1] gi|258508310|ref|YP_003171061.1| peptide deformylase [Lactobacillus rhamnosus GG] gi|258539523|ref|YP_003174022.1| peptide deformylase [Lactobacillus rhamnosus Lc 705] gi|199590934|gb|EDY99018.1| peptide deformylase [Lactobacillus rhamnosus HN001] gi|229314541|gb|EEN80514.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1] gi|257148237|emb|CAR87210.1| Peptide deformylase [Lactobacillus rhamnosus GG] gi|257151199|emb|CAR90171.1| Peptide deformylase [Lactobacillus rhamnosus Lc 705] gi|259649627|dbj|BAI41789.1| peptide deformylase [Lactobacillus rhamnosus GG] gi|328462751|gb|EGF34641.1| peptide deformylase [Lactobacillus rhamnosus MTCC 5462] Length = 184 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 8/115 (6%) Query: 44 GIGLAAVQIG---VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI- 97 G+GLAA Q+G + ++V D K V INP+II+ S + EG CLS+ Sbjct: 58 GVGLAAPQVGQSKAMAAVLVPGDNDEILFKE--VLINPRIISNSVQHAALAEGEGCLSVD 115 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D V R+ IT+ Y + +H+ + A QHE+DHLNG+LF DH+++ Sbjct: 116 KDVPGYVVRADRITIAYQNEAGEHKKVRLKNYPAIVCQHEIDHLNGVLFYDHINK 170 >gi|163840759|ref|YP_001625164.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] gi|162954235|gb|ABY23750.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] Length = 213 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 12/149 (8%) Query: 12 PILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61 P LR ++P S++ ++ M M++ G GLAA Q+GV +L V+ Sbjct: 34 PTLRAPAQPWNGQLGASELEQFVELMRRCMHAAPGFGLAAPQLGVSLQLAVLEDGHQVDS 93 Query: 62 DLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ R N F +NP+ + + EGCLS+ ++A V R I + Y + Sbjct: 94 EIASIRERSNLPFFAMLNPRYQPLNSILVGFYEGCLSMSGWQAVVYRHHAIQLTYTTVDG 153 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + G A +QHE DHL G+L++D Sbjct: 154 ELVQRELAGWPARIVQHETDHLAGMLYLD 182 >gi|307702174|ref|ZP_07639134.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|307624187|gb|EFO03164.1| peptide deformylase [Streptococcus oralis ATCC 35037] Length = 203 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 17/132 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNPM-------VFINPKIITFS-D 85 M E M G+GLAA Q+ + R++ + + + + P V NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQ 120 Query: 86 DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+DH Sbjct: 121 DAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 177 Query: 141 LNGILFIDHLSR 152 LNGI+F D ++ Sbjct: 178 LNGIMFYDRINE 189 >gi|299533459|ref|ZP_07046840.1| peptide deformylase [Comamonas testosteroni S44] gi|298718565|gb|EFI59541.1| peptide deformylase [Comamonas testosteroni S44] Length = 171 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 21/150 (14%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R+++P+ + ++D ++L+ L M++ +G GLAA QIG ++VV + R Sbjct: 3 DPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEPNPR 62 Query: 70 --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP I ++ + EGCLS+P RA V R + VRY + Sbjct: 63 YPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPR--WNKVRYTGFD----- 115 Query: 124 IYAD-------GLLATCLQHELDHLNGILF 146 IY D G A +QHE DHL G L+ Sbjct: 116 IYGDPIDRTVEGFHARVVQHECDHLWGKLY 145 >gi|315612890|ref|ZP_07887801.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] gi|315315000|gb|EFU63041.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] Length = 208 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 17/132 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNPM-------VFINPKIITFS-D 85 M E M G+GLAA Q+ + R++ + + + + P V NPKI++ S Sbjct: 66 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQ 125 Query: 86 DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+DH Sbjct: 126 DAALGEGEGCLSVDRNVPGY---VIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 182 Query: 141 LNGILFIDHLSR 152 LNGI+F D ++ Sbjct: 183 LNGIMFYDRINE 194 >gi|58336410|ref|YP_192995.1| peptide deformylase [Lactobacillus acidophilus NCFM] gi|58253727|gb|AAV41964.1| polypeptide deformylase [Lactobacillus acidophilus NCFM] Length = 137 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 7/98 (7%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 GLAA IG R++ + PMV NPKII +++ + EGCLS+ R VK Sbjct: 44 GLAANMIGEAKRIIAFYIVGM-----PMVMFNPKIIQKGNEY-LATEGCLSLNGERP-VK 96 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 R ITV+Y + N +++ G +A +QHE+DH +G Sbjct: 97 RYEHITVKYQNINLEYETQEFSGFVAETIQHEIDHCDG 134 >gi|291531177|emb|CBK96762.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum 70/3] Length = 136 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGVL ++ I+ + ++ NP+II SD +EGCLS+ R Sbjct: 42 VGMAANMIGVLKNIIAIN-----DNGDYLLMYNPEIIK-SDGAYETEEGCLSLDGVRK-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR I VRY+D N + +I +G A +QHE+DHL+GI+ Sbjct: 95 KRYKKIKVRYLDRNFKIKIKTYEGFTAQIIQHEVDHLSGII 135 >gi|15858848|gb|AAK13239.1| peptide deformylase-like protein DefA [Streptococcus pneumoniae] Length = 136 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP +++F + +EGCLS+ R+ Sbjct: 42 VGLAANIIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR I + Y D Q Q I G A QHELDHL G Sbjct: 95 KRYETIRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|114330947|ref|YP_747169.1| peptide deformylase [Nitrosomonas eutropha C91] gi|114307961|gb|ABI59204.1| peptide deformylase [Nitrosomonas eutropha C91] Length = 176 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 8/159 (5%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 KP++ DP L + ++ IE+ ++ ++ L+ +M + M + +G GLAA QIG+ ++V+ Sbjct: 3 KPVLKMGDPRLLQPAQRIEQFDTPVLKELLQDMQDTMAALNGAGLAAPQIGISLQVVIFG 62 Query: 63 LQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++ H+ R + V INP + +++ EGCLSIP R V R + + +D Sbjct: 63 IE-HSPRYPDVESVPFTVLINPILTPLTEEQEEDWEGCLSIPGMRGLVPRYTHLRYQGVD 121 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G A +QHE DHLNGIL+ ++ L++ Sbjct: 122 ETATPIDRTVAGFHARVVQHECDHLNGILYPMRINDLRK 160 >gi|327183352|gb|AEA31799.1| peptide deformylase [Lactobacillus amylovorus GRL 1118] Length = 184 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 22/170 (12%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 DP+LR+V++P+ SD L D+M+E + ++ G+GLAA Q+G + Sbjct: 12 DPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGESVQ 71 Query: 58 LVVIDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFITVR 113 + + + D +++NP+II+ S + EG CLS+ + V R +T+ Sbjct: 72 MAALLVPNDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDEVINGYVPRPDKLTIH 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 132 YYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQNPYALKEDTV 181 >gi|259503598|ref|ZP_05746500.1| peptide deformylase [Lactobacillus antri DSM 16041] gi|259168422|gb|EEW52917.1| peptide deformylase [Lactobacillus antri DSM 16041] Length = 136 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R+++ L P+V NP II S + QEGCLS+ R+ Sbjct: 42 VGMAANMIGVPKRVIIASLGPF-----PVVMFNPVIIAKSGPYQT-QEGCLSLAGQRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R ITVR+ + Q + D A +QHE+DH NGIL Sbjct: 95 TRFQKITVRFTNEQWTQQELSLDAFPAEIVQHEIDHCNGIL 135 >gi|134296033|ref|YP_001119768.1| peptide deformylase [Burkholderia vietnamiensis G4] gi|134139190|gb|ABO54933.1| peptide deformylase [Burkholderia vietnamiensis G4] Length = 177 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L ++ P+ + ++ ++ ++ +M E M+ +G GLAA QIG+ ++++ ++ Sbjct: 10 DPRLLEIAEPVGQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGNNNRY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INPK+ D EGCLS+P R V R A VRY+ + I Sbjct: 70 PDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYA--KVRYVGYDQFGAKI 127 Query: 125 --YADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 A+G A +QHE DHL G L+ ++ R T Sbjct: 128 DRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFT 164 >gi|328945770|gb|EGG39921.1| peptide deformylase [Streptococcus sanguinis SK1087] Length = 136 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 9/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + +P E+ + + + L ++ + + + + +GLAA IGV R+++ + P+V Sbjct: 12 LQQPSEQASREDLYLAQDLQDTLQTNRENCLGLAANMIGVRKRVIIF-----LYGLVPVV 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP + S + +EGCLS+ R +R ITV Y+D N Q Q + GL A Sbjct: 67 MFNPVLRYKSGPYQT-EEGCLSLTGSRL-TQRYQEITVDYLDKNWQQQTMTLKGLPAQIC 124 Query: 135 QHELDHLNGIL 145 QHELDHL GI+ Sbjct: 125 QHELDHLEGII 135 >gi|154500866|ref|ZP_02038904.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC 29799] gi|150270366|gb|EDM97692.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC 29799] Length = 136 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 9/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVM-YSTDG-IGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 +++ E D + + ++LE + + DG +G+AA IGV R++ D + MV Sbjct: 12 LAQKAEPATPDDIQIAADLLETLEHHKDGCVGMAANMIGVNKRIIAFD-----NEGTYMV 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP+I+ S + +EGCLS+ R KR I VR+ + + Q ++ G A + Sbjct: 67 MFNPEIVKKSGPYDA-EEGCLSLTGIRP-AKRWQSIKVRWQNEHFQERLKAFTGWTAQII 124 Query: 135 QHELDHLNGIL 145 QHELDH GI+ Sbjct: 125 QHELDHCEGII 135 >gi|322374579|ref|ZP_08049093.1| peptide deformylase [Streptococcus sp. C300] gi|321280079|gb|EFX57118.1| peptide deformylase [Streptococcus sp. C300] Length = 203 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 17/132 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNPM-------VFINPKIITFS-D 85 M E M G+GLAA Q+ + R++ + + + + P V NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRVIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQ 120 Query: 86 DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+DH Sbjct: 121 DAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 177 Query: 141 LNGILFIDHLSR 152 LNGI+F D ++ Sbjct: 178 LNGIMFYDRINE 189 >gi|325693656|gb|EGD35575.1| peptide deformylase [Streptococcus sanguinis SK150] gi|327458954|gb|EGF05302.1| peptide deformylase [Streptococcus sanguinis SK1057] gi|332360611|gb|EGJ38421.1| peptide deformylase [Streptococcus sanguinis SK1056] Length = 136 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 12/139 (8%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + F + R SR + D+ + + E + IGLAA IGV R+++ Sbjct: 9 IFFLQQLSERASREDLYLAQDLQDTLQANRE-----NCIGLAANMIGVRKRVIIF----- 58 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + P+V NP +++ S + +EGCLS+ R +R ITV Y+D + Q Q + Sbjct: 59 LYGLVPVVMFNPVLLSKSGPYKT-EEGCLSLVGSRP-TQRYQEITVDYLDKHWQQQTMTL 116 Query: 127 DGLLATCLQHELDHLNGIL 145 GL A QHELDHL GI+ Sbjct: 117 KGLPAQICQHELDHLEGII 135 >gi|116513303|ref|YP_812209.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092618|gb|ABJ57771.1| N-formylmethionyl-tRNA deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 143 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 17/147 (11%) Query: 8 IFPDPILRRVSRPIEKIN-SD---IMNLIDNMLEVMYSTDGI----GLAAVQIGVLYRLV 59 I DP+ +S+P K SD +L+D +L S DG+ GLAA IGV ++ Sbjct: 6 IIHDPL--SLSQPAAKAAVSDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMIGVNKAII 63 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ P+V +NPKI+ S + + +EGCLS+P R R ITV+Y D + Sbjct: 64 AVNA-----GFLPIVMLNPKIVKRSGHY-LAEEGCLSLPGERP-ADRYEEITVKYQDMDL 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + G +A +QHE+DH G L Sbjct: 117 EEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|331083358|ref|ZP_08332471.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|330404439|gb|EGG83984.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 136 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++++++ +V NP ++ + +EGCLS+P R Sbjct: 42 VGMAANMIGVKKRVIIVNMGFV-----DVVMFNPVLVKKELPYET-EEGCLSLPGVRK-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y+D N + Q + DG +A QHELDHL GIL Sbjct: 95 TRYQTIEVEYLDMNWKKQNLKLDGWIAQICQHELDHLEGIL 135 >gi|307706823|ref|ZP_07643628.1| peptide deformylase [Streptococcus mitis SK321] gi|307617908|gb|EFN97070.1| peptide deformylase [Streptococcus mitis SK321] Length = 203 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPEEAYDLQAIMY-NPKIVSHSV 119 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 177 HINGIMFYDRINE 189 >gi|296111965|ref|YP_003622347.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154] gi|295833497|gb|ADG41378.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154] Length = 192 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 22/162 (13%) Query: 11 DPILRRVSRPIE--------KINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYR 57 DP+LR++++P+ ++ D+M + D Y G+GLAA Q+G + Sbjct: 15 DPVLRQIAQPVPFPLSEEHAQLAKDMMTYLVISQDATQNETYGLRPGVGLAAPQVGYSLQ 74 Query: 58 LVVI---DLQDHAHRKNPM---VFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSA 108 + + L H P NP II+ S EGCLS+ D V R+ Sbjct: 75 MAAVLVPSLDPHESDDTPYFKGTIFNPTIISESVKRGALDVGEGCLSVDEDVPGFVPRAN 134 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +TVRY D +II A QHE+DHL+G L+ DH+ Sbjct: 135 RVTVRYQDEIGDTKIIKLRDYPAIVFQHEIDHLHGHLYYDHI 176 >gi|207110973|ref|ZP_03245135.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1] Length = 72 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 76 INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ A LLA +Q Sbjct: 5 INPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQ 63 Query: 136 HELDHLNGI 144 HE+DHLNG+ Sbjct: 64 HEIDHLNGV 72 >gi|116618440|ref|YP_818811.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097287|gb|ABJ62438.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 192 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 26/165 (15%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 DP+LR+ + + ++ + L +M+E + + G+GLAA Q+G R Sbjct: 15 DPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRPGVGLAAPQVGYSLR 74 Query: 58 LVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKR 106 + I D D + K NP II+ S EGCLS+ D V R Sbjct: 75 MSSILIPALDPEDTIDEPYFKG--TIFNPVIISESVKRGALNVGEGCLSVDEDVPGFVPR 132 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ITVRY D + Q I A QHE+DHL+G L+ DH++ Sbjct: 133 AYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177 >gi|319946366|ref|ZP_08020604.1| peptide deformylase [Streptococcus australis ATCC 700641] gi|319747519|gb|EFV99774.1| peptide deformylase [Streptococcus australis ATCC 700641] Length = 148 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R+++I P+V NP ++ + +EGCLS+ R Sbjct: 54 VGMAANMIGVRKRVIIIQFG-----LMPLVLFNPVLVKKEGVYET-EEGCLSLAGSR-KT 106 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y D N + Q+I +G A QHELDHL GIL Sbjct: 107 SRFEKIQVSYRDMNWKPQLISLEGFAAQICQHELDHLEGIL 147 >gi|228474307|ref|ZP_04059042.1| peptide deformylase [Staphylococcus hominis SK119] gi|314936719|ref|ZP_07844066.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] gi|228271666|gb|EEK13013.1| peptide deformylase [Staphylococcus hominis SK119] gi|313655338|gb|EFS19083.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] Length = 183 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99 G+GLAA QI + +++ + L D K+ + +NPK+I+ S + EGCLS+ + Sbjct: 58 GVGLAAPQINISKKMIAVYLPDDGEGKSYDYMLVNPKVISHSVQHAYLPTGEGCLSVDEN 117 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R T++ D + + G A QHE+DHLNGI+F D++ + Sbjct: 118 IPGLVHRHYRTTIKAYDIDGNEVKLRLKGYPAIVFQHEIDHLNGIMFYDYIDK 170 >gi|254252055|ref|ZP_04945373.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] gi|124894664|gb|EAY68544.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] Length = 177 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 10/158 (6%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L V+ P+ + ++ ++ ++ +M + M+ +G GLAA QIG+ ++++ + Sbjct: 10 DPRLLEVAEPVRQFDTPELHEIVADMFDTMHHANGAGLAAPQIGIGLQIIIFGFGSNNRY 69 Query: 70 KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + V INPKI D EGCLS+P R V R A VRY+ + I Sbjct: 70 PDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYA--KVRYVGFDQFGAKI 127 Query: 125 --YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL G L+ ++ R T+ Sbjct: 128 DRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165 >gi|270293023|ref|ZP_06199234.1| peptide deformylase [Streptococcus sp. M143] gi|270279002|gb|EFA24848.1| peptide deformylase [Streptococcus sp. M143] Length = 203 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMY-NPKIVSHSV 119 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEGCLSVDRVVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 HLNGI+F D ++ Sbjct: 177 HLNGIMFYDRINE 189 >gi|225859308|ref|YP_002740818.1| peptide deformylase [Streptococcus pneumoniae 70585] gi|303255336|ref|ZP_07341406.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|303260177|ref|ZP_07346149.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|303262567|ref|ZP_07348508.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|303264969|ref|ZP_07350884.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|303266432|ref|ZP_07352320.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|303269392|ref|ZP_07355162.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|225720965|gb|ACO16819.1| polypeptide deformylase [Streptococcus pneumoniae 70585] gi|301794560|emb|CBW37004.1| peptide deformylase [Streptococcus pneumoniae INV104] gi|301802269|emb|CBW35021.1| peptide deformylase [Streptococcus pneumoniae INV200] gi|302597704|gb|EFL64780.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|302636284|gb|EFL66778.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|302638674|gb|EFL69137.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|302641060|gb|EFL71437.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|302644010|gb|EFL74269.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|302645488|gb|EFL75720.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|332073889|gb|EGI84367.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA41301] Length = 136 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IG+ R+++ +L P+V NP +++F + +EGCLS+ R+ Sbjct: 42 VGLAANMIGMQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR I + Y D Q Q I G A QHELDHL G Sbjct: 95 KRYETIRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|325956526|ref|YP_004291938.1| peptide deformylase [Lactobacillus acidophilus 30SC] gi|325333091|gb|ADZ06999.1| peptide deformylase [Lactobacillus acidophilus 30SC] Length = 184 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 26/172 (15%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 DP+LR+V++P+ SD L D+M+E + ++ G+GLAA Q+G + Sbjct: 12 DPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGESVQ 71 Query: 58 LVVIDLQDHAHR---KNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111 + + + D + K +++NP+II+ S + EG CLS+ V R +T Sbjct: 72 MAALLVPDDEGKIIFKE--IYVNPEIISESVRQACLSEGEGCLSVDKVINGYVPRPDKLT 129 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 + Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQNPYALKEDTV 181 >gi|331266683|ref|YP_004326313.1| peptide deformylase [Streptococcus oralis Uo5] gi|326683355|emb|CBZ00973.1| peptide deformylase [Streptococcus oralis Uo5] Length = 203 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRVIAVLVPNIVEEGETPQEAYDLQAIMY-NPKIVSHSV 119 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 HLNGI+F D ++ Sbjct: 177 HLNGIMFYDRINE 189 >gi|193216926|ref|YP_002000168.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1] gi|193002249|gb|ACF07464.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1] Length = 185 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 23/167 (13%) Query: 6 LVIFPDPILRRVSR----PIEKINSD-----IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 L+ P+ LR+ S P+ K + D I ++ D+ + +G+AAVQ G+L Sbjct: 9 LIELPNKTLRQKSNDITLPLTKEDEDLIQKMIFHVDDSQEKETKFRPAVGVAAVQYGILK 68 Query: 57 RLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSI----PDYRADVKR 106 + I L+D N ++F INP+++ S+ EG CLS+ P V R Sbjct: 69 NVFYILLKD---ENNEVLFKDALINPQMVAHSEHKLALDEGEGCLSVNQNDPGQAGYVPR 125 Query: 107 SAFITVRYMDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSR 152 A + ++ + + Y G LA QHE DHL G LFIDHL++ Sbjct: 126 YARVVMKAYSYYEKKEKTYDVSGYLAIIFQHEYDHLFGKLFIDHLNK 172 >gi|227524969|ref|ZP_03955018.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] gi|227087881|gb|EEI23193.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] Length = 136 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 11/119 (9%) Query: 31 LIDNMLEVMYSTDGI--GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88 +I ++L+ +++ I G+AA IGV R++V+ + R P+ +NP+I+ S F+ Sbjct: 26 IITDLLDTLHANTQICVGMAANMIGVNKRIIVVQM-----RMLPVALVNPEIVEKSVPFA 80 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQHQIIYADGLLATCLQHELDHLNGILF 146 +EGCLS+ R+ R ITV Y+D N H+ ++D +A +QHE+DH GIL Sbjct: 81 T-KEGCLSLEGQRS-TTRYKEITVTYLDQNFRSHRQGFSD-WIAQIIQHEVDHCEGILI 136 >gi|306825519|ref|ZP_07458859.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432457|gb|EFM35433.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 208 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 30/169 (17%) Query: 11 DPILRRVSRPIEKINSD--------IMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57 +P LR V+ + SD +M + N M E M G+GLAA Q+ + R Sbjct: 29 NPTLRAVAEEVTFPLSDQEIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQLDISKR 88 Query: 58 LVVIDLQDHAHR-KNPM-------VFINPKIITFS-DDFSVYQ-EGCLSI----PDYRAD 103 ++ + + + + P V NPKI++ S D ++ + EGCLS+ P Y Sbjct: 89 IIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRVVPGY--- 145 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 146 VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 194 >gi|238855249|ref|ZP_04645568.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|260664609|ref|ZP_05865461.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|282932458|ref|ZP_06337883.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|313471931|ref|ZP_07812423.1| peptide deformylase [Lactobacillus jensenii 1153] gi|238832141|gb|EEQ24459.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|239529143|gb|EEQ68144.1| peptide deformylase [Lactobacillus jensenii 1153] gi|260561674|gb|EEX27646.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|281303407|gb|EFA95584.1| peptide deformylase [Lactobacillus jensenii 208-1] Length = 184 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 27/164 (16%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 DP+LRRV+ + ++ L D+M+E + ++ G+GLAA Q+G + Sbjct: 12 DPVLRRVADQLTFPLSEHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71 Query: 58 LVVIDL-QDHAHRKNPMVFINPKIITFSDDFSVYQ------EGCLSIPDYRAD--VKRSA 108 + + + D F+NPKI++ S V Q EGCLS+ D D V R Sbjct: 72 MASLLVPNDKGEIIFKETFVNPKIVSES----VRQVCLSEGEGCLSV-DKVIDGYVPRPN 126 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T++Y + + I G A HE+DHLNG LF D + + Sbjct: 127 KLTIKYFTVEGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|148988601|ref|ZP_01820034.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|148990374|ref|ZP_01821546.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|149021827|ref|ZP_01835834.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|168493454|ref|ZP_02717597.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06] gi|147924329|gb|EDK75421.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|147925802|gb|EDK76877.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|147930063|gb|EDK81050.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|183576408|gb|EDT96936.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06] Length = 136 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP +++F + +EGCLS+ R+ Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR + Y D Q Q I G A QHELDHL G Sbjct: 95 KRYETTRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|81429108|ref|YP_396108.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K] gi|78610750|emb|CAI55801.1| Formylmethionine deformylase (formyl-L-methionyl peptideamidohydrolase) [Lactobacillus sakei subsp. sakei 23K] Length = 136 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSD-IMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L +V+ P ++ I +LID + +TD +G+AA IGV R++++ + Sbjct: 12 LSQVALPATTADTAVITDLIDTL---QANTDRCVGMAANMIGVNKRIIIVQM-----GIL 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P++ +NPKII S+ + +EGCLS+ R+ KR I V Y D + Q G +A Sbjct: 64 PVIMVNPKIIRHSNPYQT-EEGCLSLVGQRS-TKRYETIEVSYQDRQFKAQQQAFSGWVA 121 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH GIL Sbjct: 122 QIIQHEIDHCEGILI 136 >gi|163784804|ref|ZP_02179594.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1] gi|159879931|gb|EDP73645.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1] Length = 108 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 7/109 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M K ++ +PD L+ VS+ + + ++ + MY S G+G+AA Q+ R + Sbjct: 1 MKKLKILTYPDERLKVVSKEVIDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNKHIRTI 60 Query: 60 VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 ++D + H+KN MV NPKII + + + +E C+S+PDY + Sbjct: 61 IVDASHYKHKKNKLNHGLMVLSNPKIIAYDGEI-IIRERCMSVPDYTGN 108 >gi|116629817|ref|YP_814989.1| peptide deformylase [Lactobacillus gasseri ATCC 33323] gi|282851676|ref|ZP_06261041.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311110541|ref|ZP_07711938.1| peptide deformylase [Lactobacillus gasseri MV-22] gi|122273245|sp|Q042S1|DEF_LACGA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116095399|gb|ABJ60551.1| peptide deformylase [Lactobacillus gasseri ATCC 33323] gi|282557644|gb|EFB63241.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311065695|gb|EFQ46035.1| peptide deformylase [Lactobacillus gasseri MV-22] Length = 184 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 17/159 (10%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P+LR+V++P+ + + L D M++ + ++ G+GLAA Q+G + Sbjct: 12 NPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGKSIQ 71 Query: 58 LVVIDL-QDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSI-PDYRADVKRSAFITVR 113 + + + D VF+NPKII+ S + EGCLS+ D V R + + Sbjct: 72 MAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRPDKLKIH 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + + I A HE+DHLNG LF D +++ Sbjct: 132 YYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|325690383|gb|EGD32387.1| peptide deformylase [Streptococcus sanguinis SK115] Length = 136 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 12/139 (8%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + F + R SR + D+ + + E + IGLAA IGV R+++ Sbjct: 9 IFFLQQLSERASREDLYLAQDLQDTLQANRE-----NCIGLAANMIGVRKRVIIF----- 58 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + P+V NP +++ S + +EGCLS+ R +R ITV Y+D + Q Q + Sbjct: 59 LYGLVPVVMFNPVLLSKSGPYKT-EEGCLSLVGSRP-TQRYQEITVDYLDKHWQQQTMTL 116 Query: 127 DGLLATCLQHELDHLNGIL 145 GL A QHELDHL G++ Sbjct: 117 KGLPAQICQHELDHLEGVI 135 >gi|308189670|ref|YP_003922601.1| peptide deformylase [Mycoplasma fermentans JER] gi|307624412|gb|ADN68717.1| peptide deformylase [Mycoplasma fermentans JER] Length = 189 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 30/173 (17%) Query: 6 LVIFPDPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIGV 54 LV P+ ILR+ S+ P+ K + ++ + ++ D G+G+AA+Q G+ Sbjct: 7 LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 66 Query: 55 LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLSIPD-------YR 101 R+ I++ + + V INPK++ S+ + S+ EGCLS+ D Y Sbjct: 67 PKRMFYININNETINGAKIEDFRDVLINPKVLAISEYEVSLPGEGCLSVGDNIKNQEGYV 126 Query: 102 ADVKRSAFITVRYMDCNAQHQ--IIYADGLLATCLQHELDHLNGILFIDHLSR 152 KR Y + +H + YA A QHE DHL G LFID +++ Sbjct: 127 YRKKRIVLEAYSYFEKKVKHYDLVDYA----AIVAQHEFDHLEGKLFIDRINK 175 >gi|322373777|ref|ZP_08048312.1| peptide deformylase [Streptococcus sp. C150] gi|321277149|gb|EFX54219.1| peptide deformylase [Streptococcus sp. C150] Length = 204 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 18/131 (13%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS-DD 86 E M G+GLAA Q+ + R++ + + + NP + NPK++ S D Sbjct: 63 EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQD 122 Query: 87 FSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 ++ + EGCLS+ P Y V R A +TV Y + + + I G + +QHE+DH Sbjct: 123 AALGEGEGCLSVDRDVPGY---VVRHARVTVEYFNKEGEKKRIKFRGYNSIVVQHEIDHT 179 Query: 142 NGILFIDHLSR 152 NGI+F DH+++ Sbjct: 180 NGIMFYDHINK 190 >gi|149007536|ref|ZP_01831171.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|149007898|ref|ZP_01831485.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|147760625|gb|EDK67599.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|147760895|gb|EDK67865.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|332074306|gb|EGI84783.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA17545] Length = 136 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP +++F + +EGCLS+ R+ Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR + Y D Q Q I G A QHELDHL G Sbjct: 95 KRYETTRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|255523790|ref|ZP_05390755.1| formylmethionine deformylase [Clostridium carboxidivorans P7] gi|255512493|gb|EET88768.1| formylmethionine deformylase [Clostridium carboxidivorans P7] Length = 165 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 11/150 (7%) Query: 1 MVKKPLVIFPDPILRRV----SRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55 M+K+ L++ D + ++ ++ I +++L D +++ + G +AA QIGV Sbjct: 1 MLKEILLLGNDALYKKSLLVQKEELDSIKGTVLDLHDTLIDFRKKYNAGRAIAAPQIGVF 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + + P+VFINP + + + + C+S P+ V R TV Y Sbjct: 61 KRLI------YMYIDKPIVFINPILKFDNKEIMEVMDDCMSFPNLLVKVNRYKECTVMYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145 D + + I +G L+ +QHE DHL+GIL Sbjct: 115 DIDFIDRTIKFEGNLSELIQHEYDHLDGIL 144 >gi|257790516|ref|YP_003181122.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] gi|257474413|gb|ACV54733.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] Length = 136 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 8/134 (5%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +L+R S P + + I + + LE + +G+AA IG L R++V D +H Sbjct: 11 VLQRASAPATEADLPIAQDLLDTLEA-HRHSCVGMAANMIGELKRIIVFD-DGGSH---- 64 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + +NP+II+ + + +EGCLS+ R+ R I V Y D + ++ G A Sbjct: 65 VAMLNPEIISCAGTYEA-EEGCLSLSGTRS-ATRYRTIKVSYQDLAMKPRVKTFTGFTAQ 122 Query: 133 CLQHELDHLNGILF 146 +QHE+DH NG+L Sbjct: 123 IIQHEIDHCNGVLI 136 >gi|325684372|gb|EGD26541.1| peptide deformylase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 207 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 23/162 (14%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIG---V 54 DP+LR+V++ + SD L D+M+E + ++ G+GLAA Q+G Sbjct: 35 DPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAPQVGEGVS 94 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110 + L+V D + K V++NP+II+ S + EG CLS+ D D V R + Sbjct: 95 MAALLVPDDKGEIIFKE--VYVNPEIISESVRKTCLGEGEGCLSV-DKVIDGYVPRPNKV 151 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 152 TVHYWTADGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINK 193 >gi|309798501|ref|ZP_07692783.1| peptide deformylase [Streptococcus infantis SK1302] gi|308117873|gb|EFO55267.1| peptide deformylase [Streptococcus infantis SK1302] Length = 203 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 17/132 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNPM-----VFINPKIITFS-D 85 M E + G+GLAA Q+ + R++ + ++ + V NPKI++ S Sbjct: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQ 120 Query: 86 DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+DH Sbjct: 121 DAALGEGEGCLSVDRAVPGY---VIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 177 Query: 141 LNGILFIDHLSR 152 LNGI+F D ++ Sbjct: 178 LNGIMFYDRINE 189 >gi|319776853|ref|YP_004136504.1| peptide deformylase [Mycoplasma fermentans M64] gi|318037928|gb|ADV34127.1| Peptide deformylase [Mycoplasma fermentans M64] Length = 189 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 30/173 (17%) Query: 6 LVIFPDPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIGV 54 LV P+ ILR+ S+ P+ K + ++ + ++ D G+G+AA+Q G+ Sbjct: 7 LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 66 Query: 55 LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLSIPD-------YR 101 R+ I++ + + V INPK++ S+ + S+ EGCLS+ D Y Sbjct: 67 PKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGYV 126 Query: 102 ADVKRSAFITVRYMDCNAQHQ--IIYADGLLATCLQHELDHLNGILFIDHLSR 152 KR Y + +H + YA A QHE DHL G LFID +++ Sbjct: 127 YRKKRIVLEAYSYFEKKVKHYDLVDYA----AIVAQHEFDHLEGKLFIDRINK 175 >gi|295106021|emb|CBL03564.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae 7-10-1-b] Length = 136 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 9/115 (7%) Query: 31 LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY 90 L+D + ++ + +G+AA IG R++V D + P V NP+I+ S + Sbjct: 30 LLDTL--AAHAHECVGMAANMIGTAKRIIVFDDEG-----TPRVMFNPEIVGRSGTYEA- 81 Query: 91 QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +EGCLS+P R R I VR+ D Q + G A +QHE+DH +GIL Sbjct: 82 EEGCLSLPGSR-RTTRYRTIKVRFEDRGFQPREQTFTGFTAQIIQHEIDHCDGIL 135 >gi|331266006|ref|YP_004325636.1| polypeptide deformylase, putative [Streptococcus oralis Uo5] gi|326682678|emb|CBZ00295.1| polypeptide deformylase, putative [Streptococcus oralis Uo5] Length = 136 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP ++++ + +EGCLS+ R Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPIVMFNPILLSYEGPYET-EEGCLSLTGVRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 R ITV Y D Q Q I G QHELDHL G Sbjct: 95 TRFETITVSYRDSKWQEQTITLTGFPVQICQHELDHLEG 133 >gi|306829233|ref|ZP_07462423.1| peptide deformylase [Streptococcus mitis ATCC 6249] gi|304428319|gb|EFM31409.1| peptide deformylase [Streptococcus mitis ATCC 6249] Length = 208 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSD 85 M E M G+GLAA Q+ + R++ + + + A+ +++ NPKI++ S Sbjct: 66 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPEEAYDLQAIMY-NPKIVSHSV 124 Query: 86 DFSVYQEG--CLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 + EG CLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 125 QNAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 181 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 182 HINGIMFYDRINE 194 >gi|307702002|ref|ZP_07639010.1| peptide deformylase [Streptococcus mitis NCTC 12261] gi|307616647|gb|EFN95836.1| peptide deformylase [Streptococcus mitis NCTC 12261] Length = 203 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMY-NPKIVSHSV 119 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 177 HINGIMFYDRINE 189 >gi|104773846|ref|YP_618826.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122983972|sp|Q1GAR4|DEF_LACDA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|103422927|emb|CAI97589.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 184 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 23/162 (14%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIG---V 54 DP+LR+V++ + SD L D+M+E + ++ G+GLAA Q+G Sbjct: 12 DPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAPQVGEGVS 71 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110 + L+V D + K V++NP+II+ S + EG CLS+ D D V R + Sbjct: 72 MAALLVPDDKGEIIFKE--VYVNPEIISESVRKTCLSEGEGCLSV-DKVIDGYVPRPNKV 128 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 129 TVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINK 170 >gi|167751759|ref|ZP_02423886.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702] gi|167655567|gb|EDR99696.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702] gi|291557962|emb|CBL35079.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum V10Sc8a] Length = 136 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IG+L ++ I+ + ++ NP+II SD +EGCLS+ R Sbjct: 42 VGMAANMIGILKNIIAIN-----DNGDYLLMYNPEIIK-SDGAYETEEGCLSLDGLRK-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR I VRY+D N + +I +G A +QHE DHL+GI+ Sbjct: 95 KRYKKIKVRYLDRNFKIKIKTYEGFTAQIIQHETDHLSGII 135 >gi|332652856|ref|ZP_08418601.1| peptide deformylase [Ruminococcaceae bacterium D16] gi|332518002|gb|EGJ47605.1| peptide deformylase [Ruminococcaceae bacterium D16] Length = 136 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 9/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 +++ E D + + ++LE + + +G+AA IGV R++ D + MV Sbjct: 12 LAQKAEPATPDDLPIAADLLETLEHHKAGCVGMAANMIGVNKRIIAFD-----NEGTYMV 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP+II S + +EGCLS+ R KR I VR+ + Q ++ G A + Sbjct: 67 MFNPEIIKQSGPYEA-EEGCLSLTGTRP-AKRWKSIKVRWQNEKFQERLKTFTGWTAQII 124 Query: 135 QHELDHLNGIL 145 QHE+DH GI+ Sbjct: 125 QHEIDHCEGII 135 >gi|218283358|ref|ZP_03489392.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989] gi|218215912|gb|EEC89450.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989] Length = 145 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 8/128 (6%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 S P K+++ + + + L+ YS +G+AA IGV +++ ++ +V N Sbjct: 25 SAPATKMDTQVAQDLKDTLQA-YSDQCVGMAANMIGVSKNIIIFAIEPAQ-----IVMYN 78 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 PKI S + V +EGCLS+ R + R ITV Y D + + G +A +QHE Sbjct: 79 PKITKKSRPYKV-KEGCLSLEGER-NTTRYENITVEYQDESFKKCKQSYSGFVAQIIQHE 136 Query: 138 LDHLNGIL 145 +DH NGI+ Sbjct: 137 IDHCNGII 144 >gi|15903353|ref|NP_358903.1| peptide deformylase [Streptococcus pneumoniae R6] gi|116516110|ref|YP_816751.1| peptide deformylase [Streptococcus pneumoniae D39] gi|148984798|ref|ZP_01818051.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|148992660|ref|ZP_01822328.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|148997485|ref|ZP_01825090.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|149002851|ref|ZP_01827777.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|149019400|ref|ZP_01834762.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|168483932|ref|ZP_02708884.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00] gi|168489617|ref|ZP_02713816.1| peptide deformylase [Streptococcus pneumoniae SP195] gi|168493357|ref|ZP_02717500.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06] gi|168575913|ref|ZP_02721828.1| peptide deformylase [Streptococcus pneumoniae MLV-016] gi|169833382|ref|YP_001694872.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|182684413|ref|YP_001836160.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|221232181|ref|YP_002511334.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225854897|ref|YP_002736409.1| peptide deformylase [Streptococcus pneumoniae JJA] gi|225859217|ref|YP_002740727.1| peptide deformylase [Streptococcus pneumoniae 70585] gi|237651106|ref|ZP_04525358.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974] gi|237821019|ref|ZP_04596864.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2] gi|303254384|ref|ZP_07340491.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|303259052|ref|ZP_07345031.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|303261732|ref|ZP_07347679.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|303264405|ref|ZP_07350325.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|303267527|ref|ZP_07353375.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|303269331|ref|ZP_07355104.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|307068106|ref|YP_003877072.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|39930890|sp|Q8DP79|DEF_STRR6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122278363|sp|Q04JP7|DEF_STRP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238688366|sp|B1ICN7|DEF_STRPI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238691170|sp|B2IQS1|DEF_STRPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767602|sp|C1C851|DEF_STRP7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767603|sp|B8ZL02|DEF_STRPJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767605|sp|C1CF38|DEF_STRZJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|15458954|gb|AAL00114.1| Peptide deformylase, N-formylmethionylaminoacyl-tRNA deformylase [Streptococcus pneumoniae R6] gi|15858846|gb|AAK13238.1| peptide deformylase DefB [Streptococcus pneumoniae] gi|116076686|gb|ABJ54406.1| peptide deformylase [Streptococcus pneumoniae D39] gi|147756540|gb|EDK63581.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|147759145|gb|EDK66139.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|147922820|gb|EDK73936.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|147928677|gb|EDK79691.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|147931270|gb|EDK82249.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|168995884|gb|ACA36496.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|172042804|gb|EDT50850.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00] gi|182629747|gb|ACB90695.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|183571999|gb|EDT92527.1| peptide deformylase [Streptococcus pneumoniae SP195] gi|183576731|gb|EDT97259.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06] gi|183578335|gb|EDT98863.1| peptide deformylase [Streptococcus pneumoniae MLV-016] gi|220674642|emb|CAR69211.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225721908|gb|ACO17762.1| peptide deformylase [Streptococcus pneumoniae 70585] gi|225722966|gb|ACO18819.1| peptide deformylase [Streptococcus pneumoniae JJA] gi|301800306|emb|CBW32932.1| polypeptide deformylase [Streptococcus pneumoniae OXC141] gi|301802184|emb|CBW34930.1| polypeptide deformylase [Streptococcus pneumoniae INV200] gi|302598631|gb|EFL65670.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|302637312|gb|EFL67800.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|302639995|gb|EFL70451.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|302641161|gb|EFL71535.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|302642928|gb|EFL73227.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|302646217|gb|EFL76444.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|306409643|gb|ADM85070.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|332073763|gb|EGI84242.1| peptide deformylase [Streptococcus pneumoniae GA17570] gi|332073793|gb|EGI84271.1| peptide deformylase [Streptococcus pneumoniae GA41301] gi|332200898|gb|EGJ14970.1| peptide deformylase [Streptococcus pneumoniae GA41317] gi|332201894|gb|EGJ15964.1| peptide deformylase [Streptococcus pneumoniae GA47368] Length = 203 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 119 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 177 HINGIMFYDRINE 189 >gi|15901306|ref|NP_345910.1| peptide deformylase [Streptococcus pneumoniae TIGR4] gi|111657373|ref|ZP_01408130.1| hypothetical protein SpneT_02001427 [Streptococcus pneumoniae TIGR4] gi|148990264|ref|ZP_01821475.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|149007273|ref|ZP_01830931.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|149011684|ref|ZP_01832880.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|168486151|ref|ZP_02710659.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00] gi|168491354|ref|ZP_02715497.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|225857082|ref|YP_002738593.1| peptide deformylase [Streptococcus pneumoniae P1031] gi|225860775|ref|YP_002742284.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298230951|ref|ZP_06964632.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254975|ref|ZP_06978561.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502590|ref|YP_003724530.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|307126974|ref|YP_003879005.1| peptide deformylase [Streptococcus pneumoniae 670-6B] gi|17432945|sp|Q9F2F0|DEF_STRPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767606|sp|C1CLF5|DEF_STRZP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767607|sp|C1CQR2|DEF_STRZT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|11125374|emb|CAC15392.1| polypeptide deformylase [Streptococcus pneumoniae] gi|14972945|gb|AAK75550.1| peptide deformylase [Streptococcus pneumoniae TIGR4] gi|15858850|gb|AAK13240.1| peptide deformylase DefB [Streptococcus pneumoniae] gi|147761077|gb|EDK68045.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|147764115|gb|EDK71047.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|147924403|gb|EDK75493.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|183570800|gb|EDT91328.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00] gi|183574326|gb|EDT94854.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|225726126|gb|ACO21978.1| peptide deformylase [Streptococcus pneumoniae P1031] gi|225727795|gb|ACO23646.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298238185|gb|ADI69316.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|306484036|gb|ADM90905.1| peptide deformylase [Streptococcus pneumoniae 670-6B] gi|327389641|gb|EGE87986.1| peptide deformylase [Streptococcus pneumoniae GA04375] gi|332074778|gb|EGI85252.1| peptide deformylase [Streptococcus pneumoniae GA17545] Length = 203 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 119 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 177 HINGIMFYDRINE 189 >gi|256842908|ref|ZP_05548396.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|293381229|ref|ZP_06627236.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|312977571|ref|ZP_07789318.1| peptide deformylase [Lactobacillus crispatus CTV-05] gi|256614328|gb|EEU19529.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|290922197|gb|EFD99192.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|310895310|gb|EFQ44377.1| peptide deformylase [Lactobacillus crispatus CTV-05] Length = 184 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 26/172 (15%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54 DP+LR+V++P+ SD L D+M++ + + G+GLAA Q+G Sbjct: 12 DPVLRQVAKPLTFPFSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111 + L+V D Q K V++NP+I++ S + EG CLS+ + V R +T Sbjct: 72 MAALLVPDDQGKIIFKE--VYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 129 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 + Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQDPFALKEDTV 181 >gi|289168210|ref|YP_003446479.1| peptide deformylase [Streptococcus mitis B6] gi|307704979|ref|ZP_07641866.1| peptide deformylase [Streptococcus mitis SK597] gi|322376907|ref|ZP_08051400.1| peptide deformylase [Streptococcus sp. M334] gi|288907777|emb|CBJ22617.1| peptide deformylase [Streptococcus mitis B6] gi|307621430|gb|EFO00480.1| peptide deformylase [Streptococcus mitis SK597] gi|321282714|gb|EFX59721.1| peptide deformylase [Streptococcus sp. M334] Length = 203 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMY-NPKIVSHSV 119 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 177 HINGIMFYDRINE 189 >gi|238809638|dbj|BAH69428.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 195 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 30/173 (17%) Query: 6 LVIFPDPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIGV 54 LV P+ ILR+ S+ P+ K + ++ + ++ D G+G+AA+Q G+ Sbjct: 13 LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 72 Query: 55 LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLSIPD-------YR 101 R+ I++ + + V INPK++ S+ + S+ EGCLS+ D Y Sbjct: 73 PKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGYV 132 Query: 102 ADVKRSAFITVRYMDCNAQHQ--IIYADGLLATCLQHELDHLNGILFIDHLSR 152 KR Y + +H + YA A QHE DHL G LFID +++ Sbjct: 133 YRKKRIVLEAYSYFEKKVKHYDLVDYA----AIVAQHEFDHLEGKLFIDRINK 181 >gi|325125510|gb|ADY84840.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 184 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 23/162 (14%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIG---V 54 DP+LR+V++ + SD L D+M+E + ++ G+GLAA Q+G Sbjct: 12 DPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHHLRAGVGLAAPQVGEGVS 71 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110 + L+V D + K V++NP+II+ S + EG CLS+ D D V R + Sbjct: 72 MAALLVPDDKGEIIFKE--VYVNPEIISESVRKTCLSEGEGCLSV-DKVIDGYVPRPNKV 128 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 129 TVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINK 170 >gi|116513853|ref|YP_812759.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275377|sp|Q04B51|DEF_LACDB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116093168|gb|ABJ58321.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 184 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 23/162 (14%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIG---V 54 DP+LR+V++ + SD L D+M+E + ++ G+GLAA Q+G Sbjct: 12 DPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAPQVGEGVS 71 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110 + L+V D + K V++NP+II+ S + EG CLS+ D D V R + Sbjct: 72 MAALLVPDDKGEIIFKE--VYVNPEIISESVRKTCLSEGEGCLSV-DKVIDGYVPRPNKV 128 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 129 TVHYWTVDGEEKAIRLKGYPAIVSGHEIDHLNGHLFYDRINK 170 >gi|28378768|ref|NP_785660.1| peptide deformylase [Lactobacillus plantarum WCFS1] gi|254556973|ref|YP_003063390.1| peptide deformylase [Lactobacillus plantarum JDM1] gi|38257321|sp|Q88VB2|DEF_LACPL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28271605|emb|CAD64511.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1] gi|254045900|gb|ACT62693.1| peptide deformylase [Lactobacillus plantarum JDM1] Length = 186 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 11/146 (7%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 +S +K+ +D+M ++N + + G+GLAA Q+ V ++ + + Sbjct: 26 LSEADQKLANDMMEYLENSQDPELAKKYGLRAGVGLAAPQVDVSEQMAAVLVPSENEDDE 85 Query: 72 PM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ V INP II+ S EG CLS+ D V R IT+RY + + + I Sbjct: 86 PVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGYVIRHDRITLRYYNMAGEEKKIR 145 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 A QHE+DHL+GILF DH++ Sbjct: 146 LKNYPAIVCQHEIDHLHGILFYDHIN 171 >gi|169404547|pdb|2OS0|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E. Faecalis And S. Pyogenes Length = 188 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 20/162 (12%) Query: 11 DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57 +P LR V+ + ++ D++ + N + + + + +GLAA Q+ + R Sbjct: 12 NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGLAAPQLDISKR 71 Query: 58 LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110 ++ + + + + P V NPKI++ S D + + EGCLS+ D V R I Sbjct: 72 IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173 >gi|75766232|pdb|2AI7|A Chain A, S.Pneumoniae Polypeptide Deformylase Complexed With Sb- 485345 gi|75766238|pdb|2AIA|A Chain A, S.Pneumoniae Pdf Complexed With Sb-543668 Length = 203 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 119 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 177 HINGIMFYDRINE 189 >gi|75766239|pdb|2AIE|P Chain P, S.Pneumoniae Polypeptide Deformylase Complexed With Sb- 505684 Length = 203 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 119 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 177 HINGIMFYDRINE 189 >gi|104773326|ref|YP_618306.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422407|emb|CAI96944.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 143 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 17/147 (11%) Query: 8 IFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGI----GLAAVQIGVLYRLV 59 I DP+ +S+P K + +L+D +L S DG+ GLAA IGV ++ Sbjct: 6 IIHDPL--SLSQPAAKAAASDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMIGVNKAII 63 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ P+V +NP I+ S + + +EGCLS+P R R ITV+Y D + Sbjct: 64 AVNA-----GFLPIVMLNPTIVKRSGHY-LAEEGCLSLPGERP-ADRYEEITVKYQDMDL 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + G +A +QHE+DH G L Sbjct: 117 EEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|300811352|ref|ZP_07091849.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123463|ref|YP_004033722.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300497716|gb|EFK32741.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280026|gb|ADQ60745.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 184 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 23/162 (14%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIG---V 54 DP+LR+V++ + SD L D+M+E + ++ G+GLAA Q+G Sbjct: 12 DPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAPQVGEGVS 71 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110 + L+V D + K V++NP+II+ S + EG CLS+ D D V R + Sbjct: 72 MAALLVPDDKGEIIFKE--VYVNPEIISESVRKTCLGEGEGCLSV-DKVIDGYVPRPNKV 128 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 129 TVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINK 170 >gi|307708362|ref|ZP_07644829.1| peptide deformylase [Streptococcus mitis NCTC 12261] gi|307615808|gb|EFN95014.1| peptide deformylase [Streptococcus mitis NCTC 12261] Length = 136 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L P+V NP +++ S+ +EGCLS+ R Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLS-SEGVYETEEGCLSLTGVRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR I V Y D Q Q I G A QHELDHL G Sbjct: 95 KRYEIIRVAYCDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|227877349|ref|ZP_03995420.1| peptide deformylase [Lactobacillus crispatus JV-V01] gi|256848717|ref|ZP_05554151.1| peptide deformylase [Lactobacillus crispatus MV-1A-US] gi|295692713|ref|YP_003601323.1| peptide deformylase [Lactobacillus crispatus ST1] gi|227863017|gb|EEJ70465.1| peptide deformylase [Lactobacillus crispatus JV-V01] gi|256714256|gb|EEU29243.1| peptide deformylase [Lactobacillus crispatus MV-1A-US] gi|295030819|emb|CBL50298.1| Peptide deformylase [Lactobacillus crispatus ST1] Length = 184 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 26/172 (15%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54 DP+LR+V++P+ SD L D+M++ + + G+GLAA Q+G Sbjct: 12 DPVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111 + L+V D Q K V++NP+I++ S + EG CLS+ + V R +T Sbjct: 72 MAALLVPDDQGKIIFKE--VYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 129 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 + Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQDPFALKEDTV 181 >gi|307709244|ref|ZP_07645702.1| peptide deformylase [Streptococcus mitis SK564] gi|307619827|gb|EFN98945.1| peptide deformylase [Streptococcus mitis SK564] Length = 203 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMY-NPKIVSHSV 119 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 177 HINGIMFYDRINE 189 >gi|301794480|emb|CBW36919.1| polypeptide deformylase [Streptococcus pneumoniae INV104] gi|332203286|gb|EGJ17354.1| peptide deformylase [Streptococcus pneumoniae GA47901] Length = 203 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEGIMY-NPKIVSHSV 119 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 177 HINGIMFYDRINE 189 >gi|308180961|ref|YP_003925089.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046452|gb|ADN98995.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 186 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 11/146 (7%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 +S +K+ +D+M ++N + + G+GLAA Q+ V ++ + + Sbjct: 26 LSEADQKLANDMMEYLENSQDPELAKKYGLRAGVGLAAPQVDVSEQMAAVLVPSENEDDE 85 Query: 72 PM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ V INP II+ S EG CLS+ D V R IT+RY + + + I Sbjct: 86 PVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGYVIRHDRITLRYYNMAGEEKKIR 145 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 A QHE+DHL+GILF DH++ Sbjct: 146 LKNYPAIVCQHEIDHLHGILFYDHIN 171 >gi|322386870|ref|ZP_08060494.1| peptide deformylase [Streptococcus cristatus ATCC 51100] gi|321269152|gb|EFX52088.1| peptide deformylase [Streptococcus cristatus ATCC 51100] Length = 136 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 9/139 (6%) Query: 8 IFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 I DP L++ S P K++ + + + L + + +GLAA IG R+++ Sbjct: 5 IVKDPFFLQQKSVPATKVDLFLAQDLQDTL-LAHRESCVGLAANMIGSQKRVIIF----- 58 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + PMV NP +I S + +EGCLS+ R + R ITV Y+D N + I Sbjct: 59 MYVMLPMVMFNPVLIQKSGPYET-EEGCLSLAGSRPTI-RYQKITVEYLDQNWLKKTITL 116 Query: 127 DGLLATCLQHELDHLNGIL 145 + A QHELDHL GIL Sbjct: 117 EDFPAQICQHELDHLEGIL 135 >gi|322388152|ref|ZP_08061756.1| peptide deformylase [Streptococcus infantis ATCC 700779] gi|321140824|gb|EFX36325.1| peptide deformylase [Streptococcus infantis ATCC 700779] Length = 203 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 17/132 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNPM-----VFINPKIITFS-D 85 M E + G+GLAA Q+ + R++ + ++ + V NPKI++ S Sbjct: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQ 120 Query: 86 DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 D ++ + EGCLS+ P Y V R A +TV Y D + + I G + +QHE+DH Sbjct: 121 DAALGEGEGCLSVDRTVPGY---VIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 177 Query: 141 LNGILFIDHLSR 152 LNG++F D ++ Sbjct: 178 LNGVMFYDRINE 189 >gi|299822499|ref|ZP_07054385.1| peptide deformylase [Listeria grayi DSM 20601] gi|299816028|gb|EFI83266.1| peptide deformylase [Listeria grayi DSM 20601] Length = 182 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 10/114 (8%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI---- 97 G+GLAA Q+ VL R++ I ++D R NPKI + S + EGCLS+ Sbjct: 58 GVGLAAPQLAVLKRIIAIHIEDE-DRTYSYTLYNPKIRSHSVQEACLAGGEGCLSVDREV 116 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 P + V R +T+ D + + A +QHE+DHLNG++F DH++ Sbjct: 117 PGF---VVRKERVTIEAFDEDGNPIKLRLKSYPAIVVQHEIDHLNGVMFYDHIN 167 >gi|311745501|ref|ZP_07719286.1| peptide deformylase [Algoriphagus sp. PR1] gi|126578054|gb|EAZ82274.1| peptide deformylase [Algoriphagus sp. PR1] Length = 161 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 6/102 (5%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G G+AA Q+G++ R+ ++L P + +NP++ S++ + C+S P Sbjct: 51 GRGIAAPQLGIMKRMFYLNLD------KPYIILNPELKNPSEEMFELWDDCMSFPKLLVK 104 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 V+R +T+ Y D N Q G + +QHE DHL+G+L Sbjct: 105 VRRHQSLTLSYRDQNWTLQEWKVSGENSELIQHEYDHLDGVL 146 >gi|300361479|ref|ZP_07057656.1| peptide deformylase [Lactobacillus gasseri JV-V03] gi|300354098|gb|EFJ69969.1| peptide deformylase [Lactobacillus gasseri JV-V03] Length = 184 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 17/159 (10%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P+LR+V++P+ + + L D M++ + ++ G+GLAA Q+G + Sbjct: 12 NPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGKSIQ 71 Query: 58 LVVIDL-QDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSI-PDYRADVKRSAFITVR 113 + + + D VF+NPKI++ S + EGCLS+ D V R + + Sbjct: 72 MAALLVPNDKGEIIFKEVFVNPKILSESVRKACLAEGEGCLSVDKDIEGYVPRPDKLKIH 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + + I A HE+DHLNG LF D +++ Sbjct: 132 YYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|171778809|ref|ZP_02919871.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282455|gb|EDT47879.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 204 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 12/128 (9%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--D 85 E M G+GLAA Q+ V R++ + + + + NP V NPK++ S D Sbjct: 63 EKMGLRGGVGLAAPQLNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQD 122 Query: 86 DFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 EGCLS+ V R + +TV Y D N + I G + +QHE+DH NGI Sbjct: 123 AALADGEGCLSVDRVVEGYVVRHSRVTVEYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGI 182 Query: 145 LFIDHLSR 152 +F D ++ Sbjct: 183 MFYDRINE 190 >gi|306829860|ref|ZP_07463047.1| peptide deformylase [Streptococcus mitis ATCC 6249] gi|304427871|gb|EFM30964.1| peptide deformylase [Streptococcus mitis ATCC 6249] Length = 136 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IG R+++ +L PMV NP ++++ + +EGCLS+ R Sbjct: 42 VGLAANMIGEQKRVIIFNLG-----LVPMVMFNPILLSYKGPYET-EEGCLSLTGVRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 R I V Y D Q Q I G A QHELDHL G Sbjct: 95 TRYETIKVSYRDSKWQEQTITLTGFPAQICQHELDHLEG 133 >gi|229821583|ref|YP_002883109.1| Peptide deformylase [Beutenbergia cavernae DSM 12333] gi|229567496|gb|ACQ81347.1| Peptide deformylase [Beutenbergia cavernae DSM 12333] Length = 217 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 29/188 (15%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM-----NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+V P+LR P + ++ L++ M M + G+GLAA QIG+ + Sbjct: 20 PIVSAGAPVLRA---PAARYGGELGAERFHRLLEAMRVTMRTAPGVGLAAPQIGLPLAIA 76 Query: 60 VI-------DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 VI D A + P+ F +NP + + EGCLS+P Y A R Sbjct: 77 VIEDPGVDDDATAAARERVPVAFRVLVNPTYTPAGPERVSFYEGCLSVPGYVAVRARWRR 136 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID-----------HLSRLKRDMI 158 + + D G A +QHE+DHL G L++D H R + + Sbjct: 137 VRLLAADEAGNAVAEELAGWPARIVQHEVDHLAGELYLDAAAPRSLASDAHAPRWASEAV 196 Query: 159 TKKMSKLV 166 + + ++ Sbjct: 197 PRGAATVL 204 >gi|322392208|ref|ZP_08065669.1| peptide deformylase [Streptococcus peroris ATCC 700780] gi|321144743|gb|EFX40143.1| peptide deformylase [Streptococcus peroris ATCC 700780] Length = 203 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 19/131 (14%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS--D 85 E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S D Sbjct: 63 EKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPTEAYSMQAVMY-NPKIVSHSVQD 121 Query: 86 DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 EGCLS+ P Y V R A +TV Y D + + I G + +QHE+DH Sbjct: 122 AALAEGEGCLSVDREVPGY---VIRHARVTVEYFDKDGEKHRIKLKGYNSIVVQHEIDHT 178 Query: 142 NGILFIDHLSR 152 NG++F D ++ Sbjct: 179 NGVMFYDRINE 189 >gi|289645164|ref|ZP_06477181.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505026|gb|EFD26107.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 529 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 13/147 (8%) Query: 13 ILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 IL + +RP + ++ +++ + I+ + + G+G+AA Q+G+ ++ Sbjct: 363 ILSKPARPFDLPAEAEDARRVVAELSSAIERVSALHTFGKGMGIAAPQVGINRAAAIVRT 422 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D + + +NP +I S + EGCLS D R V R + V + D + +I Sbjct: 423 VD----GDTITLLNPTVIEASPETDEQYEGCLSFFDVRGLVPRPLTLHVEHADIDGTRRI 478 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150 I + LA + HE+DHL+G L+ D + Sbjct: 479 IAFEKGLARLVAHEIDHLDGHLYTDKM 505 >gi|152991786|ref|YP_001357507.1| hypothetical protein SUN_0190 [Sulfurovum sp. NBC37-1] gi|151423647|dbj|BAF71150.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 273 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV+K LVI+PD + S + N + +++++M + M + D +AA+QI Y +++ Sbjct: 1 MVQK-LVIYPDDRMNCTSTDVRSFNQTLWDVLEDMRDTMLAHDIKAMAAMQIAYPYNIIL 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + H +INP+II D F +E + PD + R I + Y D N Q Sbjct: 60 IKEGEEYHE-----YINPRIIKNEDLFDS-EESSIHYPDVTVTIPRYGKIKLVYEDRNGQ 113 Query: 121 -HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 H D LA LQ ++D G +D + + R+ I Sbjct: 114 VHYEDIEDRELAATLQRKIDITFGGNILDKVDKNTREKI 152 >gi|326803937|ref|YP_004321755.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a] gi|326650536|gb|AEA00719.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a] Length = 192 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 22/164 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54 +P+L R + I +N +M+E +Y++ G+GLAA Q+G+ Sbjct: 12 NPVLHREADTITFPLNEAQKQAAHDMMEYLYNSQDEEKGPELGLRAGVGLAAPQVGIGEK 71 Query: 55 LYRLVVIDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEG--CLSIPD-YRADVKRSA 108 + L+V +++D + V +NPKII+ S + +EG CLS+ D V R A Sbjct: 72 MIALLVPNIEDPDSDEEIILEGVMVNPKIISHSVEKVCLREGEGCLSVDDDVSGYVPRYA 131 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT+ Y D H G A LQHE+DHL+G L+ + +++ Sbjct: 132 RITITYDDLEGNHFKKRFKGYPAIVLQHEIDHLDGHLYYERINK 175 >gi|300768287|ref|ZP_07078192.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494351|gb|EFK29514.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 186 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 11/146 (7%) Query: 17 VSRPIEKINSDIMNLIDNM----LEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 +S +K+ +D+M ++N L Y G+GLAA Q+ V ++ + + Sbjct: 26 LSEADQKLANDMMEYLENSQNPELAKKYGLRAGVGLAAPQVDVSEQMAAVLVPSENEDDE 85 Query: 72 PM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ V INP II+ S EG CLS+ D V R IT+RY + + + I Sbjct: 86 PVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGYVIRHDRITLRYYNMAGEEKKIR 145 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 A QHE+DHL+GILF DH++ Sbjct: 146 LKNYPAIVCQHEIDHLHGILFYDHIN 171 >gi|332522419|ref|ZP_08398671.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176] gi|332313683|gb|EGJ26668.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176] Length = 204 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 16/142 (11%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITF 83 M E + G+GLAA Q+ + R++ + +++D NP V NPK++ Sbjct: 61 MAEKLDLRGGVGLAAPQLDISKRIIAVLVPNMEDS--EGNPPKEAYSLQEVMYNPKVVAH 118 Query: 84 S--DDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 S D EGCLS+ V R + +TV Y + + + Q I G A +QHE+DH Sbjct: 119 SVQDAALAEGEGCLSVDRPIEGYVVRHSRVTVDYYNKDGEKQRIKLKGYNAIVVQHEIDH 178 Query: 141 LNGILFIDHLSRLKRDMITKKM 162 +NGI+F D +++ I + M Sbjct: 179 INGIMFYDRINQADPFAINEGM 200 >gi|308235345|ref|ZP_07666082.1| peptide deformylase [Gardnerella vaginalis ATCC 14018] gi|311114315|ref|YP_003985536.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] gi|310945809|gb|ADP38513.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] Length = 217 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 10/148 (6%) Query: 11 DPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P+LR+ V+ + + + LI M M G+GLAA QIG+ + V++ Sbjct: 36 EPVLRQRTVAYDGQLTRATLNKLISLMHSTMLDAPGVGLAAPQIGLGLAIAVVEDHVRDD 95 Query: 69 RKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +P INP + EGCLS+ Y+A +R I + D + + Sbjct: 96 ADDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVAGYQAVRQRWLDIQATWQDEDGK 155 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 G A QHE DHL G L+ID Sbjct: 156 QHSERLHGWPARIFQHETDHLRGELYID 183 >gi|225550917|ref|ZP_03771866.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225380071|gb|EEH02433.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 198 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 20/167 (11%) Query: 5 PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYST--------DGIGLAA 49 P IF P PILR V++ IE +++ D + + M ++V Y GI +AA Sbjct: 18 PQWIFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAA 77 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-VKR 106 Q+G I D A +++ + INP II S + + EGCLS+ D R+ V R Sbjct: 78 NQVGWNKCATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIR 136 Query: 107 SAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152 + + V+ D ++ I G++A C+QHE+ HL+ L+ D++++ Sbjct: 137 NKKVHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQ 183 >gi|313889599|ref|ZP_07823243.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] gi|313122026|gb|EFR45121.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] Length = 204 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 16/142 (11%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITF 83 M E + G+GLAA Q+ + R++ + +++D NP V NPKI+ Sbjct: 61 MAEKLDLRGGVGLAAPQLDISKRVIAVLVPNMEDS--EGNPPKEAYSLQEVMYNPKIVAH 118 Query: 84 S--DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 S D EGCLS+ V R + +TV Y + + + Q I G A +QHE+DH Sbjct: 119 SVQDAALAEGEGCLSVDRLIEGYVVRHSRVTVDYYNKDGEKQRIKLKGYNAIVVQHEIDH 178 Query: 141 LNGILFIDHLSRLKRDMITKKM 162 +NGI+F D ++ I + M Sbjct: 179 INGIMFYDRINEADPFAINEGM 200 >gi|116334552|ref|YP_796079.1| peptide deformylase [Lactobacillus brevis ATCC 367] gi|116099899|gb|ABJ65048.1| N-formylmethionyl-tRNA deformylase [Lactobacillus brevis ATCC 367] Length = 136 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++V+D+ P+ INP+I + + QEGCLS+ R Sbjct: 42 VGMAANMIGVNRRIIVVDMGIL-----PVAMINPEITKMAGPYDT-QEGCLSLSGERP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V +++ N Q Q G +A +QHE++H NGIL Sbjct: 95 HRFKTIDVTFLNQNFQKQRQTFTGFVAQIIQHEVEHCNGIL 135 >gi|222151046|ref|YP_002560200.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402] gi|222120169|dbj|BAH17504.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402] Length = 136 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 64/116 (55%), Gaps = 4/116 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K L+ + +L R + + + ++ + LI ++ + ++ +G+G+AA QIGV ++ ++D+ Sbjct: 3 KQLIEEQNSLLHREVKDVTQFDASLKALIKDLEDTLFHHNGVGIAAPQIGVDLKVALVDM 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + +NPKI+++S++ EGCLSIP V RS I + D + Sbjct: 63 E----ADGILQLVNPKIVSYSEETESDVEGCLSIPGVFGLVDRSIEIVIEANDLDG 114 >gi|308070801|ref|YP_003872406.1| peptide deformylase (PDF) [Paenibacillus polymyxa E681] gi|305860080|gb|ADM71868.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681] Length = 193 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 17/167 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTD------------GIGL 47 ++ K +V +PILR P+ ++ D + + ML+ + ++ G+GL Sbjct: 9 LLTKDIVREGEPILRTKVDPVCLPLSEDDLQQMQWMLDYLKNSQNEELAGRYDLRPGVGL 68 Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-V 104 +A Q+G+ R+ I +D + NPK+++ S + EGCLS+ Y A V Sbjct: 69 SANQVGLNKRMCAIYYED-GDKTVEYALFNPKLVSHSTSMIYLEQGEGCLSVDRYVAGYV 127 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R I ++ + +++ G A +QHE+DHL+GI+F D ++ Sbjct: 128 PRYEKIRIKATLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRIN 174 >gi|24378660|ref|NP_720615.1| peptide deformylase [Streptococcus mutans UA159] gi|39930891|sp|Q8DWC2|DEF_STRMU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|24376521|gb|AAN57921.1|AE014866_3 putative polypeptide deformylase [Streptococcus mutans UA159] Length = 204 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 25/166 (15%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58 P LR V++ + +N D + L + ML+ + ++ G+GLAA Q+ + R+ Sbjct: 25 PTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRI 84 Query: 59 VVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY-RADVKR 106 + + + + + NP V NP+II S D EGCLS+ V R Sbjct: 85 IAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGCLSVDRVVEGYVIR 144 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +T+ Y D N+ + + G + +QHE+DH NGI+F D ++ Sbjct: 145 HSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINE 190 >gi|309807220|ref|ZP_07701192.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b] gi|308166358|gb|EFO68565.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b] Length = 184 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56 +LR+V + + +N L ++M++ + ++ G+GLAA Q+G + Sbjct: 14 VLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQMA 73 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113 L+V D Q + K F+NPKII+ S + EG CLS+ D + V R+ + ++ Sbjct: 74 ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + + I G A HE+DHLNG LF D + + Sbjct: 132 YQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|315222331|ref|ZP_07864237.1| peptide deformylase [Streptococcus anginosus F0211] gi|315188664|gb|EFU22373.1| peptide deformylase [Streptococcus anginosus F0211] Length = 204 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 18/133 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + + ++ NP V N K++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKVVAHSV 120 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + I G + +QHE+D Sbjct: 121 QDAALAEGEGCLSVDREVPGY---VVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEID 177 Query: 140 HLNGILFIDHLSR 152 H NGI+F D ++ Sbjct: 178 HTNGIMFYDRINE 190 >gi|259500700|ref|ZP_05743602.1| peptide deformylase [Lactobacillus iners DSM 13335] gi|312871379|ref|ZP_07731474.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a] gi|259168084|gb|EEW52579.1| peptide deformylase [Lactobacillus iners DSM 13335] gi|311093032|gb|EFQ51381.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a] Length = 181 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56 +LR+V + + +N L ++M++ + ++ G+GLAA Q+G + Sbjct: 11 VLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQMA 70 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113 L+V D Q + K F+NPKII+ S + EG CLS+ D + V R+ + ++ Sbjct: 71 ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 128 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + + I G A HE+DHLNG LF D + + Sbjct: 129 YQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 167 >gi|194396894|ref|YP_002038089.1| peptide deformylase [Streptococcus pneumoniae G54] gi|238690834|sp|B5E5U9|DEF_STRP4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194356561|gb|ACF55009.1| peptide deformylase [Streptococcus pneumoniae G54] Length = 203 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSD 85 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 119 Query: 86 DFSVYQEG--CLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 + EG CLS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 120 QDAALGEGEXCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 177 HINGIMFYDRINE 189 >gi|329921309|ref|ZP_08277747.1| peptide deformylase [Lactobacillus iners SPIN 1401G] gi|328934601|gb|EGG31105.1| peptide deformylase [Lactobacillus iners SPIN 1401G] Length = 184 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56 +LR+V + + +N L ++M++ + ++ G+GLAA Q+G + Sbjct: 14 VLRQVGKELTFPLNDKYKQLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQMA 73 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113 L+V D Q + K F+NPKII+ S + EG CLS+ D + V R+ + ++ Sbjct: 74 ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + + I G A HE+DHLNG LF D + + Sbjct: 132 YQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|295425019|ref|ZP_06817727.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] gi|295065294|gb|EFG56194.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] Length = 137 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 10/140 (7%) Query: 7 VIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +I L+R S+P K + +I ++L D + + +GLAA IG R++ + Sbjct: 6 IIHDQMFLQRKSQPATKADLNIAIDLRDTL--IAKRNLALGLAANMIGKDKRIIAFYVGP 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A MV INP+II + + + +EGCLS+ R+ KR I V + N +++ Sbjct: 64 LA-----MVMINPRIIDKEERY-ITKEGCLSLSGERS-TKRYKKIRVSFQTMNFENRTQE 116 Query: 126 ADGLLATCLQHELDHLNGIL 145 DGL + +QHE+DH +GIL Sbjct: 117 FDGLTSEVIQHEIDHCDGIL 136 >gi|302191390|ref|ZP_07267644.1| peptide deformylase [Lactobacillus iners AB-1] gi|309809281|ref|ZP_07703150.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D] gi|312872368|ref|ZP_07732438.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1] gi|312873953|ref|ZP_07733989.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d] gi|312875523|ref|ZP_07735526.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b] gi|315653465|ref|ZP_07906386.1| peptide deformylase [Lactobacillus iners ATCC 55195] gi|325911485|ref|ZP_08173896.1| peptide deformylase [Lactobacillus iners UPII 143-D] gi|325912854|ref|ZP_08175232.1| peptide deformylase [Lactobacillus iners UPII 60-B] gi|308170394|gb|EFO72418.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D] gi|311089034|gb|EFQ47475.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b] gi|311090502|gb|EFQ48910.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d] gi|311092191|gb|EFQ50565.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1] gi|315489156|gb|EFU78797.1| peptide deformylase [Lactobacillus iners ATCC 55195] gi|325476685|gb|EGC79840.1| peptide deformylase [Lactobacillus iners UPII 143-D] gi|325477847|gb|EGC80981.1| peptide deformylase [Lactobacillus iners UPII 60-B] Length = 184 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56 +LR+V + + +N L ++M++ + ++ G+GLAA Q+G + Sbjct: 14 VLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQMA 73 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113 L+V D Q + K F+NPKII+ S + EG CLS+ D + V R+ + ++ Sbjct: 74 ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + + I G A HE+DHLNG LF D + + Sbjct: 132 YQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|327488979|gb|EGF20775.1| peptide deformylase [Streptococcus sanguinis SK1058] Length = 136 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 9/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 12 LQQPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVV 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP + + S + +E CLS+ R +R IT+ Y+D + Q Q I GL A Sbjct: 67 MFNPVLRSKSGPYQT-EESCLSLVGSRP-TQRYQEITIDYLDKHWQQQTITLKGLPAQIC 124 Query: 135 QHELDHLNGIL 145 QHELDHL GI+ Sbjct: 125 QHELDHLEGII 135 >gi|23396567|sp|Q92JI7|DEF2_RICCN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 Length = 202 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95 GLAA QIG+ +++ + + A K ++INP D EGC Sbjct: 62 GLAAPQIGISKCIIIFAVHEDAELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCF 121 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 S+ + V R I D N A+G LA +QHE+DHLNG +F+D+++ K Sbjct: 122 SVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKK 180 >gi|260101766|ref|ZP_05752003.1| peptide deformylase [Lactobacillus helveticus DSM 20075] gi|260084410|gb|EEW68530.1| peptide deformylase [Lactobacillus helveticus DSM 20075] Length = 181 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 28/173 (16%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 DP+LR+V++P+ SD L ++M+E + ++ G+GLAA Q+G + Sbjct: 9 DPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 68 Query: 58 LVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFI 110 + + + D K ++F +NP+I++ S + EG CLS+ V R + Sbjct: 69 MAALLVPDD---KGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPRPDKL 125 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 T+ Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 126 TIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKEDTV 178 >gi|111225848|ref|YP_716642.1| putative polypeptide deformylase [Frankia alni ACN14a] gi|111153380|emb|CAJ65136.1| hypothetical protein; putative Polypeptide deformylase [Frankia alni ACN14a] Length = 550 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 15/160 (9%) Query: 1 MVKKPLVIFPDPILRRVSR----PIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQ 51 M +V DP L + +R P+E ++ +++ + ++ + + G+G+AA Q Sbjct: 373 MAAAGIVQVGDPSLHQPARSFELPVEAEDARRVVAELSSAMERVSALHTFGKGMGIAAPQ 432 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IG+ ++ D + + +NP++I + EGCLS D R V RS + Sbjct: 433 IGINRAAAIVRSAD----GDILTLLNPRVIESVPESDEQYEGCLSFFDVRGIVPRSLELH 488 Query: 112 VRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHL 150 V + D + + I +Y GL A + HE+DHL+G L+ D + Sbjct: 489 VEHTDTSGRRHITVYRQGL-ARLVAHEIDHLHGRLYTDRM 527 >gi|261367618|ref|ZP_05980501.1| peptide deformylase [Subdoligranulum variabile DSM 15176] gi|282570406|gb|EFB75941.1| peptide deformylase [Subdoligranulum variabile DSM 15176] Length = 136 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 9/114 (7%) Query: 34 NMLEVM-YSTDG-IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ 91 ++LE + Y DG +G+AA IGV R++ D + V NP+I+ S + + Sbjct: 29 DLLETLEYHKDGCVGMAANMIGVNKRIIAFDNEGKYQ-----VMFNPEILRRSGPYEA-E 82 Query: 92 EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 EGCLS+ R VKR I V++ + Q +I G A +QHE+DH GI+ Sbjct: 83 EGCLSLTGVRP-VKRWKTIKVQWQNEKFQQRIKNFTGWTAEIIQHEIDHCEGII 135 >gi|306832702|ref|ZP_07465839.1| peptide deformylase [Streptococcus bovis ATCC 700338] gi|304425158|gb|EFM28287.1| peptide deformylase [Streptococcus bovis ATCC 700338] Length = 204 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 12/138 (8%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--D 85 E M G+GLAA Q+ + R++ + + + + NP V NPK++ S D Sbjct: 63 EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDKDGNPPKDAYSLQEVMYNPKVVAHSVQD 122 Query: 86 DFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 EGCLS+ V R + +TV Y D N + I G + +QHE+DH NGI Sbjct: 123 AALADGEGCLSVDRVVEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGI 182 Query: 145 LFIDHLSRLKRDMITKKM 162 +F D + I K M Sbjct: 183 MFYDRIDEKNPFAIKKGM 200 >gi|34580961|ref|ZP_00142441.1| polypeptide deformylase [Rickettsia sibirica 246] gi|28262346|gb|EAA25850.1| polypeptide deformylase [Rickettsia sibirica 246] Length = 224 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95 GLAA QIG+ +++ + + A K ++INP D EGC Sbjct: 84 GLAAPQIGISKCIIIFAVHEDAELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCF 143 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 S+ + V R I D N A+G LA +QHE+DHLNG +F+D+++ K Sbjct: 144 SVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKK 202 >gi|15892003|ref|NP_359717.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] gi|157827954|ref|YP_001494196.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932642|ref|YP_001649431.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|238650519|ref|YP_002916371.1| peptide deformylase [Rickettsia peacockii str. Rustic] gi|15619118|gb|AAL02618.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] gi|157800435|gb|ABV75688.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907729|gb|ABY72025.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|238624617|gb|ACR47323.1| peptide deformylase [Rickettsia peacockii str. Rustic] Length = 224 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95 GLAA QIG+ +++ + + A K ++INP D EGC Sbjct: 84 GLAAPQIGISKCIIIFAVHEDAELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCF 143 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 S+ + V R I D N A+G LA +QHE+DHLNG +F+D+++ K Sbjct: 144 SVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKK 202 >gi|309803948|ref|ZP_07698031.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d] gi|308163950|gb|EFO66214.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d] Length = 184 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56 +LR+V + + +N L ++M++ + ++ G+GLAA Q+G + Sbjct: 14 VLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQMA 73 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113 L+V D Q + K F+NPKII+ S + EG CLS+ D + V R+ + ++ Sbjct: 74 ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + + I G A HE+DHLNG LF D + + Sbjct: 132 YQTVDGEQRQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|315613522|ref|ZP_07888429.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] gi|315314213|gb|EFU62258.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] Length = 136 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ +L PMV NP +++ + +EGCLS+ R Sbjct: 42 VGLAANMIGVQKRVIIFNLG-----LVPMVMFNPILLSNKGPYET-EEGCLSLTGVRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 R ITV Y D Q I G A QHELDHL G Sbjct: 95 TRYETITVSYRDSKWQELTITLTGFPAQICQHELDHLEG 133 >gi|319946246|ref|ZP_08020486.1| peptide deformylase [Streptococcus australis ATCC 700641] gi|319747628|gb|EFV99881.1| peptide deformylase [Streptococcus australis ATCC 700641] Length = 204 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 18/132 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84 M E + G+GLAA Q+ + R++ + + + NP V NPKI++ S Sbjct: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNPEDEEGNPPKEAYSIQEVMYNPKIVSHSV 120 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y D + I G + +QHE+D Sbjct: 121 QDAALGDGEGCLSVDRNVPGY---VVRHARVTVDYYDKTGEKHRIKLKGYNSIVVQHEID 177 Query: 140 HLNGILFIDHLS 151 H+NG++F D ++ Sbjct: 178 HINGVMFYDRIN 189 >gi|255525142|ref|ZP_05392086.1| formylmethionine deformylase [Clostridium carboxidivorans P7] gi|296188109|ref|ZP_06856501.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255511196|gb|EET87492.1| formylmethionine deformylase [Clostridium carboxidivorans P7] gi|296047235|gb|EFG86677.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 136 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 12/139 (8%) Query: 12 PILRRV---SRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDH 66 PI++ V + EK D M ++D++++ + + + +GLA IGV R++V + Sbjct: 4 PIVKDVLFLGQKSEKATKDDMAVVDDLMDTLKANLQNCVGLAGNMIGVKKRILVFTV--- 60 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 A+ PM INP I+ + +E CLS+ R KR I V Y+D N + Q Sbjct: 61 ANLIVPM--INPVILKKEKPYET-EESCLSLIGVRK-TKRYEMIEVEYLDRNFKSQKQVF 116 Query: 127 DGLLATCLQHELDHLNGIL 145 G A +QHE+DH GI+ Sbjct: 117 TGFTAQIIQHEMDHFEGII 135 >gi|26554017|ref|NP_757951.1| peptide deformylase [Mycoplasma penetrans HF-2] gi|32363151|sp|Q8EVJ8|DEF_MYCPE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|26454025|dbj|BAC44355.1| polypeptide deformylase [Mycoplasma penetrans HF-2] Length = 186 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 5/113 (4%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DY 100 GIG+AA+Q+G +++ I L D + ++ + NPKII S + EGCLS+ D+ Sbjct: 62 GIGIAAIQLGCPKKIIYIHLDD-KNGEHKYLMANPKIIKESTSKMYLKNGEGCLSVKKDH 120 Query: 101 RADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 + R + + V+ +D +I + A LLA C QHE+DH N + + ++ Sbjct: 121 KGLSIRKSIVWVKGIDLFTNKEIEVKATDLLAACFQHEVDHNNNKFYYNRINE 173 >gi|161507335|ref|YP_001577289.1| peptide deformylase [Lactobacillus helveticus DPC 4571] gi|172048229|sp|A8YUR0|DEF_LACH4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|160348324|gb|ABX26998.1| Peptide deformylase [Lactobacillus helveticus DPC 4571] gi|328468535|gb|EGF39537.1| peptide deformylase [Lactobacillus helveticus MTCC 5463] Length = 184 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 28/173 (16%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 DP+LR+V++P+ SD L ++M+E + ++ G+GLAA Q+G + Sbjct: 12 DPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71 Query: 58 LVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFI 110 + + + D K ++F +NP+I++ S + EG CLS+ V R + Sbjct: 72 MAALLVPDD---KGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPRPDKL 128 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 T+ Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 129 TIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKEDTV 181 >gi|22538033|ref|NP_688884.1| peptide deformylase [Streptococcus agalactiae 2603V/R] gi|25011922|ref|NP_736317.1| peptide deformylase [Streptococcus agalactiae NEM316] gi|76788216|ref|YP_330458.1| peptide deformylase [Streptococcus agalactiae A909] gi|76797863|ref|ZP_00780126.1| peptide deformylase [Streptococcus agalactiae 18RS21] gi|77405647|ref|ZP_00782735.1| polypeptide deformylase [Streptococcus agalactiae H36B] gi|77408421|ref|ZP_00785160.1| polypeptide deformylase [Streptococcus agalactiae COH1] gi|77411534|ref|ZP_00787877.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|77414207|ref|ZP_00790370.1| polypeptide deformylase [Streptococcus agalactiae 515] gi|39930892|sp|Q8DXF6|DEF_STRA5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|39930894|sp|Q8E378|DEF_STRA3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123601213|sp|Q3JZ45|DEF_STRA1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22534936|gb|AAN00757.1|AE014277_5 polypeptide deformylase [Streptococcus agalactiae 2603V/R] gi|24413464|emb|CAD47542.1| Unknown [Streptococcus agalactiae NEM316] gi|76563273|gb|ABA45857.1| peptide deformylase [Streptococcus agalactiae A909] gi|76586766|gb|EAO63261.1| peptide deformylase [Streptococcus agalactiae 18RS21] gi|77159733|gb|EAO70881.1| polypeptide deformylase [Streptococcus agalactiae 515] gi|77162388|gb|EAO73356.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|77172944|gb|EAO76074.1| polypeptide deformylase [Streptococcus agalactiae COH1] gi|77175720|gb|EAO78501.1| polypeptide deformylase [Streptococcus agalactiae H36B] Length = 204 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%) Query: 11 DPILRRVSRPI--------EKINSDIMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57 +P LR+V+ + E + +M + + M E + G+GLAA Q+ + R Sbjct: 24 NPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKR 83 Query: 58 LVVI---DLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDY 100 ++ + +++D + NP V NPK+++ S D EGCLS+ P Y Sbjct: 84 IIAVLVPNVEDA--QGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY 141 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +T+ Y D + + G + +QHE+DH++GI+F D ++ Sbjct: 142 ---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190 >gi|300173110|ref|YP_003772276.1| peptide deformylase [Leuconostoc gasicomitatum LMG 18811] gi|299887489|emb|CBL91457.1| Peptide deformylase [Leuconostoc gasicomitatum LMG 18811] Length = 192 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 55/116 (47%), Gaps = 9/116 (7%) Query: 44 GIGLAAVQIGVLYRLVVI---DLQDHAHRKNPM---VFINPKIITFSDDFSVYQ--EGCL 95 G+GLAA Q+ R+ I L H + P NP II+ S EGCL Sbjct: 61 GVGLAAPQVNYSLRMASILVPSLDPHESDETPYFKGTIFNPTIISESIKRGALDVGEGCL 120 Query: 96 SI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 S+ D V R+ ITVRY D +II A QHE+DHL+G L+ DH+ Sbjct: 121 SVDKDVPGFVPRADRITVRYQDETGATKIIKLRDYPAIVFQHEIDHLHGHLYYDHI 176 >gi|22537481|ref|NP_688332.1| peptide deformylase [Streptococcus agalactiae 2603V/R] gi|22534360|gb|AAN00205.1|AE014253_3 polypeptide deformylase, putative [Streptococcus agalactiae 2603V/R] Length = 136 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 29 MNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 ++L ++ E +++ +G+AA IG L R+++I++ +V NP ++ SD Sbjct: 24 VSLAKDLQETLHANQNYCVGMAANMIGSLKRVIIINV-----GITNLVMFNPVVVAKSDP 78 Query: 87 FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 + +E CLS+ R+ +R IT+ Y D N + Q I A QHELDHL GIL Sbjct: 79 YET-EESCLSLVGCRS-TQRYCHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGIL 135 >gi|319745793|gb|EFV98087.1| peptide deformylase [Streptococcus agalactiae ATCC 13813] Length = 204 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%) Query: 11 DPILRRVSRPI--------EKINSDIMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57 +P LR+V+ + E + +M + + M E + G+GLAA Q+ + R Sbjct: 24 NPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKR 83 Query: 58 LVVI---DLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDY 100 ++ + +++D + NP V NPK+++ S D EGCLS+ P Y Sbjct: 84 IIAVLVPNVEDA--QGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY 141 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +T+ Y D + + G + +QHE+DH++GI+F D ++ Sbjct: 142 ---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190 >gi|309807903|ref|ZP_07701833.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a] gi|308168852|gb|EFO70940.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a] Length = 184 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56 +LR+V + + +N L ++M++ + ++ G+GLAA Q+G + Sbjct: 14 VLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQVA 73 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113 L+V D Q + K F+NPKII+ S + EG CLS+ D + V R+ + ++ Sbjct: 74 ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 131 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + + I G A HE+DHLNG LF D + + Sbjct: 132 YQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|325663348|ref|ZP_08151798.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] gi|325470802|gb|EGC74032.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] Length = 136 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++++++ +V NP ++ + +EGCLS+ R Sbjct: 42 VGMAANMIGVKKRVIIVNMGFV-----DVVMFNPVLVRKESPYET-EEGCLSLTGVRK-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y+D N + Q + DG A QHELDHL GIL Sbjct: 95 TRYQTIEVEYLDMNWKKQNLKLDGWTAQICQHELDHLEGIL 135 >gi|160943037|ref|ZP_02090275.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii M21/2] gi|158445731|gb|EDP22734.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii M21/2] Length = 136 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 11/140 (7%) Query: 8 IFPDPI-LRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 I DP+ L + S P ++ + +L+D + ++ +G+AA IGV R++ ++ +D Sbjct: 5 IMHDPLFLAQKSAPATPEDAPVARDLLDTL--TAHADGCVGMAANMIGVRKRIIAVEAED 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V NP I+ S + +EGCLS+ R KR I V+Y + + +I Sbjct: 63 -----GYLVLFNPVILKKSGQYEA-EEGCLSLEGVR-KTKRWQSIKVQYQTMDGKLRIKT 115 Query: 126 ADGLLATCLQHELDHLNGIL 145 G A +QHE+DH +GIL Sbjct: 116 FTGWTAQIIQHEIDHCDGIL 135 >gi|291320109|ref|YP_003515367.1| formylmethionine deformylase [Mycoplasma agalactiae] gi|290752438|emb|CBH40409.1| Formylmethionine deformylase [Mycoplasma agalactiae] Length = 187 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 20/165 (12%) Query: 6 LVIFPDPILRR---------VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 LV P +LR+ S IE + I ++ D+ + G+G+AAVQ G+L Sbjct: 8 LVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAAVQYGILK 67 Query: 57 RLVVIDL-QDHAHRKNPM---VFINPKIITFSDD-FSVYQ-EGCLS----IPDYRADVKR 106 R+ I++ +D K+ + VF NP II S+ ++ Q EGCLS IP+ V R Sbjct: 68 RVFYINITEDMVDDKSQILRDVFFNPTIIAMSNSKIALSQGEGCLSVRRNIPNQSGLVYR 127 Query: 107 SAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 I + Y + + G A QHELDHL G LFID + Sbjct: 128 HKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRI 172 >gi|328770364|gb|EGF80406.1| hypothetical protein BATDEDRAFT_88570 [Batrachochytrium dendrobatidis JAM81] Length = 198 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%) Query: 45 IGLAAVQIG-----VLYRLVVIDLQDHAHRKNPMV---FINPKIITF----SDDFSVYQE 92 +GLAA QI + Y++ L + P+ +NP + S + E Sbjct: 62 LGLAAAQISHPVQLIAYQITDTQLIKEKNLPGPVARTFIVNPVMTILDKLPSAKWKAEYE 121 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 C SIP+Y V+R+ + V + + A G+LA +QHE+DH+ GILFID + R Sbjct: 122 FCESIPNYSGLVRRADHVHVTGFGLDGNSITVNAKGILARIIQHEMDHMEGILFIDKMER 181 >gi|227511983|ref|ZP_03942032.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] gi|227084791|gb|EEI20103.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] Length = 136 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 11/119 (9%) Query: 31 LIDNMLEVMYSTDGI--GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88 +I ++L+ +++ I G+AA IGV R++V+ + P+ +NP+I+ S F+ Sbjct: 26 IITDLLDTLHANTQICVGMAANMIGVNKRIIVVQM-----GMLPVALVNPEIVEKSVPFA 80 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYADGLLATCLQHELDHLNGILF 146 +EGCLS+ R+ R ITV Y+D N + H+ ++D +A +QHE+DH GIL Sbjct: 81 T-KEGCLSLEGQRS-TTRYKEITVTYLDQNLRSHRQGFSD-WIAQIIQHEVDHCEGILI 136 >gi|268608180|ref|ZP_06141907.1| peptide deformylase [Ruminococcus flavefaciens FD-1] Length = 137 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 12/139 (8%) Query: 8 IFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQ 64 I DP +L R S P K + M+ + ++L+ + + +G+AA IGV ++V + Sbjct: 5 IVRDPLVLGRKSEPAGKED---MHTVRDLLDTLAANSDRCVGMAANMIGVHKTILVAAVG 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A + INPKI S D +EGCLS+ R V+R FITV Y+D + + Sbjct: 62 GKA-----VAMINPKITDKSKDTYDTEEGCLSLDGVRP-VQRYKFITVEYLDHRFKKKKQ 115 Query: 125 YADGLLATCLQHELDHLNG 143 A +QHE+DH +G Sbjct: 116 TFRDFEAQIIQHEIDHFSG 134 >gi|315226122|ref|ZP_07867910.1| peptide deformylase [Parascardovia denticolens DSM 10105] gi|315120254|gb|EFT83386.1| peptide deformylase [Parascardovia denticolens DSM 10105] Length = 244 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 31/173 (17%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDN-MLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR + P + ++ + ++L+ M + M + G+GLA QIG+ + V+ Sbjct: 40 PIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVV- 98 Query: 63 LQDH-----AHRKNPM----------------------VFINPKIITFSDDFSVYQEGCL 95 +DH + +P + INP D+ + + EGCL Sbjct: 99 -EDHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCL 157 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 S Y+A KR I + D A QHE DHL+G ++ID Sbjct: 158 SFDGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYID 210 >gi|294786544|ref|ZP_06751798.1| peptide deformylase [Parascardovia denticolens F0305] gi|294485377|gb|EFG33011.1| peptide deformylase [Parascardovia denticolens F0305] Length = 234 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 31/173 (17%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDN-MLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR + P + ++ + ++L+ M + M + G+GLA QIG+ + V+ Sbjct: 30 PIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVV- 88 Query: 63 LQDH-----AHRKNPM----------------------VFINPKIITFSDDFSVYQEGCL 95 +DH + +P + INP D+ + + EGCL Sbjct: 89 -EDHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCL 147 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 S Y+A KR I + D A QHE DHL+G ++ID Sbjct: 148 SFDGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYID 200 >gi|107025411|ref|YP_622922.1| aminotransferase, class IV [Burkholderia cenocepacia AU 1054] gi|105894785|gb|ABF77949.1| branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase [Burkholderia cenocepacia AU 1054] Length = 496 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 12/145 (8%) Query: 14 LRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQDHA 67 LR V+RP++ + + + + + L G G +AA QIG+ R++ + L Sbjct: 13 LRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGIGQRMIALALDGW- 71 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYA 126 P V +NP+I+ SD + C+ PD V+R A ++VRY + + HQ Sbjct: 72 ----PDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRYTTLDGEPHQRDAL 127 Query: 127 DGLLATCLQHELDHLNGILFIDHLS 151 ++ +QHE+DHL+G L D + Sbjct: 128 SPDVSELMQHEIDHLDGKLSFDRAT 152 >gi|228476502|ref|ZP_04061192.1| peptide deformylase [Streptococcus salivarius SK126] gi|228251923|gb|EEK10969.1| peptide deformylase [Streptococcus salivarius SK126] Length = 204 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 18/131 (13%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--D 85 E M G+GLAA Q+ + R++ + + + NP + NPK++ S D Sbjct: 63 EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQD 122 Query: 86 DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 EGCLS+ P Y V R A +TV Y + + Q + G + +QHE+DH Sbjct: 123 AALGDGEGCLSVDRDVPGY---VVRHARVTVEYFNKEGEKQRVKLRGYNSIVVQHEIDHT 179 Query: 142 NGILFIDHLSR 152 NGI+F D +++ Sbjct: 180 NGIMFYDRINK 190 >gi|184155075|ref|YP_001843415.1| peptide deformylase [Lactobacillus fermentum IFO 3956] gi|260663619|ref|ZP_05864508.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] gi|238692958|sp|B2GBA3|DEF_LACF3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|183226419|dbj|BAG26935.1| formylmethionine deformylase [Lactobacillus fermentum IFO 3956] gi|260551845|gb|EEX24960.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] Length = 189 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 7/116 (6%) Query: 44 GIGLAAVQIGVLYRLVVIDL-QDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI 97 G+GLAA Q+ V ++ + + D P+ V INP II+ S EG CLS+ Sbjct: 60 GVGLAAPQVNVSKQMAAVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSV 119 Query: 98 P-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D V R IT++Y D + + A QHE+DHL+G+LF DH+++ Sbjct: 120 DRDIAGYVPRHDRITLKYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175 >gi|157964118|ref|YP_001498942.1| polypeptide deformylase [Rickettsia massiliae MTU5] gi|157843894|gb|ABV84395.1| Polypeptide deformylase [Rickettsia massiliae MTU5] Length = 232 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95 GLAA QIG+ +++ + + A K ++INP D EGC Sbjct: 92 GLAAPQIGISKCIIIFAVHEDAELKKWRPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCF 151 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 S+ + V R I D N A+G LA +QHE+DHLNG +F+D+++ K Sbjct: 152 SVENAIGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPQK 210 >gi|170737315|ref|YP_001778575.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3] gi|169819503|gb|ACA94085.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3] Length = 496 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 12/145 (8%) Query: 14 LRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQDHA 67 LR V+RP++ + + + + + L G G +AA QIG+ R++ + L Sbjct: 13 LRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGIGQRMIALALDGW- 71 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYA 126 P V +NP+I+ SD + C+ PD V+R A ++VRY + + HQ Sbjct: 72 ----PDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRYTTLDGEPHQRDAL 127 Query: 127 DGLLATCLQHELDHLNGILFIDHLS 151 ++ +QHE+DHL+G L D + Sbjct: 128 SPDVSELMQHEIDHLDGKLSFDRAA 152 >gi|325688025|gb|EGD30044.1| peptide deformylase [Streptococcus sanguinis SK72] gi|327469220|gb|EGF14692.1| peptide deformylase [Streptococcus sanguinis SK330] Length = 136 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 9/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 12 LQQPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVV 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP + + S + +E CLS+ R +R IT+ Y+D + Q Q + GL A Sbjct: 67 MFNPVLRSKSGPYQT-EESCLSLVGSRP-TQRYQEITIDYLDKHWQQQTMTLKGLPAQIC 124 Query: 135 QHELDHLNGIL 145 QHELDHL GI+ Sbjct: 125 QHELDHLEGII 135 >gi|229823199|ref|ZP_04449268.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271] gi|229787365|gb|EEP23479.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271] Length = 185 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 9/118 (7%) Query: 44 GIGLAAVQIGV---LYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQ--EGCL 95 G+GLAA QI + ++ + ++ + + P+ + NPKII+ S + EGCL Sbjct: 55 GVGLAAPQINLPKQIFAVHIMSYDEEGNEAEPLLSEILFNPKIISHSVQEVALRDGEGCL 114 Query: 96 SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 S+ + V R I +RY D + + A +QHELDHL GI+F DH+++ Sbjct: 115 SVNREVPGLVPRPRRIRLRYQDMEGKEHELRLRDYEAIVVQHELDHLKGIMFYDHINQ 172 >gi|171742883|ref|ZP_02918690.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC 27678] gi|171278497|gb|EDT46158.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC 27678] Length = 134 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 28 IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87 + +L+ ++L+ + GL+A QIGV R ++ + ++ ++ + Sbjct: 1 MRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNID------GKIGYVLNPVLEETSGE 54 Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 EGCLS+P +R+ + VR +D + ++ G++ LQHE DHL+G +++ Sbjct: 55 QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHGIMGRMLQHETDHLDGHVYL 114 Query: 148 DHLSRLKRDMITKKMSKLVQ 167 D L + +R + M Q Sbjct: 115 DRLEKEERREAMRYMRNHRQ 134 >gi|332363811|gb|EGJ41590.1| peptide deformylase [Streptococcus sanguinis SK355] gi|332365740|gb|EGJ43498.1| peptide deformylase [Streptococcus sanguinis SK1059] Length = 136 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 9/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 12 LQQPSEQASREDLYLAQDLQDTLQANQENCIGLAANMIGVRKRVIIF-----LYGLVPVV 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP + + S + +E CLS+ R +R IT+ Y+D + Q Q + GL A Sbjct: 67 MFNPVLRSKSGPYQT-EESCLSLVGSRP-TQRYQEITIDYLDKHWQQQTMTLKGLPAQIC 124 Query: 135 QHELDHLNGIL 145 QHELDHL GI+ Sbjct: 125 QHELDHLEGII 135 >gi|270291431|ref|ZP_06197653.1| polypeptide deformylase [Pediococcus acidilactici 7_4] gi|304385144|ref|ZP_07367490.1| peptide deformylase [Pediococcus acidilactici DSM 20284] gi|270280277|gb|EFA26113.1| polypeptide deformylase [Pediococcus acidilactici 7_4] gi|304329338|gb|EFL96558.1| peptide deformylase [Pediococcus acidilactici DSM 20284] Length = 184 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 29/165 (17%) Query: 11 DPILR-RVSRPIEKINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 +P+LR R + ++ + + D M+E + ++ G+GLAA QIG+ + Sbjct: 12 NPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPKIAQKYHLRAGVGLAAPQIGLSIQ 71 Query: 58 LVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSI----PDYRADVKRS 107 + + + + ++F +NP I++ S + EG CLS+ P Y V R Sbjct: 72 MASVLV---PGPDDEIIFEETLVNPVIVSQSVQVAALDEGEGCLSVDKEVPGY---VPRY 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT+RY + + + I A QHE+DHL G LF DH+++ Sbjct: 126 DRITIRYQNVEGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINK 170 >gi|227893361|ref|ZP_04011166.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] gi|227864776|gb|EEJ72197.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] Length = 184 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 26/172 (15%) Query: 11 DPILRRVSRPI--------EKINSDIMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57 DP+LR+V++P+ +K+ D+M + N + E G+GLAA Q+G + Sbjct: 12 DPVLRQVAKPLTFPLSDHYKKLAKDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQ 71 Query: 58 LVVIDLQDHAHR---KNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111 + + + D + K ++NP+II+ S + EG CLS+ V R +T Sbjct: 72 MAALLVPDDEGKIIFKE--TYVNPEIISESVRQACLSEGEGCLSVDKVINGYVPRPDKLT 129 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 + Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKDPYSLKEDTV 181 >gi|319939890|ref|ZP_08014245.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] gi|319810901|gb|EFW07220.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] Length = 204 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 18/131 (13%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS--D 85 E M G+GLAA Q+ + R++ + + + ++ NP V N KI+ S D Sbjct: 63 EKMGLRGGVGLAAPQLDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKIVAHSVQD 122 Query: 86 DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 EGCLS+ P Y V R A +TV Y D + I G + +QHE+DH Sbjct: 123 AALAEGEGCLSVDREVPGY---VVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEIDHT 179 Query: 142 NGILFIDHLSR 152 NGI+F D ++ Sbjct: 180 NGIMFYDRINE 190 >gi|148377446|ref|YP_001256322.1| formylmethionine deformylase [Mycoplasma agalactiae PG2] gi|148291492|emb|CAL58878.1| Formylmethionine deformylase [Mycoplasma agalactiae PG2] Length = 187 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 20/165 (12%) Query: 6 LVIFPDPILRR---------VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 LV P +LR+ S IE + I ++ D+ + G+G+AAVQ G+L Sbjct: 8 LVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAAVQYGILK 67 Query: 57 RLVVIDL-QDHAHRKNPM---VFINPKIITFSDD-FSVYQ-EGCLS----IPDYRADVKR 106 R+ I++ +D K + VF NP II S+ ++ Q EGCLS IP+ V R Sbjct: 68 RVFYINITEDMVDDKKQVLRDVFFNPTIIAMSNSKIALSQGEGCLSVGRNIPNQSGLVYR 127 Query: 107 SAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 I + Y + + G A QHELDHL G LFID + Sbjct: 128 HKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRI 172 >gi|227509076|ref|ZP_03939125.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191463|gb|EEI71530.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 136 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 14/136 (10%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + ++P +S I I ++L+ + + I G+AA IGV R++V+ + Sbjct: 12 LSQRAQPATSADSQI---ITDLLDTLRANTQICVGMAANMIGVNKRIIVVQM-----GML 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQHQIIYADGLL 130 P+ +NP+I+ S F+ +EGCLS+ R+ R ITV Y+D N H+ ++D + Sbjct: 64 PVALVNPEIVEKSVPFAT-KEGCLSLEGQRS-TTRYKEITVTYLDQNFRSHRQGFSD-WI 120 Query: 131 ATCLQHELDHLNGILF 146 A +QHE+DH GIL Sbjct: 121 AQIIQHEVDHCEGILI 136 >gi|312863990|ref|ZP_07724226.1| peptide deformylase [Streptococcus vestibularis F0396] gi|322517594|ref|ZP_08070462.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] gi|311100403|gb|EFQ58610.1| peptide deformylase [Streptococcus vestibularis F0396] gi|322123759|gb|EFX95337.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] Length = 204 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 18/131 (13%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--D 85 E M G+GLAA Q+ + R++ + + + NP + NPK++ S D Sbjct: 63 EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQD 122 Query: 86 DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 EGCLS+ P Y V R A +TV Y + + Q + G + +QHE+DH Sbjct: 123 AALGDGEGCLSVDRDVPGY---VVRHARVTVEYYNKEGEKQRVKLRGYNSIVVQHEIDHT 179 Query: 142 NGILFIDHLSR 152 NGI+F D +++ Sbjct: 180 NGIMFYDRINK 190 >gi|55820249|ref|YP_138691.1| peptide deformylase [Streptococcus thermophilus LMG 18311] gi|55822139|ref|YP_140580.1| peptide deformylase [Streptococcus thermophilus CNRZ1066] gi|116627103|ref|YP_819722.1| peptide deformylase [Streptococcus thermophilus LMD-9] gi|81676625|sp|Q5M1R9|DEF_STRT1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81676774|sp|Q5M6B0|DEF_STRT2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122268294|sp|Q03MP6|DEF_STRTD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|55736234|gb|AAV59876.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311] gi|55738124|gb|AAV61765.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066] gi|116100380|gb|ABJ65526.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus LMD-9] gi|312277572|gb|ADQ62229.1| Peptide deformylase [Streptococcus thermophilus ND03] Length = 204 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 18/131 (13%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFSDDF 87 E M G+GLAA Q+ + R++ + + + K NP + NPK++ S Sbjct: 63 EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDAKGNPPKEAYSLQEIMYNPKVVAHSVQE 122 Query: 88 SVYQ--EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 + EGCLS+ P Y V R A +T+ Y + + + I G + +QHE+DH Sbjct: 123 AALGNGEGCLSVDRDVPGY---VVRHARVTIEYFNKEGEKKRIKLRGYDSIVVQHEIDHT 179 Query: 142 NGILFIDHLSR 152 NGI+F D +++ Sbjct: 180 NGIMFYDRINK 190 >gi|170017441|ref|YP_001728360.1| peptide deformylase [Leuconostoc citreum KM20] gi|169804298|gb|ACA82916.1| peptide deformylase [Leuconostoc citreum KM20] Length = 195 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 31/169 (18%) Query: 11 DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTD-----------GIGLAAVQIGVL 55 DP+LR+VS P+ + ++ + D M ++ S D G+GLAA Q+G Sbjct: 15 DPVLRQVSTAVPFPLSEEHAQLAQ--DMMTYLVVSQDEEENEKYGLRPGVGLAAPQVGYS 72 Query: 56 YRLVVI----------DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI-PDYRA 102 ++ I D QD +F NP II+ S S EGCLS+ D Sbjct: 73 LQMTSILIPALETHEQDEQDDKPYFKGTIF-NPVIISESVKRSALNVGEGCLSVDEDVPG 131 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R+ ITVRY D + + A QHE+DHL+G L+ DH++ Sbjct: 132 FVPRANRITVRYQDETGATKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 180 >gi|288904432|ref|YP_003429653.1| polypeptide deformylase [Streptococcus gallolyticus UCN34] gi|306830465|ref|ZP_07463635.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977428|ref|YP_004287144.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731157|emb|CBI12705.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34] gi|304427490|gb|EFM30592.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177356|emb|CBZ47400.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 204 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 12/126 (9%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--D 85 E M G+GLAA Q+ + R++ + + + + NP V NPK++ S D Sbjct: 63 EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDKDGNPPKEAYSLQEVMYNPKVVAHSVQD 122 Query: 86 DFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 EGCLS+ V R + +TV Y D N + I G + +QHE+DH NGI Sbjct: 123 AALADGEGCLSVDRVVEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGI 182 Query: 145 LFIDHL 150 +F D + Sbjct: 183 MFYDRI 188 >gi|326692674|ref|ZP_08229679.1| peptide deformylase [Leuconostoc argentinum KCTC 3773] Length = 192 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 22/163 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMY-STD-----------GIGLAAVQIGVLYR 57 +P+LR+V+ + ++ + L ++M+ + S D G+GLAA Q+G + Sbjct: 15 EPVLRQVAEKVPFPLSEEHAQLAEDMMTYLVISQDEEQNEKYGLRPGVGLAAPQVGESLQ 74 Query: 58 L--VVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSA 108 + V+I QD R F NP II+ S + EGCLS+ D V R+ Sbjct: 75 MAAVLIPSQDPHERDAEPYFKGTIFNPVIISESVKRAALDVGEGCLSVDEDVPGFVPRAN 134 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITVRY + + + + A QHE+DHL+G L+ DH++ Sbjct: 135 RITVRYQNEQGETKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 177 >gi|313890594|ref|ZP_07824222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] gi|313121111|gb|EFR44222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] Length = 136 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%) Query: 8 IFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 I DP L+++S+ K + I + + L + +GLAA IG R+++I + Sbjct: 5 IVKDPFFLQQISKQATKEDLPIGKDLQDTLS-FHREHCLGLAANMIGESKRVIIISM--- 60 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 ++ NPK++ ++ + V +E CLS+ + +R ITV Y+D N + + + Sbjct: 61 --GFVDILMFNPKLVKKTNPY-VTEESCLSLSGNQK-TQRYQKITVEYLDLNWRKKSLSL 116 Query: 127 DGLLATCLQHELDHLNGIL 145 +GL A QHELDHL+GIL Sbjct: 117 NGLAAQICQHELDHLDGIL 135 >gi|19745939|ref|NP_607075.1| peptide deformylase [Streptococcus pyogenes MGAS8232] gi|19748096|gb|AAL97574.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232] Length = 136 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 7/108 (6%) Query: 38 VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97 V Y + +G+AA IG R+V++ + +V NP +++ + +E CLS+ Sbjct: 35 VFYRQECLGMAANMIGEQKRIVIVSMG-----FIDLVMFNPVMVSKKGIYQT-KESCLSL 88 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 YR +R ITV Y+D N + + + GL A QHELDHL GIL Sbjct: 89 SGYRK-TQRYDKITVEYLDHNWRPKRLSLTGLTAQICQHELDHLEGIL 135 >gi|227514799|ref|ZP_03944848.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] gi|227086847|gb|EEI22159.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] Length = 189 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 7/116 (6%) Query: 44 GIGLAAVQIGVLYRLVVIDL-QDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI 97 G+GLAA Q+ + ++ + + D P+ V INP II+ S EG CLS+ Sbjct: 60 GVGLAAPQVNISKQMAAVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSV 119 Query: 98 P-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D V R IT++Y D + + A QHE+DHL+G+LF DH+++ Sbjct: 120 DRDIAGYVPRHDRITLKYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175 >gi|329116594|ref|ZP_08245311.1| peptide deformylase [Streptococcus parauberis NCFD 2020] gi|326906999|gb|EGE53913.1| peptide deformylase [Streptococcus parauberis NCFD 2020] Length = 136 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 IGLAA IG +++I + +V NP+II SD + +E CLS+ + Sbjct: 42 IGLAANMIGEKKAVIIISMG-----FVDLVMFNPQIIKQSDVYQT-EESCLSLTGSKP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR ITVRY+D N + + + GL A QHE+DHL G L Sbjct: 95 KRFETITVRYLDMNWREKNLTLTGLPAQICQHEMDHLEGKL 135 >gi|25011446|ref|NP_735841.1| peptide deformylase [Streptococcus agalactiae NEM316] gi|77411175|ref|ZP_00787527.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|24412984|emb|CAD47063.1| unknown [Streptococcus agalactiae NEM316] gi|77162793|gb|EAO73752.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|319745273|gb|EFV97591.1| peptide deformylase [Streptococcus agalactiae ATCC 13813] Length = 136 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IG L R+++I++ +V NP ++ SD + +E CLS+ R+ Sbjct: 42 VGMAANMIGSLKRVIIINVG-----ITNLVMFNPVLVAKSDPYET-EESCLSLVGCRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R IT+ Y D N + Q I A QHELDHL GIL Sbjct: 95 QRYRHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGIL 135 >gi|225405389|ref|ZP_03760578.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme DSM 15981] gi|225043091|gb|EEG53337.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme DSM 15981] Length = 160 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 16/150 (10%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIM-----NLIDNMLEV--MYSTDGIGLAAVQIGVLY 56 K +++ +P L +S + + M +L D M+E +Y G +AA QIGV Sbjct: 3 KEILLLGNPALYEISEAVREEELTEMAALERDLHDTMMEFRRIYKA-GRAIAAPQIGVKK 61 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R++ +++ + P++ INP ++ F D + + C+S P V R + Y Sbjct: 62 RVLYMNVGE------PVLLINP-VLEFPDGEMMEVMDDCMSFPGLLVKVDRYRRCRIHYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145 D N Q + + +G L+ LQHE DHL+GIL Sbjct: 115 DRNWQDEEMELEGDLSELLQHEYDHLDGIL 144 >gi|320547748|ref|ZP_08042032.1| peptide deformylase [Streptococcus equinus ATCC 9812] gi|320447508|gb|EFW88267.1| peptide deformylase [Streptococcus equinus ATCC 9812] Length = 204 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 12/126 (9%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--D 85 E M G+GLAA Q+ V R++ + + + + NP V NPK++ S D Sbjct: 63 EKMGLRGGVGLAAPQLNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQD 122 Query: 86 DFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 EGCLS+ V R + +TV Y + N + + G + +QHE+DH NGI Sbjct: 123 AALADGEGCLSVDRVVEGYVVRHSRVTVEYFNKNGEKHRVKLKGYNSIVVQHEIDHTNGI 182 Query: 145 LFIDHL 150 +F D + Sbjct: 183 MFYDRI 188 >gi|76787753|ref|YP_329975.1| peptide deformylase [Streptococcus agalactiae A909] gi|76799363|ref|ZP_00781521.1| polypeptide deformylase [Streptococcus agalactiae 18RS21] gi|77414517|ref|ZP_00790664.1| polypeptide deformylase [Streptococcus agalactiae 515] gi|76562810|gb|ABA45394.1| polypeptide deformylase [Streptococcus agalactiae A909] gi|76585283|gb|EAO61883.1| polypeptide deformylase [Streptococcus agalactiae 18RS21] gi|77159440|gb|EAO70604.1| polypeptide deformylase [Streptococcus agalactiae 515] Length = 136 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IG L R+++I++ +V NP ++ SD + +E CLS+ R+ Sbjct: 42 VGMAANMIGSLKRVIIINV-----GITNLVMFNPVLVAKSDPYET-EESCLSLVGCRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R IT+ Y D N + Q I A QHELDHL GIL Sbjct: 95 QRYHHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGIL 135 >gi|116490852|ref|YP_810396.1| peptide deformylase [Oenococcus oeni PSU-1] gi|290890300|ref|ZP_06553379.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429] gi|116091577|gb|ABJ56731.1| peptide deformylase [Oenococcus oeni PSU-1] gi|290480086|gb|EFD88731.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429] Length = 185 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 21/164 (12%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54 +P+LR ++P+ ++ +I L MLE + + G+GLA Q+ Sbjct: 9 NPVLRAKAKPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQVNKSLQ 68 Query: 55 LYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSAF 109 + L++ L K + NPKI S + + EGCLS D V R+ Sbjct: 69 MTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALETGEGCLSKDEDTPGIVLRADK 128 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV Y D N +H I A QHE+DHL GI++ DH++ L Sbjct: 129 ITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 172 >gi|331083476|ref|ZP_08332588.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|330404169|gb|EGG83717.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 136 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV ++++++ +V NP ++ + +EGCLS+ R Sbjct: 42 VGMAANMIGVKKSVIIVNMGFV-----DVVMFNPVLVRKESPYET-EEGCLSLTGVRKTT 95 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y+D N + Q + DG A QHELDHL GIL Sbjct: 96 -RYQMIEVEYLDMNWKKQKLKLDGWTAQICQHELDHLEGIL 135 >gi|86742919|ref|YP_483319.1| formylmethionine deformylase [Frankia sp. CcI3] gi|86569781|gb|ABD13590.1| formylmethionine deformylase [Frankia sp. CcI3] Length = 549 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 15/150 (10%) Query: 11 DPILRRVSRPI---------EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ILR+ +RP ++ +++ + ++ + + G+G+AA Q+G+ ++ Sbjct: 382 EAILRQPARPFALPNEAEDARRVVAELSSALERVSALHTFGKGLGIAAPQVGINRAAAIV 441 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA-Q 120 + + +NP +I S + EGCLS D R V R + V + D + + Sbjct: 442 ----RTAGGDTLTLLNPSVIETSRETDEQYEGCLSFFDVRGLVPRPLELHVEHTDIDGNR 497 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 H +Y GL A + HE+DHL+G L+ D + Sbjct: 498 HITVYRQGL-ARLVAHEIDHLHGQLYTDRM 526 >gi|262283351|ref|ZP_06061117.1| peptide deformylase [Streptococcus sp. 2_1_36FAA] gi|262260842|gb|EEY79542.1| peptide deformylase [Streptococcus sp. 2_1_36FAA] Length = 136 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R+++ + P++ NP + S + +EGCLS+ R+ Sbjct: 42 VGLAANMIGVKKRVIIF-----MYGMVPIIMFNPVLRAKSGPYQT-EEGCLSLVGSRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R ITV Y+D N Q Q I A QHELDHL GIL Sbjct: 95 TRYQEITVDYLDRNWQPQTITLKDFPAQICQHELDHLEGIL 135 >gi|322411580|gb|EFY02488.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 136 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IG R+++I + +V NP I++ + + +E CLS+ R Sbjct: 42 LGLAANMIGEQKRVIIISMG-----FVDLVMFNPVIVSKREAYET-EESCLSLTGSR-QT 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR ITV Y+D N + + + GL A QHELDHL GIL Sbjct: 95 KRYTSITVEYVDLNWRPKRLRLSGLPAQICQHELDHLEGIL 135 >gi|295099860|emb|CBK88949.1| N-formylmethionyl-tRNA deformylase [Eubacterium cylindroides T2-87] Length = 136 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 8/133 (6%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 IL R+S K + I + + LE + G+AA IG R +I QD Sbjct: 11 ILSRISVLANKDDLSIAQDLIDTLEA-HKVSCAGMAANMIGFHKR--IIAFQDEG---KI 64 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 +V +NP+II S +S +EGCLS+ R + KR I VRY+D + +I A Sbjct: 65 VVMLNPEIIKKSQIYSA-KEGCLSLSGQR-ETKRYRSIKVRYLDMQMKIKIKTFKDFTAQ 122 Query: 133 CLQHELDHLNGIL 145 +QHE+DH +GIL Sbjct: 123 VIQHEIDHCDGIL 135 >gi|158320246|ref|YP_001512753.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs] gi|158140445|gb|ABW18757.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs] Length = 164 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 6/102 (5%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G +AA QIG+ RL+ + P +FINP + D+ + C+S P Sbjct: 49 GRAVAAPQIGIKKRLL------YMFTDQPYIFINPVMSFPEDEKYTLLDDCMSFPGLIVK 102 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 V+R + Y D + Q +Y G L+ LQHE DHL GIL Sbjct: 103 VERYKRAEISYFDKDFNPQKMYLKGDLSELLQHEYDHLEGIL 144 >gi|116630410|ref|YP_819563.1| peptide deformylase [Lactobacillus gasseri ATCC 33323] gi|238852749|ref|ZP_04643155.1| peptide deformylase [Lactobacillus gasseri 202-4] gi|282850746|ref|ZP_06260121.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311111595|ref|ZP_07712992.1| peptide deformylase [Lactobacillus gasseri MV-22] gi|116095992|gb|ABJ61144.1| N-formylmethionyl-tRNA deformylase [Lactobacillus gasseri ATCC 33323] gi|238834599|gb|EEQ26830.1| peptide deformylase [Lactobacillus gasseri 202-4] gi|282558154|gb|EFB63741.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311066749|gb|EFQ47089.1| peptide deformylase [Lactobacillus gasseri MV-22] Length = 137 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 9/101 (8%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 GLAA IGV R++ + + P+V +NP I+ +D + Y EGCLS+ R + Sbjct: 44 GLAANMIGVQKRIIALFVGPL-----PIVMLNPIIVKKADKYLAY-EGCLSLEGERP-TE 96 Query: 106 RSAFITVRYMDCNAQ-HQIIYADGLLATCLQHELDHLNGIL 145 R ITV+Y + N + Q ++D +A +QHE+DH NGIL Sbjct: 97 RYKKITVKYQNENFETRQQAFSD-FVAEVIQHEVDHCNGIL 136 >gi|294669089|ref|ZP_06734175.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309081|gb|EFE50324.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 76 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 38/58 (65%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 +PD L V++P+EKI+ I LI +M + MY GIGLAA Q+ V R+VV+DL + Sbjct: 9 YPDDRLHTVAKPVEKIDERIKTLITDMFDTMYEARGIGLAATQVDVHERVVVMDLSEE 66 >gi|302519737|ref|ZP_07272079.1| formylmethionine deformylase [Streptomyces sp. SPB78] gi|302428632|gb|EFL00448.1| formylmethionine deformylase [Streptomyces sp. SPB78] Length = 403 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 27 DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 +I ++D +L G+GL+A QIGV ++ A + +NP++I S + Sbjct: 264 EIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPWGAPA---VTLLNPRVIAGSRE 320 Query: 87 FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 + E C P R R ITVR LA + HE+DHL G+L Sbjct: 321 TAEEYESCPGRPGPRTPTSRPNEITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLL- 379 Query: 147 IDHLSRLK 154 H RL Sbjct: 380 --HPPRLP 385 >gi|291457332|ref|ZP_06596722.1| peptide deformylase [Bifidobacterium breve DSM 20213] gi|291381167|gb|EFE88685.1| peptide deformylase [Bifidobacterium breve DSM 20213] Length = 139 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 5/132 (3%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR S P E + M + + LE S +G+AA IGV R++ +D R Sbjct: 12 LRTPSEPAEPSDEAAMQDLVDTLEANRSR-CVGMAANMIGVGKRIIAFVDEDLGGRVT-- 68 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V +NP +IT SD QEGCLS+ R + R I V Y D + + G A Sbjct: 69 VMLNP-VITASDGAFDTQEGCLSLAGERRTL-RYRRIEVDYEDRRFRARHATFTGWTAQI 126 Query: 134 LQHELDHLNGIL 145 +QHE+DH NGI+ Sbjct: 127 IQHEVDHCNGII 138 >gi|327461858|gb|EGF08189.1| peptide deformylase [Streptococcus sanguinis SK1] Length = 136 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 12/139 (8%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + F + R SR + D+ + + E + IGLAA IGV R+++ Sbjct: 9 IFFLQQLSERASREDLYLAQDLQDTLQANRE-----NCIGLAANMIGVRKRVIIF----- 58 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + P+V NP + + S + +E CLS+ R +R IT+ Y+D + Q Q + Sbjct: 59 LYGLVPVVMFNPVLRSKSGPYQT-EESCLSLVGSRP-TQRYQEITIDYLDKHWQQQTMTL 116 Query: 127 DGLLATCLQHELDHLNGIL 145 GL A QHELDHL GI+ Sbjct: 117 KGLPAQICQHELDHLEGII 135 >gi|33357294|pdb|1LM6|A Chain A, Crystal Structure Of Peptide Deformylase From Streptococcus Pneumoniae Length = 215 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 19/133 (14%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84 M E M G+GLAA Q+ + R++ + + A+ +++ NPKI++ S Sbjct: 73 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 131 Query: 85 DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D ++ + EG LS+ P Y V R A +TV Y D + + I G + +QHE+D Sbjct: 132 QDAALGEGEGXLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 188 Query: 140 HLNGILFIDHLSR 152 H+NGI+F D ++ Sbjct: 189 HINGIMFYDRINE 201 >gi|118586207|ref|ZP_01543674.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163] gi|118433357|gb|EAV40056.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163] Length = 197 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 21/164 (12%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54 +P+LR ++P+ ++ +I L MLE + + G+GLA Q+ Sbjct: 21 NPVLRAKAQPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQVNKSLQ 80 Query: 55 LYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSAF 109 + L++ L K + NPKI S + + EGCLS D V R+ Sbjct: 81 MTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALEAGEGCLSKDEDTPGIVLRADK 140 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV Y D N +H I A QHE+DHL GI++ DH++ L Sbjct: 141 ITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 184 >gi|290579649|ref|YP_003484041.1| putative polypeptide deformylase [Streptococcus mutans NN2025] gi|254996548|dbj|BAH87149.1| putative polypeptide deformylase [Streptococcus mutans NN2025] Length = 204 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 12/128 (9%) Query: 37 EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--D 85 E M G+GLAA Q+ + R++ + + + NP + NP+II S D Sbjct: 63 EKMELRGGVGLAAPQLDISKRIIAVLIPNPEDEDGNPPKEAYALKEIMYNPRIIAHSVQD 122 Query: 86 DFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 EGCLS+ V R + +T+ Y D N+ + + G + +QHE+DH NGI Sbjct: 123 AALADGEGCLSVDRVVEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGI 182 Query: 145 LFIDHLSR 152 +F D ++ Sbjct: 183 MFFDRINE 190 >gi|322390160|ref|ZP_08063692.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] gi|321143120|gb|EFX38566.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] Length = 136 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R ++I + + +V NP ++ + +EGCLS+ R Sbjct: 42 VGLAANMIGVKKRAIIIRMGNEN-----LVMFNPVLLEKKKPYQT-EEGCLSLVGSRPTT 95 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R +TV Y D N + + I+ G A QHE+DHL G++ Sbjct: 96 -RYEEMTVAYRDVNWKAKTIHLSGFPAQICQHEMDHLEGVI 135 >gi|262045875|ref|ZP_06018839.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] gi|260573834|gb|EEX30390.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] Length = 184 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 26/172 (15%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54 D +LR+V++P+ SD L D+M++ + + G+GLAA Q+G Sbjct: 12 DSVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111 + L+V D Q K V++NP+I++ S + EG CLS+ + V R +T Sbjct: 72 MAALLVPDDQGKIIFKE--VYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 129 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 + Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQDPFALKEDTV 181 >gi|268320251|ref|YP_003293907.1| polypeptide deformylase [Lactobacillus johnsonii FI9785] gi|262398626|emb|CAX67640.1| polypeptide deformylase [Lactobacillus johnsonii FI9785] Length = 137 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 7/100 (7%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 GLAA IGV R++ + + P+V +NP I+ +D + Y EGCLS+ R + Sbjct: 44 GLAANMIGVQKRIIALFVGPL-----PIVMLNPIIVAQNDKYLAY-EGCLSLTGERP-TE 96 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R ITV+Y + N + + A +QHE+DH NGIL Sbjct: 97 RYKNITVKYQNENLETRQQSFSDFTAEVIQHEIDHCNGIL 136 >gi|239625206|ref|ZP_04668237.1| Def1 [Clostridiales bacterium 1_7_47_FAA] gi|239519436|gb|EEQ59302.1| Def1 [Clostridiales bacterium 1_7_47FAA] Length = 160 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 6/102 (5%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G +AA QIGV R++ + H P++FINP++ + + C+S PD Sbjct: 49 GRAIAAPQIGVKKRVI------YRHLDTPVLFINPRLEFPDKEEMEVMDDCMSFPDLLVR 102 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 V+R + Y D + + +G +A +QHE DHL+GIL Sbjct: 103 VRRYKRCIIHYRDEQWKECSLAFEGDMAELIQHEYDHLDGIL 144 >gi|251782236|ref|YP_002996538.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390865|dbj|BAH81324.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127088|gb|ADX24385.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 136 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IG R+++I + +V NP +++ + + +E CLS+ R Sbjct: 42 LGLAANMIGEQKRVIIISMG-----FVDLVMFNPVMVSKKEAYET-EESCLSLTGSR-QT 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR ITV Y+D N + + + GL A QHELDHL GIL Sbjct: 95 KRYTSITVEYVDLNWRPKRLRLSGLPAQICQHELDHLEGIL 135 >gi|310644037|ref|YP_003948795.1| peptide deformylase 2 [Paenibacillus polymyxa SC2] gi|309248987|gb|ADO58554.1| Peptide deformylase 2 [Paenibacillus polymyxa SC2] Length = 188 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 17/167 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTD------------GIGL 47 ++ K +V +PILR+ P+ ++ + + + ML+ + ++ G+GL Sbjct: 4 LLTKDIVREGEPILRKKVDPVCLPLSEEDLQQMQWMLDYLKNSQNEELATRYELRPGVGL 63 Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDY-RADV 104 +A Q+G+ R+ I +D +F NPK+++ S + EGCLS+ Y V Sbjct: 64 SANQVGLNKRMCAIYYEDGDQTVEYALF-NPKLVSHSTSMIYLEQGEGCLSVDRYIPGYV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R I ++ + +++ G A +QHE+DHL+GI+F D ++ Sbjct: 123 PRYEKIRIKANLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRIN 169 >gi|300768769|ref|ZP_07078665.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493726|gb|EFK28898.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 141 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 9/118 (7%) Query: 28 IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87 + +L+D + ++ + +G+AA IGV +++V+ L A + INPKII + Sbjct: 32 LTDLLDTL--AAHTDNCVGMAANMIGVNKQIIVVQLGPFA-----IAMINPKIIDHHGTY 84 Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +EGCLS+P R R ITV+Y D + + Q + A +QHELDH G L Sbjct: 85 ET-KEGCLSLPGERP-TSRYHQITVKYKDQHFKPQQQRFNDFTAQIIQHELDHCAGKL 140 >gi|300362713|ref|ZP_07058888.1| peptide deformylase [Lactobacillus gasseri JV-V03] gi|300353141|gb|EFJ69014.1| peptide deformylase [Lactobacillus gasseri JV-V03] Length = 137 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 7/100 (7%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 GLAA IGV R++ + + P+V +NP I+ +D + Y EGCLS+ R + Sbjct: 44 GLAANMIGVQKRIIALFVGPL-----PIVMLNPIIVKKTDKYLAY-EGCLSLEGERP-TE 96 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R ITV+Y + N + + +A +QHE+DH NGIL Sbjct: 97 RYKKITVKYQNENFETRQQDFSDFVAEVIQHEVDHCNGIL 136 >gi|224542289|ref|ZP_03682828.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM 15897] gi|224524831|gb|EEF93936.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM 15897] Length = 137 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 11/138 (7%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 F + + ++ I +D+ + + L + +G+A IG + V+I L+D Sbjct: 10 FFLSQVAEKATKEDLYIGTDLKDTLQAHLH-----ECVGMAGNMIG-YNKAVIIFLED-- 61 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + V NP+II S ++ +EGCLS ++ VKR I V Y D + + +I Sbjct: 62 --EKMHVMYNPEIIKTSGNYHECEEGCLSHVGQKS-VKRYETIKVSYFDESFKKKIKTYT 118 Query: 128 GLLATCLQHELDHLNGIL 145 G A +QHE DHL GIL Sbjct: 119 GFTAQIIQHECDHLKGIL 136 >gi|291551092|emb|CBL27354.1| N-formylmethionyl-tRNA deformylase [Ruminococcus torques L2-14] Length = 136 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++ +++ + NPKI+ + + +EGCLS+ R+ Sbjct: 42 VGMAANMIGVKKRIIAVNMGSF-----NIAMFNPKIVKRTGAYET-EEGCLSLDGVRS-C 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R I V Y D N + + G A +QHE+DH +GIL Sbjct: 95 RRYQEIEVEYQDMNFKKKREKYSGWTAQIIQHEIDHCDGIL 135 >gi|322390858|ref|ZP_08064367.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] gi|321142443|gb|EFX37912.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] Length = 204 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 18/132 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS- 84 M E + G+GLAA Q+ + R++ + + + NP V NPK++ S Sbjct: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSV 120 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y + + + I G + +QHE+D Sbjct: 121 QDAALGDGEGCLSVDRNVPGY---VVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEID 177 Query: 140 HLNGILFIDHLS 151 H NGI+F D ++ Sbjct: 178 HTNGIMFYDRIN 189 >gi|296877265|ref|ZP_06901305.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] gi|312867979|ref|ZP_07728183.1| peptide deformylase [Streptococcus parasanguinis F0405] gi|296431785|gb|EFH17592.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] gi|311096383|gb|EFQ54623.1| peptide deformylase [Streptococcus parasanguinis F0405] Length = 204 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 18/132 (13%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS- 84 M E + G+GLAA Q+ + R++ + + + NP V NPK++ S Sbjct: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSV 120 Query: 85 -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 D EGCLS+ P Y V R A +TV Y + + + I G + +QHE+D Sbjct: 121 QDAALGDGEGCLSVDRNVPGY---VVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEID 177 Query: 140 HLNGILFIDHLS 151 H NGI+F D ++ Sbjct: 178 HTNGIMFYDRIN 189 >gi|15674896|ref|NP_269070.1| peptide deformylase [Streptococcus pyogenes M1 GAS] gi|21910126|ref|NP_664394.1| peptide deformylase [Streptococcus pyogenes MGAS315] gi|28896175|ref|NP_802525.1| peptide deformylase [Streptococcus pyogenes SSI-1] gi|50914040|ref|YP_060012.1| peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71903322|ref|YP_280125.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71910490|ref|YP_282040.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94990244|ref|YP_598344.1| peptide deformylase [Streptococcus pyogenes MGAS10270] gi|139473964|ref|YP_001128680.1| peptide deformylase [Streptococcus pyogenes str. Manfredo] gi|306827532|ref|ZP_07460815.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] gi|13622035|gb|AAK33791.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS] gi|21904318|gb|AAM79197.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315] gi|28811426|dbj|BAC64358.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1] gi|50903114|gb|AAT86829.1| Peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71802417|gb|AAX71770.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71853272|gb|AAZ51295.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94543752|gb|ABF33800.1| Peptide deformylase [Streptococcus pyogenes MGAS10270] gi|134272211|emb|CAM30457.1| peptide deformylase [Streptococcus pyogenes str. Manfredo] gi|304430330|gb|EFM33356.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] Length = 136 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 38 VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97 Y + +G+AA IG R+V++ + +V NP +++ + +E CLS+ Sbjct: 35 AFYRQECLGMAANMIGEQKRIVIVSMG-----FIDLVMFNPVMVSKKGIYQT-KESCLSL 88 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 YR +R ITV Y+D N + + + GL A QHELDHL GIL Sbjct: 89 SGYRK-TQRYDKITVEYLDHNWRPKRLSLTGLTAQICQHELDHLEGIL 135 >gi|28379384|ref|NP_786276.1| peptide deformylase [Lactobacillus plantarum WCFS1] gi|254557520|ref|YP_003063937.1| peptide deformylase [Lactobacillus plantarum JDM1] gi|308181597|ref|YP_003925725.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272223|emb|CAD65131.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1] gi|254046447|gb|ACT63240.1| peptide deformylase [Lactobacillus plantarum JDM1] gi|308047088|gb|ADN99631.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 136 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 9/118 (7%) Query: 28 IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87 + +L+D + ++ + +G+AA IGV +++V+ L A + INPKII + Sbjct: 27 LTDLLDTL--AAHTDNCVGMAANMIGVNKQIIVVQLGPFA-----IAMINPKIIDHHGTY 79 Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +EGCLS+P R R ITV+Y D + + Q + A +QHELDH G L Sbjct: 80 ET-KEGCLSLPGERP-TSRYHQITVKYKDQHFKPQQQRFNDFTAQIIQHELDHCAGKL 135 >gi|313683120|ref|YP_004060858.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994] gi|313155980|gb|ADR34658.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994] Length = 273 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 5/152 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K L+ +PD +R +S I K + ++ L++NM + M + ++A+QI + Y +++ Sbjct: 3 KELITYPDERIRYISADIRKYDDELFELLENMRDTMEHHELNAISAIQIAIPYSAILLK- 61 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +N + IN ++I+ + + + A +KR I V Y + N + + Sbjct: 62 ----EGENILELINARLISTEGVEEIDEVSPYFPKGFSAKIKRYGKIKVVYENRNGELRH 117 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A+G L+ LQ ++D L G +D L + +R Sbjct: 118 LDAEGELSQRLQRQIDFLFGGTLLDKLDKKER 149 >gi|42519881|ref|NP_965811.1| peptide deformylase [Lactobacillus johnsonii NCC 533] gi|41584171|gb|AAS09777.1| polypeptide deformylase [Lactobacillus johnsonii NCC 533] Length = 137 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 7/100 (7%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 GLAA IGV R++ + + P+V +NP I+ D + Y EGCLS+ R + Sbjct: 44 GLAANMIGVQKRIIALFVGPL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGERP-TE 96 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R ITV+Y + N + + A +QHE+DH NGIL Sbjct: 97 RYKTITVKYQNENLETRQQSFSDFTAEVIQHEVDHCNGIL 136 >gi|227889181|ref|ZP_04006986.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] gi|227850410|gb|EEJ60496.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] Length = 137 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 10/141 (7%) Query: 6 LVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 L+I + L+ S P K + +L D +L Y GLAA IGV R++ + + Sbjct: 5 LIIHDELSLKFKSLPATKQDLGAATDLKDTLLANKYR--AAGLAANMIGVQKRIIALFIG 62 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V +NP I+ D + Y EGCLS+ R +R ITV+Y + N + + Sbjct: 63 PL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGERP-TERYKNITVKYQNENLETRQQ 115 Query: 125 YADGLLATCLQHELDHLNGIL 145 A +QHE+DH NGIL Sbjct: 116 SFSDFTAEVIQHEVDHCNGIL 136 >gi|94994165|ref|YP_602263.1| peptide deformylase [Streptococcus pyogenes MGAS10750] gi|94547673|gb|ABF37719.1| Peptide deformylase [Streptococcus pyogenes MGAS10750] Length = 136 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 38 VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97 Y + +G+AA IG R+V++ + +V NP +++ + +E CLS+ Sbjct: 35 AFYRQECLGMAANMIGEQKRIVIVSMGF-----IDLVMFNPVMVSKKGIYQT-KESCLSL 88 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 YR +R ITV Y+D N + + + GL A QHELDHL GIL Sbjct: 89 SGYRK-TQRYDKITVEYLDHNWRPKRLNLTGLTAQICQHELDHLEGIL 135 >gi|322377869|ref|ZP_08052358.1| peptide deformylase [Streptococcus sp. M334] gi|321281292|gb|EFX58303.1| peptide deformylase [Streptococcus sp. M334] Length = 136 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV +++ +L P+V NP ++++ + +EGCLS+ R Sbjct: 42 VGLAANMIGVQKCVIIFNLG-----LVPVVMFNPVLLSYEGLYET-EEGCLSLTGVRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 KR I V Y D Q Q + G A QHELDHL G Sbjct: 95 KRYETIRVAYRDSKWQEQTMILTGFPAQICQHELDHLEG 133 >gi|94988363|ref|YP_596464.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94992245|ref|YP_600344.1| peptide deformylase [Streptococcus pyogenes MGAS2096] gi|94541871|gb|ABF31920.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94545753|gb|ABF35800.1| Peptide deformylase [Streptococcus pyogenes MGAS2096] Length = 136 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 38 VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97 Y + +G+AA IG R+V++ + +V NP +++ + +E CLS+ Sbjct: 35 AFYRQECLGMAANMIGEQKRIVIVSM-----GFIDLVMFNPVMVSKKGIYQT-KESCLSL 88 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 YR +R ITV Y+D N + + + GL A QHELDHL GIL Sbjct: 89 SGYRK-TQRYDKITVEYLDHNWRPKRLNLTGLTAQICQHELDHLEGIL 135 >gi|312868505|ref|ZP_07728705.1| peptide deformylase [Streptococcus parasanguinis F0405] gi|311096250|gb|EFQ54494.1| peptide deformylase [Streptococcus parasanguinis F0405] Length = 185 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R ++I + +V NP ++ + +EGCLS+ R Sbjct: 91 VGLAANMIGVKKRAIIIRMGSEN-----LVLFNPVLLEKKKPYQT-EEGCLSLVGSRPTT 144 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I+V Y D N + + I+ G A QHE+DHL GI+ Sbjct: 145 -RYEEISVAYRDVNWKAKTIHLSGFPAQICQHEMDHLEGII 184 >gi|139438029|ref|ZP_01771582.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC 25986] gi|133776226|gb|EBA40046.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC 25986] Length = 136 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 13/118 (11%) Query: 30 NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV 89 +L+D + E + + +GLAA IGV R++ + + A ++ NP+I+ + + Sbjct: 29 DLLDTLHE--HEHECVGLAANMIGVRKRIICVKDGNRA-----LLMYNPQIL---EQVNA 78 Query: 90 YQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 YQ EGCLS+ R R I V Y+D N H+I G A +QHE+DH NGI+ Sbjct: 79 YQTSEGCLSLIGERP-CTRYRRIKVEYLDENFVHRIKNFSGYTAEVIQHEIDHCNGIV 135 >gi|313884730|ref|ZP_07818486.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] gi|312620098|gb|EFR31531.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] Length = 188 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 9/117 (7%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM------VFINPKIITFSDDFSVYQ--EGCL 95 G+GLAA Q+G ++ + L+ + + + INP+II S + + EGCL Sbjct: 58 GVGLAAPQLGYDKKIFCVYLEAYDEENDSTEVMMDEIVINPRIIKHSVKKAALKDGEGCL 117 Query: 96 SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 S+ + V R +T+RY + + I A QHE DHL GI+F +H+S Sbjct: 118 SVNREVPGLVPRPKRVTLRYYNLDGDELEIKLTDYEAMVFQHEFDHLKGIMFYEHIS 174 >gi|222152449|ref|YP_002561624.1| peptide deformylase [Streptococcus uberis 0140J] gi|254767604|sp|B9DTD6|DEF_STRU0 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|222113260|emb|CAR40782.1| polypeptide deformylase [Streptococcus uberis 0140J] Length = 204 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 16/131 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITF 83 M E + G+GLAA Q+ + R++ + +++D NP + NPKI+ Sbjct: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNMEDS--EGNPPKEAYSLQEIMYNPKIVAH 118 Query: 84 SDDFSVYQ--EGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 S + EGCLS+ V R + +TV Y D I G A +QHE+DH Sbjct: 119 SVQEAALADGEGCLSVDRLVEGYVVRHSRVTVDYYDKKGDKHRIKLKGYNAIVVQHEIDH 178 Query: 141 LNGILFIDHLS 151 +NGI+F D ++ Sbjct: 179 INGIMFYDRIN 189 >gi|154505120|ref|ZP_02041858.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149] gi|153794599|gb|EDN77019.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149] Length = 159 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 6/102 (5%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G +AA QIGV RL+ I L D P V INP++ ++ + C+S P+ Sbjct: 49 GRAIAAPQIGVQKRLICI-LTDQ-----PYVIINPRLEFVGNEMMELMDDCMSFPNLLVR 102 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 V+R + Y+D N + Q +Y + ++ +QHE DHL+GIL Sbjct: 103 VRRYRRCILHYLDENWKEQEMYLEDDMSELIQHEYDHLDGIL 144 >gi|165933262|ref|YP_001650051.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|165908349|gb|ABY72645.1| peptide deformylase [Rickettsia rickettsii str. Iowa] Length = 119 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 35 IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 94 Query: 66 HAHRKNPMVFINPKIITFSDDFSVY 90 + ++ +P+VFINP I FS++ + Sbjct: 95 N-NKSSPIVFINPDITYFSEETQTF 118 >gi|229826625|ref|ZP_04452694.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC 49176] gi|229789495|gb|EEP25609.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC 49176] Length = 138 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 10/134 (7%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR S P+ K D M +++++ + + Y+ + +G++A IG+ ++ I ++ Sbjct: 12 LRLKSEPVTK---DDMAVVEDLKDTLKAYADECVGMSANMIGINKAVIAIQPEN---SDV 65 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V +NPKII S + +EGC+ + R V R IT+ Y D + + I G +A Sbjct: 66 MTVMLNPKIIKKSGAYET-EEGCMCLEGERKAV-RHRNITLEYFDEDFKKHIKLYSGYIA 123 Query: 132 TCLQHELDHLNGIL 145 ++HE DHL GI+ Sbjct: 124 EIIEHECDHLEGII 137 >gi|157828546|ref|YP_001494788.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801027|gb|ABV76280.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 94 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVY 90 + ++ +P+VFINP I FS++ + Sbjct: 70 N-NKSSPIVFINPDITYFSEETQTF 93 >gi|269114884|ref|YP_003302647.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis] gi|268322509|emb|CAX37244.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis ATCC 23114] Length = 185 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 23/167 (13%) Query: 6 LVIFPDPILRRVSRPIEK---------INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 LV P+ +LR S+ +E I I ++ D+ +G+AAVQ G+L Sbjct: 9 LVQLPEKVLRNKSKNVELPLTAEDDLLIQKMIFHVDDSQTPQTKFRPAVGVAAVQYGILK 68 Query: 57 RLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSIPDYRAD----VKR 106 + + ++D +N +F INP +++ S+ QEG CLS+ + A V R Sbjct: 69 NIFYVMVKDD---QNNYIFRDALINPIMLSHSNHKISLQEGEGCLSVKESDAGQEGFVYR 125 Query: 107 SAFITVRYMDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSR 152 + + ++ + + IY G A LQHE DHL G LFID +++ Sbjct: 126 YSRVVIKAYSYFEKKEKIYDVSGYPAIVLQHEYDHLQGKLFIDRINK 172 >gi|319938534|ref|ZP_08012927.1| peptide deformylase [Coprobacillus sp. 29_1] gi|319806298|gb|EFW02974.1| peptide deformylase [Coprobacillus sp. 29_1] Length = 137 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 6/108 (5%) Query: 38 VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97 V + +G+AA IG R++++ + + +V INP I+ S + EGCLS Sbjct: 35 VAHEDHCVGMAANMIGYHKRIIIV-----KNNNDHLVMINPIILKTSGRYYDTHEGCLSH 89 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +A VKR I V Y D + + +I +G +A +QHE+DH GIL Sbjct: 90 IGEKA-VKRYEKIKVEYKDIHFKVKIKTFEGYVAQIIQHEIDHCQGIL 136 >gi|329668141|gb|AEB94089.1| polypeptide deformylase [Lactobacillus johnsonii DPC 6026] Length = 137 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 7/100 (7%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 GLAA IGV R++ + + P+V +NP I+ D + Y EGCLS+ R + Sbjct: 44 GLAANMIGVQKRIIALFVGPL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGERP-TE 96 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R ITV+Y + N + + A +QHE+DH NGIL Sbjct: 97 RYKNITVKYQNENLETRQQSFSDFTAEVIQHEVDHCNGIL 136 >gi|229586292|ref|YP_002844793.1| Polypeptide deformylase [Rickettsia africae ESF-5] gi|228021342|gb|ACP53050.1| Polypeptide deformylase [Rickettsia africae ESF-5] Length = 224 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 10/119 (8%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95 GLAA QIG+ +++ + + A K ++INP D E C Sbjct: 84 GLAAPQIGISKCIIIFAVHEDAELKKWHPDLKDTIPKTIWINPSYKPIGIDKHEDYEECF 143 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 S+ + V R I D N A+G LA +QHE+DHLNG +F+D+++ K Sbjct: 144 SVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKK 202 >gi|56808912|ref|ZP_00366621.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes M49 591] gi|209559224|ref|YP_002285696.1| peptide deformylase [Streptococcus pyogenes NZ131] gi|209540425|gb|ACI61001.1| Peptide deformylase [Streptococcus pyogenes NZ131] Length = 136 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 11/110 (10%) Query: 38 VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCL 95 Y + G+AA IG R+V++ + +V NP +++ +YQ E CL Sbjct: 35 AFYRQECFGMAANMIGEQKRIVIVSM-----GFIDLVMFNPVMVSKK---GIYQTKESCL 86 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 S+ YR +R ITV Y+D N + + + GL A QHELDHL GIL Sbjct: 87 SLSGYRK-TQRYDKITVEYLDHNWRPKRLSLTGLTAQICQHELDHLEGIL 135 >gi|296875884|ref|ZP_06899945.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] gi|296433125|gb|EFH18911.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] Length = 136 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R ++I + +V NP ++ + +EGCLS+ R Sbjct: 42 VGLAANMIGVKKRAIIIRMGSEN-----LVLFNPVLLEKKKPYQT-EEGCLSLVGSRPTT 95 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I+V Y D N + + I+ G A QHE+DHL GI+ Sbjct: 96 -RYEEISVAYRDVNWKAKKIHLSGFPAQICQHEMDHLEGII 135 >gi|321463123|gb|EFX74141.1| hypothetical protein DAPPUDRAFT_307445 [Daphnia pulex] Length = 234 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 17/155 (10%) Query: 11 DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP LR S + ++++S+ I N++ + VM IG++A QIG+ R+++I++ D Sbjct: 52 DPTLRLKSSEVVLDELSSERIKNILLVLRGVMKHYKAIGISAPQIGIPLRIIMIEIPDSL 111 Query: 68 HRK-------------NPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 K P VFINP + +++ E C S+ A V R + V+ Sbjct: 112 VEKFGPETCKTREIVPTPFKVFINPVMQVKDFKKTLFPEACESLKGISAIVPRYRAVHVK 171 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + + A G A +QHE+DHL+G ++ D Sbjct: 172 GYEYDGSPTEWDATGWAARIVQHEMDHLDGQIYTD 206 >gi|227515637|ref|ZP_03945686.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] gi|227086067|gb|EEI21379.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] Length = 136 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 12/136 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +L++ +RP + + + L + IG+AA IG ++ + L P Sbjct: 11 VLQQPARPATSADRQLAEALVATL-TAHQDHCIGMAANMIGFPVSIIAVSL-------GP 62 Query: 73 M--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP+++ + + +EGCLS+ R+ R ITV Y D Q + GL Sbjct: 63 VNVAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTGAQQELELTGLA 120 Query: 131 ATCLQHELDHLNGILF 146 A +QHE DHL GIL Sbjct: 121 AQAVQHECDHLRGILI 136 >gi|77406283|ref|ZP_00783349.1| polypeptide deformylase [Streptococcus agalactiae H36B] gi|77175095|gb|EAO77898.1| polypeptide deformylase [Streptococcus agalactiae H36B] Length = 136 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IG R+++I++ +V NP ++ SD + +E CLS+ R+ Sbjct: 42 VGMAANMIGSXKRVIIINV-----GITNLVMXNPVLVAKSDPYET-EESCLSLVGCRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R IT+ Y D N + Q I A QHELDHL GIL Sbjct: 95 QRYHHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGIL 135 >gi|70726701|ref|YP_253615.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435] gi|68447425|dbj|BAE05009.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 162 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + LV P+L + ++PI+ ++ + +L+ ++ + +Y+ + L A QIG+ ++ + Sbjct: 1 MAIQKLVQSTHPVLTKQAQPIKAYDATLKDLLLDLEDTLYAEEASALCAPQIGISKQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + NPKI + S+D + EG +++P +V+RS IT+ D Sbjct: 61 IDME----VEGLLQLFNPKIKSESNDKIIDLEGSVNLPGIYGEVERSKMITIEANDLEGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A +A + H +D +NGI F L D Sbjct: 117 TIELTAYDDVARMILHIVDQMNGIPFTKRAQHLLTD 152 >gi|304385668|ref|ZP_07368012.1| peptide deformylase [Pediococcus acidilactici DSM 20284] gi|304328172|gb|EFL95394.1| peptide deformylase [Pediococcus acidilactici DSM 20284] Length = 136 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 7/102 (6%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 +GLAA IGV +++ + + + +NPK+ S + +EGCLS+ R+ Sbjct: 41 AVGLAANMIGVKKQIIAVSIGVM-----NIAMLNPKLTKKSHPYQA-KEGCLSLTGERST 94 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V+Y D N + Q + G +A +QHE+DH GIL Sbjct: 95 T-RYKEIEVQYQDLNFKKQTQHFSGWIAEIIQHEIDHCAGIL 135 >gi|260663513|ref|ZP_05864403.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] gi|260552054|gb|EEX25107.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] Length = 136 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 12/136 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +L++ +RP + + + L + IG+AA IG ++ + L P Sbjct: 11 VLQQPARPATNADRQLAEALVATL-TAHQDHCIGMAANMIGFPVSIIAVSL-------GP 62 Query: 73 M--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP+++ + + +EGCLS+ R+ R ITV Y D Q + GL Sbjct: 63 VNVAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTGAQQELELTGLA 120 Query: 131 ATCLQHELDHLNGILF 146 A +QHE DHL GIL Sbjct: 121 AQAVQHECDHLRGILI 136 >gi|316983220|pdb|3L87|A Chain A, The Crystal Structure Of Smu.143c From Streptococcus Mutans Ua159 Length = 238 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 25/166 (15%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58 P LR V++ + +N D + L + ML+ + ++ G+GLAA Q+ + R+ Sbjct: 59 PTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRI 118 Query: 59 VVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY-RADVKR 106 + + + + + NP V NP+II S D EG LS+ V R Sbjct: 119 IAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGXLSVDRVVEGYVIR 178 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +T+ Y D N+ + + G + +QHE+DH NGI+F D ++ Sbjct: 179 HSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINE 224 >gi|222152925|ref|YP_002562102.1| peptide deformylase [Streptococcus uberis 0140J] gi|222113738|emb|CAR41729.1| peptide deformylase [Streptococcus uberis 0140J] Length = 136 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +VK PL + L ++ KI +D+++ + + + +G+AA IG R+++ Sbjct: 5 IVKDPLFLQQKSAL--ATKEDIKIGTDLLDTL-----AYHRENCLGMAANMIGESKRIII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + +V NP II+ D F +E CLS+ R R I V Y+D + Sbjct: 58 ISMG-----FVDLVMFNPMIISKKDSFHA-EESCLSLSGSRK-TTRYKEIKVDYLDHHWM 110 Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145 + + GL A QHELDHL GIL Sbjct: 111 KKSLTLTGLPAQVCQHELDHLEGIL 135 >gi|67458516|ref|YP_246140.1| polypeptide deformylase [Rickettsia felis URRWXCal2] gi|67004049|gb|AAY60975.1| Polypeptide deformylase [Rickettsia felis URRWXCal2] Length = 224 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 10/119 (8%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95 GLAA QI + +++ + ++ K ++INP D EGC Sbjct: 84 GLAAPQISISKCIIIFAVHENEELKKWRPNLKDTMPKTIWINPSYKPIGIDKHEDYEGCF 143 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 S+ + V R I D N A+G LA +QHE+DHLNG +F+D+ + K Sbjct: 144 SVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYAAPKK 202 >gi|306831575|ref|ZP_07464733.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426360|gb|EFM29474.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 136 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R +++++ +V NP ++ S F +E CLS+ R Sbjct: 42 VGMAANMIGVKKRAIIVNMGGA-----DLVMFNPVLLNKSLPFDT-KESCLSLTGARP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R I V ++D N Q + GL A QHELDHL GI+ Sbjct: 95 RRYQRIEVSFLDKNWNQQTLTLTGLPAQICQHELDHLEGII 135 >gi|291390393|ref|XP_002711708.1| PREDICTED: peptide deformylase-like [Oryctolagus cuniculus] Length = 126 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%) Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V +NP + + EGC S+ + A V R + + +D + + A G A Sbjct: 35 VLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEQVVWPASGWTARI 94 Query: 134 LQHELDHLNGILFIDHL 150 +QHE+DHL G LFID + Sbjct: 95 IQHEMDHLQGCLFIDKM 111 >gi|270290078|ref|ZP_06196304.1| polypeptide deformylase [Pediococcus acidilactici 7_4] gi|270281615|gb|EFA27447.1| polypeptide deformylase [Pediococcus acidilactici 7_4] Length = 136 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 7/102 (6%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 +GLAA IGV +++ + + + +NPK+ S + +EGCLS+ R+ Sbjct: 41 AVGLAANMIGVKKQIIAVSIGVM-----NIAMLNPKLTKKSHPYQA-KEGCLSLAGERST 94 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V+Y D N + Q + G +A +QHE+DH G+L Sbjct: 95 T-RYKEIEVQYQDLNFKKQTQHFSGWIAEIIQHEIDHCAGVL 135 >gi|302876100|ref|YP_003844733.1| formylmethionine deformylase [Clostridium cellulovorans 743B] gi|307686823|ref|ZP_07629269.1| peptide deformylase [Clostridium cellulovorans 743B] gi|302578957|gb|ADL52969.1| formylmethionine deformylase [Clostridium cellulovorans 743B] Length = 136 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 14/140 (10%) Query: 12 PILRRV----SRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQD 65 PI++ V + E +DI+ ++D++++ + S + +GLAA IGV R++V + D Sbjct: 4 PIVKDVLFLGQKSEEATKNDIV-VVDDLIDTLRSNLENCVGLAANMIGVKKRILVFTIGD 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 PM INP I+ + +E CLS+ +R KR I V Y+D + Q Sbjct: 63 IIV---PM--INPVILK-KEKLYETEESCLSLIGFRK-TKRYEMIEVEYLDRAFKKQKQV 115 Query: 126 ADGLLATCLQHELDHLNGIL 145 G A +QHE+DH GI+ Sbjct: 116 FTGFTAQIIQHEMDHFEGII 135 >gi|315037295|ref|YP_004030863.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] gi|325955774|ref|YP_004286384.1| peptide deformylase [Lactobacillus acidophilus 30SC] gi|312275428|gb|ADQ58068.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] gi|325332339|gb|ADZ06247.1| peptide deformylase [Lactobacillus acidophilus 30SC] gi|327182600|gb|AEA31047.1| peptide deformylase [Lactobacillus amylovorus GRL 1118] Length = 137 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 11/104 (10%) Query: 44 GIGLAAVQIGVLYRLVV--IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 +GLAA IG R++ + L P+V +NP+I S ++ + +EGCLS+ R Sbjct: 42 AVGLAANMIGKNKRIIAFYVGLL-------PLVMLNPQITKKSGEY-LTEEGCLSLSGER 93 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR ITV Y D N + +A +QHE+DH GIL Sbjct: 94 -KTKRYRTITVTYQDMNLNTKTQEFTDFIAEVIQHEVDHCEGIL 136 >gi|182419964|ref|ZP_02951200.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237665638|ref|ZP_04525626.1| polypeptide deformylase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376215|gb|EDT73800.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237658585|gb|EEP56137.1| polypeptide deformylase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 137 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 9/131 (6%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + +E D+ +ID+M++ + I GLA+ QIG R++V + D + Sbjct: 13 TQKAVEATKKDLY-IIDDMIDTAKANRDICVGLASNQIGENVRIIVALMGDEF-----IP 66 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 +NPKIIT S +E CLS + + S+ I V Y D N + + G +A + Sbjct: 67 LVNPKIITHSVATYEDEEACLSHEGTKKATRYSS-IEVEYRDRNFKKRKNIFKGFVAQII 125 Query: 135 QHELDHLNGIL 145 QHE+DH GIL Sbjct: 126 QHEMDHCEGIL 136 >gi|291542377|emb|CBL15487.1| N-formylmethionyl-tRNA deformylase [Ruminococcus bromii L2-63] Length = 136 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++ I+ +V NP+II+ +F +EGCLS+ R V Sbjct: 42 VGMAANMIGVAKRIIAIN-----DNGKYLVMFNPEIISKFGEFET-EEGCLSLDGERKTV 95 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V+Y + N + A +QHE+DH NGIL Sbjct: 96 -RYKTIKVKYFNENFKQIKRSFSDFTAQIIQHEIDHCNGIL 135 >gi|160935285|ref|ZP_02082667.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC BAA-613] gi|158441643|gb|EDP19343.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC BAA-613] Length = 173 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 20/154 (12%) Query: 2 VKKPLVIFPDPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTDGIG--LAAVQ 51 V++ +++ +P L S+ + E++ D L D +L + G+G +AA Q Sbjct: 14 VERTILLLGNPELYEASQEVKIEELHQMEQVRED---LKDTLL-AFRARYGVGRAIAAPQ 69 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IGV R++ + H P++FINP++ + + C+S PD VKR Sbjct: 70 IGVKKRVI------YRHLDTPVLFINPRLTFPEQEMIDVLDDCMSFPDLLVRVKRYKRCI 123 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 + Y D + G ++ +QHE DHL+GIL Sbjct: 124 IYYKDLEWNDCSMELKGDMSELIQHEYDHLDGIL 157 >gi|296454738|ref|YP_003661881.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum JDM301] gi|296184169|gb|ADH01051.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum JDM301] Length = 134 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 4/101 (3%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++V +D R V +NP +IT SD QEGCLS+ R + Sbjct: 37 VGMAANMIGVSKRIIVFVDEDLGGRIT--VMLNP-VITASDGAFDTQEGCLSLTGERRTL 93 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y D + + G A +QHE+DH NGI+ Sbjct: 94 -RCRRIEVNYEDRRFRARHATFTGWTAQIIQHEVDHCNGII 133 >gi|166030770|ref|ZP_02233599.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC 27755] gi|166029352|gb|EDR48109.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC 27755] Length = 136 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 10/133 (7%) Query: 14 LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 L + S P + + + ++L+D + + +G+AA IGV R++ +++ N Sbjct: 12 LGQKSEPATQADKQVAIDLLDTLK--AHEEGCVGMAANMIGVKKRIIAVNM----GFMNV 65 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 +F NP+I+ S + +EGCLS+ R R I + Y D N + Q G +A Sbjct: 66 AMF-NPRIVKKSGSYQT-EEGCLSLIGVRP-CTRYQEIELEYQDMNWKKQRQKYTGWIAQ 122 Query: 133 CLQHELDHLNGIL 145 +QHE+DH NGI+ Sbjct: 123 IIQHEVDHCNGII 135 >gi|317482099|ref|ZP_07941123.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|316916458|gb|EFV37856.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] Length = 139 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 P E +I+++++ + + +G+AA IGV R++V +D R V +N Sbjct: 15 PSEAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRIT--VMLN 72 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 P +IT SD QEGCLS+ R + R I V Y D + + G A +QHE Sbjct: 73 P-VITASDGAFDTQEGCLSLTGERRTL-RYRRIEVNYEDRRFRARHATFTGWTAQIIQHE 130 Query: 138 LDHLNGIL 145 +DH NGI+ Sbjct: 131 VDHCNGII 138 >gi|288905492|ref|YP_003430714.1| polypeptide deformylase [Streptococcus gallolyticus UCN34] gi|288732218|emb|CBI13783.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34] Length = 136 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++++++ +V NP ++ S F +E CLS+ R Sbjct: 42 VGMAANMIGVKKRVIIVNMG-----VADLVMFNPVLLNKSLPFDT-KESCLSLTGARP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R I V ++D N Q + GL A QHELDHL GI+ Sbjct: 95 RRYQKIEVSFLDKNWNQQTLTLTGLPAQICQHELDHLEGII 135 >gi|322372342|ref|ZP_08046878.1| peptide deformylase [Streptococcus sp. C150] gi|321277384|gb|EFX54453.1| peptide deformylase [Streptococcus sp. C150] Length = 136 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 7/106 (6%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 Y +G+AA IGV R++++++ +V NP +++ S F +E CLS+ Sbjct: 37 YKDACVGMAANMIGVKKRVIIVNIGFVN-----LVMFNPVLVSKSSLFQT-EESCLSLEG 90 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R +R I V Y+D + + G+LA +QHELDHL GI+ Sbjct: 91 SRP-TRRYESIEVAYLDEQWMPKQLSFSGMLAQIIQHELDHLEGII 135 >gi|323466783|gb|ADX70470.1| Peptide deformylase [Lactobacillus helveticus H10] Length = 184 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 28/173 (16%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57 D +LR+V++P+ SD L ++M+E + ++ G+GLAA Q+G + Sbjct: 12 DLVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71 Query: 58 LVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFI 110 + + + D K ++F +NP+I++ S + EG CLS+ V R + Sbjct: 72 MAALLVPDD---KGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPRPDKL 128 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158 T+ Y + + + I A HE+DHLNG LF D +++ LK D + Sbjct: 129 TIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKEDTV 181 >gi|317499718|ref|ZP_07957976.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893024|gb|EFV15248.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 136 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRA 102 +G+AA IGV +++V+ + P F INPKI S F +EGCLS+ R Sbjct: 42 VGMAANMIGVKKKIIVVAV-------GPFQFAMINPKITKKSGVFET-EEGCLSLDGVRP 93 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR I V Y+D + + Q G A +QHE+DH GI+ Sbjct: 94 -CKRYKEIEVDYLDQDFKKQHGKYSGWTAQIIQHEIDHCKGIV 135 >gi|213425785|ref|ZP_03358535.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213618713|ref|ZP_03372539.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 53 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/45 (60%), Positives = 35/45 (77%) Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 5 LEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 49 >gi|255974264|ref|ZP_05424850.1| peptide deformylase [Enterococcus faecalis T2] gi|255967136|gb|EET97758.1| peptide deformylase [Enterococcus faecalis T2] Length = 89 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 3/87 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI++ Sbjct: 4 PVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEID 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQ 91 + + R INP II + +++ Sbjct: 64 EESGR---FELINPVIIEKKEPVLMWK 87 >gi|239621615|ref|ZP_04664646.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515490|gb|EEQ55357.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 128 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 P E +I+++++ + + +G+AA IGV R++V +D R V +N Sbjct: 4 PSEAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRIT--VMLN 61 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 P +IT SD QEGCLS+ R + R I V Y D + + G A +QHE Sbjct: 62 P-VITASDGAFDTQEGCLSLTGERRTL-RYRRIEVNYEDRRFRARHATFTGWTAQIIQHE 119 Query: 138 LDHLNGIL 145 +DH NGI+ Sbjct: 120 VDHCNGII 127 >gi|157150232|ref|YP_001451024.1| peptide deformylase [Streptococcus gordonii str. Challis substr. CH1] gi|157075026|gb|ABV09709.1| formylmethionine deformylase [Streptococcus gordonii str. Challis substr. CH1] Length = 136 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IG R+++ + P++ NP + S + +EGCLS+ R+ Sbjct: 42 VGLAANMIGDKKRVIIF-----MYGMVPIIMFNPILRAKSGPYQT-EEGCLSLVGSRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R ITV Y+D N Q Q I A QHELDHL GIL Sbjct: 95 TRYQEITVDYLDRNWQPQTITLKDFPAQICQHELDHLEGIL 135 >gi|290476474|ref|YP_003469379.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] gi|289175812|emb|CBJ82615.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] Length = 62 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 39/57 (68%) Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + V +D + + ++ ++ L+ +QHE+DHLNGI+FID+LS LKR M KK+ K + Sbjct: 1 MKVEALDRHGKAMVVESEDFLSIVMQHEIDHLNGIVFIDYLSPLKRQMALKKVKKFL 57 >gi|323341211|ref|ZP_08081458.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] gi|323091405|gb|EFZ34030.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] Length = 136 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 11/103 (10%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIPDYRA 102 +G+AA IG+ R++ P++ INP+I + F Y +EGCLS+ R Sbjct: 42 VGMAANMIGINKRIIACFFGPF-----PVLMINPEI---TRKFGPYTAEEGCLSLEGKRV 93 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR I V Y+D N Q D A +QHE+DH NGIL Sbjct: 94 -AKRFKHIEVTYLDENFAKQRQKLDDFNAQIVQHEIDHCNGIL 135 >gi|116493404|ref|YP_805139.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745] gi|116103554|gb|ABJ68697.1| N-formylmethionyl-tRNA deformylase [Pediococcus pentosaceus ATCC 25745] Length = 136 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 10/141 (7%) Query: 7 VIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 VI IL + S P K + S +M+L+D + S +G+AA IGV R++V+ + Sbjct: 5 VIHDQQILSQTSIPATKQDLSVVMDLMDTLKA--NSERCVGMAANMIGVHKRIIVVTM-- 60 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 PM INP I+ + ++ +EGCLS+ R+ R I V+Y+D + Sbjct: 61 -GMMNVPM--INPVILKKGNPYTT-EEGCLSLTGERS-TTRYDEIEVQYLDLEFKKHTQE 115 Query: 126 ADGLLATCLQHELDHLNGILF 146 +A +QHE+DH +GI+ Sbjct: 116 FKEFIAQIIQHEVDHCDGIII 136 >gi|160914591|ref|ZP_02076805.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991] gi|158433131|gb|EDP11420.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991] Length = 139 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 4/101 (3%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV ++ ++ + V +NP II S EGCLS+ R + Sbjct: 42 VGMAANMIGVQKCIIAFLNKESGQYE---VMLNPVIIKTSGIAYRVMEGCLSLAGER-EA 97 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR I V+Y D + + +I G A +QHE+DH NGIL Sbjct: 98 KRYPQIKVQYYDTDMKLKIKSYKGFTAQIIQHEIDHCNGIL 138 >gi|89900986|ref|YP_523457.1| peptide deformylase [Rhodoferax ferrireducens T118] gi|89345723|gb|ABD69926.1| Peptide deformylase [Rhodoferax ferrireducens T118] Length = 186 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 26/156 (16%) Query: 11 DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 DP L R++ P+ ++D ++L I +ML+ M + DG GLAA QIGV +LV+ ++ Sbjct: 11 DPRLLRIAPPVTLFDTDELHLLISDMLDTMLAADGAGLAAPQIGVDLQLVIFG----SNA 66 Query: 70 KNP----------MVFINPKIITF---SDDFSVYQ----EGCLSIPDYRADVKRSAFITV 112 +NP V +NP I +D + Q EGCLS+P RA V R F + Sbjct: 67 RNPRYPQAPVVPQTVLLNPVITPLPPSENDATPLQVEDWEGCLSVPGLRAMVPR--FARI 124 Query: 113 RYMDCNAQHQII--YADGLLATCLQHELDHLNGILF 146 RY + I +G A +QHE DHL G L+ Sbjct: 125 RYTGFDQYGDPINRTVEGFHARVVQHECDHLIGKLY 160 >gi|227530489|ref|ZP_03960538.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] gi|227349594|gb|EEJ39885.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] Length = 136 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 11/109 (10%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSI 97 + + IG+AA I + +++ L P MV NP+I + + EGCLS+ Sbjct: 37 HHAECIGMAANMISINKAIIIASL-------GPINMVMYNPQITQKQEPYQTA-EGCLSL 88 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 P R V R I V + D N Q + + A +QHE+DHLNGIL Sbjct: 89 PGKRT-VTRYRQIKVTFRDQNWHLQTLQLSDIAAEIIQHEIDHLNGILI 136 >gi|325978482|ref|YP_004288198.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178410|emb|CBZ48454.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 136 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R +++++ +V NP ++ S F +E CLS+ R Sbjct: 42 VGMAANMIGVKKRAIIVNMG-----VADLVMFNPVLLNKSLPFDT-KESCLSLTGARP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R I V ++D N Q + GL A QHELDHL GI+ Sbjct: 95 RRYQRIEVSFLDKNWNQQTLTLTGLPAQICQHELDHLEGII 135 >gi|295425141|ref|ZP_06817846.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] gi|295065200|gb|EFG56103.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] Length = 200 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 23/162 (14%) Query: 11 DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54 +P+LR+V++P+ SD L +M+E + ++ G+GLAA Q+ Sbjct: 28 NPVLRKVAQPLTFPLSDHYKQLAKDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVDESVQ 87 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110 + L+V D + + K F+NP+II+ S EG CLS+ D D V R + Sbjct: 88 MASLLVPDDKGNILFKE--TFVNPEIISESVRKVCLSEGEGCLSV-DKEIDGYVPRPDKL 144 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 145 TIHYFTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 186 >gi|184155771|ref|YP_001844111.1| peptide deformylase [Lactobacillus fermentum IFO 3956] gi|183227115|dbj|BAG27631.1| polypeptide deformylase [Lactobacillus fermentum IFO 3956] Length = 136 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 12/136 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +L++ +RP + + + L + IG+AA IG ++ + L P Sbjct: 11 VLQQPARPATSADRQLAEALVATL-TAHQDHCIGMAANMIGFPVSIIAVSL-------GP 62 Query: 73 M--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + +NP+++ + + +EGCLS+ R+ R ITV Y D + + GL Sbjct: 63 VNVAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTGAQKELELTGLA 120 Query: 131 ATCLQHELDHLNGILF 146 A +QHE DHL GIL Sbjct: 121 AQAVQHECDHLRGILI 136 >gi|257064918|ref|YP_003144590.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] gi|256792571|gb|ACV23241.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] Length = 136 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 10/133 (7%) Query: 14 LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 LR S P + + +L+D + +S + +G+AA IGV R++V D HR Sbjct: 12 LRAPSSPATVADRSVGQDLMDTLR--FHSHECVGMAANMIGVAKRIIVFD-DAGTHR--- 65 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + NP+I S+ + +EGCLS+ R R I V + D + +G A Sbjct: 66 -LMYNPEITAKSEPYQT-EEGCLSLTGRRP-ATRYRRIEVTFRDERFASRTEAFEGWTAQ 122 Query: 133 CLQHELDHLNGIL 145 +QHE+DH NGI+ Sbjct: 123 IIQHEIDHCNGIV 135 >gi|238922278|ref|YP_002935792.1| hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750] gi|238873950|gb|ACR73658.1| Hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750] Length = 136 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 20/150 (13%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD---IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 MVKK I DP + ++ SD + +L+D ++ + +G+AA IGV Sbjct: 1 MVKK---IVKDPFFL-AQKSVDATESDKQVVTDLLDTLIANLDHC--VGMAANMIGVKKN 54 Query: 58 LVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++V+ P F INP I S ++ +EGCLS+ R R I V Y+ Sbjct: 55 IIVV-------AAGPFQFPMINPVITNKSGEYQT-EEGCLSLEGVRP-CTRYQDIEVDYL 105 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145 D N + Q G A +QHE+DH NG++ Sbjct: 106 DQNFKKQHRKYSGWTAQIIQHEIDHCNGVV 135 >gi|226322583|ref|ZP_03798101.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758] gi|225209077|gb|EEG91431.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758] Length = 136 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 8/104 (7%) Query: 43 DG-IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 DG +G+AA IGV ++ +++ N +F NPKI+ + + +EGCLS+ R Sbjct: 39 DGCVGMAANMIGVNKAIIAVNM----GFMNVAMF-NPKIVKRNGKYET-EEGCLSLDGVR 92 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 V R I V Y D N + Q G A +QHE DHLNGI+ Sbjct: 93 KCV-RYQEIKVEYEDINFKRQRQKYSGWTAQIIQHECDHLNGII 135 >gi|167757205|ref|ZP_02429332.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402] gi|237735710|ref|ZP_04566191.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167703380|gb|EDS17959.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402] gi|229381455|gb|EEO31546.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 137 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 8/118 (6%) Query: 28 IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87 + +L+D + + ++T +G+AA IG+ +++++ N +V +NP+II Sbjct: 27 VQDLLDTI--IAHATGCVGMAANMIGINKNIIIVN-----DDGNYLVMLNPEIIKTMGRL 79 Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +EGCLS + KR I V Y D + + +I A +QHE+DH NGIL Sbjct: 80 YETEEGCLSHIGVKK-TKRYEKIKVAYYDVDFKKKIKTFSNYTAQIIQHEIDHCNGIL 136 >gi|317488626|ref|ZP_07947169.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325831636|ref|ZP_08164853.1| peptide deformylase [Eggerthella sp. HGA1] gi|316912278|gb|EFV33844.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325486507|gb|EGC88956.1| peptide deformylase [Eggerthella sp. HGA1] Length = 136 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IG + R++ D + A+ + +NP+I++ + + +EGCLS+ R Sbjct: 42 VGMAANMIGEVKRIIAFD-NEGAY----LAMLNPEIVSRAGAYET-EEGCLSLAGTR-PA 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y D + ++ G A +QHE+DH NG+L Sbjct: 95 TRYRTIKVSYQDLAMKPRVKTFTGFTAQIIQHEIDHCNGVL 135 >gi|119025798|ref|YP_909643.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703] gi|118765382|dbj|BAF39561.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703] Length = 106 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 76 INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 +NP ++ + EGCLS+P +R+ + VR +D + + ++ G++ LQ Sbjct: 16 LNP-VLEEASGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGKPVVLEGHGIMGRMLQ 74 Query: 136 HELDHLNGILFIDHLSRLKRDMITKKM 162 HE DHL+G +++D L + +R + M Sbjct: 75 HETDHLDGHVYLDRLEKEERREAMRYM 101 >gi|167767071|ref|ZP_02439124.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1] gi|167711046|gb|EDS21625.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1] gi|291559591|emb|CBL38391.1| N-formylmethionyl-tRNA deformylase [butyrate-producing bacterium SSC/2] Length = 136 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 11/103 (10%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRA 102 +G+AA IGV ++V+ + P F INPKI S F +EGCLS+ R Sbjct: 42 VGMAANMIGVKKNIIVVAV-------GPFQFAMINPKITKKSGVFET-EEGCLSLDGVRP 93 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR I V Y+D + + Q G A +QHE+DH GI+ Sbjct: 94 -CKRYKEIEVDYLDQDFKEQHGKYSGWTAQIIQHEIDHCKGIV 135 >gi|257063393|ref|YP_003143065.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] gi|256791046|gb|ACV21716.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] Length = 140 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 14/144 (9%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVV-IDLQ 64 ++ D IL S+P ++ ++ +++++++ + S + GLAA QIG R+VV +D++ Sbjct: 5 IVTDDEIL---SKPCDEGTAEDAAIVEDLIDTLKSLETAAGLAANQIGETKRIVVYLDMK 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NAQ--H 121 D NP NP +I + + S E CLS VKR A I V Y + N Q Sbjct: 62 D-----NPHAMFNP-VIKMALNPSTVAEECLSHEGQYVTVKRFAKINVAYQELINGQLVD 115 Query: 122 QIIYADGLLATCLQHELDHLNGIL 145 + +G A +QH +DH NG L Sbjct: 116 RKRKFEGWTAQVIQHLVDHCNGKL 139 >gi|320546940|ref|ZP_08041241.1| peptide deformylase [Streptococcus equinus ATCC 9812] gi|320448342|gb|EFW89084.1| peptide deformylase [Streptococcus equinus ATCC 9812] Length = 136 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R +++++ ++ NP + S F +E CLS+ R+ Sbjct: 42 VGMAANMIGVKKRAIIVNMG-----LGDLIMFNPVMTNKSLPFDT-EESCLSLVGSRS-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R I V +MD N Q + GL A QHELDHL GI+ Sbjct: 95 RRYQKIDVTFMDKNWNKQSLTLTGLPAQICQHELDHLEGII 135 >gi|324017857|gb|EGB87076.1| conserved domain protein [Escherichia coli MS 117-3] Length = 48 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/44 (59%), Positives = 35/44 (79%) Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 2 ADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 45 >gi|325679773|ref|ZP_08159347.1| peptide deformylase [Ruminococcus albus 8] gi|324108588|gb|EGC02830.1| peptide deformylase [Ruminococcus albus 8] Length = 136 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 11/103 (10%) Query: 45 IGLAAVQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 +G+AA IG R+++ + D +V INP I+ + + +EGCLS+ R Sbjct: 42 VGMAANMIGYSKRIIIFTAGIMD-------IVMINPVIVKKARPYET-EEGCLSLTGVRK 93 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR ITV Y+D + + + G +A +QHE DHL+GI+ Sbjct: 94 -TKRWEMITVEYLDTSFKKKRGDFTGFVAQIIQHECDHLDGII 135 >gi|293375957|ref|ZP_06622217.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325841958|ref|ZP_08167535.1| peptide deformylase [Turicibacter sp. HGF1] gi|292645394|gb|EFF63444.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325489791|gb|EGC92146.1| peptide deformylase [Turicibacter sp. HGF1] Length = 136 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IG+ R++V + + PM INP I+ + V +E CLS+ +R + Sbjct: 42 VGMAANMIGIKKRIIVFAIGEIIV---PM--INPVIVKKEKSY-VTEESCLSLVGFR-ET 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y+D Q G +A +QHE+DH NGI+ Sbjct: 95 TRYETIEVEYLDKQFNKQKGTFTGFVAQIIQHEIDHCNGII 135 >gi|238925751|ref|YP_002939268.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|238877427|gb|ACR77134.1| peptide deformylase [Eubacterium rectale ATCC 33656] Length = 136 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 MVKK I DP+ +++ E D ++ ++L+ + + +G+AA IGV + Sbjct: 1 MVKK---IMRDPLF--LAQKSEDATEDDKQVVTDLLDTLKANLDHCVGMAANMIGVKKNI 55 Query: 59 VVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +V+ P F INP I S F +EGCLS+ R R I V Y+D Sbjct: 56 IVV-------AAGPFQFAMINPVITGKSGAFQT-EEGCLSLDGVRP-CTRYKEIEVDYLD 106 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGIL 145 N + + G A +QHE+DH NG++ Sbjct: 107 QNFKKKHGKYTGWTAQIIQHEVDHCNGVV 135 >gi|150018336|ref|YP_001310590.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] gi|6014951|sp|O08450|DEF_CLOB8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2208948|emb|CAB09662.1| formylmethionine deformylase [Clostridium beijerinckii] gi|149904801|gb|ABR35634.1| formylmethionine deformylase [Clostridium beijerinckii NCIMB 8052] Length = 136 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 22 EKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79 E+ + M +ID++++ + + +GLAA IGV R++V + + PM INP Sbjct: 17 EEATKNDMVVIDDLIDTLRANLEHCVGLAANMIGVKKRILVFTVGNLIV---PM--INPV 71 Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 I+ + +E CLS+ +R KR I V Y+D N + +G A +QHE+D Sbjct: 72 ILKKEKPYET-EESCLSLIGFRK-TKRYETIEVTYLDRNFNKKKQVFNGFTAQIIQHEMD 129 Query: 140 HLNGIL 145 H GI+ Sbjct: 130 HFEGII 135 >gi|213691471|ref|YP_002322057.1| formylmethionine deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522932|gb|ACJ51679.1| formylmethionine deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457544|dbj|BAJ68165.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 139 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 4/101 (3%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++V +D R V NP +IT SD QEGCLS+ R + Sbjct: 42 VGMAANMIGVGKRIIVFVDEDLGGRIT--VMFNP-VITASDGAFDAQEGCLSLTGERRTL 98 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y D + + G A +QHE+DH NGI+ Sbjct: 99 -RYRRIEVNYEDRRFRARHATFAGWTAQIIQHEVDHCNGII 138 >gi|171778277|ref|ZP_02919483.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282977|gb|EDT48401.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 136 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 IG+AA IGV R++++++ +V NP + S F +E CLS+ R Sbjct: 42 IGMAANIIGVKKRVIIVNMG-----LADLVMFNPVMTNKSLPFDT-EESCLSLLGSRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R I V +MD N Q + GL A QHELDHL GI+ Sbjct: 95 RRYQKIDVTFMDKNWNKQSLTLTGLAAQICQHELDHLEGII 135 >gi|306833720|ref|ZP_07466847.1| peptide deformylase [Streptococcus bovis ATCC 700338] gi|304424490|gb|EFM27629.1| peptide deformylase [Streptococcus bovis ATCC 700338] Length = 136 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R +++++ +V NP ++ S F +E CLS+ R Sbjct: 42 VGMAANMIGVKKRAIIVNMG-----VADLVMFNPVLLNKSLPFDT-KESCLSLTGARP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R I V ++D N Q + GL A QHELDHL G++ Sbjct: 95 RRYQKIEVAFLDKNWSQQTLTLTGLPAQICQHELDHLEGVI 135 >gi|251781139|ref|ZP_04824059.1| polypeptide deformylase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085454|gb|EES51344.1| polypeptide deformylase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 136 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R++V K + +NP I+ + +E CLS+ +R Sbjct: 42 VGLAANMIGVKKRILVF-----VAGKVIIPMVNPVILKKEKIYET-EESCLSLTGFRK-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR I V+Y+D N + + G +A +QHE+DH GI+ Sbjct: 95 KRYEIIEVQYLDKNFKKKKQVFTGFVAQIIQHEMDHFEGII 135 >gi|171920852|ref|ZP_02932018.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178960|ref|ZP_02964717.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024017|ref|ZP_02996776.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518292|ref|ZP_03003815.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524344|ref|ZP_03004376.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867842|ref|ZP_03079842.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273805|ref|ZP_03206339.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550531|ref|ZP_03771480.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551646|ref|ZP_03772592.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903056|gb|EDT49345.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209237|gb|EDU06280.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019044|gb|EDU57084.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998001|gb|EDU67098.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659819|gb|EDX53199.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660539|gb|EDX53796.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249560|gb|EDY74342.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379461|gb|EEH01826.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379685|gb|EEH02047.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 198 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 32/173 (18%) Query: 5 PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAA 49 P IF P P+LR V++ I+ +++ D + + M ++V Y GI +AA Sbjct: 18 PQWIFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAA 77 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRS 107 Q+G R I D + ++ + INP I S + EGCLS+ D RS Sbjct: 78 NQVGWNKRATYIHFDD-GNEEHHYLLINPHITKRSSQRAYLNPGEGCLSV-----DHDRS 131 Query: 108 AFITVRYMDCNAQ------HQIIYAD--GLLATCLQHELDHLNGILFIDHLSR 152 ++ +RY + + Q I + G++A C+QHE+ HL+ L+ D++++ Sbjct: 132 GYV-IRYEKVHVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNINQ 183 >gi|188588885|ref|YP_001921872.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43] gi|188499166|gb|ACD52302.1| polypeptide deformylase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 136 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IGV R++V K + +NP I+ + +E CLS+ +R Sbjct: 42 VGLAANMIGVKKRILVF-----VAGKVIIPMVNPVILKKEKIYET-EESCLSLTGFR-KT 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR I V+Y+D N + + G +A +QHE+DH GI+ Sbjct: 95 KRYEIIEVQYLDKNFKKKKQVFTGFVAQIIQHEMDHFEGII 135 >gi|254520028|ref|ZP_05132084.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA] gi|226913777|gb|EEH98978.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA] Length = 136 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 9/117 (7%) Query: 31 LIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88 +ID++++ + + +G+AA IGV R++V + D PMV NP I+ D Sbjct: 26 VIDDLVDTLRANLEQCVGMAANMIGVKKRILVFSIGDII---VPMV--NPVIVK-KDKVY 79 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +E CLS+ +R ++ A I V Y+D N + G A +QHE+DH GI+ Sbjct: 80 EAEESCLSLSGFRKTMRYEA-IEVEYLDRNFKKHKQTFTGFTAQVIQHEIDHFEGII 135 >gi|164687438|ref|ZP_02211466.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM 16795] gi|164603212|gb|EDQ96677.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM 16795] Length = 137 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%) Query: 25 NSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF 83 S + +L+D + + DG +GLAA IG R++V + A PM INP I+ Sbjct: 24 KSIVTDLVDTL---KANLDGCVGLAANMIGFKKRILVFTV--GAGMIVPM--INPVILKK 76 Query: 84 SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 + + +E CLS+ +R R I V+++D N + + G +A +QHE+DH G Sbjct: 77 EKPY-LTEESCLSLEGFR-QTTRYETIEVKFLDANFKEKTQVFTGFVAQIIQHEMDHFEG 134 Query: 144 IL 145 I+ Sbjct: 135 II 136 >gi|228477893|ref|ZP_04062507.1| polypeptide deformylase [Streptococcus salivarius SK126] gi|228250383|gb|EEK09623.1| polypeptide deformylase [Streptococcus salivarius SK126] Length = 136 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++++++ +V NP +++ S F +E CLS+ R Sbjct: 42 LGMAANMIGVKKRVIIVNIGFVN-----LVMFNPILVSKSSPFQT-EESCLSLEGSRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR I V Y+D + + G+ A +QHELDHL GI+ Sbjct: 95 KRYESIEVAYLDEQWMPKQLSFSGMPAQIIQHELDHLEGII 135 >gi|225026504|ref|ZP_03715696.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353] gi|224956192|gb|EEG37401.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353] Length = 136 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L++ + P K D M ++ ++L+ + + T +G+AA IGV R++ +++ A+ Sbjct: 12 LKKKAVPATK---DDMPVVQDLLDTLKANETGCVGMAANMIGVNKRIIAVNM-GFAN--- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + +NP I++ + + +EGCLS+ R R I V Y D + + Q G +A Sbjct: 65 -IAMLNPVIVSKKEPYEA-EEGCLSLKGVRKTT-RYQEIEVEYEDIHFKKQHQKYKGWVA 121 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH GI+ Sbjct: 122 QIIQHEVDHCEGIII 136 >gi|225870619|ref|YP_002746566.1| peptide deformylase [Streptococcus equi subsp. equi 4047] gi|225700023|emb|CAW94040.1| peptide deformylase [Streptococcus equi subsp. equi 4047] Length = 136 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 10/145 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+KK ++ L++ ++P K + I + + L Y +GLAA IG R+++ Sbjct: 1 MIKK--IVKDTFFLQQKAQPATKKDLWIGQDLQDTL-AYYRDSCLGLAANMIGENKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + +V NP +I + F +E CLS+ R KR I V Y+D + Sbjct: 58 ISMGF-----VDLVMFNPVLIAKREAFEA-EESCLSLIGQR-KTKRYQEIKVDYLDAHWH 110 Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145 + + GL A QHELDHL GIL Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGIL 135 >gi|300854809|ref|YP_003779793.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300434924|gb|ADK14691.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 136 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 12/139 (8%) Query: 12 PILRRV---SRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDH 66 PI++ V + E+ M + D++++ + + + +GLA IGV R++V + + Sbjct: 4 PIVKDVLFLGQKSEEATKKDMAVADDLMDTLRANLQNCVGLAGNMIGVRKRILVFTVGNL 63 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 PM INP I+ + +E CLS+ R KR I V Y+D N ++Q Sbjct: 64 IV---PM--INPVILKKEKPYET-EESCLSLIGVRK-TKRYEMIEVEYLDRNFKNQKQVF 116 Query: 127 DGLLATCLQHELDHLNGIL 145 G A +QHE+DH GI+ Sbjct: 117 TGFTAQIIQHEMDHFEGII 135 >gi|194466630|ref|ZP_03072617.1| formylmethionine deformylase [Lactobacillus reuteri 100-23] gi|194453666|gb|EDX42563.1| formylmethionine deformylase [Lactobacillus reuteri 100-23] Length = 136 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 12/135 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +L + + P K + + N + + L V + + +G+AA IGV ++ R P Sbjct: 11 LLGKKAIPTTKADLPLANDLIDTLNV-HQAECVGMAANMIGVNKNAIIA-------RIGP 62 Query: 73 --MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +V NP+II S + EGCLS+ R KR ITV + + + Q Q + Sbjct: 63 FNVVMFNPQIIAKSHPYQTA-EGCLSLSGTRP-TKRYKQITVNFRNQSWQMQTLELTDFA 120 Query: 131 ATCLQHELDHLNGIL 145 A +QHE+DH NGI+ Sbjct: 121 AEIVQHEIDHCNGII 135 >gi|23466247|ref|NP_696850.1| peptide deformylase [Bifidobacterium longum NCC2705] gi|189440729|ref|YP_001955810.1| peptide deformylase [Bifidobacterium longum DJO10A] gi|322689813|ref|YP_004209547.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] gi|322691751|ref|YP_004221321.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|23326994|gb|AAN25486.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189429164|gb|ACD99312.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|320456607|dbj|BAJ67229.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320461149|dbj|BAJ71769.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] Length = 139 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 P E +I+++++ + + +G+AA IGV R++V +D R V +N Sbjct: 15 PSEAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRIT--VMLN 72 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 P +IT SD QEGCLS+ R + R I V Y + + + G A +QHE Sbjct: 73 P-VITASDGAFDTQEGCLSLTGERRTL-RYRRIEVNYENRRFRARHATFAGWTAQIIQHE 130 Query: 138 LDHLNGIL 145 +DH NGI+ Sbjct: 131 VDHCNGII 138 >gi|307720000|ref|YP_003891140.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] gi|306978093|gb|ADN08128.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] Length = 269 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 5/160 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K ++ +P + N ++ +LI ++ + + + + L+A QIG Y ++VI Sbjct: 3 KEIIKYPTTPSLEFGANVRHFNQELFDLIKDLKDTIEANNLDALSAFQIGSPYAVIVIKK 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D + INP+II + E P A KR I + Y D +A Q Sbjct: 63 DDGEF----LELINPRIIKREGTITPV-ESTAYFPGLSAKTKRYEKIKLMYEDRDANQQF 117 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + A+G LA +Q +LD++ G F L +R ++ K+ Sbjct: 118 LEAEGDLAVTIQRKLDYVFGSNFRVRLDDNERKLLDSKLE 157 >gi|227546595|ref|ZP_03976644.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212912|gb|EEI80791.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516343|emb|CBK69959.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. longum F8] Length = 134 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 P E +I+++++ + + +G+AA IGV R++V +D R V +N Sbjct: 10 PSEAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGR--ITVMLN 67 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 P +IT SD QEGCLS+ R + R I V Y + + + G A +QHE Sbjct: 68 P-VITASDGAFDTQEGCLSLTGERRTL-RYRRIEVNYENRRFRARHATFAGWTAQIIQHE 125 Query: 138 LDHLNGIL 145 +DH NGI+ Sbjct: 126 VDHCNGII 133 >gi|313678726|ref|YP_004056466.1| peptide deformylase [Mycoplasma bovis PG45] gi|312950135|gb|ADR24730.1| peptide deformylase [Mycoplasma bovis PG45] Length = 186 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 76/165 (46%), Gaps = 20/165 (12%) Query: 6 LVIFPDPILRR--VSRPIEKINSDI-------MNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 LV P +LR+ V+ PI N DI ++ D+ E G+G+AAVQ GVL Sbjct: 8 LVKLPKKVLRQKSVNVPIPLSNEDIELAEKMIYHIDDSQKEGSKFQAGVGVAAVQYGVLK 67 Query: 57 RLVVI----DLQDHAHRKNPMVFINPKIITFSDD-FSVYQ-EGCLS----IPDYRADVKR 106 R+ I D+ D VF NP +I S+ ++ Q EGCLS I + V R Sbjct: 68 RVFYINVTEDMVDDKKYALRDVFFNPVVIAKSESKIALSQGEGCLSVGRNIKNQSGAVYR 127 Query: 107 SAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 I + Y + + A QHELDHL+G LFID + Sbjct: 128 HKRIVIEAYSYFEKKVKRYDLKDYPAIVAQHELDHLDGKLFIDRI 172 >gi|46190479|ref|ZP_00206479.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] Length = 128 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 P E +I+++++ + + +G+AA IGV R++V +D R V +N Sbjct: 4 PSEAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGR--ITVMLN 61 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 P +IT SD QEGCLS+ R + R I V Y + + + G A +QHE Sbjct: 62 P-VITASDGAFDTQEGCLSLTGERRTL-RYRRIEVNYENRRFRARHATFAGWTAQIIQHE 119 Query: 138 LDHLNGIL 145 +DH NGI+ Sbjct: 120 VDHCNGII 127 >gi|260221951|emb|CBA31028.1| hypothetical protein Csp_C26500 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 48 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/39 (61%), Positives = 31/39 (79%) Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHL G +F+++LS LKR+ I KM K Sbjct: 3 ADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIK 41 >gi|284048313|ref|YP_003398652.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731] gi|283952534|gb|ADB47337.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731] Length = 136 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV ++V++L MV NP II + EGCLS+ R Sbjct: 42 VGMAANMIGVAKCIIVVNLG-----LMDMVMFNPTIIKQEGPYET-SEGCLSLSGER-KT 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V + D + + Q + G A +QHE+DHL GIL Sbjct: 95 TRYRKIQVEFQDMDFKKQTLEFTGFPAQIIQHEVDHLAGIL 135 >gi|42560770|ref|NP_975221.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492266|emb|CAE76863.1| Peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320698|gb|ADK69341.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 200 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYR 101 +GLAA QIGV + + Q ++ IN K+I+ S + + EGCLS+ +Y Sbjct: 74 AVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSVDNYH 133 Query: 102 AD-VKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R I V+ D Q+ + A QHE+DH G+L+ DH+++ Sbjct: 134 LGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|258513851|ref|YP_003190073.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] gi|257777556|gb|ACV61450.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] Length = 74 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ILR+ +R IEK + I+ + NM E MY+ + GLAA Q+ +L RLVVID+ Sbjct: 11 TNDILRKKTRTIEKFYNRILTSLKNMAETMYNANETGLAATQVAILRRLVVIDV 64 >gi|209554070|ref|YP_002284901.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541571|gb|ACI59800.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 198 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 32/173 (18%) Query: 5 PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAA 49 P IF P P+LR V++ I+ +++ D + + M ++V Y GI +AA Sbjct: 18 PQWIFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAA 77 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRS 107 Q+G R I D + + + INP I S + EGCLS+ D RS Sbjct: 78 NQVGWNKRATYIHFDD-GNEEYHYLLINPHITKRSSQRAYLNPGEGCLSV-----DHDRS 131 Query: 108 AFITVRYMDCNAQ------HQIIYAD--GLLATCLQHELDHLNGILFIDHLSR 152 ++ +RY + + Q I + G++A C+QHE+ HL+ L+ D++++ Sbjct: 132 GYV-IRYEKVHVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNINQ 183 >gi|187934485|ref|YP_001886878.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] gi|187722638|gb|ACD23859.1| polypeptide deformylase family protein [Clostridium botulinum B str. Eklund 17B] Length = 136 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLA IGV R++V K + +NP I+ + +E CLS+ +R Sbjct: 42 VGLAGNMIGVKKRILVF-----VAGKVIIPMVNPVILKKEKSYET-EESCLSLTGFRK-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 KR I V+Y+D N + + G +A +QHE+DH GI+ Sbjct: 95 KRYEIIEVQYLDKNFKKKKKVFTGFVAQIIQHEMDHFEGII 135 >gi|148544448|ref|YP_001271818.1| peptide deformylase [Lactobacillus reuteri DSM 20016] gi|184153812|ref|YP_001842153.1| peptide deformylase [Lactobacillus reuteri JCM 1112] gi|227363124|ref|ZP_03847259.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|325682770|ref|ZP_08162286.1| peptide deformylase [Lactobacillus reuteri MM4-1A] gi|148531482|gb|ABQ83481.1| formylmethionine deformylase [Lactobacillus reuteri DSM 20016] gi|183225156|dbj|BAG25673.1| polypeptide deformylase [Lactobacillus reuteri JCM 1112] gi|227071842|gb|EEI10130.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|324977120|gb|EGC14071.1| peptide deformylase [Lactobacillus reuteri MM4-1A] Length = 136 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 +L + + P K + + + + L + + +G+AA IGV ++ R P Sbjct: 11 LLAKKATPTTKADLPLATDLSDTLNA-HQAECVGMAANMIGVNKNAIIA-------RIGP 62 Query: 73 --MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +V NP+I+ S + EGCLS+ R KR ITV++ + + Q Q + Sbjct: 63 FNVVMFNPQIVAKSHPYQTT-EGCLSLSGTRP-TKRYKQITVKFRNQSWQVQTLELADFA 120 Query: 131 ATCLQHELDHLNGIL 145 A +QHE+DH NGI+ Sbjct: 121 AEIIQHEIDHCNGII 135 >gi|168204531|ref|ZP_02630536.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|170663898|gb|EDT16581.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] Length = 136 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 29 MNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 + +ID++++ + + +G+AA IGV R++V + + PMV NP I+ Sbjct: 24 IGIIDDLVDTLRANLESCVGMAANMIGVKKRILVFSIGNII---VPMV--NPVILKKEKS 78 Query: 87 FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 + +E CLS+ +R R I V Y+D N + G A +QHE+DH +GI+ Sbjct: 79 YET-EESCLSLTGFRK-TTRYEIIEVEYLDRNFKKHKETFSGFTAQIIQHEVDHFDGII 135 >gi|110798606|ref|YP_695205.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|168217422|ref|ZP_02643047.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] gi|110673253|gb|ABG82240.1| polypeptide deformylase [Clostridium perfringens ATCC 13124] gi|182380515|gb|EDT77994.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] Length = 136 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 29 MNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 + +ID++++ + + +G+AA IGV R++V + + PMV NP I+ Sbjct: 24 IGIIDDLVDTLRANLESCVGMAANMIGVKKRILVFSIGNII---VPMV--NPVILKKEKS 78 Query: 87 FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 + +E CLS+ +R R I V Y+D N + G A +QHE+DH +GI+ Sbjct: 79 YET-EESCLSLTGFRK-TTRYEIIEVEYLDRNFKKHKETFSGFTAQIIQHEVDHFDGII 135 >gi|323141001|ref|ZP_08075911.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] gi|322414538|gb|EFY05347.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] Length = 136 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 11/145 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++KP +I + L + S+P ++ + +L+D + ++ +GLAA IGV ++ Sbjct: 1 MEKP-IIKDEAFLAQKSQPATFMDIAVAQDLLDTL--AAHADRCVGLAANMIGVQKCVIA 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ + +NP+II S + + +EGCLS+ RA V R ITV Y D + Sbjct: 58 VNI-----GPTNIAMLNPEIIKRSGKY-MTEEGCLSLEGERAAV-RYEKITVAYQDMQFK 110 Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145 G A +QHE+DH +GI+ Sbjct: 111 KCKQSFSGFTAQIIQHEIDHCHGII 135 >gi|328468001|gb|EGF39025.1| peptide deformylase [Lactobacillus helveticus MTCC 5463] Length = 137 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Query: 42 TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 + +GLAA IG R++ + P + INPKI+ S + + +EGCLS+ R Sbjct: 40 SKAVGLAANMIGQSKRIIAFYIGSL-----PFMMINPKIVRKSGKY-MTEEGCLSLSGQR 93 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 V R ITV Y + + + +A +QHE+DH +GIL Sbjct: 94 QTV-RYKEITVTYQNLDFKEVTQDFSEFIAETIQHEVDHCDGIL 136 >gi|322517336|ref|ZP_08070211.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] gi|322124033|gb|EFX95586.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] Length = 136 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++++++ +V NP +++ S F +E CLS+ R Sbjct: 42 VGMAANMIGVKKRVIIVNIG-----FVNLVMFNPVLVSKSSPFQT-EESCLSLEGSRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R I V Y+D + + G+ A +QHELDHL GI+ Sbjct: 95 RRYESIEVAYLDEQWMLKQLNFSGMPAQIIQHELDHLEGII 135 >gi|297205664|ref|ZP_06923060.1| peptide deformylase [Lactobacillus jensenii JV-V16] gi|297150242|gb|EFH30539.1| peptide deformylase [Lactobacillus jensenii JV-V16] Length = 136 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 10/145 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+K+ +I + L+R S P K + I + + L+ +G+AA IG R+++ Sbjct: 1 MIKE--IIKDEMFLKRKSLPATKADLSIGRDLRDTLQA-NKERCVGMAANMIGYSKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP I+ + + V EGCLS+ R + R + V + D + Sbjct: 58 VNIGFF-----DVVMFNPVILERKNPYQV-SEGCLSLSGSR-NTLRFKEVKVAFFDEKWE 110 Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145 +Q + G A QHE+DHL GIL Sbjct: 111 NQELTLTGFAAEICQHEMDHLEGIL 135 >gi|224065146|ref|XP_002190853.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata] Length = 131 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 67 AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 AHR P V +NP + EGC SI + A V R + V +D Sbjct: 30 AHRIEPFPLRVLVNPALRILDSRLVTGPEGCASIHGFSAYVPRHWAVHVSGVDELGVPVS 89 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 A G A +QHE+DHL+GIL+ID + Sbjct: 90 WEASGWAARIIQHEMDHLDGILYIDRME 117 >gi|18309742|ref|NP_561676.1| peptide deformylase [Clostridium perfringens str. 13] gi|168214353|ref|ZP_02639978.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|169344411|ref|ZP_02865380.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|18144420|dbj|BAB80466.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|169297331|gb|EDS79440.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|170714200|gb|EDT26382.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] Length = 136 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 9/119 (7%) Query: 29 MNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 + +ID++++ + + +G+AA IGV R++V + + PMV NP I+ Sbjct: 24 IGIIDDLVDTLRANLESCVGMAANMIGVKKRILVFSIGNII---VPMV--NPVILKKEKS 78 Query: 87 FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 + +E CLS+ +R R I V Y+D N + G A +QHE+DH GI+ Sbjct: 79 YET-EESCLSLTGFRKTT-RYEIIEVEYLDRNFKKHKETFSGFTAQIIQHEVDHFEGII 135 >gi|318060496|ref|ZP_07979219.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG] Length = 426 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Query: 27 DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 +I ++D +L G+GL+A QIGV ++ A + +NP++I S + Sbjct: 297 EIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPWGAPA---VTLLNPRVIAGSRE 353 Query: 87 FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 + E C R ITVR LA + HE+DHL G+L Sbjct: 354 TAEEYESCPGRLGPGTPTSRPNEITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLLH 413 Query: 147 IDHL 150 HL Sbjct: 414 PPHL 417 >gi|182624168|ref|ZP_02951955.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] gi|177910784|gb|EDT73144.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] Length = 136 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 9/119 (7%) Query: 29 MNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 + +ID++++ + + +G+AA IGV R++V + + PMV NP I+ Sbjct: 24 IGIIDDLVDTLRANLESCVGMAANMIGVKKRILVFSIGNII---VPMV--NPVILKKEKS 78 Query: 87 FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 + +E CLS+ +R R I V Y+D N + G A +QHE+DH GI+ Sbjct: 79 YET-EESCLSLTRFRKTT-RYEIIEVEYLDRNFKKHKETFSGFTAQIIQHEVDHFEGII 135 >gi|149184142|ref|ZP_01862470.1| peptide deformylase [Bacillus sp. SG-1] gi|148848148|gb|EDL62470.1| peptide deformylase [Bacillus sp. SG-1] Length = 86 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 7/63 (11%) Query: 92 EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 EGCLS+ P Y V R + +T++ MD + I GL + +QHE+DHLNG++F Sbjct: 10 EGCLSVDRQVPGY---VPRYSRVTIKGMDIDGNPVKIRLKGLPSIVMQHEIDHLNGVMFY 66 Query: 148 DHL 150 DH+ Sbjct: 67 DHI 69 >gi|256852171|ref|ZP_05557557.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260661796|ref|ZP_05862707.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|282933528|ref|ZP_06338899.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|256615217|gb|EEU20408.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260547543|gb|EEX23522.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|281302342|gb|EFA94573.1| peptide deformylase [Lactobacillus jensenii 208-1] Length = 136 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+K+ +I + L+R S P K + I + + L+ +G+AA IG R+++ Sbjct: 1 MIKE--IIKDEMFLKRKSLPATKADLSIGRDLRDTLQA-NKERCVGMAANMIGYSKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP I+ + + V EGCLS+ R + R + V + D + Sbjct: 58 VNIGFF-----DVVMFNPVILERKNPYQV-SEGCLSLSGSR-NTLRFKEVKVAFFDEKWE 110 Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145 Q + G A QHE+DHL GIL Sbjct: 111 KQELTLTGFAAEICQHEMDHLEGIL 135 >gi|169334954|ref|ZP_02862147.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM 17244] gi|169257692|gb|EDS71658.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM 17244] Length = 158 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 20/152 (13%) Query: 4 KPLVIFPDPILRRVSRPIEK--------INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 K +++ +P L +VS+ +++ I D+ + + N +V + G +AA QIG+ Sbjct: 3 KEILLLGNPNLYKVSKEVKEEEIQLLKNIEIDLHDTLMNYRKVHGA--GRAIAAPQIGIE 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRY 114 R++ +++ P++ +NPK +TF D + + C+S P+ V+R + Y Sbjct: 61 KRILYMNID------KPILIVNPK-LTFPDSEKIQVMDDCMSFPNLTVKVERYKNCILNY 113 Query: 115 MDCN-AQHQIIYADGLLATCLQHELDHLNGIL 145 D N + ++I D L+ +QHE DHL+GIL Sbjct: 114 KDRNFSDCKMILKDD-LSELIQHEYDHLDGIL 144 >gi|55820518|ref|YP_138960.1| peptide deformylase [Streptococcus thermophilus LMG 18311] gi|55822406|ref|YP_140847.1| peptide deformylase [Streptococcus thermophilus CNRZ1066] gi|55736503|gb|AAV60145.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311] gi|55738391|gb|AAV62032.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066] Length = 136 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++++++ +V NP +++ S F +E CLS+ R Sbjct: 42 VGMAANMIGVKKRVIIVNIGFVN-----LVMFNPVLVSKSSSFQT-EESCLSLEGSRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R I V Y+D + + G+ + +QHELDHL G++ Sbjct: 95 RRYESIEVAYLDERWMPKQLSFSGMPSQIIQHELDHLEGVI 135 >gi|116627328|ref|YP_819947.1| peptide deformylase [Streptococcus thermophilus LMD-9] gi|116100605|gb|ABJ65751.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus LMD-9] gi|312277834|gb|ADQ62491.1| Peptide deformylase [Streptococcus thermophilus ND03] Length = 136 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++++++ +V NP +++ S F +E CLS+ R Sbjct: 42 VGMAANMIGVKKRVIIVNIG-----FVNLVMFNPVLVSKSSSFQT-EESCLSLEGSRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R I V Y+D + + G+ + +QHELDHL G++ Sbjct: 95 RRYESIEVAYLDERWMPKQLSFSGMPSQIIQHELDHLEGVI 135 >gi|153855447|ref|ZP_01996578.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814] gi|149752101|gb|EDM62032.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814] Length = 136 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 10/133 (7%) Query: 14 LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 L + S P + + + ++L+D + + +G+AA IGV ++ +++ N Sbjct: 12 LNQRSEPATEADKQVAVDLLDTLK--AHEEGCVGMAANMIGVKKCIIAVNM----GFMNV 65 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 +F NPKI+ S + +EGCLS+ R R I V Y D N + Q G A Sbjct: 66 AMF-NPKIVKRSGKYET-EEGCLSLTGVR-KCTRYQEIEVEYQDMNFKKQRQKYTGWTAQ 122 Query: 133 CLQHELDHLNGIL 145 +QHE+DH +GI+ Sbjct: 123 IIQHEVDHCHGIV 135 >gi|168209867|ref|ZP_02635492.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|170712027|gb|EDT24209.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] Length = 136 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++V + + PMV NP I+ + +E CLS+ +R Sbjct: 42 VGMAANMIGVKKRILVFSIGNII---VPMV--NPVILKKEKSYET-EESCLSLTGFRK-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y+D N + G A +QHE+DH +GI+ Sbjct: 95 TRYEIIEVEYLDRNFKKHKETFSGFTAQIIQHEVDHFDGII 135 >gi|300121292|emb|CBK21672.2| unnamed protein product [Blastocystis hominis] Length = 283 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 16/152 (10%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYS---TDGIGLAAVQIGVLYRLVVI------ 61 + +LR+ R I+ SD M D + M++ + G++A Q+ R+ VI Sbjct: 18 EKVLRQKCRLIKDPTSDEMQ--DFAMNAMFTCIRNNAFGVSAPQLYRPIRMFVIRDYSTV 75 Query: 62 ----DLQDHAHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L H P M + NP+I + S E CLS P A V R I + Y+D Sbjct: 76 PDPSQLSAEQHMSLPLMPYFNPRIESRSRKLMGEFESCLSDPWNVAFVARPHTIGISYID 135 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID 148 ++Q G A QHE DHL G D Sbjct: 136 GFGKYQEKEISGWEAQVFQHEYDHLEGKTMAD 167 >gi|83319871|ref|YP_424193.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283757|gb|ABC01689.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 200 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DY 100 +GLAA QIGV + + Q ++ IN K+I+ S + + EGCLS+ D+ Sbjct: 74 AVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSVDNDH 133 Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R I V+ D Q+ + A QHE+DH GIL+ DH+++ Sbjct: 134 LGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGILYYDHINK 186 >gi|225376046|ref|ZP_03753267.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM 16841] gi|225212066|gb|EEG94420.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM 16841] Length = 136 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRA 102 +G+AA IGV ++V+ P F INP I F +EGCLS+ R Sbjct: 42 VGMAANMIGVSKNIIVV-------AAGPFQFAMINPVITKKMGTFQT-EEGCLSMDGVRP 93 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y+D N + Q G A +QHE+DH NGI+ Sbjct: 94 -CTRYKEIEVDYLDTNFKKQHGKYTGWTAQIIQHEIDHCNGIV 135 >gi|294790517|ref|ZP_06755675.1| peptide deformylase [Scardovia inopinata F0304] gi|294458414|gb|EFG26767.1| peptide deformylase [Scardovia inopinata F0304] Length = 230 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 68/169 (40%), Gaps = 27/169 (15%) Query: 5 PLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR V+ + + L M M + G+GLA QIG+ L V+ Sbjct: 30 PIVQMGEPVLRLKTVAYCGQLKPKTLEQLKKVMRRTMLNAPGVGLAGPQIGLGLSLAVV- 88 Query: 63 LQDH---------------AHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD 99 +DH A +P + INP D + + EGCLS Sbjct: 89 -EDHIRDLSDDEQAEADEAAASADPRGIADFPFHIIINPWYEPMDDASASFFEGCLSFDG 147 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 Y+A KR I + D +A A QHE DHL G ++ID Sbjct: 148 YQAVRKRWLNIKAHWFDEDAVEHEAELHQWPARIFQHETDHLKGEVYID 196 >gi|154484915|ref|ZP_02027363.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC 27560] gi|149733868|gb|EDM49987.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC 27560] Length = 136 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 22/151 (14%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 MVKK ++ I R ++P K + +D+M+ + E+ +G+AA IGV Sbjct: 1 MVKK--IVKGKQIFARKAQPATKADKQVVTDLMDTLRENREIC-----VGMAANMIGVNK 53 Query: 57 RLVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++V+ P F +NP I S +++ +EGCLS+ R + R I V Y Sbjct: 54 SIIVVAA-------GPFQFAMVNPVITKKSGEYTT-EEGCLSLDGVRNCI-RYKEIEVDY 104 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 ++ N + + G A +QHE+DH NG++ Sbjct: 105 LNENFEPKHGKFSGYTAQIIQHEVDHCNGVV 135 >gi|317057111|ref|YP_004105578.1| formylmethionine deformylase [Ruminococcus albus 7] gi|315449380|gb|ADU22944.1| formylmethionine deformylase [Ruminococcus albus 7] Length = 136 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 12/134 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--DLQDHAHRKN 71 L++ S +K + DI+ + + L+ + +G+AA IG R+++ + D Sbjct: 12 LKKKSIKADKNDVDIITDLRDTLKANHDR-CVGMAANMIGFNKRIIIFTAGIMD------ 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V INP I+ + + +EGCLS+ R KR ITV Y D + + G +A Sbjct: 65 -IVMINPVIVKKAQPYET-EEGCLSLTGVRK-TKRWEKITVEYQDTSFNKKRGDFTGFVA 121 Query: 132 TCLQHELDHLNGIL 145 +QHE DHL GI+ Sbjct: 122 QIIQHECDHLEGII 135 >gi|302672051|ref|YP_003832011.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316] gi|302396524|gb|ADL35429.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316] Length = 136 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 20/150 (13%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYR 57 MVK+ I DP L++ S P + + + I ++L+ + + +G+AA IGV R Sbjct: 1 MVKQ---IVKDPFFLQQKSEPATEADKQV---IQDLLDTLRANQDRCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++V+ + P F +NP+I S ++ +E CLS+ R R I V Y+ Sbjct: 55 IIVVAM-------GPFHFAMVNPEITKKSGEYQT-EESCLSLEGVRP-CTRYKEIEVDYL 105 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145 D + + Q A +QHE+DH GIL Sbjct: 106 DQDFKPQHGKYKDFTAQIIQHEIDHFEGIL 135 >gi|313885254|ref|ZP_07819006.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] gi|312619945|gb|EFR31382.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] Length = 136 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 12/134 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L + ++P K + ++ + + L+ + +G+AA IG+ ++++ + P+ Sbjct: 12 LSQKAKPATKEDQAVIQDLKDTLKA-HRHHCVGMAANMIGINKAIIIVAM-------GPL 63 Query: 74 --VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V +NP+I + + + QEGCLS + +R I V+Y+D + + G LA Sbjct: 64 DLVMVNPEITSQAKPYQT-QEGCLSHTGQKP-TQRYQEIQVQYLDEHFHPKNRRFQGPLA 121 Query: 132 TCLQHELDHLNGIL 145 +QHE+DHL GIL Sbjct: 122 QVIQHEMDHLAGIL 135 >gi|290977842|ref|XP_002671646.1| predicted protein [Naegleria gruberi] gi|284085216|gb|EFC38902.1| predicted protein [Naegleria gruberi] Length = 297 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 41/83 (49%) Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 ++I+PKI+ S + EGCLS + + RS I V Y++ Q DG A Sbjct: 192 LYIDPKIVDKSVEMEREVEGCLSFKNEYLFLMRSKEIEVEYINMFGVKQRKTLDGFSARV 251 Query: 134 LQHELDHLNGILFIDHLSRLKRD 156 QHE DHL GI D + K+D Sbjct: 252 FQHEFDHLEGINMFDRVVDKKKD 274 >gi|312864304|ref|ZP_07724538.1| peptide deformylase [Streptococcus vestibularis F0396] gi|311100305|gb|EFQ58514.1| peptide deformylase [Streptococcus vestibularis F0396] Length = 136 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++++++ +V NP +++ S F +E CLS+ R Sbjct: 42 VGMAANMIGVKKRVIIVNIG-----FVNLVMFNPVLVSKSSLFQT-EESCLSLEGSRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +R I V Y+D + + G+ A +QHELDHL GI+ Sbjct: 95 RRYESIEVAYLDEQWMLKQLNFSGMPAQIIQHELDHLEGII 135 >gi|331703218|ref|YP_004399905.1| peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801773|emb|CBW53926.1| Peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 200 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DY 100 +GLAA QIGV + + Q ++ IN K+I+ S + + EGCLS+ D+ Sbjct: 74 AVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSVDNDH 133 Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R I V+ D Q+ + A QHE+DH G+L+ DH+++ Sbjct: 134 LGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|333026448|ref|ZP_08454512.1| putative formylmethionine deformylase [Streptomyces sp. Tu6071] gi|332746300|gb|EGJ76741.1| putative formylmethionine deformylase [Streptomyces sp. Tu6071] Length = 434 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 27 DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 +I ++D +L G+GL+A QIGV ++ A + +NP +I S + Sbjct: 295 EIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPWGAPA---VTLLNPCVIAGSRE 351 Query: 87 FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 + E C R R ITVR LA + HE+DHL G+L Sbjct: 352 TAEEYESCPGRSGPRTPTSRPNEITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLL- 410 Query: 147 IDHLSRL 153 H RL Sbjct: 411 --HPPRL 415 >gi|319939828|ref|ZP_08014184.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] gi|319811041|gb|EFW07356.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] Length = 136 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++++ + P++ NP + S + +E CLS+ R Sbjct: 42 VGMAANMIGVQKRIIIL-----MYDVIPVIMFNPILKRKSSPYRA-EESCLSLAGSRL-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R ITV Y+D + + Q + A QHELDHL GIL Sbjct: 95 TRYKEITVEYLDQHWRKQTLTLKDFPAQICQHELDHLEGIL 135 >gi|238923534|ref|YP_002937050.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|238875209|gb|ACR74916.1| peptide deformylase [Eubacterium rectale ATCC 33656] Length = 136 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 18/147 (12%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +VK PL + + + P +++ +D+++ + L+ +G+AA IGV ++V Sbjct: 5 IVKDPLFLAQKSV--DATEPDKQVVTDLLDTLRANLD-----HCVGMAANMIGVKKNIIV 57 Query: 61 IDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + P F INP I S + +EGCLS+ R R I V Y+D + Sbjct: 58 V-------AAGPFQFAMINPVITKKSGAYQT-EEGCLSLEGVRP-CTRYQEIEVDYLDQS 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGIL 145 + Q G A +QHE+DH NGI+ Sbjct: 109 FKKQHGKYSGWTAQIIQHEIDHCNGIV 135 >gi|227543949|ref|ZP_03973998.1| peptide deformylase [Lactobacillus reuteri CF48-3A] gi|300909699|ref|ZP_07127160.1| peptide deformylase [Lactobacillus reuteri SD2112] gi|227186065|gb|EEI66136.1| peptide deformylase [Lactobacillus reuteri CF48-3A] gi|300893564|gb|EFK86923.1| peptide deformylase [Lactobacillus reuteri SD2112] Length = 136 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 7/106 (6%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 + + +G+AA IGV ++ + N ++F NP+I+ S + EGCLS+ Sbjct: 37 HQAECVGMAANMIGVNKNAIIARIGPF----NVLMF-NPQIVAKSHPYQTT-EGCLSLSG 90 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R KR ITV++ + + Q Q + A +QHE+DH NGI+ Sbjct: 91 TRP-TKRYKQITVKFRNQSWQVQTLELTDFAAEIIQHEIDHCNGII 135 >gi|256384123|gb|ACU78693.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384955|gb|ACU79524.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455689|gb|ADH21924.1| peptide deformylase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 200 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DY 100 +GLAA QIGV + + Q ++ IN K+I+ S + + EGCLS+ D+ Sbjct: 74 AVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSVDNDH 133 Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R I V+ D Q+ + A QHE+DH G+L+ DH+++ Sbjct: 134 LGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|161506686|ref|YP_001576636.1| peptide deformylase [Lactobacillus helveticus DPC 4571] gi|260101789|ref|ZP_05752026.1| peptide deformylase [Lactobacillus helveticus DSM 20075] gi|160347675|gb|ABX26349.1| Polypeptide deformylase [Lactobacillus helveticus DPC 4571] gi|260084400|gb|EEW68520.1| peptide deformylase [Lactobacillus helveticus DSM 20075] Length = 137 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 7/104 (6%) Query: 42 TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 + GLAA IG R++ + P + INPKI+ S + + +EGCLS+ R Sbjct: 40 SKAAGLAANMIGQSKRIIAFYIGSL-----PFMMINPKIVRKSGKY-MTEEGCLSLSGQR 93 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 V R ITV Y + + + +A +QHE+DH +GIL Sbjct: 94 QTV-RYKEITVTYQNLDFKEVTQDFSEFIAETIQHEVDHCDGIL 136 >gi|224010171|ref|XP_002294043.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220970060|gb|EED88398.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 549 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 17/115 (14%) Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADVKRSA 108 I + +L + Q + + +NP+I+ S + V+ E CL +P +RA + R A Sbjct: 266 IFAINKLSLTKQQPQREAEGGVFLVNPRIVHRSTESEMLVWTEECLVLPPVFRATLVRDA 325 Query: 109 FITVRYMD-------------CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +T+ Y C QI G LA C QHE+DH G+L +DH+ Sbjct: 326 EVTIEYESLETLDESSPGDSLCGVTKQITL-KGELARCAQHEMDHDRGVLIVDHV 379 >gi|307721460|ref|YP_003892600.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] gi|306979553|gb|ADN09588.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] Length = 272 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 5/148 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + ++ +P P+ + + + + LI+++ + + + L+A QIG Y +V++ Sbjct: 3 RTIIQYPTPLSVEYATDVRIFDETLFALIEDLKDTINENNLDALSAYQIGSYYNVVIV-- 60 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +D + M INP++I+ S + E PD A+++R I+V Y D N + Sbjct: 61 KDDSGEFIEM--INPRLISHSGTI-ITDEQTAYYPDKSAEIQRYDKISVVYQDRNGNDKS 117 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + A G + +Q ++D+ G F+ +S Sbjct: 118 MQASGEFSIRIQRKIDYTFGATFVQKMS 145 >gi|110004337|emb|CAK98675.1| putative peptide deformylase 2 protein [Spiroplasma citri] Length = 192 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 78/175 (44%), Gaps = 29/175 (16%) Query: 4 KPLVIFPD-PILRR----VSRPIEKINSDIMN-LIDNMLEVMYSTD-----------GIG 46 K ++F D P +R+ VS P+ N +M LID V YS D +G Sbjct: 8 KDWLVFDDTPSIRQSSIDVSLPLAPENELVMKKLIDF---VRYSQDPQKNSGHTIRPAVG 64 Query: 47 LAAVQIGV---LYRLVVIDLQDHAHRKN--PMVFINPKIITFSDDFSVYQEG--CLSI-P 98 LAA QIG +Y + + + D K INPKII S + +EG CLS+ Sbjct: 65 LAAPQIGFNIKMYYIRIEETNDETGFKKIIEHAMINPKIIGKSAQIACIEEGEGCLSVNG 124 Query: 99 DYRADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 D V RS I V D Q Q+ I A A QHE HL G L+ D +++ Sbjct: 125 DKEGFVPRSFRIIVEGYDYLKQQQVTITARSYEAIVFQHEEAHLEGKLYYDLINK 179 >gi|313665134|ref|YP_004047005.1| peptide deformylase [Mycoplasma leachii PG50] gi|312949522|gb|ADR24118.1| peptide deformylase [Mycoplasma leachii PG50] Length = 200 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DY 100 +GLAA QIGV + + Q ++ IN K+I+ S + + EGCLS+ D+ Sbjct: 74 AVGLAAPQIGVNKDIFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSVDNDH 133 Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R I V+ D Q+ + A QHE+DH G+L+ DH+++ Sbjct: 134 LGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|9957264|gb|AAG09295.1|AF177768_1 ORF260 [Trypanosoma brucei] gi|261335512|emb|CBH18506.1| polypeptide deformylase, putative [Trypanosoma brucei gambiense DAL972] Length = 260 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 5/98 (5%) Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110 + ++ ++ H + N V++NP + + D S+ E C+S A V R I Sbjct: 93 WDAAIVLIKGHPNEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQSI 152 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 T +D + DG+ A CL HELDHL+G +D Sbjct: 153 TCSGLDEYGNEKTEVLDGMRARCLMHELDHLSGKTILD 190 >gi|197301435|ref|ZP_03166515.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC 29176] gi|197299473|gb|EDY33993.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC 29176] Length = 136 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 16/143 (11%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYRLVVIDLQ 64 +I I R ++P + + +I + ++L+ + + I G+AA IG+ ++ + + Sbjct: 5 IIKGKKIFGRKAKPATEADQEI---VTDLLDTLRANREICVGMAANMIGINKSIIAVAV- 60 Query: 65 DHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 P F INP I S ++ +EGCLS+ R R I V Y+D N Q Sbjct: 61 ------GPFQFAMINPVITKMSGEYKT-EEGCLSLEGTRL-CTRYEEIEVDYLDSNFQFC 112 Query: 123 IIYADGLLATCLQHELDHLNGIL 145 G A +QHE+DH GI+ Sbjct: 113 HGKYSGWTAQIIQHEIDHCKGIV 135 >gi|195978210|ref|YP_002123454.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974915|gb|ACG62441.1| peptide deformylase Def [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 136 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 10/145 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+KK ++ L++ ++P K + I + + L Y +GLAA IG R+++ Sbjct: 1 MIKK--IVKDTFFLQQKAQPATKKDLWIGQDLQDTL-AYYRDSCLGLAANMIGENKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + +V NP + F +E CLS+ R KR I V Y+D + Sbjct: 58 VSMG-----FVDLVMFNPVLTAKRGAFEA-EESCLSLTGQRR-TKRYQEIKVDYLDTHWH 110 Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145 + + GL A QHELDHL GIL Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGIL 135 >gi|261338163|ref|ZP_05966047.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] gi|270276799|gb|EFA22653.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] Length = 152 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYS-TDG-IGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + +RP + N + + + ++ + + + +DG +G+AA IG ++V D Sbjct: 22 LAKPARPADPSNPEDLQIAQDLKDTLRAHSDGCVGMAANMIGEPVAIIV--FVDDEMGGG 79 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +NP+I T + + EGCLS+ RA V R+ +I V Y + + + +G A Sbjct: 80 ITTMLNPRITT-AQQYYETAEGCLSLDGERA-VTRAQYIEVDYDNTKGKPRHARFEGFTA 137 Query: 132 TCLQHELDHLNG 143 +QHE+DH G Sbjct: 138 QIIQHEVDHCLG 149 >gi|291524049|emb|CBK89636.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale DSM 17629] gi|291527891|emb|CBK93477.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale M104/1] Length = 136 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 11/103 (10%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRA 102 +G+AA IGV ++V+ P F INP I S F +EGCLS+ R Sbjct: 42 VGMAANMIGVKKNIIVV-------AAGPFQFAMINPVITGKSGAFQT-EEGCLSLDGVRP 93 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y+D N + + G A +QHE+DH NG++ Sbjct: 94 -CTRYKEIEVDYLDQNFKKKHGKYTGWTAQIIQHEVDHCNGVV 135 >gi|171741144|ref|ZP_02916951.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC 27678] gi|283455486|ref|YP_003360050.1| peptide deformylase [Bifidobacterium dentium Bd1] gi|306823442|ref|ZP_07456817.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|309802744|ref|ZP_07696848.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] gi|171276758|gb|EDT44419.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC 27678] gi|283102120|gb|ADB09226.1| fms Peptide deformylase [Bifidobacterium dentium Bd1] gi|304553149|gb|EFM41061.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|308220808|gb|EFO77116.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] Length = 141 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 7/136 (5%) Query: 12 PILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 P L + SR + + D + + + L+ + +G+AA IGV R++ +D R Sbjct: 10 PFLEQPSRDAQNTDEDFAVAQDLKDTLDA-HRNSCVGMAANMIGVSKRIIAFVDEDFGGR 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + NP+I F EGCLS+ R V R I V Y D + + G Sbjct: 69 --IFIMFNPEITARDGAFDT-SEGCLSLQGERHTV-RHQRIEVTYFDRKFRERHAAFTGF 124 Query: 130 LATCLQHELDHLNGIL 145 A +QHE+DH GI+ Sbjct: 125 TAQIIQHEVDHCAGII 140 >gi|162448037|ref|YP_001621169.1| peptide deformylase [Acholeplasma laidlawii PG-8A] gi|161986144|gb|ABX81793.1| peptide deformylase [Acholeplasma laidlawii PG-8A] Length = 192 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 8/114 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIPDYRA 102 +GLAA QI L R+ + ++D V INP+I+ T + + EGCLS+ + Sbjct: 56 VGLAAPQINELKRMFAMHVEDMDGTLYSYVMINPEIVGHTHEETYLPGGEGCLSVDRATS 115 Query: 103 DV-KRSAFITVR-----YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + R I VR + A+ + +G A QHE DHL+GI+F L Sbjct: 116 GLTPRYYGIMVRGYHLDFESLTAKPIELTLEGYPAIVFQHEYDHLDGIMFTSKL 169 >gi|74025884|ref|XP_829508.1| polypeptide deformylase [Trypanosoma brucei TREU927] gi|70834894|gb|EAN80396.1| polypeptide deformylase, putative [Trypanosoma brucei] Length = 260 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 5/98 (5%) Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110 + ++ ++ H + N V++NP + + D S+ E C+S A V R I Sbjct: 93 WDAAIVLIKGHPNEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQSI 152 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 T +D + DG+ A CL HELDHL+G +D Sbjct: 153 TCSGLDEYGNEKTEVLDGMRARCLMHELDHLSGRTILD 190 >gi|253579091|ref|ZP_04856362.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA] gi|251850034|gb|EES77993.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA] Length = 136 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 8/130 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L + S+P K + I + + L+ +G+AA IGV ++++++ + Sbjct: 12 LGQPSKPATKADIQIGKDLQDTLQANREW-CVGMAANMIGVRKNIIIVNM-----GFIDV 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP I++ D + +EGCLS+ R R I V Y D N + Q G A Sbjct: 66 VMFNPVIVSKHDMYET-EEGCLSLDGVRK-TTRYQEIEVEYYDFNWKKQRQKLSGWTAQI 123 Query: 134 LQHELDHLNG 143 QHE+DHL+G Sbjct: 124 CQHEIDHLSG 133 >gi|153811559|ref|ZP_01964227.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174] gi|149832300|gb|EDM87385.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174] Length = 136 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV ++++++ +V NP I++ D + +EGCLS+ R Sbjct: 42 VGMAANMIGVKKNIIIVNMGFI-----DVVMFNPVIVSKHDMYET-EEGCLSLDGVRK-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 R I V Y D N + Q G A QHE+DHL+G Sbjct: 95 TRYQEIEVEYYDFNWKKQRQKLSGWTAQICQHEIDHLSG 133 >gi|68068927|ref|XP_676374.1| formylmethionine deformylase [Plasmodium berghei strain ANKA] gi|56496040|emb|CAH95054.1| formylmethionine deformylase, putative [Plasmodium berghei] Length = 122 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 38/57 (66%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +VI+P+PILR+ S + + ++ NLI M + MY + GIGL+A Q+ + R++V + Sbjct: 62 IVIYPNPILRQKSEEVIYFDDNLKNLIRRMFKTMYESKGIGLSAPQVNINKRIIVWN 118 >gi|323465635|gb|ADX69322.1| Polypeptide deformylase [Lactobacillus helveticus H10] Length = 137 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 9/117 (7%) Query: 29 MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88 ++L D +L + GLAA IG R++ + P + INPKI+ S + Sbjct: 29 LDLCDTLL--ANRSKAAGLAANMIGQSKRIIAFYIGSL-----PFMMINPKIVRKSGKY- 80 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 + +EGCLS+ R V R ITV Y + + + A +QHE+DH +GIL Sbjct: 81 MTEEGCLSLSGQRQTV-RYKEITVTYQNLDFKEVTQDFSEFTAETIQHEVDHCDGIL 136 >gi|154486846|ref|ZP_02028253.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis L2-32] gi|154084709|gb|EDN83754.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis L2-32] Length = 141 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 5/135 (3%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHAHRK 70 P L + S E D+ D + +G +G+AA IGV R++ +D R Sbjct: 10 PFLSQPSAAAENTEEDLAVAQDLKDTLDAHRNGCVGMAANMIGVPKRIIAFVDEDFGGR- 68 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 V NP I F EGCLS+ R V R I V YMD + + G Sbjct: 69 -IFVMFNPHITAEDGAFDT-AEGCLSLQGERRTV-RYQRIEVDYMDRKFRERHAAFTGFT 125 Query: 131 ATCLQHELDHLNGIL 145 A +QHE+DH +G++ Sbjct: 126 AQIIQHEIDHCDGVI 140 >gi|207108487|ref|ZP_03242649.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1] Length = 77 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 39/55 (70%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 9 YPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINL 63 >gi|260589802|ref|ZP_05855715.1| peptide deformylase [Blautia hansenii DSM 20583] gi|331083229|ref|ZP_08332345.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|260539843|gb|EEX20412.1| peptide deformylase [Blautia hansenii DSM 20583] gi|330404618|gb|EGG84158.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 136 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV +++I++ ++ NP I+ + +EGCLS+ R V Sbjct: 42 VGMAANMIGVKKNIIIINMG-----FVDVLMFNPVIVKKDTPYET-EEGCLSLEGVRPAV 95 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y D N + Q G A QHE+DHL+GI+ Sbjct: 96 -RFQNIEVEYYDKNWKKQRQKLTGWTAQICQHEIDHLDGII 135 >gi|238855159|ref|ZP_04645481.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|260665536|ref|ZP_05866382.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|282932572|ref|ZP_06337994.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|313473142|ref|ZP_07813626.1| peptide deformylase [Lactobacillus jensenii 1153] gi|238832240|gb|EEQ24555.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|239528614|gb|EEQ67615.1| peptide deformylase [Lactobacillus jensenii 1153] gi|260560657|gb|EEX26635.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|281303320|gb|EFA95500.1| peptide deformylase [Lactobacillus jensenii 208-1] Length = 136 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IG R++++++ +V N I+ D + V EGCLS+ R + Sbjct: 42 VGMAANMIGYSKRVIIVNIGFL-----NVVMFNSVILERKDPYQV-SEGCLSLSGSR-NT 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R + V ++D ++Q + G A QHE+DHL GIL Sbjct: 95 LRFKEVKVAFLDEKWENQELTLTGFAAEICQHEMDHLEGIL 135 >gi|225868458|ref|YP_002744406.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus] gi|225701734|emb|CAW99099.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus] Length = 136 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 10/145 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+KK ++ L++ ++P K + I + + L Y +GLAA IG R+++ Sbjct: 1 MIKK--IVKDTFFLQQKAQPATKKDLWIGQDLQDTL-AYYRDSCLGLAANMIGENKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + +V NP + + F +E CLS+ R R I V Y+D + Sbjct: 58 VSMG-----FVDLVMFNPVLTAKREAFEA-EESCLSLTGQRR-TTRYQEIKVDYLDTHWH 110 Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145 + + GL A QHELDHL GIL Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGIL 135 >gi|153880447|ref|ZP_02004994.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS] gi|152063089|gb|EDN65006.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS] Length = 47 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/29 (68%), Positives = 26/29 (89%) Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKR 155 +G+LA C+QHE+DHLNG LF+D+LS LKR Sbjct: 4 EGVLAVCIQHEIDHLNGKLFVDYLSSLKR 32 >gi|297201621|ref|ZP_06919018.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] gi|197711008|gb|EDY55042.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] Length = 146 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 11/110 (10%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS-------DDFSVYQE 92 + G GLAA Q+GV RL V D D ++ +NP++ DD E Sbjct: 16 WPKAGAGLAANQVGVGLRLFVYDCPDDDEVRHVGHLVNPELDQLDPAGRRLLDD----SE 71 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 GCLS P V R R D + + +I G A C HE D N Sbjct: 72 GCLSGPGAVMAVPRPDRAGGRGFDRDGEPLVIEGTGYFAGCPAHETDTAN 121 >gi|227878034|ref|ZP_03996024.1| peptide deformylase [Lactobacillus crispatus JV-V01] gi|227862352|gb|EEJ69881.1| peptide deformylase [Lactobacillus crispatus JV-V01] Length = 143 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P V +NP+II + EGCLS+ R +V+R ITV Y + + +A Sbjct: 71 PFVMLNPRIIQ-KKQMYLASEGCLSLEGER-NVQRYEEITVTYQNMELETVTQTFGDFIA 128 Query: 132 TCLQHELDHLNGIL 145 +QHE+DH NGIL Sbjct: 129 ETIQHEIDHCNGIL 142 >gi|212716409|ref|ZP_03324537.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM 16992] gi|212660662|gb|EEB21237.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM 16992] Length = 141 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 4/101 (3%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++ +D R V NP IT D EGCLS+ R V Sbjct: 44 VGMAANMIGVSKRIIAFVDEDFGGR--IFVMFNP-TITAKDGAYDTSEGCLSLKGERRTV 100 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y D + + G A +QHE+DH GI+ Sbjct: 101 -RFQRIEVSYADRKFRERHATFTGFTAQIIQHEIDHCEGII 140 >gi|209363680|ref|YP_001423542.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|212217854|ref|YP_002304641.1| peptide deformylase [Coxiella burnetii CbuK_Q154] gi|207081613|gb|ABS76532.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|212012116|gb|ACJ19496.1| peptide deformylase [Coxiella burnetii CbuK_Q154] Length = 213 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%) Query: 46 GLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 G AA Q+G+ R++++ D P + +NP SD EGCLS+P Sbjct: 52 GFAAPQVGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGK 111 Query: 101 RADVKRSAFITVR----YMDCNAQHQII--YADGLLATCLQHELDHLNGILFID 148 V+R + + + D A +I Y + QHE+DHL G +++D Sbjct: 112 VGVVERYVHVELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVD 165 >gi|256849685|ref|ZP_05555117.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US] gi|262047729|ref|ZP_06020681.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] gi|293380519|ref|ZP_06626582.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|312977032|ref|ZP_07788781.1| peptide deformylase [Lactobacillus crispatus CTV-05] gi|256713801|gb|EEU28790.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US] gi|260571934|gb|EEX28502.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] gi|290922919|gb|EFD99858.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|310896360|gb|EFQ45425.1| peptide deformylase [Lactobacillus crispatus CTV-05] Length = 137 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P V +NP+II + EGCLS+ R +V+R ITV Y + + +A Sbjct: 65 PFVMLNPRIIQ-KKQMYLASEGCLSLEGER-NVQRYEEITVTYQNMELETVTQTFGDFIA 122 Query: 132 TCLQHELDHLNGIL 145 +QHE+DH NGIL Sbjct: 123 ETIQHEIDHCNGIL 136 >gi|223932640|ref|ZP_03624640.1| formylmethionine deformylase [Streptococcus suis 89/1591] gi|330832215|ref|YP_004401040.1| peptide deformylase [Streptococcus suis ST3] gi|223898750|gb|EEF65111.1| formylmethionine deformylase [Streptococcus suis 89/1591] gi|329306438|gb|AEB80854.1| peptide deformylase [Streptococcus suis ST3] Length = 136 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IG+ R++++++ +V NP +I+ + + +EGCLS+ R Sbjct: 42 VGMAANMIGIKKRIIIVNM-----GFTNLVMYNPVLISKAKPYQT-EEGCLSLEGTRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V ++D + + + A +QHELDHL GI+ Sbjct: 95 TRYQEIEVEFLDASWKKISLKLTDFQAQIVQHELDHLEGII 135 >gi|256843756|ref|ZP_05549243.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|295691921|ref|YP_003600531.1| peptide deformylase [Lactobacillus crispatus ST1] gi|256613661|gb|EEU18863.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|295030027|emb|CBL49506.1| Peptide deformylase [Lactobacillus crispatus ST1] Length = 137 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P V +NP+II + EGCLS+ R +V+R ITV Y + + +A Sbjct: 65 PFVMLNPRIIQ-KKQMYLASEGCLSLEGER-NVQRYEEITVTYQNMELETVTQTFGDFIA 122 Query: 132 TCLQHELDHLNGIL 145 +QHE+DH NGIL Sbjct: 123 ETIQHEIDHCNGIL 136 >gi|260881156|ref|ZP_05403747.2| peptide deformylase [Mitsuokella multacida DSM 20544] gi|260849662|gb|EEX69669.1| peptide deformylase [Mitsuokella multacida DSM 20544] Length = 139 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 6/101 (5%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IG ++ I + HA+ + +NP +I S + EGCLS+ R Sbjct: 44 VGLAANMIGERKCIIAIRV-GHAY----LAMLNPTVIRHSKEVYNVSEGCLSLDGERP-T 97 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R +I V Y D + Q A +QHE+DH GIL Sbjct: 98 TRYKWIEVEYRDLKFKKQKQVFRDFPAEIVQHEMDHCEGIL 138 >gi|225350925|ref|ZP_03741948.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158381|gb|EEG71623.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 141 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 4/101 (3%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++ +D R V NP IT D EGCLS+ R V Sbjct: 44 VGMAANMIGVSKRIIAFVDEDFGDR--IFVMFNP-TITAKDGAYDASEGCLSLKGERRTV 100 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y D + + G A +QHE+DH GI+ Sbjct: 101 -RFQRIEVSYADRKFRERHATFTGFTAQIIQHEIDHCEGII 140 >gi|161830302|ref|YP_001597698.1| peptide deformylase [Coxiella burnetii RSA 331] gi|161762169|gb|ABX77811.1| peptide deformylase [Coxiella burnetii RSA 331] Length = 209 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%) Query: 46 GLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 G AA Q+G+ R++++ D P + +NP SD EGCLS+P Sbjct: 48 GFAAPQVGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGK 107 Query: 101 RADVKRSAFITVR----YMDCNAQHQII--YADGLLATCLQHELDHLNGILFID 148 V+R + + + D A +I Y + QHE+DHL G +++D Sbjct: 108 VGVVERYVHVELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVD 161 >gi|169350971|ref|ZP_02867909.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552] gi|169292033|gb|EDS74166.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552] Length = 136 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IG +++VI+ D +V INP I + + EGCL + Sbjct: 42 VGMAANMIGYNKQIIVIENNDEY-----LVMINPSITKTTGKYET-NEGCLCHETLMPAL 95 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R ITV Y+D N + + A +QHE+DH NGIL Sbjct: 96 -RYHKITVEYLDLNFKKKTRTFKDYSAQIIQHEIDHCNGIL 135 >gi|153206215|ref|ZP_01945478.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177'] gi|165919286|ref|ZP_02219372.1| peptide deformylase [Coxiella burnetii RSA 334] gi|120577345|gb|EAX33969.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177'] gi|165917009|gb|EDR35613.1| peptide deformylase [Coxiella burnetii RSA 334] Length = 209 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%) Query: 46 GLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 G AA Q+G+ R++++ D P + +NP SD EGCLS+P Sbjct: 48 GFAAPQVGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGK 107 Query: 101 RADVKRSAFITVR----YMDCNAQHQII--YADGLLATCLQHELDHLNGILFID 148 V+R + + + D A +I Y + QHE+DHL G +++D Sbjct: 108 VGVVERYVHVELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVD 161 >gi|289676938|ref|ZP_06497828.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 100 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII--YADGLLA 131 + INP I EGCLS+P R V R + ++RY + Q Q I A G A Sbjct: 2 ILINPLITPLGSTLEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPQGQPIERVAHGFHA 59 Query: 132 TCLQHELDHLNGILFIDHLSRLKR 155 +QHE DHL G L+ ++ + Sbjct: 60 RVVQHECDHLIGRLYPSRITDFSK 83 >gi|253751244|ref|YP_003024385.1| peptide deformylase [Streptococcus suis SC84] gi|253753145|ref|YP_003026285.1| peptide deformylase [Streptococcus suis P1/7] gi|253754968|ref|YP_003028108.1| peptide deformylase [Streptococcus suis BM407] gi|251815533|emb|CAZ51115.1| peptide deformylase [Streptococcus suis SC84] gi|251817432|emb|CAZ55172.1| peptide deformylase [Streptococcus suis BM407] gi|251819390|emb|CAR44821.1| peptide deformylase [Streptococcus suis P1/7] gi|319757521|gb|ADV69463.1| peptide deformylase [Streptococcus suis JS14] Length = 136 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++++++ +V NP +I+ + + +EGCLS+ R Sbjct: 42 VGMAANMIGVKKRIIIVNM-----GFTNLVMYNPVLISKAKPYQT-EEGCLSLEGTRP-T 94 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V + D + + + A +QHELDHL GI+ Sbjct: 95 TRYQEIEVEFFDASWKKISLKLTDFQAQIVQHELDHLEGII 135 >gi|227891784|ref|ZP_04009589.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] gi|227866443|gb|EEJ73864.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] Length = 136 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 18/138 (13%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 IL + S P K +DI + D + + Y D +G+AA IG ++ Sbjct: 11 ILSKKSTPTSK--NDIAIVQDLVDTLTYHRDHCVGMAANMIGKNKCIIACQF-------G 61 Query: 72 PMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--D 127 P++ INP I S +S EGCLS+ R + R I V Y+ N Q ++A + Sbjct: 62 PLIVAMINPVITKKSQKYST-SEGCLSLTGER-ETTRFNKIEVSYL--NQSFQKVHATFE 117 Query: 128 GLLATCLQHELDHLNGIL 145 G A +QHE+DH NGIL Sbjct: 118 GFNAQIIQHEIDHCNGIL 135 >gi|292557811|gb|ADE30812.1| Formylmethionine deformylase [Streptococcus suis GZ1] Length = 163 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++++++ +V NP +I+ + + +EGCLS+ R Sbjct: 69 VGMAANMIGVKKRIIIVNM-----GFTNLVMYNPVLISKAKPYQT-EEGCLSLEGTRPTT 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V + D + + + A +QHELDHL GI+ Sbjct: 123 -RYQEIEVEFFDASWKKISLKLTDFQAQIVQHELDHLEGII 162 >gi|212211904|ref|YP_002302840.1| peptide deformylase [Coxiella burnetii CbuG_Q212] gi|212010314|gb|ACJ17695.1| peptide deformylase [Coxiella burnetii CbuG_Q212] Length = 213 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%) Query: 46 GLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 G AA Q+G+ R++++ D P + +NP SD EGCLS+P Sbjct: 52 GFAAPQVGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGK 111 Query: 101 RADVKRSAFITVR----YMDCNAQHQII--YADGLLATCLQHELDHLNGILFID 148 V+R + + + D A +I Y + QHE+DHL G +++D Sbjct: 112 VGVVERYVHMELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVD 165 >gi|291547509|emb|CBL20617.1| N-formylmethionyl-tRNA deformylase [Ruminococcus sp. SR1/5] Length = 136 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 7/99 (7%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV ++++++ +V NP I++ D + +EGCLS+ R Sbjct: 42 VGMAANMIGVKKNIIIVNMGFIN-----VVMFNPVIVSKRDMYET-EEGCLSLDGVRKTT 95 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 R I V Y D + Q G A QHE+DHL+G Sbjct: 96 -RYQEIEVEYYDFKWKKQRQKLSGWTAQICQHEIDHLSG 133 >gi|315221248|ref|ZP_07863171.1| peptide deformylase [Streptococcus anginosus F0211] gi|315189607|gb|EFU23299.1| peptide deformylase [Streptococcus anginosus F0211] Length = 140 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIPDYRA 102 +G+AA IGV ++++ + P++ NP S Y +E CLS+ R Sbjct: 46 VGMAANMIGVQKQVIIF-----MYGMVPVIMFNP---ILKRKLSPYRAEESCLSLAGSRL 97 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R ITV Y+D + Q Q + A QHELDHL GIL Sbjct: 98 TT-RYKEITVDYLDQHWQKQTLTLKDFPAQICQHELDHLEGIL 139 >gi|259048010|ref|ZP_05738411.1| peptide deformylase [Granulicatella adiacens ATCC 49175] gi|259035349|gb|EEW36604.1| peptide deformylase [Granulicatella adiacens ATCC 49175] Length = 137 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 13/105 (12%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRA 102 +G+AA IGV ++++ + PM V +NP+I + +EGCLS + Sbjct: 43 VGMAANMIGVKKNIIIVAI-------GPMDLVMLNPRITKKQGPYET-EEGCLSHTGTKK 94 Query: 103 DVKRSAFITVRYMDCNAQ-HQIIYADGLLATCLQHELDHLNGILF 146 R I V Y D + + H + D A +QHE+DHL GIL Sbjct: 95 -TTRYQTIEVAYTDPSGKKHTGTFTD-FTAQVIQHEIDHLEGILI 137 >gi|260584847|ref|ZP_05852592.1| peptide deformylase [Granulicatella elegans ATCC 700633] gi|260157504|gb|EEW92575.1| peptide deformylase [Granulicatella elegans ATCC 700633] Length = 137 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 7/101 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +GLAA IG ++++ A +V +NP I S + +EGCLS ++ Sbjct: 43 VGLAANMIGSHKAIIIV-----AAGPFDIVMVNPVITKKSQPYQT-EEGCLSHTGMKS-T 95 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I VRY D + A +QHE+DHL GIL Sbjct: 96 TRYQKIEVRYQDATGKTHTGTFTEFTAQVIQHEIDHLQGIL 136 >gi|301301079|ref|ZP_07207239.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851349|gb|EFK79073.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 136 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 18/138 (13%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 IL + S P K +DI + D + + Y D +G+AA IG ++ Sbjct: 11 ILSKKSTPASK--NDIAIVQDLVDTLNYHRDHCVGMAANMIGKNKCIIACQF-------G 61 Query: 72 PMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--D 127 P++ INP I S +S EGCLS+ R + R I V Y+ N Q ++A + Sbjct: 62 PLIVAMINPVITKKSQKYST-SEGCLSLTGER-ETTRFNKIKVSYL--NQSFQKVHATFE 117 Query: 128 GLLATCLQHELDHLNGIL 145 G A +QHE+DH NGIL Sbjct: 118 GFNAQIIQHEIDHCNGIL 135 >gi|291523053|emb|CBK81346.1| N-formylmethionyl-tRNA deformylase [Coprococcus catus GD/7] Length = 136 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 7/106 (6%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 + + +G+AA IG+ ++++++ +V NP ++ S + +EGCLS+ Sbjct: 37 HRAECVGMAANMIGIKKNVIIVNMG-----IVDLVMFNPVLLKKSGPYET-EEGCLSLTG 90 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R R I V Y D + + G A QHE+DHLNGI+ Sbjct: 91 VR-KTTRYREIEVEYRDMSWTVRRQKLSGWTAQICQHEMDHLNGII 135 >gi|157873892|ref|XP_001685446.1| polypeptide deformylase-like protein [Leishmania major strain Friedlin] gi|68128518|emb|CAJ08650.1| putative polypeptide deformylase-like protein [Leishmania major strain Friedlin] Length = 271 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Query: 74 VFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V++NP + + D +V E C+S A V R IT D + H++ DG Sbjct: 122 VWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRITCSGYDEHGNHKVQVLDG 181 Query: 129 LLATCLQHELDHLNG 143 + A CL HELDHL G Sbjct: 182 MRARCLMHELDHLMG 196 >gi|315931998|gb|EFV10951.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 327] Length = 74 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 46/66 (69%), Gaps = 1/66 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV+K ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R+++ Sbjct: 1 MVRK-IITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLL 59 Query: 61 IDLQDH 66 +++ D Sbjct: 60 VNIFDE 65 >gi|322494221|emb|CBZ29518.1| putative polypeptide deformylase-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 271 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110 + VI ++ + K V++NP + + D +V E C+S A V R I Sbjct: 104 WDAAVILIKGNPDEKEYEVWVNPLVPGYDDRDAVAPMYGMWENCISCGTATAWVVRPQRI 163 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 T D + H++ DG+ A CL HELDHL G Sbjct: 164 TCSGYDEHGNHKVQVLDGMRARCLMHELDHLMG 196 >gi|169838490|ref|ZP_02871678.1| hypothetical protein cdivTM_15541 [candidate division TM7 single-cell isolate TM7a] Length = 118 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 S+F + + + + I A+G LA LQHE+DH NGI+FIDH+ + K+D K Sbjct: 32 SSFYENKIIRTDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 84 >gi|322501785|emb|CBZ36867.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 271 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Query: 74 VFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V++NP + + D +V E C+S A V R +T D + H++ DG Sbjct: 122 VWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRVTCSGYDEHGNHKVQVLDG 181 Query: 129 LLATCLQHELDHLNG 143 + A CL HELDHL G Sbjct: 182 MRARCLMHELDHLMG 196 >gi|146096471|ref|XP_001467816.1| polypeptide deformylase-like protein [Leishmania infantum JPCM5] gi|134072182|emb|CAM70883.1| putative polypeptide deformylase-like protein [Leishmania infantum JPCM5] Length = 271 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Query: 74 VFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V++NP + + D +V E C+S A V R +T D + H++ DG Sbjct: 122 VWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRVTCSGYDEHGNHKVQVLDG 181 Query: 129 LLATCLQHELDHLNG 143 + A CL HELDHL G Sbjct: 182 MRARCLMHELDHLMG 196 >gi|213027380|ref|ZP_03341827.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 44 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/40 (57%), Positives = 31/40 (77%) Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +LA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 1 MLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 40 >gi|29655164|ref|NP_820856.1| peptide deformylase [Coxiella burnetii RSA 493] gi|39931092|sp|Q83AK6|DEF2_COXBU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|29542436|gb|AAO91370.1| peptide deformylase [Coxiella burnetii RSA 493] Length = 209 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 11/114 (9%) Query: 46 GLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 G A Q+G+ R++++ D P + +NP SD EGCLS+P Sbjct: 48 GFAVPQVGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGK 107 Query: 101 RADVKRSAFITVR----YMDCNAQHQII--YADGLLATCLQHELDHLNGILFID 148 V+R + + + D A +I Y + QHE+DHL G +++D Sbjct: 108 VGVVERYVHVELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVD 161 >gi|152990073|ref|YP_001355795.1| hypothetical protein NIS_0324 [Nitratiruptor sp. SB155-2] gi|151421934|dbj|BAF69438.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 266 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ +PD L ++S I +N +++ + + + + LAA+QIG R++V+ + Sbjct: 4 ILTYPDHTLLQISGLIRDFKDPKINEIVEEIKKTIEENNLQALAAIQIGEPLRIIVLKKK 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D + V INP I + E S+P+ V+R I V Y D + Sbjct: 64 DGTYE----VMINPTIYGKEGQYFASTESDESLPNIEVTVQRYPVIKVMYEDLQGNQKFY 119 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 A A LQ ++D + G D LS Sbjct: 120 TAKDDEAVLLQRKIDMVFGGYLFDKLS 146 >gi|291519179|emb|CBK74400.1| N-formylmethionyl-tRNA deformylase [Butyrivibrio fibrisolvens 16/4] Length = 136 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 14/135 (10%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 L++ S P + ++ + ++D M + + D +G+AA IGV +++V+ P Sbjct: 12 LQQKSEPATEADAQV--IVDLMDTLKANIDRCVGMAANMIGVKKQIIVV-------AAGP 62 Query: 73 MVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 +F +NP I S + +E CLS+ R V R I V Y+D N Q + G Sbjct: 63 FIFPMVNPVITKKSGKYET-EESCLSLDGVRPCV-RYDEIEVDYLDQNFQPKHGKYSGFT 120 Query: 131 ATCLQHELDHLNGIL 145 A +QHE+ H +G L Sbjct: 121 AQIIQHEIQHFSGEL 135 >gi|157825208|ref|YP_001492928.1| polypeptide deformylase [Rickettsia akari str. Hartford] gi|157799166|gb|ABV74420.1| Polypeptide deformylase [Rickettsia akari str. Hartford] Length = 100 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 38/81 (46%) Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 ++INP D EG S+ + V R I D N +G LA Sbjct: 5 IWINPSYKQVDIDKHEDYEGFFSVENATGPVARFKKIHCHAYDINGHQIQGITEGFLARV 64 Query: 134 LQHELDHLNGILFIDHLSRLK 154 +QHE+DHLNG +F+D+++ K Sbjct: 65 IQHEIDHLNGKVFLDYVAPEK 85 >gi|160895157|ref|ZP_02075930.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50] gi|156863191|gb|EDO56622.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50] Length = 144 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 29 MNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNP--MVFINPKIITFS 84 MN+++++ + + + +G+ A IG ++++ P M+ INP I + Sbjct: 32 MNVVNDLRDTLAANRERCVGMEANMIGYKKNMIIVSA-------GPVDMIMINPVICSKI 84 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + +EGCLS+ R R I V + D + + +G +A +QHE+DH NGI Sbjct: 85 GRYET-EEGCLSLEGKRKTT-RYKKIEVEFQDAGFVKRKMAFEGFVAQIIQHEVDHCNGI 142 Query: 145 L 145 + Sbjct: 143 V 143 >gi|154343115|ref|XP_001567503.1| polypeptide deformylase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064835|emb|CAM42941.1| putative polypeptide deformylase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 271 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Query: 74 VFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V++NP + + D +V E C+S A V R IT R + + + ++ DG Sbjct: 122 VWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRITCRGYNEHGREKVQVLDG 181 Query: 129 LLATCLQHELDHLNG 143 + A CL HELDHL G Sbjct: 182 MRARCLMHELDHLMG 196 >gi|145531163|ref|XP_001451350.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124419001|emb|CAK83953.1| unnamed protein product [Paramecium tetraurelia] Length = 219 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--------DLQDHAHR 69 ++PI+ ++ + +I + + + L+ QIG Y++ V+ ++ Sbjct: 35 TQPIQMMSQRMKQIIQCLKMTAAQENAVSLSCPQIGYNYQIFVVLKHMKKNQWCYNNLSS 94 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--D 127 + M INP+ + S V E C S P V+R I +++ N + ++I Sbjct: 95 SDYMTLINPQKLKQSRFTQVEWEECPSFPFLMGKVERPYKIEYQFI--NEKFKLIKQTLS 152 Query: 128 GLLATCLQHELDHLNGI 144 G A +QHE+DHL GI Sbjct: 153 GFEARVVQHEMDHLEGI 169 >gi|209732808|gb|ACI67273.1| Peptide deformylase, mitochondrial precursor [Salmo salar] Length = 112 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 37/77 (48%) Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 +FIN ++ +QE C SI + A V + V ++ A+ G Sbjct: 22 IFINHQLRVLDGRTVKFQEACESISGFSATVPHYLSVEVSGLNEKAEPVTWQVSGWPVRN 81 Query: 134 LQHELDHLNGILFIDHL 150 LQHE+DHL+G+ +ID + Sbjct: 82 LQHEMDHLDGVWYIDRM 98 >gi|295094704|emb|CBK83795.1| N-formylmethionyl-tRNA deformylase [Coprococcus sp. ART55/1] Length = 136 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 12/132 (9%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P+ +++ I I +M + + + +G+A IG R++++ + A+ Sbjct: 12 LSQKSSPMTTMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRIIIVSM-GFAN--- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V +NP +++ S + +EGCLS+ R V R I V + D + + + +G +A Sbjct: 65 -VVMLNPVLLSKSGAYET-EEGCLSLDGTR-KVTRYRDIEVEFQDASFAKKRMKFNGYIA 121 Query: 132 TCLQHELDHLNG 143 + HE+DHL G Sbjct: 122 QIVLHEMDHLEG 133 >gi|163816477|ref|ZP_02207841.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759] gi|158448177|gb|EDP25172.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759] Length = 136 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 12/132 (9%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P+ +++ I I +M + + + +G+A IG R++++ + A+ Sbjct: 12 LSQKSSPMTPMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRIIIVSM-GFAN--- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V +NP +++ S + +EGCLS+ R V R I V + D + + + +G +A Sbjct: 65 -VVMLNPVLLSKSGAYET-EEGCLSLDGTR-KVTRYRDIEVEFQDASFAKKRMKFNGYIA 121 Query: 132 TCLQHELDHLNG 143 + HE+DHL G Sbjct: 122 QIVLHEMDHLEG 133 >gi|295108734|emb|CBL22687.1| N-formylmethionyl-tRNA deformylase [Ruminococcus obeum A2-162] Length = 77 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 +V NP I++ D + +EGCLS+ R R I V Y D N + + G A Sbjct: 6 VVMFNPVIVSKRDMYET-EEGCLSLDGVRK-TTRYQEIEVEYYDFNWKKKRQRLSGWTAQ 63 Query: 133 CLQHELDHLNG 143 QHE+DHL+G Sbjct: 64 ICQHEIDHLSG 74 >gi|309805350|ref|ZP_07699400.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c] gi|308165350|gb|EFO67583.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c] Length = 95 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 92 EGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 EGCLS+ D + V R+ + ++Y + + + I G A HE+DHLNG LF D + Sbjct: 20 EGCLSVDKDIQGYVPRAYKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRI 79 Query: 151 SR 152 + Sbjct: 80 DK 81 >gi|239621599|ref|ZP_04664630.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515474|gb|EEQ55341.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 141 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IGV R++ +D R V NP I T D EGCLS+ R + Sbjct: 44 VGMAANMIGVPKRIIAFVDEDLGGRIT--VMFNPHI-TAQDGAYDASEGCLSLNGERHTL 100 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V Y D + + G A +QHE+DH +G++ Sbjct: 101 -RYQRIEVTYEDRRFRERHATFTGFTAQIIQHEIDHCDGVI 140 >gi|118096630|ref|XP_001232975.1| PREDICTED: similar to Component of oligomeric golgi complex 8 [Gallus gallus] Length = 677 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Query: 67 AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 AHR P + ++P + EG SI + A V R V +D N Sbjct: 576 AHRIEPFPLRLLVSPALRVRDGRRGTAPEGGASIRGFAAGVPRRGAGHVSGVDENGDPVS 635 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150 A G A +QHE+DHL+G+LFID + Sbjct: 636 WEATGWAARIVQHEMDHLDGVLFIDRM 662 >gi|118386952|ref|XP_001026593.1| polypeptide deformylase family protein [Tetrahymena thermophila] gi|89308360|gb|EAS06348.1| polypeptide deformylase family protein [Tetrahymena thermophila SB210] Length = 318 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 12/145 (8%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK--------- 70 P++ + + I N+ + + LAA QIG+ R +V+ D+ +++ Sbjct: 98 PVQGFTQTLKSEILNLKYHAEVSGRVNLAANQIGIPKRFIVLAKPDYLYKRVWVNDNLDI 157 Query: 71 -NPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + +NP+I+ D F Y E P R R I V+Y++ + + +G Sbjct: 158 QHLHALVNPRILD-KDKFMEYDWEQTACFPTVRFRRLRYHHILVQYLNEQMEQVEVEMNG 216 Query: 129 LLATCLQHELDHLNGILFIDHLSRL 153 + Q LDHLNGI+ D + + Sbjct: 217 WESRLFQQSLDHLNGIIPFDEVKNM 241 >gi|302765893|ref|XP_002966367.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii] gi|300165787|gb|EFJ32394.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii] Length = 340 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 37/129 (28%) Query: 23 KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT 82 +INS N+ ML+V Y DGIGL Q+GV RL MVF NP+ Sbjct: 61 RINSFDDNVKKLMLDVTYRRDGIGLLTPQLGVNARL--------------MVF-NPE--- 102 Query: 83 FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 + G YR+++K D N + + A +HE DHL Sbjct: 103 -------GERGKGKRDRYRSELK--------SQDINGKKYGSWT----ARIFRHEYDHLE 143 Query: 143 GILFIDHLS 151 G+L+ID ++ Sbjct: 144 GVLYIDQMT 152 >gi|229818453|ref|ZP_04448734.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM 20098] gi|229784323|gb|EEP20437.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM 20098] Length = 141 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 4/101 (3%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +G+AA IG R++ ++ R M NP+I T D EGCLS+ R + Sbjct: 44 VGMAANMIGEHKRIIAFVDEELGGRITLM--FNPRI-TAQDGAYDTAEGCLSLNGERRTL 100 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 R I V YMD + + G A +QHE+DH +G++ Sbjct: 101 -RYQRIEVDYMDRRWRERHATFTGFTAQIIQHEIDHCDGVI 140 >gi|50365386|ref|YP_053811.1| polypeptide deformylase [Mesoplasma florum L1] gi|50363942|gb|AAT75927.1| polypeptide deformylase [Mesoplasma florum L1] Length = 200 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 4/112 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDY 100 +GLAA QIGV + I ++ IN + + S + +EG CLS+ D Sbjct: 75 AVGLAAPQIGVNKDMFYIRFNLPNNQIEEYAMINTEYLAKSSRMAALEEGEGCLSVDEDK 134 Query: 101 RADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 V RS I+V+ D + + + + QHE+DH G L+ DH++ Sbjct: 135 HGIVPRSWIISVKGFDWLKKEWVELKLKDYRSIVFQHEMDHNIGNLYYDHIN 186 >gi|317488618|ref|ZP_07947161.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325831659|ref|ZP_08164876.1| peptide deformylase [Eggerthella sp. HGA1] gi|316912270|gb|EFV33836.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325486530|gb|EGC88979.1| peptide deformylase [Eggerthella sp. HGA1] Length = 139 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 19/142 (13%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVV-IDLQDHAH 68 + IL +V P +D + D+++E + S DG LAA QIG ++ +D D H Sbjct: 9 EAILSQVCTPA---TTDDAQVADDLVETLTSMDGAACLAANQIGATTCIIAYLDDDDQPH 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF--ITVRY---MDCNAQHQI 123 V NP+++ F EGCLS+ AD K + F I V Y +D + + Sbjct: 66 -----VMYNPRLLQALGAFKAV-EGCLSL---EADSKVTRFDRIKVGYSELVDGELKPRK 116 Query: 124 IYADGLLATCLQHELDHLNGIL 145 +G A +QH +DH G L Sbjct: 117 KDFNGWTAQIIQHGIDHCKGKL 138 >gi|255018922|ref|ZP_05291048.1| peptide deformylase [Listeria monocytogenes FSL F2-515] Length = 65 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V RS +T+ D N + G A +QHE+DHLNGI+F DH+++ Sbjct: 3 VVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINK 51 >gi|302803460|ref|XP_002983483.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii] gi|300148726|gb|EFJ15384.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii] Length = 157 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 17/102 (16%) Query: 11 DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62 DP+L +R + +++SD + N I +++ M +GLAA QIGV +++V++ Sbjct: 55 DPVLHEAAREVLHSEVSSDTVQNTIQGLIDAMREAPAVGLAAPQIGVPLQIIVLEDTAEY 114 Query: 63 ----LQDHA--HRKNP---MVFINPKIITFSDDFSVYQEGCL 95 +D A ++ P +V INP + + + + EGCL Sbjct: 115 ISYVSRDEALSQQRKPFELLVIINPILRPTTSATARFFEGCL 156 >gi|289677569|ref|ZP_06498459.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 47 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 25/39 (64%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL 47 FPD LR +++P+ ++ I L+D+M E MY GIGL Sbjct: 9 FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGL 47 >gi|302766599|ref|XP_002966720.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii] gi|300166140|gb|EFJ32747.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii] Length = 277 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 37/143 (25%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ DP LR + I + + L ML+V Y DG+GL+A Q+GV RL Sbjct: 144 IVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARL------- 193 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 MVF NP+ + G YR+++K D N + Sbjct: 194 -------MVF-NPE----------GERGKGKEDRYRSELK--------AQDINGKKFGTA 227 Query: 126 ADGLLATCLQHELDHLN-GILFI 147 G A +HE DHL ++F+ Sbjct: 228 FRGWTAGIFRHEYDHLEVAVVFV 250 >gi|257068452|ref|YP_003154707.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] gi|256559270|gb|ACU85117.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] Length = 240 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 17/131 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI-----------DLQDHAHRKN-PM-VFINPKII 81 M M + G+GLAA Q+G+ VI ++ D R+ P+ ++P + Sbjct: 67 MTVTMRAAPGVGLAAPQVGLPLSFYVIEDRYADEPGEDEVGDLLERRPLPLRALLDPVLE 126 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD----GLLATCLQHE 137 EGCLS+ +++ V RS + +R + + + G A LQHE Sbjct: 127 PLGTQRVYAFEGCLSVDGWQSIVPRSRRVLLRATELLGDGSLREVEEEHVGWTARILQHE 186 Query: 138 LDHLNGILFID 148 DHL G L D Sbjct: 187 TDHLAGTLCHD 197 >gi|239792061|dbj|BAH72415.1| ACYPI003516 [Acyrthosiphon pisum] Length = 119 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 3/61 (4%) Query: 11 DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+LR + P+ EKI + ++ NLI M +M ++ IGLAA Q+G+ +++ VI + Sbjct: 32 DPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIHFPRPS 91 Query: 68 H 68 H Sbjct: 92 H 92 >gi|313239302|emb|CBY14250.1| unnamed protein product [Oikopleura dioica] Length = 1132 Score = 42.0 bits (97), Expect = 0.032, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 32/173 (18%) Query: 6 LVIFPDPILRRVS-------------RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQI 52 L + DP+LR+ + + E N IM + M M++ G + A Q+ Sbjct: 11 LALIGDPVLRQPAADFDVNVYNSVDMKTFENHNPAIMKSLAKM--EMFAQYGWVITAPQV 68 Query: 53 GVLYRLVVIDLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 G+ +++++ L + VF NP+I +++ + E LSIP Sbjct: 69 GLPIKIMLVQLHLGLDDDGFTIKGTDKTKNYVFANPEIRPLTNEKAFSIESSLSIPALSG 128 Query: 103 DVKRSAFITVRYMDCNAQHQIIYA----DGLLATCLQHELDHLNGILFIDHLS 151 ++R I + D A+ + D + +Q+ +D LNG++FID ++ Sbjct: 129 VLERHQLIELTAYDLAARRVVKMTLSPPDSFM---VQNAVDQLNGVMFIDKVT 178 >gi|299116828|emb|CBN74940.1| dubious peptide deformylase [Ectocarpus siliculosus] Length = 97 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%) Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 +FS DF+ EG +S V+R ++ V ++ + A QHE DHL Sbjct: 8 SFSIDFT---EG-VSFWSPLLQVERRNWVKVEAVNAKGKKVKKKYTDWTARIFQHEYDHL 63 Query: 142 NGILFIDHLSRLKRDMITKKMSKLVQ 167 +G ++IDHLS +R+ + + KLV Sbjct: 64 DGTVYIDHLSPPEREKVQPVLDKLVS 89 >gi|254456880|ref|ZP_05070308.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] gi|207085672|gb|EDZ62956.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] Length = 267 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 8/161 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K + +P + N ++ LI ++ + + LAA QIG ++V+ Sbjct: 3 KEITKYPTKPSLEFGANVRFFNDELFALIQDLKDTIEVNSLDALAAFQIGSPLSVIVVK- 61 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + INP+++ + SV E P A KR IT+ Y D +A + Sbjct: 62 ----KGGEFLELINPRVL--KREGSVEPVETTAYFPGMSAKTKRYEKITLMYEDRDATQK 115 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + ADG LA LQ ++D+ G F L + ++ + K+ Sbjct: 116 FLEADGELAITLQRKVDYTFGSHFRFRLDKDEQKLFDSKLE 156 >gi|281202742|gb|EFA76944.1| hypothetical protein PPL_09696 [Polysphondylium pallidum PN500] Length = 614 Score = 40.8 bits (94), Expect = 0.063, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 28/43 (65%) Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 D + + + I ADG+++ CLQHE DHL G +FI+ L D++ Sbjct: 57 DISGKDRSIEADGIISACLQHENDHLLGRVFIERLKNGVNDLV 99 >gi|167947582|ref|ZP_02534656.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 58 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +G A LQHE+DHL+GILF+D L + D+ +K+ Sbjct: 12 EGYEARALQHEVDHLDGILFVDRLVSRRTDLFQRKV 47 >gi|257790523|ref|YP_003181129.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] gi|257474420|gb|ACV54740.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] Length = 139 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 19/142 (13%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVV-IDLQDHAH 68 + L +V P ++ + D+++E + S DG LAA QIG ++ +D D H Sbjct: 9 EATLSQVCTPA---TAEDAQVADDLVETLTSMDGAACLAANQIGATTCIIAYLDDDDQPH 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF--ITVRY---MDCNAQHQI 123 V NP+++ F EGCLS+ AD K + F I V Y +D + + Sbjct: 66 -----VMYNPRLLQALGAFKAV-EGCLSL---EADSKVTRFDRIKVGYSELVDGELKPRK 116 Query: 124 IYADGLLATCLQHELDHLNGIL 145 +G A +QH +DH G L Sbjct: 117 KDFNGWTAQIIQHGIDHCKGKL 138 >gi|149411900|ref|XP_001510213.1| PREDICTED: similar to bromodomain adjacent to zinc finger domain, 1A [Ornithorhynchus anatinus] Length = 200 Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 A R + ++D N + + A G A +QHE+DHL G L+ID + Sbjct: 137 AGRARRTDVPGHWLDENGEPVVWQASGWPARIIQHEMDHLQGSLYIDKM 185 >gi|183602062|ref|ZP_02963431.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219682971|ref|YP_002469354.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|241190548|ref|YP_002967942.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195954|ref|YP_002969509.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218947|gb|EDT89589.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219620621|gb|ACL28778.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|240248940|gb|ACS45880.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250508|gb|ACS47447.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793535|gb|ADG33070.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9] Length = 142 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79 P + +++ I + L + + +G+AA IG R VI D V NP+ Sbjct: 21 PADPLDAAIAQDLKETL-AAHREECVGMAANMIGEPKR--VIAFVDEGLGSAITVMFNPQ 77 Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 I ++ EGCLS+ R R I V Y + + A +QHE+D Sbjct: 78 ITAADGEYDAC-EGCLSLHGER-HTPRFRRIEVDYTTRKGRARHATFTDWTAQIIQHEID 135 Query: 140 HLNGIL 145 H NG+L Sbjct: 136 HCNGVL 141 >gi|289178283|gb|ADC85529.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12] Length = 188 Score = 40.4 bits (93), Expect = 0.095, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79 P + +++ I + L + + +G+AA IG R VI D V NP+ Sbjct: 67 PADPLDAAIAQDLKETL-AAHREECVGMAANMIGEPKR--VIAFVDEGLGSAITVMFNPQ 123 Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 I ++ EGCLS+ R R I V Y + + A +QHE+D Sbjct: 124 ITAADGEYDAC-EGCLSLHGER-HTPRFRRIEVDYTTRKGRARHATFTDWTAQIIQHEID 181 Query: 140 HLNGIL 145 H NG+L Sbjct: 182 HCNGVL 187 >gi|145509567|ref|XP_001440722.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124407950|emb|CAK73325.1| unnamed protein product [Paramecium tetraurelia] Length = 237 Score = 40.4 bits (93), Expect = 0.095, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 1/123 (0%) Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 LAA Q+G+ L ++ Q + V INPKI+ S++ E +S P ++A V Sbjct: 48 LAANQVGLEQNLFIMLPQSSKMIPSEYKVIINPKILKISNEVIENTEESISFPQFKAKVN 107 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 R I V Y D + GL + Q +D + GI I ++ + + + K Sbjct: 108 RYKTIFVSYDDKKGKTVEEELKGLESIWYQQAIDQVMGIPCISWIASQGKVELKPEYQKQ 167 Query: 166 VQL 168 +L Sbjct: 168 AEL 170 >gi|302776574|ref|XP_002971443.1| hypothetical protein SELMODRAFT_412157 [Selaginella moellendorffii] gi|300160575|gb|EFJ27192.1| hypothetical protein SELMODRAFT_412157 [Selaginella moellendorffii] Length = 239 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 26/124 (20%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EG 93 ML+V Y DG+GL+ Q+G + VF+NP I+ F + EG Sbjct: 1 MLDVTYRRDGVGLSTPQLG---------------KGKGYVFVNPMIVKFGKEREADTLEG 45 Query: 94 CLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--DGL----LATCLQHELDHLNGILFI 147 CL P Y A R I++R Q + I+ GL T G+L+I Sbjct: 46 CL--PFYGAQADR--LISIRVESSRHQREEIWYRLQGLDCSNFPTWRWPWYLFAQGVLYI 101 Query: 148 DHLS 151 D ++ Sbjct: 102 DQMT 105 >gi|146318043|ref|YP_001197755.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33] gi|145688849|gb|ABP89355.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33] Length = 70 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP II+ + + +EGCLS+ R R I V + D + + + A +QH Sbjct: 3 NPVIISKAKPYQT-EEGCLSLEGTRPTT-RYQEIEVEFFDASWKKISLKLTDFQAQIVQH 60 Query: 137 ELDHLNGIL 145 ELDHL GI+ Sbjct: 61 ELDHLEGII 69 >gi|71413918|ref|XP_809080.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL Brener] gi|70873406|gb|EAN87229.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi] Length = 260 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%) Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110 + V+ ++ H + V+++P + + S+ E C+S A V R + Sbjct: 93 WDATVVLIKSHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQSV 152 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 T D + DG+ A CL HELDHL+G Sbjct: 153 TCSGWDEYGNEKTELLDGMRARCLMHELDHLHG 185 >gi|71654685|ref|XP_815957.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL Brener] gi|70881052|gb|EAN94106.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi] Length = 260 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%) Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110 + V+ ++ H + V+++P + + S+ E C+S A V R + Sbjct: 93 WDATVVLIKGHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQCV 152 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 T D + DG+ A CL HELDHL+G Sbjct: 153 TCSGWDEYGNEKTELLDGMRARCLMHELDHLHG 185 >gi|149378482|ref|ZP_01896166.1| peptide deformylase [Marinobacter algicola DG893] gi|149357233|gb|EDM45771.1| peptide deformylase [Marinobacter algicola DG893] Length = 43 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 24/36 (66%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG 44 +PDP LR +++P++++ + LID+M E MY G Sbjct: 8 YPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPG 43 >gi|169837912|ref|ZP_02871100.1| hypothetical protein cdivTM_12604 [candidate division TM7 single-cell isolate TM7a] Length = 68 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + A QHE DH+ GILF D LS L + ++ KK+ Sbjct: 18 MWARAFQHEFDHIEGILFTDRLSILNKRLVAKKL 51 >gi|328955181|ref|YP_004372514.1| formylmethionine deformylase [Coriobacterium glomerans PW2] gi|328455505|gb|AEB06699.1| formylmethionine deformylase [Coriobacterium glomerans PW2] Length = 139 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 26/141 (18%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVVIDLQDHAHRKNPMVF 75 +S+P + ++ L ++L+ + S + G LAA QIG L + V + R P V Sbjct: 12 LSQPAKPATAEDAALAKDLLDTLASLEHAGCLAANQIGALKAICVYSDE----RNEPHVM 67 Query: 76 INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT--- 132 NP+++ F S +E CL+ K RY Q + ADG L T Sbjct: 68 FNPRLL-FGLGASKMREECLT--------KSEPVTVTRYAKVKIQFDEL-ADGALKTRKR 117 Query: 133 --------CLQHELDHLNGIL 145 +QH +DH G L Sbjct: 118 DFTGYTAQMIQHMIDHCRGRL 138 >gi|289676937|ref|ZP_06497827.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 79 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +LV+ + Sbjct: 13 LLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFE 66 >gi|330952314|gb|EGH52574.1| peptide deformylase [Pseudomonas syringae Cit 7] Length = 45 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 23/37 (62%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI 45 FPD LR +++P+ ++ I L+D+M E MY GI Sbjct: 9 FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGI 45 >gi|169837919|ref|ZP_02871107.1| Peptide deformylase [candidate division TM7 single-cell isolate TM7a] Length = 85 Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 46 GLAAVQIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 LAAVQ+ L R+V++ + D+ + INP+II + + + EGCLS+ V Sbjct: 17 ALAAVQVDKLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKV 76 Query: 105 KR 106 R Sbjct: 77 PR 78 >gi|302779762|ref|XP_002971656.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii] gi|300160788|gb|EFJ27405.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii] Length = 556 Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG 53 V++PDP LR +R I +INS N+ ML+V Y DG+GL+ Q+G Sbjct: 72 FVLYPDPKLR--ARNI-RINSFDDNVKKLMLDVTYRRDGVGLSTPQLG 116 >gi|169838808|ref|ZP_02871996.1| hypothetical protein cdivTM_17171 [candidate division TM7 single-cell isolate TM7a] Length = 143 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%) Query: 110 ITVRYMDCNAQHQ--------IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + V M CN HQ ++ +L LQHE+DH NGI+FIDH+ K+D K Sbjct: 8 LRVATMLCNYHHQNGRLSHLDKVFLIRILVRVLQHEIDHTNGIVFIDHIKN-KKDAFYK 65 >gi|322821869|gb|EFZ28075.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi] Length = 260 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%) Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110 + V+ ++ H + V+++P + + S+ E C+S A V R + Sbjct: 93 WDATVVLIKSHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQSV 152 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 T D + G+ A CL HELDHL+G Sbjct: 153 TCSGWDEYGNEKTELLGGMRARCLMHELDHLHG 185 >gi|295106023|emb|CBL03566.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae 7-10-1-b] Length = 139 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 14/135 (10%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVVIDLQDHAHRKNPMVF 75 +S+P E ++ + ++L+ + S D LAA QIGV ++V H + P V Sbjct: 12 LSQPCETATAEDAVVAQDLLDTLASLDEAACLAANQIGVAKAVIVY----HDENEQPHVM 67 Query: 76 INPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRY---MDCNAQHQIIYADGLL 130 NP Y+ EGCL++ + + V R + V Y +D + G Sbjct: 68 YNP---VLKQALGAYKTVEGCLTL-ESESKVTRYERVKVVYDELVDGALVSRKRDFTGWT 123 Query: 131 ATCLQHELDHLNGIL 145 A +QH +DH G L Sbjct: 124 AELIQHMIDHCKGKL 138 >gi|38141771|dbj|BAD00707.1| putative polypeptide deformylase [Streptococcus equi subsp. zooepidemicus] Length = 152 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 25/129 (19%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVM-YSTD-----------GIGLAAVQIGVLYR 57 +P LR V++ +E ++ D + L + M++ + +S D G+GLAA QI V R Sbjct: 24 NPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQIDVSKR 83 Query: 58 LVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPD-YRADVK 105 ++ + + + NP V NPKI++ S D EGCLS+ V Sbjct: 84 IIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRVVEGYVV 143 Query: 106 RSAFITVRY 114 R A +TV Y Sbjct: 144 RHARVTVEY 152 >gi|169840242|ref|ZP_02873430.1| Peptide deformylase [candidate division TM7 single-cell isolate TM7a] Length = 71 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V++ P LR R ++++ ++ +D M+ +M +G+GLAA Q+ + R V++ Sbjct: 4 IVLYGHPTLRE-KRKSDEVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLE 59 >gi|326927579|ref|XP_003209969.1| PREDICTED: conserved oligomeric Golgi complex subunit 8-like, partial [Meleagris gallopavo] Length = 600 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 19/25 (76%) Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150 A G A +QHE+DHL+G+LFID + Sbjct: 561 ATGWAARIVQHEMDHLDGVLFIDRM 585 >gi|167950136|ref|ZP_02537210.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 40 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Query: 76 INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +NP+I + D F + +EGCLS+PDY +V R+ I + D Sbjct: 1 MNPEISKW-DGFELGREGCLSVPDYTGNVIRAERIKLTAQD 40 >gi|302765901|ref|XP_002966371.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii] gi|300165791|gb|EFJ32398.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii] Length = 374 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG 53 V++PDP LR +R I +INS N+ ML+V Y DG+GL+ ++G Sbjct: 72 FVLYPDPKLR--ARNI-RINSFDDNVKKLMLDVTYRRDGVGLSTPRLG 116 >gi|302866922|ref|YP_003835559.1| family 2 glycosyl transferase8 protein [Micromonospora aurantiaca ATCC 27029] gi|315506640|ref|YP_004085527.1| glycosyl transferase family 28 [Micromonospora sp. L5] gi|302569781|gb|ADL45983.1| glycosyl transferase family 28 [Micromonospora aurantiaca ATCC 27029] gi|315413259|gb|ADU11376.1| glycosyl transferase family 28 [Micromonospora sp. L5] Length = 407 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 22/100 (22%) Query: 13 ILRRVSRPIEKINSDIM--------NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + V P NSD+ + L + S G+G V D+ Sbjct: 145 VFGEVPAPASADNSDLWAANLRHVNDTFAAPLNALRSAVGLG------------TVDDVS 192 Query: 65 DHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRA 102 DH H P + +P + + D D +VYQ G +PD RA Sbjct: 193 DHIHTDRPWLATDPTLAPWPDVADPAVYQPGAWLLPDKRA 232 >gi|298294195|ref|YP_003696134.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein [Starkeya novella DSM 506] gi|296930706|gb|ADH91515.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein [Starkeya novella DSM 506] Length = 223 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 V + L D+AHR+ +F + +II +DD ++ + L++P Y V+R I V+ D N Sbjct: 112 VSLFLMDYAHRRRLKIFGHMRIIDAADDPALAER--LAVPGYPGRVERLVLIAVQAFDWN 169 Query: 119 AQHQII 124 I Sbjct: 170 CPQHIT 175 >gi|123454549|ref|XP_001315027.1| hypothetical protein [Trichomonas vaginalis G3] gi|121897691|gb|EAY02804.1| hypothetical protein TVAG_008120 [Trichomonas vaginalis G3] Length = 952 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 5 PLVIFPDPILRRVSRPIEK-INSDIMNL--IDNMLEVMYSTDGIGLAAVQIGVLYRL 58 P + FPD +L+ +S+ I+ + + I L IDN+L +MYST + L A++ +Y+L Sbjct: 184 PNLSFPDILLKYISKLIQYYLETPISALTNIDNVLHLMYSTASLPLLAIEFEKVYKL 240 >gi|158422958|ref|YP_001524250.1| putative pyridoxine 5`-phosphate oxidase protein [Azorhizobium caulinodans ORS 571] gi|158329847|dbj|BAF87332.1| putative pyridoxine 5`-phosphate oxidase protein [Azorhizobium caulinodans ORS 571] Length = 231 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 V + L D+AHR+ +F + +II +DD ++ Q L++ Y ++RS I V D N Sbjct: 123 VSLFLMDYAHRQRLKIFGHARIIDAADDPALTQR--LAVQGYAGRIERSVLIAVEAFDWN 180 Query: 119 AQHQII 124 I Sbjct: 181 CPQHIT 186 >gi|167566564|ref|ZP_02359480.1| BarD [Burkholderia oklahomensis EO147] Length = 529 Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%) Query: 89 VYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 V++ GC+ +P D R R +RY+ + ++ AD L L+H L + I+ + Sbjct: 73 VFRAGCVHVPLDPRMPADR-----LRYILHDVAPTLVIADEDLTDALEHALPSVAPIMLV 127 Query: 148 DHLSRLKRDMITKKMSKLVQ 167 L RL D + ++ LVQ Sbjct: 128 SELERLLADDDSARLDALVQ 147 >gi|90422943|ref|YP_531313.1| bifunctional ADP-heptose synthase [Rhodopseudomonas palustris BisB18] gi|119365076|sp|Q219E2|HLDE_RHOPB RecName: Full=Bifunctional protein hldE; Includes: RecName: Full=D-beta-D-heptose 7-phosphate kinase; AltName: Full=D-beta-D-heptose 7-phosphotransferase; Includes: RecName: Full=D-beta-D-heptose 1-phosphate adenosyltransferase gi|90104957|gb|ABD86994.1| D-alpha,beta-D-heptose 7-phosphate 1-kinase / D-beta-D-heptose 1-phosphate adenylyltransferase [Rhodopseudomonas palustris BisB18] Length = 490 Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Query: 30 NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV 89 LID +L+ + + D + L+ GVL ++ ++ D A + N V ++PK S +F++ Sbjct: 140 QLIDAILQQLPAADIVLLSDYAKGVLTARLIREVIDAARKLNKRVIVDPK----SPNFAL 195 Query: 90 YQEGCLSIPDYR--ADVKRSAFITVRYMDCNAQHQIIYAD 127 Y+ L P+ + A+ RS + + +A+ I AD Sbjct: 196 YRGATLLTPNRKEFAEATRSRADSQAEIAASAREAIAVAD 235 >gi|253795648|ref|YP_003038744.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem] gi|253739956|gb|ACT34291.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem] Length = 166 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V + + + +E CLS+ + V RS + + A+ + G+ A C Sbjct: 71 VIVGSARVRLAGCARESREACLSLTSAVSVVARSWRVCAVAL--AARAGALSVRGVAACC 128 Query: 134 LQHELDHLNGILFID 148 QHELDH+ G+L D Sbjct: 129 CQHELDHVVGVLIAD 143 >gi|159186670|ref|NP_396485.2| hypothetical protein Atu5548 [Agrobacterium tumefaciens str. C58] gi|159141730|gb|AAK90926.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 189 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 V + L D+AHR+ +F + ++I +DD + L++PDY A V+R I V D N Sbjct: 112 VSLFLMDYAHRRRLKIFGHVRVIDANDDQEL--AARLTMPDYPARVERLILIAVEAYDWN 169 Query: 119 AQHQII 124 I Sbjct: 170 CPQHIT 175 Searching..................................................done Results from round 2 >gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62] gi|254039974|gb|ACT56770.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62] Length = 170 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 170/170 (100%), Positives = 170/170 (100%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV Sbjct: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ Sbjct: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD Sbjct: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 >gi|227820644|ref|YP_002824614.1| peptide deformylase [Sinorhizobium fredii NGR234] gi|227339643|gb|ACP23861.1| peptide deformylase [Sinorhizobium fredii NGR234] Length = 174 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 100/169 (59%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+VS P+E I++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 1 MTIKPLIILPDPILRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPKI+ S++ SVY+EGCLSIPDY A+V+R A I V Y+D + + Sbjct: 61 LDVSKEGEEKTPLVFINPKIVKSSEERSVYEEGCLSIPDYYAEVERPAAIAVEYLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K + R Sbjct: 121 QQSVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169 >gi|116250199|ref|YP_766037.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841] gi|115254847|emb|CAK05921.1| putative peptide deformylase (polypeptide deformylase) [Rhizobium leguminosarum bv. viciae 3841] Length = 171 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 133/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE+++SD+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ S+Y+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDISREGEEKQPQVFINPEIVKSSDERSLYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|254720138|ref|ZP_05181949.1| peptide deformylase [Brucella sp. 83/13] gi|265985144|ref|ZP_06097879.1| peptide deformylase [Brucella sp. 83/13] gi|306838492|ref|ZP_07471332.1| peptide deformylase [Brucella sp. NF 2653] gi|264663736|gb|EEZ33997.1| peptide deformylase [Brucella sp. 83/13] gi|306406424|gb|EFM62663.1| peptide deformylase [Brucella sp. NF 2653] Length = 175 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 90/169 (53%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +FINP I+ SD+ S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFINPTIVQSSDERSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|218460831|ref|ZP_03500922.1| peptide deformylase [Rhizobium etli Kim 5] Length = 171 Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 133/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPILRQLSQPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|218513698|ref|ZP_03510538.1| peptide deformylase [Rhizobium etli 8C-3] Length = 171 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 132/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP LR++S+PIE++++++ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPFLRQLSKPIERVDAELQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169 >gi|190890084|ref|YP_001976626.1| peptide deformylase [Rhizobium etli CIAT 652] gi|190695363|gb|ACE89448.1| peptide deformylase protein [Rhizobium etli CIAT 652] Length = 171 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 133/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169 >gi|209547667|ref|YP_002279584.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533423|gb|ACI53358.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 171 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 132/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+ S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPILRQASKPIERVDADLQGLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+++D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKFLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|241202826|ref|YP_002973922.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856716|gb|ACS54383.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 171 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 133/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE+++SD+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+++ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDIAREGEEKQPQVFINPEVVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|327191106|gb|EGE58154.1| peptide deformylase protein [Rhizobium etli CNPAF512] Length = 171 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 132/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVEYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169 >gi|189023113|ref|YP_001932854.1| peptide deformylase [Brucella abortus S19] gi|254690651|ref|ZP_05153905.1| peptide deformylase [Brucella abortus bv. 6 str. 870] gi|254696044|ref|ZP_05157872.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|254699153|ref|ZP_05160981.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|254700229|ref|ZP_05162057.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|254703350|ref|ZP_05165178.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|254705509|ref|ZP_05167337.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|254710740|ref|ZP_05172551.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|254732597|ref|ZP_05191175.1| peptide deformylase [Brucella abortus bv. 4 str. 292] gi|256029123|ref|ZP_05442737.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|256043903|ref|ZP_05446822.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|256058806|ref|ZP_05449022.1| peptide deformylase [Brucella neotomae 5K33] gi|256111033|ref|ZP_05452095.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|256157315|ref|ZP_05455233.1| peptide deformylase [Brucella ceti M490/95/1] gi|256253707|ref|ZP_05459243.1| peptide deformylase [Brucella ceti B1/94] gi|256255833|ref|ZP_05461369.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|256262077|ref|ZP_05464609.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9] gi|260167785|ref|ZP_05754596.1| peptide deformylase [Brucella sp. F5/99] gi|260545098|ref|ZP_05820919.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260565079|ref|ZP_05835564.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260567720|ref|ZP_05838189.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260756222|ref|ZP_05868570.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870] gi|260760409|ref|ZP_05872757.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292] gi|260763649|ref|ZP_05875981.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|260882046|ref|ZP_05893660.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|261216476|ref|ZP_05930757.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|261220844|ref|ZP_05935125.1| peptide deformylase [Brucella ceti B1/94] gi|261312913|ref|ZP_05952110.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|261318308|ref|ZP_05957505.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|261322743|ref|ZP_05961940.1| peptide deformylase [Brucella neotomae 5K33] gi|261750724|ref|ZP_05994433.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|261753980|ref|ZP_05997689.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|261757222|ref|ZP_06000931.1| peptide deformylase [Brucella sp. F5/99] gi|265986106|ref|ZP_06098663.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|265990325|ref|ZP_06102882.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|265992568|ref|ZP_06105125.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|265995800|ref|ZP_06108357.1| peptide deformylase [Brucella ceti M490/95/1] gi|294853988|ref|ZP_06794660.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] gi|297249202|ref|ZP_06932903.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196] gi|54036953|sp|P63914|DEF_BRUSU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|54040741|sp|P63913|DEF_BRUME RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189021687|gb|ACD74408.1| Formylmethionine deformylase [Brucella abortus S19] gi|260098369|gb|EEW82243.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260152722|gb|EEW87815.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260154385|gb|EEW89466.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260670727|gb|EEX57667.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292] gi|260674070|gb|EEX60891.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|260676330|gb|EEX63151.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870] gi|260871574|gb|EEX78643.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|260918083|gb|EEX84944.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|260919428|gb|EEX86081.1| peptide deformylase [Brucella ceti B1/94] gi|261297531|gb|EEY01028.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|261298723|gb|EEY02220.1| peptide deformylase [Brucella neotomae 5K33] gi|261301939|gb|EEY05436.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|261737206|gb|EEY25202.1| peptide deformylase [Brucella sp. F5/99] gi|261740477|gb|EEY28403.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|261743733|gb|EEY31659.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|262550097|gb|EEZ06258.1| peptide deformylase [Brucella ceti M490/95/1] gi|262763438|gb|EEZ09470.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|263000994|gb|EEZ13684.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|263091766|gb|EEZ16097.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9] gi|264658303|gb|EEZ28564.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|294819643|gb|EFG36643.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] gi|297173071|gb|EFH32435.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196] gi|326411197|gb|ADZ68261.1| peptide deformylase [Brucella melitensis M28] gi|326554488|gb|ADZ89127.1| peptide deformylase [Brucella melitensis M5-90] Length = 175 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 89/169 (52%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|17988608|ref|NP_541241.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|23500757|ref|NP_700197.1| peptide deformylase [Brucella suis 1330] gi|62317863|ref|YP_223716.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941] gi|83269841|ref|YP_419132.1| peptide deformylase [Brucella melitensis biovar Abortus 2308] gi|148557936|ref|YP_001257946.1| peptide deformylase [Brucella ovis ATCC 25840] gi|161621082|ref|YP_001594968.1| peptide deformylase [Brucella canis ATCC 23365] gi|163845148|ref|YP_001622803.1| peptide deformylase [Brucella suis ATCC 23445] gi|225629484|ref|ZP_03787517.1| peptide deformylase [Brucella ceti str. Cudo] gi|225686789|ref|YP_002734761.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|237817404|ref|ZP_04596396.1| peptide deformylase [Brucella abortus str. 2308 A] gi|256015794|ref|YP_003105803.1| peptide deformylase [Brucella microti CCM 4915] gi|17984410|gb|AAL53505.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|23464412|gb|AAN34202.1| polypeptide deformylase [Brucella suis 1330] gi|62198056|gb|AAX76355.1| Def-2, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941] gi|82940115|emb|CAJ13163.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus 2308] gi|148369221|gb|ABQ62093.1| peptide deformylase [Brucella ovis ATCC 25840] gi|161337893|gb|ABX64197.1| peptide deformylase [Brucella canis ATCC 23365] gi|163675871|gb|ABY39981.1| peptide deformylase [Brucella suis ATCC 23445] gi|225615980|gb|EEH13029.1| peptide deformylase [Brucella ceti str. Cudo] gi|225642894|gb|ACO02807.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|237788217|gb|EEP62433.1| peptide deformylase [Brucella abortus str. 2308 A] gi|255998454|gb|ACU50141.1| peptide deformylase [Brucella microti CCM 4915] Length = 187 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 89/169 (52%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 13 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 73 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 132 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 133 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 181 >gi|306840227|ref|ZP_07473002.1| peptide deformylase [Brucella sp. BO2] gi|306289832|gb|EFM61011.1| peptide deformylase [Brucella sp. BO2] Length = 175 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 89/169 (52%), Positives = 118/169 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|306846236|ref|ZP_07478798.1| peptide deformylase [Brucella sp. BO1] gi|306273487|gb|EFM55348.1| peptide deformylase [Brucella sp. BO1] Length = 175 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 89/169 (52%), Positives = 118/169 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKCSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMDADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|150395282|ref|YP_001325749.1| peptide deformylase [Sinorhizobium medicae WSM419] gi|150026797|gb|ABR58914.1| peptide deformylase [Sinorhizobium medicae WSM419] Length = 174 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E +++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 1 MTIKPLIILPDPVLRQVSTPVETVDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPK++ S++ SVY+EGCLSIPDY A+V+R A ITV Y+D + Sbjct: 61 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K + R Sbjct: 121 EQAVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169 >gi|163757845|ref|ZP_02164934.1| peptide deformylase [Hoeflea phototrophica DFL-43] gi|162285347|gb|EDQ35629.1| peptide deformylase [Hoeflea phototrophica DFL-43] Length = 172 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 95/169 (56%), Positives = 127/169 (75%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLV+ PDPILR+ S P+E++++++ ID+MLE MY GIGLAA+Q+GV RL+V Sbjct: 1 MTIKPLVLLPDPILRQQSLPVERVDAELEGFIDDMLETMYDAPGIGLAAIQVGVPRRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K+P VFINP+++ D SVY+EGCLSIPDY ADV+R ITV+Y+ + + Sbjct: 61 IDVAGKDEPKSPQVFINPEVVATGDGISVYEEGCLSIPDYYADVERPETITVKYLGRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ADGLLATCLQHE+DHLNG+LFIDH+S+LKRDM+ +K +KL + R Sbjct: 121 EHTTEADGLLATCLQHEIDHLNGVLFIDHISKLKRDMVVRKFTKLAKQR 169 >gi|86356069|ref|YP_467961.1| peptide deformylase [Rhizobium etli CFN 42] gi|86280171|gb|ABC89234.1| peptide deformylase protein [Rhizobium etli CFN 42] Length = 171 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 133/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SDD SVY+EGCLSIPDY A+V+R A ++V+Y+D + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDDRSVYEEGCLSIPDYYAEVERPATVSVKYLDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q++ ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + + Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169 >gi|153008675|ref|YP_001369890.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] gi|151560563|gb|ABS14061.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] Length = 175 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 92/169 (54%), Positives = 121/169 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLVI PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLVILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P VFINP+I+ +D+ S Y+EGCLSIPDY A+V+R A I V Y D + + Sbjct: 61 IDLAKEDEPKAPHVFINPEIVGVTDEVSTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +I ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 QHLIEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|254712790|ref|ZP_05174601.1| peptide deformylase [Brucella ceti M644/93/1] gi|254715859|ref|ZP_05177670.1| peptide deformylase [Brucella ceti M13/05/1] gi|261217620|ref|ZP_05931901.1| peptide deformylase [Brucella ceti M13/05/1] gi|261320497|ref|ZP_05959694.1| peptide deformylase [Brucella ceti M644/93/1] gi|260922709|gb|EEX89277.1| peptide deformylase [Brucella ceti M13/05/1] gi|261293187|gb|EEX96683.1| peptide deformylase [Brucella ceti M644/93/1] Length = 175 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 89/169 (52%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDALGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|23396548|sp|Q92SH6|DEF_RHIME RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase Length = 174 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E I++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 1 MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPK++ S++ SVY+EGCLSIPDY A+V+R A ITV Y+D + Sbjct: 61 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K + R Sbjct: 121 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 169 >gi|218672914|ref|ZP_03522583.1| peptide deformylase [Rhizobium etli GR56] Length = 171 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 134/169 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPILRQLSQPIERMDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q++ ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|239832661|ref|ZP_04680990.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] gi|239824928|gb|EEQ96496.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] Length = 175 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 89/166 (53%), Positives = 119/166 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLLILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P VFINP+I+ +D+ S Y+EGCLSIPDY A+V+R A I V Y D + + Sbjct: 61 IDLAKEGEPKAPHVFINPEIVGVTDEASTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL Sbjct: 121 PHAMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLA 166 >gi|15964172|ref|NP_384525.1| peptide deformylase [Sinorhizobium meliloti 1021] gi|307301317|ref|ZP_07581079.1| peptide deformylase [Sinorhizobium meliloti BL225C] gi|307317988|ref|ZP_07597425.1| peptide deformylase [Sinorhizobium meliloti AK83] gi|15073348|emb|CAC41856.1| Probable peptide deformylase [Sinorhizobium meliloti 1021] gi|306896390|gb|EFN27139.1| peptide deformylase [Sinorhizobium meliloti AK83] gi|306903773|gb|EFN34360.1| peptide deformylase [Sinorhizobium meliloti BL225C] Length = 178 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E I++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 5 MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPK++ S++ SVY+EGCLSIPDY A+V+R A ITV Y+D + Sbjct: 65 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K + R Sbjct: 125 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 173 >gi|110632755|ref|YP_672963.1| peptide deformylase [Mesorhizobium sp. BNC1] gi|122966266|sp|Q11LC7|DEF_MESSB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|110283739|gb|ABG61798.1| peptide deformylase [Chelativorans sp. BNC1] Length = 177 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 90/169 (53%), Positives = 128/169 (75%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV PDP+LR+VS+P+E+++ + +MLE MY GIGLAA+Q+G R++V Sbjct: 1 MAIRPLVTLPDPLLRQVSKPVERVDESLRKFAGDMLETMYDAPGIGLAAIQVGEPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + KNP VFINP+I++ SD S ++EGCLSIPDY A+V+R A +TV+Y+D + + Sbjct: 61 LDVAEKDEPKNPQVFINPEIVSRSDVPSFHEEGCLSIPDYYAEVERPAEVTVKYVDLDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 QI+ A G+LATCLQHE+DHLNG+LFID+LS+LKRDM+ +K KL + R Sbjct: 121 EQIVEAKGILATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFRKLAKDR 169 >gi|319780347|ref|YP_004139823.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166235|gb|ADV09773.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 176 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 95/169 (56%), Positives = 127/169 (75%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+VS+P+E++++ + L D+ML MY GIGLAA+QIG RL+V Sbjct: 1 MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL P VFINP+I+ +D SVY+EGCLSIPDY A+V+R A + V+Y+D + + Sbjct: 61 IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q I A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL + + Sbjct: 121 LQEIEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKKLARDK 169 >gi|118589715|ref|ZP_01547120.1| peptide deformylase [Stappia aggregata IAM 12614] gi|118437801|gb|EAV44437.1| peptide deformylase [Stappia aggregata IAM 12614] Length = 202 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 93/168 (55%), Positives = 121/168 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ PDP+LR V P+ ++ D+ L D+MLE MY GIGLAA QIG+L R+ V Sbjct: 31 MTIRPIITIPDPVLREVCAPVATVDDDVRKLADDMLETMYDAPGIGLAASQIGLLQRIFV 90 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K PMVFINPKI+ SDD SVYQEGCLSIPDY +V+R A +TV++++ Sbjct: 91 LDVAKDDAPKEPMVFINPKIVWSSDDLSVYQEGCLSIPDYYEEVERPAEVTVQFLNREGA 150 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K ++ Sbjct: 151 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKM 198 >gi|328545268|ref|YP_004305377.1| peptide deformylase 1 [polymorphum gilvum SL003B-26A1] gi|326415010|gb|ADZ72073.1| Peptide deformylase 1 [Polymorphum gilvum SL003B-26A1] Length = 172 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 89/170 (52%), Positives = 121/170 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++I PDP+LR+ P+ K++ I L D+MLE MY+ GIGLAA QIGVL RL V Sbjct: 1 MTKRDILIIPDPVLRQHCEPVVKVDDAIRKLADDMLETMYAAPGIGLAASQIGVLKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + PMVFINP+I+ S++ SVYQEGCLSIP+Y +V+R A + VR+ + + Sbjct: 61 LDVAKEDQPRAPMVFINPEIVWASEEMSVYQEGCLSIPEYYEEVERPASVRVRFFNRDGD 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + ADGLLATC+QHE DHLNG LFID+LS+LKRD + KK +K + + Sbjct: 121 EQELQADGLLATCIQHEYDHLNGRLFIDYLSKLKRDRVVKKFAKQARHAE 170 >gi|307943158|ref|ZP_07658503.1| peptide deformylase [Roseibium sp. TrichSKD4] gi|307773954|gb|EFO33170.1| peptide deformylase [Roseibium sp. TrichSKD4] Length = 196 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 93/168 (55%), Positives = 122/168 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ PD LR V P+E +++DI L D+M E MY+ GIGLAA QIGVL RL V Sbjct: 23 MTKRSILTIPDAQLREVCAPVETVDADIKALADDMFETMYAAPGIGLAASQIGVLKRLFV 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K+PMVFINPKI+ S+D SVYQEGCLSIPDY D++R A + V++++ + Sbjct: 83 LDVAKEDAPKDPMVFINPKIVWSSEDTSVYQEGCLSIPDYYEDIERPAKVRVQFLNRDGA 142 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + ADGLLATC+QHELDHL G LFID+LS+LKRD + KK +KL +L Sbjct: 143 EQEMEADGLLATCIQHELDHLYGRLFIDYLSKLKRDRVMKKFNKLAKL 190 >gi|110832992|ref|YP_691851.1| peptide deformylase [Alcanivorax borkumensis SK2] gi|122959726|sp|Q0VTE1|DEF_ALCBS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|110646103|emb|CAL15579.1| peptide deformylase [Alcanivorax borkumensis SK2] Length = 168 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 118/169 (69%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR V++P+EK++ ++ LID+M E MY+ GIGLAA Q+ V +L+V Sbjct: 1 MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMFETMYAAPGIGLAATQVDVHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + ++ PMVFINP+I +++ + Y+EGCLS+P + V R A + + +D + Sbjct: 61 MDLSEDHNK--PMVFINPQITPLTEEQAPYEEGCLSVPGFYEKVTRPARVRINALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ + + Sbjct: 119 AFEVEADELLATCIQHEMDHLDGKLFVDYVSRLKRDRIKKKLEKIHRQQ 167 >gi|222084707|ref|YP_002543236.1| peptide deformylase [Agrobacterium radiobacter K84] gi|221722155|gb|ACM25311.1| peptide deformylase [Agrobacterium radiobacter K84] Length = 171 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 135/169 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S+PIE+++++I+ L D+MLE MY GIGLAAVQIGV R++V Sbjct: 1 MTIKPLIILPDPLLRQASKPIERVDTEILRLADDMLETMYDAPGIGLAAVQIGVARRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+++ SD+ SVY+EGCLSIPDY A+V+R A +TV+++D + + Sbjct: 61 IDVAREGEDKQPLVFINPEVVASSDERSVYEEGCLSIPDYYAEVERPARVTVKHIDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q+I ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQLIEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|254429252|ref|ZP_05042959.1| peptide deformylase [Alcanivorax sp. DG881] gi|196195421|gb|EDX90380.1| peptide deformylase [Alcanivorax sp. DG881] Length = 168 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 79/169 (46%), Positives = 118/169 (69%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR V++P+EK++ ++ LID+M+E MY GIGLAA Q+ V RL+V Sbjct: 1 MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMIETMYDASGIGLAATQVNVHQRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P V+INP+I +D+ + Y+EGCLS+P + VKR+A + + +D + Sbjct: 61 MDLSE--ERNEPKVYINPQITPLTDELAPYEEGCLSVPGFYEKVKRAARVRINALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ + + Sbjct: 119 AFEVEADELLATCIQHEIDHLDGKLFVDYVSRLKRDRIKKKLEKIHRQQ 167 >gi|15887717|ref|NP_353398.1| peptide deformylase [Agrobacterium tumefaciens str. C58] gi|23396541|sp|Q8UID1|DEF_AGRT5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|15155278|gb|AAK86183.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58] Length = 170 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 96/169 (56%), Positives = 131/169 (77%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S+ IE+++++++ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQQSKLIEQVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+I+ SDD S Y+EGCLSIPDY A+V+R A +TV+Y+ + + Sbjct: 61 IDVAREGEEKTPVVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQYVGRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKRDM+ KK +K + + Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAARAK 169 >gi|49474898|ref|YP_032939.1| polypeptide deformylase [Bartonella henselae str. Houston-1] gi|81696215|sp|Q6G5F0|DEF_BARHE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|49237703|emb|CAF26892.1| Polypeptide deformylase [Bartonella henselae str. Houston-1] Length = 176 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 87/170 (51%), Positives = 126/170 (74%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PDPILR +S+P+E I+S + L D+MLE MY G+GLAA+QIG+ R++V Sbjct: 1 MPMRPLVIVPDPILREISKPVEYIDSAVQKLADDMLETMYHAQGVGLAAIQIGIPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + +KNP+V INP+++ SD+ ++Y+EGCLSIP+Y A+V+R + VRY + + Sbjct: 61 LDVSRNDEQKNPLVIINPEVLWLSDERNIYKEGCLSIPEYFAEVERPKRLCVRYQNREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I AD LLATCLQHE+DHLNG LFID+LS++KRDM+ +K K + ++ Sbjct: 121 QTEIEADDLLATCLQHEIDHLNGRLFIDYLSKIKRDMVIRKFKKRAKEKN 170 >gi|114705885|ref|ZP_01438788.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506] gi|114538731|gb|EAU41852.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506] Length = 173 Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 87/169 (51%), Positives = 124/169 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S P+ +++ + D+MLE MY GIGLAA+Q+G R++ Sbjct: 1 MTIKPLIILPDPVLRKTSEPVARVDDALKRFADDMLETMYEAPGIGLAAIQVGEPLRMLT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VF+NP+I++ S+DFSVY+EGCLSIP+Y A+V+R A ++VRY+ + + Sbjct: 61 IDISKEEEAKEPRVFLNPEIVSRSEDFSVYEEGCLSIPEYFAEVERPARVSVRYLGLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLATCLQHE+DHLNG+LFID+LS+LKRDM+ KK +K + + Sbjct: 121 MHEEEAEGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVIKKFTKAARTK 169 >gi|310815113|ref|YP_003963077.1| peptide deformylase [Ketogulonicigenium vulgare Y25] gi|308753848|gb|ADO41777.1| peptide deformylase [Ketogulonicigenium vulgare Y25] Length = 173 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 83/169 (49%), Positives = 116/169 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP LR +++P+ I+ +I L D+MLE MY GIGLA Q+G L R++V Sbjct: 1 MTTRPILIHPDPRLRAIAKPLPDISDEIRRLADDMLETMYDAPGIGLAGPQVGQLQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P+V +NP+I+ SDD SVY+EGCLSIPD A+V+R A + VR++D N Sbjct: 61 LDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGCLSIPDQYAEVERPASVKVRWLDLNGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q +GL ATC+QHE+DHL+G LFID+L +KR +IT+KM KL + R Sbjct: 121 EQDREMEGLWATCVQHEIDHLDGKLFIDYLGPMKRQLITRKMEKLKRER 169 >gi|325291800|ref|YP_004277664.1| polypeptide deformylase peptide deformylase [Agrobacterium sp. H13-3] gi|325059653|gb|ADY63344.1| polypeptide deformylase peptide deformylase [Agrobacterium sp. H13-3] Length = 170 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 100/169 (59%), Positives = 135/169 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ SRPIE+++++++ L D+MLE MY GIGLAA+Q+GV R++V Sbjct: 1 MTIKPLIILPDPVLRQQSRPIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+I+ SDD S Y+EGCLSIPDY A+V+R A +TVRY+D + + Sbjct: 61 IDVSREDEEKKPVVFINPEILRVSDDVSAYEEGCLSIPDYYAEVERPASLTVRYVDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 HQ++ ADGLLATCLQHE+DHLNGILFIDH+SRLKR+M+ KK +K + + Sbjct: 121 HQMVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIKKFTKAARAK 169 >gi|254501503|ref|ZP_05113654.1| peptide deformylase [Labrenzia alexandrii DFL-11] gi|222437574|gb|EEE44253.1| peptide deformylase [Labrenzia alexandrii DFL-11] Length = 189 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 96/168 (57%), Positives = 124/168 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+P++ PDP+LR V PIEK++++ + L D+MLE MY GIGLAA Q+G+L R+ V Sbjct: 18 MTKRPIITIPDPVLREVCAPIEKVDAETIALADDMLETMYDAPGIGLAASQVGILKRIFV 77 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K PMVFINP+II + D+ SVYQEGCLSIPDY DV+R A + V++MD Sbjct: 78 LDVAKEDAPKEPMVFINPEIIWYGDELSVYQEGCLSIPDYYEDVERPAEVAVKFMDREGA 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K +L Sbjct: 138 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKL 185 >gi|26986813|ref|NP_742238.1| peptide deformylase [Pseudomonas putida KT2440] gi|148545341|ref|YP_001265443.1| peptide deformylase [Pseudomonas putida F1] gi|32363155|sp|Q88RR1|DEF1_PSEPK RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|24981409|gb|AAN65702.1|AE016196_13 polypeptide deformylase [Pseudomonas putida KT2440] gi|148509399|gb|ABQ76259.1| peptide deformylase [Pseudomonas putida F1] gi|313496440|gb|ADR57806.1| Def [Pseudomonas putida BIRD-1] Length = 168 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAILNILEFPDPRLRTLAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP + + D YQEGCLS+P + +V R + V+ D + + Sbjct: 61 MDLSE--DRSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K + + Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167 >gi|167031105|ref|YP_001666336.1| peptide deformylase [Pseudomonas putida GB-1] gi|166857593|gb|ABY96000.1| peptide deformylase [Pseudomonas putida GB-1] Length = 168 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHLQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP + + D YQEGCLS+P + +V R + V+ D + + Sbjct: 61 MDLSE--DRSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K + + Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167 >gi|146305096|ref|YP_001185561.1| peptide deformylase [Pseudomonas mendocina ymp] gi|166198520|sp|A4XNB3|DEF_PSEMY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145573297|gb|ABP82829.1| peptide deformylase [Pseudomonas mendocina ymp] Length = 168 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 110/169 (65%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P++ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP+ + +D+ YQEGCLS+P + +V R + ++ +D + Q Sbjct: 61 MDLSE--DKSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + R Sbjct: 119 PFELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQR 167 >gi|170719274|ref|YP_001746962.1| peptide deformylase [Pseudomonas putida W619] gi|169757277|gb|ACA70593.1| peptide deformylase [Pseudomonas putida W619] Length = 168 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP + + D YQEGCLS+P + +V R + V+ D + + Sbjct: 61 MDLSE--DRSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K + + Sbjct: 119 PFELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167 >gi|170749551|ref|YP_001755811.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] gi|170656073|gb|ACB25128.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] Length = 171 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 85/167 (50%), Positives = 116/167 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PDP+LR S P+ I ++I L+ +M E MY G+GLAA+QIGV R+V Sbjct: 1 MTIRPLVILPDPVLRLGSEPVGPITAEIRTLVADMFETMYDAPGVGLAAIQIGVPKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID ++ VFINP+I+ S++ VY EGCLSIPDY A+V+R + V++ D + Sbjct: 61 IDTSKEEGVRDARVFINPEIVWSSEEKRVYDEGCLSIPDYYAEVERPDRVRVKFRDLDGT 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I ADGLL+TC+QHE+DHLNG+LFIDHLS+LKRD + KK +K + Sbjct: 121 EREIEADGLLSTCIQHEIDHLNGVLFIDHLSKLKRDRVIKKFTKAAK 167 >gi|330500987|ref|YP_004377856.1| peptide deformylase [Pseudomonas mendocina NK-01] gi|328915273|gb|AEB56104.1| peptide deformylase [Pseudomonas mendocina NK-01] Length = 168 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 110/169 (65%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P++ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP+ + +D+ YQEGCLS+P + +V R + ++ +D + Q Sbjct: 61 MDLSE--DKSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + R Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQR 167 >gi|90419800|ref|ZP_01227709.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1] gi|90335841|gb|EAS49589.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1] Length = 170 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 91/167 (54%), Positives = 123/167 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S+P+E ++ + L D+MLE MY GIGLAA+QIG R++V Sbjct: 1 MTIKPLIILPDPVLRQTSKPVETVDDQVRRLADDMLETMYDAPGIGLAAIQIGEPLRMMV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ P +F+NP+I+T SD SVY+EGCLSIPDY A+V+R A +TVRY+ + + Sbjct: 61 IDVSKEEEENAPRIFLNPEILTISDAVSVYEEGCLSIPDYYAEVERPAEVTVRYLGLDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADG+LATC+QHELDHLNG+LFIDH+S+LKRDM+ KK +K + Sbjct: 121 MHEETADGILATCVQHELDHLNGVLFIDHISKLKRDMVVKKFTKAAR 167 >gi|330806738|ref|YP_004351200.1| peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374846|gb|AEA66196.1| Peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 168 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 110/168 (65%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP+ T +D+ YQEGCLS+P + +V R + ++ +D + Q Sbjct: 61 MDLSE--DRSEPRVFINPEFETLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL + Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKLHRQ 166 >gi|68347834|gb|AAY95440.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5] Length = 213 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 46 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 105 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP+ +D+ YQEGCLS+P + +V R + ++ +D + Q Sbjct: 106 MDLSE--DRSEPRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQ 163 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 164 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQQ 212 >gi|319406474|emb|CBI80115.1| polypeptide deformylase [Bartonella sp. 1-1C] Length = 176 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 92/170 (54%), Positives = 123/170 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LVI PDPILR VS+P+E+I+ I L D+MLE MY+ GIGLAAVQ+GV R++V Sbjct: 1 MSIKSLVILPDPILREVSKPVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ KNP+V INP+I+ SD+ SVY+EGCLSIPDY A+V+R + + Y D + Sbjct: 61 VDIHPKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLCMCYRDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K K ++++ Sbjct: 121 QVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170 >gi|23009516|ref|ZP_00050535.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 171 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 86/167 (51%), Positives = 114/167 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR +S P+E + +I L +M+E MY G+GLAA+QIGV R+V Sbjct: 1 MTVRPLVILPDAQLRLISEPVEAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVPKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID KNP V++NP+I+ S++ VY EGCLSIP++ +V+R + VRYM + + Sbjct: 61 IDTSKDETAKNPTVYLNPEIVWASEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK SK + Sbjct: 121 TVEREADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFSKAAK 167 >gi|104779338|ref|YP_605836.1| peptide deformylase [Pseudomonas entomophila L48] gi|95108325|emb|CAK13019.1| peptide deformylase 1 [Pseudomonas entomophila L48] Length = 168 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP + + D YQEGCLS+P + +V R + V+ D + + Sbjct: 61 MDLSE--DRSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K + + Sbjct: 119 PYELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167 >gi|49473752|ref|YP_031794.1| polypeptide deformylase [Bartonella quintana str. Toulouse] gi|81696103|sp|Q6G1G6|DEF_BARQU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|49239255|emb|CAF25576.1| Polypeptide deformylase [Bartonella quintana str. Toulouse] Length = 176 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 88/170 (51%), Positives = 124/170 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR VS+P+E ++S I L D+MLE MY G+GLAA+QIG+ R++V Sbjct: 1 MPIKPLIILPDPILREVSKPVEHVDSTIQKLADDMLETMYDAQGVGLAAIQIGIPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +KNP+V INP+I+ SD+ ++ +EGCLSIP+Y +++R + VRY D + Sbjct: 61 IDVSRNETQKNPLVIINPEILWLSDERNICKEGCLSIPEYYTEIERPKRLCVRYQDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K K + ++ Sbjct: 121 QTEIEADHLLATCLQHEIDHLNGRLFIDHISKIKRDMVIRKFKKRAKEKN 170 >gi|116053739|ref|YP_788174.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|313111460|ref|ZP_07797261.1| polypeptide deformylase [Pseudomonas aeruginosa 39016] gi|115588960|gb|ABJ14975.1| polypeptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|310883763|gb|EFQ42357.1| polypeptide deformylase [Pseudomonas aeruginosa 39016] Length = 168 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP+ +++ YQEGCLS+P + +V R + ++ +D + Sbjct: 61 MDLSE--DKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167 >gi|254477024|ref|ZP_05090410.1| peptide deformylase [Ruegeria sp. R11] gi|214031267|gb|EEB72102.1| peptide deformylase [Ruegeria sp. R11] Length = 189 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 114/169 (67%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V + + + L D+MLE MY+ G+GLAA QIGVL RL+V+ Sbjct: 18 MKRPILIHPDPRLKKVCAEVPDLTDAMRTLADDMLETMYAAPGVGLAAPQIGVLDRLIVL 77 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NPKI++ SD+ +VY+EGCLSIPD A+V R + V +M+ + Sbjct: 78 DCAKEDEESPRPLVMFNPKIVSASDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMNRDGN 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 138 AARETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 186 >gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From Pseudomonas Aeruginosa gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From Pseudomonas Aeruginosa gi|47168958|pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide Deformylase Inhibitors gi|47168959|pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide Deformylase Inhibitors Length = 180 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 13 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP+ +++ YQEGCLS+P + +V R + ++ +D + Sbjct: 73 MDLSE--DKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 131 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 179 >gi|192358847|ref|YP_001984035.1| peptide deformylase [Cellvibrio japonicus Ueda107] gi|238692437|sp|B3PGY7|DEF_CELJU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|190685012|gb|ACE82690.1| peptide deformylase [Cellvibrio japonicus Ueda107] Length = 169 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 74/164 (45%), Positives = 103/164 (62%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR V++P+ +++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLPILEFPDPRLRTVAKPVTQVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+VFINP+I ++ S Y EGCLS+P + V+R I V+ +D Sbjct: 61 IDVSE--DKSQPLVFINPEIEVLDEELSQYDEGCLSVPGFYETVERPGHIRVKALDRAGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GLLA C+QHELDHLNG LF+DH+S KR I K+ K Sbjct: 119 AFELQPQGLLAVCIQHELDHLNGKLFVDHISPFKRSRIRSKLEK 162 >gi|49081366|gb|AAT50122.1| PA0019 [synthetic construct] Length = 169 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + Sbjct: 61 MDLSE--DKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167 >gi|326388512|ref|ZP_08210106.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370] gi|326206977|gb|EGD57800.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370] Length = 189 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 83/187 (44%), Positives = 114/187 (60%), Gaps = 20/187 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L++VS+P+E + ++ L+ +M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAIREILEVPDPRLKQVSKPVEVFDDELKTLVADMFETMYDAPGIGLAAIQVGVPLRVLV 60 Query: 61 IDLQDHAH--------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 IDLQ +K P+VFINP + + S+D +VY EGCLS+P+ Sbjct: 61 IDLQPDDPDAEPEVCTAHGGHHHTHQPTKKEPLVFINPVLSSLSEDLAVYNEGCLSVPEI 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+V R + I R+ D + D LLATCLQHE+DHL GILFIDHLSRLKR M K Sbjct: 121 YAEVTRPSRIHARWQDLDGNVHEAEIDDLLATCLQHEMDHLEGILFIDHLSRLKRQMALK 180 Query: 161 KMSKLVQ 167 K+ KL + Sbjct: 181 KLEKLRR 187 >gi|163738219|ref|ZP_02145635.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] gi|163743813|ref|ZP_02151186.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161382962|gb|EDQ07358.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161388835|gb|EDQ13188.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] Length = 172 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 83/169 (49%), Positives = 115/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V + ++ + L D+MLE MY+ GIGLAA QIGVL RL+V+ Sbjct: 1 MKRPILIHPDPRLKKVCAAVPDMSDALRTLADDMLETMYAAPGIGLAAPQIGVLDRLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP+++ SD+ +VY+EGCLSIPD A+V R + V +MD + Sbjct: 61 DCVKEEDGPARPLVMFNPEVVASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + R Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|77456245|ref|YP_345750.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] gi|77380248|gb|ABA71761.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] Length = 168 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP+ + +D+ YQEGCLS+P + +V R + ++ +D + + Sbjct: 61 MDLSE--DRTEPRVFINPEFESLTDEMEQYQEGCLSVPGFYENVDRPQKVKIKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166 >gi|237749120|ref|ZP_04579600.1| peptide deformylase [Oxalobacter formigenes OXCC13] gi|229380482|gb|EEO30573.1| peptide deformylase [Oxalobacter formigenes OXCC13] Length = 208 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 111/168 (66%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ +PDP L + SRP+ + +LI +M + MY G+GLAA QI V +L+V Sbjct: 30 MARLPILRYPDPRLLKPSRPVTDFGDSLKSLIADMAQTMYEAPGVGLAAPQINVHKQLIV 89 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ S++ ++++EGCLS+P +++R A +TVR +D N + Sbjct: 90 IDVSEQ--KNELRVFINPQIVKASEEKAIFEEGCLSLPGIYDEIERPAKVTVRALDANGK 147 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K + Sbjct: 148 EFELEAEGLLAVCVQHEIDHLKGSIFVDYLSPMKRNRIKKKLLKEERE 195 >gi|319898269|ref|YP_004158362.1| polypeptide deformylase [Bartonella clarridgeiae 73] gi|319402233|emb|CBI75766.1| polypeptide deformylase [Bartonella clarridgeiae 73] Length = 171 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 91/170 (53%), Positives = 125/170 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLVI PDPILR VS+P+E I+S I L D+MLE MY+ GIGLAAVQ+GV R++V Sbjct: 1 MPIKPLVILPDPILREVSKPVEHIDSIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ KNP+V INP+I+ S++ ++Y+EGCLSIP+Y A+V+R ++ + Y D + Sbjct: 61 LDISSKDAPKNPLVVINPEILWISNERNIYREGCLSIPEYYAEVERPKYLRICYRDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K K + ++ Sbjct: 121 QAEIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKFKKRAKKQN 170 >gi|226942187|ref|YP_002797260.1| peptide deformylase [Azotobacter vinelandii DJ] gi|259645177|sp|C1DFV8|DEF_AZOVD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|226717114|gb|ACO76285.1| Formylmethionine deformylase protein [Azotobacter vinelandii DJ] Length = 168 Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++PIE ++ I LID+M E MY+ GIGLAA Q+ V RLVV Sbjct: 1 MAILTILEFPDPRLRTIAKPIETVDDGIRRLIDDMFETMYAAPGIGLAATQVNVHKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP+ +++ YQEGCLS+P + +V R + +R +D + Q Sbjct: 61 MDLSE--DKNEPRVFINPEFEALTEELEPYQEGCLSVPGFYENVDRPQKVRIRALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + Sbjct: 119 PFELVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166 >gi|146280418|ref|YP_001170571.1| peptide deformylase [Pseudomonas stutzeri A1501] gi|158514117|sp|A4VFH8|DEF_PSEU5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145568623|gb|ABP77729.1| polypeptide deformylase [Pseudomonas stutzeri A1501] gi|327478634|gb|AEA81944.1| peptide deformylase [Pseudomonas stutzeri DSM 4166] Length = 168 Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P++ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP+ +D YQEGCLS+P + +V R + ++ +D + + Sbjct: 61 MDLSE--DRSEPRVFINPEFEPLTDQMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K+ + + Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEKIHRQQ 167 >gi|84685501|ref|ZP_01013399.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654] gi|84666658|gb|EAQ13130.1| peptide deformylase [Rhodobacterales bacterium HTCC2654] Length = 173 Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 83/170 (48%), Positives = 117/170 (68%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++I PDP L++ + + + +++ L D+MLE MY GIGLAA Q+GVL RL+V Sbjct: 1 MALKPILIHPDPRLKKEAEKVRDVTDELLTLADDMLETMYDAPGIGLAAPQVGVLQRLIV 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D +D + P+V NP++I SDD +VY+EGCLSIPD A+V R A + VR+++ Sbjct: 61 LDCIKDESAEPQPLVMFNPEVILSSDDTNVYEEGCLSIPDQYAEVTRPAAVKVRWLNRAG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q +GL ATC+QHE+DHLNG LFID+LS +KR MIT+K KL + R Sbjct: 121 EEQERDFEGLWATCVQHEIDHLNGKLFIDYLSPMKRQMITRKSQKLKRER 170 >gi|15595217|ref|NP_248709.1| peptide deformylase [Pseudomonas aeruginosa PAO1] gi|107099012|ref|ZP_01362930.1| hypothetical protein PaerPA_01000019 [Pseudomonas aeruginosa PACS2] gi|218888765|ref|YP_002437629.1| peptide deformylase [Pseudomonas aeruginosa LESB58] gi|254237739|ref|ZP_04931062.1| polypeptide deformylase [Pseudomonas aeruginosa C3719] gi|254243131|ref|ZP_04936453.1| polypeptide deformylase [Pseudomonas aeruginosa 2192] gi|296386491|ref|ZP_06875990.1| peptide deformylase [Pseudomonas aeruginosa PAb1] gi|17432949|sp|Q9I7A8|DEF_PSEAE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase [Pseudomonas aeruginosa PAO1] gi|126169670|gb|EAZ55181.1| polypeptide deformylase [Pseudomonas aeruginosa C3719] gi|126196509|gb|EAZ60572.1| polypeptide deformylase [Pseudomonas aeruginosa 2192] gi|218768988|emb|CAW24746.1| polypeptide deformylase [Pseudomonas aeruginosa LESB58] Length = 168 Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + Sbjct: 61 MDLSE--DKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167 >gi|254510174|ref|ZP_05122241.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] gi|221533885|gb|EEE36873.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] Length = 172 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 84/169 (49%), Positives = 113/169 (66%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V P+ I D+ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRNILIHPDPRLKKVCAPVADITDDLRKLADDMLETMYDAPGIGLAAPQIGVLDRLIVV 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP++I SD+ +VY+EGCLSIPD A+V R + V +MD + Sbjct: 61 DCVKEEGETPRPLVMFNPQVIASSDEINVYEEGCLSIPDQYAEVTRPRTVDVTWMDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q D L ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + + Sbjct: 121 LQQETFDDLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKREK 169 >gi|299132603|ref|ZP_07025798.1| peptide deformylase [Afipia sp. 1NLS2] gi|298592740|gb|EFI52940.1| peptide deformylase [Afipia sp. 1NLS2] Length = 189 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 83/168 (49%), Positives = 117/168 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD LR VS P++KI +I L ++M E MY GIGLAA+Q+ V RL+ Sbjct: 19 MAIREIISIPDKRLRLVSEPVDKITPEIRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 78 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P VFINP+I++ SDD SVY+EGCLSIP+Y +V+R A + +RYMD + + Sbjct: 79 MDVSKKEGEKVPRVFINPEILSKSDDVSVYEEGCLSIPEYYEEVERPASVRIRYMDLDGK 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GL ATC+QHE+DH+NG+LFID+LS+LKRD + KK +K +L Sbjct: 139 VHEEDAEGLFATCIQHEIDHINGVLFIDYLSKLKRDRVMKKFTKAAKL 186 >gi|126738021|ref|ZP_01753742.1| peptide deformylase [Roseobacter sp. SK209-2-6] gi|126720518|gb|EBA17223.1| peptide deformylase [Roseobacter sp. SK209-2-6] Length = 172 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 79/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P++I PDP L++ P+ ++ + L D+MLE MY+ GIGLAA QIG++ RL+V+ Sbjct: 1 MKHPILIHPDPRLKKTCVPVADLSDKLRILADDMLETMYAAPGIGLAAPQIGIMQRLIVL 60 Query: 62 DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + P+V NP+I+ S++ +VY+EGCLSIP+ A+V R + VR++D + Sbjct: 61 DCEKEEGSSGKPLVMFNPEILASSEETNVYEEGCLSIPEQFAEVTRPKVVDVRWIDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 EQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|294678913|ref|YP_003579528.1| peptide deformylase [Rhodobacter capsulatus SB 1003] gi|294477733|gb|ADE87121.1| peptide deformylase-2 [Rhodobacter capsulatus SB 1003] Length = 178 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 110/169 (65%), Gaps = 1/169 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP L+++ P+ ++ I L D+MLE MY G+GLAA QIGV+ R+ V Sbjct: 3 MTTRPILIHPDPRLKKLCDPVAALDDTIRQLADDMLETMYDAPGVGLAAPQIGVMSRIFV 62 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D ++ MV INP+I S++ +V++EGCLS+P+ ADV R + +R++ + Sbjct: 63 MDCAKEKTGFPEAMVMINPEITWVSEEKNVHEEGCLSLPEQYADVTRPKEVRMRWLGLDG 122 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q DGL ATC QHELDHLNG LFIDHL LKR M+T+K+ KL + Sbjct: 123 QMHEEQFDGLWATCAQHELDHLNGKLFIDHLGPLKRQMVTRKLEKLKRE 171 >gi|319407942|emb|CBI81596.1| polypeptide deformylase [Bartonella schoenbuchensis R1] Length = 174 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 91/167 (54%), Positives = 123/167 (73%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 K LV PDPILR VS+P+E+I+ I L D+MLE MY GIGLAA+Q+GV R++VID+ Sbjct: 2 KSLVTLPDPILREVSKPVEQIDLAIQKLADDMLETMYHAQGIGLAAIQVGVPLRMLVIDI 61 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 ++ KNP+V INP+I+ SD+ ++Y+EGCLSIP+Y A V+R + VRY D + Sbjct: 62 AENNTPKNPLVVINPEILWLSDERNIYKEGCLSIPEYYAQVERPKRLRVRYSDREGKQTE 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K+ K + +D Sbjct: 122 IEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKLKKRAKEKD 168 >gi|169123281|gb|ACA47112.1| peptide deformylase [Pseudomonas putida] Length = 168 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP++ +DD YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSE--DRTEPRVFINPELEPLTDDMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL + Sbjct: 119 PYELIAEDLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKLHRQ 166 >gi|161501956|ref|YP_257174.2| peptide deformylase [Pseudomonas fluorescens Pf-5] Length = 168 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP+ +D+ YQEGCLS+P + +V R + ++ +D + Q Sbjct: 61 MDLSE--DRSEPRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQQ 167 >gi|119383399|ref|YP_914455.1| peptide deformylase [Paracoccus denitrificans PD1222] gi|119373166|gb|ABL68759.1| peptide deformylase [Paracoccus denitrificans PD1222] Length = 173 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 111/170 (65%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +++ PDP L+++ P+ +I +I L +ML MY G+GLAA Q+GVL RL V Sbjct: 1 MTLRSIILHPDPRLKKICEPVARITPEIETLAADMLATMYDAPGVGLAAPQVGVLSRLYV 60 Query: 61 IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D + D +NP+V +NP++ S+ + Y+EGCLSIP+ ADV R A + VR++ + Sbjct: 61 MDCEKDPEAPRNPIVMVNPEVTWTSEALNTYEEGCLSIPEQYADVTRPAEVRVRWLGLDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GL ATC QHE+DHL+G LFIDHL +KR MIT+KM KL + R Sbjct: 121 KTHEREFEGLWATCAQHEIDHLDGRLFIDHLGPIKRQMITRKMVKLKRER 170 >gi|296447194|ref|ZP_06889124.1| peptide deformylase [Methylosinus trichosporium OB3b] gi|296255253|gb|EFH02350.1| peptide deformylase [Methylosinus trichosporium OB3b] Length = 179 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 86/166 (51%), Positives = 113/166 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ PDP LR VS P+ I+++I L+D+MLE MY G+GLAA+Q+ V R++V Sbjct: 1 MAIRPIITLPDPRLRLVSEPVAVIDAEIRQLLDDMLETMYDAPGVGLAAIQVAVAKRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D KNPMVFINP+I+ S++ VYQEGCLS+PDY +V+R A + V ++D Sbjct: 61 ADATRGDEPKNPMVFINPQIVWASEELGVYQEGCLSVPDYFEEVQRPARVRVSFLDREGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I ADGLLAT LQHE+DHL G LFIDHLSRLKR+ + KK K Sbjct: 121 TCEIEADGLLATVLQHEIDHLEGGLFIDHLSRLKRERVVKKFVKAA 166 >gi|34809567|pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase Complexed With Antibiotic Actinonin gi|34809568|pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase Complexed With Antibiotic Actinonin Length = 171 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + Sbjct: 61 MDLSE--DKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167 >gi|152988653|ref|YP_001345416.1| peptide deformylase [Pseudomonas aeruginosa PA7] gi|150963811|gb|ABR85836.1| peptide deformylase [Pseudomonas aeruginosa PA7] Length = 168 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP+ +++ YQEGCLS+P + +V R + ++ +D + + Sbjct: 61 MDLSE--DKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGRLFVDYLSTLKRDRIRKKLEKQHRQQ 167 >gi|260432735|ref|ZP_05786706.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] gi|260416563|gb|EEX09822.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] Length = 172 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 87/168 (51%), Positives = 118/168 (70%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V P++ ++ ++ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRNILIHPDPRLKKVCAPVDDLSDELRALADDMLETMYDAPGIGLAAPQIGVLERLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP+II+ SD+ SVY+EGCLSIPD A+V R A + V +MD N + Sbjct: 61 DCVKEEGATPRPLVMFNPEIISASDETSVYEEGCLSIPDQFAEVTRPAEVEVAWMDQNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q DGL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRE 168 >gi|83309342|ref|YP_419606.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum AMB-1] gi|82944183|dbj|BAE49047.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum AMB-1] Length = 190 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 117/170 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP+L+ S+P+ ++ I L+ +ML+ MY GIGLAA QIGVL R++V Sbjct: 21 MAVLPILTAPDPVLKSKSKPVATVDDRIRTLLADMLDTMYHAPGIGLAAPQIGVLERVIV 80 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P+ +NP+I+ SD+ + Y+EGCLS+P++ ++V R A + VRY+D Sbjct: 81 MDIGRKEEDRAPIRMVNPEIVWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 140 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q I ADGLLAT +QHE+DHL+GILFIDHLS LKR+MI +K+ K + + Sbjct: 141 KQEILADGLLATVVQHEMDHLDGILFIDHLSSLKRNMILRKLLKARKESE 190 >gi|89070116|ref|ZP_01157446.1| peptide deformylase [Oceanicola granulosus HTCC2516] gi|89044337|gb|EAR50480.1| peptide deformylase [Oceanicola granulosus HTCC2516] Length = 176 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 82/170 (48%), Positives = 115/170 (67%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+P++I PDP L+ + P+ +I ++ L D+MLE MY GIGLAA Q+GVL R++V Sbjct: 4 MTKRPILIHPDPRLKTAATPVGEITDEVRRLADDMLETMYDAPGIGLAAPQVGVLKRVLV 63 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D +D P+V +P+I+ SD +VY+EGCLSIPD A+V+R A + VR+ D Sbjct: 64 MDCVKDEGEAPRPLVLCDPEIVWTSDARNVYEEGCLSIPDQYAEVERPAEVEVRWTDLEG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + + Sbjct: 124 GARRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKREK 173 >gi|163851063|ref|YP_001639106.1| peptide deformylase [Methylobacterium extorquens PA1] gi|218529893|ref|YP_002420709.1| peptide deformylase [Methylobacterium chloromethanicum CM4] gi|240138197|ref|YP_002962669.1| peptide deformylase [Methylobacterium extorquens AM1] gi|254560757|ref|YP_003067852.1| peptide deformylase [Methylobacterium extorquens DM4] gi|163662668|gb|ABY30035.1| peptide deformylase [Methylobacterium extorquens PA1] gi|218522196|gb|ACK82781.1| peptide deformylase [Methylobacterium chloromethanicum CM4] gi|240008166|gb|ACS39392.1| peptide deformylase [Methylobacterium extorquens AM1] gi|254268035|emb|CAX23906.1| peptide deformylase [Methylobacterium extorquens DM4] Length = 171 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 85/167 (50%), Positives = 114/167 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR S P+ + +I L +M+E MY G+GLAA+QIGV R+V Sbjct: 1 MTVRPLVILPDAQLRLTSEPVAAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + KNP V++NP+I+ S++ VY EGCLSIP++ +V+R + VRYM+ + Q Sbjct: 61 IDTSKDENAKNPTVYLNPEIVWVSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMNLDGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K + Sbjct: 121 IVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167 >gi|260426170|ref|ZP_05780149.1| peptide deformylase [Citreicella sp. SE45] gi|260420662|gb|EEX13913.1| peptide deformylase [Citreicella sp. SE45] Length = 176 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 86/170 (50%), Positives = 121/170 (71%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L+++ P+ ++ D+ L D+MLE MY GIGLAA Q+G+L+RL+V+ Sbjct: 4 MKRPILIHPDPRLKKLCDPVADLSDDLRTLADDMLETMYDAPGIGLAAPQVGILHRLIVL 63 Query: 62 DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D QD+ P+V INP+I+ SD+ SVY+EGCLSIPD ADV+R + V ++D + Sbjct: 64 DCAKQDNGETPRPLVMINPRILASSDERSVYEEGCLSIPDQYADVERPKMVEVEWLDRDG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 124 KLQKEEFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRER 173 >gi|163867376|ref|YP_001608570.1| peptide deformylase [Bartonella tribocorum CIP 105476] gi|189083066|sp|A9ILK4|DEF_BART1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|161017017|emb|CAK00575.1| polypeptide deformylase [Bartonella tribocorum CIP 105476] Length = 178 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 88/172 (51%), Positives = 126/172 (73%), Gaps = 2/172 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + LV PDPILR VS+P+E++++ + L D+MLE MY GIGLAA+QIG+ R++V Sbjct: 1 MPMRSLVTLPDPILREVSKPVEQVDTALQELADDMLETMYHAKGIGLAAIQIGIPLRMLV 60 Query: 61 IDLQDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+ +A +K P+V INP+I+ SD+ +VY+EGCLSIPDY A+V+R + VRY + Sbjct: 61 IDVSGNAEDTQKKPLVIINPEILWLSDERNVYKEGCLSIPDYFAEVERPKRLRVRYQNRE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + I AD LLATCLQHE+DHL+G LFID++SR+KRDM+ +K K + ++ Sbjct: 121 GKQKEIEADDLLATCLQHEIDHLDGRLFIDYISRIKRDMVIRKFKKRAKEKN 172 >gi|319404989|emb|CBI78592.1| polypeptide deformylase [Bartonella sp. AR 15-3] Length = 171 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 88/167 (52%), Positives = 120/167 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLVI PDPILR VS+P+E I+ I L D+MLE MY+ G+GLAAVQ+G+ R++V Sbjct: 1 MSIKPLVILPDPILREVSKPVEHIDPIIQKLADDMLETMYNAQGVGLAAVQVGIPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ KN +V INP+I+ SD+ SVY+EGCLSIP+Y A+V+R + + Y + + Sbjct: 61 VDISPKDAPKNSLVVINPEILWISDERSVYREGCLSIPEYFAEVERPKCLRISYKNREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K K + Sbjct: 121 QEEIEANDLLATCLQHEIDHLNGYLFIDHISKTKRDMVIRKFKKRAK 167 >gi|254467295|ref|ZP_05080706.1| peptide deformylase [Rhodobacterales bacterium Y4I] gi|206688203|gb|EDZ48685.1| peptide deformylase [Rhodobacterales bacterium Y4I] Length = 182 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 85/169 (50%), Positives = 116/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V + ++ D+ L D+MLE MY+ GIGLAA QIG+L RL+V+ Sbjct: 11 MKRPILIHPDPRLKKVCAAVPDLSDDLRVLADDMLETMYAAPGIGLAAPQIGILQRLIVL 70 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP+II SD+ +VY+EGCLSIPD A+V R + V +MD + Sbjct: 71 DCVKEEDGDPRPLVMFNPEIIASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRSGN 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + R Sbjct: 131 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 179 >gi|330720123|gb|EGG98527.1| Peptide deformylase [gamma proteobacterium IMCC2047] Length = 168 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR + PI ++ I L D+MLE MY GIGLAA Q+ V R+VV Sbjct: 1 MALLPILEFPDPRLRNKALPINDVDDSIRKLADDMLETMYYAPGIGLAATQVNVQKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+VFINP++ D F EGCLS+P + V+R I VR D N + Sbjct: 61 IDVSE--DKSQPLVFINPEVEVIGDGFEEMDEGCLSVPGFYETVQRPDHIKVRAQDRNGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I DG+LA C+QHE+DHL+G LF+D+LS LKR I KK+ K+ + R Sbjct: 119 TFEIEDDGMLAVCIQHEIDHLDGKLFVDYLSPLKRQRIRKKLEKIHRQR 167 >gi|188580852|ref|YP_001924297.1| peptide deformylase [Methylobacterium populi BJ001] gi|179344350|gb|ACB79762.1| peptide deformylase [Methylobacterium populi BJ001] Length = 171 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 84/167 (50%), Positives = 114/167 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR +S P+ + +I L +M+E MY G+GLAA+QIGV R+V Sbjct: 1 MTVRPLVILPDAQLRLISEPVGTVTEEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + KNP V++NP+I+ S++ VY EGCLSIP++ +V+R + VRYM + + Sbjct: 61 IDTSKDENAKNPTVYLNPEIVWSSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K + Sbjct: 121 TVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167 >gi|240849749|ref|YP_002971137.1| polypeptide deformylase [Bartonella grahamii as4aup] gi|240266872|gb|ACS50460.1| polypeptide deformylase [Bartonella grahamii as4aup] Length = 178 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 86/172 (50%), Positives = 124/172 (72%), Gaps = 2/172 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + LV PDPILR VS+P+++++S + L D+MLE MY+ GIGLAA+QIG+ R++V Sbjct: 1 MPMRSLVTLPDPILREVSKPVDQVDSALQKLADDMLETMYNAKGIGLAAIQIGIPLRMLV 60 Query: 61 IDLQDH--AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+ + RK P V INP+I+ SD+ ++Y+EGCLSIPDY A+V+R + VRY + Sbjct: 61 IDVSGNSEDERKKPFVIINPEILWLSDERNIYKEGCLSIPDYFAEVERPKRLCVRYQNRE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + I AD LLATCLQHE+DHL+G LFID++S++KRDM+ +K K + ++ Sbjct: 121 GKQTEIEADDLLATCLQHEIDHLDGRLFIDYISKIKRDMVIRKFKKRAKEKN 172 >gi|86137254|ref|ZP_01055832.1| peptide deformylase [Roseobacter sp. MED193] gi|85826578|gb|EAQ46775.1| peptide deformylase [Roseobacter sp. MED193] Length = 172 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 115/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K ++I PDP L+++ P+ ++ + L D+MLE MY+ GIGLAA QIGV+ RL+V+ Sbjct: 1 MKHSILIHPDPRLKKICAPVADLSDKLRLLADDMLETMYAAPGIGLAAPQIGVMERLIVL 60 Query: 62 DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P+V NP+II+ S++ +VY+EGCLSIPD A+V R + V+++D N Sbjct: 61 DCEKEEGVEPKPLVMFNPEIISSSEETNVYEEGCLSIPDQYAEVTRPRDVEVQWLDRNGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 QQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|158422422|ref|YP_001523714.1| polypeptide or peptide deformylase family protein [Azorhizobium caulinodans ORS 571] gi|158329311|dbj|BAF86796.1| polypeptide or peptide deformylase family protein [Azorhizobium caulinodans ORS 571] Length = 172 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 87/167 (52%), Positives = 119/167 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++I P+P LR++S P+ +I+ +I L +MLE MY GIGLAA+Q+GV R++ Sbjct: 1 MAILPILIIPEPQLRQISAPVPRIDKEIEKLAADMLETMYDAPGIGLAAIQVGVHKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ KNP+V INP++++ S++ S Y EGCLSIP+Y +V+R A +TVRY D Sbjct: 61 IDIAREDAPKNPIVLINPEVVSASEETSFYNEGCLSIPEYYEEVERPAQVTVRYQDLKGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I ADGLLATCLQHE+DHLNG+LFIDHLSRLKR+ + KK +K + Sbjct: 121 THEIAADGLLATCLQHEIDHLNGVLFIDHLSRLKRERVIKKFTKAAR 167 >gi|296114064|ref|YP_003628002.1| peptide deformylase [Moraxella catarrhalis RH4] gi|295921758|gb|ADG62109.1| peptide deformylase [Moraxella catarrhalis RH4] gi|326559449|gb|EGE09872.1| peptide deformylase [Moraxella catarrhalis 7169] gi|326561289|gb|EGE11648.1| peptide deformylase [Moraxella catarrhalis 46P47B1] gi|326565177|gb|EGE15368.1| peptide deformylase [Moraxella catarrhalis 103P14B1] gi|326566131|gb|EGE16288.1| peptide deformylase [Moraxella catarrhalis BC1] gi|326572198|gb|EGE22194.1| peptide deformylase [Moraxella catarrhalis BC7] gi|326572807|gb|EGE22792.1| peptide deformylase [Moraxella catarrhalis CO72] gi|326574626|gb|EGE24562.1| peptide deformylase [Moraxella catarrhalis 101P30B1] Length = 184 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 107/170 (62%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR +++P+ + + LI++M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL +P VFINPK+ D+ S YQEGCLS+P+ ++R + + + +D + Q Sbjct: 61 MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+GLLA C+QHE+DHLNG LF+D+LS LK+ K+ K ++ R+ Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170 >gi|209886650|ref|YP_002290507.1| peptide deformylase [Oligotropha carboxidovorans OM5] gi|229487488|sp|B6JJP8|DEF_OLICO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|209874846|gb|ACI94642.1| peptide deformylase [Oligotropha carboxidovorans OM5] Length = 171 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 84/168 (50%), Positives = 117/168 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD LRRVS P+EKI S++ L ++M E MY GIGLAA+Q+ V RL+ Sbjct: 1 MAIREIISIPDKRLRRVSEPVEKITSEVRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P VFINP+I++ S+D +VY+EGCLSIP+Y +V+R A + VR+MD + Sbjct: 61 MDLAKKEGESAPRVFINPEILSKSEDIAVYEEGCLSIPEYYEEVERPASVRVRFMDLEGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K +L Sbjct: 121 VHEEDAEGLFATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKL 168 >gi|302186428|ref|ZP_07263101.1| peptide deformylase [Pseudomonas syringae pv. syringae 642] Length = 168 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 110/168 (65%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLATC+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLATCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|289209433|ref|YP_003461499.1| peptide deformylase [Thioalkalivibrio sp. K90mix] gi|288945064|gb|ADC72763.1| peptide deformylase [Thioalkalivibrio sp. K90mix] Length = 177 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 74/164 (45%), Positives = 106/164 (64%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ FPDP LR + P+E ++ +I L+D+MLE MY GIGLAA QI V R++V Sbjct: 1 MAKREILHFPDPRLRLKAEPVETVDDEIRTLVDDMLETMYDAPGIGLAATQINVQKRVLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D + P V INP+I+ S + EGCLS+P + V+R+ I VR + + + Sbjct: 61 ADVSD--DQSEPHVLINPEILETSGE-EEMDEGCLSVPGFYEKVQRADRIRVRALGRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K Sbjct: 118 PFELDIDGLLAVCIQHEIDHLDGKLFVDYLSSLKRNRIRKKLEK 161 >gi|255261213|ref|ZP_05340555.1| peptide deformylase [Thalassiobium sp. R2A62] gi|255103548|gb|EET46222.1| peptide deformylase [Thalassiobium sp. R2A62] Length = 173 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 1/169 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP L++ + + + + + L D+ML+ MY GIGLAA QIGV+ R+ V Sbjct: 1 MSIRPILIHPDPRLKKRADEVTEFDDALCVLGDDMLDTMYDAPGIGLAAPQIGVMSRVFV 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D ++ PMV +NP+I SD+ + Y EGCLSIP+ A+V R A + V + D Sbjct: 61 MDCVKEEGEEPKPMVLVNPEITWTSDEMNTYDEGCLSIPEQYAEVDRPAEVKVTWQDVEG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + Sbjct: 121 TQYEAQFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRE 169 >gi|326567834|gb|EGE17938.1| peptide deformylase [Moraxella catarrhalis 12P80B1] gi|326568164|gb|EGE18246.1| peptide deformylase [Moraxella catarrhalis BC8] gi|326573749|gb|EGE23707.1| peptide deformylase [Moraxella catarrhalis O35E] Length = 184 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 107/170 (62%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR +++P+ + + LI++M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL +P VFINPK+ D+ S YQEGCLS+P+ ++R + + + +D + Q Sbjct: 61 MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+GLLA C+QHE+DHLNG LF+D+LS LK+ K+ K ++ R+ Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170 >gi|66043290|ref|YP_233131.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a] gi|63253997|gb|AAY35093.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae B728a] gi|330957385|gb|EGH57645.1| peptide deformylase [Pseudomonas syringae pv. maculicola str. ES4326] gi|330970343|gb|EGH70409.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 168 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|77464452|ref|YP_353956.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1] gi|126463292|ref|YP_001044406.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|221640344|ref|YP_002526606.1| peptide deformylase [Rhodobacter sphaeroides KD131] gi|332559341|ref|ZP_08413663.1| Peptide deformylase [Rhodobacter sphaeroides WS8N] gi|77388870|gb|ABA80055.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1] gi|126104956|gb|ABN77634.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|221161125|gb|ACM02105.1| Peptide deformylase [Rhodobacter sphaeroides KD131] gi|332277053|gb|EGJ22368.1| Peptide deformylase [Rhodobacter sphaeroides WS8N] Length = 177 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 114/169 (67%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P++I PDP L+++ P+ +I D+ L D+ML MY GIGLAA Q+GV+ RL+V+ Sbjct: 1 MIRPILIHPDPRLKKICDPVGQITDDLRRLADDMLATMYDAPGIGLAAPQVGVVRRLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ + P+ +NP+++ S+D S Y+EGCLS+P+ ADV+R A + VR+ + + Sbjct: 61 DCNKESDGARRPVAMVNPEVVWRSEDVSTYEEGCLSLPNVFADVERPAEVKVRWTGLDGR 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + GL ATC+QHE+DHL+G LFID+L LKR MIT+KM K + + Sbjct: 121 EEEEQFAGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKFKRAQ 169 >gi|259417507|ref|ZP_05741426.1| peptide deformylase [Silicibacter sp. TrichCH4B] gi|259346413|gb|EEW58227.1| peptide deformylase [Silicibacter sp. TrichCH4B] Length = 174 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 78/169 (46%), Positives = 116/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++++ + ++ ++ L D+MLE MY+ GIGLAA QIG+L RL+V+ Sbjct: 1 MKRSILIHPDPRLKKIAADVPDLSDELRALADDMLETMYAAPGIGLAAPQIGILDRLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP++I SD+ +VY+EGCLSIP+ A+V R + V ++D + Sbjct: 61 DCVKEGEGEARPLVMFNPRVIAASDETNVYEEGCLSIPEQYAEVTRPKVVDVEWLDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|71737781|ref|YP_272335.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558334|gb|AAZ37545.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326682|gb|EFW82727.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076] gi|320331344|gb|EFW87287.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 168 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D N + Sbjct: 61 MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRNGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|255319595|ref|ZP_05360807.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262380781|ref|ZP_06073934.1| peptide deformylase [Acinetobacter radioresistens SH164] gi|255303350|gb|EET82555.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262297729|gb|EEY85645.1| peptide deformylase [Acinetobacter radioresistens SH164] Length = 176 Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTLAKPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPKI ++D Y+EGCLS+P V+R + + + ++ Sbjct: 61 MDLSE--EKNQPMVFINPKITPLTEDTQPYEEGCLSVPQIYDKVERPSRVKIEALNLEGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ KLV+ R Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRSR 167 >gi|146276205|ref|YP_001166364.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] gi|145554446|gb|ABP69059.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] Length = 177 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 111/169 (65%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++I PDP L+++ P+ +I D+ L D+ML MY GIGLAA Q+GV+ RLVV+ Sbjct: 1 MIRSILIHPDPRLKKICDPVAEITDDLRRLADDMLATMYDAPGIGLAAPQVGVMRRLVVM 60 Query: 62 DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P+ INP+++ S+D S Y+EGCLS+P+ A+V+R A + VR+ + + Sbjct: 61 DCNKQPEAPRRPIAMINPQVVWASEDLSTYEEGCLSLPNVFAEVERPAEVKVRWTGIDGR 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + GL ATC+QHE+DHL+G LFID+L LKR MIT+KM K + + Sbjct: 121 EEEEQFSGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKFRRAQ 169 >gi|126733797|ref|ZP_01749544.1| Peptide deformylase [Roseobacter sp. CCS2] gi|126716663|gb|EBA13527.1| Peptide deformylase [Roseobacter sp. CCS2] Length = 173 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 78/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PDP L++V+ P+ +N D+ L D+MLE MY GIGLAA QI V+ R++V Sbjct: 1 MALRNILIHPDPRLKKVATPVPSVNDDLRRLADDMLETMYDAPGIGLAAPQIAVMNRMLV 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D ++ PMV INP+++ S++ +VY+EGCLSIP+ A+V+R + V + + + Sbjct: 61 MDCAKEDDATPEPMVLINPEVVWTSEEQNVYEEGCLSIPEQYAEVERPTEVEVTWTNLDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + Sbjct: 121 QAKRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRE 169 >gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase Complexed With Antibiotic Actinonin Length = 167 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 2/168 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV+ Sbjct: 1 AILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + Sbjct: 61 DLSE--DKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNP 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 FEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 166 >gi|319403561|emb|CBI77143.1| polypeptide deformylase [Bartonella rochalimae ATCC BAA-1498] Length = 176 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 91/170 (53%), Positives = 122/170 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LVI PDPILR VS+ +E+I+ I L D+MLE MY+ GIGLAAVQ+GV R++V Sbjct: 1 MSIKSLVILPDPILREVSKLVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ KNP+V INP+I+ SD+ SVY+EGCLSIPDY A+V+R + + Y D + Sbjct: 61 VDIHSKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLRMCYRDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K K ++++ Sbjct: 121 QVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170 >gi|257485584|ref|ZP_05639625.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627009|ref|ZP_06459963.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647926|ref|ZP_06479269.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250] gi|330867901|gb|EGH02610.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890232|gb|EGH22893.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020] gi|330985723|gb|EGH83826.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011873|gb|EGH91929.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 168 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|332185304|ref|ZP_08387053.1| peptide deformylase [Sphingomonas sp. S17] gi|332015028|gb|EGI57084.1| peptide deformylase [Sphingomonas sp. S17] Length = 173 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 86/173 (49%), Positives = 121/173 (69%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PDP LR VS+P+E ++ + L+ +M+E MY GIGLAA+Q+GV R++V Sbjct: 1 MAILPIVEVPDPRLRLVSKPVEAVDDSVRQLVTDMIETMYDAHGIGLAAIQVGVDKRVLV 60 Query: 61 IDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 IDLQ+ KNP +INP+I++ S++ S Y EGCLSIP+ A+VKR A V+++ Sbjct: 61 IDLQEEEDEEGKPVKNPKAYINPEILSVSEELSTYNEGCLSIPEQYAEVKRPARCQVKWL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + DGLLATC+QHE+DHLNG+LFIDH+SRLKRDM+ +K+SK+ + Sbjct: 121 DEKGEAHEAEFDGLLATCMQHEMDHLNGVLFIDHVSRLKRDMLMRKLSKIRKG 173 >gi|312958120|ref|ZP_07772643.1| peptide deformylase [Pseudomonas fluorescens WH6] gi|311287551|gb|EFQ66109.1| peptide deformylase [Pseudomonas fluorescens WH6] Length = 212 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ + L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 45 MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 104 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P V+INP+ +D+ YQEGCLS+P++ +V+R + ++ +D + + Sbjct: 105 MDLSE--DRSEPRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGK 162 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 163 PFEMIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKKHRQQ 211 >gi|87200909|ref|YP_498166.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444] gi|123763380|sp|Q2G491|DEF_NOVAD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|87136590|gb|ABD27332.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444] Length = 188 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 85/186 (45%), Positives = 121/186 (65%), Gaps = 19/186 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L++VS P+EK + ++ L+++M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAIREIIEVPDPRLKQVSVPVEKFDDELKTLVEDMFETMYDAPGIGLAAIQVGVPLRVLV 60 Query: 61 IDLQDHAH-------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 IDLQ +K P VFINP+I+ S+++SVYQEGCLS+P+ Sbjct: 61 IDLQPDDPDAEPVACDHDGHHHHHQPTKKEPRVFINPEILDPSEEYSVYQEGCLSVPEIY 120 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 A+V+R A I R+ D + + +GL+ATCLQHE+DHL G+LFIDHLSRLKR+M KK Sbjct: 121 AEVERPATIRARWQDLDGKVHEEQMEGLMATCLQHEMDHLEGVLFIDHLSRLKRNMALKK 180 Query: 162 MSKLVQ 167 + KL + Sbjct: 181 LEKLRK 186 >gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213968425|ref|ZP_03396568.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] gi|301384287|ref|ZP_07232705.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13] gi|302060151|ref|ZP_07251692.1| peptide deformylase [Pseudomonas syringae pv. tomato K40] gi|302130424|ref|ZP_07256414.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|32363153|sp|Q88B43|DEF1_PSESM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213926713|gb|EEB60265.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] gi|331017687|gb|EGH97743.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 168 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTLAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSE--DRSAPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|298484627|ref|ZP_07002731.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160851|gb|EFI01868.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 168 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSE--DRSEPRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|304320578|ref|YP_003854221.1| peptide deformylase [Parvularcula bermudensis HTCC2503] gi|303299480|gb|ADM09079.1| peptide deformylase [Parvularcula bermudensis HTCC2503] Length = 170 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 81/164 (49%), Positives = 115/164 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V PDP LR +S P++ ++ ++ L+D+MLE MY+ GIGLAA+QIGV R++V Sbjct: 1 MTIRPIVTAPDPRLREISTPVDGVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P F+NP I + D + YQEGCLS+PDY +++R A TV Y+D + Sbjct: 61 MDLAGEGEPPAPRYFVNPVIRNPATDLAPYQEGCLSVPDYYEEIERPATCTVDYLDYDGT 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A+GLLATC+QHE+DHL G+LFIDHLSRLKR+ I KK+ + Sbjct: 121 PRTLEAEGLLATCIQHEMDHLEGVLFIDHLSRLKRERILKKLKR 164 >gi|121602173|ref|YP_989567.1| peptide deformylase [Bartonella bacilliformis KC583] gi|158513863|sp|A1UUB4|DEF_BARBK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|120614350|gb|ABM44951.1| peptide deformylase [Bartonella bacilliformis KC583] Length = 182 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 123/176 (69%), Gaps = 6/176 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLVI PDPILR +S+P+E I+S I L D+MLE MY+ GIGLAA+Q+G+ R++V Sbjct: 1 MPIKPLVILPDPILREISKPVEHIDSTIQQLADDMLETMYNAGGIGLAAIQVGIPLRMLV 60 Query: 61 IDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +D+ + ++P++ INP+I+ SD+ ++ EGCLSIP Y A+V+R + +RY Sbjct: 61 VDVSIFTSIFEPDAPQDPIIVINPEILWLSDERNICMEGCLSIPGYSAEVERPKRLCIRY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + + I AD +LATCLQHE+DHLNG LFIDHLS++KR+M+ +K K + + Sbjct: 121 RNREGEQKEIEADNILATCLQHEIDHLNGCLFIDHLSKVKRNMVIRKFEKRAKENN 176 >gi|99082420|ref|YP_614574.1| peptide deformylase [Ruegeria sp. TM1040] gi|99038700|gb|ABF65312.1| peptide deformylase [Ruegeria sp. TM1040] Length = 174 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 116/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++++ + ++ D+ L D+MLE MY+ GIGLAA QIGVL RL+V+ Sbjct: 1 MKRSILIHPDPRLKKIATDVPDLSDDLRALADDMLETMYAAPGIGLAAPQIGVLDRLIVM 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP++I SD+ +VY+EGCLSIP+ A+V R + V +MD + Sbjct: 61 DCVKEGEGDARPLVMFNPRVIASSDETNVYEEGCLSIPEQYAEVTRPKVVDVEWMDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|167950832|ref|ZP_02537906.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 194 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P+ +++ I L+D+M E MY GIGLAA Q+ V +++V Sbjct: 19 MAILDILHFPDSRLRNKAKPVSQVDDAIRKLVDDMFETMYEAPGIGLAATQVNVAKQIIV 78 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + P+ INP+I++ + EGCLS+P VKR+A I+VR +D + Sbjct: 79 IDLSE--EKNQPLCLINPEILSKEGE-EKMDEGCLSVPGIYESVKRAARISVRALDRDGA 135 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GLLA C+QHE+DHLNG LF+D+LS LKR I K++ K +LR Sbjct: 136 PFELETEGLLAVCIQHEIDHLNGKLFVDYLSSLKRQRIRKRLEKESRLR 184 >gi|89052957|ref|YP_508408.1| peptide deformylase [Jannaschia sp. CCS1] gi|88862506|gb|ABD53383.1| peptide deformylase [Jannaschia sp. CCS1] Length = 174 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P++I PDP L++V+ P+ + ++ L DNML MY GIGLAA Q+GV RL+V+ Sbjct: 1 MKLPILIHPDPRLKKVAAPVPDVTDELRALADNMLSTMYDAPGIGLAAPQVGVGQRLIVL 60 Query: 62 DLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P+ NP++I SD+ + Y EGCLSIPD ADV R +TVR+MD N Sbjct: 61 DCEKGDDVTPRPLAMFNPEVIASSDEMNTYDEGCLSIPDIYADVTRPEAVTVRWMDVNGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL G LFID+LS LKR +IT+KM KL + R Sbjct: 121 EQEETFDGLWATCVQHEIDHLEGKLFIDYLSGLKRQLITRKMVKLKRDR 169 >gi|103485746|ref|YP_615307.1| peptide deformylase [Sphingopyxis alaskensis RB2256] gi|98975823|gb|ABF51974.1| peptide deformylase [Sphingopyxis alaskensis RB2256] Length = 180 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 87/175 (49%), Positives = 118/175 (67%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR +S+P+E ++++ L+ +M E MY GIGLAA+Q+GV R++V Sbjct: 4 MAILPIIETPDPRLRVISKPVETFDAELKQLVADMFETMYDAPGIGLAAIQVGVPKRILV 63 Query: 61 IDLQDHAHR--------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 IDLQ+ + P VFINP FSD+ SVYQEGCLS+P+ ADV R A +TV Sbjct: 64 IDLQEADPEDPEGKKVIRTPRVFINPVFSDFSDEHSVYQEGCLSVPEQYADVTRPAEVTV 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + D + +H GL+ATC+QHE DHL GILFIDHLSRLKR+M+ KK++KL + Sbjct: 124 DWQDEDGKHHQERMTGLMATCIQHEHDHLEGILFIDHLSRLKREMVLKKLAKLRK 178 >gi|88705378|ref|ZP_01103089.1| Formylmethionine deformylase [Congregibacter litoralis KT71] gi|88700468|gb|EAQ97576.1| Formylmethionine deformylase [Congregibacter litoralis KT71] Length = 168 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V++P+E ++ D+ LIDNM+E MY GIGLAA Q+ V RL+V Sbjct: 1 MAVLDILEFPDPRLRTVAKPVESVDDDLRALIDNMIETMYEASGIGLAATQVNVHKRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + +R PMVFINP++ D Y EGCLS+P + +V R + V + + + Sbjct: 61 LDISE--NRDQPMVFINPEVTVLDDTLGSYDEGCLSVPGFYEEVNRPRKVRVEALGRDGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DGL A CLQHE+DHL+G LF+D++S LKR+ I K+ K +LR Sbjct: 119 SFSQELDGLAAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167 >gi|330901114|gb|EGH32533.1| peptide deformylase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937252|gb|EGH41267.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B] gi|330976422|gb|EGH76478.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 168 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R PMV INP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSE--DRSEPMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|330876380|gb|EGH10529.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965122|gb|EGH65382.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 168 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|260752714|ref|YP_003225607.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552077|gb|ACV75023.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 177 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 85/174 (48%), Positives = 116/174 (66%), Gaps = 4/174 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR S +E + ++ LID+M E MY GIGLAA+Q+GV RL+V Sbjct: 1 MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60 Query: 61 IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 IDL +D ++NPMVFINP++ ++ +Y EGCLS+PD A+V+R + I ++ D Sbjct: 61 IDLQQPEEDGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K +LR+ Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174 >gi|23016537|ref|ZP_00056292.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 170 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 117/170 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP+L+ S+P+ ++ I L+ +MLE MY GIGLAA QIGVL R++V Sbjct: 1 MAVLPILTAPDPVLKSKSKPVAAVDDRIRALLADMLETMYHAPGIGLAAPQIGVLERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P+ +NP+II SD+ + Y+EGCLS+P++ ++V R A + VRY+D Sbjct: 61 MDIGRKEEDRAPIRMVNPEIIWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + A+GLLAT +QHE+DHL+G+LFIDHLS LKR+MI +K+ K + + Sbjct: 121 KQELLAEGLLATVVQHEMDHLDGVLFIDHLSSLKRNMILRKLLKARKEAE 170 >gi|331007625|ref|ZP_08330767.1| Peptide deformylase [gamma proteobacterium IMCC1989] gi|330418565|gb|EGG93089.1| Peptide deformylase [gamma proteobacterium IMCC1989] Length = 166 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 104/168 (61%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ FPD LR V++P+ ++ +ID+M E MY+ GIGLAA Q+ + +++V Sbjct: 1 MAQLPILEFPDARLRTVAKPVAEVTDATRRIIDDMFETMYAAPGIGLAATQVNIHQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP I ++ Y EGCLS+P + V+R I V +D N Sbjct: 61 MDLSE--DKSEPQVFINPSITVQGEELDSYDEGCLSVPGFYESVERPKSIKVEAIDRNGS 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 II +GLLA C+QHE+DHLNG LF+D+LS +KR I KK+ K + Sbjct: 119 PFIIEPEGLLAVCIQHEIDHLNGKLFVDYLSNMKRQRIRKKLEKQQRG 166 >gi|94495737|ref|ZP_01302317.1| polypeptide deformylase [Sphingomonas sp. SKA58] gi|94425125|gb|EAT10146.1| polypeptide deformylase [Sphingomonas sp. SKA58] Length = 176 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ PDP LR +S ++ I+ D+ LID+M + MY GIGLAA+Q+GV R++V Sbjct: 1 MAIRPILEAPDPRLRTISTRVDAIDDDLQTLIDDMFDTMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDLQDHA-------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 IDLQ+ KNPMVFINP+I+ SDD SVY EGCLS+PD A+V+R + I Sbjct: 61 IDLQEPESDEEGAPPVKNPMVFINPEILKGSDDLSVYNEGCLSVPDQFAEVERPSVIRAS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +MD + +GLLATCLQHE+DHL GILFIDHLSRLKRDM+ KK++K + Sbjct: 121 WMDREGRIHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRDMLMKKLNKARR 174 >gi|90019670|ref|YP_525497.1| peptide deformylase [Saccharophagus degradans 2-40] gi|123090994|sp|Q21PV5|DEF_SACD2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|89949270|gb|ABD79285.1| peptide deformylase [Saccharophagus degradans 2-40] Length = 172 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 106/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+ K++ I LID+M E MY GIGLAA Q+ V +++V Sbjct: 1 MALLPILEFPDPRLRTIAKPVAKVDQRIRTLIDDMFETMYDAPGIGLAATQVNVHEQVLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + K PMVFINP I + Y+EGCLS+P + V R I V +D + + Sbjct: 61 IDLGE--ETKEPMVFINPSIEILDQEHYEYEEGCLSVPGFYEQVSRPKHIRVTALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +I +GLLA C+QHE+DHLNG LF+D++S +KR I KK+ K + Sbjct: 119 EFVIEPEGLLAVCVQHEMDHLNGKLFVDYVSNIKRQRIRKKLEKQHRQ 166 >gi|254515964|ref|ZP_05128024.1| peptide deformylase [gamma proteobacterium NOR5-3] gi|219675686|gb|EED32052.1| peptide deformylase [gamma proteobacterium NOR5-3] Length = 168 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V++P+E ++ + LIDNMLE MY+ GIGLAA Q+ V RL+V Sbjct: 1 MAVLDILEFPDPRLRTVAKPVEVVDDALRTLIDNMLETMYAASGIGLAATQVNVHQRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +R +PM+FINP++ D Y EGCLS+P + +V R I V + + + Sbjct: 61 LDTSE--NRDSPMIFINPQVTILDDTLGSYDEGCLSVPGFYEEVNRPRTIRVEALGRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGL A CLQHE+DHL+G LF+D++S LKR+ I K+ K +LR Sbjct: 119 AFSLELDGLTAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167 >gi|330813514|ref|YP_004357753.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063] gi|327486609|gb|AEA81014.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063] Length = 170 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 82/170 (48%), Positives = 118/170 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PDPILR+ S P++++N +I L+ NMLE MY+ GIGLAAVQ+G+L R++V Sbjct: 1 MSILTIVKEPDPILRKKSLPVKEVNGEIKKLMKNMLETMYAAPGIGLAAVQVGILKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+ F+NPKI+ SD QEGCLSIP + ++KR V+Y+D + + Sbjct: 61 IDISGETSLKKPIFFVNPKIVWKSDILETKQEGCLSIPGHFGNIKRPEACHVKYLDYSGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + ADGLLATC+QHE+DH NG LFID+LS+LK+ I KK++K + ++ Sbjct: 121 EKTLKADGLLATCIQHEIDHCNGTLFIDYLSKLKKAFIIKKLTKAQKNQE 170 >gi|56551709|ref|YP_162548.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4] gi|241762296|ref|ZP_04760377.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|81789136|sp|Q9REQ2|DEF_ZYMMO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|6685122|gb|AAF23793.1|AF213822_8 polypeptide deformylase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543283|gb|AAV89437.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4] gi|241373199|gb|EER62829.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 177 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 85/174 (48%), Positives = 115/174 (66%), Gaps = 4/174 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR S +E + ++ LID+M E MY GIGLAA+Q+GV RL+V Sbjct: 1 MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60 Query: 61 IDLQDHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 IDLQ ++NPMVFINP++ ++ +Y EGCLS+PD A+V+R + I ++ D Sbjct: 61 IDLQQPEEGGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K +LR+ Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174 >gi|56698051|ref|YP_168422.1| peptide deformylase [Ruegeria pomeroyi DSS-3] gi|56679788|gb|AAV96454.1| peptide deformylase [Ruegeria pomeroyi DSS-3] Length = 172 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 80/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V P+ I+ ++ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRAILIHPDPRLKKVCAPVADISDELRALADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ + P+V NP+++ SD+ ++Y+EGCLSIP+ A+V R + V ++D + + Sbjct: 61 DCVKEESAPARPLVMFNPRVVAASDETNIYEEGCLSIPEQYAEVTRPKVVDVEWIDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 LQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|262376937|ref|ZP_06070164.1| peptide deformylase [Acinetobacter lwoffii SH145] gi|262308282|gb|EEY89418.1| peptide deformylase [Acinetobacter lwoffii SH145] Length = 176 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAQPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + ++ PMVFINPKI +++ Y+EGCLS+P V R + + + ++ Q Sbjct: 61 MDLSE--NKDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ KLV+ R+ Sbjct: 119 AFELDADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRQRN 168 >gi|85711005|ref|ZP_01042066.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145] gi|85695409|gb|EAQ33346.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145] Length = 173 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PD LR V++PIE+++ + ID+M E MY + G+GLAA Q+ V RL V Sbjct: 1 MTKLTVLKYPDERLRTVAQPIEQVDDALRATIDDMFETMYESQGVGLAATQVDVHQRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + ++ P+VFINP+I T S+ +EGCLS P+ A V+R+ ITV+ +D N + Sbjct: 61 ADCSE--NQNEPLVFINPEI-TRSEGHFTNEEGCLSFPNVFAKVERAESITVQALDKNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K +L++ Sbjct: 118 RFSMDAEGLLAICVQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLQE 167 >gi|89092291|ref|ZP_01165245.1| peptide deformylase [Oceanospirillum sp. MED92] gi|89083379|gb|EAR62597.1| peptide deformylase [Oceanospirillum sp. MED92] Length = 171 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP LR ++ P+ ++ +I ID+M E MY+ GIGLAA Q+ + R+V Sbjct: 1 MAKLTILEYPDPRLRTIAEPVSEVTDEIRAQIDDMFETMYAAPGIGLAATQVNIHKRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + P+V INP+ ++ YQEGCLS+P + DVKR I ++ +D N + Sbjct: 61 MDISD--DQNEPLVLINPEFEVIDEELHKYQEGCLSVPGFYEDVKRPQKIKLKALDYNGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A+GLLA C+QHELDHLNG LF+D+LS LKR+ I K+ K+ + ++ Sbjct: 119 AYELEAEGLLAVCIQHELDHLNGKLFVDYLSMLKRNRIKGKLEKIHKQQE 168 >gi|169797633|ref|YP_001715426.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii AYE] gi|184156510|ref|YP_001844849.1| peptide deformylase [Acinetobacter baumannii ACICU] gi|213155573|ref|YP_002317618.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|215484987|ref|YP_002327228.1| peptide deformylase [Acinetobacter baumannii AB307-0294] gi|239503032|ref|ZP_04662342.1| peptide deformylase [Acinetobacter baumannii AB900] gi|260557576|ref|ZP_05829790.1| peptide deformylase [Acinetobacter baumannii ATCC 19606] gi|301346868|ref|ZP_07227609.1| peptide deformylase [Acinetobacter baumannii AB056] gi|301512296|ref|ZP_07237533.1| peptide deformylase [Acinetobacter baumannii AB058] gi|301594510|ref|ZP_07239518.1| peptide deformylase [Acinetobacter baumannii AB059] gi|332852665|ref|ZP_08434319.1| peptide deformylase [Acinetobacter baumannii 6013150] gi|332869381|ref|ZP_08438759.1| peptide deformylase [Acinetobacter baumannii 6013113] gi|332875644|ref|ZP_08443456.1| peptide deformylase [Acinetobacter baumannii 6014059] gi|169150560|emb|CAM88469.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii AYE] gi|183208104|gb|ACC55502.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU] gi|193076056|gb|ABO10651.2| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii ATCC 17978] gi|213054733|gb|ACJ39635.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|213986809|gb|ACJ57108.1| peptide deformylase [Acinetobacter baumannii AB307-0294] gi|260408749|gb|EEX02053.1| peptide deformylase [Acinetobacter baumannii ATCC 19606] gi|322506378|gb|ADX01832.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2] gi|323516246|gb|ADX90627.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715] gi|332729133|gb|EGJ60480.1| peptide deformylase [Acinetobacter baumannii 6013150] gi|332732799|gb|EGJ64015.1| peptide deformylase [Acinetobacter baumannii 6013113] gi|332736217|gb|EGJ67232.1| peptide deformylase [Acinetobacter baumannii 6014059] Length = 176 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +M E MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPK+ +++ Y+EGCLS+P V R + + + ++ Q Sbjct: 61 MDLSES--KDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKIVRQRE 168 >gi|237801646|ref|ZP_04590107.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024505|gb|EGI04561.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 168 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYEMVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|169632177|ref|YP_001705913.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii SDF] gi|238688145|sp|B0VNL8|DEF_ACIBS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169150969|emb|CAO99588.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii] Length = 176 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 111/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +M E MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPK+ +++ Y+EGCLS+P V R + + + ++ Q Sbjct: 61 MDLSES--KDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHLNG LF+D+LS LKR + +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRVREKVEKIVRQRE 168 >gi|262371336|ref|ZP_06064654.1| peptide deformylase 1 [Acinetobacter johnsonii SH046] gi|262313673|gb|EEY94722.1| peptide deformylase 1 [Acinetobacter johnsonii SH046] Length = 177 Score = 224 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR ++ P+E++ +I L +M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAEPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + H+ P+VFINPK+ +++ Y+EGCLS+P V+R + + + ++ Q Sbjct: 61 MDLSE--HKDQPLVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I AD LLA C+QHE+DHLNG LF+D+LS LKR +K+ KL + R Sbjct: 119 AFEIEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLTRQR 167 >gi|84500579|ref|ZP_00998828.1| peptide deformylase [Oceanicola batsensis HTCC2597] gi|84391532|gb|EAQ03864.1| peptide deformylase [Oceanicola batsensis HTCC2597] Length = 172 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P++I PDP L++V+ P+ I ++ D+MLE MY GIGLA QIG++ RL+V+ Sbjct: 1 MIRPILIHPDPRLKKVAEPVADITDELRTTADDMLETMYDAPGIGLAGPQIGLMARLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP+++ SD+ SVY+EGCLSIPD A+V+R A +TV ++D + Sbjct: 61 DCVKEETLPPRPLVMFNPRVVASSDEKSVYEEGCLSIPDQYAEVERPAEVTVEWLDRDGV 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHLNG LFID++S +KR MIT+KM KL + R Sbjct: 121 LQEESFDGLWATCVQHEIDHLNGKLFIDYISPIKRQMITRKMQKLKRER 169 >gi|149913450|ref|ZP_01901983.1| peptide deformylase [Roseobacter sp. AzwK-3b] gi|149812570|gb|EDM72399.1| peptide deformylase [Roseobacter sp. AzwK-3b] Length = 174 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 83/169 (49%), Positives = 116/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V P+ ++ D+ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRPILIHPDPRLKKVCAPLGDLSDDLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVM 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P+V NP+I+ SD +VY+EGCLSIP+ A+VKR + VR++D + Sbjct: 61 DCVKGENETPRPLVMFNPEIVASSDVMNVYEEGCLSIPEEYAEVKRPEAVDVRWIDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHLNG LFID+L +KR MIT++M KL + + Sbjct: 121 EQTETFDGLWATCVQHEIDHLNGKLFIDYLGPMKRQMITRRMQKLKREQ 169 >gi|296284446|ref|ZP_06862444.1| peptide deformylase [Citromicrobium bathyomarinum JL354] Length = 190 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 87/186 (46%), Positives = 119/186 (63%), Gaps = 21/186 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++ PDP L+ VS+P+E + + D+ L+D+M E MY+ +GIGLAA+Q+GV R+ Sbjct: 1 MAIREILEVPDPRLKTVSQPVEAGEFDDDLRTLVDDMFETMYAANGIGLAAIQVGVPKRI 60 Query: 59 VVIDLQDHAH-------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 +VIDLQ +K P VFINP+I+ +++ + YQEGCLS+PD Sbjct: 61 LVIDLQPEDPDAEPIECDHDGHKHTHPATKKEPRVFINPEILDPNEELATYQEGCLSVPD 120 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 ADV R A TVR+ D + + +GLLATC+QHE+DHL GILFIDHLSRLKR M Sbjct: 121 IYADVDRPATCTVRWKDLDGKEHTEAMEGLLATCIQHEMDHLEGILFIDHLSRLKRQMAL 180 Query: 160 KKMSKL 165 KK+ KL Sbjct: 181 KKLKKL 186 >gi|149925345|ref|ZP_01913609.1| peptide deformylase [Limnobacter sp. MED105] gi|149825462|gb|EDM84670.1| peptide deformylase [Limnobacter sp. MED105] Length = 169 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 104/169 (61%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L+ V+ P+ + + ++ L +M E MY G+GLAA Q+ V R++V Sbjct: 1 MALLPILRYPDPRLKTVATPVTQFDDALVKLTQDMAETMYDAPGVGLAATQVNVHKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + VFINP+II S + VY+EGCLS+P V+R + VR + + Sbjct: 61 IDVTD--DKSGLTVFINPEIIDASKECKVYEEGCLSVPGIYEKVERPDTVKVRAQNVKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I D LLA C+QHE+DHLNG +F+++LS+LK+ I KM K +L+ Sbjct: 119 WFEIDCDELLAVCIQHEIDHLNGKVFVEYLSQLKQTRIKTKMKKQDKLQ 167 >gi|262281295|ref|ZP_06059076.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202] gi|262257121|gb|EEY75858.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202] Length = 176 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +MLE MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDHHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + P+VFINPKI ++D Y+EGCLS+P V+R + + + ++ Q Sbjct: 61 IDLSEA--KDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|13474065|ref|NP_105633.1| peptide deformylase [Mesorhizobium loti MAFF303099] gi|23396550|sp|Q98D52|DEF_RHILO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|14024817|dbj|BAB51419.1| N-formylmethionylaminoacyl-tRNA deformylase [Mesorhizobium loti MAFF303099] Length = 176 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 88/158 (55%), Positives = 121/158 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+VS+P+E++++ + L D+ML MY GIGLAA+QIG R++V Sbjct: 1 MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL P VFINP+I+ ++ SVY+EGCLSIPDY A+V+R A + V+Y+D + + Sbjct: 61 IDLAKEDETPAPHVFINPEILESAEARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMV 158 >gi|299771931|ref|YP_003733957.1| peptide deformylase [Acinetobacter sp. DR1] gi|298702019|gb|ADI92584.1| peptide deformylase [Acinetobacter sp. DR1] Length = 176 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +MLE MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + P+VFINPKI ++D Y+EGCLS+P V+R + + + ++ Q Sbjct: 61 IDLSEA--KDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|222147432|ref|YP_002548389.1| peptide deformylase [Agrobacterium vitis S4] gi|221734422|gb|ACM35385.1| peptide deformylase [Agrobacterium vitis S4] Length = 176 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 97/158 (61%), Positives = 123/158 (77%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++I PDP+LR VS+PIE+I++D+ LID+MLE MY GIGLAAVQI V RL+V Sbjct: 5 MTTKPIIILPDPLLREVSQPIERIDADLERLIDDMLETMYDAPGIGLAAVQIAVPRRLLV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+II S S Y+EGCLSIPDY A+V+R A +TV+ +D + + Sbjct: 65 IDVSKEGEDKQPLVFINPEIIGSSQARSTYEEGCLSIPDYYAEVERPAAVTVKSLDRHGK 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Q+I ADGLLATCLQHE+DHLNG LFIDH+SRLKR+M+ Sbjct: 125 EQVIEADGLLATCLQHEIDHLNGTLFIDHISRLKREMV 162 >gi|114766694|ref|ZP_01445633.1| peptide deformylase [Pelagibaca bermudensis HTCC2601] gi|114541084|gb|EAU44139.1| peptide deformylase [Roseovarius sp. HTCC2601] Length = 173 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 82/170 (48%), Positives = 114/170 (67%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++ P+ ++ + L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRPILIHPDPRLKKACAPVPDLSDKLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60 Query: 62 DLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D D P+V NP+++ SD+ +VY+EGCLSIPD A+V+R + V ++D + Sbjct: 61 DCAKADDGEAPRPLVMFNPQVVASSDERNVYEEGCLSIPDQYAEVERPKVVDVEWLDRDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 TLQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRDR 170 >gi|323142780|ref|ZP_08077493.1| peptide deformylase [Succinatimonas hippei YIT 12066] gi|322417425|gb|EFY08046.1| peptide deformylase [Succinatimonas hippei YIT 12066] Length = 175 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 3/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V FPD LR++ P+ + ++ + L D+M E MY +GIGLAA QIG+ R+VV Sbjct: 1 MAIREIVTFPDERLRQICAPVTEFDAALKELTDDMFETMYDDEGIGLAAPQIGIEKRIVV 60 Query: 61 IDLQDHAHR--KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+ + + KN +V INPKI + +EGCLS+P+YRA++KR IT+ D N Sbjct: 61 IDIPEEDGKQGKNKLVLINPKITAKEGE-VASEEGCLSVPEYRAEIKRYEKITLECQDLN 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q QI ADGLLA C+QHELDHL+G LFID+LSRLKRD + K KL + + Sbjct: 120 GQKQIYEADGLLAICMQHELDHLDGKLFIDYLSRLKRDRLLTKYRKLKKEQ 170 >gi|154247233|ref|YP_001418191.1| peptide deformylase [Xanthobacter autotrophicus Py2] gi|154161318|gb|ABS68534.1| peptide deformylase [Xanthobacter autotrophicus Py2] Length = 172 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 86/170 (50%), Positives = 123/170 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I P+P LR +S +EKI+S++ L+++M + MY GIGLAA+Q+GV R+V Sbjct: 1 MATRPILIIPEPKLRTLSASVEKIDSEVKKLVEDMFDTMYDAPGIGLAAIQVGVQRRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+ INP+II S++ SVY EGCLSIP+Y +V+R A +TVR+ D Q Sbjct: 61 IDVAREGEAKKPIALINPEIIAASEETSVYAEGCLSIPEYYEEVERPARVTVRFQDIEGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + ADGL ATC+QHE+DHLNG+LFIDH+S+LKRD + KK +KL + +D Sbjct: 121 VREVAADGLFATCVQHEIDHLNGVLFIDHISKLKRDRVIKKFTKLARHKD 170 >gi|293611136|ref|ZP_06693434.1| peptide deformylase [Acinetobacter sp. SH024] gi|292826387|gb|EFF84754.1| peptide deformylase [Acinetobacter sp. SH024] gi|325124152|gb|ADY83675.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2] Length = 176 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 113/170 (66%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +MLE MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + +PMVFINPKI ++D Y+EGCLS+P V+R + + + ++ Q Sbjct: 61 IDLSES--KDDPMVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFELEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|114770091|ref|ZP_01447629.1| peptide deformylase [alpha proteobacterium HTCC2255] gi|114548928|gb|EAU51811.1| peptide deformylase [alpha proteobacterium HTCC2255] Length = 172 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 111/168 (66%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+++ PDP L+++ P++ ++++ L D+M+E MY G+GLAA Q+ R+ V Sbjct: 1 MSLLPILLHPDPRLKKLCVPVQSVDAETRKLADSMIETMYDAPGVGLAAPQVASDARIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D P+V INP+II+ S++ + Y EGCLS+PD DV+R + + ++D + + Sbjct: 61 MDCTDSESDNQPLVLINPEIISVSEELNTYSEGCLSLPDLFEDVERPKQVRMSFLDIDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 DGL ATC QHELDHLNG+LFIDHLSR+KR M+TKKM KL + Sbjct: 121 QHNELFDGLWATCAQHELDHLNGVLFIDHLSRMKRSMMTKKMVKLKKE 168 >gi|294012439|ref|YP_003545899.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S] gi|292675769|dbj|BAI97287.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S] Length = 176 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 92/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR +S P+E I+ D+ LID+M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAILPILEAPDPRLRTISSPVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDLQDHA-------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 IDLQ+ K PMVFINP+I+ S+D SVY EGCLS+PD A+V+R A I Sbjct: 61 IDLQEPESDEEGAPPVKKPMVFINPEILDGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +MD + + +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K + Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174 >gi|159042735|ref|YP_001531529.1| peptide deformylase [Dinoroseobacter shibae DFL 12] gi|157910495|gb|ABV91928.1| peptide deformylase [Dinoroseobacter shibae DFL 12] Length = 187 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 106/169 (62%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP L++ P+ +I +I L D+ML MY GIGLA Q+ + R++ Sbjct: 14 MTIRPILIHPDPRLKKTVDPVAEITDEIRQLADDMLATMYDAPGIGLAGPQVAAMTRIIT 73 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +PMV INP+I+ S++ + Y+EGCLSIP+ ADV+R A + VR+ Sbjct: 74 MDCAPKDGEPDPMVLINPEIVWSSEEMNTYEEGCLSIPEMYADVERPAEVEVRWTTLEGG 133 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 GL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + R Sbjct: 134 DASARWGGLHATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRER 182 >gi|260461121|ref|ZP_05809370.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] gi|259033155|gb|EEW34417.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] Length = 176 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 121/158 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+VS+P+E++++ + L D+ML MY GIGLAA+QIG R++V Sbjct: 1 MPIKPLIILPDPILRQVSKPVERVDAPLRGLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL P VFINP+I+ +D SVY+EGCLSIPDY A+V+R A + V+Y+D + + Sbjct: 61 IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMV 158 >gi|237746966|ref|ZP_04577446.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS] gi|229378317|gb|EEO28408.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS] Length = 183 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 114/169 (67%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ +PDP L + SRP+ +S++ L++NM + MY G+GLAA Q+ ++VV Sbjct: 1 MARLPILRYPDPRLLKPSRPVTSFDSELKTLVENMAQTMYEAPGVGLAAPQVNAHRQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + VFINP+II S++ ++++EGCLS+P +++R A +TVR D + + Sbjct: 61 IDVSEKRNELH--VFINPQIIKASEEKTLFEEGCLSLPGIYDEIERPARVTVRAQDVDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K + + Sbjct: 119 AFEMEAEGLLAVCVQHEIDHLKGRVFVDYLSPMKRNRIKKKLLKEEREQ 167 >gi|163744872|ref|ZP_02152232.1| peptide deformylase [Oceanibulbus indolifex HEL-45] gi|161381690|gb|EDQ06099.1| peptide deformylase [Oceanibulbus indolifex HEL-45] Length = 172 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P+++ PDP L++ + P+ ++ ++ L D+ML MY GIGLAA Q+GVL R++V+ Sbjct: 1 MKRPILLHPDPRLKKAAAPVADLSDELRVLGDDMLATMYDAPGIGLAAPQVGVLSRVIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P++ NP+I+ SDD + Y+EGCLSIP+ ADV R A + VR++D + + Sbjct: 61 DCVKEEGEAPRPLLMFNPEIVASSDDLNTYEEGCLSIPEQFADVTRPAEVEVRWLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + Sbjct: 121 EQREGFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRE 168 >gi|288959246|ref|YP_003449587.1| peptide deformylase [Azospirillum sp. B510] gi|288911554|dbj|BAI73043.1| peptide deformylase [Azospirillum sp. B510] Length = 170 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 78/167 (46%), Positives = 123/167 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P+++ P PIL+R ++P+ ++++ ++ L+D+M+E MY GIGLAA Q+GVL R++V Sbjct: 1 MARLPILVAPHPILKRKAQPVAEVDARVVKLMDDMVETMYDAAGIGLAAPQVGVLDRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + NP+ NP+II S+D +V +EGCLS+P+ A+V R + VRY+D Q Sbjct: 61 VDVHEKGEPPNPIRLANPEIIWSSEDKAVCEEGCLSVPEQYAEVTRPQRVRVRYLDERNQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q I A+G+LATCLQHE+DHLNG+LF+D+LS LKR+++ KK+ K+ + Sbjct: 121 PQEIEAEGMLATCLQHEIDHLNGVLFVDYLSMLKRNILLKKVQKMQK 167 >gi|262374668|ref|ZP_06067941.1| peptide deformylase [Acinetobacter junii SH205] gi|262310458|gb|EEY91549.1| peptide deformylase [Acinetobacter junii SH205] Length = 176 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ DI L +MLE MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDDIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPK+ + + Y+EGCLS+P V+R + + + ++ + Q Sbjct: 61 MDLSE--EKNQPMVFINPKVTPLTQETQPYEEGCLSVPQIYDKVERPSRVKIEAINLDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|163795436|ref|ZP_02189403.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199] gi|159179422|gb|EDP63953.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199] Length = 175 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 108/156 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP+L+ R ++ ++ ++ LID+M + MY G+GLAA Q+GV R++V Sbjct: 1 MAILPIIWAPDPVLKTKCRSVDVVDDEVRRLIDDMFQTMYFAPGVGLAAPQVGVTKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P+ +NP+I+ SD +Y+EGCLS+P+ ADV+R++ + VRY+D + Sbjct: 61 VDVAGKDEKPQPIALVNPEIVWRSDATQIYEEGCLSLPELYADVERASHVKVRYLDRDGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 Q I +GLLA CLQHE+DH++G+LF+DH+S LKR+ Sbjct: 121 EQKIEGEGLLAVCLQHEIDHIDGVLFVDHISALKRN 156 >gi|120552986|ref|YP_957337.1| peptide deformylase [Marinobacter aquaeolei VT8] gi|120322835|gb|ABM17150.1| peptide deformylase [Marinobacter aquaeolei VT8] Length = 167 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 2/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP LR +++P+E++ DI LID+M E MY GIGLAA Q+ V +++V+ Sbjct: 1 MIREILEYPDPRLRTIAKPVEEVTDDIRTLIDDMFETMYDARGIGLAATQVDVHKQIIVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + + P VFINPK+ + QEGCLS+P + DVKR + D + + Sbjct: 61 DLSE--DKTEPRVFINPKVEVLDGELEAMQEGCLSVPGFYEDVKRIEHCRITAKDRDGKE 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ A+GLLA C+QHE+DHLNG LF+D+LS+LKR+ I KK+ KL + Sbjct: 119 FVLEAEGLLAVCIQHEMDHLNGKLFVDYLSQLKRNRIRKKLEKLHKQ 165 >gi|260554281|ref|ZP_05826531.1| peptide deformylase 1 [Acinetobacter sp. RUH2624] gi|260404590|gb|EEW98110.1| peptide deformylase 1 [Acinetobacter sp. RUH2624] Length = 176 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +M E MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPKI +++ Y+EGCLS+P V R + + + ++ Q Sbjct: 61 MDLSES--KDEPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHL G LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLKGKLFVDYLSPLKRQRAREKVEKIVRQRE 168 >gi|307294614|ref|ZP_07574456.1| peptide deformylase [Sphingobium chlorophenolicum L-1] gi|306879088|gb|EFN10306.1| peptide deformylase [Sphingobium chlorophenolicum L-1] Length = 176 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 93/174 (53%), Positives = 122/174 (70%), Gaps = 7/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR +S P+E I++D+ LID+MLE MY GIGLAA+Q+GV R++V Sbjct: 1 MAILPILEAPDPRLRTISSPVEAIDADLQRLIDDMLETMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDL-------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 IDL +D K PMVFINP+I+ S+D SVY EGCLS+PD A+V+R A I Sbjct: 61 IDLQEPESDEEDAPPVKKPMVFINPEILEGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +MD + + +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K + Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174 >gi|114568993|ref|YP_755673.1| peptide deformylase [Maricaulis maris MCS10] gi|122316781|sp|Q0ASK2|DEF_MARMM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114339455|gb|ABI64735.1| peptide deformylase [Maricaulis maris MCS10] Length = 174 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 113/170 (66%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDPIL+ VS+P+++++ D+ L+D+ML+ MY+ DGIGLAA+Q+GV R++V Sbjct: 1 MAIREILTVPDPILKEVSQPVDQVDDDLRELMDDMLQTMYAADGIGLAAIQVGVPKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P F+NP + SD Y+EGCLS+P +++R I ++Y+D + Sbjct: 61 MDLAGSDEEAKPRYFVNPVLSDPSDTLKPYEEGCLSVPTVYDEIERPDRIHIQYLDYDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+G+ A C+QHE+DHL G+LFID+LSRLKR +K+ K+ + +D Sbjct: 121 ECEEIAEGMFAVCIQHEMDHLEGVLFIDYLSRLKRQRAVQKVKKVEKSKD 170 >gi|226952176|ref|ZP_03822640.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase) [Acinetobacter sp. ATCC 27244] gi|294648885|ref|ZP_06726341.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] gi|226837014|gb|EEH69397.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase) [Acinetobacter sp. ATCC 27244] gi|292825276|gb|EFF84023.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] Length = 176 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +MLE MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPK+ +++ Y+EGCLS+P V+R + + + ++ Q Sbjct: 61 MDLSE--EKNQPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|229587596|ref|YP_002869715.1| peptide deformylase [Pseudomonas fluorescens SBW25] gi|229359462|emb|CAY46303.1| peptide deformylase [Pseudomonas fluorescens SBW25] Length = 168 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ + L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P V+INP+ +D+ YQEGCLS+P++ +V+R + ++ +D + + Sbjct: 61 MDLSE--DRSEPRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKKHRQQ 167 >gi|148556945|ref|YP_001264527.1| peptide deformylase [Sphingomonas wittichii RW1] gi|166198523|sp|A5VDM3|DEF_SPHWW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148502135|gb|ABQ70389.1| peptide deformylase [Sphingomonas wittichii RW1] Length = 177 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 5/174 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP LR +S P+E ++ ++ LI +M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAIRLILEAPDPRLRTISTPVEAVDDELRALIADMFETMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDLQDHA-----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 IDLQ+ ++P VFINP++ S++ SVY EGCLS+P+ A+V+R A I R++ Sbjct: 61 IDLQEEEDAEGKPIRHPRVFINPELFDPSEEQSVYNEGCLSVPEQYAEVERPAVIHARWL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D +GLLATCLQHE+DHL GILFIDHLSRLKR+M+ KK+ K + R Sbjct: 121 DEQGAKHEERLEGLLATCLQHEMDHLEGILFIDHLSRLKREMVMKKLEKARRAR 174 >gi|257456003|ref|ZP_05621212.1| peptide deformylase [Enhydrobacter aerosaccus SK60] gi|257446592|gb|EEV21626.1| peptide deformylase [Enhydrobacter aerosaccus SK60] Length = 176 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 107/170 (62%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP LR +++P+ + ++ LID+M E MY+ GIGLAA Q+ +LVV Sbjct: 1 MTLRTILNYPDPRLRTLAKPVTHFDDELKTLIDDMFETMYAAKGIGLAATQVDEHIQLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP + +D+ Y+EGCLS+P+Y V R + + +D Sbjct: 61 MDLSEDGS--QPRVFINPIVTPLADELYSYEEGCLSVPEYYDKVDRPKHVKIEALDAQGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A GLLA C+QHE+DHLNG +F+D+LS+LK+D K+ K+V+ R+ Sbjct: 119 PFVEEAQGLLAVCIQHEIDHLNGKIFVDYLSKLKQDRARDKVRKVVKQRE 168 >gi|254483306|ref|ZP_05096537.1| peptide deformylase [marine gamma proteobacterium HTCC2148] gi|214036401|gb|EEB77077.1| peptide deformylase [marine gamma proteobacterium HTCC2148] Length = 168 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V+ P+ + L+D+MLE MY+ GIGLAA Q+ V R++V Sbjct: 1 MAVLEILEFPDPRLRTVAAPVNSVTDKHRQLLDDMLETMYAAPGIGLAATQVNVHERILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + +P+VFINP++ + Y EGCLS+P Y V R I V+ + + + Sbjct: 61 IDLSEK--QNDPLVFINPEVEILDKELGEYDEGCLSVPGYYETVNRPQRIAVKALGRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +GLLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K + R Sbjct: 119 PFSSEIEGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEKDQRRR 167 >gi|217977312|ref|YP_002361459.1| peptide deformylase [Methylocella silvestris BL2] gi|254767594|sp|B8ENG6|DEF_METSB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|217502688|gb|ACK50097.1| peptide deformylase [Methylocella silvestris BL2] Length = 196 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 83/171 (48%), Positives = 120/171 (70%), Gaps = 3/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PD LR V+RP+ ++S++ L+D+MLE MY GIGLAA QI V R++V Sbjct: 1 MPLRPIIILPDKRLRLVARPVASVDSEVRALMDDMLETMYEAPGIGLAATQIAVDRRVIV 60 Query: 61 IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +D+ +D + + +P+ NP+I+ S++ S Y+EGCLSIP++ +V R + V Y+D Sbjct: 61 LDVAKRRDDSAKADPICLANPEILWASEELSSYEEGCLSIPEFYEEVFRPEKVRVGYLDR 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + + I ADGLLATCLQHE+DHLNG+LFIDH+SRLKR I KK K +L Sbjct: 121 DGRRREIEADGLLATCLQHEIDHLNGVLFIDHISRLKRARIIKKFEKAAKL 171 >gi|114321775|ref|YP_743458.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1] gi|122310781|sp|Q0A5B9|DEF_ALHEH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114228169|gb|ABI57968.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1] Length = 178 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 110/168 (65%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++++PDP LR V+ P+ +++ DI L D+MLE MY GIGLAA Q+GV R+VV Sbjct: 1 MAILDILVYPDPRLREVAAPVAQVDDDIRRLADDMLETMYDAQGIGLAATQVGVNQRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P+V INP+I+ + QEGCLSIP + DV+R+ I R +D + Sbjct: 61 MDLAE-EGARQPLVLINPEILDREGA-ATGQEGCLSIPGFYEDVERAERIRFRALDREGR 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GL+A C+QHE+DHL+G LF+D+LS LKR I +K+ KLV+ Sbjct: 119 PWEQEAEGLMAVCVQHEIDHLDGKLFVDYLSELKRKRIRRKLEKLVRQ 166 >gi|85705033|ref|ZP_01036133.1| peptide deformylase [Roseovarius sp. 217] gi|85670355|gb|EAQ25216.1| peptide deformylase [Roseovarius sp. 217] Length = 172 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 80/168 (47%), Positives = 111/168 (66%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP LR+V P+ ++ + L +M E MY GIGLAA Q+GV+ RL+V+ Sbjct: 1 MKRSILIHPDPRLRKVCTPVTDVSDALRKLSQDMFETMYDAPGIGLAAPQVGVMDRLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +D P+ +NP+I FSD SVY+EGCLSIPD ADV R A + VR+MD + Sbjct: 61 DCVKDEGATPRPIAMLNPEITAFSDQTSVYEEGCLSIPDQFADVTRPAEVEVRWMDLDGV 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL + Sbjct: 121 EHKEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKLKRE 168 >gi|317050727|ref|YP_004111843.1| peptide deformylase [Desulfurispirillum indicum S5] gi|316945811|gb|ADU65287.1| peptide deformylase [Desulfurispirillum indicum S5] Length = 171 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ +PDP+L+++S+P+ + +S + L+ +M + MY+ +G+GLAA QIG+L R+ V+ Sbjct: 1 MIHPILTYPDPLLKKISQPVTQFDSALQQLVSDMFDTMYNANGVGLAAPQIGILRRICVL 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P+V INP+I++ + + ++EGCLS+P Y ++KR I V++ D Q Sbjct: 61 DPASGKEEEAQPLVLINPQILS-GEGLTTFEEGCLSVPGYYGEIKRYERIQVQFNDLQGQ 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q DG A QHE+DHLNG LFI+HL +RD+I +K+ K ++ Sbjct: 120 EQTAILDGFTAIIAQHEMDHLNGKLFIEHLGSSERDLIRRKIRKAMKE 167 >gi|254487738|ref|ZP_05100943.1| peptide deformylase [Roseobacter sp. GAI101] gi|214044607|gb|EEB85245.1| peptide deformylase [Roseobacter sp. GAI101] Length = 174 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 111/168 (66%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ +++ PDP L+++ P+ + ++ L D+ML MY GIGLAA QIGVL RL+V+ Sbjct: 3 MKRNIILHPDPRLKKLCAPVTDMTDELRALADDMLATMYDAPGIGLAAPQIGVLNRLIVM 62 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ + P++ NP++I SD S Y+EGCLSIPD ADV R A + VR++D + Sbjct: 63 DCVKEEGEKPRPLIMFNPEVIASSDIESTYEEGCLSIPDQFADVTRPAEVDVRWIDRDGN 122 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 L ATC+QHE+DHL+G LFID+L L+R MIT+KM+KL + Sbjct: 123 EHTETFSKLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMTKLKRE 170 >gi|163733890|ref|ZP_02141332.1| peptide deformylase [Roseobacter litoralis Och 149] gi|161393001|gb|EDQ17328.1| peptide deformylase [Roseobacter litoralis Och 149] Length = 175 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 114/168 (67%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ +++ PDP L++++ P+ I+ ++ L D+MLE MY GIGLAA Q+G+L R+ V+ Sbjct: 4 MKRSIILHPDPRLKKIAAPVADISDELRQLGDDMLETMYDAPGIGLAAPQVGILQRVFVM 63 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP++I SD+ +VY+EGCLSIP+ ADV R A + +R+MD + Sbjct: 64 DCVKEPGETPRPIVMFNPEVIATSDETNVYEEGCLSIPEQFADVTRPADVELRWMDRDGA 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q GL ATC QHE+DHL+G LFID+L LKR MIT+KM KL + Sbjct: 124 EQTEVFTGLWATCAQHEIDHLDGKLFIDYLRPLKRQMITRKMVKLKRE 171 >gi|256823831|ref|YP_003147794.1| peptide deformylase [Kangiella koreensis DSM 16069] gi|256797370|gb|ACV28026.1| peptide deformylase [Kangiella koreensis DSM 16069] Length = 175 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR ++P+ ++ ID+M E MY+ GIGLAA Q+ + + V Sbjct: 1 MAILEILEFPDPRLRTKAKPVTDFGDELQQQIDSMFETMYAAPGIGLAATQVNIHKQFFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + P+VFINP+I+ +EGCLS P A V+R+ I V+ +D + + Sbjct: 61 IDVSD--DKSEPLVFINPQIVEKRG-VEEMEEGCLSFPGVYAKVQRANEIVVKALDRHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + LLA C+QHE DH+ G LF+D+LS LKR+ I K + K Sbjct: 118 PFEMDTGELLAVCIQHENDHIEGKLFVDYLSPLKRNRIRKMLEK 161 >gi|83642943|ref|YP_431378.1| peptide deformylase [Hahella chejuensis KCTC 2396] gi|123767556|sp|Q2SQX1|DEF_HAHCH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|83630986|gb|ABC26953.1| peptide deformylase [Hahella chejuensis KCTC 2396] Length = 168 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR V++P++ ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MSKLQILEFPDPRLRTVAKPVQTFDAALGQLIDDMFETMYEAPGIGLAATQVDVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + PMVFINP I D QEGCLS+P + V R + +R D N + Sbjct: 61 IDVSE--DKSEPMVFINPDIEVLDGDPEEMQEGCLSVPGFYESVTRIPHVKIRAQDRNGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A GLLA CLQHE+DHLNG L++D+LS +KR I KK+ K ++R Sbjct: 119 SYEMEARGLLAVCLQHEVDHLNGKLYVDYLSNVKRTRIRKKLEKQHKMR 167 >gi|39933698|ref|NP_945974.1| peptide deformylase [Rhodopseudomonas palustris CGA009] gi|192289055|ref|YP_001989660.1| peptide deformylase [Rhodopseudomonas palustris TIE-1] gi|81698398|sp|Q6NC51|DEF_RHOPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229487564|sp|B3QCH1|DEF_RHOPT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|39647544|emb|CAE26065.1| putative N-formylmethionylaminoacyl-tRNA deformylase [Rhodopseudomonas palustris CGA009] gi|192282804|gb|ACE99184.1| peptide deformylase [Rhodopseudomonas palustris TIE-1] Length = 175 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ ++I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVTEVTTEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ ++ + +P FINP+I+ S + +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDIVRKEGDGKSDPRAFINPEIVGASSEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K K + Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169 >gi|121596335|ref|YP_988231.1| peptide deformylase [Acidovorax sp. JS42] gi|222112559|ref|YP_002554823.1| peptide deformylase [Acidovorax ebreus TPSY] gi|120608415|gb|ABM44155.1| peptide deformylase [Acidovorax sp. JS42] gi|221732003|gb|ACM34823.1| peptide deformylase [Acidovorax ebreus TPSY] Length = 170 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 108/170 (63%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ ++ + ++D+M MY GIGLAA Q+ V R+VV Sbjct: 1 MAILPILCYPDPRLHKVAQPVTAVDERVRAIVDDMFATMYDAHGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I S + V EGCLS+P V+RS + VR +D + Q Sbjct: 61 IDVSE--ERDTPLVLINPEITWASAEKQVGDEGCLSVPGIYDGVERSTAVHVRALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++I A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K + + Sbjct: 119 PRVIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQAE 168 >gi|53803080|ref|YP_115237.1| polypeptide deformylase [Methylococcus capsulatus str. Bath] gi|53756841|gb|AAU91132.1| polypeptide deformylase [Methylococcus capsulatus str. Bath] Length = 178 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+ + P+E + + +D+M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MTILSILEFPDERLRKKAAPVEVFDDTLRRTVDDMFETMYAAPGVGLAATQVNVHKRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+ INP+++ + +EGCLS+P V R+ + VR D N + Sbjct: 61 IDVSE--EKDAPLCLINPELLEKQGN-GEMEEGCLSVPGIFEKVPRAESVRVRAQDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A+GLLA C+QHE+DHL G LF+DHLS LKR M KK+ K +LR+ Sbjct: 118 FFEMSAEGLLAVCIQHEMDHLEGKLFLDHLSTLKRQMARKKLQKERRLRE 167 >gi|21233177|ref|NP_639094.1| peptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770117|ref|YP_244879.1| peptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|188993325|ref|YP_001905335.1| peptide deformylase [Xanthomonas campestris pv. campestris str. B100] gi|39931165|sp|Q8P4F9|DEF2_XANCP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|21115026|gb|AAM43006.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575449|gb|AAY50859.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|167735085|emb|CAP53297.1| Peptide deformylase [Xanthomonas campestris pv. campestris] Length = 170 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 82/170 (48%), Positives = 113/170 (66%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E ++ L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + P VFINP+I+T + VYQEGCLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDVSE--EKDAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q + DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++KL + Sbjct: 118 QGQPQELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKLRK 167 >gi|27383220|ref|NP_774749.1| peptide deformylase [Bradyrhizobium japonicum USDA 110] gi|39930882|sp|Q89BN9|DEF_BRAJA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|27356394|dbj|BAC53374.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110] Length = 174 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 82/174 (47%), Positives = 116/174 (66%), Gaps = 4/174 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VS+PIEK+ ++I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKQLRLVSKPIEKVTTEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60 Query: 61 IDLQDHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL + P VFINP++I S++ SVY+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLAKRDENGETKPEPRVFINPEVIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK K + + Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEKAAKRAE 174 >gi|182677492|ref|YP_001831638.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633375|gb|ACB94149.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] Length = 193 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 117/176 (66%), Gaps = 9/176 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP+LRRV P+ ++S+I L+D+MLE MY GIGLAA QI V+ R++V Sbjct: 1 MALRSIITIPDPLLRRVCDPVADVDSEIRRLMDDMLETMYDAPGIGLAASQIAVMKRVIV 60 Query: 61 IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +D+ + P+ NP+I+ S++ S Y+EGCLSIPDY +V R A + Sbjct: 61 MDVAKRRKGEDGAEADVAPQPLALANPEILWASEELSTYEEGCLSIPDYYEEVVRPARVR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 V Y+D Q Q + ADG+LATC+QHE+DHLNG+LFIDH+SRLKR+ I KK SK + Sbjct: 121 VGYLDRQGQRQELEADGILATCVQHEIDHLNGVLFIDHISRLKRERIVKKFSKAAK 176 >gi|332531650|ref|ZP_08407547.1| peptide deformylase [Hylemonella gracilis ATCC 19624] gi|332039013|gb|EGI75442.1| peptide deformylase [Hylemonella gracilis ATCC 19624] Length = 174 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L V++P++ +++ I LI +M E MY +GIGLAA QI V RLVV Sbjct: 1 MALLPILTYPDPRLHTVAQPVQAVDARIKQLIADMFETMYDMNGIGLAATQINVHERLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P VFINP+I+ S + + +EGCLS+P V+R + VR +D Q Sbjct: 61 IDVSE--GRDQPQVFINPEIVWASPETKINEEGCLSVPGIYDGVERHERVHVRALDGEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +++ +GLL+ C+QHE+DHL G +F+++LS LKR+ I KM KL + Sbjct: 119 SRVVECEGLLSICIQHEMDHLMGKVFVEYLSPLKRNRIKTKMQKLQRE 166 >gi|304392301|ref|ZP_07374242.1| peptide deformylase [Ahrensia sp. R2A130] gi|303295405|gb|EFL89764.1| peptide deformylase [Ahrensia sp. R2A130] Length = 193 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 123/186 (66%), Gaps = 18/186 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PDPILR S+ +E+++ ++ +D+M + MY GIGLAAVQ+G R+ V Sbjct: 1 MALLPIVHLPDPILRVRSQEVERVDDELRKFLDDMADTMYDAPGIGLAAVQVGEPRRIFV 60 Query: 61 IDLQDH------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 +D + +++P+ INPKI+TFSD+ S+Y+EGCLSIPDY A Sbjct: 61 VDCSERAEAEEEAEDDAPIRAEAVEEKRDPIFLINPKIVTFSDEPSMYEEGCLSIPDYYA 120 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +V+R A + ++D + + Q + ADGLL+TC+QHE+DHL+G LFIDH+S+LK++M+ KK Sbjct: 121 EVERPATCRIEFLDRDGKEQSLEADGLLSTCIQHEMDHLDGTLFIDHISKLKKNMVIKKF 180 Query: 163 SKLVQL 168 +K+ + Sbjct: 181 TKIAKQ 186 >gi|197103839|ref|YP_002129216.1| polypeptide deformylase [Phenylobacterium zucineum HLK1] gi|238690164|sp|B4RDT8|DEF_PHEZH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|196477259|gb|ACG76787.1| polypeptide deformylase [Phenylobacterium zucineum HLK1] Length = 169 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 75/156 (48%), Positives = 113/156 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +++ P P L++VS+P+EK++ ++ L+D+MLE MY+ GIGLAA+QIGV R++V Sbjct: 1 MAIREILVVPHPALKQVSQPVEKVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL K P F+NP+I+ SDD + Y+EGCLS+P+Y +V+R A + +RY++ + Sbjct: 61 MDLAREGEEKQPRYFVNPEILWASDDTAPYEEGCLSVPEYYDEVERPARVKLRYLNYQGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 A+GL A C+QHE+DHL G+LFIDHLSRLKR+ Sbjct: 121 QVEEDAEGLFAVCIQHEMDHLEGVLFIDHLSRLKRE 156 >gi|108761299|ref|YP_629687.1| peptide deformylase [Myxococcus xanthus DK 1622] gi|108465179|gb|ABF90364.1| peptide deformylase [Myxococcus xanthus DK 1622] Length = 177 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 113/169 (66%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++I+PDP+L++ ++P+ K++ L+ +M E MYS +G+GLAA QIGVL R++V+ Sbjct: 1 MVREILIWPDPVLKQKAKPVAKVDDSTRTLVKDMFETMYSAEGVGLAAPQIGVLQRVIVL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D P+ INP+II D Y EGCLSIP ADV R+A +TV+++D + Q Sbjct: 61 DTTHSQPELKPVAMINPEIIAMEGDT-TYNEGCLSIPGEAADVDRAAVVTVKFLDPDGQE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + DGLL+ +QHE DHLNG +F+DH+S LKR+ I K+M +L R+ Sbjct: 120 QTLRCDGLLSIAVQHETDHLNGTVFVDHISSLKREFIRKRMKRLKTSRE 168 >gi|254784305|ref|YP_003071733.1| peptide deformylase [Teredinibacter turnerae T7901] gi|259645186|sp|C5BKQ0|DEF_TERTT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|237684580|gb|ACR11844.1| peptide deformylase [Teredinibacter turnerae T7901] Length = 168 Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPD LR V++P+E+++ + +ID+M E MY GIGLAA Q+ V +++V Sbjct: 1 MALLPILEFPDARLRTVAKPVEQVDERVRAIIDDMFETMYDAPGIGLAATQVNVHEQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+VFINP+I + Y+EGCLS+P + +V R + V ++ + + Sbjct: 61 IDISE--NHDEPLVFINPRIDVLDETLFDYEEGCLSVPGFYEEVTRPRHVRVTALNRDGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++ +GLLA C+QHE+DHL G LF+D++S +KR I KK+ K + R Sbjct: 119 EFVLEPEGLLAVCIQHEIDHLKGKLFVDYVSNIKRQRIRKKLEKQHKER 167 >gi|260574964|ref|ZP_05842966.1| peptide deformylase [Rhodobacter sp. SW2] gi|259022969|gb|EEW26263.1| peptide deformylase [Rhodobacter sp. SW2] Length = 181 Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 75/167 (44%), Positives = 111/167 (66%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L+++ P+ KI +I L ++MLE MY GIGLAA Q+GV +L+V+ Sbjct: 1 MKRTILIHPDPRLKKICEPVPKITVEIGRLAEDMLETMYDAPGIGLAAPQLGVTKQLIVM 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +D A PM NP + S+D S Y+EGCLS+P+ A+++R + + VR+ + Sbjct: 61 DCVKDPALTARPMAMFNPVVTWASEDLSTYEEGCLSLPNQYAEIERPSEVRVRWTGLDGV 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + GL ATC+QHE+DHL+G LFID+L L+R MIT+KM KL + Sbjct: 121 EQEEHFTGLWATCVQHEIDHLSGKLFIDYLRPLRRQMITRKMEKLKR 167 >gi|323135726|ref|ZP_08070809.1| peptide deformylase [Methylocystis sp. ATCC 49242] gi|322398817|gb|EFY01336.1| peptide deformylase [Methylocystis sp. ATCC 49242] Length = 188 Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 87/170 (51%), Positives = 121/170 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR+VS P+E+I+++I L+D+MLE MY+ GIGLAA+Q+ V R+VV Sbjct: 1 MALLPIITLPDPRLRKVSEPVERIDAEIHRLLDDMLETMYAAPGIGLAAIQVAVAKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ ++P+ INP+II S++ S YQEGCLS+PDY DVKR A + VR++D + Q Sbjct: 61 VDIGKTEDERSPLFLINPEIIWASEELSSYQEGCLSVPDYFDDVKRPAMVKVRHLDRHGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q A GLLAT +QHEL+HL G LFID+LSRLKR+ + KK SK + + Sbjct: 121 TQEFDAVGLLATVVQHELEHLEGGLFIDNLSRLKRERVVKKFSKAARFDE 170 >gi|92114984|ref|YP_574912.1| peptide deformylase [Chromohalobacter salexigens DSM 3043] gi|123387341|sp|Q1QTJ5|DEF_CHRSD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|91798074|gb|ABE60213.1| peptide deformylase [Chromohalobacter salexigens DSM 3043] Length = 170 Score = 219 bits (559), Expect = 9e-56, Method: Composition-based stats. Identities = 75/167 (44%), Positives = 107/167 (64%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPD LR + P+E ++ + L+D+MLE MY GIGLAA Q+ V R++V Sbjct: 1 MAKLTILEFPDERLRTKAAPVETVDDETRKLVDDMLETMYDAQGIGLAATQVDVHRRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R P V INP+ D+ QEGCLSIP+Y A+V R+ ++++ +D + Sbjct: 61 MDVSD--DRSQPRVLINPEYTPLGDEREPMQEGCLSIPEYYAEVPRALRVSLKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHE DHL G+LF+D+LS LKRD + KKM K + Sbjct: 119 PYELEADGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRVLKKMQKRHR 165 >gi|311109268|ref|YP_003982121.1| peptide deformylase 2 [Achromobacter xylosoxidans A8] gi|310763957|gb|ADP19406.1| peptide deformylase 2 [Achromobacter xylosoxidans A8] Length = 170 Score = 219 bits (559), Expect = 9e-56, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + ++P+ +++ I L+ +M E MY G+GLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ +V INP+I SDD+ +Y+EGCLS+P DV+R++ I + +D + + Sbjct: 61 IDVSEDSN--QLLVLINPEITWHSDDYKIYEEGCLSVPGVYDDVERASRIRCKALDVDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADGLLA C+QHELDHL G +F+++LS LK++ I ++ K + Sbjct: 119 PFEFEADGLLAVCVQHELDHLEGKVFVEYLSSLKQNRIKTRLKKAERE 166 >gi|75677243|ref|YP_319664.1| formylmethionine deformylase [Nitrobacter winogradskyi Nb-255] gi|74422113|gb|ABA06312.1| peptide deformylase [Nitrobacter winogradskyi Nb-255] Length = 187 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 80/171 (46%), Positives = 112/171 (65%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VSRPIE + +I L D+M E MY GIGLA +QI R+V Sbjct: 13 MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIVT 72 Query: 61 IDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL P VFINP+I++ S++ SVY+EGCLSIP+Y V+R + + +R+ D Sbjct: 73 MDLARRDEEGELTPRPRVFINPEILSASEELSVYEEGCLSIPEYYEAVERPSRVRIRFTD 132 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL ATC+QHE+DHLNG+LF+DHLS+LKRD + KK +K + Sbjct: 133 LDGKVHEEDAEGLFATCIQHEIDHLNGVLFVDHLSKLKRDRVMKKFTKAAK 183 >gi|317401262|gb|EFV81903.1| peptide deformylase 1 [Achromobacter xylosoxidans C54] Length = 170 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + ++P+ +++ I L+ +M E MY G+GLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +V INP+I SDD+ +Y+EGCLS+P +V+R++ I + +D + + Sbjct: 61 IDVSE--ESNQLLVLINPEITWRSDDYKIYEEGCLSVPGIYDEVERASRIRCKALDIDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADGLLA C+QHELDHL G +F+++LS LK++ I K+ K + Sbjct: 119 PFEFDADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKKAERE 166 >gi|254436643|ref|ZP_05050137.1| peptide deformylase [Octadecabacter antarcticus 307] gi|198252089|gb|EDY76403.1| peptide deformylase [Octadecabacter antarcticus 307] Length = 178 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 113/169 (66%), Gaps = 1/169 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +++ PDP L+ V+ P+ ++ + L D+MLE MY+ GIGLAA Q+G++ R++V Sbjct: 4 MTLRSILLHPDPRLKSVADPVATVDKTLHALADDMLETMYNAPGIGLAAPQLGIMQRMLV 63 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D +D PMV INP++I S D ++Y EGCLSIPD A+V+R A + V +M+ + Sbjct: 64 MDCIKDDMETPQPMVLINPRVIFASSDTNIYDEGCLSIPDQYAEVERPAVVKVEWMNLDG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + Q L ATC+QHE+DHLNG LFID+L L+R MIT+KM KL + Sbjct: 124 KTQQEEFSDLWATCVQHEIDHLNGKLFIDYLKPLRRQMITRKMQKLKRE 172 >gi|254473716|ref|ZP_05087111.1| peptide deformylase [Pseudovibrio sp. JE062] gi|211957102|gb|EEA92307.1| peptide deformylase [Pseudovibrio sp. JE062] Length = 175 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 88/174 (50%), Positives = 114/174 (65%), Gaps = 6/174 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+ LR PIE IN +I L D+ML+ MY GIGLAA QIGV+ R+ V Sbjct: 1 MTIREIKFVPEACLREKCAPIEDINDEIRTLADDMLQTMYDAPGIGLAASQIGVMKRMFV 60 Query: 61 IDL------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +D+ +D + K PMVFINP+I S++ + YQEGCLSIP DV+R A + V + Sbjct: 61 LDVAERESEEDDSVEKEPMVFINPEITWSSEEKNTYQEGCLSIPGIYEDVERPAEVRVSF 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ + Q I A GLLATC+QHELDHLNG+LFID+LSRLKRD I KKM K + Sbjct: 121 LNIEGEKQEIEAGGLLATCIQHELDHLNGVLFIDYLSRLKRDRIVKKMIKQQKQ 174 >gi|254456015|ref|ZP_05069444.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211] gi|207083017|gb|EDZ60443.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211] Length = 172 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 78/165 (47%), Positives = 117/165 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P+P+LR+VS+P++++ + L+D+MLE MY GIGLAA+Q+GV R++V Sbjct: 1 MTIKTIITEPNPLLRQVSKPVDQVGKEEQILMDDMLETMYDAPGIGLAAIQVGVPKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +K P F+NP I S Y+EGCLS+P+ A++ R + V Y+D + + Sbjct: 61 MDISKEEGKKEPRYFVNPVIKNKDSIKSTYEEGCLSVPNQFAEIDRPSKCEVEYLDYHGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SKL Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKL 165 >gi|330818688|ref|YP_004362393.1| Polypeptide deformylase [Burkholderia gladioli BSR3] gi|327371081|gb|AEA62437.1| Polypeptide deformylase [Burkholderia gladioli BSR3] Length = 167 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++ ++ I L+D+M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDVVDDRIRKLVDDMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + + VFINP+I+ SD VY+EGCLS+P +V+R + VR + + Q Sbjct: 61 IDTSE--DKNALQVFINPEIVWSSDGKQVYEEGCLSVPGVYDEVERPDHVRVRALGRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK++ I KM KL + Sbjct: 119 PFELECEGLLAVCIQHEMDHLMGRVFVQYLSPLKQNRIKSKMKKLER 165 >gi|284006131|emb|CBA71372.1| polypeptide deformylase [Arsenophonus nasoniae] Length = 171 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 115/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++K++++I ++++M E MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLNILHYPDERLRKIAEPVKKVDAEIQRIVNDMFETMYEEEGIGLAATQVNIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + +V INP I+ S + + +EGCLS+P+ RA V R+ ++ ++ +D N + Sbjct: 61 IDVSESRNER--LVLINPVILETSGETGI-EEGCLSVPEQRAFVPRAKWVKIKALDVNGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D LLA C+QHE+DHLNG LFID+LS LKR I +K+ KL +L+ Sbjct: 118 EFELETDDLLAICIQHEIDHLNGKLFIDYLSALKRQRIRQKIEKLERLK 166 >gi|154250717|ref|YP_001411541.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] gi|154154667|gb|ABS61884.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] Length = 173 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 79/155 (50%), Positives = 111/155 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L+ VS+P+E++++D+ L+D+MLE MY+ GIGLAA+QIGV +++V Sbjct: 1 MAIREIITAPDPRLKEVSKPVERVDADLRALMDDMLETMYAAPGIGLAAIQIGVPKQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P FINP+I+ S+D +VY+EGCLS+P++ DV+R A VRY+D + Sbjct: 61 MDLAREGEEPQPRYFINPEILWTSEDVAVYEEGCLSVPEFYEDVERPARCRVRYLDYQGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + D LLATCLQHE+DHL GILFIDHLSR KR Sbjct: 121 IREEECDDLLATCLQHEMDHLKGILFIDHLSRTKR 155 >gi|315122858|ref|YP_004063347.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496260|gb|ADR52859.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 165 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 117/167 (70%), Positives = 146/167 (87%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KK L+ FPDP+LRRVSR +E I+SDI++LI++M EVMYS+DGIGLAAVQIG+LYR+VV Sbjct: 1 MKKKSLIFFPDPVLRRVSRSVETIDSDIIHLIEDMFEVMYSSDGIGLAAVQIGILYRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + K+P+VFINP I++ S+D SV EGCLSIP++RADVKR++F+TV+Y+D NAQ Sbjct: 61 IDL----NTKSPLVFINPTIVSSSNDCSVRAEGCLSIPNHRADVKRASFVTVKYLDSNAQ 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 QIIYADGLLATCLQHE+DHLNGILFIDH+SRLKRDMI K+ KL++ Sbjct: 117 PQIIYADGLLATCLQHEIDHLNGILFIDHISRLKRDMIINKILKLIR 163 >gi|221069823|ref|ZP_03545928.1| peptide deformylase [Comamonas testosteroni KF-1] gi|220714846|gb|EED70214.1| peptide deformylase [Comamonas testosteroni KF-1] Length = 170 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ +++ I L+ +MLE MY GIGLAA QI V R++V Sbjct: 1 MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PM INP+I+ SD+ + +EGCLS+P V+RS + V+ +D N Sbjct: 61 IDVSE--ERNEPMALINPEILWASDETQLGEEGCLSVPGIYDGVERSIAVKVKALDENGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K + Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166 >gi|289664808|ref|ZP_06486389.1| peptide deformylase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667878|ref|ZP_06488953.1| peptide deformylase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 170 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P++ + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAELTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + +YQEGCLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDVSD--EKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQPQELHTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|126668176|ref|ZP_01739137.1| peptide deformylase [Marinobacter sp. ELB17] gi|126627325|gb|EAZ97961.1| peptide deformylase [Marinobacter sp. ELB17] Length = 167 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PDP LR +++P+ + +I LID+M E MY GIGLAA Q+ V ++VV+ Sbjct: 1 MILNILEYPDPRLRTLAKPVTTVTDEIRTLIDDMFETMYDAAGIGLAASQVNVHQQIVVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + P VFINPKI D QEGCLS+P + +V+R ++ +D N + Sbjct: 61 DLSEDNSE--PKVFINPKIGILDGDLEAMQEGCLSVPGFYEEVERIEHCLIKALDRNGEA 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A GLLA C+QHE+DHLNG LF+D+LS LKR I KK+ KL + Sbjct: 119 FEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLQK 164 >gi|149201578|ref|ZP_01878552.1| peptide deformylase [Roseovarius sp. TM1035] gi|149144626|gb|EDM32655.1| peptide deformylase [Roseovarius sp. TM1035] Length = 172 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 80/168 (47%), Positives = 114/168 (67%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP LR+V P++ + + L +MLE MY GIGLAA Q+GV+ RL+V+ Sbjct: 1 MKRSILIHPDPRLRKVCTPVKDVTDALRKLSQDMLETMYDAPGIGLAAPQVGVMDRLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +D P+V +NP+I FS++ SVY+EGCLSIPD ADV R A + +R+MD + Sbjct: 61 DCVKDEGATPRPIVMLNPEITAFSEEKSVYEEGCLSIPDQFADVTRPAEVEMRWMDLDGV 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL + Sbjct: 121 EHQEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKLKRE 168 >gi|319764921|ref|YP_004128858.1| peptide deformylase [Alicycliphilus denitrificans BC] gi|317119482|gb|ADV01971.1| peptide deformylase [Alicycliphilus denitrificans BC] Length = 171 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ ++ + ++D+ML MY +GIGLAA Q+ V R+VV Sbjct: 1 MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I S + + +EGCLS+P V+RS + R +D + Q Sbjct: 61 IDVSE--ERDQPLVLINPEITWASPETRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K + + Sbjct: 119 PRTIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQQ 167 >gi|254282388|ref|ZP_04957356.1| peptide deformylase [gamma proteobacterium NOR51-B] gi|219678591|gb|EED34940.1| peptide deformylase [gamma proteobacterium NOR51-B] Length = 168 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 101/169 (59%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR ++P+ +++ I LID+MLE MY GIGLAA Q+ V R++V Sbjct: 1 MAILPILEFPDPRLRTRAKPVTEVDQRIRRLIDDMLETMYDAPGIGLAASQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R P VFINP++ Y EGCLS+P + V R + I V +D Sbjct: 61 IDVSE--NRDEPRVFINPEVTVIDKTLGSYDEGCLSVPGFFETVNRPSSIEVTALDREGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DGLLA CLQHE+DHL G LF+D+LS LKR I K+ K + R Sbjct: 119 TFAEELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRSKLEKEHKRR 167 >gi|83951626|ref|ZP_00960358.1| peptide deformylase [Roseovarius nubinhibens ISM] gi|83836632|gb|EAP75929.1| peptide deformylase [Roseovarius nubinhibens ISM] Length = 172 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 113/168 (67%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V P++ I+ + L D+MLE MY GIGLA QIGV+ R++V+ Sbjct: 1 MKRPILIHPDPRLKKVCAPLDDISDAVRALADDMLETMYDAPGIGLAGPQIGVMDRIIVM 60 Query: 62 DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + D P+V +NP++I SD + Y+EGCLSIPD A+V R + VR++ + + Sbjct: 61 DCEKDEGVDPAPLVMVNPEVIASSDTLNTYEEGCLSIPDQFAEVTRPKEVEVRWLGLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 DGL ATC+QHE+DHL+G LFID+L +KR +IT+KM KL + Sbjct: 121 EHSRGFDGLWATCVQHEIDHLDGKLFIDYLGTMKRQLITRKMVKLKRE 168 >gi|83859278|ref|ZP_00952799.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633] gi|83852725|gb|EAP90578.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633] Length = 175 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L+ VS+P++ ++ + L+D+M+E MY+ DGIGLAA+Q+GV R++V Sbjct: 1 MAIREILTVPDPRLKLVSKPVDAVDDALRALMDDMVETMYAADGIGLAAIQVGVDKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL D R +P ++NP I ++D YQEGCLS+PD V+R + V Y+D + + Sbjct: 61 MDLSD--ERNDPRYYVNPVITPLTEDLKPYQEGCLSVPDVFDSVERPKKVKVEYLDYDGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+ L A C+QHE+DHL G++FID+LSRLKRD KK+ KLV+ R Sbjct: 119 KREEIAEDLFAVCIQHEMDHLEGVVFIDYLSRLKRDRAVKKVQKLVKQR 167 >gi|119773185|ref|YP_925925.1| peptide deformylase [Shewanella amazonensis SB2B] gi|119765685|gb|ABL98255.1| peptide deformylase [Shewanella amazonensis SB2B] Length = 167 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 78/167 (46%), Positives = 105/167 (62%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+ + + + ID+M E MY +GIGLAA Q+ RL+V Sbjct: 1 MPLLKVLRFPDERLRTVAKPVTEFTPALQSQIDDMFETMYEENGIGLAATQVDFHQRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFINP+I+ S DF +EGCLS+P A V R+ ITV+ +D N Sbjct: 61 MDLQDEVER--PKVFINPEIVAKSGDF-CNEEGCLSVPGVYAKVDRAELITVKALDRNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL A CLQHE+DHL G LF+D+LS LKR I +K+ K + Sbjct: 118 EFTVEADGLFAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKAAR 164 >gi|319945035|ref|ZP_08019297.1| peptide deformylase [Lautropia mirabilis ATCC 51599] gi|319741605|gb|EFV94030.1| peptide deformylase [Lautropia mirabilis ATCC 51599] Length = 170 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 101/169 (59%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V+ + ++ I L+ +M E MY+ GIGLAA Q+ V R+VV Sbjct: 1 MAVLDILKYPDARLHTVAERVPVVDDRIRKLVADMAETMYAAPGIGLAATQVNVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + VFINP+I SD Y+EGCLSIP V+R +TV + + + Sbjct: 61 IDITET--HDQLQVFINPEITWSSDTLQSYEEGCLSIPGIYDKVERPDAVTVTALGLDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHLNG LF HLSRLK++ I +K+ K+ + R Sbjct: 119 PFTLEADGLLAVCIQHEIDHLNGKLFTQHLSRLKQNRIRQKVLKMERER 167 >gi|91762408|ref|ZP_01264373.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002] gi|91718210|gb|EAS84860.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002] Length = 172 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 120/169 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++ P+ +LR++S+P+E + + L+D+ML+ MY+ GIGLAA+QIGV R++V Sbjct: 1 MSVKPILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +K P F+NP I +D S Y+EGCLS+PD A+++R V Y+D N + Sbjct: 61 MDISRDEDKKEPRYFVNPLIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+ R Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169 >gi|316932090|ref|YP_004107072.1| peptide deformylase [Rhodopseudomonas palustris DX-1] gi|315599804|gb|ADU42339.1| peptide deformylase [Rhodopseudomonas palustris DX-1] Length = 175 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ ++I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVAEVTTEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ ++ + +P FINP+I+ S + +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDIVRKEGDGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K K + Sbjct: 121 GNVREEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169 >gi|144898454|emb|CAM75318.1| peptide deformylase [Magnetospirillum gryphiswaldense MSR-1] Length = 170 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 79/168 (47%), Positives = 111/168 (66%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PDP L++ + + +++ I L+D+MLE MY+ GIGLAA Q+ V R++V Sbjct: 1 MAVLSILTAPDPRLKQKAAVVADVDASIRTLMDDMLETMYAAPGIGLAAPQVAVGKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + P+ +NP+I+ SDD + Y+EGCLS+P++ A V R I VRY D Sbjct: 61 ADIGRSEDDRQPVRMVNPEIVWVSDDDNTYEEGCLSVPEHYAAVVRPRAIRVRYRDETGT 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 HQ I ADGLLAT LQHE+DHL+GILFIDHLS LKR+MI +K+ K + Sbjct: 121 HQEIDADGLLATVLQHEMDHLDGILFIDHLSSLKRNMILRKLLKAKKE 168 >gi|329894842|ref|ZP_08270642.1| Peptide deformylase [gamma proteobacterium IMCC3088] gi|328922736|gb|EGG30070.1| Peptide deformylase [gamma proteobacterium IMCC3088] Length = 178 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 100/169 (59%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ LI +M E MY GIGLAA Q+ V R++V Sbjct: 11 MALLQILEFPDPRLRTIAKPVAEVTDQHRALIKDMFETMYQAPGIGLAATQVNVHERILV 70 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P VFINP++ + Y EGCLS+P + V R I VR ++ + Sbjct: 71 IDVSE--DKSEPRVFINPEVEVLDPELGEYDEGCLSVPGFYDTVCRPQRIKVRALNEQGE 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 GLLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K + + Sbjct: 129 AYEEELGGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEKAHRAK 177 >gi|311696635|gb|ADP99508.1| peptide deformylase [marine bacterium HP15] Length = 167 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PDP LR +++P+E++ LID+M E MY GIGLAA Q+ V +++V+ Sbjct: 1 MILEILEYPDPRLRTIAKPVEEVTDADRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + + P VFINP++ + QEGCLS+P + DV+R +R MD + + Sbjct: 61 DLSE--DKSEPRVFINPEVEVLDGEREAMQEGCLSVPGFYEDVERIEHCMIRAMDRDGKP 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A GLLA C+QHE+DHLNG LF+D+LS LKR+ I KK+ K + Sbjct: 119 FELEAKGLLAVCIQHEMDHLNGRLFVDYLSSLKRNRIRKKLEKQHK 164 >gi|330827125|ref|YP_004390428.1| peptide deformylase [Alicycliphilus denitrificans K601] gi|329312497|gb|AEB86912.1| Peptide deformylase [Alicycliphilus denitrificans K601] Length = 171 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ ++ + ++D+ML MY +GIGLAA Q+ V R+VV Sbjct: 1 MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I S + + +EGCLS+P V+RS + R +D + Q Sbjct: 61 IDVSE--ERDQPLVLINPEITWASPEMRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K + + Sbjct: 119 PRTIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQQ 167 >gi|126728524|ref|ZP_01744340.1| peptide deformylase [Sagittula stellata E-37] gi|126711489|gb|EBA10539.1| peptide deformylase [Sagittula stellata E-37] Length = 175 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V + ++ ++ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRSIIIHPDPRLKKVCDAVPDLSDELHVLADDMLETMYDAPGIGLAAPQIGVLSRLIVL 60 Query: 62 DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D D+ P+V NP++I SD+ +VY+EGCLSIP+ A+V+R + V ++D + Sbjct: 61 DCAKSDNGEDARPLVMFNPRVIASSDEQNVYEEGCLSIPEQYAEVERPRVVDVEWLDRDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGL ATC+QHE+DHL+G LFID+L L+R MIT+KM KL + R Sbjct: 121 MLRTETFDGLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMVKLKKER 170 >gi|85707836|ref|ZP_01038902.1| polypeptide deformylase [Erythrobacter sp. NAP1] gi|85689370|gb|EAQ29373.1| polypeptide deformylase [Erythrobacter sp. NAP1] Length = 190 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 115/188 (61%), Gaps = 21/188 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++ PDP L+ VS P+ ++ N ++ L ++M E MY GIGLAA+Q+GV RL Sbjct: 1 MAIREILEVPDPRLKVVSEPVREDEFNDELKQLAEDMFETMYDAPGIGLAAIQVGVPKRL 60 Query: 59 VVIDLQDHAH-------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 +VIDLQ +K P VF+NP I+ +D+ S Y EGCLS+P+ Sbjct: 61 LVIDLQPDDPDAEPVECEHDGHKHTHPATKKEPRVFVNPVILDPADELSTYNEGCLSVPE 120 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 ADV R A TV+Y D + H +GLLATCLQHE+DHL GILFIDHLSRLKR+M Sbjct: 121 IYADVDRPATCTVKYQDLDGNHHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRNMAL 180 Query: 160 KKMSKLVQ 167 KK+ KL Q Sbjct: 181 KKLKKLRQ 188 >gi|85713819|ref|ZP_01044809.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A] gi|85699723|gb|EAQ37590.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A] Length = 175 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 81/172 (47%), Positives = 117/172 (68%), Gaps = 4/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VSRPIEK+ +I L D+M E MY GIGLA +QI R++ Sbjct: 1 MAIREIIILPDKQLRLVSRPIEKVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60 Query: 61 IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL +D P +FINP+I++ S++ SVY+EGCLSIP+Y +V+R A + +R+ D Sbjct: 61 MDLARRDEDGELNPRPRIFINPEILSASEELSVYEEGCLSIPEYYEEVERPARVRIRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK +K +L Sbjct: 121 LDGKLHEEDAEGLFATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAKL 172 >gi|33591756|ref|NP_879400.1| peptide deformylase [Bordetella pertussis Tohama I] gi|33594959|ref|NP_882602.1| peptide deformylase [Bordetella parapertussis 12822] gi|33599236|ref|NP_886796.1| peptide deformylase [Bordetella bronchiseptica RB50] gi|39931022|sp|Q7VS88|DEF2_BORPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|39931030|sp|Q7W1V3|DEF1_BORPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|39931046|sp|Q7WQS9|DEF1_BORBR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|33565035|emb|CAE39984.1| polypeptide deformylase [Bordetella parapertussis] gi|33571399|emb|CAE44880.1| polypeptide deformylase [Bordetella pertussis Tohama I] gi|33575282|emb|CAE30745.1| polypeptide deformylase [Bordetella bronchiseptica RB50] gi|332381173|gb|AEE66020.1| peptide deformylase [Bordetella pertussis CS] Length = 170 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 105/170 (61%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L + ++P+ ++ I L+ +M + MY G+GLAA Q+ V R+VV Sbjct: 1 MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + V INP+I SD+ Y+EGCLS+P +V+R+A I + +D Q Sbjct: 61 IDVSEEGN--DLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLLA C+QHE+DHL+G +F+++LS LK++ I K+ K + + Sbjct: 119 PYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKAEREAE 168 >gi|226327658|ref|ZP_03803176.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198] gi|225204184|gb|EEG86538.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198] Length = 172 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 85/170 (50%), Positives = 111/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M PL+ FPD LRRV+ P+EK++ +I LID+M+E MY+ GIGLAA Q+ V R+VV Sbjct: 1 MAVLPLLRFPDERLRRVAVPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R P+ INP+II+ D+ +GCLSIPD A +R F+ VR +D N Sbjct: 61 IDVSE--NRDQPIALINPEIISTEDEVMDMMDGCLSIPDSFAPTERYRFLKVRALDRNGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A L A C+QHELDHL+G LFIDHLS LKR I KK KL +L D Sbjct: 119 EIELEASDLFAGCIQHELDHLDGKLFIDHLSPLKRQRIEKKQKKLSKLID 168 >gi|264680865|ref|YP_003280775.1| peptide deformylase [Comamonas testosteroni CNB-2] gi|262211381|gb|ACY35479.1| peptide deformylase [Comamonas testosteroni CNB-2] Length = 170 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ +++ I L+ +MLE MY GIGLAA QI V R++V Sbjct: 1 MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PM INP+I+ S++ + +EGCLS+P V+RS + V+ +D N Sbjct: 61 IDVSEK--RNEPMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDENGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K + Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166 >gi|50083493|ref|YP_045003.1| peptide deformylase [Acinetobacter sp. ADP1] gi|49529469|emb|CAG67181.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter sp. ADP1] Length = 174 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPD LR +++P+EK+ +I L +MLE MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDARLRTIAKPVEKVTDEIRQLAADMLETMYEAPGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPKI +++ Y+EGCLS+P V R++ + + ++ N + Sbjct: 61 MDLSE--EKDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVNRTSRVKIEAINLNDE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|294625234|ref|ZP_06703874.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666267|ref|ZP_06731518.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600462|gb|EFF44559.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603976|gb|EFF47376.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 170 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 81/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D R P VF+NP+I++ + +YQEGCLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDISD--ERNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|85373243|ref|YP_457305.1| peptide deformylase [Erythrobacter litoralis HTCC2594] gi|123409710|sp|Q2NCT3|DEF_ERYLH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|84786326|gb|ABC62508.1| polypeptide deformylase [Erythrobacter litoralis HTCC2594] Length = 194 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 117/192 (60%), Gaps = 25/192 (13%) Query: 1 MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++ PDP L+ VS P+ ++ N D+ L+D+M E MY+ GIGLAA+Q+GV R+ Sbjct: 1 MAIREILEVPDPRLKTVSEPVQPDEFNDDLKQLVDDMFETMYAAPGIGLAAIQVGVPKRV 60 Query: 59 VVIDLQDHAH-----------------------RKNPMVFINPKIITFSDDFSVYQEGCL 95 +VIDLQ+ + +P +FINP+II +++ S YQEGCL Sbjct: 61 LVIDLQEPDMDAEPEECGHDHGDGEGAHKHYPVKNDPRIFINPEIIDPNEELSTYQEGCL 120 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 S+P+ ADV R TV+Y D + DGLLATCLQHE+DHL GILFIDHLSRLK+ Sbjct: 121 SVPEIYADVDRPKTCTVKYQDLTGKTHQEDLDGLLATCLQHEMDHLEGILFIDHLSRLKK 180 Query: 156 DMITKKMSKLVQ 167 M KK+ K+ Q Sbjct: 181 QMALKKLKKMRQ 192 >gi|148258522|ref|YP_001243107.1| peptide deformylase [Bradyrhizobium sp. BTAi1] gi|158513291|sp|A5ESQ7|DEF_BRASB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146410695|gb|ABQ39201.1| peptide deformylase [Bradyrhizobium sp. BTAi1] Length = 175 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 80/171 (46%), Positives = 117/171 (68%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VS+P+EK+ +I L+D+M + MY GIGLAA+Q+ R++ Sbjct: 1 MSLREIIILPDKQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60 Query: 61 IDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL ++ P VFINP+II SD+ S+Y+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLAKPDAGGETKREPRVFINPEIIAKSDELSIYEEGCLSIPEYYEEVERPARVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K + Sbjct: 121 LDGVLREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVLKKFTKAAK 171 >gi|225874677|ref|YP_002756136.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196] gi|254767569|sp|C1F541|DEF_ACIC5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225792384|gb|ACO32474.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196] Length = 170 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 108/170 (63%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+ +P+V +PDP+L++ + P+ + N ++ L+D+M E MY GIGLAA QIG+ RL V Sbjct: 1 MMIRPIVKYPDPVLQQPAEPVTEFNEELRALVDDMFESMYEAKGIGLAAPQIGISKRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + +V INP+II + +EGCLS+PD R V R+ +TVR + + + Sbjct: 61 IDLSFKENPDEKIVLINPEII-HREGRQYEEEGCLSLPDIREKVVRAEKVTVRAQNLDGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + LL+ QHE+DHL+G+LFI +S LKRD++ +++ K+ + + Sbjct: 120 WFEMDGEELLSRAFQHEIDHLDGVLFIFRISALKRDLVLRRIRKMQRAGE 169 >gi|71279368|ref|YP_266802.1| polypeptide deformylase [Colwellia psychrerythraea 34H] gi|71145108|gb|AAZ25581.1| polypeptide deformylase [Colwellia psychrerythraea 34H] Length = 171 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR ++P+ I +ID+ML MY +G+GLAA Q+ + R+VV Sbjct: 1 MTILTILRFPDPRLRTKAQPVTDITDATATIIDDMLATMYEENGVGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + P++FINP+II S++ S+ +EGCLS+P A V R TV+ +D + + Sbjct: 61 MDTSEDN--DQPIIFINPEIIATSNETSINEEGCLSVPGTYAKVDRHDACTVKALDRHGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A L + C+QHELDHL G+LF+D+LS LKR I KK+ K + Sbjct: 119 EFSLNATELQSICIQHELDHLKGVLFVDYLSPLKRQRIQKKLEKEAK 165 >gi|330831510|ref|YP_004394462.1| peptide deformylase 1 [Aeromonas veronii B565] gi|328806646|gb|AEB51845.1| Peptide deformylase 1 [Aeromonas veronii B565] Length = 170 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+E ++ ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R++P+V INP++I + +EGCLS+P RA V R+ I +R +D N + Sbjct: 61 IDVSE--NREDPLVLINPEVIEQCGSTGI-EEGCLSVPGSRALVPRAEQIKIRALDRNGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165 >gi|254460256|ref|ZP_05073672.1| peptide deformylase [Rhodobacterales bacterium HTCC2083] gi|206676845|gb|EDZ41332.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083] Length = 172 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 80/168 (47%), Positives = 112/168 (66%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K ++I PDP L++V + I+ I + D+MLE MY+ GIGLAA Q+GVL R++V+ Sbjct: 1 MKLKILIHPDPRLKKVCAAVPDISDKIRSFADDMLETMYTAPGIGLAAPQVGVLERMIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ + P+V +NP++I SD+ +VY EGCLSIPD ADV R + V ++D + Sbjct: 61 DCVKEDGAKPEPLVMVNPRVIAASDETNVYDEGCLSIPDQYADVTRPKEVRVEWLDLDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q DGL ATC+QHE+DHL G LFID+L LKR MIT+KM KL + Sbjct: 121 LQKRDMDGLWATCVQHEIDHLEGKLFIDYLKPLKRQMITRKMQKLKRE 168 >gi|317049806|ref|YP_004117454.1| peptide deformylase [Pantoea sp. At-9b] gi|316951423|gb|ADU70898.1| peptide deformylase [Pantoea sp. At-9b] Length = 170 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 110/168 (65%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ P++ +++ + ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDDRLRKIAAPVKTVDAGVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +V INP+++ + + +EGCLSIP+ RA V R+ ++ VR D + Sbjct: 61 IDVSESREER--LVLINPELLEKGGETGI-EEGCLSIPEQRAFVPRAEWVKVRAQDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + DGLLA C+QHE+DHL+G LFID+LS LKR I +K+ KL + Sbjct: 118 SFELETDGLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKQKLEKLARQ 165 >gi|157959861|ref|YP_001499895.1| peptide deformylase [Shewanella pealeana ATCC 700345] gi|157844861|gb|ABV85360.1| peptide deformylase [Shewanella pealeana ATCC 700345] Length = 199 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 78/169 (46%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++PI + N + ID+M E MY GIGLAA Q+ ++L+V Sbjct: 30 MSLLKVLRFPDERLRTVAQPITEFNPALQTQIDDMFETMYEEKGIGLAATQVDYHHQLIV 89 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFIN +I S DF +EGCLS+P A V R+ F+T++ +D + + Sbjct: 90 MDLQDEVER--PKVFINLEITAKSGDF-CNEEGCLSVPGVYAKVDRAEFVTIKALDRDGK 146 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGL A CLQHELDHL+G LF+D+LS LKR I +K+ K +L Sbjct: 147 EFTLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARLE 195 >gi|284159413|ref|YP_440687.3| peptide deformylase [Burkholderia thailandensis E264] gi|83652775|gb|ABC36838.1| peptide deformylase [Burkholderia thailandensis E264] Length = 179 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 13 MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ SD VY+EGCLS+P +V+R + VR +D + Sbjct: 73 IDVSE--DKNELRVFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGE 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 131 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177 >gi|86747799|ref|YP_484295.1| peptide deformylase [Rhodopseudomonas palustris HaA2] gi|123099181|sp|Q2J2C6|DEF_RHOP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|86570827|gb|ABD05384.1| peptide deformylase [Rhodopseudomonas palustris HaA2] Length = 175 Score = 216 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ +I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ ++ + +P FINP+I+ S + +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDIVRKEGNGKSDPRAFINPEIVGASAELNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGL ATC+QHE+DHLNG+LF+DH+S+LK+ M+ +K K + Sbjct: 121 GQVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKKAMVVRKFEKAAK 169 >gi|115522683|ref|YP_779594.1| peptide deformylase [Rhodopseudomonas palustris BisA53] gi|122297684|sp|Q07TX0|DEF_RHOP5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|115516630|gb|ABJ04614.1| peptide deformylase [Rhodopseudomonas palustris BisA53] Length = 180 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 79/169 (46%), Positives = 111/169 (65%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR S+P+E ++ ++ L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIIVPDKQLRLTSKPVETVSPEVRKLADDMFETMYDAPGIGLAAIQIAEPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +DL ++ + P FINP+II S + VY+EGCLSIP+Y A+V+R A + +RY D + Sbjct: 61 MDLVRKEGNGKTEPRAFINPEIIGASTETRVYEEGCLSIPEYYAEVERPAQVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGL ATC+QHE+DHLNG LFIDH+SRLKR ++ +K K + Sbjct: 121 GHVHEEDADGLFATCIQHEIDHLNGTLFIDHISRLKRALVMRKFEKAAK 169 >gi|52842801|ref|YP_096600.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295432|ref|YP_127847.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens] gi|54298584|ref|YP_124953.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris] gi|148358671|ref|YP_001249878.1| peptide deformylase [Legionella pneumophila str. Corby] gi|296108239|ref|YP_003619940.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|52629912|gb|AAU28653.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752369|emb|CAH13801.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris] gi|53755264|emb|CAH16758.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens] gi|148280444|gb|ABQ54532.1| peptide deformylase [Legionella pneumophila str. Corby] gi|295650141|gb|ADG25988.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|307611474|emb|CBX01145.1| hypothetical protein LPW_28441 [Legionella pneumophila 130b] Length = 170 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD LR++++P+E + + LI++M + MY G+GLAA QIGV RL V Sbjct: 1 MAIRKILYLPDERLRKIAKPVETFDESLQTLINDMFDTMYDARGVGLAAPQIGVSLRLSV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ +K +V +NP+I++ + ++EGCLS+P V R+ +TV+ +D + Sbjct: 61 IDI--VGDKKEQIVIVNPEIVSSHGEKE-FEEGCLSVPGAYDTVVRAEKVTVKALDRFGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +GLLA CLQHE+DH+NG LF+D LS LKR M +K+ K +L+ Sbjct: 118 PFEITGEGLLAECLQHEIDHMNGKLFVDMLSPLKRMMARRKLDKFKRLQ 166 >gi|167834978|ref|ZP_02461861.1| peptide deformylase [Burkholderia thailandensis MSMB43] Length = 167 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+++ SD VY+EGCLS+P +V+R + VR +D + Sbjct: 61 IDVSE--EKNELRVFINPELVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 119 TFEIDCEGLLAVCIQHEMDHLIGRVFVQYLSPLKQTRIKTKMKKLER 165 >gi|304399256|ref|ZP_07381122.1| peptide deformylase [Pantoea sp. aB] gi|304353182|gb|EFM17563.1| peptide deformylase [Pantoea sp. aB] Length = 170 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 110/168 (65%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+V+ P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +V INP+++ S + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSESREER--LVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I K+ KL + Sbjct: 118 SFELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLARQ 165 >gi|91774543|ref|YP_544299.1| peptide deformylase [Methylobacillus flagellatus KT] gi|91708530|gb|ABE48458.1| peptide deformylase [Methylobacillus flagellatus KT] Length = 167 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V+ P+E++N DI L+ +M E MY+ GIGLAA Q+ V +++V Sbjct: 1 MAILDILTYPDPRLHKVAAPVEEVNDDIRQLVRDMAETMYAAPGIGLAATQVDVHKQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + VFINPKI++ Y+EGCLS+P V R+A +TV +D + + Sbjct: 61 IDLSE--DKSALQVFINPKIVSQCGS-QEYEEGCLSVPGIYEPVTRAAEVTVEALDEHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK+ I K+ K + R Sbjct: 118 PFTLKADGLLAVCIQHEIDHLLGKVFVEYLSSLKQTRIKNKLKKRQRER 166 >gi|91974563|ref|YP_567222.1| peptide deformylase [Rhodopseudomonas palustris BisB5] gi|123722270|sp|Q13F18|DEF_RHOPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|91681019|gb|ABE37321.1| peptide deformylase [Rhodopseudomonas palustris BisB5] Length = 175 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ +I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ ++ + +P FINP+I+ S + +VY+EGCLSIP+Y ADV+R A + +RY D + Sbjct: 61 MDIVRKEGNGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYADVERPAVVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHL+G+LF+DHLS+LKR M+ +K K + Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLDGVLFVDHLSKLKRAMVVRKFEKAAK 169 >gi|163859048|ref|YP_001633346.1| peptide deformylase [Bordetella petrii DSM 12804] gi|163262776|emb|CAP45079.1| polypeptide deformylase [Bordetella petrii] Length = 170 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 103/168 (61%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L + ++P+ ++ I L+ +M + MY G+GLAA Q+ V R+VV Sbjct: 1 MALLSILHYPDPRLHKKAKPVAVVDDRIRKLVRDMADTMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + V INP+I SD+ Y+EGCLS+P +V+R+A I R +D + Sbjct: 61 IDVSEEGNE--LRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRYRALDADGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA C+QHELDHL+G +F+++LS LK++ I K+ K + Sbjct: 119 PYEAEAEGLLAVCVQHELDHLDGKVFVEYLSSLKQNRIKTKLKKAERE 166 >gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1] gi|300076747|gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +++ P+ + I L+ +M E MY+ G+GLAA Q+ V ++VV Sbjct: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D KN VFINP+I+ S+D VY EGCLS+P V+R A + VR D + + Sbjct: 61 IDVSDDG--KNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G +F+++LS LKR+ I K+ K + Sbjct: 119 AFEVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166 >gi|146337885|ref|YP_001202933.1| peptide deformylase [Bradyrhizobium sp. ORS278] gi|158514293|sp|A4YLB9|DEF_BRASO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146190691|emb|CAL74695.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium sp. ORS278] Length = 175 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 81/171 (47%), Positives = 117/171 (68%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VS+P+EK+ +I L+D+M + MY GIGLAA+Q+ R++ Sbjct: 1 MSLREIIILPDRQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60 Query: 61 IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL ++ P VFINP+II SD+ SVY+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLAKPDSGGETKREPRVFINPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K + Sbjct: 121 LDGVVREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAK 171 >gi|329295654|ref|ZP_08252990.1| peptide deformylase [Plautia stali symbiont] Length = 170 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 110/168 (65%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ P+ +N+D+ ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDDRLRKIAAPVAAVNADVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +V INP+++ S + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSESREER--LVLINPELLEKSGETG-MEEGCLSIPEQRAFVPRAERVKVRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + DGLLA C+QHELDHL+G LFID+LS LKR I +K+ KL + Sbjct: 118 SFELETDGLLAICIQHELDHLDGKLFIDYLSPLKRQRIKQKLEKLARQ 165 >gi|293602354|ref|ZP_06684800.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] gi|292819116|gb|EFF78151.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] Length = 170 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 69/172 (40%), Positives = 110/172 (63%), Gaps = 4/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + ++P+ +++ I L+ +M E MY G+GLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + INP+I SDD +Y+EGCLS+P +V+R++ I + +D + + Sbjct: 61 IDVSEDSNE--LLALINPEITWRSDDHKIYEEGCLSVPGIYDEVERASRIRCKALDIDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ--LRD 170 ADGLLA C+QHELDHL G +F+++LS LK++ I K+ K + LRD Sbjct: 119 PFEFEADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKKAEREALRD 170 >gi|197286654|ref|YP_002152526.1| peptide deformylase [Proteus mirabilis HI4320] gi|227355155|ref|ZP_03839566.1| peptide deformylase [Proteus mirabilis ATCC 29906] gi|194684141|emb|CAR45570.1| peptide deformylase [Proteus mirabilis HI4320] gi|227164942|gb|EEI49789.1| peptide deformylase [Proteus mirabilis ATCC 29906] Length = 172 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 81/168 (48%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M L+ FPD LR+V+ P+EK++ +I LID+M+E MY+ GIGLAA Q+ V R+VV Sbjct: 1 MAVLTLLHFPDERLRKVATPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R P+ INP+II+ D+ +GCLSIPD A +R ++ V+ +D N Sbjct: 61 IDVSE--NRDQPIALINPEIISTEDEIMDMMDGCLSIPDSFAPTQRFRYLKVKALDRNGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A L A C+QHELDHLNG LFIDHLS LKR I KK KL +L Sbjct: 119 EIELEAADLFAGCIQHELDHLNGKLFIDHLSPLKRQRIEKKQKKLSKL 166 >gi|110678658|ref|YP_681665.1| peptide deformylase [Roseobacter denitrificans OCh 114] gi|109454774|gb|ABG30979.1| peptide deformylase [Roseobacter denitrificans OCh 114] Length = 175 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 114/168 (67%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ +++ PDP L++ + P+ I+ ++ L D+MLE MY GIGLAA Q+G+L R+VV+ Sbjct: 4 MKRSIILHPDPRLKKTAEPVADISDELRRLGDDMLETMYDAPGIGLAAPQVGILQRVVVM 63 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P++ NP++I SD+ SVY+EGCLSIP+ A+V R A + VR+MD + Sbjct: 64 DCIKEPGDTPRPVIMFNPEVIATSDETSVYEEGCLSIPEQFAEVTRPAEVEVRWMDRDGA 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q GL ATC QHE+DHL+G LFID+L L+R MIT+KM KL + Sbjct: 124 AQSEVFTGLWATCAQHEIDHLDGKLFIDYLRPLRRQMITRKMVKLKRE 171 >gi|145300986|ref|YP_001143827.1| peptide deformylase [Aeromonas salmonicida subsp. salmonicida A449] gi|158514058|sp|A4ST57|DEF_AERS4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|142853758|gb|ABO92079.1| polypeptide deformylase [Aeromonas salmonicida subsp. salmonicida A449] Length = 170 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 114/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+E ++ +++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R++P+V INP+I+ + + +EGCLS+PD+RA V R+ ++ VR +D N Q Sbjct: 61 IDVSE--NREDPLVLINPEILEQAGSTGI-EEGCLSVPDHRALVPRAEWVKVRALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMARE 165 >gi|127514664|ref|YP_001095861.1| peptide deformylase [Shewanella loihica PV-4] gi|126639959|gb|ABO25602.1| peptide deformylase [Shewanella loihica PV-4] Length = 170 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 80/169 (47%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++PI + N+++ IDNM E MY GIGLAA Q+ ++L+V Sbjct: 1 MSLLKVLRFPDERLRTIAKPITEFNAELQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFIN +II S DF +EGCLS+P A V R+ F+T++ +D + Sbjct: 61 MDLQDDVER--PKVFINLEIIEKSGDF-CNEEGCLSVPGIYAKVDRAEFVTIKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGL A CLQHELDHLNG LF+D+LS LKR I +K+ K +L Sbjct: 118 EFTLEADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARLE 166 >gi|146329347|ref|YP_001209086.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A] gi|158513298|sp|A5EWL8|DEF_DICNV RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146232817|gb|ABQ13795.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A] Length = 181 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 9/176 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I PDP LR ++P+ + + ++ NM E MY GIGLAA Q+ + RL+V Sbjct: 1 MAIYSILIHPDPRLRLPAQPVTHFDDALAEIVQNMYETMYHFHGIGLAAPQVNIQQRLIV 60 Query: 61 IDLQDHAHRK---------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +D+ + + + +V +NP+I+ S++ Y+EGCLS+P+ A V R A IT Sbjct: 61 MDVPQRSAEEGEKAEQIPSDKLVLVNPEIVQRSEECQDYEEGCLSLPNQYALVTRPANIT 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 VRY D Q A GLL+ C+QHE+DHLNG LFIDHLSRLKR+ + KK++K ++ Sbjct: 121 VRYQDITGATQERAAQGLLSVCIQHEIDHLNGGLFIDHLSRLKRERLEKKLAKSLK 176 >gi|325913842|ref|ZP_08176201.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] gi|325539917|gb|EGD11554.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] Length = 170 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 110/170 (64%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDATEVTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + P VFINP+I+T + VYQEGCLS+P ADV R+ I VRY+D Sbjct: 61 FMVIDVSE--EKNAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAIAVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K+ + Sbjct: 118 QGQAHELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKMRK 167 >gi|262089743|gb|ACY24837.1| Def peptide deformylase [uncultured organism] Length = 169 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++N + LID+M E MY G+GLAA QI V R+VV Sbjct: 1 MAILEILEFPDPRLRTIAKPVTEVNDRVRKLIDDMFETMYDAPGVGLAASQINVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + PMVFINP++ D Y EGCLS+P + V+R I+V +D + + Sbjct: 61 IDVSE--DKSQPMVFINPEVTVLDSDLHEYDEGCLSVPGFYETVERPEHISVTALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I +GLLA C+QHELDHLNG LF+D++S KR I Sbjct: 119 SFTIKPEGLLAVCIQHELDHLNGKLFVDYISSFKRTRIR 157 >gi|322513216|ref|ZP_08066342.1| peptide deformylase [Actinobacillus ureae ATCC 25976] gi|322120992|gb|EFX92833.1| peptide deformylase [Actinobacillus ureae ATCC 25976] Length = 170 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L +V P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ Sbjct: 1 MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYENEGIGLAAPQVGVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + N +V INP+I+ + + +EGCLSIP YRA V R + V+ ++ + Sbjct: 61 IDIE--GDKTNQVVLINPEILESCGETGI-EEGCLSIPGYRALVPRKEKVKVKALNRKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGL A C+QHE+DHLNG+LF+DH+S LKR I +KM KL + + Sbjct: 118 EVIYDADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQIE 167 >gi|90422323|ref|YP_530693.1| peptide deformylase [Rhodopseudomonas palustris BisB18] gi|123089811|sp|Q21B62|DEF_RHOPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|90104337|gb|ABD86374.1| peptide deformylase [Rhodopseudomonas palustris BisB18] Length = 175 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 116/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+E +++++ L D+M E MY GIGLAA+Q+ RL+ Sbjct: 1 MALREIIIIPDKQLRLISKPVETVSAEVRRLADDMFETMYEAPGIGLAAIQVAQPVRLIT 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +DL ++ P FINP++I+ S++ +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDLVRKEGNSLTEPRAFINPEVISASEEMNVYEEGCLSIPEYYAEVERPKQVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHLNG+LF+DH+S+LKR M+ +K K + Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKRAMVMRKFEKAAK 169 >gi|187476716|ref|YP_784740.1| peptide deformylase [Bordetella avium 197N] gi|115421302|emb|CAJ47807.1| peptide deformylase [Bordetella avium 197N] Length = 170 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 106/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ ++ I L+ +M E MY G+GLAA Q+ V R++V Sbjct: 1 MALLPILRYPDPRLHKVAKPVAVVDDRIRQLVKDMAETMYDAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I S++ VY+EGCLS+P +VKR+A I + +D + + Sbjct: 61 IDVSEDGNE--LRALINPEITWMSEELQVYEEGCLSVPGIYDEVKRAARIRCKALDTDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA C+QHE+DHL+G +F+++LS LK++ I ++ K + Sbjct: 119 VFEFEAEGLLAVCVQHEIDHLDGKVFVEYLSVLKQNRIKTRLKKAERE 166 >gi|24371632|ref|NP_715674.1| polypeptide deformylase [Shewanella oneidensis MR-1] gi|32363158|sp|Q8EKQ8|DEF1_SHEON RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|24345388|gb|AAN53119.1|AE015454_13 polypeptide deformylase [Shewanella oneidensis MR-1] Length = 168 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR + PI + N+++ ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLKVLRFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFINP+II S DF +EGCLS+P A V R+ F+TV+ +D + Sbjct: 61 MDLQDEVER--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K + Sbjct: 118 EFTVEADDLFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAKQ 165 >gi|326319402|ref|YP_004237074.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376238|gb|ADX48507.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 169 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 111/168 (66%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P++ ++ + L+D+MLE MY GIGLAA Q+ V R++ Sbjct: 1 MALLPILCYPDPRLHKVAQPVQAVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I+ S+D V +EGCLS+P V+RS+ + V+ +D Q Sbjct: 61 IDVSE--DRDTPLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSSAVRVQALDAQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++I A+GLLA C+QHE+DHL G +F+++LS LKR I KM K + Sbjct: 119 SRVIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQQRG 166 >gi|288941787|ref|YP_003444027.1| peptide deformylase [Allochromatium vinosum DSM 180] gi|288897159|gb|ADC62995.1| peptide deformylase [Allochromatium vinosum DSM 180] Length = 185 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR+ +RP+E+++ I L+D+MLE MY+ GIGLAA Q+ V +++V Sbjct: 1 MAILDILTFPDPRLRQKARPVEQVDDQIRRLVDDMLETMYAAPGIGLAATQVDVQRQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ FINP+++ EGCLS+P + V R+ +TV +D + + Sbjct: 61 IDVSE--GHDTPLCFINPRLVAREGTEQ-MDEGCLSVPGFFETVTRAERVTVEALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL+G LF+DH+S LKR I K+ K + R Sbjct: 118 PFKLDADGLLAVCIQHEMDHLDGKLFVDHISILKRQRIRHKLEKQRKER 166 >gi|71083162|ref|YP_265881.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062] gi|123748062|sp|Q4FNG1|DEF_PELUB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71062275|gb|AAZ21278.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062] Length = 172 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 80/169 (47%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P+ +LR++S+P+E + + L+D+ML+ MY+ GIGLAA+QIGV R++V Sbjct: 1 MSVKSILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +K P F+NP I +D S Y+EGCLS+PD A+++R V Y+D N + Sbjct: 61 MDISRDEDKKEPRYFVNPVIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+ R Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169 >gi|308188323|ref|YP_003932454.1| peptide deformylase [Pantoea vagans C9-1] gi|308058833|gb|ADO11005.1| peptide deformylase [Pantoea vagans C9-1] Length = 170 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 111/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+V+ P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +V INP+++ S + + +EGCLSIP+ RA V R+ + VR +D + + Sbjct: 61 IDVSESREER--LVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I K+ KL + Sbjct: 118 SFELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLARQ 165 >gi|21244525|ref|NP_644107.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306] gi|39931168|sp|Q8PG20|DEF2_XANAC RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|21110197|gb|AAM38643.1| polypeptide deformylase [Xanthomonas axonopodis pv. citri str. 306] Length = 170 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 112/170 (65%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E + L+D+M MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + +YQEGCLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDISD--EKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|319940733|ref|ZP_08015075.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] gi|319805884|gb|EFW02651.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] Length = 179 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 101/168 (60%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K P++ +P P L + P+ N I L+++M E MY+ G+GLAA Q+G+L R+VV Sbjct: 1 MAKLPILQYPHPKLAAKAEPVADFNDAIKTLVNDMAETMYAAPGVGLAANQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + +VFINP+II D ++EGCLS+ VKR + V + + Sbjct: 61 IDITDDNS--DLLVFINPEIIETKGDLVDHEEGCLSLKGLYEHVKRPGQVRVHAQNIEGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + GLLA C+QHE+DHLNGI+FIDHLS+LK+ K+ KL + Sbjct: 119 PFELECTGLLAVCIQHEVDHLNGIVFIDHLSQLKKQRACTKLRKLRRE 166 >gi|254251081|ref|ZP_04944399.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] gi|124893690|gb|EAY67570.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] Length = 167 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+I+ SD VY+EGCLS+P +V+R + VR ++ N + Sbjct: 61 IDVSE--EKNELRAFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDRVRVRALNENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165 >gi|325924333|ref|ZP_08185877.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] gi|325545198|gb|EGD16508.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] Length = 170 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 112/170 (65%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSPAFQRLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VFINP+I++ + +YQEGCLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDVSD--EKNLPQVFINPQIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYVDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q Q + +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 HGQAQELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|56459130|ref|YP_154411.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR] gi|81678352|sp|Q5QXI5|DEF_IDILO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56178140|gb|AAV80862.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR] Length = 174 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PD LR+V++ IEK++ +I ++ID+M E MY G+GLAA Q+ V RL V Sbjct: 1 MAKMTVLQYPDERLRKVAQKIEKVDDNIRSVIDDMFETMYEEQGVGLAATQVDVHRRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + P+VFINP+I F EGCLS P A V+R+ ITV +D N + Sbjct: 61 SDCSE--DQNEPLVFINPEITEAEGHF-KNDEGCLSFPGVYAKVERAERITVTALDKNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K +L + Sbjct: 118 RFSRSAEGLLAICIQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLAE 167 >gi|161526293|ref|YP_001581305.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|160343722|gb|ABX16808.1| peptide deformylase [Burkholderia multivorans ATCC 17616] Length = 181 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 15 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD VY+EGCLS+P +V+R + VR ++ + Sbjct: 75 IDVSE--DKNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 132 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 133 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 179 >gi|167579358|ref|ZP_02372232.1| peptide deformylase [Burkholderia thailandensis TXDOH] gi|167617459|ref|ZP_02386090.1| peptide deformylase [Burkholderia thailandensis Bt4] gi|257140665|ref|ZP_05588927.1| peptide deformylase [Burkholderia thailandensis E264] Length = 167 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ SD VY+EGCLS+P +V+R + VR +D + Sbjct: 61 IDVSE--DKNELRVFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 119 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165 >gi|299531890|ref|ZP_07045290.1| peptide deformylase [Comamonas testosteroni S44] gi|298720065|gb|EFI61022.1| peptide deformylase [Comamonas testosteroni S44] Length = 170 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ +++ I L+ +MLE MY GIGLAA QI V R++V Sbjct: 1 MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PM INP+I+ S++ + +EGCLS+P V+RS + V+ +D + Sbjct: 61 IDVSEK--RNEPMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDESGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K + Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166 >gi|78049482|ref|YP_365657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926150|ref|ZP_08187511.1| peptide deformylase [Xanthomonas perforans 91-118] gi|78037912|emb|CAJ25657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543495|gb|EGD14917.1| peptide deformylase [Xanthomonas perforans 91-118] Length = 170 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 112/170 (65%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + +YQEGCLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDISD--EKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q + ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQAQELQADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|117620047|ref|YP_854786.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561454|gb|ABK38402.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 170 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 112/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+E ++ +++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R++P+V INP+II + + +EGCLS+P RA V R+ ++ VR +D + + Sbjct: 61 IDVSE--NREDPLVLINPEIIEQAGSTGI-EEGCLSVPGSRALVPRAEWVKVRALDRHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 AFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165 >gi|145633869|ref|ZP_01789590.1| peptide deformylase [Haemophilus influenzae 3655] gi|145635938|ref|ZP_01791624.1| peptide deformylase [Haemophilus influenzae PittAA] gi|229845579|ref|ZP_04465706.1| peptide deformylase [Haemophilus influenzae 6P18H1] gi|144985241|gb|EDJ92084.1| peptide deformylase [Haemophilus influenzae 3655] gi|145266797|gb|EDK06815.1| peptide deformylase [Haemophilus influenzae PittAA] gi|229811514|gb|EEP47216.1| peptide deformylase [Haemophilus influenzae 6P18H1] Length = 169 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165 >gi|92119150|ref|YP_578879.1| peptide deformylase [Nitrobacter hamburgensis X14] gi|122990031|sp|Q1QH78|DEF_NITHX RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|91802044|gb|ABE64419.1| peptide deformylase [Nitrobacter hamburgensis X14] Length = 175 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 78/172 (45%), Positives = 113/172 (65%), Gaps = 4/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VSRPIE + +I L D+M E MY GIGLA +QI R++ Sbjct: 1 MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60 Query: 61 IDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +DL P +FINP+I++ S++ S Y+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLARRDEEGELTPRPRIFINPEILSASEELSTYEEGCLSIPEYYEEVERPARVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + A+G+ ATC+QHE+DHLNG+LF+DH+S+LKRD + KK +K +L Sbjct: 121 LDGKVHEEDAEGIYATCIQHEIDHLNGVLFVDHISKLKRDRVVKKFTKAAKL 172 >gi|254497986|ref|ZP_05110749.1| peptide deformylase [Legionella drancourtii LLAP12] gi|254352763|gb|EET11535.1| peptide deformylase [Legionella drancourtii LLAP12] Length = 171 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PDP LR +S+P+ + + LID+M E MY G+GLAA QIGV RL V Sbjct: 1 MAIHKILYLPDPRLRELSKPVVTFDDTLQTLIDDMFETMYDAHGVGLAAAQIGVSLRLSV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ +KN +V INP+II S+ S + EGCLS+P V R+ +TV+ +D + + Sbjct: 61 IDI--LGDKKNQIVIINPEIIA-SEGESKFDEGCLSVPGAYDTVTRAEKVTVKALDRHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I A+GLLA CLQHE+DH+NG LFID LS LK+ M KK+ K + Sbjct: 118 PFEIKAEGLLAECLQHEIDHMNGKLFIDMLSPLKKAMARKKLDKFKRQ 165 >gi|126172288|ref|YP_001048437.1| peptide deformylase [Shewanella baltica OS155] gi|152998582|ref|YP_001364263.1| peptide deformylase [Shewanella baltica OS185] gi|160873157|ref|YP_001552473.1| peptide deformylase [Shewanella baltica OS195] gi|217971247|ref|YP_002355998.1| peptide deformylase [Shewanella baltica OS223] gi|125995493|gb|ABN59568.1| peptide deformylase [Shewanella baltica OS155] gi|151363200|gb|ABS06200.1| peptide deformylase [Shewanella baltica OS185] gi|160858679|gb|ABX47213.1| peptide deformylase [Shewanella baltica OS195] gi|217496382|gb|ACK44575.1| peptide deformylase [Shewanella baltica OS223] gi|315265382|gb|ADT92235.1| peptide deformylase [Shewanella baltica OS678] Length = 170 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR + PI + N+++ ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFINP+II S DF +EGCLS+P A V R+ F+TV+ +D + Sbjct: 61 MDLQDEVER--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|90415408|ref|ZP_01223342.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207] gi|90332731|gb|EAS47901.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207] Length = 168 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 100/168 (59%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V++P+ +++ I LI +M + M GIGLAA QI V R++V Sbjct: 1 MAILKILEFPDPRLRTVAKPVAEVDETIKRLIADMFDTMKDAQGIGLAATQIDVHLRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + P VFINP+I + Y+EGCLS+P + V R A + +R +D + Sbjct: 61 MNLGEDD--IGPRVFINPEIEPLDESVDPYEEGCLSVPGFYEKVDRPAHVVIRALDGEGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A GLLA C+QHE+DHL G LF+D+LS KR I KK+ K+ + Sbjct: 119 AFKEEARGLLAVCIQHEIDHLEGKLFVDYLSPFKRQRIRKKLEKIHRQ 166 >gi|16272565|ref|NP_438782.1| peptide deformylase [Haemophilus influenzae Rd KW20] gi|260581531|ref|ZP_05849338.1| peptide deformylase [Haemophilus influenzae RdAW] gi|1169264|sp|P44786|DEF_HAEIN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1573618|gb|AAC22282.1| polypeptide deformylase (def) [Haemophilus influenzae Rd KW20] gi|260091805|gb|EEW75761.1| peptide deformylase [Haemophilus influenzae RdAW] Length = 169 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ K+N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165 >gi|319775435|ref|YP_004137923.1| peptide deformylase [Haemophilus influenzae F3047] gi|329122537|ref|ZP_08251120.1| peptide deformylase [Haemophilus aegyptius ATCC 11116] gi|317450026|emb|CBY86240.1| peptide deformylase [Haemophilus influenzae F3047] gi|327473142|gb|EGF18566.1| peptide deformylase [Haemophilus aegyptius ATCC 11116] Length = 169 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLKYKKQ 165 >gi|304313372|ref|YP_003812970.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1] gi|301799105|emb|CBL47348.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1] Length = 170 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 72/167 (43%), Positives = 109/167 (65%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR ++P+ + ++ + L ++MLE MY GIGLAA QI V +++V Sbjct: 1 MALLDILEFPDPRLRTQAKPVTQFDAALRKLTEDMLETMYDAPGIGLAATQINVHQQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + PMVFINP+I + Y+EGCLS+P + +V R I V+ ++ + Sbjct: 61 MDVSE--DKSQPMVFINPQITVVGGEKE-YEEGCLSVPGFHENVVRPDVIHVKALNAQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLL+ CLQHE+DHLNG+LF+DH+SRLKRD I +K+ K + Sbjct: 118 AFELQADGLLSVCLQHEMDHLNGVLFVDHISRLKRDRIRRKLEKQHK 164 >gi|167855659|ref|ZP_02478417.1| peptide deformylase [Haemophilus parasuis 29755] gi|219871701|ref|YP_002476076.1| peptide deformylase [Haemophilus parasuis SH0165] gi|254767590|sp|B8F726|DEF_HAEPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167853231|gb|EDS24487.1| peptide deformylase [Haemophilus parasuis 29755] gi|219691905|gb|ACL33128.1| N-formylmethionyl-tRNA deformylase [Haemophilus parasuis SH0165] Length = 170 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L +V +P+E +++++ IDNM + MY +GIGLAA Q+ VL R++ Sbjct: 1 MAVLDVLIYPDENLAKVCQPVETVDAELNTFIDNMFDTMYEHEGIGLAAPQVNVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + N +V INP+I+ S + + +EGCLSIP RA V R +TV+ ++ Q Sbjct: 61 IDIE--GDKTNQIVLINPEILESSGETGI-EEGCLSIPGCRALVPRKEKLTVKALNREGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHLNG+LF+DH+S+LKR I +KM KL + + Sbjct: 118 TFTLEADGLLAICIQHEIDHLNGVLFVDHISQLKRQRIKEKMLKLKKQIE 167 >gi|120613319|ref|YP_972997.1| peptide deformylase [Acidovorax citrulli AAC00-1] gi|120591783|gb|ABM35223.1| peptide deformylase [Acidovorax citrulli AAC00-1] Length = 169 Score = 214 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 110/168 (65%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P++ ++ + L+D+MLE MY GIGLAA Q+ V R++ Sbjct: 1 MALLPILCYPDPRLHKVAQPVQVVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I+ S+D V +EGCLS+P V+RS + V+ +D Q Sbjct: 61 IDVSE--DRDTPLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSTAVRVQALDAQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++I A+GLLA C+QHE+DHL G +F+++LS LKR I KM K + Sbjct: 119 SRVIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQQRG 166 >gi|68249189|ref|YP_248301.1| peptide deformylase [Haemophilus influenzae 86-028NP] gi|145629886|ref|ZP_01785678.1| peptide deformylase [Haemophilus influenzae 22.1-21] gi|145637962|ref|ZP_01793602.1| peptide deformylase [Haemophilus influenzae PittHH] gi|145639368|ref|ZP_01794973.1| peptide deformylase [Haemophilus influenzae PittII] gi|145642285|ref|ZP_01797850.1| peptide deformylase [Haemophilus influenzae R3021] gi|148826745|ref|YP_001291498.1| peptide deformylase [Haemophilus influenzae PittEE] gi|148827778|ref|YP_001292531.1| peptide deformylase [Haemophilus influenzae PittGG] gi|229846679|ref|ZP_04466787.1| peptide deformylase [Haemophilus influenzae 7P49H1] gi|81336405|sp|Q4QMV6|DEF_HAEI8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166198517|sp|A5UEB4|DEF_HAEIE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166198518|sp|A5UH92|DEF_HAEIG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|68057388|gb|AAX87641.1| peptide deformylase [Haemophilus influenzae 86-028NP] gi|144977740|gb|EDJ87687.1| peptide deformylase [Haemophilus influenzae 22.1-21] gi|145268853|gb|EDK08816.1| peptide deformylase [Haemophilus influenzae PittHH] gi|145271415|gb|EDK11327.1| peptide deformylase [Haemophilus influenzae PittII] gi|145273041|gb|EDK12922.1| peptide deformylase [Haemophilus influenzae 22.4-21] gi|148716905|gb|ABQ99115.1| peptide deformylase [Haemophilus influenzae PittEE] gi|148719020|gb|ABR00148.1| hypothetical protein CGSHiGG_06235 [Haemophilus influenzae PittGG] gi|229810772|gb|EEP46490.1| peptide deformylase [Haemophilus influenzae 7P49H1] gi|301169340|emb|CBW28939.1| peptide deformylase [Haemophilus influenzae 10810] gi|309751783|gb|ADO81767.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2866] Length = 169 Score = 214 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165 >gi|71905663|ref|YP_283250.1| peptide deformylase [Dechloromonas aromatica RCB] gi|71845284|gb|AAZ44780.1| peptide deformylase [Dechloromonas aromatica RCB] Length = 167 Score = 214 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 72/167 (43%), Positives = 104/167 (62%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP L++V+ P+ K++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLPILRFPDPRLKKVALPVAKVDDSIRKLVADMAETMYEAPGIGLAATQVDVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP + + + +EGCLS+P V+R+ + V Y+D + Sbjct: 61 IDVSE--DKSELQAFINPVL-SRCEGSQTGEEGCLSVPGIYDKVERAESVVVTYLDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGLLA CLQHELDHLNG +F+DHLS LK+ I K++K + Sbjct: 118 QQTLAADGLLAVCLQHELDHLNGTVFVDHLSLLKQTRIRNKLAKQAR 164 >gi|221201858|ref|ZP_03574895.1| peptide deformylase [Burkholderia multivorans CGD2M] gi|221207636|ref|ZP_03580644.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221214668|ref|ZP_03587638.1| peptide deformylase [Burkholderia multivorans CGD1] gi|221165558|gb|EED98034.1| peptide deformylase [Burkholderia multivorans CGD1] gi|221172482|gb|EEE04921.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221178278|gb|EEE10688.1| peptide deformylase [Burkholderia multivorans CGD2M] Length = 181 Score = 214 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 15 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD VY+EGCLS+P +V+R + VR ++ + Sbjct: 75 IDVSE--DKNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 132 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 133 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 179 >gi|113968375|ref|YP_732168.1| peptide deformylase [Shewanella sp. MR-4] gi|114045540|ref|YP_736090.1| peptide deformylase [Shewanella sp. MR-7] gi|117918494|ref|YP_867686.1| peptide deformylase [Shewanella sp. ANA-3] gi|113883059|gb|ABI37111.1| peptide deformylase [Shewanella sp. MR-4] gi|113886982|gb|ABI41033.1| peptide deformylase [Shewanella sp. MR-7] gi|117610826|gb|ABK46280.1| peptide deformylase [Shewanella sp. ANA-3] Length = 168 Score = 214 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR + P+ + +++ ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLKVLRFPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFINP+II S DF +EGCLS+P A V R+ F+TV+ +D + Sbjct: 61 MDLQDEVDR--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K + Sbjct: 118 EFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARQ 165 >gi|189348993|ref|YP_001944621.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616] gi|189333015|dbj|BAG42085.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616] Length = 167 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD VY+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSE--DKNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165 >gi|307543965|ref|YP_003896444.1| peptide deformylase [Halomonas elongata DSM 2581] gi|307215989|emb|CBV41259.1| peptide deformylase [Halomonas elongata DSM 2581] Length = 170 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K P++ FPD LR + +E ++ ++ L+D+MLE MY GIGLAA Q+ V R++V Sbjct: 1 MAKLPILEFPDERLRTEAAAVETVDDEVRQLVDDMLETMYDARGIGLAATQVDVHRRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + P+V INP+ D+ QEGCLSIP+Y A+V R+ + ++ ++ + Sbjct: 61 MDVSD--DQSAPLVLINPEYTPIGDEREPMQEGCLSIPEYYAEVPRALKVHLKALNRQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHL G+LF+D+LS LKRD + KKM K +L Sbjct: 119 PYELEAEGLLAHCIQHECDHLRGVLFVDYLSPLKRDRVMKKMQKRHKL 166 >gi|238028945|ref|YP_002913176.1| polypeptide deformylase [Burkholderia glumae BGR1] gi|237878139|gb|ACR30472.1| Polypeptide deformylase [Burkholderia glumae BGR1] Length = 167 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ ++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVAVVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + + VFINP+I+ SD +Y+EGCLS+P +V+R + VR +D Q Sbjct: 61 IDTSE--DKNELRVFINPEIVWSSDGKQIYEEGCLSVPGVYDEVERPDHVRVRALDVQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK++ I KM KL + Sbjct: 119 QFELDCEGLLAVCVQHEMDHLLGRVFVQYLSPLKQNRIKSKMKKLER 165 >gi|33152876|ref|NP_874229.1| peptide deformylase [Haemophilus ducreyi 35000HP] gi|39930849|sp|Q7VKK9|DEF_HAEDU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33149101|gb|AAP96618.1| peptide deformylase [Haemophilus ducreyi 35000HP] Length = 171 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L +V P+ +++ ++ ID+M + MY GIGLAA Q+GVL R++ Sbjct: 1 MSVLQVVLYPDDRLTKVCEPVTQVDDELNQFIDDMFDTMYQEGGIGLAASQVGVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + N +V INP+I+ + + +EGCLSIP YRA V R ITV+ ++ + Sbjct: 61 IDIE--GDKTNQVVLINPEILESCGETGI-EEGCLSIPGYRALVPRKEKITVKALNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I +AD L A C+QHE+DHLNGI+F+DH+S LKR I KM KL + Sbjct: 118 EVIYHADDLFAICIQHEIDHLNGIVFVDHISNLKRQRIKDKMQKLKKQ 165 >gi|297182651|gb|ADI18809.1| N-formylmethionyl-tRNA deformylase [uncultured SAR11 cluster bacterium HF4000_37C10] Length = 185 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 80/181 (44%), Positives = 121/181 (66%), Gaps = 11/181 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ P+ +LR S +E+++ D+ L+D+MLE MY+ GIGLAA+Q+GV R++V Sbjct: 1 MALREILTEPNKLLREKSLAVEEVDEDLQKLMDDMLETMYAAPGIGLAAIQVGVPKRVIV 60 Query: 61 IDLQDHA-----------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 +D++ RKNPM F+NP+II S + S+Y+EGCLS+P A++ RS Sbjct: 61 LDIRWRDKSESTSDEKQVERKNPMCFVNPEIIAKSTNNSIYEEGCLSVPGQFAEIARSDK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 V+Y+D Q + A+G+LATC+QHE+DHL GILFID+LS+LK+ MI KK++K + Sbjct: 121 CHVKYLDYYGQPKEFVAEGMLATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAKQKEQL 180 Query: 170 D 170 D Sbjct: 181 D 181 >gi|119503586|ref|ZP_01625669.1| peptide deformylase [marine gamma proteobacterium HTCC2080] gi|119460648|gb|EAW41740.1| peptide deformylase [marine gamma proteobacterium HTCC2080] Length = 168 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR ++ P+ +++ + L D+MLE MY GIGLAA Q+ V R++V Sbjct: 1 MAILSILEFPDPRLRTIAVPVTHVDARVQRLTDDMLETMYDAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ P +FINP + Y EGCLS+P + ++R I V D + + Sbjct: 61 IDISE--NKDQPQIFINPVVEALDQTLGEYDEGCLSVPGFYETIRRPERIRVTAKDRDGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 DGLLA CLQHE+DHL G LF+D+LS LKR I K+ K + RD Sbjct: 119 LFSRELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRGKLEKAQRQRD 168 >gi|119475268|ref|ZP_01615621.1| peptide deformylase [marine gamma proteobacterium HTCC2143] gi|119451471|gb|EAW32704.1| peptide deformylase [marine gamma proteobacterium HTCC2143] Length = 168 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++ ++ ++ I L+D+ML MY GIGLAA QI + R+VV Sbjct: 1 MTILQILEFPDPRLRTIAKTVDTVDESIRTLLDDMLVTMYDASGIGLAATQINIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P VFINP+II Y+EGCLS+P + V R I V+ +D + Sbjct: 61 IDVSETG--DQPQVFINPEIIILDGPDHEYEEGCLSVPGFHETVSRPEKIIVKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +GLLA C+QHE+DHLNG LF+DH+S+LKR I K+ K + Sbjct: 119 PFELQPEGLLAVCIQHEVDHLNGKLFVDHISQLKRKRIRAKLEKQHKQ 166 >gi|325272511|ref|ZP_08138888.1| peptide deformylase [Pseudomonas sp. TJI-51] gi|324102354|gb|EGB99823.1| peptide deformylase [Pseudomonas sp. TJI-51] Length = 168 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ + + LID+M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVTVFDDALRQLIDDMFETMYEAPGIGLAATQVNVHQQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP + +DD YQEGCLS+P + +V R + V+ D + + Sbjct: 61 MDLSE--DRSEPRVFINPTVEELTDDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K + + Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167 >gi|238752657|ref|ZP_04614128.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380] gi|238709084|gb|EEQ01331.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380] Length = 170 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 115/168 (68%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++NS+I ++D+M + MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNSEIQRIVDDMFDTMYAEEGIGLAATQVDVHLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAKL 165 >gi|254229999|ref|ZP_04923400.1| peptide deformylase [Vibrio sp. Ex25] gi|269966999|ref|ZP_06181069.1| peptide deformylase [Vibrio alginolyticus 40B] gi|151937501|gb|EDN56358.1| peptide deformylase [Vibrio sp. Ex25] gi|269828393|gb|EEZ82657.1| peptide deformylase [Vibrio alginolyticus 40B] Length = 203 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 32 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 91 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 92 IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 148 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 149 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 198 >gi|77917861|ref|YP_355676.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380] gi|77543944|gb|ABA87506.1| peptide deformylase [Pelobacter carbinolicus DSM 2380] Length = 171 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 103/170 (60%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +PDP+L+ S PI I +I L +M E MY+ G+GLAA Q+G+ +LVV Sbjct: 1 MAILPIRHYPDPVLKNKSEPILTITEEIKTLAADMAETMYAAPGVGLAAPQVGINKKLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +V INP+II D +EGCLS+P Y +KR++ + VRY + Q Sbjct: 61 MDCAPKEN-PELIVAINPEIIEREGDSFE-EEGCLSVPGYYCRIKRNSHVKVRYQNLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A GLLA QHE+DHL+G+LF+DHLS LK++M KK K+ + ++ Sbjct: 119 TVEREATGLLAIAFQHEIDHLHGLLFVDHLSSLKKNMFRKKYQKIQRQQE 168 >gi|221135272|ref|ZP_03561575.1| peptide deformylase [Glaciecola sp. HTCC2999] Length = 169 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P+ IN I L+ +M E M + G+GLAA Q+ V +++V Sbjct: 1 MAVLTVLTFPDERLRTKAKPVNDINDSIRTLVADMFETMKAERGVGLAATQVNVHQQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + P+VFINPK+I + +EGCLS+P+ A V+R+ +I V ++ + + Sbjct: 61 MDVSD--DQDTPLVFINPKVIEQRG-TKINEEGCLSVPNNYAKVERAEWIKVSALNEHGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G LF+D+LS LKR I KK+ K ++ Sbjct: 118 EFTMEAEGLLAVCIQHEMDHLQGKLFVDYLSSLKRQRIMKKLEKEARI 165 >gi|254491036|ref|ZP_05104217.1| peptide deformylase [Methylophaga thiooxidans DMS010] gi|224463549|gb|EEF79817.1| peptide deformylase [Methylophaga thiooxydans DMS010] Length = 167 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR+ + PI +N I L D+MLE MY GIGLAA Q+ + R++V Sbjct: 1 MAILNILHFPDPRLRKKAEPITDVNDKIRQLADDMLETMYDAPGIGLAATQVNIQKRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +P+V INP+I+ + ++EGCLS+P+ V R+ + ++ ++ + Sbjct: 61 IDISE--DKSDPLVLINPEIVAAEGERE-FEEGCLSVPEAYEAVIRADKVKIKAVNLQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DGLLATC+QHE+DHL+G LF+D+LS LKR I K++ K + + Sbjct: 118 DFEFTTDGLLATCVQHEIDHLDGKLFVDYLSNLKRQRIKKRLEKHQKQK 166 >gi|78067947|ref|YP_370716.1| peptide deformylase [Burkholderia sp. 383] gi|77968692|gb|ABB10072.1| peptide deformylase [Burkholderia sp. 383] Length = 167 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+I+ SD+ +Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSE--EKNELRAFINPEIVWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|86157152|ref|YP_463937.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773663|gb|ABC80500.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C] Length = 185 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+PDPIL+ V++P+++++ I L+D+M E MY+ DG+GLAA QI V R++VI Sbjct: 1 MVREIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + +NP+I+ + Y EGCLSIP DV R A + VR +D + Sbjct: 61 DTSPRQEGQTLLHLVNPEIVRGEGEL-TYTEGCLSIPGEAEDVDRFARVWVRALDRQGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA LQHE DHLNG +F+DHLS LKR++I K+M KL R Sbjct: 120 FELEADGLLAVALQHETDHLNGTMFVDHLSSLKRELIRKRMKKLKAQR 167 >gi|332289299|ref|YP_004420151.1| peptide deformylase [Gallibacterium anatis UMN179] gi|330432195|gb|AEC17254.1| peptide deformylase [Gallibacterium anatis UMN179] Length = 171 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+EK++ +I IDNM E MY +GIGLAA Q+ R++ Sbjct: 1 MAILDVLCFPDERLRTVAAPVEKVDDEIREFIDNMFETMYQQEGIGLAATQVNRHQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + N +V INP+I+ + + +EGCLS+P +R V R +TV+ +D N + Sbjct: 61 IDVE--GDKSNQLVLINPEIVESDGETGI-EEGCLSVPGFRGLVPRKEKVTVKALDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A LLA C+QHE+DHLNG++F+D+LS LKR+ I K+ K + + Sbjct: 118 PFTLEASDLLAICIQHEIDHLNGVMFVDYLSPLKRNRIKDKLVKYKKQLE 167 >gi|46143358|ref|ZP_00204456.1| COG0242: N-formylmethionyl-tRNA deformylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|190151040|ref|YP_001969565.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249953|ref|ZP_07336155.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253125|ref|ZP_07339274.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246635|ref|ZP_07528706.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248763|ref|ZP_07530776.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253382|ref|ZP_07535253.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255620|ref|ZP_07537425.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257796|ref|ZP_07539553.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260071|ref|ZP_07541783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262201|ref|ZP_07543851.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307264402|ref|ZP_07545988.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238692356|sp|B3GYT7|DEF_ACTP7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189916171|gb|ACE62423.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647807|gb|EFL78014.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651016|gb|EFL81170.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852507|gb|EFM84741.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854690|gb|EFM86880.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859061|gb|EFM91103.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861469|gb|EFM93458.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863702|gb|EFM95628.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865907|gb|EFM97783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868075|gb|EFM99901.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870218|gb|EFN01976.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 170 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L +V P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ Sbjct: 1 MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + N +V INP+I+ + + +EGCLSIP +RA V R + V+ ++ + Sbjct: 61 IDIE--GDKTNQVVLINPEILESCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGL A C+QHE+DHLNG+LF+DH+S LKR I +KM KL + + Sbjct: 118 EVIYEADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQIE 167 >gi|254361452|ref|ZP_04977592.1| peptide deformylase [Mannheimia haemolytica PHL213] gi|261491954|ref|ZP_05988531.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496243|ref|ZP_05992648.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092962|gb|EDN73988.1| peptide deformylase [Mannheimia haemolytica PHL213] gi|261308074|gb|EEY09372.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312421|gb|EEY13547.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 170 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L V P+E+++ + ID+M E MY +GIGLAA Q+GVL R++ Sbjct: 1 MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEGIGLAAPQVGVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + N +V INP+I+ S + + +EGCLSIP +RA V R + V+ ++ + Sbjct: 61 IDIE--GDKTNQVVLINPEILESSGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 II AD L A C+QHE+DHLNG+LF+DH+S LKR I +KM KL + Sbjct: 118 EIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQKLKKQ 165 >gi|58424802|gb|AAW73839.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 183 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 MV P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 14 MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 73 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + + QEGCLS+P ADV R+ ITVRY+D Sbjct: 74 FMVIDVSD--EKNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLDR 130 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 131 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 180 >gi|319897841|ref|YP_004136038.1| peptide deformylase [Haemophilus influenzae F3031] gi|317433347|emb|CBY81725.1| peptide deformylase [Haemophilus influenzae F3031] Length = 169 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVACEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLKYKKQ 165 >gi|166713738|ref|ZP_02244945.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 170 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P++ + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + + QEGCLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDVSD--EKNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|107024058|ref|YP_622385.1| peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116691145|ref|YP_836768.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|206558867|ref|YP_002229627.1| peptide deformylase [Burkholderia cenocepacia J2315] gi|105894247|gb|ABF77412.1| peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116649234|gb|ABK09875.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|198034904|emb|CAR50776.1| peptide deformylase [Burkholderia cenocepacia J2315] Length = 167 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 104/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+I+ SD Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSE--EKNELRAFINPEIVWSSDAKQTYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|22127893|ref|NP_671316.1| peptide deformylase [Yersinia pestis KIM 10] gi|45440100|ref|NP_991639.1| peptide deformylase [Yersinia pestis biovar Microtus str. 91001] gi|51597955|ref|YP_072146.1| peptide deformylase [Yersinia pseudotuberculosis IP 32953] gi|108809222|ref|YP_653138.1| peptide deformylase [Yersinia pestis Antiqua] gi|108813987|ref|YP_649754.1| peptide deformylase [Yersinia pestis Nepal516] gi|145597483|ref|YP_001161558.1| peptide deformylase [Yersinia pestis Pestoides F] gi|150260710|ref|ZP_01917438.1| polypeptide deformylase [Yersinia pestis CA88-4125] gi|153950090|ref|YP_001402830.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758] gi|162418261|ref|YP_001605206.1| peptide deformylase [Yersinia pestis Angola] gi|165927898|ref|ZP_02223730.1| peptide deformylase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936499|ref|ZP_02225067.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275] gi|166010552|ref|ZP_02231450.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213183|ref|ZP_02239218.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004] gi|167398768|ref|ZP_02304292.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419139|ref|ZP_02310892.1| peptide deformylase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425700|ref|ZP_02317453.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468246|ref|ZP_02332950.1| peptide deformylase [Yersinia pestis FV-1] gi|170022577|ref|YP_001719082.1| peptide deformylase [Yersinia pseudotuberculosis YPIII] gi|186897151|ref|YP_001874263.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+] gi|218927448|ref|YP_002345323.1| peptide deformylase [Yersinia pestis CO92] gi|229836276|ref|ZP_04456443.1| peptide deformylase [Yersinia pestis Pestoides A] gi|229840100|ref|ZP_04460259.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842182|ref|ZP_04462337.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India 195] gi|229904518|ref|ZP_04519629.1| peptide deformylase [Yersinia pestis Nepal516] gi|270488264|ref|ZP_06205338.1| peptide deformylase [Yersinia pestis KIM D27] gi|294502316|ref|YP_003566378.1| peptide deformylase [Yersinia pestis Z176003] gi|23396545|sp|Q8ZJ79|DEF_YERPE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81691640|sp|Q664V4|DEF_YERPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123073067|sp|Q1CCX6|DEF_YERPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123372104|sp|Q1C2X9|DEF_YERPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158514064|sp|A4TH23|DEF_YERPP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167012067|sp|A7FNK2|DEF_YERP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687338|sp|A9R927|DEF_YERPG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238688470|sp|B1JJH8|DEF_YERPY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238691391|sp|B2K504|DEF_YERPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21961030|gb|AAM87567.1|AE014004_5 peptide deformylase [Yersinia pestis KIM 10] gi|45434955|gb|AAS60516.1| polypeptide deformylase [Yersinia pestis biovar Microtus str. 91001] gi|51591237|emb|CAH22903.1| polypeptide deformylase [Yersinia pseudotuberculosis IP 32953] gi|108777635|gb|ABG20154.1| peptide deformylase [Yersinia pestis Nepal516] gi|108781135|gb|ABG15193.1| peptide deformylase [Yersinia pestis Antiqua] gi|115346059|emb|CAL18925.1| polypeptide deformylase [Yersinia pestis CO92] gi|145209179|gb|ABP38586.1| peptide deformylase [Yersinia pestis Pestoides F] gi|149290118|gb|EDM40195.1| polypeptide deformylase [Yersinia pestis CA88-4125] gi|152961585|gb|ABS49046.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758] gi|162351076|gb|ABX85024.1| peptide deformylase [Yersinia pestis Angola] gi|165915615|gb|EDR34224.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275] gi|165920174|gb|EDR37475.1| peptide deformylase [Yersinia pestis biovar Orientalis str. F1991016] gi|165990642|gb|EDR42943.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205481|gb|EDR49961.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004] gi|166963133|gb|EDR59154.1| peptide deformylase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051272|gb|EDR62680.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055390|gb|EDR65184.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749111|gb|ACA66629.1| peptide deformylase [Yersinia pseudotuberculosis YPIII] gi|186700177|gb|ACC90806.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+] gi|229678636|gb|EEO74741.1| peptide deformylase [Yersinia pestis Nepal516] gi|229690492|gb|EEO82546.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India 195] gi|229696466|gb|EEO86513.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706344|gb|EEO92351.1| peptide deformylase [Yersinia pestis Pestoides A] gi|262360396|gb|ACY57117.1| peptide deformylase [Yersinia pestis D106004] gi|262364346|gb|ACY60903.1| peptide deformylase [Yersinia pestis D182038] gi|270336768|gb|EFA47545.1| peptide deformylase [Yersinia pestis KIM D27] gi|294352775|gb|ADE63116.1| peptide deformylase [Yersinia pestis Z176003] gi|320013375|gb|ADV96946.1| peptide deformylase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 170 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 114/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDISE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + DGLLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|115353233|ref|YP_775072.1| peptide deformylase [Burkholderia ambifaria AMMD] gi|115283221|gb|ABI88738.1| peptide deformylase [Burkholderia ambifaria AMMD] Length = 167 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD+ +Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDISE--EKNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|126441948|ref|YP_001057204.1| polypeptide deformylase [Burkholderia pseudomallei 668] gi|126453149|ref|YP_001064443.1| polypeptide deformylase [Burkholderia pseudomallei 1106a] gi|217424946|ref|ZP_03456442.1| peptide deformylase [Burkholderia pseudomallei 576] gi|226194603|ref|ZP_03790198.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] gi|237810338|ref|YP_002894789.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|242315752|ref|ZP_04814768.1| peptide deformylase [Burkholderia pseudomallei 1106b] gi|254182253|ref|ZP_04888850.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|254197101|ref|ZP_04903524.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|126221441|gb|ABN84947.1| peptide deformylase [Burkholderia pseudomallei 668] gi|126226791|gb|ABN90331.1| peptide deformylase [Burkholderia pseudomallei 1106a] gi|169653843|gb|EDS86536.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|184212791|gb|EDU09834.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|217391966|gb|EEC31992.1| peptide deformylase [Burkholderia pseudomallei 576] gi|225933304|gb|EEH29296.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] gi|237506162|gb|ACQ98480.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|242138991|gb|EES25393.1| peptide deformylase [Burkholderia pseudomallei 1106b] Length = 179 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 13 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 73 IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 131 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177 >gi|134284113|ref|ZP_01770807.1| polypeptide deformylase [Burkholderia pseudomallei 305] gi|76578939|gb|ABA48414.1| peptide deformylase [Burkholderia pseudomallei 1710b] gi|134244565|gb|EBA44669.1| polypeptide deformylase [Burkholderia pseudomallei 305] Length = 201 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 35 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 94 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 95 IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 152 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 153 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 199 >gi|270157753|ref|ZP_06186410.1| peptide deformylase [Legionella longbeachae D-4968] gi|289163978|ref|YP_003454116.1| polypeptide deformylase [Legionella longbeachae NSW150] gi|269989778|gb|EEZ96032.1| peptide deformylase [Legionella longbeachae D-4968] gi|288857151|emb|CBJ10967.1| putative polypeptide deformylase [Legionella longbeachae NSW150] Length = 170 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V++P+ + + LI++M E MY+ G+GLAA QIG+ RL V Sbjct: 1 MAIHTILYLPDARLREVAKPVVHFDDKLQTLIEDMFETMYAAHGVGLAAPQIGIGLRLSV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ +KN +V INP+II S+ ++EGCLS+P V R+ + V+ +D + Sbjct: 61 IDI--AGDKKNQLVIINPEIIA-SEGEKKFEEGCLSVPGAYDTVIRAEKVIVKALDRTGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I ADGLLA CLQHE+DH+NG LFID LS LK+ M KK+ K + Sbjct: 118 PFEIQADGLLAECLQHEIDHMNGKLFIDLLSPLKKAMARKKLEKFKRQ 165 >gi|167585076|ref|ZP_02377464.1| peptide deformylase [Burkholderia ubonensis Bu] Length = 167 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNIIHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+++ SD VY+EGCLS+P +V+R + VR +D + Sbjct: 61 IDISE--DKSELRAFINPELVWSSDAKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKSKMKKLER 165 >gi|291619142|ref|YP_003521884.1| Def [Pantoea ananatis LMG 20103] gi|291154172|gb|ADD78756.1| Def [Pantoea ananatis LMG 20103] gi|327395471|dbj|BAK12893.1| peptide deformylase Def [Pantoea ananatis AJ13355] Length = 170 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 111/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ P++++N+D+ ++D+M E MYS +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRKIAAPVKEVNADVQRIVDDMFETMYSEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + LLA C+QHE+DHL+G LFID+LS LKR I K+ KL + Sbjct: 118 SFELETGDLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKTKLEKLARQ 165 >gi|254447455|ref|ZP_05060921.1| peptide deformylase [gamma proteobacterium HTCC5015] gi|198262798|gb|EDY87077.1| peptide deformylase [gamma proteobacterium HTCC5015] Length = 169 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 106/158 (67%), Gaps = 3/158 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR+ +P+E+++ ++ ID+M E MY GIGLAA+Q+ RL++ Sbjct: 1 MAKLEILHFPDPRLRQACKPVEQVDDELRQFIDDMFETMYDAPGIGLAAIQVNRHERLLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + A NP+VFINP+II D V QEGCLS+P + +V+R+ I V+ +D + + Sbjct: 61 TDVSEDAS--NPLVFINPEIIEA-DGVEVTQEGCLSVPGFYENVERAEHIVVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + DGL A C+QHE+DHL+G LF+D+LS LKR+ I Sbjct: 118 AFEMACDGLQAVCVQHEIDHLDGKLFVDYLSPLKRNRI 155 >gi|71898893|ref|ZP_00681060.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] gi|71731305|gb|EAO33369.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] Length = 170 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 81/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + + E ++S L+D+M E MY+ GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + PMVFINP+I+T D V+QEGCLS+P ADV R+ I VR++D Sbjct: 61 FMVIDVSE--EKNVPMVFINPEIVTKEGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K + Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167 >gi|325526701|gb|EGD04225.1| peptide deformylase [Burkholderia sp. TJI49] Length = 167 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD VY+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSE--EKNELRAFINPEIIWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165 >gi|170718226|ref|YP_001785248.1| peptide deformylase [Haemophilus somnus 2336] gi|189083072|sp|B0UWZ5|DEF_HAES2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|168826355|gb|ACA31726.1| peptide deformylase [Haemophilus somnus 2336] Length = 170 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V+ P+ + ++ IDNM E MY +GIGLAA Q+ V R++ Sbjct: 1 MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N +V INPKI+ + + +EGCLS+P R V R + V+ + + Sbjct: 61 IDIEGT--KENQIVLINPKILESFGETGI-EEGCLSLPGLRGFVPRKETVKVKAQNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ ADGLLA C+QHE+DHLNGI+F DHLS LKR + +K+ KL + Sbjct: 118 EFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQKQ 165 >gi|153003639|ref|YP_001377964.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5] gi|152027212|gb|ABS24980.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5] Length = 185 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 110/168 (65%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+PDPIL+ V+ P+E+++ I L+D+M E MY+ DG+GLAA QI VL R++VI Sbjct: 1 MVREIVIWPDPILKEVANPVERVDDSIRRLLDDMAETMYAADGVGLAAPQIAVLKRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + +NP+I+ + + EGCLSIP DV R+A + VR +D + + Sbjct: 61 DTSPRQEGQKLIHLVNPEIVRAEGET-TWTEGCLSIPGEAEDVARAAKVWVRALDYHGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA +QHE DHLNG LF+DHLS LKR++I K+M KL R Sbjct: 120 FELEADELLAIAVQHETDHLNGTLFVDHLSSLKRELIRKRMKKLKTQR 167 >gi|37681409|ref|NP_936018.1| peptide deformylase [Vibrio vulnificus YJ016] gi|39930925|sp|Q7MGK6|DEF2_VIBVY RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|37200161|dbj|BAC95989.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016] Length = 202 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 112/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 33 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 92 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + Sbjct: 93 IDISES--RNEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGH 149 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 150 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 199 >gi|53717762|ref|YP_106748.1| peptide deformylase [Burkholderia pseudomallei K96243] gi|162210090|ref|YP_331761.2| peptide deformylase [Burkholderia pseudomallei 1710b] gi|167717517|ref|ZP_02400753.1| polypeptide deformylase [Burkholderia pseudomallei DM98] gi|167736559|ref|ZP_02409333.1| polypeptide deformylase [Burkholderia pseudomallei 14] gi|167813633|ref|ZP_02445313.1| polypeptide deformylase [Burkholderia pseudomallei 91] gi|167822177|ref|ZP_02453648.1| polypeptide deformylase [Burkholderia pseudomallei 9] gi|167843768|ref|ZP_02469276.1| polypeptide deformylase [Burkholderia pseudomallei B7210] gi|167892270|ref|ZP_02479672.1| polypeptide deformylase [Burkholderia pseudomallei 7894] gi|167900763|ref|ZP_02487968.1| polypeptide deformylase [Burkholderia pseudomallei NCTC 13177] gi|167908987|ref|ZP_02496078.1| polypeptide deformylase [Burkholderia pseudomallei 112] gi|167917029|ref|ZP_02504120.1| polypeptide deformylase [Burkholderia pseudomallei BCC215] gi|254188218|ref|ZP_04894730.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|254258214|ref|ZP_04949268.1| peptide deformylase [Burkholderia pseudomallei 1710a] gi|52208176|emb|CAH34107.1| peptide deformylase [Burkholderia pseudomallei K96243] gi|157935898|gb|EDO91568.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|254216903|gb|EET06287.1| peptide deformylase [Burkholderia pseudomallei 1710a] Length = 167 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 61 IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 119 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165 >gi|223041757|ref|ZP_03611950.1| peptide deformylase [Actinobacillus minor 202] gi|240948040|ref|ZP_04752457.1| peptide deformylase [Actinobacillus minor NM305] gi|223017441|gb|EEF15859.1| peptide deformylase [Actinobacillus minor 202] gi|240297656|gb|EER48133.1| peptide deformylase [Actinobacillus minor NM305] Length = 170 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L +V P+ ++ ++ ID+M + MY +GIGLAA Q+ VL R++ Sbjct: 1 MAVLEVVLYPDENLAKVCEPVAVVDDELNRFIDDMFDTMYEHEGIGLAAPQVDVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + N +V INP+II S + + +EGCLSIP +RA V R + V+ ++ + Sbjct: 61 IDIE--GDKTNQVVLINPEIIESSGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A C+QHE+DHLNGILF+DHLS LKR I +KM KL + Sbjct: 118 EVVYDADGLFAICIQHEIDHLNGILFVDHLSPLKRQRIKEKMVKLKKQ 165 >gi|172062105|ref|YP_001809757.1| peptide deformylase [Burkholderia ambifaria MC40-6] gi|171994622|gb|ACB65541.1| peptide deformylase [Burkholderia ambifaria MC40-6] Length = 167 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD+ +Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDISE--EKNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|149375618|ref|ZP_01893387.1| polypeptide deformylase [Marinobacter algicola DG893] gi|149360020|gb|EDM48475.1| polypeptide deformylase [Marinobacter algicola DG893] Length = 167 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PDP LR +++P++++ + LID+M E MY GIGLAA Q+ V +++V+ Sbjct: 1 MILDILEYPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + + P VFINP++ + QEGCLS+P + DV R +R + + + Sbjct: 61 DLSE--DKSEPRVFINPEVEVLEGELEEMQEGCLSVPGFYEDVSRIEHCMIRAIGRDGKP 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A GLLA C+QHE+DHLNG LF+D+LS LKR I KK+ KL + Sbjct: 119 FEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLHK 164 >gi|171319440|ref|ZP_02908545.1| peptide deformylase [Burkholderia ambifaria MEX-5] gi|171095332|gb|EDT40313.1| peptide deformylase [Burkholderia ambifaria MEX-5] Length = 167 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD+ VY+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDISE--EKNELRAFINPEIIWSSDEKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 AFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|93004869|ref|YP_579306.1| peptide deformylase [Psychrobacter cryohalolentis K5] gi|123386822|sp|Q1QET1|DEF_PSYCK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|92392547|gb|ABE73822.1| peptide deformylase [Psychrobacter cryohalolentis K5] Length = 184 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 111/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR ++ P++++ ++I LI +M+E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSYPDPRLRTIATPVKEVTAEIKTLITDMIETMYDAQGIGLAASQVDHHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + +P VFINPK+ ++ Y+EGCLS+PD V+R + + +D N Sbjct: 61 MDLSE--DKDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEALDENGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +GLLA C+QHE+DHLNG++F+D+LSRLK+ K+ K++++R+ Sbjct: 119 KIDEEVEGLLAVCIQHEMDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168 >gi|170697716|ref|ZP_02888803.1| peptide deformylase [Burkholderia ambifaria IOP40-10] gi|170137331|gb|EDT05572.1| peptide deformylase [Burkholderia ambifaria IOP40-10] Length = 167 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD+ +Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDISE--EKNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 SFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|294638020|ref|ZP_06716280.1| peptide deformylase [Edwardsiella tarda ATCC 23685] gi|291088812|gb|EFE21373.1| peptide deformylase [Edwardsiella tarda ATCC 23685] Length = 171 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 112/169 (66%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ +I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHFPDERLRTIAKPVNEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ + + +EGCLS+P+ RA V R+ ITVR +D + + Sbjct: 61 IDISE--NRDQRLVLINPELLQKGGETGI-EEGCLSVPEQRALVPRAETITVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGLLA C+QHE+DHL G LFID+LS LKR I +K+ KL + + Sbjct: 118 PFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166 >gi|71276449|ref|ZP_00652725.1| Formylmethionine deformylase [Xylella fastidiosa Dixon] gi|71901278|ref|ZP_00683377.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] gi|170731000|ref|YP_001776433.1| peptide deformylase [Xylella fastidiosa M12] gi|238687947|sp|B0U4M4|DEF_XYLFM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71162765|gb|EAO12491.1| Formylmethionine deformylase [Xylella fastidiosa Dixon] gi|71728969|gb|EAO31101.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] gi|167965793|gb|ACA12803.1| Peptide deformylase [Xylella fastidiosa M12] Length = 170 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + + E ++S L+D+M E MY+ GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +V+D+ + + PMVFINP+I+T D V+QEGCLS+P ADV R+ I VR++D Sbjct: 61 FMVVDVSE--EKNAPMVFINPEIVTREGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K + Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167 >gi|145631964|ref|ZP_01787717.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae R3021] gi|144982378|gb|EDJ89955.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae R3021] gi|309973885|gb|ADO97086.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2846] Length = 169 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165 >gi|238758793|ref|ZP_04619967.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236] gi|238703090|gb|EEP95633.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236] Length = 170 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 114/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + VR +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|332976314|gb|EGK13171.1| peptide deformylase [Psychrobacter sp. 1501(2011)] Length = 176 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 109/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR ++ P++ +++DI LI +M+E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSYPDPRLRTIAEPVKTVDADIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL ++ P VFINPKI +D Y+EGCLS+PD V+R + + +D + + Sbjct: 61 MDLSENNDS--PRVFINPKITPLVEDKKPYEEGCLSVPDVYDSVERPVKVKIEALDGDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+GLLA C+QHE+DHLNG+LF+D+LS LK+ K+ K ++ R+ Sbjct: 119 PFEEIAEGLLAVCIQHEMDHLNGVLFVDYLSSLKQTRARDKVRKYLKTRE 168 >gi|186474806|ref|YP_001856276.1| peptide deformylase [Burkholderia phymatum STM815] gi|184191265|gb|ACC69230.1| peptide deformylase [Burkholderia phymatum STM815] Length = 167 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+EK++ I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVEKVDDRIRKLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D FINP+I+ SD+ +++EGCLS+P +V+R+ + VR M+ + Sbjct: 61 IDVSDTHEE--LRAFINPEILWSSDERKIHEEGCLSVPGIYDNVERAEKVRVRAMNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIKSKMKKLA 164 >gi|262277954|ref|ZP_06055747.1| peptide deformylase [alpha proteobacterium HIMB114] gi|262225057|gb|EEY75516.1| peptide deformylase [alpha proteobacterium HIMB114] Length = 171 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 78/157 (49%), Positives = 109/157 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PDPILR+ S + K+++DI L+DNMLE MY GIGLAA Q+G+L +++V Sbjct: 1 MSVLEILKEPDPILRKKSDEVSKVDNDIRALMDNMLETMYQAPGIGLAAPQVGILKKVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P+ NPKII SD+ S +EGCLSIP Y A+V R ++Y+D + + Sbjct: 61 IDLAKEDEPKKPLFIANPKIIWKSDELSSREEGCLSIPGYFAEVVRPTKCKLQYLDYDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 Q I A+ LL+TC+QHE+DH +G+LFID+LS+LK+DM Sbjct: 121 QQEIEAEDLLSTCIQHEVDHCDGVLFIDYLSKLKKDM 157 >gi|212632966|ref|YP_002309491.1| peptide deformylase [Shewanella piezotolerans WP3] gi|212554450|gb|ACJ26904.1| Polypeptide deformylase [Shewanella piezotolerans WP3] Length = 170 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 78/169 (46%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++PI + N+ + ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MSLLKVLRFPDERLRTVAKPITEFNAALQTQIDDMFETMYEEKGIGLAATQVDFHQQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFIN +II S DF +EGCLS+P A V R+ F+T++ +D + Sbjct: 61 MDLQDEIDR--PKVFINLEIIAKSGDF-CNEEGCLSVPGIYAKVDRAEFVTIKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GL A CLQHELDHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFTLEAEGLFAICLQHELDHLAGKLFVDYLSPLKRQRIKQKLEKAARLE 166 >gi|297537405|ref|YP_003673174.1| peptide deformylase [Methylotenera sp. 301] gi|297256752|gb|ADI28597.1| peptide deformylase [Methylotenera sp. 301] Length = 166 Score = 213 bits (542), Expect = 8e-54, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P++++++ I LID+M E MY GIGLAA Q+ +L++ Sbjct: 1 MAILDILNYPDPRLHKVAKPVKEVDASIRRLIDDMRETMYDAPGIGLAATQVDQHIQLLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + + + VFINPKII S Y+EGCLS+P V R+ +TV +D N + Sbjct: 61 IDTSET--KDHLQVFINPKIIEKSG-VQDYEEGCLSVPGVYETVTRAEKVTVEALDYNGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLL+ C+QHE+DHL G +F+++LS LKR I KM KL + + Sbjct: 118 PFTLKAEGLLSICIQHEMDHLLGKVFVEYLSPLKRSRIKNKMLKLTRHK 166 >gi|303326112|ref|ZP_07356555.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3] gi|302864028|gb|EFL86959.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3] Length = 172 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 1/170 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +PDP L++ P+ ++ +I L +MLE MY+ G+GLAA Q+G R++V+ Sbjct: 1 MILDIVTYPDPRLKQPCEPVTEVTDEIRKLAADMLETMYAAPGVGLAAPQVGRNIRMLVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQ 120 D K P V INP + +D QEGCLS+P +YRADV R + + ++ D + Sbjct: 61 DPAGKDEDKQPRVLINPVLELSGEDVVSEQEGCLSVPLNYRADVPRKSRVLLKATDLDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A +QHE DHL+GILFID +SRL+R + K+ K ++ ++ Sbjct: 121 GIEEDLTDFPAIIIQHEADHLDGILFIDKISRLRRTLYDSKVKKWLKRKN 170 >gi|94499926|ref|ZP_01306462.1| peptide deformylase [Oceanobacter sp. RED65] gi|94428127|gb|EAT13101.1| peptide deformylase [Oceanobacter sp. RED65] Length = 171 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+E++ LID+M E MY GIGLAA Q+ V +++V Sbjct: 1 MAILEILEFPDTRLRTIAKPVEEVTDAHRKLIDDMFETMYDCPGIGLAATQVNVHEQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + R P VFINPK+ + QEGCLS+P + DV+R + +D N Q Sbjct: 61 MDISE--DRSEPHVFINPKVTVLDGEPEKMQEGCLSVPGFYEDVERIEHCKIEALDRNGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A GLLA C+QHE+DHLNG LF+D+LS KRD I KK+ K +L Sbjct: 119 PYELEARGLLAVCIQHEMDHLNGKLFVDYLSTTKRDRIRKKLEKQHRL 166 >gi|84622203|ref|YP_449575.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899019|ref|YP_199224.2| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366143|dbj|BAE67301.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 170 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 MV P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + + QEGCLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDVSD--EKNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|197121178|ref|YP_002133129.1| peptide deformylase [Anaeromyxobacter sp. K] gi|196171027|gb|ACG72000.1| peptide deformylase [Anaeromyxobacter sp. K] Length = 185 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+PDPIL+ V++P+++++ I L+D+M E MY+ DG+GLAA QI V R++VI Sbjct: 1 MVREIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + +NP+I+ + Y EGCLSIP DV R A + VR +D + Sbjct: 61 DTSPRQEGQTLIHLVNPEIVRGEGEL-TYTEGCLSIPGEAEDVDRFARVWVRALDRQGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA LQHE DHLNG +F+DHLS LKR++I K+M KL R Sbjct: 120 FELEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167 >gi|94312496|ref|YP_585706.1| peptide deformylase [Cupriavidus metallidurans CH34] gi|93356348|gb|ABF10437.1| formylmethionine deformylase [Cupriavidus metallidurans CH34] Length = 168 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L +V++P+E ++ I L+ +M E MY GIGLAA Q+ V R++V Sbjct: 1 MAKLDILTYPDPRLHKVAKPVEVVDDRIRQLVKDMAETMYEAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R MVFINP++ S++ V++EGCLS+P+ V+R + VR +D + Sbjct: 61 IDISES--RDELMVFINPEVTWASENRKVWEEGCLSVPEVYDRVERPDRVKVRALDEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL+G +F+++LS LK I K+ K V+ R Sbjct: 119 AFELDADDLLAVCIQHEIDHLDGKVFVEYLSPLKLQRIKSKLQKRVRSR 167 >gi|298501230|ref|ZP_07011029.1| peptide deformylase [Vibrio cholerae MAK 757] gi|297540102|gb|EFH76164.1| peptide deformylase [Vibrio cholerae MAK 757] Length = 206 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 38 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 97 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 98 IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 154 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 155 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 204 >gi|15837528|ref|NP_298216.1| peptide deformylase [Xylella fastidiosa 9a5c] gi|28199634|ref|NP_779948.1| peptide deformylase [Xylella fastidiosa Temecula1] gi|182682379|ref|YP_001830539.1| peptide deformylase [Xylella fastidiosa M23] gi|54036955|sp|P63918|DEF_XYLFT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|54040743|sp|P63917|DEF_XYLFA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238691097|sp|B2I8S4|DEF_XYLF2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|9105847|gb|AAF83736.1|AE003931_13 polypeptide deformylase [Xylella fastidiosa 9a5c] gi|28057749|gb|AAO29597.1| polypeptide deformylase [Xylella fastidiosa Temecula1] gi|182632489|gb|ACB93265.1| peptide deformylase [Xylella fastidiosa M23] gi|307578661|gb|ADN62630.1| peptide deformylase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 170 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 81/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + + E ++S L+D+M E MY+ GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + PMVFINP+I+T D V+QEGCLS+P ADV R+ I VR++D Sbjct: 61 FMVIDVSE--EKNVPMVFINPEIVTREGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K + Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167 >gi|152977798|ref|YP_001343427.1| peptide deformylase [Actinobacillus succinogenes 130Z] gi|150839521|gb|ABR73492.1| peptide deformylase [Actinobacillus succinogenes 130Z] Length = 183 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V+ P+ + N ++ ID+M + MY +GIGLAA Q+ V R++ Sbjct: 13 MALLNVLIYPDERLKTVAAPVTEFNDELQTFIDDMFDTMYQEEGIGLAATQVDVHKRVIT 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +V INP+++ + + +EGCLS+P +R V R ITV+ ++ + Sbjct: 73 IDIS--GEKNEQLVLINPELLDSEGETGI-EEGCLSLPGFRGFVPRKEKITVKALNRYGE 129 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ K + Sbjct: 130 EFTLHADGLLAICIQHEMDHLNGIVFADYLSPLKRNRMKEKLVKYQRQ 177 >gi|307251005|ref|ZP_07532930.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856945|gb|EFM89076.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 170 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L +V P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ Sbjct: 1 MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + N +V INP+I+ + + +EGCLSIP +RA V R + V+ ++ + Sbjct: 61 IDIE--GDKTNQVVLINPEILGSCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGL A C+QHE+DHLNG+LF+DH+S LKR I +KM KL + + Sbjct: 118 EVIYEADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQIE 167 >gi|170734476|ref|YP_001766423.1| peptide deformylase [Burkholderia cenocepacia MC0-3] gi|254246863|ref|ZP_04940184.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184] gi|124871639|gb|EAY63355.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184] gi|169817718|gb|ACA92301.1| peptide deformylase [Burkholderia cenocepacia MC0-3] Length = 167 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+I+ SD +Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSE--EKNELRAFINPEIVWSSDAKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|300721398|ref|YP_003710669.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] gi|297627886|emb|CBJ88432.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] Length = 170 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 115/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK++++I +ID+M E MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLHYPDERLRTIAKPVEKVDAEIQRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + RK +V INP+++ S + + +EGCLS+P+ R V R I ++ +D + Q Sbjct: 61 IDVSE--DRKQLLVLINPELLNESGETGI-EEGCLSVPEQRGFVPRFEQIKIKALDYHGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +LR Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKIDRLR 166 >gi|260583339|ref|ZP_05851112.1| peptide deformylase [Haemophilus influenzae NT127] gi|260093610|gb|EEW77525.1| peptide deformylase [Haemophilus influenzae NT127] Length = 169 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N V INP+I+ + + +EGCLSIP +RA V R + VR +D + + Sbjct: 61 IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165 >gi|183600719|ref|ZP_02962212.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827] gi|188019699|gb|EDU57739.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827] Length = 174 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 112/169 (66%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK++++I ++D+M E MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLNVLHYPDERLRTIAKPVEKVDAEIQQIVDDMFETMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+++ S + + +EGCLSIP+ V R+ + VR +D N Sbjct: 61 IDVSET--RDQRLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEHVKVRALDYNGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL ++R Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRMR 166 >gi|260774554|ref|ZP_05883467.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] gi|260610460|gb|EEX35666.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] Length = 170 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 112/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R PMV INP+II + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 IDVSDS--RDQPMVLINPQIIEKRGEDGI-EEGCLSVPGSRALVPRAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFNE 167 >gi|146291135|ref|YP_001181559.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|145562825|gb|ABP73760.1| peptide deformylase [Shewanella putrefaciens CN-32] Length = 170 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++PI + ++++ IDNM E MY GIGLAA Q+ +L+V Sbjct: 1 MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFINP+II+ S DF +EGCLS+P A V R+ F+TV+ +D N Sbjct: 61 MDLQDEVER--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|134297376|ref|YP_001121111.1| peptide deformylase [Burkholderia vietnamiensis G4] gi|134140533|gb|ABO56276.1| peptide deformylase [Burkholderia vietnamiensis G4] Length = 167 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+I+ SD VY+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSE--EKNELRAFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNERGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 PFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|206889750|ref|YP_002248176.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347] gi|238058215|sp|B5YIL7|DEF_THEYD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|206741688|gb|ACI20745.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 165 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 71/163 (43%), Positives = 104/163 (63%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +PD +L++ + I +IN D+ LIDNM+E MY+ +GIGLAA Q+GVL RL+V Sbjct: 1 MAILEIKKYPDEVLKKKAETISEINGDLQKLIDNMIETMYNANGIGLAAPQVGVLKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++ +V INP+I S+ + +EGCLS+P + +KR + V+ +D N + Sbjct: 61 VDTSPREQNQSLIVLINPEITD-SEGEILSEEGCLSLPGFTTRLKRKERVIVKGLDRNGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I A GLLA LQHE+DHL+GIL ID +S LKR++ KK Sbjct: 120 EIEIEATGLLARALQHEIDHLDGILLIDKISPLKRELFRKKFK 162 >gi|238754205|ref|ZP_04615563.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473] gi|238707701|gb|EEQ00061.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473] Length = 170 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 115/168 (68%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + +++V Sbjct: 1 MSVLQVLHYPDERLRKVATPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ I +R +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKIKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +L Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLDKLAKL 165 >gi|217968557|ref|YP_002353791.1| peptide deformylase [Thauera sp. MZ1T] gi|217505884|gb|ACK52895.1| peptide deformylase [Thauera sp. MZ1T] Length = 167 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L V+ P+ +++ +I LI +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHTVAAPVGRVDDEIRRLIADMAETMYEAPGIGLAATQVDVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + M INP+I+ S + V +EGCLS+P V R+ + VR ++ + Sbjct: 61 IDVSE--DKSGLMALINPEILERSGE-QVCEEGCLSVPGIYEKVSRAERVKVRALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADGLLA C+QHE+DHL+G +F+++LS+LK I K++K ++ Sbjct: 118 SFEFEADGLLAVCVQHEIDHLDGKVFVEYLSQLKLGRIKSKLAKKARI 165 >gi|332304409|ref|YP_004432260.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171738|gb|AEE20992.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 169 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 83/168 (49%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+EKI+ I LI +MLE M +GIGLAA QI V R+VV Sbjct: 1 MAILDVLRFPDERLRTVAAPVEKIDGTIKTLISDMLETMKDENGIGLAATQINVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + NP VFINP+I T D ++ +EGCLS+P+ A V+R+ ITV +D N Sbjct: 61 IDVSEK--QDNPQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAETITVNALDENGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL G LF+D+LS LKR I K+ K +L Sbjct: 118 AFTLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165 >gi|322831106|ref|YP_004211133.1| peptide deformylase [Rahnella sp. Y9602] gi|321166307|gb|ADW72006.1| peptide deformylase [Rahnella sp. Y9602] Length = 170 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 114/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQILHFPDERLRITAKPVKEVNAEIQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIPD RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPDQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +KM K+ +L Sbjct: 118 TFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKMAKL 165 >gi|308047745|ref|YP_003911311.1| peptide deformylase [Ferrimonas balearica DSM 9799] gi|307629935|gb|ADN74237.1| peptide deformylase [Ferrimonas balearica DSM 9799] Length = 171 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR V+ P+ + L+D+M + MY GIGLAA QI +++V Sbjct: 1 MAVREVLRFPDERLRTVAEPVTDFGPALQQLVDDMFDTMYEERGIGLAATQINEHVQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R P VFINPKII F +EGCLS+P A V+R+ + D Sbjct: 61 MDHSE--DRSEPKVFINPKIIEEKGHF-TNEEGCLSVPGVYAKVERAEHVVFEAQDREGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LL+ C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 PFTVEADELLSICIQHEMDHLLGKLFVDYLSPLKRQRIKQKLEKQARL 165 >gi|209965583|ref|YP_002298498.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] gi|209959049|gb|ACI99685.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] Length = 173 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 115/170 (67%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I PD LR+ + P+ ++ + L+D+MLE MY GIGLAA Q+GVL R++V Sbjct: 1 MSLLNILIVPDARLRQTAEPVANVDGRVARLMDDMLETMYKAPGIGLAAPQVGVLERVIV 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ + P++ NP+II SD+ + QEGCLSIPD ADV R + VRY+D + Sbjct: 61 MDIAERKTEAPTPILMANPEIIARSDELATAQEGCLSIPDIYADVTRPRQVRVRYVDRDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + + ADGL ATC+QHE+DHLNG+LF+D+LS LKR M+ +++ K+ + + Sbjct: 121 EVRELDADGLTATCVQHEIDHLNGVLFVDYLSALKRSMLLRRLQKMQRNK 170 >gi|40062663|gb|AAR37584.1| polypeptide deformylase [uncultured marine bacterium 313] Length = 185 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 75/181 (41%), Positives = 120/181 (66%), Gaps = 11/181 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ P+ +LR S +++++ D+ L+++MLE MY+ GIGLAA+Q+GV R++V Sbjct: 1 MALRKILTEPNKLLREKSLTVKEVDEDLQKLMNDMLETMYAAPGIGLAAIQVGVPKRVIV 60 Query: 61 IDL-----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 +D+ + RKNP+ F+NP+IIT S + S Y+EGCLS+P A++ R Sbjct: 61 LDIGWRDKPESTNDEKQDERKNPIYFVNPEIITKSTNNSTYEEGCLSVPGQFAEIDRPDK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++Y+D Q + + A+G+ ATC+QHE+DHL GILFID+LS+LK+ MI KK++K + Sbjct: 121 CHIKYLDYYGQPKELMAEGMFATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAKQKEQL 180 Query: 170 D 170 D Sbjct: 181 D 181 >gi|303256332|ref|ZP_07342348.1| peptide deformylase [Burkholderiales bacterium 1_1_47] gi|330999027|ref|ZP_08322752.1| peptide deformylase [Parasutterella excrementihominis YIT 11859] gi|302861061|gb|EFL84136.1| peptide deformylase [Burkholderiales bacterium 1_1_47] gi|329575769|gb|EGG57295.1| peptide deformylase [Parasutterella excrementihominis YIT 11859] Length = 175 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + + + + + L +M E MY G+GLAA Q+ RL+V Sbjct: 1 MALLPILKYPDPRLATKAAVVTEFDDKLKQLAADMAETMYKAPGVGLAATQVDRHIRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + V +NP+++ S++ ++EGCLS+P V R A + V+ D Sbjct: 61 IDITE--EKNDLKVLVNPELVESSEETKPWEEGCLSLPGIYDKVTRPAKVKVKAQDLEGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + DGLLA C+QHE+DHL G +F+DHLS LK+ I K+ K+ Sbjct: 119 FFELECDGLLAVCVQHEMDHLEGTVFVDHLSMLKKQRIRHKIRKM 163 >gi|239818071|ref|YP_002946981.1| peptide deformylase [Variovorax paradoxus S110] gi|239804648|gb|ACS21715.1| peptide deformylase [Variovorax paradoxus S110] Length = 173 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 110/169 (65%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ +PD L V++P++ +++ I L+ +MLE MY GIGLAA Q+ V RLVV Sbjct: 1 MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDASGIGLAATQVDVHERLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+II SD+ + +EGCLS+P V RS + V+ +D N + Sbjct: 61 IDVSE--ERNEPLVLINPEIIWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I A+GLLA C+QHELDHL G +F+++LS LKR+ I K+ K + Sbjct: 119 LRTIEAEGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQQREE 167 >gi|126449977|ref|YP_001081879.1| polypeptide deformylase [Burkholderia mallei NCTC 10247] gi|251767985|ref|ZP_02269083.2| peptide deformylase [Burkholderia mallei PRL-20] gi|254177135|ref|ZP_04883792.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|126242847|gb|ABO05940.1| peptide deformylase [Burkholderia mallei NCTC 10247] gi|160698176|gb|EDP88146.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|243061150|gb|EES43336.1| peptide deformylase [Burkholderia mallei PRL-20] Length = 179 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 13 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 73 IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 131 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177 >gi|120596857|ref|YP_961431.1| peptide deformylase [Shewanella sp. W3-18-1] gi|120556950|gb|ABM22877.1| peptide deformylase [Shewanella sp. W3-18-1] Length = 170 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++PI + ++++ IDNM E MY GIGLAA Q+ +L+V Sbjct: 1 MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFINP+II+ S DF +EGCLS+P A V R+ F+TV+ +D N Sbjct: 61 MDLQDEIER--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|260914694|ref|ZP_05921160.1| peptide deformylase [Pasteurella dagmatis ATCC 43325] gi|260631293|gb|EEX49478.1| peptide deformylase [Pasteurella dagmatis ATCC 43325] Length = 170 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 112/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++++PD L+ V++P+E++N I ++D+M E MY +GIGLAA Q+ + R++ Sbjct: 1 MAKLNVLVYPDDRLKIVAKPVEEVNDKIREIVDDMFETMYHEEGIGLAATQVDIHQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N V INP+II + + +EGCLS+P +R V R +TV+ +D N + Sbjct: 61 IDVEGT--KENQYVLINPEIIESCGETGI-EEGCLSLPGFRGFVPRKEKVTVKALDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGI+F D+LS LKR + +K+ KL + Sbjct: 118 EYTLNADGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLVKLQKQ 165 >gi|238792969|ref|ZP_04636599.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909] gi|238727823|gb|EEQ19347.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909] Length = 170 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 114/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + VR +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|332285819|ref|YP_004417730.1| peptide deformylase [Pusillimonas sp. T7-7] gi|330429772|gb|AEC21106.1| peptide deformylase [Pusillimonas sp. T7-7] Length = 170 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 111/168 (66%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+++++ I L+ +M E MY G+GLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHKVAKPVQEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + +V INP+I+ SD+ VY+EGCLS+P +V+RSA I VR ++ + Sbjct: 61 IDVSEDGN--DLIVLINPEILWKSDEVQVYEEGCLSVPGVYDEVERSARIRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA C+QHELDHL G +F+++LS LK++ I ++ K + Sbjct: 119 PYEFDAEGLLAVCVQHELDHLLGKVFVEYLSVLKQNRIKTRLRKQERE 166 >gi|95928563|ref|ZP_01311310.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] gi|95135353|gb|EAT17005.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] Length = 171 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 72/171 (42%), Positives = 107/171 (62%), Gaps = 6/171 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +PD +L +S PI ++ +I L +M E MY+ G+GLAA Q+G+ RL+V Sbjct: 1 MSLLKIYHYPDAVLAEMSEPIAVVDDEIRQLAADMAETMYAAPGVGLAAPQVGISRRLIV 60 Query: 61 IDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D +NP + +NP+I+ D S +EGCLS+P Y A VKRS+++ VRY+D + Sbjct: 61 LDC---GGEENPELIKAVNPEILERQGD-SCEEEGCLSVPGYYAAVKRSSWVKVRYVDMD 116 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q A+GLLA C QHE+DHL+G LF+D LS LK+ M KK K+++ + Sbjct: 117 GQTVEREAEGLLAICFQHEIDHLDGKLFVDRLSSLKKGMFRKKYPKILEQQ 167 >gi|157372744|ref|YP_001480733.1| peptide deformylase [Serratia proteamaculans 568] gi|167012065|sp|A8GKG5|DEF_SERP5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157324508|gb|ABV43605.1| peptide deformylase [Serratia proteamaculans 568] Length = 169 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 116/168 (69%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+V+ P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHYPDDRLRKVAAPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+A + +R +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAAAVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|319424441|gb|ADV52515.1| peptide deformylase [Shewanella putrefaciens 200] Length = 170 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++PI + ++++ IDNM E MY GIGLAA Q+ +L+V Sbjct: 1 MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFINP+II+ S DF +EGCLS+P A V R+ F+TV+ +D N Sbjct: 61 MDLQDEVER--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ A+ L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEANELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|304412735|ref|ZP_07394338.1| peptide deformylase [Shewanella baltica OS183] gi|307305800|ref|ZP_07585546.1| peptide deformylase [Shewanella baltica BA175] gi|304348945|gb|EFM13360.1| peptide deformylase [Shewanella baltica OS183] gi|306911293|gb|EFN41719.1| peptide deformylase [Shewanella baltica BA175] Length = 170 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR + PI + N+++ ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R VFINP+II S DF +EGCLS+P A V R+ F+TV+ +D + Sbjct: 61 MDLQDEVERH--KVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|167621968|ref|YP_001672262.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] gi|167351990|gb|ABZ74603.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] Length = 199 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++PI + N+ + ID+M E MY GIGLA+ Q+ ++L+V Sbjct: 30 MSLLKVLQFPDERLRTVAKPIAEFNAALQTQIDDMFETMYEEKGIGLASTQVNYHHQLIV 89 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFIN +I+ S DF +EGCLS+P A V R+ F+T++ +D + Sbjct: 90 MDLQDDVER--PKVFINLEIVAKSGDF-CNEEGCLSVPGVYAKVDRAEFVTIKALDRDGN 146 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGL A CLQHELDHL+G LF+D+LS LKR I +K+ K +L Sbjct: 147 EFSLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARLE 195 >gi|270264340|ref|ZP_06192606.1| peptide deformylase [Serratia odorifera 4Rx13] gi|270041476|gb|EFA14574.1| peptide deformylase [Serratia odorifera 4Rx13] Length = 169 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 115/168 (68%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+V+ P++++N+ I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHYPDERLRKVAAPVKEVNATIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+A + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAANVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|123444064|ref|YP_001008034.1| peptide deformylase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238788878|ref|ZP_04632668.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641] gi|332163227|ref|YP_004299804.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|158512897|sp|A1JRZ1|DEF_YERE8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122091025|emb|CAL13908.1| polypeptide deformylase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238722905|gb|EEQ14555.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641] gi|318607709|emb|CBY29207.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica Y11] gi|325667457|gb|ADZ44101.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861818|emb|CBX71990.1| peptide deformylase [Yersinia enterocolitica W22703] Length = 170 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 114/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|239993910|ref|ZP_04714434.1| peptide deformylase [Alteromonas macleodii ATCC 27126] Length = 169 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++N +I L+ +M E M +GIGLAA Q+ ++VV Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + P VFINP+II + +EGCLS+P A V+R+ ITV+ +D N + Sbjct: 61 MDVSE--DQNEPRVFINPEIIRKDGST-ISEEGCLSVPGNYAKVERAESITVKALDQNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 118 SFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165 >gi|238783197|ref|ZP_04627223.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970] gi|238715993|gb|EEQ07979.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970] Length = 170 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 113/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + D LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELETDDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|53724672|ref|YP_101982.1| peptide deformylase [Burkholderia mallei ATCC 23344] gi|67642453|ref|ZP_00441209.1| peptide deformylase [Burkholderia mallei GB8 horse 4] gi|121600699|ref|YP_994101.1| peptide deformylase [Burkholderia mallei SAVP1] gi|254208639|ref|ZP_04914987.1| polypeptide deformylase [Burkholderia mallei JHU] gi|254360307|ref|ZP_04976577.1| polypeptide deformylase [Burkholderia mallei 2002721280] gi|52428095|gb|AAU48688.1| polypeptide deformylase [Burkholderia mallei ATCC 23344] gi|121229509|gb|ABM52027.1| polypeptide deformylase [Burkholderia mallei SAVP1] gi|147750515|gb|EDK57584.1| polypeptide deformylase [Burkholderia mallei JHU] gi|148029547|gb|EDK87452.1| polypeptide deformylase [Burkholderia mallei 2002721280] gi|238523609|gb|EEP87046.1| peptide deformylase [Burkholderia mallei GB8 horse 4] Length = 167 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 61 IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 119 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165 >gi|323524423|ref|YP_004226576.1| peptide deformylase [Burkholderia sp. CCGE1001] gi|323381425|gb|ADX53516.1| peptide deformylase [Burkholderia sp. CCGE1001] Length = 167 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSDA--HDQLLAFINPEIIWSSDEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164 >gi|109896355|ref|YP_659610.1| peptide deformylase [Pseudoalteromonas atlantica T6c] gi|109698636|gb|ABG38556.1| peptide deformylase [Pseudoalteromonas atlantica T6c] Length = 169 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 80/168 (47%), Positives = 110/168 (65%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P++KI+S I L+ +MLE M +GIGLAA QI V R+VV Sbjct: 1 MAILDVLRFPDERLRTVATPVDKIDSSIKTLVSDMLETMKDENGIGLAATQINVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P VFINP+I T D ++ +EGCLS+P+ A V+R+ +TV+ +D N Sbjct: 61 IDVSE--EQDKPQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAEKVTVKALDENGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL G LF+D+LS LKR I K+ K +L Sbjct: 118 AFTLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165 >gi|113460190|ref|YP_718247.1| peptide deformylase [Haemophilus somnus 129PT] gi|123131908|sp|Q0I181|DEF_HAES1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|112822233|gb|ABI24322.1| peptide deformylase [Haemophilus somnus 129PT] Length = 170 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V+ P+ + ++ IDNM E MY +GIGLAA Q+ V R++ Sbjct: 1 MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N +V INP+I+ + + +EGCLS+P R V R + V+ + + Sbjct: 61 IDIEGT--KENQIVLINPEILESFGETGI-EEGCLSLPGLRGFVPRKETVKVKAQNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ ADGLLA C+QHE+DHLNGI+F DHLS LKR + +K+ KL + Sbjct: 118 DFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQKQ 165 >gi|148651859|ref|YP_001278952.1| peptide deformylase [Psychrobacter sp. PRwf-1] gi|172048436|sp|A5WBG1|DEF_PSYWF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148570943|gb|ABQ93002.1| peptide deformylase [Psychrobacter sp. PRwf-1] Length = 176 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 108/170 (63%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR ++ PI+ ++++I LI +M+E MY GIGLAA Q+ +L+V Sbjct: 1 MAILPILSYPDPRLRTIAEPIKTVDAEIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL ++ P VFINPK+ +D Y+EGCLS+PD V R + + +D + Sbjct: 61 MDLSENNDS--PRVFINPKVTPLVEDKKPYEEGCLSVPDVYDSVDRPVKVKIEALDADGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+GLLA C+QHE+DHLNG+LF+D+LSRLK+ K+ K ++ R+ Sbjct: 119 AFEEIAEGLLAVCIQHEMDHLNGVLFVDYLSRLKQTRARDKVKKYLKTRE 168 >gi|119896391|ref|YP_931604.1| peptide deformylase [Azoarcus sp. BH72] gi|119668804|emb|CAL92717.1| probable peptide deformylase [Azoarcus sp. BH72] Length = 167 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L R + P++ ++ D+ LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHRRAAPVDTVDDDVRKLIDDMAETMYEAPGIGLAATQVDVHRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + M INP+I+ + V +EGCLS+P V R+ +TVR +D N Sbjct: 61 IDISE--DKSGLMALINPQILERDGE-QVCEEGCLSVPGVYEKVTRAERVTVRALDRNGH 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL+G +F+++LS LK I K++K ++ Sbjct: 118 PFEVAAEGLLAVCIQHEIDHLDGKVFVEYLSPLKLGRIKSKLAKKARI 165 >gi|115372443|ref|ZP_01459752.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|310819504|ref|YP_003951862.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|115370656|gb|EAU69582.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|309392576|gb|ADO70035.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 173 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 111/169 (65%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++I+P P+L++ +RP+ K++ + L+ +M E MY+ DG+GLAA Q+G+L R++V+ Sbjct: 1 MVREILIWPHPVLKQKARPVAKVDDAVRALVKDMFETMYAADGVGLAAPQVGILQRIIVL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D P+ INP+I+ Y EGCLSIP DV R+A +TV+++D + Q Sbjct: 61 DTTPRQPDSKPLAMINPEIVGMEGAT-TYTEGCLSIPGEAEDVDRAAIVTVKFLDVDGQE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + D LLA +QHE DHL+G +F+DH+S LKR++I K+M +L R+ Sbjct: 120 QTLTCDDLLAIAVQHETDHLDGTVFVDHVSSLKREIIRKRMKRLKTERE 168 >gi|74316032|ref|YP_313772.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259] gi|74055527|gb|AAZ95967.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC 25259] Length = 177 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PD L V++P+E +++ I L+D+M E MY+ GIGLAA Q+ V R+VV Sbjct: 1 MARLDILHYPDSRLHTVAKPVEAVDARIRKLVDDMAETMYAAPGIGLAATQVNVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R VFINP+I+ S +EGCLS+P V R+ +TVR +D + + Sbjct: 61 IDTSET--RDALRVFINPEIVAQSG-REESEEGCLSVPGVFDRVTRAERVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL G +F+D+LS LKR+ I K+ K + Sbjct: 118 PFELEADGLLAVCIQHELDHLAGKVFVDYLSPLKRNRIKTKLLKQARE 165 >gi|253997897|ref|YP_003049960.1| peptide deformylase [Methylovorus sp. SIP3-4] gi|313199962|ref|YP_004038620.1| peptide deformylase [Methylovorus sp. MP688] gi|253984576|gb|ACT49433.1| peptide deformylase [Methylovorus sp. SIP3-4] gi|312439278|gb|ADQ83384.1| peptide deformylase [Methylovorus sp. MP688] Length = 166 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L V++P++++N++I LID+M E MY+ GIGLAA Q+ V +++V Sbjct: 1 MAILDILNYPDPRLYTVAKPVKEVNANIRRLIDDMAETMYAAPGIGLAATQVDVHQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + VFINPKI Y+EGCLS+P +V R+A +TV +D N + Sbjct: 61 MDLSEA--KNELRVFINPKITAKCGA-QDYEEGCLSVPGIYENVTRAAEVTVEALDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++ A GLLA C+QHE+DHL G +F+D+LS LK++ I K+ K + R Sbjct: 118 PFVLEAQGLLAVCIQHEMDHLLGKVFVDYLSPLKQNRIKTKLKKRQRDR 166 >gi|332139430|ref|YP_004425168.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype'] gi|238693290|sp|B4S291|DEF_ALTMD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|327549452|gb|AEA96170.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype'] Length = 169 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++N +I L+ +M E M +GIGLAA Q+ ++VV Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + P VFINP+I + +EGCLS+P A V+R+ ITV+ +D N + Sbjct: 61 MDVSE--DQNEPRVFINPEITRKDGST-ISEEGCLSVPGNYAKVERAEAITVKALDQNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 118 AFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165 >gi|78224529|ref|YP_386276.1| peptide deformylase [Geobacter metallireducens GS-15] gi|78195784|gb|ABB33551.1| peptide deformylase [Geobacter metallireducens GS-15] Length = 167 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 104/167 (62%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+PIL++ + P+ IN L+ +M E MY G+GLAA QIGV R++VI Sbjct: 1 MVRTILTYPNPILKKKAVPVAVINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ R +V INP + + S +EGCLS+P Y A+V R A + V+ ++ + + Sbjct: 61 DVSQREERPELIVCINPVFVHTEGE-SYEEEGCLSVPKYSANVHRHAKVVVKALNLDGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA QHE+DHL G+LF+DHLS LKR+M KK ++V+ Sbjct: 120 VTYRAEGLLAIAFQHEIDHLEGMLFVDHLSPLKREMFKKKYRRMVEE 166 >gi|237806929|ref|YP_002891369.1| peptide deformylase [Tolumonas auensis DSM 9187] gi|259645187|sp|C4L7Y4|DEF_TOLAT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|237499190|gb|ACQ91783.1| peptide deformylase [Tolumonas auensis DSM 9187] Length = 167 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 81/167 (48%), Positives = 115/167 (68%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ PIEKI SD+ ++I++M E MY +GIGLAA Q+ + RLVV Sbjct: 1 MATLDVLRFPDERLRKIATPIEKITSDLEHIIEDMFETMYLEEGIGLAATQVNIHKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +R PMVFINP++I + + +EGCLS+P+ RA V R+ +I VR +D + + Sbjct: 61 VDTSE--NRDQPMVFINPELIEKRGETGI-EEGCLSVPECRAFVPRAEWIKVRALDRHGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I ADGLLA CLQHE+DHL G LF+D+LS LKR I +K+ KL + Sbjct: 118 PFEIEADGLLAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAR 164 >gi|317494307|ref|ZP_07952721.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917557|gb|EFV38902.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 169 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 114/169 (67%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++++ +I ++D+M + MY+ +GIGLAA Q+ V R++V Sbjct: 1 MAVLQVLHFPDERLRTVAQPVKEVTPEIQRIVDDMFDTMYAEEGIGLAATQVDVHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP++++ + + +EGCLS+P++RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLSSDGETGI-EEGCLSVPEHRALVPRAERVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + + Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLYKQQ 166 >gi|238797211|ref|ZP_04640712.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969] gi|238718848|gb|EEQ10663.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969] Length = 170 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 114/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|254293235|ref|YP_003059258.1| peptide deformylase [Hirschia baltica ATCC 49814] gi|254041766|gb|ACT58561.1| peptide deformylase [Hirschia baltica ATCC 49814] Length = 181 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 105/157 (66%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ P+P+L+ VS+P++ + +I L+D+MLE MY GIGLAA+QIG R++V Sbjct: 1 MTIRPILTVPNPLLKEVSKPVDAVTDEIRALMDDMLETMYDAPGIGLAAIQIGEPVRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D NP F+NP+I+ + Y EGCLS+P+ ++R + ++Y++ + Sbjct: 61 MDIADKDEEPNPQYFVNPEILEKVEATVPYDEGCLSVPEIYETIERPERVQIKYLNYKGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 I +A+GL ATC+QHE+DHL G LFID+LSRLKR Sbjct: 121 EVIEWAEGLYATCIQHEMDHLEGKLFIDYLSRLKRTR 157 >gi|258622990|ref|ZP_05718005.1| peptide deformylase [Vibrio mimicus VM573] gi|258584773|gb|EEW09507.1| peptide deformylase [Vibrio mimicus VM573] Length = 169 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I +ID+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 61 IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167 >gi|124385914|ref|YP_001028237.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|254203663|ref|ZP_04910023.1| polypeptide deformylase [Burkholderia mallei FMH] gi|124293934|gb|ABN03203.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|147745175|gb|EDK52255.1| polypeptide deformylase [Burkholderia mallei FMH] Length = 216 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 50 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 109 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 110 IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 167 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 168 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 214 >gi|56477100|ref|YP_158689.1| peptide deformylase [Aromatoleum aromaticum EbN1] gi|56313143|emb|CAI07788.1| N-formylmethionyl-tRNA deformylase 1 [Aromatoleum aromaticum EbN1] Length = 167 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + + P+ ++ I L+ +M E MY G+GLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHKHAAPVAVVDDSIRQLVRDMAETMYEAPGVGLAATQVDVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R FINP+I+ S + +EGCLS+P V R+ + VR +D + Sbjct: 61 IDVSE--DRSTLRAFINPEILEKSGE-QTCEEGCLSVPGVYEKVTRAERVKVRALDERGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL+G +F+++LS LK I +++K ++ Sbjct: 118 PFELEAEGLLAVCIQHEIDHLDGRVFVEYLSPLKLGRIKARLAKKARI 165 >gi|91226303|ref|ZP_01261143.1| peptide deformylase [Vibrio alginolyticus 12G01] gi|262392831|ref|YP_003284685.1| peptide deformylase [Vibrio sp. Ex25] gi|91189314|gb|EAS75593.1| peptide deformylase [Vibrio alginolyticus 12G01] gi|262336425|gb|ACY50220.1| peptide deformylase [Vibrio sp. Ex25] Length = 172 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|261416784|ref|YP_003250467.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373240|gb|ACX75985.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325617|gb|ADL24818.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 179 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 71/171 (41%), Positives = 96/171 (56%), Gaps = 3/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+ DP+LR+ PI +I ++ L +MLE MY G GLAA QIG RLVV Sbjct: 1 MAILPIRIYGDPVLRKKCEPITEITPELRQLAKDMLETMYDAPGCGLAAPQIGKNIRLVV 60 Query: 61 IDLQ-DHAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID P + NP+ D +V Y EGCLS+P+ +V R +TVR+ D N Sbjct: 61 IDTAIPDEEEPRPYIMFNPEWEAEPDAKNVDYDEGCLSLPEIFCNVVRPDRVTVRFFDIN 120 Query: 119 AQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + Q I+ +GL A C+QHE DHLNG LF+D +S R M K+ K+ + Sbjct: 121 GEAQEIHNCEGLFARCIQHECDHLNGDLFVDKISTSDRTMNQSKLRKMAKE 171 >gi|170694015|ref|ZP_02885171.1| peptide deformylase [Burkholderia graminis C4D1M] gi|170141087|gb|EDT09259.1| peptide deformylase [Burkholderia graminis C4D1M] Length = 167 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + FINP+I+ S++ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSDA--HDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGHVFVEYLSPLKQTRIKSKMKKLA 164 >gi|220915878|ref|YP_002491182.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953732|gb|ACL64116.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1] Length = 185 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+PDPIL+ V+ P+++++ I L+D+M E MY+ DG+GLAA QI V R++VI Sbjct: 1 MVREIVIWPDPILKEVAHPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + +NP+I+ + Y EGCLSIP DV R A + VR +D + + Sbjct: 61 DTSPRQEGQTLIHLVNPEIVRGEGEL-TYTEGCLSIPGEAEDVDRFARVWVRALDYHGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA LQHE DHLNG +F+DHLS LKR++I K+M KL R Sbjct: 120 FELEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167 >gi|167561029|ref|ZP_02353945.1| peptide deformylase [Burkholderia oklahomensis EO147] gi|167568291|ref|ZP_02361165.1| peptide deformylase [Burkholderia oklahomensis C6786] Length = 167 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 104/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 119 SFEIDCEGLLAVCVQHEMDHLMGRVFVQYLSSLKQSRIKTKMKKLER 165 >gi|238763701|ref|ZP_04624660.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638] gi|238698003|gb|EEP90761.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638] Length = 170 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 114/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|94264678|ref|ZP_01288460.1| Peptide deformylase [delta proteobacterium MLMS-1] gi|93454909|gb|EAT05153.1| Peptide deformylase [delta proteobacterium MLMS-1] Length = 263 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 70/184 (38%), Positives = 106/184 (57%), Gaps = 19/184 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP+ L+ +RP+ + + + L+ +M+ M+ G+GLAA Q+GV ++VV Sbjct: 72 MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131 Query: 61 I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 I D +D A +NP +V INP+++ + V +EGCLS+ DY + Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 VKR A + V +D + Q I A+G A LQHE+DHL G LFID LS LKR + KK+ Sbjct: 191 KVKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250 Query: 163 SKLV 166 K++ Sbjct: 251 KKII 254 >gi|84514541|ref|ZP_01001905.1| peptide deformylase [Loktanella vestfoldensis SKA53] gi|84511592|gb|EAQ08045.1| peptide deformylase [Loktanella vestfoldensis SKA53] Length = 173 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 84/169 (49%), Positives = 113/169 (66%), Gaps = 1/169 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP L++V+ P+ I+ D+ L D+MLE MY GIGLAA Q+ V+ R++V Sbjct: 1 MTIRPILIHPDPRLKKVTAPVASIDDDLRRLADDMLETMYEAPGIGLAAPQVAVMRRVIV 60 Query: 61 IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D Q D PMV INP+II S+ SVY EGCLSIP+ A+V R A + V ++ + Sbjct: 61 MDCQKDAEATPEPMVLINPEIIWSSEATSVYDEGCLSIPEQYAEVTRPAEVEVAWLGLDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + Q DGL ATC+QHE+DHL+G LFID L LKR MIT+KM KL + Sbjct: 121 KPQRARFDGLWATCVQHEIDHLDGKLFIDCLGPLKRQMITRKMQKLKRE 169 >gi|152981308|ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium sp. Marseille] gi|151281385|gb|ABR89795.1| polypeptide deformylase [Janthinobacterium sp. Marseille] Length = 178 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ + I L+ +M E MY G+GLAA Q+ V +++V Sbjct: 1 MSILNILRYPDPRLHKVAKPVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + +INP+II S + VY EGCLS+P V+R A + VR D + + Sbjct: 61 IDTSET--HTELRAYINPEIIWASPEMQVYDEGCLSVPGVYDGVERHAKVKVRAFDADGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G +F+++LS LKR+ I KM K + Sbjct: 119 QFELEADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERE 166 >gi|152994060|ref|YP_001338895.1| peptide deformylase [Marinomonas sp. MWYL1] gi|150834984|gb|ABR68960.1| peptide deformylase [Marinomonas sp. MWYL1] Length = 181 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR++++PI K ++ ID+ML+ MY +G+GLAA Q+ +RLVV Sbjct: 11 MAVLTVLEYPDKRLRKIAKPITKFTDELQTKIDDMLDTMYDENGLGLAATQVDYHHRLVV 70 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R P+VFINP+ D+ + +QEGCLS+P + + R+A + V+ +D N + Sbjct: 71 MDFSE--ERNEPIVFINPEFEVLDDEPNEFQEGCLSVPGFYEHIYRAAKVRVKALDRNGK 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + D L+A C+QHE+DHL+G L +D+L+ LKR+ I K+ K +L Sbjct: 129 PFTLEVDELMAVCVQHEVDHLDGKLMVDYLTPLKRNRIKSKLEKAHKL 176 >gi|319796457|ref|YP_004158097.1| peptide deformylase [Variovorax paradoxus EPS] gi|315598920|gb|ADU39986.1| peptide deformylase [Variovorax paradoxus EPS] Length = 172 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 110/169 (65%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ +PD L V++P++ +++ I L+ +MLE MY +GIGLAA QI V RLVV Sbjct: 1 MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDAEGIGLAATQIDVHERLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I SD+ + +EGCLS+P V RS + V+ +D N + Sbjct: 61 IDVSE--ERNKPIVLINPEITWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I ADGLLA C+QHELDHL G +F+++LS LKR+ I K+ K + Sbjct: 119 MRTIEADGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQQREE 167 >gi|258626114|ref|ZP_05720965.1| peptide deformylase [Vibrio mimicus VM603] gi|262166814|ref|ZP_06034551.1| peptide deformylase [Vibrio mimicus VM223] gi|262172812|ref|ZP_06040490.1| peptide deformylase [Vibrio mimicus MB-451] gi|258581640|gb|EEW06538.1| peptide deformylase [Vibrio mimicus VM603] gi|261893888|gb|EEY39874.1| peptide deformylase [Vibrio mimicus MB-451] gi|262026530|gb|EEY45198.1| peptide deformylase [Vibrio mimicus VM223] Length = 169 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 61 IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167 >gi|262402048|ref|ZP_06078612.1| peptide deformylase [Vibrio sp. RC586] gi|262351694|gb|EEZ00826.1| peptide deformylase [Vibrio sp. RC586] Length = 169 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I +ID+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ D N Q Sbjct: 61 IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKAQDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKVKRFNE 167 >gi|255326017|ref|ZP_05367105.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] gi|255296908|gb|EET76237.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] Length = 228 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 9/171 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+VI +P+L R + P+ + N ++ L+ +M E M +++G+GLAA QIGV R+ Sbjct: 40 AIRPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTY 99 Query: 62 DLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +++ INP KI T D +EGCLS P Y +KR+ ++TV +D Sbjct: 100 KMENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLD 159 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A G A C+QHE DHL+G L+++ L++ T KM K+V+ Sbjct: 160 EHGNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 206 >gi|261213229|ref|ZP_05927511.1| peptide deformylase [Vibrio sp. RC341] gi|260837503|gb|EEX64206.1| peptide deformylase [Vibrio sp. RC341] Length = 190 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 82 IDISET--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALDRNGQ 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 139 EYRFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188 >gi|114800420|ref|YP_759242.1| peptide deformylase [Hyphomonas neptunium ATCC 15444] gi|123028362|sp|Q0C4V1|DEF_HYPNA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114740594|gb|ABI78719.1| peptide deformylase [Hyphomonas neptunium ATCC 15444] Length = 176 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ PDP L++VS+P+E + DI L+D+MLE MY GIGLAA+QIGV R++ Sbjct: 1 MAIREILTVPDPRLKQVSKPVEGGVTDDIRALMDDMLETMYDAPGIGLAAIQIGVPLRVI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+DL P F+NP+I+ ++ Y+EGCLS+PD V+RSA +RY+D + Sbjct: 61 VMDLAREGEEPAPRYFVNPEILETIEEKKPYEEGCLSVPDIFDQVERSARCRIRYLDYDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +A+ L A C+QHE+DHL G LFID+LSRLKRD K+ K ++R Sbjct: 121 KQVDEWAEDLYAVCIQHEMDHLEGTLFIDYLSRLKRDRAIDKVKK-AKIR 169 >gi|292493779|ref|YP_003529218.1| peptide deformylase [Nitrosococcus halophilus Nc4] gi|291582374|gb|ADE16831.1| peptide deformylase [Nitrosococcus halophilus Nc4] Length = 167 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 80/168 (47%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP LRR ++P+ ++ I L D+MLE MY GIGLAA+Q+ V R+VV Sbjct: 1 MAILNILHYPDPRLRRKAQPVATVDESIKKLADDMLETMYQAPGIGLAAIQVNVPKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +P+V INP+I+ + EGCLS+P+ V R+A ITVRY+D Q Sbjct: 61 IDISE--DKSSPLVLINPEIVARRG-KAESDEGCLSVPEIFEPVTRAAEITVRYLDREGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + A LLATC+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 118 EQELEAQELLATCIQHELDHLEGKLFIDYLSTLKRQRIRKKVEKRQRL 165 >gi|253991650|ref|YP_003043006.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783100|emb|CAQ86265.1| peptide deformylase [Photorhabdus asymbiotica] Length = 170 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 113/169 (66%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR ++ P+EK+++ I +++D+M E MY+ DGIGLAA Q+ + R++V Sbjct: 1 MPILQILHYPDERLRTIATPVEKVDAKIQSIVDDMFETMYAEDGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R +V INP+++ + + +EGCLSIP+ RA V R+ + +R +D N Q Sbjct: 61 IDVSDT--RNERLVLINPELLEKNGKTGI-EEGCLSIPEQRALVSRAEKVKIRALDYNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + R Sbjct: 118 SFELQADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLYKQR 166 >gi|294338535|emb|CAZ86864.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp. 3As] Length = 168 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L V++P+ ++ + L+ M E MY+++G+GLAA Q+ V R++V Sbjct: 1 MEQLTIIQYPDPRLYTVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R P+ INP+I+ S + ++EGCLS+P V R A + VR +D Q Sbjct: 61 MDTSE--ERNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A C+QHE+DHL G +F+D+LS LKR+ I KM K + Sbjct: 119 PFEMDADGLTAVCIQHEMDHLLGKVFVDYLSPLKRNRIKTKMLKRQRQ 166 >gi|28899816|ref|NP_799421.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|153837667|ref|ZP_01990334.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] gi|260362018|ref|ZP_05775023.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|260876495|ref|ZP_05888850.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|260897448|ref|ZP_05905944.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|260901339|ref|ZP_05909734.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|31076643|sp|Q87KD5|DEF1_VIBPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|28808068|dbj|BAC61305.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|149748957|gb|EDM59784.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] gi|308087895|gb|EFO37590.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|308090413|gb|EFO40108.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|308109891|gb|EFO47431.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|308114143|gb|EFO51683.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|328471167|gb|EGF42069.1| peptide deformylase [Vibrio parahaemolyticus 10329] Length = 172 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++ + +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVDAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|323493839|ref|ZP_08098957.1| peptide deformylase [Vibrio brasiliensis LMG 20546] gi|323311973|gb|EGA65119.1| peptide deformylase [Vibrio brasiliensis LMG 20546] Length = 172 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R PMV INP+II + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 IDVSDT--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|320539229|ref|ZP_08038900.1| peptide deformylase [Serratia symbiotica str. Tucson] gi|320030867|gb|EFW12875.1| peptide deformylase [Serratia symbiotica str. Tucson] Length = 169 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 115/168 (68%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDDRLRKIAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ +R +V INP+++ S + + +EGCLS+P+ RA V R+A + +R +D + + Sbjct: 61 IDIS--NNRDQRLVLINPELLEKSGETGI-EEGCLSLPEQRALVPRAANVKIRALDFDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|261856667|ref|YP_003263950.1| peptide deformylase [Halothiobacillus neapolitanus c2] gi|261837136|gb|ACX96903.1| peptide deformylase [Halothiobacillus neapolitanus c2] Length = 171 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +++FPD LRRV+ +++ ++ + L + MLE MY G+GLAA QI V R+ V Sbjct: 1 MSLLEVLLFPDERLRRVAAEVKQFDARVQRLSEQMLETMYDARGVGLAATQIDVHERMFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P+VFINP I+ S +EGCLSIP V R+ + VR + + Sbjct: 61 ADCAEDGCAPEPLVFINPVILDRSGSVES-EEGCLSIPGVTDKVMRAEAVRVRAQNAFGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A GLLA C+QHE+DHL+G LFID+LS LKR I KK+ K ++ ++ Sbjct: 120 SFEREAGGLLAICIQHEIDHLDGRLFIDYLSPLKRQRIRKKLEKALRQKE 169 >gi|301155307|emb|CBW14773.1| peptide deformylase [Haemophilus parainfluenzae T3T1] Length = 169 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 112/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N DI ++D+M + MY +GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVVEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N +V INP+I+ + + +EGCLSIP +RA V R +TV+ +D + + Sbjct: 61 IDIE--GDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVKYKKQ 165 >gi|268593574|ref|ZP_06127795.1| peptide deformylase [Providencia rettgeri DSM 1131] gi|291310851|gb|EFE51304.1| peptide deformylase [Providencia rettgeri DSM 1131] Length = 173 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 113/169 (66%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P++K+++ I ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLNVLHYPDERLRTIAKPVDKVDASIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R + +V INP+++ S + + +EGCLSIP+ V R+ + VR ++ N + Sbjct: 61 IDVSET--RDDRLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEQVKVRALNYNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +LR Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166 >gi|90406714|ref|ZP_01214907.1| peptide deformylase [Psychromonas sp. CNPT3] gi|90312167|gb|EAS40259.1| peptide deformylase [Psychromonas sp. CNPT3] Length = 170 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V++ + +++++ +M++ MY +G+GLAA Q+ + R+VV Sbjct: 1 MALLDVLHFPDPRLRTVAKKVSNFTPELIDIAQDMIDTMYEENGVGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R +P+V INP+II+ S + QEGCLS+PD AD+ R+ F+TV++ D Sbjct: 61 IDVSD--ERDDPIVLINPEIISQSGE-ECSQEGCLSVPDINADITRAEFVTVKFQDVQGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q I AD LLA C+QHELDHL G LFID+LS K+ I K+ KL + + Sbjct: 118 AQQIEADSLLAVCIQHELDHLIGKLFIDYLSPFKQKRIKTKLEKLQRQNE 167 >gi|153834309|ref|ZP_01986976.1| peptide deformylase [Vibrio harveyi HY01] gi|148869317|gb|EDL68331.1| peptide deformylase [Vibrio harveyi HY01] Length = 172 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K++K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQEKLAKIKRFNE 167 >gi|307728142|ref|YP_003905366.1| peptide deformylase [Burkholderia sp. CCGE1003] gi|307582677|gb|ADN56075.1| peptide deformylase [Burkholderia sp. CCGE1003] Length = 167 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + FINP+I+ S++ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSDA--HDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164 >gi|161506040|ref|YP_001573152.1| peptide deformylase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189083077|sp|A9MN80|DEF_SALAR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|160867387|gb|ABX24010.1| hypothetical protein SARI_04221 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 169 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 115/168 (68%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSE--NRNERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|320154884|ref|YP_004187263.1| peptide deformylase [Vibrio vulnificus MO6-24/O] gi|319930196|gb|ADV85060.1| peptide deformylase [Vibrio vulnificus MO6-24/O] Length = 170 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 112/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + Sbjct: 61 IDISES--RNEPMVLINPEILEKHGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGH 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|293393278|ref|ZP_06637592.1| peptide deformylase [Serratia odorifera DSM 4582] gi|291424188|gb|EFE97403.1| peptide deformylase [Serratia odorifera DSM 4582] Length = 169 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 114/169 (67%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+V+ P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N Sbjct: 61 IDVSET--RDQRLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDYNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L+ Sbjct: 118 SFELAADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKLQ 166 >gi|241766760|ref|ZP_04764590.1| peptide deformylase [Acidovorax delafieldii 2AN] gi|241362866|gb|EER58605.1| peptide deformylase [Acidovorax delafieldii 2AN] Length = 169 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 109/167 (65%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P++ +++ I L+ +ML MY GIGLAA Q+ V R+VV Sbjct: 1 MAILPILCYPDPRLHKVAQPVQAVDARIEALVADMLATMYDAHGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I+ S + V EGCLS+P V+R+A + VR +D + Sbjct: 61 IDVSE--ERNEPLVLINPEIVWASAERHVGDEGCLSVPGIYDGVERAAAVHVRALDAQGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K + Sbjct: 119 SRTIEAEGLLAVCMQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQR 165 >gi|319778670|ref|YP_004129583.1| Peptide deformylase [Taylorella equigenitalis MCE9] gi|317108694|gb|ADU91440.1| Peptide deformylase [Taylorella equigenitalis MCE9] Length = 169 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 111/169 (65%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L+++++ ++ ++ I ++++M E MY+ +G+GLAA Q+ + R+VV Sbjct: 1 MAVLPILKYPDPRLKKIAKDVDVVDESIKKIVEDMAETMYAANGVGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R + +V INP+II S++ +++EGCLS+P +V+R + + V+ +D N Sbjct: 61 IDVSE--ERNDLLVLINPEIIGISEEKVIHEEGCLSVPTIYDNVERFSEVRVKALDQNGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ADGLLA C+QHELDHL G +F++ LS LK++ I K+ K + Sbjct: 119 AFEFKADGLLAICVQHELDHLMGKVFVEKLSALKQNRIKTKLKKAQKEE 167 >gi|325577099|ref|ZP_08147583.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392] gi|325160681|gb|EGC72802.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392] Length = 175 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 112/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N DI ++D+M + MY +GIGLAA Q+ +L R++ Sbjct: 7 MTALNVLIYPDDHLKIVCEPVAEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 66 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N +V INP+I+ + + +EGCLSIP +RA V R +TV+ +D + + Sbjct: 67 IDIE--GDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGK 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 124 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVKYKKQ 171 >gi|121999101|ref|YP_001003888.1| peptide deformylase [Halorhodospira halophila SL1] gi|121590506|gb|ABM63086.1| peptide deformylase [Halorhodospira halophila SL1] Length = 169 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++++PDP LR + P+ +++ + L+D+MLE MY GIGLAA Q+G R+ V Sbjct: 1 MALLDILVYPDPRLRERAEPVAEVDDAVRRLVDDMLETMYEARGIGLAATQVGDRRRVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I+ + + + +EGCLSIP Y DV R+ + R +D +AQ Sbjct: 61 IDVSE--ERDEPLVLINPEILEATGE-ASGEEGCLSIPGYYDDVARATRVRYRALDRDAQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LA CLQHE+DHL+G LFID+LS LKR + K+M K +L Sbjct: 118 PIEGEAEGTLAVCLQHEIDHLDGRLFIDYLSELKRKRVRKRMEKRERL 165 >gi|271502213|ref|YP_003335239.1| peptide deformylase [Dickeya dadantii Ech586] gi|270345768|gb|ACZ78533.1| peptide deformylase [Dickeya dadantii Ech586] Length = 169 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 111/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N++I ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRTQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+++ S D + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSE--ERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + Sbjct: 118 PFELDADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLARQ 165 >gi|117928486|ref|YP_873037.1| peptide deformylase [Acidothermus cellulolyticus 11B] gi|158512367|sp|A0LUE1|DEF_ACIC1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|117648949|gb|ABK53051.1| peptide deformylase [Acidothermus cellulolyticus 11B] Length = 180 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ LI +++E M G+GLAA QIGV R+ V Sbjct: 1 MAVRPIRLFGDPVLRTPAEPVTDFDKELRVLIKDLIETMQDAPGVGLAAPQIGVSLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ +NP + S++ EGCLS+P +KR+ + + + Sbjct: 61 YDVDGVVG-----HLVNPSLD-LSEEQQDGDEGCLSLPGLSYPLKRAKRAVAKGFNEFGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I+ LLA C+QHE DHL+G+LFID L +R + + + + Sbjct: 115 PVILEGSDLLARCVQHETDHLDGVLFIDRLDPEQRKLAMRAIREAEW 161 >gi|16762876|ref|NP_458493.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144363|ref|NP_807705.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161458|ref|ZP_03347168.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418738|ref|ZP_03351804.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213584235|ref|ZP_03366061.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650879|ref|ZP_03380932.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824191|ref|ZP_06543786.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|23396544|sp|Q8Z1W9|DEF_SALTI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|25303718|pir||AB1010 formylmethionine deformylase (EC 3.5.1.31) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505183|emb|CAD09179.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140001|gb|AAO71565.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 169 Score = 210 bits (535), Expect = 5e-53, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 115/168 (68%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|34499720|ref|NP_903935.1| peptide deformylase [Chromobacterium violaceum ATCC 12472] gi|39930829|sp|Q7NQ75|DEF_CHRVO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|34105571|gb|AAQ61925.1| Polypeptide deformylase [Chromobacterium violaceum ATCC 12472] Length = 167 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E ++ + ID+M E MY GIGLAA Q+ RLVV Sbjct: 1 MALLNILHYPDERLHTVAKPVEVFDAALQQQIDDMFETMYEAKGIGLAATQVDYHRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + R VFINP+I+ + VY+EGCLS+P V R+ + V+ D + + Sbjct: 61 MDISE--ERDERRVFINPEIVEKDGET-VYEEGCLSVPGIYDKVTRAERVKVKAQDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHLNG++F++ LS++K+ I K+ K + Sbjct: 118 PFELEADGLLAICIQHELDHLNGVVFVERLSQMKQQRIKTKLKKREKQ 165 >gi|254851611|ref|ZP_05240961.1| peptide deformylase 2 [Vibrio cholerae MO10] gi|254847316|gb|EET25730.1| peptide deformylase 2 [Vibrio cholerae MO10] Length = 190 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 82 IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188 >gi|27364480|ref|NP_760008.1| peptide deformylase [Vibrio vulnificus CMCP6] gi|31076651|sp|Q8DDE3|DEF1_VIBVU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|27360599|gb|AAO09535.1| peptide deformylase [Vibrio vulnificus CMCP6] Length = 170 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 112/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + Sbjct: 61 IDISES--RNEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGH 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|149910328|ref|ZP_01898971.1| peptide deformylase [Moritella sp. PE36] gi|149806576|gb|EDM66544.1| peptide deformylase [Moritella sp. PE36] Length = 167 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD L+++++P+++I +ID+MLE MY+ +GIGLAAVQ+ +L R+VV Sbjct: 1 MAILEVLHFPDDRLKKIAQPVQEITPATQIIIDDMLETMYAEEGIGLAAVQVNILQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ R P++ INP + + + +EGCLS+P+ RA V R+ +TV +D + Sbjct: 61 IDVSGT--RGEPLILINPVLTNKCGETGI-EEGCLSVPESRAFVPRAESVTVTALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA CLQHE+DHLNG LFID+LS LK+ I KK+ KL + Sbjct: 118 EFTLEAHDLLAICLQHEVDHLNGKLFIDYLSPLKQQRIRKKLEKLARQ 165 >gi|89902619|ref|YP_525090.1| peptide deformylase [Rhodoferax ferrireducens T118] gi|89347356|gb|ABD71559.1| peptide deformylase [Rhodoferax ferrireducens T118] Length = 169 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L V++P+ ++ + LI +MLE MY GIGLAA QI V RL+V Sbjct: 1 MALLPILCYPDPKLHTVAKPVSTVDVRVQTLIVDMLETMYEAKGIGLAATQINVHERLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + R P+V INP+++ S + + +EGCLS+P V+R +TV +D Q Sbjct: 61 VDVSE--ERDAPLVLINPQLVWSSAETHLNEEGCLSVPGIYDGVERFDAVTVTALDGQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++I A+GLLA C+QHE+DHL G +F+++LS LKR+ I KKM K + Sbjct: 119 SRLIEAEGLLAVCIQHEMDHLQGKVFVEYLSPLKRNRIKKKMLKSQREE 167 >gi|294138834|ref|YP_003554812.1| polypeptide deformylase [Shewanella violacea DSS12] gi|293325303|dbj|BAJ00034.1| polypeptide deformylase [Shewanella violacea DSS12] Length = 170 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P+ + N+ + IDNM E MY GIGLAA Q+ +L++ Sbjct: 1 MSLLKVLRFPDERLRTFAKPVTEFNTGLQTQIDNMFETMYEEKGIGLAATQVDYHRQLII 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFIN +I+ S FS +EGCLS+P AD++R+ +T++ +D + Sbjct: 61 MDLQDEEER--PKVFINLEIVASSGHFS-NEEGCLSVPGIYADIERAEHVTIKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA CLQHELDHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFTLEADGLLAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARLE 166 >gi|262191293|ref|ZP_06049487.1| peptide deformylase [Vibrio cholerae CT 5369-93] gi|262032831|gb|EEY51375.1| peptide deformylase [Vibrio cholerae CT 5369-93] Length = 190 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRVVV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 82 IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188 >gi|297180810|gb|ADI17016.1| N-formylmethionyl-tRNA deformylase [uncultured Vibrionales bacterium HF0010_22E23] Length = 170 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 75/167 (44%), Positives = 109/167 (65%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I ++D+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDERLRTVAKPVESVTPEIQKIVDDMLETMYEENGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P +A V R+A +TV+ +D + Sbjct: 61 IDVSET--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGSQALVPRAAEVTVKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 EYQFDADDLLAICVQHELDHLMGKLFVDYLSPLKRQRIKQKLEKIKR 164 >gi|229530168|ref|ZP_04419557.1| peptide deformylase [Vibrio cholerae 12129(1)] gi|229332301|gb|EEN97788.1| peptide deformylase [Vibrio cholerae 12129(1)] Length = 194 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 115/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 26 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 86 IDISE--NRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 142 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192 >gi|162452083|ref|YP_001614450.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56'] gi|161162665|emb|CAN93970.1| Polypeptide deformylase [Sorangium cellulosum 'So ce 56'] Length = 170 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 68/164 (41%), Positives = 102/164 (62%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP LR+ ++P+ +I+ +I LID+M E MY+ G+GLAA QIG +R+ + Sbjct: 1 MAIRTILHYPDPRLRQKAQPVGEISPEITKLIDDMAETMYAAPGVGLAATQIGEPHRVFL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ N +VFINP+I+ EGCLS P D+KR+ +TVR + Sbjct: 61 VDIAADDEPSNLLVFINPEIVRQEGQL-TGPEGCLSFPGISEDIKRAERVTVRARGRDGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I ADGLLA +QHELDHL+G+L ID + LK+ ++ +KM K Sbjct: 120 TFEIAADGLLAVAIQHELDHLDGVLMIDRMGTLKKRIVQRKMQK 163 >gi|251793801|ref|YP_003008533.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700] gi|247535200|gb|ACS98446.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700] Length = 170 Score = 209 bits (534), Expect = 7e-53, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+P+ L+ + P+ ++N D +ID+M + MY +GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPEDHLKVICDPVTEVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N +V INP+I+ + + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDIE--GDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHE+DHLNGILF+D+LS LKR I +K+ K+ + R+ Sbjct: 118 EFTLKADRLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKVKKQRE 167 >gi|71064611|ref|YP_263338.1| peptide deformylase [Psychrobacter arcticus 273-4] gi|123734488|sp|Q4FVQ4|DEF_PSYA2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71037596|gb|AAZ17904.1| peptide deformylase [Psychrobacter arcticus 273-4] Length = 184 Score = 209 bits (534), Expect = 7e-53, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 112/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR ++ P++++ ++I LI +M+E MY +GIGLAA Q+ +L+V Sbjct: 1 MALLPILSYPDPRLRMIATPVKEVTAEIKTLITDMIETMYDAEGIGLAASQVDHHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + +P VFINPK+ ++ Y+EGCLS+PD V+R + + +D N Sbjct: 61 MDLSE--DKDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEAIDQNGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +GLLA C+QHE+DHLNG++F+D+LSRLK+ K+ K++++R+ Sbjct: 119 AIDEEVEGLLAVCIQHEIDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168 >gi|121606766|ref|YP_984095.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] gi|120595735|gb|ABM39174.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] Length = 173 Score = 209 bits (534), Expect = 7e-53, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 105/170 (61%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L V++P+ ++ + L D M MY+ +GIGLAA Q+ V RLVV Sbjct: 1 MTPLTILRYPDPRLHTVAKPVAAFDARLRQLADAMFHTMYAAEGIGLAATQVDVHERLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I+ S + + EGCLS+P V+R+ + V +D N Q Sbjct: 61 IDVSE--GRNQPLVLINPEIVWASAETRIGDEGCLSVPGIYDGVERALAVKVAALDLNGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q+ A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K + + Sbjct: 119 KQLHEAEGMLAVCIQHEMDHLIGKVFVEYLSPLKRNRIKTKLIKQKKDEE 168 >gi|194291227|ref|YP_002007134.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424] gi|193225062|emb|CAQ71073.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424] Length = 168 Score = 209 bits (534), Expect = 7e-53, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L V++P+ ++ I L+ +M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD+ V++EGCLS+P+ V+R + VR ++ + Sbjct: 61 IDVSET--RDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G +F+++LS LK + I K+ K + R Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERAR 167 >gi|94266527|ref|ZP_01290215.1| Peptide deformylase [delta proteobacterium MLMS-1] gi|93452856|gb|EAT03376.1| Peptide deformylase [delta proteobacterium MLMS-1] Length = 259 Score = 209 bits (534), Expect = 7e-53, Method: Composition-based stats. Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 19/183 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP+ L+ + P+ + + + L+ +M+ M+ G+GLAA Q+GV ++VV Sbjct: 72 MAIRPVVKFPEASLKSKAAPVTEFDDSLRALVADMIATMHDAPGVGLAAPQVGVPLQVVV 131 Query: 61 I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 I D +D A +NP +V INP+++ + V +EGCLS+ DY + Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 VKR A + V +D + Q I A+G A LQHE+DHL G LFID LS LKR + KK+ Sbjct: 191 KVKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250 Query: 163 SKL 165 K+ Sbjct: 251 KKI 253 >gi|88801027|ref|ZP_01116576.1| peptide deformylase [Reinekea sp. MED297] gi|88776230|gb|EAR07456.1| peptide deformylase [Reinekea sp. MED297] Length = 169 Score = 209 bits (534), Expect = 7e-53, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 104/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V++PIEK++ +I L D+MLE MY GIGLAA Q+ RL+V Sbjct: 1 MALLDILEFPDPRLRTVAKPIEKVDGEIQKLADDMLETMYDAPGIGLAASQVDRHIRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + +P + INP+ +D YQEGCLS+P Y V RS I+VR ++ + Sbjct: 61 VDVSE--DQNDPHILINPEYDRLGEDIE-YQEGCLSVPGYYEKVSRSDRISVRALNRDGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A L A C+QHE+DHL+G LF+D+LS LKR I KK+ K + Sbjct: 118 AIEFEATDLFAICIQHEIDHLDGKLFVDYLSNLKRTRIRKKLEKQHKQ 165 >gi|269962644|ref|ZP_06176989.1| peptide deformylase [Vibrio harveyi 1DA3] gi|269832567|gb|EEZ86681.1| peptide deformylase [Vibrio harveyi 1DA3] Length = 193 Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 112/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ V R+VV Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHKRIVV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 82 IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 139 EYTFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 188 >gi|260771088|ref|ZP_05880016.1| peptide deformylase [Vibrio furnissii CIP 102972] gi|260613977|gb|EEX39168.1| peptide deformylase [Vibrio furnissii CIP 102972] gi|315178587|gb|ADT85501.1| peptide deformylase [Vibrio furnissii NCTC 11218] Length = 170 Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ V R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP I+ + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 IDISET--RDEPMVLINPVILEKRGEDGI-EEGCLSVPGARALVARAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + D Sbjct: 118 EYTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFND 167 >gi|16766695|ref|NP_462310.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415326|ref|YP_152401.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181912|ref|YP_218329.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616432|ref|YP_001590397.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167554203|ref|ZP_02347944.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167995181|ref|ZP_02576271.1| peptide deformylase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168239761|ref|ZP_02664819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245233|ref|ZP_02670165.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264713|ref|ZP_02686686.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168468037|ref|ZP_02701874.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823236|ref|ZP_02835236.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444564|ref|YP_002042658.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451296|ref|YP_002047431.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734454|ref|YP_002116350.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248664|ref|YP_002148327.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265509|ref|ZP_03165583.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364256|ref|YP_002143893.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245506|ref|YP_002217370.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388386|ref|ZP_03214998.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205354966|ref|YP_002228767.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858648|ref|YP_002245299.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913879|ref|ZP_04657716.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|23396546|sp|Q8ZLM7|DEF_SALTY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|75505525|sp|Q57J64|DEF_SALCH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81677960|sp|Q5PIT8|DEF_SALPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083078|sp|A9N8B1|DEF_SALPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690058|sp|B5F7R3|DEF_SALA4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690317|sp|B5FJI2|DEF_SALDC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690438|sp|B5R1E3|DEF_SALEP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690545|sp|B5RH49|DEF_SALG2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690672|sp|B4TJX7|DEF_SALHS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690738|sp|B5BGV3|DEF_SALPK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238693518|sp|B4SUQ8|DEF_SALNS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238693718|sp|B4TXB0|DEF_SALSV RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|16421962|gb|AAL22269.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129583|gb|AAV79089.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129545|gb|AAX67248.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365796|gb|ABX69564.1| hypothetical protein SPAB_04247 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403227|gb|ACF63449.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409600|gb|ACF69819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709956|gb|ACF89177.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195628902|gb|EDX48312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095733|emb|CAR61303.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212367|gb|ACH49764.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243764|gb|EDY26384.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287582|gb|EDY26974.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940022|gb|ACH77355.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605484|gb|EDZ04029.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205274747|emb|CAR39803.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321541|gb|EDZ09380.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327093|gb|EDZ13857.1| peptide deformylase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205336019|gb|EDZ22783.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340500|gb|EDZ27264.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205346889|gb|EDZ33520.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710451|emb|CAR34809.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248563|emb|CBG26401.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995615|gb|ACY90500.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159949|emb|CBW19468.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914429|dbj|BAJ38403.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087852|emb|CBY97615.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226458|gb|EFX51508.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615053|gb|EFY11977.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617340|gb|EFY14241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625562|gb|EFY22387.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626404|gb|EFY23213.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632084|gb|EFY28837.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635037|gb|EFY31760.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643262|gb|EFY39829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646654|gb|EFY43161.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650000|gb|EFY46419.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652717|gb|EFY49057.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659526|gb|EFY55770.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665532|gb|EFY61719.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670426|gb|EFY66565.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670499|gb|EFY66633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675075|gb|EFY71158.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681612|gb|EFY77641.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685956|gb|EFY81945.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716398|gb|EFZ07969.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131764|gb|ADX19194.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195826|gb|EFZ80999.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196418|gb|EFZ81569.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202703|gb|EFZ87742.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207308|gb|EFZ92258.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211256|gb|EFZ96101.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216035|gb|EGA00766.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223474|gb|EGA07802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226796|gb|EGA10986.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231842|gb|EGA15952.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233205|gb|EGA17300.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237272|gb|EGA21337.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245507|gb|EGA29506.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249013|gb|EGA32935.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250636|gb|EGA34517.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256865|gb|EGA40579.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263014|gb|EGA46561.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266014|gb|EGA49509.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272771|gb|EGA56174.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625151|gb|EGE31496.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630115|gb|EGE36458.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990258|gb|AEF09241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 169 Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 115/168 (68%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|194367357|ref|YP_002029967.1| peptide deformylase [Stenotrophomonas maltophilia R551-3] gi|238693439|sp|B4SKH7|DEF_STRM5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194350161|gb|ACF53284.1| peptide deformylase [Stenotrophomonas maltophilia R551-3] Length = 170 Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 108/170 (63%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + I E L+DNM + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAALIDAAEVTTPAFQELVDNMFQTMYDAPGIGLAATQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + P VFINP+I+ VYQEGCLS+P ADV R+ ITV+Y+D Sbjct: 61 FMVIDVSE--EKNEPHVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q Q + A +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K + Sbjct: 118 DGQQQELEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167 >gi|209515834|ref|ZP_03264696.1| peptide deformylase [Burkholderia sp. H160] gi|209503682|gb|EEA03676.1| peptide deformylase [Burkholderia sp. H160] Length = 167 Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 102/166 (61%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ ++N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVTEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I+ SD+ +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSET--HDELLALINPEIVWSSDERKFSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164 >gi|113869635|ref|YP_728124.1| peptide deformylase [Ralstonia eutropha H16] gi|113528411|emb|CAJ94756.1| formylmethionine deformylase [Ralstonia eutropha H16] Length = 168 Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L V++P+ ++ I L+ +M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD+ V++EGCLS+P+ V+R + VR ++ + Sbjct: 61 IDVSET--RDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G +F+++LS LK + I K+ K + R Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERTR 167 >gi|94268712|ref|ZP_01291263.1| Peptide deformylase [delta proteobacterium MLMS-1] gi|93451495|gb|EAT02324.1| Peptide deformylase [delta proteobacterium MLMS-1] Length = 259 Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 19/183 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP+ L+ +RP+ + + + L+ +M+ M+ G+GLAA Q+GV ++VV Sbjct: 72 MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131 Query: 61 I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 I D +D A +NP +V INP+++ + V +EGCLS+ DY + Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 VKR + V +D + Q I A+G A LQHE+DHL G LFID LS LKR + KK+ Sbjct: 191 KVKRYTRVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250 Query: 163 SKL 165 K+ Sbjct: 251 KKI 253 >gi|229508331|ref|ZP_04397835.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229508830|ref|ZP_04398321.1| peptide deformylase [Vibrio cholerae B33] gi|229515915|ref|ZP_04405372.1| peptide deformylase [Vibrio cholerae TMA 21] gi|229517101|ref|ZP_04406547.1| peptide deformylase [Vibrio cholerae RC9] gi|229520217|ref|ZP_04409644.1| peptide deformylase [Vibrio cholerae TM 11079-80] gi|229606606|ref|YP_002877254.1| peptide deformylase [Vibrio cholerae MJ-1236] gi|229342811|gb|EEO07802.1| peptide deformylase [Vibrio cholerae TM 11079-80] gi|229346164|gb|EEO11136.1| peptide deformylase [Vibrio cholerae RC9] gi|229347015|gb|EEO11977.1| peptide deformylase [Vibrio cholerae TMA 21] gi|229354105|gb|EEO19037.1| peptide deformylase [Vibrio cholerae B33] gi|229354604|gb|EEO19526.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229369261|gb|ACQ59684.1| peptide deformylase [Vibrio cholerae MJ-1236] Length = 194 Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 26 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 86 IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 142 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192 >gi|269140540|ref|YP_003297241.1| peptide deformylase [Edwardsiella tarda EIB202] gi|267986201|gb|ACY86030.1| peptide deformylase [Edwardsiella tarda EIB202] gi|304560325|gb|ADM42989.1| Peptide deformylase [Edwardsiella tarda FL6-60] Length = 171 Score = 209 bits (534), Expect = 9e-53, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 111/169 (65%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ +I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ + + +EGCLS+P+ RA V R+ I VR +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLQHDGEAGI-EEGCLSVPEQRALVTRAESIKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGLLA C+QHE+DHL G LFID+LS LKR I +K+ KL + + Sbjct: 118 PFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166 >gi|323496960|ref|ZP_08101988.1| peptide deformylase [Vibrio sinaloensis DSM 21326] gi|323318034|gb|EGA71017.1| peptide deformylase [Vibrio sinaloensis DSM 21326] Length = 173 Score = 209 bits (534), Expect = 9e-53, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|327482957|gb|AEA77364.1| Peptide deformylase [Vibrio cholerae LMA3894-4] Length = 169 Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 115/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 61 IDISE--NRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 118 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167 >gi|94971313|ref|YP_593361.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] gi|94553363|gb|ABF43287.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] Length = 170 Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V DP+L R + + + + + L+++M E MY G+GLAA QIG+ R+ V+ Sbjct: 1 MTYPIVKLGDPVLERPAAAVTEFDDGLKKLVEDMFESMYDAHGVGLAAPQIGIGKRIAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ +V INP+II +D QEGCLSIPD+R V R+ +TV+ D + Sbjct: 61 DVTFKEDPNAKLVLINPEII-LTDGRQTSQEGCLSIPDFREKVTRARRVTVKAQDLTGKW 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LLA HE DHLNG L+I H+S LKRD+I +K+ KL++ + Sbjct: 120 FEHTGEDLLARAFLHETDHLNGKLYISHVSALKRDLIKRKVKKLIKAGE 168 >gi|329118894|ref|ZP_08247589.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200] gi|327464922|gb|EGF11212.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200] Length = 167 Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 104/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+EKI++ I LI +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEKIDARIKTLIADMFETMYEARGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I + + Y+EGCLS+P V R+ +TV ++ N + Sbjct: 61 MDLSE--ERNEPRVFINPVITHKNGET-TYEEGCLSVPGIYDTVTRAETVTVEALNENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIRTKLKKRQRQ 165 >gi|168234463|ref|ZP_02659521.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472649|ref|ZP_03078633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194459013|gb|EDX47852.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331619|gb|EDZ18383.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 169 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 115/168 (68%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 PFELEANGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|156972726|ref|YP_001443633.1| peptide deformylase [Vibrio harveyi ATCC BAA-1116] gi|166198526|sp|A7N121|DEF_VIBHB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|156524320|gb|ABU69406.1| hypothetical protein VIBHAR_00391 [Vibrio harveyi ATCC BAA-1116] Length = 172 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 112/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|283458224|ref|YP_003362842.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] gi|283134257|dbj|BAI65022.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] Length = 248 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 9/171 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+VI +P+L R + P+ + N ++ L+ +M E M +++G+GLAA QIGV R+ Sbjct: 60 AIRPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTY 119 Query: 62 DLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +++ INP KI T D +EGCLS P Y +KR+ ++TV +D Sbjct: 120 KMENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLD 179 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A G A C+QHE DHL+G L+++ L++ T KM K+V+ Sbjct: 180 EHGNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 226 >gi|285019618|ref|YP_003377329.1| peptide deformylase [Xanthomonas albilineans GPE PC73] gi|283474836|emb|CBA17335.1| putative peptide deformylase protein [Xanthomonas albilineans] Length = 170 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M ++ FPD LR + P++ + L+D+M + MY+ GIGLAA Q+ V R Sbjct: 1 MALLTILEFPDSRLRTKAEPVDPAEVASVAFQRLLDDMFDTMYAAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + P VF+NP+I+ + V+QEGCLS+P ADV RS ITVRY+D Sbjct: 61 FMVIDVSE--EKNAPHVFVNPQIVQREGE-QVHQEGCLSVPGIYADVTRSESITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q + DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK+ K + Sbjct: 118 QGQSQELTTDGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLVKARK 167 >gi|262273080|ref|ZP_06050897.1| peptide deformylase [Grimontia hollisae CIP 101886] gi|262222836|gb|EEY74144.1| peptide deformylase [Grimontia hollisae CIP 101886] Length = 170 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 75/167 (44%), Positives = 109/167 (65%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I ++D+MLE MY DGIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVESVTPEIQKIVDDMLETMYQEDGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R++ +TV+ +D + Sbjct: 61 IDISET--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRASEVTVKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 AD LLA C+QHELDHL G LF+D+LS LK+ I +K+ K+ + Sbjct: 118 EYQFEADDLLAICVQHELDHLEGKLFVDYLSPLKQQRIKQKLEKIKR 164 >gi|212709012|ref|ZP_03317140.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM 30120] gi|212688378|gb|EEB47906.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM 30120] Length = 173 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 110/169 (65%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR V++P+EK+++ I +ID+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLNVLHYPDERLRTVAKPVEKVDASIQRIIDDMFDTMYDEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+++ + + +EGCLS+P+ V R+ + VR ++ N Sbjct: 61 IDVSES--RNERLVLINPELLNKEGETGI-EEGCLSVPEQHGFVPRAEKVKVRALNYNGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +LR Sbjct: 118 AFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166 >gi|300024230|ref|YP_003756841.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888] gi|299526051|gb|ADJ24520.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888] Length = 171 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 79/168 (47%), Positives = 118/168 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP+LR++S P+E+++ ++ L+D+MLE MY GIGLAAVQ+GVL R++V Sbjct: 1 MAILPIITIPDPVLRKISDPVERVDDAVVKLMDDMLETMYDAPGIGLAAVQVGVLKRVLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + NP+ NP+++ +++EGCLSIPD +++R A +TVRY+D + + Sbjct: 61 VDAAEDGAPHNPIAMANPELVALGSTTRLHEEGCLSIPDVHVEIERPASVTVRYIDRHGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + A+GLLAT +QHELDHL+G L ID LSRLKRDM+ +K K V+ Sbjct: 121 EQELAAEGLLATAVQHELDHLDGQLIIDFLSRLKRDMVIRKFKKQVRE 168 >gi|288575787|ref|ZP_05977581.2| peptide deformylase [Neisseria mucosa ATCC 25996] gi|288566988|gb|EFC88548.1| peptide deformylase [Neisseria mucosa ATCC 25996] Length = 193 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+EK++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 27 MALLNILQYPDERLHTVAKPVEKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VF+NP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 87 MDLTE--DRSEPRVFVNPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 143 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 144 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190 >gi|114777061|ref|ZP_01452081.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1] gi|114552582|gb|EAU55042.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1] Length = 180 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 102/179 (56%), Gaps = 12/179 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++I PD L +VSRP+E ++ ++ LI +M + MY G+GLAA Q+G L R+ Sbjct: 1 MAVREILIHPDDRLVQVSRPVEFPLSDEVKELIRDMADTMYDAPGVGLAAPQVGELLRIA 60 Query: 60 VIDL-----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 V D + V+INP+ + SD+ ++EGCLS+P+ DV R A Sbjct: 61 VTDTVWRDKEVRHDGDLPGGHRELKVWINPEFLWKSDEMETWEEGCLSVPETWGDVSRPA 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +R+ D + DG A LQHE DHL+G LFID+LS LKR MITKKM KL + Sbjct: 121 ALRLRWFDEHGVQHEQDFDGFQAVALQHEFDHLDGKLFIDYLSPLKRRMITKKMKKLYK 179 >gi|297581920|ref|ZP_06943840.1| peptide deformylase [Vibrio cholerae RC385] gi|297533787|gb|EFH72628.1| peptide deformylase [Vibrio cholerae RC385] Length = 190 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++DNMLE MY+ +GIGLAA Q+ + R+VV Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDNMLETMYAEEGIGLAATQVDIHQRIVV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 82 IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188 >gi|15640078|ref|NP_229705.1| peptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587283|ref|ZP_01677056.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121727904|ref|ZP_01680963.1| polypeptide deformylase [Vibrio cholerae V52] gi|147673376|ref|YP_001218366.1| peptide deformylase [Vibrio cholerae O395] gi|153212941|ref|ZP_01948535.1| polypeptide deformylase [Vibrio cholerae 1587] gi|153802782|ref|ZP_01957368.1| polypeptide deformylase [Vibrio cholerae MZO-3] gi|153817595|ref|ZP_01970262.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|153821925|ref|ZP_01974592.1| polypeptide deformylase [Vibrio cholerae B33] gi|153826444|ref|ZP_01979111.1| polypeptide deformylase [Vibrio cholerae MZO-2] gi|153830125|ref|ZP_01982792.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|227080283|ref|YP_002808834.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|254291093|ref|ZP_04961890.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|255746772|ref|ZP_05420718.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262155853|ref|ZP_06028975.1| peptide deformylase [Vibrio cholerae INDRE 91/1] gi|262166896|ref|ZP_06034617.1| peptide deformylase [Vibrio cholerae RC27] gi|17432954|sp|Q9KVU3|DEF1_VIBCH RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|9654439|gb|AAF93224.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548529|gb|EAX58585.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121629848|gb|EAX62263.1| polypeptide deformylase [Vibrio cholerae V52] gi|124116167|gb|EAY34987.1| polypeptide deformylase [Vibrio cholerae 1587] gi|124121695|gb|EAY40438.1| polypeptide deformylase [Vibrio cholerae MZO-3] gi|126511863|gb|EAZ74457.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|126520545|gb|EAZ77768.1| polypeptide deformylase [Vibrio cholerae B33] gi|146315259|gb|ABQ19798.1| polypeptide deformylase [Vibrio cholerae O395] gi|148874389|gb|EDL72524.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|149739830|gb|EDM54025.1| polypeptide deformylase [Vibrio cholerae MZO-2] gi|150422938|gb|EDN14888.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|227008171|gb|ACP04383.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|227011951|gb|ACP08161.1| polypeptide deformylase [Vibrio cholerae O395] gi|255735529|gb|EET90928.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262024667|gb|EEY43347.1| peptide deformylase [Vibrio cholerae RC27] gi|262030305|gb|EEY48947.1| peptide deformylase [Vibrio cholerae INDRE 91/1] Length = 169 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 61 IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 118 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167 >gi|295675125|ref|YP_003603649.1| peptide deformylase [Burkholderia sp. CCGE1002] gi|295434968|gb|ADG14138.1| peptide deformylase [Burkholderia sp. CCGE1002] Length = 167 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+I+ SD + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSET--HDELLAFINPEIVWSSDQRKLSEEGCLSVPGIYDNVERAEKVRVRALNQKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164 >gi|188492250|ref|ZP_02999520.1| peptide deformylase [Escherichia coli 53638] gi|291284645|ref|YP_003501463.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615] gi|188487449|gb|EDU62552.1| peptide deformylase [Escherichia coli 53638] gi|209757364|gb|ACI76994.1| peptide deformylase [Escherichia coli] gi|290764518|gb|ADD58479.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615] gi|320661377|gb|EFX28792.1| peptide deformylase [Escherichia coli O55:H7 str. USDA 5905] Length = 169 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 118/170 (69%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+D Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167 >gi|315497920|ref|YP_004086724.1| peptide deformylase [Asticcacaulis excentricus CB 48] gi|315415932|gb|ADU12573.1| peptide deformylase [Asticcacaulis excentricus CB 48] Length = 178 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 76/167 (45%), Positives = 111/167 (66%), Gaps = 9/167 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ P P+L++VS+P+E + ++ L+D+MLE MY GIGLAA+QIG R++ Sbjct: 1 MAIRDIITVPHPLLKQVSKPVEGGVTDELRALMDDMLETMYDAPGIGLAAIQIGEPIRVI 60 Query: 60 VIDL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 V+DL +D K P F+NP+II S++ S Y EGCLS+P+ +VKR A + Sbjct: 61 VMDLQERPDDLPEDAPAPKQPRYFVNPEIIWASEELSTYDEGCLSVPEVYDEVKRPARVR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 ++Y++ + I DGL ATC+QHE+DHLNG+LFIDHLS+LKRD Sbjct: 121 LKYLNYQGEEVIEECDGLYATCIQHEMDHLNGVLFIDHLSKLKRDRA 167 >gi|307132806|ref|YP_003884822.1| peptide deformylase [Dickeya dadantii 3937] gi|306530335|gb|ADN00266.1| peptide deformylase [Dickeya dadantii 3937] Length = 169 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 112/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N++I ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIKAQPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+++ S D + +EGCLSIP+ RA V R+ ++VR +D + Sbjct: 61 IDVSE--ERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAERVSVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLARQ 165 >gi|94676503|ref|YP_588858.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123384127|sp|Q1LT56|DEF_BAUCH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|94219653|gb|ABF13812.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 167 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 108/167 (64%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD LR++S+P+ KIN+ I ++ +M + MY +GIGLAA Q+ + ++V Sbjct: 1 MSLLPILYYPDHRLRQISKPVNKINNSIYRIVYDMFDTMYHKNGIGLAAPQVNINLNIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ +V INP+++ S + ++ EGCLSIP+ V R+ I VR +D N Sbjct: 61 IDVSENKEQR--LVLINPELLAKSGETGIH-EGCLSIPEQHGFVPRAKNIKVRALDLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + L A C+QHE+DHL G LFID+LS LKR + KKM +L++ Sbjct: 118 SFNLETNDLQAICIQHEMDHLVGKLFIDYLSPLKRQRLLKKMKQLIR 164 >gi|242237892|ref|YP_002986073.1| peptide deformylase [Dickeya dadantii Ech703] gi|242129949|gb|ACS84251.1| peptide deformylase [Dickeya dadantii Ech703] Length = 170 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRITAKPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVNIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+++ S D + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--ERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAERVKIRALDKDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + DGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + + Sbjct: 118 PFELETDGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLDRQNN 167 >gi|319785850|ref|YP_004145325.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] gi|317464362|gb|ADV26094.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] Length = 170 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 107/170 (62%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + +E L+D+M E MY GIGLAA Q+ R Sbjct: 1 MALLPILEFPDPRLRTKAAQVEPAQVTTPGFQRLVDDMFETMYEAPGIGLAATQVDQHLR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID + + PMVFINP+I+ S VYQEGCLS+P ADV R+ I VR++D Sbjct: 61 FMVIDTSE--DKSAPMVFINPEIV-QSQGGRVYQEGCLSVPGIYADVTRADTIVVRFLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q + ADGLLATC+QHE+DHL G LF+D+LS LKR+M+ KK++K + Sbjct: 118 EGRQQELAADGLLATCIQHEMDHLEGKLFVDYLSPLKREMVRKKLAKARR 167 >gi|117923458|ref|YP_864075.1| peptide deformylase [Magnetococcus sp. MC-1] gi|117607214|gb|ABK42669.1| peptide deformylase [Magnetococcus sp. MC-1] Length = 173 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 4/160 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PDP+L++ + P+ +++ I L+ +MLE MY+ GIGLAA Q+GV R++V Sbjct: 1 MAILPIVTAPDPVLKKRAEPVVAVDASIQQLMRDMLETMYAAPGIGLAAPQVGVSKRVIV 60 Query: 61 IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +D+ + A P NP+II + ++EGCLS+P+ V R + VR ++ Sbjct: 61 VDVTYSEAAAQDGEPYCLANPEIIAAEGEI-TWEEGCLSVPESYGKVDRKEHVVVRGLNA 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + + A GL A CLQHE+DHL+G LFIDHLS LKR M Sbjct: 120 QGELVTLEAHGLFAVCLQHEIDHLDGTLFIDHLSSLKRTM 159 >gi|312115223|ref|YP_004012819.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100] gi|311220352|gb|ADP71720.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100] Length = 176 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 83/170 (48%), Positives = 114/170 (67%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD ILR S+ +E ++ ++ L ++MLE MY+ GIGLAAVQIGVL RL+V Sbjct: 1 MAIRSIITIPDAILRETSKTVETVDDEVRALANDMLETMYAAPGIGLAAVQIGVLRRLIV 60 Query: 61 IDLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D Q + KNP+V INP+I+T D V++EGCLSIP A+V+R A + VRY+D Sbjct: 61 MDAQKGDEKGKNPVVLINPEILTHGDTPRVHEEGCLSIPQMYAEVERPALVRVRYVDAEG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q L AT +QHE+DHL G LFIDHLSRLKR ++ +K KL + R Sbjct: 121 KQQERDFSDLEATLVQHEIDHLEGRLFIDHLSRLKRTLLIRKYHKLQRER 170 >gi|303245828|ref|ZP_07332110.1| peptide deformylase [Desulfovibrio fructosovorans JJ] gi|302492611|gb|EFL52479.1| peptide deformylase [Desulfovibrio fructosovorans JJ] Length = 177 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 104/168 (61%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P PIL S P+ + +I L D+M E MY+ G+GLAA Q+G RLVVI Sbjct: 1 MLLEILKYPHPILAAKSEPVPGVTPEIRQLADDMAETMYANQGVGLAAPQVGRSIRLVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL R+ + +NP I + EGCLS+ DYRA+VKR+A +TV D + Sbjct: 61 DLSGPDKREERINLVNPVITKAEGE-QEDDEGCLSVRDYRANVKRAATVTVCATDLDGNP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA CLQHE+DHL+G+LFIDH+SRLKR M K++ + + + Sbjct: 120 FCLEADGLLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWAKQK 167 >gi|163803316|ref|ZP_02197194.1| peptide deformylase [Vibrio sp. AND4] gi|159172886|gb|EDP57725.1| peptide deformylase [Vibrio sp. AND4] Length = 172 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 112/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDVSET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EYTFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|332525408|ref|ZP_08401568.1| peptide deformylase [Rubrivivax benzoatilyticus JA2] gi|332108677|gb|EGJ09901.1| peptide deformylase [Rubrivivax benzoatilyticus JA2] Length = 172 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ +PDP L +V++P+ +++ + L+ +MLE MY ++G+GLAA Q+ V RL V Sbjct: 1 MAQLPILRYPDPRLHKVAKPVAAVDARVKQLVADMLETMYESEGVGLAATQVDVHERLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D PMVF+NP+I+ S++ +++EGCLS+P V R+A +TVR +D Sbjct: 61 MDTSP--EHDQPMVFVNPQIVARSEELVIWEEGCLSVPQVWDKVTRNARVTVRALDREGA 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I DGL A C QHE+DHL+G +F+++LS LKR+ I KM+K + Sbjct: 119 EFEIALDGLAAVCAQHEIDHLDGKVFVEYLSLLKRERIKVKMAKRTREE 167 >gi|260775015|ref|ZP_05883915.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] gi|260609105|gb|EEX35264.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] Length = 173 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDERLRTVAKPVEKVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDISET--RDQPMVLINPEILDKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|85060224|ref|YP_455926.1| peptide deformylase [Sodalis glossinidius str. 'morsitans'] gi|123738923|sp|Q2NQQ4|DEF_SODGM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|84780744|dbj|BAE75521.1| polypeptide deformylase [Sodalis glossinidius str. 'morsitans'] Length = 171 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+V++P+ +N I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSLLQVLHYPDERLRKVAKPVVDVNDAIRRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+++ S + + EGCLSIPD R V R+ + V+ +D + Sbjct: 61 IDVSES--RDQRLVMINPELLEKSGETGID-EGCLSIPDQRGFVPRAEKVKVQALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +KM KL ++ Sbjct: 118 SFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKLARM 165 >gi|157148861|ref|YP_001456180.1| peptide deformylase [Citrobacter koseri ATCC BAA-895] gi|166198515|sp|A8AQI1|DEF_CITK8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157086066|gb|ABV15744.1| hypothetical protein CKO_04699 [Citrobacter koseri ATCC BAA-895] Length = 169 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 116/168 (69%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|160872447|ref|ZP_02062579.1| peptide deformylase [Rickettsiella grylli] gi|159121246|gb|EDP46584.1| peptide deformylase [Rickettsiella grylli] Length = 168 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PD LR + I ++ + LID+M E MY+ GIGLAA QI + +L V Sbjct: 1 MAIYPIIQLPDVRLRVPTTSITVFDATLQQLIDDMFETMYAAKGIGLAAPQIAISKKLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + INP I+ + ++ +EGCLS+P R+ ++ ++ +D N + Sbjct: 61 IDVT--NNKSHTLCLINPTIVEKKGE-ALLEEGCLSVPGIYDKAPRALWVKLQALDRNGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I A+GLLA C+QHE+DHLNG LF+DHLS LK+ + KK+ K+ + R Sbjct: 118 PYEIEAEGLLAHCIQHEVDHLNGKLFLDHLSPLKQQLARKKLDKIKKRR 166 >gi|332991529|gb|AEF01584.1| peptide deformylase [Alteromonas sp. SN2] Length = 169 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++N DI L+ +M E M +GIGLAA Q+ ++VV Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDDIKQLVSDMFETMKDENGIGLAATQVDRHVQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ + + P VFINP+I + +EGCLS+P A V+R+ ITV+ ++ N + Sbjct: 61 MNVAE--DQDEPRVFINPEITKKDGST-ISEEGCLSVPGNYAKVERAEEITVKALNENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 118 AFELEADGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165 >gi|261250604|ref|ZP_05943179.1| peptide deformylase [Vibrio orientalis CIP 102891] gi|260939173|gb|EEX95160.1| peptide deformylase [Vibrio orientalis CIP 102891] Length = 172 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|251788004|ref|YP_003002725.1| peptide deformylase [Dickeya zeae Ech1591] gi|247536625|gb|ACT05246.1| peptide deformylase [Dickeya zeae Ech1591] Length = 169 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 111/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N++I ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+++ S D + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSE--ERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + Sbjct: 118 PFELEADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLARQ 165 >gi|297183538|gb|ADI19667.1| N-formylmethionyl-tRNA deformylase [uncultured Alteromonadales bacterium HF4000_16C08] Length = 169 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++N +I L+ +M E M +GIGLAA Q+ ++VV Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + P VFINP+I + +EGCLS+P A V+R+ ITV+ ++ + Sbjct: 61 MDVSE--DQNEPRVFINPEITRKDGST-ISEEGCLSVPGNYAKVERAEAITVKALNEEGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 118 AFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKDARL 165 >gi|37528512|ref|NP_931857.1| peptide deformylase [Photorhabdus luminescens subsp. laumondii TTO1] gi|39930823|sp|Q7MYI2|DEF_PHOLL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|36787950|emb|CAE17067.1| polypeptide deformylase (PDF) (formylmethionine deformylase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 170 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 113/169 (66%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR ++ P+E ++++I +ID+M E MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLHYPDERLRTIATPVETVDAEIRRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + +V INP+++ S + + +EGCLSIP+ RA V R+ + ++ +D N + Sbjct: 61 IDVSETRNER--LVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIKALDYNGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + + Sbjct: 118 PFELQADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLDKQK 166 >gi|320105840|ref|YP_004181430.1| peptide deformylase [Terriglobus saanensis SP1PR4] gi|319924361|gb|ADV81436.1| peptide deformylase [Terriglobus saanensis SP1PR4] Length = 169 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 106/169 (62%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ FPDP+L +V+ P+ + + L+D+M MY+ +GIGLAA QI + R+ +I Sbjct: 1 MLYEIIKFPDPVLEKVAEPVTLFDDSLKKLVDDMFASMYAAEGIGLAAPQINISRRITII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + +V INP++I + +EGCLS+PD R V R+A++ VR D +H Sbjct: 61 DLSFQKRPEEKIVLINPEVIAV-EGKQHEEEGCLSLPDIREKVTRAAWVKVRAQDATGKH 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LLA QHE+DHLNGILFI +SRLKRD++++++ K+++ + Sbjct: 120 FEVEGTELLARAFQHEIDHLNGILFISKISRLKRDLVSRRIRKMMKNGE 168 >gi|224826194|ref|ZP_03699297.1| peptide deformylase [Lutiella nitroferrum 2002] gi|224601831|gb|EEG08011.1| peptide deformylase [Lutiella nitroferrum 2002] Length = 167 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 105/167 (62%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V+RP+ ++ I LID+M E MY +GIGLAA Q+ V R+VV Sbjct: 1 MALLTILHYPDERLHKVARPVGAVDERIRQLIDDMAETMYECNGIGLAATQVNVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + F+NP+I+ D VY+EGCLS+P V RS ++ VR ++ N + Sbjct: 61 IDVSE--EKSALTAFVNPEIVERRGDT-VYEEGCLSVPGIYDKVHRSEWVRVRALNRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I DGLLA C+QHE+DHL+G +F+D+LS+LK+ I KM K + Sbjct: 118 PFEIETDGLLAICIQHEIDHLDGKVFVDYLSQLKQSRIKAKMKKREK 164 >gi|258404153|ref|YP_003196895.1| peptide deformylase [Desulfohalobium retbaense DSM 5692] gi|257796380|gb|ACV67317.1| peptide deformylase [Desulfohalobium retbaense DSM 5692] Length = 167 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 66/163 (40%), Positives = 105/163 (64%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +PDP+L R + P+ +I+ ++ L +M+E MY+ GIGLAA Q+G +RL+ +D+ Sbjct: 5 ICTYPDPVLARRAEPVAEISEEVRQLASDMVETMYANQGIGLAAPQVGKSWRLITVDISG 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++ + +NP+I + +EGCLS+P++R+ V+R+A + V D + + Sbjct: 65 PENQTELVTLVNPEIQWRDGETET-EEGCLSVPEFRSKVQRAAKVRVTGQDLDGNAVDME 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADGLLA CLQHE+DHL G + +DH+SRLKR M TKK+SK + Sbjct: 124 ADGLLAVCLQHEIDHLEGTIILDHVSRLKRSMYTKKVSKWQKQ 166 >gi|190576007|ref|YP_001973852.1| peptide deformylase [Stenotrophomonas maltophilia K279a] gi|229487565|sp|B2FIR4|DEF_STRMK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|190013929|emb|CAQ47569.1| putative peptide deformylase [Stenotrophomonas maltophilia K279a] Length = 170 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 81/170 (47%), Positives = 106/170 (62%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVS---RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + E LIDNM MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + P VFINP+I+ VYQEGCLS+P ADV R+ ITV+Y+D Sbjct: 61 FMVIDVSE--EKNEPHVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N Q Q + A +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K + Sbjct: 118 NGQEQQMEAGDVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167 >gi|90413779|ref|ZP_01221767.1| peptide deformylase [Photobacterium profundum 3TCK] gi|90325248|gb|EAS41745.1| peptide deformylase [Photobacterium profundum 3TCK] Length = 169 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+E I +I N++D+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSLLQVLTFPDERLRTIAKPVEAITPEIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I + + +EGCLS+P RA V R+A ++V+ +D + Sbjct: 61 IDISE--ERDQPMVLINPEITDKRGEDGI-EEGCLSVPGSRALVPRAAEVSVKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + D Sbjct: 118 PFSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFND 167 >gi|255067832|ref|ZP_05319687.1| peptide deformylase [Neisseria sicca ATCC 29256] gi|255047923|gb|EET43387.1| peptide deformylase [Neisseria sicca ATCC 29256] Length = 193 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 27 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 87 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 143 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 144 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190 >gi|229524948|ref|ZP_04414353.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] gi|229338529|gb|EEO03546.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] Length = 194 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 26 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 86 IDISET--RDLPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 142 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192 >gi|134093408|ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicoxydans] gi|133737311|emb|CAL60354.1| Peptide deformylase (PDF) [Herminiimonas arsenicoxydans] Length = 176 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++++P+ ++ I L+ +M E MY G+GLAA Q+ V +++V Sbjct: 1 MSILNILRYPDSRLHKIAKPVTTFDARIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R +INP++I S + +Y EGCLS+P V+R A + VR D + + Sbjct: 61 IDTSET--RTELRAYINPELIWVSPEMQIYDEGCLSVPGVYDGVERHAKVKVRAYDADGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G +F+++LS LKR+ I KM K + Sbjct: 119 QFELEAEGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKMLKEERE 166 >gi|254295706|ref|ZP_04963163.1| polypeptide deformylase [Burkholderia pseudomallei 406e] gi|157805961|gb|EDO83131.1| polypeptide deformylase [Burkholderia pseudomallei 406e] Length = 165 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 2/162 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++VID+ + Sbjct: 4 ILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSE 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + + Sbjct: 64 --DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFELD 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 122 CEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 163 >gi|254523595|ref|ZP_05135650.1| peptide deformylase [Stenotrophomonas sp. SKA14] gi|219721186|gb|EED39711.1| peptide deformylase [Stenotrophomonas sp. SKA14] Length = 170 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 81/170 (47%), Positives = 106/170 (62%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVS---RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + E LIDNM MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + P VFINP+I+ VYQEGCLS+P ADV R+ ITV+Y+D Sbjct: 61 FMVIDVSE--EKNEPHVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N Q Q + A +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K + Sbjct: 118 NGQEQQLEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167 >gi|220903297|ref|YP_002478609.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867596|gb|ACL47931.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 172 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +PDP L+ V P+ ++ +I L +MLE MY G+GLAA Q+G R++V+ Sbjct: 1 MILDIVTYPDPRLKEVCEPVAEVTDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQ 120 D +NP V INP + ++ QEGCLS+P +YRADVKR + + + D + Sbjct: 61 DPSAQKDERNPRVLINPVLTLSGEEIISEQEGCLSVPMNYRADVKRMSRVHLSATDLDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A +QHE DHL+GILFID +SRL+R + K+ K ++ + Sbjct: 121 AIEEDLEDFDAIVMQHEYDHLDGILFIDKVSRLRRSLYDSKVKKWLKRK 169 >gi|296535343|ref|ZP_06897545.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] gi|296264327|gb|EFH10750.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] Length = 177 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 79/166 (47%), Positives = 113/166 (68%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+++ PD LR +RP+ +++ + L ML MY GIGLAA QIG L RLVV+DL Sbjct: 8 PILLVPDARLRAKARPVGPGDTETVRALAPRMLATMYKAPGIGLAAPQIGELLRLVVVDL 67 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 Q + P V INP+I+ S + S +EGCLS+P+ A+V R A I VR++D + Sbjct: 68 QP-DEKPEPYVMINPEIVAASTELSSREEGCLSLPNQYAEVTRPAEIKVRWLDLEGAKRE 126 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLATC+QHE+DHLNG+LF+DHLS LKR+M+ +K++K ++ + Sbjct: 127 MQADGLLATCIQHEIDHLNGVLFVDHLSALKRNMLLRKLAKELKAQ 172 >gi|91781430|ref|YP_556636.1| peptide deformylase [Burkholderia xenovorans LB400] gi|91685384|gb|ABE28584.1| peptide deformylase [Burkholderia xenovorans LB400] Length = 167 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++++P+E +N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSD--DHNELLTFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164 >gi|309785609|ref|ZP_07680240.1| peptide deformylase [Shigella dysenteriae 1617] gi|308926729|gb|EFP72205.1| peptide deformylase [Shigella dysenteriae 1617] Length = 169 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 116/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEGGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|296161362|ref|ZP_06844169.1| peptide deformylase [Burkholderia sp. Ch1-1] gi|295888348|gb|EFG68159.1| peptide deformylase [Burkholderia sp. Ch1-1] Length = 167 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++++P+E +N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSD--DHNELLAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164 >gi|254507283|ref|ZP_05119419.1| peptide deformylase [Vibrio parahaemolyticus 16] gi|219549743|gb|EED26732.1| peptide deformylase [Vibrio parahaemolyticus 16] Length = 172 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 109/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 IDISET--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|298290074|ref|YP_003692013.1| peptide deformylase [Starkeya novella DSM 506] gi|296926585|gb|ADH87394.1| peptide deformylase [Starkeya novella DSM 506] Length = 182 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 89/178 (50%), Positives = 128/178 (71%), Gaps = 8/178 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR +S PI ++++ + ++++M E MY GIGLAAVQ+G+ R++ Sbjct: 1 MSIRPLVIIPDSRLRLISDPIVRVDARVRAIVEDMFETMYDAPGIGLAAVQVGIPERIIT 60 Query: 61 IDL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+ + +KNP+ INP+II+ S++ SVY EGCLSIP+Y ADV+R A + V Sbjct: 61 VDVVRREEGEEEGAEEKKNPIALINPEIISSSEEISVYSEGCLSIPEYYADVERPARVKV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 RYMD N + Q I ADGLLATC+QHE+DHLNG+LFIDH+S+LKRD + KK +K+ + ++ Sbjct: 121 RYMDLNGETQEIDADGLLATCVQHEIDHLNGVLFIDHISKLKRDRVMKKFTKIAKEKE 178 >gi|261346901|ref|ZP_05974545.1| peptide deformylase [Providencia rustigianii DSM 4541] gi|282564968|gb|EFB70503.1| peptide deformylase [Providencia rustigianii DSM 4541] Length = 173 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 111/169 (65%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK+++ I ++D+M E MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLNILHYPDERLRTIAKPVEKVDASIQRIVDDMFETMYDEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP++I + + +EGCLSIP+ + V R+ + VR ++ N + Sbjct: 61 IDVSES--RSERLVLINPELIDKKGETGI-EEGCLSIPEQQGFVARAEQVKVRALNYNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + R Sbjct: 118 LFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRQR 166 >gi|313203124|ref|YP_004041781.1| peptide deformylase [Paludibacter propionicigenes WB4] gi|312442440|gb|ADQ78796.1| peptide deformylase [Paludibacter propionicigenes WB4] Length = 183 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + + +LR+V+ PI ++ LIDNM + MY +G+GLAA Q+G+ RL+VI Sbjct: 1 MILPIYTYGNAVLRKVAEPINADYPELNTLIDNMFQTMYHAEGVGLAAPQVGLPIRLLVI 60 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL D + INP+I+ S++ EGCLSIP V R+ I + Y+D Sbjct: 61 DLAPFKEDDPELGAFKITMINPEILERSEEEVSGDEGCLSIPGIHETVSRAQSIKITYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + +G A +QHE DHL G LF DH++ ++R ++ K++ +V+ + Sbjct: 121 PDFKEHTDVFEGYKARVVQHEYDHLEGHLFTDHVTPIRRQLLKSKLTNIVKGK 173 >gi|149185875|ref|ZP_01864190.1| Peptide deformylase [Erythrobacter sp. SD-21] gi|148830436|gb|EDL48872.1| Peptide deformylase [Erythrobacter sp. SD-21] Length = 188 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 84/186 (45%), Positives = 114/186 (61%), Gaps = 19/186 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L+ VS P+ + + ++ L+ +M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAIREILEVPDPRLKVVSEPVTEFDDELRELVSDMFETMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDLQDHAH-------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 IDLQ +K P VF+NP+I+ ++D + YQEGCLS+PD Sbjct: 61 IDLQPEDEDAEGEVCNHGGHEHVHYPTKKEPRVFVNPEILDPAEDLATYQEGCLSVPDIF 120 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 ADV R A VRY D + +GL+ATCLQHE+DHL GILFIDHLSRLKR+M KK Sbjct: 121 ADVDRPATCRVRYQDLEGETHEEELEGLMATCLQHEMDHLEGILFIDHLSRLKRNMALKK 180 Query: 162 MSKLVQ 167 + KL + Sbjct: 181 LKKLRE 186 >gi|73543090|ref|YP_297610.1| peptide deformylase [Ralstonia eutropha JMP134] gi|72120503|gb|AAZ62766.1| peptide deformylase [Ralstonia eutropha JMP134] Length = 168 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L V++P+++++ I L+ +M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAKLDILTYPDPRLHTVAKPVKEVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD+ V++EGCLS+P+ V+R + VR ++ + Sbjct: 61 IDVSET--RDALQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G +F+++LS LK++ I K+ K + R Sbjct: 119 TFELDADDLLAVCIQHEMDHLLGKVFVEYLSPLKQNRIKSKLHKRERAR 167 >gi|325294662|ref|YP_004281176.1| peptide deformylase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065110|gb|ADY73117.1| Peptide deformylase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 177 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 104/168 (61%), Gaps = 3/168 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + I+PD +L++ + + + N ++ L+++M E MY G+GLAA QIG+L ++VVI Sbjct: 1 MIREIRIYPDDVLKKKAEVVTEFNEELEQLVNDMFETMYKRGGVGLAANQIGILKKVVVI 60 Query: 62 DLQDHAHR--KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DL + K ++ INP+I+ + +EGCLS+P VKR+A+ V+ + Sbjct: 61 DLHSGKEKQGKEQIILINPEIVALEGEEVK-EEGCLSLPGLYKKVKRAAYAKVKAQNLKG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + II +GLLA QHE+DHLNGI+FID LS L+R + +K KL + Sbjct: 120 EEFIIEGEGLLARAFQHEIDHLNGIVFIDRLSPLQRRLALEKYKKLKR 167 >gi|77166461|ref|YP_344986.1| peptide deformylase [Nitrosococcus oceani ATCC 19707] gi|254435308|ref|ZP_05048815.1| peptide deformylase [Nitrosococcus oceani AFC27] gi|123593232|sp|Q3J6U0|DEF_NITOC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|76884775|gb|ABA59456.1| peptide deformylase [Nitrosococcus oceani ATCC 19707] gi|207088419|gb|EDZ65691.1| peptide deformylase [Nitrosococcus oceani AFC27] Length = 167 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP LRR ++P+ ++ I L D+MLE MY GIGLAAVQ+ V ++VV Sbjct: 1 MAILNILHYPDPRLRRKAQPVAAVDKSIKKLADDMLETMYQAPGIGLAAVQVNVPKQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +P+V INP+I+ + +EGCLS+P+ V R+A ITV Y+D Q Sbjct: 61 IDISE--DKSSPLVLINPEIVAR-QGKAESEEGCLSVPEIFEPVTRAAEITVHYLDREGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + LLATC+QHELDHL G LFID+ S LKR I KK K +L Sbjct: 118 KQELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165 >gi|281306913|pdb|2W3T|A Chain A, Chloro Complex Of The Ni-Form Of E.Coli Deformylase gi|281306914|pdb|2W3U|A Chain A, Formate Complex Of The Ni-Form Of E.Coli Deformylase Length = 188 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 116/167 (69%), Gaps = 3/167 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID Sbjct: 2 VLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVID 61 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 62 VSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 118 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 119 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165 >gi|88860597|ref|ZP_01135234.1| N-terminal methionine peptide deformylase [Pseudoalteromonas tunicata D2] gi|88817192|gb|EAR27010.1| N-terminal methionine peptide deformylase [Pseudoalteromonas tunicata D2] Length = 167 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ +++ I ++ +M + MY GIGLAA Q + R+VV Sbjct: 1 MAFLEVLRFPDERLRTIAKPVTQVDDSIKKIVADMFDTMYEESGIGLAATQANIHLRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + +V INP+I + +EGCLS+P+ A V R+ +TV+ ++ + Q Sbjct: 61 IDVTE--DKSDQLVLINPEITKKDGST-ISEEGCLSVPNSYAKVDRAETVTVKALNLDGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL G LF+D+LS LKRD I KK+ K ++ Sbjct: 118 EFSLDADGLLAICIQHELDHLQGKLFVDYLSPLKRDRIRKKLEKEAKM 165 >gi|238921409|ref|YP_002934924.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146] gi|259645180|sp|C5BF17|DEF_EDWI9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238870978|gb|ACR70689.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146] Length = 171 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 111/169 (65%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ +I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ + + +EGCLS+P+ RA V R+ I VR +D + + Sbjct: 61 IDVSE--NRDQRLVLINPELLQHDGEAGI-EEGCLSVPEQRALVTRAENIKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGLLA C+QHE+DHL G LFID+LS LKR I +K+ KL + + Sbjct: 118 SFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166 >gi|241664932|ref|YP_002983292.1| peptide deformylase [Ralstonia pickettii 12D] gi|309780262|ref|ZP_07675013.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] gi|240866959|gb|ACS64620.1| peptide deformylase [Ralstonia pickettii 12D] gi|308920965|gb|EFP66611.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] Length = 171 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY G+GLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD+ V+ EGCLS+PD V R A + VR ++ + Sbjct: 61 IDVSES--RDELRVFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + AD LLA C+QHE+DHL G +F+++LS LK+ I K+ K + Sbjct: 119 TFELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKHQR 165 >gi|222054052|ref|YP_002536414.1| peptide deformylase [Geobacter sp. FRC-32] gi|221563341|gb|ACM19313.1| peptide deformylase [Geobacter sp. FRC-32] Length = 171 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 1/166 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K ++ FPDP L++ +P+ IN + L+ +M E MY G+GLAA QIGV R+VVI Sbjct: 1 MIKKILTFPDPELKKKCQPVTVINDKVRELVRDMAETMYDAPGVGLAAPQIGVHQRVVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + +V INP I+ + + +EGCLSIP Y A+V+R + V+ ++ + Sbjct: 61 DVTGKDEQPQLLVAINPVIVHADGE-AYEEEGCLSIPKYAANVRRHERVVVKALNLEGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLA QHE+DHL+GILFIDH+S LKR++ +K + ++ Sbjct: 120 VTFKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRRTME 165 >gi|206580091|ref|YP_002236311.1| peptide deformylase [Klebsiella pneumoniae 342] gi|288933300|ref|YP_003437359.1| peptide deformylase [Klebsiella variicola At-22] gi|290512102|ref|ZP_06551470.1| peptide deformylase [Klebsiella sp. 1_1_55] gi|238058213|sp|B5XNC4|DEF_KLEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|206569149|gb|ACI10925.1| peptide deformylase [Klebsiella pneumoniae 342] gi|288888029|gb|ADC56347.1| peptide deformylase [Klebsiella variicola At-22] gi|289775892|gb|EFD83892.1| peptide deformylase [Klebsiella sp. 1_1_55] Length = 169 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 115/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + +V INP+++ + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENREER--LVLINPELLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|225075032|ref|ZP_03718231.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens NRL30031/H210] gi|261380545|ref|ZP_05985118.1| peptide deformylase [Neisseria subflava NJ9703] gi|319639522|ref|ZP_07994269.1| peptide deformylase [Neisseria mucosa C102] gi|224953637|gb|EEG34846.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens NRL30031/H210] gi|284796513|gb|EFC51860.1| peptide deformylase [Neisseria subflava NJ9703] gi|317399093|gb|EFV79767.1| peptide deformylase [Neisseria mucosa C102] Length = 167 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+EKI+ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++HLS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164 >gi|148978497|ref|ZP_01814971.1| peptide deformylase [Vibrionales bacterium SWAT-3] gi|145962404|gb|EDK27684.1| peptide deformylase [Vibrionales bacterium SWAT-3] Length = 171 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V++P++++ +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + + +EGCLS+P RA V R+A +TV+ +D + Sbjct: 61 IDISET--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|269214256|ref|ZP_06158455.1| peptide deformylase [Neisseria lactamica ATCC 23970] gi|269210257|gb|EEZ76712.1| peptide deformylase [Neisseria lactamica ATCC 23970] Length = 181 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 75 MDLSE--NRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQSRIKTKLKKRQK 178 >gi|15803814|ref|NP_289848.1| peptide deformylase [Escherichia coli O157:H7 EDL933] gi|15833406|ref|NP_312179.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai] gi|16131166|ref|NP_417745.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655] gi|26249871|ref|NP_755911.1| peptide deformylase [Escherichia coli CFT073] gi|82545649|ref|YP_409596.1| peptide deformylase [Shigella boydii Sb227] gi|82778584|ref|YP_404933.1| peptide deformylase [Shigella dysenteriae Sd197] gi|89110724|ref|AP_004504.1| peptide deformylase [Escherichia coli str. K-12 substr. W3110] gi|91212713|ref|YP_542699.1| peptide deformylase [Escherichia coli UTI89] gi|110643525|ref|YP_671255.1| peptide deformylase [Escherichia coli 536] gi|117625569|ref|YP_858892.1| peptide deformylase [Escherichia coli APEC O1] gi|157156138|ref|YP_001464754.1| peptide deformylase [Escherichia coli E24377A] gi|157162760|ref|YP_001460078.1| peptide deformylase [Escherichia coli HS] gi|168752265|ref|ZP_02777287.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113] gi|168758514|ref|ZP_02783521.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401] gi|168764969|ref|ZP_02789976.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501] gi|168769148|ref|ZP_02794155.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486] gi|168777856|ref|ZP_02802863.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196] gi|168783853|ref|ZP_02808860.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076] gi|168786176|ref|ZP_02811183.1| peptide deformylase [Escherichia coli O157:H7 str. EC869] gi|170018478|ref|YP_001723432.1| peptide deformylase [Escherichia coli ATCC 8739] gi|170082807|ref|YP_001732127.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B] gi|170769511|ref|ZP_02903964.1| peptide deformylase [Escherichia albertii TW07627] gi|191169294|ref|ZP_03031043.1| peptide deformylase [Escherichia coli B7A] gi|191174456|ref|ZP_03035957.1| peptide deformylase [Escherichia coli F11] gi|193066484|ref|ZP_03047528.1| peptide deformylase [Escherichia coli E22] gi|193071544|ref|ZP_03052453.1| peptide deformylase [Escherichia coli E110019] gi|194430283|ref|ZP_03062778.1| peptide deformylase [Escherichia coli B171] gi|194435085|ref|ZP_03067323.1| peptide deformylase [Shigella dysenteriae 1012] gi|194439997|ref|ZP_03072055.1| peptide deformylase [Escherichia coli 101-1] gi|195939834|ref|ZP_03085216.1| peptide deformylase [Escherichia coli O157:H7 str. EC4024] gi|208806494|ref|ZP_03248831.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206] gi|208814593|ref|ZP_03255922.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045] gi|208821413|ref|ZP_03261733.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042] gi|209400361|ref|YP_002272743.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115] gi|209920752|ref|YP_002294836.1| peptide deformylase [Escherichia coli SE11] gi|215488586|ref|YP_002331017.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69] gi|217325115|ref|ZP_03441199.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588] gi|218550562|ref|YP_002384353.1| peptide deformylase [Escherichia fergusonii ATCC 35469] gi|218555844|ref|YP_002388757.1| peptide deformylase [Escherichia coli IAI1] gi|218560348|ref|YP_002393261.1| peptide deformylase [Escherichia coli S88] gi|218691573|ref|YP_002399785.1| peptide deformylase [Escherichia coli ED1a] gi|218696979|ref|YP_002404646.1| peptide deformylase [Escherichia coli 55989] gi|218706894|ref|YP_002414413.1| peptide deformylase [Escherichia coli UMN026] gi|227883418|ref|ZP_04001223.1| peptide deformylase [Escherichia coli 83972] gi|237703016|ref|ZP_04533497.1| peptide deformylase [Escherichia sp. 3_2_53FAA] gi|238902377|ref|YP_002928173.1| peptide deformylase [Escherichia coli BW2952] gi|253771890|ref|YP_003034721.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038447|ref|ZP_04872503.1| peptide deformylase [Escherichia sp. 1_1_43] gi|254163214|ref|YP_003046322.1| peptide deformylase [Escherichia coli B str. REL606] gi|254795223|ref|YP_003080060.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359] gi|256020645|ref|ZP_05434510.1| peptide deformylase [Shigella sp. D9] gi|256025986|ref|ZP_05439851.1| peptide deformylase [Escherichia sp. 4_1_40B] gi|260846084|ref|YP_003223862.1| peptide deformylase [Escherichia coli O103:H2 str. 12009] gi|261224591|ref|ZP_05938872.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK2000] gi|261254515|ref|ZP_05947048.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK966] gi|293406884|ref|ZP_06650808.1| peptide deformylase [Escherichia coli FVEC1412] gi|293412705|ref|ZP_06655373.1| peptide deformylase [Escherichia coli B354] gi|293416705|ref|ZP_06659342.1| peptide deformylase [Escherichia coli B185] gi|293453605|ref|ZP_06664024.1| peptide deformylase [Escherichia coli B088] gi|297517904|ref|ZP_06936290.1| peptide deformylase [Escherichia coli OP50] gi|298382625|ref|ZP_06992220.1| def [Escherichia coli FVEC1302] gi|300815503|ref|ZP_07095728.1| peptide deformylase [Escherichia coli MS 107-1] gi|300896634|ref|ZP_07115151.1| peptide deformylase [Escherichia coli MS 198-1] gi|300903535|ref|ZP_07121457.1| peptide deformylase [Escherichia coli MS 84-1] gi|300918261|ref|ZP_07134865.1| peptide deformylase [Escherichia coli MS 115-1] gi|300921905|ref|ZP_07138060.1| peptide deformylase [Escherichia coli MS 182-1] gi|300932179|ref|ZP_07147459.1| peptide deformylase [Escherichia coli MS 187-1] gi|300973966|ref|ZP_07172373.1| peptide deformylase [Escherichia coli MS 200-1] gi|300979823|ref|ZP_07174725.1| peptide deformylase [Escherichia coli MS 45-1] gi|301018856|ref|ZP_07183095.1| peptide deformylase [Escherichia coli MS 69-1] gi|301021204|ref|ZP_07185238.1| peptide deformylase [Escherichia coli MS 196-1] gi|301046057|ref|ZP_07193236.1| peptide deformylase [Escherichia coli MS 185-1] gi|301305496|ref|ZP_07211588.1| peptide deformylase [Escherichia coli MS 124-1] gi|301325148|ref|ZP_07218680.1| peptide deformylase [Escherichia coli MS 78-1] gi|301643894|ref|ZP_07243924.1| peptide deformylase [Escherichia coli MS 146-1] gi|306816371|ref|ZP_07450509.1| peptide deformylase [Escherichia coli NC101] gi|307139969|ref|ZP_07499325.1| peptide deformylase [Escherichia coli H736] gi|307315135|ref|ZP_07594718.1| peptide deformylase [Escherichia coli W] gi|309794562|ref|ZP_07688984.1| peptide deformylase [Escherichia coli MS 145-7] gi|312968388|ref|ZP_07782598.1| peptide deformylase [Escherichia coli 2362-75] gi|312972452|ref|ZP_07786626.1| peptide deformylase [Escherichia coli 1827-70] gi|331643982|ref|ZP_08345111.1| peptide deformylase [Escherichia coli H736] gi|331649083|ref|ZP_08350169.1| peptide deformylase [Escherichia coli M605] gi|331654879|ref|ZP_08355878.1| peptide deformylase [Escherichia coli M718] gi|331659577|ref|ZP_08360515.1| peptide deformylase [Escherichia coli TA206] gi|331664899|ref|ZP_08365800.1| peptide deformylase [Escherichia coli TA143] gi|331670116|ref|ZP_08370955.1| peptide deformylase [Escherichia coli TA271] gi|331679355|ref|ZP_08380025.1| peptide deformylase [Escherichia coli H591] gi|332281841|ref|ZP_08394254.1| peptide deformylase [Shigella sp. D9] gi|62288071|sp|P0A6K3|DEF_ECOLI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62288072|sp|P0A6K4|DEF_ECOL6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62288073|sp|P0A6K5|DEF_ECO57 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122990717|sp|Q1R646|DEF_ECOUT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123048786|sp|Q0TCH5|DEF_ECOL5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123728325|sp|Q31VZ0|DEF_SHIBS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123769545|sp|Q32B63|DEF_SHIDS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512616|sp|A1AGH8|DEF_ECOK1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167012062|sp|A8A591|DEF_ECOHS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083070|sp|B1IQ13|DEF_ECOLC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229487486|sp|B1X6D9|DEF_ECODH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238058209|sp|B6I200|DEF_ECOSE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238058220|sp|B5YT06|DEF_ECO5E RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767581|sp|B7UK10|DEF_ECO27 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767582|sp|B7MCQ2|DEF_ECO45 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767583|sp|B7LHY3|DEF_ECO55 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767585|sp|B7N171|DEF_ECO81 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767586|sp|B7M0Z2|DEF_ECO8A RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767587|sp|B7NDQ8|DEF_ECOLU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767589|sp|B7LRQ3|DEF_ESCF3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|259645179|sp|C4ZUE1|DEF_ECOBW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|266618787|pdb|3K6L|A Chain A, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex With Peptidomimetic Ligand Bb2827 gi|266618788|pdb|3K6L|B Chain B, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex With Peptidomimetic Ligand Bb2827 gi|266618789|pdb|3K6L|C Chain C, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex With Peptidomimetic Ligand Bb2827 gi|12517916|gb|AAG58408.1|AE005556_1 peptide deformylase [Escherichia coli O157:H7 str. EDL933] gi|26110299|gb|AAN82485.1|AE016767_245 Peptide deformylase [Escherichia coli CFT073] gi|41474|emb|CAA45206.1| fms [Escherichia coli K-12] gi|443989|emb|CAA54367.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli K-12] gi|471304|emb|CAA54826.1| deformylase [Escherichia coli] gi|606221|gb|AAA58084.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli str. K-12 substr. MG1655] gi|1789682|gb|AAC76312.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655] gi|13363625|dbj|BAB37575.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai] gi|81242732|gb|ABB63442.1| peptide deformylase [Shigella dysenteriae Sd197] gi|81247060|gb|ABB67768.1| peptide deformylase [Shigella boydii Sb227] gi|85676755|dbj|BAE78005.1| peptide deformylase [Escherichia coli str. K12 substr. W3110] gi|91074287|gb|ABE09168.1| peptide deformylase [Escherichia coli UTI89] gi|110345117|gb|ABG71354.1| peptide deformylase [Escherichia coli 536] gi|115514693|gb|ABJ02768.1| peptide deformylase [Escherichia coli APEC O1] gi|157068440|gb|ABV07695.1| peptide deformylase [Escherichia coli HS] gi|157078168|gb|ABV17876.1| peptide deformylase [Escherichia coli E24377A] gi|169753406|gb|ACA76105.1| peptide deformylase [Escherichia coli ATCC 8739] gi|169890642|gb|ACB04349.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B] gi|170121568|gb|EDS90499.1| peptide deformylase [Escherichia albertii TW07627] gi|187766994|gb|EDU30838.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196] gi|188013857|gb|EDU51979.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113] gi|188998869|gb|EDU67855.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076] gi|189354695|gb|EDU73114.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401] gi|189361833|gb|EDU80252.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486] gi|189365123|gb|EDU83539.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501] gi|189374112|gb|EDU92528.1| peptide deformylase [Escherichia coli O157:H7 str. EC869] gi|190900649|gb|EDV60449.1| peptide deformylase [Escherichia coli B7A] gi|190905264|gb|EDV64902.1| peptide deformylase [Escherichia coli F11] gi|192925865|gb|EDV80515.1| peptide deformylase [Escherichia coli E22] gi|192955132|gb|EDV85626.1| peptide deformylase [Escherichia coli E110019] gi|194411672|gb|EDX27999.1| peptide deformylase [Escherichia coli B171] gi|194416692|gb|EDX32823.1| peptide deformylase [Shigella dysenteriae 1012] gi|194421049|gb|EDX37078.1| peptide deformylase [Escherichia coli 101-1] gi|208726295|gb|EDZ75896.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206] gi|208735870|gb|EDZ84557.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045] gi|208741536|gb|EDZ89218.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042] gi|209161761|gb|ACI39194.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115] gi|209757358|gb|ACI76991.1| peptide deformylase [Escherichia coli] gi|209757360|gb|ACI76992.1| peptide deformylase [Escherichia coli] gi|209757362|gb|ACI76993.1| peptide deformylase [Escherichia coli] gi|209757366|gb|ACI76995.1| peptide deformylase [Escherichia coli] gi|209914011|dbj|BAG79085.1| polypeptide deformylase [Escherichia coli SE11] gi|215266658|emb|CAS11097.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69] gi|217321336|gb|EEC29760.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588] gi|218353711|emb|CAU99982.1| peptide deformylase [Escherichia coli 55989] gi|218358103|emb|CAQ90750.1| peptide deformylase [Escherichia fergusonii ATCC 35469] gi|218362612|emb|CAR00238.1| peptide deformylase [Escherichia coli IAI1] gi|218367117|emb|CAR04891.1| peptide deformylase [Escherichia coli S88] gi|218429137|emb|CAR10089.2| peptide deformylase [Escherichia coli ED1a] gi|218433991|emb|CAR14908.1| peptide deformylase [Escherichia coli UMN026] gi|222034995|emb|CAP77738.1| Peptide deformylase [Escherichia coli LF82] gi|226838953|gb|EEH70976.1| peptide deformylase [Escherichia sp. 1_1_43] gi|226902280|gb|EEH88539.1| peptide deformylase [Escherichia sp. 3_2_53FAA] gi|227839562|gb|EEJ50028.1| peptide deformylase [Escherichia coli 83972] gi|238861987|gb|ACR63985.1| peptide deformylase [Escherichia coli BW2952] gi|242378813|emb|CAQ33605.1| peptide deformylase [Escherichia coli BL21(DE3)] gi|253322934|gb|ACT27536.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975115|gb|ACT40786.1| peptide deformylase [Escherichia coli B str. REL606] gi|253979271|gb|ACT44941.1| peptide deformylase [Escherichia coli BL21(DE3)] gi|254594623|gb|ACT73984.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359] gi|257761231|dbj|BAI32728.1| peptide deformylase [Escherichia coli O103:H2 str. 12009] gi|260447695|gb|ACX38117.1| peptide deformylase [Escherichia coli DH1] gi|281180321|dbj|BAI56651.1| polypeptide deformylase [Escherichia coli SE15] gi|284923293|emb|CBG36387.1| polypeptide deformylase [Escherichia coli 042] gi|291321731|gb|EFE61162.1| peptide deformylase [Escherichia coli B088] gi|291425695|gb|EFE98729.1| peptide deformylase [Escherichia coli FVEC1412] gi|291431281|gb|EFF04266.1| peptide deformylase [Escherichia coli B185] gi|291468352|gb|EFF10845.1| peptide deformylase [Escherichia coli B354] gi|294491738|gb|ADE90494.1| peptide deformylase [Escherichia coli IHE3034] gi|298276461|gb|EFI17979.1| def [Escherichia coli FVEC1302] gi|299881612|gb|EFI89823.1| peptide deformylase [Escherichia coli MS 196-1] gi|300301942|gb|EFJ58327.1| peptide deformylase [Escherichia coli MS 185-1] gi|300308976|gb|EFJ63496.1| peptide deformylase [Escherichia coli MS 200-1] gi|300359511|gb|EFJ75381.1| peptide deformylase [Escherichia coli MS 198-1] gi|300399513|gb|EFJ83051.1| peptide deformylase [Escherichia coli MS 69-1] gi|300404408|gb|EFJ87946.1| peptide deformylase [Escherichia coli MS 84-1] gi|300409429|gb|EFJ92967.1| peptide deformylase [Escherichia coli MS 45-1] gi|300414522|gb|EFJ97832.1| peptide deformylase [Escherichia coli MS 115-1] gi|300421706|gb|EFK05017.1| peptide deformylase [Escherichia coli MS 182-1] gi|300460063|gb|EFK23556.1| peptide deformylase [Escherichia coli MS 187-1] gi|300532395|gb|EFK53457.1| peptide deformylase [Escherichia coli MS 107-1] gi|300839191|gb|EFK66951.1| peptide deformylase [Escherichia coli MS 124-1] gi|300847980|gb|EFK75740.1| peptide deformylase [Escherichia coli MS 78-1] gi|301077737|gb|EFK92543.1| peptide deformylase [Escherichia coli MS 146-1] gi|305850767|gb|EFM51224.1| peptide deformylase [Escherichia coli NC101] gi|306905484|gb|EFN36019.1| peptide deformylase [Escherichia coli W] gi|307555374|gb|ADN48149.1| peptide deformylase [Escherichia coli ABU 83972] gi|307628321|gb|ADN72625.1| peptide deformylase [Escherichia coli UM146] gi|308121612|gb|EFO58874.1| peptide deformylase [Escherichia coli MS 145-7] gi|309703698|emb|CBJ03039.1| polypeptide deformylase [Escherichia coli ETEC H10407] gi|310334829|gb|EFQ01034.1| peptide deformylase [Escherichia coli 1827-70] gi|312287213|gb|EFR15123.1| peptide deformylase [Escherichia coli 2362-75] gi|312947837|gb|ADR28664.1| peptide deformylase [Escherichia coli O83:H1 str. NRG 857C] gi|315062578|gb|ADT76905.1| peptide deformylase [Escherichia coli W] gi|315137862|dbj|BAJ45021.1| peptide deformylase [Escherichia coli DH1] gi|315255870|gb|EFU35838.1| peptide deformylase [Escherichia coli MS 85-1] gi|315284579|gb|EFU44024.1| peptide deformylase [Escherichia coli MS 110-3] gi|315292338|gb|EFU51690.1| peptide deformylase [Escherichia coli MS 153-1] gi|315297152|gb|EFU56432.1| peptide deformylase [Escherichia coli MS 16-3] gi|315617089|gb|EFU97699.1| peptide deformylase [Escherichia coli 3431] gi|320173931|gb|EFW49107.1| Peptide deformylase [Shigella dysenteriae CDC 74-1112] gi|320182716|gb|EFW57602.1| Peptide deformylase [Shigella boydii ATCC 9905] gi|320187008|gb|EFW61720.1| Peptide deformylase [Shigella flexneri CDC 796-83] gi|320191679|gb|EFW66329.1| Peptide deformylase [Escherichia coli O157:H7 str. EC1212] gi|320195378|gb|EFW70005.1| Peptide deformylase [Escherichia coli WV_060327] gi|320199474|gb|EFW74064.1| Peptide deformylase [Escherichia coli EC4100B] gi|320639591|gb|EFX09185.1| peptide deformylase [Escherichia coli O157:H7 str. G5101] gi|320645089|gb|EFX14105.1| peptide deformylase [Escherichia coli O157:H- str. 493-89] gi|320650400|gb|EFX18866.1| peptide deformylase [Escherichia coli O157:H- str. H 2687] gi|320655925|gb|EFX23845.1| peptide deformylase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320666399|gb|EFX33382.1| peptide deformylase [Escherichia coli O157:H7 str. LSU-61] gi|323162965|gb|EFZ48800.1| peptide deformylase [Escherichia coli E128010] gi|323182765|gb|EFZ68166.1| peptide deformylase [Escherichia coli 1357] gi|323189108|gb|EFZ74392.1| peptide deformylase [Escherichia coli RN587/1] gi|323376835|gb|ADX49103.1| peptide deformylase [Escherichia coli KO11] gi|323934515|gb|EGB30923.1| peptide deformylase [Escherichia coli E1520] gi|323939292|gb|EGB35504.1| peptide deformylase [Escherichia coli E482] gi|323944293|gb|EGB40369.1| peptide deformylase [Escherichia coli H120] gi|323950200|gb|EGB46082.1| peptide deformylase [Escherichia coli H252] gi|323954591|gb|EGB50374.1| peptide deformylase [Escherichia coli H263] gi|323966248|gb|EGB61683.1| peptide deformylase [Escherichia coli M863] gi|323970090|gb|EGB65364.1| peptide deformylase [Escherichia coli TA007] gi|323974761|gb|EGB69874.1| peptide deformylase [Escherichia coli TW10509] gi|324009052|gb|EGB78271.1| peptide deformylase [Escherichia coli MS 57-2] gi|324014963|gb|EGB84182.1| peptide deformylase [Escherichia coli MS 60-1] gi|324111965|gb|EGC05944.1| peptide deformylase [Escherichia fergusonii B253] gi|324116324|gb|EGC10244.1| peptide deformylase [Escherichia coli E1167] gi|326342535|gb|EGD66309.1| Peptide deformylase [Escherichia coli O157:H7 str. 1044] gi|326344522|gb|EGD68271.1| Peptide deformylase [Escherichia coli O157:H7 str. 1125] gi|327250935|gb|EGE62628.1| peptide deformylase [Escherichia coli STEC_7v] gi|330909331|gb|EGH37845.1| peptide deformylase [Escherichia coli AA86] gi|331036276|gb|EGI08502.1| peptide deformylase [Escherichia coli H736] gi|331041581|gb|EGI13725.1| peptide deformylase [Escherichia coli M605] gi|331046894|gb|EGI18972.1| peptide deformylase [Escherichia coli M718] gi|331052792|gb|EGI24825.1| peptide deformylase [Escherichia coli TA206] gi|331057409|gb|EGI29395.1| peptide deformylase [Escherichia coli TA143] gi|331062178|gb|EGI34098.1| peptide deformylase [Escherichia coli TA271] gi|331072527|gb|EGI43852.1| peptide deformylase [Escherichia coli H591] gi|332085435|gb|EGI90601.1| peptide deformylase [Shigella boydii 5216-82] gi|332086260|gb|EGI91416.1| peptide deformylase [Shigella dysenteriae 155-74] gi|332090315|gb|EGI95413.1| peptide deformylase [Shigella boydii 3594-74] gi|332104193|gb|EGJ07539.1| peptide deformylase [Shigella sp. D9] gi|332345234|gb|AEE58568.1| peptide deformylase [Escherichia coli UMNK88] Length = 169 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 117/169 (69%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|38639603|ref|NP_943372.1| peptide deformylase [Klebsiella pneumoniae] gi|168998831|ref|YP_001688099.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044] gi|262040714|ref|ZP_06013948.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|38016701|gb|AAR07722.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae] gi|238549851|dbj|BAH66202.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041938|gb|EEW42975.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 169 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 117/170 (68%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R ++ + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALNRYGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+D Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167 >gi|296134589|ref|YP_003641831.1| peptide deformylase [Thiomonas intermedia K12] gi|295794711|gb|ADG29501.1| peptide deformylase [Thiomonas intermedia K12] Length = 168 Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L V++P+ ++ + L+ M E MY+++G+GLAA Q+ V R++V Sbjct: 1 MEQLTILQYPDPRLYIVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R P+ INP+I+ S + ++EGCLS+P V R A + VR +D Q Sbjct: 61 MDTSEQ--RNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A C+QHE+DHL G +F+D+LS LKR+ I KM K + Sbjct: 119 PFEMDADGLTAVCIQHEMDHLMGKVFVDYLSPLKRNRIKTKMLKRQRQ 166 >gi|241760428|ref|ZP_04758522.1| peptide deformylase [Neisseria flavescens SK114] gi|241319097|gb|EER55590.1| peptide deformylase [Neisseria flavescens SK114] Length = 167 Score = 207 bits (528), Expect = 3e-52, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+EKI+ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++HLS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164 >gi|329913547|ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] gi|327545311|gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] Length = 177 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +++RP+ + + L+ +M E MY G+GLA+ Q+ V +L++ Sbjct: 1 MPLLNILRYPDPRLHKIARPVTVFDDRLKQLVADMAETMYDAPGVGLASSQVDVHEQLII 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D ++ V INP+I S + +Y EGCLS+P V+R A I VR +D + + Sbjct: 61 VDISD--NQSELRVLINPEITWASTEMQLYDEGCLSVPGVYDGVERHARIKVRALDVDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADGLLA C+QHE+DHL G +F+++LS LKR+ I KM K + Sbjct: 119 EFDTTADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERE 166 >gi|149190435|ref|ZP_01868706.1| peptide deformylase [Vibrio shilonii AK1] gi|148835689|gb|EDL52655.1| peptide deformylase [Vibrio shilonii AK1] Length = 169 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 107/167 (64%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I ++D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKVVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R PMV INP+I + + +EGCLS+P RA V R+A ++V+ ++ + + Sbjct: 61 IDISDT--RDQPMVLINPEITEKRGEDGI-EEGCLSVPGARALVPRAAEVSVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 AD LLA C+QHELDHL G LF+D+LS LKR I K+ K+ + Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKDKLEKIKR 164 >gi|83404829|ref|YP_424843.1| peptide deformylase [Escherichia coli] gi|157149370|ref|YP_001451409.1| peptide deformylase [Escherichia coli E24377A] gi|298206469|ref|YP_003717571.1| peptide deformylase [Escherichia coli ETEC 1392/75] gi|83308554|emb|CAI79523.1| peptide deformylase [Escherichia coli] gi|157076537|gb|ABV16250.1| peptide deformylase [Escherichia coli E24377A] gi|297374341|emb|CBL93313.1| peptide deformylase [Escherichia coli ETEC 1392/75] Length = 169 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 116/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|91791393|ref|YP_561044.1| peptide deformylase [Shewanella denitrificans OS217] gi|91713395|gb|ABE53321.1| peptide deformylase [Shewanella denitrificans OS217] Length = 170 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++ P+ + ID+M+E MY+ GIGLAA Q+ +L+V Sbjct: 1 MPLLNVLRFPDERLRTIAVPVTDFGPQLQAQIDSMIETMYAEKGIGLAASQVDFHQQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P +FINP+I+ S +FS +EGCLS+P A V R+ F+T++ +D + + Sbjct: 61 MDLQDDIER--PKIFINPEIVAKSGEFS-NEEGCLSVPGVYAKVDRAEFVTLKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD L A C+QHE+DHL G LF+D+LS LKR I K+ K +L Sbjct: 118 PFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARLE 166 >gi|238021725|ref|ZP_04602151.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147] gi|237866339|gb|EEP67381.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147] Length = 167 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 105/170 (61%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ P+ L V++P+ +++ I L+ +M E MY++ GIGLAA Q+ V R+VV Sbjct: 1 MALLPILTHPNERLHIVAQPVAQVDERIRTLVQDMAETMYASKGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + + INP I + Y+EGCLS+P +V R+ ITV ++D Sbjct: 61 IDLSE--EKNQLLALINPVITKKDGET-TYEEGCLSVPGIYEEVTRAETITVEFLDIQGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + ADGLLA C+QHELDHLNG LF+++LS LK++ I KM K + R+ Sbjct: 118 KQTLDADGLLAICVQHELDHLNGKLFVEYLSPLKQNRIKTKMKK--RQRE 165 >gi|312882739|ref|ZP_07742474.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369597|gb|EFP97114.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] Length = 173 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+E + +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVATPVENVTPEIQKFVDDMIETMYDEEGIGLAATQVDCHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDVSET--RDQPMVLINPEILDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLTKIKRFNE 167 >gi|187732040|ref|YP_001881970.1| peptide deformylase [Shigella boydii CDC 3083-94] gi|238689490|sp|B2U2Q4|DEF_SHIB3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|187429032|gb|ACD08306.1| peptide deformylase [Shigella boydii CDC 3083-94] Length = 169 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 116/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPKQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|163751680|ref|ZP_02158899.1| polypeptide deformylase [Shewanella benthica KT99] gi|161328419|gb|EDP99575.1| polypeptide deformylase [Shewanella benthica KT99] Length = 170 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ + N+ + I+NM E MY G+GLAA Q+ +L++ Sbjct: 1 MSLLKILRFPDERLRTLAKPVTEFNTGLQTQINNMFETMYEDKGVGLAATQVDYHRQLII 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFIN +I+ S FS +EGCLS+P + AD++R+ +T++ +D + Sbjct: 61 MDLQDEEER--PKVFINLEIVASSGHFS-NEEGCLSVPGFYADIERAEHVTIKALDRDGI 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGL A CLQHELDHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFTLDADGLFAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARLE 166 >gi|54310617|ref|YP_131637.1| peptide deformylase [Photobacterium profundum SS9] gi|46915060|emb|CAG21835.1| Putative polypeptide deformylase [Photobacterium profundum SS9] Length = 169 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++IFPD LR +++P+E I DI N++D+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSLLQVLIFPDERLRTIAKPVEAITPDIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I + + +EGCLS+P RA V R+A ++V+ +D + Sbjct: 61 IDISE--ERDQPMVLINPEITDKRGEDGI-EEGCLSVPGSRALVSRAAEVSVKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + + Sbjct: 118 PFSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFNE 167 >gi|152972195|ref|YP_001337341.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896783|ref|YP_002921528.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044] gi|330002243|ref|ZP_08304254.1| peptide deformylase [Klebsiella sp. MS 92-3] gi|166198519|sp|A6TEU0|DEF_KLEP7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|150957044|gb|ABR79074.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549110|dbj|BAH65461.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537382|gb|EGF63631.1| peptide deformylase [Klebsiella sp. MS 92-3] Length = 169 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 116/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R+ +V INP+++ + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NREEQLVLINPEMLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|300946508|ref|ZP_07160774.1| peptide deformylase [Escherichia coli MS 116-1] gi|300955324|ref|ZP_07167706.1| peptide deformylase [Escherichia coli MS 175-1] gi|300317768|gb|EFJ67552.1| peptide deformylase [Escherichia coli MS 175-1] gi|300453814|gb|EFK17434.1| peptide deformylase [Escherichia coli MS 116-1] Length = 169 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 116/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + + +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKICALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|292489813|ref|YP_003532703.1| peptide deformylase [Erwinia amylovora CFBP1430] gi|292900855|ref|YP_003540224.1| polypeptide deformylase [Erwinia amylovora ATCC 49946] gi|291200703|emb|CBJ47836.1| polypeptide deformylase [Erwinia amylovora ATCC 49946] gi|291555250|emb|CBA23521.1| peptide deformylase [Erwinia amylovora CFBP1430] gi|312173996|emb|CBX82249.1| peptide deformylase [Erwinia amylovora ATCC BAA-2158] Length = 169 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 113/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSES--RDERLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL G LFID+LS +KR I +K+ KL + Sbjct: 118 SFELEADGLLAICIQHELDHLVGKLFIDYLSPMKRQRIRQKLEKLHRQ 165 >gi|114561212|ref|YP_748725.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] gi|114332505|gb|ABI69887.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] Length = 188 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ + IDNMLE MY GIGLAA Q+ +L+V Sbjct: 19 MPLLNVLRFPDERLRTIAQPVTDFGPQLQTQIDNMLETMYLEKGIGLAATQVDFHQQLIV 78 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P +FINP+I+ S D + +EGCLS+P A V R+ F+T++ +D + + Sbjct: 79 MDLQDEVER--PTIFINPQIVASSGDLA-NEEGCLSVPGIYAKVDRAEFVTLKALDRHGK 135 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I K+ K +L Sbjct: 136 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARL 183 >gi|300705526|ref|YP_003747129.1| peptide deformylase [Ralstonia solanacearum CFBP2957] gi|299073190|emb|CBJ44548.1| peptide deformylase [Ralstonia solanacearum CFBP2957] Length = 169 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY G+GLAA QI V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGVGLAATQIDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + Sbjct: 61 IDVSES--RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 119 SFELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLER 167 >gi|24114564|ref|NP_709074.1| peptide deformylase [Shigella flexneri 2a str. 301] gi|30064608|ref|NP_838779.1| peptide deformylase [Shigella flexneri 2a str. 2457T] gi|74313805|ref|YP_312224.1| peptide deformylase [Shigella sonnei Ss046] gi|110807134|ref|YP_690654.1| peptide deformylase [Shigella flexneri 5 str. 8401] gi|170680840|ref|YP_001745549.1| peptide deformylase [Escherichia coli SMS-3-5] gi|218702049|ref|YP_002409678.1| peptide deformylase [Escherichia coli IAI39] gi|260857407|ref|YP_003231298.1| peptide deformylase [Escherichia coli O26:H11 str. 11368] gi|260870029|ref|YP_003236431.1| peptide deformylase [Escherichia coli O111:H- str. 11128] gi|300935284|ref|ZP_07150295.1| peptide deformylase [Escherichia coli MS 21-1] gi|331674794|ref|ZP_08375551.1| peptide deformylase [Escherichia coli TA280] gi|331684929|ref|ZP_08385515.1| peptide deformylase [Escherichia coli H299] gi|39930879|sp|Q83PZ1|DEF_SHIFL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122957164|sp|Q0T016|DEF_SHIF8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123773439|sp|Q3YWX3|DEF_SHISS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767584|sp|B7NLK6|DEF_ECO7I RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767588|sp|B1LGP3|DEF_ECOSM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|24053759|gb|AAN44781.1| peptide deformylase [Shigella flexneri 2a str. 301] gi|30042867|gb|AAP18590.1| peptide deformylase [Shigella flexneri 2a str. 2457T] gi|73857282|gb|AAZ89989.1| peptide deformylase [Shigella sonnei Ss046] gi|110616682|gb|ABF05349.1| peptide deformylase [Shigella flexneri 5 str. 8401] gi|170518558|gb|ACB16736.1| peptide deformylase [Escherichia coli SMS-3-5] gi|218372035|emb|CAR19895.1| peptide deformylase [Escherichia coli IAI39] gi|257756056|dbj|BAI27558.1| peptide deformylase [Escherichia coli O26:H11 str. 11368] gi|257766385|dbj|BAI37880.1| peptide deformylase [Escherichia coli O111:H- str. 11128] gi|281602655|gb|ADA75639.1| putative N-formylmethionyl-tRNA deformylase [Shigella flexneri 2002017] gi|300459487|gb|EFK22980.1| peptide deformylase [Escherichia coli MS 21-1] gi|323154124|gb|EFZ40327.1| peptide deformylase [Escherichia coli EPECa14] gi|323164851|gb|EFZ50642.1| peptide deformylase [Shigella sonnei 53G] gi|323179177|gb|EFZ64751.1| peptide deformylase [Escherichia coli 1180] gi|331067703|gb|EGI39101.1| peptide deformylase [Escherichia coli TA280] gi|331077300|gb|EGI48512.1| peptide deformylase [Escherichia coli H299] gi|332749605|gb|EGJ80022.1| peptide deformylase [Shigella flexneri K-671] gi|332753999|gb|EGJ84372.1| peptide deformylase [Shigella flexneri 2747-71] gi|332996761|gb|EGK16386.1| peptide deformylase [Shigella flexneri K-272] gi|332998313|gb|EGK17913.1| peptide deformylase [Shigella flexneri K-218] gi|333012534|gb|EGK31915.1| peptide deformylase [Shigella flexneri K-304] gi|333014514|gb|EGK33862.1| peptide deformylase [Shigella flexneri K-227] Length = 169 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 117/169 (69%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|259909966|ref|YP_002650322.1| peptide deformylase [Erwinia pyrifoliae Ep1/96] gi|224965588|emb|CAX57120.1| Peptide deformylase [Erwinia pyrifoliae Ep1/96] gi|283480066|emb|CAY75982.1| peptide deformylase [Erwinia pyrifoliae DSM 12163] gi|310765564|gb|ADP10514.1| peptide deformylase [Erwinia sp. Ejp617] Length = 169 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 114/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS +KR I +K+ KL + Sbjct: 118 SVELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165 >gi|187922316|ref|YP_001893958.1| peptide deformylase [Burkholderia phytofirmans PsJN] gi|187713510|gb|ACD14734.1| peptide deformylase [Burkholderia phytofirmans PsJN] Length = 167 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 103/166 (62%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++++P+E +N I L+ +M E MY+ G+GLAA Q+ V R++ Sbjct: 1 MALLNILNYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSD--DHNELLAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164 >gi|197287101|ref|YP_002152973.1| peptide deformylase [Proteus mirabilis HI4320] gi|227354903|ref|ZP_03839317.1| polypeptide deformylase [Proteus mirabilis ATCC 29906] gi|194684588|emb|CAR46445.1| polypeptide deformylase [Proteus mirabilis HI4320] gi|227164985|gb|EEI49824.1| polypeptide deformylase [Proteus mirabilis ATCC 29906] Length = 171 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 112/169 (66%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK++++I ++D+M E MY +GIGLAA Q+ + R++V Sbjct: 1 MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+++ D + +EGCLSIP+ RA V R+ + VR +D N Q Sbjct: 61 IDISET--RDQKLVLINPELLDQEGDTGI-EEGCLSIPEQRAFVPRAERVKVRALDYNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + R Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKRR 166 >gi|309378546|emb|CBX22818.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 167 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164 >gi|218710998|ref|YP_002418619.1| peptide deformylase [Vibrio splendidus LGP32] gi|218324017|emb|CAV20379.1| Peptide deformylase [Vibrio splendidus LGP32] Length = 206 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V++P++++ +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 37 MSVLQVLTLPDNRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 96 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I + + +EGCLS+P RA V R+A +TV+ +D Sbjct: 97 IDISET--RDEPMVLINPEITDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDREGN 153 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 154 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 203 >gi|300115536|ref|YP_003762111.1| peptide deformylase [Nitrosococcus watsonii C-113] gi|299541473|gb|ADJ29790.1| peptide deformylase [Nitrosococcus watsonii C-113] Length = 167 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP LRR ++P+ ++ I L D+MLE MY GIGLAA+Q+ V ++VV Sbjct: 1 MARLNILHYPDPRLRRKAQPVAVVDKSIRKLADDMLETMYQAPGIGLAAIQVNVPKQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +P+V INP+II + +EGCLS+P+ V R+A ITV Y+D Q Sbjct: 61 IDISE--DKSSPLVLINPEIIAR-QGKAESEEGCLSVPEIFEPVTRAAEITVHYLDREGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + LLATC+QHELDHL G LFID+ S LKR I KK K +L Sbjct: 118 KQELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165 >gi|310778475|ref|YP_003966808.1| peptide deformylase [Ilyobacter polytropus DSM 2926] gi|309747798|gb|ADO82460.1| peptide deformylase [Ilyobacter polytropus DSM 2926] Length = 170 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 4/169 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+LR+ + P+E +N +I +ID+M+E M+ G+GLAA QIGV R+ VI Sbjct: 1 MIYDIRTYGDPVLRKEALPVEDVNDEIREIIDSMVESMHEAGGVGLAAPQIGVSKRIFVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D++D RK INP+ + FS + ++EGCLS+P VKR A + ++Y + N + Sbjct: 61 DIEDGKIRK----VINPEFLEFSKEIVEHEEGCLSVPGVYKKVKRPARVKIKYTNENGEK 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+GLL+ QHE DHL+ LF+D LS + + M++KK+ L + + Sbjct: 117 VIEEAEGLLSRAFQHEADHLDATLFVDKLSPVAKRMVSKKLQALKKETE 165 >gi|313673898|ref|YP_004052009.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] gi|312940654|gb|ADR19846.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] Length = 167 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PDP LR +P++K + ++ ++++M E MY+ G+GLAA Q+G+ RL +I Sbjct: 1 MLLEILKYPDPRLRVKCKPVDKFDEELKKIVNDMAETMYNAPGVGLAAPQVGIDKRLFII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + VFINP I+ + +EGCLS+P A+V R+ + D N Sbjct: 61 DIS--KEKNDLKVFINPTILKKEGEI-CDEEGCLSVPGEYANVTRAEVVEAVAQDINGNE 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 II ADGL+A +QHELDHLNG LF+D L KR+ + K + + Sbjct: 118 FIIKADGLMARAIQHELDHLNGTLFLDRLPAFKRESVKKHIKR 160 >gi|194439835|ref|ZP_03071900.1| peptide deformylase [Escherichia coli 101-1] gi|194421225|gb|EDX37247.1| peptide deformylase [Escherichia coli 101-1] gi|323974492|gb|EGB69619.1| peptide deformylase [Escherichia coli TW10509] Length = 169 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 116/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|325267954|ref|ZP_08134603.1| peptide deformylase [Kingella denitrificans ATCC 33394] gi|324980640|gb|EGC16303.1| peptide deformylase [Kingella denitrificans ATCC 33394] Length = 167 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 101/170 (59%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ P+ L V++P+ +++ I L+ +M E MY+ GIGLAA Q+ V R+VV Sbjct: 1 MALLPILTHPNERLHIVAKPVAQVDDRIRTLVADMAETMYAAKGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + INP I + ++EGCLS+P V R+ +TV Y+D + Sbjct: 61 IDLSE--EHNQLLALINPTITKKDGET-TFEEGCLSVPGIYDTVSRAETVTVEYLDTEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + ADGLLA C+QHELDHL G LF+++LS LK+ I K+ K + R+ Sbjct: 118 PQSLDADGLLAICIQHELDHLAGKLFVEYLSPLKQSRIKSKLKK--RQRE 165 >gi|261378988|ref|ZP_05983561.1| peptide deformylase [Neisseria cinerea ATCC 14685] gi|269144603|gb|EEZ71021.1| peptide deformylase [Neisseria cinerea ATCC 14685] Length = 167 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAESVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++HLS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164 >gi|258545465|ref|ZP_05705699.1| peptide deformylase [Cardiobacterium hominis ATCC 15826] gi|258519298|gb|EEV88157.1| peptide deformylase [Cardiobacterium hominis ATCC 15826] Length = 184 Score = 206 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 13/183 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I PD LR+ + P+ + + + + DNM MY GIGLAA Q+ + R+VV Sbjct: 1 MPLLDILIHPDRRLRKTAEPVSQFTNALKTITDNMFATMYEAHGIGLAATQVNIHQRIVV 60 Query: 61 IDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 +D+ + +V INP+II S++ + +QEGCLS+P ADV+R A Sbjct: 61 MDVPERREDDETETPDAPIPHTKLVLINPEIIATSEETASWQEGCLSLPGQFADVERPAK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQ 167 I Y D A+GLL C+QHE+DHLNG+LFIDHLSRLKR+ + KK++K L + Sbjct: 121 IRYAYYDLGGSRCEGEAEGLLGVCIQHEIDHLNGVLFIDHLSRLKRERLEKKLAKSLLQK 180 Query: 168 LRD 170 R+ Sbjct: 181 ERE 183 >gi|296104994|ref|YP_003615140.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059453|gb|ADF64191.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 169 Score = 206 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 112/169 (66%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D Sbjct: 61 IDVSE--NRDGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|227115518|ref|ZP_03829174.1| peptide deformylase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 170 Score = 206 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP++I S D + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSE--ERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 PFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165 >gi|257057414|ref|YP_003135246.1| peptide deformylase [Saccharomonospora viridis DSM 43017] gi|256587286|gb|ACU98419.1| peptide deformylase [Saccharomonospora viridis DSM 43017] Length = 183 Score = 206 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 6/172 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I +P+L + +R + + ++ L+++M E MY+ +G+GLAA QIGV R+ V Sbjct: 1 MTIHPICIVGEPVLHKPTREVSSFDDELATLVEDMFETMYAAEGVGLAANQIGVDLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D ++ V +NP +I D EGCLS+P R+++ V Sbjct: 61 YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDNDWEGCLSVPGESFPTGRASWAKVTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D + G A CLQHE DHL+G L++D L + KKM K + Sbjct: 121 DVEGNPVEVEGTGYFARCLQHETDHLDGYLYLDRLIG-RHARAAKKMLKANK 171 >gi|225677067|ref|ZP_03788072.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590889|gb|EEH12111.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 179 Score = 206 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 106/175 (60%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V Sbjct: 1 MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I SD+ +EGCLSIP+ ++KR ++TV Sbjct: 61 VDVQLETIENEPAGYESIGKFCMINPEITELSDEQVTLKEGCLSIPEQSYEIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K+ + Sbjct: 121 KYRDLNNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKK 175 >gi|238898789|ref|YP_002924471.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259645182|sp|C4K6Y0|DEF_HAMD5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229466549|gb|ACQ68323.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 171 Score = 206 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ P++K++ I + D+MLE MY +GIGLAA Q+ + R++V Sbjct: 1 MSILQILHFPDDRLRKIASPVKKMDDQIRQIADDMLETMYQAEGIGLAATQVNIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + H P++ INP+++ S + + +EGCLSIP +A + R+ IT++ ++ + Sbjct: 61 IDVSEDRH--QPLILINPELLEKSGETGI-EEGCLSIPGEKAFIPRAKEITIQALNREGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHE+DHL G LF+D+LS KR I KKM KL ++ + Sbjct: 118 SFRLSADDLLAICIQHEMDHLIGKLFVDYLSPFKRQRIQKKMEKLQKINE 167 >gi|307822764|ref|ZP_07652995.1| peptide deformylase [Methylobacter tundripaludum SV96] gi|307736368|gb|EFO07214.1| peptide deformylase [Methylobacter tundripaludum SV96] Length = 168 Score = 206 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+ + ++ ++ I L+D+MLE MY + G+GLAA Q+ V R+VV Sbjct: 1 MSILSILEFPDERLRKKAAIVKTVDDKIKKLVDDMLETMYESHGVGLAATQVNVHQRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+ INP+II D +EGCLS+P + V+R+ I V+ +D + Sbjct: 61 IDVSE--EKDAPLCLINPEIIEK-DGVKESEEGCLSVPGFFEKVERAEHIIVKALDREGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A LLA C+QHELDHL+G LF+D++S LKR I KK+ K+ ++ Sbjct: 118 PFELSARDLLAVCVQHELDHLDGKLFVDYISPLKRQRIKKKLEKIHKME 166 >gi|89074760|ref|ZP_01161218.1| peptide deformylase [Photobacterium sp. SKA34] gi|89049524|gb|EAR55085.1| peptide deformylase [Photobacterium sp. SKA34] Length = 169 Score = 206 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 77/167 (46%), Positives = 108/167 (64%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E I +I +ID+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV +NPKI + + +EGCLS+P R V R+A ++V +D N + Sbjct: 61 IDVSE--ERNQPMVLVNPKITEEHGEDGI-EEGCLSVPTARGFVPRAAGVSVTALDRNGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 EYSFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKR 164 >gi|171464332|ref|YP_001798445.1| peptide deformylase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238692833|sp|B1XSN2|DEF_POLNS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|171193870|gb|ACB44831.1| peptide deformylase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 171 Score = 206 bits (526), Expect = 8e-52, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ ++++ I ++ +M + MY G+GLAA Q+ + R+VV Sbjct: 1 MALLTVLCYPDSRLHKVAKPVAQVDARIKKIVADMADTMYEAPGVGLAATQVDIHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + MVFINP+I+ S + ++EGCLS+P++ +V+R A I V+ +D + + Sbjct: 61 IDVSD--EQNELMVFINPEIVWTSSETKSWREGCLSVPEFYDEVERPAEIRVKALDIDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I ADG LA CLQHELDHL G +F+++LS KR I++KM K + Sbjct: 119 EFEIEADGSLAVCLQHELDHLQGKVFVEYLSIFKRTRISQKMKKRAKE 166 >gi|300822910|ref|ZP_07103046.1| peptide deformylase [Escherichia coli MS 119-7] gi|300524676|gb|EFK45745.1| peptide deformylase [Escherichia coli MS 119-7] Length = 169 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 117/169 (69%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKLKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|284040267|ref|YP_003390197.1| peptide deformylase [Spirosoma linguale DSM 74] gi|283819560|gb|ADB41398.1| peptide deformylase [Spirosoma linguale DSM 74] Length = 190 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 11/179 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+ ++ IE + D+ L NM E MY+ GIGLAA QIG R+ V+ Sbjct: 1 MILPIIAYGDPVLRKRAKDIEPGSLDVKTLSQNMFETMYAASGIGLAAPQIGQSVRMFVV 60 Query: 62 DLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D + + VFINP+II + D ++EGCLSIP R +V R I Sbjct: 61 DGEPLNEDEPEEDIDQSLVGFKKVFINPEIIEEAGDDWGFEEGCLSIPGIRGEVFRPEII 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +RY D + DG+ A +QHE DHL+G LF D+L L+R +I KK+S + + + Sbjct: 121 VIRYFDVDWNEHEEEYDGMAARIIQHEYDHLDGKLFTDYLPSLRRTLIKKKLSDISKGK 179 >gi|91790468|ref|YP_551420.1| peptide deformylase [Polaromonas sp. JS666] gi|91699693|gb|ABE46522.1| peptide deformylase [Polaromonas sp. JS666] Length = 173 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L +++P+ +++ + L +M + MY GIGLAA Q+ V RL+V Sbjct: 1 MTQLTILRYPDPRLHTIAKPVGAVDARLRQLASDMFDTMYEAAGIGLAATQVDVHERLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I+ S + V EGCLS+P V+RS + V+ +D + + Sbjct: 61 IDVSE--DRDQPLVLINPEILWASPETRVGDEGCLSVPGIYDGVERSVAVKVQALDLDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q+ A+G+LA C+QHE+DHL G +F+++LS LKR+ I KM K + + Sbjct: 119 LQVHAAEGMLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIKQKKDEE 168 >gi|330447316|ref|ZP_08310966.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491507|dbj|GAA05463.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 169 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 107/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E I +I +ID+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R PMV INP+I + + +EGCLS+P RA V R+A ++V +D N Sbjct: 61 IDTSET--RDQPMVLINPEITEKRGEDGI-EEGCLSVPGARALVPRAAEVSVTALDRNGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + + Sbjct: 118 TICFDADELLAICIQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKRHNE 167 >gi|332533677|ref|ZP_08409536.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505] gi|332036841|gb|EGI73302.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505] Length = 168 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR V++ + +++ + ++ +MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MARLEVLRFPDERLRTVAKDVVQVDDTVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+II V +EGCLS+P+ A V R+ +TV ++ N + Sbjct: 61 IDVSE--ERNEPLVLINPQIIKKDGST-VSEEGCLSVPNSYAKVDRAETVTVAALNENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++ AD LLA C+QHELDHL G LFID+LS LKR I KK+ K + + Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAKFAE 167 >gi|187930742|ref|YP_001901229.1| peptide deformylase [Ralstonia pickettii 12J] gi|187727632|gb|ACD28797.1| peptide deformylase [Ralstonia pickettii 12J] Length = 171 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY G+GLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD+ V+ EGCLS+PD V R A + VR ++ Sbjct: 61 IDVSES--RDELRVFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + AD LLA C+QHE+DHL G +F+++LS LK+ I K+ K + Sbjct: 119 TFELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKHQR 165 >gi|295096931|emb|CBK86021.1| peptide deformylase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 169 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 113/169 (66%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSE--NRDERLVLINPEMLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|226329516|ref|ZP_03805034.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198] gi|225202702|gb|EEG85056.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198] Length = 174 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 113/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK++++I ++D+M E MY +GIGLAA Q+ + R++V Sbjct: 1 MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVNIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+++ + D + +EGCLSIP+ RA + R+ + VR +D N Q Sbjct: 61 IDVSET--RDERLVLINPELLDANGDTGI-EEGCLSIPEQRAFIPRAEHVKVRALDYNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKL 165 >gi|15676038|ref|NP_273168.1| peptide deformylase [Neisseria meningitidis MC58] gi|121633988|ref|YP_974233.1| peptide deformylase [Neisseria meningitidis FAM18] gi|161870945|ref|YP_001600125.1| peptide deformylase [Neisseria meningitidis 053442] gi|218767202|ref|YP_002341714.1| peptide deformylase [Neisseria meningitidis Z2491] gi|254805844|ref|YP_003084065.1| peptide deformylase [Neisseria meningitidis alpha14] gi|54036954|sp|P63916|DEF_NEIMB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|54040742|sp|P63915|DEF_NEIMA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512959|sp|A1KRE5|DEF_NEIMF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083074|sp|A9M464|DEF_NEIM0 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|7225325|gb|AAF40569.1| peptide deformylase [Neisseria meningitidis MC58] gi|120865694|emb|CAM09421.1| polypeptide deformylase [Neisseria meningitidis FAM18] gi|121051210|emb|CAM07481.1| polypeptide deformylase [Neisseria meningitidis Z2491] gi|161596498|gb|ABX74158.1| polypeptide deformylase [Neisseria meningitidis 053442] gi|254669386|emb|CBA08535.1| peptide deformylase [Neisseria meningitidis alpha14] gi|254671149|emb|CBA08206.1| polypeptide deformylase [Neisseria meningitidis alpha153] gi|254672814|emb|CBA06953.1| polypeptide deformylase [Neisseria meningitidis alpha275] gi|261391648|emb|CAX49096.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria meningitidis 8013] gi|308388328|gb|ADO30648.1| polypeptide deformylase [Neisseria meningitidis alpha710] gi|319411407|emb|CBY91818.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria meningitidis WUE 2594] gi|325129146|gb|EGC51994.1| peptide deformylase [Neisseria meningitidis N1568] gi|325131145|gb|EGC53866.1| peptide deformylase [Neisseria meningitidis OX99.30304] gi|325133177|gb|EGC55848.1| peptide deformylase [Neisseria meningitidis M6190] gi|325135219|gb|EGC57844.1| peptide deformylase [Neisseria meningitidis M13399] gi|325137169|gb|EGC59764.1| peptide deformylase [Neisseria meningitidis M0579] gi|325138789|gb|EGC61341.1| peptide deformylase [Neisseria meningitidis ES14902] gi|325141255|gb|EGC63754.1| peptide deformylase [Neisseria meningitidis CU385] gi|325143271|gb|EGC65609.1| peptide deformylase [Neisseria meningitidis 961-5945] gi|325145432|gb|EGC67708.1| peptide deformylase [Neisseria meningitidis M01-240013] gi|325197399|gb|ADY92855.1| peptide deformylase [Neisseria meningitidis G2136] gi|325199324|gb|ADY94779.1| peptide deformylase [Neisseria meningitidis H44/76] gi|325203055|gb|ADY98509.1| peptide deformylase [Neisseria meningitidis M01-240149] gi|325203229|gb|ADY98682.1| peptide deformylase [Neisseria meningitidis M01-240355] gi|325205203|gb|ADZ00656.1| peptide deformylase [Neisseria meningitidis M04-240196] gi|325207147|gb|ADZ02599.1| peptide deformylase [Neisseria meningitidis NZ-05/33] Length = 167 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I LI +M E MY + GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164 >gi|87121016|ref|ZP_01076908.1| peptide deformylase [Marinomonas sp. MED121] gi|86163854|gb|EAQ65127.1| peptide deformylase [Marinomonas sp. MED121] Length = 169 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 70/164 (42%), Positives = 100/164 (60%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR V++P+ N + ID+MLE MY +G+GLAA Q+ RLVV Sbjct: 1 MAVLPVLEYPDPRLRTVAKPVTDFNDALQVKIDDMLETMYDQNGLGLAATQVDFHQRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + +PMVFINP+ D + QEGCLS+P + + R+A + V +D N Sbjct: 61 MDFSE--EKNDPMVFINPRFEVLDDAANEEQEGCLSVPGFYEHIYRAARVKVIALDRNGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 GLLA C+QHE+DHL+G L +D+LS LKR+ I K+ K Sbjct: 119 EFEKKVAGLLAVCVQHEIDHLDGKLMVDYLSPLKRNRIKTKLVK 162 >gi|312797602|ref|YP_004030524.1| peptide deformylase [Burkholderia rhizoxinica HKI 454] gi|312169377|emb|CBW76380.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI 454] Length = 169 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+E+++ I L+ +M E MY+ G+GLAA Q+ V R+VV Sbjct: 3 MALLNILHYPDKRLHKVAKPVERVDERIRKLVADMAETMYAASGVGLAATQVDVHERVVV 62 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R VFINP+I+ SD+ + +EGCLS+P V+R+ + VR ++ N + Sbjct: 63 IDVSDT--RDALRVFINPEIVWSSDERDINEEGCLSVPRICDSVERAERVRVRALNENGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GLLA C+QHE+DHL G +F+++LS LK+ I M K + R Sbjct: 121 SFELECEGLLAICIQHEMDHLLGKVFVEYLSPLKQMRIKTTMKKFERAR 169 >gi|254419890|ref|ZP_05033614.1| peptide deformylase [Brevundimonas sp. BAL3] gi|196186067|gb|EDX81043.1| peptide deformylase [Brevundimonas sp. BAL3] Length = 192 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 82/189 (43%), Positives = 116/189 (61%), Gaps = 20/189 (10%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ P IL++VS+P+ ++ + L+D+MLE MY+ GIGLAAVQ+G L Sbjct: 1 MAIRRILTIDIPADLAILKQVSKPVAAVDDAVRALMDDMLETMYAAPGIGLAAVQVGALD 60 Query: 57 RLVVIDLQDHAH----------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 R++V+DL D RKNP F NP+I+ SD+ Y+EGCLSIP+Y Sbjct: 61 RVIVMDLGDRDGTICETEEEDTPEAAEARKNPRFFANPEILWTSDELYTYEEGCLSIPEY 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 V+R A + +RY++ + Q A+GL A C+QHE+DHLNG+LFIDHLSRLKRD Sbjct: 121 FDKVERPARVRIRYLNRDGQSVEEEAEGLYAVCIQHEMDHLNGVLFIDHLSRLKRDRAVT 180 Query: 161 KMSKLVQLR 169 K+ K + R Sbjct: 181 KVKKAARDR 189 >gi|322434765|ref|YP_004216977.1| peptide deformylase [Acidobacterium sp. MP5ACTX9] gi|321162492|gb|ADW68197.1| peptide deformylase [Acidobacterium sp. MP5ACTX9] Length = 188 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 1/165 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PDP+L + + + + L+D M E MY GIGLAA QIG+ R+ VID+ Sbjct: 24 VLKWPDPVLAKKGVEVTAFDDRLKTLVDEMFESMYEAQGIGLAAPQIGISERITVIDVSF 83 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + K+ + INP II + V +EGCLS+PD R V R+ ++ V+ D + Sbjct: 84 KKNPKDRLALINPVIIEA-EGKQVEEEGCLSLPDIREKVSRAGWVKVKAQDVTGTWFEVE 142 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 D LLA LQHE+DHL+G+LFID +SRLKR+++ +K+ K+ + + Sbjct: 143 GDELLARALQHEIDHLDGVLFIDRISRLKRELVLRKIKKMQKNGE 187 >gi|260599606|ref|YP_003212177.1| peptide deformylase [Cronobacter turicensis z3032] gi|260218783|emb|CBA34131.1| Peptide deformylase [Cronobacter turicensis z3032] Length = 177 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 115/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V+ P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 7 MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 66 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N + Sbjct: 67 IDVSE--NRDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRNGK 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS +KR I +K+ KL +++ Sbjct: 124 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 172 >gi|313667406|ref|YP_004047690.1| polypeptide deformylase [Neisseria lactamica ST-640] gi|313004868|emb|CBN86294.1| polypeptide deformylase [Neisseria lactamica 020-06] Length = 167 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164 >gi|157825411|ref|YP_001493131.1| peptide deformylase [Rickettsia akari str. Hartford] gi|166198521|sp|A8GMJ8|DEF_RICAH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157799369|gb|ABV74623.1| peptide deformylase [Rickettsia akari str. Hartford] Length = 175 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH + P + +NP++I S++ EGC+S+P R +V R I +RY+ Sbjct: 61 IDIKDHDSVERPKDFYPLFIVNPEMIEKSEELIKSNEGCISVPGQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|300692919|ref|YP_003753914.1| peptide deformylase [Ralstonia solanacearum PSI07] gi|299079979|emb|CBJ52656.1| peptide deformylase [Ralstonia solanacearum PSI07] Length = 169 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 104/169 (61%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ +++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAEVDGRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + Sbjct: 61 IDVSES--RDELRVFINPEILWASKERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 119 TFELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167 >gi|315635057|ref|ZP_07890338.1| peptide deformylase [Aggregatibacter segnis ATCC 33393] gi|315476319|gb|EFU67070.1| peptide deformylase [Aggregatibacter segnis ATCC 33393] Length = 170 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 112/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+P+ L+ V P+ +N D +ID+M + MY +GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPEEHLKVVCDPVLNVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N +V INP+I+ + + +EGCLSIP +RA V R +TV+ +D + + Sbjct: 61 IDIE--GDKQNQLVLINPEILDAEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K+ + + Sbjct: 118 EFTLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLMKVKKQME 167 >gi|119943871|ref|YP_941551.1| peptide deformylase [Psychromonas ingrahamii 37] gi|119862475|gb|ABM01952.1| peptide deformylase [Psychromonas ingrahamii 37] Length = 167 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+E+I ++ +NM+E MY +G+GLAA Q+ RLVV Sbjct: 1 MALLEVLRFPDKRLRTIAKPVEQITVELKKTAENMIETMYEEEGVGLAATQVNFHRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R MV INP I+ S + + +EGCLS+P+ A+VKR+ F+T+ Y+D + Sbjct: 61 IDVSEQ--RNQAMVIINPVIVEHSGE-EISEEGCLSVPETNAEVKRAEFVTLEYLDIEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q++ ADGLLA CLQHE+DHLNG LFID+LS LK+ I K+ KL + Sbjct: 118 QQVLKADGLLAVCLQHEIDHLNGKLFIDYLSPLKQKRIKTKLEKLQR 164 >gi|226942060|ref|YP_002797134.1| Def [Laribacter hongkongensis HLHK9] gi|226716987|gb|ACO76125.1| Def [Laribacter hongkongensis HLHK9] Length = 167 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V+RP++ ++ + LID+M E MY+ GIGLAA QI RLVV Sbjct: 1 MALLNILHYPDERLHTVARPVDVVDDALRRLIDDMAETMYAAHGIGLAATQIDYHRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + +V INP I + + VY+EGCLS+P V R+ +TV +D N Q Sbjct: 61 IDLSE--EHDGLLVLINPVITRKAGET-VYEEGCLSVPGIYDKVTRAETVTVEALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL+G +F++HLS++K+ I +K+ K + Sbjct: 118 PFSLDAEGLLAICIQHEIDHLDGKVFVEHLSQMKQSRIKQKLKKRERQ 165 >gi|253690150|ref|YP_003019340.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645184|sp|C6DFR5|DEF_PECCP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|251756728|gb|ACT14804.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 170 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP++I S D + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSE--ERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 TFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165 >gi|207741949|ref|YP_002258341.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum IPO1609] gi|206593335|emb|CAQ60262.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum IPO1609] Length = 174 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 6 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + Sbjct: 66 IDVSES--RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 124 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 172 >gi|119471681|ref|ZP_01614066.1| N-terminal methionine peptide deformylase [Alteromonadales bacterium TW-7] gi|119445460|gb|EAW26747.1| N-terminal methionine peptide deformylase [Alteromonadales bacterium TW-7] Length = 168 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 106/167 (63%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR +++ + ++ + ++ +MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MARLEVLRFPDERLRTIAKDVADVDDQVRQIVKDMLETMYDENGIGLAATQVNIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+II + +EGCLS+P+ A V R+ +TV ++ N + Sbjct: 61 IDVSE--ERDEPLVLINPQIIKKDGST-ISEEGCLSVPNSYAKVDRAETVTVAALNENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ AD LLA C+QHELDHL G LFID+LS LKR I KK+ K + Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164 >gi|83748633|ref|ZP_00945651.1| Peptide deformylase [Ralstonia solanacearum UW551] gi|83724677|gb|EAP71837.1| Peptide deformylase [Ralstonia solanacearum UW551] Length = 169 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + Sbjct: 61 IDVSES--RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 119 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167 >gi|157373176|ref|YP_001471776.1| peptide deformylase [Shewanella sediminis HAW-EB3] gi|157315550|gb|ABV34648.1| Peptide deformylase [Shewanella sediminis HAW-EB3] Length = 170 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 102/169 (60%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ + N+D+ IDNM + MY GIGLAA Q+ L++ Sbjct: 1 MSLLKVLRFPDERLRTIAKPVAEFNADLQAQIDNMFDTMYEEKGIGLAATQVDFHQHLII 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFIN +I D +EGCLS+P A+V R+ +T++ D Sbjct: 61 MDLQDDVER--PTVFINMEITAR-DGSCTNEEGCLSVPGIYANVDRAESVTIKAFDREGV 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGL A CLQHELDHLNG LF+D+LS LKR I +K+ K +L Sbjct: 118 EFTLDADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARLE 166 >gi|160896282|ref|YP_001561864.1| peptide deformylase [Delftia acidovorans SPH-1] gi|160361866|gb|ABX33479.1| peptide deformylase [Delftia acidovorans SPH-1] gi|162662271|gb|EDQ49167.1| predicted protein [Physcomitrella patens subsp. patens] Length = 170 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L V++P+ K++ I L+ +M MY G+GLAA Q V V Sbjct: 1 MSILPILCYPDPRLHTVAKPVAKVDDRIRQLVQDMYATMYDAQGVGLAATQ--VNVHERV 58 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + R P INP+++ S++ + +EGCLS+P V+RS I V+ +D N Sbjct: 59 VVVDVSEGRDEPFALINPELLWASEETQLGEEGCLSVPGIYDGVERSTAIKVKALDENGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +II A+G A C+QHE+DHL G +F+++LS LKR+ I K+ K + + Sbjct: 119 ERIIEAEGFKAICIQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQKQAE 168 >gi|299068355|emb|CBJ39579.1| peptide deformylase [Ralstonia solanacearum CMR15] Length = 169 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD V+ EGCLS+PD V+R + VR ++ + Sbjct: 61 IDISES--RDELRVFINPEIVWASDARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 119 SFELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167 >gi|17544789|ref|NP_518191.1| peptide deformylase [Ralstonia solanacearum GMI1000] gi|23396562|sp|Q8Y3B0|DEF1_RALSO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|17427078|emb|CAD13598.1| probable peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum GMI1000] Length = 169 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ S+ V+ EGCLS+PD V+R + VR ++ + Sbjct: 61 IDVSES--RDELRVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 119 SFELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLER 167 >gi|90581176|ref|ZP_01236975.1| peptide deformylase [Vibrio angustum S14] gi|90437697|gb|EAS62889.1| peptide deformylase [Vibrio angustum S14] Length = 169 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E I +I +ID+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV +NP+I + + +EGCLS+P R V R+A ++V +D + + Sbjct: 61 IDVSE--ERNQPMVLVNPEITEERGEDGI-EEGCLSVPTARGFVPRAAGVSVTALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 EYSFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKR 164 >gi|207727558|ref|YP_002255952.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum MolK2] gi|206590795|emb|CAQ56407.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum MolK2] Length = 174 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 6 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + Sbjct: 66 IDVSES--RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 124 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 172 >gi|253997550|ref|YP_003049614.1| peptide deformylase [Methylotenera mobilis JLW8] gi|253984229|gb|ACT49087.1| peptide deformylase [Methylotenera mobilis JLW8] Length = 166 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L V++P++++N+ + LID+M E MY+ GIGLAA Q+ +L++ Sbjct: 1 MAILDILNYPDPRLHTVAKPVKEVNAAVHRLIDDMAETMYAAPGIGLAATQVDQHVQLLL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + VFINPKI+ + VY+EGCLS+P V R+ I V + + + Sbjct: 61 VDTSET--KDQLQVFINPKILERDGE-QVYEEGCLSVPGVYESVTRAEKILVEALGKDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A GLL+ C+QHE+DHL G +F+++LS LKR+ I KM K + + Sbjct: 118 RFTLEAHGLLSVCIQHEMDHLQGKVFVEYLSPLKRNRIKNKMLKQQRGK 166 >gi|170724408|ref|YP_001758434.1| peptide deformylase [Shewanella woodyi ATCC 51908] gi|169809755|gb|ACA84339.1| peptide deformylase [Shewanella woodyi ATCC 51908] Length = 169 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 105/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ + N+D+ IDNM E MY GIGLAA Q+ ++L+V Sbjct: 1 MSLLKVLRFPDEKLRTIAKPVTEFNADLQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R P VFIN +I+ S F +EGCLS+P A+V+R+ +T++ +D Sbjct: 61 MDLQDEVER--PKVFINLEIVASSGHFE-NEEGCLSVPGIFANVERAEHVTIKALDREGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGL CLQHELDHL G LF+D+LS LKR I +K+ K + Sbjct: 118 EFTLEADGLFGICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARQE 166 >gi|237728621|ref|ZP_04559102.1| peptide deformylase [Citrobacter sp. 30_2] gi|283835704|ref|ZP_06355445.1| hypothetical protein CIT292_10096 [Citrobacter youngae ATCC 29220] gi|226909243|gb|EEH95161.1| peptide deformylase [Citrobacter sp. 30_2] gi|291068383|gb|EFE06492.1| peptide deformylase [Citrobacter youngae ATCC 29220] Length = 169 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 115/168 (68%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDEQLVLINPELLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|304388911|ref|ZP_07370958.1| peptide deformylase [Neisseria meningitidis ATCC 13091] gi|304337045|gb|EFM03232.1| peptide deformylase [Neisseria meningitidis ATCC 13091] gi|316985956|gb|EFV64895.1| peptide deformylase [Neisseria meningitidis H44/76] Length = 181 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I LI +M E MY + GIGLAA Q+ V R+VV Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 75 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178 >gi|323959563|gb|EGB55216.1| peptide deformylase [Escherichia coli H489] Length = 169 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 117/169 (69%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKNGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|256394328|ref|YP_003115892.1| peptide deformylase [Catenulispora acidiphila DSM 44928] gi|256360554|gb|ACU74051.1| peptide deformylase [Catenulispora acidiphila DSM 44928] Length = 213 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 3/171 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ I DP+L R P+E+ + + L+ +M MY+ +G+GLAA QIGV R+ V Sbjct: 8 TARPITIVGDPVLHRPCAPVEEFDDRLAGLVADMFASMYAAEGVGLAANQIGVPLRVFVY 67 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118 D QD ++ +NP + D EGCLS+P ++ R + V +D + Sbjct: 68 DCQDDDGVEHVGHVVNPVLAEQPPDRRQLDDSAEGCLSVPGPHHELARPDYARVTGVDLH 127 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + G A CLQHE DHL G L+ID LS+ +R + +M ++ + + Sbjct: 128 GEPITVEGTGYFARCLQHEFDHLEGRLYIDRLSKRQRKNVLAEMERMQEEK 178 >gi|121610998|ref|YP_998805.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] gi|121555638|gb|ABM59787.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] Length = 170 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 105/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKK-PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P++ +PDP L R++RP+ ++ I L D+ML MY GIGLAA Q+ V RL+ Sbjct: 1 MAILLPILRYPDPRLHRIARPVLAVDERIRALADDMLATMYQAQGIGLAATQVDVHERLL 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D+ D P+V INP+II S + + EGCLS+P DV+R + VR +D Sbjct: 61 VVDVSD--EHDQPLVLINPEIIWTSAEKQTHNEGCLSVPGIYDDVERFDAVHVRALDTRG 118 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q Q+I ADGLLA CLQHE+DHL G +F+ +LS LKR+ I +M K + Sbjct: 119 QPQVIEADGLLAMCLQHEMDHLQGKVFVQYLSPLKRNRIKTRMIKQQRE 167 >gi|326793337|ref|YP_004311157.1| peptide deformylase [Marinomonas mediterranea MMB-1] gi|326544101|gb|ADZ89321.1| Peptide deformylase [Marinomonas mediterranea MMB-1] Length = 168 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 105/158 (66%), Gaps = 2/158 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR V++ +E++ +I ID+ML+ MY GIGLAA Q+ + R+VV Sbjct: 1 MAVLPVLEYPDPKLRTVAKEVEQVTPEIQAYIDDMLDTMYDESGIGLAATQVDIHLRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R PMVFINP+ + D+ + +QEGCLS+P Y + R+A + V+ +D + + Sbjct: 61 MDHSE--ERNEPMVFINPEFVVLDDEPNEFQEGCLSVPGYYEHIYRAAKVKVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + D L+A C+QHE+DHL+G LF+D++S LKR+ I Sbjct: 119 PFEMEVDELMAVCVQHEIDHLDGKLFVDYISPLKRNRI 156 >gi|291278698|ref|YP_003495533.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1] gi|290753400|dbj|BAI79777.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1] Length = 172 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +P+PILRR S+ +++I+ ++ LID+M+E MY+ G+GLAA Q+GV R++VI Sbjct: 1 MVLKIVKYPNPILRRKSKEVKEIDGRVIKLIDDMVETMYAAPGLGLAAPQVGVNERILVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + INP I+ + + +EGCLSIP A+V+R+A + V+ +D + + Sbjct: 61 DPSAGEDKSKLIKIINPVIVEADGE-VIEEEGCLSIPGEYANVRRAAKVLVKGLDVDGKE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+ LLA QHE+DHLNG+LFID LS KR+ I K + K + D Sbjct: 120 VEIEAEDLLARAFQHEIDHLNGVLFIDRLSPTKRETIQKHIKKRIAAGD 168 >gi|283788078|ref|YP_003367943.1| polypeptide deformylase [Citrobacter rodentium ICC168] gi|282951532|emb|CBG91231.1| polypeptide deformylase [Citrobacter rodentium ICC168] Length = 169 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 114/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSE--NRDERLVLINPELLEKEGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|59802191|ref|YP_208903.1| peptide deformylase [Neisseria gonorrhoeae FA 1090] gi|239997891|ref|ZP_04717815.1| peptide deformylase [Neisseria gonorrhoeae 35/02] gi|240015128|ref|ZP_04722041.1| peptide deformylase [Neisseria gonorrhoeae DGI18] gi|240017578|ref|ZP_04724118.1| peptide deformylase [Neisseria gonorrhoeae FA6140] gi|240081720|ref|ZP_04726263.1| peptide deformylase [Neisseria gonorrhoeae FA19] gi|240116732|ref|ZP_04730794.1| peptide deformylase [Neisseria gonorrhoeae PID18] gi|240118954|ref|ZP_04733016.1| peptide deformylase [Neisseria gonorrhoeae PID1] gi|240124492|ref|ZP_04737448.1| peptide deformylase [Neisseria gonorrhoeae PID332] gi|240129167|ref|ZP_04741828.1| peptide deformylase [Neisseria gonorrhoeae SK-93-1035] gi|260439507|ref|ZP_05793323.1| peptide deformylase [Neisseria gonorrhoeae DGI2] gi|268593743|ref|ZP_06127910.1| peptide deformylase [Neisseria gonorrhoeae 35/02] gi|268597818|ref|ZP_06131985.1| peptide deformylase [Neisseria gonorrhoeae FA19] gi|268602403|ref|ZP_06136570.1| peptide deformylase [Neisseria gonorrhoeae PID18] gi|268604665|ref|ZP_06138832.1| polypeptide deformylase [Neisseria gonorrhoeae PID1] gi|268683123|ref|ZP_06149985.1| polypeptide deformylase [Neisseria gonorrhoeae PID332] gi|268687550|ref|ZP_06154412.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035] gi|75507292|sp|Q5F5P6|DEF_NEIG1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|59719086|gb|AAW90491.1| putative polypeptide deformylase [Neisseria gonorrhoeae FA 1090] gi|268547132|gb|EEZ42550.1| peptide deformylase [Neisseria gonorrhoeae 35/02] gi|268551606|gb|EEZ46625.1| peptide deformylase [Neisseria gonorrhoeae FA19] gi|268586534|gb|EEZ51210.1| peptide deformylase [Neisseria gonorrhoeae PID18] gi|268588796|gb|EEZ53472.1| polypeptide deformylase [Neisseria gonorrhoeae PID1] gi|268623407|gb|EEZ55807.1| polypeptide deformylase [Neisseria gonorrhoeae PID332] gi|268627834|gb|EEZ60234.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035] Length = 167 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY + GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDAVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164 >gi|300718672|ref|YP_003743475.1| peptide deformylase [Erwinia billingiae Eb661] gi|299064508|emb|CAX61628.1| Peptide deformylase [Erwinia billingiae Eb661] Length = 174 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 113/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D Sbjct: 61 IDVSENREER--LVLINPEMLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS +KR I +K+ KL + Sbjct: 118 SYELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165 >gi|84393441|ref|ZP_00992198.1| peptide deformylase [Vibrio splendidus 12B01] gi|86147129|ref|ZP_01065445.1| peptide deformylase [Vibrio sp. MED222] gi|84375957|gb|EAP92847.1| peptide deformylase [Vibrio splendidus 12B01] gi|85835013|gb|EAQ53155.1| peptide deformylase [Vibrio sp. MED222] Length = 170 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V++P++++ +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I + + +EGCLS+P RA V R+A +TV+ +D Sbjct: 61 IDISET--RDEPMVLINPEITDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDREGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|332702665|ref|ZP_08422753.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay] gi|332552814|gb|EGJ49858.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay] Length = 182 Score = 204 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +++ ++ +PD +L R S I +I ++ L +M E MY+ +GIGLAA Q+G RLVVI Sbjct: 1 MRRTILKYPDAVLARKSLEIGEITDELRQLAKDMAETMYTNEGIGLAAPQVGECCRLVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ R++ V +NPKI + V +EGCLS+ YR+DV RS +TV D + + Sbjct: 61 DITGPDKREDLRVLVNPKITAA-EGKVVSEEGCLSVSGYRSDVARSEKVTVEATDLDGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ADGLLA CLQHELDHL+G+LFID +SRLKR + KK+ KL + R Sbjct: 120 LSIEADGLLAVCLQHELDHLDGVLFIDRISRLKRSLYDKKVKKLQRER 167 >gi|311277759|ref|YP_003939990.1| peptide deformylase [Enterobacter cloacae SCF1] gi|308746954|gb|ADO46706.1| peptide deformylase [Enterobacter cloacae SCF1] Length = 169 Score = 204 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 115/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V+ P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRKVAEPVQEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R+ +V INP++I + + +EGCLS+P+ RA V R+ + VR +D + + Sbjct: 61 IDVSE--DREQQLVLINPELIEKDGETGI-EEGCLSVPEQRALVPRAETVKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +++ Sbjct: 118 PFELNADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMK 166 >gi|328880868|emb|CCA54107.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712] Length = 187 Score = 204 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 80/162 (49%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + DP+L P+ ++ L+++M MY+ +G+GLAA Q+GV R+ V D Sbjct: 13 VRAMTLLGDPVLHAPCAPVTDFGPELARLVEDMFATMYAANGVGLAANQVGVGLRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ D EGCLS+P A R V + + Sbjct: 73 CPDDEETRHLGHVVNPRLVAADGDVVRGPEGCLSLPGLEAPTPRYDRAVVEGVRLDGTPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G ++ DH++ +R + + + K Sbjct: 133 RVEGTGFFARCLQHETDHLEGGVYADHVTGWRRSRLLRAIRK 174 >gi|220933382|ref|YP_002512281.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7] gi|254767610|sp|B8GU11|DEF_THISH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219994692|gb|ACL71294.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7] Length = 178 Score = 204 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 112/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR+ + P++K++ +I L+D+M E MY GIGLAA Q+ V +++V Sbjct: 1 MAKLEILHFPDPRLRKRAVPVDKVDDEIRRLVDDMFETMYDAPGIGLAATQVNVQRQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ P+VFINP+I+ + QEGCLS+P Y V+R+ + VR +D N + Sbjct: 61 IDVSENN--DQPLVFINPEILDRVGE-EEMQEGCLSVPGYFETVRRADRVRVRALDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ KL + Sbjct: 118 PFELETDGLLAVCIQHEMDHLDGKLFVDYLSPLKRNRIQKKLEKLTRQ 165 >gi|156932268|ref|YP_001436184.1| peptide deformylase [Cronobacter sakazakii ATCC BAA-894] gi|166198516|sp|A7MPE9|DEF_ENTS8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|156530522|gb|ABU75348.1| hypothetical protein ESA_00039 [Cronobacter sakazakii ATCC BAA-894] Length = 171 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 115/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V+ P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS +KR I +K+ KL +++ Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 166 >gi|15603424|ref|NP_246498.1| peptide deformylase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431442|sp|P57948|DEF_PASMU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|12721951|gb|AAK03643.1| Def [Pasteurella multocida subsp. multocida str. Pm70] Length = 170 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 112/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++++PD L+ +++P+ ++N +I ++DNM E MY +GIGLAA Q+ + R++ Sbjct: 1 MARLNVLVYPDERLKIIAKPVVEVNDEIREIVDNMFETMYLEEGIGLAATQVNIHQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N V INP+II + + +EGCLS+P +R V R +T++ +D + + Sbjct: 61 IDVEGT--KENQYVLINPEIIDSCGETGI-EEGCLSLPGFRGFVPRKEKVTIKALDRHGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHLNGI+F D+LS LKR + +K+ KL + Sbjct: 118 EYTLSAEGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLLKLQKQ 165 >gi|289644962|ref|ZP_06477003.1| peptide deformylase [Frankia symbiont of Datisca glomerata] gi|289505235|gb|EFD26293.1| peptide deformylase [Frankia symbiont of Datisca glomerata] Length = 182 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+LR V+ P+ + ++ L+ +++E M+ G+GLAA Q+GV R+ Sbjct: 1 MTVREIRLLGDPVLRTVAEPVTTFDKELRRLVADLVESMHEAGGVGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP + FS++ +EGCLS+P ++KR + + + Sbjct: 61 YHVDGEVG-----HLVNPVLGPFSEELMDGEEGCLSLPGLSFELKRPERVIAVGQNVHGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I GLL+ C+QHE DHL+G+LFID L + K + + Sbjct: 116 PVTIEGSGLLSRCVQHETDHLDGVLFIDRLDPETKKAAMKAIREAEW 162 >gi|4699740|pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni2+ Containing Form, Cocrystallized With Inhibitor Polyethylene Glycol (Peg) gi|4699741|pdb|1ICJ|B Chain B, Pdf Protein Is Crystallized As Ni2+ Containing Form, Cocrystallized With Inhibitor Polyethylene Glycol (Peg) gi|4699742|pdb|1ICJ|C Chain C, Pdf Protein Is Crystallized As Ni2+ Containing Form, Cocrystallized With Inhibitor Polyethylene Glycol (Peg) gi|5821888|pdb|1BS4|A Chain A, Peptide Deformylase As Zn2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821889|pdb|1BS4|B Chain B, Peptide Deformylase As Zn2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821890|pdb|1BS4|C Chain C, Peptide Deformylase As Zn2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821891|pdb|1BS5|A Chain A, Peptide Deformylase As Zn2+ Containing Form gi|5821892|pdb|1BS5|B Chain B, Peptide Deformylase As Zn2+ Containing Form gi|5821893|pdb|1BS5|C Chain C, Peptide Deformylase As Zn2+ Containing Form gi|5821894|pdb|1BS6|A Chain A, Peptide Deformylase As Ni2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821895|pdb|1BS6|B Chain B, Peptide Deformylase As Ni2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821896|pdb|1BS6|C Chain C, Peptide Deformylase As Ni2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821900|pdb|1BS7|A Chain A, Peptide Deformylase As Ni2+ Containing Form gi|5821901|pdb|1BS7|B Chain B, Peptide Deformylase As Ni2+ Containing Form gi|5821902|pdb|1BS7|C Chain C, Peptide Deformylase As Ni2+ Containing Form gi|5821903|pdb|1BS8|A Chain A, Peptide Deformylase As Zn2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821904|pdb|1BS8|B Chain B, Peptide Deformylase As Zn2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821905|pdb|1BS8|C Chain C, Peptide Deformylase As Zn2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821915|pdb|1BSZ|A Chain A, Peptide Deformylase As Fe2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821916|pdb|1BSZ|B Chain B, Peptide Deformylase As Fe2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821917|pdb|1BSZ|C Chain C, Peptide Deformylase As Fe2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|7767088|pdb|1BSJ|A Chain A, Cobalt Deformylase Inhibitor Complex From E.Coli gi|7767089|pdb|1BSK|A Chain A, Zinc Deformylase Inhibitor Complex From E.Coli gi|16975207|pdb|1G27|A Chain A, Crystal Structure Of E.Coli Polypeptide Deformylase Complexed With The Inhibitor Bb-3497 gi|16975208|pdb|1G27|B Chain B, Crystal Structure Of E.Coli Polypeptide Deformylase Complexed With The Inhibitor Bb-3497 gi|16975209|pdb|1G27|C Chain C, Crystal Structure Of E.Coli Polypeptide Deformylase Complexed With The Inhibitor Bb-3497 gi|16975210|pdb|1G2A|A Chain A, The Crystal Structure Of E.Coli Peptide Deformylase Complexed With Actinonin gi|16975211|pdb|1G2A|B Chain B, The Crystal Structure Of E.Coli Peptide Deformylase Complexed With Actinonin gi|16975212|pdb|1G2A|C Chain C, The Crystal Structure Of E.Coli Peptide Deformylase Complexed With Actinonin gi|22219291|pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide Deformylase Complexed With Antibiotic Actinonin gi|22219292|pdb|1LRU|B Chain B, Crystal Structure Of E.Coli Peptide Deformylase Complexed With Antibiotic Actinonin gi|22219293|pdb|1LRU|C Chain C, Crystal Structure Of E.Coli Peptide Deformylase Complexed With Antibiotic Actinonin gi|62738424|pdb|1XEM|A Chain A, High Resolution Crystal Structure Of Escherichia Coli Zinc- Peptide Deformylase Bound To Formate gi|62738425|pdb|1XEN|A Chain A, High Resolution Crystal Structure Of Escherichia Coli Iron- Peptide Deformylase Bound To Formate gi|62738426|pdb|1XEO|A Chain A, High Resolution Crystals Structure Of Cobalt- Peptide Deformylase Bound To Formate gi|75766233|pdb|2AI8|A Chain A, E.Coli Polypeptide Deformylase Complexed With Sb-485343 gi|75766234|pdb|2AI8|B Chain B, E.Coli Polypeptide Deformylase Complexed With Sb-485343 gi|75766235|pdb|2AI8|C Chain C, E.Coli Polypeptide Deformylase Complexed With Sb-485343 Length = 168 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 116/167 (69%), Gaps = 3/167 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID Sbjct: 2 VLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVID 61 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 62 VSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 118 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 119 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165 >gi|220924615|ref|YP_002499917.1| peptide deformylase [Methylobacterium nodulans ORS 2060] gi|219949222|gb|ACL59614.1| peptide deformylase [Methylobacterium nodulans ORS 2060] Length = 173 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 79/167 (47%), Positives = 110/167 (65%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR S P+ I ++ L +MLE MY G+GLAA+QIG R+V Sbjct: 1 MTIRPLVILPDARLRVTSEPVGTITGEVRKLASDMLETMYDAPGVGLAAIQIGEPTRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +NP+V ++P+I+ S++ Y+EGCLSIP+Y A+V R + VR+ + + Sbjct: 61 VDTSKDKEARNPLVLLDPEIVWASEETRSYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDH+S+LKRD + KK +K + Sbjct: 121 VVEQEADGLLATCLQHEIDHLNGVLFIDHISKLKRDRVLKKFAKAAK 167 >gi|50122919|ref|YP_052086.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043] gi|81693081|sp|Q6D002|DEF_ERWCT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|49613445|emb|CAG76896.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043] Length = 169 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP++I S D + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSE--ERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 AFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165 >gi|306840629|ref|ZP_07473381.1| peptide deformylase [Brucella sp. BO2] gi|306289367|gb|EFM60603.1| peptide deformylase [Brucella sp. BO2] Length = 164 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + D+ L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L P +INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELDRTTG---PKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRLKR+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLKRERLIKRYEKLQR 164 >gi|297250811|ref|ZP_06934289.1| peptide deformylase [Neisseria polysaccharea ATCC 43768] gi|296837967|gb|EFH21905.1| peptide deformylase [Neisseria polysaccharea ATCC 43768] Length = 181 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ + L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDGRVRKLVADMFETMYEARGIGLAATQVDVHERVVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 75 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178 >gi|332830442|gb|EGK03070.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286] Length = 187 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 102/174 (58%), Gaps = 7/174 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ +LR+ SR I ++ LI+NM E MY+ DGIGLAA QIG+ RL VI Sbjct: 1 MILPIYLYGHSVLRKKSREISSDYPNLKELIENMFETMYNADGIGLAAPQIGLDIRLFVI 60 Query: 62 DLQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL+ A NP+ VFINP II + + +EGCLSIP V R+ I ++Y+ Sbjct: 61 DLEPLAE-DNPIYSGFKKVFINPVIIEETGEVVKMEEGCLSIPGINEGVDRNEKIRIQYL 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N D A C+QHE DH+ GILFID +S +++ +I K++ L++ R Sbjct: 120 DENFVSHDEVYDAFFARCIQHEYDHIEGILFIDKISGIRKQLIKSKLNNLIKGR 173 >gi|99034823|ref|ZP_01314739.1| hypothetical protein Wendoof_01000437 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 179 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 106/175 (60%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V Sbjct: 1 MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I SD+ + +EGCLSIP+ +KR ++TV Sbjct: 61 MDIQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHKIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K+ + Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKK 175 >gi|224585201|ref|YP_002639000.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469729|gb|ACN47559.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 164 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 112/159 (70%), Gaps = 3/159 (1%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ + +R Sbjct: 5 PDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--NR 62 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + ADGL Sbjct: 63 DERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEADGL 121 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 LA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 122 LAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 160 >gi|114327357|ref|YP_744513.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] gi|114315531|gb|ABI61591.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] Length = 205 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 72/165 (43%), Positives = 107/165 (64%), Gaps = 2/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++I P L+ +RP+ ++ + +L+ M MY GIGLAA QI L RL V+D+ Sbjct: 38 PILIAPHKTLKTRARPVTAGDASLIRDLVPRMFATMYKAPGIGLAAPQIDSLLRLAVVDV 97 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+V INP II S++ + +EGCLS+P+ ADV R A I +RY D + + Sbjct: 98 SPDDQKA-PLVLINPDIIARSEEMATREEGCLSLPNQYADVTRPARIKLRYEDLDGSRRE 156 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLATC+QHE+DHL+GILF+DHLS LKR+M+ ++++K + Sbjct: 157 MEADDLLATCIQHEIDHLDGILFVDHLSTLKRNMLMRRLAKEQRQ 201 >gi|58697042|ref|ZP_00372504.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans] gi|58698050|ref|ZP_00372974.1| peptide deformylase [Wolbachia endosymbiont of Drosophila ananassae] gi|225629944|ref|YP_002726735.1| polypeptide deformylase [Wolbachia sp. wRi] gi|254767611|sp|C0R5A2|DEF_WOLWR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|58535407|gb|EAL59482.1| peptide deformylase [Wolbachia endosymbiont of Drosophila ananassae] gi|58536692|gb|EAL59978.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans] gi|225591925|gb|ACN94944.1| polypeptide deformylase [Wolbachia sp. wRi] Length = 179 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 76/178 (42%), Positives = 107/178 (60%), Gaps = 8/178 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V Sbjct: 1 MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I SD+ + +EGCLSIP+ ++KR ++TV Sbjct: 61 VDVQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM K K+ + + Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAITKAQKIKKQHE 178 >gi|261866825|ref|YP_003254747.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391665|ref|ZP_06635999.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412157|gb|ACX81528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1] gi|290952199|gb|EFE02318.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 170 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 70/162 (43%), Positives = 108/162 (66%), Gaps = 3/162 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+P+ L+ V P+ ++N + +IDNM + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPEEHLKVVCDPVVEVNDNTRKIIDNMFDTMYQEGGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ ++N +V INP+I+ + + +EGCLSIP +RA V R +TV+ +D + + Sbjct: 61 IDIE--GDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ Sbjct: 118 EFTLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKL 159 >gi|167752475|ref|ZP_02424602.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216] gi|167659544|gb|EDS03674.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216] Length = 181 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V+F P+LR R I ++ LI++M + +G+GLAA QIG RL ++ Sbjct: 1 MIYPIVVFGAPVLREKCREIGPDYPEVKKLIEDMFLTLEEAEGVGLAAPQIGKSIRLFIV 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + FINP+I S++ +Y+EGCLS+P V+RS I +RY+D Sbjct: 61 DCTPWGEDHPELADYRRAFINPEIYEVSEETKLYEEGCLSLPGLHESVRRSLAIRMRYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N + GL A +QHE DHL G++F D LS L+R++I K+ L + R Sbjct: 121 ENFEPHDEEFTGLPAWVIQHEYDHLEGVVFTDRLSPLRRNLIKSKLMSLTKGR 173 >gi|194099884|ref|YP_002003021.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945] gi|291042744|ref|ZP_06568485.1| peptide deformylase [Neisseria gonorrhoeae DGI2] gi|293398236|ref|ZP_06642441.1| polypeptide deformylase [Neisseria gonorrhoeae F62] gi|193935174|gb|ACF30998.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945] gi|291013178|gb|EFE05144.1| peptide deformylase [Neisseria gonorrhoeae DGI2] gi|291611499|gb|EFF40569.1| polypeptide deformylase [Neisseria gonorrhoeae F62] gi|317165346|gb|ADV08887.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107] Length = 181 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY + GIGLAA Q+ V R+VV Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 75 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDAVTRAERVKVEALNEKGE 131 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178 >gi|42520067|ref|NP_965982.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila melanogaster] gi|81700107|sp|Q73IJ6|DEF_WOLPM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|42409804|gb|AAS13916.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 179 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V Sbjct: 1 MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I SD+ + +EGCLSIP+ ++KR ++TV Sbjct: 61 MDIQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K+ + Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKK 175 >gi|227328917|ref|ZP_03832941.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 170 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP++I S D + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSE--ERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 AFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165 >gi|77359005|ref|YP_338580.1| N-terminal methionine peptide deformylase [Pseudoalteromonas haloplanktis TAC125] gi|123587108|sp|Q3IDI2|DEF_PSEHT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|76873916|emb|CAI85137.1| N-terminal methionine peptide deformylase [Pseudoalteromonas haloplanktis TAC125] Length = 167 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 107/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++ + ++ + +I +MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MATLEVLRFPDERLRTIAQEVAHVDDQVRVIIKDMLETMYDENGIGLAATQVNIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+II D +V +EGCLS+P+ A V R+ +TV ++ + Sbjct: 61 IDVSE--ERNEPLVLINPQIIKK-DGTTVSEEGCLSVPNSYAKVDRAETVTVAALNEQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++ AD LLA C+QHELDHL G LFID+LS LKR I KK+ K + + Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAKFAE 167 >gi|294085060|ref|YP_003551820.1| peptide deformylase protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664635|gb|ADE39736.1| peptide deformylase protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 177 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 78/166 (46%), Positives = 109/166 (65%), Gaps = 1/166 (0%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ PDP+LR + + ++ I NL+D+M MY GIGLAA QI + RL+V+D Sbjct: 8 ILDIIKLPDPVLREKAVAVPEVTDGIRNLLDDMAVTMYDAPGIGLAAPQINISERLIVMD 67 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 INP+II S+D S+ +EGCLSIPD A+V R A +TVRY D + Q Sbjct: 68 C-GKDETPELYKMINPEIIETSEDKSILEEGCLSIPDQTAEVTRPATVTVRYTDIDGDTQ 126 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ A+GLLA C+QHE+DHLNG+LFIDH+SRLKRDMI +++ K ++ Sbjct: 127 MLTAEGLLAACVQHEIDHLNGVLFIDHISRLKRDMIIRRVMKEMRQ 172 >gi|170742368|ref|YP_001771023.1| peptide deformylase [Methylobacterium sp. 4-46] gi|168196642|gb|ACA18589.1| peptide deformylase [Methylobacterium sp. 4-46] Length = 173 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 80/167 (47%), Positives = 109/167 (65%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR S P+ I ++ L +MLE MY G+GLAA+Q+G R+V Sbjct: 1 MTIRPLVILPDARLRVTSSPVGTITGEVRKLAADMLETMYDAPGVGLAAIQVGEPTRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + P+V I+P+I+ S++ Y+EGCLSIP+Y A+V R + VR+ + + Sbjct: 61 IDTSKDKEARTPLVLIDPEIVWSSEETRAYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHELDHLNG+LFIDH+S+LKRD + KK +K + Sbjct: 121 TVEQEADGLLATCLQHELDHLNGVLFIDHISKLKRDRVMKKFAKAAK 167 >gi|146313352|ref|YP_001178426.1| peptide deformylase [Enterobacter sp. 638] gi|167012063|sp|A4WF95|DEF_ENT38 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145320228|gb|ABP62375.1| peptide deformylase [Enterobacter sp. 638] Length = 169 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 114/169 (67%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENREER--LVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL ++R Sbjct: 118 SFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 166 >gi|254467786|ref|ZP_05081192.1| peptide deformylase [beta proteobacterium KB13] gi|207086596|gb|EDZ63879.1| peptide deformylase [beta proteobacterium KB13] Length = 166 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 72/167 (43%), Positives = 106/167 (63%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +++ +E + L+ +M E MY + GIGLAA Q+ V R++V Sbjct: 1 MALLKILKYPDPRLHKIAEIVEVFDESTEKLVQDMAETMYESKGIGLAATQVDVHRRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D +K+ +V INPK+I F D Y EGCLS+P + VKR IT+ Y D Sbjct: 61 IDISD--DKKDLLVLINPKLIKF-DGQQEYDEGCLSVPGFFETVKRYENITISYQDLKGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + ADGLL+ C+QHE+DHL G +FI++LS+LK+ I KK+SKL + Sbjct: 118 IKTLEADGLLSVCIQHEMDHLVGKVFIEYLSQLKQQRIKKKISKLSR 164 >gi|332885374|gb|EGK05623.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836] Length = 187 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 102/173 (58%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V I K ++ LIDNM E MY+ DGIGLAA QIG+ RL VI Sbjct: 1 MILPIYLYGHPVLRKVGEDITKDYPNLGTLIDNMFETMYNADGIGLAAPQIGLAIRLFVI 60 Query: 62 DLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL+ A + VFINP+I+ S + +EGCLSIP V+R I ++Y+D Sbjct: 61 DLEPLAEDEPKYAGFKKVFINPRIVEESGEPVKLEEGCLSIPGINEMVERKERIRIQYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N + A C+QHE DH+ G+LF+D +S +++ +I K++ L++ R Sbjct: 121 ENFVAHDEVYEDFFARCIQHEYDHIEGVLFVDLISGIRKQLIKSKLNNLLKGR 173 >gi|16124527|ref|NP_419091.1| polypeptide deformylase [Caulobacter crescentus CB15] gi|221233212|ref|YP_002515648.1| peptide deformylase [Caulobacter crescentus NA1000] gi|23396553|sp|Q9ABF5|DEF_CAUCR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767574|sp|B8GYE3|DEF_CAUCN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|13421407|gb|AAK22259.1| polypeptide deformylase [Caulobacter crescentus CB15] gi|220962384|gb|ACL93740.1| peptide deformylase [Caulobacter crescentus NA1000] Length = 173 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 72/171 (42%), Positives = 111/171 (64%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ + L+++S P+E + ++ L+D+MLE MY GIGLAAVQ+G Sbjct: 1 MAIRRILTVDNAADLATLKKISTPVEAVTDELRALMDDMLETMYDAPGIGLAAVQVGEPV 60 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 R++V+DL K P F+NP+I+ S+D Y+EGCLS+P+Y +V+R + +T+RYM+ Sbjct: 61 RVIVMDLAREGEDKAPRYFVNPEILASSEDLQGYEEGCLSVPEYYDEVERPSKVTLRYMN 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL A C+QHE+DHL G+LFIDHLSRL+RD K+ K + Sbjct: 121 YQGETVVEEAEGLFAVCIQHEMDHLEGVLFIDHLSRLRRDRAMAKVKKARR 171 >gi|262040754|ref|ZP_06013985.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041898|gb|EEW42938.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 169 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 116/169 (68%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R+ +V INP+++ + + +EGCLSIP+ RA V R+ + +R +D N + Sbjct: 61 IDVSE--NREEQLVLINPEMLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNDK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|226313317|ref|YP_002773211.1| peptide deformylase [Brevibacillus brevis NBRC 100599] gi|226096265|dbj|BAH44707.1| peptide deformylase [Brevibacillus brevis NBRC 100599] Length = 158 Score = 203 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 94/155 (60%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDPILR + + K NS++ L+D+M + MY DG+GLAA Q+G+ R++V Sbjct: 1 MAIRTIVKHPDPILREKAMVVTKFNSNLHKLLDDMADTMYDADGVGLAAPQVGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D + INP+II + Y EGCLSIP + DV+R +I +R D N Sbjct: 61 MDCGD-----GLIEMINPEIIEHEGEQYDYPEGCLSIPGLQGDVRRHKWIKLRGHDRNGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + AD LL+ C QHE+DHLNG+LFID ++ + Sbjct: 116 VVELEADDLLSRCAQHEIDHLNGVLFIDVADKVYK 150 >gi|118578953|ref|YP_900203.1| peptide deformylase [Pelobacter propionicus DSM 2379] gi|118501663|gb|ABK98145.1| peptide deformylase [Pelobacter propionicus DSM 2379] Length = 172 Score = 203 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 1/158 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L++ S + I +I L+ +M E MY G+GLAA QIGV R+++I Sbjct: 1 MIRTILTYPNPELKKKSAAVTIITDEIRELVSDMTETMYHAPGVGLAAPQIGVHQRVIII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ H ++ INP I+ + S +EGCLS+P Y A+V+R A +TVR +D + Sbjct: 61 DVSAHDEPNELIIAINPVIVHAEGE-SYEEEGCLSVPKYAANVRRHASVTVRGLDLEGRE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 Q +A+GLLA QHE+DHL+G LF+DHLS LKRD+ Sbjct: 120 QTWHAEGLLAIAFQHEIDHLDGRLFVDHLSPLKRDLFQ 157 >gi|157828155|ref|YP_001494397.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|238650436|ref|YP_002916288.1| peptide deformylase [Rickettsia peacockii str. Rustic] gi|157800636|gb|ABV75889.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|238624534|gb|ACR47240.1| peptide deformylase [Rickettsia peacockii str. Rustic] Length = 175 Score = 203 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID+QDH P + +NP+II +++ EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|332974243|gb|EGK11176.1| peptide deformylase [Kingella kingae ATCC 23330] Length = 167 Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 101/170 (59%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ P+ L V++P+ +++ I L+ +M E MY+ GIGLAA Q+ V R+VV Sbjct: 1 MALLPILTHPNERLHIVAQPVVQVDDRIRTLVQDMAETMYAARGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + INP I + Y+EGCLS+P V R+ ITV ++D Sbjct: 61 IDLSE--EHNQLLALINPVITKKDGET-TYEEGCLSVPGIYDTVTRAKTITVEFLDTQGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + ADGLLA C+QHELDHL G LF+++LS LK++ I K+ K + R+ Sbjct: 118 KQSLDADGLLAICIQHELDHLAGKLFVEYLSPLKQNRIKTKLKK--RQRE 165 >gi|157830814|pdb|1DFF|A Chain A, Peptide Deformylase Length = 164 Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 70/166 (42%), Positives = 115/166 (69%), Gaps = 3/166 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID Sbjct: 2 VLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVID 61 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 62 VSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 118 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L Sbjct: 119 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164 >gi|325972108|ref|YP_004248299.1| peptide deformylase [Spirochaeta sp. Buddy] gi|324027346|gb|ADY14105.1| Peptide deformylase [Spirochaeta sp. Buddy] Length = 167 Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 67/164 (40%), Positives = 95/164 (57%), Gaps = 4/164 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +L +P+ K +S + L+D M E M DG+GLAA Q+GV RL VI +Q Sbjct: 3 DIYTLGDEVLTEKCQPVTKFDSALRILVDAMFETMAEADGVGLAAPQVGVNSRLFVIHIQ 62 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +R +INP+II S + +EGCLSIP DV+R A +TV+ D + + Sbjct: 63 GSENR----AYINPQIIETSIETDTSEEGCLSIPGVWHDVQRPARVTVQAQDVEGKVFTV 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA +QHE DHLNG+LFID L+ +R+ + K K +L Sbjct: 119 KAEGLLARAIQHEYDHLNGVLFIDRLNDEEREKMVKAYEKRAKL 162 >gi|283852905|ref|ZP_06370166.1| peptide deformylase [Desulfovibrio sp. FW1012B] gi|283571734|gb|EFC19733.1| peptide deformylase [Desulfovibrio sp. FW1012B] Length = 175 Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P P L + + P+ +I +I L M E MY+ GIGLAA Q+G RLVVI Sbjct: 1 MSLEILKYPHPTLAQKAAPVTEITPEIRELAAAMAETMYANQGIGLAAPQVGRSIRLVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL R+ M +NP I + + +EGCLS+ DYR +V R+A +TV+ D + Sbjct: 61 DLSGPDKREGLMTLVNPVITDPAGE-EEDEEGCLSVRDYRTNVVRAATVTVKATDLDGNP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA CLQHE+DHL+G+LFIDH+SRLKR M K++ + + Sbjct: 120 FCLEADGLLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWARQE 167 >gi|256830603|ref|YP_003159331.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028] gi|256579779|gb|ACU90915.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028] Length = 170 Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 106/169 (62%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +V +P+P+L + + P+ +I +I L MLE+MY+ GIGLAA Q+ RL+ + Sbjct: 1 MPRTIVTYPNPVLAKKAAPVVEITEEIRALAAEMLEIMYADKGIGLAAPQVAESIRLITV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL R++P VF+NP + + +EGCLS+ YR VKR+ + + D + + Sbjct: 61 DLSGPDKREDPHVFVNPVLSNLEGEVES-EEGCLSVVGYRTTVKRAERLHLSATDLDGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD L+A CLQHE+DHL+G+LFID +S+LKR + +K+ K ++ ++ Sbjct: 120 VEMDADDLMAICLQHEVDHLDGVLFIDKISKLKRTLYERKLKKWLKEKN 168 >gi|300741380|ref|ZP_07071401.1| peptide deformylase [Rothia dentocariosa M567] gi|300380565|gb|EFJ77127.1| peptide deformylase [Rothia dentocariosa M567] Length = 190 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI+ +P+L R + P+ + + L+ +M E M + G+GLAA QIGV R+ Sbjct: 1 MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +++ +NP K+ D +EGCLS P Y +KR+ ++TV Sbjct: 61 YQMENEDGVTPRGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D A G A C+QHE DHL+G L+++ L++ + K + + Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNKKWTSRMKKVVKR 169 >gi|190571318|ref|YP_001975676.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018714|ref|ZP_03334522.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238058217|sp|B3CMB1|DEF_WOLPP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|190357590|emb|CAQ55031.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995665|gb|EEB56305.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 179 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 74/175 (42%), Positives = 106/175 (60%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K P+VI PD L + + I I L+++M E MY +G+GLAAVQ+GVL R+ + Sbjct: 1 MSKLPIVIAPDERLTTRASEVIDITDKIKELVNDMFETMYYAEGLGLAAVQVGVLKRIFI 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I S + + +EGCLSIP+ ++KR ++TV Sbjct: 61 MDVQPEKAEDGPAGYESTGKFCMINPEITELSGEQVILKEGCLSIPEQSHEIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +Y + N + Q + A G LA C+QHELDHLNGIL++ HLS+LK DM KK K+ + Sbjct: 121 KYKNLNNEEQTLKASGWLARCIQHELDHLNGILYVRHLSKLKYDMAMKKAQKVKR 175 >gi|227539328|ref|ZP_03969377.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300] gi|227241010|gb|EEI91025.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300] Length = 192 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 98/175 (56%), Gaps = 8/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+LR+ ++ I++ +I LI NM + MY+ G+GLAA QIG+ R+ VI Sbjct: 1 MKLPIVAYGDPVLRKKTQEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLAIRVFVI 60 Query: 62 DLQDHAHRKN--------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D A + VFINP I+ + + + EGCLSIPD +V R A + + Sbjct: 61 DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Y+D N + I GL A +QHE DHL G LF D L LK+ M+ K+ + + Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKG 175 >gi|165932853|ref|YP_001649642.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|165907940|gb|ABY72236.1| peptide deformylase [Rickettsia rickettsii str. Iowa] Length = 175 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID+QDH P + +NP++I +++ EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIQDHDSVARPKDFYPLFIVNPEVIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|78484538|ref|YP_390463.1| peptide deformylase [Thiomicrospira crunogena XCL-2] gi|123755296|sp|Q31J84|DEF_THICR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78362824|gb|ABB40789.1| peptide deformylase [Thiomicrospira crunogena XCL-2] Length = 169 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 72/164 (43%), Positives = 100/164 (60%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V++PD LR V +P+ ++ ++ LID M MY GIGLAA Q+ V RL+V Sbjct: 1 MDKLDIVLYPDEGLREVCKPVPEMTDELDKLIDEMFYTMYDAPGIGLAAPQVAVQQRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + P+ +NP+II + ++EGCLSIP A V R + I VR MD + + Sbjct: 61 VDISET--KDEPIALLNPEIIKTAG-KITWEEGCLSIPGIYAKVDRPSDILVRGMDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LLA C+QHE+DHLNG LFIDHLS LKR +K K Sbjct: 118 TIEFEANELLAVCIQHEIDHLNGKLFIDHLSGLKRTRAIQKFKK 161 >gi|302381971|ref|YP_003817794.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264] gi|302192599|gb|ADL00171.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264] Length = 194 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 80/192 (41%), Positives = 112/192 (58%), Gaps = 22/192 (11%) Query: 1 MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ + IL++VS+P+ ++ + L+D+ML+ MY GIGLAAVQIG L Sbjct: 1 MAIRRILTIDNTADLAILKQVSKPVAVVDDAVRALMDDMLDTMYDAPGIGLAAVQIGELQ 60 Query: 57 RLVVIDLQD------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98 R+VV+DL D NP F+NP++I SD+ Y+EGCLSIP Sbjct: 61 RVVVMDLGDGPAPEAAEAAAEDEEGSEETRVPNPRFFVNPEVIWASDETFCYEEGCLSIP 120 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 +Y V+R A + V Y+D +GL A C QHELDHLNG+LFIDHLSRL+RD Sbjct: 121 EYFDQVERPARVRVAYLDRTGARIEGEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRA 180 Query: 159 TKKMSKLVQLRD 170 K+ K ++LR+ Sbjct: 181 MSKVKKTMRLRE 192 >gi|315125137|ref|YP_004067140.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp. SM9913] gi|315013650|gb|ADT66988.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp. SM9913] Length = 168 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 104/167 (62%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR +++ + ++ + ++ +MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MARLEVLRFPDERLRTIAKEVTVVDDQVREIVKDMLETMYDENGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+II V +EGCLS+P A V R+ +TV ++ + Sbjct: 61 IDVSE--ERNEPLVLINPQIIKKDGST-VSEEGCLSVPHSYAKVDRAETVTVAALNEEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I+ AD LLA C+QHELDHL G LFID+LS LKR I KK+ K + Sbjct: 118 EFILDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164 >gi|225024414|ref|ZP_03713606.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC 23834] gi|224942795|gb|EEG24004.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC 23834] Length = 167 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILRYPDPRLNLVAKPVEQVDERIKQLVADMAETMYEAKGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R V INP II + +Y+EGCLS+P V R+ I +D + Sbjct: 61 MDLSES--RDQLQVLINPVIIERDGET-IYEEGCLSVPGVYDKVTRAESIVAEALDAEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I+ADGL A C+QHE+DHL+G +F+ +LSRLK++ I KM KL + Sbjct: 118 PYTIHADGLQAICIQHEIDHLDGKVFVQYLSRLKQERIKTKMKKLDK 164 >gi|294789398|ref|ZP_06754635.1| peptide deformylase [Simonsiella muelleri ATCC 29453] gi|294482611|gb|EFG30301.1| peptide deformylase [Simonsiella muelleri ATCC 29453] Length = 171 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L V++P+ ++N I L+ +M E MY + GIGLAA Q+ V R+VV Sbjct: 1 MALLPILKYPDPKLHTVAKPVSEVNDRIKKLVADMAETMYESRGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + R + INP IIT D + Y+EGCLS+P V R+ +TV ++D + Sbjct: 61 IDLSE--ERNQLITLINP-IITHKDGETTYEEGCLSVPGVYDTVTRAERVTVEFLDADGH 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLA C+QHELDHL G +F+++LS LK++ I KM K + Sbjct: 118 AQKLDADGLLAICIQHELDHLQGKVFVEYLSPLKQNRIKTKMKKREREE 166 >gi|188535243|ref|YP_001909040.1| peptide deformylase [Erwinia tasmaniensis Et1/99] gi|238692005|sp|B2VK93|DEF_ERWT9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188030285|emb|CAO98174.1| Peptide deformylase [Erwinia tasmaniensis Et1/99] Length = 169 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 113/168 (67%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V I+P+++ S + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSE--DRDERLVLIDPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS +KR I +K+ KL + Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165 >gi|311113462|ref|YP_003984684.1| peptide deformylase [Rothia dentocariosa ATCC 17931] gi|310944956|gb|ADP41250.1| peptide deformylase [Rothia dentocariosa ATCC 17931] Length = 190 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI+ +P+L R + P+ + + L+ +M E M + G+GLAA QIGV R+ Sbjct: 1 MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +++ +NP K+ D +EGCLS P Y +KR+ ++TV Sbjct: 61 YQMENEDGVPARGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D A G A C+QHE DHL+G L+++ L++ + K + + Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNKKWTSRMKKVVKR 169 >gi|34580779|ref|ZP_00142259.1| polypeptide deformylase [Rickettsia sibirica 246] gi|28262164|gb|EAA25668.1| polypeptide deformylase [Rickettsia sibirica 246] Length = 176 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 2 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 61 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID+QDH P + +NP+II +++ EGC+S+P+ R +V R I +RY+ Sbjct: 62 IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 121 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 122 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 171 >gi|171057041|ref|YP_001789390.1| peptide deformylase [Leptothrix cholodnii SP-6] gi|170774486|gb|ACB32625.1| peptide deformylase [Leptothrix cholodnii SP-6] Length = 171 Score = 202 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +++RP+ +++ I L+ +M E MY GIGLAA Q+ V R++V Sbjct: 1 MSLLPILRYPDPRLNKIARPVIQVDERIRQLVSDMFETMYEARGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +P+V INP+I+ S++ V EGCLS+P V+R A + V +D N Q Sbjct: 61 IDVSE--ERNDPLVLINPRIVAASEEMMVGDEGCLSVPTIYDRVERHAQVQVEALDRNGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLL+ C+QHE+DHL G +F+++LS LKR+ I KM K + RD Sbjct: 119 RYEFEADGLLSVCVQHEMDHLLGKVFVEYLSPLKRNRIRSKMIK--RGRD 166 >gi|189426265|ref|YP_001953442.1| peptide deformylase [Geobacter lovleyi SZ] gi|189422524|gb|ACD96922.1| peptide deformylase [Geobacter lovleyi SZ] Length = 166 Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P++ FPDP+L++ S P+ I +I+ L +M E MY G+GLAA QIGVL R++VI Sbjct: 1 MIRPILAFPDPLLKQKSAPVTIITDEIIQLARDMAETMYDAPGVGLAAPQIGVLQRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + INP +I + + +EGCLS+PD+ A+VKR + V+ + Q Sbjct: 61 DVAAKNEPPQLITAINPVVI-HGEGETYEEEGCLSVPDFSANVKRHERVVVKGLSLEGQE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +I +ADGLLA QHE+DHL+GILF+D LS LKRD+ KK K Sbjct: 120 RIWHADGLLAVAFQHEIDHLDGILFVDRLSPLKRDLFVKKCKK 162 >gi|148262893|ref|YP_001229599.1| peptide deformylase [Geobacter uraniireducens Rf4] gi|146396393|gb|ABQ25026.1| peptide deformylase [Geobacter uraniireducens Rf4] Length = 171 Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 71/166 (42%), Positives = 107/166 (64%), Gaps = 1/166 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ FPDP L++ S+P+ IN+ ++ L+ +M E MY G+GLAA QIGV R+VVI Sbjct: 1 MIRKILTFPDPELKKKSQPVVVINNKVIELVRDMAETMYDAPGVGLAAPQIGVHQRIVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ +V INP II + S +EGCLSIP Y A+V+R + V+ ++ + + Sbjct: 61 DVAGKDDPPQLIVAINPVIIHADGE-SYEEEGCLSIPKYAANVRRHERVVVKALNLDGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLA QHE+DHL+GILFIDH+S LKR++ +K + ++ Sbjct: 120 ITCKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRRTLE 165 >gi|298370618|ref|ZP_06981933.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314] gi|298281228|gb|EFI22718.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314] Length = 167 Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++ + K++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKSVGKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164 >gi|333029959|ref|ZP_08458020.1| Peptide deformylase [Bacteroides coprosuis DSM 18011] gi|332740556|gb|EGJ71038.1| Peptide deformylase [Bacteroides coprosuis DSM 18011] Length = 186 Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 70/172 (40%), Positives = 97/172 (56%), Gaps = 5/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR V++ I ++ LI NM E M DGIGLAA QIG+ RLVV+ Sbjct: 1 MILPIYVYGQPVLREVAKDITPEYPNLKELIQNMFETMEHADGIGLAAPQIGLSIRLVVM 60 Query: 62 DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + + VFINP I D EGCLS+P DV R + V Y D Sbjct: 61 DLDVLSEDFPELKGFRKVFINPYIEEVDGDDITMGEGCLSLPGIGEDVTRPDVVYVTYQD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 N + +G LA +QHE DHL+GI+FIDH+S L++ MI K++K+V+ Sbjct: 121 ENFEKHTEKVEGYLARVMQHEFDHLDGIMFIDHISPLRKQMIRSKLNKMVKG 172 >gi|170288957|ref|YP_001739195.1| peptide deformylase [Thermotoga sp. RQ2] gi|281412566|ref|YP_003346645.1| peptide deformylase [Thermotoga naphthophila RKU-10] gi|238688844|sp|B1LB14|DEF_THESQ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|170176460|gb|ACB09512.1| peptide deformylase [Thermotoga sp. RQ2] gi|281373669|gb|ADA67231.1| peptide deformylase [Thermotoga naphthophila RKU-10] Length = 164 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 96/162 (59%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D+ Sbjct: 4 IRVFGDPVLRKRAKPVTKFDDNLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVG- 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I+ + V +EGCLS P+ +++RS I V+Y + ++ Sbjct: 63 ----NGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G A QHE DHLNG+L ID +S KR ++ KK+ + + Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160 >gi|134097125|ref|YP_001102786.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|291009658|ref|ZP_06567631.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|133909748|emb|CAL99860.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] Length = 191 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +R +E + ++ L+D+M E M + G+GLAA QIGV RL V Sbjct: 1 MAVHPIRIVGDPVLHNPTRLVENFDDELRTLVDDMFETMAAASGVGLAANQIGVDLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D ++ V +NP + T D EGCLS+P R+ + V Sbjct: 61 YDCPDDEGVQHRGVVVNPVLETTEVPESMPDPEEDWEGCLSVPGESFPTGRADWAKVTGS 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + G A CLQHE DHL+G L++ L K + + Sbjct: 121 DVDGNPVEVEGTGFFARCLQHETDHLDGFLYLSRLVGRHARAAKKTVKR 169 >gi|157964273|ref|YP_001499097.1| peptide deformylase [Rickettsia massiliae MTU5] gi|157844049|gb|ABV84550.1| Polypeptide deformylase [Rickettsia massiliae MTU5] Length = 176 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 105/170 (61%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 2 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHKDGAGLAAVQVGVLKRILV 61 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH P + +NP+II S++ EGC+S+P+ R +V R I +R + Sbjct: 62 IDIKDHDSVARPKDFYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRCL 121 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 122 DYHGKSQELQANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 171 >gi|295691230|ref|YP_003594923.1| peptide deformylase [Caulobacter segnis ATCC 21756] gi|295433133|gb|ADG12305.1| peptide deformylase [Caulobacter segnis ATCC 21756] Length = 173 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ + +L+++S P+E + ++ L+D+MLE MY GIGLAAVQ+G Sbjct: 1 MAIRRILTVDNAADLAVLKKISTPVEVVTDELRALMDDMLETMYDAPGIGLAAVQVGEPV 60 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 R++ +DL P F+NP+I+ S++ VY+EGCLS+P+Y +V+R A +T+RYM+ Sbjct: 61 RVITMDLAREGEEPAPRYFVNPEILASSEEMFVYEEGCLSVPEYFDEVERPAKVTLRYMN 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL A C+QHE+DHL G+LFIDHLSRL+RD K+ K + Sbjct: 121 YQGETVVEEAEGLFAVCIQHEMDHLEGVLFIDHLSRLRRDRAIAKVKKARR 171 >gi|257091704|ref|YP_003165345.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044228|gb|ACV33416.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 167 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 104/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR+V+ ++KI+ I L +M E MY GIGLAA Q+ V R++V Sbjct: 1 MSLLPILRFPDPRLRKVAARVDKIDDGIRRLARDMAETMYEAPGIGLAATQVDVHARVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + INP+I+ D V +EGCLS+P V+R+ + VRY D + Sbjct: 61 VDASET--RDQLLTLINPEILQQ-DGLQVCEEGCLSVPGVYDKVERAEHVVVRYQDLDGA 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + A GLLA CLQHE+DHL G +F++HLS+LK+ I K++K ++ Sbjct: 118 EQTVDATGLLAVCLQHEIDHLQGRVFVEHLSQLKQLRIRNKLAKQARI 165 >gi|229586451|ref|YP_002844952.1| peptide deformylase [Rickettsia africae ESF-5] gi|228021501|gb|ACP53209.1| Polypeptide deformylase [Rickettsia africae ESF-5] Length = 175 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID+QDH P + +NP++I +++ EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIQDHDSVARPKDFYPLFIVNPEMIEQAEELVTANEGCISLPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|325105696|ref|YP_004275350.1| peptide deformylase [Pedobacter saltans DSM 12145] gi|324974544|gb|ADY53528.1| peptide deformylase [Pedobacter saltans DSM 12145] Length = 188 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 5/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+L++V+ IEK ++ LI+NM E M + +G+GLAA QIG+ RL VI Sbjct: 1 MKLPIVAYGDPVLKKVAVDIEKDYPELPALIENMFETMDNANGVGLAAPQIGLSIRLFVI 60 Query: 62 DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D A +FINP I S + EGCLSIPD R DV R IT+ Y D Sbjct: 61 DATPFADEDASLASFKKIFINPIITDESGKEWKFNEGCLSIPDIREDVSRKEQITISYFD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 N H +GL A +QHE DH+ G LF D +S LK+ M+ K+ +V+ Sbjct: 121 ENWIHHEDTFNGLAARVIQHEYDHIQGKLFTDRISPLKKAMLKGKLDAIVKG 172 >gi|323173923|gb|EFZ59551.1| peptide deformylase [Escherichia coli LT-68] gi|325498855|gb|EGC96714.1| hypothetical protein ECD227_2952 [Escherichia fergusonii ECD227] Length = 164 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 114/160 (71%), Gaps = 3/160 (1%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ + +R Sbjct: 5 PDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--NR 62 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + ADGL Sbjct: 63 DERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGL 121 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 122 LAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161 >gi|58584374|ref|YP_197947.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75508016|sp|Q5GTG9|DEF_WOLTR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|58418690|gb|AAW70705.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 179 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 109/175 (62%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V+ PD L + + IN I L+++M E MY+ +G+GLAAVQIGVL R+ V Sbjct: 1 MPKLSIVVAPDERLTTRASEVTGINDKIKELVNDMFETMYNAEGLGLAAVQIGVLKRIFV 60 Query: 61 IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q + P+ INP+I SD+ + +EGCLSIP+ +++R ++TV Sbjct: 61 MDIQLEDIKGEPVGYESTGKFCMINPEITELSDEQVILKEGCLSIPEQSHEIRRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K + Sbjct: 121 KYKDLNNKEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAEKFKR 175 >gi|15892201|ref|NP_359915.1| peptide deformylase [Rickettsia conorii str. Malish 7] gi|20137640|sp|Q92IZ1|DEF1_RICCN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|15619334|gb|AAL02816.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] Length = 175 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID+QDH P + +NP+II +++ EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + + + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSRELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|300790374|ref|YP_003770665.1| polypeptide deformylase [Amycolatopsis mediterranei U32] gi|299799888|gb|ADJ50263.1| putative polypeptide deformylase [Amycolatopsis mediterranei U32] Length = 192 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 6/172 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI +P+L + +R I + + + L+D+M E MY+ +G+GLAA QIG+ R+ V Sbjct: 1 MTIHPIVIAGEPVLHQPTREITEFDEKLRTLVDDMFETMYAAEGVGLAANQIGLDLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D ++ V +NP +I D EGCLS P R+ + V Sbjct: 61 YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGRAKWAKVTGS 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D + + G A CLQHE DHL+G +++D L + KKM K + Sbjct: 121 DIDGHPIEVEGTGYFARCLQHETDHLDGYIYLDRLVG-RHARAAKKMLKSNK 171 >gi|290477161|ref|YP_003470076.1| peptide deformylase [Xenorhabdus bovienii SS-2004] gi|289176509|emb|CBJ83318.1| peptide deformylase [Xenorhabdus bovienii SS-2004] Length = 170 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 113/169 (66%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK+++ I ++ID+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHYPDERLRTIAKPVEKVDAGIQSIIDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ + +EGCLS+P+ RA V R + ++ +D + Q Sbjct: 61 IDVSE--NRDQRLVLINPELMNEVGATGI-EEGCLSVPEQRAFVPRFEQVKIKALDYHGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LFID+LS LKR I +K+ K+ +LR Sbjct: 118 QFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKVEKIDRLR 166 >gi|239948084|ref|ZP_04699837.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis] gi|241563350|ref|XP_002401667.1| polypeptide deformylase, putative [Ixodes scapularis] gi|215501859|gb|EEC11353.1| polypeptide deformylase, putative [Ixodes scapularis] gi|239922360|gb|EER22384.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis] Length = 175 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+M++ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVKAPDERLKQKSQPVLEFTDQTRKFMDDMIKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH + P + +NP+II S++ EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIKDHDSVERPKDLYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|291285975|ref|YP_003502791.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] gi|290883135|gb|ADD66835.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] Length = 175 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 65/165 (39%), Positives = 101/165 (61%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + FPD +LR + P++ I+ I L+DNM+E M++ G+GLAA Q+G+ RL+VI Sbjct: 1 MILEVKTFPDKVLRIKAEPVDSIDESITELLDNMVETMHARSGVGLAAPQVGISKRLIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + INP+II+ + V +EGCLSIP V+R+ +TV+ MD N + Sbjct: 61 DTSAGENEGMLLRVINPEIISAEGE-QVGEEGCLSIPGEYEPVRRAEKVTVKAMDENGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + A+G LA QHE+DHL+G+LFID L K+D + K + + + Sbjct: 120 YTMEAEGFLARAFQHEIDHLDGVLFIDRLPSYKKDTLKKTIKRRI 164 >gi|300774181|ref|ZP_07084049.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] gi|300758992|gb|EFK55820.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] Length = 192 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 97/175 (55%), Gaps = 8/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+LR+ + I++ +I LI NM + MY+ G+GLAA QIG+ R+ VI Sbjct: 1 MKLPIVAYGDPVLRKKTIEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLPIRVFVI 60 Query: 62 DLQDHAHRKN--------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D A + VFINP I+ + + + EGCLSIPD +V R A + + Sbjct: 61 DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Y+D N + I GL A +QHE DHL G LF D L LK+ M+ K+ + + Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKG 175 >gi|59713150|ref|YP_205926.1| peptide deformylase [Vibrio fischeri ES114] gi|197334102|ref|YP_002157326.1| peptide deformylase [Vibrio fischeri MJ11] gi|75506885|sp|Q5E1Q8|DEF_VIBF1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690282|sp|B5FCW6|DEF_VIBFM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|59481251|gb|AAW87038.1| peptide deformylase [Vibrio fischeri ES114] gi|197315592|gb|ACH65039.1| peptide deformylase [Vibrio fischeri MJ11] Length = 170 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 3/157 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MALLEVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP I S D + +EGCLS+P + V RSA ++V +D + Sbjct: 61 IDVSET--RDEPMVLINPVITQKSGDDGI-EEGCLSVPGAKGLVPRSAEVSVSALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 AD LLA C+QHELDHL+G LF+D+LS LKR Sbjct: 118 EFSFDADDLLAICVQHELDHLDGKLFVDYLSPLKRKR 154 >gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex aeolicus VF5] gi|6014949|sp|O66847|DEF_AQUAE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2983203|gb|AAC06802.1| polypeptide deformylase [Aquifex aeolicus VF5] Length = 169 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 2/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+P+ IL++ + ++ I+ ++ NLI +M + MY +G+GLAA QIGV ++VI Sbjct: 1 MVRDIVIYPNEILKKPTEKVDVIDKEVKNLIRDMFDTMYEAEGVGLAANQIGVPLSVMVI 60 Query: 62 DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +V INP+I + Y+EGCLS P +V+R + V ++ + + Sbjct: 61 DTSPKEDAPPLKLVLINPEIKE-GEGKIKYKEGCLSFPGLSVEVERFQKVKVNALNEHGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G A QHELDHL GI F+D L +R M +K KL++ R Sbjct: 120 PVELTLEGFPAIVFQHELDHLKGITFVDRLKGWRRRMALEKYQKLLKSR 168 >gi|317486329|ref|ZP_07945159.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6] gi|316922399|gb|EFV43655.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6] Length = 172 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V +P+P+L + S PI ++ +I L + M E MY +DGIG+AA Q+G L RLV+ Sbjct: 1 MSLK-IVTYPNPLLGKPSLPITEVTDEIRKLAEEMTEAMYKSDGIGIAAPQVGQLIRLVI 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ID+ R+ MV +NP D + +EGCLS+PDYR+ V+R+A + V D + Sbjct: 60 IDVTGPEKREGKMVLVNPVWTPLPDAGYVESEEGCLSVPDYRSKVRRTARVHVEATDLDG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 AD +LA C+QHE+DHL+G LFID +SRLKR M K+ K + Sbjct: 120 NPVSFDADDILAICVQHEIDHLDGKLFIDRISRLKRIMFENKLKKGTRQ 168 >gi|306836177|ref|ZP_07469161.1| peptide deformylase [Corynebacterium accolens ATCC 49726] gi|304567898|gb|EFM43479.1| peptide deformylase [Corynebacterium accolens ATCC 49726] Length = 184 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + ++ DP+L + I ++ + L MLE M + G+GLAA Q+G+L R+ V Sbjct: 1 MAELDIRLYGDPVLSSRAEEITTFDTGLRTLAQTMLETMDAAGGVGLAANQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP +D EGCLSIP AD R + V D + Sbjct: 61 YDCSPI-QAGLRGVLINPVWTPLGEDMQTGPEGCLSIPGISADTPRYNRVFVSGRDVEGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GLLA C+QHE DHL+G+LF+ L R + + + Sbjct: 120 PVGMVASGLLARCIQHETDHLDGVLFLRRLGDADRKAAMRTIRE 163 >gi|124265476|ref|YP_001019480.1| peptide deformylase [Methylibium petroleiphilum PM1] gi|124258251|gb|ABM93245.1| peptide deformylase [Methylibium petroleiphilum PM1] Length = 170 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L V++P+++++ + L+D+MLE MY G+GLAA Q+ V R++V Sbjct: 1 MPLLDILRYPDPRLHTVAKPVKEVDERVRQLVDDMLETMYDAQGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R P V INP+++ SD+ V EGCLS+P V R A +TVR + + Q Sbjct: 61 IDVSD--DRNEPRVLINPELLQVSDEMVVGDEGCLSVPQIYDKVPRHAKVTVRALGRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ LL+ C+QHE+DHL G +F+++LS LKR+ I KM K + Sbjct: 119 AYQFDAEELLSVCVQHEMDHLMGKVFVEYLSPLKRNRIKSKMLKKTR 165 >gi|67458716|ref|YP_246340.1| peptide deformylase [Rickettsia felis URRWXCal2] gi|67004249|gb|AAY61175.1| Polypeptide deformylase [Rickettsia felis URRWXCal2] Length = 175 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+M++ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMVKTMYHEDGGGLAAVQVGVLKRIMV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH + P + +NP+II S++ EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIKDHDPIERPKDFYPLFIVNPEIIEKSEELITANEGCISVPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170 >gi|261823200|ref|YP_003261306.1| peptide deformylase [Pectobacterium wasabiae WPP163] gi|261607213|gb|ACX89699.1| peptide deformylase [Pectobacterium wasabiae WPP163] Length = 170 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++ ++++N+DI ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRITAQSVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP++I S + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSE--ERDQRLVLINPELIEKSGETGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 VFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165 >gi|15644409|ref|NP_229461.1| peptide deformylase [Thermotoga maritima MSB8] gi|3023626|sp|P96113|DEF_THEMA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|4982236|gb|AAD36728.1|AE001808_3 polypeptide deformylase [Thermotoga maritima MSB8] gi|1772608|emb|CAA71356.1| polypeptide deformylase [Thermotoga maritima] Length = 164 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 96/162 (59%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D+ Sbjct: 4 IRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVG- 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I+ + V +EGCLS P+ +++RS I V+Y + ++ Sbjct: 63 ----NGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G A QHE DHLNG+L ID +S KR ++ KK+ + + Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160 >gi|126348457|emb|CAJ90180.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC 23877] Length = 240 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 78/165 (47%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL I DP+L + ++ L++++ MY+ G+GLAA QIG R+ V D Sbjct: 52 VRPLRILGDPVLHAPCEEVTDFGPELAALVEDLFATMYAAHGVGLAANQIGEPVRVFVYD 111 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 112 CPDDEDERHLGHVVNPRLVETGGVVVRGAEGCLSLPGLEAGTERHDEAVVTGFTVTGEPV 171 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + G A CLQHE DHL G +++D L+ +R + ++ ++ Sbjct: 172 TVRGTGFFARCLQHECDHLEGGIYVDRLTGWRRRKVLRRAARASW 216 >gi|313648791|gb|EFS13231.1| peptide deformylase [Shigella flexneri 2a str. 2457T] gi|332749748|gb|EGJ80163.1| peptide deformylase [Shigella flexneri 4343-70] gi|332766530|gb|EGJ96737.1| peptide deformylase [Shigella flexneri 2930-71] gi|332998300|gb|EGK17901.1| peptide deformylase [Shigella flexneri VA-6] Length = 164 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 114/160 (71%), Gaps = 3/160 (1%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ + +R Sbjct: 5 PDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--NR 62 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + + A+GL Sbjct: 63 DERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAEGL 121 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 122 LAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161 >gi|304415447|ref|ZP_07396096.1| peptide deformylase [Candidatus Regiella insecticola LSR1] gi|304282711|gb|EFL91225.1| peptide deformylase [Candidatus Regiella insecticola LSR1] Length = 200 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 112/174 (64%), Gaps = 8/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR++++P+EKI+++I ++D+M + +Y+ +GIGLAA Q+ + +++V Sbjct: 24 MPILKILHFPDVQLRKIAKPVEKIDANIERIVDDMFDTIYAEEGIGLAATQVNIHKQIIV 83 Query: 61 IDLQDHAHRKN-------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 I + D + + P+V INP+++ S + + +EGCLSIP R VKRS + +R Sbjct: 84 IHIPDDSDQNERIEAHYRPLVLINPELLEESGETGI-KEGCLSIPGVREWVKRSERVKIR 142 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +D + + ADGLLA C+QHE+DHL G LFID+LS LK I KK+ K Q Sbjct: 143 ALDRDGNSFTLEADGLLAICIQHEMDHLKGKLFIDYLSPLKFQRIQKKIRKKAQ 196 >gi|145590257|ref|YP_001156854.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048663|gb|ABP35290.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 171 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 111/168 (66%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ ++++ I ++ +M + MY G+GLAA Q+ + R+VV Sbjct: 1 MALLTVLCYPDQRLHKVAKPVAQVDARIQKIVADMADTMYDAPGVGLAATQVDIHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + MVFINP+I+ S + ++EGCLS+P++ +V+R A I V+ ++ + Sbjct: 61 IDVSD--DQNELMVFINPEIVWASPEKKSWREGCLSVPEFYDEVERPAEIRVKALNLKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA CLQHELDHL G +F+++LS LK+ I++KM K ++ Sbjct: 119 EFELEADGLLAVCLQHELDHLQGKVFVEYLSMLKQVRISQKMKKRLKE 166 >gi|302530616|ref|ZP_07282958.1| polypeptide deformylase [Streptomyces sp. AA4] gi|302439511|gb|EFL11327.1| polypeptide deformylase [Streptomyces sp. AA4] Length = 188 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I +P+L + +R I + + + L+++M E MY+ +G+GLAA QIG+ R+ V Sbjct: 1 MTVHPICIAGEPVLHQPTREITEFDDKLAALVEDMFETMYAAEGVGLAANQIGLDLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D ++ V +NP +I D EGCLS P R+ + V Sbjct: 61 YDCPDDEGVEHKGVVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGRAKWAKVTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + G A CLQHE DHL+G +++D L K + K Sbjct: 121 DVEGNPIEVEGTGYFARCLQHETDHLDGFIYLDRLVGRHARAAKKMLKK 169 >gi|315224454|ref|ZP_07866281.1| peptide deformylase [Capnocytophaga ochracea F0287] gi|314945475|gb|EFS97497.1| peptide deformylase [Capnocytophaga ochracea F0287] Length = 196 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 93/180 (51%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+V I + LI NM + M + G+GLAA Q+G+ RL V+ Sbjct: 1 MVLPIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVV 60 Query: 62 DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + FIN KI+ + D + EGCLSIP R DV R Sbjct: 61 DASPFADDDELSEDEQTFLKGFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQ 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D + Q + GL A +QHE DH+ GILF D LS KR +I K++ + + + Sbjct: 121 ITIEYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGK 180 >gi|239932667|ref|ZP_04689620.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291441025|ref|ZP_06580415.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672] gi|291343920|gb|EFE70876.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672] Length = 181 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 81/168 (48%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+LR R + ++ L++++ MY+ G+GLAA QIG R+ V D Sbjct: 13 VRPLTLLGDPVLRAPCREVTDFGPELARLVEDLFATMYAARGVGLAANQIGEPLRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 73 CPDDEDVRHLGHVVNPRLVETDGVVVRGPEGCLSLPGLEAGTERHDHAVVEGFTVTGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++ G A CLQHE DHL G L+ D L+ + + +++ + R+ Sbjct: 133 TVHGTGFFARCLQHECDHLEGRLYADRLTGWRHRRLMRQVKRASWNRE 180 >gi|148270260|ref|YP_001244720.1| peptide deformylase [Thermotoga petrophila RKU-1] gi|166198525|sp|A5ILS1|DEF_THEP1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|147735804|gb|ABQ47144.1| peptide deformylase [Thermotoga petrophila RKU-1] Length = 164 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 96/162 (59%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D+ Sbjct: 4 IRVFGDPVLRKRAKPVTKFDDNLEKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVG- 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I+ + V +EGCLS P+ +++RS I VRY + ++ Sbjct: 63 ----NGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVRYQNTKGEYVEEV 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G A QHE DHLNG+L ID +S KR ++ KK+ + + Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160 >gi|213963665|ref|ZP_03391916.1| peptide deformylase [Capnocytophaga sputigena Capno] gi|213953660|gb|EEB64991.1| peptide deformylase [Capnocytophaga sputigena Capno] Length = 193 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+V I ++ LI NM + M G+GLAA Q+G+ RL V+ Sbjct: 1 MVLPIIGYGDPVLRKVGEDITPDYPELKALIANMYDTMRHAYGVGLAAPQVGLAIRLFVV 60 Query: 62 DLQDHAHRKNPMV------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + FIN KI + D + EGCLSIP R DV R Sbjct: 61 DASPFAEDDDLTAEEQAFLKTFQKTFINAKITEETGDKWNFNEGCLSIPGVREDVSRHKQ 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y+D + + Q + DGL A +QHE DH+ GILF D LS K+ +I K++ +++ + Sbjct: 121 ITIEYLDEDFKPQTLTLDGLAARIVQHEYDHIEGILFTDKLSAFKKQLIKTKLNNIMKGK 180 >gi|116747597|ref|YP_844284.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB] gi|158512342|sp|A0LEJ7|DEF_SYNFM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116696661|gb|ABK15849.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB] Length = 170 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 1/158 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +PDPILR+ + +E I+ ++ LID+M E MY GIGLAA Q+G L+V Sbjct: 1 MAILDICTYPDPILRQKAASVENIDEALIKLIDDMTETMYEAPGIGLAANQVGRSLSLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQ +V INP+I+ + ++EGCLS+P+Y + VKR A + VR + + Sbjct: 61 VDLQRQDEEHGLIVLINPQIVATQGEI-TWEEGCLSVPEYFSAVKRHAEVVVRGYGRDGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A GLLA LQHE+DHL G LFID L+ + RD+ Sbjct: 120 EMEIQAGGLLAVALQHEIDHLEGRLFIDRLNPITRDIF 157 >gi|89890524|ref|ZP_01202034.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7] gi|89517439|gb|EAS20096.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7] Length = 196 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+V++ I ++ +++NM E MY G+GLAA Q+G+ R+ ++ Sbjct: 1 MIYPIVAYGDPVLRKVAKDITPDYPNLDKVLENMWETMYGASGVGLAAPQVGMPIRIFLV 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D FIN I+ + + + EGCLSIP+ R DV R Sbjct: 61 DTSPFGDDPELTPEEQKELGSFKKAFINAHIVEENGEEWAFNEGCLSIPNVREDVFRPEE 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +T+RY D N + GL+A +QHE DH+ GILF D +S LK+ +I K++ + + + Sbjct: 121 VTIRYCDENFKEVTETYTGLMARVIQHEYDHIEGILFTDKISSLKKRLIKGKLANISKGK 180 >gi|325000006|ref|ZP_08121118.1| peptide deformylase [Pseudonocardia sp. P1] Length = 182 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + ++++ L+ ++ + M++ G GLAA QIGV R+ V Sbjct: 1 MSIQPVRLFGDPVLRTRATEVTDFDAELRKLVADLTDTMHAEGGAGLAAPQIGVSRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + A INP ++ V EGCLSIP D +R + R D + + Sbjct: 61 YECDGFAG-----HLINPTWEAVGEEEQVGPEGCLSIPGLGFDCRRKLTVVGRGWDMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q++ LLA C+QHE DHL+G+LF+D L R +++ + + Sbjct: 116 PQVVEGSELLARCIQHETDHLDGVLFVDRLDAETRKRAMREIREASWFGE 165 >gi|82701528|ref|YP_411094.1| peptide deformylase [Nitrosospira multiformis ATCC 25196] gi|82409593|gb|ABB73702.1| peptide deformylase [Nitrosospira multiformis ATCC 25196] Length = 191 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++ P+ ++ +I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 25 MALLKILQYPDERLHTIAAPVPEVTDEIRVLVQDMAETMYAAPGVGLAATQVDVHKRVIV 84 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +V INP+I T + S Y+EGCLS+P V R+A ITV ++ + + Sbjct: 85 IDVSNT--HDQLLVLINPEITTHEGE-SDYEEGCLSVPGIFGKVPRAAQITVEALNKDGE 141 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHE+DHL G +F+++ SR+K+ I K K + Sbjct: 142 RFTLDADGLLAVCIQHEMDHLLGRVFVEYWSRMKQSRIQAKFRKQRR 188 >gi|325983533|ref|YP_004295935.1| peptide deformylase [Nitrosomonas sp. AL212] gi|325533052|gb|ADZ27773.1| peptide deformylase [Nitrosomonas sp. AL212] Length = 167 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 67/164 (40%), Positives = 102/164 (62%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V+ P+ +I I LI++M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MAILKILQYPDEKLHTVAAPVSQITDKIRTLINDMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R + +V INP+I T S+ S Y+EGCLS+P V+R+ + VR ++ + Sbjct: 61 IDTSEA--RNDLLVLINPEI-TASNGISDYEEGCLSVPGIYGKVQRAESVKVRALNAQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ ADGLLA C+QHE+DHL G +F+++ SRLK+ K+ K Sbjct: 118 SFVLDADGLLAVCIQHEMDHLAGKVFVEYWSRLKQVRTLAKLKK 161 >gi|251797740|ref|YP_003012471.1| peptide deformylase [Paenibacillus sp. JDR-2] gi|247545366|gb|ACT02385.1| peptide deformylase [Paenibacillus sp. JDR-2] Length = 161 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 85/148 (57%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDP+LR ++ + K NS++ L+ +M E MY DG+GLAA QIG+ R++V Sbjct: 1 MAIRIIVKEPDPVLRETAKEVTKFNSNLQKLLKDMAETMYDADGVGLAAPQIGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + +NP I+ + V EGCLSIP+ DVKR I + D Sbjct: 61 VDIGDETG---LISMVNPVIVENEGE-QVGPEGCLSIPNLNGDVKRYERIVINGQDGEGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + A G LA QHE+DHLNGILF D Sbjct: 117 PFTVEASGFLAVAFQHEIDHLNGILFTD 144 >gi|291514572|emb|CBK63782.1| peptide deformylase [Alistipes shahii WAL 8301] Length = 181 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+VI+ D +LRR PI D+ L ++M + +G+GLAA QIG RL ++ Sbjct: 1 MIYPIVIYGDEVLRRKCEPIAPDYPDVKKLAEDMFLTLEEAEGVGLAAPQIGKDIRLFIV 60 Query: 62 DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D A F+NP+I FS++ Y EGCLS P ADV RS I +RYMD Sbjct: 61 DCTPWAEEDPSCADYKRAFVNPEIYEFSEEKKTYNEGCLSFPGIHADVARSLSIRMRYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + GL A +QHE DH+ G++F D ++ L+R ++ K+ L + + Sbjct: 121 TDFVEHDEEFTGLKAWVIQHEYDHIEGVVFTDRIAPLRRQLLKSKLLNLAKGK 173 >gi|296125655|ref|YP_003632907.1| peptide deformylase [Brachyspira murdochii DSM 12563] gi|296017471|gb|ADG70708.1| peptide deformylase [Brachyspira murdochii DSM 12563] Length = 189 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 105/167 (62%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + LVI+ D L++VS IEKI+ +I+ LID+M E MY G+GLAAVQIG+L RL+VI Sbjct: 1 MLRELVIYGDERLQQVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGILKRLIVI 60 Query: 62 DLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D P + INP+II ++ + +EGCLS P+ R DV R I V+Y+D Sbjct: 61 SVPDFDDETKPDFKLALINPEIIWHGEEKEILEEGCLSFPEIRDDVARYKEIKVKYLDKE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 QI+ A+G +A LQHE+DH NGI FID L ++ + +++ L Sbjct: 121 GNEQILEAEGYIAKVLQHEIDHTNGISFIDRLESYQKRRLKRELKDL 167 >gi|242277625|ref|YP_002989754.1| peptide deformylase [Desulfovibrio salexigens DSM 2638] gi|242120519|gb|ACS78215.1| peptide deformylase [Desulfovibrio salexigens DSM 2638] Length = 170 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 97/166 (58%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K ++ +P+ L+ V +E++ ++ +IDNM+E MY DG+GLAA Q+GV RL+VI Sbjct: 1 MKLDILAYPEESLKEVCSRVEEVTPELKEIIDNMIETMYEDDGVGLAAPQVGVQKRLIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D R + V INP+I+ S +E CLS P ++ +KR +TV D Sbjct: 61 DPSGPKERTDLQVIINPEIVEKSSQKVDSEEACLSCPGFKCVIKRHETVTVTGTDPEGND 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I AD LA LQHE+DHL+G L +D + RLKR M KK+ K ++ Sbjct: 121 VRIEADDFLAIVLQHEIDHLDGTLIVDRVGRLKRAMYDKKVKKWLK 166 >gi|325955519|ref|YP_004239179.1| peptide deformylase [Weeksella virosa DSM 16922] gi|323438137|gb|ADX68601.1| Peptide deformylase [Weeksella virosa DSM 16922] Length = 190 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 11/178 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DPILR+ + IE+ + LI+NM + MY ++G+GLAA QIG R+ V+ Sbjct: 1 MVLPIIAYGDPILRKKTALIEQDYPHLTELIENMFDTMYDSNGVGLAAPQIGKSIRMFVV 60 Query: 62 DLQDHAH-----------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D + A +FINPK I D + EGCLSIP+ DV R I Sbjct: 61 DCRPFAEDEDNDEEKETLENFKKIFINPKKIETFGDDWKFTEGCLSIPNIHEDVTRPDGI 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 T+ Y+D N GL A +QHE DHL+G LFID+LS K+ +I+ K+ + + Sbjct: 121 TLTYLDENFVEHTESFTGLPARVIQHEYDHLDGKLFIDYLSSFKKKLISNKLKNISKG 178 >gi|255529965|ref|YP_003090337.1| peptide deformylase [Pedobacter heparinus DSM 2366] gi|255342949|gb|ACU02275.1| peptide deformylase [Pedobacter heparinus DSM 2366] Length = 186 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 2/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P++ + DP+L++V PIE+ D+ LI NM E MY+ G+GLAA Q+G+ RL ++ Sbjct: 1 MKLPIIAYGDPVLKKVCTPIEQTYPDLKQLISNMFETMYNAHGVGLAAPQVGLPIRLFIV 60 Query: 62 DLQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D KN VFIN +I+ + + + EGCLSIPD R DV R I ++Y D + Sbjct: 61 DTGADEGDKNKFKKVFINAEILEETGEPWAFNEGCLSIPDIREDVMRKPNIRIKYYDEHW 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G+ A +QHE DH+ G LF D LS L++ M+ K+ + + Sbjct: 121 ELHEEEVSGMPARVIQHEYDHIEGKLFTDTLSLLRKTMLKSKLDAISKG 169 >gi|52426256|ref|YP_089393.1| peptide deformylase [Mannheimia succiniciproducens MBEL55E] gi|81691285|sp|Q65QF2|DEF_MANSM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|52308308|gb|AAU38808.1| Def protein [Mannheimia succiniciproducens MBEL55E] Length = 171 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ ++ P+ + N ++ ID+M E MY +GIGLAA Q+ V R++ Sbjct: 1 MSVLNVLIYPDERLKTIAEPVTEFNDELQTFIDDMFETMYQEEGIGLAATQVDVHKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +V INP+++ + + +EGCLS+P R V R +TV+ ++ + Sbjct: 61 IDIT--GEKTEQLVLINPELLDG-EGETGIEEGCLSLPGLRGFVPRKEKVTVKALNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ KL + Sbjct: 118 EFTLHADGLLAICIQHEIDHLNGIVFADYLSPLKRNRMKEKLVKLQKQ 165 >gi|256819049|ref|YP_003140328.1| peptide deformylase [Capnocytophaga ochracea DSM 7271] gi|256580632|gb|ACU91767.1| peptide deformylase [Capnocytophaga ochracea DSM 7271] Length = 196 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 93/180 (51%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+V I + LI NM + M + G+GLAA Q+G+ RL V+ Sbjct: 1 MVLPIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVV 60 Query: 62 DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + FIN KI+ + D + EGCLSIP R DV R Sbjct: 61 DASPFADDDELSEEEQTFLKDFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQ 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D + Q + GL A +QHE DH+ GILF D LS KR +I K++ + + + Sbjct: 121 ITIEYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGK 180 >gi|225619787|ref|YP_002721044.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1] gi|254767571|sp|C0QZQ2|DEF_BRAHW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225214606|gb|ACN83340.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1] Length = 187 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + LVI+ D L++VS IEKI+ +I+ LID+M E MY G+GLAAVQIGVL RLVVI Sbjct: 1 MLRELVIYGDERLQKVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGVLKRLVVI 60 Query: 62 DLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D + P + INP+II +D+ +EGCLS P+ R DV R I V+Y+D Sbjct: 61 SVPDFDDEEKPDFKLALINPEIIWHNDETESLEEGCLSFPEIRDDVARYTQIKVKYLDRE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 QI+ A+ +A LQHE+DH NGI FID L ++ + +++ +L Sbjct: 121 GNEQILDAENYIAKVLQHEIDHTNGISFIDRLESYQKRRLKRELKEL 167 >gi|167648525|ref|YP_001686188.1| peptide deformylase [Caulobacter sp. K31] gi|189083067|sp|B0T1S9|DEF_CAUSK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167350955|gb|ABZ73690.1| peptide deformylase [Caulobacter sp. K31] Length = 173 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 67/171 (39%), Positives = 103/171 (60%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ + +L++VS+ + ++ + L+D+MLE MY GIGLAAVQ+G L Sbjct: 1 MAIRRILTVDNAADLAVLKQVSKDVPAVDDALRGLMDDMLETMYDAPGIGLAAVQVGELV 60 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++V+DL P F+NPKI S++ Y+EGCLS+P+ V+R A + + Y++ Sbjct: 61 NVIVMDLAREGEEPAPRYFVNPKITWASEELFEYEEGCLSVPEVYDAVERPAKVKISYLN 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A+ L A C+QHE+DHL G+LFIDHLSRLKRD K+ K + Sbjct: 121 YQGEAVEEDAEELFAVCIQHEMDHLKGVLFIDHLSRLKRDRAISKVKKARR 171 >gi|227503564|ref|ZP_03933613.1| peptide deformylase [Corynebacterium accolens ATCC 49725] gi|227075600|gb|EEI13563.1| peptide deformylase [Corynebacterium accolens ATCC 49725] Length = 171 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + ++ DP+L + I +S + L NML+ M + G+GLAA Q+G+L R+ V Sbjct: 1 MAELDIRLYGDPVLSSRAEEITTFDSSLRTLAQNMLDTMDAAGGVGLAANQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP +D V EGCLSIP AD R + V D + Sbjct: 61 YDCSPI-QAGLRGVLINPVWTPLGEDMQVGPEGCLSIPGISADTPRHNRVFVSGRDVEGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GLLA C+QHE DHL+G+LF+ L R + + + Sbjct: 120 PVGMVASGLLARCIQHETDHLDGVLFLRRLGDADRKAAMRTIRE 163 >gi|110637113|ref|YP_677320.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406] gi|123163813|sp|Q11X86|DEF_CYTH3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|110279794|gb|ABG57980.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406] Length = 184 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L++V++ IEK + D++ + +M E M + G+GLAA Q+ + R+ VI Sbjct: 1 MIYPIVAYGDPVLKKVAQDIEKGSLDVVKMSADMFETMENAHGVGLAAPQVALNLRMFVI 60 Query: 62 D---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D FINP I D Y+EGCLSIP RADV R A + +RY D + Sbjct: 61 DTSVFDDEKITPVRKTFINPVIEEEWGDEWPYEEGCLSIPGVRADVYRPANLRIRYFDTD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + DG+ A +QHE DH+ G+LF+DHLS +K+ ++ K++ + + Sbjct: 121 WKEHVEEFDGMTARVIQHEYDHIEGVLFVDHLSSIKKRLLKGKLTNISKG 170 >gi|254476440|ref|ZP_05089826.1| peptide deformylase [Ruegeria sp. R11] gi|214030683|gb|EEB71518.1| peptide deformylase [Ruegeria sp. R11] Length = 169 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 1/167 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V +PDP+L + P+ I + L +ML+ MY G GLAA Q+GVL R+ V Sbjct: 1 MAVRPIVAWPDPVLSTPASPVIAITD-VAALAQDMLDTMYGAPGRGLAAPQVGVLQRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + P++ INP+I SD EGCLSIP V+RS ++ + + D Sbjct: 60 MDTTWKDGTRAPLICINPEIKDRSDRHVSGPEGCLSIPGVSLTVERSEWVDLEWSDLQGV 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DG A C+QHE DHL+GI+ D +S + R K + V+ Sbjct: 120 RHCRRFDGFDAICIQHEYDHLDGIVTFDRVSAVARAEAEKTYNSYVE 166 >gi|88811384|ref|ZP_01126639.1| polypeptide deformylase [Nitrococcus mobilis Nb-231] gi|88791273|gb|EAR22385.1| polypeptide deformylase [Nitrococcus mobilis Nb-231] Length = 177 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 97/151 (64%), Gaps = 3/151 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP LR ++P+EK+ ++ L+D++ E MY GIGLAA Q+ + +R++V Sbjct: 1 MAILDILHYPDPQLRIRAQPVEKVTDEVRRLVDDLFETMYDAPGIGLAATQVNIHWRVLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + P+ FINP+I+ + QEGCLS+P Y V+R+ ++ V D + + Sbjct: 61 VDITEA--KNEPLAFINPQILERKGE-EEMQEGCLSVPGYFDTVRRAEWVKVHAQDRSGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + DGLLA C+QHE+DHL G LF+D+LS Sbjct: 118 PFELETDGLLAVCIQHEIDHLEGKLFVDYLS 148 >gi|73666676|ref|YP_302692.1| peptide deformylase [Ehrlichia canis str. Jake] gi|72393817|gb|AAZ68094.1| peptide deformylase [Ehrlichia canis str. Jake] Length = 185 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 14/181 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L S + +++ + L+D+M E M+ G+GLAAVQ+G+ R++V Sbjct: 1 MSVLPIVTVPDKRLSLCSEEVREVDQSVKKLVDDMFEAMHVNKGVGLAAVQVGIHKRVLV 60 Query: 61 IDLQDHAHR--------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 +D+ + P INPKI+ S + +EGCLS+PDY V R Sbjct: 61 VDVPEEFRETDDITSQIEGYELCGGPYCIINPKIVDASQEKVTLREGCLSVPDYFDYVVR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++TV+Y+D N II A G LA CL+HE+DHLNGI+F+ +LS+ KRD K+ K+ Sbjct: 121 PQYVTVQYLDYNGNECIIKAQGWLARCLEHEIDHLNGIVFLKYLSKFKRDFAIGKVKKMR 180 Query: 167 Q 167 + Sbjct: 181 K 181 >gi|38233909|ref|NP_939676.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129] gi|38200170|emb|CAE49851.1| Putative peptide deformylase [Corynebacterium diphtheriae] Length = 169 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+L S +E +S I NL+++MLE M + G+GLAA Q+GV R+ V Sbjct: 1 MAIRDIRLFGDPVLTTKSSDVEVFDSSIRNLVNDMLETMDAAGGVGLAANQVGVTKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H INP +D + EGCLSIPD + + +R ++V D + Sbjct: 61 YDCS-HIEDGLRGHIINPVWEPIGEDIQIGPEGCLSIPDVQEETERWMTVSVSGRDVDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GL+A C+QHE DHL+G+LF+ L ++ R ++ K Sbjct: 120 PISLVASGLMARCIQHETDHLDGVLFLRKLDKVHRKDAMAQIRK 163 >gi|302549859|ref|ZP_07302201.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302467477|gb|EFL30570.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 199 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 80/167 (47%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + ++ L++++ MY+ G+GLAA QIG R+ V D Sbjct: 31 VRPLTLHGDPVLHTPCAEVTDFGPELARLVEDLFATMYAAQGVGLAANQIGEPLRVFVFD 90 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 91 CPDDEDVRHLGHVVNPRLVETDGVVIRGPEGCLSLPGLEAGTERYDHAVVEGFTMTGEPV 150 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++ G A CLQHE DHL G ++ DHLS + + +++++ R Sbjct: 151 TLHGTGFFARCLQHEYDHLEGRIYADHLSGWRHRKLMRQVARASWCR 197 >gi|222099700|ref|YP_002534268.1| Peptide deformylase [Thermotoga neapolitana DSM 4359] gi|254767608|sp|B9K7G9|DEF_THENN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|221572090|gb|ACM22902.1| Peptide deformylase [Thermotoga neapolitana DSM 4359] Length = 164 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 94/162 (58%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +F DP+LR+ ++P+ K + + I+ M+E MY DG+GLAA Q+G+ R V+D+ Sbjct: 4 VRVFGDPVLRKRAKPVTKFDEALKRTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVG- 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I+ S + + +EGCLS P+ +++RS + VRY + + Sbjct: 63 ----NGPVAVINPEILEASPETEIAEEGCLSFPEIFVEIERSKRVKVRYQNVRGEFVEEE 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G A QHE DHLNG+L ID + KR ++ K++ + + Sbjct: 119 LEGYPARVFQHEFDHLNGVLIIDRIKPAKRLLLRKRLMDIAK 160 >gi|269127211|ref|YP_003300581.1| peptide deformylase [Thermomonospora curvata DSM 43183] gi|268312169|gb|ACY98543.1| peptide deformylase [Thermomonospora curvata DSM 43183] Length = 181 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+ +F DP+LR + P++ + ++ L+ ++ + M G GLAA Q+GV R+ Sbjct: 1 MAVKPIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMIDASGAGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++D +NP + S+D +EGCLSIP R+ + + + Sbjct: 61 YCVEDRLG-----HLVNPTLD-LSEDQEEDEEGCLSIPGLTFPTPRAKRAVAKGFNMYGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LLA C+QHE DHL+GILFID + +R K + + + Sbjct: 115 PITLEGTDLLARCVQHETDHLDGILFIDRMDPEQRKAAMKLIRQAEWFGE 164 >gi|300722039|ref|YP_003711319.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] gi|297628536|emb|CBJ89108.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] Length = 168 Score = 199 bits (508), Expect = 7e-50, Method: Composition-based stats. Identities = 70/171 (40%), Positives = 100/171 (58%), Gaps = 5/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PD LR+ + + + L+D+MLE MY+T +GIGLAA Q+G ++ Sbjct: 1 MAILDILTIPDERLRQKCVDVTDFDK-VQTLVDDMLETMYATDNGIGLAAPQVGRKEAVL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL R P V +NPKI+ + V QEGCLSIP Y ADV+R + V D Sbjct: 60 VIDLSP--DRDKPTVLVNPKIVEK-ERRVVNQEGCLSIPGYYADVERFEKVKVEAFDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ++ L+ +QHE+DHLNG++FID+LS L+R M KK+ K + R+ Sbjct: 117 NQTTIESEDFLSIVMQHEIDHLNGVIFIDYLSPLRRKMALKKVQKYISNRN 167 >gi|171909540|ref|ZP_02925010.1| peptide deformylase [Verrucomicrobium spinosum DSM 4136] Length = 192 Score = 199 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 109/180 (60%), Gaps = 16/180 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+VI+ DP+LR +PI ++ +I L +M+E M++ G+GLAA Q+G+ +L VI Sbjct: 1 MILPIVIYGDPVLRVKCKPITEVTEEIRKLSQDMIETMHNARGVGLAAPQVGIALQLAVI 60 Query: 62 DLQDHAH---------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 ++ P++F+NPK+ + ++ +EGCLSIPD R++V+R Sbjct: 61 EVPPDDESVTYVRLNGEDTPLAEAMPLIFLNPKLD-HGKEKAMGEEGCLSIPDLRSEVRR 119 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 SA + V Y + + + I ADGLLA LQHE+DHLNGILFID LS + + +K+ +L+ Sbjct: 120 SAGVKVEYQTLDGETRTIEADGLLARALQHEIDHLNGILFIDRLSAAAKLGVRRKLKRLM 179 >gi|149278151|ref|ZP_01884289.1| peptide deformylase [Pedobacter sp. BAL39] gi|149230917|gb|EDM36298.1| peptide deformylase [Pedobacter sp. BAL39] Length = 184 Score = 199 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 98/168 (58%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+L++V PIE+ ++ LI NM E MY+ G+GLAA QIG+ RL VI Sbjct: 1 MKLPIVAYGDPVLKKVCAPIEQDYPELKQLISNMFETMYNAHGVGLAAPQIGLPIRLFVI 60 Query: 62 DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D V+IN +I+ + + + EGCLSIPD R DV R I +RY D N + Sbjct: 61 DTGGDEDEDGVKRVYINAEILEENGEPWAFNEGCLSIPDIREDVMRKPNIRIRYYDENWE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 G+LA +QHE DH+ G LF + LS L++ M+ K+ + + Sbjct: 121 LHEKEVTGMLARVIQHEYDHIQGKLFTETLSLLRKRMLQSKLDAISKG 168 >gi|329114447|ref|ZP_08243209.1| Peptide deformylase [Acetobacter pomorum DM001] gi|326696523|gb|EGE48202.1| Peptide deformylase [Acetobacter pomorum DM001] Length = 275 Score = 199 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 113/169 (66%), Gaps = 2/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++ P P+LR+ +R ++ + +DI ++ NM MY GIGLAA Q+G+ R ++ Sbjct: 108 APLQILTPPHPVLRQKARLVKPEDVADIRKILPNMFSAMYQAPGIGLAAPQVGLSQRFLL 167 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R +P+V INP++I ++D +V +EGCLS+P+ A+V R I VR+ + N Sbjct: 168 VDLGEKDAR-DPIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNINGD 226 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K ++ + Sbjct: 227 VVEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAKELKRK 275 >gi|86142250|ref|ZP_01060760.1| peptide deformylase [Leeuwenhoekiella blandensis MED217] gi|85831002|gb|EAQ49459.1| peptide deformylase [Leeuwenhoekiella blandensis MED217] Length = 196 Score = 199 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 97/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+ + I + ++ L+ NM E MY G+GLAA QIG RL V+ Sbjct: 1 MILPIVAYGDPVLRKKAVEIPQDYPELKELVANMFETMYGASGVGLAAPQIGKAIRLFVV 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A ++ FINP+I+ + D + EGCLSIP DV R Sbjct: 61 DATPFADDEDLSDEEQERLRTFKKAFINPQILEETGDEWAFSEGCLSIPGINEDVFRCPI 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ++Y D + + DGLLA +QHE DH+ GILF D LS LK+ +I K++ + + + Sbjct: 121 IKIKYQDEDFNEHVEEFDGLLARVIQHEYDHIEGILFTDKLSSLKKRIIKSKLAGISKGK 180 >gi|227833011|ref|YP_002834718.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] gi|262182501|ref|ZP_06041922.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975] gi|227454027|gb|ACP32780.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] Length = 169 Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 1/167 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + ++ DP+L + I + + L +MLE M G+GLAA QIGV R+ V Sbjct: 1 MTVREVRLYGDPVLTTRAEEITEFGPSLERLAQDMLETMEDAGGVGLAANQIGVTKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H V INP+ ++ + EGCLSIP +R + + +R D + Sbjct: 61 FDCSHFQHGLRGAV-INPEWEAVGEEMQLGTEGCLSIPGISQPTERFSTVRLRGYDPQGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A GL+A C+QHE DHL+G+LF+ LS R K + + Sbjct: 120 PVSMLASGLMARCIQHETDHLDGVLFLQRLSDELRKESMKTIRQAEW 166 >gi|209693699|ref|YP_002261627.1| peptide deformylase [Aliivibrio salmonicida LFI1238] gi|238058218|sp|B6EP21|DEF_ALISL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|208007650|emb|CAQ77760.1| peptide deformylase (polypeptide deformylase) [Aliivibrio salmonicida LFI1238] Length = 169 Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 97/157 (61%), Gaps = 3/157 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++ + +I ID+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MAVLEVLTFPDDRLRTVAKPVKTVTPEIQTFIDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP I S D + +EGCLS+P + V RSA ++V +D + Sbjct: 61 IDVSET--RDEPMVLINPVITQKSGDDGI-EEGCLSVPGAKGMVPRSAEVSVTALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 AD LLA C+QHELDHL G LF+D+LS LKR Sbjct: 118 EFSFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKR 154 >gi|160901540|ref|YP_001567121.1| peptide deformylase [Petrotoga mobilis SJ95] gi|160359184|gb|ABX30798.1| peptide deformylase [Petrotoga mobilis SJ95] Length = 178 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 95/163 (58%), Gaps = 1/163 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + DP+LR+ ++ +E + ++ +++D M MY DG+GLAA Q+G+ R ++D + Sbjct: 2 EIRLIGDPVLRKRAKKVENFDDNLKDVVDEMFSTMYLYDGVGLAAPQVGISLRFFIMDSR 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + +V INP+II F + ++EGCLSIPD DV R + VRY D + Sbjct: 62 EENEKGKKVV-INPEIIEFLGEEVSFEEGCLSIPDIFEDVVRPEGVRVRYQDLSGNVIEE 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G A QHE DHL GILF D L +K+ + K++++L++ Sbjct: 121 ELHGYQARIFQHETDHLEGILFTDKLPIVKKARLKKELNQLIE 163 >gi|304404142|ref|ZP_07385804.1| peptide deformylase [Paenibacillus curdlanolyticus YK9] gi|304347120|gb|EFM12952.1| peptide deformylase [Paenibacillus curdlanolyticus YK9] Length = 165 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 57/148 (38%), Positives = 86/148 (58%), Gaps = 3/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDP+LR V++ + K ++ L+++M + MY +G+GLAA QIG+ R++V Sbjct: 1 MSIRIIVKEPDPVLREVAKEVTKFTPNLHKLLNDMADTMYDAEGVGLAAPQIGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + +NP I+ S+ EGCLSIP+ DV R+ + V D N Sbjct: 61 VDIGE--EESGLIEVVNPVIV-LSEGEQFGPEGCLSIPNLNGDVSRADRVKVAGQDRNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + A G LA QHE+DHLNGILF D Sbjct: 118 PIEVDASGFLARAFQHEIDHLNGILFTD 145 >gi|301064006|ref|ZP_07204471.1| peptide deformylase [delta proteobacterium NaphS2] gi|300441917|gb|EFK06217.1| peptide deformylase [delta proteobacterium NaphS2] Length = 171 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 66/152 (43%), Positives = 98/152 (64%), Gaps = 1/152 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +P+P+L++ + P++ I+ ++ +ID MLE MY+ GIGLAA Q+GVL R++V Sbjct: 1 MSHMKIFTYPEPVLKKNAEPVKNIDEELQEIIDQMLETMYAAPGIGLAANQVGVLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D NP + INP+I+ + E CLS+PD+ A+V R+A I V+ +D N + Sbjct: 61 FDGSPREEGANPQILINPEIVAAEGSI-KWDEACLSVPDFTAEVNRNANIQVKGLDRNGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A LLA CLQHE+DHL+GILFID +SR Sbjct: 120 PLELEAKDLLAVCLQHEIDHLDGILFIDRISR 151 >gi|116621863|ref|YP_824019.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076] gi|116225025|gb|ABJ83734.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076] Length = 171 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + P+V F DP+L R + + + + ++ +D+M E MY+ G+GLAA QIGV ++ V Sbjct: 1 MVYPIVKFGDPVLEREADTVTEFDTPELHKFLDDMFESMYAAKGVGLAAPQIGVSKKIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + +V INPKI+ D +EGCLSIP +R V+R+ +T+R + + Sbjct: 61 IDVSNGENADDKLVIINPKILKI-DGKQEGEEGCLSIPGFREQVRRARCVTIRAQNAKGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LLA HE DHL G L+I H+S LKRD++ +K+ KL + D Sbjct: 120 EFEKTGEDLLARAFLHETDHLYGRLYITHISALKRDLMKRKIKKLQRAGD 169 >gi|124007536|ref|ZP_01692241.1| peptide deformylase [Microscilla marina ATCC 23134] gi|123987019|gb|EAY26775.1| peptide deformylase [Microscilla marina ATCC 23134] Length = 183 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L++ + I +D+ L++NM E MY G+GLAA QIG RL VI Sbjct: 1 MIYPIVAYGDPVLKKKAEEIAP-GTDVSELVENMFETMYEAHGVGLAAPQIGKSLRLFVI 59 Query: 62 DLQDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + + M FINP I+ V++EGCLSIPD R +V R I ++Y D N Sbjct: 60 DPEPMDEALQNMKMTFINPVILEEEGTEWVFEEGCLSIPDIRENVSRQPKIRIKYFDLNW 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + DG+ A +QHE DH+ G+LF D+LS K+ ++ +++K+ + Sbjct: 120 KEHEAEYDGMAARVIQHEYDHIEGVLFTDYLSGFKKRLLKSRLTKISKG 168 >gi|322384330|ref|ZP_08058028.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150832|gb|EFX44269.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 160 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 100/160 (62%), Gaps = 4/160 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ PDP+LR ++P+ K NS + L+D+M + MY +G+GLAA Q+G+L R +V Sbjct: 1 MAIRIIVMDPDPVLREKAKPVTKFNSSLHKLLDDMADTMYENEGVGLAAPQVGILKRAIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + +NP+I+ S + + EGCLSIPD + DV+R +TV+ D N Sbjct: 61 MDVGD---EHGLIELVNPEIVATSGE-QIGPEGCLSIPDLQGDVRRPMNVTVKGQDRNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I+ LLA C+ HE+DHLNGILF D +L R+ + + Sbjct: 117 EVIVEGTELLARCIMHEVDHLNGILFTDLALKLYRNELEE 156 >gi|99082419|ref|YP_614573.1| peptide deformylase [Ruegeria sp. TM1040] gi|99038699|gb|ABF65311.1| Peptide deformylase [Ruegeria sp. TM1040] Length = 169 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 1/162 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +PDP L P+ D+ LID++LE MY+ G GLAA Q+GVL R+ V Sbjct: 1 MSLLPIVQWPDPRLSTACAPVGAA-EDLGTLIDDVLETMYAAPGRGLAAPQVGVLKRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +NP+V I P+++ SDD ++ +E CLSIP + R I +R+ D + Sbjct: 60 MDVDWKEGPRNPVVMIYPEVLWRSDDTTLAKEACLSIPGLSTRITRPTKIRIRWQDADRA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 Q DG A C+QHE DHL+G + DH S +R ++ + Sbjct: 120 AQEQTFDGFAARCIQHEYDHLDGRVTFDHFSSEERRLLEAQY 161 >gi|329849466|ref|ZP_08264312.1| peptide deformylase [Asticcacaulis biprosthecum C19] gi|328841377|gb|EGF90947.1| peptide deformylase [Asticcacaulis biprosthecum C19] Length = 177 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 114/175 (65%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ P P+L++VS+P++K++ D+ L+D+MLE MY GIGLAAVQIG R++V Sbjct: 1 MAIREILTVPHPVLKQVSKPVDKVDDDLRRLMDDMLETMYDAPGIGLAAVQIGEPIRVIV 60 Query: 61 IDL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +DL D K P F+NP+II S++ + Y+EGCLS+P+ +V R + + + Sbjct: 61 MDLQEKPEGAEPDAEGVKKPRYFVNPEIIWRSEEVAPYEEGCLSVPEIYDEVLRPSKVKL 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +Y+D N ADGL A C+QHE+DHL G LFIDHLS+LKRD K+ KL + Sbjct: 121 KYLDYNGNAVEEDADGLFAVCIQHEMDHLEGTLFIDHLSKLKRDRAITKVKKLTR 175 >gi|30249917|ref|NP_841987.1| formylmethionine deformylase [Nitrosomonas europaea ATCC 19718] gi|39931083|sp|Q82TC8|DEF2_NITEU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|30180954|emb|CAD85881.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718] Length = 185 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +++ + I +I L+ NM E MY+ GIGLAA Q+ V R++V Sbjct: 18 MAILNILRYPDERLHKIATEVPSITREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIV 77 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R +V INP+II S + QEGCLS+P V R+ +TVR + + Sbjct: 78 IDVSET--RDELLVLINPEIIASSGNAET-QEGCLSVPGIFDKVTRAEEVTVRATGIDGK 134 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A GLLA C+QHE+DHL G +F+++LS K+ I K+ K + + Sbjct: 135 SFEMDASGLLAVCIQHEMDHLMGKVFVEYLSPFKQSRILSKLKKQARRQ 183 >gi|325298805|ref|YP_004258722.1| Peptide deformylase [Bacteroides salanitronis DSM 18170] gi|324318358|gb|ADY36249.1| Peptide deformylase [Bacteroides salanitronis DSM 18170] Length = 184 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA Q+G+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVV 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +L ++ +INP I+ + EGCLS+P VKR I V Y+D Sbjct: 61 NLDVLAEDFPEYKDFRRAYINPHILETGGELVSMDEGCLSLPGIHESVKRPDKIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ + Sbjct: 121 EDMNPHDEWVEGYLARVMQHEFDHLEGTMFIDHLSALRKQMIKGKLNAMLKGK 173 >gi|288918232|ref|ZP_06412587.1| peptide deformylase [Frankia sp. EUN1f] gi|288350402|gb|EFC84624.1| peptide deformylase [Frankia sp. EUN1f] Length = 183 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+LR V+ P+ + ++ L+D++ E M G+GLAA Q+GV R+ Sbjct: 1 MSVRDIRLLGDPVLRTVADPVATFDRELRRLVDDLAETMNEAGGVGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 L D + +NP + FS++ +EGCLS+P D++R + + + Sbjct: 61 Y-LDDSDEVGH---LVNPVLGPFSEEMMDGEEGCLSLPGLSFDLRRPERVLAVGQNVHGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I G+L+ CLQHE DHL+GILFID L + + K + + + Sbjct: 117 PVTIEGSGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIREAEWANE 166 >gi|213965139|ref|ZP_03393337.1| peptide deformylase [Corynebacterium amycolatum SK46] gi|213952253|gb|EEB63637.1| peptide deformylase [Corynebacterium amycolatum SK46] Length = 193 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++P+ + S++ LI++M E M G+GLAA Q+GV RL V Sbjct: 1 MTIRPIVIAGDPVLHTPTQPVTEDVSELRELIEDMYETMDRAHGVGLAANQVGVGKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + D + INP + T +D EGCLS+P R+ V Sbjct: 61 YNCPDDDDVWHRGCVINPVLTTSEIPKTMPNDDGSDDEGCLSVPGLSFPTNRAEKAVVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D N + I A G A C+QHE+ HL+G L+ D L+ + M K++ + Sbjct: 121 LDENGEEVRIEATGFFARCMQHEVGHLDGFLYTDCLTGRWKRMAKKEIKR 170 >gi|225181326|ref|ZP_03734770.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1] gi|225167907|gb|EEG76714.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1] Length = 154 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR ++ + +I + L+++M+E MY +GIGLAA Q+G+ R++V Sbjct: 1 MAIRIIRTTGDPVLREKAKEVPEITPQVKKLLEDMVETMYDAEGIGLAAPQVGISKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD + INP+II+ + EGCLS P +V+R +TVR D + Sbjct: 61 IDVQDETGV---LKLINPEIIS-GEGKETSVEGCLSFPGVAGEVERDESVTVRAQDPDGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 I A GLLA QHE+DHL+GILF+D ++RL Sbjct: 117 TVEICASGLLARAFQHEIDHLDGILFVDKVTRLLEQK 153 >gi|34558486|ref|NP_908301.1| peptide deformylase [Wolinella succinogenes DSM 1740] gi|39930815|sp|Q7M7M2|DEF_WOLSU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|34481780|emb|CAE11201.1| POLYPEPTIDE DEFORMYLASE PDF FORMYLMETHIONINEDEFORMYLASE [Wolinella succinogenes] Length = 170 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 99/166 (59%), Gaps = 4/166 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P++ +P P+L++ S P+ + ++ +D M M + +G+GLAAVQ+G R +++++ Sbjct: 3 PIITYPHPLLKKRSEPVTLFDEELRQFLDEMYITMLAKNGVGLAAVQVGNPIRALIVNIP 62 Query: 65 DHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D R+N + INP+ ++ + + EGCLS+P++ DV R + + Y D + Sbjct: 63 DEEGNQERENLLEIINPEFLSKEGEIQ-FNEGCLSVPEFYEDVTRFDRVRLTYQDRYGER 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A+G LA LQHE+DHLNGILFID LS +KR K++ K + Sbjct: 122 HEIEAEGYLAVALQHEIDHLNGILFIDKLSLIKRKKFEKELKKRQR 167 >gi|163782173|ref|ZP_02177172.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1] gi|159882705|gb|EDP76210.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1] Length = 171 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 97/170 (57%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +V +P +L++ + + I+ ++ +LI +M + MY+ +G+GLAA QIGV ++VI Sbjct: 1 MVREIVTYPAEVLKKPTLEVSDIDREVKSLIKDMFDTMYNAEGVGLAANQIGVPLSVMVI 60 Query: 62 DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + +V INP++I S+ Y+EGCLS P +V+R+ + VR ++ + + Sbjct: 61 DTTPKEDVPDLKLVLINPEVI-ASEGKQKYKEGCLSFPGLSVEVERAKRVKVRALNEHGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + A QHELDHL GI FID L +R + +K KL + + Sbjct: 120 PVEVVLEDFPAIVFQHELDHLKGITFIDRLKGWRRRLALEKYRKLQKEAE 169 >gi|29833668|ref|NP_828302.1| polypeptide deformylase [Streptomyces avermitilis MA-4680] gi|39931074|sp|Q826Q0|DEF2_STRAW RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|29610792|dbj|BAC74837.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680] Length = 186 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 82/167 (49%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + ++ L+++M MY+ +G+GLAA QIGV R+ V D Sbjct: 13 VRPLALLGDPVLHAPCEEVTDHGPELARLVEDMFATMYAANGVGLAANQIGVPLRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP++I EGCLS+P A +R V + + Sbjct: 73 CPDDEDVRHVGHVVNPRLIEADGVVLRGPEGCLSLPGLEAGTERYDRAVVEGFTTDGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G A CLQHE DHL+G +++D +S + + ++ ++ R Sbjct: 133 RVLGTGWFARCLQHECDHLDGGVYVDRVSGWRHRRVMRQAARAPWNR 179 >gi|225021362|ref|ZP_03710554.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii ATCC 33806] gi|224945744|gb|EEG26953.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii ATCC 33806] Length = 169 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + IF DP+L + I + + +L+++M + M + G+GLAA QIGVL R+ V Sbjct: 1 MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMFDTMDAAGGVGLAANQIGVLRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP+ ++ + EGCLSIP+ AD +R + V D + Sbjct: 61 FDCT-TEEDGMRGHIINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A GL+A C+QHE DHL+G+LF+ L+ +R + + Sbjct: 120 PLTITASGLMARCIQHETDHLDGVLFLRRLTPERRKEAMAYIRQ 163 >gi|19552813|ref|NP_600815.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|62390483|ref|YP_225885.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|145295722|ref|YP_001138543.1| peptide deformylase [Corynebacterium glutamicum R] gi|25452910|sp|Q8NQ46|DEF1_CORGL RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|21324370|dbj|BAB98994.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC 13032] gi|41325820|emb|CAF21609.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032] gi|140845642|dbj|BAF54641.1| hypothetical protein [Corynebacterium glutamicum R] Length = 169 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 1/167 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+L + + + + LID+M + M G+GLAA Q+GVL R+ V Sbjct: 1 MAVREVRLFGDPVLVSRADEVVDFDESLSTLIDDMFDTMEDAGGVGLAANQVGVLRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP ++D +EGCLSIPD A+ R + + D + Sbjct: 61 FDTSHQEGGLR-GHVINPVWEPLTEDTQTGKEGCLSIPDVSAETTRYETVRLSGQDRDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+GLLA C+QHE DHL+G+LF+ L +R + Sbjct: 120 PVGFVANGLLARCIQHETDHLDGVLFLKRLDPAERKAAMGVIRASAW 166 >gi|289548788|ref|YP_003473776.1| peptide deformylase [Thermocrinis albus DSM 14484] gi|289182405|gb|ADC89649.1| peptide deformylase [Thermocrinis albus DSM 14484] Length = 174 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 99/168 (58%), Gaps = 2/168 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P P+L++ + ++ I+S+I+ L+ +M + MY+ +G+GLAA QIG R++VI Sbjct: 1 MVRSVLKYPHPLLKQPTLKVDVIDSEILKLVQDMWDTMYAEEGVGLAANQIGEPLRIMVI 60 Query: 62 DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +V INP++I + Y+EGCLS P +V R + + R +D + + Sbjct: 61 DTTPKRESPPVKLVLINPQLIEA-EGHITYREGCLSFPGLSVEVTRYSKVRFRALDLSGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +G A QHELDHLNGI FID LS L+R + +K KL + Sbjct: 120 EKEYQLEGFPAIVFQHELDHLNGITFIDRLSGLRRRLALEKYGKLQRQ 167 >gi|255037799|ref|YP_003088420.1| peptide deformylase [Dyadobacter fermentans DSM 18053] gi|254950555|gb|ACT95255.1| peptide deformylase [Dyadobacter fermentans DSM 18053] Length = 194 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 13/180 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DPILR+ +R IEK D+ L ++M E M+ +G+GLAA QIG+ R+ V+ Sbjct: 1 MIYPIVAYGDPILRKPTRFIEKDEVDLKKLSEDMFETMHGANGVGLAAPQIGLNIRIFVV 60 Query: 62 DLQDHAHRKN-------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 D A R FINP+I+ + + ++EGCLSIP R DV R Sbjct: 61 DGTPFAERDEDDDDEPDLSLVDFKKTFINPEILEETGEEWGFEEGCLSIPGIRGDVYRPE 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +RY D + G+ A +QHE DHL G LF+D+L LK+ I KK++ + + Sbjct: 121 TLRIRYRDLDWNEHEETYSGMAARIIQHEYDHLLGKLFVDYLPTLKKQFIKKKLTDISKG 180 >gi|160883802|ref|ZP_02064805.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483] gi|260170792|ref|ZP_05757204.1| peptide deformylase [Bacteroides sp. D2] gi|293372830|ref|ZP_06619208.1| peptide deformylase [Bacteroides ovatus SD CMC 3f] gi|299149164|ref|ZP_07042225.1| peptide deformylase [Bacteroides sp. 3_1_23] gi|315919126|ref|ZP_07915366.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156110887|gb|EDO12632.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483] gi|292632205|gb|EFF50805.1| peptide deformylase [Bacteroides ovatus SD CMC 3f] gi|298512831|gb|EFI36719.1| peptide deformylase [Bacteroides sp. 3_1_23] gi|313693001|gb|EFS29836.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 184 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L + +INP I+ + +EGCLS+P VKR I V+YMD Sbjct: 61 TLDPLSEEYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 ENFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173 >gi|296115067|ref|ZP_06833709.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] gi|295978404|gb|EFG85140.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] Length = 180 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+++ P ILR+ +R + ++ + I M MY GIGLAA Q+G+ R ++D+ Sbjct: 14 PILVAPQAILRQKTRLVRPEDTAQLREAIPRMFAAMYKAPGIGLAAPQVGLGLRFALVDV 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D +NPMV INP II ++ SV +EGCLS+P+ A+V R + VRY D + Sbjct: 74 ADKDEARNPMVLINPDIIAETETMSVREEGCLSLPNQYAEVARPESVRVRYQDLEGKRHE 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I DGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K +LR Sbjct: 134 IEVDGLLATCIQHEIDHLEGILFVDHLSALKRNMIMRRLAKEQRLR 179 >gi|331697237|ref|YP_004333476.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190] gi|326951926|gb|AEA25623.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190] Length = 182 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + ++++ L+ ++ + M+ G GLAA QIGV R+ Sbjct: 1 MSVQPVRLFGDPVLRTPAVEVTTFDAELRKLVADLTDTMHDEGGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ A +NP D+ EGCLSIP R D R + R + + + Sbjct: 61 YDVDGFAG-----HLVNPTFDVVGDEEQTGPEGCLSIPGLRWDCTRHLHVVARGWNVHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + LLA C+QHE DHL+G+LF+D L R + ++ Sbjct: 116 PVTVEGSELLARCIQHETDHLDGVLFVDRLDAETRKLAMAEIRAAEW 162 >gi|189461816|ref|ZP_03010601.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136] gi|189431410|gb|EDV00395.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136] Length = 184 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA Q+G+ R+VVI Sbjct: 1 MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVI 60 Query: 62 DL----QDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +L +D + +INP I+ ++ +EGCLS+P VKR I V Y+D Sbjct: 61 NLDVLSEDMPEFKDFRRAYINPHILETGEELVSMEEGCLSLPGIHEAVKRPDKIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + +G LA +QHE DHL+G +FIDHLS L++ MI K++ +++ + Sbjct: 121 EDMNPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIKGKLNNMLKGK 173 >gi|54025579|ref|YP_119821.1| peptide deformylase [Nocardia farcinica IFM 10152] gi|54017087|dbj|BAD58457.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152] Length = 185 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DPILR + + + + ++ L+ ++ + M+ G+G+AA QIGV R+ V Sbjct: 1 MTIQPVRLFGDPILRARASEVTEFDRELRQLVTDLTDTMHDDGGVGMAAPQIGVGLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D A +NP D+ V EGCLSIP R D +R+ + VR +D + Sbjct: 61 YDTGDAAG-----HLVNPTYTVVGDEEQVGPEGCLSIPGLRYDTRRALRVHVRGVDMHGA 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LLA C+QHE DHL+G+LFID L R + + + Sbjct: 116 PVEFDADELLARCVQHETDHLDGVLFIDRLDPAARKEAMRAIRE 159 >gi|288550484|ref|ZP_05970614.2| peptide deformylase [Enterobacter cancerogenus ATCC 35316] gi|288314935|gb|EFC53873.1| peptide deformylase [Enterobacter cancerogenus ATCC 35316] Length = 164 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 68/160 (42%), Positives = 110/160 (68%), Gaps = 3/160 (1%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++VID+ + +R Sbjct: 5 PDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSE--NR 62 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + AD L Sbjct: 63 DGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKPFELEADDL 121 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA C+QHE+DHL G LFID+LS LK+ I +K+ KL ++R Sbjct: 122 LAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 161 >gi|189485012|ref|YP_001955953.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|238058216|sp|B1GZ10|DEF_UNCTG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|170286971|dbj|BAG13492.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 168 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 94/159 (59%), Gaps = 3/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + + DP LR+ + + +IN I L +MLE MYS G+GLAA Q+G+L R V Sbjct: 1 MAKLKIKKYGDPALRKRAEAVSEINEIIKELASDMLETMYSASGVGLAAPQVGILLRFCV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++K+P+V INP+II+ ++ +EGCLS P + +V R I Y D N Sbjct: 61 IDVDP--NKKSPIVMINPEIIS-GENKITAEEGCLSFPGFYGNVNRFENIIAGYTDLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 Q I A LA LQHE+DHL+ LFID+L KR+ I Sbjct: 118 RQEIKAQNFLAKALQHEIDHLDAKLFIDYLPDWKRESIE 156 >gi|298372481|ref|ZP_06982471.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058] gi|298275385|gb|EFI16936.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058] Length = 185 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 100/177 (56%), Gaps = 9/177 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ +LR V++PI + +I LIDNM E M + DGIGLAA QIG+ RL VI Sbjct: 1 MILPVYLYGSGVLREVAKPITEDYPNIRELIDNMFETMRNADGIGLAAPQIGLSIRLFVI 60 Query: 62 DLQDHAHRKN---------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 D+ ++ +FIN +I D +Y+EGCLSIP V R I + Sbjct: 61 DISPLDTERDFPQLRDCPKQKIFINAEITERYGDTVIYEEGCLSIPKINEKVPRPDKIKI 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +Y+D + +G A +QHE DH++G +F+DH+S L++ +I K++ +V+ + Sbjct: 121 KYLDETFREHEDEFEGYFARVIQHECDHIDGKMFVDHISPLRKQLIKSKLADIVKRK 177 >gi|307565540|ref|ZP_07628020.1| peptide deformylase [Prevotella amnii CRIS 21A-A] gi|307345699|gb|EFN91056.1| peptide deformylase [Prevotella amnii CRIS 21A-A] Length = 186 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR++++ I + ++ LI +M E ++DG+GLAA Q+G R+VVI Sbjct: 1 MILPIYTYGQPVLRKIAQDIPESYPELQELIADMFETCSASDGVGLAAPQVGKPIRVVVI 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL ++ FIN I D + V +EGCLS+P V+R + V+++ Sbjct: 61 DLDVVSDNFPEYKGFRHAFINGHITEVDDTETEVMEEGCLSLPGLHEKVERPKRVRVKWI 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + + G LA +QHE DHL G +F D +S ++ MI KKM L+Q + Sbjct: 121 DENMEEHHEWLSGFLARVVQHEFDHLEGKVFTDRVSPFRKQMIKKKMKALLQGK 174 >gi|52080175|ref|YP_078966.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|52785552|ref|YP_091381.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|319646045|ref|ZP_08000275.1| def protein [Bacillus sp. BT1B_CT2] gi|52003386|gb|AAU23328.1| polypeptide deformylase [Bacillus licheniformis ATCC 14580] gi|52348054|gb|AAU40688.1| Def [Bacillus licheniformis ATCC 14580] gi|317391795|gb|EFV72592.1| def protein [Bacillus sp. BT1B_CT2] Length = 160 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+V +P +L + P+ + + L+DNM + M DG+GLAA QIGV R V Sbjct: 1 MAVKPIVTYPAEVLETPAEPVASFDKSLKKLLDNMYDTMLELDGVGLAAPQIGVSKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R +NP++I S + EGCLS PD +VKRS ++ V+ D + Sbjct: 61 VDIGDDTGRIE---LVNPEVIEESGE-QTGPEGCLSFPDLYGEVKRSDYVKVKAFDRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I A+G LA L HE+DHL+GILF ++R ++M Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFTSKVTRYYDAEELEEME 159 >gi|239904668|ref|YP_002951406.1| peptide deformylase [Desulfovibrio magneticus RS-1] gi|239794531|dbj|BAH73520.1| peptide deformylase [Desulfovibrio magneticus RS-1] Length = 174 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 72/163 (44%), Positives = 99/163 (60%), Gaps = 1/163 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ +P P+L + + P+ +I I L M E MY+ GIGLAA Q+G RL+VIDL Sbjct: 4 EILKYPHPVLAKKAEPVAEITDAIRELAAGMAEAMYANQGIGLAAPQVGASIRLIVIDLS 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 R+ M +NP I S + +EGCLS+ YR V+R+A +TV +D Q I Sbjct: 64 GPDKREALMTLVNPVITAASGE-QEDEEGCLSVRSYRTKVRRAANVTVTALDLAGQPLTI 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 AD LLA CLQHE+DHL+G+LFID +SRLKR M K++ + Q Sbjct: 123 EADELLAVCLQHEVDHLDGVLFIDRISRLKRAMYDKRVKRWAQ 165 >gi|291333895|gb|ADD93575.1| peptide deformylase [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 171 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 107/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR ++P++++ + LIDNM+ MY + GIGLAA Q+ R++V Sbjct: 1 MKLLKILEFPDPRLRTKAKPVQEVTNVHKELIDNMIHTMYESKGIGLAATQVDFHERILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITF-SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ID+ + R +P VFINP++ + S Y+EGCLS+P + ++ R I V Y+D + Sbjct: 61 IDISE--ERDDPQVFINPEVEILNKKEKSGYEEGCLSVPGFYEEIIRPEKIKVTYLDRDG 118 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q + +GLLA +QHE+DHL GIL +D++S +KR I +K+ K + + Sbjct: 119 KKQTLMPEGLLAVVIQHEIDHLEGILMVDYISSIKRQRIKQKLQKSAKEK 168 >gi|302341791|ref|YP_003806320.1| peptide deformylase [Desulfarculus baarsii DSM 2075] gi|301638404|gb|ADK83726.1| peptide deformylase [Desulfarculus baarsii DSM 2075] Length = 170 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +PDP+L I++++ ++ L +M++ MY G+GLAA Q+G R+VV Sbjct: 1 MAILPICKYPDPVLAEKCAEIDRVDDELRRLAQDMIDTMYDAPGVGLAAPQVGRAIRMVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R PMV INP+++ V+ E CLS+PDYRADV R++ + V D Sbjct: 61 VDTAEDDKRGTPMVLINPRVVAKRGQL-VWDEACLSVPDYRADVVRASEVVVEAGDLEGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 I A+GL A CLQHE+DHL+G+LF+DH+S LKR M Sbjct: 120 DLRIEAEGLTAVCLQHEIDHLDGVLFLDHISSLKRAM 156 >gi|296140267|ref|YP_003647510.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] gi|296028401|gb|ADG79171.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] Length = 180 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+PDP+LR + + ++D+ L+D+M++ M+ +G GLAA Q+GV R+ V Sbjct: 1 MSVLPIRIYPDPVLRTRADEVTVFDADLARLVDDMIDTMHHHNGAGLAAPQVGVSKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 INP D+ EGCLSIP+ R + +D + + Sbjct: 61 FGCGGREG-----HIINPVWRAVGDETQTGPEGCLSIPEILEPCTRHLNVVAEGVDVHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I +LA C+QHE DHL+G+LF+ L R K + Sbjct: 116 SLAIEGTEILARCIQHETDHLDGVLFLSRLEPEDRKRAMKAIR 158 >gi|86133858|ref|ZP_01052440.1| polypeptide deformylase [Polaribacter sp. MED152] gi|85820721|gb|EAQ41868.1| polypeptide deformylase [Polaribacter sp. MED152] Length = 196 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 98/180 (54%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR++ I+K ++ LI NM E MY+ G+GLAA QIG RL VI Sbjct: 1 MILPIVAYGDPVLRKMGVEIDKDYPNLKELIANMKETMYNASGVGLAAPQIGKAIRLFVI 60 Query: 62 DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + V+INPKII + + EGCLSIPD R DV R + Sbjct: 61 DASPFAEDDDLDDEERATLKDFNRVYINPKIIDEEGEEWTFNEGCLSIPDVREDVTRKSK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +T+ Y D + DGL A QHE DH+ G+LF D +S LK+ +I +K+ + + + Sbjct: 121 VTLEYQDEDFNTHTEVLDGLAARVFQHEYDHIEGVLFTDKVSSLKKRLIKRKLENISKGK 180 >gi|225698067|pdb|3FWX|A Chain A, The Crystal Structure Of The Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961 gi|225698068|pdb|3FWX|B Chain B, The Crystal Structure Of The Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961 Length = 169 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 110/168 (65%), Gaps = 3/168 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ FPD LR V++P+E++ +I ++D+ LE Y+ +GIGLAA Q+ + R+VVID Sbjct: 3 VLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDXLETXYAEEGIGLAATQVDIHQRIVVID 62 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + + R P V INP+II + + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 63 ISET--RDQPXVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 119 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 120 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167 >gi|25028276|ref|NP_738330.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|259507334|ref|ZP_05750234.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|39931152|sp|Q8FT51|DEF1_COREF RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|23493560|dbj|BAC18530.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314] gi|259165045|gb|EEW49599.1| peptide deformylase [Corynebacterium efficiens YS-314] Length = 169 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 1/159 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + IF DP+L + + + + LID+M + M G+GLAA Q+GVL R+ V Sbjct: 1 MTVRDVRIFGDPVLTSRADEVVDFDESLATLIDDMFDTMEDAGGVGLAANQVGVLRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +NP ++ +EGCLSIPD A+ R + + D + Sbjct: 61 FDCSHVDGGLR-GHVVNPVWEPIGEETQTGKEGCLSIPDVSAETTRYETVKLSGQDRDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A GLL+ C+QHE DHL+G+LF+ L +R Sbjct: 120 PIGLVASGLLSRCIQHETDHLDGVLFLKRLDPAERKAAM 158 >gi|255325044|ref|ZP_05366150.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] gi|255297609|gb|EET76920.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] Length = 170 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L I+ DP+L + I K ++ + L +MLE M + G+GLAA Q+G+L R+ V Sbjct: 1 MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDNAGGVGLAANQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H +NP + EGCLSIP A+ R + V D + Sbjct: 61 YDCS-HTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GL+A C+QHE DHL+G+LF+ L R + + + Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRLEAPVRKEAMRAIRE 163 >gi|256379232|ref|YP_003102892.1| peptide deformylase [Actinosynnema mirum DSM 43827] gi|255923535|gb|ACU39046.1| peptide deformylase [Actinosynnema mirum DSM 43827] Length = 181 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + + + ++ L+ ++ + M G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPAVEVTEFDVELRKLVKDLWDTMSDAGGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 A +NP D+ EGCLSIP D R + R + + + Sbjct: 61 YHCDGFAG-----HMVNPTFDVVGDETQDGPEGCLSIPGMSWDCVRHRQVVARGWNMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + LLA C+QHE DHL+G++F+D L R +++ + Sbjct: 116 PVEVEGTDLLARCIQHETDHLDGVVFVDRLDEETRKRAMREIRQ 159 >gi|83594679|ref|YP_428431.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170] gi|83577593|gb|ABC24144.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170] Length = 172 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 77/167 (46%), Positives = 110/167 (65%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP L + + P+E ++ I L+D+MLE MY GIGLAA Q+GVL R++V Sbjct: 1 MALLPILTAPDPRLTKKALPVETVDVSIRKLMDDMLETMYLAPGIGLAAPQVGVLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D PM NP+II S+D Y+EGCLS+P+ V R + VRY+D + + Sbjct: 61 LDPAREDEAPRPMRLANPEIIWSSEDTKPYEEGCLSVPEQYDTVVRPDRVRVRYLDPDNE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I ADGLLA LQHE+DHL+GILF+D+LS LKR+M+ +K+ K+ + Sbjct: 121 IREIDADGLLAVILQHEIDHLDGILFVDYLSSLKRNMMLRKLRKMKR 167 >gi|331699449|ref|YP_004335688.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190] gi|326954138|gb|AEA27835.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190] Length = 190 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 7/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+L +RP+ + + + L+D+M E M + G+GLAA QIGV R+ V Sbjct: 1 MTVRPIRIIGDPVLHAPTRPVVEFDDALRELVDDMFETMAAAHGVGLAANQIGVDLRVFV 60 Query: 61 IDLQDHAHR-KNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D + V +NP +I D +EGCLS+P + R+ + V Sbjct: 61 YDCPDEVTKTMARGVVVNPVLETSEIPETMPDPEEDEEGCLSVPGEQFPTGRADWARVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +D + Q G LA C QHE+DHL+G L+++ L+ + +KKM K Sbjct: 121 VDVDGQPVEAEGRGFLARCFQHEVDHLDGHLYVERLTG-RHLRASKKMLKAA 171 >gi|298504245|gb|ADI82968.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens KN400] Length = 167 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP+L++ + P+ IN L+ +M E MY G+GLAA QIGV R++VI Sbjct: 1 MVRTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ R +V INP II + S +EGCLS+P Y A+V R + V+ ++ + Sbjct: 61 DVSQRDERPELIVCINPVII-HGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA QHE+DHL+G+LF+DHLS LK++M KK ++ + Sbjct: 120 VVHRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTEEE 167 >gi|306440704|pdb|3OCA|A Chain A, Crystal Structure Of Peptide Deformylase From Ehrlichia Chaffeensis gi|306440705|pdb|3OCA|B Chain B, Crystal Structure Of Peptide Deformylase From Ehrlichia Chaffeensis Length = 209 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 99/181 (54%), Gaps = 17/181 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PD L S +EK++ I L+D+M E M++ G+GLAAVQ+GV R++V Sbjct: 22 MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILV 81 Query: 61 IDLQDHAH-----------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 +++ + P INPKI+ S + +EGCLS+P Y Sbjct: 82 MNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDY 141 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + R I V+Y+D N II A G LA CLQHE+DHLNG +F+ +LS+ KRD +K+ Sbjct: 142 IVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVK 201 Query: 164 K 164 K Sbjct: 202 K 202 >gi|255560876|ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis] gi|223539350|gb|EEF40941.1| polypeptide deformylase, putative [Ricinus communis] Length = 282 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 89/162 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILRR ++ I+ + ++ L+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 92 IVEYPDPILRRKNKRIDTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVG 151 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V INP++ +S + EGCLS P ADV R + + D N + Sbjct: 152 ERGEGEEIVLINPRLNKYSKKIVPFNEGCLSFPGIYADVLRPESVKIDARDINGARFTVN 211 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 GL A QHE DHL GILF D ++ D I ++ L + Sbjct: 212 LSGLPARVFQHEYDHLEGILFFDRMTDEVLDSIRAQLQALEK 253 >gi|305680739|ref|ZP_07403546.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] gi|305658944|gb|EFM48444.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] Length = 169 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + IF DP+L + I + + +L+++ML+ M + G+GLAA QIGVL R+ V Sbjct: 1 MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMLDTMDAAGGVGLAANQIGVLRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP+ ++ + EGCLSIP+ AD +R + V D + Sbjct: 61 FDCT-TEEDGMRGHIINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A GL+A C+QHE DHL+G+LF+ L+ +R + + Sbjct: 120 PLTITASGLMARCIQHETDHLDGVLFLRRLTPERRKEAMAYIRQ 163 >gi|259417997|ref|ZP_05741916.1| peptide deformylase [Silicibacter sp. TrichCH4B] gi|259346903|gb|EEW58717.1| peptide deformylase [Silicibacter sp. TrichCH4B] Length = 169 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 88/160 (55%), Gaps = 1/160 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +PDP L + P+ + D+ LI NMLE MY G GLAA Q+GVL RL V Sbjct: 1 MSLLPIVKWPDPRLTAICAPVAE-GEDLSGLIANMLETMYDAPGRGLAAPQVGVLKRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +NP+V +NP I+ + + + +EGCLSIPD V R I VR+ D Sbjct: 60 MDVDWKDGARNPVVMVNPDILWRATEIAEGEEGCLSIPDVTTPVTRPTEIRVRWYDAKNT 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 DG A C+QHE DHL+G + DHLS R + Sbjct: 120 VNEQCFDGFAARCIQHEYDHLDGRVTFDHLSPEMRRTAQQ 159 >gi|282881719|ref|ZP_06290382.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1] gi|281304478|gb|EFA96575.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1] Length = 187 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 99/175 (56%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V++ I ++ LI +M E M ++DG+GLAA QIG R+VVI Sbjct: 1 MILPIYIYGQPVLRKVAQDITPAYENLQQLIADMFETMDASDGVGLAAPQIGKSIRVVVI 60 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL + ++ +INP II +D S +EGCLSIP V R I V+Y Sbjct: 61 DLNVLSDELPEYKDFRRAYINPHIIEIDEDSPVSTMEEGCLSIPGIHESVTRHTRIRVQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 MD + Q + +G LA +QHE DHL G +F+D +S ++ +I K+ + Q + Sbjct: 121 MDSDFQPHDEWVEGYLARVMQHEFDHLEGKMFVDRVSPFRKQLIKNKLKAMTQGK 175 >gi|298207815|ref|YP_003715994.1| peptide deformylase [Croceibacter atlanticus HTCC2559] gi|83850453|gb|EAP88321.1| peptide deformylase [Croceibacter atlanticus HTCC2559] Length = 196 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + +P+L++ ++ I K + LI+NM E MY G+GLAA Q+G+ RL VI Sbjct: 1 MILPIVAYGNPVLKKKAKDITKDYPKLDELIENMWETMYGAHGVGLAAPQVGLPIRLFVI 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + +FINP I + D + EGCLSIPD R DV R Sbjct: 61 DPSPFADDEELTEEERKQLTGLKKLFINPVITEETGDEWAFSEGCLSIPDVREDVFRQPD 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y+D N + G+ A +QHE DH+ GILF D LS LK+ +I K++ + + + Sbjct: 121 ITIEYVDENFKAHTETYTGIAARVIQHEYDHIEGILFTDKLSSLKKRLIKGKLNNISKGK 180 >gi|15604081|ref|NP_220596.1| peptide deformylase [Rickettsia prowazekii str. Madrid E] gi|6225256|sp|Q9ZDV8|DEF_RICPR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|3860772|emb|CAA14673.1| METHIONYL-TRNA DEFORMYLASE (def) [Rickettsia prowazekii] gi|292571805|gb|ADE29720.1| Polypeptide deformylase [Rickettsia prowazekii Rp22] Length = 175 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PD L++ S+P+ + + +MLE MY+ DG GLAAVQ+G+L R++V Sbjct: 1 MSIFSIVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNADGAGLAAVQVGILLRILV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++++ + P + +NP+II S + EGC+S+P R +V R + +RY+ Sbjct: 61 IDIKEYDPVERPKDFYPLFIVNPEIIEKSTELVTANEGCISLPKQRIEVTRPESVKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + Q + A+ LA +QHE DHL G L +D+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKL 170 >gi|153808041|ref|ZP_01960709.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185] gi|149129650|gb|EDM20864.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185] Length = 184 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L + + +INP I+ + +EGCLS+P VKR I V+YMD Sbjct: 61 TLDPLSEDYPEFKGFNKAYINPHILEIGGEEVSMEEGCLSLPGIHETVKRGNKIRVKYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 EDFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISALRKQMIKGKLNTMLKGK 173 >gi|126726109|ref|ZP_01741951.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] gi|126705313|gb|EBA04404.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] Length = 159 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 75/155 (48%), Positives = 102/155 (65%), Gaps = 1/155 (0%) Query: 15 RRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPM 73 ++++ PI ++ ++ L D+ML MY GIGLAA QIGVL RL+V+D ++ P+ Sbjct: 2 KKIATPIVDLSDELRVLADDMLATMYEAPGIGLAAPQIGVLERLIVLDCVKEEGADPRPV 61 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 NP+I SD+ SVY EGCLSIP+ A+V R A ++VR+M + DGL ATC Sbjct: 62 AMFNPEITASSDELSVYDEGCLSIPEIYAEVTRPAEVSVRWMGLDGAEHNETFDGLWATC 121 Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +QHE+DHLNG LFID+L LKR MIT+KM KL + Sbjct: 122 VQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRE 156 >gi|224023749|ref|ZP_03642115.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM 18228] gi|224016971|gb|EEF74983.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM 18228] Length = 184 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA Q+G+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVV 60 Query: 62 DLQ----DHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +L D + V+INP I+ D+ +EGCLS+P VKR I V Y+D Sbjct: 61 NLDVLSDDMPEFKDFKRVYINPHILETGDEMVSMEEGCLSLPGIHESVKRPDRIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N + +G LA +QHE DHL+G +FIDHLS L++ MI K++ +V + Sbjct: 121 ENMTAHDEWVEGYLARVMQHEFDHLDGTMFIDHLSSLRKQMIRGKLNNMVNGK 173 >gi|237716076|ref|ZP_04546557.1| peptide deformylase [Bacteroides sp. D1] gi|237722139|ref|ZP_04552620.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4] gi|262407688|ref|ZP_06084236.1| peptide deformylase [Bacteroides sp. 2_1_22] gi|294643796|ref|ZP_06721594.1| peptide deformylase [Bacteroides ovatus SD CC 2a] gi|294808456|ref|ZP_06767209.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b] gi|298480836|ref|ZP_06999031.1| peptide deformylase [Bacteroides sp. D22] gi|229443723|gb|EEO49514.1| peptide deformylase [Bacteroides sp. D1] gi|229447949|gb|EEO53740.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4] gi|262354496|gb|EEZ03588.1| peptide deformylase [Bacteroides sp. 2_1_22] gi|292640885|gb|EFF59105.1| peptide deformylase [Bacteroides ovatus SD CC 2a] gi|294444384|gb|EFG13098.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b] gi|295085225|emb|CBK66748.1| peptide deformylase [Bacteroides xylanisolvens XB1A] gi|298272859|gb|EFI14425.1| peptide deformylase [Bacteroides sp. D22] Length = 184 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L + +INP I+ + +EGCLS+P VKR I V+YMD Sbjct: 61 TLDPLSEEYPEFKDFNKAYINPHILEVGGEEVNMEEGCLSLPGIHETVKRGDKIRVKYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 ENFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173 >gi|300871518|ref|YP_003786391.1| peptide deformylase [Brachyspira pilosicoli 95/1000] gi|300689219|gb|ADK31890.1| peptide deformylase [Brachyspira pilosicoli 95/1000] Length = 177 Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + LVI+ D L+ S +E ++ +I+ LID+M E MY +G+GLAAVQ+GVL R++VI Sbjct: 1 MIRKLVIYGDDRLKEKSSYVENVDEEILTLIDDMFETMYKANGVGLAAVQVGVLKRVIVI 60 Query: 62 DLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D P + INP+II +D + +EGCLS P +V R I V+Y+D Sbjct: 61 SVPDFDDETKPDFKLALINPEIIWHGEDTEILEEGCLSFPKISDEVARYKEIKVKYIDTE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + QI+ A +A LQHE+DH NGI FID L ++ + K + +L Sbjct: 121 NKEQILDAKDYIAKVLQHEIDHTNGITFIDRLESYQKRRLKKDLKEL 167 >gi|228473115|ref|ZP_04057872.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624] gi|228275697|gb|EEK14474.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624] Length = 198 Score = 197 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+ PI K ++ LI++M + MY ++G+GLAA Q+G+ RL V+ Sbjct: 1 MILPIVAYGDPVLRKECMPIAKDYPELPKLIEDMYQTMYHSNGVGLAAPQVGLAIRLFVV 60 Query: 62 DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + FIN KI+ + + EGCLSIP DV R Sbjct: 61 DTEPFCENDDLSDAERDYLKGFKKAFINAKILKEEGEPWPFSEGCLSIPGISEDVLRKPT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + Y D + GL+A +QHE DH+ GILF DHLS K+ ++ K++ + + Sbjct: 121 IVIEYQDEHFATHTETFSGLVARVIQHEYDHIEGILFTDHLSSFKKQLLKNKLNNISNGK 180 >gi|325534093|pdb|3QU1|A Chain A, Peptide Deformylase From Vibrio Cholerae gi|325534094|pdb|3QU1|B Chain B, Peptide Deformylase From Vibrio Cholerae Length = 171 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y+T +GIGLAA Q+G +V Sbjct: 4 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D +R P+V INPK+++ S+ + QEGCLS+PDY ADV+R + V +D Sbjct: 63 VIDLSD--NRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 120 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 169 >gi|158313554|ref|YP_001506062.1| peptide deformylase [Frankia sp. EAN1pec] gi|238686856|sp|A8LE21|DEF_FRASN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158108959|gb|ABW11156.1| peptide deformylase [Frankia sp. EAN1pec] Length = 183 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+LR V+ P+ + ++ L+D++ + M G+GLAA Q+GV R+ Sbjct: 1 MSVRDIRLLGDPVLRTVADPVATFDRELRRLVDDLADTMRDAGGVGLAAPQLGVSLRIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 L D + INP + FS++ +EGCLS+P D++R + + + Sbjct: 61 Y-LDDSDEVGH---LINPVLGPFSEEMMDGEEGCLSLPGLAFDLRRPERVLAVGQNSHGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + G+L+ CLQHE DHL+GILFID L + + K + + + Sbjct: 117 PVTVEGSGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIREAEWSNE 166 >gi|254393357|ref|ZP_05008503.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|294811339|ref|ZP_06769982.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|326439928|ref|ZP_08214662.1| polypeptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|197706990|gb|EDY52802.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|294323938|gb|EFG05581.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064] Length = 186 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 74/149 (49%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL ++ +P+L + + L++++ MY+ +G+GLAA Q+GV R+ V D Sbjct: 13 VRPLSLYGNPVLHTPCETVTDFGPALGKLVEDLFATMYARNGVGLAANQMGVGLRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A V+R V D + Sbjct: 73 CPDDDEVRHLGHIVNPRLVAADGVEVRGPEGCLSLPGLEAPVERYDRAVVEGQDSDGGPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + G A CLQHE DHL+G ++ D L Sbjct: 133 RVEGTGFFARCLQHETDHLDGSVYADRLP 161 >gi|256374580|ref|YP_003098240.1| peptide deformylase [Actinosynnema mirum DSM 43827] gi|255918883|gb|ACU34394.1| peptide deformylase [Actinosynnema mirum DSM 43827] Length = 195 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +RP+++ + ++ LI +M E M + +G+GLAA QIGV RL V Sbjct: 1 MAVHPIRIAGDPVLHNPTRPVDEHDDELRALIADMYETMAAANGVGLAANQIGVDLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D + +NP + T D EGCLS P R+++ V Sbjct: 61 YDCPDDEGVRRRGEVVNPVLQTSDVPLGMPDPDDDYEGCLSAPGESYPTGRASWAKVTGT 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N + G A CLQHE DHL+G L++D L + +KKM K Sbjct: 121 DGNGDPVEVEGTGFFARCLQHETDHLDGYLYLDRLVG-RHKRASKKMIK 168 >gi|225012717|ref|ZP_03703152.1| peptide deformylase [Flavobacteria bacterium MS024-2A] gi|225003250|gb|EEG41225.1| peptide deformylase [Flavobacteria bacterium MS024-2A] Length = 195 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 97/179 (54%), Gaps = 12/179 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + P+L++ + I + ++ LI+NM E MY+++G+GLAA QIG+ RL VI Sbjct: 1 MILPIVAYGAPVLKKEAAEISEEYPNLDQLIENMWETMYASNGVGLAAPQIGLSIRLFVI 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + VFINP +I + EGCLSIPD R DV R Sbjct: 61 DTAPFSEDDELDELEAETLKSFKKVFINPVVIEEDGSLWEFNEGCLSIPDVREDVSRHER 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I + Y D + Q + GL A +QHE DH+ G+LF DHL+ LKR ++ +++ + + Sbjct: 121 IKIHYFDQQFKEQELVLTGLAARVVQHEYDHIEGVLFTDHLTPLKRRLLKNRLNSISKG 179 >gi|39995240|ref|NP_951191.1| polypeptide deformylase [Geobacter sulfurreducens PCA] gi|39982002|gb|AAR33464.1| polypeptide deformylase [Geobacter sulfurreducens PCA] Length = 182 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP+L++ + P+ IN L+ +M E MY G+GLAA QIGV R++VI Sbjct: 16 MVRTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 75 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ R +V INP II + S +EGCLS+P Y A+V R + V+ ++ + Sbjct: 76 DVSQRDERPELIVCINPVII-HGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEE 134 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA QHE+DHL+G+LF+DHLS LK++M KK ++ + Sbjct: 135 VVHRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTEEE 182 >gi|160893328|ref|ZP_02074115.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50] gi|156865020|gb|EDO58451.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50] Length = 153 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 5/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D +LR+ +P+ ++ + LID+M + MY +G+GLAA Q+G++ R+VV Sbjct: 1 MATRKIRIDGDSVLRKKCKPVTEMTPRLSQLIDDMFDTMYEANGVGLAAPQVGIVKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D ++P+ INP+II S + EGCLS+P V R + + +D + Sbjct: 61 IDIGD----EHPLTLINPEIIETSGE-QTGDEGCLSLPGKVGQVTRPMHVVCKALDRDMN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +GLLA + HE DHL GIL+ D + Sbjct: 116 EITVTGEGLLARAICHETDHLEGILYKDKVED 147 >gi|312195559|ref|YP_004015620.1| peptide deformylase [Frankia sp. EuI1c] gi|311226895|gb|ADP79750.1| peptide deformylase [Frankia sp. EuI1c] Length = 183 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR + + + ++ L++++ E M+ G GLAA Q+GV R+ Sbjct: 1 MAVRDIRLFGDPVLRTKAEQVTTFDKELRKLVNDLGETMWEASGAGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 L D + INP + FS++ +EGCLS+P ++KR + + Sbjct: 61 F-LDDDDEIDH---LINPVLGPFSEELQDGEEGCLSLPGLSFELKRPERVLAIGQNMYGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + G+++ CLQHE DHL+GILFID L R + K + + Sbjct: 117 PVQVEGSGIVSRCLQHETDHLDGILFIDKLDRETKKAAMKAIREAEW 163 >gi|268316440|ref|YP_003290159.1| peptide deformylase [Rhodothermus marinus DSM 4252] gi|262333974|gb|ACY47771.1| peptide deformylase [Rhodothermus marinus DSM 4252] Length = 189 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 65/177 (36%), Positives = 108/177 (61%), Gaps = 9/177 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ DPILR ++P+ + ++ L+D+M+E M++ GIGLAA Q+G R+ V+ Sbjct: 1 MVLPIHVYGDPILRERAQPVAADSPELQQLLDDMVETMHAASGIGLAAPQVGRRERVFVV 60 Query: 62 DLQDHAHR---------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 DL PM FINP+I+ S++ ++EGCLSIPD R V+R + + Sbjct: 61 DLTPMKEELEAEGETLPPMPMFFINPEIVWTSEEQCSFEEGCLSIPDVREVVERPVAVRI 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 RY+D + Q + A G+LA +QHE DHL GILFID +S +R ++ +++ ++ + + Sbjct: 121 RYLDRQFRPQELEARGMLARVIQHEYDHLEGILFIDRISAFRRQLLRRRLREIARGQ 177 >gi|330993401|ref|ZP_08317336.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1] gi|329759431|gb|EGG75940.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1] Length = 180 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 70/166 (42%), Positives = 107/166 (64%), Gaps = 1/166 (0%) Query: 5 PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+++ P +LR+ +R + + + +I M MY GIGLAA Q+G+ R ++D+ Sbjct: 14 PILVAPQAVLRQKTRLVRPEDMDGLRTIIPRMFAAMYQAPGIGLAAPQVGLGMRFAIVDV 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D +NP+V INP++I +D + +EGCLS+P+ A+V R + VRY D + Q Sbjct: 74 SDKDGPRNPIVLINPEVIAETDSMAAREEGCLSLPNQYAEVVRPEAVRVRYQDMEGKVQE 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLATCLQHE+DHL GILF+DHLS LKR+MI ++++K + + Sbjct: 134 LEADDLLATCLQHEIDHLEGILFVDHLSTLKRNMIMRRLAKEQRQK 179 >gi|88607030|ref|YP_505871.1| peptide deformylase [Anaplasma phagocytophilum HZ] gi|88598093|gb|ABD43563.1| peptide deformylase [Anaplasma phagocytophilum HZ] Length = 187 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 16/185 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +PLV+ PD L S + + + +L+++M + MY+ GIGLAAVQ+GV R+ Sbjct: 1 MSVRPLVVLPDSRLFLCSEEVRETDFCEKFNSLVEDMFDTMYAEQGIGLAAVQVGVHKRI 60 Query: 59 VVIDLQDHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 VIDL PMV INP+I+ S D +EGCLS+PD R V Sbjct: 61 FVIDLGPKTEESSEIADDPDGYHSTCGPMVVINPEIVEKSVDLVSMEEGCLSVPDQRELV 120 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R I ++Y D + + +I+ A GLL+ CLQHE+DHLNG +F+ H+S+LKRD++ +KM K Sbjct: 121 VRPERIVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNGTVFLKHISKLKRDLVMQKMRK 180 Query: 165 LVQLR 169 LR Sbjct: 181 AASLR 185 >gi|291612480|ref|YP_003522637.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] gi|291582592|gb|ADE10250.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] Length = 167 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L +V++ +E+IN L+ +M E MY+ GIGLAA Q+ RL+V Sbjct: 1 MAILPIIQYPDERLHKVAKKVEQINEATRKLVRDMAETMYAAPGIGLAATQVDKHIRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+++ D +EGCLS+P V R+ F+TV +D + + Sbjct: 61 IDVSET--HDDLKVFINPELVDSMGDKE-NEEGCLSVPGIYEKVTRAEFVTVNALDEHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G +F++ LS LK+ I K+ K + Sbjct: 118 PFTLNAEGLLAVCIQHEMDHLQGRVFVEKLSHLKQTRIRAKLKKQRRE 165 >gi|295094723|emb|CBK83814.1| peptide deformylase [Coprococcus sp. ART55/1] Length = 155 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 5/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+V RP+EK++ + LID+M + MY +G+GLAA Q+G+L R+VV Sbjct: 1 MAIRNIRYDGDDILRKVCRPVEKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D NP+ INP I SD +EGCLS+P V R + + D N + Sbjct: 61 IDVGD----DNPLCLINPVITE-SDGEQTGEEGCLSLPGKFGTVTRPMHVICKAFDENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +GLLA + HELDHL+G L+ D + Sbjct: 116 EFTVEGEGLLARAICHELDHLDGKLYKDLVED 147 >gi|51892481|ref|YP_075172.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863] gi|81692121|sp|Q67PR5|DEF_SYMTH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|51856170|dbj|BAD40328.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863] Length = 217 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 62/154 (40%), Positives = 89/154 (57%), Gaps = 3/154 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P +LR+ ++P+ KIN+ I L+D+M E MY+ G+GLAA Q+GV RL+V Sbjct: 1 MAILEIVKEPAEVLRKKAKPVTKINASIRKLLDDMTETMYAAPGVGLAAPQVGVSKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D QD INP+I+ + + EGCLSIP DV R + V +D + Sbjct: 61 VDPQD--GSGQLYQLINPEIVKA-EGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I A+G LA QHE+DHL+GIL+ D + L+ Sbjct: 118 KVWIDAEGYLARIFQHEIDHLDGILYTDKCTNLR 151 >gi|326335909|ref|ZP_08202086.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691873|gb|EGD33835.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 198 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+V PI ++ LI++M + MY + G+GLAA Q+G+ RL V+ Sbjct: 1 MILPIIAYGDPVLRKVCEPITADYPELSKLIEDMFQTMYKSHGVGLAAPQVGLPIRLFVV 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + ++ FIN KII+ ++ EGCLSIP DV R Sbjct: 61 DTIGFSENEDLTREEKEYLKNFKRPFINAKIISEEGTPWMFNEGCLSIPGINEDVSRKPT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + Y D GL+A +QHE DH G LF D+LS K+ ++ K++ + + Sbjct: 121 IEIEYQDEQFNIHRETFSGLVARVIQHEYDHTEGKLFTDYLSSFKKQLLKNKLNNISNGK 180 >gi|258622314|ref|ZP_05717340.1| peptide deformylase [Vibrio mimicus VM573] gi|258624834|ref|ZP_05719762.1| peptide deformylase [Vibrio mimicus VM603] gi|262164774|ref|ZP_06032512.1| peptide deformylase [Vibrio mimicus VM223] gi|262173015|ref|ZP_06040692.1| peptide deformylase [Vibrio mimicus MB-451] gi|258582832|gb|EEW07653.1| peptide deformylase [Vibrio mimicus VM603] gi|258585638|gb|EEW10361.1| peptide deformylase [Vibrio mimicus VM573] gi|261890373|gb|EEY36360.1| peptide deformylase [Vibrio mimicus MB-451] gi|262027154|gb|EEY45821.1| peptide deformylase [Vibrio mimicus VM223] Length = 168 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y+T +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D +R PMV INPK+++ S+ + QEGCLS+PDY ADV+R + V +D + Sbjct: 60 VIDLSD--NRDEPMVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I + LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLKIESSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|218887129|ref|YP_002436450.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758083|gb|ACL08982.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 184 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 2/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP L I +I +I L +M E MY DGIGLAA Q+G RL+V+ Sbjct: 1 MIREVLQYPDPRLAVECEDITEITDEIRQLAADMAETMYRQDGIGLAAPQVGEHCRLIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 D+ R+ M F+NP++ + D +EGCLS+P YRA V RS + + D + Sbjct: 61 DVSGPEKREALMTFVNPRL-ELTGDKVDSEEGCLSVPGGYRATVTRSDTVRLTARDLDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA CLQHE+DHL G LFIDH+SRLKR + ++ K+ + Sbjct: 120 EVCMDADGLLAVCLQHEVDHLKGTLFIDHISRLKRTLYDSRVKKMQK 166 >gi|198275233|ref|ZP_03207764.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135] gi|198271816|gb|EDY96086.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135] Length = 184 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 97/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ ++ I + LI NM E M DG+GLAA QIG+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRQEAQDITPDYPGLKELITNMFETMDRADGVGLAAPQIGLPIRVVVV 60 Query: 62 DLQ----DHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +L D + +INP I+ + +EGCLS+P VKR I V Y+D Sbjct: 61 NLDVLSDDMPEFKDFKRTYINPHILETGGELVSMEEGCLSLPGIHESVKRPDKIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N Q + +G LA +QHE DHL+G +FIDHLS L++ MI K++ +V + Sbjct: 121 ENMQPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIRGKLNSMVNGK 173 >gi|308272079|emb|CBX28687.1| Peptide deformylase [uncultured Desulfobacterium sp.] Length = 177 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 103/170 (60%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++P++ IN+D+ +ID+M+E MY GIGLA++QIG ++V Sbjct: 7 MAILDILTYPDRFLTNTAKPVKGINADLQKIIDDMIETMYDAPGIGLASIQIGCDKSMIV 66 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ H+++ V +NP II + EGCLS+PD R+DVKR+A + V +D Sbjct: 67 YDIDQTEHKRSIQVLLNPVIIETDGEIVSNNEGCLSVPDLRSDVKRAASVIVEALDREGN 126 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A LA LQHE+DHLNG+LF+D +S LKR++ + + K + + Sbjct: 127 PLKIEAHDQLAVVLQHEIDHLNGVLFLDRISTLKRELYKRHVKKQQKKNE 176 >gi|311894799|dbj|BAJ27207.1| putative polypeptide deformylase [Kitasatospora setae KM-6054] Length = 181 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ IF DP+LR ++P+ + ++ L+ ++ + M G GLAA Q+GV R+ Sbjct: 1 MAVQPIRIFGDPVLRATAKPVTVFDKELRKLVKDLTDTMLEAPGAGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ INP + + +++ EGCLS+P R D +R+ + + ++ + + Sbjct: 61 YNVDGVVG-----HLINPDL-SLTEEEQDGPEGCLSLPGLRFDTRRAYGVVAKGVNMHGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + LLA C+QHE DHL+GI+FID L R R K + + Sbjct: 115 PVEVEGTQLLARCIQHETDHLDGIIFIDRLDRETRKAAMKAIREAEWG 162 >gi|91205375|ref|YP_537730.1| peptide deformylase [Rickettsia bellii RML369-C] gi|91068919|gb|ABE04641.1| Polypeptide deformylase [Rickettsia bellii RML369-C] Length = 175 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 72/172 (41%), Positives = 112/172 (65%), Gaps = 5/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+ + ++N+ I +D+M+E MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH K P + +NP+II S++ + EGC+S+P+ R ++ RS I +RY+ Sbjct: 61 IDIKDHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D + + Q + A+ LA +QHE DHL G L ID+LS +KRD+ +K+ KL + Sbjct: 121 DYHNKPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRDIALRKLRKLKK 172 >gi|327402962|ref|YP_004343800.1| peptide deformylase [Fluviicola taffensis DSM 16823] gi|327318470|gb|AEA42962.1| peptide deformylase [Fluviicola taffensis DSM 16823] Length = 198 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 65/181 (35%), Positives = 94/181 (51%), Gaps = 14/181 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L++ + I+ ++ LI++M E MY G+GLAA QI RL V+ Sbjct: 1 MILPIVAYGDPVLKKEAVEIDANYPELKKLIEDMFETMYEASGVGLAAPQINRSIRLFVV 60 Query: 62 DLQDHAH--------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 D A VFINP I + + + EGCLSIP R +V R Sbjct: 61 DGSPFAETDEDEEEDPKAEGMEGFKRVFINPIIEEETGESWGFHEGCLSIPKIREEVMRK 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I + Y D N Q + DG A +QHE DH+ G+LF DHLS LKR +++K++ + Q Sbjct: 121 EKIRITYYDENWQLHDEWFDGYKARIIQHEYDHIEGVLFTDHLSVLKRRLLSKRLQNISQ 180 Query: 168 L 168 Sbjct: 181 G 181 >gi|302877267|ref|YP_003845831.1| peptide deformylase [Gallionella capsiferriformans ES-2] gi|302580056|gb|ADL54067.1| peptide deformylase [Gallionella capsiferriformans ES-2] Length = 167 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +++ + ++N L+ +M E MY+ G+GLAA Q+ V +++V Sbjct: 1 MAILQILQYPDERLHTIAKKVVQVNDVTRKLVQDMAETMYAAPGVGLAATQVNVHEQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + +VFINP+I+ S + +EGCLS+P +V+R+ I+VR ++ + Sbjct: 61 VDVSET--HDELLVFINPEILHRSGE-QEGEEGCLSVPGIYENVRRADKISVRALNQQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+G LA C+QHE+DHL+G +F+++LS+LK+ + K+ K + Sbjct: 118 SFTLDAEGFLAVCIQHEVDHLHGRVFVEYLSQLKQSRLRAKLKKRRRE 165 >gi|262403341|ref|ZP_06079901.1| peptide deformylase [Vibrio sp. RC586] gi|262350840|gb|EEY99973.1| peptide deformylase [Vibrio sp. RC586] Length = 168 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y+T +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D +R PMV INPK+++ S+ + QEGCLS+PDY ADV+R + V +D + Sbjct: 60 VIDLSD--NRDEPMVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|51244598|ref|YP_064482.1| peptide deformylase [Desulfotalea psychrophila LSv54] gi|81692939|sp|Q6AQ98|DEF_DESPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|50875635|emb|CAG35475.1| probable peptide deformylase [Desulfotalea psychrophila LSv54] Length = 169 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 68/166 (40%), Positives = 97/166 (58%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +PDP+LR+ + I + ++ L ++M E MY GIGLAA QIG +LVV Sbjct: 1 MAILKICTYPDPVLRKETVAITVFDEKLVKLTEDMAETMYDAPGIGLAAPQIGESLKLVV 60 Query: 61 IDLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + ++ MV NP+I+ ++ V +EGCLS+P+ A VKR I V Y D N Sbjct: 61 VSTARREDSKQEYMVMANPEIVEK-EESQVDEEGCLSVPELLAMVKRYRKIKVNYQDING 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + + A LQHE+DHLNGILF+DHLS LKR++ KK+ K Sbjct: 120 EPCSMTVEDRFAVVLQHEIDHLNGILFLDHLSSLKRNLYKKKVKKW 165 >gi|163841093|ref|YP_001625498.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] gi|162954569|gb|ABY24084.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] Length = 189 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 84/163 (51%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR V+ P+ + ++ LI +M E M DG+GLAA Q+GV ++ Sbjct: 1 MAILEIRIMGDPVLRTVAEPVTEFGPELAKLIADMFETMDDVDGVGLAAPQVGVSKQIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + INP + + EGCLS+P V+R VR MD N Sbjct: 61 YRIGELSG-----HVINPVLENGEANQPSGAEGCLSVPGLGYAVERKQTSRVRGMDMNGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 +I ADG+LA C+QHE DHLNG LFID L+ R + + Sbjct: 116 PVLIEADGMLARCMQHETDHLNGKLFIDRLTGDDRRAAMRTIR 158 >gi|33357295|pdb|1LME|A Chain A, Crystal Structure Of Peptide Deformylase From Thermotoga Maritima gi|33357296|pdb|1LME|B Chain B, Crystal Structure Of Peptide Deformylase From Thermotoga Maritima Length = 176 Score = 196 bits (500), Expect = 8e-49, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 95/162 (58%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D+ Sbjct: 16 IRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVG- 74 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I+ + V +EG LS P+ +++RS I V+Y + ++ Sbjct: 75 ----NGPVAVINPEILEIDPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 130 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G A QHE DHLNG+L ID +S KR ++ KK+ + + Sbjct: 131 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 172 >gi|163756828|ref|ZP_02163937.1| peptide deformylase [Kordia algicida OT-1] gi|161323217|gb|EDP94557.1| peptide deformylase [Kordia algicida OT-1] Length = 196 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 103/180 (57%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V F DP+LR+V++ I ++ L++NM E MY+ G+GLAA Q+G+ RL +I Sbjct: 1 MILPIVAFGDPVLRKVAKDITPDYPNLDTLLENMFETMYNAYGVGLAAPQVGLPIRLFMI 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + VFIN KII + + V+ EGCLSIPD R DV R Sbjct: 61 DATGFAEDEELDEEQRKQLEGMKKVFINAKIIERNGEPWVFNEGCLSIPDIREDVFRPES 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + YMD N + + DGL A +QHE DH+ GILF D LS LKR ++ +++ + + R Sbjct: 121 IKIEYMDENFEKHVEEYDGLAARVIQHEYDHIEGILFTDKLSALKRRLLKGRLTNISRGR 180 >gi|68171578|ref|ZP_00544952.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88658603|ref|YP_506903.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas] gi|67999004|gb|EAM85681.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88600060|gb|ABD45529.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas] Length = 188 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 99/181 (54%), Gaps = 17/181 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PD L S +EK++ I L+D+M E M++ G+GLAAVQ+GV R++V Sbjct: 1 MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILV 60 Query: 61 IDLQDHAH-----------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 +++ + P INPKI+ S + +EGCLS+P Y Sbjct: 61 MNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDY 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + R I V+Y+D N II A G LA CLQHE+DHLNG +F+ +LS+ KRD +K+ Sbjct: 121 IVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVK 180 Query: 164 K 164 K Sbjct: 181 K 181 >gi|220912431|ref|YP_002487740.1| peptide deformylase [Arthrobacter chlorophenolicus A6] gi|219859309|gb|ACL39651.1| peptide deformylase [Arthrobacter chlorophenolicus A6] Length = 204 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR V+ P+ + ++ L+ +M E M DG GLAA QIGV R+ Sbjct: 1 MAILNIRIIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQIGVSKRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + INP + D + EGCLSIP V+R V +D + Sbjct: 61 YRIDGVEG-----HIINPVLENSDDYQPDHVEGCLSIPGLGFPVRRFRATRVTGVDMHGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +G+LA C QHE DHL+G+L+ D L R + + Sbjct: 116 PVSLEGEGMLARCFQHENDHLDGVLYTDRLEGEDRKAALRSIR 158 >gi|239617141|ref|YP_002940463.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1] gi|239505972|gb|ACR79459.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1] Length = 164 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+LR S I+K + ++ + + +MY DG+GLAA Q+ VL R+ V D Sbjct: 3 IVYIGNPVLREKSEAIKKFDDNLKTFVKELTSIMYKEDGVGLAAPQVAVLKRMFVFD--- 59 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P V INP+I+ S + + +EGCLSIP ADV+R ++ +RY D + Sbjct: 60 --DGSGPKVIINPEILEKSKELVIMEEGCLSIPGVYADVERPEWVKMRYQDVDGNVHEEL 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G +QHE DHLNGILFID+LS K+ MI K+ ++++ + Sbjct: 118 FEGYAGRIVQHEYDHLNGILFIDYLSPAKKMMIRPKLREIMKGK 161 >gi|154490274|ref|ZP_02030535.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC 43184] gi|154089166|gb|EDN88210.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC 43184] Length = 185 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 5/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + + D+ L+ NM E MY+ DG+GLAA Q+G+ RL+VI Sbjct: 1 MILPVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVI 60 Query: 62 DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + INP + S++ +EGCLS+P V RSA + V+Y+D Sbjct: 61 DADVMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSAKVRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + +G A +QHE +HL G +FID++S ++R + K++ +++ Sbjct: 121 EDLKEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIKG 172 >gi|27367269|ref|NP_762796.1| peptide deformylase [Vibrio vulnificus CMCP6] gi|320159078|ref|YP_004191456.1| peptide deformylase [Vibrio vulnificus MO6-24/O] gi|31076649|sp|Q8D5P5|DEF2_VIBVU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|27358838|gb|AAO07786.1| peptide deformylase [Vibrio vulnificus CMCP6] gi|319934390|gb|ADV89253.1| peptide deformylase [Vibrio vulnificus MO6-24/O] Length = 168 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++LE +Y T +G+GLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKEVTDV-AAVQTLIDDLLETLYETDNGVGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + +R P+V +NPK+++ S+ + QEGCLS+PDY ADV+R + V +D + Sbjct: 60 VIDLSE--NRDEPLVLVNPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K +LR Sbjct: 117 KPLRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166 >gi|29345830|ref|NP_809333.1| peptide deformylase [Bacteroides thetaiotaomicron VPI-5482] gi|253567816|ref|ZP_04845227.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6] gi|298384715|ref|ZP_06994275.1| peptide deformylase [Bacteroides sp. 1_1_14] gi|39930885|sp|Q8AAP4|DEF_BACTN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|29337723|gb|AAO75527.1| peptide deformylase(PDF) [Bacteroides thetaiotaomicron VPI-5482] gi|251841889|gb|EES69969.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6] gi|298262994|gb|EFI05858.1| peptide deformylase [Bacteroides sp. 1_1_14] Length = 184 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDITPEYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L + + +INP II + +EGCLS+P VKR I V+YMD Sbjct: 61 TLDPLSEDYPEFKDFNKAYINPHIIEVGGEEVSMEEGCLSLPGIHESVKRGNKIRVKYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDHLS L++ MI K++ +++ + Sbjct: 121 ENFVEHDEVVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIRGKLNTMLKGK 173 >gi|269119796|ref|YP_003307973.1| peptide deformylase [Sebaldella termitidis ATCC 33386] gi|268613674|gb|ACZ08042.1| peptide deformylase [Sebaldella termitidis ATCC 33386] Length = 162 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 96/165 (58%), Gaps = 5/165 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ + +P+LR VS+ + +I +I ++D M+E M G+GLAA Q+G+ R V ++ Sbjct: 3 IIYYGNPVLREVSKEVTEITDEIRQILDEMVETMREESGVGLAANQVGLTQRFFVGEVDG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + INP+II F + +EGCLSIP VKR I VRY + + Sbjct: 63 NVKK-----IINPEIIEFGKEEIELEEGCLSIPGIYKRVKRPEKIKVRYQNEKGETVEEE 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + A QHELDHL+GILFID +S L + +I+K+++++ + + Sbjct: 118 LNEVWARVFQHELDHLDGILFIDKISPLNKRLISKRLAQIKKEGN 162 >gi|157826975|ref|YP_001496039.1| peptide deformylase [Rickettsia bellii OSU 85-389] gi|157802279|gb|ABV79002.1| peptide deformylase [Rickettsia bellii OSU 85-389] Length = 175 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 71/172 (41%), Positives = 112/172 (65%), Gaps = 5/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+ + ++N+ I +D+M+E MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH K P + +NP+II S++ + EGC+S+P+ R ++ RS I +RY+ Sbjct: 61 IDIKDHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D + + Q + A+ LA +QHE DHL G L ID+LS +KR++ +K+ KL + Sbjct: 121 DYHNKPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRNIALRKLRKLKK 172 >gi|88855001|ref|ZP_01129666.1| polypeptide deformylase [marine actinobacterium PHSC20C1] gi|88815529|gb|EAR25386.1| polypeptide deformylase [marine actinobacterium PHSC20C1] Length = 205 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 4/154 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++I DP+L + P+ +S + L+ +M E M G+GLAA Q+GV R+ V Sbjct: 19 MAVLPIIITGDPVLHTPANPVTAFDSSLNTLVSDMFETMEEAPGVGLAAPQVGVPLRVFV 78 Query: 61 IDLQDHAHRKNPMVFINPKI----ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D D V INP++ + +EGCLSIP R + R+ + +R +D Sbjct: 79 YDWIDDDDAHWRGVAINPELWHTPTPVYEPGEADEEGCLSIPGERFGLVRAERVILRAVD 138 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + I A G LA QHE DHL+G+L+ D L Sbjct: 139 LDQKPFEIEASGWLARIFQHEYDHLDGVLYADRL 172 >gi|255692008|ref|ZP_05415683.1| peptide deformylase [Bacteroides finegoldii DSM 17565] gi|260622254|gb|EEX45125.1| peptide deformylase [Bacteroides finegoldii DSM 17565] Length = 184 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L + + +INP I+ + +EGCLS+P VKR I V+YMD Sbjct: 61 TLDPLSEDYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 ENFVEYEEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173 >gi|330445859|ref|ZP_08309511.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490050|dbj|GAA04008.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 173 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 75/172 (43%), Positives = 108/172 (62%), Gaps = 5/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58 M ++ P+P LR + + + ++ I LID+ML+ MY T +GIGLAA Q+G + Sbjct: 1 MAVLEILTEPNPKLRVQAEEVTDVKAEHIQTLIDDMLQTMYETGNGIGLAAPQVGRKESI 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +VIDL + R P VF+NPKI+ ++ V QEGCLS+PDY ADV+R I + +D + Sbjct: 61 IVIDLSE--ERNEPQVFVNPKIV-RGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + D LA LQHE+DHL GILFID+LS LKR M KK+ K +++++ Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKYLKMQE 169 >gi|294628122|ref|ZP_06706682.1| peptide deformylase [Streptomyces sp. e14] gi|292831455|gb|EFF89804.1| peptide deformylase [Streptomyces sp. e14] Length = 213 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 83/167 (49%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + D L R + + ++ L++++ MY+ G+GLAA Q+G+ R+ V D Sbjct: 38 VRPLTLLGDAALAAPCREVTEFGPELAALVEDLFATMYAARGVGLAANQVGLDLRVFVYD 97 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A V+R V + Sbjct: 98 CPDDEDVRHLGHLVNPRLVAADGLLFRGPEGCLSLPGLEAGVERHDHAVVEGFTVAGEPV 157 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G A CLQHE DHL+G L++DHL+ +R + ++ ++ R Sbjct: 158 TVEGTGFFARCLQHECDHLDGRLYVDHLTGWRRRKVLRQAARAPWNR 204 >gi|213965569|ref|ZP_03393763.1| peptide deformylase [Corynebacterium amycolatum SK46] gi|213951728|gb|EEB63116.1| peptide deformylase [Corynebacterium amycolatum SK46] Length = 167 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+L + + ++ + +LID+M + M G+GLAA Q+GVL R+ V Sbjct: 1 MAVREVRLFGDPVLLSKAETVTDFDATLSHLIDDMFDTMDEQQGVGLAANQVGVLQRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +NP+ D+ EGCLSIP V R A + V D + Sbjct: 61 YDCNGTRG-----HIVNPEWEAIGDETVHEIEGCLSIPGINGPVTRHARVRVTGQDRHGT 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LLA C+QHE DHL+G+LF+ L +R + + + Sbjct: 116 PVSFEADDLLARCVQHESDHLDGVLFLKRLEGDERKTAMRSLRE 159 >gi|51473406|ref|YP_067163.1| peptide deformylase [Rickettsia typhi str. Wilmington] gi|81692314|sp|Q68XG1|DEF_RICTY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|51459718|gb|AAU03681.1| PDF [Rickettsia typhi str. Wilmington] Length = 175 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PD L++ S+P+ + + +MLE MY+ +G GLAAVQ+GVL R++V Sbjct: 1 MSIYSIVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNANGAGLAAVQVGVLQRILV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++ H + P + +NP+II S + EGC+S+P+ R +V R + +RY+ Sbjct: 61 IDIKAHDPVERPKDFYPLFIVNPEIIEQSTELVTANEGCISLPEQRIEVMRPESVKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + Q + A+ LA +QHE DHL G L +D+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKL 170 >gi|240113996|ref|ZP_04728486.1| peptide deformylase [Neisseria gonorrhoeae MS11] gi|240122199|ref|ZP_04735161.1| peptide deformylase [Neisseria gonorrhoeae PID24-1] gi|240124639|ref|ZP_04737525.1| peptide deformylase [Neisseria gonorrhoeae SK-92-679] gi|254494753|ref|ZP_05107924.1| polypeptide deformylase [Neisseria gonorrhoeae 1291] gi|268600061|ref|ZP_06134228.1| polypeptide deformylase [Neisseria gonorrhoeae MS11] gi|268683213|ref|ZP_06150075.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679] gi|226513793|gb|EEH63138.1| polypeptide deformylase [Neisseria gonorrhoeae 1291] gi|268584192|gb|EEZ48868.1| polypeptide deformylase [Neisseria gonorrhoeae MS11] gi|268623497|gb|EEZ55897.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679] Length = 161 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 3/160 (1%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +PD L V++P+E+++ I L+ +M E MY + GIGLAA Q+ V R+VV+DL + Sbjct: 2 QYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVVMDLTE-- 59 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R P VFINP I+ + Y+EGCLS+P V R+ + V ++ + + AD Sbjct: 60 DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKFTLEAD 118 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 GLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 119 GLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 158 >gi|15600920|ref|NP_232550.1| peptide deformylase [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587986|ref|ZP_01677739.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121729670|ref|ZP_01682131.1| polypeptide deformylase [Vibrio cholerae V52] gi|147672038|ref|YP_001215964.1| peptide deformylase [Vibrio cholerae O395] gi|153819711|ref|ZP_01972378.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|153822662|ref|ZP_01975329.1| polypeptide deformylase [Vibrio cholerae B33] gi|153825061|ref|ZP_01977728.1| peptide deformylase [Vibrio cholerae MZO-2] gi|153830707|ref|ZP_01983374.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|227811776|ref|YP_002811786.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|229506685|ref|ZP_04396194.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229510520|ref|ZP_04400000.1| peptide deformylase [Vibrio cholerae B33] gi|229517348|ref|ZP_04406793.1| peptide deformylase [Vibrio cholerae RC9] gi|229527868|ref|ZP_04417259.1| peptide deformylase [Vibrio cholerae 12129(1)] gi|229605159|ref|YP_002875863.1| peptide deformylase [Vibrio cholerae MJ-1236] gi|254850416|ref|ZP_05239766.1| peptide deformylase 2 [Vibrio cholerae MO10] gi|297579720|ref|ZP_06941647.1| polypeptide deformylase [Vibrio cholerae RC385] gi|298500007|ref|ZP_07009813.1| peptide deformylase [Vibrio cholerae MAK 757] gi|23396575|sp|Q9KN16|DEF2_VIBCH RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|9657539|gb|AAF96063.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547784|gb|EAX57873.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121628568|gb|EAX61048.1| polypeptide deformylase [Vibrio cholerae V52] gi|126509754|gb|EAZ72348.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|126519819|gb|EAZ77042.1| polypeptide deformylase [Vibrio cholerae B33] gi|146314421|gb|ABQ18961.1| polypeptide deformylase [Vibrio cholerae O395] gi|148873804|gb|EDL71939.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|149741386|gb|EDM55420.1| peptide deformylase [Vibrio cholerae MZO-2] gi|227010918|gb|ACP07129.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|227014777|gb|ACP10986.1| polypeptide deformylase [Vibrio cholerae O395] gi|229334230|gb|EEN99715.1| peptide deformylase [Vibrio cholerae 12129(1)] gi|229345384|gb|EEO10357.1| peptide deformylase [Vibrio cholerae RC9] gi|229352965|gb|EEO17905.1| peptide deformylase [Vibrio cholerae B33] gi|229357036|gb|EEO21954.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229371645|gb|ACQ62067.1| peptide deformylase [Vibrio cholerae MJ-1236] gi|254846121|gb|EET24535.1| peptide deformylase 2 [Vibrio cholerae MO10] gi|297535366|gb|EFH74200.1| polypeptide deformylase [Vibrio cholerae RC385] gi|297541988|gb|EFH78039.1| peptide deformylase [Vibrio cholerae MAK 757] Length = 168 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y+T +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D +R P+V INPK+++ S+ + QEGCLS+PDY ADV+R + V +D Sbjct: 60 VIDLSD--NRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|148272776|ref|YP_001222337.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830706|emb|CAN01646.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 188 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +R +E + D+ L+ +M + M G+GLAA Q+GV R+ V Sbjct: 1 MAVLPIRITGDPVLHAPAREVEAFDDDLRTLVADMFDTMDEAPGVGLAAPQVGVPLRVFV 60 Query: 61 IDLQDHAHRK------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + NP +FI P + +D+ +EGCLS P R + R+ +R Sbjct: 61 YSYETDEGEPLRGVAVNPDLFITPVAVREADE-DTEEEGCLSFPGERFPLVRADRAILRA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D + + I A G A LQHE DHL+G+L+ D L+ + R + K + K Sbjct: 120 VDLDGRPFEIQAAGWFARILQHEFDHLDGLLYTDRLAHVHRKPVAKVIRK 169 >gi|37676994|ref|NP_937390.1| peptide deformylase [Vibrio vulnificus YJ016] gi|39930924|sp|Q7MCQ2|DEF1_VIBVY RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|37201538|dbj|BAC97360.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016] Length = 168 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++LE +Y T +G+GLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKEVTDV-AAVQTLIDDLLETLYETDNGVGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + +R P+V +NPK+++ S+ + QEGCLS+PDY ADV+R + V +D N Sbjct: 60 VIDLSE--NRDEPLVLVNPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDRNG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K +LR Sbjct: 117 KELRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166 >gi|296117966|ref|ZP_06836549.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] gi|295969197|gb|EFG82439.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] Length = 169 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + ++ DP+L + I + + + L ++MLE M G+GLAA QIG+L R+ V Sbjct: 1 MTVKAIRLYGDPVLTTRAGEITEFDESLEKLAEDMLETMDDAGGVGLAANQIGLLKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP D V EGCLSIPD +R ++V D + Sbjct: 61 YDCS-SVETGMRGAIINPVWEAVGDKTQVGNEGCLSIPDISMPTERFETVSVSGQDVHGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + GL+A C+QHE DHL+G+LF+ L R ++ Sbjct: 120 PVSMVVSGLMARCVQHETDHLDGVLFLQRLETDDRKQAMAQIR 162 >gi|258515528|ref|YP_003191750.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] gi|257779233|gb|ACV63127.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] Length = 164 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V DP+LR+ + P++ INS I L+ NM + MY G+GLAA QIG+ R+VV Sbjct: 1 MAIYNIVEVGDPVLRQKANPVKNINSSIHKLLKNMADTMYDAKGVGLAAPQIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INP+II S EGCLSIP V R++ I V+ ++ N + Sbjct: 61 VDIGE-----GLLELINPRIIKASG-QETDTEGCLSIPGTLGQVPRASKIQVQALNRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G +A +QHELDHL+GILFID L++ + + + Sbjct: 115 QVEYHVKGFMARAVQHELDHLDGILFIDKAESLRKQFEDVVLENKAKAK 163 >gi|153802627|ref|ZP_01957213.1| polypeptide deformylase [Vibrio cholerae MZO-3] gi|124121843|gb|EAY40586.1| polypeptide deformylase [Vibrio cholerae MZO-3] Length = 168 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y+T +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D +R P+V INPK+++ S+ + QEGCLS+PDY ADV+R + V +D Sbjct: 60 VIDLSD--NRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|258541770|ref|YP_003187203.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256632848|dbj|BAH98823.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256635905|dbj|BAI01874.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-03] gi|256638960|dbj|BAI04922.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-07] gi|256642014|dbj|BAI07969.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-22] gi|256645069|dbj|BAI11017.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-26] gi|256648124|dbj|BAI14065.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-32] gi|256651177|dbj|BAI17111.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654168|dbj|BAI20095.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-12] Length = 186 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 113/169 (66%), Gaps = 2/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++ P P+LR+ +R ++ + ++I ++ NM MY GIGLAA Q+G+ R ++ Sbjct: 19 APLQILTPPHPVLRQKARLVKPEDVAEIRKILPNMFSAMYQAPGIGLAAPQVGLSQRFIL 78 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R +P+V INP++I ++D +V +EGCLS+P+ A+V R I VR+ + N Sbjct: 79 VDLGEKDAR-DPIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNVNGD 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K ++ + Sbjct: 138 VVEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAKELKRK 186 >gi|311739504|ref|ZP_07713339.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305320|gb|EFQ81388.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] Length = 170 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L I+ DP+L + I K ++ + L +MLE M G+GLAA Q+G+L R+ V Sbjct: 1 MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDKAGGVGLAANQVGILQRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H +NP + EGCLSIP A+ R + V D + Sbjct: 61 YDCS-HTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GL+A C+QHE DHL+G+LF+ L R + + + Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRLEAPVRKEAMRAIRE 163 >gi|42524171|ref|NP_969551.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100] gi|39576379|emb|CAE80544.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100] Length = 201 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 106/179 (59%), Gaps = 17/179 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ FPDP LR VS+P++ +I L ++M+E MY +GIGLAA Q+G L R+VVI Sbjct: 1 MIMKILTFPDPKLREVSQPVKTFGPEIAKLAEDMVETMYHANGIGLAAPQVGELVRMVVI 60 Query: 62 DLQDHAHR----------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 D + + K P++ INP+I+ + + + EGCLSIP Y V+ Sbjct: 61 DTRPKDEKGRRYKYEEMTELEAAVKQPLILINPEIV-KGEGKTTFDEGCLSIPGYYETVE 119 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R +I ++ D N + I+ DGLLA C+QHE+DHL G LFIDHLS +K + I ++ K Sbjct: 120 RYNYIEMKAFDVNGKEYIVKTDGLLAICMQHEMDHLEGTLFIDHLSFVKGNKIKNQIKK 178 >gi|157363555|ref|YP_001470322.1| peptide deformylase [Thermotoga lettingae TMO] gi|167012066|sp|A8F524|DEF_THELT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157314159|gb|ABV33258.1| peptide deformylase [Thermotoga lettingae TMO] Length = 171 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K + + DP+LR+ S+ +E+++ ++LI ++ E MY+TDGIGLAA QIGV R+ V+ Sbjct: 1 MVKKIRLLGDPVLRKKSKNVERVDETTISLIKDLFETMYATDGIGLAAPQIGVSLRIFVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D P VFINP+II S++ + +EGCLS+P+ DV+RS +TVRYM+ + + Sbjct: 61 D------DGKPRVFINPEIIYKSEEKEIAEEGCLSVPEVFEDVERSKEVTVRYMNEHGEE 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A +QHE DHL G+LFID + +R I KK+ ++V+ Sbjct: 115 VEESFVDYSARVVQHEYDHLQGVLFIDLIPSSRRFAIRKKLIEIVRQ 161 >gi|126209175|ref|YP_001054400.1| peptide deformylase [Actinobacillus pleuropneumoniae L20] gi|165977146|ref|YP_001652739.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|126097967|gb|ABN74795.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877247|gb|ABY70295.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 154 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 65/153 (42%), Positives = 100/153 (65%), Gaps = 3/153 (1%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ ID++ + N +V IN Sbjct: 2 CEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVITIDIE--GDKTNQVVLIN 59 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 P+I+ + + +EGCLSIP +RA V R + V+ ++ + I ADGL A C+QHE Sbjct: 60 PEILESCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGEEVIYEADGLFAICIQHE 118 Query: 138 LDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +DHLNG+LF+DH+S LKR I +KM KL + + Sbjct: 119 IDHLNGVLFVDHISALKRQRIKEKMQKLKKQIE 151 >gi|229514651|ref|ZP_04404112.1| peptide deformylase [Vibrio cholerae TMA 21] gi|229348631|gb|EEO13589.1| peptide deformylase [Vibrio cholerae TMA 21] Length = 168 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y+T +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D +R P+V INPK+++ S+ + QEGCLS+PDY ADV+R + V +D Sbjct: 60 VIDLSD--NRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLCIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|182420425|ref|ZP_02951645.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237667734|ref|ZP_04527718.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375711|gb|EDT73311.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237656082|gb|EEP53638.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 146 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ R +E+I+ ++ LI +MLE MY DG+GLAA Q+G+L RL V Sbjct: 1 MALRNIRKYGDDVLRKECREVEEIDKRLLVLIKDMLETMYDADGVGLAAPQVGILKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D P+VFINP+II S + +EGCLS+P +V R ++ R ++ Q Sbjct: 61 IDIGD-----GPLVFINPEIIETSG-KQIDEEGCLSLPGKMEEVMRPNYVRARALNEKGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A+ LLA + HE DHLNG LFID +++ Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRVNK 146 >gi|254453655|ref|ZP_05067092.1| peptide deformylase [Octadecabacter antarcticus 238] gi|198268061|gb|EDY92331.1| peptide deformylase [Octadecabacter antarcticus 238] Length = 159 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 73/152 (48%), Positives = 102/152 (67%), Gaps = 1/152 (0%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMVFI 76 + P+ ++ + L D+MLE MY GIGLAA Q+G++ R++V+D +D PMV I Sbjct: 2 ADPVATVDKTLHALADDMLETMYDAPGIGLAAPQLGIMQRMLVMDCIKDDMETPQPMVLI 61 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP++I S + ++Y EGCLSIP+ A+V+RSA + V +MD N + Q L ATC+QH Sbjct: 62 NPRVIAASSETNIYDEGCLSIPEQYAEVERSAVVKVEWMDLNGKTQQDEFSDLWATCVQH 121 Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 E+DHLNG LFID+L LKR MIT+KM KL + Sbjct: 122 EIDHLNGKLFIDYLKPLKRQMITRKMQKLKRE 153 >gi|254881558|ref|ZP_05254268.1| peptide deformylase [Bacteroides sp. 4_3_47FAA] gi|254834351|gb|EET14660.1| peptide deformylase [Bacteroides sp. 4_3_47FAA] Length = 184 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + + +INP I+ + +EGCLS+P VKR I V Y+D Sbjct: 61 DLDVMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +FIDHLS L++ MI K+ +++ + Sbjct: 121 EELNEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173 >gi|218259650|ref|ZP_03475313.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii DSM 18315] gi|218224966|gb|EEC97616.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii DSM 18315] Length = 185 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 5/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + + D+ L+ NM E MY+ DG+GLAA Q+G+ RL+VI Sbjct: 1 MILPVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVI 60 Query: 62 DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + INP + S++ +EGCLS+P V RS + V+Y+D Sbjct: 61 DADVMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSVKVRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + +G A +QHE +HL G +FID++S ++R + K++ +++ Sbjct: 121 EDLKEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIKG 172 >gi|320162554|ref|YP_004175779.1| peptide deformylase [Anaerolinea thermophila UNI-1] gi|319996408|dbj|BAJ65179.1| peptide deformylase [Anaerolinea thermophila UNI-1] Length = 171 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDP+LRR ++ + + D+ LID+M+E M + G+GLAA Q+GV R++V Sbjct: 1 MAVRTIVTVPDPVLRRKAKKVTTFDKDLQVLIDDMIETMRAAPGVGLAAPQVGVSQRVIV 60 Query: 61 IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ + K +NP+I+ S + EGCLSIP +V+R I V+ + Sbjct: 61 VEYGEGEEEDENVPKKLYAVVNPEIVEASPERVTGVEGCLSIPRMMGEVERHERIVVKGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + G A QHE+DHL GIL+ D + + Sbjct: 121 NRYGKPVKYKLSGWTARIFQHEIDHLEGILYTDRATSV 158 >gi|170726943|ref|YP_001760969.1| peptide deformylase [Shewanella woodyi ATCC 51908] gi|169812290|gb|ACA86874.1| peptide deformylase [Shewanella woodyi ATCC 51908] Length = 163 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 74/167 (44%), Positives = 102/167 (61%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P+ I S + ID++LE MY TD GIGLAA Q+G + ++ Sbjct: 1 MAVLDILTIPDERLKRKAKPVTDI-SAVQGFIDDLLETMYHTDDGIGLAATQVGSEHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL R P V INP+I+ +F V +EGCLSIP YRA V R+ + V +D Sbjct: 60 VIDLSP--ERDQPQVLINPEIVAAEGEF-VGEEGCLSIPGYRAKVARNEKVKVTALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I D LA LQHE+DHLNG++F DHLS+LK+ + +K+SK Sbjct: 117 TPFEIETDTFLAIVLQHEMDHLNGVVFTDHLSKLKQQIALRKVSKYA 163 >gi|281423116|ref|ZP_06254029.1| peptide deformylase [Prevotella oris F0302] gi|281402452|gb|EFB33283.1| peptide deformylase [Prevotella oris F0302] Length = 187 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V++ I + LI +M E + +++GIGLAA QIG R+VVI Sbjct: 1 MILPIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVI 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL ++ FIN I+ F ++ +EGCLS+P V R I V+Y Sbjct: 61 DLDVLSDDYPEYKGLRKAFINAHILEFDEESPKETMEEGCLSLPGLSEKVTRPTRIHVKY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + DG LA +QHE DHL G +FID + L++ MI K+ +++ + Sbjct: 121 QDEDFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMKGK 175 >gi|332521217|ref|ZP_08397675.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4] gi|332043310|gb|EGI79507.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4] Length = 196 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 95/180 (52%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L+ ++ I+K ++ LI NM E M+ G+GLAA QIG+ R+ ++ Sbjct: 1 MVLPIVAYGDPVLKVKAKEIDKDYPNLKELITNMQETMHGAYGVGLAAPQIGLPIRMFLV 60 Query: 62 DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + FINP I+ S D + EGCLSIPD R DV R Sbjct: 61 DASPFADDDVLEDDERAFLKNFKHTFINPTILEESGDEWAFNEGCLSIPDVREDVFRKPN 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I V Y D + + + GL A QHE DH+ GILF D LS LK+ +I K+ + + + Sbjct: 121 IKVEYFDEDFKKHTMELSGLAARVFQHEYDHIEGILFTDKLSSLKKRLIKGKLLNISKGK 180 >gi|302389590|ref|YP_003825411.1| peptide deformylase [Thermosediminibacter oceani DSM 16646] gi|302200218|gb|ADL07788.1| peptide deformylase [Thermosediminibacter oceani DSM 16646] Length = 155 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ S+ + + + L+ +M E M +G+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRQYGDEVLRKKSKKVTVFDEKLKQLLADMAETMRHANGVGLAAPQVGILKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II+ + EGCLSIP +V R + VR + + Sbjct: 61 IDVGE-----GLIELINPEIISKEGEVVEI-EGCLSIPGITGEVPRPQKVRVRAQNPEGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I + LLA L HE+DHL+GILFID R+ Sbjct: 115 FVEIEGEDLLARALCHEIDHLDGILFIDKAKRI 147 >gi|325963040|ref|YP_004240946.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469127|gb|ADX72812.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] Length = 194 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 76/163 (46%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR V+ P+ + ++ L+ +M E M DG GLAA Q+GV R+ Sbjct: 1 MAILNIRIIGDPVLRTVAEPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + INP + D EGCLSIP V+R V +D N Sbjct: 61 YRIDGVEG-----HIINPVLENSDDFQQDQVEGCLSIPGLGFPVRRYRSTRVTGVDMNGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +GLLA C QHE DHL+GIL+ D L R + + Sbjct: 116 PVTVEGEGLLARCFQHENDHLDGILYTDRLEGEDRKSALRSIR 158 >gi|260655752|ref|ZP_05861221.1| peptide deformylase [Jonquetella anthropi E3_33 E1] gi|260629368|gb|EEX47562.1| peptide deformylase [Jonquetella anthropi E3_33 E1] Length = 162 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 4/157 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + ++PDP+LR+ + P+ + + L+++M +M+ DG+GLAA QIG+ ++ V+ + Sbjct: 7 IRVYPDPVLRQPTEPVTVFDEALRRLLEDMAVIMHEADGVGLAAPQIGIAKKIAVVYDAE 66 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H + INP++I S +EGCLS P VKR +TVR D + Q Sbjct: 67 TDHLYH---LINPEVIASSGG-QTGEEGCLSFPGIFGQVKRPLKVTVRCQDGDGNLQEYT 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 A G +A HE+DHLNG L ID+ S LKR+++ KKM Sbjct: 123 AQGFIARAFTHEIDHLNGRLLIDNFSPLKRNLVLKKM 159 >gi|212691280|ref|ZP_03299408.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855] gi|237712291|ref|ZP_04542772.1| peptide deformylase [Bacteroides sp. 9_1_42FAA] gi|237726430|ref|ZP_04556911.1| peptide deformylase [Bacteroides sp. D4] gi|265751999|ref|ZP_06087792.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA] gi|212666512|gb|EEB27084.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855] gi|229434956|gb|EEO45033.1| peptide deformylase [Bacteroides dorei 5_1_36/D4] gi|229453612|gb|EEO59333.1| peptide deformylase [Bacteroides sp. 9_1_42FAA] gi|263236791|gb|EEZ22261.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA] Length = 184 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + + +INP I+ + +EGCLS+P VKR I V Y+D Sbjct: 61 DLDVMSDELPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + +G LA +QHE DHL+G +FIDHLS L++ MI K+ +++ + Sbjct: 121 EELKEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173 >gi|319788404|ref|YP_004147879.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] gi|317466916|gb|ADV28648.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] Length = 180 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 1/171 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ DP+LR+ S IE I+ + +L+ +MLE M DG GLAAVQIG L R++V Sbjct: 1 MAIRPILPITDPLLRQKSAEIETIDDSVRDLVSDMLETMQDADGAGLAAVQIGELRRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNA 119 D+ + VFINP+II SD+ + EGCLS+P+ V R+ + VR+ D +A Sbjct: 61 ADIPLDEPHASHKVFINPEIIWQSDEIQELEGEGCLSMPEIYFTVPRALEVKVRFTDLDA 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++A+G A C QHE+DHLNGI IDH+S LKRD K K +++ + Sbjct: 121 VTHEVHAEGFSAVCFQHEIDHLNGIRQIDHVSSLKRDKFLAKFRKYLRIDE 171 >gi|332878465|ref|ZP_08446186.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683560|gb|EGJ56436.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 185 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 66/173 (38%), Positives = 100/173 (57%), Gaps = 6/173 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ F P+LR+V+ I ++ LIDNM E + ++GIGLAA QIG+ RLVVI Sbjct: 1 MVLPIYTFGQPVLRKVAEDITPDYPELKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVI 60 Query: 62 DLQD-----HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +L ++ FINP I+ + D + +EGCLS+P V+R I V Y+ Sbjct: 61 NLDLISDDLPEYKGFVHAFINPHILEYDDTETDSMEEGCLSLPGIHEPVRRPTRIRVSYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + Q + +G LA +QHE DHL+G +F+DHLS L++ M+ K+ L++ Sbjct: 121 DEDFQPHDEWVEGYLARVMQHEFDHLDGKMFVDHLSMLRKQMVKGKLGNLLKG 173 >gi|134098682|ref|YP_001104343.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|291003631|ref|ZP_06561604.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|133911305|emb|CAM01418.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] Length = 182 Score = 194 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + + ++ NL+ ++ + M G G+AA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTRAEEVVDFDKELRNLVQDLWDTMEDQGGAGIAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 A +NP ++ EGCLSIP D +R + R + + + Sbjct: 61 YHCDGFAG-----HLVNPTFTAVDEELQFGPEGCLSIPGMSWDCERYRNVVARGWNMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I LLA C+QHE DHL+G+LF+D L R +++ Sbjct: 116 PVEIEGTDLLARCIQHETDHLDGVLFVDRLDEQTRKAAMREIR 158 >gi|257063703|ref|YP_003143375.1| peptide deformylase [Slackia heliotrinireducens DSM 20476] gi|256791356|gb|ACV22026.1| peptide deformylase [Slackia heliotrinireducens DSM 20476] Length = 180 Score = 194 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 86/163 (52%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V +PDP LR V P + + + L M MY+ +G GLAA Q+GV R++VID Sbjct: 7 PVVTYPDPTLREVCVPCDPSDKSLKKLARQMANTMYANNGCGLAAPQVGVNKRIIVIDCD 66 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +NP+ +NP+II + EGCLS P +++R + V+Y D N + II Sbjct: 67 QDSGTRNPITLLNPEIIETRGPEELDGEGCLSCPGITVEIRRPTYAIVKYTDLNGEDWII 126 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DGLL CLQHE+DHLNGI + R K Q Sbjct: 127 EGDGLLGRCLQHEIDHLNGITLFESCDMNARIKALKDYKAAQQ 169 >gi|305664803|ref|YP_003861090.1| peptide deformylase [Maribacter sp. HTCC2170] gi|88707925|gb|EAR00164.1| peptide deformylase [Maribacter sp. HTCC2170] Length = 196 Score = 194 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 102/180 (56%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+V + IEK + LI+NM E MY+ G+GLAA QIG+ RL ++ Sbjct: 1 MVLPIVAYGDPVLRKVGKEIEKNLPKLDELIENMWETMYNASGVGLAAPQIGLPVRLFLV 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A VFIN K+ + + V+ EGCLSIP+ R DV R Sbjct: 61 DATPFAEDDELSEKERKDLDGFKKVFINAKMQEETGEDWVFNEGCLSIPEIREDVTRKDT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D N + Q DG+LA +QHE DH+ GILF D LS LK+ ++ +++ + + + Sbjct: 121 ITITYFDENFKKQTENFDGILARIIQHEYDHIEGILFTDKLSSLKKRLLKGRLANISKGK 180 >gi|302671348|ref|YP_003831308.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316] gi|302395821|gb|ADL34726.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316] Length = 163 Score = 194 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L + + +++I I L+++MLE MY +G+GLAA Q+G+L R+ V Sbjct: 1 MALRTIREIGDDVLVKNCKEVKEITPRIKELVEDMLETMYEANGVGLAAPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++PMVFINP+I+ S + EGCLS+P V R+ ++ + D + Sbjct: 61 IDVTG----EDPMVFINPEILETSGE-QTGYEGCLSVPGKSGIVTRANYVKAKATDLDGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 II + LLA +QHE DHLNG +++D + Sbjct: 116 EFIIEGEELLARAIQHENDHLNGKMYVDKVE 146 >gi|257466485|ref|ZP_05630796.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563] gi|315917642|ref|ZP_07913882.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563] gi|313691517|gb|EFS28352.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563] Length = 173 Score = 194 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+LR+V+ +E IN +I ++ NMLE MY+TDG+GLAA Q+G+ R+ V Sbjct: 1 MIYEIRKYGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMFVC 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + INP I +++ +EGCLS+P V R A I + Y + + Sbjct: 61 DVGTPEESQVKKI-INPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEK 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G A +QHE DHL LF+D +S + + MI KK+ L + Sbjct: 120 IEEILEGFPAIVVQHEYDHLEATLFVDRISPMAKRMIAKKLQALKKE 166 >gi|257452629|ref|ZP_05617928.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R] gi|317059168|ref|ZP_07923653.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R] gi|313684844|gb|EFS21679.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R] Length = 173 Score = 194 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+LR+V+ +E IN +I ++ NMLE MY+TDG+GLAA Q+G+ R+ V Sbjct: 1 MIYEIRKYGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMFVC 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + INP I +++ +EGCLS+P V R A I + Y + + Sbjct: 61 DVGTPEESQVKKI-INPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEK 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G A +QHE DHL LF+D +S + + MI KK+ L + Sbjct: 120 IEEILEGFPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQALKKE 166 >gi|254460696|ref|ZP_05074112.1| peptide deformylase [Rhodobacterales bacterium HTCC2083] gi|206677285|gb|EDZ41772.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083] Length = 166 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 88/166 (53%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L+ +E I +I L+ +M E MY+ G GLAA Q+GV+ RL V Sbjct: 1 MSVLPIITWPDVRLQTECAAVEAIGPEIEQLVGDMFETMYTAPGRGLAASQVGVMRRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D NP+V INP I+ SD S +E CLSI ADV R I + Y N + Sbjct: 61 MDATWKEGDMNPLVCINPSIVPLSDARSTNEEACLSIVGVSADVSRPNEIELSYTGLNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +G A C QHE+DHL+G + DHL +R + K +++ Sbjct: 121 RVTAVIEGFAAVCAQHEMDHLDGRVIFDHLGAPERAALEAKYKEII 166 >gi|302561940|ref|ZP_07314282.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000] gi|302479558|gb|EFL42651.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000] Length = 184 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 77/167 (46%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L R + ++ L+D++ MY G+GLAA Q+G R+ V D Sbjct: 16 VRPLTLLGDPVLHAPCREVTDFGPELARLVDDLFATMYEARGVGLAANQVGEPLRVFVYD 75 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+ + EGCLS+P A +R V + Sbjct: 76 CPDDEDVRHLGHVVNPRPVVTDGVVVRGPEGCLSLPGLEAGTERYDHAVVEGFTVTGEPV 135 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++ G A CLQHE DHL+G ++ D L+ + + ++ + R Sbjct: 136 TVHGTGFFARCLQHECDHLDGRIYADRLTGWRHRRLMRQADRASWNR 182 >gi|75907053|ref|YP_321349.1| peptide deformylase [Anabaena variabilis ATCC 29413] gi|75700778|gb|ABA20454.1| peptide deformylase [Anabaena variabilis ATCC 29413] Length = 187 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 63/143 (44%), Positives = 88/143 (61%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I K++ + LI +ML+ MYS DGIGLAA Q+G+ +L+VID + Sbjct: 22 LGDRVLRQPAKRITKVDDETRQLIRDMLQTMYSNDGIGLAAPQVGINKQLIVIDCEPDNP 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+V INP I S + QEGCLSIP DVKR + V Y D N + Q + A Sbjct: 82 ANPPLVLINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATD 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LL C+QHE+DHLNG++F+D + Sbjct: 142 LLGRCIQHEMDHLNGVVFVDRVD 164 >gi|325662245|ref|ZP_08150860.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] gi|331086046|ref|ZP_08335129.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471497|gb|EGC74718.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] gi|330406969|gb|EGG86474.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 156 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L +V + +EK+ LID+M + MY G+GLAA Q+GVL R+V Sbjct: 1 MAIRKIREMGDDVLTKVCKEVEKVTPRTKVLIDDMFDTMYDAMGVGLAAPQVGVLKRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P++ INP+II S + +EGCLS+P V R ++ VR D + + Sbjct: 61 IDVGE-----GPILLINPEIIETSGE-QTGEEGCLSVPGKSGVVTRPNYVKVRAFDEDMK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 ++ +GLLA HE+DHL+G L+++ + DM ++ Sbjct: 115 EIVLEGEGLLARAFCHEIDHLDGHLYVEKVEGELEDMYYEE 155 >gi|319790017|ref|YP_004151650.1| peptide deformylase [Thermovibrio ammonificans HB-1] gi|317114519|gb|ADU97009.1| peptide deformylase [Thermovibrio ammonificans HB-1] Length = 177 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 65/165 (39%), Positives = 108/165 (65%), Gaps = 3/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + I+PD L+ ++ +E+ N ++++L++ M E MY G+GLAA Q+GVL R++++DL+ Sbjct: 3 DIRIYPDEALKSKAQKVEEFNQELVDLVNGMFETMYKRGGVGLAANQVGVLKRVLILDLK 62 Query: 65 DHAHR--KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 KNP+V +NP+I+ S+ V +EGCLS+P VKR+ ++ V+ + + + Sbjct: 63 AGTEEQGKNPIVLVNPEIVA-SEGEVVKEEGCLSLPGLYRKVKRAQWVKVKAQNLDGEEI 121 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I +GLLA LQHE+DHLNG++FID LS L++ + +K KL + Sbjct: 122 EIEGEGLLARALQHEIDHLNGVVFIDRLSPLQKRLALEKFKKLKR 166 >gi|323496228|ref|ZP_08101286.1| peptide deformylase [Vibrio sinaloensis DSM 21326] gi|323318505|gb|EGA71458.1| peptide deformylase [Vibrio sinaloensis DSM 21326] Length = 167 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 107/170 (62%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + +E +S I LID+ML+ +Y T +GIGLA+ Q+G +V Sbjct: 1 MTVLKILTAPDPKLKTQAHKVEDFSS-IQTLIDDMLDTLYDTDNGIGLASTQVGRSEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL D +R P++ +NP++++ S ++ QEGCLS+PDY A+V+R + V D + Sbjct: 60 IIDLSD--NRDEPLILVNPEVVSGSH-KALGQEGCLSVPDYYAEVERYTSVVVSAQDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +D LA +QHE+DHL G LFID+LS LKR M KK+ K ++ R Sbjct: 117 NSITIESDDFLAIVMQHEIDHLAGNLFIDYLSPLKRQMAMKKVKKHLKSR 166 >gi|326329763|ref|ZP_08196084.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] gi|325952528|gb|EGD44547.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] Length = 181 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR+ + + + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAVQPIRLFGDPVLRKPAIEVVDFDKELHKLVADLTDTMLEAPGAGLAAPQIGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP + T S++ EGCLS+PD D +R+ + + D + + Sbjct: 61 WYVDGQVG-----HLVNPDL-TLSEETQDGGEGCLSLPDITFDCRRALSVVAKGFDMHGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I LLA +QHE DHL+GILFID L R K++ + Sbjct: 115 PVTIEGSELLARAIQHETDHLDGILFIDRLDEAARKAAMKEIRE 158 >gi|229526222|ref|ZP_04415626.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] gi|254286639|ref|ZP_04961594.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|150423223|gb|EDN15169.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|229336380|gb|EEO01398.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] Length = 168 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y+T +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D +R P+V INPK+++ ++ + QEGCLS+PDY ADV+R + V +D Sbjct: 60 VIDLSD--NRDQPLVLINPKVVS-GNNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|15617090|ref|NP_240303.1| polypeptide deformylase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681842|ref|YP_002468228.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682397|ref|YP_002468781.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471547|ref|ZP_05635546.1| peptide deformylase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11131992|sp|P57563|DEF_BUCAI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767572|sp|B8D9R9|DEF_BUCA5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767573|sp|B8D821|DEF_BUCAT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|25303709|pir||E84987 formylmethionine deformylase (EC 3.5.1.31) [imported] - Buchnera sp. (strain APS) gi|10039155|dbj|BAB13189.1| polypeptide deformylase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622130|gb|ACL30286.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624685|gb|ACL30840.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 173 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 111/167 (66%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+++IN I + ++M++ MY +GIGLAA Q+ + +++V Sbjct: 1 MSLLKILYYPDIRLRILAKPVKEINKKIQKIANDMIDTMYQEEGIGLAATQVNIPLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +KN +V INPKII D S+ +EGCLSIP+Y+A + RS +I V+ ++ + + Sbjct: 61 VNT--MEQKKNNLVLINPKIIKKEGDISI-EEGCLSIPEYQASIPRSNYIQVQAVNLDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A +L+ C+QHE+DHL G LFID+LS+ KR+ I KK K+ + Sbjct: 118 KIEIEAKSILSICIQHEIDHLKGKLFIDYLSKFKRERIQKKFEKINK 164 >gi|15894999|ref|NP_348348.1| peptide deformylase [Clostridium acetobutylicum ATCC 824] gi|3023622|sp|O05100|DEF1_CLOAB RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|15024688|gb|AAK79688.1|AE007681_9 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC 824] gi|1905954|gb|AAB50347.1| deformylase [Clostridium acetobutylicum ATCC 824] gi|325509136|gb|ADZ20772.1| peptide deformylase [Clostridium acetobutylicum EA 2018] Length = 150 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 98/150 (65%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR +EKI+ ++ LID+M E MY+ DG+GLAA Q+G+L RLVV Sbjct: 1 MAIRSIRKYGDELLRKKSRKVEKIDKRLLTLIDDMFETMYNADGVGLAAPQVGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S +V EGCLSIP+ + +V+R ++ + ++ + Sbjct: 61 IDVGE-----GPVVLINPEILETSG-KAVDVEGCLSIPERQGEVERPTYVKAKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 +I A+ L A + HE DHLNG+LF+D L Sbjct: 115 EIVIEAEDLFARAICHETDHLNGVLFVDKL 144 >gi|224369791|ref|YP_002603955.1| Def [Desulfobacterium autotrophicum HRM2] gi|259645178|sp|C0QI55|DEF_DESAH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|223692508|gb|ACN15791.1| Def [Desulfobacterium autotrophicum HRM2] Length = 174 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 96/169 (56%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +P +L + + +E I+ ++ L+++M E M+ G+GLAA Q+G R++V Sbjct: 1 MALLEIYQYPAAVLLKKALQVETIDDTVIKLVNDMGETMFEAPGVGLAAPQVGQSRRIIV 60 Query: 61 IDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + Q + K INP+II S E CLS+PDY +VKR +TVR + Sbjct: 61 YNPQAGSSNANEDTKEFKALINPEIIASSGSIVSENEACLSVPDYSCNVKRFETVTVRGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A GLLA +QHE+DHL+GIL+ID +S LKR+M KK+ K Sbjct: 121 NLEGKKLEFDAQGLLAVIMQHEIDHLDGILYIDRISTLKRNMYKKKVRK 169 >gi|239944168|ref|ZP_04696105.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|239990624|ref|ZP_04711288.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 11379] gi|291447640|ref|ZP_06587030.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291350587|gb|EFE77491.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] Length = 212 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECKDVTAFDDELAQLIDDMFASQKTAEGVGLAANQIGVDLKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118 D D +++ V NP + + + V EGCLS+P A + R + VR D Sbjct: 96 DCPDDDGKRHTGVVCNPVLEELAPEMRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAK 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M + Sbjct: 156 GNPIRVKGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201 >gi|58040267|ref|YP_192231.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans 621H] gi|58002681|gb|AAW61575.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans 621H] Length = 184 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 73/166 (43%), Positives = 107/166 (64%), Gaps = 1/166 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++I P P+LR V+R + + I + M MY GIGLAA Q+G+ R ++D+ Sbjct: 17 PILIAPQPVLREVTRDVRPEDIAFIREQLPGMFSAMYKAPGIGLAAPQVGLGMRFALVDV 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + PM+ INP+II+ SD + +EGCLS+P+ A+V R I VRY + + Sbjct: 77 AEEDAPREPMLLINPEIISDSDQLAAREEGCLSLPNQYAEVVRPESIRVRYRNLAGETIE 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A GLLATC+QHE+DHL+GILF+DHLS LKR+MI ++++K +LR Sbjct: 137 RDASGLLATCIQHEMDHLDGILFVDHLSTLKRNMIMRRLAKEQKLR 182 >gi|150007311|ref|YP_001302054.1| peptide deformylase [Parabacteroides distasonis ATCC 8503] gi|255014064|ref|ZP_05286190.1| peptide deformylase [Bacteroides sp. 2_1_7] gi|256839600|ref|ZP_05545109.1| polypeptide deformylase [Parabacteroides sp. D13] gi|262382116|ref|ZP_06075254.1| polypeptide deformylase [Bacteroides sp. 2_1_33B] gi|298375297|ref|ZP_06985254.1| peptide deformylase [Bacteroides sp. 3_1_19] gi|301310689|ref|ZP_07216628.1| peptide deformylase [Bacteroides sp. 20_3] gi|158513748|sp|A6L9R8|DEF_PARD8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149935735|gb|ABR42432.1| polypeptide deformylase [Parabacteroides distasonis ATCC 8503] gi|256738530|gb|EEU51855.1| polypeptide deformylase [Parabacteroides sp. D13] gi|262297293|gb|EEY85223.1| polypeptide deformylase [Bacteroides sp. 2_1_33B] gi|298267797|gb|EFI09453.1| peptide deformylase [Bacteroides sp. 3_1_19] gi|300832263|gb|EFK62894.1| peptide deformylase [Bacteroides sp. 20_3] Length = 185 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 5/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + + K D+ L+ NM E MY+ DG+GLAA Q+G+ RLVVI Sbjct: 1 MILPVFLYGQPVLRKEAEDVPKDYPDLKQLVANMFETMYNADGVGLAAPQVGLSIRLVVI 60 Query: 62 DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + INP+ + S++ +EGCLS+P V RS + VRY D Sbjct: 61 DGDVMGDDFPECKGFKRALINPEFLERSEEEIAMEEGCLSLPGIHEKVSRSKTVRVRYWD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 N + +G A +QHE +HL G +FID++S ++R + K++ +++ Sbjct: 121 ENWEEHEEVVEGFAARIVQHECEHLTGHVFIDNVSAIRRQLNKGKLNSIIKG 172 >gi|298529648|ref|ZP_07017051.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1] gi|298511084|gb|EFI34987.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1] Length = 169 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +PD IL + +RP+EKI+ I++L +M +MY GIGLAA Q+G R+V + Sbjct: 1 MSRKIHTYPDKILTQKARPVEKIDDYIIDLSRDMARLMYEHRGIGLAAPQVGESLRVVTV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL ++++ +INP+II S+D + +EGCLS+ Y+ V R+ + VR ++ + Sbjct: 61 DLSGPDNQEDLFTYINPEIIA-SEDETTTEEGCLSVAGYQTRVCRARKVKVRALNLQGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + L A CLQHE+DHLNGILFIDH+SRLKR M KK+ K ++ + Sbjct: 120 VIHEGEDLWAVCLQHEIDHLNGILFIDHISRLKRAMYDKKVKKWLENK 167 >gi|326402652|ref|YP_004282733.1| peptide deformylase [Acidiphilium multivorum AIU301] gi|325049513|dbj|BAJ79851.1| peptide deformylase [Acidiphilium multivorum AIU301] Length = 185 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 75/166 (45%), Positives = 108/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++I PD LR +R + + D+ L+ M MY GIGLAA QIGV RLVV+DL Sbjct: 14 EILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDL 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 ++ PMV INP+I S++ +EGCLS+P A+V R I+V + D + + + Sbjct: 74 APDDQKQ-PMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRT 132 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K ++ + Sbjct: 133 IDADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAKDLREK 178 >gi|183598657|ref|ZP_02960150.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827] gi|188020843|gb|EDU58883.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827] Length = 167 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 111/170 (65%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + ++ PD LR P+ I + LID++L+ MYST +GIGLAA QIG ++ Sbjct: 1 MAVRAIIEIPDERLRVKCDPVTDIAAA-QPLIDDLLDTMYSTDNGIGLAATQIGATLSVM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + +R PMVF+NP+II S+ + YQEGCLS+P+ ADV R + V+ +D + Sbjct: 60 VIDISE--NRDQPMVFVNPEIIE-SEGETSYQEGCLSVPEIYADVARFKRVKVKALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I +D LA +QHE+DHL+G +F+DHLS LKR+M+ KK+ K +LR Sbjct: 117 KAFITDSDEFLAIVMQHEIDHLHGKVFLDHLSTLKRNMLLKKLKKQQRLR 166 >gi|188995931|ref|YP_001930183.1| peptide deformylase [Porphyromonas gingivalis ATCC 33277] gi|238689275|sp|B2RMJ1|DEF_PORG3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188595611|dbj|BAG34586.1| putative peptide deformylase [Porphyromonas gingivalis ATCC 33277] Length = 189 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I + LI NM E MY +DGIGLAA QIG+ R++VI Sbjct: 1 MLLPIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVI 60 Query: 62 DLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D V IN I +D EGCLS+P V+R I +RY+D Sbjct: 61 DADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q G A +QHE DH++G LFIDH+S +++ +I K+ +++ + Sbjct: 121 EDFQPHEEVLHGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGK 173 >gi|172040657|ref|YP_001800371.1| peptide deformylase [Corynebacterium urealyticum DSM 7109] gi|171851961|emb|CAQ04937.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109] Length = 166 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 8/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M L F DP+LR + +E ++ + L+ +MLE M G+GLAA Q+GV R Sbjct: 1 MAVLSLRYFGDPVLRTPAAEVEADFSSDAALATLVADMLETMDHHGGVGLAANQVGVTKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + V D + INP + ++ EGCLSIP R +V+R+ + +R Sbjct: 61 VFVYDCESDRG-----HVINPTWESVGEETQTGPEGCLSIPGIRGEVQRAETVRLRGQTL 115 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + GLLA C+QHE DHL+G+LF+ HLS R + + Sbjct: 116 DGELVDMEVSGLLARCVQHETDHLDGVLFLKHLSPEDRKQAMADIRR 162 >gi|261344111|ref|ZP_05971755.1| peptide deformylase [Providencia rustigianii DSM 4541] gi|282567702|gb|EFB73237.1| peptide deformylase [Providencia rustigianii DSM 4541] Length = 168 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 100/158 (63%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + ++ PD LR P+ + + LID+++E MYSTD GIGLAA QI ++ Sbjct: 1 MAVREIIEIPDERLRIKCAPVTDF-AAVQTLIDDLIETMYSTDTGIGLAAPQIAETKAIM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + R PMVFINP+II S+ + YQEGCLS+PD ADV R + V+ D + Sbjct: 60 VIDISE--ERNQPMVFINPEIIE-SEGETSYQEGCLSVPDVYADVPRFQRVKVKAFDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 I+ +D LA +QHE+DHLNG +FIDHLS LKR+M Sbjct: 117 NEFIVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154 >gi|148285009|ref|YP_001249099.1| peptide deformylase [Orientia tsutsugamushi str. Boryong] gi|158514262|sp|A5CF65|DEF_ORITB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146740448|emb|CAM80944.1| polypeptide deformylase [Orientia tsutsugamushi str. Boryong] Length = 181 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 69/174 (39%), Positives = 100/174 (57%), Gaps = 9/174 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M LV PDPIL++VS P++ +N I LID+MLE MY G+GLAA Q+ V R++V Sbjct: 1 MSILSLVTAPDPILKKVSSPVDTVNDSIRQLIDDMLETMYHNHGVGLAAPQVAVSKRIIV 60 Query: 61 IDLQDHA---------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +DL K P+ +NP + S+ +EGCLS+P +V R I Sbjct: 61 LDLSKVDIEEDNITNSEYKYPLFMVNPIVKAISNQTVTAKEGCLSLPKQAIEVSRYHEIQ 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 V Y+D + + + A G LA +QHE+DHL+GIL +D+LS LK++ +SK+ Sbjct: 121 VTYLDYYNKLKTLNAAGWLARAIQHEVDHLDGILLVDYLSNLKKEATLNTLSKI 174 >gi|269468439|gb|EEZ80104.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster bacterium] Length = 185 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 70/185 (37%), Positives = 110/185 (59%), Gaps = 20/185 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ +PDP LR ++ ++ +N L+ NM E MY+ DGIGLAA QI ++VV+ Sbjct: 1 MILPILHYPDPRLRTKAKEVDAVNDKTRILVKNMFETMYAEDGIGLAATQINQHLQIVVM 60 Query: 62 DLQDHAH-------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 D+ D + +P+ FINPKI T S + EGCLS+P ++A Sbjct: 61 DVPDSQDDYELLLKNRKNDSDKETNIQHHPLCFINPKITTISG-HEKHIEGCLSVPGFQA 119 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +V+RS IT+ ++ + ++A LLA C+QHELDHL GILF+D+LS+LK+ + +K Sbjct: 120 EVERSNQITIEALNEQGESFTLHASNLLAVCIQHELDHLKGILFVDYLSKLKQKRLLEKT 179 Query: 163 SKLVQ 167 K+++ Sbjct: 180 KKVIK 184 >gi|189347171|ref|YP_001943700.1| peptide deformylase [Chlorobium limicola DSM 245] gi|238692163|sp|B3EE19|DEF_CHLL2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189341318|gb|ACD90721.1| peptide deformylase [Chlorobium limicola DSM 245] Length = 185 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ D +LR+ + P+E ++ ++ L+ NM E MYS GIGLAA Q+G RL+V+ Sbjct: 1 MIVPINIYSDDVLRQQALPLEGVDKEVEELLGNMFETMYSAPGIGLAAPQVGRSLRLLVL 60 Query: 62 DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D+ N PMV INP+I+ + +EGCLS+P + DV R + I++ Y D + Sbjct: 61 DISCMREYANVKPMVVINPEIVAVKG-YRSMEEGCLSLPGLQGDVVRPSSISLNYRDEHF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q GLLA LQHE+DHL+G LF+D L + +R + K++ L R Sbjct: 120 EGQNAEFSGLLARVLQHEIDHLDGRLFVDRLQKKERRKVQKELDALASGR 169 >gi|148259426|ref|YP_001233553.1| peptide deformylase [Acidiphilium cryptum JF-5] gi|146401107|gb|ABQ29634.1| peptide deformylase [Acidiphilium cryptum JF-5] Length = 188 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 75/166 (45%), Positives = 108/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++I PD LR +R + + D+ L+ M MY GIGLAA QIGV RLVV+DL Sbjct: 17 EILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDL 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 ++ PMV INP+I S++ +EGCLS+P A+V R I+V + D + + + Sbjct: 77 APDDQKQ-PMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRT 135 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K ++ + Sbjct: 136 IDADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAKDLREK 181 >gi|150006541|ref|YP_001301285.1| peptide deformylase [Bacteroides vulgatus ATCC 8482] gi|294778840|ref|ZP_06744257.1| peptide deformylase [Bacteroides vulgatus PC510] gi|319642942|ref|ZP_07997578.1| peptide deformylase [Bacteroides sp. 3_1_40A] gi|158513745|sp|A6L7J9|DEF_BACV8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149934965|gb|ABR41663.1| peptide deformylase [Bacteroides vulgatus ATCC 8482] gi|294447293|gb|EFG15876.1| peptide deformylase [Bacteroides vulgatus PC510] gi|317385490|gb|EFV66433.1| peptide deformylase [Bacteroides sp. 3_1_40A] Length = 184 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + + +INP I+ + +EGCLS+P VKR I V Y+D Sbjct: 61 DLDVMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHEAVKRPDRIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + +G LA +QHE DHL+G +FIDHLS L++ MI K+ +++ + Sbjct: 121 EELKEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173 >gi|303237149|ref|ZP_07323719.1| peptide deformylase [Prevotella disiens FB035-09AN] gi|302482536|gb|EFL45561.1| peptide deformylase [Prevotella disiens FB035-09AN] Length = 187 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 93/174 (53%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ P+LR+V+ I ++ LI +M E ++DGIGLAA QIG RLVVI Sbjct: 1 MILPIYTLGQPVLRKVAEDIPLDYPNLQQLIADMFETCSASDGIGLAAPQIGKSIRLVVI 60 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL ++ FIN I+ D + +EGCLS+P +V R I V+Y+ Sbjct: 61 DLDVISESFPEYKDFKHAFINGHILETDDSETETMEEGCLSLPGIHENVTRPKRIHVKYV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + + DG LA +QHE DH+ G +F D +S ++ +I KKM L Q R Sbjct: 121 DENLEEHDEWIDGYLARVIQHEFDHIEGKVFTDRISPFRKQIIAKKMKALSQGR 174 >gi|28900639|ref|NP_800294.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|260365515|ref|ZP_05778052.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|260877578|ref|ZP_05889933.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|260895409|ref|ZP_05903905.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|260901682|ref|ZP_05910077.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|31076642|sp|Q87I22|DEF2_VIBPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|28809019|dbj|BAC62127.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|308085281|gb|EFO34976.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|308090907|gb|EFO40602.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|308108907|gb|EFO46447.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|308114324|gb|EFO51864.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|328470579|gb|EGF41490.1| peptide deformylase [Vibrio parahaemolyticus 10329] Length = 168 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 111/170 (65%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + +++ I LID+MLE +Y+T +GIGLA+ Q+G +V Sbjct: 1 MAVLEILSIPDPRLKVKAEKVTDVST-IQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D R +P++ +NP++++ ++ ++ QEGCLS+P+Y ADV+R + V +D + Sbjct: 60 VIDISD--ERNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +D LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 117 NPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166 >gi|220931832|ref|YP_002508740.1| peptide deformylase [Halothermothrix orenii H 168] gi|254767591|sp|B8CWS6|DEF_HALOH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219993142|gb|ACL69745.1| peptide deformylase [Halothermothrix orenii H 168] Length = 154 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR ++P+ +I ++LIDNM+E MY +G+GLAA Q+GV R++V Sbjct: 1 MPVLQIRKIGDPVLRSKAKPVTEITKKTLSLIDNMVETMYQAEGVGLAAPQVGVSKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + INP+II + + +EGCLS+P V R++ +TV+ ++ + Sbjct: 61 VD---TGEGQGLIELINPEIIET-EGKDIMEEGCLSVPGQTGKVIRASKVTVKGLNRGGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A+G LA QHE+DHLNGILFID + R+ +MI Sbjct: 117 EVRIRAEGFLARAFQHEIDHLNGILFIDKVVRIGEEMI 154 >gi|299136398|ref|ZP_07029581.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] gi|298600913|gb|EFI57068.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] Length = 185 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 104/168 (61%), Gaps = 1/168 (0%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V +PDP+L + + + ++ L+D M E MY+ GIGLAA QIG+ ++ VID Sbjct: 18 IHEVVKYPDPVLSKPGEKVTEFTPELAQLVDEMFESMYAAQGIGLAAPQIGISKQITVID 77 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + ++ + INP+II + V +EGCLS+P+ R V R+A + VR + + Sbjct: 78 VSFKERPEDKLALINPEIIER-EGKQVEEEGCLSLPEIREKVSRAARVKVRAQNVKGEFF 136 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + LLA LQHE+DHL+GILFI+HLSRLKRD++ +++ KL + + Sbjct: 137 EVEGEELLARALQHEIDHLHGILFIEHLSRLKRDLVHRRIRKLQKNGE 184 >gi|34541765|ref|NP_906244.1| peptide deformylase [Porphyromonas gingivalis W83] gi|39930820|sp|Q7MT07|DEF_PORGI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|34398083|gb|AAQ67143.1| polypeptide deformylase [Porphyromonas gingivalis W83] Length = 189 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I + LI NM E MY +DGIGLAA QIG+ R++VI Sbjct: 1 MLLPIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVI 60 Query: 62 DLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D V IN I +D EGCLS+P V+R I +RY+D Sbjct: 61 DADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q G A +QHE DH++G LFIDH+S +++ +I K+ +++ + Sbjct: 121 EDFQPHEEVLQGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGK 173 >gi|213855562|ref|ZP_03383802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 148 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 66/151 (43%), Positives = 104/151 (68%), Gaps = 3/151 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ADGLLA C+QHE+DHL G LFID+LS Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLS 148 >gi|218778408|ref|YP_002429726.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01] gi|254767578|sp|B8FHH0|DEF_DESAA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|218759792|gb|ACL02258.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01] Length = 172 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 70/171 (40%), Positives = 106/171 (61%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P PIL + + IE I+ D++ L+++M E +Y G+GLAAVQ+GV ++V Sbjct: 1 MALLDIVTYPAPILGKPCKLIEDIDEDLVCLVEDMTETLYDAPGLGLAAVQVGVDKAMLV 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D+ +++ V INPKI+ + EGCLS+P++RADV R A +TV +D Sbjct: 61 YDVAEDENSESTGLKVLINPKIVHTEGKVTSENEGCLSVPEFRADVPRFACVTVEGVDHE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I A+GLLA LQHE+DHL G LFID +S LKR M ++++K ++ Sbjct: 121 GKPVKIDAEGLLAIVLQHEIDHLEGKLFIDRISSLKRSMYKRRVAKALKAE 171 >gi|308177754|ref|YP_003917160.1| peptide deformylase [Arthrobacter arilaitensis Re117] gi|307745217|emb|CBT76189.1| peptide deformylase [Arthrobacter arilaitensis Re117] Length = 187 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR ++ + ++ L+++M + M + G GLAA Q+GV R+ Sbjct: 1 MAILGIRIIGDPVLRTPAQEVTDFGPELQKLVEDMDQTMENVTGAGLAAPQVGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNA 119 + +NP + S+D+ Q EGCLSIP A V+R + D Sbjct: 61 YQTG-----QERGHIVNPVL-ELSEDYQEDQVEGCLSIPGIAAPVRRRRHVKATGFDKFG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I DGLLA C QHE DHL+GILF+D L ++ + + Sbjct: 115 NPVEIEGDGLLARCFQHETDHLDGILFLDRLEPEEKKAAWRTLRA 159 >gi|163815237|ref|ZP_02206614.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759] gi|158449432|gb|EDP26427.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759] Length = 155 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 87/148 (58%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ RP+ K++ + LID+M + MY +G+GLAA Q+G+L R+VV Sbjct: 1 MAIRNIRLDGDDILRKTCRPVTKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D NP+ INP+II + +EGCLS+P V R + + D N + Sbjct: 61 IDVCD----DNPLCLINPEIIEADGE-QTGEEGCLSLPGKFGTVTRPMHVVCKAYDENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA + HELDHL+G L+ D Sbjct: 116 EFTVEGEGLLARAICHELDHLDGKLYKD 143 >gi|224060121|ref|XP_002300047.1| peptide deformylase [Populus trichocarpa] gi|222847305|gb|EEE84852.1| peptide deformylase [Populus trichocarpa] Length = 258 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 91/166 (54%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V +PDPILR ++ I+ + ++ L+D M +VMY TDGIGL+A Q+G+ +L+V Sbjct: 65 APLKIVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF 124 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + D + +V +NP++ +S ++ EGCLS P ADVKR + + D N Sbjct: 125 NPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKIDARDINGAR 184 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GL A QHE DHL GILF D ++ D I + L + Sbjct: 185 FTVNLSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQALEK 230 >gi|299140626|ref|ZP_07033764.1| peptide deformylase [Prevotella oris C735] gi|298577592|gb|EFI49460.1| peptide deformylase [Prevotella oris C735] Length = 187 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V++ I + LI +M E + +++GIGLAA QIG R+VVI Sbjct: 1 MILPIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVI 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL ++ FIN I+ F +D +EGCLS+P V R I V+Y Sbjct: 61 DLDVLSDDYPEYKGLRKAFINAHILEFDEDSPKETIEEGCLSLPGLSEKVTRPTRIHVKY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + DG LA +QHE DHL G +FID + L++ MI K+ +++ + Sbjct: 121 QDEDFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMKGK 175 >gi|218132889|ref|ZP_03461693.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC 43243] gi|217991762|gb|EEC57766.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC 43243] Length = 159 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 9/154 (5%) Query: 1 MVKKPLVIFP---DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + + + D ILR+ ++ + ++ I LID+M + MY +G GLAA Q+G+ R Sbjct: 1 MALRNIRVLGQDGDEILRKTAKEVTEMTPKIRELIDDMFDTMYEANGCGLAAPQVGIRKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VVID D +P+V INP I+ S + EGCLS+P V R + V+ D Sbjct: 61 IVVIDCGD-----DPIVLINPVILETSGE-QTGSEGCLSVPGKCGTVTRPNYAKVKAFDE 114 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ + LLA CL HE+DHL+GI+++D + Sbjct: 115 DMNEYIVEGEELLARCLCHEIDHLDGIMYVDKVE 148 >gi|325963678|ref|YP_004241584.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469765|gb|ADX73450.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] Length = 190 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA Q+GV R+ V Sbjct: 1 MTVLPITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKII--TFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + V +NP + S D +EGCLS P + +KR+ + V Sbjct: 61 YKYANDDGAPPAGVLVNPVLTLSKISGAVPDPDEEEEGCLSFPSGQYPLKRAEWARVEGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D Q A G A +QHE DHL+G L+++ L K+ K Sbjct: 121 DGYGQPVRFEATGWFARVMQHEYDHLDGKLYVNRLMDRYARKAMKQAKK 169 >gi|310659160|ref|YP_003936881.1| defa [Clostridium sticklandii DSM 519] gi|308825938|emb|CBH21976.1| DefA [Clostridium sticklandii] Length = 152 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ SR ++KIN I+ L+++M++ MY DG+GLAA Q+GVL R+VV Sbjct: 1 MAIRIIRTDGDEVLRKKSRAVDKINDKILELVEDMIDTMYEADGVGLAAPQVGVLKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D P+V INP+I+ S + EGCLS+P V R ++ + D + Sbjct: 61 IDVGD-----GPIVMINPEILESSGE-QTDDEGCLSLPGKFGCVTRPYYVKAKAYDTDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ A+ L A + HE+DHL+GILF D + Sbjct: 115 EFVVEAEELFARAICHEIDHLDGILFKDKVE 145 >gi|170781968|ref|YP_001710300.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] gi|169156536|emb|CAQ01687.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] Length = 188 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +R ++ + D+ +L+ +M E M G+GLAA Q+GV R+ V Sbjct: 1 MAVLPIRITGDPVLHAPARDVQAFDDDLRSLVADMYETMDEAPGVGLAAPQVGVPLRVFV 60 Query: 61 IDLQDHAHRK------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + NP +FI P + +D+ +EGCLS P R + R+ +R Sbjct: 61 YSYETDDGEPLRGVAVNPDLFITPVAVREADE-DTEEEGCLSFPGERFPLVRADRAILRA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D + + I A G A LQHE DHL+G+L+ D L+ R + K + K Sbjct: 120 VDLDGRPYEIEAAGWFARILQHEYDHLDGLLYTDRLAHEHRKPVAKVIRK 169 >gi|83273759|ref|XP_729539.1| polypeptide deformylase [Plasmodium yoelii yoelii str. 17XNL] gi|23487628|gb|EAA21104.1| polypeptide deformylase, putative [Plasmodium yoelii yoelii] Length = 236 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 97/164 (59%), Gaps = 1/164 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +VI+P+ ILR+ S + + ++ NLI M + MY GIGL+A Q+ + R++V + L Sbjct: 62 IVIYPNSILRQKSEEVIYFDDNLKNLIRRMFKAMYENKGIGLSAPQVNISKRIIVWNALY 121 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + KN VFINP I+ S + EGCLS P+ A V+R A +++ Y D N + Sbjct: 122 EKRDEKNERVFINPLIVQESAVKNKLIEGCLSFPNIEAKVERPAIVSISYYDINGNKHLK 181 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 G+ A QHE DHLNG+LFID +++ ++ I K+++LV+ Sbjct: 182 ILKGIHARVFQHEYDHLNGVLFIDRITQTEKQKIKGKLNELVRE 225 >gi|17230571|ref|NP_487119.1| peptide deformylase [Nostoc sp. PCC 7120] gi|23396564|sp|Q8YSK6|DEF1_ANASP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|17132173|dbj|BAB74778.1| polypeptide deformylase [Nostoc sp. PCC 7120] Length = 187 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 62/143 (43%), Positives = 89/143 (62%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I K++ + LI +ML+ MYS+DGIGLAA Q+G+ +L+VID + Sbjct: 22 LGDRVLRQPAKRITKVDDETRQLIRDMLQTMYSSDGIGLAAPQVGINKQLIVIDCEPDNP 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P++ INP I S + QEGCLSIP DVKR + V Y D N + Q + A Sbjct: 82 ANPPLILINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATD 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LL C+QHE+DHLNG++F+D + Sbjct: 142 LLGRCIQHEMDHLNGVVFVDRVD 164 >gi|269968185|ref|ZP_06182216.1| peptide deformylase [Vibrio alginolyticus 40B] gi|269827183|gb|EEZ81486.1| peptide deformylase [Vibrio alginolyticus 40B] Length = 168 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 111/170 (65%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + +++ + LID+MLE +Y+T +GIGLA+ Q+G +V Sbjct: 1 MAVLEILSIPDPRLKVKAEKVTDVST-VQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D R +P++ +NP++++ ++ ++ QEGCLS+P+Y ADV+R + V +D + Sbjct: 60 VIDISD--ERNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +D LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 117 NPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKSQ 166 >gi|295134935|ref|YP_003585611.1| peptide deformylase [Zunongwangia profunda SM-A87] gi|294982950|gb|ADF53415.1| peptide deformylase [Zunongwangia profunda SM-A87] Length = 196 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L++ ++PI+K + LI NM + MY+ G+GLAA Q+GV RL VI Sbjct: 1 MILPIVAYGDPVLKKKAKPIDKDYPKLEELISNMWDTMYNAYGVGLAAPQVGVPIRLFVI 60 Query: 62 DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + VFIN K+I + D + EGCLSIPD R D+ R Sbjct: 61 DAAPFAEDDDLTAEEKEYLKGFKRVFINAKVIEETGDEWAFSEGCLSIPDVREDIFRKPE 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +T+ Y D N + + GL A +QHE DH GILF + +S LK+ +I ++ K+ + Sbjct: 121 VTIEYQDQNFETKKETFTGLAARVVQHEYDHTEGILFTEKISSLKKRLINGRLKKISSGK 180 >gi|304382925|ref|ZP_07365407.1| peptide deformylase [Prevotella marshii DSM 16973] gi|304335950|gb|EFM02198.1| peptide deformylase [Prevotella marshii DSM 16973] Length = 186 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 98/175 (56%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V++ I D+ LI NM E M S+DGIGLAA QIG R+VVI Sbjct: 1 MILPIYVYGQPVLRKVAQDISSDYPDLQELIANMFETMDSSDGIGLAAPQIGKSIRVVVI 60 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL ++ +INP I+ + + + +EGCLSIP V R + I V Y Sbjct: 61 DLNVLSDDFPEYKDFRKAYINPHILEIDETSEKRLMEEGCLSIPGLHEKVPRFSRIHVTY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +D + +G LA +QHE DHL G +F+DH+S L++ +I K+ L Q R Sbjct: 121 LDEAFVSHDEWVEGYLARVMQHEFDHLEGKMFVDHISPLRKQLIKNKLKALTQGR 175 >gi|269123156|ref|YP_003305733.1| peptide deformylase [Streptobacillus moniliformis DSM 12112] gi|268314482|gb|ACZ00856.1| peptide deformylase [Streptobacillus moniliformis DSM 12112] Length = 169 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 100/167 (59%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+K + ++ PILR+ S + + N ++ N +D M++ M +GIGLAA Q+G+ R V Sbjct: 1 MIKLNIYVYEAPILRKKSEEVVEFNDELRNTLDEMVKTMRLANGIGLAANQVGIGKRFFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ D + +NP+I++F ++ +QEGCLSIP +V R I VRY D N Sbjct: 61 LEIDDEITK-----VVNPEILSFGEEMVEFQEGCLSIPGIFKNVLRPESIVVRYQDENGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +GL + QHELDH++GILFID +S + R++I KK+ + + Sbjct: 116 FVERELNGLKSRAFQHELDHIDGILFIDKISPMSRNLIRKKLEVMKK 162 >gi|260591629|ref|ZP_05857087.1| peptide deformylase [Prevotella veroralis F0319] gi|260536429|gb|EEX19046.1| peptide deformylase [Prevotella veroralis F0319] Length = 186 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVI Sbjct: 1 MVLPVYTYGQPVLRKVAEDIPLDYPDLQQLIQNMFETNTASDGVGLAAPQIGKSIRVVVI 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL ++ FIN I+ F D + +EGCLS+P V R+ I V+Y+ Sbjct: 61 DLDVLSDTFPEYKGFRHAFINGHILEFDDSETETLEEGCLSLPGIHESVTRAKRIYVKYV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + +G LA +QHE DHL+G +F DHLS ++ MI K+ L+Q + Sbjct: 121 DENLVEHEEWIEGYLARVIQHEFDHLDGKVFTDHLSPFRKQMINSKLKALLQGK 174 >gi|120599034|ref|YP_963608.1| peptide deformylase [Shewanella sp. W3-18-1] gi|146292895|ref|YP_001183319.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|120559127|gb|ABM25054.1| peptide deformylase [Shewanella sp. W3-18-1] gi|145564585|gb|ABP75520.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|319426575|gb|ADV54649.1| peptide deformylase [Shewanella putrefaciens 200] Length = 163 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 102/167 (61%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I + ID+++E MY TD GIGLAA Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAVQGFIDDLIETMYHTDDGIGLAATQVGSTDAII 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D R P+V INP+I+ S +F V +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSD--GRDQPLVLINPEIVEKSGEF-VGEEGCLSIPGYRAKVSRFEKVKVTALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRKYA 163 >gi|160889625|ref|ZP_02070628.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492] gi|270293967|ref|ZP_06200169.1| polypeptide deformylase [Bacteroides sp. D20] gi|317479180|ref|ZP_07938317.1| polypeptide deformylase [Bacteroides sp. 4_1_36] gi|156860617|gb|EDO54048.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492] gi|270275434|gb|EFA21294.1| polypeptide deformylase [Bacteroides sp. D20] gi|316904668|gb|EFV26485.1| polypeptide deformylase [Bacteroides sp. 4_1_36] Length = 185 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI+NM E M + +G+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDIAPDYPNLKELIENMFETMDNAEGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +L ++ +IN I+ S + EGCLS+P VKR I V+Y+D Sbjct: 61 NLDVLSDDLPEYKDFRKAYINAHILEVSGEEVSMDEGCLSLPGIHESVKRGNKIRVQYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N + +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ + Sbjct: 121 ENLEPHDEIIEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173 >gi|225010669|ref|ZP_03701139.1| peptide deformylase [Flavobacteria bacterium MS024-3C] gi|225005222|gb|EEG43174.1| peptide deformylase [Flavobacteria bacterium MS024-3C] Length = 196 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L++V+ I + ++ +LI+NM E MY G+GLAA QIG+ RL VI Sbjct: 1 MILPIVAYGDPVLKKVANAIAADHPNLESLIENMWETMYHAHGVGLAAPQIGLPIRLFVI 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A ++ VFIN I + + + EGCLSIPD R DV R Sbjct: 61 DATPFADDEDLTQSEQDALKNFKAVFINATITEETGEEWTFNEGCLSIPDVREDVIRKPK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D + DGL+A +QHE DH+ GILF D LS LK+ ++ ++S + + + Sbjct: 121 ITITYQDETFKTHTKTFDGLVARVIQHEYDHIEGILFTDKLSSLKKRILKGRLSNISKGK 180 >gi|40063276|gb|AAR38094.1| polypeptide deformylase [uncultured marine bacterium 578] Length = 165 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 95/150 (63%), Gaps = 3/150 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PD LR +++P+ +NSDI + +M E MY GIGLAA Q+ R++VI Sbjct: 1 MILDILKYPDKRLRTIAKPVVSVNSDIKKQVKDMFETMYDAPGIGLAATQVNFHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + P INP+II S + ++EGCLS+PDY +VKR+ I V ++ + Sbjct: 61 DISE--DCNQPFCLINPEIIEKSGEIE-WEEGCLSVPDYYENVKRANKIKVCALNEHGNT 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 I A+ +LA C+QHE+DHLNGILF+DHLS Sbjct: 118 FDIEANEMLAICIQHEMDHLNGILFVDHLS 147 >gi|320355330|ref|YP_004196669.1| peptide deformylase [Desulfobulbus propionicus DSM 2032] gi|320123832|gb|ADW19378.1| peptide deformylase [Desulfobulbus propionicus DSM 2032] Length = 168 Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +P P+LR+ + I + ++ LI++M + MY+ G+GLAA QIGV +LV+ Sbjct: 1 MAIREIITYPHPVLRQKAEKITVFDQELATLIEDMADTMYNAPGVGLAANQIGVARQLVL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +N +V INP+I + + +EGCLS+ + VKR I V +D Sbjct: 61 VDRSTKDNERNYLVLINPEI-SAGEGSVTDEEGCLSVIECYDKVKRFKKIHVTALDREGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A+ A +QHE+DHL G LFID LS Sbjct: 120 PLEFDAEDRFARIIQHEVDHLLGTLFIDRLS 150 >gi|288801322|ref|ZP_06406776.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039] gi|288331705|gb|EFC70189.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039] Length = 187 Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats. Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V++ I ++ LI NM E M + DGIGLAA QIG RL VI Sbjct: 1 MILPIYVYGQPVLRKVAQDITPDYPELKELIANMFETMDNADGIGLAAPQIGRSIRLSVI 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL ++ FINP I+ ++ +EGCLSIP +V R I V++ Sbjct: 61 DLDVLSEYYPEYKGFRKAFINPHILEVDEESEMLTSEEGCLSIPGIHENVDRRTRIHVKW 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 MD + +G LA +QHE DHL+G+LF D +S L++ ++ K++ + + + Sbjct: 121 MDEEFTEHDEWIEGYLARVMQHEFDHLDGVLFTDRISPLRKQLVKNKLTAMSKGK 175 >gi|257469368|ref|ZP_05633462.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185] gi|317063614|ref|ZP_07928099.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185] gi|313689290|gb|EFS26125.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185] Length = 173 Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 2/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+LR + +E ++ +I ++ +M E MY G+GLAA QIG+ R++V+ Sbjct: 1 MIYEIKKYGDPVLREKTVEVETVDDNIREILQDMAETMYDKKGVGLAAPQIGISKRMLVL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D +V NP I +++ ++EGCLSIP V+R A I V Y++ + Sbjct: 61 DWSGEGEALRKVV--NPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIRVDYLNEKGEK 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G A +QHE DHL +LF+D +S + + M+TKK+ L + Sbjct: 119 VTEELEGFPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQALKKE 165 >gi|114330413|ref|YP_746635.1| peptide deformylase [Nitrosomonas eutropha C91] gi|114307427|gb|ABI58670.1| peptide deformylase [Nitrosomonas eutropha C91] Length = 168 Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +++ + + +I L NM E MY+ G+GLAA Q+ V R+VV Sbjct: 1 MAILNILRYPDERLHKIAAVVPSVTREIRILASNMAETMYAAAGVGLAATQVDVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R +V INP+II + QEGCLS+P V R+ ITVR D + + Sbjct: 61 IDTSET--RDELLVLINPEIIASTGKSET-QEGCLSVPGIFDKVSRAEQITVRATDIDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A GLLA C+QHE+DHL G +F+++LS K+ I K+ K + Sbjct: 118 SFEMDATGLLAVCIQHEMDHLIGKVFVEYLSPFKQSRILSKLKKQAR 164 >gi|294782531|ref|ZP_06747857.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA] gi|294481172|gb|EFG28947.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA] Length = 174 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 101/169 (59%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + D +L+++++ +E +IN + +D+M+E MY TDGIGLAA Q+GV R+ Sbjct: 1 MVFEIRKYGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + + RK INP I +++ ++EGCLS+P V+R + + Y++ N Sbjct: 61 VCEDGNRKIRK----IINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVKLNYLNENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LLA +QHE DHLNGILF++ +S + + +I KK++ + + Sbjct: 117 ETVEEIAEDLLAVVVQHENDHLNGILFVEKISPIAKRLIAKKLANMKKE 165 >gi|212703762|ref|ZP_03311890.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098] gi|212672730|gb|EEB33213.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098] Length = 170 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +P L+ P+ +I +I L +MLE MY G+GLAA Q+G R++V+ Sbjct: 1 MILDIVTYPAASLKEKCVPVTEITDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQ 120 D K P V INP++ + QEGCLS+P +YRADV+R+ + +RYMD + + Sbjct: 61 DPAAQDEEKQPRVVINPELTLSEETVLSRQEGCLSVPLNYRADVQRAERVHLRYMDLDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G A +QHE DHL+G LFID + RL+R + ++ K ++ + Sbjct: 121 IVEEDLEGFAAIVIQHEADHLDGTLFIDRIGRLRRSLYDTRVKKWLKRK 169 >gi|313886414|ref|ZP_07820134.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I] gi|312924130|gb|EFR34919.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I] Length = 188 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 6/175 (3%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K P+ ++ P+LR +S I ++ LI +M + MY +DG+GLAA QIG RL Sbjct: 1 MAKTLPIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQ 60 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 VID A +V IN + + S++ EGCLS+P V R I V Y Sbjct: 61 VIDATPLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPKSIVVDY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 M+ + Q + G A +QHE DHL+G LF+DH+S +++ MI KK+ + + R Sbjct: 121 MNEQFEPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175 >gi|323493448|ref|ZP_08098570.1| peptide deformylase [Vibrio brasiliensis LMG 20546] gi|323312271|gb|EGA65413.1| peptide deformylase [Vibrio brasiliensis LMG 20546] Length = 167 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 111/168 (66%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + ++ ++S + LID+ML+ +Y+T +GIGLAA+Q+G +V Sbjct: 1 MAVLDILTAPDPRLKVTAEKVQDVSS-VQTLIDDMLDTLYATDNGIGLAAIQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL + +R P++ +NP++++ SD ++ QEGCLS+PDY ADV+R + V +D Sbjct: 60 IIDLSE--NRDEPLILVNPEVVSGSD-KAMGQEGCLSVPDYYADVERFTSVVVSALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +D LA +QHE+DHL+G LFID+LS LKR M KK+ K ++ Sbjct: 117 NQITLESDDFLAIVMQHEIDHLSGNLFIDYLSPLKRQMAMKKVKKYLK 164 >gi|237744608|ref|ZP_04575089.1| polypeptide deformylase [Fusobacterium sp. 7_1] gi|256027377|ref|ZP_05441211.1| polypeptide deformylase [Fusobacterium sp. D11] gi|260494468|ref|ZP_05814598.1| peptide deformylase [Fusobacterium sp. 3_1_33] gi|289765343|ref|ZP_06524721.1| polypeptide deformylase [Fusobacterium sp. D11] gi|229431837|gb|EEO42049.1| polypeptide deformylase [Fusobacterium sp. 7_1] gi|260197630|gb|EEW95147.1| peptide deformylase [Fusobacterium sp. 3_1_33] gi|289716898|gb|EFD80910.1| polypeptide deformylase [Fusobacterium sp. D11] Length = 174 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 102/169 (60%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA Q+GV R+ Sbjct: 1 MVYEIKRYGEEVLKQIAKEVEFNEINDEFRKFLDDMVETMYETDGVGLAAPQVGVSKRVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D + RK INP ++ +++ ++EGCLS+P V+R + ++Y++ N Sbjct: 61 VCDDGNGVVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILF++ +S + + +I KK++ + + Sbjct: 117 EEVEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANIKKE 165 >gi|317967982|ref|ZP_07969372.1| peptide deformylase [Synechococcus sp. CB0205] Length = 200 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 92/151 (60%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR +R I K++ + L +ML MY+ GIGLAA QIGV +L+VIDL+ Sbjct: 31 DIHKLGDEVLREPARRIGKVDDAVRKLATDMLVSMYAAKGIGLAAPQIGVNQQLLVIDLE 90 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP+I + Y+EGCLSIP DV R + + V Y D + + + Sbjct: 91 LEDPSSPPLVLINPEITSVGGGLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDAFGRPKRM 150 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 ADGL+A C+QHE+DHLNG+LF+D ++ ++ Sbjct: 151 KADGLMARCIQHEMDHLNGVLFVDRVTDEEK 181 >gi|282858813|ref|ZP_06267958.1| peptide deformylase [Prevotella bivia JCVIHMP010] gi|282588382|gb|EFB93542.1| peptide deformylase [Prevotella bivia JCVIHMP010] Length = 186 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V++ I D+ LI NM E ++DG+GLAA QIG R+VVI Sbjct: 1 MILPIYTYGQPVLRKVAQDIPTDYPDLQELIQNMFETCSASDGVGLAAPQIGKSIRVVVI 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL ++ FIN I+ F D + + +EGCLS+P V+R+ + + ++ Sbjct: 61 DLDVMSDAFPEYKDYKHAFINGHILEFDDTETEIMEEGCLSLPGLHEKVERAKRVHIEWL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N QH + DG LA +QHE DHL G +F D +S ++ MI KM ++Q + Sbjct: 121 DENLQHHDEWVDGFLARVIQHEFDHLEGKVFTDRVSPFRKQMIKNKMKAMLQGK 174 >gi|332299918|ref|YP_004441839.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707] gi|332176981|gb|AEE12671.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707] Length = 188 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 6/175 (3%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K P+ ++ P+LR +S I ++ LI +M + MY +DG+GLAA QIG RL Sbjct: 1 MAKTLPIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQ 60 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 VID A +V IN + + S++ EGCLS+P V R I V Y Sbjct: 61 VIDATPLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPESIVVDY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 M+ + Q + G A +QHE DHL+G LF+DH+S +++ MI KK+ + + R Sbjct: 121 MNEQFEPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175 >gi|317503055|ref|ZP_07961134.1| peptide deformylase [Prevotella salivae DSM 15606] gi|315665828|gb|EFV05416.1| peptide deformylase [Prevotella salivae DSM 15606] Length = 187 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V++ I + LI +M E M +++G+GLAA QIG R+VVI Sbjct: 1 MILPIYIYGQPVLRKVAQDISPDYPQLKELISDMFESMTASNGVGLAAPQIGKDIRVVVI 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL ++ FIN ++ DD +EGCLS+P V R I V+Y Sbjct: 61 DLDVLSDDFPEYKGFRKAFINAHVLEVDDDSPKETLEEGCLSLPGLSEKVTRPTRIHVKY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + +G LA +QHE DHL G +FID + L++ MI K+ +++ + Sbjct: 121 QDEDFVEHDEWVEGYLARVMQHEFDHLEGKMFIDRIPPLRKQMIYSKLKAMLKGK 175 >gi|227488838|ref|ZP_03919154.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542166|ref|ZP_03972215.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091260|gb|EEI26572.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181995|gb|EEI62967.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 177 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 6/168 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + DP+L + P++++ + L+ +MLE M S G+GLAA Q+GVL R+ V Sbjct: 1 MIRKLRLMGDPVLVSEAEPVDEVTASTKTLVSDMLETMDSAGGVGLAANQVGVLQRVFVY 60 Query: 62 DLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D NP INP ++ + QEGCLSIPD AD +R + V + Sbjct: 61 DCPVDDSDPNPDREYKRGAIINPVWEPVGEEMQLGQEGCLSIPDVYADTERYMNVHVTGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D N + A GLLA C+QHE DHL+G+LFI L++ +R K++ Sbjct: 121 DENGDNVDFEATGLLARCIQHETDHLDGVLFIKRLTKERRKEAMKEIR 168 >gi|3023625|sp|P94601|DEF_FREDI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1772503|emb|CAA71353.1| polypeptide deformylase [Tolypothrix sp. PCC 7601] Length = 187 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 64/143 (44%), Positives = 93/143 (65%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I K++ ++ LI +ML+ MYS DGIGLAA Q+G+ +L+VIDL+ Sbjct: 22 LGDRVLRQPAKRIAKVDDELRQLIRDMLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPDNP 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+V INP I S + V QEGCLSIP+ DVKR + + Y D N + + + A Sbjct: 82 ANPPLVLINPTIKQVSKEICVAQEGCLSIPNVYMDVKRPEVVEIAYKDENGRPKTLKATD 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA C+QHE+DHLNG++F+D + Sbjct: 142 LLARCIQHEMDHLNGVVFVDRVD 164 >gi|198282168|ref|YP_002218489.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667290|ref|YP_002424533.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246689|gb|ACH82282.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519503|gb|ACK80089.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 167 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD L+ V+RPI +++ I L D+M E MY GIGLAA Q+ +RL+V Sbjct: 1 MPLLKILEIPDARLKDVARPIARVDKQIQQLADDMAETMYDAPGIGLAAPQVAAGHRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + +R + + +NP+II + + +EGCLS+P V+R+ +TVR + Sbjct: 61 VDVSE--NRNDLLTLLNPEIIARTGE-EEMKEGCLSVPGVLETVRRAEKVTVRATTVQGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA CLQHE+DHL+G LFIDHLSRLK+ +I +K K V+L D Sbjct: 118 TVELEADGLLAVCLQHEIDHLDGTLFIDHLSRLKQSLIRRKAEKRVRLGD 167 >gi|193213195|ref|YP_001999148.1| peptide deformylase [Chlorobaculum parvum NCIB 8327] gi|238692654|sp|B3QPU5|DEF_CHLP8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|193086672|gb|ACF11948.1| peptide deformylase [Chlorobaculum parvum NCIB 8327] Length = 187 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 97/170 (57%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + DP+L ++P++ ++S I LI +M + MY GIGLAA Q+G RL+V+ Sbjct: 1 MILPINTYSDPVLTAKAKPLKGVDSSIRELIADMFDSMYKAPGIGLAAPQVGHSLRLLVV 60 Query: 62 DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D+ + PMV INP+I++ + + +EGCLS+P DV R + IT+ Y D Sbjct: 61 DISTIKEYADYKPMVVINPRIVSVAG-RNAMEEGCLSVPGVAGDVVRPSKITLHYRDEKF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ++A LQHE+DHL+G LF+D + + R + K + + Q R Sbjct: 120 EEHTEEFSDMMARVLQHEIDHLDGTLFVDRMEKRDRRKVQKTLDAIKQGR 169 >gi|220912934|ref|YP_002488243.1| peptide deformylase [Arthrobacter chlorophenolicus A6] gi|219859812|gb|ACL40154.1| peptide deformylase [Arthrobacter chlorophenolicus A6] Length = 190 Score = 192 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA Q+GV R+ V Sbjct: 1 MTVLPITIWGEPVLHRRASEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKII--TFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + V +NP + S D +EGCLS P + +KR+ + V Sbjct: 61 YKYANDDDAPASGVVVNPVLTLSKISGAAPDPDEEEEGCLSFPGDQYPLKRAEWARVEGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D N Q A G A +QHE DHL+G L+++ L Sbjct: 121 DGNGQPVKFEATGWFARVIQHEYDHLDGKLYVNRL 155 >gi|260432736|ref|ZP_05786707.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] gi|260416564|gb|EEX09823.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] Length = 164 Score = 192 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + P+ +I +I + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTVRPCLPWPDKRLRTKAEPVTEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D A R + NP+I+ S + + E ++P A +KR +TVR+++ + Sbjct: 61 VD--GSAERGRAVRLANPEILHSSIELREHDEASPNLPGVSAKIKRPRAVTVRFLNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G+ AT +QH++DHLNG ++ D LS++KRDM+ +K K Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKK 162 >gi|221054422|ref|XP_002258350.1| formylmethionine deformylase [Plasmodium knowlesi strain H] gi|193808419|emb|CAQ39122.1| formylmethionine deformylase, putative [Plasmodium knowlesi strain H] Length = 242 Score = 192 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V++PDP+LR+ + + ++ L+ +M VMY + G+GLAA Q+ + R++V + L Sbjct: 68 IVLYPDPVLRKKCNEVVNFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISMRIIVWNALY 127 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + ++N VFINP I+ S S EGCLS PD V R +++ Y D + + Sbjct: 128 EKKKKENERVFINPSIVEPSLIRSKLVEGCLSFPDIEGKVDRPRVVSISYYDLDGNKHLK 187 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ A QHE DHL+GILFID S+ ++ + K++++++ Sbjct: 188 ILKGIHARIFQHEYDHLDGILFIDRFSQSEKHKVRAKLNEMIR 230 >gi|83941567|ref|ZP_00954029.1| peptide deformylase [Sulfitobacter sp. EE-36] gi|83847387|gb|EAP85262.1| peptide deformylase [Sulfitobacter sp. EE-36] Length = 153 Score = 192 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 22 EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMVFINPKI 80 + ++ +L D+ML MY GIGLAA QIGV+ RL+V+D ++ P+V NP+I Sbjct: 2 TDMTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGETPRPLVMFNPEI 61 Query: 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 I SD + Y+EGCLSIP+ ADV R A + VR++D + Q L ATC+QHE+DH Sbjct: 62 IAASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDH 121 Query: 141 LNGILFIDHLSRLKRDMITKKMSKLVQL 168 L+G LFID+L +KR MIT+KM+KL + Sbjct: 122 LDGKLFIDYLKPMKRQMITRKMTKLKRE 149 >gi|91225452|ref|ZP_01260574.1| peptide deformylase [Vibrio alginolyticus 12G01] gi|91189815|gb|EAS76088.1| peptide deformylase [Vibrio alginolyticus 12G01] Length = 168 Score = 192 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 110/170 (64%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + +++ I LID+MLE +Y+T +GIGLA+ Q+G +V Sbjct: 1 MAVLEILSIPDPRLKVKAEKVTDVST-IQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D R +P++ +NP++++ ++ ++ QEGCLS+P+Y ADV+R + V +D + Sbjct: 60 VIDISD--ERNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 117 NPITIESGEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKSQ 166 >gi|258647932|ref|ZP_05735401.1| peptide deformylase [Prevotella tannerae ATCC 51259] gi|260851771|gb|EEX71640.1| peptide deformylase [Prevotella tannerae ATCC 51259] Length = 185 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 10/176 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V++ IE + LI++M E M +DG+GLAA QIG R++VI Sbjct: 1 MILPIYTYGQPVLRKVAQDIEADFPGLEQLIEDMYETMDKSDGVGLAAPQIGKAIRVIVI 60 Query: 62 -------DLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113 D ++A ++ +INP II F D + S +EGCLS+P VKR I V+ Sbjct: 61 SLDVLKEDFPEYAGFRH--AYINPHIIEFDDSEISTLEEGCLSLPGIHEPVKRPTRIHVQ 118 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Y D N + + +G LA +QHE+DHL G +F D +S L++ M+ K++ + + + Sbjct: 119 YRDENFEPHDEWVEGYLARVMQHEIDHLEGHVFTDRISPLRKQMVKNKLNAIRKGK 174 >gi|86131930|ref|ZP_01050527.1| peptide deformylase [Dokdonia donghaensis MED134] gi|85817752|gb|EAQ38926.1| peptide deformylase [Dokdonia donghaensis MED134] Length = 196 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + P+L++ ++ I ++ L++NM E MY G+GLAA Q+G+ R+ ++ Sbjct: 1 MILPIVAYGSPVLKKKAKDITPEYPNLSELLENMYETMYGAHGVGLAAPQVGLPIRIFLV 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A ++ FIN +I+ + + EGCLSIP DV R Sbjct: 61 DTTPFADDESFTPEEQKQLSSFKKTFINAEILEEEGEEWAFSEGCLSIPGINEDVFRKPT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +T++Y D N + +GL+A +QHE DH++GILF D LS LK+ +I K++ + + + Sbjct: 121 VTIKYQDENFKEHTETYEGLIARVIQHEYDHIDGILFTDKLSSLKKRLIKGKLANISKGK 180 >gi|269102516|ref|ZP_06155213.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162414|gb|EEZ40910.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP 102761] Length = 171 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 75/171 (43%), Positives = 106/171 (61%), Gaps = 5/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58 M ++ P+P LR + + + ++ I L+D+ML+ MY T +GIGLAA Q+G + Sbjct: 1 MAVLEILTEPNPKLRVQAEDVVDVKAEHIQTLVDDMLQTMYETGNGIGLAAPQVGRKEAI 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +VIDL + R P VFINPKI+ ++ V QEGCLS+PDY ADV+R I + +D + Sbjct: 61 IVIDLSE--ERNEPQVFINPKIV-RGENPVVGQEGCLSVPDYYADVERFEKIAITALDRD 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D LA LQHE+DHL GILFID+LS LKR M KK+ K ++ + Sbjct: 118 GNEINMERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKYLRSQ 168 >gi|126174517|ref|YP_001050666.1| peptide deformylase [Shewanella baltica OS155] gi|153000548|ref|YP_001366229.1| peptide deformylase [Shewanella baltica OS185] gi|160875185|ref|YP_001554501.1| peptide deformylase [Shewanella baltica OS195] gi|217973486|ref|YP_002358237.1| peptide deformylase [Shewanella baltica OS223] gi|304408620|ref|ZP_07390241.1| peptide deformylase [Shewanella baltica OS183] gi|307305448|ref|ZP_07585196.1| peptide deformylase [Shewanella baltica BA175] gi|125997722|gb|ABN61797.1| peptide deformylase [Shewanella baltica OS155] gi|151365166|gb|ABS08166.1| peptide deformylase [Shewanella baltica OS185] gi|160860707|gb|ABX49241.1| peptide deformylase [Shewanella baltica OS195] gi|217498621|gb|ACK46814.1| peptide deformylase [Shewanella baltica OS223] gi|304352441|gb|EFM16838.1| peptide deformylase [Shewanella baltica OS183] gi|306911751|gb|EFN42176.1| peptide deformylase [Shewanella baltica BA175] gi|315267381|gb|ADT94234.1| peptide deformylase [Shewanella baltica OS678] Length = 163 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 101/167 (60%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I + ID+++E MY TD GIGLAA Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAVQGFIDDLIETMYHTDDGIGLAATQVGSTDAII 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D R P V INP+I+ S +F V +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSD--GRDQPQVLINPEIVEKSGEF-VGEEGCLSIPGYRAKVSRFEKVKVTALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRKYA 163 >gi|145296738|ref|YP_001139559.1| peptide deformylase [Corynebacterium glutamicum R] gi|140846658|dbj|BAF55657.1| hypothetical protein [Corynebacterium glutamicum R] Length = 193 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++ + + S++ LI +M E M +G+GLAA QIGV R+ V Sbjct: 1 MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D + FINP + T D +EGCLS+P R+ + V Sbjct: 61 YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRAHWAKVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ + + A+G LA C QHE+ HL+G L+ D L + M K + Sbjct: 121 LNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIKA 170 >gi|312890426|ref|ZP_07749963.1| peptide deformylase [Mucilaginibacter paludis DSM 18603] gi|311297196|gb|EFQ74328.1| peptide deformylase [Mucilaginibacter paludis DSM 18603] Length = 190 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 6/173 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +K P++ + DP+LRR + IE I L++NM E MY+ G+GLAA Q+G+ RL V Sbjct: 1 MKYPIIAYGDPVLRRAATNIEPDEYPHIKELVENMFETMYAARGVGLAAPQVGLSMRLFV 60 Query: 61 IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID + VFIN K++ + + + EGCLSIPD R DV R + + Y Sbjct: 61 IDATPFDDDEPELKDFKKVFINAKVLEETGEEWSFNEGCLSIPDIREDVYRKPVVRLSYY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D N +H GL A +QHE DH+ G LF D LS L++ +I KK++ + + Sbjct: 121 DENWKHHEETFKGLAARVIQHEYDHIEGKLFTDKLSPLRKRLIQKKLTDISKG 173 >gi|184201105|ref|YP_001855312.1| peptide deformylase [Kocuria rhizophila DC2201] gi|183581335|dbj|BAG29806.1| peptide deformylase [Kocuria rhizophila DC2201] Length = 189 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 5/175 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI P+L R + + + ++ + L+ ++ E M ++ G+GLAA QIGV R+ Sbjct: 1 MSIRPIVISGHPVLHRPAARVTEFDAALRTLVADLHETMDASHGVGLAAPQIGVGLRIFT 60 Query: 61 IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ +NP KI D EGCLS+P +KR+ ++ + Sbjct: 61 YLYENEDGVPPRGTLVNPVLTTGKISEVVPDPDEESEGCLSVPGQAWPLKRADWVRIAGQ 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 D N A+G A +QHE DHL+G L++D L+ K + + D Sbjct: 121 DENGDPVAFEANGWFARVMQHEYDHLDGKLYVDRLNPKWSRRARKAIRREEWGTD 175 >gi|152991610|ref|YP_001357331.1| peptide deformylase [Sulfurovum sp. NBC37-1] gi|151423471|dbj|BAF70974.1| formylmethionine deformylase [Sulfurovum sp. NBC37-1] Length = 174 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 63/175 (36%), Positives = 104/175 (59%), Gaps = 8/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+PD L+++SR + + + +L+D+M E M + +G+GLAA+Q+GV R ++I Sbjct: 1 MVREIVIYPDKRLKQISREVGSFDGALHDLLDDMYETMIARNGVGLAAIQVGVDLRALII 60 Query: 62 DLQDHAH-------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ ++N + INP I+ D +QEGCLS+P DV+R+ + V Y Sbjct: 61 NVPLEKEEGEHDQPKENTLEMINPVIVEM-DGKEKFQEGCLSVPGVYEDVERAKHVKVEY 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + II D LA +QHE+DHL+G +FI+ LS LKR K+ +K + + Sbjct: 120 YDRNGEKHIIEDDDFLAIAMQHEIDHLDGKVFIEKLSFLKRKKFEKEWAKRQKAQ 174 >gi|83855044|ref|ZP_00948574.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] gi|83842887|gb|EAP82054.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] Length = 153 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 22 EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMVFINPKI 80 + ++ +L D+ML MY GIGLAA QIGV+ RL+V+D ++ P+V NP+I Sbjct: 2 TDMTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGEAPRPLVMFNPEI 61 Query: 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 I SD + Y+EGCLSIP+ ADV R A + VR++D + Q L ATC+QHE+DH Sbjct: 62 IAASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDH 121 Query: 141 LNGILFIDHLSRLKRDMITKKMSKLVQL 168 L+G LFID+L +KR MIT+KM+KL + Sbjct: 122 LDGKLFIDYLKPMKRQMITRKMTKLKRE 149 >gi|25029133|ref|NP_739187.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|259505872|ref|ZP_05748774.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|39931150|sp|Q8FMD0|DEF2_COREF RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|23494420|dbj|BAC19387.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314] gi|259166546|gb|EEW51100.1| peptide deformylase [Corynebacterium efficiens YS-314] Length = 193 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L +R + + S++ LI +M E M +G+GLAA QIGV R+ V Sbjct: 1 MTVRPIVIHGDPVLHNPTREVTEPISELQELIADMYETMEVANGVGLAANQIGVSKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + D + FINP + T D +EGCLS+P R+ + V Sbjct: 61 FNCPDDEGTMHRGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRADWAKVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ + + + G LA C QHE+ HL+G+++ D L + + K + Sbjct: 121 LNEDGEEWSMEGTGFLARCFQHEVGHLDGVVYTDTLIGRWKRLAKKTIKA 170 >gi|261419369|ref|YP_003253051.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297530654|ref|YP_003671929.1| peptide deformylase [Geobacillus sp. C56-T3] gi|319766184|ref|YP_004131685.1| peptide deformylase [Geobacillus sp. Y412MC52] gi|261375826|gb|ACX78569.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297253906|gb|ADI27352.1| peptide deformylase [Geobacillus sp. C56-T3] gi|317111050|gb|ADU93542.1| peptide deformylase [Geobacillus sp. Y412MC52] Length = 157 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +PDPIL + P+ + + L+D+M E M + DG+GLAA QIGV ++ V Sbjct: 1 MSVLPIVTYPDPILEQPCAPVTAFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R INP +I + V EGCLS P +V R+ F+ VR + + Sbjct: 61 IDVGDEHGRIE---LINPVVIEARGE-QVDVEGCLSFPGLFGEVPRAKFVKVRAQNRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A G LA LQHE+DHL+G+LF + R Sbjct: 117 PFTLSATGFLARALQHEIDHLHGVLFTSKVIR 148 >gi|19553932|ref|NP_601934.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|62391575|ref|YP_226977.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|39931164|sp|Q8NM41|DEF2_CORGL RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|21325511|dbj|BAC00133.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC 13032] gi|41326917|emb|CAF20761.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032] Length = 193 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++ + + S++ LI +M E M +G+GLAA QIGV R+ V Sbjct: 1 MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D + FINP + T D +EGCLS+P R+ + V Sbjct: 61 YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRAHWAKVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ + + A+G LA C QHE+ HL+G L+ D L + M K + Sbjct: 121 LNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIKA 170 >gi|288817601|ref|YP_003431948.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|288787000|dbj|BAI68747.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|308751198|gb|ADO44681.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] Length = 169 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 98/169 (57%), Gaps = 2/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ FP P+L+ ++ ++ I+ D+ +++ +M E MY +G+GLAA QIG+ ++VI Sbjct: 1 MVREIIKFPHPVLKMPTQKVDVIDKDVQSIVGDMFETMYHAEGVGLAANQIGISLSIMVI 60 Query: 62 DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP+++ + Y+EGCLS P +V R + + V+ +D N + Sbjct: 61 DTSKKEDSPLLKAVMINPELLEAEGE-VKYKEGCLSFPGLSVEVSRYSKVKVKALDINGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++ +G A QHE+DHL GI FID ++ +KR + K +KL + + Sbjct: 120 EKLYLLEGFPAIVFQHEMDHLMGITFIDRVNGIKRRLALDKYAKLQKEK 168 >gi|313674138|ref|YP_004052134.1| peptide deformylase [Marivirga tractuosa DSM 4126] gi|312940836|gb|ADR20026.1| peptide deformylase [Marivirga tractuosa DSM 4126] Length = 185 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 4/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + P+L+ + I+K D+ L+D+M E MY+ +G+GLAA QIG RL VI Sbjct: 1 MIYPIVAYGHPVLKTKGKDIDKGEIDVKTLVDDMFETMYNANGVGLAAPQIGKSLRLFVI 60 Query: 62 DLQD-HAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D P V FINP+I+ + ++EGCLSIP+ R DV R I ++Y D Sbjct: 61 DTDPIDDEEDQPKVKQAFINPQILEEEGEEWAFEEGCLSIPNIREDVNRKPTIRIKYFDE 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N DG +A +QHE DH+ GILF DH+S K+ ++ K++ + + + Sbjct: 121 NWNEHEKEYDGFVARVIQHEYDHIEGILFTDHVSAFKKRILKGKLANISKGK 172 >gi|328884922|emb|CCA58161.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712] Length = 210 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + + LID+M + +G+GLAA QIGV ++ V Sbjct: 34 TARPITVVGNPVLHKECKDVTEFDDSLAALIDDMFASQKAAEGVGLAANQIGVDLKVFVY 93 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V +NP + + EGCLS+P A++ R + V D Sbjct: 94 DCPDDEGVRHTGVVVNPVLQELPAELRVLDESNEGCLSVPTAYAELARPDYAEVHGQDAQ 153 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M + Sbjct: 154 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 199 >gi|253583796|ref|ZP_04860994.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725] gi|251834368|gb|EES62931.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725] Length = 173 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 2/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+LR + +E ++ +I ++ NM+E MY G+GLAA Q+G+ R++V+ Sbjct: 1 MIYEIKKYGDPVLREKTVEVETVDDNIREILQNMVETMYDKKGVGLAAPQVGISKRMLVL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + INP I +++ ++EGCLSIP V+R A I V Y++ + Sbjct: 61 DWTGEGEELRKV--INPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIKVDYLNEKGEK 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G A +QHE DHL +LF+D +S + + M+TKK+ L + Sbjct: 119 ITEELEGFPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQALKKE 165 >gi|323344260|ref|ZP_08084486.1| peptide deformylase [Prevotella oralis ATCC 33269] gi|323094989|gb|EFZ37564.1| peptide deformylase [Prevotella oralis ATCC 33269] Length = 187 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V++ I D+ LI +M E + ++DG+GLAA QIG R+ VI Sbjct: 1 MILPIYIYGQPVLRKVAKDITPDYPDLEELIKDMFETLTASDGVGLAAPQIGKSIRVAVI 60 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL + ++ +INP II D + +EGCLSIP V R + I V+Y Sbjct: 61 DLDVLSGELPEYKDFRKAYINPHIIEIDDNSKKEIMEEGCLSIPGIHESVTRPSRIHVQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 MD + DG LA +QHE DHL+G +F+D LS ++ M+ K+ L+Q + Sbjct: 121 MDTAFVQHDEWVDGYLARVMQHEFDHLDGTMFVDRLSPFRKQMVNSKLKALIQGK 175 >gi|296328150|ref|ZP_06870681.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154662|gb|EFG95448.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 174 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 101/169 (59%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ Sbjct: 1 MVYEIKKYGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D + RK INP I+ +++ ++EGCLS+P V+R + ++Y++ Sbjct: 61 VCDDGNGVLRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILFI+ +S + + +I KK++ + + Sbjct: 117 KEVEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANIKKE 165 >gi|296269346|ref|YP_003651978.1| peptide deformylase [Thermobispora bispora DSM 43833] gi|296092133|gb|ADG88085.1| peptide deformylase [Thermobispora bispora DSM 43833] Length = 182 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR + P+ + ++ L+ ++ + M +G GLAA QIGV R+ Sbjct: 1 MAIRQIRLFGDPVLRTPAEPVVDFDKELRKLVKDLTDTMLDANGAGLAAPQIGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + + +EGCLS P R+ + + + Sbjct: 61 YNVDGQLG-----HLVNPNLDLSDEMDEEGEEGCLSFPGLSYPTPRAIRAVAKGFNMYGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I L+A CLQHE DHL+GILFID ++ R + K + + Sbjct: 116 PVTIEGTELMARCLQHETDHLDGILFIDRMNPEHRRLAMKAIREAEW 162 >gi|153836422|ref|ZP_01989089.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] gi|149750324|gb|EDM61069.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] Length = 168 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 111/170 (65%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + +++ I LID+MLE +Y+T +GIGLA+ Q+G +V Sbjct: 1 MAVLEILSIPDPRLKVKAEKVTDVST-IQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D R +P++ +NP++++ ++ ++ QEGCLS+P+Y ADV+R + V +D + Sbjct: 60 VIDISD--ERNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +D LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 117 SPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166 >gi|218248691|ref|YP_002374062.1| peptide deformylase [Cyanothece sp. PCC 8801] gi|257061756|ref|YP_003139644.1| peptide deformylase [Cyanothece sp. PCC 8802] gi|218169169|gb|ACK67906.1| peptide deformylase [Cyanothece sp. PCC 8801] gi|256591922|gb|ACV02809.1| peptide deformylase [Cyanothece sp. PCC 8802] Length = 187 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 90/147 (61%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ ++ I K++ I L ML+ MYS++GIGLAA Q+GV +L+V+D Sbjct: 18 EIHFLGDRVLRQPAKRIAKVDDTIRQLAKEMLQTMYSSNGIGLAAPQVGVHKQLIVVDCD 77 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P++ INP+I FS + V +EGCLSIP DV R I V + D + + + Sbjct: 78 PNDPANQPIILINPQITRFSQELCVVEEGCLSIPGVYLDVTRPKAIEVSFRDEQGKPRKL 137 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 A LLA +QHE+DHLNG++F+D ++ Sbjct: 138 QATDLLARVIQHEMDHLNGVMFVDRVN 164 >gi|83589748|ref|YP_429757.1| peptide deformylase [Moorella thermoacetica ATCC 39073] gi|123766806|sp|Q2RK25|DEF_MOOTA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|83572662|gb|ABC19214.1| peptide deformylase [Moorella thermoacetica ATCC 39073] Length = 155 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 67/153 (43%), Positives = 98/153 (64%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ DP+LR S+P+ KI S++ L+DN+ + MY G+GLAA QIGVL R++V Sbjct: 1 MAIHKILTLGDPLLREKSQPVRKITSNVWKLLDNLADTMYDAPGVGLAAPQIGVLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + INP++I S + V EGCLSIP + +V R+A +TVR +D + + Sbjct: 61 VDVGE-----GLTELINPEVIAASGE-EVGAEGCLSIPGAQGEVPRAAVVTVRGLDRHGR 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I A+GL A LQHE+DHL+GILFID + R Sbjct: 115 VREIRAEGLYARALQHEIDHLDGILFIDKVVRW 147 >gi|189184237|ref|YP_001938022.1| peptide deformylase [Orientia tsutsugamushi str. Ikeda] gi|238692021|sp|B3CTU1|DEF_ORITI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189181008|dbj|BAG40788.1| methionyl-tRNA deformylase [Orientia tsutsugamushi str. Ikeda] Length = 181 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 101/174 (58%), Gaps = 9/174 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M L+ PDPIL++V+ P++ +N I L+D+MLE MY G+GLAA Q+ V R++V Sbjct: 1 MSILSLITAPDPILKKVASPVDTVNDSIRQLMDDMLETMYHNHGVGLAAPQVAVSKRIIV 60 Query: 61 IDLQDHA---------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +DL K P+ +NP + S+ + +EGCLS+P +V R I Sbjct: 61 LDLSKVDIKEDNITNSEYKYPLFMVNPIVKAISNQTATAKEGCLSLPKQAIEVSRYHEIQ 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 V Y+D + + A+G LA +QHE+DHL+GIL +D+LS LK++ +SK+ Sbjct: 121 VTYLDYYNKLTTLNAEGWLARAIQHEVDHLDGILLVDYLSNLKKEAALNTLSKI 174 >gi|150016029|ref|YP_001308283.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] gi|149902494|gb|ABR33327.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] Length = 152 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 92/151 (60%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ R ++KI+ ++ LI++M E MY DG+GLAA Q+G+L RL V Sbjct: 1 MALRNIRKYGDDVLRKKCREVDKIDDRLLTLIEDMKETMYDADGVGLAAPQVGILKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D P+VFINP+II S + +EGCLS+P +V R ++ R ++ + Sbjct: 61 VDIGD-----GPLVFINPEIIETSGS-QIDEEGCLSLPGETEEVMRPNYVRARALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I A+ LLA + HE DHLNG LFID + Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRVK 145 >gi|238063927|ref|ZP_04608636.1| peptide deformylase [Micromonospora sp. ATCC 39149] gi|237885738|gb|EEP74566.1| peptide deformylase [Micromonospora sp. ATCC 39149] Length = 185 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ ++++ L+ ++ + M +G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDAELRRLVADLTDTMREQNGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D +NP + + EGCLSIP D KR + + + Sbjct: 61 FDVDDVLG-----HLVNPVLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVVAKGFNGYGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I GL+A C+QHE DHL+G+LF+D L R K + + Sbjct: 116 PVQIVGTGLMARCVQHETDHLDGVLFVDRLDPAGRKEAMKAIRQAEW 162 >gi|227821802|ref|YP_002825772.1| peptide deformylase [Sinorhizobium fredii NGR234] gi|227340801|gb|ACP25019.1| peptide deformylase-like protein [Sinorhizobium fredii NGR234] Length = 163 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 99/165 (60%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP+P L + + + +S + +L+D++ + M + GIG+ A IGVL R+ V Sbjct: 1 MALRPIIRFPNPALGMSAEMVTRFDSSLRSLVDDLTDTMRAAPGIGITAPHIGVLQRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+L+ A P F+NP++I S++ + EG +S+P +V+R I VRY + + Sbjct: 61 IELERQAG---PRTFVNPQMIWCSEETERHSEGSVSMPGISEEVERPTSIRVRYQTISGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A GL+A CLQHE+D L+GI +I LSRLKR+ K+ KL Sbjct: 118 TLEEEASGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAVKRFEKL 162 >gi|255008473|ref|ZP_05280599.1| peptide deformylase [Bacteroides fragilis 3_1_12] gi|313146202|ref|ZP_07808395.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12] gi|313134969|gb|EFR52329.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12] Length = 184 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+VVI Sbjct: 1 MILPIYVYGQPVLRQVAEDITPDYPNLKELIENMFETMDHADGVGLAAPQIGLPVRVVVI 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +L ++ +IN I D +EGCLS+P VKR + I VRYMD Sbjct: 61 NLDVLSEDYPEYKDFRKAYINAHIDVVEGDEVSMEEGCLSLPGIHESVKRGSKIHVRYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 ENFVEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173 >gi|239929017|ref|ZP_04685970.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291437357|ref|ZP_06576747.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291340252|gb|EFE67208.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] Length = 216 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + R + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECRDVTEFDDELRKLVDDMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP+++ + EGCLS+P A + R + V D Sbjct: 100 DCPDDEGVRHVGVVCNPELVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEW 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKEALRQMAE 205 >gi|329961281|ref|ZP_08299447.1| peptide deformylase [Bacteroides fluxus YIT 12057] gi|328531946|gb|EGF58763.1| peptide deformylase [Bacteroides fluxus YIT 12057] Length = 186 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M + +G+GLAA QIG+ R+V + Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIGNMFETMDNAEGVGLAAPQIGLPIRVVTV 60 Query: 62 DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +L ++ +IN I+ + + +EGCLS+P VKR I V+Y+D Sbjct: 61 NLDVLSEDLPEYKGFRKAYINAHILDVAGEEVSMEEGCLSLPGIHESVKRGDKIHVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N + +G LA +QHE DHL+G +FIDHLS L++ MI K++ L++ + Sbjct: 121 ENLEEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNALLKGK 173 >gi|284032219|ref|YP_003382150.1| peptide deformylase [Kribbella flavida DSM 17836] gi|283811512|gb|ADB33351.1| peptide deformylase [Kribbella flavida DSM 17836] Length = 182 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+L + P+ ++++ L+ ++ + M + G GLAA QIGV R+ Sbjct: 1 MSVQPIRLFGDPVLTTKADPVVDFDAELRRLVADLTDTMQAAPGSGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + INP++ T S + EGCLSIP D +R+ + + Sbjct: 61 YHVDGELG-----HLINPEL-TLSAEQQFGPEGCLSIPGLTFDCRRAERVIAKGFTMYGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +I LLA C+QHE DHL+G+LF+D L R K + + Sbjct: 115 PVVIEGSDLLARCIQHETDHLDGVLFVDRLDTATRKAAMKAIREAEW 161 >gi|53712973|ref|YP_098965.1| peptide deformylase [Bacteroides fragilis YCH46] gi|60681185|ref|YP_211329.1| peptide deformylase [Bacteroides fragilis NCTC 9343] gi|253563049|ref|ZP_04840506.1| peptide deformylase [Bacteroides sp. 3_2_5] gi|265763070|ref|ZP_06091638.1| peptide deformylase [Bacteroides sp. 2_1_16] gi|81315745|sp|Q5LEQ9|DEF_BACFN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81690706|sp|Q64VP5|DEF_BACFR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|52215838|dbj|BAD48431.1| peptide deformylase [Bacteroides fragilis YCH46] gi|60492619|emb|CAH07391.1| putative peptide deformylase [Bacteroides fragilis NCTC 9343] gi|251946825|gb|EES87107.1| peptide deformylase [Bacteroides sp. 3_2_5] gi|263255678|gb|EEZ27024.1| peptide deformylase [Bacteroides sp. 2_1_16] gi|301162674|emb|CBW22221.1| putative peptide deformylase [Bacteroides fragilis 638R] Length = 184 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+VVI Sbjct: 1 MILPIYVYGQPVLRQVAEDITVDYPNLKELIENMFETMDHADGVGLAAPQIGLPIRVVVI 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +L ++ +IN I + +EGCLS+P VKR + I VRYMD Sbjct: 61 NLDVLSEDYPEYKDFRKAYINAHIDVVEGEEVSMEEGCLSLPGIHESVKRGSKIHVRYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 ENFVEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173 >gi|288925815|ref|ZP_06419746.1| peptide deformylase [Prevotella buccae D17] gi|288337470|gb|EFC75825.1| peptide deformylase [Prevotella buccae D17] Length = 186 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V+ I + LI +M E + +++G+GLAA QIG R+ VI Sbjct: 1 MILPIYIYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVI 60 Query: 62 DLQD-----HAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL ++ +INP I+ F + +EGCLSIP +V R I V+Y Sbjct: 61 DLDVLSDDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + +G LA +QHE DHL+G +F+D +S L++ +I K+ +++ + Sbjct: 121 RDTDFVEHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILKGK 175 >gi|11320966|gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana] Length = 273 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 90/162 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 83 IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A QHE DHL G+LF D ++ D I +++ L + Sbjct: 203 LSSLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 244 >gi|302206252|gb|ADL10594.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis C231] gi|302330810|gb|ADL21004.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis 1002] gi|308276494|gb|ADO26393.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis I19] Length = 169 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DP+L + + + ++ NL+ +MLE M + G+GLAA Q+GV R+ V Sbjct: 1 MTIRDIRFFGDPVLTTRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H INP +D + EGCLSIPD + D R + V D + Sbjct: 61 YDCS-HIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GL++ C+QHE DHL+G+LF+ L + R + + Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHRKDAMATIRQ 163 >gi|254229199|ref|ZP_04922618.1| peptide deformylase [Vibrio sp. Ex25] gi|262395549|ref|YP_003287402.1| peptide deformylase [Vibrio sp. Ex25] gi|151938284|gb|EDN57123.1| peptide deformylase [Vibrio sp. Ex25] gi|262339143|gb|ACY52937.1| peptide deformylase [Vibrio sp. Ex25] Length = 168 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 111/170 (65%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + +++ + LID+MLE +Y+T +GIGLA+ Q+G +V Sbjct: 1 MAVLEILSIPDPRLKVKAEKVTDVST-VQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D R +P++ +NP++++ ++ ++ QEGCLS+P+Y ADV+R + V +D + Sbjct: 60 VIDISD--ERNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +D LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 117 NPMTIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166 >gi|37521797|ref|NP_925174.1| peptide deformylase [Gloeobacter violaceus PCC 7421] gi|39930959|sp|Q7NIF5|DEF2_GLOVI RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|35212795|dbj|BAC90169.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421] Length = 187 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 66/146 (45%), Positives = 92/146 (63%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ S+ I IN ++ L ML+ MYS DGIGLAA Q+GV R++V+D+ Sbjct: 19 IHTLGDRVLRQGSKQISGINDEVRKLAQQMLQTMYSADGIGLAAPQVGVNKRMIVVDIDP 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P+V INP I FS D +V QEGCLS+P ADV+R + Y D N + + Sbjct: 79 ENAARPPLVLINPLIKQFSSDLAVDQEGCLSVPSIYADVRRPERVVATYRDLNGRPVTLE 138 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 A GLLA C+QHE+DHL+G+LF+D + Sbjct: 139 ATGLLARCIQHEIDHLDGVLFVDRVE 164 >gi|262067438|ref|ZP_06027050.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693] gi|291378801|gb|EFE86319.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693] Length = 174 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 101/169 (59%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + D IL+++++ +E +IN + +D+M+E MY TDGIGLAA Q+GV R+ Sbjct: 1 MVFEIRKYGDDILKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D RK INP I +++ ++EGCLS+P V+R + ++Y++ N Sbjct: 61 VCDDGTGKIRK----LINPIIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYINENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LLA +QHE DHLNGILF++ +S + + +I KK++ + + Sbjct: 117 EAVEEIAEDLLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANMKKE 165 >gi|21219721|ref|NP_625500.1| polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|289773087|ref|ZP_06532465.1| polypeptide deformylase [Streptomyces lividans TK24] gi|9716195|emb|CAC01493.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|289703286|gb|EFD70715.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 217 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 78/167 (46%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + ++ L++++ MY+ G+GLAA Q+G R+ V D Sbjct: 51 VRPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYD 110 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 111 CPDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPV 170 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G A CLQHE DHL G ++ D L+ + + +++++ R Sbjct: 171 TVRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVARASWHR 217 >gi|261880357|ref|ZP_06006784.1| peptide deformylase [Prevotella bergensis DSM 17361] gi|270332901|gb|EFA43687.1| peptide deformylase [Prevotella bergensis DSM 17361] Length = 187 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V++ I + LID+M E M ++ G+GLAA QIG R+VVI Sbjct: 1 MILPIYTYGHPVLRKVAQDIPTDYPGLSQLIDDMFETMDASSGVGLAAPQIGKSVRVVVI 60 Query: 62 DL----QDHAHRKN-PMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +L +D+ + +INP II + +EGCLS+P V R + I V+Y Sbjct: 61 NLDVLKEDYPEYADFRHAYINPHIIEVDKKSEKVSMEEGCLSVPGLSEKVVRYSRIRVQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +D Q + +G LA +QHE DHL G++++D ++ L++ +I K+ ++Q + Sbjct: 121 LDEELQPHDEWVEGYLARVMQHEFDHLEGVMYVDRITPLRKQLIRNKLKGIMQGK 175 >gi|237740379|ref|ZP_04570860.1| polypeptide deformylase [Fusobacterium sp. 2_1_31] gi|229422396|gb|EEO37443.1| polypeptide deformylase [Fusobacterium sp. 2_1_31] Length = 174 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 101/169 (59%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + D +L+++++ +E +IN + +D+M+E MY TDGIGLAA Q+GV R+ Sbjct: 1 MVFEIRKYGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYKTDGIGLAAPQVGVSKRVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V +D + INP I +++ ++EGCLS+P V+R + ++Y++ N Sbjct: 61 V--CEDGTGKIRK--LINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYLNENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LLA +QHE DHLNGILF++ +S + + +I KK++ + + Sbjct: 117 EAVEEIAEELLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANMKKE 165 >gi|145594411|ref|YP_001158708.1| peptide deformylase [Salinispora tropica CNB-440] gi|145303748|gb|ABP54330.1| peptide deformylase [Salinispora tropica CNB-440] Length = 186 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ L+ ++++ M +G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLIDTMREQNGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D +NP + + EGCLS+P D KR + + + Sbjct: 61 FDVDDVVG-----HLVNPVLEFPDAEEQDGPEGCLSLPGLYFDTKRRQNVVAKGFNGYGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I GL+A C+QHE DHL+G+LFID L R K++ + Sbjct: 116 PMQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKEIRRAEW 162 >gi|261252741|ref|ZP_05945314.1| peptide deformylase [Vibrio orientalis CIP 102891] gi|260936132|gb|EEX92121.1| peptide deformylase [Vibrio orientalis CIP 102891] Length = 167 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 110/168 (65%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + ++ +++ + LID+MLE +Y+T +GIGLA+ Q+G +V Sbjct: 1 MAVLEILTAPDPRLKVKAEKVQDLST-VQTLIDDMLETLYATDNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL + R P++ +NP++++ SD ++ QEGCLS+PDY ADV+R + V +D Sbjct: 60 IIDLSES--RDEPLILVNPEVVSGSD-KALGQEGCLSVPDYYADVERFTSVVVSALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I +D LA +QHE+DHL+G LFID+LS LKR M KK+ K V+ Sbjct: 117 KPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKRKMAMKKVKKYVK 164 >gi|324997314|ref|ZP_08118426.1| peptide deformylase [Pseudonocardia sp. P1] Length = 193 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+L R +RP+E+++ I L+D+M E M + +G+GLAA Q+GV RL V Sbjct: 1 MTVLRIRMVGDPVLHRPTRPVEQVDDGIRTLVDDMFETMAAANGVGLAANQVGVDLRLFV 60 Query: 61 IDLQDHAHR-KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D R + +NP + T D +EGCLS+P R+ + V Sbjct: 61 YDCPDEETRTMRRGLVVNPVLETSERPQVMPDPDDDEEGCLSVPGESYPTGRADWARVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + + G A CLQHE DHL+G L++D L + KKM K Sbjct: 121 TDLDGEPVDVEGRGFFARCLQHETDHLDGHLYLDRLMG-RNQKAAKKMLK 169 >gi|114047714|ref|YP_738264.1| peptide deformylase [Shewanella sp. MR-7] gi|113889156|gb|ABI43207.1| peptide deformylase [Shewanella sp. MR-7] Length = 163 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I I ID+++E MY TD GIGLA+ Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + +R P+V INP+I+ S ++ V +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSE--NRDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVSRFEKVKVTALDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRKYA 163 >gi|117920762|ref|YP_869954.1| peptide deformylase [Shewanella sp. ANA-3] gi|117613094|gb|ABK48548.1| peptide deformylase [Shewanella sp. ANA-3] Length = 163 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I I ID+++E MY TD GIGLA+ Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R P+V INP+I+ S ++ V +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSET--RDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVTRFEKVKVTALDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRKYA 163 >gi|238924698|ref|YP_002938214.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|259645181|sp|C4ZEV9|DEF_EUBR3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238876373|gb|ACR76080.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|291526147|emb|CBK91734.1| peptide deformylase [Eubacterium rectale DSM 17629] gi|291527119|emb|CBK92705.1| peptide deformylase [Eubacterium rectale M104/1] Length = 158 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 91/151 (60%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+L +V R + ++ I+ LID+MLE MY +G+GLAA Q+G+L R+VV Sbjct: 1 MALRTIRVEGDPVLGKVCREVTEVTPKIVTLIDDMLETMYEANGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+II SD EGCLS+P V R ++ R+M + Sbjct: 61 IDVGE-----GPIVMINPEIIE-SDGEQTGDEGCLSVPGKAGQVTRPNYVKARFMGEDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I + LLA C+ HELDHL+G L+++ + Sbjct: 115 EYEIEGEELLARCICHELDHLDGHLYVEKVE 145 >gi|297192182|ref|ZP_06909580.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486] gi|197720173|gb|EDY64081.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486] Length = 214 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + + LID+M + +G+GLAA QIGV ++ V Sbjct: 38 TSRPITVVGNPVLHKECKDVTEFDDKLAALIDDMFASQKTAEGVGLAANQIGVDLKVFVY 97 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + + + V EGCLS+P A + R + VR D Sbjct: 98 DCPDDEGVRHTGVVCNPVLEELAPEQRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 157 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 158 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 203 >gi|157803421|ref|YP_001491970.1| peptide deformylase [Rickettsia canadensis str. McKiel] gi|166198522|sp|A8EXV2|DEF_RICCK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157784684|gb|ABV73185.1| peptide deformylase [Rickettsia canadensis str. McKiel] Length = 175 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S + ++ +D+ML+ MY D GLAAVQ+G+L R++V Sbjct: 1 MSILPIVTAPDERLKQKSHRVLEVTDQTRKFMDDMLKTMYHEDAAGLAAVQVGILKRILV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH + P + +NP II S++ EGC+S+P R +V R I ++Y+ Sbjct: 61 IDIKDHDPVERPKDFYPLFIVNPDIIDKSEELVTANEGCISVPRQRVEVARPESIKIKYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSSLKRDVVLRKLKKL 170 >gi|288928223|ref|ZP_06422070.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108] gi|288331057|gb|EFC69641.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108] Length = 187 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 99/175 (56%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ +LR+V++ I ++ LI NM E M ++DGIGLAA QIG+ RL+V+ Sbjct: 1 MILPVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVV 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL ++ FINP I+ + +EGCLS+P V R I ++Y Sbjct: 61 DLDVLAETYPEYKGYRKAFINPHIVEIDEQSPTESLEEGCLSLPGIHEKVTRHTRIRMQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +D + + + +G L LQHE+DHL+GILF DHLS ++ +I K+ L+Q + Sbjct: 121 VDEDLKPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQGK 175 >gi|19704492|ref|NP_604054.1| polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|23396540|sp|Q8REF0|DEF_FUSNN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|19714766|gb|AAL95353.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 174 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 101/169 (59%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ Sbjct: 1 MVYKIKKYGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D + RK INP I+ +++ ++EGCLS+P V+R + ++Y++ Sbjct: 61 VCDDGNGVLRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILFI+ +S + + +I KK++ + + Sbjct: 117 KEVEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANIKKE 165 >gi|182436096|ref|YP_001823815.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776722|ref|ZP_08235987.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1] gi|178464612|dbj|BAG19132.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657055|gb|EGE41901.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1] Length = 212 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + + LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECKDVTEFDDALARLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + + + EGCLS+P A + R + VR D Sbjct: 96 DCPDDDGVRHTGVICNPVLEELAPEARVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M + Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201 >gi|330995383|ref|ZP_08319293.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841] gi|329575878|gb|EGG57402.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841] Length = 185 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 6/173 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ F P+LR+V+ I ++ LIDNM E + ++GIGLAA QIG+ RLVVI Sbjct: 1 MVLPIYTFGQPVLRKVAEDITPDYPELKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVI 60 Query: 62 DLQD-----HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +L ++ FINP I+ + D + +EGCLS+P V+R I V Y+ Sbjct: 61 NLDLISDDLPEYKGFVHAFINPHILEYDDAETDSMEEGCLSLPGIHEPVRRPTRIRVSYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D Q + +G LA +QHE DHL+G +F+DHLS L++ M+ K+ L++ Sbjct: 121 DEVFQPHDEWVEGYLARVMQHEFDHLDGKMFVDHLSMLRKQMVKGKLGNLLKG 173 >gi|253699291|ref|YP_003020480.1| peptide deformylase [Geobacter sp. M21] gi|251774141|gb|ACT16722.1| peptide deformylase [Geobacter sp. M21] Length = 172 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 63/165 (38%), Positives = 101/165 (61%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP L++ S P+ I L +M E MY G+GLAA QIGV R++VI Sbjct: 1 MIRTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ +V INP+I+ ++ + +EGCLS+P + A+V+R A I V+ ++ + + Sbjct: 61 DVSGKDETPELIVAINPEIV-HAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLDGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 AD LL+ QHE+DHL+G+LFIDHLS LK+ + K+ + + Sbjct: 120 VTFRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQRAL 164 >gi|116670982|ref|YP_831915.1| peptide deformylase [Arthrobacter sp. FB24] gi|116611091|gb|ABK03815.1| peptide deformylase [Arthrobacter sp. FB24] Length = 190 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA Q+GV RL V Sbjct: 1 MTVLPITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKII--TFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + V +NP + S D EGCLS P + +KR+ + V+ Sbjct: 61 YKFANDDGVPPAGVVVNPVLTLSKVSGALPDPDEEVEGCLSFPGGQYPLKRAEWARVQGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + A A +QHE DHL+G L+++ L K+ + Sbjct: 121 DGDGNPVDFEATEWFARIIQHEYDHLDGKLYVNRLMDRYARKAMKQAKR 169 >gi|317124743|ref|YP_004098855.1| peptide deformylase [Intrasporangium calvum DSM 43043] gi|315588831|gb|ADU48128.1| peptide deformylase [Intrasporangium calvum DSM 43043] Length = 181 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + +F DP+LR + + + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAIKDIRLFGDPVLRTPAAEVIDFDKELRVLVQDLQDTMLDAPGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP ++ SD+ EGCLSIP + +R+ + + + + + Sbjct: 61 YWVDGIVG-----HLVNP-LLALSDEEQEGPEGCLSIPGVTVETRRALSVVAKGQNMHGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++ LLA +QHE DHL+GILF+D L R + + + + Sbjct: 115 PVVLEGTELLARAVQHETDHLDGILFVDRLDPAARKAAMRAIREAEWFGE 164 >gi|158522244|ref|YP_001530114.1| peptide deformylase [Desulfococcus oleovorans Hxd3] gi|238686886|sp|A8ZUK5|DEF_DESOH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158511070|gb|ABW68037.1| peptide deformylase [Desulfococcus oleovorans Hxd3] Length = 173 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 103/168 (61%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P +L+ + P+ I+ + LID+M + MY+ G+GLAAVQ+ RLV+ Sbjct: 1 MTVLDIVTYPADVLKDGALPVANIDGKLQQLIDDMAQTMYAHQGVGLAAVQVDSGLRLVI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D ++ V INP+++ + QEGCLS+P+ R DVKR+A + V +D + Sbjct: 61 YDVSDQREKQQFRVVINPEVVAVDGECVSEQEGCLSVPELRTDVKRAATVRVEGVDREGR 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +I A+GL A LQHE+DHLNG L +D SRLKR++ +K+ K ++ Sbjct: 121 PLVIDAEGLEAIVLQHEIDHLNGTLILDRASRLKRELYKRKVQKRIKQ 168 >gi|295696040|ref|YP_003589278.1| peptide deformylase [Bacillus tusciae DSM 2912] gi|295411642|gb|ADG06134.1| peptide deformylase [Bacillus tusciae DSM 2912] Length = 155 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 62/152 (40%), Positives = 97/152 (63%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR ++P+ K+ +I LID+M + MY+ DGIGLAA Q+G+L R++V Sbjct: 1 MAIRIIRLQGDPILREKAKPVSKVTPNIQRLIDDMADTMYNADGIGLAAPQVGILKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + + +NP+++ + EGCLSIP +ADV R+ + VR D N + Sbjct: 61 ADIGE-----GLLGLVNPEVV-LEEGEQTGPEGCLSIPGIQADVTRAHHVIVRAQDRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+GLLA CL HE+DHL+GILF+D ++ Sbjct: 115 PLVVDAEGLLARCLLHEIDHLDGILFLDRVTD 146 >gi|288923166|ref|ZP_06417311.1| peptide deformylase [Frankia sp. EUN1f] gi|288345479|gb|EFC79863.1| peptide deformylase [Frankia sp. EUN1f] Length = 185 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 5/163 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ DP+LR + + ++ + L+DNM+E MY+ G+GLAA Q+GV ++ V D + Sbjct: 2 PIRTLGDPVLRTPAEAVTVFDAALRRLVDNMIETMYAAPGVGLAAPQVGVSLQVFVFDTE 61 Query: 65 ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D A + P+V +NP + T + EGCLS+P + R+A TVR +D Sbjct: 62 YDPRDVAVPRRPLVVVNPVLETGPGE-QHDDEGCLSVPGHAYPTTRAATATVRGVDATGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ADGLLA C QHE DHL+G L+ID L+ R + Sbjct: 121 AVRYEADGLLARCFQHETDHLHGRLYIDRLTGEDRRAAHAALR 163 >gi|224539752|ref|ZP_03680291.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus DSM 14838] gi|224518630|gb|EEF87735.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus DSM 14838] Length = 184 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I + LI NM E M +G+GLAA QIG+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPGLKELIANMFETMDHAEGVGLAAPQIGLPIRVVVV 60 Query: 62 D----LQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D +D+ KN +INP I+ S + +EGCLS+P VKR I V YMD Sbjct: 61 DLDVLSEDYPEYKNFRKAYINPHILEVSGEEISMEEGCLSLPGIHESVKRGNRIHVTYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ + Sbjct: 121 ENMVEHDEVVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173 >gi|229522817|ref|ZP_04412231.1| peptide deformylase [Vibrio cholerae TM 11079-80] gi|229340034|gb|EEO05042.1| peptide deformylase [Vibrio cholerae TM 11079-80] Length = 168 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ + +T +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLCATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D +R P+V INPK+++ S+ + QEGCLS+PDY ADV+R + V +D Sbjct: 60 VIDLSD--NRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|319955771|ref|YP_004167034.1| peptide deformylase [Nitratifractor salsuginis DSM 16511] gi|319418175|gb|ADV45285.1| peptide deformylase [Nitratifractor salsuginis DSM 16511] Length = 177 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 102/177 (57%), Gaps = 10/177 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +V++PD L+ +S+P+E+ + ++ L+D+M E M + +G+GLAA+Q+ V R ++I Sbjct: 1 MIRDIVVYPDKRLKEISQPVERFDEELHTLLDDMYETMIAKNGVGLAAIQVAVPVRALII 60 Query: 62 DLQDHAHRKNPMV---------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ ++P V INP I+ YQEGCLS+P Y +V+R + + Sbjct: 61 NVPVDTDSEDPRVQQPKENTLEVINPVILDAEGKTR-YQEGCLSVPGYFEEVERYKAVRI 119 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Y D + I+ D LA +QHE+DHL G LFI+ LS LKR K+ K ++ + Sbjct: 120 EYQDRYGEKHILEDDDFLAIAVQHEMDHLEGRLFIEKLSLLKRKKFEKEWKKRLRGK 176 >gi|319902632|ref|YP_004162360.1| peptide deformylase [Bacteroides helcogenes P 36-108] gi|319417663|gb|ADV44774.1| peptide deformylase [Bacteroides helcogenes P 36-108] Length = 185 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 100/173 (57%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LIDNM E M + +G+GLAA QIG+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIDNMFETMDNAEGVGLAAPQIGLPIRVVVV 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +L ++ V+IN I+ + + +EGCLS+P V+R I V+Y+D Sbjct: 61 NLDVLSDDMPEYKDFRKVYINAHILDVAGEEVSMEEGCLSLPGIHESVRRGDKIRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K+ L++ + Sbjct: 121 ENMVAHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLGSLLKGK 173 >gi|327312425|ref|YP_004327862.1| peptide deformylase [Prevotella denticola F0289] gi|326944165|gb|AEA20050.1| peptide deformylase [Prevotella denticola F0289] Length = 214 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVI Sbjct: 29 MVLPIYTYGQPVLRKVAADIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVI 88 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL ++ FIN I+ D + +EGCLS+P V R+ I V+Y+ Sbjct: 89 DLDVLSDTFPEYKDFRHAFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVKYL 148 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + DG LA +QHE DHL+G +F DHLS +R MI+ K+ L+Q + Sbjct: 149 DENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQGK 202 >gi|256420948|ref|YP_003121601.1| peptide deformylase [Chitinophaga pinensis DSM 2588] gi|256035856|gb|ACU59400.1| peptide deformylase [Chitinophaga pinensis DSM 2588] Length = 192 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 13/181 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + P+LR++ I + L+ NM E MY+++G+GLAA QI RL V+ Sbjct: 1 MILPIVAYGHPVLRKMCEDITPDYPQLEQLLANMWETMYASNGVGLAAPQINRPIRLFVV 60 Query: 62 D-------LQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 D L++ + P FIN I++ + + Y EGCLSIP R DV R Sbjct: 61 DSEQIINSLEEDEKKDFPGDNGIKQAFINAHIVSTAGEEWAYNEGCLSIPKVREDVYRPE 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +T+RY+D Q Q G+ A + HE DH++G LFIDHL LKR MI K+ + + Sbjct: 121 SVTLRYVDEKFQPQEKTFTGITARVIFHEYDHIDGKLFIDHLKPLKRRMIKGKLEDISKG 180 Query: 169 R 169 + Sbjct: 181 K 181 >gi|260912122|ref|ZP_05918678.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295] gi|260633728|gb|EEX51862.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295] Length = 187 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ +LR+V++ I ++ LI NM E M ++DGIGLAA QIG+ RL+V+ Sbjct: 1 MTLPVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVV 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL ++ FINP I+ +EGCLS+P V R I V+Y Sbjct: 61 DLDVLAETYPEYKGYRKAFINPHIVEIDKQSPTESLEEGCLSLPGIHEKVTRHTRIRVQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +D + Q + +G L LQHE+DHL+GILF DHLS ++ +I K+ L+Q + Sbjct: 121 VDEDLQPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQGK 175 >gi|113970479|ref|YP_734272.1| peptide deformylase [Shewanella sp. MR-4] gi|113885163|gb|ABI39215.1| peptide deformylase [Shewanella sp. MR-4] Length = 163 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I I ID+++E MY TD GIGLA+ Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + +R P+V INP+I+ S ++ V +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSE--NRDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVSRFEKVKVTALDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRKYA 163 >gi|119964524|ref|YP_948136.1| peptide deformylase [Arthrobacter aurescens TC1] gi|119951383|gb|ABM10294.1| peptide deformylase [Arthrobacter aurescens TC1] Length = 190 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA QIGV RL V Sbjct: 1 MTVLPVTIWGEPVLHRRASEVEVFDDELRALIADMFETNDAANGVGLAAPQIGVGKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKII--TFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + V +NP + S D + EGCLS P ++R+ + V+ Sbjct: 61 YKYANDDDVPEQGVVVNPVLTLSKVSGALPDPDEHVEGCLSFPGEYYPLQRAEWTRVQGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N A G A LQHE DHL+GIL+++ L K+ K Sbjct: 121 DGNGNALDFEATGWFARILQHEFDHLDGILYVNRLVDRYSKKALKQAKK 169 >gi|332976422|gb|EGK13270.1| peptide deformylase [Desmospora sp. 8437] Length = 156 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 5/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ PDPIL+ +RP+ K N + L+D+M + MY G+GLAA Q+G+ R++V Sbjct: 1 MAIRKIVLVPDPILKEKARPVTKFNERLHKLLDDMADTMYDAPGVGLAAPQVGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +NP++ + EGCLSIP +V+R+ + ++ D Q Sbjct: 61 VD-----DGNGLIEAVNPELFDKEGEQLAPPEGCLSIPGLLGEVRRAEKVRLKARDRQGQ 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G LA LQHE+DHLNGILF D R+ Sbjct: 116 FFELEAEGYLARILQHEVDHLNGILFTDIADRV 148 >gi|297568346|ref|YP_003689690.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2] gi|296924261|gb|ADH85071.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2] Length = 200 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 70/199 (35%), Positives = 105/199 (52%), Gaps = 30/199 (15%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP P L+ ++P+ + N ++ L +M+E M++ G+GLAA QIGV R+VV Sbjct: 1 MAIQPIVQFPVPSLKSRAKPVSEFNDELRRLALDMIETMHAAPGVGLAAPQIGVPLRVVV 60 Query: 61 I-------------DLQDHAHRKNP----------------MVFINPKIITFSDDFSVYQ 91 I Q+H +V INP+I+ + V + Sbjct: 61 IAGRVTLDEEQRAALAQEHGEAGEAAPSPPSPPSEEELAPSLVLINPEIVEA-EGQQVDE 119 Query: 92 EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 EGCLS+ +Y +VKR A I V+ D + Q A+ A +QHELDHL+G LFID +S Sbjct: 120 EGCLSVREYATNVKRFARIRVKAQDLSGQPLDFVAEDFFARVIQHELDHLDGTLFIDRIS 179 Query: 152 RLKRDMITKKMSKLVQLRD 170 LKR + KK+ K++Q + Sbjct: 180 PLKRTLYRKKLKKIMQAEE 198 >gi|312111728|ref|YP_003990044.1| peptide deformylase [Geobacillus sp. Y4.1MC1] gi|311216829|gb|ADP75433.1| peptide deformylase [Geobacillus sp. Y4.1MC1] Length = 157 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +P IL + P+++ + ++ L+++M + M DG+GLAA Q+G+ ++ V Sbjct: 1 MAILPIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R INP+I+ + + EGCLS P A+VKR+ ++ VR D + Sbjct: 61 VDVGDEHGRIE---LINPRIMEARGE-QIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A G LA LQHE+DHLNGILF + R Sbjct: 117 PFTLKATGFLARALQHEIDHLNGILFTSKVIR 148 >gi|302392197|ref|YP_003828017.1| peptide deformylase [Acetohalobium arabaticum DSM 5501] gi|302204274|gb|ADL12952.1| peptide deformylase [Acetohalobium arabaticum DSM 5501] Length = 145 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 92/151 (60%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR ++P++++ LI NM + MY G+GLAA QIG+ R++V Sbjct: 1 MAVLSIRTIGDPVLRTEAKPVDEVTEKTEGLIKNMQDTMYDASGVGLAAPQIGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P+ INP+I+ S + +EGCLSIP+ +V+R+A + V +D + + Sbjct: 61 VDVGE-----GPLALINPEIVESSGS-EIDEEGCLSIPNENGNVERAARVVVDALDSDGR 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I A+GLLA LQHE+DHL GILF+D + Sbjct: 115 EVEIEAEGLLARVLQHEIDHLEGILFVDKVE 145 >gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana] Length = 273 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 90/162 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 83 IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A QHE DHL G+LF D ++ D I +++ L + Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 244 >gi|15241461|ref|NP_196970.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase [Arabidopsis thaliana] gi|30684999|ref|NP_850821.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase [Arabidopsis thaliana] gi|39932734|sp|Q9FUZ2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=AtDEF2; Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana] gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana] gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana] gi|332004676|gb|AED92059.1| peptide deformylase 1B [Arabidopsis thaliana] gi|332004677|gb|AED92060.1| peptide deformylase 1B [Arabidopsis thaliana] Length = 273 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 90/162 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 83 IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A QHE DHL G+LF D ++ D I +++ L + Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 244 >gi|322421200|ref|YP_004200423.1| peptide deformylase [Geobacter sp. M18] gi|320127587|gb|ADW15147.1| peptide deformylase [Geobacter sp. M18] Length = 171 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP L++ S P+ I L+ +M E MY G+GLAA QIGV R++VI Sbjct: 1 MVRKILTYPDPELKKRSLPVTVITDKTRELVRDMAETMYDAPGVGLAAPQIGVHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + +V INP+II ++ + +EGCLS+P + A+V+R A + V+ ++ + + Sbjct: 61 DVSCKDEKPELIVAINPEII-HAEGEAYEEEGCLSVPKFSANVRRHAKVVVKSLNLDGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +I AD LLA QHE+DHL+G+LFIDHLS LK+ + K+ + ++ Sbjct: 120 VVIRADDLLAIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQRALEE 166 >gi|86137255|ref|ZP_01055833.1| peptide deformylase [Roseobacter sp. MED193] gi|85826579|gb|EAQ46776.1| peptide deformylase [Roseobacter sp. MED193] Length = 168 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L + P+ + D+ LI +M E MY+ G GLAA Q+GVL RL V Sbjct: 1 MALLPILQWPDAGLSTLCTPVGE--EDLTRLIADMFETMYAAPGRGLAAPQVGVLKRLFV 58 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P+V INP+ ++ D EGCLSIP V R +++R+ D + Sbjct: 59 MDATWKEAPGTPLVMINPEFLSVGADLESGDEGCLSIPGVLTSVPRPKTVSLRWQDQDRN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DG A C+QHE DHL G++ ++ L+ R ++ R Sbjct: 119 WTSGSFDGFAARCIQHEYDHLEGLVTLNRLTPAARSEAEATYQNRLETR 167 >gi|326798583|ref|YP_004316402.1| peptide deformylase [Sphingobacterium sp. 21] gi|326549347|gb|ADZ77732.1| Peptide deformylase [Sphingobacterium sp. 21] Length = 190 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 96/173 (55%), Gaps = 6/173 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+L+R + I+K ++ NLI NM E MY+ G+G+AA Q+G+ RL V+ Sbjct: 1 MKLPIVAYGDPVLKRKAIDIDKDYPELENLIANMFETMYAAHGVGIAAPQVGLSIRLFVV 60 Query: 62 DLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D A P VFIN I + + EGCLSIPD R DV R + I +RY Sbjct: 61 DASPFAEDDAPELKDFKKVFINAHIEEEEGEKWEFNEGCLSIPDIREDVSRHSIIHIRYF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D N DGL A +QHE DH+ G LF D LS L++ M+ K+ + + Sbjct: 121 DENWVEHREKYDGLAARVIQHEYDHIEGKLFTDRLSVLRKAMLKSKLDAISKG 173 >gi|255101749|ref|ZP_05330726.1| peptide deformylase 2 [Clostridium difficile QCD-63q42] Length = 146 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 97/152 (63%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +EKI+ I+ L+D+M E MY DG+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + INP+II S + + +EGCLS+ +V+R ++ VR ++ N + Sbjct: 61 IDIGE-----DLIELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA HE+DHL+GILF+D + + Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146 >gi|162147911|ref|YP_001602372.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|209542528|ref|YP_002274757.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|161786488|emb|CAP56070.1| Peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|209530205|gb|ACI50142.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] Length = 179 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+++ P ILR+ +RP+ ++ + + + M MY GIGLAA Q+G+ R ++DL Sbjct: 14 PILVAPQAILRQKARPVRPEDAAGVRDALPRMFAAMYQAPGIGLAAPQVGMGLRFAIVDL 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + R+ P++ INP +I SD + +EGCLS+P+ A+V R + VRY + + Sbjct: 74 GEEGERQ-PLILINPDVIAESDSLASREEGCLSLPNQYAEVIRPDRVRVRYRTLDGTEEE 132 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K + + Sbjct: 133 LEADGLLATCIQHEIDHLEGILFVDHLSTLKRNMIMRRLAKEQRQK 178 >gi|159037484|ref|YP_001536737.1| peptide deformylase [Salinispora arenicola CNS-205] gi|157916319|gb|ABV97746.1| peptide deformylase [Salinispora arenicola CNS-205] Length = 186 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ L+ ++ + M +G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLTDTMREQNGAGLAAPQLGVGLRVFA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D +NP + + EGCLS+P D KR + R + + Sbjct: 61 FDVDDVIG-----HLVNPVLEFPDVEEQDGPEGCLSLPGLYFDTKRRQNVVARGFNGHGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I GL+A C+QHE DHL+G+LFID L R K + + Sbjct: 116 PVQIVGTGLMARCVQHETDHLDGVLFIDRLDAAGRKEAMKAIRQAQW 162 >gi|126700204|ref|YP_001089101.1| peptide deformylase 2 [Clostridium difficile 630] gi|254976176|ref|ZP_05272648.1| peptide deformylase 2 [Clostridium difficile QCD-66c26] gi|255093565|ref|ZP_05323043.1| peptide deformylase 2 [Clostridium difficile CIP 107932] gi|255307617|ref|ZP_05351788.1| peptide deformylase 2 [Clostridium difficile ATCC 43255] gi|255315309|ref|ZP_05356892.1| peptide deformylase 2 [Clostridium difficile QCD-76w55] gi|255517977|ref|ZP_05385653.1| peptide deformylase 2 [Clostridium difficile QCD-97b34] gi|255651093|ref|ZP_05397995.1| peptide deformylase 2 [Clostridium difficile QCD-37x79] gi|260684158|ref|YP_003215443.1| peptide deformylase 2 [Clostridium difficile CD196] gi|260687817|ref|YP_003218951.1| peptide deformylase 2 [Clostridium difficile R20291] gi|115251641|emb|CAJ69474.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2 ) [Clostridium difficile] gi|260210321|emb|CBA64646.1| peptide deformylase 2 [Clostridium difficile CD196] gi|260213834|emb|CBE05821.1| peptide deformylase 2 [Clostridium difficile R20291] Length = 146 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 96/152 (63%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +EKI+ I+ L+D+M E MY DG+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II S + + +EGCLS+ +V+R ++ VR ++ N + Sbjct: 61 IDIGE-----ELIELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA HE+DHL+GILF+D + + Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146 >gi|24374073|ref|NP_718116.1| peptide deformylase [Shewanella oneidensis MR-1] gi|32363156|sp|Q8EE60|DEF3_SHEON RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName: Full=Polypeptide deformylase 3 gi|24348554|gb|AAN55560.1|AE015695_2 polypeptide deformylase [Shewanella oneidensis MR-1] Length = 163 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I I ID+++E MY TD GIGLA+ Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R P+V +NP+I+ S ++ V +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSET--RDQPLVLVNPEIVEKSGEY-VGEEGCLSIPGYRAKVTRFEKVKVTALDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRKYA 163 >gi|325280501|ref|YP_004253043.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] gi|324312310|gb|ADY32863.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] Length = 184 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 5/170 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V++ PILR++S I ++ I ++ + M DG+GLAA Q+G R+ V+D Sbjct: 4 PIVVYGHPILRKISEDITPEYPELDKFIRDLFQTMDEADGVGLAAPQVGRNIRIFVVDAN 63 Query: 65 -----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + FIN I+ D EGC+SIP DVKR I + YMD Sbjct: 64 AFEEMDPDCKGFRKAFINAHILERWGDEISRNEGCISIPGIHEDVKRPNCIRISYMDEQG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q G+ A +QHE DHL GILF DHLS LK+ ++ K++ + + Sbjct: 124 QEHEEEFCGIKAWIIQHEYDHLEGILFTDHLSALKKRILKNKLNNISTGK 173 >gi|237817222|ref|ZP_04596214.1| peptide deformylase [Brucella abortus str. 2308 A] gi|297249721|ref|ZP_06933422.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196] gi|237788035|gb|EEP62251.1| peptide deformylase [Brucella abortus str. 2308 A] gi|297173590|gb|EFH32954.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196] gi|326410617|gb|ADZ67681.1| peptide deformylase [Brucella melitensis M28] gi|326553909|gb|ADZ88548.1| peptide deformylase [Brucella melitensis M5-90] Length = 214 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 51 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 111 LELDRAAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 214 >gi|157737933|ref|YP_001490617.1| peptide deformylase [Arcobacter butzleri RM4018] gi|157699787|gb|ABV67947.1| polypeptide deformylase [Arcobacter butzleri RM4018] Length = 171 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 107/172 (62%), Gaps = 4/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ +LR S+ +EK ++++ L+D+M E M + +G+GLAA+Q+ V ++VI Sbjct: 1 MVREVITYPNKLLRLKSKDVEKFDNELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVI 60 Query: 62 DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L +D + + + INP I T D V+ EGCLS+P + DV R+ I V Y + Sbjct: 61 NLPNEEDIQDKNDLIEAINPVI-THKDGTQVFTEGCLSVPGFSEDVTRAEHIIVEYFNRF 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + Q + ++G LA QHE++HL+G LFI++LS +KR K+ K ++ ++ Sbjct: 120 GEKQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKKRLKDKN 171 >gi|86604850|ref|YP_473613.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] gi|86553392|gb|ABC98350.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] Length = 198 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ ++ + ++N +I L +ML+ MYS DGIGLAA Q+G+ RL+V+DL Sbjct: 19 IHRMGDKVLRQPAKRVSQVNDEIRQLARHMLQTMYSADGIGLAAPQVGIPKRLIVVDLYP 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+V INP+I + + QEGCLSIP +V R + V + D + + + Sbjct: 79 DKPEVPPLVLINPEIREYLGEVVAGQEGCLSIPGVFCEVMRPQGVVVSFKDETGRPRTLQ 138 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA +QHE+DHLNG+LF+DH+ ++ +++ K Sbjct: 139 ADDLLARVIQHEIDHLNGVLFVDHVENE--LLLDQELRKH 176 >gi|328952875|ref|YP_004370209.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109] gi|328453199|gb|AEB09028.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109] Length = 167 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +P+ +L+ + P+ +I DI LID+M MY+ GIGLAA Q+G L R+++ Sbjct: 1 MAILEIQTYPESVLKEKALPVTEITEDIQRLIDDMAATMYNAPGIGLAANQVGALQRVII 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + V INP+II VYQE CLS+ DY ADV+R A + +D N + Sbjct: 61 FDITPKNEGRKLNVLINPEIIAAEGA-QVYQEACLSVLDYAADVRRKARVLATGLDRNGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 I A+ LLA LQHE+DHL+GILFID +SRLKR++ Sbjct: 120 EVRIEAEDLLAVVLQHEIDHLDGILFIDRISRLKRNL 156 >gi|329890845|ref|ZP_08269188.1| peptide deformylase [Brevundimonas diminuta ATCC 11568] gi|328846146|gb|EGF95710.1| peptide deformylase [Brevundimonas diminuta ATCC 11568] Length = 190 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 78/188 (41%), Positives = 109/188 (57%), Gaps = 20/188 (10%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M + ++ + IL+ V+ P+E + + L+D+MLE MY GIGLAA QIG L Sbjct: 1 MAIRRILTIDNAADLAILKTVAAPVEGGVTDAVRALMDDMLETMYDAPGIGLAAPQIGEL 60 Query: 56 YRLVVIDLQDHA---------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 R+VV+DL D R+NP F+NP+I+ S++ Y+EGCLS+P Y Sbjct: 61 TRVVVMDLGDKPVEGASDEPQTEEEALERRNPRFFVNPEILWSSEEMFSYEEGCLSVPTY 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 V+R A + VRYM+ + +GL A C QHELDHLNG+LFIDHLSRL+RD Sbjct: 121 YDSVERPARVRVRYMNYQGETIEEEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRAVS 180 Query: 161 KMSKLVQL 168 K+ K ++ Sbjct: 181 KVKKHARM 188 >gi|315637680|ref|ZP_07892885.1| peptide deformylase [Arcobacter butzleri JV22] gi|315478027|gb|EFU68755.1| peptide deformylase [Arcobacter butzleri JV22] Length = 171 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 61/171 (35%), Positives = 106/171 (61%), Gaps = 4/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ +LR S+ +EK +S++ L+D+M E M + +G+GLAA+Q+ V ++VI Sbjct: 1 MVREVITYPNKLLRLKSKDVEKFDSELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVI 60 Query: 62 DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L +D + + + INP I T D V+ EGCLS+P + DV R+ I V Y + Sbjct: 61 NLPNEEDVQDKNDLIEAINPVI-THKDGTQVFTEGCLSVPGFSEDVTRAEHIVVEYFNRF 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q + ++G LA QHE++HL+G LFI++LS +KR K+ K ++ + Sbjct: 120 GEKQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKKRLKDK 170 >gi|260774331|ref|ZP_05883246.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] gi|260611292|gb|EEX36496.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] Length = 171 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 110/168 (65%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + ++ I + LID+MLE +YST +GIGLA+VQ+G +V Sbjct: 1 MAVLEILTAPDPRLKITAEKVQDI-ESVQKLIDDMLETLYSTDNGIGLASVQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL D +R P++ INP++++ S+ ++ QEGCLS+PDY A+V+R + V +D Sbjct: 60 IIDLSD--NRDQPLILINPEVVSGSN-KALGQEGCLSVPDYYAEVERYTSVVVSALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q I +D LA +QHE+DHL+G LFID++S LKR M KK+ K V+ Sbjct: 117 QRITIESDDFLAIVMQHEIDHLSGNLFIDYISPLKRQMAMKKVKKYVK 164 >gi|89074343|ref|ZP_01160825.1| peptide deformylase [Photobacterium sp. SKA34] gi|89049830|gb|EAR55371.1| peptide deformylase [Photobacterium sp. SKA34] Length = 170 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 75/171 (43%), Positives = 105/171 (61%), Gaps = 5/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58 M ++ P+P LR + + + ++ I LID+ML MY T +GIGLAA Q+G + Sbjct: 1 MAVLEILTEPNPKLRVQAEDVADVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESI 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +VIDL + R P VF+NPKI+ ++ V QEGCLS+PDY ADV+R I + +D + Sbjct: 61 IVIDLSE--ERNEPHVFVNPKIV-RGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D LA LQHE+DHL GILFID+LS LKR M KK+ K ++ + Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLKAQ 168 >gi|325852042|ref|ZP_08171125.1| peptide deformylase [Prevotella denticola CRIS 18C-A] gi|325484598|gb|EGC87514.1| peptide deformylase [Prevotella denticola CRIS 18C-A] Length = 214 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVI Sbjct: 29 MVLPIYTYGQPVLRKVAADIPLDYPDLQELIRNMFETNTASDGVGLAAPQIGKSIRVVVI 88 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL ++ FIN I+ D + +EGCLS+P V R+ I V+Y+ Sbjct: 89 DLDVLSDTFPEYKDFRHAFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVKYL 148 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + DG LA +QHE DHL+G +F DHLS +R MI+ K+ L+Q + Sbjct: 149 DENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQGK 202 >gi|260574965|ref|ZP_05842967.1| peptide deformylase [Rhodobacter sp. SW2] gi|259022970|gb|EEW26264.1| peptide deformylase [Rhodobacter sp. SW2] Length = 163 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 1/150 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L P+ +D+ L +ML MY+ G GLAA QIG+L R+ V Sbjct: 1 MPVLPILCWPDARLATPCDPVAP-GADLRALAADMLATMYAATGRGLAAPQIGILQRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R P V +NP+I+ S+ EGCLS+P D+ R A I +R+ D + Sbjct: 60 MDTGWKEGRPAPQVLVNPEILWRSEACKTVAEGCLSLPGISPDISRPAEIRLRWRDLDGT 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + G ATC QHE+DHL+GIL +DHL Sbjct: 120 PHEAHLTGFAATCAQHEIDHLDGILTLDHL 149 >gi|315639061|ref|ZP_07894229.1| peptide deformylase [Campylobacter upsaliensis JV21] gi|315480837|gb|EFU71473.1| peptide deformylase [Campylobacter upsaliensis JV21] Length = 177 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 103/171 (60%), Gaps = 3/171 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ L S P+EK + ++ L+D+M E M S+ G+GLAA+Q+ V R+ ++ Sbjct: 1 MVRKIITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRVFIV 60 Query: 62 DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D +++ + INP I +D+ V EGCLS+PD+ +V+R IT++Y + Sbjct: 61 NIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRHRKITLKYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + + A+ LA +QHE DHL+G LFI+ L KR+ +K+ K + + Sbjct: 121 GKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKEFKKQRKSK 171 >gi|56750222|ref|YP_170923.1| peptide deformylase [Synechococcus elongatus PCC 6301] gi|81300149|ref|YP_400357.1| peptide deformylase [Synechococcus elongatus PCC 7942] gi|56685181|dbj|BAD78403.1| polypeptide deformylase [Synechococcus elongatus PCC 6301] gi|81169030|gb|ABB57370.1| peptide deformylase [Synechococcus elongatus PCC 7942] Length = 192 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 66/143 (46%), Positives = 93/143 (65%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ + +I+ ++ I ML+ MYS DGIGLAA Q+G+ +L+VIDL+ Sbjct: 24 LGDRVLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLELEDE 83 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P+V INPKI + D QEGCLSIP DV+R + V Y D N + Q + ADG Sbjct: 84 QAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADG 143 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA C+QHE+DHLNG+LF+D + Sbjct: 144 LLARCIQHEMDHLNGVLFVDRVE 166 >gi|253575776|ref|ZP_04853111.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844819|gb|EES72832.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] Length = 160 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PD +L +V++ ++KI +I L+ +M + MY +G+GLAA QIG+L R++V Sbjct: 1 MAIRIIVKEPDEVLHQVAKEVKKITPNIQKLLTDMADTMYDAEGVGLAAPQIGILKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP+I++ + EGCLSIP YR DV+R+ +TV+ +D N Sbjct: 61 VDVGD---EHGLIELINPEIVSKEGE-QFGPEGCLSIPGYRGDVRRAMTVTVKGLDRNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 LLA QHE+DHLNG+L+ D R+ Sbjct: 117 EVTYTGSELLARAFQHEIDHLNGVLYTDIAERV 149 >gi|271966900|ref|YP_003341096.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270510075|gb|ACZ88353.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 182 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 6/172 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ +P+L R + + + D+ L+ +M MY+ +G+GLAA QIG+ R+ V Sbjct: 8 TARPITFVGEPVLHRPCETVTRFDDDLAMLVADMFASMYAAEGVGLAANQIGIGLRVFVY 67 Query: 62 DLQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D V +NP ++ + Y EGCLS+P RA + R V D Sbjct: 68 DCPDETEEFRKGVVVNPTLVMPGPDEEHLDDYAEGCLSVPGQRASLARPDRAVVHGFDVT 127 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + GLLA CLQHE DHL G L+ID L +R+ + ++ Q RD Sbjct: 128 GAPVTVEGTGLLARCLQHETDHLEGRLYIDRLPAERREQV---LAAYEQERD 176 >gi|283778512|ref|YP_003369267.1| peptide deformylase [Pirellula staleyi DSM 6068] gi|283436965|gb|ADB15407.1| peptide deformylase [Pirellula staleyi DSM 6068] Length = 222 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 1/164 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P P LR+V++PI+++++++ ++ M ++MY GIGLAA Q+ + RL VI Sbjct: 29 TRLQIITYPHPTLRKVAKPIKRVDAELRAMVAQMFDLMYEAKGIGLAANQVDLPLRLFVI 88 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 +L + +VFINP + + + +EGCLS+P V R + V + Q Sbjct: 89 NLTAEKGKGEELVFINPVL-SHPKGSAEAEEGCLSLPGVYGQVVRPKTVQVNAYNLQGQE 147 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GLLA C+QHE DHL+G++F D +S R + ++ + Sbjct: 148 ISAEVGGLLARCIQHENDHLDGVMFPDRMSESSRVELGGELQEF 191 >gi|160880624|ref|YP_001559592.1| peptide deformylase [Clostridium phytofermentans ISDg] gi|189083068|sp|A9KM99|DEF_CLOPH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|160429290|gb|ABX42853.1| peptide deformylase [Clostridium phytofermentans ISDg] Length = 163 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 91/151 (60%), Gaps = 3/151 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ + I D IL + S+ IE++ I LID+ML+ MY G+GLAA Q+GVL RLVV Sbjct: 1 MAKRNIRIMGDSILNKTSKVIEEVTPKIDTLIDDMLDTMYDAGGVGLAAPQVGVLKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ P++ INP+II+ + EGCLS+P V R ++ V+ D + + Sbjct: 61 IDVS--LEGNEPIILINPEIISTDGE-QTGDEGCLSLPGKAGIVTRPNYVKVKAYDRHMK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA HE+DHL+GIL+++ ++ Sbjct: 118 PFEVEGEGLLARAFCHEIDHLDGILYVEKVN 148 >gi|302386506|ref|YP_003822328.1| peptide deformylase [Clostridium saccharolyticum WM1] gi|302197134|gb|ADL04705.1| peptide deformylase [Clostridium saccharolyticum WM1] Length = 163 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+ +P+++I I L+++M E MY ++G+GLAA Q+GVL ++VV Sbjct: 1 MAIRKIRTIGDEILRKQCKPVKEITPRITELVEDMFETMYDSNGVGLAASQVGVLKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D N V INP+I+ EGCLS+P V R ++ ++ D + + Sbjct: 61 IDVED----GNQYVLINPEILETRGS-QTGPEGCLSVPGKSGTVTRPEYVRIKAYDASME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA + HE DHLNG L++D + Sbjct: 116 PYELEGEGLLARAICHECDHLNGDLYVDKVE 146 >gi|28210907|ref|NP_781851.1| peptide deformylase [Clostridium tetani E88] gi|39930881|sp|Q895Q2|DEF_CLOTE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28203346|gb|AAO35788.1| polypeptide deformylase [Clostridium tetani E88] Length = 150 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 96/154 (62%), Gaps = 6/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L D +LR+ SR +EKI+ I L+D+ML+ MY +G+GLAA Q+G+L R+VV Sbjct: 1 MAIRNLRFLGDELLRKKSRRVEKIDDRIQALLDDMLDTMYENNGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+II + + QEGCLS+P + +V+R + V+ + + + Sbjct: 61 IDIGE-----GPLFLINPEIIEQEGSY-IEQEGCLSVPGRQGEVERPYRVKVKAQNRDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I+ + LA L HE+DHLNG+LF+D + +K Sbjct: 115 EIIVEGEEFLAKALCHEIDHLNGVLFVDKIIDVK 148 >gi|300781120|ref|ZP_07090974.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] gi|300532827|gb|EFK53888.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] Length = 176 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 5/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ IF DP+L + I+ + + L+ +MLE M + G+GLAA QIG+ R+ V Sbjct: 1 MTVRPIRIFGDPVLNSEATRIDTFDEALRTLVSDMLETMDAAGGVGLAANQIGLTKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP D + EGCLSIP +A+V+R + R D + Sbjct: 61 YDCNGMRG-----ALINPVWEPIDDYVQIGPEGCLSIPGIQAEVERHENVIARGQDEFGR 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I +GLLA C+QHE DHL+G+LF+ L R Sbjct: 116 PVAIRGNGLLARCIQHETDHLDGVLFLRRLEPEVRKEAM 154 >gi|291443077|ref|ZP_06582467.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291346024|gb|EFE72928.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] Length = 205 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 71/149 (47%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + DP+L R + + LI++M MY+ G+GLAA QIGV ++ V D Sbjct: 37 VREMSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYD 96 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + + Sbjct: 97 CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPV 156 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 I G A CLQHE DHL G ++ D L+ Sbjct: 157 RIAGTGWFARCLQHECDHLEGTVYPDRLT 185 >gi|239982203|ref|ZP_04704727.1| polypeptide deformylase [Streptomyces albus J1074] gi|291454049|ref|ZP_06593439.1| polypeptide deformylase [Streptomyces albus J1074] gi|291356998|gb|EFE83900.1| polypeptide deformylase [Streptomyces albus J1074] Length = 218 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L R ++ + ++++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 42 TARPITVVGNPVLHRETKDVTVFDAELAQLVDDMFASQRAAEGVGLAANQIGVDKKVFVY 101 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + + V EGCLS+P A++ R + VR D Sbjct: 102 DCPDDEGARHVGVVCNPVLDELPSERRVLDDSNEGCLSVPTAYAELARPDYAVVRGQDEK 161 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 162 GNPIVVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 207 >gi|150025801|ref|YP_001296627.1| peptide deformylase [Flavobacterium psychrophilum JIP02/86] gi|158513727|sp|A6H0E7|DEF_FLAPJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149772342|emb|CAL43820.1| Peptide deformylase [Flavobacterium psychrophilum JIP02/86] Length = 194 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+V I K ++ I NM E MY+ G+GLAA Q+G+ RL ++ Sbjct: 1 MILPIVGYGDPVLRKVCEEITKDYINLEETIANMYETMYNACGVGLAAPQVGLPIRLFIV 60 Query: 62 DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + FIN K++ + + EGCLSIPD R DV R+ Sbjct: 61 DADPFSDSDDISKEEAAALKGFKKTFINAKMLKEEGEEWSFSEGCLSIPDVREDVYRNPN 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D N + +GL+A +QHE DH+ G+LF D ++ K+ I KK+ +++ + Sbjct: 121 ITIEYYDENFNKKTEEYNGLIARVIQHEYDHIEGVLFTDKITVFKKQFIKKKLQNIMEGK 180 >gi|313157241|gb|EFR56671.1| peptide deformylase [Alistipes sp. HGB5] Length = 181 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 5/159 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+VI+ + +LR+ I ++ L+++M + + +G+GLAA QIG RL ++ Sbjct: 1 MIYPIVIYGNEVLRKQCEEIAPDYPEVKKLVEDMFQTLGEAEGVGLAAPQIGKAIRLFIV 60 Query: 62 DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D FINP+I FS++ Y EGCLS P ADV RS I +RY+D Sbjct: 61 DCTPWGEDDPECADYKRAFINPEIYAFSEEKKTYNEGCLSFPGIHADVPRSLAIRMRYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 N GL A +QHE DH+ G++F D +S L+R Sbjct: 121 ENFVEHDEEFHGLKAWVIQHEYDHIEGVVFTDRISPLRR 159 >gi|329926582|ref|ZP_08280995.1| peptide deformylase [Paenibacillus sp. HGF5] gi|328939123|gb|EGG35486.1| peptide deformylase [Paenibacillus sp. HGF5] Length = 164 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PD +L + ++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+V Sbjct: 1 MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D + INP+I+ S+ EGCLSIP + DV+R+ +TV+ +D Sbjct: 61 IDAGD---EHGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +I GLLA QHE+DHLNG+LF + R+ Sbjct: 117 ELVITGTGLLARAFQHEIDHLNGVLFTEIADRV 149 >gi|134094837|ref|YP_001099912.1| peptide deformylase [Herminiimonas arsenicoxydans] gi|133738740|emb|CAL61787.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas arsenicoxydans] Length = 177 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 64/164 (39%), Positives = 107/164 (65%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PD L +V++ + ++++ I L+++M + MY+ DGIGLAA Q+ V R+++ Sbjct: 1 MSKLAILQYPDERLHKVAQAVTQVDAGIRRLVEDMAQTMYAADGIGLAATQVNVHLRVIL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + R +V INP++I + +EGCLS+PD VKR+A+I +R +D N + Sbjct: 61 VDISE--DRSQLLVMINPEVIKM-GGSAECEEGCLSVPDVYEKVKRAAWIRLRALDINGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGL A C+QHELDHL G++F++HLS L + I ++K Sbjct: 118 PFEVQADGLKAMCIQHELDHLQGMVFVEHLSPLNQARILSTLAK 161 >gi|56417231|ref|YP_154305.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. St. Maries] gi|222475595|ref|YP_002564012.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Florida] gi|254995399|ref|ZP_05277589.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Mississippi] gi|255003586|ref|ZP_05278550.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Puerto Rico] gi|255004717|ref|ZP_05279518.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Virginia] gi|56388463|gb|AAV87050.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. St. Maries] gi|222419733|gb|ACM49756.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Florida] Length = 185 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 17/184 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M PL+ PD L S + + L +NMLE MY GIGLAAVQ+GV R+ Sbjct: 1 MAVLPLLTLPDSRLSLCSEEVHAADFGPQLETLTNNMLETMYHNKGIGLAAVQVGVHKRI 60 Query: 59 VVIDLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 V+DL+ ++ P+V +NP ++ S+ + +EGCLS+P YR Sbjct: 61 CVVDLEYGSDRYEIPEDDGVGEYRATCGPVVILNPIVVEESEQLATMEEGCLSVPGYRET 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V+R I V+Y D N Q + I A GLLA CLQHELDHLNG++F+ +S+LKRDM+ +K+ Sbjct: 121 VQRPERIVVQYTDLNRQTKYIKACGLLARCLQHELDHLNGVVFLQRVSKLKRDMVMEKIR 180 Query: 164 KLVQ 167 K + Sbjct: 181 KASK 184 >gi|126463294|ref|YP_001044408.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|126104958|gb|ABN77636.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] Length = 167 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++PD L+ V+ P+E + +I + +M+E M + G GLAA QIGV+ RL V+ Sbjct: 1 MIRPFVMYPDKRLKTVAAPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + + NP+I+ S F ++EG ++P A V R +TVR+++ + Sbjct: 61 DCSESRGKA--IRLANPEILHASGQFREHEEGSPNLPGASAVVSRPRAVTVRFLNEAGET 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + AT +QH++DHL+G L+ID LS LKR M+ K K ++ Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164 >gi|332876937|ref|ZP_08444690.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685045|gb|EGJ57889.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 192 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 94/180 (52%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+V+ I ++ LI NM + M G+GLAA QIG+ RL V+ Sbjct: 1 MVLPIIAYGDPVLRKVATDISPDYPNLNTLIANMYDTMNYAYGVGLAAPQIGLPIRLFVV 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + FIN KI + D ++ EGCLSIP R DV R Sbjct: 61 DTAPFADDDDLTEEERTFLSNFKKTFINAKITEETGDKWLFNEGCLSIPGVREDVSRQKQ 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ ++D Q + GL A +QHE DH+ GILF D LS K+ +I K++ + + + Sbjct: 121 ITIEFVDEQFTPQRLTLTGLAARVVQHEYDHIEGILFTDKLSSFKKQLIKGKLTNISKGK 180 >gi|224373737|ref|YP_002608109.1| peptide deformylase [Nautilia profundicola AmH] gi|254767597|sp|B9L6X1|DEF_NAUPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|223589661|gb|ACM93397.1| peptide deformylase [Nautilia profundicola AmH] Length = 174 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 102/165 (61%), Gaps = 4/165 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P+ +L+++S+P+E+ + D+ L+D+M E M +G+GLAA+Q+ V R ++ Sbjct: 1 MAVLDIVTYPNKVLKQISKPVERFDKDLHKLLDDMYETMIKNNGVGLAAIQVAVPIRALL 60 Query: 61 IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ID+ D +++ + INP+ +T+ D EGCLS+PDY +V+R + V++ D Sbjct: 61 IDIGDEEGKQSKDTLIEVINPEFLTW-DGTQKDTEGCLSVPDYFDEVERYKNVKVKFFDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + ++ A+GLL+ QHE DHL+G LF++ L +KR K+ Sbjct: 120 FGKEHVMEAEGLLSVAFQHETDHLDGHLFVERLDYIKRKKFEKEW 164 >gi|197117031|ref|YP_002137458.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] gi|197086391|gb|ACH37662.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] Length = 172 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP L++ S P+ I L +M E MY G+GLAA QIGV R++VI Sbjct: 1 MIRTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ +V INP+I+ ++ + +EGCLS+P + A+V+R A I V+ ++ + Sbjct: 61 DVSGKDETPELIVAINPEIV-HAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLEGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 AD LL+ QHE+DHL+G+LFIDHLS LK+ + K+ + + Sbjct: 120 VTFRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQRAL 164 >gi|296133300|ref|YP_003640547.1| peptide deformylase [Thermincola sp. JR] gi|296031878|gb|ADG82646.1| peptide deformylase [Thermincola potens JR] Length = 150 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 88/156 (56%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V DPIL+ RP+ KI +I+ L+D+M + MY +G+GLAA QIGV R++V Sbjct: 1 MAVYKIVEIGDPILKEKCRPVNKITPNIIKLLDDMADTMYDANGVGLAAPQIGVGKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + +NP+I+ + EGCLSIP + V R A + VR M+ Sbjct: 61 VDVGD-----GLIELVNPEIV-HREGSETDVEGCLSIPGIQGQVPRYAKVRVRGMNREGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 A+GLLA QHE+DHL GILFID + + Sbjct: 115 RVEYEAEGLLARAFQHEIDHLEGILFIDRAKEIIKK 150 >gi|90579699|ref|ZP_01235508.1| peptide deformylase [Vibrio angustum S14] gi|90439273|gb|EAS64455.1| peptide deformylase [Vibrio angustum S14] Length = 170 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 75/171 (43%), Positives = 105/171 (61%), Gaps = 5/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58 M ++ P+P LR + + + ++ I LID+ML MY T +GIGLAA Q+G + Sbjct: 1 MAVLEILTEPNPKLRVQAEDVVDVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESI 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +VIDL + R P VF+NPKI+ ++ V QEGCLS+PDY ADV+R I + +D + Sbjct: 61 IVIDLSE--ERNEPQVFVNPKIV-RGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D LA LQHE+DHL GILFID+LS LKR M KK+ K ++ + Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLKAQ 168 >gi|283797831|ref|ZP_06346984.1| peptide deformylase [Clostridium sp. M62/1] gi|291074519|gb|EFE11883.1| peptide deformylase [Clostridium sp. M62/1] gi|295091956|emb|CBK78063.1| peptide deformylase [Clostridium cf. saccharolyticum K10] Length = 159 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+ +P++++ LI++M + MY +G+GLAAVQ+GV ++VV Sbjct: 1 MAIREIRTIGDEILRKECKPVKEMTPHTAELIEDMFDTMYEANGVGLAAVQVGVRKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D N V INP+I+ S EGCLS+P V R ++ V+ ++ + Sbjct: 61 IDVED----GNQYVLINPEILETSGS-QTGPEGCLSVPGKSGTVTRPDYVKVKALNEKME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ +GLLA + HE DHL G+L++D + Sbjct: 116 EFVLEGEGLLARAICHECDHLYGVLYVDKVE 146 >gi|322421893|ref|YP_004201116.1| peptide deformylase [Geobacter sp. M18] gi|320128280|gb|ADW15840.1| peptide deformylase [Geobacter sp. M18] Length = 168 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 110/169 (65%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M KP+V +PDPIL++V P++ I+ +I L++++++ M++ G +G+AA Q+GV R+ Sbjct: 1 MAVKPIVTYPDPILKQVCPPVQAIDVEIRQLVEDLVDTMHAGPGSVGVAAPQVGVARRVC 60 Query: 60 VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 VID+ + H K ++ INP+I+ S +V +EGC+S+PDY DV+R+ +T+R+ Sbjct: 61 VIDVSKNRHGKENNHGLLLMINPEILAKSGA-AVMREGCMSVPDYTGDVERATELTLRFT 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + A G A +QHE+DHL+G+LF+D ++ LK + +K K Sbjct: 120 EPDGGVREFEASGFEAVAIQHEMDHLDGLLFLDRIASLKTGLFRRKSYK 168 >gi|167623826|ref|YP_001674120.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] gi|167353848|gb|ABZ76461.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] Length = 163 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 72/165 (43%), Positives = 100/165 (60%), Gaps = 5/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD L+R + P+ I + ID+++E MY TD GIGLAA Q+G L+ ++ Sbjct: 1 MAVLDILTIPDERLKRKAVPVTDI-ESVQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D R PMV INP+ + ++ +EGCLSIP YRA V R + V +D + Sbjct: 60 VIDLSD--ERDQPMVLINPEFLESRGEYQ-GEEGCLSIPGYRAKVNRHQGVKVTALDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I D LA LQHE+DHLNG++F DHLS LK+ + KK+ K Sbjct: 117 KAFEIDTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKK 161 >gi|260892750|ref|YP_003238847.1| peptide deformylase [Ammonifex degensii KC4] gi|260864891|gb|ACX51997.1| peptide deformylase [Ammonifex degensii KC4] Length = 154 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 89/156 (57%), Gaps = 9/156 (5%) Query: 1 MVKKPLVIFPD---PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + +V D +LR ++P++KI I LI +M E MY G+GLAA Q+GV R Sbjct: 1 MAVRKIVTLGDSGDKVLREKAQPVDKITPQIQKLIRDMTETMYRAQGVGLAAPQVGVSLR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V+D N INP+I+ + +EGCLSIP +V R+A + VR + Sbjct: 61 VIVVDTG-----SNLYQLINPEIVAREGE-EKGREGCLSIPGVWGEVVRAASVLVRALTP 114 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I ADGLLA LQHE+DHL+GILFID ++ Sbjct: 115 EGREVSIEADGLLARALQHEIDHLDGILFIDRAEKV 150 >gi|260574966|ref|ZP_05842968.1| peptide deformylase [Rhodobacter sp. SW2] gi|259022971|gb|EEW26265.1| peptide deformylase [Rhodobacter sp. SW2] Length = 167 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD L+ V+ P+ +I ++ + +M+E M G+GLAA QIGV+ RL V Sbjct: 1 MTVRRCLPYPDRRLKTVAEPVAEITDEVRAIWADMVETMDDMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R ++ NP+++ S + EG ++P A + R +TVR+++ Q Sbjct: 61 VDCSET--RGQAVLMANPEVLHASGQMREHDEGSPNLPGVSAVISRPRAVTVRFLNAQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + L AT +QH++DHLNG L+IDHLS LKR M+ K K + Sbjct: 119 VEERDFVNLWATSVQHQIDHLNGKLYIDHLSPLKRKMLIAKSQKYL 164 >gi|225574496|ref|ZP_03783106.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM 10507] gi|225038283|gb|EEG48529.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM 10507] Length = 174 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+L + RP+E++N LID+ML+ MY G+GLAA Q+GVL R+VV Sbjct: 16 MALRQIRVEGDPVLTKKCRPVEEMNDRTRQLIDDMLDTMYEAMGVGLAAPQVGVLKRIVV 75 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INPKI+ S + EGCLSIP +V R ++ + N + Sbjct: 76 IDVGE-----GPLVMINPKIVETSGE-QTGDEGCLSIPGMAGEVTRPNYVKAIAFNENME 129 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + LLA + HE DHL+GI++ H++ Sbjct: 130 EFEVEGTELLARAICHECDHLDGIMYTAHVN 160 >gi|124024845|ref|YP_001013961.1| peptide deformylase [Prochlorococcus marinus str. NATL1A] gi|158512738|sp|A2BZN6|DEF_PROM1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123959913|gb|ABM74696.1| putative formylmethionine deformylase [Prochlorococcus marinus str. NATL1A] Length = 202 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 2/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D LR + I K++ I L +ML MYS+ GIGLAA Q+G+ RL+VIDL Sbjct: 33 VYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVIDLNF 92 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 PMVFINP+II+ S Y+EGCLSIP +V R + I + Y D + + + Sbjct: 93 EDPNSPPMVFINPEIISSSATVDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKKMN 152 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGL+A C+QHE+DHLNG+ F+D ++ + + K++++ Sbjct: 153 ADGLMARCIQHEIDHLNGVCFVDKVTDE--EELKKQLNE 189 >gi|261405798|ref|YP_003242039.1| peptide deformylase [Paenibacillus sp. Y412MC10] gi|261282261|gb|ACX64232.1| peptide deformylase [Paenibacillus sp. Y412MC10] Length = 164 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PD +L + ++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+V Sbjct: 1 MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D + INP+I+ S+ EGCLSIP + DV+R+ +TV+ +D Sbjct: 61 IDAGD---EHGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +I GLLA QHE+DHLNG+LF + R+ Sbjct: 117 ELVITGTGLLARAFQHEIDHLNGVLFTEIADRV 149 >gi|170078943|ref|YP_001735581.1| peptide deformylase [Synechococcus sp. PCC 7002] gi|238689048|sp|B1XJP0|DEF_SYNP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169886612|gb|ACB00326.1| peptide deformylase [Synechococcus sp. PCC 7002] Length = 187 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 61/143 (42%), Positives = 86/143 (60%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I K++ +I L ML+ MYS+ GIGLAA Q+GV RL+VID Sbjct: 22 LGDKVLRQKAKRIAKVDDEIRTLAKEMLQTMYSSQGIGLAAPQVGVNKRLIVIDTDPENP 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+V INP+I F ++EGCLSIP DV R I V Y D + + I A G Sbjct: 82 ANAPLVLINPEIKKFGQQLCPFEEGCLSIPGVHLDVIRPDEIEVSYRDEQGKPKRIKASG 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LL+ +QHE+DHL+G++F+D + Sbjct: 142 LLSRVIQHEIDHLDGVMFVDRVE 164 >gi|123967617|ref|YP_001008475.1| peptide deformylase [Prochlorococcus marinus str. AS9601] gi|158513947|sp|A2BNK7|DEF_PROMS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123197727|gb|ABM69368.1| putative formylmethionine deformylase [Prochlorococcus marinus str. AS9601] Length = 201 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ S+ I K++ I L ML+ MY+ GIGLAA QIG+ L+VID+ Sbjct: 32 DIYKLGDDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDVN 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INP+I F + Y+EGCLSIP +V R + I +++ D + + + Sbjct: 92 FEDSAAEPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGILF+D ++ +D + K++ K Sbjct: 152 KADGLLARCIQHEMDHLNGILFVDRVTS--KDDLNKELLK 189 >gi|294141147|ref|YP_003557125.1| polypeptide deformylase [Shewanella violacea DSS12] gi|293327616|dbj|BAJ02347.1| polypeptide deformylase [Shewanella violacea DSS12] Length = 163 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 77/167 (46%), Positives = 106/167 (63%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PD L+R +R +E I+S + ID++LE +Y T DGIGLAA Q+G + ++ Sbjct: 1 MAVLDILTIPDERLKRKARTVEDIDS-VQGFIDDLLETLYDTEDGIGLAATQVGSEHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R P V INP+I+ DF + +EGCLSIP YRA V RS +TV+ +D Sbjct: 60 VIDLSE--ERDQPQVLINPEIVATQGDF-IGEEGCLSIPGYRAKVARSEQVTVKALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL GI+F DHLS+LK+ + KK+ K V Sbjct: 117 KPFEIETDTFLAIVLQHEMDHLQGIVFTDHLSKLKQQIALKKVKKYV 163 >gi|302866831|ref|YP_003835468.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315503246|ref|YP_004082133.1| peptide deformylase [Micromonospora sp. L5] gi|302569690|gb|ADL45892.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315409865|gb|ADU07982.1| peptide deformylase [Micromonospora sp. L5] Length = 186 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ ++++ LI ++ + M G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDAELRKLIADLTDTMREQSGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D +NP + + EGCLSIP D KR + + + Sbjct: 61 FDVDDVLG-----HLVNPVLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVIAKGFNGYGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I GL+A C+QHE DHL+G+LF+D L R K + + Sbjct: 116 PLQIVGTGLMARCVQHETDHLDGVLFVDRLDAAGRKEAMKAIRQAEW 162 >gi|254302996|ref|ZP_04970354.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323188|gb|EDK88438.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 174 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 101/169 (59%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ Sbjct: 1 MVYEIKKYGEDVLKQIAKEVEINEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D + RK INP I+ +++ ++EGCLS+P V+R + ++Y++ Sbjct: 61 VCDDGNGVVRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILF++ +S + + +I KK++ + + Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANMKKE 165 >gi|89895440|ref|YP_518927.1| hypothetical protein DSY2694 [Desulfitobacterium hafniense Y51] gi|123091730|sp|Q24U09|DEF_DESHY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|89334888|dbj|BAE84483.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 150 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +LR + P+++I +I L+DNML+ +Y +G+GLAA Q+GV R+VV Sbjct: 1 MAIYQIVEIGSEVLREKAVPVKEITPNIEKLLDNMLDTLYDANGVGLAAPQVGVSKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP II + + EGCLSIP V R+A + V ++ + Sbjct: 61 IDVGE-----GPIELINPVIIAKEGE-DLDDEGCLSIPGITGQVARAAKVKVEALNRQGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 Q+I +GLLA CLQHE+DHL GILF+D + +R Sbjct: 115 LQVIEGEGLLARCLQHEIDHLEGILFVDKAKKTQRR 150 >gi|302037138|ref|YP_003797460.1| peptide deformylase [Candidatus Nitrospira defluvii] gi|300605202|emb|CBK41535.1| Peptide deformylase [Candidatus Nitrospira defluvii] Length = 176 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 81/167 (48%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + +PILR+ + P+ + LID+M E MY GIGLAA Q+G + Sbjct: 1 MAILAISKLGNPILRQKAVPLTPAEIKKASFQQLIDDMFETMYDEPGIGLAAPQVGRSQQ 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 LVV+D V INP I + + EGCLS+ R V R + + V +D Sbjct: 61 LVVMDCPGEGGFP-KTVLINPTIQFYGPEQVEGWEGCLSVDGLRGKVTRPSTVRVTGLDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 NA+ A GL A C+QHELDHL G LFID ++ + K Sbjct: 120 NAKPFDFEASGLYAVCIQHELDHLIGKLFIDRMTDFSTLTQMDEFQK 166 >gi|119716668|ref|YP_923633.1| peptide deformylase [Nocardioides sp. JS614] gi|119537329|gb|ABL81946.1| peptide deformylase [Nocardioides sp. JS614] Length = 181 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR+ + + + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAIQPIRLFGDPVLRKPAIEVVDFDKELRRLVADLTDTMMDAPGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + P +NP++ SD+ EGCLSIP D +R+ R + Sbjct: 61 WYVDG-----EPGHLVNPQLD-LSDELQDGPEGCLSIPGLSVDCQRAMAAVARGFNMYGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I LLA LQHE DHL+G+LFID L R K + + Sbjct: 115 PVTIEGTELLARALQHETDHLDGVLFIDRLDTEARKAAMKAIRE 158 >gi|255656564|ref|ZP_05401973.1| peptide deformylase 2 [Clostridium difficile QCD-23m63] gi|296449984|ref|ZP_06891748.1| peptide deformylase [Clostridium difficile NAP08] gi|296878365|ref|ZP_06902373.1| peptide deformylase [Clostridium difficile NAP07] gi|296261254|gb|EFH08085.1| peptide deformylase [Clostridium difficile NAP08] gi|296430663|gb|EFH16502.1| peptide deformylase [Clostridium difficile NAP07] Length = 146 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 96/152 (63%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +EKI+ I+ L+D+M E MY DG+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II S + + +EGCLS+ +V+R ++ VR ++ N + Sbjct: 61 IDIGE-----ELIELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA HELDHL+GILF+D + + Sbjct: 115 TIELEGEELLARAFCHELDHLDGILFVDKIEK 146 >gi|255019795|ref|ZP_05291871.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] gi|254970724|gb|EET28210.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] Length = 171 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 98/164 (59%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M P++ +PDP L R + P+E+ + ++ + + ++ E MY+ G +G+AA Q+ L R+V Sbjct: 1 MAVLPILTYPDPRLHRKAEPVEQFDEELRSFVADLTETMYAGPGGVGIAAPQVDRLQRIV 60 Query: 60 VIDLQDHAHRK--NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++D++ + INP++I + + +V +EGC+S+PD+ +V R+ I V+ D Sbjct: 61 LVDVRPKLGDDCHGFLCLINPELIAW-EGMAVGREGCMSVPDFTGNVIRAERIQVQAQDL 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + +I G A +QHE+DHL+G LF+D L K D+ +K Sbjct: 120 DGRSRIFECAGFEARAVQHEMDHLDGFLFLDRLVSRKTDLFRRK 163 >gi|72383267|ref|YP_292622.1| peptide deformylase [Prochlorococcus marinus str. NATL2A] gi|123773734|sp|Q46HV9|DEF_PROMT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|72003117|gb|AAZ58919.1| peptide deformylase [Prochlorococcus marinus str. NATL2A] Length = 202 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 98/159 (61%), Gaps = 2/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D LR + I K++ I L +ML MYS+ GIGLAA Q+G+ RL+VIDL+ Sbjct: 33 VYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVIDLKF 92 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 PMVFINP+II+ S Y+EGCLSIP +V R + I + Y D + + + Sbjct: 93 EDPNSPPMVFINPEIISSSATLDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKKMN 152 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGL+A C+QHE+DHLNG+ F+D ++ + + K++++ Sbjct: 153 ADGLMARCIQHEIDHLNGVCFVDKVTDE--EELKKQLNE 189 >gi|256789194|ref|ZP_05527625.1| polypeptide deformylase [Streptomyces lividans TK24] gi|23396573|sp|Q9FCA2|DEF2_STRCO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 Length = 179 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 78/167 (46%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + ++ L++++ MY+ G+GLAA Q+G R+ V D Sbjct: 13 VRPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 73 CPDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G A CLQHE DHL G ++ D L+ + + +++++ R Sbjct: 133 TVRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVARASWHR 179 >gi|219669870|ref|YP_002460305.1| peptide deformylase [Desulfitobacterium hafniense DCB-2] gi|254767579|sp|B8FS81|DEF_DESHD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219540130|gb|ACL21869.1| peptide deformylase [Desulfitobacterium hafniense DCB-2] Length = 150 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +LR + P+++I +I L+DNML+ +Y +G+GLAA Q+GV R+VV Sbjct: 1 MAIYQIVEIGSEVLREKAVPVKEITPNIAKLLDNMLDTLYDANGVGLAAPQVGVSKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP II + + EGCLSIP V R+A + V ++ + Sbjct: 61 IDVGE-----GPLELINPVIIAKEGE-DLDDEGCLSIPGITGQVARAAKVKVEALNRQGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 Q+I +GLL+ CLQHE+DHL GILF+D + R Sbjct: 115 LQVIEGEGLLSRCLQHEIDHLEGILFVDKAKKTSRR 150 >gi|238916653|ref|YP_002930170.1| hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750] gi|238872013|gb|ACR71723.1| Hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750] Length = 171 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR ++ I ++ I LID+M + MY +G+GLAA Q+G+ RLVV Sbjct: 15 MAIRNIRTLGDDILRAKAKEITEMTPRIEELIDDMFDTMYEANGVGLAAPQVGIRKRLVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D +P+V INP ++ S EGCLS+P +V R + V+ ++ N + Sbjct: 75 IDCGD-----DPIVLINPVVLETSGS-QTGLEGCLSVPGKTGEVTRPNYAKVKALNENME 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I+ + LLA CL HE+DHL+GI+++D + Sbjct: 129 EIIVEGEELLARCLLHEIDHLDGIMYVDKVE 159 >gi|315646177|ref|ZP_07899297.1| peptide deformylase [Paenibacillus vortex V453] gi|315278376|gb|EFU41692.1| peptide deformylase [Paenibacillus vortex V453] Length = 164 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 7/166 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PD +L + ++ + KI ++ L+D+M + MY DG+GLAA Q+G+L RL+V Sbjct: 1 MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDADGVGLAAPQVGILKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D + INP+I+ S+ EGCLSIP + DV+R+ +TV+ +D Sbjct: 61 IDAGD---EHGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI---DHLSRLKRDMITKKMS 163 I+ GLLA QHE+DHLNG+LF D + + K++ Sbjct: 117 ELIVTGTGLLARAFQHEIDHLNGVLFTEIADRVYEYVPEQPRKELE 162 >gi|332529198|ref|ZP_08405162.1| peptide deformylase [Hylemonella gracilis ATCC 19624] gi|332041421|gb|EGI77783.1| peptide deformylase [Hylemonella gracilis ATCC 19624] Length = 179 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV++P++ + ++ L+ ++L+ M++ +G GLAA QIGV R+V Sbjct: 1 MAVRDILKMGDPRLLRVAQPVQAFDTDELHLLVSDLLDTMHAANGAGLAAPQIGVDLRVV 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A V NP I SD+ EGCLS+P R V R I + Sbjct: 61 IFGSGQTNPRYPDAPVVPRTVLCNPVITPLSDEEQHDWEGCLSVPGLRGVVPRWQRIRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D +G A +QHE DHL+G L+ + R T+ + Sbjct: 121 GFDQYGDPIDRTVEGFHARVVQHECDHLDGKLYPMRVRDFTRFGFTEVL 169 >gi|126695417|ref|YP_001090303.1| peptide deformylase [Prochlorococcus marinus str. MIT 9301] gi|126542460|gb|ABO16702.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9301] Length = 201 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ S+ I K++ I L ML+ MY+ GIGLAA QIG+ L+VID+ Sbjct: 32 DIYKLGDDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDVN 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INP+I F + Y+EGCLSIP +V R + I +++ D + + + Sbjct: 92 FEDSAAEPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNGILF+D ++ +D + K++ K Sbjct: 152 KADGLLARCIQHEMDHLNGILFVDRVTS--KDDLNKELLK 189 >gi|295394412|ref|ZP_06804636.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] gi|294972764|gb|EFG48615.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] Length = 193 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 6/171 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V++ +P+L R + P+ + ++ L+ +M E + +++G+GLAA QIGV ++ V Sbjct: 1 MAIHPIVVYGEPVLHRKADPVTEFGDELHTLVADMYETLTASNGVGLAAPQIGVGKQIYV 60 Query: 61 IDLQDH-AHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D A + VFINP K+ T + D S EGCLS+P +KR+ +TV Sbjct: 61 YDADDEVAGVRRRGVFINPVLVASKVPTTNPDPSEDTEGCLSVPVLDYPLKRADKVTVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +D N Q + +G A +QHE DHL+G L++D L K+ K Sbjct: 121 VDENNQPVSLSVEGWFARIMQHEFDHLHGTLYVDRLDTRWAKRWKKEQKKH 171 >gi|148245003|ref|YP_001219697.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA] gi|146326830|dbj|BAF61973.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA] Length = 180 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 109/180 (60%), Gaps = 15/180 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ +PD LR ++ + +N I LI NM E MY+ +GIGLAA Q+ ++VVI Sbjct: 1 MILPILSYPDKRLRIKAKNVNIVNKTIQTLIKNMFETMYARNGIGLAATQVNQHLQIVVI 60 Query: 62 DLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 D+ + +++P+ FINP+I + EGCLS+ D++A+++R+ Sbjct: 61 DVPNSQFLFKNRKNNSQKLLQKQHPLCFINPEIKEKYG-QEKHTEGCLSVSDFQAEIQRA 119 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I V+ ++ + I+ A GLLA C+QHE+DHL GILF+D+LS+LK+ + +++ K+ + Sbjct: 120 NHIKVKALNEKGEIFILQATGLLAICIQHEIDHLKGILFVDYLSKLKQKRLLERIKKMTK 179 >gi|295840257|ref|ZP_06827190.1| peptide deformylase [Streptomyces sp. SPB74] gi|295827867|gb|EDY45695.2| peptide deformylase [Streptomyces sp. SPB74] Length = 196 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 76/167 (45%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + P+L +R + L++++ MY+ G+GLAA QIG RL V D Sbjct: 26 VRPLSLHGAPVLTTPARESGDFGPRLEKLVEDLFATMYAARGVGLAAPQIGEGVRLFVYD 85 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A R V + + Sbjct: 86 CPDDEDERHLGHLVNPRLVEVDGPLVRGPEGCLSLPGLEAATPRFDRAVVEGRTADGTRR 145 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G A CLQHE DHL G L++D L +R + ++ + R Sbjct: 146 RVEGTGFFARCLQHEYDHLEGGLYVDRLDPRRRRKVLREAGRTTWGR 192 >gi|295836587|ref|ZP_06823520.1| peptide deformylase [Streptomyces sp. SPB74] gi|197697279|gb|EDY44212.1| peptide deformylase [Streptomyces sp. SPB74] Length = 210 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 3/165 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ + +P+L + + ++ L+D+M + +G+GLAA Q+GV ++ V D Sbjct: 35 VLPITVVGNPVLHKECADVTDFGPELAKLVDDMFASQRAAEGVGLAANQVGVSLKVFVYD 94 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCNA 119 QD ++ V NPK+ + EGCLS+P A R+ + V D + Sbjct: 95 CQDDQGERHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHG 154 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L++D LS+ R K+M++ Sbjct: 155 NAIKVRGTGYFARCLQHETDHLYGSLYLDRLSKRDRKDALKQMAE 199 >gi|160947099|ref|ZP_02094266.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270] gi|158446233|gb|EDP23228.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270] Length = 164 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 95/148 (64%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+LR+ +R +E I+ I NL+++M E MY++DG+GLA QIG+L RLV Sbjct: 1 MALRNIRIDDDPVLRKKARKVEVIDDKIKNLLEDMAETMYNSDGVGLACPQIGILKRLVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + INP+I+ S + V EGCLSIPD R VKR + +Y D + Sbjct: 61 IDVGD---EHGLLKMINPEILESSGE-QVGPEGCLSIPDVRGFVKRPEKVKFKYTDVDEN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 QII A GLLA C+ HE+DHLNGILF D Sbjct: 117 EQIIDATGLLAVCICHEIDHLNGILFTD 144 >gi|157375143|ref|YP_001473743.1| peptide deformylase [Shewanella sediminis HAW-EB3] gi|157317517|gb|ABV36615.1| Peptide deformylase [Shewanella sediminis HAW-EB3] Length = 163 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 5/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I + ID++L+ MY T DGIGLAA Q+G L+ ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-ESVQGFIDDLLDTMYDTEDGIGLAATQVGSLHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL R P V INP+II DF V +EGCLSIP YRA V RS + ++ +D Sbjct: 60 VIDLSP--ERDQPQVLINPEIIEAEGDF-VGEEGCLSIPGYRAKVTRSEKVKIKALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I D LA +QHE++HL G++F DHLS+LK+ + KK+SK Sbjct: 117 TPFEIETDTFLAIVIQHEMEHLQGVVFTDHLSKLKQQIALKKVSK 161 >gi|307328361|ref|ZP_07607537.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306885934|gb|EFN16944.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 170 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 70/145 (48%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP LR + ++++ LI++M MY+ G+GLAA QIGV R+ V D D Sbjct: 2 RFLGDPGLRAPCAEVTAFDAELALLIEDMYATMYAAHGVGLAANQIGVGLRVFVFDCPDD 61 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 ++ +NP++ EGCLS+P A R + + + I Sbjct: 62 EDHRHLGHVVNPRLAAADGVNVHGPEGCLSLPGIEAGTSRYDRAVIEGVTMTGEPVRIEG 121 Query: 127 DGLLATCLQHELDHLNGILFIDHLS 151 G A CLQHE DHL+G LF+D LS Sbjct: 122 TGFFARCLQHECDHLDGGLFLDRLS 146 >gi|152981418|ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp. Marseille] gi|151281495|gb|ABR89905.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp. Marseille] Length = 178 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV+ P+++ ++ LI++M + M++ +G GLAA QIGV RLV Sbjct: 1 MTVREILKMGDPRLLRVAEPVKEFGTPELDALIEDMFDTMHAANGAGLAAPQIGVNLRLV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + A V INPK+ S + EGCLS+P R V R + + Sbjct: 61 IYGFKQNTRYPDAPPVPETVLINPKLRPLSAEMEDGWEGCLSVPGLRGVVPRFSALHYDG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D ADG A +QHE DHL+GIL+ ++ L Sbjct: 121 FDQYGNVISRDADGFHARVVQHECDHLDGILYPMRITDL 159 >gi|15888871|ref|NP_354552.1| peptide deformylase [Agrobacterium tumefaciens str. C58] gi|23396558|sp|Q8UF49|DEFL_AGRT5 RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|15156637|gb|AAK87337.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58] Length = 164 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L + P+ + + L+ ++++ M + G+G+ A IGVL R+ V Sbjct: 1 MAIRPILPYPHAGLSGICAPVTVFDDHLRELVTDLIDTMRAAPGVGITAAHIGVLQRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +INP+I + S + EG +S+P + +V+R + + VR+ D Sbjct: 61 LELTP----GTILTYINPEITSHSPQTMRHVEGSVSMPGFTDEVERPSTVEVRFQDITGA 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q A+G A C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 117 EQTETAEGFHAICIQHEIDQLDGIFWLKRLSRLKRDRLVKKWEK 160 >gi|330837393|ref|YP_004412034.1| peptide deformylase [Spirochaeta coccoides DSM 17374] gi|329749296|gb|AEC02652.1| peptide deformylase [Spirochaeta coccoides DSM 17374] Length = 167 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 4/165 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V + +LRR + P++ ++ + L+D+M + + G+GLAA Q+GV RL ++D++ Sbjct: 3 EIVTLGEDVLRRRAEPVKVFDAALRLLVDDMFDSLAQERGVGLAAPQVGVSQRLFIVDIE 62 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 VFINP+II S + + Y+EGCLSIP DV R IT++ D + + Sbjct: 63 G----GEKGVFINPEIIETSMEQTPYEEGCLSIPGIWHDVVRPQRITMQAQDVTGKFFTV 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ADG+ A LQHE DHLNG LFID L+ + + K + R Sbjct: 119 KADGMFARVLQHEYDHLNGTLFIDRLNEQDKKKVLDAYEKKQKPR 163 >gi|167763509|ref|ZP_02435636.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC 43183] gi|167698803|gb|EDS15382.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC 43183] Length = 184 Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+VV+ Sbjct: 1 MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL ++ +IN I+ S + +EGCLS+P VKR I V+Y+D Sbjct: 61 DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +FIDHLS L+R MI K++ +++ + Sbjct: 121 EDLVEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRRQMIKGKLNAMLKGK 173 >gi|220928951|ref|YP_002505860.1| peptide deformylase [Clostridium cellulolyticum H10] gi|219999279|gb|ACL75880.1| peptide deformylase [Clostridium cellulolyticum H10] Length = 159 Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR++SRP++ I+ I+ L+++M + MY DG+GLAA QIG+L R+VV Sbjct: 1 MAYRQIRKDGDEVLRKISRPVDSIDKKILALLEDMADTMYRADGVGLAAPQIGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + INP I+ S + EGCLSIP VKR +T+RY D N + Sbjct: 61 IDVGDGLYE-----MINPIILEQSGE-QDGMEGCLSIPGVLGKVKRPMKVTLRYTDRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A A + HELDHL+GIL+ D ++ + ++M K Sbjct: 115 SITIEAKEFFARAICHELDHLDGILYKDKAHKMYTEKELEEMQK 158 >gi|260904911|ref|ZP_05913233.1| peptide deformylase [Brevibacterium linens BL2] Length = 200 Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI+ +P+L + + I + ++ LI +M E + +++G+GLAA QIGV R+ V Sbjct: 10 MAIHPIVIYGEPVLHQRAEKITDFDEELATLIADMHETLDASNGVGLAAPQIGVGKRIFV 69 Query: 61 IDLQDHA-HRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + +D + FINP K+ D EGCLS+P +KR+ +TV Sbjct: 70 FNAEDEEAGVRRRGTFINPLLIASKVPDTRPDPVEETEGCLSVPSLDFPLKRADRVTVNG 129 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 +D Q + A+G A +QHE DHL G L++D L + K+ Sbjct: 130 LDETGQSVSLTAEGWFARIMQHEYDHLQGTLYVDRLDKRWSKKWKKE 176 >gi|297162299|gb|ADI12011.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 185 Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 72/146 (49%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P+ + DP+L + ++ + L+++M MY+ G+GLAA Q+GV R+ V D Sbjct: 13 VRPMRLLGDPVLATSCEEVTAFDAALGRLVEDMYATMYAAQGVGLAANQVGVALRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D R++ +NP+++ EGCLS+P A R V + + Sbjct: 73 CPDDEDRRHLGHVVNPRLVEADGVTVRGPEGCLSLPGIEAGTVRHDHAVVEGVTATGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 + G A CLQHE DHL+G LF D Sbjct: 133 RVEGTGFFARCLQHECDHLDGRLFTD 158 >gi|295399762|ref|ZP_06809743.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] gi|294978165|gb|EFG53762.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] Length = 157 Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +P IL + P+++ + ++ L+++M + M DG+GLAA Q+G+ ++ V Sbjct: 1 MAILPIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R INP+I+ + + EGCLS P A+VKR+ ++ VR D + Sbjct: 61 VDVGDEHGRIE---LINPRIMEARGE-QIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A G LA LQHE+DHLNG+LF + R Sbjct: 117 PFTLKATGFLARALQHEIDHLNGMLFTSKVIR 148 >gi|312884517|ref|ZP_07744221.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367829|gb|EFP95377.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] Length = 171 Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M P++ PDP L+ + + + + + ID+ML+ +YS +GIGLAA Q+G +V Sbjct: 1 MAVLPILTTPDPRLKYEAEQVTDFDK-VQSFIDDMLDTLYSTANGIGLAATQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R P++ +NPK++ + + QEGCLS+PDY ADV+R + V+ D Sbjct: 60 VIDLSEA--RDQPLILVNPKVV-CGKNREMGQEGCLSVPDYYADVERFTSVVVQAQDRLG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +D LA +QHE+DHL+G LFID+LS LKR M KK+ K ++ Sbjct: 117 NAIKVESDDFLAIVMQHEIDHLSGRLFIDYLSPLKRQMALKKVKKHIK 164 >gi|271964329|ref|YP_003338525.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270507504|gb|ACZ85782.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 182 Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR + P++ + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAIQSIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMMDAPGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + INP + + +EGCLS P R+ + ++ + + Sbjct: 61 YYVDEQLG-----HLINPNLDLSEEKDEEGEEGCLSFPGLSFPTPRAIRAVAKGLNMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + L+A C QHE DHL+G+LFID + +R + K++ + Sbjct: 116 PVTLEGTDLMARCFQHETDHLDGVLFIDRMDLKQRKLAMKEIREAEW 162 >gi|212709522|ref|ZP_03317650.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM 30120] gi|212687860|gb|EEB47388.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM 30120] Length = 168 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 100/158 (63%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + ++ PD LR P+ + + L+D+++E MYST +GIGLAA QI ++ Sbjct: 1 MAVREIIEIPDERLRIQCSPVTDF-AAVQTLVDDLIETMYSTDNGIGLAATQIAETKAIM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + R PMVFINP+II S+ + YQEGCLS+PD ADV R + V+ D + Sbjct: 60 VIDISE--ERNEPMVFINPEIIE-SEGETSYQEGCLSVPDVYADVPRFLRVKVKAFDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 ++ +D LA +QHE+DHLNG +FIDHLS LKR+M Sbjct: 117 NEFVVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154 >gi|149913451|ref|ZP_01901984.1| peptide deformylase [Roseobacter sp. AzwK-3b] gi|149812571|gb|EDM72400.1| peptide deformylase [Roseobacter sp. AzwK-3b] Length = 165 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + P+E I ++ + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MAVRRCLPWPDKRLRSPAAPVEAITDEVRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+I+ S + ++E ++P A +KR +TVR+++ + Sbjct: 61 VDASET--RGQAVRMANPEILHSSIELRSHEEASPNLPGVSAAIKRPRAVTVRFLNTQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + GL AT +QH++D L G LF+D LS++KRDM+ +K KL Sbjct: 119 MEERDFVGLWATSVQHQIDQLEGRLFVDRLSKVKRDMLLRKARKLA 164 >gi|149370599|ref|ZP_01890288.1| peptide deformylase [unidentified eubacterium SCB49] gi|149356150|gb|EDM44707.1| peptide deformylase [unidentified eubacterium SCB49] Length = 196 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + P+L+++++ I+K ++ L+ NM E MY+ G+GLAA QIG+ R+ ++ Sbjct: 1 MILPIVAYGAPVLKKLAKDIDKDYPELDELLANMYETMYNASGVGLAAPQIGLPIRIFIV 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + FIN KII + D + EGCLSIPD R DV R Sbjct: 61 DASPFSDDDELDPAEQEFLSTFKQTFINAKIIEETGDEWAFNEGCLSIPDVREDVFRKPD 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + Y D + + GL A +QHE DH+ GILF D LS+LK+ +I +++ + + + Sbjct: 121 IVIEYYDEDFKKHTEKFTGLAARVIQHEYDHIEGILFTDKLSQLKKRLIKRRLEDISKGK 180 >gi|302380585|ref|ZP_07269050.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3] gi|302311528|gb|EFK93544.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3] Length = 162 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 3/160 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+ SR +EKI+ I + ++M E MY GIGLA VQ+G+L R+VV Sbjct: 1 MALRQIRLENDPILRKKSREVEKIDDRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD + MV INPKII S+D + EGCLS+P V+R + V Y D N Sbjct: 61 IDMQDEDGK---MVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 Q + A C HELDHL+G+L+ D + L + + + Sbjct: 118 TQRVTGTDYKAHCFCHELDHLDGVLYTDKVLNLSEEEVER 157 >gi|281420284|ref|ZP_06251283.1| peptide deformylase [Prevotella copri DSM 18205] gi|281405586|gb|EFB36266.1| peptide deformylase [Prevotella copri DSM 18205] Length = 185 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 6/173 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V+ I D+ LI+NM E + S++GIGLAA QIG+ RLVVI Sbjct: 1 MILPIYIYGQPVLRKVAEDITPDYPDLKVLINNMYETLDSSNGIGLAAPQIGLPIRLVVI 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL ++ FIN I+ ++ +EGCLSIP V R I V+YM Sbjct: 61 DLDVLSEDFPEYKGFRHAFINAHILERDEENTDSSEEGCLSIPGINEKVVRPTRIHVKYM 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + +G LA +QHE DHL G +F+D +S L+++MI K+ +++ Sbjct: 121 DEDFNEHDEWIEGYLARVMQHEFDHLEGTMFVDRVSPLRKNMIAGKLKSIIKG 173 >gi|291563557|emb|CBL42373.1| peptide deformylase [butyrate-producing bacterium SS3/4] Length = 158 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D IL + +P++++N + LI++M E MY +G+GLAA Q+GV R+VV Sbjct: 1 MAIRQIRTIGDEILTKECKPVKEMNERTLELIEDMFETMYENNGVGLAAPQVGVRKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D N V INP+I+ S QEGCLS+P V R+ + + ++ N + Sbjct: 61 IDVED----GNQYVLINPEILETSGS-QTGQEGCLSVPGKCGQVTRADHVKAKALNENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I ADGLLA C+ HE DHL+G L++D + +D Sbjct: 116 EYEIEADGLLARCILHECDHLDGKLYVDLVEGELQDTA 153 >gi|127513031|ref|YP_001094228.1| peptide deformylase [Shewanella loihica PV-4] gi|126638326|gb|ABO23969.1| peptide deformylase [Shewanella loihica PV-4] Length = 163 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 71/165 (43%), Positives = 104/165 (63%), Gaps = 5/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P+E I + + ID+++E MY TD GIGLAA Q+G + ++ Sbjct: 1 MPVLDILTIPDERLKRKAKPVEDI-AAVQGFIDDLIETMYHTDDGIGLAATQVGSEHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R PMV INP+ + S + V +EGCLSIP YRA V R + V+ ++ Sbjct: 60 VIDLSE--DRDQPMVVINPEFVERSGEI-VGEEGCLSIPGYRAKVTRFEKVKVKALNREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I +D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 EAFEIESDDFLAIVLQHEMDHLDGKVFIEHLSPLKQQIALKKVKK 161 >gi|156097168|ref|XP_001614617.1| formylmethionine deformylase [Plasmodium vivax SaI-1] gi|148803491|gb|EDL44890.1| formylmethionine deformylase, putative [Plasmodium vivax] Length = 186 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 95/163 (58%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V++PDP+LR+ + + ++ L+ +M VMY + G+GLAA Q+ + R++V + L Sbjct: 12 IVLYPDPVLRKKCDEVVHFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISRRIIVWNALY 71 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + ++N VFINP I+ S S EGCLS PD V R + +++ Y D + + Sbjct: 72 EKKKKENERVFINPSIVEPSLVRSKLVEGCLSFPDIEGKVDRPSVVSISYYDLDGNKHLK 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ A QHE DHL+G+LFID S+ +R + K++ L++ Sbjct: 132 ILKGIHARIFQHEYDHLDGVLFIDRFSQSERHKVRAKLNALIR 174 >gi|86610195|ref|YP_478957.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558737|gb|ABD03694.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 196 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 90/146 (61%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ ++ I ++N +I L +ML+ MYS DGIGLAA Q+G+ R++V+DL Sbjct: 21 IYRMGDKVLRQPAKRISQVNDEIRQLARDMLQTMYSFDGIGLAAPQVGIPKRMIVVDLYP 80 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+V INP+I + + QEGCLSIP +V R I V + D + + + Sbjct: 81 DKPEVPPLVLINPEIREYIGEAVAGQEGCLSIPGVFCEVMRPEGIVVSFKDETGRPRTLR 140 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 AD LLA +QHE+DHLNG+LF+DH+ Sbjct: 141 ADDLLARVIQHEIDHLNGVLFVDHVE 166 >gi|262038785|ref|ZP_06012139.1| peptide deformylase [Leptotrichia goodfellowii F0264] gi|261747196|gb|EEY34681.1| peptide deformylase [Leptotrichia goodfellowii F0264] Length = 170 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 96/163 (58%), Gaps = 5/163 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ P LR S ++ ++ ++ ++D M+E M +G+GLAA Q+ + R V+++++ Sbjct: 3 IVLYEHPTLRTKSTEVDIVDDELRKILDEMVETMRKANGVGLAANQVDIPKRFFVLEVEN 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +NP+II SD+ Y+EGCLSIP V R + I V+Y++ + I Sbjct: 63 KVKK-----IVNPEIIESSDEIIEYEEGCLSIPGIYKKVNRPSEIKVKYLNEKGEEVIEE 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A QHELDHL+G+LFID +S L + +I+KK+ + + Sbjct: 118 LKEMWARAFQHELDHLDGVLFIDRISVLNKRLISKKLELMKKE 160 >gi|254431727|ref|ZP_05045430.1| peptide deformylase [Cyanobium sp. PCC 7001] gi|197626180|gb|EDY38739.1| peptide deformylase [Cyanobium sp. PCC 7001] Length = 183 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 88/149 (59%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR +R I K++ + L +ML MY+ GIGLAA Q+GV +L+VIDL Sbjct: 14 EIHTLGDAVLRTPARRISKVDEAVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDLD 73 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 PMV INP+I +F Y+EGCLSIP +V R + V + D + Q + Sbjct: 74 PDNPATPPMVLINPEIRSFGGSLDTYEEGCLSIPGVYLNVVRPTAVEVSFRDEMGRPQKL 133 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153 DGLLA C+QHE+DHLNG+LF+D ++ Sbjct: 134 RTDGLLARCIQHEMDHLNGVLFVDRVTDE 162 >gi|256827225|ref|YP_003151184.1| peptide deformylase [Cryptobacterium curtum DSM 15641] gi|256583368|gb|ACU94502.1| peptide deformylase [Cryptobacterium curtum DSM 15641] Length = 175 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 86/155 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V+ PDPILR+ + + + + +L M E MY +G GLAA Q+GVL RL+VID Sbjct: 3 IVLSPDPILRQRAEEADIADESLKSLAQQMAETMYENNGCGLAAPQVGVLKRLIVIDCDT 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +NP+ INP I+ + ++ EGCLS+P ++R AF V Y D + I Sbjct: 63 ESEERNPITLINPVILETAGEWETEGEGCLSVPGITVPIRRRAFARVEYRDLDGNVCTIE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 DGLL CLQHE+DHLNG + + R + Sbjct: 123 GDGLLGRCLQHEIDHLNGKTLFESCDPITRIAALR 157 >gi|239939651|ref|ZP_04691588.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|239986135|ref|ZP_04706799.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 11379] Length = 181 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 71/149 (47%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + DP+L R + + LI++M MY+ G+GLAA QIGV ++ V D Sbjct: 13 VREMSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + + Sbjct: 73 CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 I G A CLQHE DHL G ++ D L+ Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYPDRLT 161 >gi|110597712|ref|ZP_01385996.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031] gi|110340619|gb|EAT59099.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031] Length = 186 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ D ILR+ ++P++ I+S I LI +M E M + +GIGLAA Q+G RL+V+ Sbjct: 1 MILPINIYSDDILRQKAKPLKGIDSTIEALIASMFESMRNAEGIGLAAPQVGHSVRLLVL 60 Query: 62 DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DL + N PMV INP I+ S +V +EGCLSIP DV+R A I+++Y D + Sbjct: 61 DLSCIDNYANEKPMVVINPHILAVSG-CNVMEEGCLSIPGVNGDVERPAVISLKYRDEHF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + G+LA LQHE+DHL+G LF+D + + R I K+++ + Sbjct: 120 LERTREFSGMLARALQHEIDHLDGTLFVDRMEKRSRKKIQKELTDIA 166 >gi|78187332|ref|YP_375375.1| formylmethionine deformylase [Chlorobium luteolum DSM 273] gi|123730026|sp|Q3B2U9|DEF_PELLD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78167234|gb|ABB24332.1| peptide deformylase [Chlorobium luteolum DSM 273] Length = 190 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + D +L + ++P++ +++DI +LID+M E M + GIGLAA Q+G RL+V+ Sbjct: 1 MILPINTYSDEVLHQKAKPLKGVDADISSLIDSMFESMENASGIGLAAPQVGCSIRLLVL 60 Query: 62 DLQDHA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D+ PMV INP ++ ++ +EGCLS+P + DV R + IT++Y D N Sbjct: 61 DVSCMKSYEDVPPMVVINPNVLAVRG-KNLMEEGCLSVPGVQGDVLRPSEITLKYRDRNF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q G+LA LQHE+DHLNG LF+D + + R I +++ + Sbjct: 120 QEHTEEFSGMLARVLQHEIDHLNGTLFVDRMEKRDRRRIQQELDDIA 166 >gi|227549209|ref|ZP_03979258.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] gi|227078663|gb|EEI16626.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] Length = 166 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 5/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+L P+ + + + L+ ++L M G+GLAA Q+GV R+ V Sbjct: 1 MAVRPIRLFGDPVLNSAVAPVTRFDEALRVLVCDLLNTMDDAGGVGLAANQVGVDARVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D Q INP + D+ + +EGCLS+P V R + R +D + + Sbjct: 61 FDCQGMRG-----HIINPSWASAGDEVQIGREGCLSVPGISGPVSRYNRVVARGVDADGR 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I GLLA C+QHE DHL+GI+F+ + R Sbjct: 116 PLAISGTGLLARCIQHESDHLDGIMFMRRMDSAARKEAM 154 >gi|189499854|ref|YP_001959324.1| peptide deformylase [Chlorobium phaeobacteroides BS1] gi|238692288|sp|B3EPG5|DEF_CHLPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189495295|gb|ACE03843.1| peptide deformylase [Chlorobium phaeobacteroides BS1] Length = 185 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 105/170 (61%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + D +LRR ++P+++ ++ + LI NMLE M + +GIGLAA Q+GV RL+V+ Sbjct: 1 MILPINTYSDEVLRRKAKPLKESDAQLEELISNMLESMRNAEGIGLAAPQVGVSLRLIVV 60 Query: 62 DLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DL + +PMV INP I++ F+ +EGCLSIPD R DV R + I ++Y D N Sbjct: 61 DLSLAEGYEAASPMVVINPHILSVK-SFNSMEEGCLSIPDVRGDVVRPSAIQLKYRDRNF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I D L A +QHE+DHL+G LF+D + R R I K++ L + Sbjct: 120 EECIGEFDRLAARVIQHEIDHLDGTLFVDRMQRRDRRKIQKELDALSRGE 169 >gi|225628893|ref|ZP_03786927.1| peptide deformylase [Brucella ceti str. Cudo] gi|225616739|gb|EEH13787.1| peptide deformylase [Brucella ceti str. Cudo] Length = 214 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 51 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A K ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 111 LELDRAAGSK---IYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 214 >gi|226310454|ref|YP_002770348.1| peptide deformylase [Brevibacillus brevis NBRC 100599] gi|226093402|dbj|BAH41844.1| peptide deformylase [Brevibacillus brevis NBRC 100599] Length = 171 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 66/151 (43%), Positives = 97/151 (64%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M K ++ F DPILR+V++P+E++N L+D M E +Y+ DG GLAA QIG+L R+V Sbjct: 1 MAVKQILPFGDPILRKVAKPVEELNEKTFKLLDEMAETLYAADGRAGLAAPQIGILRRVV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D D + INP+II S + + E CLS P Y +VKR+ + V+ ++ Sbjct: 61 VMDCGD-----GLIELINPEIIERSGE-QIGMEACLSFPGYYGNVKRAEHVKVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I+ DG LA C+QHE+DHL+GILF+DH+ Sbjct: 115 EEMILAGDGFLAVCMQHEIDHLDGILFVDHV 145 >gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase [Herbaspirillum seropedicae SmR1] gi|300074269|gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R ++P+ + ++ L+D+M + M + +G GLAA QIGV +LV Sbjct: 1 MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP + S+ EGCLS+P R V R + + + Sbjct: 61 IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D N + +G A +QHE DHL GIL+ + +R T+ + Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVL 168 >gi|330881833|gb|EGH15982.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 136 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 2/136 (1%) Query: 33 DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQE 92 D+M E MY GIGLAA Q+ V R+VV+DL + R PMVFINP+I +D+ YQE Sbjct: 1 DDMFETMYEAPGIGLAATQVNVHKRVVVMDLSE--DRSEPMVFINPEIEKLTDEMDQYQE 58 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 GCLS+P + +V R + V+ +D N + + A+GLLA C+QHE DHLNG LF+D+LS Sbjct: 59 GCLSVPGFYENVDRPQKVRVKALDRNGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSN 118 Query: 153 LKRDMITKKMSKLVQL 168 LKRD I KK+ K +L Sbjct: 119 LKRDRIKKKLEKQHKL 134 >gi|17985009|gb|AAL54054.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M] Length = 203 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 40 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 99 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 100 LELDRAAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 156 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 157 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 203 >gi|297811599|ref|XP_002873683.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319520|gb|EFH49942.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 273 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 88/162 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 83 IVEYPDPILRAKNKRIGVFDQNLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP I +SD + EGCLS P A+V R + + D + I Sbjct: 143 EPGEGEEIVLVNPIIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A QHE DHL G+LF D ++ D I +++ L + Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 244 >gi|169824358|ref|YP_001691969.1| polypeptide deformylase [Finegoldia magna ATCC 29328] gi|238687734|sp|B0S139|DEF_FINM2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167831163|dbj|BAG08079.1| polypeptide deformylase [Finegoldia magna ATCC 29328] Length = 162 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 3/160 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+ SR +EKI+ I ++++M E MY GIGLA VQ+G+L R+VV Sbjct: 1 MALRQIRLENDPILRKKSREVEKIDDRIKQIVEDMFETMYENKGIGLACVQVGMLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD + MV INPKII S++ + EGCLS+P V+R + V Y D N Sbjct: 61 IDMQDEDGK---MVLINPKIIEKSEEKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 Q + A C HELDHL+G+L+ D + L + + + Sbjct: 118 TQRVMGTDYKAHCFCHELDHLDGVLYTDKVLNLSEEEVER 157 >gi|318040515|ref|ZP_07972471.1| peptide deformylase [Synechococcus sp. CB0101] Length = 200 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 92/153 (60%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR ++ I K++ I +L +ML MY+ GIGLAA QIG +L+VIDL+ Sbjct: 31 DIHTLGDQVLRTPAKRIGKVDDSIRSLARDMLVSMYAAKGIGLAAPQIGEPLQLLVIDLE 90 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P++ INP+I + Y+EGCLSIP DV R + + V Y D + + + Sbjct: 91 IEDPKSPPLILINPEITSVGGSLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDEMGRPKRL 150 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 ADGL+A C+QHE+DHLNG+LF+D ++ + Sbjct: 151 KADGLMARCIQHEMDHLNGVLFVDRVTDHDKLR 183 >gi|39931120|sp|Q89N37|DEFL_BRAJA RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|27352266|dbj|BAC49270.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110] Length = 170 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV +PD L +RP+ + ++ L ++L+ M + GIG+ A IGV R+VV Sbjct: 6 MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + ++NP+I S + +++EG +S+P +V+R A + + Y D + Sbjct: 66 LELDAKDGAR---TYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 122 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q ++ L A C QHE+D L+G+ +I LSRLKR+ + KK K+ + Sbjct: 123 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKMSRG 170 >gi|257464084|ref|ZP_05628468.1| polypeptide deformylase [Fusobacterium sp. D12] gi|317061604|ref|ZP_07926089.1| polypeptide deformylase [Fusobacterium sp. D12] gi|313687280|gb|EFS24115.1| polypeptide deformylase [Fusobacterium sp. D12] Length = 173 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + D +LR+++ +E++N +I ++ NM+E MY+ DG+GLAA Q+G+ R+ V Sbjct: 1 MIYEIKKYGDSVLRKIAEKVEEVNDEIREILRNMVETMYARDGVGLAAPQVGISLRMFVC 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ N INP I +++ +EGCLSIP V+R A + + Y + + Sbjct: 61 DI-GTPEESNVKKIINPLITPLTEETISVEEGCLSIPGIYKKVERIAKLKLEYQNEQGEF 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G A +QHE DHL LF+D +S + + MI KK+ L + Sbjct: 120 VEEILEGFPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQALKKE 166 >gi|311898295|dbj|BAJ30703.1| putative polypeptide deformylase [Kitasatospora setae KM-6054] Length = 218 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 3/165 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L R R + + ++ LID+M + MY+ +G+GLAA QIGV ++ V Sbjct: 42 TARPITVVGNPVLHREVRTVTAFDGELSALIDDMFQSMYAAEGVGLAANQIGVDLKVFVY 101 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + QEGCLS+P ++ R + V D + Sbjct: 102 DCPDDEGVRHVGHVVNPVLEELPAGRRALDDSQEGCLSVPTAYQELARPDYAAVTGQDKD 161 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + G A CLQHE DHL G L+ID LS+ R ++M+ Sbjct: 162 GNPIRVEGTGFFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMA 206 >gi|300858540|ref|YP_003783523.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] gi|300685994|gb|ADK28916.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] Length = 169 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DP+L + + + ++ NL+ +MLE M + G+GLAA Q+GV R+ V Sbjct: 1 MTIRDIRFFGDPVLTMRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H INP +D + EGCLSIPD + D R + V D + Sbjct: 61 YDCS-HIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GL++ C+QHE DHL+G+LF+ L + R + + Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHRKDAMATIRQ 163 >gi|254388984|ref|ZP_05004215.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|326443292|ref|ZP_08218026.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|197702702|gb|EDY48514.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 41 TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + + V EGCLS+P A++ R + V D + Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 206 >gi|157962208|ref|YP_001502242.1| peptide deformylase [Shewanella pealeana ATCC 700345] gi|157847208|gb|ABV87707.1| peptide deformylase [Shewanella pealeana ATCC 700345] Length = 163 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 72/165 (43%), Positives = 100/165 (60%), Gaps = 5/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD L+R + P+ I + ID+++E MY TD GIGLAA Q+G L+ ++ Sbjct: 1 MAVLDILTIPDERLKRKAVPVTDI-ESVQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R PMV INP+I+ ++ +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSE--ERDQPMVLINPEIVESRGEYQ-GEEGCLSIPGYRAKVNRHEGVKVSALDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I D LA LQHE+DHLNG++F DHLS LK+ + KK+ K Sbjct: 117 KAFEIDTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKK 161 >gi|237747725|ref|ZP_04578205.1| peptide deformylase [Oxalobacter formigenes OXCC13] gi|229379087|gb|EEO29178.1| peptide deformylase [Oxalobacter formigenes OXCC13] Length = 178 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ D L R S P+++ N ++ LI++M E MY+ DG GLAA QIG+ R+V Sbjct: 1 MAVRKILKMGDSRLLRESEPVKQFNTPELNQLIEDMYETMYAADGAGLAAPQIGINQRVV 60 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + ++ + V INP I SD+ EGCLSIP R V R A I Sbjct: 61 IFGYDENNRYPDAPPVPKTVLINPVIRPLSDEIDAGWEGCLSIPGMRGIVPRWAKIHYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D ADG A +QHE DHL+GIL+ + L Sbjct: 121 FDQFGNKISRNADGFHARVVQHECDHLDGILYPFRIDDL 159 >gi|163738220|ref|ZP_02145636.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] gi|161388836|gb|EDQ13189.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] Length = 169 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 1/152 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +PDP+L ++PI ++ L +MLE MY+ G GLAA Q+GVL RL V Sbjct: 1 MAVLPIRAWPDPVLSTPAKPIATPG-NVETLARDMLETMYAAPGRGLAAPQVGVLIRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++P+V +NP I+ S + + EGCLSI +V R A++ + + D + Sbjct: 60 MDTTWKEGTRDPLVCVNPDIVALSVEMATMSEGCLSIKGVSLEVTRPAWVDLAWSDLHGV 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +G A C+QHE DHL G + D +S Sbjct: 120 RHQRRFEGFAAACVQHEYDHLEGRVTFDRVSP 151 >gi|163738221|ref|ZP_02145637.1| peptide deformylase [Phaeobacter gallaeciensis BS107] gi|161388837|gb|EDQ13190.1| peptide deformylase [Phaeobacter gallaeciensis BS107] Length = 165 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + + +I + + L +M++ M + G+GLAA QIGVL RL V Sbjct: 1 MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+I+ S ++E ++P A +KR +TVRYMD Sbjct: 61 VD--GSSERGRAVRLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETGA 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+ AT +QH++DHLNG ++ D LS++KRDM+ +K KL Sbjct: 119 TVERDFVGIEATSVQHQIDHLNGKMYFDKLSKVKRDMLIRKAKKL 163 >gi|258511303|ref|YP_003184737.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478029|gb|ACV58348.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 167 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR+ ++ + + I L+D+M E MY DGIGLAA QIG+L RLVV Sbjct: 1 MAIRIIRKGEDPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVV 60 Query: 61 IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ID+ +D ++ + +NP+I+ S +E CLS+P V+R+A++ VR + Sbjct: 61 IDVQPKEDSFQKRAWIELVNPEILERSG-VQREREACLSLPGLSGVVERAAYVRVRAQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + I LLA CLQHE+DHL+GILF D+L + Sbjct: 120 YGEFFEIEGRDLLARCLQHEIDHLDGILFTDYLRPEE 156 >gi|237736610|ref|ZP_04567091.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817] gi|229420472|gb|EEO35519.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817] Length = 169 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 4/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + + +LR V++ +E I+++I+ ++DNM+E M+ G+GLAA Q+G+ R+ V Sbjct: 1 MIYEIKKYGEAVLREVAQEVENIDNEILEILDNMVETMHEAKGVGLAAPQVGISKRMFVC 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D RK INP I +D ++EGCLS+P V+R I + Y++ + Sbjct: 61 DQGDGVVRK----VINPIITPMTDKLMDFEEGCLSVPGIYKKVQRPEKIKIDYLNEKGEK 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G LA +QHE DHL+ +LF+D +S + + MI KK+ L + Sbjct: 117 VSEEVEGFLAIIMQHEFDHLDAVLFVDKISPMAKRMINKKLQMLKKE 163 >gi|291301355|ref|YP_003512633.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] gi|290570575|gb|ADD43540.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] Length = 173 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 2/162 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V +L R R + + ++ L+D+M MY+ +G+GLAA QIGV R+ VI Sbjct: 8 TVHDIVYHGTEVLHRRCRTVTDFDDELARLVDDMFASMYAANGVGLAANQIGVDARVFVI 67 Query: 62 DLQDHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D +D + +NP + + +V EGCLS+P ADV R+ TV D Sbjct: 68 DCRDDDGGRLYGHIVNPTLREEPPPRELNVGPEGCLSVPGQYADVARTQTATVDGFDKTG 127 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + + G A CLQHE DHLNGI+++D L + R + + Sbjct: 128 KPITLTSTGEAARCLQHETDHLNGIVYVDKLPKKIRKRLLAE 169 >gi|328675276|gb|AEB27951.1| Peptide deformylase [Francisella cf. novicida 3523] Length = 172 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 94/170 (55%), Gaps = 5/170 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 1 MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 V+ D+ +NP + + +EGCLS P A V R+ + ++ ++ Sbjct: 61 VM--YDNLEEQNPEIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEF 118 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 119 GEEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 168 >gi|46581767|ref|YP_012575.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough] gi|120601080|ref|YP_965480.1| peptide deformylase [Desulfovibrio vulgaris DP4] gi|46451190|gb|AAS97835.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough] gi|120561309|gb|ABM27053.1| peptide deformylase [Desulfovibrio vulgaris DP4] gi|311232326|gb|ADP85180.1| peptide deformylase [Desulfovibrio vulgaris RCH1] Length = 171 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 101/168 (60%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PD L I++I DI L +M+E MY DGIGLAA Q+G RL+V+ Sbjct: 1 MIREVLKYPDERLAIECDDIDEITDDIRQLAADMVETMYREDGIGLAAPQVGANCRLIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ R++ M FINP++ D+ +EGCLS+P RA V+R + + D + Sbjct: 61 DVSGPEKRESLMTFINPRLEPLGDEKVESEEGCLSVPALRAKVERHERVRLTARDLDGNE 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA CLQHE+DHL G LFID +SRLKR + K+ K ++ R Sbjct: 121 VCMDADGLLAICLQHEIDHLGGTLFIDRISRLKRSLYDAKVKKWLKAR 168 >gi|146300287|ref|YP_001194878.1| peptide deformylase [Flavobacterium johnsoniae UW101] gi|189083071|sp|A5FGV5|DEF_FLAJO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146154705|gb|ABQ05559.1| peptide deformylase [Flavobacterium johnsoniae UW101] Length = 196 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+V I ++ I NM E MY+ G+GLAA Q+G+ R+ VI Sbjct: 1 MILPIVGYGDPVLRKVGTAITPDYPNLKETIANMYETMYNAYGVGLAAPQVGLPIRIFVI 60 Query: 62 DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + FIN KI+ + + EGCLSIPD R DV R Sbjct: 61 DTTPFSDDEDLPADEQKDLKGFKRTFINAKIVKEEGEEWSFNEGCLSIPDVREDVYRKPT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +T+ Y + + + DGL+A +QHE DH+ G+LF D +S LK+ +I KK+ + + + Sbjct: 121 VTIEYCEEDFVMKTEVFDGLIARVIQHEYDHIEGVLFTDKISSLKKRLIQKKLKNITEGK 180 >gi|300868003|ref|ZP_07112642.1| peptide deformylase [Oscillatoria sp. PCC 6506] gi|300334024|emb|CBN57820.1| peptide deformylase [Oscillatoria sp. PCC 6506] Length = 186 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 89/146 (60%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D LR+ ++ + ++++I L+ ML+ MYS +GIGLAA Q+ V +++V+D + Sbjct: 19 IHTLGDRALRQPAKRVASVDAEIRQLVREMLQTMYSAEGIGLAAPQVAVQKQVIVVDCEP 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+V INP I +S + V+QEGCLSIP +VKR I V Y D + Q + Sbjct: 79 DNAANPPLVLINPSIKKYSGEVCVFQEGCLSIPGVYLEVKRPEAIEVFYRDEYGRPQTLK 138 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 A LL+ +QHE+DHLNG+LF+D + Sbjct: 139 ATELLSRAIQHEMDHLNGVLFVDRVE 164 >gi|78778455|ref|YP_396567.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312] gi|123727935|sp|Q31DB4|DEF_PROM9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78711954|gb|ABB49131.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312] Length = 201 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ S+ I K++ I L M++ MY+ GIGLAA QIG+ L+VID+ Sbjct: 32 EIYKLGDDVLRQNSKRITKVDESIRKLTREMIQSMYAAKGIGLAAPQIGINKELLVIDVN 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INP+I + + Y+EGCLSIP +V R + I +++ D + + + Sbjct: 92 FEDSAAEPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHL---SRLKRDMITK 160 ADGLLA C+QHE+DHLNGILF+D + LK+++I + Sbjct: 152 KADGLLARCIQHEMDHLNGILFVDRVTSKDDLKKELIKE 190 >gi|332709623|ref|ZP_08429583.1| peptide deformylase [Lyngbya majuscula 3L] gi|332351656|gb|EGJ31236.1| peptide deformylase [Lyngbya majuscula 3L] Length = 187 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 58/145 (40%), Positives = 91/145 (62%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ ++ + K++ +I L + ML+ MYS DGIGLAA Q+G+ +++V+D + Sbjct: 19 IHYLGDRVLRQPAKRVAKVDQNIRKLAEQMLQTMYSADGIGLAAPQVGINKQMIVVDCEP 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P+V INP+I +F QEGCLSIP DV R I V Y D N + + + Sbjct: 79 NNQDNQPLVLINPEIKSFGSTPCDGQEGCLSIPGVYLDVTRPDEIEVAYKDQNGRPRTLK 138 Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150 A+GLL+ +QHE+DHL G++F+D + Sbjct: 139 ANGLLSRVIQHEIDHLKGVMFVDRV 163 >gi|317151959|ref|YP_004120007.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2] gi|316942210|gb|ADU61261.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2] Length = 165 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 1/164 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K + +PD +L + P+ +I ++ LI++M+E MY DG+GLAA Q+G RL+ + Sbjct: 1 MKLEICTWPDDVLAARAEPVAEITPEMKKLINDMVETMYEGDGVGLAAPQVGESIRLICV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D R + V INP+I+ + +EGCLS P++ V R + V MD + Sbjct: 61 DQTGPKLRADLRVLINPEIVECDGEVES-EEGCLSCPEFSGTVMRKERVKVTGMDPDGGP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 I DG LA LQHE+DHLNGI D RLK+ M K+ +K Sbjct: 120 VCIDTDGFLAIVLQHEIDHLNGITIADRAGRLKKAMYRKRAAKW 163 >gi|261409931|ref|YP_003246172.1| peptide deformylase [Paenibacillus sp. Y412MC10] gi|261286394|gb|ACX68365.1| peptide deformylase [Paenibacillus sp. Y412MC10] Length = 172 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 64/151 (42%), Positives = 100/151 (66%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG GLAA QIG+L RL+ Sbjct: 1 MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + + INP+I+ + + E CLS P Y VKR+ +TV+ ++ Sbjct: 61 VMDCGE-----GLIELINPEIVEMDGE-QMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Q I+ + LA C+QHE+DHLNGILF+DH+ Sbjct: 115 QTVILKGEDYLARCMQHEIDHLNGILFVDHV 145 >gi|225377871|ref|ZP_03755092.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM 16841] gi|225210309|gb|EEG92663.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM 16841] Length = 166 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+L ++ +P++++ LI++ML+ MY +G+GLAA Q+G+L R+VV Sbjct: 10 MALRTIRVQGDPVLEKICKPVKELTPRTKELIEDMLDTMYEANGVGLAAPQVGILKRIVV 69 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V +NP I+ S + EGCLSIP V R ++ V D N + Sbjct: 70 IDVGE-----GPVVMVNPVILETSGE-QTGDEGCLSIPGKAGQVTRPNYVKVHAFDENME 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I L+A + HE+DHL+G L+++ + Sbjct: 124 EYEIEGTELMARAMCHEIDHLDGHLYVEKVE 154 >gi|332799422|ref|YP_004460921.1| peptide deformylase [Tepidanaerobacter sp. Re1] gi|332697157|gb|AEE91614.1| Peptide deformylase [Tepidanaerobacter sp. Re1] Length = 154 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR + + + LI +MLE M + +G+GLAA Q+G+L R+VV Sbjct: 1 MALRNIREYGDEVLRKKSRNVTVFDKRLHTLILDMLETMMNANGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V +NP+I+ + + EGCLSIP +V R + + V+ D + Sbjct: 61 IDVGE-----GPIVLVNPEIVESKGE-VIEPEGCLSIPGILGEVPRPSRVKVKAQDKWGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHL G LF+D + Sbjct: 115 YIEIEGEDLLARALCHEIDHLEGKLFVDKAIKF 147 >gi|218130013|ref|ZP_03458817.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697] gi|317476772|ref|ZP_07936015.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA] gi|217987816|gb|EEC54142.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697] gi|316906947|gb|EFV28658.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA] Length = 184 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+VV+ Sbjct: 1 MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL ++ +IN I+ S + +EGCLS+P VKR I V+Y+D Sbjct: 61 DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +FIDHLS L++ MI K++ +++ + Sbjct: 121 EDLVEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNAMLKGK 173 >gi|320012174|gb|ADW07024.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331] Length = 169 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 66/144 (45%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + P L + + L+++M MY+ +G+GLAA QIGV R+ V D D Sbjct: 3 LLGAPALHSPCDDVTDFGPSLARLVEDMFATMYAANGVGLAANQIGVPLRVFVYDCPDDD 62 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 ++ +NP ++ D EGCLS+P A R V + I Sbjct: 63 EVRHLGHLVNPVLVEADGDTVRGPEGCLSLPGIEAGTPRFDRAVVEGRTVAGEPVRITGT 122 Query: 128 GLLATCLQHELDHLNGILFIDHLS 151 G A CLQHE DHL+G ++ D L+ Sbjct: 123 GWFARCLQHECDHLDGRVYTDRLT 146 >gi|254519243|ref|ZP_05131299.1| peptide deformylase [Clostridium sp. 7_2_43FAA] gi|226912992|gb|EEH98193.1| peptide deformylase [Clostridium sp. 7_2_43FAA] Length = 147 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 90/151 (59%), Gaps = 4/151 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D LR+ + + +I + LI++M + MY DG+GLAA Q+G+L R+ V Sbjct: 1 MAIRNIRQNGDEALRKKCKVVTEITPRTLKLIEDMADTMYEADGVGLAAPQVGILQRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + VFINP+I+ S + +EGCLS+P ADV+R ++ V+ ++ + Sbjct: 61 IDIYDDYGLR---VFINPEILEVSGS-QLGEEGCLSVPGEVADVERPNYVKVKALNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ A LLA + HE DHLNG LFID+L Sbjct: 117 EFVLEATELLARAILHENDHLNGTLFIDYLK 147 >gi|221640346|ref|YP_002526608.1| peptide deformylase [Rhodobacter sphaeroides KD131] gi|221161127|gb|ACM02107.1| Peptide deformylase [Rhodobacter sphaeroides KD131] Length = 167 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++PD L+ V+ P+E + +I + +M+E M + G GLAA QIGV+ RL V+ Sbjct: 1 MIRPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + + NP+I+ S F ++EG ++P A + R +TVR+++ + Sbjct: 61 DCSESRGKA--IRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGET 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + AT +QH++DHL+G L+ID LS LKR M+ K K ++ Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164 >gi|329924705|ref|ZP_08279720.1| peptide deformylase [Paenibacillus sp. HGF5] gi|328940539|gb|EGG36861.1| peptide deformylase [Paenibacillus sp. HGF5] Length = 172 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 100/151 (66%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG GLAA QIG+L RL+ Sbjct: 1 MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + + INP+I+ + + E CLS P Y VKR+ +TV+ ++ Sbjct: 61 VMDCGE-----GLIELINPEIVEMDGE-QMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I+ + LA C+QHE+DHLNGILF+DH+ Sbjct: 115 ETVILKGEDYLARCMQHEIDHLNGILFVDHV 145 >gi|134299560|ref|YP_001113056.1| peptide deformylase [Desulfotomaculum reducens MI-1] gi|134052260|gb|ABO50231.1| peptide deformylase [Desulfotomaculum reducens MI-1] Length = 152 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V D ILR ++P++++ +I L+DNM + MY +G+GLAA QIGV R++V Sbjct: 1 MAIYKIVEIGDEILREKAKPVKEVTPNIHKLLDNMADTMYEANGVGLAAPQIGVSKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INP+I+ S EGCLS+P+ +V R+ + V+ ++ + Sbjct: 61 VDIGE-----GLIELINPEIVEVSGHTVTDTEGCLSVPNMIGEVSRADKLVVKGLNRKGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A LA QHE+DHL GI+F+D S L++ Sbjct: 116 EVLYRAKDFLARAFQHEIDHLEGIIFVDKASNLRK 150 >gi|57238784|ref|YP_179920.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden] gi|58578709|ref|YP_196921.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden] gi|58616771|ref|YP_195970.1| peptide deformylase [Ehrlichia ruminantium str. Gardel] gi|57160863|emb|CAH57765.1| putative peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] gi|58416383|emb|CAI27496.1| Peptide deformylase [Ehrlichia ruminantium str. Gardel] gi|58417335|emb|CAI26539.1| Peptide deformylase [Ehrlichia ruminantium str. Welgevonden] Length = 181 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 12/176 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M LV PD L S + ++ +I L+D+M EVM++ +GIGLAAVQ+G+ R+ V Sbjct: 1 MSTLSLVTIPDHRLSLCSEEVTEVTQEIKKLVDDMFEVMHTNNGIGLAAVQVGIHKRIFV 60 Query: 61 IDLQ------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 D+ + P INPKI+ S + QEGCLS+PD V R Sbjct: 61 ADVPVDYKDHETIKTDGYKSHGGPYCMINPKIVDMSQEKVKMQEGCLSVPDCLEYVMRPK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++T++Y+D N II A G LA CL+HELDHLNGI+F+ +LS+ KRD+I +K+ K Sbjct: 121 YVTMQYLDYNGNKCIIKAQGWLARCLEHELDHLNGIVFLKYLSKFKRDLIVEKIRK 176 >gi|15605076|ref|NP_219861.1| peptide deformylase [Chlamydia trachomatis D/UW-3/CX] gi|76789079|ref|YP_328165.1| peptide deformylase [Chlamydia trachomatis A/HAR-13] gi|166154565|ref|YP_001654683.1| peptide deformylase [Chlamydia trachomatis 434/Bu] gi|166155440|ref|YP_001653695.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802778|ref|YP_002887972.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT] gi|237804700|ref|YP_002888854.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311158|ref|ZP_05353728.1| peptide deformylase [Chlamydia trachomatis 6276] gi|255317459|ref|ZP_05358705.1| peptide deformylase [Chlamydia trachomatis 6276s] gi|255506935|ref|ZP_05382574.1| peptide deformylase [Chlamydia trachomatis D(s)2923] gi|301335828|ref|ZP_07224072.1| peptide deformylase [Chlamydia trachomatis L2tet1] gi|6831532|sp|O84357|DEF_CHLTR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123606946|sp|Q3KM05|DEF_CHLTA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687417|sp|B0B7S2|DEF_CHLT2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687475|sp|B0BBY7|DEF_CHLTB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|3328774|gb|AAC67948.1| Polypeptide Deformylase [Chlamydia trachomatis D/UW-3/CX] gi|76167609|gb|AAX50617.1| peptide deformylase [Chlamydia trachomatis A/HAR-13] gi|83033878|gb|ABB97392.1| polypeptide deformylase [Chlamydia trachomatis] gi|83033880|gb|ABB97393.1| polypeptide deformylase [Chlamydia trachomatis] gi|165930553|emb|CAP04048.1| peptide deformylase [Chlamydia trachomatis 434/Bu] gi|165931428|emb|CAP07002.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273000|emb|CAX09912.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274012|emb|CAX10805.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT] gi|296435872|gb|ADH18046.1| peptide deformylase [Chlamydia trachomatis G/9768] gi|296436798|gb|ADH18968.1| peptide deformylase [Chlamydia trachomatis G/11222] gi|296437732|gb|ADH19893.1| peptide deformylase [Chlamydia trachomatis G/11074] gi|297140231|gb|ADH96989.1| peptide deformylase [Chlamydia trachomatis G/9301] Length = 181 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+V+ P+ +I ++ L+ +M E M G+GLAA Q+G L ++ Sbjct: 1 MIRDLEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 60 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P VFINP I S+ EGCLSIP R +V R ITV Sbjct: 61 GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167 + + Q + +G LA + HE DHL+G+L+ID +S + K + K+ + Sbjct: 121 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173 >gi|118496725|ref|YP_897775.1| peptide deformylase [Francisella tularensis subsp. novicida U112] gi|194324032|ref|ZP_03057807.1| peptide deformylase [Francisella tularensis subsp. novicida FTE] gi|208780004|ref|ZP_03247347.1| peptide deformylase [Francisella novicida FTG] gi|118422631|gb|ABK89021.1| peptide deformylase [Francisella novicida U112] gi|194321929|gb|EDX19412.1| peptide deformylase [Francisella tularensis subsp. novicida FTE] gi|208744008|gb|EDZ90309.1| peptide deformylase [Francisella novicida FTG] Length = 174 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 5/170 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 3 MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D+ +NP + + +EGCLS P A V R+ + ++ ++ Sbjct: 63 IM--YDNLEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 121 GDEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170 >gi|94987209|ref|YP_595142.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis PHE/MN1-00] gi|94731458|emb|CAJ54821.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis PHE/MN1-00] Length = 171 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 71/165 (43%), Positives = 105/165 (63%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PD L+++S ++ I DI NL M++ MY +GIGLAA Q+G L RL+V Sbjct: 1 MSLK-ILQYPDISLQKISLEVQDITQDIHNLAKQMVQTMYDANGIGLAAPQVGYLLRLIV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ + + +V INPKI D F +EGCLS+PDYR+ VKR A + + +D ++ Sbjct: 60 VDVSGPEQKSSLLVLINPKITPVIDSGFIEGEEGCLSVPDYRSKVKRHAKVLLDAIDLDS 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLL+ CLQHE+DHL+G LFID +S LKR + ++ K Sbjct: 120 NPVSFEAEGLLSVCLQHEIDHLDGKLFIDRVSYLKRKLYDGRLKK 164 >gi|110799951|ref|YP_696430.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|168210623|ref|ZP_02636248.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|168214221|ref|ZP_02639846.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|168217031|ref|ZP_02642656.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] gi|169342685|ref|ZP_02863726.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|110674598|gb|ABG83585.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|169299191|gb|EDS81261.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|170711284|gb|EDT23466.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|170714299|gb|EDT26481.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|182380902|gb|EDT78381.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] Length = 147 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L D ILR+ R ++ IN I L+++M+E MY +G+GLAA Q+G+L R+ V Sbjct: 1 MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLAAPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D A + VFINP+I+ S + +EGCLS+P VKR+ I ++ +D N Sbjct: 61 VDAMDGAGSR---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 ++ A+ LA +QHE DHL G+LFIDH Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145 >gi|303233917|ref|ZP_07320566.1| peptide deformylase [Finegoldia magna BVS033A4] gi|302494842|gb|EFL54599.1| peptide deformylase [Finegoldia magna BVS033A4] Length = 162 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 67/160 (41%), Positives = 95/160 (59%), Gaps = 3/160 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+ SR +EKI++ I + ++M E MY GIGLA VQ+G+L R+VV Sbjct: 1 MALRQIRLENDPILRKKSREVEKIDNRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD + MV INPKII S+D + EGCLS+P V+R + V Y D N Sbjct: 61 IDMQDEDGK---MVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 Q + A C HELDHL+G+L+ D + L + + + Sbjct: 118 TQRVTGTDYKAHCFCHELDHLDGVLYTDKVLNLSEEEVER 157 >gi|297748483|gb|ADI51029.1| Peptide deformylase [Chlamydia trachomatis D-EC] gi|297749363|gb|ADI52041.1| Peptide deformylase [Chlamydia trachomatis D-LC] Length = 191 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+V+ P+ +I ++ L+ +M E M G+GLAA Q+G L ++ Sbjct: 11 MIRDLEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 70 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P VFINP I S+ EGCLSIP R +V R ITV Sbjct: 71 GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 130 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167 + + Q + +G LA + HE DHL+G+L+ID +S + K + K+ + Sbjct: 131 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 183 >gi|157834784|pdb|2DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr, 20 Structures Length = 147 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 104/150 (69%), Gaps = 3/150 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VI Sbjct: 1 AVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 DVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ADGLLA C+QHE+DHL G LF+D+LS Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLS 147 >gi|284054434|ref|ZP_06384644.1| peptide deformylase [Arthrospira platensis str. Paraca] gi|291565688|dbj|BAI87960.1| peptide deformylase [Arthrospira platensis NIES-39] Length = 187 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 88/147 (59%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ ++ + +I+ +I L+ ML+ MYS DGIGLAA Q+GV +++VID + Sbjct: 18 DIHYLGDRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIVIDCE 77 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP I S + S +QEGCLSIP DV R + V + D N + + I Sbjct: 78 PDNAATPPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGRPRTI 137 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 A LL +QHE+DHL G+LF+D + Sbjct: 138 LATELLCRAIQHEIDHLQGVLFVDRVD 164 >gi|18310726|ref|NP_562660.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110802372|ref|YP_699030.1| peptide deformylase [Clostridium perfringens SM101] gi|23396559|sp|Q8XJL2|DEF1_CLOPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|18145407|dbj|BAB81450.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110682873|gb|ABG86243.1| peptide deformylase [Clostridium perfringens SM101] Length = 147 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L D ILR+ R ++ IN I L+++M+E MY +G+GLA+ Q+G+L R+ V Sbjct: 1 MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLASPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D A + VFINP+I+ S + +EGCLS+P VKR+ I ++ +D N Sbjct: 61 VDAMDGAGSR---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 ++ A+G LA +QHE DHL G+LFIDH Sbjct: 117 EFVLDAEGFLARAIQHEYDHLEGVLFIDH 145 >gi|330466981|ref|YP_004404724.1| peptide deformylase [Verrucosispora maris AB-18-032] gi|328809952|gb|AEB44124.1| peptide deformylase [Verrucosispora maris AB-18-032] Length = 186 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ LI ++ + M + G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDVELRKLIADLTDTMRDSAGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D +NP + + EGCLSIP D KR + + + Sbjct: 61 FDVDDVVG-----HLVNPVLEFPDAEEQDGPEGCLSIPGMYFDTKRRQNVIAKGFNGYGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I GL+A C+QHE DHL+G+LFID L R K + + D Sbjct: 116 PLQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKAIRQAEWYDD 165 >gi|182440102|ref|YP_001827821.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780771|ref|ZP_08240036.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1] gi|178468618|dbj|BAG23138.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661104|gb|EGE45950.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1] Length = 181 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 71/151 (47%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + DP+L R + + L+++M MY+ G+GLAA QIGV ++ V D Sbjct: 13 VREMSLLGDPLLHRPCEDVTDFGPPLAKLVEDMFATMYAAQGVGLAANQIGVPLKVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A R V + + Sbjct: 73 CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTDRFDHAVVEGLTMTGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I G A CLQHE DHL G ++ D L+ L Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYTDRLTGL 163 >gi|152981416|ref|YP_001353370.1| formylmethionine deformylase [Janthinobacterium sp. Marseille] gi|151281493|gb|ABR89903.1| formylmethionine deformylase [Janthinobacterium sp. Marseille] Length = 173 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L V+ P+++I DI L+ +M + MY+ DGIGLAA Q+ V +++V Sbjct: 1 MTRLSVLQYPDPRLYTVAEPVQQITQDIRRLVADMTQTMYALDGIGLAATQVDVHLQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R V INP I+ + Y+EGCLS+PD V+R+A+I VR +D + + Sbjct: 61 IDVSEKQNRLQ--VLINPTIVKM-GGKAEYEEGCLSVPDVFESVRRAAWIHVRALDLDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A+GL A C+QHE+DHL G++F++HLS + I +SK + Sbjct: 118 TIDVQAEGLKAMCIQHEMDHLQGMVFVEHLSPTNQRRILNSLSKQSR 164 >gi|167630201|ref|YP_001680700.1| peptide deformylase [Heliobacterium modesticaldum Ice1] gi|238687984|sp|B0TGS8|DEF_HELMI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167592941|gb|ABZ84689.1| peptide deformylase [Heliobacterium modesticaldum Ice1] Length = 151 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 85/151 (56%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ DP+LR ++P+ + NS++ LID+M + M + G+GLAA QIG+ R+ V Sbjct: 1 MAVYEILKMGDPVLREKAKPVTRFNSNLGRLIDDMFDTMAAARGVGLAAPQIGIGKRVCV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ K +NP+II + EGCLSIPDY VKR + V+ D + Sbjct: 61 VEVG-----KRRFELVNPEIIEAEGE-QCDAEGCLSIPDYTGRVKRFQRVRVKAQDRKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I LLA QHE+DHL+GILF+D + Sbjct: 115 TFIAEGTDLLAVAFQHEIDHLDGILFVDRVE 145 >gi|161511100|ref|NP_770645.2| peptide deformylase [Bradyrhizobium japonicum USDA 110] Length = 165 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV +PD L +RP+ + ++ L ++L+ M + GIG+ A IGV R+VV Sbjct: 1 MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + ++NP+I S + +++EG +S+P +V+R A + + Y D + Sbjct: 61 LELDAKDGAR---TYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q ++ L A C QHE+D L+G+ +I LSRLKR+ + KK K+ + Sbjct: 118 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKMSRG 165 >gi|325270161|ref|ZP_08136768.1| peptide deformylase [Prevotella multiformis DSM 16608] gi|324987462|gb|EGC19438.1| peptide deformylase [Prevotella multiformis DSM 16608] Length = 186 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 95/174 (54%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVI Sbjct: 1 MVLPIYTYGQPVLRKVAEDIPLDYPDLPELIQNMFETNTASDGVGLAAPQIGKSVRVVVI 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL ++ FIN I+ D + +EGCLS+P V R+ I V+Y+ Sbjct: 61 DLDVLSDTFPEYKDFRHAFINGHILELDDSETETMEEGCLSLPGIHESVTRAKRIHVKYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + + DG LA +QHE DHL G +F D LS +R MI+ K+ L+Q + Sbjct: 121 DEHLKEHDEWVDGYLARVIQHEFDHLEGRVFTDRLSAFRRQMISGKLKALLQGK 174 >gi|260424655|ref|ZP_05732837.2| peptide deformylase [Dialister invisus DSM 15470] gi|260402717|gb|EEW96264.1| peptide deformylase [Dialister invisus DSM 15470] Length = 161 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 4/150 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ DPIL+ V+ P+ + + L++ M + MY ++G+GLAA QI V R+ V D + Sbjct: 11 IITAGDPILKSVAMPVTAFDKKLKFLVNEMKKTMYESNGVGLAAPQIAVSKRVFVADDGE 70 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +INP+ D+ EGCLS+P++ +V+R A +TV+Y D + + + Sbjct: 71 SGFE----AYINPRWTPDGDEKVTDTEGCLSVPNWYGEVERYANVTVKYQDIHGKRKQKK 126 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLLA C+QHE DHLNGILFI+ + L + Sbjct: 127 ATGLLARCIQHETDHLNGILFIEKANSLHK 156 >gi|163743814|ref|ZP_02151187.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161382963|gb|EDQ07359.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] Length = 169 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 1/152 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +PDP+L ++PI D+ L +ML+ MY+ G GLAA Q+GVL RL V Sbjct: 1 MAVLPIRAWPDPVLSTPAKPIATP-RDVETLARDMLDTMYAAPGRGLAAPQVGVLIRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++P+V +NP I+ S + + EGCLSI +V R A++ + + D Sbjct: 60 MDTTWKEGTRDPLVCVNPDIVALSAETATMSEGCLSIKGVSLEVTRPAWVDLAWSDLQGV 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +G A C+QHE DHL G + D +S Sbjct: 120 RHQRRFEGFAAACVQHEYDHLEGRVTFDRVSP 151 >gi|154244580|ref|YP_001415538.1| peptide deformylase [Xanthobacter autotrophicus Py2] gi|154158665|gb|ABS65881.1| peptide deformylase [Xanthobacter autotrophicus Py2] Length = 168 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR V+ P+ + + NL+ ++L+ + + GIG+ A IG+ R+VV Sbjct: 1 MTARQIITFPDARLRSVAAPVTVFDDALANLVADLLDTLRAAPGIGITAPHIGIGKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +INP+I+ S + + EG +S+P +V+R A + VRY D + Sbjct: 61 LELSAEDGVR---AYINPQIVWASAELIRHAEGSVSMPGVTEEVERPARVHVRYQDLSGA 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGL A C QHE+D L+G+ +I LSRLKR+ + K+ K Sbjct: 118 EHLEEADGLRAVCHQHEIDQLDGVFWIQRLSRLKRERVIKRYEK 161 >gi|306845817|ref|ZP_07478385.1| peptide deformylase [Brucella sp. BO1] gi|306273709|gb|EFM55547.1| peptide deformylase [Brucella sp. BO1] Length = 164 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + D+ L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEDLRQLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELDRTAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|312880068|ref|ZP_07739868.1| peptide deformylase [Aminomonas paucivorans DSM 12260] gi|310783359|gb|EFQ23757.1| peptide deformylase [Aminomonas paucivorans DSM 12260] Length = 181 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 7/171 (4%) Query: 1 MVKK-PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K + +FPDP+LR + + + ++++ MY DG+GLAA Q+G+ ++ Sbjct: 15 MAKLLDICVFPDPVLRVPTEKVADFGPSFQSFLEDLWNTMYLRDGVGLAAPQVGISRKVT 74 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D Q V NP+I+ + +EGCLS P V R I +RY + Sbjct: 75 VVDAQGQ-----KFVLANPEILEREGETVA-EEGCLSFPGIFVPVLRPTRIRLRYQNERG 128 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LA HE+DHLNG L IDH+S L+R I +K+ K D Sbjct: 129 EPVEREVVDFLARVFSHEIDHLNGRLLIDHVSPLRRQFIQRKLRKAASEAD 179 >gi|218290476|ref|ZP_03494596.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1] gi|218239497|gb|EED06692.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1] Length = 167 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR+ ++ + + I L+D+M E MY DGIGLAA QIG+L RLVV Sbjct: 1 MAIRIIRKGEDPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVV 60 Query: 61 IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ID+ +D ++ + +NP+I+ S +E CLS+P V+R+A++ VR + Sbjct: 61 IDVQPKEDSFQKRAWIELVNPEIVARSG-VQREREACLSLPGLSGVVERAAYVRVRAQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + I LLA CLQHE+DHL+GILF D+L + Sbjct: 120 YGEFFEIEGRDLLARCLQHEIDHLDGILFTDYLRPEE 156 >gi|188589463|ref|YP_001920560.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43] gi|251778927|ref|ZP_04821847.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238689669|sp|B2V4B1|DEF_CLOBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188499744|gb|ACD52880.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43] gi|243083242|gb|EES49132.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 147 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ R +EKI+ ++ LI +MLE MY DG+GLAA Q+G+L RL + Sbjct: 1 MALRNIRKYGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D P+VFINP+I+ D V +EGCLS+P V R ++ R ++ + Sbjct: 61 VDIGD-----GPLVFINPEILDT-DGKQVDEEGCLSLPGKTEPVMRPNYVKARALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A+ LLA + HE DHLNG LFID ++ Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRTTK 146 >gi|282896056|ref|ZP_06304082.1| Polypeptide deformylase [Raphidiopsis brookii D9] gi|281198974|gb|EFA73849.1| Polypeptide deformylase [Raphidiopsis brookii D9] Length = 218 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 65/143 (45%), Positives = 89/143 (62%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I KI+ ++ LI +ML+ MYS DGIGLAA Q+GV +LVVID Sbjct: 50 LGDRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKP 109 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+V INP I S + V QEGCLSIP +VKR + + Y D + Q + AD Sbjct: 110 EIPPLVLINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADN 169 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA C+ HE+DHLNG++F+D + Sbjct: 170 LLARCILHEMDHLNGVVFVDRVE 192 >gi|320008651|gb|ADW03501.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331] Length = 212 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECSDVTEFGDELAQLIDDMFASQRTAEGVGLAANQIGVDRKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ NP + + + EGCLS+P A + R + VR D Sbjct: 96 DCPDDDGVRHVGAICNPVLEELAPERRNLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R K+M++ Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMAE 201 >gi|207091735|ref|ZP_03239522.1| peptide deformylase [Helicobacter pylori HPKX_438_AG0C1] Length = 175 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELSK 169 >gi|317011008|gb|ADU84755.1| peptide deformylase [Helicobacter pylori SouthAfrica7] Length = 174 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + + + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDEKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L D H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDDLQHKEDCLEIINPKWIETKGSL-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKILEASALLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|302542647|ref|ZP_07294989.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302460265|gb|EFL23358.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 42 TARPITVVGNPVLHKECQDVTEFDDELAALIDDMFASQRAAEGVGLAANQIGVDRKVFVY 101 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + D V EGCLS+P ++ R + VR D Sbjct: 102 DCLDDEGVRHVGVVCNPVLEELPADRRVLDDSNEGCLSVPTAYCELARPDYAVVRGQDAE 161 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R + ++M++ Sbjct: 162 GNPITVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDVLRQMAE 207 >gi|218510166|ref|ZP_03508044.1| peptide deformylase [Rhizobium etli Brasil 5] Length = 133 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 78/131 (59%), Positives = 102/131 (77%) Query: 39 MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98 MY GIGLAA+QIGV R++VID+ K P VFINP+I+ SD+ SVY+EGCLSIP Sbjct: 1 MYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIP 60 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 DY A+V+R A ++V+Y+D N + Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ Sbjct: 61 DYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMV 120 Query: 159 TKKMSKLVQLR 169 KK +K + + Sbjct: 121 IKKFTKAAKSK 131 >gi|329954514|ref|ZP_08295605.1| peptide deformylase [Bacteroides clarus YIT 12056] gi|328527482|gb|EGF54479.1| peptide deformylase [Bacteroides clarus YIT 12056] Length = 184 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+VV+ Sbjct: 1 MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL ++ +IN I+ S + +EGCLS+P VKR I V+Y+D Sbjct: 61 DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 EDLVEHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNAMLKGK 173 >gi|332666752|ref|YP_004449540.1| peptide deformylase [Haliscomenobacter hydrossis DSM 1100] gi|332335566|gb|AEE52667.1| Peptide deformylase [Haliscomenobacter hydrossis DSM 1100] Length = 183 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+ + I D+ LI +M E MY +G+GLAA QIG RL +I Sbjct: 1 MLLPIYAYGHPVLRKKAEDITPDYEDLSKLIADMWETMYHAEGVGLAAPQIGRPIRLFII 60 Query: 62 DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + VFIN + + Y+EGCLSIPD R DV R +T+RY+D Sbjct: 61 DSIQLEEKGKDVIGLKTVFINAEKVEEKGKIWAYEEGCLSIPDIRGDVDRLDTLTLRYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N I DG+ A +QHE DH+ GILF+++L +K+ MI ++ + + + Sbjct: 121 ENFVEHITTFDGINARVIQHEYDHIEGILFLEYLKPVKKAMIRGRLENIRKGK 173 >gi|168207271|ref|ZP_02633276.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|170661355|gb|EDT14038.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] Length = 147 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L D ILR+ R ++ IN I L+++M+E MY +G+GLAA Q+G+L R+ V Sbjct: 1 MAIRNLRFNDDEILRKKCRVVDDINDRIKILVEDMIETMYENNGVGLAAPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D A + VFINP+I+ S + +EGCLS+P VKR+ I ++ +D N Sbjct: 61 VDAMDGAGSR---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 ++ A+ LA +QHE DHL G+LFIDH Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145 >gi|4098215|gb|AAD09580.1| N-formylmethionylaminoacyl-tRNA deformylase [Helicobacter pylori] Length = 174 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIET-GGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|209965357|ref|YP_002298272.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] gi|209958823|gb|ACI99459.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] Length = 186 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 8/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+LRR ++P+E I + + +M+E M GIGLAA Q+ V +R+V Sbjct: 1 MAILKIARMGHPVLRRPAQPVETPIPAVVRQFALDMIETMVDAPGIGLAAPQVHVGWRIV 60 Query: 60 VIDLQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 V + P V +NP S++ EGCLSIP R V R A I Sbjct: 61 VFRVPGDRATGGAGDLPMEPQVLVNPAYEPLSEEMVEGWEGCLSIPGLRGVVPRFARIRY 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 R + + A G A +QHE+DHL+GIL+ID + L R T++M Sbjct: 121 RGLSLDGTAVEREASGTHARVVQHEIDHLDGILYIDRMPDLTRLTFTEEMR 171 >gi|149200572|ref|ZP_01877580.1| peptide deformylase [Lentisphaera araneosa HTCC2155] gi|149136344|gb|EDM24789.1| peptide deformylase [Lentisphaera araneosa HTCC2155] Length = 197 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 F +P+LR+V+ PI +IN +I L++ M++ MY +GIGLAA Q+G R+ VID Sbjct: 12 KFGNPVLRKVAEPISEINDEIRELVEEMVDTMYEENGIGLAAPQVGRSLRVFVIDTHFED 71 Query: 68 H-----------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 K P+ INP+II+ S + ++EGCLSIP A V R + I ++ Sbjct: 72 ETYGSDGEKLLCPKMPLALINPEIISTSGEDISFEEGCLSIPQINAAVVRPSNIVLKAQT 131 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL + C+QHE+DHL+G+LF D + ++ KK+ +L Sbjct: 132 LEGEIIEADFGGLTSRCMQHEIDHLDGVLFTDKAEKDDLKLVAKKLEQL 180 >gi|269956930|ref|YP_003326719.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] gi|269305611|gb|ACZ31161.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] Length = 164 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I I+ + +L+ ++LE + + GLAA QIGV R Sbjct: 4 MAMREIRVIPDPVLRTPCDEITTIDDRVRSLVADLLETVDAEGRAGLAANQIGVNLRAFS 63 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ D +NP+I+ D+ EGCLS+P R+A+ V +D + Sbjct: 64 WNIDDEVGY-----VLNPRIVALGDELQDGDEGCLSVPGLWYPTTRAAYARVEGIDLDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ GL+A CLQHE DHL+G L++D L R R +++ + Sbjct: 119 PVVVEGAGLMARCLQHECDHLDGKLYLDRLERSVRVRAMRELRE 162 >gi|99082418|ref|YP_614572.1| formylmethionine deformylase [Ruegeria sp. TM1040] gi|99038698|gb|ABF65310.1| formylmethionine deformylase [Ruegeria sp. TM1040] Length = 165 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 97/167 (58%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +I + +M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTTRTCLPWPDKRLRTKAAEVTEITDEIRAIWVDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+I+ S + ++E ++P A +KR +TVR+++ + Sbjct: 61 VD--GSSERGRAVRLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFLNEDGV 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ AT +QH++DHLNG ++ DHLS++KRDM+ KK KL + Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGKMYFDHLSKVKRDMLVKKARKLAR 165 >gi|318060209|ref|ZP_07978932.1| peptide deformylase [Streptomyces sp. SA3_actG] gi|318079746|ref|ZP_07987078.1| peptide deformylase [Streptomyces sp. SA3_actF] Length = 210 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 3/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + +P+L + + + ++ L+D+M + +G+GLAA Q+GV ++ V D Q Sbjct: 37 PITVVGNPVLHKECADVTEFGPELAKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDCQ 96 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ V NPK+ + EGCLS+P A R+ + V D + Sbjct: 97 DDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGNA 156 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L++D LS+ R K+M++ Sbjct: 157 IKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199 >gi|85375926|gb|ABC70185.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L HR++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHREDCLEIINPKWIET-GGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|145220094|ref|YP_001130803.1| peptide deformylase [Prosthecochloris vibrioformis DSM 265] gi|189083076|sp|A4SFP2|DEF_PROVI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145206258|gb|ABP37301.1| peptide deformylase [Chlorobium phaeovibrioides DSM 265] Length = 190 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 102/169 (60%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + D +L + ++P++ ++ + LID+M E M + GIGLAA Q+G RL+V+ Sbjct: 1 MILPITTYTDEVLHQTAKPLKGVDGAVEELIDSMFESMENASGIGLAAPQVGHSLRLLVL 60 Query: 62 DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D+ ++ PMV INP I++ ++ +EGCLS+P + DV+R + IT++Y D N Sbjct: 61 DISCMKSYEDVAPMVVINPHILSVKG-KNLMEEGCLSVPGVQGDVQRPSSITLKYRDRNF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q G+LA LQHE+DHL+G LFID + + R I K++ + + Sbjct: 120 LEQTEEFSGMLARVLQHEIDHLSGTLFIDRMEKRDRRKIQKELDDIAKG 168 >gi|297379991|gb|ADI34878.1| peptide deformylase [Helicobacter pylori v225d] Length = 175 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 105/170 (61%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+ + Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMFI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFFEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEMDHLNGVLFVDKLSILKRKKFEKELKELNK 169 >gi|294814920|ref|ZP_06773563.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|294327519|gb|EFG09162.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 3/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 41 TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + + V EGCLS+P A++ R + V D + Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + G A CLQHE DHL G L+ID LS+ R ++M Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQM 204 >gi|254510887|ref|ZP_05122954.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] gi|221534598|gb|EEE37586.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] Length = 164 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I DI + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MSVRTCLPWPDKRLRTKAGDVTEITDDIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+I+ S + ++E ++P A VKR +TV++++ Q Sbjct: 61 VD--GSTERGKAVRLANPEILHSSVELREHEEASPNLPGVSAKVKRPRAVTVKFLNEQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G+ AT +QH++DHLNG ++ D LS++KRDM+ +K K Sbjct: 119 IDHRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKK 162 >gi|85700133|gb|ABC74516.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIET-GGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSVLKRKKFEKELKELQK 169 >gi|227484652|ref|ZP_03914968.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172] gi|227237372|gb|EEI87387.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172] Length = 161 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 66/149 (44%), Positives = 95/149 (63%), Gaps = 3/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DPILR++SRP+E + I L+D+M E MY+ DG+GLAA Q+G L R++V Sbjct: 1 MAIRNIRIDGDPILRKISRPVEDVTDRIRILLDDMAETMYAADGVGLAAPQVGNLRRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +D + + +NP+I+ + + EGCLSIPD+ A VKR + V+Y+D N + Sbjct: 61 VDPRD--GEDSLVKLVNPEILEMDGE-QIGVEGCLSIPDFNATVKRPEHVKVKYLDENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 +I A G A L HE+DHLNGILF D Sbjct: 118 EKIWDAHGFPAVILCHEIDHLNGILFKDK 146 >gi|119963025|ref|YP_947573.1| peptide deformylase [Arthrobacter aurescens TC1] gi|119949884|gb|ABM08795.1| peptide deformylase [Arthrobacter aurescens TC1] Length = 190 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 7/164 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR V+ P+ ++ L+ +M E M +G GLAA Q+GV R+ Sbjct: 1 MAILSIRIIGDPVLRTVADPVTDFGPELAKLVADMTETMEDVEGAGLAAPQVGVSQRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNA 119 + INP + S+D+ + EGCLSIP V+R +D N Sbjct: 61 YRIGGVEG-----HIINPVL-ENSEDYQPDEVEGCLSIPGLGFPVRRYRATRATGVDLNG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + A+G+LA C QHE DHL+G+L+ D L R + + Sbjct: 115 NPVSVEAEGMLARCFQHETDHLDGVLYTDRLEGDDRKAALRAIR 158 >gi|325849091|ref|ZP_08170583.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480336|gb|EGC83399.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 153 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 99/148 (66%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR+ S+ ++++N I L+D+M E MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++D + +NP+II + V EGCLS+P++ A+VKR A + V+Y+D N + Sbjct: 61 VDIRDEDG---LIKLVNPEIIEKDGE-QVGVEGCLSVPNFNANVKRPAHVIVKYLDENGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + I A+GL A L HE+DHLNG+LFID Sbjct: 117 EKKIEAEGLKAVALCHEIDHLNGVLFID 144 >gi|294673344|ref|YP_003573960.1| peptide deformylase [Prevotella ruminicola 23] gi|294473242|gb|ADE82631.1| peptide deformylase [Prevotella ruminicola 23] Length = 186 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ IF P+LR+V+ I + +LI +M E + ++GIGLAA QIG RLVVI Sbjct: 1 MILPIYIFGQPVLRKVAEDITPDYPQLKDLIGDMWETLAESEGIGLAAPQIGKPIRLVVI 60 Query: 62 DLQD-----HAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL ++ VFIN I+ + + V +EGCLSIP V R I V + Sbjct: 61 DLDVLSDDLPEYKGFKQVFINAHIVEYDESNTDVSEEGCLSIPAIHEKVTRPTRIHVEWD 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N +H + +G LA +QHE DHL+G +F+D +S L++ +I K+ L Q R Sbjct: 121 DENFEHHDEWVEGYLARVMQHEFDHLDGKMFVDRISPLRKQLIKSKLRALTQGR 174 >gi|217034160|ref|ZP_03439580.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10] gi|216943444|gb|EEC22900.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10] gi|317182103|dbj|BAJ59887.1| peptide deformylase [Helicobacter pylori F57] Length = 175 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169 >gi|85700129|gb|ABC74514.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIET-GGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|89255517|ref|YP_512878.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115314036|ref|YP_762759.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|187930952|ref|YP_001890936.1| peptide deformylase [Francisella tularensis subsp. mediasiatica FSC147] gi|224457894|ref|ZP_03666367.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|254366945|ref|ZP_04982982.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] gi|290954254|ref|ZP_06558875.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|89143348|emb|CAJ78515.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115128935|gb|ABI82122.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|134252772|gb|EBA51866.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] gi|187711861|gb|ACD30158.1| peptide deformylase [Francisella tularensis subsp. mediasiatica FSC147] gi|282159936|gb|ADA79327.1| peptide deformylase [Francisella tularensis subsp. tularensis NE061598] Length = 172 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 5/170 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 1 MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D+ +NP + + +EGCLS P A V R+ + ++ ++ Sbjct: 61 IM--YDNLEEQNPEIITIINPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEF 118 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 119 GEEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 168 >gi|222086074|ref|YP_002544606.1| peptide deformylase [Agrobacterium radiobacter K84] gi|221723522|gb|ACM26678.1| peptide deformylase [Agrobacterium radiobacter K84] Length = 164 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPDP+L+ P+ + + +L ++++ M + G+G+ A IGVL R+ V Sbjct: 1 MSVRSIIRFPDPLLKTTCAPVTIFDDGLHSLAIDLVDTMRAAPGVGITAAHIGVLRRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+L + +INP+I FS++ + EG +S+P +V R I RY D + + Sbjct: 61 IELSREDGIR---TYINPEITWFSEETMRHMEGSVSMPGITDEVVRPRAIRFRYQDIDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+G+ ++ LS+LKRD + KK K Sbjct: 118 AHEAAAEDFLAICIQHEVDQLDGLFWLQRLSKLKRDRLVKKWEK 161 >gi|290968494|ref|ZP_06560033.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L] gi|290781490|gb|EFD94079.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L] Length = 171 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 K ++ +P+L+ ++P+ I I L+D+M E MY +G+GLAA QI RL+V+ Sbjct: 19 AKLNIIKAGNPVLKAAAKPVPVITKHIKKLLDDMAETMYKANGVGLAAPQINESLRLIVL 78 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + INP+I+ S + EGCLS+P Y V R + I V+ ++ + Sbjct: 79 D-----DGNGLIELINPEILETSTEMEEDTEGCLSVPGYYGIVSRYSKIKVKALNRRGKT 133 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + LA QHE+DHLNGILFI+ +++ Sbjct: 134 VYYEPEHFLARIFQHEIDHLNGILFIEKAKNIRK 167 >gi|256544906|ref|ZP_05472277.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170] gi|256399405|gb|EEU13011.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170] Length = 154 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 66/148 (44%), Positives = 98/148 (66%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR+ S+ ++++N I L+D+M E MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++D + +NP+II + V EGCLS+P++ A+VKR A + V+Y+D N Sbjct: 61 VDVRDEDG---LIKLVNPEIIEKDGE-QVGVEGCLSVPNFNANVKRPAHVVVKYLDENGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + I A+GL A L HE+DHLNGILFID Sbjct: 117 EKKIEAEGLKAVALCHEIDHLNGILFID 144 >gi|332559343|ref|ZP_08413665.1| peptide deformylase [Rhodobacter sphaeroides WS8N] gi|332277055|gb|EGJ22370.1| peptide deformylase [Rhodobacter sphaeroides WS8N] Length = 167 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 96/166 (57%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++PD L+ V+ P+E + +I + +M+E M + G GLAA QIGV+ RL V+ Sbjct: 1 MIRPFVMYPDKRLKTVAAPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + + NP+I+ S F ++EG ++P A + R +TV +++ + Sbjct: 61 DCSESRGKA--IRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVHFLNEAGET 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + AT +QH++DHL+G L+ID LS LKR M+ K K ++ Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164 >gi|255282544|ref|ZP_05347099.1| peptide deformylase [Bryantella formatexigens DSM 14469] gi|255266837|gb|EET60042.1| peptide deformylase [Bryantella formatexigens DSM 14469] Length = 162 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D +L + + ++++ I LID+M + MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRNVRIQGDKVLEKKCKEVKEVTPRIRTLIDDMFDTMYEEGGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + P V INP I S + EGCLS+P V R ++ VR D N Q Sbjct: 61 IDTTG----EEPHVLINPVIEETSGE-QRGYEGCLSLPGKSGIVTRPNYVRVRAFDENMQ 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ LLA + HE DHL GI++ + Sbjct: 116 EYVLEGTELLARAICHECDHLEGIMYTSKVE 146 >gi|300780403|ref|ZP_07090259.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] gi|300534513|gb|EFK55572.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] Length = 200 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 7/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P+VI DP+L + P+ + +++ LI +M E M + +G+GLAA QIGV RL V Sbjct: 12 MIRPIVIHGDPVLHTPTEPVTEPVAELKELIADMHETMDAANGVGLAANQIGVNKRLFVY 71 Query: 62 DLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + V INP + T D EGCLS+P R+ + V + Sbjct: 72 HCPDGDTMRRGTV-INPVLETSDIPKTMPKDDGEDDEGCLSVPGESFPTARAEWAKVTGL 130 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N + G A CLQHE+ HL+G +++D L+ + + + Sbjct: 131 DENGDPVEVEGTGFFARCLQHEVGHLDGYVYLDVLTGRYKREAKRAVKA 179 >gi|163743815|ref|ZP_02151188.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161382964|gb|EDQ07360.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] Length = 165 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + + +I + + L +M++ M + G+GLAA QIGVL RL V Sbjct: 1 MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R + NP+I+ S ++E ++P A +KR +TVRYMD Sbjct: 61 ID--GSSERGRAVRLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETGA 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+ AT +QH+LDHLNG ++ D LS++KRDM+ +K KL Sbjct: 119 TVERDFVGIEATSVQHQLDHLNGKMYFDKLSKVKRDMLIRKAKKL 163 >gi|317014203|gb|ADU81639.1| peptide deformylase [Helicobacter pylori Gambia94/24] Length = 174 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 62/172 (36%), Positives = 107/172 (62%), Gaps = 4/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETKGSI-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171 >gi|56708685|ref|YP_170581.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110671157|ref|YP_667714.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] gi|134302737|ref|YP_001122705.1| peptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|156501451|ref|YP_001427516.1| peptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010290|ref|ZP_02275221.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC200] gi|254368481|ref|ZP_04984498.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC022] gi|254371316|ref|ZP_04987318.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC033] gi|254875560|ref|ZP_05248270.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|295312318|ref|ZP_06803105.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|56605177|emb|CAG46308.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321490|emb|CAL09691.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] gi|134050514|gb|ABO47585.1| Peptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|151569556|gb|EDN35210.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC033] gi|156252054|gb|ABU60560.1| peptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121375|gb|EDO65576.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC022] gi|254841559|gb|EET19995.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] Length = 174 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 5/170 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 3 MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D+ +NP + + +EGCLS P A V R+ + ++ ++ Sbjct: 63 IM--YDNLEEQNPEIITIINPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 121 GEEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170 >gi|157830807|pdb|1DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr, 9 Structures gi|256599481|pdb|2KMN|A Chain A, Solution Structure Of Peptide Deformylase Complexed With Actinonin Length = 147 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 104/149 (69%), Gaps = 3/149 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID Sbjct: 2 VLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVID 61 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 62 VSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 118 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + ADGLLA C+QHE+DHL G LF+D+LS Sbjct: 119 ELEADGLLAICIQHEMDHLVGKLFMDYLS 147 >gi|322378951|ref|ZP_08053365.1| peptide deformylase [Helicobacter suis HS1] gi|322379805|ref|ZP_08054102.1| peptide deformylase [Helicobacter suis HS5] gi|321147773|gb|EFX42376.1| peptide deformylase [Helicobacter suis HS5] gi|321148627|gb|EFX43113.1| peptide deformylase [Helicobacter suis HS1] Length = 172 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 102/167 (61%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M LV +PD LR +S +E ++ + L+++M E M + GIGLAA+Q+GV R+++ Sbjct: 2 MAILDLVHYPDKRLRGLSTEVEVFDTALHTLLEDMQETMLANKGIGLAAIQVGVAKRILI 61 Query: 61 IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L ++ P + INP ++ ++ +++EGCLS+P++ +++R A + + Y D Sbjct: 62 INLPRQDEQQYPEDCLEIINPTLL-HAEGQILWREGCLSVPEFYEEIQRFARVKLAYCDR 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + A LL+ +QHE+DHLNGILF+D LS LKR K+ K Sbjct: 121 YGDPQELQASDLLSVAIQHEIDHLNGILFVDRLSMLKRKKFEKEFRK 167 >gi|282900896|ref|ZP_06308832.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii CS-505] gi|281194234|gb|EFA69195.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii CS-505] Length = 190 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 64/143 (44%), Positives = 89/143 (62%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I KI+ ++ LI +ML+ MYS DGIGLAA Q+GV +LVVID Sbjct: 22 LGDRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKP 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P++ INP I S + V QEGCLSIP +VKR + + Y D + Q + AD Sbjct: 82 EMPPLILINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADN 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA C+ HE+DHLNG++F+D + Sbjct: 142 LLARCILHEMDHLNGVVFVDRVE 164 >gi|78778228|ref|YP_394543.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251] gi|78498768|gb|ABB45308.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251] Length = 178 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 63/171 (36%), Positives = 104/171 (60%), Gaps = 4/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K +V +PD L+ S+ +EK + ++ L++ M M ++GIGLAA+Q+G +++++ Sbjct: 1 MKLTIVEYPDKRLKEKSKIVEKFDEELHKLLEAMYASMIESNGIGLAAIQVGYAKQVLLL 60 Query: 62 DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D R + + INP IIT S+ ++YQEGCLS+P + DV R + V Y D Sbjct: 61 NIPDDNDEQSRDSLIEMINP-IITQSEGETIYQEGCLSVPSFYEDVSRFERVCVNYQDRE 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I A GLL+ +QHE+DHL+G+LFID LS +R K+ K+ + + Sbjct: 120 GNTKTIEATGLLSVAIQHEIDHLHGVLFIDKLSYSRRKKFEKEYKKVQKEK 170 >gi|89098706|ref|ZP_01171588.1| peptide deformylase [Bacillus sp. NRRL B-14911] gi|89086668|gb|EAR65787.1| peptide deformylase [Bacillus sp. NRRL B-14911] Length = 181 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +P IL + + + ++ L+++M + M DG+GLAA QIG+ R+ V+ Sbjct: 22 AVRKIVTYPAEILEEPCETVTEFDKKLVKLLNDMYDTMIEFDGVGLAAPQIGIRKRIAVV 81 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ D INP+II + EGCLS P +V R + ++ D + Sbjct: 82 DIDDENGTIE---LINPEIIETGGE-QTGPEGCLSFPGLYGEVTRPFTVKIKAQDRKGKS 137 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + AD LA +QHE+DHL+G+LF ++R Sbjct: 138 FTLEADDFLARAIQHEIDHLDGVLFTSKVNR 168 >gi|217032886|ref|ZP_03438363.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128] gi|298736496|ref|YP_003729022.1| peptide deformylase [Helicobacter pylori B8] gi|216945380|gb|EEC24048.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128] gi|298355686|emb|CBI66558.1| peptide deformylase [Helicobacter pylori B8] Length = 174 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKWIET-GGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|317178847|dbj|BAJ56635.1| peptide deformylase [Helicobacter pylori F30] Length = 175 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169 >gi|291450059|ref|ZP_06589449.1| polypeptide deformylase [Streptomyces albus J1074] gi|291353008|gb|EFE79910.1| polypeptide deformylase [Streptomyces albus J1074] Length = 215 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 75/146 (51%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + + L++++ MY+ G+GLAA QIGV R+ V D Sbjct: 45 VRPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHD 104 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D R++ +NP+++ EGCLS+P A +R V +D + + Sbjct: 105 CPDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPR 164 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 ++ G A CLQHE DHL+G L++D Sbjct: 165 TVHGTGFFARCLQHESDHLDGTLYVD 190 >gi|282863154|ref|ZP_06272214.1| peptide deformylase [Streptomyces sp. ACTE] gi|282562136|gb|EFB67678.1| peptide deformylase [Streptomyces sp. ACTE] Length = 166 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 63/141 (44%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + DP+L + + L+++M MY+ G+GLAA QIGV R+ V D D Sbjct: 3 LLGDPVLHSPCEEVTDFGPSLARLVEDMFATMYAAHGVGLAANQIGVPLRVFVYDCPDDD 62 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 ++ +NP + EGCLS+P A R V + + Sbjct: 63 EVRHLGHLVNPVCVEADGITVRGPEGCLSLPGLEAGTPRFDRTVVEGRTVTGEPVRVTGT 122 Query: 128 GLLATCLQHELDHLNGILFID 148 G A CLQHE DHL+G ++ D Sbjct: 123 GWFARCLQHECDHLDGTVYPD 143 >gi|295100691|emb|CBK98236.1| peptide deformylase [Faecalibacterium prausnitzii L2-6] Length = 178 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G+L R+ V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRVFV 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P + F+NP+I+ S+D EGCLS P + V R + VR Sbjct: 61 VWDTTDAPEEIPENYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D N + + A+GLLA C+QHE DHL+GI ++ Sbjct: 121 AQDRNGEWFELEAEGLLARCIQHENDHLDGITIME 155 >gi|323359861|ref|YP_004226257.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] gi|323276232|dbj|BAJ76377.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] Length = 188 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 5/174 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L + +++I ++ L+ +M E M + G+GLAA Q+GV R+ Sbjct: 1 MAVLPIRIMGDPVLHAPAARVDEITEEVRTLVADMFETMDAAPGVGLAAPQVGVGLRIFT 60 Query: 61 IDLQDHAHRKNPMVFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +D V INP+ + D EGCLS P R ++RS + + Sbjct: 61 YTYEDDEGLPWRGVVINPELWIRPLEPGYPDPDDESEGCLSFPGERFPLRRSDAALLTGV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + I G A LQHE DHL+GIL++D L ++ K K + Sbjct: 121 DLDGRPVRIEVTGWRARILQHEFDHLDGILYVDRLDDEDSRVVAKIAKKRKWGK 174 >gi|312793226|ref|YP_004026149.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876962|ref|ZP_07736937.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A] gi|311796277|gb|EFR12631.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A] gi|312180366|gb|ADQ40536.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 166 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 101/169 (59%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+I S+ +V EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGA-----IELVNPEI-EHSEGSAVDVEGCLSVPNVWGEVERPQKVIVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL-KRDMITKKMSKLVQL 168 + A+GLLA + HE+DHL+GILF+D + R + I ++ SK ++ Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSKGEKM 163 >gi|255348717|ref|ZP_05380724.1| peptide deformylase [Chlamydia trachomatis 70] gi|255503257|ref|ZP_05381647.1| peptide deformylase [Chlamydia trachomatis 70s] gi|289525394|emb|CBJ14871.1| peptide deformylase [Chlamydia trachomatis Sweden2] gi|296434946|gb|ADH17124.1| peptide deformylase [Chlamydia trachomatis E/150] gi|296438666|gb|ADH20819.1| peptide deformylase [Chlamydia trachomatis E/11023] Length = 181 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PIL +V+ P+ +I ++ L+ +M E M G+GLAA Q+G L ++ Sbjct: 1 MIRDLEYYDSPILHKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 60 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P VFINP I S+ EGCLSIP R +V R ITV Sbjct: 61 GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167 + + Q + +G LA + HE DHL+G+L+ID +S + K + K+ + Sbjct: 121 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173 >gi|149194678|ref|ZP_01871773.1| peptide deformylase [Caminibacter mediatlanticus TB-2] gi|149135101|gb|EDM23582.1| peptide deformylase [Caminibacter mediatlanticus TB-2] Length = 173 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 101/161 (62%), Gaps = 4/161 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P+ IL+++S+P+E+ +S++ L+D+M E M + +GIGLAA+Q+GV R ++ Sbjct: 1 MAILDIVTYPNKILKQISKPVERFDSELHKLLDDMYETMIAKNGIGLAAIQVGVPIRALL 60 Query: 61 IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 IDL D +++ + INP+ + + Y EGCLS+PDY +V+R + V++ D Sbjct: 61 IDLGDEEGKQSKDTLIEVINPEFLEWDGSL-KYNEGCLSVPDYFDEVERYKKVKVKFFDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + I+ A+ LL+ QHE DHL+G +FI+ L +KR Sbjct: 120 FGKEHIVDAEDLLSVAFQHETDHLDGHVFIERLDYIKRKKF 160 >gi|77464454|ref|YP_353958.1| formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1] gi|77388872|gb|ABA80057.1| Formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1] Length = 167 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 98/166 (59%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++PD L+ V+ P+E + +I + +M+E M + G GLAA QIGV+ RL V+ Sbjct: 1 MIRPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ + + NP+I+ S F ++EG ++P A + R +TVR+++ + Sbjct: 61 DCSENRGKA--IRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGEI 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + AT +QH++DHLNG L+ID LS LKR M+ K K ++ Sbjct: 119 EERDFVDIWATSVQHQIDHLNGRLYIDRLSPLKRKMVVAKSEKYLR 164 >gi|302533115|ref|ZP_07285457.1| peptide deformylase [Streptomyces sp. C] gi|302442010|gb|EFL13826.1| peptide deformylase [Streptomyces sp. C] Length = 182 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 72/149 (48%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P+ + +P+L + ++ LI++M MY+ G+GLAA QIG R+ V D Sbjct: 13 VRPMTLLGEPVLHSPCAEVTDFGPELDRLIEDMFATMYAAQGVGLAANQIGTGLRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ D EGCLS+P A R V + + Sbjct: 73 CPDDEDVRHVGHVVNPRLVEADGDEFRGPEGCLSLPGLEAGTVRFDRAVVEGVTSDGAPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + G A CLQHE DHL+G ++ D ++ Sbjct: 133 RVEGTGFFARCLQHECDHLDGTVYADRVT 161 >gi|297157414|gb|ADI07126.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 209 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + R + + + + LID+M + +G+GLAA QIGV ++ V Sbjct: 33 TARPITVVGNPVLHKECRDVTEFDDKLAALIDDMFASQKAAEGVGLAANQIGVALKVFVY 92 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + D V EGCLS+P A + R + VR D Sbjct: 93 DCPDDDGVRHVGVVCNPVLDELPADRRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAE 152 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 153 GKPIAVQGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 198 >gi|85700137|gb|ABC74518.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 107/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+MLE M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMLETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|302521840|ref|ZP_07274182.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|302430735|gb|EFL02551.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 210 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 3/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + +P+L + + + ++ L+D+M + +G+GLAA Q+GV ++ V D Q Sbjct: 37 PITVVGNPVLHKECADVTEFGPELTKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDCQ 96 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ V NPK+ + EGCLS+P A R+ + V D + Sbjct: 97 DDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGNA 156 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L++D LS+ R K+M++ Sbjct: 157 IKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199 >gi|118443183|ref|YP_878318.1| peptide deformylase [Clostridium novyi NT] gi|118133639|gb|ABK60683.1| peptide deformylase [Clostridium novyi NT] Length = 150 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ R +E+IN I+ LI++M E MY DG+GLAA Q+G+L RLVV Sbjct: 1 MALRNIRVEEDSILRKKCREVEEINDRILTLIEDMKETMYEADGVGLAAPQVGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+II S+ EGCLS+P + V R +T + ++ + Sbjct: 61 IDVGE-----GPITLINPEIIE-SEGSQTDYEGCLSLPGKQGKVTRPYKVTAKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 I +GLLA + HELDHL+G LFID + Sbjct: 115 PVEIKGEGLLARAICHELDHLDGTLFIDKV 144 >gi|21223589|ref|NP_629368.1| polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|256785300|ref|ZP_05523731.1| polypeptide deformylase [Streptomyces lividans TK24] gi|289769194|ref|ZP_06528572.1| polypeptide deformylase [Streptomyces lividans TK24] gi|23396574|sp|Q9K4A0|DEF4_STRCO RecName: Full=Peptide deformylase 4; Short=PDF 4; AltName: Full=Polypeptide deformylase 4 gi|8546887|emb|CAB94606.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|289699393|gb|EFD66822.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 216 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECEDVTDFGEEFQQLVADMFASQRTAEGVGLAANQIGVSKKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP+++ D EGCLS+P A + R + V D Sbjct: 100 DCPDDEGVRHVGVVCNPRLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|218439032|ref|YP_002377361.1| peptide deformylase [Cyanothece sp. PCC 7424] gi|218171760|gb|ACK70493.1| peptide deformylase [Cyanothece sp. PCC 7424] Length = 187 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 88/146 (60%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ ++ I K++ + L ML+ MYS++GIGLAA Q+ V +L+VID + Sbjct: 18 EIHYLGDRVLRQPAKRIAKVDESVRQLAKEMLQTMYSSNGIGLAAPQVAVNKQLLVIDCE 77 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INP+I S + ++EGCLSIP DV R I V Y D + + + + Sbjct: 78 PDNPANPPLILINPQITQSSQELCQFEEGCLSIPGVYLDVVRPKVIEVSYKDESGRPKKL 137 Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150 A LLA +QHE+DHLNGI+F+D + Sbjct: 138 KATDLLARVIQHEMDHLNGIMFVDRV 163 >gi|296273945|ref|YP_003656576.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299] gi|296098119|gb|ADG94069.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299] Length = 170 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 4/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ +LR S+ + K + ++ L+D+M E M + G+GLAA+Q+ V +++I Sbjct: 1 MVREVITYPNKLLREKSKDVVKFDDELHTLLDDMYETMIAQSGVGLAAIQVAVPLNVLII 60 Query: 62 DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D + + + INPKI T D V+ EGCLS+P + DVKR+ I V Y D Sbjct: 61 LIPDENDIQAKDSLIEAINPKI-THKDGIQVFTEGCLSVPGFNEDVKRAQHIIVEYQDRF 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +Q + + LA QHE+DHL G LFI+ LS +KR K+ K + + Sbjct: 120 GNNQKMETEDFLAVAWQHEMDHLEGHLFIEKLSLMKRKKFEKEYKKSQKSK 170 >gi|116252298|ref|YP_768136.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841] gi|115256946|emb|CAK08040.1| putative peptide deformylase [Rhizobium leguminosarum bv. viciae 3841] Length = 164 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ +S + L +++L M + G+G+ A IGV R+ V Sbjct: 1 MPIRPILRYPHPGLKTVCAPVTVFDSSLTALAEDLLATMRAAPGVGITAAHIGVFSRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + ++ NP I FS + + EG +S+P +V R I RY D Sbjct: 61 LELDKADGVR---LYFNPHITWFSKETMDHTEGSVSMPGATDEVTRPRAIRFRYQDAEGA 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 VHEDGAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161 >gi|302558503|ref|ZP_07310845.1| peptide deformylase [Streptomyces griseoflavus Tu4000] gi|302476121|gb|EFL39214.1| peptide deformylase [Streptomyces griseoflavus Tu4000] Length = 216 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + ++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHQECQDVTDFGEELQQLVADMFASQRTAEGVGLAANQIGVDKKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP+++ + EGCLS+P + R + V D Sbjct: 100 DCPDDEGVRHVGVICNPELVELPAEKRRLDDSNEGCLSVPTAYMPLARPDYAEVTGRDEQ 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|307637482|gb|ADN79932.1| Peptide deformylase [Helicobacter pylori 908] gi|325996072|gb|ADZ51477.1| Peptide deformylase [Helicobacter pylori 2018] gi|325997668|gb|ADZ49876.1| Peptide deformylase [Helicobacter pylori 2017] Length = 174 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETKGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|49089809|gb|AAT51863.1| peptide deformylase [Helicobacter pylori] Length = 174 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|315586543|gb|ADU40924.1| peptide deformylase [Helicobacter pylori 35A] Length = 175 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169 >gi|17433052|sp|Q9FV54|DEF1B_SOLLC RecName: Full=Peptide deformylase 1B, chloroplastic; Short=PDF 1B; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|11320950|gb|AAG33972.1| peptide deformylase-like protein [Solanum lycopersicum] Length = 279 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 90/162 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ ++++ L+D M ++MY TDGIGL+A Q+G+ +L+V + Sbjct: 89 IVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNAAG 148 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP++ +S Y+EGCLS P DVKR + V D N I Sbjct: 149 ERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFEIS 208 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A QHE DHL G+LF D ++ D I +K+ L + Sbjct: 209 LSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALEK 250 >gi|153010428|ref|YP_001371642.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] gi|151562316|gb|ABS15813.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] Length = 166 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V +PD LR V+ P+ + +SD+ L ++L+ M + GIG+ A +G+ RLVV Sbjct: 1 MTVRPIVSYPDKRLRAVAEPVTQFDSDLQELGTDLLDTMRAAPGIGITAPHVGISKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L P ++NP+I+ SD+ +QEG +S+P DV+R A I +RY D + Sbjct: 61 LELP---TELTPKFYVNPEIVWASDEKIHHQEGSVSMPGVVDDVERHARIKIRYQDLSGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q ++GLLA C QHE+D L+GI +I LSRL+RD + K+ K + R Sbjct: 118 EQTEESEGLLAVCHQHEIDQLDGIFWIQRLSRLRRDRLIKRFEKSQRQR 166 >gi|114766695|ref|ZP_01445634.1| N-formylmethionyl tRNA deformylase [Pelagibaca bermudensis HTCC2601] gi|114541085|gb|EAU44140.1| N-formylmethionyl tRNA deformylase [Roseovarius sp. HTCC2601] Length = 165 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++++PDP L++ + + + L+ +MLE MY G GLAA Q+GVL R+ V Sbjct: 1 MALREILLWPDPKLKQPCAEVGDP-AAVSELVTDMLETMYDAPGRGLAAPQVGVLKRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P+V I+P+I+ SD+ + EGCLSIP A+V+R ++ + Y D N Sbjct: 60 MDAGWKDGDMTPVVCIDPQILAVSDETAAGDEGCLSIPGVTANVRRPVWVRMAYTDLNGD 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Q +G A QHE DHL+G++ D L Sbjct: 120 RQERRFEGAEAIVAQHEYDHLDGLVHFDRLDP 151 >gi|119357657|ref|YP_912301.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266] gi|158512604|sp|A1BHK0|DEF_CHLPD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|119355006|gb|ABL65877.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266] Length = 188 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ D +LR ++P++ I+ +I +L+ +MLE M + GIGLAA Q+G RL+VI Sbjct: 1 MILPINIYNDEVLRATAKPLKGIDRNIRDLVASMLESMRNASGIGLAAPQVGCSIRLLVI 60 Query: 62 DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DL + P+V INP ++ ++ +EGCLS+P DV R + IT++Y D + Sbjct: 61 DLSCMEKYADEKPVVVINPHLLAVKG-YNAMEEGCLSLPGILGDVVRPSSITLKYRDEHF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + + G++A LQHE+DHL+G LFID + + R I K++ L Sbjct: 120 EERTGEFSGMMARVLQHEIDHLDGKLFIDRMQKRDRRKIDKELHSLA 166 >gi|297588336|ref|ZP_06946979.1| peptide deformylase [Finegoldia magna ATCC 53516] gi|297573709|gb|EFH92430.1| peptide deformylase [Finegoldia magna ATCC 53516] Length = 162 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 3/160 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+ SR ++KI+ I ++D+M E MY GIGLA VQ+G+L R+VV Sbjct: 1 MALRQIRLENDPILRKKSREVKKIDDRIKQIVDDMFETMYENKGIGLACVQVGMLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD + MV INPKI+ SD+ + EGCLS+P V+R +TV Y D + Sbjct: 61 IDMQDEDGK---MVLINPKIVERSDEKQINVEGCLSVPGKNGYVERPKTVTVEYTDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 Q A A C HELDHL+G+L+ D + L + + + Sbjct: 118 IQRKTATDYKAHCFCHELDHLDGVLYTDKVLNLSDEEVER 157 >gi|261837976|gb|ACX97742.1| polypeptide deformylase [Helicobacter pylori 51] gi|317177377|dbj|BAJ55166.1| peptide deformylase [Helicobacter pylori F16] gi|317180556|dbj|BAJ58342.1| peptide deformylase [Helicobacter pylori F32] Length = 175 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169 >gi|256826367|ref|YP_003150327.1| peptide deformylase [Kytococcus sedentarius DSM 20547] gi|256689760|gb|ACV07562.1| peptide deformylase [Kytococcus sedentarius DSM 20547] Length = 192 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I L + ++ + ++ +I L+ +M + M + +G+GLAA Q+GV +R+ V Sbjct: 1 MAVRPITIIGHKALHQPTKKVREVTDEIRTLVADMFDTMEAAEGVGLAANQVGVRWRIFV 60 Query: 61 IDL--QDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D A V +NP + S D EGCLS+P RS + V Sbjct: 61 YDCTHDPEAGPDARGVVVNPVLEKEHVSPLSADPEADHEGCLSVPGESFPTARSDWARVT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + GLL CLQHE DHL+G L+++ LS + + + Sbjct: 121 GTDLDGNAISVEGTGLLGRCLQHETDHLDGHLYVERLSPEDKRRARDAIKE 171 >gi|104161993|emb|CAJ75702.1| N-formylmethionyl-tRNA deformylase [uncultured Thermotogales bacterium] Length = 166 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV ++ +PILR VS +E + D+ + + + MY DG+GLAA Q+ V R+ V Sbjct: 1 MVGMKVIHIGNPILRNVSESVEVFDDDLRAFVKELSKTMYVEDGVGLAAPQVAVSRRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D V INP+I++ SD+ +EGCLSIP AD+ R + + + Y D Q Sbjct: 61 YDPGD-----GLRVVINPEILSKSDEIVKMEEGCLSIPGIYADIDRPSAVRIHYQDEYGQ 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 H A +QHE DHL G+LF+D+LS KR M+ K++++++ Sbjct: 116 HHEEDLTEYPARIVQHESDHLEGVLFVDYLSASKRAMLKPKLNQIIKE 163 >gi|86137256|ref|ZP_01055834.1| peptide deformylase [Roseobacter sp. MED193] gi|85826580|gb|EAQ46777.1| peptide deformylase [Roseobacter sp. MED193] Length = 165 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +I + +M+E M + G+GL A QIGV+ RL V Sbjct: 1 MTARTCLPWPDKRLRTAATEVSEITDEIRAIWTDMIETMEAMPGVGLGANQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+++ S ++E ++P A +KR +TVRYMD N + Sbjct: 61 VD--GSRERGKAVRMANPEVLHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+ AT +QH++DHLNG LF DHLS++KRDM+ KK KL Sbjct: 119 ITERDFVGIEATSVQHQIDHLNGKLFFDHLSKVKRDMLIKKSKKL 163 >gi|255020222|ref|ZP_05292291.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] gi|254970364|gb|EET27857.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] Length = 168 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 72/167 (43%), Positives = 105/167 (62%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +PD L++ + PI +I+ DI L D+M E MY+ GIGLAA+Q+ RL+V Sbjct: 1 MALLKIVEYPDVRLKQEAAPIARIDRDIEALADDMAETMYAAPGIGLAAIQVAAPQRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + R + +NP+II QEGCLS+P V+R+ + VR +D + Sbjct: 61 VDVSEA--RNELLTLVNPEIIES-SGEEEMQEGCLSVPGVLETVRRAERVKVRALDLRGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA CLQHE+DHLNG LF+DHLSRLK+++I +K K ++ Sbjct: 118 TLELEADGLLAVCLQHEIDHLNGTLFVDHLSRLKQNLIRRKAEKRLR 164 >gi|254384637|ref|ZP_04999976.1| peptide deformylase 1 [Streptomyces sp. Mg1] gi|194343521|gb|EDX24487.1| peptide deformylase 1 [Streptomyces sp. Mg1] Length = 214 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L R + + + D+ LID+M + +G+GLAA QIGV ++ V Sbjct: 38 TARPITVVGNPVLHRECKDVTEFGEDLARLIDDMFASQKAAEGVGLAANQIGVDAKVFVY 97 Query: 62 DLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V INPK++ S EGCLS+P A + R + V D Sbjct: 98 DCPDDDGVRHTGVVINPKLVELPAASRVLDDSNEGCLSVPTAYAALARPDYAEVEGRDAQ 157 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M + Sbjct: 158 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 203 >gi|307328554|ref|ZP_07607728.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306885822|gb|EFN16834.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 200 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ ++ +P+L + R + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 24 TARPITVYGNPVLHKECRDVTVFDEELARLVDDMFASQRAAEGVGLAANQIGVDLKVFVY 83 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ NP + D V EGCLS+P ++ R + VR D + Sbjct: 84 DCMDDEGVRHVGAVCNPVLEELPADRRVLDDSNEGCLSVPTAYMELARPDYAVVRGQDLD 143 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + G A CLQHE DHL G L+ D LS+ R + K+M++ Sbjct: 144 GEPIAVRGTGYFARCLQHETDHLYGYLYTDRLSKRDRKDVLKQMAE 189 >gi|254486314|ref|ZP_05099519.1| peptide deformylase [Roseobacter sp. GAI101] gi|214043183|gb|EEB83821.1| peptide deformylase [Roseobacter sp. GAI101] Length = 159 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 1/156 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +VI+PD L +V +P+E I I LI +M + MY+ G GLAA Q+G R+ V Sbjct: 1 MSVLDIVIWPDARLTQVCQPVEGITPGITQLIADMFDTMYAAPGRGLAAPQVGRSERIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P+ +NP+II S+ +EGCLSIP+ D++R+A +T+R+ D Sbjct: 61 FDAGWKDGAPTPVACVNPEIIDLSEGRLTGEEGCLSIPNTPMDIERAAQVTLRWTDPEG- 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 G A +QHE DHL+GI+ D + + + Sbjct: 120 THERTFTGAEAVIVQHEYDHLDGIVIYDRVEKDVKK 155 >gi|33860628|ref|NP_892189.1| peptide deformylase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39930841|sp|Q7V3K7|DEF_PROMP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33633570|emb|CAE18527.1| putative formylmethionine deformylase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 201 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR ++ I K+++ I NL +ML+ MY+ GIGLAA QIG+ L+VID+ Sbjct: 32 EIYKLGDDVLRENAKRISKVDNSIRNLAKDMLQSMYAAKGIGLAAPQIGIKKELLVIDVN 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INP+I + + Y+EGCLSIP +V R + I +R+ D + + + Sbjct: 92 FEDAAAEPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLRFRDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHLNG+LF+D ++ ++ + K++ K Sbjct: 152 KADGLLARCIQHEMDHLNGVLFVDRVTS--KEDLNKELIK 189 >gi|301632277|ref|XP_002945217.1| PREDICTED: peptide deformylase 1-like [Xenopus (Silurana) tropicalis] Length = 217 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 60/141 (42%), Positives = 90/141 (63%), Gaps = 2/141 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ +++ I +L+ +ML MY GIGLAA Q+ V R+VV Sbjct: 1 MAILPILCYPDPRLHQVAQPVRAVDARIQSLVSDMLATMYDAQGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R P+V INP+I+ S + V EGCLS+P V+R + + VR +D Sbjct: 61 IDTSE--ERNQPLVLINPEIVWASAEKVVRDEGCLSVPGIYDGVERCSAVHVRALDEKGA 118 Query: 121 HQIIYADGLLATCLQHELDHL 141 ++I A+GLLA C+QHE+DHL Sbjct: 119 ARVIQAEGLLAVCMQHEMDHL 139 >gi|182625873|ref|ZP_02953639.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] gi|177908907|gb|EDT71399.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] Length = 147 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L D ILR+ R ++ IN I L+++M+E M+ +G+GLAA Q+G+L R+ V Sbjct: 1 MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMHENNGVGLAAPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D A + VFINP+I+ S + +EGCLS+P VKR+ I ++ +D N Sbjct: 61 VDAMDGAGSR---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 ++ A+ LA +QHE DHL G+LFIDH Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145 >gi|269215460|ref|ZP_06159314.1| peptide deformylase [Slackia exigua ATCC 700122] gi|269130947|gb|EEZ62022.1| peptide deformylase [Slackia exigua ATCC 700122] Length = 187 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 88/155 (56%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ +PDP LR+V + + + L M + MY+ +G GLAA Q+GVL RL+VID Sbjct: 12 EVLAYPDPTLRQVCEDCDPADKSLRKLARRMAKTMYADNGCGLAAPQVGVLKRLIVIDCD 71 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + KNP+ +NP +I V +EGCLS+P ++R A+ VRY D N + II Sbjct: 72 QDSGAKNPITLLNPTVIETRGPEVVEEEGCLSVPGITVPIRRPAYAIVRYTDLNGEDWII 131 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 DGLLA CLQHE+DHLNGI + +R Sbjct: 132 EGDGLLARCLQHEIDHLNGITLFESCDLNERIKAM 166 >gi|302874748|ref|YP_003843381.1| peptide deformylase [Clostridium cellulovorans 743B] gi|307690637|ref|ZP_07633083.1| peptide deformylase [Clostridium cellulovorans 743B] gi|302577605|gb|ADL51617.1| peptide deformylase [Clostridium cellulovorans 743B] Length = 149 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 6/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ S+ +E I+ LI +M++ MY DG+GLAA Q+G+L ++ V Sbjct: 1 MAIRNIRTVGDAVLRKNSKNVEVIDDRTKVLIQDMIDTMYDADGVGLAAPQVGILKKIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+VFINP+I+ + V EGCLSIP A+V+R + V+ ++ N + Sbjct: 61 IDIGE-----GPIVFINPEILETEGSY-VDSEGCLSIPGESAEVERPYKVKVKALNENGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 I+ + LLA + HE DHL G L+ID Sbjct: 115 EFILEGEELLARAICHENDHLYGTLYIDR 143 >gi|228470000|ref|ZP_04054916.1| peptide deformylase [Porphyromonas uenonis 60-3] gi|228308381|gb|EEK17219.1| peptide deformylase [Porphyromonas uenonis 60-3] Length = 188 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 93/175 (53%), Gaps = 6/175 (3%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K P+ ++ P+LR +S I ++ LI +M + MY +DGIGLAA QIG RL Sbjct: 1 MAKTLPIYLYGQPVLRNMSEDITPDYPNLSELIADMWQTMYESDGIGLAAPQIGRNIRLQ 60 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 VID +V IN + + S+D EGCLS+P V R I V Y Sbjct: 61 VIDATPLEDEYPECATLKLVMINAHMQSLSEDTCSEAEGCLSLPGINERVVRPKSIVVDY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 M+ + Q + G A +QHE DHL+G LF+DH+S +++ +I KK+ +V R Sbjct: 121 MNEQFEPQRLELSGYAARVVQHEYDHLDGKLFVDHISAMRKRLIKKKLQHIVDGR 175 >gi|209526681|ref|ZP_03275205.1| peptide deformylase [Arthrospira maxima CS-328] gi|209492917|gb|EDZ93248.1| peptide deformylase [Arthrospira maxima CS-328] Length = 187 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 88/147 (59%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ ++ + +I+ +I L+ ML+ MYS DGIGLAA Q+GV +++VID + Sbjct: 18 DIHYLGDRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIVIDCE 77 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP I S + S +QEGCLSIP DV R + V + D N + + I Sbjct: 78 PDNAATPPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGRPRSI 137 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 A LL +QHE+DHL G+LF+D + Sbjct: 138 LATELLCRAIQHEIDHLQGVLFVDRVD 164 >gi|32307482|gb|AAP79146.1| peptide deformylase [Bigelowiella natans] Length = 315 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 4/166 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PDP LR + I + + L D M +VMY DG GLAA Q+G+ YRL+V + Q Sbjct: 124 VIKYPDPRLRTENEKITEFGKPLQELADEMFDVMYDDDGCGLAAPQVGINYRLMVFNPQG 183 Query: 66 HAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +K+ MV NP+II+ ++ ++EGCLS P R V+R + +R D + Sbjct: 184 DRRKKDTEMVLANPEIISSGEEKDWFREGCLSFPGIRGQVERPTKVLIRAQDVKGEDIEF 243 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +G A QHE DHL+G LF D + + + +KLV L D Sbjct: 244 ELEGFTARVFQHEYDHLSGTLFHDRMPD---KEVAEIHAKLVTLED 286 >gi|71281182|ref|YP_267165.1| peptide deformylase [Colwellia psychrerythraea 34H] gi|71146922|gb|AAZ27395.1| polypeptide deformylase [Colwellia psychrerythraea 34H] Length = 166 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ P+ L ++P+ + S I LID+++E MY T DGIGLAA Q+G +V Sbjct: 1 MTVLTILTAPNDKLIEQAKPVSDV-SQIQMLIDDLIETMYDTEDGIGLAATQVGRSEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D +R +V +NP I T + + QEGCLSIP Y ADV+R +TV +D N Sbjct: 60 VIDISD--NRDELLVLVNPVI-THGEATAKGQEGCLSIPGYYADVERFTHVTVEALDRNG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I +D LA +QHE+DHL G LFID+LS LK+ M KK+ K ++ Sbjct: 117 KELTITSDEFLAIVMQHEIDHLKGKLFIDYLSPLKQQMALKKVKKTIK 164 >gi|210134993|ref|YP_002301432.1| peptide deformylase [Helicobacter pylori P12] gi|238058211|sp|B6JM24|DEF_HELP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|210132961|gb|ACJ07952.1| polypeptide deformylase [Helicobacter pylori P12] Length = 174 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETKGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|212695671|ref|ZP_03303799.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM 7454] gi|212677344|gb|EEB36951.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM 7454] Length = 162 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 99/148 (66%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR+ S+ ++++N I L+D+M E MY DG+GLAA Q+G+L R++V Sbjct: 10 MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 69 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++D + +NP+II + V EGCLS+P++ A+VKR A + V+Y+D N + Sbjct: 70 VDIRDEDG---LIKLVNPEIIEKDGE-QVGVEGCLSVPNFNANVKRPAHVIVKYLDENGE 125 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + I A+GL A L HE+DHLNG+LFID Sbjct: 126 EKKIEAEGLKAVALCHEIDHLNGVLFID 153 >gi|126728526|ref|ZP_01744342.1| peptide deformylase [Sagittula stellata E-37] gi|126711491|gb|EBA10541.1| peptide deformylase [Sagittula stellata E-37] Length = 163 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P V +PD LR + ++ I +I + +M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTVRPFVPWPDKRLRAAAAQVDAITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R + NP+I+ S ++EG ++P A + R +TV Y+D Sbjct: 61 VDASDA--RGQAVRMANPEILHASVQLRDHEEGSPNLPGVWAKIARPRAVTVAYIDETGL 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL AT +QH++DHLNG ++ D LS++KRDM+ +K K+ Sbjct: 119 RVERDFVGLWATSVQHQVDHLNGRMYFDRLSKVKRDMLIRKARKM 163 >gi|296115525|ref|ZP_06834155.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] gi|295977920|gb|EFG84668.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] Length = 305 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 3/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V+FPD LR V+ P+ + + + ++L+ + + GIG+ A IGVL R+VV+DL Sbjct: 142 PIVLFPDQRLRMVAEPVVVFDETLRAMTADLLDTVRAAPGIGITAPHIGVLQRVVVLDLP 201 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P +INP+I+ SD+ + ++EG +S+P V+R A + VRY D + + Sbjct: 202 GGLG---PQTYINPEIVWRSDETARHEEGSISMPGVTEVVERPARVRVRYRDVDGHEMME 258 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ADGL A C QHE+D L G+ + LS L+R + + K+ ++ Sbjct: 259 DADGLRAVCHQHEIDQLEGVFWTQRLSTLRRSRLMSRYEKIKKVE 303 >gi|317009197|gb|ADU79777.1| peptide deformylase [Helicobacter pylori India7] Length = 174 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 108/172 (62%), Gaps = 4/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK+I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPKEDGVQHKEDCLEIINPKLIEAGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171 >gi|108563203|ref|YP_627519.1| peptide deformylase [Helicobacter pylori HPAG1] gi|123373755|sp|Q1CT77|DEF_HELPH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|107836976|gb|ABF84845.1| polypeptide deformylase [Helicobacter pylori HPAG1] Length = 174 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 107/172 (62%), Gaps = 4/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171 >gi|257438995|ref|ZP_05614750.1| peptide deformylase [Faecalibacterium prausnitzii A2-165] gi|257198580|gb|EEU96864.1| peptide deformylase [Faecalibacterium prausnitzii A2-165] Length = 178 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G+L R+ V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRIFV 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P + F+NP+I+ S+D EGCLS P + V R + VR Sbjct: 61 VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D N + A+ LLA C+QHE DHL+GI ++ Sbjct: 121 AQDRNGNWFELEAENLLARCIQHENDHLDGITIME 155 >gi|148977715|ref|ZP_01814276.1| peptide deformylase [Vibrionales bacterium SWAT-3] gi|145963083|gb|EDK28352.1| peptide deformylase [Vibrionales bacterium SWAT-3] Length = 170 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 104/170 (61%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M +P++ PD LR + ++ +++ + LID+ML+ +Y T +GIGLAA Q+G ++ Sbjct: 1 MAIRPIIEVPDDRLRVTYQIVDDVST-VQTLIDDMLDTLYDTDNGIGLAAAQVGHSEAVL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +ID+ + +R P++ INP+II + +EGCLS+P A V+R + V+ ++ Sbjct: 60 IIDISE--NRDQPLIMINPQIIEH-EGLIDSEEGCLSVPGVYAKVQRHQRVKVQALNRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I D LA +QHE+DHL+G +FID+LS LKR M KK+ K + + Sbjct: 117 EAFTIEDDDYLAIVMQHEIDHLHGKIFIDYLSPLKRKMAMKKIKKFQRAK 166 >gi|150396253|ref|YP_001326720.1| peptide deformylase [Sinorhizobium medicae WSM419] gi|150027768|gb|ABR59885.1| peptide deformylase [Sinorhizobium medicae WSM419] Length = 163 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +P+ L + P+ + + + L ++++ M + GIG+ A IG+L RL V Sbjct: 1 MAVRSIIRYPNAALATATEPVSRFDESLRQLAHDLIDTMRAAPGIGITAPHIGILQRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ A P F+NP+I+ S D + + EG +S+P +V+R A + VR+ + Sbjct: 61 IETDPQAG---PRSFVNPEILWQSADSTRHSEGSVSMPGIAEEVERPARVRVRFQTLEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A GL+A CLQHE+D L+GI +I LSRLKR+ K+ KL Sbjct: 118 THEEEAAGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAIKRFEKL 162 >gi|24215138|ref|NP_712619.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601] gi|45657385|ref|YP_001471.1| peptide deformylase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|23396549|sp|Q93LE9|DEF_LEPIN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|59797588|sp|Q72S74|DEF_LEPIC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|14626937|gb|AAK70806.1| peptide deformylase [Leptospira interrogans] gi|24196204|gb|AAN49637.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601] gi|45600624|gb|AAS70108.1| putative polypeptide deformylase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 178 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 85/162 (52%), Gaps = 8/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ DPILR++S P+ + + LI +M + M +G+GLAA QIG+L + Sbjct: 1 MSVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQ 60 Query: 58 LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +VV+ +D+ + +NP I + D S + EGCLS+P R V+R I + Sbjct: 61 IVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRM 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++MD DG A QHE DHL GIL++D L K Sbjct: 121 QWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 162 >gi|166032719|ref|ZP_02235548.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC 27755] gi|166027076|gb|EDR45833.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC 27755] Length = 156 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + + + K++ LI++ML+ MY G+GLAA Q+GVL R+VV Sbjct: 1 MAIREIRVLGDDVLTKHCKEVTKMSIRTKILIEDMLDTMYEAMGVGLAAPQVGVLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P++ INP+I+ S + +EGCLS+P V R ++ VR +D + Sbjct: 61 IDVGE-----GPIILINPEILETSGE-QTGEEGCLSVPGKCGQVTRPNYVKVRALDEDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA HE+DHL+G +++D + Sbjct: 115 EFEMEGEGLLARAFCHEIDHLDGKMYVDLVE 145 >gi|15611796|ref|NP_223447.1| peptide deformylase [Helicobacter pylori J99] gi|8134402|sp|Q9ZL51|DEF_HELPJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|4155293|gb|AAD06310.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99] Length = 174 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETKGSI-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|302338169|ref|YP_003803375.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] gi|301635354|gb|ADK80781.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] Length = 161 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ + +LR + + +++ I L D+M+ M+ DG+GLAA QIGVL RL V ++ Sbjct: 3 ILTLGNELLRERTATVAEVDESIRRLADDMIVTMHEDDGVGLAAPQIGVLKRLFVCHVRG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P VFINP+II S + Y+EGCLSIP ADV R I V+ +D N + + Sbjct: 63 DV----PRVFINPEIIGTSQEQVRYEEGCLSIPGIYADVLRPESIQVQAIDENGKAFKLA 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLLA +QHE+DHL G+LFIDHL KR + K K Sbjct: 119 AEGLLARVIQHEMDHLKGVLFIDHLEERKRRRLLKLYEK 157 >gi|254720523|ref|ZP_05182334.1| peptide deformylase [Brucella sp. 83/13] gi|265985555|ref|ZP_06098290.1| peptide deformylase-like protein [Brucella sp. 83/13] gi|306838109|ref|ZP_07470966.1| peptide deformylase [Brucella sp. NF 2653] gi|264664147|gb|EEZ34408.1| peptide deformylase-like protein [Brucella sp. 83/13] gi|306406846|gb|EFM63068.1| peptide deformylase [Brucella sp. NF 2653] Length = 164 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + D+ L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L P +INP+I+ ++ +QEG +S+P +V+R A I + Y D + Sbjct: 61 LELDRTTG---PKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLCYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|221640345|ref|YP_002526607.1| peptide deformylase [Rhodobacter sphaeroides KD131] gi|221161126|gb|ACM02106.1| Peptide deformylase [Rhodobacter sphaeroides KD131] Length = 163 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + P E + L +ML MY +G GLAA Q+G + RL V Sbjct: 1 MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ ++ EGCLSIP R V R+ I +R+ Sbjct: 60 MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q + G+ A C QHE+DHL+GI+ +D LS RD ++M Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162 >gi|260428274|ref|ZP_05782253.1| peptide deformylase [Citreicella sp. SE45] gi|260422766|gb|EEX16017.1| peptide deformylase [Citreicella sp. SE45] Length = 166 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++++PD L++ + + +++ L+ ++ E MY G GLAA Q+GVL R+ V Sbjct: 1 MSLREILLWPDERLKQPCETVADV-AEVEQLVTDLFETMYDAPGRGLAAPQVGVLKRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P+ INP+I+ S++ + EGCLSIP A V+R + + + D + Sbjct: 60 MDAGWKEGDMVPLACINPEIVEVSEETASGPEGCLSIPGVTAQVRRPVRVRMAFTDLSGT 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q +G A QHE DHL G++ D L + + + Sbjct: 120 RQERDFEGSEAIVAQHEYDHLEGLVHFDRLDPQEAKALKLEYEA 163 >gi|62317677|ref|YP_223530.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941] gi|62197870|gb|AAX76169.1| Def-1, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941] Length = 164 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A +G+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHVGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELDRAAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|260062214|ref|YP_003195294.1| peptide deformylase [Robiginitalea biformata HTCC2501] gi|88783776|gb|EAR14947.1| peptide deformylase [Robiginitalea biformata HTCC2501] Length = 196 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 87/162 (53%), Gaps = 12/162 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LRR I ++ LI+NM E MY +G+GLAA Q+G RL ++ Sbjct: 1 MILPIVAYGDPVLRRKCEAIGPEYPELATLIENMWETMYQANGVGLAAPQVGRPIRLFLV 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A ++ VFIN ++ + + EGCLSIPD R DV R Sbjct: 61 DTSPFAEDEDFSPEEQEKLRAFKRVFINAQMQEETGKKWAFNEGCLSIPDIREDVTRQDT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 IT+RY D + DGLLA +QHE DH+ GILF DH+S Sbjct: 121 ITLRYQDAEFKEHTETFDGLLARVIQHEYDHIEGILFTDHIS 162 >gi|308062113|gb|ADO04001.1| peptide deformylase [Helicobacter pylori Cuz20] Length = 175 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +DNM E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDNMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169 >gi|283955379|ref|ZP_06372878.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414] gi|283793139|gb|EFC31909.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414] Length = 676 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 99/157 (63%), Gaps = 3/157 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S + K ++++ NL+D+M E M +++G+GLAA+Q+ V R++++ Sbjct: 1 MVRKIITYPNPKLFLSSETVNKFDAELHNLLDDMYETMIASNGVGLAAIQVDVPLRVLLV 60 Query: 62 DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D +++ + INP+II ++ EGCLS+PD+ +VKR + ++Y D Sbjct: 61 NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHVLLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157 >gi|188527363|ref|YP_001910050.1| peptide deformylase [Helicobacter pylori Shi470] gi|238691921|sp|B2UT38|DEF_HELPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188143603|gb|ACD48020.1| peptide deformylase [Helicobacter pylori Shi470] Length = 175 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ I +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEIVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169 >gi|332290887|ref|YP_004429496.1| peptide deformylase [Krokinobacter diaphorus 4H-3-7-5] gi|332168973|gb|AEE18228.1| peptide deformylase [Krokinobacter diaphorus 4H-3-7-5] Length = 196 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 13/181 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+ P+V + DP+L++ ++ I LI+NM + MY G+GLAA QIG+ R+ + Sbjct: 1 MII-PIVAYGDPVLKKKAKDITPEYPKFSELIENMYDTMYEAHGVGLAAPQIGLPIRVFL 59 Query: 61 IDLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 +D A ++ F+N +I+ + + EGCLSIP DV R Sbjct: 60 VDTTPFAEDESYTPEEQEQLANFKKTFVNAEILEEEGEEWAFSEGCLSIPGINEDVFRKP 119 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +T+RY D N + DGL+A +QHE DH+ G+LF D LS LK+ +I K+ + + Sbjct: 120 KVTIRYRDENFKEYTETYDGLIARVIQHEYDHIEGVLFTDKLSSLKKRLIKGKLVNISKG 179 Query: 169 R 169 + Sbjct: 180 K 180 >gi|254779233|ref|YP_003057338.1| peptide deformylase [Helicobacter pylori B38] gi|254001144|emb|CAX29102.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Helicobacter pylori B38] Length = 174 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|124267003|ref|YP_001021007.1| peptide deformylase [Methylibium petroleiphilum PM1] gi|124259778|gb|ABM94772.1| Peptide deformylase [Methylibium petroleiphilum PM1] Length = 177 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R++ P+ + + + LI++M + M + +G GLAA QIGV +LV Sbjct: 1 MAVRDILKMGDPRLLRIAHPVREFDTPALHALIEDMFDTMEAANGAGLAAPQIGVDLQLV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP+I S+D EGCLS+P R V R I Sbjct: 61 IFGFTKSERYPEAPPVPRTVLINPQITPLSEDLEDGWEGCLSVPGLRGVVPRHQRIRYTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A+G A +QHE DHL G+L+ + R T+ + Sbjct: 121 FDPQGRRIEREAEGFHARVVQHECDHLAGVLYPMRVRDFSRFGYTEVL 168 >gi|293603522|ref|ZP_06685943.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] gi|292817958|gb|EFF77018.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] Length = 177 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + P++ DP L RV+ P+E+ + ++ LI +M E M + G+GLAA QIGV +LV+ Sbjct: 1 MIHPILKMGDPRLLRVAPPVEQFDTPELHALIADMFETMAAAQGVGLAAPQIGVDLQLVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + + NP I SD+ EGCLS+P R V R I Sbjct: 61 FGFDRNERYPDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGQVPRYRHIRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + A+G A +QHE DHL G L+ + + T+ Sbjct: 121 DPYGKLIEREAEGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165 >gi|124506707|ref|XP_001351951.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7] gi|23504979|emb|CAD51762.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7] Length = 241 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V +PDPILRR S + + ++ ++ M ++MY + GIGL+A Q+ + R++V + L Sbjct: 67 IVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALY 126 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +N +FINP I+ S EGCLS P V+R + +++ Y D N + Sbjct: 127 EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 186 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID ++++ + + K+++L++ Sbjct: 187 ILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 229 >gi|72162127|ref|YP_289784.1| peptide deformylase [Thermobifida fusca YX] gi|71915859|gb|AAZ55761.1| peptide deformylase [Thermobifida fusca YX] Length = 221 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 4/162 (2%) Query: 8 IFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + + +L R + + + ++ LID+M MY +G+GLAA Q+GV R+ V D D Sbjct: 42 VVGEDVLHRRNADVTEFGTPELHTLIDDMFRTMYVAEGVGLAANQVGVDLRVFVYDCPDD 101 Query: 67 AHRKNPMVFINPKIITFSDDFS---VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 ++ INP + T+ + V EGCLS+P A++ R+ + V D + Sbjct: 102 DGVRHVGHVINPVLETWGAEEEGLVVENEGCLSVPGPHAELARAPYARVTGFDRDGNPVT 161 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + G A CLQHE DH G L+ID LS+ +R + K M ++ Sbjct: 162 VEGSGYFARCLQHETDHTLGRLYIDRLSKRERKKVLKAMEEM 203 >gi|189466358|ref|ZP_03015143.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM 17393] gi|189434622|gb|EDV03607.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM 17393] Length = 184 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M + +G+GLAA Q+G+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRKVAEDIAPDYPNLKELIANMFETMDNAEGVGLAAPQVGLPVRVVVV 60 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL ++ +INP I+ S + +EGCLS+P VKR I V YMD Sbjct: 61 DLDVLSEDYPEYKGFRKAYINPHILEVSGEEVSMEEGCLSLPGIHEAVKRGNKIHVTYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ + Sbjct: 121 EDMVEHDEIVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173 >gi|302554040|ref|ZP_07306382.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302471658|gb|EFL34751.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 216 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTDFGDEFQQLVADMFASQRTAEGVGLAANQIGVDAKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NPK++ + EGCLS+P A + R + V D Sbjct: 100 DCPDDEGVRHTGVVCNPKLVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|91216549|ref|ZP_01253515.1| peptide deformylase [Psychroflexus torquis ATCC 700755] gi|91185343|gb|EAS71720.1| peptide deformylase [Psychroflexus torquis ATCC 700755] Length = 196 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+L++ + I K + I L++NM E MY+ G+GLAA QIG+ RL ++ Sbjct: 1 MILPIAAYGSPVLKKKAEDISKDHPKIDELLENMFETMYNASGVGLAAPQIGLSIRLFIV 60 Query: 62 DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + VFINP+II + + EGCLSIPD D+ R Sbjct: 61 DAKPFSEDESLSELEKNELEAFKRVFINPQIIEENGIEWDFNEGCLSIPDVHEDIFRKPE 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ITV Y+D N Q GL A +QHE DH+ G+LF D +S LK+ +I K++ + + + Sbjct: 121 ITVEYLDENFTPQKEKLSGLAARVVQHEYDHIEGVLFTDRISSLKKRLIKNKLTNISKGK 180 >gi|158320460|ref|YP_001512967.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] gi|158140659|gb|ABW18971.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] Length = 147 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 91/152 (59%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR++S+P++ I+ I+ L+D+M+E MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRKEEDPVLRKISKPVDTIDDKIITLLDDMIETMYDADGVGLAAPQVGILKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II D EGCLS+P +V R + V+ D Sbjct: 61 IDIGE-----GVIELINPEII-AEDGVQCDNEGCLSLPGITEEVARPRTVKVKGFDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ + LLA L HE+DHLNGILFID + Sbjct: 115 EMIVEGEELLARALCHEIDHLNGILFIDRAEK 146 >gi|254375239|ref|ZP_04990719.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548] gi|151572957|gb|EDN38611.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548] Length = 174 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 5/170 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 3 MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D+ +NP + + +EGCLS P A V R+ + ++ ++ Sbjct: 63 IM--YDNLEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 121 GDEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170 >gi|117621144|ref|YP_856896.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562551|gb|ABK39499.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 166 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L + +E I + + LID+MLE +Y+T +GIGLAA Q+G +V Sbjct: 1 MAMLDILTVPDPRLGIKAEQVEDI-AAVQGLIDDMLETLYATDNGIGLAATQVGRKEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL + R P+V INP++ + + ++ QEGCLS+PDY ADV+R + V +D + Sbjct: 60 IIDLSEK--RDQPLVLINPQVTS-GTEPALGQEGCLSVPDYYADVERYGSVVVSALDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + LA +QHE+DHL G +FID+LS LKR M KK+ K ++ Sbjct: 117 VPITVKSSDFLAIVMQHEIDHLQGKVFIDYLSPLKRKMALKKVKKHLK 164 >gi|297195782|ref|ZP_06913180.1| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486] gi|297152947|gb|EDY66111.2| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486] Length = 190 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 74/151 (49%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P+ + DP+L + + D+ L++++ MY+ G+GLAA Q+GV R+ V D Sbjct: 13 VRPMSLLADPVLHKPCETVTDFGPDLGRLVEDLFATMYAAQGVGLAANQVGVGSRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + + Sbjct: 73 CPDDEDVRHLGHVVNPRLVEADGVTVRGPEGCLSLPGLEAGTERFDRAVVEGVTWEGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + G A CLQHE DHL G+++ D L+ Sbjct: 133 RVEGTGFFARCLQHECDHLEGLVYADRLTPW 163 >gi|262195424|ref|YP_003266633.1| peptide deformylase [Haliangium ochraceum DSM 14365] gi|262078771|gb|ACY14740.1| peptide deformylase [Haliangium ochraceum DSM 14365] Length = 175 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 100/166 (60%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V++PD LR+ +R +E+++ + +L N+++ MYS +G+G+AAVQIG ++ + Sbjct: 1 MAVLPIVVWPDARLRQETRRVEQVDDAVRDLYRNLVDTMYSLNGLGIAAVQIGDPTQMFI 60 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ L P+ FINP+++ S+D +EGCLS P V R A VR + + Sbjct: 61 VEPALAGRDANDEPVAFINPEVVWTSEDSDKSEEGCLSFPGIYVQVDRPAKARVRALGID 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A+GL A CL HE DHL G L +D + LKR MI +K+++ Sbjct: 121 GEIFEVEAEGLFARCLLHENDHLTGKLLVDFVGPLKRQMIRRKLNR 166 >gi|261839392|gb|ACX99157.1| peptide deformylase [Helicobacter pylori 52] Length = 175 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ I +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEIVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169 >gi|254477587|ref|ZP_05090973.1| peptide deformylase [Ruegeria sp. R11] gi|214031830|gb|EEB72665.1| peptide deformylase [Ruegeria sp. R11] Length = 165 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I D+ L +M++ M + G+GLAA QIGVL RL V Sbjct: 1 MTVRTCLPWPDKHLRSRAVEVSEITDDVRALWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+I+ S + E ++P A +KR +TVRYMD N + Sbjct: 61 VD--GSSERGRAVRMANPEILHASVALREHDEASPNLPGVSAKIKRPRAVTVRYMDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K KL Sbjct: 119 TVERDFVGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLLRKAKKLT 164 >gi|77464453|ref|YP_353957.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1] gi|77388871|gb|ABA80056.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1] Length = 163 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + P E + L +ML MY +G GLAA Q+G + RL V Sbjct: 1 MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGRMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ ++ EGCLSIP R V R+ I +R+ Sbjct: 60 MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q + G+ A C QHE+DHL+GI+ +D LS RD ++M Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162 >gi|85700127|gb|ABC74513.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIGT-GGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|15645412|ref|NP_207586.1| peptide deformylase [Helicobacter pylori 26695] gi|3023623|sp|P56419|DEF_HELPY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2313922|gb|AAD07841.1| polypeptide deformylase (def) [Helicobacter pylori 26695] Length = 174 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|21674275|ref|NP_662340.1| polypeptide deformylase [Chlorobium tepidum TLS] gi|25452909|sp|Q8KCG7|DEF_CHLTE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21647445|gb|AAM72682.1| peptide deformylase [Chlorobium tepidum TLS] Length = 187 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + DP+L ++P++ ++S I LI M + MY GIGLAA Q+G RLVV+ Sbjct: 1 MILPINTYSDPVLAMKAKPLKGVDSAIEELIAEMFDTMYKAPGIGLAAPQVGHSLRLVVV 60 Query: 62 DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D+ + PMV INP+I+ S+ +EGCLS+P +V R + IT+ Y D Sbjct: 61 DISTIKEYADFKPMVVINPRIVAVRG-RSLMEEGCLSVPGIAGNVVRPSAITLHYRDEKF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ++A LQHE+DHL+G LF+D + + R I K++ + + R Sbjct: 120 EEHTADFHSMMARVLQHEIDHLDGTLFVDRMDKRDRRKIQKELDAIAEGR 169 >gi|15965155|ref|NP_385508.1| peptide deformylase [Sinorhizobium meliloti 1021] gi|307309167|ref|ZP_07588838.1| peptide deformylase [Sinorhizobium meliloti BL225C] gi|23396568|sp|Q92QD0|DEFL_RHIME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|15074335|emb|CAC45981.1| Putative polypeptide deformylase [Sinorhizobium meliloti 1021] gi|306900313|gb|EFN30929.1| peptide deformylase [Sinorhizobium meliloti BL225C] Length = 172 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 96/169 (56%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP P+L + I + + + L D++++ M + GIG+ A IG+L RL V Sbjct: 1 MAVRPIIRFPSPLLTTSAERIGRFDGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I++ P F+NP+I+ S + + + EG +S+P +V+R + V + + + Sbjct: 61 IEVDPQTG---PRSFVNPEIVWQSSETAWHTEGSVSMPGVAEEVERPVRVRVSFQTLDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GL+A CLQHE+D LNGI +I LSRLKR+ K+ K + Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKFNRAE 166 >gi|311113846|ref|YP_003985068.1| peptide deformylase [Rothia dentocariosa ATCC 17931] gi|310945340|gb|ADP41634.1| peptide deformylase [Rothia dentocariosa ATCC 17931] Length = 190 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR PI + ++ LID+ML+ MY +G+GLA QIG+ ++ Sbjct: 1 MTILSIRTVGDPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP + + EGCLS+P ++D R + VR +D + Sbjct: 61 FGGIDGRE----GYIINPVL-ETGTEPQEGGEGCLSVPGIKSDTPRMNWARVRGVDKTGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ +GL A LQHE DHL+G LFID L R + + + Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRKRVMRTIRA 159 >gi|260465452|ref|ZP_05812642.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] gi|259029756|gb|EEW31042.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] Length = 166 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP+P+LR V+ P++ +SD+ L ++++ M++ GIG+ IG+L RLVV Sbjct: 1 MAVRPIIRFPNPLLRAVAEPVKLFDSDLHGLAGDLVDTMHAAPGIGITGPHIGILRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I L A P +++NP I+ S + + EG +S+P D++R A I VRY D + Sbjct: 61 IQLPSAAK---PGIYVNPSIVHASTEMIRHAEGSVSMPGVTEDIERHARIIVRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q ADGLLA C QHE+D L+G+ + L+RLKRD + K+ KL++ Sbjct: 118 EQFENADGLLAVCHQHEIDQLDGLFWTHRLTRLKRDRLVKRYGKLMR 164 >gi|253987938|ref|YP_003039294.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779388|emb|CAQ82549.1| peptide deformylase 2 [Photorhabdus asymbiotica] Length = 168 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 97/160 (60%), Gaps = 5/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PD LR+ + + I LID+ML+ MYST +GIGLAA Q+G ++ Sbjct: 1 MATLEILTIPDERLRQKCVEVTNV-EAIQGLIDDMLDTMYSTDNGIGLAAPQVGRKEAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +ID+ A R P++ +NPKI+ D + QEGCLS+P Y ADV+R + V ++ + Sbjct: 60 IIDIS--ATRDEPLILVNPKIVEK-DRSVIGQEGCLSVPGYYADVERFEKVKVEALNRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + + ++ LA +QHE+DHL+G +FID+LS LKR M Sbjct: 117 ETITVESEDFLAIVMQHEIDHLHGKIFIDYLSPLKRQMAL 156 >gi|23500203|ref|NP_699643.1| peptide deformylase [Brucella suis 1330] gi|83269660|ref|YP_418951.1| peptide deformylase [Brucella melitensis biovar Abortus 2308] gi|161511169|ref|NP_541790.2| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|161620522|ref|YP_001594408.1| peptide deformylase [Brucella canis ATCC 23365] gi|163844620|ref|YP_001622275.1| peptide deformylase [Brucella suis ATCC 23445] gi|189022926|ref|YP_001932667.1| peptide deformylase [Brucella abortus S19] gi|225686258|ref|YP_002734230.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|254691174|ref|ZP_05154428.1| peptide deformylase [Brucella abortus bv. 6 str. 870] gi|254698957|ref|ZP_05160785.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|254699710|ref|ZP_05161538.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|254702846|ref|ZP_05164674.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|254706033|ref|ZP_05167861.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|254711667|ref|ZP_05173478.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|254732404|ref|ZP_05190982.1| peptide deformylase [Brucella abortus bv. 4 str. 292] gi|256015237|ref|YP_003105246.1| peptide deformylase [Brucella microti CCM 4915] gi|256029699|ref|ZP_05443313.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|256043351|ref|ZP_05446286.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|256059334|ref|ZP_05449536.1| peptide deformylase [Brucella neotomae 5K33] gi|256111642|ref|ZP_05452632.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|256157852|ref|ZP_05455770.1| peptide deformylase [Brucella ceti M490/95/1] gi|256253186|ref|ZP_05458722.1| peptide deformylase [Brucella ceti B1/94] gi|256256360|ref|ZP_05461896.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|256262606|ref|ZP_05465138.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str. 63/9] gi|260544911|ref|ZP_05820732.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260564557|ref|ZP_05835042.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260568243|ref|ZP_05838712.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260756775|ref|ZP_05869123.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str. 870] gi|260760206|ref|ZP_05872554.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str. 292] gi|260763444|ref|ZP_05875776.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882591|ref|ZP_05894205.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68] gi|261220293|ref|ZP_05934574.1| peptide deformylase-like protein [Brucella ceti B1/94] gi|261313474|ref|ZP_05952671.1| peptide deformylase-like protein [Brucella pinnipedialis M163/99/10] gi|261319290|ref|ZP_05958487.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94] gi|261323293|ref|ZP_05962490.1| peptide deformylase-like protein [Brucella neotomae 5K33] gi|261750174|ref|ZP_05993883.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513] gi|261753446|ref|ZP_05997155.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686] gi|265986710|ref|ZP_06099267.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1] gi|265989773|ref|ZP_06102330.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993119|ref|ZP_06105676.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str. Ether] gi|265996360|ref|ZP_06108917.1| peptide deformylase-like protein [Brucella ceti M490/95/1] gi|54036957|sp|P63920|DEFL_BRUSU RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|54040933|sp|P63919|DEFL_BRUME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|23463805|gb|AAN33648.1| polypeptide deformylase [Brucella suis 1330] gi|82939934|emb|CAJ12948.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus 2308] gi|161337333|gb|ABX63637.1| peptide deformylase [Brucella canis ATCC 23365] gi|163675343|gb|ABY39453.1| peptide deformylase [Brucella suis ATCC 23445] gi|189021500|gb|ACD74221.1| Formylmethionine deformylase [Brucella abortus S19] gi|225642363|gb|ACO02276.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|255997897|gb|ACU49584.1| peptide deformylase [Brucella microti CCM 4915] gi|260098182|gb|EEW82056.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260152200|gb|EEW87293.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260154908|gb|EEW89989.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260670524|gb|EEX57464.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str. 292] gi|260673865|gb|EEX60686.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676883|gb|EEX63704.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str. 870] gi|260872119|gb|EEX79188.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68] gi|260918877|gb|EEX85530.1| peptide deformylase-like protein [Brucella ceti B1/94] gi|261298513|gb|EEY02010.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94] gi|261299273|gb|EEY02770.1| peptide deformylase-like protein [Brucella neotomae 5K33] gi|261302500|gb|EEY05997.1| peptide deformylase-like protein [Brucella pinnipedialis M163/99/10] gi|261739927|gb|EEY27853.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513] gi|261743199|gb|EEY31125.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686] gi|262550657|gb|EEZ06818.1| peptide deformylase-like protein [Brucella ceti M490/95/1] gi|262763989|gb|EEZ10021.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str. Ether] gi|263000442|gb|EEZ13132.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str. Rev.1] gi|263092392|gb|EEZ16645.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str. 63/9] gi|264658907|gb|EEZ29168.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1] Length = 164 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELDRAAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|187935113|ref|YP_001885413.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] gi|187723266|gb|ACD24487.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] Length = 147 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 92/152 (60%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ R +EKI+ ++ LI +MLE MY DG+GLAA Q+G+L RL + Sbjct: 1 MALRNIRKYGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P+VFINP+I+ D V +EGCLS+P V R ++ R ++ + Sbjct: 61 VDIGE-----GPLVFINPEILDT-DGKQVDEEGCLSLPGKTEPVMRPNYVKARALNEKWE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A+ LLA + HE DHLNG LFID ++ Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRTTK 146 >gi|153809825|ref|ZP_01962493.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174] gi|149834003|gb|EDM89083.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174] Length = 156 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR++S+P++++ I+ LID+ML+ MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRVIRTEEDPVLRKISKPVKEVTPKIITLIDDMLDTMYEAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S + EGCLS+P V R ++ V+ MD Sbjct: 61 IDVGE-----GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAMDEEMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I LLA HE+DHL+G ++ D + Sbjct: 115 EVIYEGTELLARAFCHEIDHLDGKMYTDLVE 145 >gi|57168634|ref|ZP_00367766.1| polypeptide deformylase [Campylobacter coli RM2228] gi|305432738|ref|ZP_07401898.1| peptide deformylase [Campylobacter coli JV20] gi|57019915|gb|EAL56595.1| polypeptide deformylase [Campylobacter coli RM2228] gi|304444247|gb|EFM36900.1| peptide deformylase [Campylobacter coli JV20] Length = 175 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 98/164 (59%), Gaps = 3/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ L S P+++ + ++ L+D+M + M ++ G+GLAA+Q+ + R +++ Sbjct: 1 MVRKIITYPNSRLFLNSEPVKQFDQELHTLLDDMYDTMIASQGVGLAAIQVDIPLRALIV 60 Query: 62 DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D +++ + INP+II ++ EGCLS+PD+ +V+R I ++Y D Sbjct: 61 NILDENEEQKKEDLLEIINPQIIPLGEEKITCTEGCLSVPDFFEEVERYNHILLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + + A G LA +QHE DHLNG LFI+ +S LKR K+ Sbjct: 121 GNFKELEAQGFLAVAIQHENDHLNGHLFIEKISFLKRQKFDKEF 164 >gi|225022087|ref|ZP_03711279.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii ATCC 33806] gi|305680576|ref|ZP_07403384.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] gi|224945020|gb|EEG26229.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii ATCC 33806] gi|305660107|gb|EFM49606.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] Length = 201 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI+ P+L + + + + + LID+M E M G+GLAA QIGV R+ V Sbjct: 7 MTVRPIVIYGTPVLHQPTAIVTEPIDTLRELIDDMFETMEKAHGVGLAANQIGVGKRIFV 66 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSV------YQEGCLSIPDYRADVKRSAFITVRY 114 + D + FINP + T + EGCLS+P R+ + V Sbjct: 67 YNCPDDEGVIHRGCFINPVLETSDIPEGMPAVDGSDDEGCLSLPGLSFPTGRATWAKVTG 126 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ N + G LA C QHE+ HL+G ++ D L + K + + Sbjct: 127 LNENGEEVSEEGTGFLARCFQHEVGHLDGFVYADVLQGRWKRAGKKAIKR 176 >gi|284047692|ref|YP_003398031.1| peptide deformylase [Acidaminococcus fermentans DSM 20731] gi|283951913|gb|ADB46716.1| peptide deformylase [Acidaminococcus fermentans DSM 20731] Length = 158 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PILR + P+ + + + L+ +M E MY+ +G GLAA QIG+ RLVV Sbjct: 1 MAIYDIVKVGAPILREKAVPVTRFDKKLARLLKDMAETMYAANGCGLAAPQIGLSKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D A + F+NP + + +V EGCLS+PDY +VKR+A ITV + D Sbjct: 61 IDAGDGAGIRE---FVNPVLTDPEGE-AVDSEGCLSVPDYEGEVKRAARITVHFQDRKGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 H + ADGLLA LQHE DHL G+LFID Sbjct: 117 HYRLTADGLLARALQHECDHLEGVLFIDK 145 >gi|138894692|ref|YP_001125145.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2] gi|196247688|ref|ZP_03146390.1| peptide deformylase [Geobacillus sp. G11MC16] gi|134266205|gb|ABO66400.1| Polypeptide deformylase [Geobacillus thermodenitrificans NG80-2] gi|196212472|gb|EDY07229.1| peptide deformylase [Geobacillus sp. G11MC16] Length = 157 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +P P+L + + + + L+D+M E M + DG+GLAA Q+G+ ++ V Sbjct: 1 MSVLPIVTYPAPVLEQPCARVTVFDRQLGRLLDDMYETMIAADGVGLAAPQVGIAKQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R INP II + + EGCLS P +V R+ ++ VR + + Sbjct: 61 VDIGDEHGRIE---LINPVIIEARGE-QIDVEGCLSFPGLFGEVPRANYVKVRAQNRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A G LA LQHE+DHL+G+LF + R Sbjct: 117 LFTLSATGFLARALQHEIDHLHGVLFTSKVIR 148 >gi|300726436|ref|ZP_07059884.1| peptide deformylase [Prevotella bryantii B14] gi|299776284|gb|EFI72846.1| peptide deformylase [Prevotella bryantii B14] Length = 185 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 99/174 (56%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI +M + + +++G+GLAA QIG RLVVI Sbjct: 1 MILPIYVYGQPVLRKVASDITPDYPELKQLIQDMFQTLDNSNGVGLAAPQIGKAIRLVVI 60 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYM 115 DL + + VFIN I+ + D +EGCLSIP +V R I V+YM Sbjct: 61 DLDILKDEFPEYEGFRKVFINAHILEYDDTQESRMEEGCLSIPGLSENVVRPTRIHVKYM 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + +G A +QHE DHL GI+++D ++ L+++MI K+ +++ + Sbjct: 121 DENFVEHDEWVEGYKARVMQHEFDHLEGIMYVDKVNALRKNMIGGKLKNIMKGK 174 >gi|15835247|ref|NP_297006.1| peptide deformylase [Chlamydia muridarum Nigg] gi|270285419|ref|ZP_06194813.1| peptide deformylase [Chlamydia muridarum Nigg] gi|270289433|ref|ZP_06195735.1| peptide deformylase [Chlamydia muridarum Weiss] gi|301336816|ref|ZP_07225018.1| peptide deformylase [Chlamydia muridarum MopnTet14] gi|13878461|sp|Q9PK41|DEF_CHLMU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|7190671|gb|AAF39461.1| polypeptide deformylase [Chlamydia muridarum Nigg] Length = 181 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+V+ PI++I ++ L+ +M E M G+GLAA Q+G L ++ Sbjct: 1 MIRDLEYYDSPILRKVAAPIDEITDELRQLVLDMSETMTFYKGVGLAAPQVGHSVALFIM 60 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P VFINP I S+ EGCLSIP R +V R ITV Sbjct: 61 GVEKELDDGELIFCDFPKVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVTAK 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167 + + Q + +G LA + HE DHL+G+L+ID +S + K + K+ + Sbjct: 121 NLDGQPFSMTLEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173 >gi|297202274|ref|ZP_06919671.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] gi|197710208|gb|EDY54242.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] Length = 216 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTEFGEELDQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D QD R++ V NPK++ D EGCLS+P A + R + V D Sbjct: 100 DCQDDEGRRHVGVVCNPKLVDLPADRRQLDESNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|313893407|ref|ZP_07826979.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412] gi|313442048|gb|EFR60468.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412] Length = 162 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 4/154 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+L++V+ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLDVVKAGHPVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVSKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D Q + + INP+I T ++ V EGCLS+P Y DV+R ITV+ +D + + Sbjct: 61 VDDQVGSG---LIALINPEI-THAEGSQVGPEGCLSVPGYYGDVERFNKITVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I A+G LA QHE+DHL G LFI+ + L+ Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150 >gi|301168570|emb|CBW28160.1| peptide deformylase [Bacteriovorax marinus SJ] Length = 197 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 90/160 (56%), Gaps = 15/160 (9%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +P P+L++V+ P+ + + D+ L +ML MY GIGLAA QIG RL V+D+ Sbjct: 19 IFTYPAPVLKKVAEPVTEFDDDLRALCKDMLFTMYHAPGIGLAAPQIGKSIRLFVMDIDY 78 Query: 66 HAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 NPM+FINP I + +Y+EGCLS+P +VKR+ IT Sbjct: 79 DREEVTRADGSSEHVLSNFNPMIFINPVISNKHGEI-LYEEGCLSVPGIYEEVKRAKTIT 137 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V Y D + I AD LL+ CLQHE DHL GI+F++ LS Sbjct: 138 VDYQDMWGEKHSIDADELLSICLQHENDHLEGIVFLERLS 177 >gi|239978163|ref|ZP_04700687.1| polypeptide deformylase [Streptomyces albus J1074] Length = 183 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 75/146 (51%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + + L++++ MY+ G+GLAA QIGV R+ V D Sbjct: 13 VRPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D R++ +NP+++ EGCLS+P A +R V +D + + Sbjct: 73 CPDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPR 132 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 ++ G A CLQHE DHL+G L++D Sbjct: 133 TVHGTGFFARCLQHESDHLDGTLYVD 158 >gi|307150582|ref|YP_003885966.1| peptide deformylase [Cyanothece sp. PCC 7822] gi|306980810|gb|ADN12691.1| peptide deformylase [Cyanothece sp. PCC 7822] Length = 187 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 95/161 (59%), Gaps = 2/161 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ ++ I K++ + L ML+ MYS +GIGLAA Q+ V +L+V+D + Sbjct: 18 EIHYLGDRVLRQPAKRIAKVDDAVRQLAKEMLQTMYSANGIGLAAPQVAVNKQLLVVDCE 77 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INP+I FS D ++EGCLSIP DV R I V + D + + + + Sbjct: 78 PDNATNQPIILINPQITHFSRDLCQFEEGCLSIPGVYLDVVRPKAIEVSFKDESGRPKKL 137 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A GLLA +QHE+DHLNG++F+D + +T+++ K Sbjct: 138 KATGLLARVIQHEMDHLNGVMFVDRVGNN--LALTEELKKH 176 >gi|20807950|ref|NP_623121.1| peptide deformylase [Thermoanaerobacter tengcongensis MB4] gi|23396539|sp|Q8R9T0|DEF_THETN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|20516520|gb|AAM24725.1| N-formylmethionyl-tRNA deformylase [Thermoanaerobacter tengcongensis MB4] Length = 159 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 95/153 (62%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR+ ++P+ +INS I+ ++++M E MY DG+GLAA Q+G+L RLVV Sbjct: 1 MAIRYIRKIGDPVLRKKAKPVTEINSHIITILEDMAETMYLNDGVGLAANQVGILRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I+ + + + EGCLSIP +VKR + VRY+D Sbjct: 61 IDVGE-----GLLELINPEIV-YEEGEQIGPEGCLSIPGVFGEVKRPQKVKVRYLDREGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHL G+LF+D + R Sbjct: 115 VKEIVGEDLLARALCHEIDHLEGVLFVDKVIRF 147 >gi|259417291|ref|ZP_05741210.1| peptide deformylase [Silicibacter sp. TrichCH4B] gi|259346197|gb|EEW58011.1| peptide deformylase [Silicibacter sp. TrichCH4B] Length = 165 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +I + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTTRTCLPWPDKRLRTAATEVSEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+I+ S + ++E ++P A +KR +TVR+++ + Sbjct: 61 VD--GSTERGRAVRLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFLNEDGV 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ AT +QH++DHLNG ++ D+LS++KRDM+ KK K + Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLIKKARKFAR 165 >gi|154149172|ref|YP_001405640.1| peptide deformylase [Campylobacter hominis ATCC BAA-381] gi|153805181|gb|ABS52188.1| peptide deformylase [Campylobacter hominis ATCC BAA-381] Length = 171 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 61/171 (35%), Positives = 102/171 (59%), Gaps = 4/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L + S+ +EK + ++ +D+M E M S GIGLAA+Q+G R +VI Sbjct: 1 MILEILTYPNKKLYQKSKKVEKFDDELGKFLDDMYETMISKKGIGLAAIQVGRPIRAIVI 60 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++N + INP+I+T + +YQEGCLS+P Y DVKR+ F+ + + + Sbjct: 61 NLVDENDEQKKENLLEIINPEILTQEGEI-IYQEGCLSVPGYYEDVKRAEFVKLGFQNRF 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + + LLA C+QHE+DHL+G LFI+ + KR K+ K ++ + Sbjct: 120 GETKEMEVQELLAVCIQHEIDHLDGHLFIEKIGYNKRKKFDKEFKKHLKEK 170 >gi|308182949|ref|YP_003927076.1| peptide deformylase [Helicobacter pylori PeCan4] gi|308065134|gb|ADO07026.1| peptide deformylase [Helicobacter pylori PeCan4] Length = 175 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKG-TIIYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169 >gi|150020729|ref|YP_001306083.1| peptide deformylase [Thermosipho melanesiensis BI429] gi|149793250|gb|ABR30698.1| peptide deformylase [Thermosipho melanesiensis BI429] Length = 165 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 99/164 (60%), Gaps = 6/164 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + ++ DPILR+ ++ ++ + + ++ML+ MY DG+GLAA Q+G+ R V+D Sbjct: 3 IRLYGDPILRKSAKAVKDF-KYLQEIKEDMLKTMYLEDGVGLAAPQVGLSLRFFVMD--- 58 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ +NP+II S++ + +EGCLS+P +V+R ++ +++ D + Q Sbjct: 59 --DGSGPLFIVNPEIIAHSEEKEIGEEGCLSLPGIFENVERYKWVKLKFQDEYGKVQTRL 116 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G A +QHE DHL+GILFIDHL + + ++SK++++R Sbjct: 117 FEGYSARIVQHERDHLDGILFIDHLPNAVKRRLAPELSKIMRMR 160 >gi|67459122|ref|YP_246746.1| polypeptide deformylase [Rickettsia felis URRWXCal2] gi|67004655|gb|AAY61581.1| Polypeptide deformylase [Rickettsia felis URRWXCal2] Length = 183 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ + +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQTLNIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P+VFINP+I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 N-NKSSPIVFINPEITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELE 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG F+D++S+LKRD + KKM K ++L Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYVSKLKRDTLLKKMLKHIKL 171 >gi|160945220|ref|ZP_02092446.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii M21/2] gi|158442951|gb|EDP19956.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii M21/2] gi|295105555|emb|CBL03099.1| peptide deformylase [Faecalibacterium prausnitzii SL3/3] Length = 178 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G++ RL V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMMRRLFV 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P + F+NP+I+ S++ EGCLS P + V R + VR Sbjct: 61 VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPVAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D N + + ADGLL C+QHE DHL+GI ++ Sbjct: 121 AQDRNGEWFELEADGLLGRCIQHENDHLDGITIME 155 >gi|208434704|ref|YP_002266370.1| polypeptide deformylase [Helicobacter pylori G27] gi|238058212|sp|B5Z7F5|DEF_HELPG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|208432633|gb|ACI27504.1| polypeptide deformylase [Helicobacter pylori G27] Length = 174 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|331091587|ref|ZP_08340423.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA] gi|330403614|gb|EGG83170.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA] Length = 157 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L + + ++ I + LI++M + MY G+GLAA Q+G+L R+V Sbjct: 1 MAIREIRKIGDEVLTKKCKEVKTITPRTVELIEDMFDTMYDEMGVGLAASQVGILKRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P++ INP+II S + EGCLS+P V R + VR D + Q Sbjct: 61 IDVGE-----GPILLINPEIIETSGE-QTGDEGCLSVPGKAGQVTRPFYAKVRACDIDMQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I +GLLA HE+DHL+G L++D + Sbjct: 115 PFEIEGEGLLARAFCHEIDHLDGHLYVDKVE 145 >gi|194368702|pdb|3CPM|A Chain A, Plant Peptide Deformylase Pdf1b Crystal Structure Length = 193 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 90/162 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 19 IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 79 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 138 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A QHE DHL G+LF D ++ D I +++ L + Sbjct: 139 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 180 >gi|88608268|ref|YP_506280.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama] gi|123763725|sp|Q2GE16|DEF_NEOSM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|88600437|gb|ABD45905.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama] Length = 186 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 108/180 (60%), Gaps = 13/180 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M L+I PDP+L VS + ++ + +D+MLE MY GIGLAAVQ+GVL R++V Sbjct: 1 MALLALIIEPDPLLHEVSEAVAGLSDEKRVFLDDMLETMYHCGGIGLAAVQVGVLERIIV 60 Query: 61 IDLQ-------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 +D+ + P F+NP+II FS + EGCLS+P+ ++ R Sbjct: 61 VDVPVGKEWHSSPLNHVGYKSSGGPYYFVNPEIIEFSQNLVPADEGCLSLPEQHYEIIRP 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + V+Y++ + + ++ A+G LA C+QHE+DHLNG L++ HLS+LK D+ KK +++ + Sbjct: 121 DAVVVKYLNYDGEECLLKANGWLARCIQHEMDHLNGRLYVSHLSKLKHDLAIKKAAEIKK 180 >gi|114766696|ref|ZP_01445635.1| peptide deformylase [Pelagibaca bermudensis HTCC2601] gi|114541086|gb|EAU44141.1| peptide deformylase [Roseovarius sp. HTCC2601] Length = 164 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + P+E I +I + +M++ M + G+GL A QIGV+ RL V Sbjct: 1 MTARPCIPWPDKRLRSPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R P+ NP+I+ S + E ++P A ++R +TVR+++ + Sbjct: 61 VDASE--ERGQPVRMANPEILHASVKLRSHDEASPNLPGVWAKIERPRAVTVRFLNEAGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL AT +QH++DHLNG ++ DHLS++KRD++ ++ K Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGKMYFDHLSKVKRDILLRRAKK 162 >gi|315608229|ref|ZP_07883220.1| peptide deformylase [Prevotella buccae ATCC 33574] gi|315250099|gb|EFU30097.1| peptide deformylase [Prevotella buccae ATCC 33574] Length = 181 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65 I+ P+LR+V+ I + LI +M E + +++G+GLAA QIG R+ VIDL Sbjct: 2 IYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVIDLDVLS 61 Query: 66 ---HAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +INP I+ F + +EGCLSIP +V R I V+Y D + Sbjct: 62 DDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKYRDTDFV 121 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +F+D +S L++ +I K+ +++ + Sbjct: 122 EHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILKGK 170 >gi|254465693|ref|ZP_05079104.1| peptide deformylase [Rhodobacterales bacterium Y4I] gi|206686601|gb|EDZ47083.1| peptide deformylase [Rhodobacterales bacterium Y4I] Length = 165 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I ++ + ++M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTVRTCLPWPDKRLRTKAEEVTEITDEVREIWNDMVDTMEAMPGVGLAANQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D A R + NP+I+ S + + E ++P A +KR +TVRY++ Sbjct: 61 VD--GSAERGRAVKLANPEILHASIELREHDEASPNLPGVSAKIKRPRAVTVRYLNEQGM 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 G+ AT +QH++DHLNG ++ D LS++KRDM+ +K KL Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLIRKAKKLT 164 >gi|308184577|ref|YP_003928710.1| peptide deformylase [Helicobacter pylori SJM180] gi|308060497|gb|ADO02393.1| peptide deformylase [Helicobacter pylori SJM180] Length = 174 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIEAGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|282866652|ref|ZP_06275694.1| peptide deformylase [Streptomyces sp. ACTE] gi|282558554|gb|EFB64114.1| peptide deformylase [Streptomyces sp. ACTE] Length = 212 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + R + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECRTVTEFDDELGRLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ NP + + + EGCLS+P A++ R + VR D Sbjct: 96 DCLDDDGVRHVGAVCNPVLEELAPERRNLDASNEGCLSVPTAYAELARPDYAVVRGQDAE 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R K+M + Sbjct: 156 GNDVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMEE 201 >gi|254372091|ref|ZP_04987584.1| hypothetical protein FTCG_01232 [Francisella tularensis subsp. novicida GA99-3549] gi|151569822|gb|EDN35476.1| hypothetical protein FTCG_01232 [Francisella novicida GA99-3549] Length = 174 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 5/168 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 3 MSLEILNYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D+ +NP + + +EGCLS P A V R+ + ++ ++ Sbjct: 63 IM--YDNLEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+ Sbjct: 121 GDEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 168 >gi|260778893|ref|ZP_05887785.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] gi|260605057|gb|EEX31352.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] Length = 168 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 105/168 (62%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + I + LID+MLE +Y+ ++GIGLAA Q+G +V Sbjct: 1 MAVLKILTAPDPKLKIKAEKVSDI-QSVQTLIDDMLETLYATSNGIGLAATQVGHREAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL + R P++ +NP+++ + ++ QEGCLS+PDY ADV+R + V +D + Sbjct: 60 IIDLSES--RDQPLILVNPEVVE-GKNRAMGQEGCLSVPDYYADVERYTSVVVEALDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I +D LA +QHE+DHL G LFID+LS LK+ M KK+ K ++ Sbjct: 117 EPVRIESDDFLAIVMQHEIDHLAGNLFIDYLSPLKQRMALKKVKKHIK 164 >gi|225028093|ref|ZP_03717285.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353] gi|224954563|gb|EEG35772.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353] Length = 158 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 96/161 (59%), Gaps = 5/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP L +V +P++KI I LI++M + MY G+GLAA Q+G+L R+ V Sbjct: 1 MAIRKIRFIGDPCLNKVCKPVQKITPSIETLIEDMFDTMYEARGVGLAAPQVGILRRICV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D ++P++ INP+II + + +EGCLSIP A V R+ ++ V+ D Sbjct: 61 IDVMD----EDPIILINPEIIETAGE-QTDEEGCLSIPGKCASVTRADYVKVKSFDMELN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 II +GL A LQHE+DHL+G+L+ + + D+ ++ Sbjct: 116 PVIIEGEGLRARALQHEIDHLDGVLYGERANEPYHDVEEEE 156 >gi|85700143|gb|ABC74521.1| polypeptide deformylase [Helicobacter pylori] gi|85700145|gb|ABC74522.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|71907756|ref|YP_285343.1| formylmethionine deformylase [Dechloromonas aromatica RCB] gi|71847377|gb|AAZ46873.1| Formylmethionine deformylase [Dechloromonas aromatica RCB] Length = 204 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P++ +P+L V++ + + S++ LI++M + M + G+GLAA QIG+ ++V Sbjct: 29 MAARPILRMGEPLLFEVAKAVTEFGTSELRALIEDMFDSMEAAGGVGLAAPQIGIGLQMV 88 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + A V INP I D+ + EGCLS+P R +V R I + Sbjct: 89 IFGFEKSERYPDAEAVPLTVLINPLITPVGDEEELGWEGCLSVPGLRGEVPRHTRIRYQG 148 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D +G A +QHE DHL G L+ + R T Sbjct: 149 FDPEGTPIDRTVEGFHARVVQHECDHLIGRLYPSRIRDFSRFGFT 193 >gi|126733796|ref|ZP_01749543.1| Peptide deformylase [Roseobacter sp. CCS2] gi|126716662|gb|EBA13526.1| Peptide deformylase [Roseobacter sp. CCS2] Length = 153 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 78/147 (53%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+L + P+E ++ + L+ +M E MY G GLAA Q+GV R+ V Sbjct: 1 MAVRQIRFEGDPVLLETAAPVEAFDASLATLVRDMFETMYDAPGRGLAAPQVGVSRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D PM+F+NP+I +++ ++ E CLSIPD DV R ++ +++ D + Sbjct: 61 VDTTWKEADPAPMIFVNPQITAHAEEEALGTEACLSIPDQSFDVSRPVWVALKWQDLDGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 + A C+ HE DHL G+L Sbjct: 121 WHEGRFTDVDAVCICHEFDHLEGLLIT 147 >gi|212635128|ref|YP_002311653.1| peptide deformylase [Shewanella piezotolerans WP3] gi|212556612|gb|ACJ29066.1| Formylmethionine deformylase [Shewanella piezotolerans WP3] Length = 163 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 74/165 (44%), Positives = 102/165 (61%), Gaps = 5/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ PD L+R + P++ I++ + ID+++E MY TD GIGLAA Q+G L+ ++ Sbjct: 1 MAVLDILTIPDVRLKRKAEPVKDIDA-VQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R PMV INP+I+ +F +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSE--ERDQPMVLINPEIVETRGEFQ-GEEGCLSIPGYRAKVNRHEGVKVTALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q I D LA LQHE+DHL GI+F DHLS LK+ + KK+ K Sbjct: 117 QAFEIDTDEFLAIVLQHEMDHLKGIVFTDHLSMLKQQIALKKVKK 161 >gi|154485069|ref|ZP_02027517.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC 27560] gi|149734022|gb|EDM50141.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC 27560] Length = 165 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 1/151 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +P LR++ +P++++N LI +M + MY +G+GLAA Q+G+L R+ V Sbjct: 1 MAIRNIRELGEPCLRKICKPVKEVNLRTKILIGDMFDTMYEANGVGLAAPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D P VFINP+II + EGCLS+P V R+ + V+ + N + Sbjct: 61 VDCGDEEGNSVPYVFINPEIIDR-EGVQTGYEGCLSVPGKSGMVPRAQKVKVKAFNENME 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A+GLLA C+ HE DHL+GI+++D + Sbjct: 120 EFEMEAEGLLARCILHENDHLDGIVYVDKVE 150 >gi|169831745|ref|YP_001717727.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C] gi|238688341|sp|B1I504|DEF_DESAP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169638589|gb|ACA60095.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C] Length = 154 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +PDPILR +R + KI I L N+++ M + G+GLAA QIGV R++V Sbjct: 1 MAVFQIVQYPDPILREKAREVRKITPQIERLAVNLVDTMRRSGGVGLAAPQIGVSKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ KNP+V INP+I+ D +EGCLS+P V+R +TVR + + Sbjct: 61 VE----DPEKNPIVLINPEIVRLEGDKETAEEGCLSVPGVWGQVERRMCLTVRGYNLEGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 +G A QHE+DHL+GI+F+D + + + Sbjct: 117 QVAYLVEGFTARAFQHEIDHLDGIVFLDRATTIYKRK 153 >gi|282850137|ref|ZP_06259516.1| peptide deformylase [Veillonella parvula ATCC 17745] gi|282579630|gb|EFB85034.1| peptide deformylase [Veillonella parvula ATCC 17745] Length = 162 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 62/154 (40%), Positives = 94/154 (61%), Gaps = 4/154 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+L++V+ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLDVVKAGHPVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVAKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D Q + + INP+I T ++ V EGCLS+P Y DV+R +TV+ +D + + Sbjct: 61 VDDQSGSG---LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFNKVTVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I A+G LA QHE+DHL G LFI+ + L+ Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150 >gi|226304981|ref|YP_002764939.1| peptide deformylase [Rhodococcus erythropolis PR4] gi|226184096|dbj|BAH32200.1| peptide deformylase [Rhodococcus erythropolis PR4] Length = 199 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 8/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L + + P+ + ++I LI +M E M + +G+GLAA Q+GV R+ V Sbjct: 1 MAILPIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVSLRVFV 60 Query: 61 IDLQ--DHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D D + + V +NP + T D EGCLS+P + R+ + V Sbjct: 61 YDCPGDDRSSERRRGVVVNPVLETSEIPQTMPDPEEDFEGCLSVPGEQFPTGRADWAKVT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + G A LQHE HL+G L+ D L + KK+ K Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVLIG-RNARAAKKIIK 170 >gi|329939688|ref|ZP_08288989.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] gi|329301258|gb|EGG45153.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] Length = 216 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTEFDEELAKLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NPK++ + EGCLS+P + R + V D Sbjct: 100 DCPDDEGVRHVGVVCNPKLVELPAERRRLDDNNEGCLSVPTAYVSLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205 >gi|302517742|ref|ZP_07270084.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|318080637|ref|ZP_07987969.1| polypeptide deformylase [Streptomyces sp. SA3_actF] gi|302426637|gb|EFK98452.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 183 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 77/167 (46%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL ++ P+L +R + L++++ MY+ G+GLAA QIG R+ V D Sbjct: 13 VRPLSLYGAPVLTTPARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D R++ +NP+++ EGCLS+P A R V + + Sbjct: 73 CPDDEDRRHLGHLVNPRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARR 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G A CLQHE DHL G L++D L + + ++ + R Sbjct: 133 RVEGTGFFARCLQHEYDHLEGGLYVDRLDARRHRKVLREAGRTGWGR 179 >gi|78044307|ref|YP_360316.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901] gi|123743168|sp|Q3AC18|DEF_CARHZ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|77996422|gb|ABB15321.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901] Length = 152 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 98/156 (62%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V DPIL+ +++PI++I +I+ L++NM + MY+ +G+GLAA QIGV R +V Sbjct: 1 MAVYKVVEIGDPILKEIAKPIKEITPNIIKLLENMADTMYAYNGVGLAAPQIGVSKRAIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INP+II S + EGCLS+P + +V R+ +TV+ ++ + Sbjct: 61 VDVGE-----GLIELINPEIIEVSGE-EKDIEGCLSVPGVQGEVVRAKKVTVKGLNRYGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 +I A+GLLA QHE+DHLNGILF++ + R Sbjct: 115 EIVIPAEGLLARAFQHEIDHLNGILFVEKADNIVRK 150 >gi|260578786|ref|ZP_05846693.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] gi|258603084|gb|EEW16354.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] Length = 168 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 8/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + F DP+L+ V+ P++ ++ L+++MLE M G+GLAA QIG+ R Sbjct: 1 MTVLNMRYFGDPVLKTVADPVKPEQIQDAATRRLVEDMLETMDHYGGVGLAANQIGITRR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + V D INP D+ EGCLSIPD DV R+ + +R + Sbjct: 61 IFVFDCDGDRG-----HVINPTWEAVGDETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTV 115 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + L+A C+QHE DHL+G LFI HLS +R K++ + + Sbjct: 116 DGEQVDREVTDLMARCVQHETDHLDGTLFIQHLSAEQRREAMKQIRESEWFK 167 >gi|225452422|ref|XP_002276964.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296087647|emb|CBI34903.3| unnamed protein product [Vitis vinifera] Length = 275 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 87/166 (52%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V +PDPILR ++ I + ++ L+D M +VMY TDGIGL+A Q+G+ +L+V Sbjct: 81 APLKIVEYPDPILRAKNKLISTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF 140 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +V +NP++ +S ++ EGCLS P ADV+R + + D Sbjct: 141 NPVGERGEGEEIVLVNPRVNKYSKKIVLFNEGCLSFPGIYADVERPESVKIDARDITGAR 200 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +I GL A QHE DHL G LF D ++ D I + L + Sbjct: 201 FMINLSGLPARVFQHEFDHLQGTLFFDRMTEEVLDSIHANLQDLER 246 >gi|57242491|ref|ZP_00370429.1| polypeptide deformylase [Campylobacter upsaliensis RM3195] gi|57016776|gb|EAL53559.1| polypeptide deformylase [Campylobacter upsaliensis RM3195] Length = 174 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 101/164 (61%), Gaps = 3/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ L S P+EK + ++ L+D+M E M S+ G+GLAA+Q+ V R+ ++ Sbjct: 1 MVRKIITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRIFIV 60 Query: 62 DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D +++ + INP I +D+ V EGCLS+PD+ +V+R+ IT++Y D Sbjct: 61 NIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRNRKITLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + + + A+ LA +QHE DHL+G LFI+ L KR+ +K+ Sbjct: 121 GKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKEF 164 >gi|319950533|ref|ZP_08024443.1| peptide deformylase [Dietzia cinnamea P4] gi|319435783|gb|EFV90993.1| peptide deformylase [Dietzia cinnamea P4] Length = 184 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +F DP+LR + P+ + + + ++++ + +G GLAA QIG+ R+ V Sbjct: 1 MPVHPVRLFGDPVLRTAADPVTSFDDRLARTVTDLMDTVAHEEGAGLAAPQIGLSTRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +NP+ ++ + EGCLSIP +R A + R D Sbjct: 61 YTCGGRRG-----HLVNPEWEAIGNETTEVNEGCLSIPGVSMPTERFARVRARGFDMKGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 A+G+LA +QHE+DHL+G+LF+ L+ +R ++ Sbjct: 116 PVSFEAEGILARAVQHEIDHLDGVLFLQRLTPERRRAAMAEIR 158 >gi|146297087|ref|YP_001180858.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410663|gb|ABP67667.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 164 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 102/166 (61%), Gaps = 7/166 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + I+ D ILR+ S+ +EK + + +L+D+M E MY +GIGLAA Q+G+L R +V+D Sbjct: 2 RKIRIYEDEILRKKSKTVEKFDKRLHDLLDDMKETMYEANGIGLAAPQVGILKRAIVVDP 61 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D A + +NP+I +S+ + EGCLS+P+ +V+R + VR + + + Sbjct: 62 GDGA-----IELVNPQI-EYSEGSQIDIEGCLSVPNVWGEVERPKKVIVRGQNRHGEEIK 115 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL-KRDMITKKMSKLVQL 168 I A+ LLA L HE+DHL+GILFID + R + + KK SK ++ Sbjct: 116 IEAEDLLARALCHEIDHLDGILFIDKVIRFVTEEEVEKKRSKGQKM 161 >gi|118594097|ref|ZP_01551444.1| peptide deformylase [Methylophilales bacterium HTCC2181] gi|118439875|gb|EAV46502.1| peptide deformylase [Methylophilales bacterium HTCC2181] Length = 165 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 98/158 (62%), Gaps = 3/158 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++ + ++ LI +M E MY ++GIGLAA Q+ R++V Sbjct: 1 MAILTILTYPDPNLHKVAKRVINVDEVHKKLIKDMAETMYGSNGIGLAATQVNFHERIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + + INP+II + Y+EGCLS+P + V+R +I V+ +D + Sbjct: 61 IDISD--DKNDLLTLINPEIIQK-EGKQEYEEGCLSVPGFYEAVERFDYIKVQSLDNRGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A GLL+ C+QHE+DHL G +F+++LS LK++ I Sbjct: 118 SFEIEAHGLLSVCIQHEMDHLEGKVFVEYLSPLKQNRI 155 >gi|16330073|ref|NP_440801.1| peptide deformylase [Synechocystis sp. PCC 6803] gi|2499924|sp|P73441|DEF_SYNY3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1652560|dbj|BAA17481.1| polypeptide deformylase [Synechocystis sp. PCC 6803] Length = 187 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 56/143 (39%), Positives = 87/143 (60%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I K++ I L ML+ MYS +GIGLAA Q+G+ +L+V+D + Sbjct: 22 LGDKVLRQPAKRIAKVDDSIRKLAKEMLQTMYSANGIGLAAPQVGINKQLLVVDCEQDKP 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + P++ INP+I S++ V +EGCLS+P+ DV R I V Y D + + Q Sbjct: 82 DEPPLIMINPQITRTSEELCVVEEGCLSVPNVYMDVTRPRAIEVTYKDEHGRPQKRLFAE 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 L A +QHE+DHLNG++F+D + Sbjct: 142 LTARVIQHEMDHLNGVMFVDRVD 164 >gi|317121756|ref|YP_004101759.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM 12885] gi|315591736|gb|ADU51032.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM 12885] Length = 550 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 60/150 (40%), Positives = 93/150 (62%), Gaps = 6/150 (4%) Query: 5 PLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+V +P+LR ++P+ K+N ++ L+D M MY+ DGIGLAA Q+GV R+VV+D+ Sbjct: 24 PIVKGADEPVLRTPAQPVAKVNREVRQLLDRMAATMYAADGIGLAAPQVGVSKRIVVVDV 83 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D + INP+I+ ++ EGCLS+P A+V+R A + V +D + + Sbjct: 84 GD-----GLIELINPEIVRRGEETETAYEGCLSLPRLLAEVERPATVQVTALDRHGRRIW 138 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153 I +GLLA CLQHE+DHL+G+L D ++ Sbjct: 139 IEGEGLLARCLQHEIDHLDGVLITDRARKV 168 >gi|289578510|ref|YP_003477137.1| peptide deformylase [Thermoanaerobacter italicus Ab9] gi|289528223|gb|ADD02575.1| peptide deformylase [Thermoanaerobacter italicus Ab9] Length = 159 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 96/153 (62%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ ++P+ +INS ++ ++D+M++ MY +G+GLAA Q+G+L RL+V Sbjct: 1 MAIRYIRKIGDEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I+ + + V EGCLSIP +VKR + VRY+D + Sbjct: 61 IDIGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVRYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHLNG+LFID R Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147 >gi|121533703|ref|ZP_01665530.1| peptide deformylase [Thermosinus carboxydivorans Nor1] gi|121307694|gb|EAX48609.1| peptide deformylase [Thermosinus carboxydivorans Nor1] Length = 154 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + D +L+ + P+ KI+ + L+D+M + MY+ +G+GLAA Q+GV R++V Sbjct: 1 MSVLEIKKAGDKVLKEKAAPVGKIDRKVKQLLDDMAQTMYAAEGVGLAAPQVGVSLRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ EGCLS+P +V+R A + V ++ + + Sbjct: 61 VDVGD-----GLIELINPVIVAAEGS-ETNTEGCLSVPGVYGEVERYAQVVVEGLERSGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I GLLA LQHE+DHL+G+LFI+ L + Sbjct: 115 KVRITGTGLLARALQHEIDHLDGVLFIEKAKTLYK 149 >gi|327200558|pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) gi|327200559|pdb|3M6O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) gi|327200560|pdb|3M6P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) In Complex With Actinonin gi|327200561|pdb|3M6P|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) In Complex With Actinonin Length = 193 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 90/163 (55%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 2 EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPA 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 62 GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A QHE DHL G+LF D ++ D I +++ L + Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 164 >gi|323141161|ref|ZP_08076062.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] gi|322414304|gb|EFY05122.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] Length = 160 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 9/159 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +VI P+LR V++P+E+I+ + L+ +M E MYS DG+GLAA Q+GV R+VV Sbjct: 1 MAKLKIVIAGAPVLREVAQPVERIDKKLQRLLRDMAETMYSADGVGLAAPQVGVSKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I+ + + EGCLS+PDY +V+RS ++ + D Q Sbjct: 61 IDVGEGLYE-----LINPEIVKR-EGKVLGSEGCLSVPDYEGEVERSEYVECEFTDKTGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH---LSRLKRD 156 ++ A GLLA C+QHELDHL+GILFID +S +++ Sbjct: 115 RMLLSASGLLAICIQHELDHLDGILFIDKAKTISPKQKE 153 >gi|309811979|ref|ZP_07705745.1| peptide deformylase [Dermacoccus sp. Ellin185] gi|308434037|gb|EFP57903.1| peptide deformylase [Dermacoccus sp. Ellin185] Length = 191 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I L ++ +++I D L+++M E M + +G+GLAA Q+GV R+ V Sbjct: 1 MAVRPITIVGHKALHAPTKRVKEITDDTRALVEDMFETMEAANGVGLAANQVGVKQRIFV 60 Query: 61 IDLQDHAHRKNPM-VFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D N V INPK+ D EGCLS+P R+ + V Sbjct: 61 FDCPDDELGDNRRGVVINPKLEKGRVPAGEADEENDNEGCLSVPGEHFPTARADWAKVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + +I G A LQHE DHL+G L++D L+ R Sbjct: 121 TDLDGNEIVIEGHGFFARMLQHETDHLDGYLYLDRLTPTMR 161 >gi|258593266|emb|CBE69605.1| Peptide deformylase (PDF) (Polypeptide deformylase) [NC10 bacterium 'Dutch sediment'] Length = 169 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 1/151 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++++P P++R+ S + IN ++ ID+M+E MY+ G+GLAA Q+G L R++V Sbjct: 1 MAKLSILLYPSPVIRKKSVSVTSINGELQRFIDDMVETMYAAPGMGLAAPQVGALKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D PM INP ++ + V +EGCL IPD V R + V+ D N + Sbjct: 61 LDPSDDRTSHRPMALINPVLVA-GEGQIVDEEGCLCIPDLNEPVSRFKQVVVKAYDRNEK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I+ LLA LQHE+DHL+GILFID LS Sbjct: 120 EIILEGADLLARILQHEIDHLDGILFIDRLS 150 >gi|297621379|ref|YP_003709516.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044] gi|297376680|gb|ADI38510.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044] Length = 174 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 5/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K L + DP LR+ +P+E+IN++I L++NM+E + +GIGLAA QI RL + Sbjct: 1 MKLELAYYGDPFLRKKCKPVEEINNEIRELVENMVETLVEYNGIGLAAPQIKQDLRLFIT 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + +VFINP+I+++S++ QEGCLSIP +V R I ++ D Sbjct: 61 AVPKELPNGDWEQGELIVFINPEIVSYSEETEDRQEGCLSIPKLYGNVNRPVRIVIKATD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +GL A C HE DH+NG+L+ID + +R ++ K+ ++ + Sbjct: 121 MEGNVFERKFEGLQARCCLHENDHINGVLYIDRIRGKERKLLEPKLREIKK 171 >gi|68536091|ref|YP_250796.1| peptide deformylase [Corynebacterium jeikeium K411] gi|68263690|emb|CAI37178.1| polypeptide deformylase [Corynebacterium jeikeium K411] Length = 168 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 8/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + F DP+L+ V+ P++ ++ L+++MLE M G+GLAA QIG+ R Sbjct: 1 MTVLNMRYFGDPVLKTVADPVKPEQIQDAGTRRLVEDMLETMDHYGGVGLAANQIGITRR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + V D INP ++ EGCLSIPD DV R+ + +R + Sbjct: 61 IFVFDCDGDRG-----HVINPTWEAVGEETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTV 115 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + L+A C+QHE DHL+G+LFI HLS +R K++ + + Sbjct: 116 DGEQVDREVTDLMARCVQHETDHLDGVLFIQHLSTEQRREAMKQIRESEWFK 167 >gi|294853733|ref|ZP_06794405.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] gi|294819388|gb|EFG36388.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] Length = 184 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 21 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMCAAPGIGITAPHIGISKRVVV 80 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 81 LELDRAAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 138 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 184 >gi|85700135|gb|ABC74517.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKILEASELLAVAVQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|22299219|ref|NP_682466.1| peptide deformylase [Thermosynechococcus elongatus BP-1] gi|39930888|sp|Q8DIB4|DEF_THEEB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22295401|dbj|BAC09228.1| polypeptide deformylase [Thermosynechococcus elongatus BP-1] Length = 188 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 61/143 (42%), Positives = 91/143 (63%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ + K++ I ++ ML+ MYS DGIGLAA Q+G+ +++VID+ Sbjct: 22 LGDRVLRQPAKRVSKVDDSIRDIARKMLQTMYSADGIGLAAPQVGINKQILVIDIHPDDP 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+V INP I FS++ V QEGCLSIP +V+R A + V Y D + Q+I A G Sbjct: 82 EAEPLVMINPVIKDFSEELEVCQEGCLSIPGVYLEVRRPAMVEVSYKDEWGRPQVIMAGG 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA +QHE+DHL G++F+D + Sbjct: 142 LLARAIQHEIDHLTGVMFVDRVE 164 >gi|194289796|ref|YP_002005703.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424] gi|193223631|emb|CAQ69638.1| putative POLYPEPTIDE DEFORMYLASE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 177 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L +V+RP+E+ N ++ LI++M + M +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP + SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNPRYPDAPTVPKTVLINPVLEMQSDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A+G A +QHE DHL GIL+ + T+ + Sbjct: 121 DLMGNRIERVAEGFHARVVQHECDHLQGILYPMRIKDFSNFGFTEVL 167 >gi|116073817|ref|ZP_01471079.1| peptide deformylase [Synechococcus sp. RS9916] gi|116069122|gb|EAU74874.1| peptide deformylase [Synechococcus sp. RS9916] Length = 201 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 63/148 (42%), Positives = 89/148 (60%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ +R I K++ + L +ML MY+ GIGLAA Q+GV +L+VIDL Sbjct: 32 DIHKLGDEVLRQEARRISKVDESVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDLD 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP+I T S Y+EGCLSIP DV R I + Y D + + + Sbjct: 92 LETPSSPPLVLINPEITTASATVDTYEEGCLSIPGVYLDVVRPTAIQLSYRDEMGRPKTM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 152 KADGLMARCIQHEMDHLKGVLFVDRVTD 179 >gi|114770092|ref|ZP_01447630.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255] gi|114548929|gb|EAU51812.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255] Length = 169 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + +PD L I I + +M + MY+ GIGLAA QIG++ L V Sbjct: 1 MAIKKFIRYPDKRLSVKCELISSITDKDHEVWKDMFDSMYNMPGIGLAACQIGIMRSLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + P NPKI+ S + QEG ++P A++KR +TVRY+D N Sbjct: 61 VDVGD--GKVEPFEMANPKILYSSGVYIENQEGSPNLPGVWANIKRPRAVTVRYIDKNGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 GL A +QH++DHLNG +F +HLS KR M+ K KL + Sbjct: 119 QIERDFVGLWAVSVQHQIDHLNGKMFFEHLSSTKRKMLINKSQKLSKQ 166 >gi|126661353|ref|ZP_01732418.1| peptide deformylase [Cyanothece sp. CCY0110] gi|126617360|gb|EAZ88164.1| peptide deformylase [Cyanothece sp. CCY0110] Length = 187 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 87/147 (59%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + D LR+ ++ I K++ I L ML+ MYS+ GIGLAA Q+ + +L+VID + Sbjct: 18 DIHVLGDRALRQPAKRITKVDDSIRKLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDCE 77 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INPKI S++ V +EGCLSIP DV R I V + D + + I Sbjct: 78 PDNPENPPLILINPKITRVSEELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRKI 137 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 A LLA +QHE+DHLNG++F+D + Sbjct: 138 QATDLLARVIQHEMDHLNGVMFVDRVE 164 >gi|85700147|gb|ABC74523.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNS 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|164687803|ref|ZP_02211831.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM 16795] gi|164603078|gb|EDQ96543.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM 16795] Length = 157 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 92/152 (60%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +++IN I+ L+D+M + MY DG+GLAA Q+G+L R+VV Sbjct: 12 MALRQIVKIGEPVLRKKSKVVKEINDRIIELLDDMADTMYEADGVGLAAPQVGILKRVVV 71 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + INP+II ++ + EGCLS+P DV R + VR + + Sbjct: 72 IDIGD-----GLIELINPEIIETEGEY-LDNEGCLSVPGECGDVLRPYRVKVRAQNRFGE 125 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I + LLA HE+DHL+GIL++D + + Sbjct: 126 TVEIEGEELLARAFCHEIDHLDGILYVDKVIK 157 >gi|312134885|ref|YP_004002223.1| peptide deformylase [Caldicellulosiruptor owensensis OL] gi|311774936|gb|ADQ04423.1| peptide deformylase [Caldicellulosiruptor owensensis OL] Length = 166 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I+ D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRIYEDEILRKKSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+I +S+ V EGCLS+P+ +V+R + V D Sbjct: 61 IDIGEGA-----IELVNPQI-EYSEGSVVDVEGCLSVPNMWGEVERPQKVVVNAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+GLLA L HE+DHL+GILF+D + R Sbjct: 115 EFRLEAEGLLARALCHEIDHLDGILFVDKVIRF 147 >gi|227547872|ref|ZP_03977921.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] gi|227080057|gb|EEI18020.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] Length = 190 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++ +E+ +++ LI +M E M + G+GLAA Q+GV RL V Sbjct: 1 MTIRPIVIHGDPVLHEPTKAVEQPVAELQELIADMHETMDAAYGVGLAANQVGVPLRLFV 60 Query: 61 IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + NP++ + T D EGCLS+P R+++ V + Sbjct: 61 YHCPDGDRMRRGTVINPVLETSEVPKTMPSDDGDDDEGCLSVPGESWPTGRASWAKVTGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D N ++ +G A CLQHE+ HL+G+++ D L+ + + + Sbjct: 121 DENGDEVVVEGEGFFARCLQHEVGHLDGVVYTDVLTGRYKREAKRVIR 168 >gi|225569235|ref|ZP_03778260.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM 15053] gi|225162034|gb|EEG74653.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM 15053] Length = 157 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + +L + +P++K+ LI++M + MY G+GLAA Q+GVL R+V Sbjct: 1 MATRKIRELGEEVLTKTCKPVDKLTLRTKVLINDMFDTMYEAYGVGLAAPQVGVLKRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+II S + +EGCLS+P V R ++ VR +D + Q Sbjct: 61 IDVGE-----GPIVLINPEIIETSGE-QTGEEGCLSVPGKYGIVTRPDYVRVRALDEDMQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + + GLLA HE+DHL+G ++++ Sbjct: 115 ERELEGTGLLARAFCHEIDHLDGNMYVE 142 >gi|239835143|ref|ZP_04683470.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] gi|239821282|gb|EEQ92852.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] Length = 165 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 102/169 (60%), Gaps = 4/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V +PD LR V+ P+ +S + L ++L+ M + GIG+ A IG+ RLVV Sbjct: 1 MTVRPIVSYPDKRLRAVADPVTLFDSALQELGTDLLDTMRAAPGIGITAPHIGIAMRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + P ++NP+I+ S++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELPEAG----PKFYVNPQILWASEEKIHHQEGSVSMPGVVDEVERHARIKIRYQDLDGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q ++GLLA C QHE+D L+GI +I LSRL+RD + K+ K + R Sbjct: 117 EQTEESEGLLAVCHQHEIDQLDGIFWIQRLSRLRRDRLVKRYEKSQRQR 165 >gi|241204791|ref|YP_002975887.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858681|gb|ACS56348.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 164 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ +S + L ++L M + G+G+ A IGV+ R+ V Sbjct: 1 MPIRPILRYPHPGLKTVCAPVTAFDSSLTALAGDLLATMRAAPGVGITAAHIGVVSRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +++NP I FS + + EG +S+P +V R I RY D Sbjct: 61 LELDKADGVR---LYVNPHITWFSQETMSHVEGSVSMPGATDEVTRPRAIRFRYQDAEGA 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 VHEDGAEDFLAICVQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161 >gi|82523804|emb|CAI78547.1| polypeptide deformylase [uncultured Chloroflexi bacterium] Length = 176 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDP+LRR +R + ++ LID+M+E M S G+GLAA Q+ ++++ Sbjct: 1 MSIREIVFTPDPVLRRKARKVTDFGPELQTLIDDMVETMRSAPGVGLAAPQVAESWQVIT 60 Query: 61 IDLQDHAH---------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 I+ + + +NP+I S++ V EGCLS+P +V+R+ +T Sbjct: 61 IEYSEESEEGEEGEEKVPPKLYTLVNPQITRASNETIVGTEGCLSVPGIVGEVERNEAVT 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 V+ + Q I A LA QHE+DHL G+LF D L R Sbjct: 121 VKAQNRRGQPVTIKAQDWLARIFQHEIDHLEGVLFTDLTDELWR 164 >gi|317012603|gb|ADU83211.1| peptide deformylase [Helicobacter pylori Lithuania75] Length = 174 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPKEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEAIELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|291522865|emb|CBK81158.1| peptide deformylase [Coprococcus catus GD/7] Length = 159 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L DP+L +V + ++++ + L+ +MLE MY+ +G+GLAA Q+GVL R+ V Sbjct: 1 MAIRKLRYEGDPVLGKVCKEVKEMTPHLKELVQDMLETMYAAEGVGLAAPQVGVLRRVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P VF+NPKI+ + + + EGCLS+P V+R ++ D + Sbjct: 61 IDVGE-----GPYVFVNPKIVETAGE-QIGDEGCLSVPGKSGTVRRPEYVKTVAFDADMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + GL A + HE DHL+G L+++ + Sbjct: 115 PIEVEGHGLFARAMCHEFDHLDGHLYLEKVE 145 >gi|258655021|ref|YP_003204177.1| peptide deformylase [Nakamurella multipartita DSM 44233] gi|258558246|gb|ACV81188.1| peptide deformylase [Nakamurella multipartita DSM 44233] Length = 190 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 82/170 (48%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P+VI +P+L R +RP+ + ++ LI +M E + G GLAA QIG RL Sbjct: 1 MTIRPIVICGEPVLHRPTRPVTEFGTPELNTLIQDMFETNEAAHGAGLAANQIGDDRRLF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + D D R+ INP I T D EGCLS+P R+ + V+ Sbjct: 61 IYDCPDQGSRRR-GYIINPTIETSPIPTNMPDPDDDSEGCLSVPGENFPTGRADWARVKG 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + + G A CLQHE DHL+G L+ID L + K + + Sbjct: 120 FDSDGEPIEVEGTGFFARCLQHETDHLDGHLYIDRLIGKNQKRAFKAVRE 169 >gi|308177361|ref|YP_003916767.1| peptide deformylase [Arthrobacter arilaitensis Re117] gi|307744824|emb|CBT75796.1| peptide deformylase [Arthrobacter arilaitensis Re117] Length = 190 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + ++ +P+L + + + + + + L+ +M M G+GLAA QIG+ R+ Sbjct: 1 MPIRQITVYGEPVLHKRAVEVTEFDDALRALVADMHLTMDEAHGVGLAAPQIGLGLRMFT 60 Query: 61 IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D V INPK+ EGCLS+P ++R+ + V Sbjct: 61 YVFADQDDAPERGVVINPKLTLSKVSQAPAHPDEDSEGCLSVPGLNYPLQRADYAKVEGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D A G A +QHE DHL+G L++D L K L Sbjct: 121 DEFGNPISFEAHGWFARIMQHEYDHLDGYLYVDKLQPRWEKRWKKAKKAL 170 >gi|284031594|ref|YP_003381525.1| peptide deformylase [Kribbella flavida DSM 17836] gi|283810887|gb|ADB32726.1| peptide deformylase [Kribbella flavida DSM 17836] Length = 201 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 3/167 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ + + ++ RV++P+ D+ L+ +M+ M + +G+GLAA Q+GV +L V D Sbjct: 10 VLPITRWGEDVMHRVNQPVTDFGDDLHKLVADMVATMNAAEGVGLAANQVGVDLQLFVFD 69 Query: 63 LQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D ++ V NPK+ +EGCLS+P R + V +D + Sbjct: 70 CPDRDGVRHQGVVCNPKLELPEGKDRHLDEGEEGCLSLPGAFTKCARPDYAKVTGVDEHG 129 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +GLLA CLQHE DH G++F D LSR + + + +L Sbjct: 130 NPVSYEGNGLLARCLQHETDHTQGMVFGDRLSRKYKKRLFAEAEELA 176 >gi|297182175|gb|ADI18346.1| N-formylmethionyl-tRNA deformylase [uncultured actinobacterium HF4000_04C13] Length = 180 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LRR + + ++ ++ L D+M MY GIGLAA Q+GV R V Sbjct: 1 MAPHQIRLIGDPVLRRPATDVTDVDGALVRLTDDMFTTMYEAPGIGLAAPQVGVQKRFFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D H + V +NP+II SD ++EGCLS+PD ++ R + + +D + Sbjct: 61 YD-----HGEGAGVILNPRIIE-SDGEWTFEEGCLSVPDLTWEITRPKQVHLVGVDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I AD + A QHE+DHL+G+L +DHL + + + ++ R Sbjct: 115 EVSIEADEIEARLFQHEIDHLDGVLLVDHLDEDQAREARRALREMTMSR 163 >gi|77920127|ref|YP_357942.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380] gi|77546210|gb|ABA89772.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380] Length = 167 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 101/168 (60%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M K ++++P P L+ + P+ + + ++ +LI ++++ M + +G+AA QIG+ R+V Sbjct: 1 MAVKDILLYPHPALKEICTPVTQCDENVDSLIQDLIDTMVAAGHSVGVAAPQIGITRRVV 60 Query: 60 VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ +V INP+I+ + +EGC+S+PDY +V R+ + V+Y+ Sbjct: 61 VVDVSHSKLGRKENHGLIVMINPEILEQEGRTAS-REGCMSVPDYTGNVTRAESVVVQYL 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D + Q+I A G A LQHE+DHL+G+LF+D +S LK D+ +K Sbjct: 120 DRSGNKQVIRATGFEAIALQHEIDHLDGLLFLDRVSSLKTDLFRRKKR 167 >gi|255657698|ref|ZP_05403107.1| peptide deformylase [Mitsuokella multacida DSM 20544] gi|260849886|gb|EEX69893.1| peptide deformylase [Mitsuokella multacida DSM 20544] Length = 155 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P+L+ V P+EKI+ D+ L+D+M MY +DG+GLAA Q+G R+VV Sbjct: 1 MAILEIKKAGAPVLKEVCAPVEKIDKDLRKLLDDMAVTMYESDGVGLAAPQVGRPIRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID QD + INP I TF + + EGCLS+P +V+R+A + V +++ + Sbjct: 61 IDCQDDHG---LIELINPVI-TFREGTATDTEGCLSVPGIYGEVERAAKVKVEFLNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 Q + A GLLA C+QHELDHL G LFID L R Sbjct: 117 KQHLTATGLLARCIQHELDHLEGQLFIDIAKSLHR 151 >gi|242058133|ref|XP_002458212.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor] gi|241930187|gb|EES03332.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor] Length = 264 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 86/163 (52%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PDPILR ++ I ++++ L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 74 EVVKYPDPILRARNKRINAFDANLRALADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPA 133 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +V +NP + + V++EGCLS P +V R + + D + Sbjct: 134 GVKGEGEEIVLVNPVVYKSAKRLLVFEEGCLSFPGIYGNVLRPESVKIEAQDVTGAKIKV 193 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 GL A QHE DHL GILF D ++ + + +++ L + Sbjct: 194 KLSGLPARVFQHEFDHLLGILFFDRMTMDVLETVREELKNLEK 236 >gi|312197386|ref|YP_004017447.1| peptide deformylase [Frankia sp. EuI1c] gi|311228722|gb|ADP81577.1| peptide deformylase [Frankia sp. EuI1c] Length = 205 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 62/181 (34%), Positives = 85/181 (46%), Gaps = 19/181 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ + DP+LR + P+ + + L+D+M+E MY+ G+GLAA Q+GV RL V Sbjct: 1 MTVLPIRVLGDPVLRTPAGPVTVFDDRLRRLVDDMIETMYAAPGVGLAAPQVGVGLRLFV 60 Query: 61 IDLQDHAHRKN------------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 D +R + P V NP + QEGCLSIP Sbjct: 61 FDTDWQPNRPDRHEDDAVPEAAGRARGRAPRVVANPVL-ELGPGEQNDQEGCLSIPGLHY 119 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 R+A TVR +D GLLA CLQHE DHL G L++D L+ L R + + Sbjct: 120 ATARAAAATVRGVDAAGDPVEYAGTGLLARCLQHEADHLAGTLYVDRLTGLTRRSAQRAL 179 Query: 163 S 163 Sbjct: 180 R 180 >gi|300859237|ref|YP_003784220.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] gi|300686691|gb|ADK29613.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] gi|302206928|gb|ADL11270.1| Peptide deformylase [Corynebacterium pseudotuberculosis C231] gi|302331492|gb|ADL21686.1| N-formylmethionyl-tRNA deformylase [Corynebacterium pseudotuberculosis 1002] gi|308277182|gb|ADO27081.1| N-formylmethionyl-tRNA deformylase [Corynebacterium pseudotuberculosis I19] Length = 197 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 8/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P+VI DP+L + + + + ++ LI +M E M G+GLAA QIGV RL Sbjct: 1 MTVRPIVIHGDPVLHNPTAEVTEPIDSPELQELIADMYETMAVAHGVGLAANQIGVGKRL 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITV 112 V + D + INP + T D EGCLS+P R+ + V Sbjct: 61 FVFNCPDDQGHMHRGCVINPILETTEIPQTMPSDDGSDDEGCLSVPGEGFPTGRATWAKV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D + G LA C QHE+ HL+G L+ D L + K + + Sbjct: 121 TGLDEHGNPVSYEGTGFLARCFQHEVGHLDGFLYTDTLVGRYKRQAKKAIKR 172 >gi|241667516|ref|ZP_04755094.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876062|ref|ZP_05248772.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842083|gb|EET20497.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 172 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P PIL+ +++ + E+I+ D I M E+M +G+GLAA+Q+G+ R Sbjct: 1 MSLEILKYPHPILKEIAQEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + + INPKII S + +EGCLS P A V R+ + ++ ++ Sbjct: 61 IMYDNLESETPKIITIINPKIIDQSG-KIIDEEGCLSFPGVSAKVNRATRVKIKALNEFG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + D LA C+QHE+DHLNG+ F DHL LKR MI KK KL+Q Sbjct: 120 QEIEVEKDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQE 168 >gi|238019378|ref|ZP_04599804.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748] gi|237864077|gb|EEP65367.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748] Length = 162 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 4/154 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+L++++ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLDVVKAGHPVLKQIAEPVEHVNKKLRALIDDMAETMYETEGVGLAAPQVAVSKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D DHA + INP+I T ++ V EGCLS+P Y DV+R ITV+ +D + + Sbjct: 61 VD--DHAGSG-LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFDKITVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I A+G LA QHE+DHL G LFI+ + L+ Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150 >gi|328676180|gb|AEB27050.1| Peptide deformylase [Francisella cf. novicida Fx1] Length = 172 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 5/168 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 1 MSLEILNYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D+ +NP + + +EGCLS P A V R+ + ++ ++ Sbjct: 61 IM--YDNLEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEF 118 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+ Sbjct: 119 GDEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 166 >gi|229828535|ref|ZP_04454604.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM 14600] gi|229793129|gb|EEP29243.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM 14600] Length = 160 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DPIL++V RP+ K++ LID+MLE MY +G+GLAA Q+GVL R+VV Sbjct: 1 MAIREIRIDGDPILKKVCRPVSKLSDRQQELIDDMLETMYEANGVGLAAPQVGVLRRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V +NP+I + + +EGCLS+P A V R + R +D N + Sbjct: 61 IDVGE-----GPLVMVNPEITEKDGE-QIGEEGCLSVPGKAAIVTRPEHVIARALDRNMK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + GLLA + HELDHL+G ++ + Sbjct: 115 EFSVEGTGLLARAICHELDHLDGHMYTE 142 >gi|260167211|ref|ZP_05754022.1| peptide deformylase [Brucella sp. F5/99] gi|261756615|ref|ZP_06000324.1| peptide deformylase-like protein [Brucella sp. F5/99] gi|261736599|gb|EEY24595.1| peptide deformylase-like protein [Brucella sp. F5/99] Length = 164 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A K ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELDRAAGSK---IYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|87125300|ref|ZP_01081146.1| putative formylmethionine deformylase [Synechococcus sp. RS9917] gi|86167069|gb|EAQ68330.1| putative formylmethionine deformylase [Synechococcus sp. RS9917] Length = 201 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 61/149 (40%), Positives = 92/149 (61%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ ++ I K+++ + +L +ML MY+ GIGLAA Q+GV +L+VIDL Sbjct: 32 EIHTLGDRVLRQPAKRISKVDAAVRDLARDMLRSMYTARGIGLAAPQVGVHKQLLVIDLD 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP+I + S Y+EGCLSIP DV R + I + Y D + + + Sbjct: 92 IENAAAPPLVLINPEITSASASVDTYEEGCLSIPGVYLDVVRPSAIQLSYRDEMGRPRTM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153 ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 152 KADGLMARCIQHEMDHLKGVLFVDRVTDE 180 >gi|226325272|ref|ZP_03800790.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758] gi|225206620|gb|EEG88974.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758] Length = 156 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L +V + + K+ LID+MLE MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRKIREIGDEVLTKVCKEVTKMTPRTTELIDDMLETMYEAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S + +EGCLS+P V R ++ +D + + Sbjct: 61 IDIGE-----GPVVMINPRIVESSGE-QTGEEGCLSVPGKSGIVTRPNYVKAVALDEDMK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I +GL+A + HEL+HL+G L+++ + Sbjct: 115 EYEIEGEGLMARAICHELEHLDGHLYVEKVE 145 >gi|239826564|ref|YP_002949188.1| peptide deformylase [Geobacillus sp. WCH70] gi|239806857|gb|ACS23922.1| peptide deformylase [Geobacillus sp. WCH70] Length = 157 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +P IL + P+++ + ++ L+++M E M DG+GLAA Q+G+ ++ V Sbjct: 1 MAILPIVTYPADILETMCEPVKQFDRQLIQLLNDMYETMIDEDGVGLAAPQVGIAKQIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R INP+II + + EGCLS P +VKR+ ++ VR D + Sbjct: 61 VDVGDKHGRIE---LINPRIIEARGE-QIGPEGCLSFPGLFGEVKRANYVKVRAQDRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A LA LQHE+DHLNGILF + R Sbjct: 117 VFTLEATEFLARALQHEIDHLNGILFTSKVIR 148 >gi|295109186|emb|CBL23139.1| peptide deformylase [Ruminococcus obeum A2-162] Length = 157 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR++SRP++++ I+ LID+ML+ MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRVIRTEEDPVLRKISRPVKEVTPKIVTLIDDMLDTMYEAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P++ INP+I+ S + EGCLS+P V R ++ V+ MD + Sbjct: 61 IDIGE-----GPIILINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAMDEDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I LLA HE+DHL+G ++ D + Sbjct: 115 EVIYEGTELLARAFCHEIDHLDGKMYTDLVE 145 >gi|229493717|ref|ZP_04387501.1| peptide deformylase [Rhodococcus erythropolis SK121] gi|229319386|gb|EEN85223.1| peptide deformylase [Rhodococcus erythropolis SK121] Length = 199 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 8/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L + + P+ + ++I LI +M E M + +G+GLAA Q+GV R+ V Sbjct: 1 MAILPIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVPLRVFV 60 Query: 61 IDLQ--DHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D D + + V +NP + T D EGCLS+P + R+ + V Sbjct: 61 YDCPGDDRSSERRRGVVVNPVLETSEIPQTMPDPDEDFEGCLSVPGEQFPTGRADWAKVT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + G A LQHE HL+G L+ D L + KK+ K Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVLIG-RNARAAKKIIK 170 >gi|188574933|ref|YP_001911862.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519385|gb|ACD57330.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 152 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 69/139 (49%), Positives = 97/139 (69%), Gaps = 3/139 (2%) Query: 29 MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88 L+D+M + MY GIGLAA Q+ V R +VID+ D + P VF+NP+I++ + Sbjct: 14 QALLDDMFQTMYEAPGIGLAASQVDVHKRFMVIDVSD--EKNLPQVFVNPEIVSKQGE-Q 70 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + QEGCLS+P ADV R+ ITVRY+D Q Q ++ADGLLA C+QHE+DHL+G LF+D Sbjct: 71 LCQEGCLSVPGIYADVSRADAITVRYLDRQGQAQELHADGLLAVCIQHEMDHLDGKLFVD 130 Query: 149 HLSRLKRDMITKKMSKLVQ 167 +LS LKR+M+ KK++K + Sbjct: 131 YLSPLKREMVRKKLAKQRK 149 >gi|184200810|ref|YP_001855017.1| peptide deformylase [Kocuria rhizophila DC2201] gi|183581040|dbj|BAG29511.1| peptide deformylase [Kocuria rhizophila DC2201] Length = 249 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 15/179 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR ++ + + + + L+ +M+E MY+ G+GLAA Q+GV ++ Sbjct: 1 MSILRIRTIGDPVLRTPAQEVPQFDESLRTLVRDMVETMYAVGGVGLAAPQVGVGLQIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP++ + + EGCLS+P + R T+ +D + + Sbjct: 61 WGIEGDEG-----HVVNPRL-SVGHEPQDGGEGCLSVPGLSYETPRMDSATLTGVDMHGR 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM---------SKLVQLRD 170 A GLLA C QHE DHL G L++D L R +++ ++ + RD Sbjct: 115 PVHRDATGLLARCFQHETDHLRGTLYVDRLEGEHRRDAMRQLRGEAFRATAERIARERD 173 >gi|78213784|ref|YP_382563.1| peptide deformylase [Synechococcus sp. CC9605] gi|123756848|sp|Q3AHC4|DEF_SYNSC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78198243|gb|ABB36008.1| Formylmethionine deformylase [Synechococcus sp. CC9605] Length = 201 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ +R I K+N + L +ML MY+ GIGLAA Q+G+ +L+VIDL Sbjct: 32 EIHTLGDEVLRQPARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLD 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP+I S Y+EGCLSIP DV R I + + D + + + Sbjct: 92 LENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGL+A C+QHE+DHLNG+LF+D ++ +D + K++ + Sbjct: 152 KADGLMARCIQHEMDHLNGVLFVDRVTD--QDGLQKELKE 189 >gi|54027275|ref|YP_121517.1| peptide deformylase [Nocardia farcinica IFM 10152] gi|54018783|dbj|BAD60153.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152] Length = 196 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 9/173 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI DP+L + + + ++ LI +M E M + +G+GLAA Q+GV RL V Sbjct: 1 MAILPIVIVGDPVLHNPTERVTQTPEELAGLIADMYETMDAANGVGLAANQVGVPLRLFV 60 Query: 61 IDLQDHAHRKNPM----VFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 D D P+ INP +I D +EGCLS+P + R+ + Sbjct: 61 YDCPDAGPDGQPVRRRGAVINPVLETSEIPETMPDPDDDEEGCLSVPGEQFPTGRAEWAR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V +D N I G A LQHE+ HL+G L++D L K + + Sbjct: 121 VTGIDENGGPVDIEGKGFFARMLQHEVGHLDGYLYVDKLVGRHARAAKKTIKR 173 >gi|302540350|ref|ZP_07292692.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302457968|gb|EFL21061.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 185 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 69/145 (47%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +PL + D LR + ++ + L++++ MY+ G+GLAA QIGV R+ V Sbjct: 15 TVRPLRLLGDQALRAPCEEVGDFDAALARLVEDLFATMYAAGGVGLAANQIGVGLRVFVY 74 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D R++ +NP++ EGCLS+P + R V + + Sbjct: 75 DCPDDEDRRHLGHVVNPRLAEADGVTVRGTEGCLSLPGIESGTPRFDRAVVEGVTATGEP 134 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 + G A CLQHE DHL+G LF Sbjct: 135 VRVEGSGFFARCLQHECDHLDGGLF 159 >gi|126463293|ref|YP_001044407.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|126104957|gb|ABN77635.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] Length = 163 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + P E + L +ML MY +G GLAA Q+G + RL V Sbjct: 1 MAILPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ ++ +EGCLSIP R V R+ I +R+ Sbjct: 60 MDTLWKEAPAAPQVFVNPQILWMAEARVEGREGCLSIPGARPLVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q G+ A C QHE+DHL+GI+ +D LS RD ++M Sbjct: 120 EQEALLTGIDAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162 >gi|193215216|ref|YP_001996415.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110] gi|193088693|gb|ACF13968.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110] Length = 202 Score = 184 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +P+L +V++P++ +++++ I++M E MY+ DGIGLAA Q+G RL+V Sbjct: 19 MSILPVYTLGEPVLNKVAKPLKGVDAEMKQFIEDMFETMYNADGIGLAAPQVGKSLRLLV 78 Query: 61 IDLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ + + P+V INP+I+ S +EGCLS+P +V R IT++Y D + Sbjct: 79 VDVSVMEDYQDEKPLVVINPQILETKG-LSTMEEGCLSVPGVHEEVTRPKQITLKYRDAD 137 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++ DG++A LQHE++HL G LFID+L R + +++ + Sbjct: 138 FVERVEIYDGMMARVLQHEIEHLQGNLFIDNLDAKTRRLHREELDAI 184 >gi|325478778|gb|EGC81889.1| peptide deformylase [Anaerococcus prevotii ACS-065-V-Col13] Length = 155 Score = 184 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 3/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR+ S+ + ++ I L+D+M E MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRQEGDPLLRKKSKVVPEVTDRIKVLLDDMAETMYQADGVGLAAPQVGILKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D H + +NP+II + V EGCLSIP++ A VKR + V+Y+D + Sbjct: 61 VD--PHDETTGLVKLVNPEIIEADGE-QVGVEGCLSIPNFNATVKRPEHVKVKYIDEDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 +I A G A L HE+DHL+GILF D Sbjct: 118 EKIWDAHGFPAVILSHEIDHLDGILFRDK 146 >gi|315185956|gb|EFU19720.1| peptide deformylase [Spirochaeta thermophila DSM 6578] Length = 163 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 L D LR+ + + +I+ + +++ M ++M+ +GIGLAA Q+G+ R + + Sbjct: 2 ELRYLGDETLRKRAVLVPEIDGRLARVVEGMFDLMHEANGIGLAAPQVGISQRFFICHVP 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P+VFINP+I S + + ++EGCLSIP ADV R A + V + + + Sbjct: 62 E----GEPLVFINPEITATSPELATFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRM 117 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 ADGLLA +QHE DHLNG+LF+D L KR+ + + Sbjct: 118 EADGLLARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153 >gi|163744870|ref|ZP_02152230.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45] gi|161381688|gb|EDQ06097.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45] Length = 165 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + V++PD LR + PIE + +I L D+M+E M + G+GLAA QIGV+ ++ V Sbjct: 1 MTLRRYVLWPDKRLRSPAEPIEAVTDEIRTLWDDMIETMDAMPGVGLAAPQIGVMLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +++ + NP II S Y+E ++P + A ++R + VR++D Sbjct: 61 VDASEARNKR--IRLANPVIIDASAVLHPYEEASPNLPGFSAVIRRPRGVKVRFLDETGA 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL A +QH++DHL G ++ D+LS+ KRDM+ +K KL Sbjct: 119 EVERDFVGLEAVSVQHQIDHLAGKMYFDNLSKTKRDMLLRKARKL 163 >gi|312143913|ref|YP_003995359.1| peptide deformylase [Halanaerobium sp. 'sapolanicus'] gi|311904564|gb|ADQ15005.1| peptide deformylase [Halanaerobium sp. 'sapolanicus'] Length = 150 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 92/153 (60%), Gaps = 5/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M L DP+LR ++ ++KI + LIDNM E MY+ +G+GLAA Q+G+L R+ V Sbjct: 1 MAVLKLREIGDPVLRSKAKKVDKITPKTIQLIDNMFETMYAEEGVGLAAPQVGILKRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ N +V INP+II + + +EGCLSIP +V RS I V ++ + + Sbjct: 61 IDI----GEGNKIVLINPEIIEENGKM-IMEEGCLSIPGRTGEVIRSKEIKVSSLNRDGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I A+G A +QHE+DHL+G+LFID + L Sbjct: 116 EIEIIAEGFEARAIQHEIDHLDGVLFIDKMVEL 148 >gi|313905223|ref|ZP_07838591.1| peptide deformylase [Eubacterium cellulosolvens 6] gi|313469976|gb|EFR65310.1| peptide deformylase [Eubacterium cellulosolvens 6] Length = 173 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+L +V +P+ K++ + L+ +M + MY G+GLAA Q+GVL R+ V Sbjct: 1 MAIRTIRTEGDPVLEKVCKPVAKMSLRMKILVKDMFDTMYDACGVGLAAPQVGVLRRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++P VF+NP+II S + EGCLSIP V R ++ V+ D N + Sbjct: 61 IDVDG----EHPYVFVNPEIIEMSGE-QTGDEGCLSIPGMTGTVTRPDYVKVKAFDINME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A GLLA HE +HL+G+L+ H+ R Sbjct: 116 PFELEATGLLARACCHEFEHLDGVLYTCHVQGRLR 150 >gi|113474637|ref|YP_720698.1| peptide deformylase [Trichodesmium erythraeum IMS101] gi|110165685|gb|ABG50225.1| peptide deformylase [Trichodesmium erythraeum IMS101] Length = 187 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D LR+ ++ + K++SD+ L+ ML+ MY+ DGIGLAA Q+ V +++VID + Sbjct: 18 EIYYLGDRSLRQSAKRVAKVDSDMRKLVREMLQTMYTADGIGLAAPQVNVQKQVIVIDCE 77 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP I +S+D ++QEGCLSIP DV+R + I V Y D N + Q + Sbjct: 78 PTNSATPPLVLINPTIKKYSNDICLFQEGCLSIPGVYLDVQRPSEIEVAYKDENGRPQTL 137 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A LL+ +QHE+DHL GILF+D + + + ++++K Sbjct: 138 QAQELLSRAIQHEMDHLQGILFVDRVEN--KLALNEELAK 175 >gi|78066802|ref|YP_369571.1| peptide deformylase [Burkholderia sp. 383] gi|77967547|gb|ABB08927.1| Peptide deformylase [Burkholderia sp. 383] Length = 177 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V++P+E+ + ++ ++ +M E M+ +G GLAA QIG+ +L++ Sbjct: 1 MIREILKMGDPRLLEVAKPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGNNNRYPDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + ADG A +QHE DHL G L+ ++ R T+ + Sbjct: 121 DQYGEKIDRVADGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167 >gi|126738020|ref|ZP_01753741.1| peptide deformylase [Roseobacter sp. SK209-2-6] gi|126720517|gb|EBA17222.1| peptide deformylase [Roseobacter sp. SK209-2-6] Length = 168 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 2/150 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +P L + + S + +L+ +M E MY+ G GLAA Q+GV++RL V Sbjct: 1 MALLPILRWPHEGLSKRCEEVAP--STLGSLVADMFETMYAAPGRGLAAPQVGVMHRLFV 58 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +P+V INP+I+ + + EGCLSIP DV+RS + +R+ D Sbjct: 59 MDATWKEGPGSPVVMINPEIMAYDGGTDILAEGCLSIPGITIDVERSKSVNMRWQDQAGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 Q + G A C+QHE DHL G + DHL Sbjct: 119 WQERWFSGFEARCIQHEFDHLEGRVTFDHL 148 >gi|332673404|gb|AEE70221.1| peptide deformylase [Helicobacter pylori 83] Length = 174 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPKEDGVQHKEDCLEIINPKFIET-GGSIMYREGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKILEASELLAVAIQHEMDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|27262480|gb|AAN87521.1| Polypeptide deformylase [Heliobacillus mobilis] Length = 166 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V DP+LR ++ + K N+++ L+D+M + M + G+GLAA QIG+ R+VV Sbjct: 15 MAVYEIVKIGDPVLREKAKTVTKFNANLGRLMDDMYDTMVAAKGVGLAAPQIGISKRVVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + +NP+I+ + EGCLSIPD++ +V RS + V+ + N + Sbjct: 75 IDVGD-----GRIELVNPEILEAEGS-QIDVEGCLSIPDFQEEVNRSQRVKVKAQNRNGE 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +I G LA LQHE+DHL G+LF+D L + Sbjct: 129 EYVIEGTGFLARALQHEIDHLEGVLFVDLLDK 160 >gi|290957509|ref|YP_003488691.1| polypeptide deformylase [Streptomyces scabiei 87.22] gi|260647035|emb|CBG70134.1| putative polypeptide deformylase [Streptomyces scabiei 87.22] Length = 216 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+ + +P+L + + + + ++ L+D+M + +G+GLAA Q+GV ++ V Sbjct: 40 TSLPITVVGNPVLHKECKDVTEFGDELAKLVDDMFASQRTAEGVGLAANQVGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D +++ V NPK++ + EGCLS+P + R + V D Sbjct: 100 DCPDDEGKRHTGVICNPKLVELPAEARRLDDSNEGCLSVPTAYMPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205 >gi|288574972|ref|ZP_06393329.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570713|gb|EFC92270.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 164 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 6/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I+PDP+LR ++ IE+ + + + ++ M +MY DG+GLAA Q+G ++ V Sbjct: 1 MSDRTIRIYPDPVLREPTKEIERFDDNFKSFLEEMESLMYEYDGVGLAAPQVGESLKVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + H V INP+I+ + D V QEGCLS P DV R A + V D N + Sbjct: 61 IAYEGKLH-----VLINPRIVDY-DGRQVDQEGCLSFPGIFEDVARPASVVVEAQDENGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A+G LA + HE+DHLNG L IDHLS +KR+M+ Sbjct: 115 PYSIEAEGFLARAMCHEIDHLNGKLMIDHLSPMKREMV 152 >gi|85700139|gb|ABC74519.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 105/170 (61%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ + + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEPQK 169 >gi|172039521|ref|YP_001806022.1| peptide deformylase [Cyanothece sp. ATCC 51142] gi|171700975|gb|ACB53956.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142] Length = 187 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 58/147 (39%), Positives = 87/147 (59%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + D +LR+ ++ I K++ + L ML+ MYS+ GIGLAA Q+ + +L+VID + Sbjct: 18 DIHVLGDRVLRQPAKRIAKVDDSVRQLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDCE 77 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INPKI S + V +EGCLSIP DV R I V + D + + I Sbjct: 78 PDNPANPPLILINPKITRVSQELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRKI 137 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 A LLA +QHE+DHLNG++F+D + Sbjct: 138 QATDLLARVIQHEMDHLNGVMFVDRVD 164 >gi|254695522|ref|ZP_05157350.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|261215912|ref|ZP_05930193.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str. Tulya] gi|260917519|gb|EEX84380.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str. Tulya] Length = 164 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++INP+I+ ++ +Q G +S+P +V+R A I +RY D + Sbjct: 61 LELDRAAG---PKIYINPEIVWACEEKIRHQVGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|217077056|ref|YP_002334772.1| def peptide deformylase [Thermosipho africanus TCF52B] gi|217036909|gb|ACJ75431.1| def peptide deformylase [Thermosipho africanus TCF52B] Length = 165 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 100/164 (60%), Gaps = 6/164 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + ++ DPILR+ ++ +E I + +++L++MY DG+GLAA Q+G+ R +D Sbjct: 3 IRLYGDPILRKKAKIVEDF-EYIQQIKEDLLKIMYLEDGVGLAAPQVGISLRFFAMD--- 58 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P++ +NP+II S + + +EGCLS+P DV+R ++ +RY D + Q Sbjct: 59 --DGSGPLIIVNPEIIEHSQEKEIGEEGCLSLPGIFEDVERYKWVKLRYQDEYGKVQEKL 116 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G A +QHE DHL+GILFIDHL + ++ ++SK++++R Sbjct: 117 FEGYSARIVQHERDHLDGILFIDHLPTSVKRRLSTELSKIMRMR 160 >gi|284989160|ref|YP_003407714.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] gi|284062405|gb|ADB73343.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] Length = 185 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 6/168 (3%) Query: 2 VKKPLVIFP-DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 V +P+V + +P+L R P+ D+ L+ +M M + DG+GLAA QIGV R+ V Sbjct: 10 VARPIVTYGSNPVLHRPCAPVTAFGKDLRRLVLDMFASMEAADGVGLAANQIGVDARVFV 69 Query: 61 IDLQDHAHRKNPMVFINPKI-----ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID D +NP++ V EGCLS+P A++ R+ V + Sbjct: 70 IDCPDADGEDVVGYVVNPELTVLEPREGEPAEEVTDEGCLSVPGPYAELPRAFRARVDGV 129 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D + I A G+ A CLQHE+DHL+G +++D L R+ + + + Sbjct: 130 DADGAPVSIEATGMAARCLQHEVDHLDGTVYVDRLPGDLRERLLAEAA 177 >gi|78188466|ref|YP_378804.1| peptide deformylase [Chlorobium chlorochromatii CaD3] gi|78170665|gb|ABB27761.1| peptide deformylase [Chlorobium chlorochromatii CaD3] Length = 199 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ +LR+ ++P++ ++ +I LI M E M++ GIGLAA Q+G RL+V+ Sbjct: 12 MILPITIYSHEVLRQKAKPLKGVDKEIETLIAAMFESMHNASGIGLAAPQVGRSLRLLVL 71 Query: 62 DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D+ + K+ PMV INP I++ +EGCLS+P + DV R + IT++Y + Sbjct: 72 DVSCLKNYKDEKPMVVINPHILSVRGA-CAMEEGCLSVPGVQGDVVRPSAITMKYRNERF 130 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + G++A LQHE+DHL+G LF+D + + + I ++++L Sbjct: 131 EELTAEFSGMVARVLQHEIDHLDGKLFVDRMDKRDKRKIQHELNELT 177 >gi|83941566|ref|ZP_00954028.1| peptide deformylase [Sulfitobacter sp. EE-36] gi|83847386|gb|EAP85261.1| peptide deformylase [Sulfitobacter sp. EE-36] Length = 155 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 1/150 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +PD L V P+ +I LI +M E MY+ G GLAA Q+G R+ V Sbjct: 1 MSVLDIVTWPDARLTAVCAPVATRTPEIDQLIADMFETMYAAPGRGLAAPQVGRTERIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P+ INP+I++ SD ++ +EGCLSIP D+ R+ +T+R+ D + Sbjct: 61 FDAGWKEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADG- 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 G A +QHE DHL+GI+ D + Sbjct: 120 THERKFTGAEAVIVQHEYDHLDGIVIYDRV 149 >gi|332298812|ref|YP_004440734.1| Peptide deformylase [Treponema brennaborense DSM 12168] gi|332181915|gb|AEE17603.1| Peptide deformylase [Treponema brennaborense DSM 12168] Length = 187 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 4/164 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ + +LRR S P+ ++ +I L +M ++M G+GLAA Q+GVL RL VI D Sbjct: 3 ILYLGEQLLRRKSEPVNEVTDEIRRLTQDMFQLMDEAQGVGLAAPQVGVLKRLFVITADD 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R VFINP+II S + Y+EGCLSIP + R A +TV+ ++ + + + Sbjct: 63 GVRR----VFINPQIIATSSETCDYEEGCLSIPQIYEHITRPAKVTVQAINEHGKPFTLE 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ADG LA +QHE DHL+GIL+ID R K + R Sbjct: 119 ADGFLARIIQHENDHLDGILYIDRGDPDFRAKTIDSFEKKAERR 162 >gi|325292946|ref|YP_004278810.1| polypeptide deformylase [Agrobacterium sp. H13-3] gi|325060799|gb|ADY64490.1| polypeptide deformylase [Agrobacterium sp. H13-3] Length = 164 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 91/167 (54%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L + P+ + + NL+ ++++ M + G+G+ A IGV R+ V Sbjct: 1 MAIRPILSYPHAGLSEICAPVTVFDDHLQNLVTDLIDTMRAAPGVGITAAHIGVKQRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +INP+I++ S + EG +S+P + +V+R + + VR+ D Sbjct: 61 LELTP----GTVLTYINPEIVSHSAQTMRHVEGSVSMPGFTEEVERPSEVEVRFQDVAGV 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A A C+QHE+D L+G+ ++ LS+LKRD + KK K + Sbjct: 117 EHRESAKAFHAICIQHEIDQLDGVFWLKRLSKLKRDRLVKKWEKSRK 163 >gi|227504404|ref|ZP_03934453.1| peptide deformylase [Corynebacterium striatum ATCC 6940] gi|227199052|gb|EEI79100.1| peptide deformylase [Corynebacterium striatum ATCC 6940] Length = 162 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 1/155 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + DP+L + IEK +S + L ++MLE M + G+GLAA QIG+ R+ V D H Sbjct: 2 YGDPVLTSRATEIEKFDSSLEALANDMLETMDAAGGVGLAANQIGLTKRIFVYDCS-HFQ 60 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 INP D EGCLSIPD + +R + V D + A G Sbjct: 61 TGLRGAIINPVWTPLGDKTQDGPEGCLSIPDITENTERYESVVVHGRDVRGNAISMVASG 120 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 L+A C+QHE DHL+G+LF+ L+ +R + + Sbjct: 121 LMARCIQHETDHLDGVLFLQRLTPERRKEAMQVIR 155 >gi|123965312|ref|YP_001010393.1| peptide deformylase [Prochlorococcus marinus str. MIT 9515] gi|158512726|sp|A2BU25|DEF_PROM5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123199678|gb|ABM71286.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9515] Length = 203 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + +LR ++ I K++ D NL +ML+ MYS GIGLAA Q+G+ L+VID+ Sbjct: 32 EIFKLGNDVLRTNAKRIGKVDLDTRNLAKDMLKSMYSAKGIGLAAPQVGISKELLVIDIN 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INP+I F + + Y+EGCLSIP +V R + I +R+ D + + + Sbjct: 92 FEDSAAEPLILINPEITAFGNTLNSYEEGCLSIPGVYLNVVRPSTIKLRFSDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA C+QHE+DHL G+LF+D ++ ++ + ++ K Sbjct: 152 NADGLLARCIQHEVDHLRGVLFVDRVTS--KEDLKTELKK 189 >gi|62184939|ref|YP_219724.1| peptide deformylase [Chlamydophila abortus S26/3] gi|81312889|sp|Q5L6G8|DEF_CHLAB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62148006|emb|CAH63757.1| peptide deformylase [Chlamydophila abortus S26/3] Length = 184 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + P LRR + I +I +I L +M E M + G+GLAA Q+G L V+ Sbjct: 1 MIRELEYYGSPTLRRKAEAILEITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVSLFVM 60 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ + P V+INP + S+D + +EGCLSIP RADV R ITV+ + Sbjct: 61 CVEGETEDGDLIFCDFPKVYINPVLSNVSEDLVLGREGCLSIPGLRADVYRPRSITVKAI 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167 + + Q + +G A + HE DHLNGIL+ID + K + K+ + Sbjct: 121 NLDGQEFTEHLEGFPARIVMHENDHLNGILYIDKMEEPKDYKKFKSALEKIRR 173 >gi|282890597|ref|ZP_06299120.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499594|gb|EFB41890.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 177 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 66/164 (40%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ---- 64 + +PILR+ + PIE+I+ I L +M+E M++T+GIGLAA QIG L + V + Sbjct: 8 YGNPILRKKAIPIERIDDSIRQLATDMIETMHATNGIGLAANQIGQLLSIFVTCVPIAQD 67 Query: 65 -DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 VFINPKI+ +S +F V+ EGCLSIP +DV R I ++ MD + Sbjct: 68 DGTWIDGKDRVFINPKILAYSQEFQVFSEGCLSIPKLFSDVARPESIKIQAMDLDGNVFE 127 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G AT HE DHLNG+LFID L R +R I + ++ + Sbjct: 128 ETMTGYEATNFMHENDHLNGVLFIDRLHRTERKKIEPILQQIKK 171 >gi|56419706|ref|YP_147024.1| peptide deformylase [Geobacillus kaustophilus HTA426] gi|56379548|dbj|BAD75456.1| polypeptide deformylase [Geobacillus kaustophilus HTA426] Length = 157 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ P+PIL + P+ + + L+D+M E M + DG+GLAA QIGV ++ V Sbjct: 1 MAVLSIVMHPNPILEQPCAPVTIFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R INP +I + V EGCLS P +V R+ F+ VR + + Sbjct: 61 VDVGDEHGRIE---LINPVVIEARGE-QVDVEGCLSFPGLFGEVPRAKFVKVRAQNRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A G LA LQHE+DHL+G+LF + R Sbjct: 117 PFTLSATGFLARALQHEIDHLHGVLFTSKVIR 148 >gi|294631322|ref|ZP_06709882.1| peptide deformylase [Streptomyces sp. e14] gi|292834655|gb|EFF93004.1| peptide deformylase [Streptomyces sp. e14] Length = 216 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 ASRPITVVGNPVLHKECKDVTEFGEELQQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NPK++ D EGCLS+P A + R + V D Sbjct: 100 DCMDDEGVRHVGVVCNPKLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDER 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNAIKVRGTGYFARCLQHETDHLYGQLYIDRLSKRERKDALRQMAE 205 >gi|269797908|ref|YP_003311808.1| peptide deformylase [Veillonella parvula DSM 2008] gi|269094537|gb|ACZ24528.1| peptide deformylase [Veillonella parvula DSM 2008] Length = 162 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 62/154 (40%), Positives = 94/154 (61%), Gaps = 4/154 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+L++V+ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLDVVKAGHPVLKQVAEPVEHVNKKLRVLIDDMAETMYKTEGVGLAAPQVAVAKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D Q + + INP+I T ++ V EGCLS+P Y DV+R +TV+ +D + + Sbjct: 61 VDDQSGSG---LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFNKVTVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I A+G LA QHE+DHL G LFI+ + L+ Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150 >gi|298491536|ref|YP_003721713.1| peptide deformylase ['Nostoc azollae' 0708] gi|298233454|gb|ADI64590.1| peptide deformylase ['Nostoc azollae' 0708] Length = 187 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 2/149 (1%) Query: 5 PLVIF--PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 PL + D +LR+ ++ + KI+ ++ L+ ML+ MYS DGIGLAA Q+G+ +L+VID Sbjct: 16 PLRLHYLGDRVLRQPAKRVTKIDDELRQLVREMLQTMYSEDGIGLAAPQVGINKQLIVID 75 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + +V INP I S + V +EGCLSIP DVKR + + Y D + + Sbjct: 76 CEPDKPEAPALVLINPVIKQVSSELCVAEEGCLSIPKVYLDVKRPQVVEIAYKDEYGRPK 135 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + A LL C+ HE+DHLNG+LF+D + Sbjct: 136 TLKAGDLLGRCILHEMDHLNGVLFVDRVE 164 >gi|210617214|ref|ZP_03291458.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787] gi|210149415|gb|EEA80424.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787] Length = 161 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 86/151 (56%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L +V + + + LI++ML+ MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRKIREIGDDVLEKVCKEVTDMTDRTKVLIEDMLDTMYDAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P++ +NP+I+ + + +EGCLS+P V R ++ V+ ++ + Sbjct: 61 IDIGE-----GPIILVNPEILETAGE-QTGEEGCLSLPGKSGTVTRPNYVKVKALNEEME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA HE+DHL+G L+++ + Sbjct: 115 EVVYEGEGLLARAFCHEIDHLDGHLYVEKVE 145 >gi|113868038|ref|YP_726527.1| peptide deformylase [Ralstonia eutropha H16] gi|113526814|emb|CAJ93159.1| polypeptide or peptide deformylase [Ralstonia eutropha H16] Length = 177 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L +V+RP+E+ N ++ LI++M + M +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP + SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNPRYPDAPTVPKTVLINPVLEMESDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGH 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A+G A +QHE DHL GIL+ + ++ T+ + Sbjct: 121 DLMGNRIERVAEGFHARVVQHECDHLQGILYPMRIKDFRQFGFTEVL 167 >gi|308063423|gb|ADO05310.1| peptide deformylase [Helicobacter pylori Sat464] Length = 175 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P IL+ +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILKTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169 >gi|317125290|ref|YP_004099402.1| peptide deformylase [Intrasporangium calvum DSM 43043] gi|315589378|gb|ADU48675.1| peptide deformylase [Intrasporangium calvum DSM 43043] Length = 215 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI +P+L R + + + + ++ L+ +M E + +G+GLAA QIGV R+ + Sbjct: 1 MAVRPIVISGEPVLHRSAALVTEFDDELRQLVGDMHETNDAANGVGLAAPQIGVGLRVFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + INP + T D EGCLS+P +KR+ V + Sbjct: 61 WKMDNEDGVPARGHIINPTVRTSRIPQERPDPREETEGCLSVPGESFPLKRAERAHVVGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D A G A C+QHE DHLNG L++D L + K + + Sbjct: 121 DLEQNRVEFDATGWFARCMQHEYDHLNGTLYVDRLDDRQAKKARKAVKR 169 >gi|284929247|ref|YP_003421769.1| peptide deformylase [cyanobacterium UCYN-A] gi|284809691|gb|ADB95388.1| peptide deformylase [cyanobacterium UCYN-A] Length = 183 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 99/170 (58%), Gaps = 7/170 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D LR+ ++ + KI+ I L +ML+ MYS++GIGLA+ Q+G+ +L+VID + Sbjct: 14 DIHYLGDKDLRKSAKRVSKIDDSIRELARDMLQTMYSSNGIGLASTQVGIHKQLIVIDCE 73 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INPKI +S + V +EGCLSIP DV R I V + + N + I Sbjct: 74 PELSTNAPLILINPKINYYSQELCVMEEGCLSIPGVYFDVIRPEMIQVSFKNENGRPCQI 133 Query: 125 YADGLLATCLQHELDHLNGILFIDHL-------SRLKRDMITKKMSKLVQ 167 A LLA +QHE+DHLNG++F+D + ++L+ T++ K ++ Sbjct: 134 SATDLLARVIQHEIDHLNGVMFVDRVTNDLDLTTKLQEKGFTRESVKSLK 183 >gi|289449949|ref|YP_003475241.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184496|gb|ADC90921.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 160 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 7/164 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58 M + +++ D LR+ +RP++ I + I ++D+M++ +Y+T +G+GLAAVQ+G+L R+ Sbjct: 1 MAVREIIVDGDDRLRKKARPVDNIADPKIQQIVDDMIDTLYATGNGVGLAAVQVGILKRI 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 VIDLQD K V+INP+II QEGCLS+P + +V R A +TVR D N Sbjct: 61 FVIDLQDGKGLK---VYINPEIIDRQGS-QCNQEGCLSLPGFWGEVIRPAKVTVRAFDRN 116 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDH-LSRLKRDMITKK 161 + A GL A C+ HE DHLNGILF D +S + +K Sbjct: 117 GKQFEQTATGLGAICISHETDHLNGILFKDLVISEEEAARFKQK 160 >gi|29829575|ref|NP_824209.1| polypeptide deformylase [Streptomyces avermitilis MA-4680] gi|39931079|sp|Q82IV0|DEF1_STRAW RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|29606683|dbj|BAC70744.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680] Length = 216 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + +++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTDFGAELEQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D QD ++ V NPK++ D EGCLS+P A + R + V D Sbjct: 100 DCQDDEGTRHVGVVCNPKLVDLPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|158421732|ref|YP_001523024.1| peptide deformylase [Azorhizobium caulinodans ORS 571] gi|158328621|dbj|BAF86106.1| polypeptide deformylase [Azorhizobium caulinodans ORS 571] Length = 165 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 97/167 (58%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M LV FPDP LR+ + P+ + + + ++L+ M + GIG+ G++ RLV Sbjct: 1 MAVLDLVRFPDPRLRQPAEPVTVFDGALADRAQDLLDTMRAAPGIGITGPHAGLMIRLVA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + A P ++NP+++ S + + EG +S+P +V+R A + V + + Sbjct: 61 LELPETA----PAFYVNPRVLRASPEMGRHPEGSVSMPGVVEEVERPARVRVAFQGLDGT 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLL+ CLQHE+D L+GI +I LSRLKR+ + KK KL++ Sbjct: 117 GHEVEADGLLSVCLQHEIDQLDGIFWIQRLSRLKRERVVKKYEKLLK 163 >gi|242309635|ref|ZP_04808790.1| peptide deformylase [Helicobacter pullorum MIT 98-5489] gi|239523636|gb|EEQ63502.1| peptide deformylase [Helicobacter pullorum MIT 98-5489] Length = 169 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 107/169 (63%), Gaps = 4/169 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+P+LR++S+PIE + + L+D M E M + +G+G++A+Q+ R ++I Sbjct: 1 MMLEVITYPNPLLRQISKPIENFDESLHQLLDAMYETMLNKNGVGISAIQVAKPIRALLI 60 Query: 62 DLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 L D H++N + INP+II + + ++ EGCLS+P++ +VKR + + + Y + Sbjct: 61 CLPDEEGNQHKENLLEIINPEIIEKNGEI-LFNEGCLSVPEFYEEVKRYSSLKIHYQNRY 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ + A+ LA LQHE+DHLNGILFID LS +KR K++ + + Sbjct: 120 GENLQLEANDYLAVALQHEIDHLNGILFIDKLSIIKRKKFEKELKQKRK 168 >gi|109947463|ref|YP_664691.1| peptide deformylase [Helicobacter acinonychis str. Sheeba] gi|122973308|sp|Q17XD4|DEF_HELAH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|109714684|emb|CAJ99692.1| polypeptide deformylase [Helicobacter acinonychis str. Sheeba] Length = 175 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 105/170 (61%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKFHQQLDDMHETMIASEGIGLAAIQVGLPLRMLL 60 Query: 61 IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +++EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGSI-MFKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAKVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169 >gi|311104085|ref|YP_003976938.1| peptide deformylase 1 [Achromobacter xylosoxidans A8] gi|310758774|gb|ADP14223.1| peptide deformylase 1 [Achromobacter xylosoxidans A8] Length = 177 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV+ P+E+ + ++ LID+M E M + G+GLAA QIGV +LV+ Sbjct: 1 MIHTILKMGDPRLLRVAAPVERFDTPELHALIDDMFETMAAAQGVGLAAPQIGVDLQLVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + + NP I SD+ EGCLS+P R V R I Sbjct: 61 FGFDRNERYPDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGLVPRYRRIRYSGR 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D Q ADG A +QHE DHL G L+ + + T+ Sbjct: 121 DPYGQLIEREADGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165 >gi|291536618|emb|CBL09730.1| peptide deformylase [Roseburia intestinalis M50/1] Length = 158 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+L + R I ++ I LID+ML+ MY +G+GLA Q+GVL R+VV Sbjct: 1 MALRTIRIQGDPVLTKKCREINEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP I+ S + EGCLS+P V R ++ R D N + Sbjct: 61 IDIGE-----GPVVMINPVILEKSGE-QTGDEGCLSLPGKAGTVTRPNYVKARAFDENME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I L+A + HELDHL+G ++ + Sbjct: 115 EYEIEGTELMARAICHELDHLDGHMYTE 142 >gi|146276207|ref|YP_001166366.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] gi|145554448|gb|ABP69061.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] Length = 167 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++PD L+ + P++ + +I + D+M+E M + G GLA QIGV+ RL V+ Sbjct: 1 MIRPFVMYPDKRLKTAAAPVDAVTDEIHAIWDDMVETMDAMPGYGLAGPQIGVMLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D + + NP+I+ S F ++EG ++P A + R +TVR+++ + Sbjct: 61 DCSDSRGKA--IRLANPEILHASGQFREHEEGSPNLPGATAVISRPRAVTVRFLNTAGEM 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + AT +QH++DHLNG L+IDHLS LKR M+ K K ++ Sbjct: 119 EERDFVDIWATSVQHQIDHLNGKLYIDHLSALKRKMVIAKSEKYLR 164 >gi|307719714|ref|YP_003875246.1| peptide deformylase [Spirochaeta thermophila DSM 6192] gi|306533439|gb|ADN02973.1| peptide deformylase [Spirochaeta thermophila DSM 6192] Length = 163 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 4/156 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 L D ILR+ + + +I+ + +++ M ++M+ +GIGLAA Q+G+ R + + Sbjct: 2 ELRYLGDEILRKRAVLVPEIDGRVARVVEGMFDLMHEANGIGLAAPQVGISQRFFICHVP 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P+VFINP+I S + + ++EGCLSIP ADV R A + V + + + Sbjct: 62 E----GEPLVFINPEITATSPELTTFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRM 117 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 ADG+LA +QHE DHLNG+LF+D L KR+ + + Sbjct: 118 EADGMLARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153 >gi|218188726|gb|EEC71153.1| hypothetical protein OsI_02992 [Oryza sativa Indica Group] Length = 997 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 85/162 (52%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 797 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 856 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP + S VY+E CLS P A+V R + + D + Sbjct: 857 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 916 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 GL A QHE DHL GILF D +S + + + + L + Sbjct: 917 LSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEK 958 >gi|111219523|ref|YP_710317.1| peptide deformylase 3 (PDF 3) (polypeptide deformylase 3) [Frankia alni ACN14a] gi|111147055|emb|CAJ58702.1| Peptide deformylase 3 (PDF 3) (Polypeptide deformylase 3) [Frankia alni ACN14a] Length = 224 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 4/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + +P+L R R I + ++ LID+M MY +G+GLAA QI V L V Sbjct: 40 TIRRITVVGEPVLHRPCRKITEFGTPELAALIDDMFATMYGAEGVGLAANQIDVDAALFV 99 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D D ++ NP++ +EGCLS+P +V R VR D Sbjct: 100 YDCTDEDGVRHVGHLANPELEESDPAERRLVKGEEGCLSVPGAYMEVARLERAAVRGQDA 159 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A CLQHE DHL G L++D LS R K+M + + Sbjct: 160 TGAPLRLEGTGYFARCLQHETDHLYGGLYLDRLSSRGRKKALKEMEERAEE 210 >gi|222618926|gb|EEE55058.1| hypothetical protein OsJ_02762 [Oryza sativa Japonica Group] Length = 267 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 86/162 (53%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 80 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 139 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP + S VY+EGCLS P A+V R + + D + Sbjct: 140 VKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 199 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 GL A QHE DHL GILF D +S + + + + L + Sbjct: 200 LSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEK 241 >gi|237755423|ref|ZP_04584049.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692423|gb|EEP61405.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] Length = 177 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 8/172 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 + I+PDPIL+ ++ ++ + + I+ M E MY +G+GLAA QIG+ Y+++VID Sbjct: 5 IRIWPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTSL 64 Query: 64 -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ MV INPKI+ + EGCLS P + + R+ + V + Sbjct: 65 RENRSEEETEPPVKMVLINPKIVEKEGEVQST-EGCLSFPGVQITIPRAKRVKVVGKNEK 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + I + LA LQHE+DHLNGI FI++LS LKR ++ K K ++ + Sbjct: 124 GEDVEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLKSLKELE 175 >gi|291300069|ref|YP_003511347.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] gi|290569289|gb|ADD42254.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] Length = 183 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +F DP+LR + ++ + + L+ N+ + M G GLAA Q+GV R+ Sbjct: 1 MSIVPIRLFGDPVLRTPADEVKTFDKEFRKLVRNLTDTMLDEGGAGLAAPQLGVGLRVFA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D NP + ++ EGCLSIP D R + + + Sbjct: 61 FDVDDVIG-----HLANPVLEFPDEEEQDGPEGCLSIPGLYFDTVRRQNVIAKGYNEYGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I GL+A CLQHE DHL+GILF+D L +R K++ D Sbjct: 116 PMQIVGTGLMARCLQHETDHLDGILFLDRLDPERRKAAMKEIRSAEWYND 165 >gi|307298449|ref|ZP_07578252.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915614|gb|EFN45998.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2] Length = 163 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 5/163 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PILR VS +E + ++ ++ + + MY DG+GLAA Q+ + RL V D D Sbjct: 3 VIYIGNPILRDVSEKVEVFDDELRQFVNELSKTMYVEDGVGLAAPQVAISRRLFVYDPGD 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 V +NP+I+ SD+ +EGCLSIP ADV R A + +RY D + Sbjct: 63 -----GLRVVVNPEILFRSDEKVKIEEGCLSIPGIYADVVRPASVRIRYQDEYGHYHEDD 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A +QHE DHL+GILF+D+LS KR ++ K+ ++++ Sbjct: 118 LTDYPARIVQHETDHLDGILFVDYLSSAKRAILKPKLDQIIKE 160 >gi|254796760|ref|YP_003081596.1| peptide deformylase [Neorickettsia risticii str. Illinois] gi|254590005|gb|ACT69367.1| peptide deformylase [Neorickettsia risticii str. Illinois] Length = 205 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 13/170 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M LVI PDPIL +VS + ++ + +D+MLE MY GIGLAAVQ+GVL R++V Sbjct: 21 MALLKLVIEPDPILHKVSGNVVGVSDEKREFLDDMLETMYHYTGIGLAAVQVGVLERIIV 80 Query: 61 IDLQDHAH-------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 +D+ P +NP+II FS + EGCLS+P+ ++ R Sbjct: 81 VDVPPDKEWHSSPLNHVGYESSGGPYYLVNPEIIEFSRNLVSADEGCLSLPEQNYEIVRP 140 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + V+Y++ N + ++ A+G LA C+QHE+DHL+G L++ HLS+LK D+ Sbjct: 141 DAVVVKYLNYNGEECLLKANGWLARCIQHEVDHLDGKLYVSHLSKLKYDL 190 >gi|300934519|ref|ZP_07149775.1| peptide deformylase [Corynebacterium resistens DSM 45100] Length = 163 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 7 VIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 F DP+LR V+ PI S + L+ +MLE M G+GLAA Q+GV R+ V D Sbjct: 2 RYFGDPVLRTVADPIAPAQVGESSVRTLVADMLETMDHYGGVGLAANQVGVTKRVFVYDC 61 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 INP+ D+ EGCLS+P V R+ + V + + + Sbjct: 62 DGDRG-----HIINPEWQRIGDEEQTGPEGCLSVPGIGGTVTRAMRVRVTGLTVDGEPID 116 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHE DHLNGI+F+ HLS +R K++ + Sbjct: 117 REVTELLARCVQHETDHLNGIMFLKHLSSEERKEAMKEIRQAEW 160 >gi|302536804|ref|ZP_07289146.1| peptide deformylase [Streptomyces sp. C] gi|302445699|gb|EFL17515.1| peptide deformylase [Streptomyces sp. C] Length = 211 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L R + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 35 TSRPITVVGNPVLHRECKDVTEFGDELARLIDDMFASQKTAEGVGLAANQIGVDAKVFVY 94 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V +NPK++ EGCLS+P A + R + V D Sbjct: 95 DCPDDDGVRHTGVVVNPKLVELPAANRVLDDSNEGCLSVPTAYASLARPDYAEVTGQDAQ 154 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 155 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 200 >gi|167626939|ref|YP_001677439.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596940|gb|ABZ86938.1| Peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 172 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 96/169 (56%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P PIL+ +++ + E+I+ D I M E+M +G+GLAA+Q+G+ R Sbjct: 1 MSLEILKYPHPILKEIAKEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + + INPKII S + +EGCLS P A + R+ + ++ ++ Sbjct: 61 IMYDNLESETPKIITIINPKIIDQSG-KIIDEEGCLSFPGVSAKINRATRVKIKALNEFG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + D LA C+QHE+DHLNG+ F DHL LKR MI KK KL+Q Sbjct: 120 QEIEVEKDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQE 168 >gi|313888509|ref|ZP_07822176.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845538|gb|EFR32932.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 163 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 85/153 (55%), Gaps = 5/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR+ S+ + N + LID+M E M G+GLAA QIG+L R++V Sbjct: 1 MAIRKIRTDGDPILRKKSKVVTNYNDRLKLLIDDMYETMDLAPGVGLAAPQIGILKRVIV 60 Query: 61 ID----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +D D + INP+II + EGCLS+P + VKR+ I V+Y D Sbjct: 61 VDNREEDNDEGEKPMRFYMINPEIIEKDGEEVSM-EGCLSVPGKQGTVKRAKHIKVKYND 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 Q +++ A+ LA +QHE DHL+GIL+ D Sbjct: 120 LEGQEKLMEAEDFLARIIQHETDHLDGILYTDK 152 >gi|332670777|ref|YP_004453785.1| peptide deformylase [Cellulomonas fimi ATCC 484] gi|332339815|gb|AEE46398.1| peptide deformylase [Cellulomonas fimi ATCC 484] Length = 166 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR PI I+ + +L+D++LE + GLAA QIGV R Sbjct: 5 MAMREIRTVGDPVLRTPCDPITTIDDRVRSLVDDLLETVDHEGRAGLAANQIGVGLRAFS 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ D +NP I+ S D++ EGCLS+P +R+ + V D + Sbjct: 65 WNIDDEIGY-----VLNPVIVELSEDEYQDGDEGCLSVPGLWYPTRRAWYARVAGTDLDG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ++ L+A CLQHE+DHL+G+L++D L R R + + + Sbjct: 120 KEVVVEGTELMARCLQHEVDHLDGMLYLDRLERSVRKKAMRAIRE 164 >gi|188997413|ref|YP_001931664.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932480|gb|ACD67110.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] Length = 177 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 8/172 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 + +PDPIL+ ++ ++ + + I+ M E MY +G+GLAA QIG+ Y+++VID Sbjct: 5 IRTWPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTSL 64 Query: 64 -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ A MV INPKI+ + EGCLS P + + R+ + V + Sbjct: 65 REKRSEEEAEPPVKMVLINPKIVEKEGEVQST-EGCLSFPGVQITIPRAKRVKVVGKNEK 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + I + LA LQHE+DHLNGI FI++LS LKR ++ K K ++ + Sbjct: 124 GEDVEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLKSLKELE 175 >gi|269794722|ref|YP_003314177.1| peptide deformylase [Sanguibacter keddieii DSM 10542] gi|269096907|gb|ACZ21343.1| peptide deformylase [Sanguibacter keddieii DSM 10542] Length = 162 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I I+ + L++++L+ + GLAA QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEITVIDDRVRGLVEDLLDTVNDDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ D +NPKI+ S D++ EGCLS+P+ +R+ + V D + Sbjct: 61 WNIDDEIGY-----VLNPKIVELSEDEYQDGDEGCLSVPNLWYPTERAWYARVEGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ L+A CLQHE+DHL+G L++D L + R + + + Sbjct: 116 NKVVVEGTELMARCLQHEVDHLDGYLYLDRLDKAVRKKAMRALRE 160 >gi|163855075|ref|YP_001629373.1| peptide deformylase [Bordetella petrii DSM 12804] gi|163258803|emb|CAP41102.1| peptide deformylase [Bordetella petrii] Length = 177 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV++P+ + + ++ L+ +M E M G+GLAA QIGV +LV+ Sbjct: 1 MIHAILKMGDPRLLRVAQPVGQFDTPELHELVADMFETMVHAKGVGLAAPQIGVDLQLVI 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V NP I SD+ EGCLS+P R V R I R Sbjct: 61 FGFEHNERYPDAPPVPLTVLCNPVITPRSDEREDGWEGCLSVPGLRGLVPRYRHIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + Q A+G A +QHE DHL G L+ + + T+ + Sbjct: 121 DPHGQPIEREAEGFHARVVQHECDHLIGRLYPSRIEDFSKFGFTEVL 167 >gi|330817443|ref|YP_004361148.1| Peptide deformylase [Burkholderia gladioli BSR3] gi|327369836|gb|AEA61192.1| Peptide deformylase [Burkholderia gladioli BSR3] Length = 177 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V++P+E + ++ L+ +M E M+ +G GLAA QIGV +L++ Sbjct: 1 MIREILRMGDPRLLEVAKPVEAFDTPELHELVADMFETMHHANGAGLAAPQIGVGLQLII 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++A + V INP + D EGCLS+P R V R + + Sbjct: 61 FGFGNNARYPDAPPVPETVLINPSVEYLPPDMEEGWEGCLSVPGMRGVVSRYSKVHYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A+G A +QHE DHL G L+ ++ + + + Sbjct: 121 DQYGKRIDRIAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGFAEVL 167 >gi|268589951|ref|ZP_06124172.1| peptide deformylase [Providencia rettgeri DSM 1131] gi|291314667|gb|EFE55120.1| peptide deformylase [Providencia rettgeri DSM 1131] Length = 169 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + ++ PD LR P+ + + LID++L+ MYST +GIGLAA QI ++ Sbjct: 1 MAVREIIEIPDERLRIKCSPVTDF-AAVQTLIDDLLDTMYSTDNGIGLAATQIAETKSIM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + +R PMVF+NP+I+ S+ + YQEGCLS+P+ ADV R + V+ D + Sbjct: 60 VIDISE--NRDEPMVFVNPEIVE-SEGETSYQEGCLSVPEIYADVDRFLRVKVKAYDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + + +D LA +QHE+DHL+G +F+DHLS LKR+M Sbjct: 117 KAFEVDSDEFLAIVMQHEIDHLHGKVFLDHLSPLKRNM 154 >gi|163842029|ref|YP_001626434.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] gi|162955505|gb|ABY25020.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] Length = 190 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 9/174 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI +P+L R + ++ + + L+ +M E +G GLAA QIG+ R+ V Sbjct: 1 MSVHPIVIKGEPVLHRRATEVKDFDDALRTLVVDMHETNAVANGAGLAAPQIGIGLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKII--TFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +++ V +NP ++ S D EGCLS+P +KR+ ++ V Sbjct: 61 YAMENDDDVPAKGVLVNPTLVLGKVSGTAPDPDEESEGCLSVPGEHFPLKRAEWVRVSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D A G A C+QHE DHL+G L++D L D +K ++ + + Sbjct: 121 DEFGNPVQFEATGWFARCMQHEYDHLDGKLYVDRLV----DRYQRKARRIAKDK 170 >gi|319763298|ref|YP_004127235.1| peptide deformylase [Alicycliphilus denitrificans BC] gi|330825493|ref|YP_004388796.1| peptide deformylase [Alicycliphilus denitrificans K601] gi|317117859|gb|ADV00348.1| peptide deformylase [Alicycliphilus denitrificans BC] gi|329310865|gb|AEB85280.1| peptide deformylase [Alicycliphilus denitrificans K601] Length = 179 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ ++ DP L RV+RP+ + + ++ L+ ++L+ M++ +G GLAA QIGV ++V Sbjct: 1 MTQRTILKMGDPRLLRVARPVTRFDTDELHGLLADLLDTMHAANGAGLAAPQIGVDLQVV 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V A V INP + D+ S+ EGCLS+P R V R + Sbjct: 61 VFGSGAPNPRYPDAPVVPRTVLINPVVTPIGDEESLDWEGCLSVPGMRGMVPRWQTVRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + G A +QHE DHL G L+ + + T+ + Sbjct: 121 GFDVRGEPIDRTVSGFHARVVQHECDHLWGKLYPMRMRDFSQFGFTEVL 169 >gi|158337779|ref|YP_001518955.1| peptide deformylase [Acaryochloris marina MBIC11017] gi|158308020|gb|ABW29637.1| peptide deformylase [Acaryochloris marina MBIC11017] Length = 189 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 62/146 (42%), Positives = 90/146 (61%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ ++ + K++ +I L ML+ MYS DGIGLAA Q+ V +L+V+D Sbjct: 19 IHTLGDRVLRQSAKRVSKVDDEIRELARQMLQTMYSADGIGLAAPQVAVGKQLIVVDTDP 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P++ +NPKI SDD ++ QEGCLSIP DV+R A I V Y D + Q+I Sbjct: 79 EEPANQPIILLNPKIRRHSDDLALGQEGCLSIPGVYLDVRRPAQIEVAYKDEQGRPQVIV 138 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 A LLA +QHE+DHL G++F+D + Sbjct: 139 ATDLLARVIQHEMDHLTGVMFVDRVE 164 >gi|260588060|ref|ZP_05853973.1| peptide deformylase [Blautia hansenii DSM 20583] gi|331082371|ref|ZP_08331497.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|260541587|gb|EEX22156.1| peptide deformylase [Blautia hansenii DSM 20583] gi|330400857|gb|EGG80458.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 159 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 85/151 (56%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D IL + R +EK+ I LID+M + MY G+GLAA Q+G+L ++VV Sbjct: 1 MALRQIRTQGDDILTKECRKVEKMTPKIRELIDDMFDTMYEAYGVGLAAPQVGILKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID ++P+V INP+II S +EGCLS+P V R ++ VR D + Q Sbjct: 61 IDTTG----EDPIVLINPEIIETSGS-QTGEEGCLSVPGMSGVVTRPNYVKVRAFDEDMQ 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I+ + LLA + HE DHL+G L+ + + Sbjct: 116 EFILEGEELLARAICHETDHLHGRLYTELVE 146 >gi|34580422|ref|ZP_00141902.1| polypeptide deformylase [Rickettsia sibirica 246] gi|229586763|ref|YP_002845264.1| Polypeptide deformylase [Rickettsia africae ESF-5] gi|28261807|gb|EAA25311.1| polypeptide deformylase [Rickettsia sibirica 246] gi|228021813|gb|ACP53521.1| Polypeptide deformylase [Rickettsia africae ESF-5] Length = 183 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 N-NKSSPIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG F+D+LS+LKRD + KKM K ++L Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKKMLKHIKL 171 >gi|326511653|dbj|BAJ91971.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 270 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 90/162 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDP+LR ++ I ++++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 81 VVQYPDPVLRARNKRINTFDNNLRSLADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 140 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP + FS SVY+EGCLS P A+V R + + D + + Sbjct: 141 VKGEGEEIVLVNPVVYKFSKRLSVYEEGCLSFPGIYANVLRPDTVKIDAQDASGAKIKVK 200 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A QHE DHL GILF D ++ + I +++ L + Sbjct: 201 LSELSARVFQHEFDHLQGILFFDRMTMDVVESIHEQLKSLEE 242 >gi|229826165|ref|ZP_04452234.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC 49176] gi|229789035|gb|EEP25149.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC 49176] Length = 175 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 3/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +R I++ + I LID+MLE MY DG+GLAA Q+GVL RL V Sbjct: 1 MALRNIRIVGDEILNKRAREIKENSDKIQTLIDDMLETMYDADGVGLAAPQVGVLKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R P VFINP+I+ S + EGCLS+P V R ++ ++ ++ + Sbjct: 61 IDCSE--DRNEPFVFINPEILETSGE-QTGSEGCLSVPGKAGIVTRPEYVKMKALNREFE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 II +GL A + HE +HL+G ++ + + Sbjct: 118 EYIIEGEGLFARAMVHENEHLDGHIYTEKV 147 >gi|300775194|ref|ZP_07085056.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] gi|300505934|gb|EFK37070.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] Length = 190 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 70/161 (43%), Positives = 90/161 (55%), Gaps = 11/161 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ F DP+LR+V + I+K + LIDNM E MYS +GIGLAA QIG+ RL VI Sbjct: 1 MILPIRAFGDPVLRKVGKDIDKDYPGLQELIDNMFETMYSANGIGLAAPQIGLDIRLFVI 60 Query: 62 DLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D+ A ++ VFIN +I+ S + + EGCLSIPD R DVKR I Sbjct: 61 DVTPLAEDEDYEDIKDELAEFKKVFINAQILEESGEEWKFNEGCLSIPDVREDVKRKGTI 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Y D N + A +QHE DH+ GILF DHLS Sbjct: 121 VIEYYDENFVKHTETFSDIRARVIQHEYDHIEGILFTDHLS 161 >gi|300741742|ref|ZP_07071763.1| peptide deformylase [Rothia dentocariosa M567] gi|300380927|gb|EFJ77489.1| peptide deformylase [Rothia dentocariosa M567] Length = 190 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR PI + ++ LID+ML+ MY +G+GLA QIG+ ++ Sbjct: 1 MTILSIRTVGDPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP + + EGCLS+P ++D R + VR +D + Sbjct: 61 FGGIDDRE----GYIINPVL-ETGTEPQEGGEGCLSVPGMKSDTPRMNWARVRGVDKMGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ +GL A LQHE DHL+G LFID L R + + + Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRKRVMRTIRA 159 >gi|188585959|ref|YP_001917504.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF] gi|229487487|sp|B2A2K1|DEF_NATTJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|179350646|gb|ACB84916.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 156 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 93/156 (59%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + DP+L+R ++ + I+ + L+ NML+ MY +GIGLAA QIG+ R++V Sbjct: 1 MAIKKIRTNDDPVLKRKAKKVTNIDDRLERLLTNMLDTMYEAEGIGLAAPQIGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INP+I+ SD+ EGCLS P + V R +TV+ ++ + Sbjct: 61 VDIGEDEIYQ----LINPEIVDTSDEQEKALEGCLSYPGLQGRVTRPVKVTVKALNPQEE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 II A+GLLA LQHE+DHL+GI FID + R+ Sbjct: 117 EMIIEAEGLLARALQHEIDHLDGITFIDRAEEVFRE 152 >gi|298247409|ref|ZP_06971214.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] gi|297550068|gb|EFH83934.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] Length = 172 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 3/153 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ DPILR+ ++ I + ++ + L+ +M E M++ DG GLAA QIG+ RL V Sbjct: 1 MSLRNIVMLGDPILRQKAKRIHRFDASLRKLVKDMFETMHANDGAGLAAPQIGLSLRLFV 60 Query: 61 IDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDCN 118 ++L+D K+ + NP+II + +GCLSIP Y +V+R+ + V+ D N Sbjct: 61 VELEDPETEKHYKVAMANPEIIKTEGE-QTGLDGCLSIPGYYGVNVRRANKVIVKGQDLN 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + A+G A LQHE+DHLNG+LFID L Sbjct: 120 GKPMKVMAEGYYAWALQHEIDHLNGVLFIDLLD 152 >gi|182677516|ref|YP_001831662.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633399|gb|ACB94173.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] Length = 165 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 100/169 (59%), Gaps = 4/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FPDP L ++ +E + + L D+++E +++ GIG+ A IGV RLV Sbjct: 1 MAVRPVIRFPDPRLSMAAQKVEHFDETLRTLADDLVESLHAAHGIGITAPHIGVPARLVA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + R +++NP+II SD +QEG +S+P V+R A I VRY D + Sbjct: 61 LELTPNQTR----LYVNPEIIWSSDTKIRHQEGSVSMPGVTEIVERCAEIHVRYQDLDGS 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ADG LA C QHE+D L+G+ +I LSRLKR+ + K+ KL R Sbjct: 117 VHIEKADGFLAICHQHEIDQLDGLFWIQRLSRLKRERVIKRYEKLASDR 165 >gi|282889627|ref|ZP_06298167.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500454|gb|EFB42733.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 178 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 100/172 (58%), Gaps = 6/172 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ PL + DPILR+ +E+I+S + L+++M+E + + GIGLAA Q+ L + Sbjct: 1 MQLPLAFYGDPILRKKCARVEQIDSQLKQLVNDMVETLEAHRGIGLAAPQVHHELNLFIT 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + N VF+NPKI+ +S++ + Y EGCLSIP+ A V+R ITV+Y D Sbjct: 61 KVPIRYKNGKEDSGNLHVFVNPKILAYSEEKNRYTEGCLSIPNVYAPVERPLSITVQYTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSKLVQ 167 + + + GL A C+ HE DH+NG+LFID + + +R + + ++ + Sbjct: 121 LDGKTCVEDFSGLEARCILHENDHINGVLFIDRIKKGNERKQLDPLLKQIKK 172 >gi|61679585|pdb|1Y6H|A Chain A, Crystal Structure Of Lipdf gi|61679586|pdb|1Y6H|B Chain B, Crystal Structure Of Lipdf gi|75765202|pdb|1SV2|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.5 gi|75765203|pdb|1SV2|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.5 gi|75765298|pdb|1VEV|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph6.5 gi|75765299|pdb|1VEV|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph6.5 gi|75765300|pdb|1VEY|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.0 gi|75765301|pdb|1VEY|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.0 gi|75765302|pdb|1VEZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans(Lipdf) At Ph8.0 gi|75765303|pdb|1VEZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans(Lipdf) At Ph8.0 Length = 177 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 8/160 (5%) Query: 3 KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ DPILR++S P+ + + LI +M + M +G+GLAA QIG+L ++V Sbjct: 2 VRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIV 61 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 V+ +D+ + +NP I + D S + EGCLS+P R V+R I +++ Sbjct: 62 VVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQW 121 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 MD DG A QHE DHL GIL++D L K Sbjct: 122 MDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161 >gi|149922552|ref|ZP_01910982.1| peptide deformylase [Plesiocystis pacifica SIR-1] gi|149816579|gb|EDM76074.1| peptide deformylase [Plesiocystis pacifica SIR-1] Length = 177 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +PDP LR + + +N +I +L+ +M + MY+ + G+AA+Q+G L R+ + Sbjct: 1 MAVLEIVKYPDPRLREDTFDVADVNDEIRSLVRDMTDTMYALNAAGIAAIQVGRLERIFL 60 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID + +P+VFINP+++ V +EGCLS PD DVKR + VR +D N Sbjct: 61 IDGKVAGGDENSDPLVFINPEVVETGKGQVVAEEGCLSFPDVFVDVKRPRWAKVRALDVN 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + D L LQHE DHL G L ID + +K++MI +KM + Sbjct: 121 GESFEVDGDELFGRALQHEHDHLTGKLMIDLVGMVKKEMIKRKMKRW 167 >gi|168182587|ref|ZP_02617251.1| peptide deformylase [Clostridium botulinum Bf] gi|237795949|ref|YP_002863501.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|182674255|gb|EDT86216.1| peptide deformylase [Clostridium botulinum Bf] gi|229263426|gb|ACQ54459.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 147 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 94/150 (62%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR IEKI+ I+ L+++M+E MYS +G+GLAA Q+G+L R VV Sbjct: 1 MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II + EGCLS+P + +V+R + V+ ++ + Sbjct: 61 IDVGE-----GLIKLINPEIIETEGN-QKDVEGCLSVPGEQGEVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ +GLLA HE+DHL+G+LF+D + Sbjct: 115 EIVLEGEGLLARAFCHEIDHLDGVLFVDKV 144 >gi|115438779|ref|NP_001043669.1| Os01g0637600 [Oryza sativa Japonica Group] gi|75251983|sp|Q5VNN5|DEF1B_ORYSJ RecName: Full=Peptide deformylase 1B, chloroplastic; Short=OsPDF1B; Short=PDF 1B; Flags: Precursor gi|55297005|dbj|BAD68576.1| putative polygalacturonase [Oryza sativa Japonica Group] gi|55297594|dbj|BAD68940.1| putative polygalacturonase [Oryza sativa Japonica Group] gi|113533200|dbj|BAF05583.1| Os01g0637600 [Oryza sativa Japonica Group] gi|164633054|gb|ABY64740.1| peptide deformylase 1B1 [Oryza sativa Japonica Group] gi|215741408|dbj|BAG97903.1| unnamed protein product [Oryza sativa Japonica Group] Length = 269 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 86/162 (53%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 80 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 139 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP + S VY+EGCLS P A+V R + + D + Sbjct: 140 VKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 199 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 GL A QHE DHL GILF D +S + + + + L + Sbjct: 200 LSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEK 241 >gi|260437318|ref|ZP_05791134.1| peptide deformylase [Butyrivibrio crossotus DSM 2876] gi|292810230|gb|EFF69435.1| peptide deformylase [Butyrivibrio crossotus DSM 2876] Length = 168 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DPILR+V +P+++I L+ +ML+ MY +G+GLAA Q+G+L R+VV Sbjct: 11 MALRNIRINDDPILRKVCKPVQEITKKTEELVGDMLDTMYEANGVGLAAPQVGILKRIVV 70 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D P++ INP+I+ S QEGCLSIP V R ++ + D Sbjct: 71 IDIGD-----GPIIMINPEILETSGS-QTGQEGCLSIPGKAGIVTRPNYVKAKAYDLQMN 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I + LLA + HEL HL+G L+IDH+ Sbjct: 125 EYTIEGEELLARAICHELGHLDGDLYIDHVE 155 >gi|332559342|ref|ZP_08413664.1| Peptide deformylase [Rhodobacter sphaeroides WS8N] gi|332277054|gb|EGJ22369.1| Peptide deformylase [Rhodobacter sphaeroides WS8N] Length = 163 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + E + L +ML MY +G GLAA Q+G + RL V Sbjct: 1 MAVLPILRWPDPRLSQACTAAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ ++ EGCLSIP R V R+ I +R+ Sbjct: 60 MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q + G+ A C QHE+DHL+GI+ +D LS RD ++M Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162 >gi|253580144|ref|ZP_04857411.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA] gi|251848663|gb|EES76626.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA] Length = 158 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L +VSRP+EK+ I +LI +MLE MY G+GLAA Q+G+L R+VV Sbjct: 1 MALRKIRLQGDEVLAKVSRPVEKMTPRIHDLIGDMLETMYDAMGVGLAAPQVGMLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S + EGCLS+P V R ++ V+ +D + Sbjct: 61 IDIGE-----GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKALDEDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +GLLA HE+DHL+G ++ + + Sbjct: 115 EVEYEGEGLLARAFCHEIDHLDGHMYTELVE 145 >gi|269958379|ref|YP_003328166.1| peptide deformylase [Anaplasma centrale str. Israel] gi|269848208|gb|ACZ48852.1| peptide deformylase [Anaplasma centrale str. Israel] Length = 199 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 104/179 (58%), Gaps = 17/179 (9%) Query: 3 KKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 PLV PD L S + + + L ++ML+ MY GIGLAAVQ+GV R+ V Sbjct: 14 VLPLVTLPDSRLSLCSEEVHADDFGQQLETLANDMLDTMYHNKGIGLAAVQVGVHKRIFV 73 Query: 61 IDLQDHAHRKN---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 +DL+ + R P V +NP I+ S+ +EGCLS+PDYR V+ Sbjct: 74 VDLEYGSDRYEVPRDDGAGEFRATCGPTVVVNPVIVEESERLVAMEEGCLSVPDYRETVR 133 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R I V+Y+D N + + I A GLLA CLQHELDHLNG++F+ +S+LKRDM+ +K+ + Sbjct: 134 RPESIVVQYVDLNRRQKYIKACGLLARCLQHELDHLNGVVFLQRISKLKRDMVMEKIRR 192 >gi|168186792|ref|ZP_02621427.1| peptide deformylase [Clostridium botulinum C str. Eklund] gi|169295112|gb|EDS77245.1| peptide deformylase [Clostridium botulinum C str. Eklund] Length = 150 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 62/154 (40%), Positives = 91/154 (59%), Gaps = 6/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ R + +I+ I+ LI++M E MY DG+GLAA Q+G+L RLVV Sbjct: 1 MALRNIRVDKDAILRKNCREVGEIDERILTLIEDMKETMYEADGVGLAAPQVGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+II S+ EGCLS+P + V R +T + ++ + Sbjct: 61 IDVGE-----GPITLINPEIIE-SEGSQTDYEGCLSLPGKQGKVTRPYKVTAKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I +GLLA + HELDHL+G LFID + K Sbjct: 115 QVKIKGEGLLARAICHELDHLDGTLFIDKVIEEK 148 >gi|23010332|ref|ZP_00051057.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 164 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 5/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + PDP+LR I I+ + +L+ +++E + GLAA QIGV R Sbjct: 4 MAMREIRTIPDPVLRTPCDEITTIDDRVRSLVADLVETVDHEGRAGLAANQIGVNLRAFS 63 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ D +NP+I+ SDD+ EGCLS+PD +R+ + V D + Sbjct: 64 WNIDDEIGY-----VLNPRIVELSDDYQDGDEGCLSVPDLWYPTRRAWYARVVGTDLDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++ L+A CLQH+ DHL+G+L++D L R R +++ + + Sbjct: 119 EVVVEGTELMARCLQHKCDHLDGMLYLDRLDRSVRKKAMRELREHL 164 >gi|257414230|ref|ZP_04745678.2| peptide deformylase [Roseburia intestinalis L1-82] gi|257200762|gb|EEU99046.1| peptide deformylase [Roseburia intestinalis L1-82] gi|291541040|emb|CBL14151.1| peptide deformylase [Roseburia intestinalis XB6B4] Length = 163 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+L + R I ++ I LID+ML+ MY +G+GLA Q+GVL R+VV Sbjct: 6 MALRTIRIQGDPVLTKKCREITEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP I+ S + EGCLS+P V R ++ D N + Sbjct: 66 IDIGE-----GPVVMINPVILEKSGE-QTGDEGCLSLPGKAGTVTRPNYVKAHAFDENME 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I L+A + HELDHL+G ++ + Sbjct: 120 EYEIEGTELMARAICHELDHLDGHMYTE 147 >gi|307155367|ref|YP_003890751.1| peptide deformylase [Cyanothece sp. PCC 7822] gi|306985595|gb|ADN17476.1| peptide deformylase [Cyanothece sp. PCC 7822] Length = 175 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 7/173 (4%) Query: 1 MVKK-PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M ++ + +PILR+ ++P+E I ++ I LID+++ S +G+G+AA Q+ YR+ Sbjct: 1 MAEQLEIAQLGNPILRQNAQPVEDITDTAIQQLIDSLIATAASANGVGIAAPQVSQSYRV 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ + N P INPKII +S + EGCLS+P R V R ITV Sbjct: 61 FIVASRPSPRYPNAPEMVPTAMINPKIIAYSAERVKGWEGCLSVPGVRGLVPRYQAITVE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Y+D Q +A QHELDHL+G++F+D L + ++ K++ Sbjct: 121 YLDRQGNLQRQEFTDFVARIFQHELDHLDGMVFVDRLESTRDLYTEQEYQKII 173 >gi|254409726|ref|ZP_05023507.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] gi|196183723|gb|EDX78706.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] Length = 190 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 87/147 (59%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ ++ + K++ I L ML+ MYS DGIGLAA Q+GV +++VID + Sbjct: 20 EIHYLGDRVLRQPAKRVAKVDQSIRQLAHQMLQTMYSADGIGLAAPQVGVNKQIIVIDCE 79 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INP I F QEGCLS+P DVKR + V Y D N + Q + Sbjct: 80 PDNPENPPLILINPTIKRFGQSICDAQEGCLSVPGVYLDVKRPVEVEVAYKDENGRPQRL 139 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 ADGLL+ +QHE+DHL G++F+D + Sbjct: 140 KADGLLSRAIQHEMDHLTGVMFVDRVE 166 >gi|312127907|ref|YP_003992781.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108] gi|311777926|gb|ADQ07412.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108] Length = 166 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+I +V EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGA-----IELVNPEIEQVEGS-AVDVEGCLSVPNVWGEVERPQKVVVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+GLLA + HE+DHL+GILF+D + R Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147 >gi|27904914|ref|NP_778040.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611708|sp|P59493|DEF_BUCBP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|27904312|gb|AAO27145.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 160 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 66/161 (40%), Positives = 98/161 (60%), Gaps = 3/161 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++PI KI++ I N+I NM + MY +GIGLAA Q+ + +++V Sbjct: 1 MSVLKILKYPDDRLRIIAKPISKIDTKIHNIIINMFDTMYYENGIGLAATQVNIPLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID +P+V INPKI S + QEGCLSIP+Y+A++ RS ITV ++ + Sbjct: 61 ID--KIEELNHPLVLINPKITKRSG-LTSIQEGCLSIPNYQAEISRSKKITVTALNYFGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + L+ C+QHE+DHL G L ID+LS L + KK Sbjct: 118 RIKLKTSSTLSICIQHEIDHLIGKLLIDYLSNLTNLKLLKK 158 >gi|327398774|ref|YP_004339643.1| peptide deformylase [Hippea maritima DSM 10411] gi|327181403|gb|AEA33584.1| Peptide deformylase [Hippea maritima DSM 10411] Length = 168 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 70/166 (42%), Positives = 104/166 (62%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + ++PD ILR+ ++ +EKI+ I++L++ M E MY +GIGLAA Q+G+ +LVVIDL+ Sbjct: 2 EVRVYPDGILRKKAKDVEKIDDRIVDLLNQMRETMYKFNGIGLAAEQVGLQEKLVVIDLR 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK-RSAFITVRYMDCNAQHQI 123 + P+ INP II F ++EGCLS+P Y VK R +I V+Y+D N QI Sbjct: 62 P-DGKNQPIELINPVIIASEGIFEEHEEGCLSVPGYYDVVKDRKKWIKVKYLDRNENEQI 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D L+ +QHE+DHLNG LFIDHL +++ K+ K + Sbjct: 121 LETDEFLSVVIQHEIDHLNGKLFIDHLPPTRKEFFKKQWKKRQKEE 166 >gi|83855043|ref|ZP_00948573.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] gi|83842886|gb|EAP82053.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] Length = 155 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 1/150 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +PD L V P+ +I LI +M + MY+ G GLAA Q+G R+ V Sbjct: 1 MSVLDIVTWPDARLTAVCAPVATRTPEIDQLIADMFDTMYAAPGRGLAAPQVGRTERIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P+ INP+I++ SD ++ +EGCLSIP D+ R+ +T+R+ D + Sbjct: 61 FDAGWKEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADG- 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 G A +QHE DHL+GI+ D + Sbjct: 120 THERKFAGAEAVIVQHEYDHLDGIVIYDRV 149 >gi|220907940|ref|YP_002483251.1| peptide deformylase [Cyanothece sp. PCC 7425] gi|219864551|gb|ACL44890.1| peptide deformylase [Cyanothece sp. PCC 7425] Length = 188 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 92/148 (62%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ + I ++N++ L ML+ MYS DGIGLAA Q+GV +L+V+D+ Sbjct: 19 IHYLGDRVLRQPCKRISQVNNETRELARTMLQTMYSADGIGLAAPQVGVNKQLIVVDIHP 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P++ +NP I FS + S+ QEGCLSIP DVKR I V Y D + Q++Y Sbjct: 79 DEAANPPLILVNPVIREFSPEVSLGQEGCLSIPGVYLDVKRPEMIEVAYKDEQGRPQVLY 138 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153 A GLL+ +QHE+DHL G++F+D + + Sbjct: 139 ASGLLSRAIQHEIDHLGGVMFVDRVENM 166 >gi|118137648|pdb|2EW5|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In Complex With Inhibitor gi|118137649|pdb|2EW6|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In Complex With Inhibitor gi|118137650|pdb|2EW7|A Chain A, Crystal Structure Of Helicobacter Pylori Peptide Deformylase Length = 181 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 104/167 (62%), Gaps = 4/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I Sbjct: 1 ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLII 60 Query: 62 DLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 NLPQEDGVQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRF 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 120 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 166 >gi|254384297|ref|ZP_04999640.1| peptide deformylase 2 [Streptomyces sp. Mg1] gi|194343185|gb|EDX24151.1| peptide deformylase 2 [Streptomyces sp. Mg1] Length = 185 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 73/149 (48%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + DP+L + + + LI++M MY+ +G+GLAA QIGV R+ V D Sbjct: 13 VRTMSLLGDPVLHSACAEVTEFGPVLDRLIEDMFATMYAAEGVGLAANQIGVGQRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ D EGCLS+P A R V + + Sbjct: 73 CPDDDDVRHVGHIVNPRLVAADGDEIRGPEGCLSLPGLEAGTDRFDRAVVEGVTSDGAPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + G A CLQHE DHL+G ++ D ++ Sbjct: 133 RVEGTGFFARCLQHECDHLDGTVYADRVT 161 >gi|313113575|ref|ZP_07799163.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624090|gb|EFQ07457.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255] Length = 178 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G+L RL V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTTFDDRLATLLDDMHETMIAADGVGLAGPQVGMLRRLFV 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P + F+NP+I+ S++ EGCLS P + V R A + VR Sbjct: 61 VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPAAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 D + + + A+ LL C+QHE DHL+GI Sbjct: 121 AQDRHGEWFELEAENLLGRCIQHENDHLDGITI 153 >gi|291547147|emb|CBL20255.1| peptide deformylase [Ruminococcus sp. SR1/5] Length = 157 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 87/151 (57%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + SR ++K+ I LI +ML+ MY G+GLAA Q+G+L R+VV Sbjct: 1 MALRTIRVQGDSVLTKKSRTVDKMTPRIGELITDMLDTMYDAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S + EGCLS+P V R ++ V+ D N Sbjct: 61 IDVGE-----GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAFDVNMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 QI +GLLA HE+DHL+G ++ + + Sbjct: 115 EQIYEGEGLLARAFCHEIDHLDGKMYTELVE 145 >gi|238650243|ref|YP_002916094.1| polypeptide deformylase [Rickettsia peacockii str. Rustic] gi|238624341|gb|ACR47047.1| polypeptide deformylase [Rickettsia peacockii str. Rustic] Length = 183 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYTPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIARAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 N-NKSSPIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELS 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG F+D+LS+LKRD++ KKM K ++L Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDILLKKMLKHIKL 171 >gi|119899899|ref|YP_935112.1| peptide deformylase [Azoarcus sp. BH72] gi|119672312|emb|CAL96226.1| probable peptide deformylase [Azoarcus sp. BH72] Length = 177 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 6/163 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L R +RP+ ++ ++ +M+E M++ G+GLAA Q+G+ RLV+ Sbjct: 1 MILDILRMGDPRLMRAARPVCAFGTDELRRIVADMVETMHAAGGVGLAAPQVGIDLRLVI 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V NP + SD+ EGCLS+P R V R + R Sbjct: 61 FGFERSERYPDAPPVPFTVLANPVLTPLSDELEEGWEGCLSVPGLRGWVPRFRHLLYRGA 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 D + + +G A +QHE DHL+GIL+ +S R Sbjct: 121 DIDGKPLEREVEGFHARVVQHECDHLDGILYPARISDFSRFGF 163 >gi|224438109|ref|ZP_03659044.1| peptide deformylase [Helicobacter cinaedi CCUG 18818] Length = 175 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 62/154 (40%), Positives = 99/154 (64%), Gaps = 5/154 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P+PILR+ S +E + + L+D+M E M + G+GLAA+Q+G+ R++VI+L Sbjct: 8 ILKYPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVINLPR 67 Query: 66 HA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++++ + INP +T DD ++EGCLS+P++ VKR ++V Y D Sbjct: 68 DEDKQQYKEDLLEVINPTFLTQEDDIE-WEEGCLSVPEFYESVKRFNKVSVAYKDRFGND 126 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +I+ A+G LA LQHE+DHLNGILF+D L L+R Sbjct: 127 KILQAEGFLAVALQHEIDHLNGILFVDKLPILRR 160 >gi|218904997|ref|YP_002452831.1| peptide deformylase [Bacillus cereus AH820] gi|218538969|gb|ACK91367.1| peptide deformylase [Bacillus cereus AH820] Length = 156 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV R+ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLRVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|330444327|ref|YP_004377313.1| peptide deformylase [Chlamydophila pecorum E58] gi|328807437|gb|AEB41610.1| peptide deformylase [Chlamydophila pecorum E58] Length = 186 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + P+LR ++ I +I DI +L+ +M E M + G+GLAA QIG L V+ Sbjct: 1 MIRRLEYYGSPVLREKAKEITEITEDIRSLVQDMYETMIAHKGVGLAAPQIGKSLSLFVM 60 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P VFINP + + S+ + EGCLSIP R +V R +TV M Sbjct: 61 CVEGETPDGELIFCDFPKVFINPVLSSPSEHLVIAYEGCLSIPGLRGEVFRPDRVTVTAM 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQ 167 + + Q +G A + HE DHL+GIL+ID + + K+ + Sbjct: 121 NLDGQKFSETLEGFPARIVMHETDHLHGILYIDRMEEPRDAKKFKVALEKIKR 173 >gi|50954573|ref|YP_061861.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951055|gb|AAT88756.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 188 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 7/156 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I D +L + + + ++ L+ M + M G+GLA Q+GV RL V Sbjct: 1 MAVLPIRITGDRVLHTRADEVTAFDRELRTLVAEMFDTMDEAPGVGLAGPQVGVPLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSD------DFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D + V INP + S D EGCLS P R ++R+ + ++ Sbjct: 61 YGWTDDDEVLHRGVAINPVL-WQSPLETGPLDEDAECEGCLSFPGERFPLRRAERVILQA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +D + +G LA QHE DHL G+L++D L Sbjct: 120 VDLEGAPFEVRTEGWLARIFQHECDHLEGVLYVDRL 155 >gi|167768544|ref|ZP_02440597.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1] gi|317498700|ref|ZP_07956992.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710068|gb|EDS20647.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1] gi|291560506|emb|CBL39306.1| peptide deformylase [butyrate-producing bacterium SSC/2] gi|316894042|gb|EFV16232.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 159 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ + ++++ + L+++M + MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRQIRVLGDDVLRKKCKEVKEMTPRMHTLVEDMYDTMYEAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + + +NP I T + V +EGCLS+P A VKR + D + Sbjct: 61 IDTGEEGEC---VTLVNPVI-TLKEGEQVGEEGCLSLPGKVAVVKRPDHVICEAFDEDMN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + GL A L HE DHL+GIL+ D RD+ +++ Sbjct: 117 PITVEGFGLFARALCHETDHLDGILYPDVAEEPARDVTMEEVE 159 >gi|291518517|emb|CBK73738.1| peptide deformylase [Butyrivibrio fibrisolvens 16/4] Length = 164 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFP-DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + D +L + +P++++ + LID+M + MY DG+GLAA Q+GVL R+ Sbjct: 1 MAVLEIREYGKDDVLLKTCKPVKELTPKLRTLIDDMYDTMYDADGVGLAAPQVGVLRRIC 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + P+ INP ++ S + EGCLS+P V R + V+ ++ + Sbjct: 61 VIDIGE-----GPVTLINPVVLETSGE-QTGNEGCLSVPGKTGIVTRPNYAKVKALNEDM 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ + L+A L HE+DHL+G ++ + + Sbjct: 115 EEFIVEGEELMARALLHEIDHLDGHIYTEKVE 146 >gi|260434658|ref|ZP_05788628.1| peptide deformylase [Synechococcus sp. WH 8109] gi|260412532|gb|EEX05828.1| peptide deformylase [Synechococcus sp. WH 8109] Length = 201 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR+ +R I K+N + L +ML MY+ GIGLAA Q+G+ +L+VIDL Sbjct: 32 EIHTLGDEVLRQSARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLD 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP+I S Y+EGCLSIP DV R I + + D + + + Sbjct: 92 LENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGL+A C+QHE+DHLNG+LF+D ++ D + K++ + Sbjct: 152 KADGLMARCIQHEMDHLNGVLFVDRVTDE--DGLQKELKE 189 >gi|312141214|ref|YP_004008550.1| peptide deformylase def [Rhodococcus equi 103S] gi|325673956|ref|ZP_08153646.1| peptide deformylase [Rhodococcus equi ATCC 33707] gi|311890553|emb|CBH49871.1| peptide deformylase Def [Rhodococcus equi 103S] gi|325555221|gb|EGD24893.1| peptide deformylase [Rhodococcus equi ATCC 33707] Length = 205 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 13/177 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L ++P+ + +++ +LI +M E M + +G+GLAA Q+GV RL V Sbjct: 1 MAILPIRIVGDPVLHEPTKPVTESPAELADLIRDMYETMDAANGVGLAANQVGVAKRLFV 60 Query: 61 IDLQDHAHRKN--------PMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRS 107 D D+A K+ +NP +I D EGCLS+P + R+ Sbjct: 61 YDCPDYAAGKDASGKPVMRRGCVVNPVLETSEIPETMPDEDDDVEGCLSVPGEQFPTGRA 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + V D + I G A LQHE HL+G L++D L + K + + Sbjct: 121 DWAKVTGTDEHGNPVEIEGHGFFARMLQHETGHLDGFLYVDVLIGRNKRAAKKTIKR 177 >gi|148241454|ref|YP_001226611.1| peptide deformylase [Synechococcus sp. RCC307] gi|166198524|sp|A5GQU9|DEF_SYNR3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|147849764|emb|CAK27258.1| Peptide deformylase [Synechococcus sp. RCC307] Length = 201 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 62/140 (44%), Positives = 86/140 (61%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR+ ++ I K+N + L ML MY+ GIGLAA Q+GV +L+VIDL P+ Sbjct: 41 LRKPAKRISKVNEQVRELAREMLRSMYAAHGIGLAAPQVGVHQQLLVIDLDPEEAANPPL 100 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V INP+I+ S Y+EGCLSIP +V R + + V+Y D + Q ADGL+A C Sbjct: 101 VLINPEIVATSGALDTYEEGCLSIPGVYLNVVRPSQVDVKYRDELGRPQRRKADGLMARC 160 Query: 134 LQHELDHLNGILFIDHLSRL 153 + HE+DHLNG+LF+D +S Sbjct: 161 ILHEMDHLNGVLFVDRVSDE 180 >gi|302872125|ref|YP_003840761.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47] gi|302574984|gb|ADL42775.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47] Length = 166 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 93/153 (60%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I+ D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIKIYEDEILRKRSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+I +S+ V EGCLS+P+ +V+R + V D Sbjct: 61 IDIGEGA-----IELVNPQI-EYSEGSVVDVEGCLSVPNVWGEVERPQKVVVNAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+GLLA + HE+DHL+GILF+D + R Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147 >gi|262341227|ref|YP_003284082.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272564|gb|ACY40472.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 171 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 3/168 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + P+VI+ +PILR+ I+ + +I LI +M E ++ GIGLAA QIG RL Sbjct: 1 MVLPIVIYGNPILRKKCLDIDLCSCKKEINQLIKDMFETIHQAKGIGLAAPQIGKNIRLF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +++ + VFIN KI+ + EGCLSIP VKR + + + Y D N Sbjct: 61 IVETPYLDGK-YKEVFINAKILKIHGKEYKFNEGCLSIPGIMGYVKRKSNVLIEYYDHNW 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q G+ A + HE DHL+G LFID+ S ++ I KK+ L + Sbjct: 120 KKQKKTLTGICARVILHEYDHLDGKLFIDYFSSTRKKRIEKKLISLSE 167 >gi|319951883|ref|YP_004163150.1| peptide deformylase [Cellulophaga algicola DSM 14237] gi|319420543|gb|ADV47652.1| peptide deformylase [Cellulophaga algicola DSM 14237] Length = 196 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 12/162 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+V I K + L++NM E MY+ G+GLAA QIG+ RL VI Sbjct: 1 MILPIIAYGDPVLRKVGTDIAKDYPKLETLVENMWETMYNASGVGLAAPQIGLPIRLFVI 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + ++ VF+N KI + + + EGCLSIPD R DV R Sbjct: 61 DTTPFSEDEDLSPEDQKALDGFKKVFVNAKIEEETGEEWNFNEGCLSIPDVREDVNRKET 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I + Y+D N + GLLA +QHE DH+ GILF D LS Sbjct: 121 IKITYLDENFNEKSESYGGLLARVIQHEYDHIEGILFTDKLS 162 >gi|254712281|ref|ZP_05174092.1| peptide deformylase [Brucella ceti M644/93/1] gi|254715352|ref|ZP_05177163.1| peptide deformylase [Brucella ceti M13/05/1] gi|261217080|ref|ZP_05931361.1| peptide deformylase-like protein [Brucella ceti M13/05/1] gi|261319950|ref|ZP_05959147.1| peptide deformylase-like protein [Brucella ceti M644/93/1] gi|260922169|gb|EEX88737.1| peptide deformylase-like protein [Brucella ceti M13/05/1] gi|261292640|gb|EEX96136.1| peptide deformylase-like protein [Brucella ceti M644/93/1] Length = 164 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A P ++I P+I+ ++ +QEG +S+P V+R A I +RY D + Sbjct: 61 LELDRAAG---PKIYIYPEIVWACEEKIRHQEGSVSMPGVVDKVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|294339982|emb|CAZ88345.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp. 3As] Length = 177 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ DP L RV++P+ K + ++ LI ++ E M + G+GLAA QIGV +V Sbjct: 1 MTLHTILRMGDPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP+I D EGCLS+P R V R I R Sbjct: 61 IFGFSQSARYPEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 MD A+G A +QHE DHL G L+ + R T ++ Sbjct: 121 MDPYGNPIDREAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168 >gi|296135817|ref|YP_003643059.1| peptide deformylase [Thiomonas intermedia K12] gi|295795939|gb|ADG30729.1| peptide deformylase [Thiomonas intermedia K12] Length = 177 Score = 182 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ DP L RV++P+ K + ++ LI ++ E M + G+GLAA QIGV +V Sbjct: 1 MTLHTILRMGDPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP+I D EGCLS+P R V R I R Sbjct: 61 IFGFSQSARYPEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 MD A+G A +QHE DHL G L+ + R T ++ Sbjct: 121 MDAYGNPIDREAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168 >gi|218442239|ref|YP_002380568.1| peptide deformylase [Cyanothece sp. PCC 7424] gi|218174967|gb|ACK73700.1| peptide deformylase [Cyanothece sp. PCC 7424] Length = 176 Score = 182 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 6/168 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +PILR+ ++ +E I + LID+++ S +G+G+AA Q+ YRL ++ Sbjct: 6 EIAQLGNPILRQNAQSVENITDITLQTLIDDLIATAASANGVGIAAPQVSQSYRLFIVAS 65 Query: 64 QD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + +A NP INP+II+ S + EGCLS+P R V R ITV Y+D Sbjct: 66 RPSPRYPNAPEMNPTPMINPRIISHSPEKVKGWEGCLSVPGLRGLVPRYHTITVEYLDRY 125 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q +A QHELDHL+GILF+D L + ++ K++ Sbjct: 126 GNLQRQELTDFVARIFQHELDHLDGILFVDRLESSQDLYTEEEYQKII 173 >gi|152989916|ref|YP_001355638.1| peptide deformylase [Nitratiruptor sp. SB155-2] gi|151421777|dbj|BAF69281.1| formylmethionine deformylase [Nitratiruptor sp. SB155-2] Length = 176 Score = 182 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 94/153 (61%), Gaps = 4/153 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PD L S+ +E + ++ L+D+M E M + +GIGLAA+Q+ V R ++I Sbjct: 1 MIRQIITYPDKRLFLRSKEVENFDEELQTLLDDMYETMVAKNGIGLAAIQVAVPLRALII 60 Query: 62 DLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L D H+++ + INP I+ VY EGCLS+PDY DV+R+ ++ V Y D Sbjct: 61 NLPDEEGKQHKEDLLELINPVIVEKKG-TQVYTEGCLSVPDYYDDVERAEWVKVEYQDRY 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + DGLLA +QHE+DHL+G LFI+ L Sbjct: 120 GNKKTLETDGLLAVAVQHEMDHLDGHLFIEKLP 152 >gi|308535392|ref|YP_002140756.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] gi|308052737|gb|ACH40960.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] Length = 184 Score = 182 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 107/169 (63%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + +V +P+ IL+ + +E+I+ + L+D++++ M++ G +G+A+ QIGV R+ Sbjct: 17 MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMHAGPGSVGVASPQIGVSLRVC 76 Query: 60 VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 VID+ + H K+ ++ INP+I+ S +V +EGC+S+PDY DV+RS +T+R+ Sbjct: 77 VIDVSKNRHGKDNNHGLLLMINPEILARSGA-AVMREGCMSVPDYTGDVERSTELTLRFT 135 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + A G A +QHELDHL+G+LF+D ++ LK + +K K Sbjct: 136 EPDGTVREFEASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 184 >gi|170754628|ref|YP_001782053.1| peptide deformylase [Clostridium botulinum B1 str. Okra] gi|169119840|gb|ACA43676.1| peptide deformylase [Clostridium botulinum B1 str. Okra] Length = 147 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 55/150 (36%), Positives = 93/150 (62%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR IEKI+ I+ L+++M+E MY+ +G+GLAA Q+G+L R VV Sbjct: 1 MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II + EGCLS+P + +V+R + V+ ++ + Sbjct: 61 IDVGE-----GLIKLINPEIIETEGN-QKDVEGCLSVPGEQGEVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + LLA HE+DHL+G+LF+D + Sbjct: 115 EVVLEGEDLLARAFCHEIDHLDGVLFVDKV 144 >gi|329942666|ref|ZP_08291445.1| peptide deformylase [Chlamydophila psittaci Cal10] gi|332287261|ref|YP_004422162.1| peptide deformylase [Chlamydophila psittaci 6BC] gi|313847847|emb|CBY16841.1| peptide deformylase [Chlamydophila psittaci RD1] gi|325507284|gb|ADZ18922.1| peptide deformylase [Chlamydophila psittaci 6BC] gi|328814926|gb|EGF84915.1| peptide deformylase [Chlamydophila psittaci Cal10] gi|328914507|gb|AEB55340.1| peptide deformylase [Chlamydophila psittaci 6BC] Length = 184 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + P LRR + I I +I L +M E M + G+GLAA Q+G RL V+ Sbjct: 1 MIRELEYYGSPTLRREADAILDITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVRLFVM 60 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ + P V+INP + S+D + +EGCLSIP RADV R ITV+ + Sbjct: 61 CVEGETEDGDLIFCDFPKVYINPVLSDVSEDLVLGREGCLSIPGLRADVYRPRSITVKAI 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167 + + Q + +G A + HE DHLNG+L+ID + K + K+ + Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLNGVLYIDKMEEPKDYKKFKSTLEKIRR 173 >gi|210622388|ref|ZP_03293141.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275] gi|210154270|gb|EEA85276.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275] Length = 146 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +P+LR+ +P+ K + + L+D+M + MY DG+GLAA Q+G+L R VV Sbjct: 1 MALRRVTKMGEPVLRKKCKPVTKFDEKLGQLLDDMADTMYEADGVGLAAPQVGMLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II + + EGCLS+ + V R F+ V+ D + + Sbjct: 61 IDIGE-----GLIELINPEIIETAGE-QTDIEGCLSVDNINEPVTRPYFVKVKAQDRHGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA HELDHL+GILF+D + + Sbjct: 115 EFELAGEELLARAFCHELDHLDGILFVDRIEK 146 >gi|290962175|ref|YP_003493357.1| polypeptide deformylase [Streptomyces scabiei 87.22] gi|260651701|emb|CBG74826.1| polypeptide deformylase [Streptomyces scabiei 87.22] Length = 156 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 73/153 (47%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 + + ++ L+++M MY G+GLAA Q+G R+ V D D ++ + Sbjct: 4 PCEEVTEFGPELARLVEDMFATMYDARGVGLAANQVGRALRVFVYDCPDDEDVRHLGHVV 63 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP++++ EGCLS+P A V+R V + ++ G A CLQH Sbjct: 64 NPRLVSAEGIVLRGPEGCLSLPGLEAGVERYDEAAVEGFTVDGDRVRVWGSGFFARCLQH 123 Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 E DHL G ++ D LS +R + +K ++ R Sbjct: 124 ECDHLEGRVYADRLSGWRRRRVLRKAARAPWGR 156 >gi|260219440|emb|CBA26285.1| Peptide deformylase 2 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 179 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 7/160 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV++P+ + +SD + L+ +ML+ M + +G GLAA QIGV +LV Sbjct: 1 MTVRDILKMGDPRLLRVAQPVTEFDSDALHLLVTDMLDTMRAANGAGLAAPQIGVDLQLV 60 Query: 60 VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + R P V NP I D+ EGCLS+P R V R + I Sbjct: 61 IFGGNERNPRYPDRPIVPPTVLCNPVITPLGDEEENDWEGCLSVPGLRGVVPRWSRIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D DG A +QHE DH+ G L+ + Sbjct: 121 GFDQYGDAIDRTVDGFHARVVQHECDHVWGKLYPMRVRDF 160 >gi|307322251|ref|ZP_07601618.1| peptide deformylase [Sinorhizobium meliloti AK83] gi|306892102|gb|EFN22921.1| peptide deformylase [Sinorhizobium meliloti AK83] Length = 172 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 95/169 (56%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP P+L + I + + L D++++ M + GIG+ A IG+L RL V Sbjct: 1 MAVRPIIRFPSPLLTTSAERIGRFGGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I++ P F+NP+I+ S + + + EG +S+P +V+R + + + + + Sbjct: 61 IEVDPQMG---PRSFVNPEIVWQSSETARHSEGSVSMPGVAEEVERPVRVRISFQTLDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GL+A CLQHE+D LNGI +I LSRLKR+ K+ K + Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKFNRAE 166 >gi|332981562|ref|YP_004463003.1| peptide deformylase [Mahella australiensis 50-1 BON] gi|332699240|gb|AEE96181.1| peptide deformylase [Mahella australiensis 50-1 BON] Length = 165 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DPILR+ +RP+ KI+ ++ L+D+M+E M +G+GLAA Q+G+L R+VV Sbjct: 1 MALREIRKFKDPILRKKARPVVKIDKRLLTLLDDMVETMKKAEGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D INP+II S + V EGCLS P VKR +TVR MD + Sbjct: 61 IADMDEDKIIE---LINPEIIAQSGE-QVGPEGCLSFPGMSGTVKRPEQVTVRAMDRKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + G++A HE+DHL+GI+F+D + Sbjct: 117 IREVTGTGIIARAFCHEIDHLDGIVFLDKVIPE 149 >gi|227500109|ref|ZP_03930180.1| peptide deformylase [Anaerococcus tetradius ATCC 35098] gi|227217824|gb|EEI83121.1| peptide deformylase [Anaerococcus tetradius ATCC 35098] Length = 158 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 91/149 (61%), Gaps = 3/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR++SR + +I I L+D+M + MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRKEGDPILRKISRNVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D H + +NP+II + V EGCLSIP++ A VKR + V+Y++ N + Sbjct: 61 VD--PHDDSTGLIKLVNPEIIEEDGE-QVGIEGCLSIPNFNATVKRPEHVKVKYLNENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 +I A G A L HE+DHLNGILF D Sbjct: 118 EKIWDAHGFPAEILSHEIDHLNGILFRDK 146 >gi|187778895|ref|ZP_02995368.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC 15579] gi|187772520|gb|EDU36322.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC 15579] Length = 147 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 56/150 (37%), Positives = 92/150 (61%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR IEKI+ I+ L+++M E MYS +G+GLAA Q+G+L R+VV Sbjct: 1 MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMAETMYSAEGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II EGCLS+P + +V+R + V+ ++ + Sbjct: 61 IDVGE-----GLIKLINPEIIETEGS-QKDVEGCLSVPGEQGEVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + LLA HE+DHL+G+LF+D + Sbjct: 115 QIVLEGEELLARAFCHEIDHLDGVLFVDKV 144 >gi|289523051|ref|ZP_06439905.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503594|gb|EFD24758.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 165 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 89/159 (55%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P+PILR ++ + N D+ LI++M E MY+ DG+GLAA Q+G+ + V Sbjct: 1 MAILEVIKYPNPILRSKNKIVTAFNDDLKKLIEDMYETMYANDGLGLAAPQVGINLMVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +NP I+ + +EGCLS P+ D++R + + D N + Sbjct: 61 VDYEGK-----KYTLVNPAILEKRGE-QTGREGCLSFPEVFEDIERPEIVKIEAFDENGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I A GLLA HE+DHL+G L ID +S +KR+MI Sbjct: 115 KYAIEASGLLARAFCHEIDHLHGRLIIDMVSPVKRNMIQ 153 >gi|126660127|ref|ZP_01731246.1| polypeptide deformylase [Cyanothece sp. CCY0110] gi|126618570|gb|EAZ89320.1| polypeptide deformylase [Cyanothece sp. CCY0110] Length = 169 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 6/153 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +PILR+ ++ + I + + LID +L G+G+AA Q+ YRL ++ Sbjct: 7 EIAQVGNPILRQQAQYVTDITDEKLQQLIDTLLTTAIDAKGVGIAAPQVSQSYRLFIVCS 66 Query: 64 QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ + P V INP +++ S++ EGCLS+P R V R ITV Y+D Sbjct: 67 HPNSRYPDAPSMEPTVMINPCLVSHSEEMVKGWEGCLSVPGVRGLVSRYQKITVEYLDRY 126 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +A QHELDHLNGILFID ++ Sbjct: 127 GKLHQQEFTDFVARIFQHELDHLNGILFIDRVN 159 >gi|152976233|ref|YP_001375750.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024985|gb|ABS22755.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98] Length = 158 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M + DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVILLKDMYETMVAADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 IDIGDDTGKIE---LINPVILEKRGE-QVGPEGCLSFPGLYGEVERAEYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 IFLLEANGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|304440681|ref|ZP_07400565.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370868|gb|EFM24490.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 160 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 90/153 (58%), Gaps = 5/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR++S+ + IN + LI +M E M ++G+GLAA Q+G+L R++ Sbjct: 1 MAIRNIRTDEDPILRKISKEVNDINDRMKTLISDMFETMDYSNGVGLAAPQVGILRRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D QD FINPKII + V EGCLS+P + V R+ I V YMD N + Sbjct: 61 LDDQDGLR----GAFINPKIIEKDGE-QVGPEGCLSVPGKQGTVNRANHIVVTYMDENGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + A+G A QHE+DHLNGIL+ D + + Sbjct: 116 EKTLEAEGFTARIFQHEIDHLNGILYTDLATEI 148 >gi|126738019|ref|ZP_01753740.1| peptide deformylase [Roseobacter sp. SK209-2-6] gi|126720516|gb|EBA17221.1| peptide deformylase [Roseobacter sp. SK209-2-6] Length = 165 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + + +I ++ ++++ M + G+G+ A QIGV+ RL V Sbjct: 1 MSVRPCLPWPDQRLRTAATEVVEITDEVRTTWQDLIDTMEAMPGVGMGANQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+I+ S ++E ++P A +KR +TVRYMD N + Sbjct: 61 VD--GSSERGRAVRMANPEILHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+ AT +QH++DHL+G L+ D LS++KRDM+ KK K Sbjct: 119 ITERDFVGIEATSVQHQIDHLDGKLYFDRLSKVKRDMLIKKSKKF 163 >gi|297559276|ref|YP_003678250.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843724|gb|ADH65744.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 184 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V F DP+L + P+ + + L+D++LE + + GLAA QIGV R+ Sbjct: 1 MTMRPIVRFGDPVLVTPTTPVTRFDKHTRALVDDLLETVEAPGRAGLAANQIGVGLRVFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ INP+I S++ EGCLS+P R+ + V +D + Sbjct: 61 YNVEGRIGY-----VINPRIAELSEEVQEGDEGCLSVPRLWYPATRAEYAVVTGVDLRNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL+A CLQHE DHL+G+++I+ L R + + + Sbjct: 116 PVTVEGTGLMARCLQHETDHLDGMVYIERLDPQTRKRALRDIRR 159 >gi|86151304|ref|ZP_01069519.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94] gi|315123790|ref|YP_004065794.1| peptide deformylase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841651|gb|EAQ58898.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94] gi|315017512|gb|ADT65605.1| peptide deformylase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 175 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 99/158 (62%), Gaps = 3/158 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S+ + K ++++ L+D+M E M +++G+GLAA+Q+ + R++++ Sbjct: 1 MVRKIITYPNPRLFLNSKIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60 Query: 62 DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D +++ + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 61 NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158 >gi|150390546|ref|YP_001320595.1| peptide deformylase [Alkaliphilus metalliredigens QYMF] gi|167012061|sp|A6TRW8|DEF_ALKMQ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149950408|gb|ABR48936.1| peptide deformylase [Alkaliphilus metalliredigens QYMF] Length = 147 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 93/153 (60%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR+ SR ++KI+S I L+D+M+E MY DG+GLAA Q+G+L +++V Sbjct: 1 MAIRLIRTDDDPVLRKKSRVVDKIDSRIHTLLDDMIETMYEADGVGLAAPQVGILKQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II + EGCLS+P + +V+R A + VR ++ + Sbjct: 61 IDVGE-----GVIELINPEIIKETGS-QCDVEGCLSLPGHSGEVERPAIVKVRGLNRQGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I LLA L HE+DHLNGILF D + + Sbjct: 115 MVEIQGTELLARALCHEIDHLNGILFTDKIIKE 147 >gi|254424040|ref|ZP_05037758.1| peptide deformylase [Synechococcus sp. PCC 7335] gi|196191529|gb|EDX86493.1| peptide deformylase [Synechococcus sp. PCC 7335] Length = 187 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 65/144 (45%), Positives = 94/144 (65%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 D +LR+ ++ + KI++ + +L+ ML+ MYS DGIGLAA Q+GV +L+VID Sbjct: 21 QMGDRVLRQPAKRVAKIDNALRDLVRKMLQTMYSEDGIGLAAPQVGVNKQLLVIDADPEN 80 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + +V +NPKII +SD+ + QEGCLSIP DV R A I V + D N + + + AD Sbjct: 81 EAASALVLVNPKIIRYSDELAAGQEGCLSIPGVYLDVIRPAAIEVSFKDENGRPRKLKAD 140 Query: 128 GLLATCLQHELDHLNGILFIDHLS 151 LLA +QHE+DHLNG+LF+D + Sbjct: 141 DLLARVIQHEMDHLNGVLFVDRVE 164 >gi|148380464|ref|YP_001255005.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|153931783|ref|YP_001384687.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153937071|ref|YP_001388208.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|153938227|ref|YP_001391806.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|168180607|ref|ZP_02615271.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|226949863|ref|YP_002804954.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|148289948|emb|CAL84061.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|152927827|gb|ABS33327.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152932985|gb|ABS38484.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|152934123|gb|ABS39621.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|182668570|gb|EDT80549.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|226842477|gb|ACO85143.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|295319831|gb|ADG00209.1| peptide deformylase [Clostridium botulinum F str. 230613] gi|322806777|emb|CBZ04346.1| peptide deformylase [Clostridium botulinum H04402 065] Length = 147 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 55/150 (36%), Positives = 93/150 (62%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR IEKI+ I+ L+++M+E MY+ +G+GLAA Q+G+L R VV Sbjct: 1 MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II + EGCLS+P + +V+R + V+ ++ + Sbjct: 61 IDVGE-----GLIKLINPEIIETEGN-QKDVEGCLSVPGEQGEVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + LLA HE+DHL+G+LF+D + Sbjct: 115 EIVLEGEDLLARAFCHEIDHLDGVLFVDKV 144 >gi|326203181|ref|ZP_08193047.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] gi|325986827|gb|EGD47657.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] Length = 159 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + +LR++SRP+E I+ I++L+++M + MY DG+GLAA QIGVL R+VV Sbjct: 1 MAYRQIRKDGEEVLRKISRPVENIDKKILSLLEDMADTMYRADGVGLAAPQIGVLKRMVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + INP I+ S + EGCLSI VKR +T++Y D N + Sbjct: 61 IDVGDGLYE-----MINPVILEQSGE-QDGIEGCLSILGVLGKVKRPMNVTLKYTDRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A A + HELDHL+GIL+ D ++ + ++M K Sbjct: 115 DITIEASEFFARAICHELDHLDGILYKDKAYKMYTEKEFEEMQK 158 >gi|67923097|ref|ZP_00516588.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] gi|67855050|gb|EAM50318.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] Length = 188 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 87/147 (59%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D LR+ ++ I K++ I L ML+ MYS+ GIGLAA Q+ + +L+V+D + Sbjct: 18 DIHFLGDRALRQPAKRIAKVDDSIRKLAKEMLQTMYSSQGIGLAAPQVAIQKQLIVVDCE 77 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +P++ INPKI FS + V +EGCLSIP DV R I V + D + + I Sbjct: 78 PDNPANSPLILINPKITVFSKELCVVEEGCLSIPGVYLDVTRPKAIEVSFKDEQGKPRKI 137 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151 A LLA +QHE+DHLNG++F+D + Sbjct: 138 QATELLARVIQHEMDHLNGVMFVDRVD 164 >gi|196234527|ref|ZP_03133350.1| peptide deformylase [Chthoniobacter flavus Ellin428] gi|196221407|gb|EDY15954.1| peptide deformylase [Chthoniobacter flavus Ellin428] Length = 187 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 16/182 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V + +P+LR R ++ ++ I L +MLE M + +G+GLAA QIGV ++ VI Sbjct: 1 MILEIVKYGNPVLREKGREVKDVDEKIKQLSVDMLETMRAANGVGLAAQQIGVPIQMTVI 60 Query: 62 DLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 D+ R P+V +NP + FS++ EGCLS PD A++ R Sbjct: 61 DVAGIEDRPSAMWINDKEVPIEEHMPLVLLNPVL-KFSEEKESGNEGCLSFPDITAEITR 119 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 S+ + + + A GLLA LQHE DHL+G+LFID ++ + I+ K+ +L Sbjct: 120 SSGVQCTATLLDGKKIEFEAAGLLARALQHETDHLHGVLFIDRMNAATKAGISGKLKRLQ 179 Query: 167 QL 168 + Sbjct: 180 KE 181 >gi|329912478|ref|ZP_08275758.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] gi|327545607|gb|EGF30770.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] Length = 178 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV+ P+ + + + LI +M E M++ +G GLAA QIGV +LV Sbjct: 1 MTVREILKMGDPRLLRVAEPVTEFDTPAMRLLIADMFETMHAVNGAGLAAPQIGVNLQLV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + A + INP + SD+ EGCLS+P R V R + Sbjct: 61 IYGSRNNVRYPEAPEVPETILINPVLTPLSDELVENWEGCLSVPGLRGVVPRWQALHYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D DG A +QHE DHL G+L+ ++ R Sbjct: 121 VDQFGAVISRDVDGFHARVVQHECDHLIGVLYPMRVTDFSR 161 >gi|315644089|ref|ZP_07897259.1| peptide deformylase [Paenibacillus vortex V453] gi|315280464|gb|EFU43753.1| peptide deformylase [Paenibacillus vortex V453] Length = 172 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 96/151 (63%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M K +V F DPILR+V+RP++ +N+ + ++D+M E +Y + G GLAA QIG+L RL+ Sbjct: 1 MTVKAIVPFGDPILRKVARPVDPVNARALKILDDMAETLYDSAGRAGLAAPQIGILRRLI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + + INP+I+ + + V E CLS P Y V+R+ + V+ ++ Sbjct: 61 VMDCGE-----GLIELINPEIVEMNGE-QVGPEACLSYPGYYGYVQRAHHVKVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I+ + LA C+QHE+DHLNG+LF+DH+ Sbjct: 115 ETIILEGEDYLARCMQHEIDHLNGLLFVDHV 145 >gi|91788452|ref|YP_549404.1| peptide deformylase [Polaromonas sp. JS666] gi|91697677|gb|ABE44506.1| Peptide deformylase [Polaromonas sp. JS666] Length = 179 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 7/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV++P+ ++D + L+ +M + M + DG GLAA QIGV ++V Sbjct: 1 MTVREILKMGDPRLFRVAQPVAAFDTDALHLLVSDMFDTMRAADGAGLAAPQIGVNLQVV 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A V +NP I S D EGCLS+P R V R + I Sbjct: 61 IFGADQVNPRYPDAPLVPRTVLLNPVITPLSADEEEGWEGCLSVPGLRGLVPRFSHIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D DG A +QHE DHL G L+ + + Sbjct: 121 GFDQYGDPIDRTVDGFHARVVQHECDHLMGKLYPMRIRDFTQ 162 >gi|91784124|ref|YP_559330.1| peptide deformylase [Burkholderia xenovorans LB400] gi|296158911|ref|ZP_06841739.1| peptide deformylase [Burkholderia sp. Ch1-1] gi|91688078|gb|ABE31278.1| Formylmethionine deformylase [Burkholderia xenovorans LB400] gi|295890786|gb|EFG70576.1| peptide deformylase [Burkholderia sp. Ch1-1] Length = 177 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L R++ P++ + ++ L+ +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVI 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGHNERYPDAPPVPETVLINPTITPVSQDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A+G A +QHE DHL G L+ ++ + T+ + Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAKFGFTEVL 167 >gi|222529031|ref|YP_002572913.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725] gi|254767570|sp|B9MR36|DEF_ANATD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|222455878|gb|ACM60140.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725] Length = 166 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+I +V EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGA-----IELVNPEIEQVEGS-AVDVEGCLSVPNVWGEVERPQKVVVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+GLLA + HE+DHL+GILF+D + R Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147 >gi|257066166|ref|YP_003152422.1| peptide deformylase [Anaerococcus prevotii DSM 20548] gi|256798046|gb|ACV28701.1| peptide deformylase [Anaerococcus prevotii DSM 20548] Length = 158 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 89/149 (59%), Gaps = 3/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR+ S+ + +I I L+D+M + MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRKEGDPILRKTSKLVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D H + +NP+II SD + EGCLSIP++ A VKR + V+Y+D Sbjct: 61 VD--PHDDTTGLVKLVNPEIIE-SDGEQIGIEGCLSIPNFNATVKRPEHLKVKYLDEEGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 +I A G A L HE+DHL+GILF D Sbjct: 118 EKIWDAHGFPAEILSHEIDHLDGILFRDK 146 >gi|222618921|gb|EEE55053.1| hypothetical protein OsJ_02752 [Oryza sativa Japonica Group] Length = 260 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 85/162 (52%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 60 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 119 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP + S VY+E CLS P A+V R + + D + Sbjct: 120 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 179 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 GL A QHE DHL GILF D +S + + + + L + Sbjct: 180 LSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEK 221 >gi|313144549|ref|ZP_07806742.1| peptide deformylase [Helicobacter cinaedi CCUG 18818] gi|313129580|gb|EFR47197.1| peptide deformylase [Helicobacter cinaedi CCUG 18818] Length = 179 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 62/154 (40%), Positives = 99/154 (64%), Gaps = 5/154 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P+PILR+ S +E + + L+D+M E M + G+GLAA+Q+G+ R++VI+L Sbjct: 12 ILKYPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVINLPR 71 Query: 66 HA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++++ + INP +T DD ++EGCLS+P++ VKR ++V Y D Sbjct: 72 DEDKQQYKEDLLEVINPTFLTQEDDIE-WEEGCLSVPEFYESVKRFNKVSVAYKDRFGND 130 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +I+ A+G LA LQHE+DHLNGILF+D L L+R Sbjct: 131 KILQAEGFLAVALQHEIDHLNGILFVDKLPILRR 164 >gi|170759595|ref|YP_001787825.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] gi|169406584|gb|ACA54995.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] Length = 147 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR IEKI+ I+ L+++M+E MYS +G+GLAA Q+G+L R VV Sbjct: 1 MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II + EGCLS+P + +V+R + V+ ++ + Sbjct: 61 IDVGE-----GLIKLINPEIIETEGN-QKDVEGCLSVPGEQGEVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + LLA HE+DHL+G+LF+D + Sbjct: 115 EIVLEGEDLLARAFCHEIDHLDGVLFVDKV 144 >gi|325104375|ref|YP_004274029.1| peptide deformylase [Pedobacter saltans DSM 12145] gi|324973223|gb|ADY52207.1| peptide deformylase [Pedobacter saltans DSM 12145] Length = 194 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 15/183 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++ + IL++ IEK ++ LI +M E M + +G GLA+ QIG+ RL ++ Sbjct: 1 MKRSILAYGHHILKQKCNYIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60 Query: 62 DLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 D + + FIN KII S++ +EGCLSIP+ VKR Sbjct: 61 DSKSTFDNLGEEDRKFYFPQDDKGIMETFINAKIIQRSEELWDDEEGCLSIPNLFYKVKR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + IT+ Y + N + QI G A +QHE DH G+L++D+L L + ++ K+ K++ Sbjct: 121 NWAITIEYYNRNFEKQIRTFSGTTARMIQHEYDHTEGVLYLDYLKPLTKRLMASKLQKIL 180 Query: 167 QLR 169 + + Sbjct: 181 KGQ 183 >gi|40889670|pdb|1RL4|A Chain A, Plasmodium Falciparum Peptide Deformylase Complex With Inhibitor gi|40889671|pdb|1RL4|B Chain B, Plasmodium Falciparum Peptide Deformylase Complex With Inhibitor Length = 188 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V +PDPILRR S + + ++ ++ M ++MY + GIGL+A Q+ + R++V + L Sbjct: 11 IVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALY 70 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +N +FINP I+ S EGCLS P V+R + +++ Y D N + Sbjct: 71 EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 130 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID ++++ + + K+++L++ Sbjct: 131 ILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 173 >gi|170692137|ref|ZP_02883300.1| peptide deformylase [Burkholderia graminis C4D1M] gi|170142567|gb|EDT10732.1| peptide deformylase [Burkholderia graminis C4D1M] Length = 177 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L R++ P++ + ++ LI +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A+G A +QHE DHL G L+ ++ + T+ + Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAKFGFTEVL 167 >gi|153855354|ref|ZP_01996503.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814] gi|149752174|gb|EDM62105.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814] Length = 157 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 52/147 (35%), Positives = 84/147 (57%), Gaps = 6/147 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F D +L + + + K+ LI++ML+ MY G+GLAA Q+G+L R+VV Sbjct: 1 MALRTIREFGDEVLNKECKEVTKMTLRTKVLINDMLDTMYEAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP I+ S + +EGCLS+P V R + V+ ++ + + Sbjct: 61 IDIGE-----GPIVLINPVILETSGE-QTGEEGCLSLPGKAGIVTRPNYAKVKALNEDME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 I+ +GLLA HE+DHL+G L+ Sbjct: 115 EVILEGEGLLARAFCHEIDHLDGKLYT 141 >gi|42782959|ref|NP_980206.1| peptide deformylase [Bacillus cereus ATCC 10987] gi|49478423|ref|YP_037928.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141621|ref|YP_085208.1| peptide deformylase [Bacillus cereus E33L] gi|196035868|ref|ZP_03103270.1| peptide deformylase [Bacillus cereus W] gi|196038865|ref|ZP_03106173.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|206976769|ref|ZP_03237673.1| peptide deformylase [Bacillus cereus H3081.97] gi|217961287|ref|YP_002339855.1| peptide deformylase [Bacillus cereus AH187] gi|222097312|ref|YP_002531369.1| peptide deformylase [Bacillus cereus Q1] gi|225865848|ref|YP_002751226.1| peptide deformylase [Bacillus cereus 03BB102] gi|228916504|ref|ZP_04080070.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928915|ref|ZP_04091947.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935181|ref|ZP_04098008.1| Peptide deformylase 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947586|ref|ZP_04109876.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987010|ref|ZP_04147136.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092910|ref|ZP_04224044.1| Peptide deformylase 1 [Bacillus cereus Rock3-42] gi|229123381|ref|ZP_04252585.1| Peptide deformylase 1 [Bacillus cereus 95/8201] gi|229140513|ref|ZP_04269068.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26] gi|229157443|ref|ZP_04285521.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342] gi|229174533|ref|ZP_04302065.1| Peptide deformylase 1 [Bacillus cereus MM3] gi|229197978|ref|ZP_04324692.1| Peptide deformylase 1 [Bacillus cereus m1293] gi|254721399|ref|ZP_05183188.1| peptide deformylase [Bacillus anthracis str. A1055] gi|301055358|ref|YP_003793569.1| peptide deformylase [Bacillus anthracis CI] gi|42738886|gb|AAS42814.1| polypeptide deformylase [Bacillus cereus ATCC 10987] gi|49329979|gb|AAT60625.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975090|gb|AAU16640.1| peptide deformylase [Bacillus cereus E33L] gi|195991517|gb|EDX55483.1| peptide deformylase [Bacillus cereus W] gi|196030588|gb|EDX69187.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|206745079|gb|EDZ56482.1| peptide deformylase [Bacillus cereus H3081.97] gi|217064571|gb|ACJ78821.1| peptide deformylase [Bacillus cereus AH187] gi|221241370|gb|ACM14080.1| peptide deformylase [Bacillus cereus Q1] gi|225786088|gb|ACO26305.1| peptide deformylase [Bacillus cereus 03BB102] gi|228585457|gb|EEK43561.1| Peptide deformylase 1 [Bacillus cereus m1293] gi|228609093|gb|EEK66383.1| Peptide deformylase 1 [Bacillus cereus MM3] gi|228626170|gb|EEK82919.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342] gi|228643074|gb|EEK99350.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26] gi|228660157|gb|EEL15793.1| Peptide deformylase 1 [Bacillus cereus 95/8201] gi|228690532|gb|EEL44315.1| Peptide deformylase 1 [Bacillus cereus Rock3-42] gi|228772788|gb|EEM21228.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812106|gb|EEM58437.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824546|gb|EEM70351.1| Peptide deformylase 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830722|gb|EEM76327.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843083|gb|EEM88165.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377527|gb|ADK06431.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI] gi|324327765|gb|ADY23025.1| peptide deformylase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 156 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|319442115|ref|ZP_07991271.1| peptide deformylase [Corynebacterium variabile DSM 44702] Length = 166 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + +F DP+LR V+ I+ + + L+++M E M + G+GLAA Q+GV R+ Sbjct: 1 MTALDIRLFGDPVLRTVAENIDDPTDPTLRTLVEDMYETMDAAGGVGLAANQVGVTRRVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D +NP + +EGCLS+PD DV R+A + + + + Sbjct: 61 VYDCDGDRG-----HIVNPVWEAVGAETQTGREGCLSVPDAGGDVTRAATVHLTGVTVDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + GL+A C+QHE DHL+G+++ + R + Sbjct: 116 EEVDREVTGLMARCVQHETDHLDGVMYFQRMESGTRREVM 155 >gi|257095171|ref|YP_003168812.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047695|gb|ACV36883.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 177 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ DP L R + P+E+ + LI +M E M DG GLAA QIGV RLV+ Sbjct: 1 MIRPVLRMGDPRLARKAAPVEQFATPALHALIADMEETMRHLDGAGLAAPQIGVGLRLVI 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INP + S EGCLS+P R V R + + Sbjct: 61 FGVDRNPRYPEAEPVPRTVLINPVLFPLSSATEEAWEGCLSVPGLRGWVPRWSRLRYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + G A +QHE DHL+GIL+ + + R +++ Sbjct: 121 DARGRPIDRSVAGFHARVVQHECDHLDGILYPMRIRDMSRFGFVEEL 167 >gi|302346308|ref|YP_003814606.1| peptide deformylase [Prevotella melaninogenica ATCC 25845] gi|302150701|gb|ADK96962.1| peptide deformylase [Prevotella melaninogenica ATCC 25845] Length = 186 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VV+ Sbjct: 1 MVLPIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVV 60 Query: 62 DLQD-----HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL ++ FIN I+ + D + +EGCLS+P V R+ + V++ Sbjct: 61 DLDVLSDTFPEYKDYRHAFINGHILEYDDSETETLEEGCLSLPGVHESVTRAKRVYVKWY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + DG LA +QHE DHL G +F D LS ++ MIT K+ L+Q + Sbjct: 121 DENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMITSKLKALLQGK 174 >gi|307109178|gb|EFN57416.1| hypothetical protein CHLNCDRAFT_17300 [Chlorella variabilis] Length = 169 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 83/148 (56%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PDP LR + I + + L + M EVMY DG+GLAA Q+GV RL+V + Sbjct: 13 VLRYPDPRLRAPNARIGAFDDSLRRLAEEMFEVMYEDDGVGLAAPQVGVNVRLMVFNEAG 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +V +NP+II ++++EGCLS P+ ADV+R + + V+ D + + + Sbjct: 73 EKGAGDEIVLVNPQIINQGKARNMFEEGCLSFPNIYADVERPSKVKVKAQDLSGKKFTVS 132 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153 G A QHE DHL+G LF D ++ Sbjct: 133 LIGFPARIFQHEYDHLDGRLFHDRMAPE 160 >gi|300813955|ref|ZP_07094254.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511929|gb|EFK39130.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 166 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 2/155 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+ S+ +E N + L+D+M E M S DG+GLAA Q+G+L RL+V Sbjct: 1 MAIRNIRTDEDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +D ++ INP I T + V +EGCLSIP + DVKR+ I V Y + + Sbjct: 61 VDDRD-EENQHRFYLINPVI-TRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + I + LA +QHE+DHL+GIL+ D ++ R Sbjct: 119 EEKINCEDFLARIIQHEIDHLDGILYTDRAEKMYR 153 >gi|257056762|ref|YP_003134594.1| peptide deformylase [Saccharomonospora viridis DSM 43017] gi|256586634|gb|ACU97767.1| peptide deformylase [Saccharomonospora viridis DSM 43017] Length = 166 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV + L F DP+L+ + P+ + I L+D++L+ + GLAA QIGV R Sbjct: 1 MVMRDLRYFGDPVLKSPADPVTTFDDSIRALVDDLLDTVNLPGRAGLAAPQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP+++ S++ EGCLS+P R+ TV+ +D + Sbjct: 61 YNVDGSIGY-----VLNPELVELSEEKHEVMEGCLSLPGLSFTTVRAQRATVKGVDLRNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + GLLA CLQHE+DHL+G+L+ID L +R ++ Sbjct: 116 PVTVSGSGLLAQCLQHEVDHLDGLLYIDRLEPQQRKQALREAR 158 >gi|257457589|ref|ZP_05622756.1| peptide deformylase [Treponema vincentii ATCC 35580] gi|257444975|gb|EEV20051.1| peptide deformylase [Treponema vincentii ATCC 35580] Length = 173 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 96/168 (57%), Gaps = 7/168 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ + LR+ S+P+E I+ + LI M M +GIGLAA QIG RL ++ + D Sbjct: 3 VLYLGEETLRQPSKPVEHIDEALHELIREMFITMDEDNGIGLAAPQIGKNVRLFIVKIDD 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R VFINP I+ S+ Y+EGCLSIP ADV R +TV+Y D N + + I Sbjct: 63 GIER----VFINPLIVGTSEKQCSYEEGCLSIPKMFADVVRPEAVTVQYQDMNGRRRTIE 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM---SKLVQLRD 170 A GLLA +QHE DHL G+LFID LS +RD + K + + R+ Sbjct: 119 ATGLLARVIQHEYDHLEGVLFIDRLSEKERDSLVAKFTQQQERKKQRE 166 >gi|119510121|ref|ZP_01629260.1| peptide deformylase [Nodularia spumigena CCY9414] gi|119465182|gb|EAW46080.1| peptide deformylase [Nodularia spumigena CCY9414] Length = 187 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 61/143 (42%), Positives = 88/143 (61%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I K++ +I L ML+ MYS+DGIGLAA Q+G+ +L+VID + Sbjct: 22 LGDRVLRQDAKRIAKVDDEIRQLAREMLQTMYSSDGIGLAAPQVGIHKQLIVIDCEPDNP 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+V INP I S + V QEGCLSIP DVKR + + Y D + + + A Sbjct: 82 DHPPLVLINPTIKQMSKEVCVAQEGCLSIPKVYLDVKRPEAVEIAYKDEYGRPKTLKATD 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA C+QHE+DHL G++F+D + Sbjct: 142 LLARCIQHEMDHLKGVVFVDRVE 164 >gi|116328151|ref|YP_797871.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331396|ref|YP_801114.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280858|sp|Q04RW4|DEF_LEPBJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122284057|sp|Q051Q7|DEF_LEPBL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116120895|gb|ABJ78938.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125085|gb|ABJ76356.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 178 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 8/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ D ILR+VS P+ + + LI +M + M +G+GLAA QIG+L + Sbjct: 1 MSVRKILRMGDSILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQ 60 Query: 58 LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +VV+ +D+ + V +NP I + D S + EGCLS+P R V+R I + Sbjct: 61 IVVVGSEDNERYPDTPNVPERVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKIRM 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++MD DG A QHE DHL+GIL++D L K Sbjct: 121 QWMDEKGDRFDETIDGYKAVVYQHECDHLSGILYVDRLKDTK 162 >gi|282882057|ref|ZP_06290698.1| peptide deformylase [Peptoniphilus lacrimalis 315-B] gi|281298087|gb|EFA90542.1| peptide deformylase [Peptoniphilus lacrimalis 315-B] Length = 166 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 2/155 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+ S+ +E N + L+D+M E M S DG+GLAA Q+G+L RL+V Sbjct: 1 MAIRNIRTDEDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +D ++ INP I T + V +EGCLSIP + DVKR+ I V Y + + Sbjct: 61 VDDRD-EENQHRFYLINPVI-TRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + I LA +QHE+DHL+GIL+ D ++ R Sbjct: 119 EEKINCKDFLARIIQHEIDHLDGILYTDRAEKMYR 153 >gi|57237196|ref|YP_178208.1| peptide deformylase [Campylobacter jejuni RM1221] gi|86149710|ref|ZP_01067940.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153727|ref|ZP_01071930.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597153|ref|ZP_01100388.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25] gi|148926356|ref|ZP_01810040.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486] gi|153951420|ref|YP_001397439.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97] gi|157414500|ref|YP_001481756.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81116] gi|205356562|ref|ZP_03223325.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421] gi|218561870|ref|YP_002343649.1| peptide deformylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|17432957|sp|Q9PIT8|DEF_CAMJE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|57166000|gb|AAW34779.1| peptide deformylase [Campylobacter jejuni RM1221] gi|85839978|gb|EAQ57237.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6] gi|85842688|gb|EAQ59900.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190214|gb|EAQ94188.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25] gi|112359576|emb|CAL34360.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844748|gb|EDK21853.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486] gi|152938866|gb|ABS43607.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97] gi|157385464|gb|ABV51779.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni 81116] gi|205345567|gb|EDZ32207.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421] gi|284925483|gb|ADC27835.1| peptide deformylase [Campylobacter jejuni subsp. jejuni IA3902] gi|307747142|gb|ADN90412.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni M1] gi|315057628|gb|ADT71957.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni S3] gi|315928123|gb|EFV07441.1| peptide deformylase [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930199|gb|EFV09314.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 305] Length = 175 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 96/158 (60%), Gaps = 3/158 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV-- 59 + + ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R++ Sbjct: 1 MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60 Query: 60 -VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D D +++ + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 61 NIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158 >gi|56698050|ref|YP_168421.1| peptide deformylase [Ruegeria pomeroyi DSS-3] gi|56679787|gb|AAV96453.1| peptide deformylase [Ruegeria pomeroyi DSS-3] Length = 165 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 2/163 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L P+E I D +LI +M + MY+ G GLAA Q+GV+ R V Sbjct: 1 MSVLPILTWPDARLSWRCDPVEGIVPD--DLIRDMFDTMYAAKGRGLAAPQVGVMQRFFV 58 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +PM INP I+ +E CLSIP V R +TV++ Sbjct: 59 MDVGWKEGPPSPMAMINPVIMAAERVPVEMEEVCLSIPGLSVPVTRPKAVTVQWTAPEGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + DG A C+QHE DHLNG++ +DHL R + Sbjct: 119 IHMADFDGFEARCIQHEFDHLNGVVTLDHLDPRARAAMLSAYE 161 >gi|121612384|ref|YP_999910.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176] gi|167004870|ref|ZP_02270628.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176] gi|87250043|gb|EAQ73001.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176] Length = 175 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 98/158 (62%), Gaps = 3/158 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R++++ Sbjct: 1 MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60 Query: 62 DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D +++ + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 61 NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158 >gi|229162803|ref|ZP_04290760.1| Peptide deformylase 1 [Bacillus cereus R309803] gi|228620685|gb|EEK77554.1| Peptide deformylase 1 [Bacillus cereus R309803] Length = 156 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTGKIE---LINPAILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|225418638|ref|ZP_03761827.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme DSM 15981] gi|225041834|gb|EEG52080.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme DSM 15981] Length = 165 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+ +P++++ LI++M E MY +G+GLAA Q+G+L +LVV Sbjct: 3 MAIRQIRTIGDEILRKQCKPVKEMTPRTAELIEDMFETMYEANGVGLAAPQVGILRQLVV 62 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D N V INP+I+ EGCLS+P V R + V+ ++ + Sbjct: 63 IDVDD----GNQYVLINPEILETEGS-QTGSEGCLSVPGKSGTVTRPMHVKVKALNEKLE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + DGLLA + HE+ HL G L++D Sbjct: 118 PYELEGDGLLARAICHEIAHLRGELYVD 145 >gi|196047434|ref|ZP_03114646.1| peptide deformylase [Bacillus cereus 03BB108] gi|229186107|ref|ZP_04313276.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1] gi|196021742|gb|EDX60437.1| peptide deformylase [Bacillus cereus 03BB108] gi|228597283|gb|EEK54934.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1] Length = 156 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVRHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|124386084|ref|YP_001029186.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|126448140|ref|YP_001080884.1| peptide deformylase [Burkholderia mallei NCTC 10247] gi|254358101|ref|ZP_04974374.1| peptide deformylase [Burkholderia mallei 2002721280] gi|124294104|gb|ABN03373.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|126241010|gb|ABO04103.1| peptide deformylase [Burkholderia mallei NCTC 10247] gi|148027228|gb|EDK85249.1| peptide deformylase [Burkholderia mallei 2002721280] Length = 177 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 6/163 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E N ++ L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP I D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSLPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 D A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGF 163 >gi|296119004|ref|ZP_06837577.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] gi|295968102|gb|EFG81354.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] Length = 202 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 8/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +VI DP+L + P+ + + ++ LI +M E M + G+GLAA Q+G+ RL Sbjct: 7 MTIRAIVIHGDPVLHNPTEPVTEAIDSPELQTLIADMCETMAAAHGVGLAANQVGIAKRL 66 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITV 112 V D D + INP + T D EGCLS+P R+ + V Sbjct: 67 FVYDCPDDDGHMHKGCIINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWAKV 126 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ + + G A CLQHE+ HL+GI++ D L + K + Sbjct: 127 TGLNEKGEDIEVEGTGFFARCLQHEVGHLDGIVYTDTLIGRNKRAAKKTIKA 178 >gi|75765204|pdb|1SZZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765205|pdb|1SZZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765206|pdb|1SZZ|C Chain C, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765207|pdb|1SZZ|D Chain D, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765208|pdb|1SZZ|E Chain E, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765209|pdb|1SZZ|F Chain F, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765210|pdb|1SZZ|G Chain G, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765211|pdb|1SZZ|H Chain H, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin Length = 177 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 8/160 (5%) Query: 3 KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ DPILR++S P+ + + LI +M M +G+GLAA QIG+L ++V Sbjct: 2 VRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFTTMRHAEGVGLAAPQIGILKQIV 61 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 V+ +D+ + +NP I + D S + EGCLS+P R V+R I +++ Sbjct: 62 VVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQW 121 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 MD DG A QHE DHL GIL++D L K Sbjct: 122 MDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161 >gi|125973086|ref|YP_001036996.1| peptide deformylase [Clostridium thermocellum ATCC 27405] gi|256004589|ref|ZP_05429567.1| peptide deformylase [Clostridium thermocellum DSM 2360] gi|281417281|ref|ZP_06248301.1| peptide deformylase [Clostridium thermocellum JW20] gi|158513246|sp|A3DCX4|DEF_CLOTH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|125713311|gb|ABN51803.1| peptide deformylase [Clostridium thermocellum ATCC 27405] gi|255991461|gb|EEU01565.1| peptide deformylase [Clostridium thermocellum DSM 2360] gi|281408683|gb|EFB38941.1| peptide deformylase [Clostridium thermocellum JW20] gi|316940693|gb|ADU74727.1| peptide deformylase [Clostridium thermocellum DSM 1313] Length = 170 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 90/153 (58%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+VS+ ++ I+ I L+D+M E MY+ +G+GLAA Q+GVL R+VV Sbjct: 1 MAVRFIREDGDEILRKVSKKVDVIDERIKTLLDDMAETMYAANGVGLAAPQVGVLKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D M INP+I+ + + EGCLSIP +VKR A + V ++ + Sbjct: 61 IDVGD-----GLMELINPEIVEQEGE-QIDIEGCLSIPGVAGEVKRPARVVVEALNREGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + LLA L HE+DHL+GILF D + R Sbjct: 115 KITVEGKELLAVALCHEIDHLDGILFTDKVIRF 147 >gi|295676828|ref|YP_003605352.1| peptide deformylase [Burkholderia sp. CCGE1002] gi|295436671|gb|ADG15841.1| peptide deformylase [Burkholderia sp. CCGE1002] Length = 177 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L R++ P++ + ++ L+++M E M++ +G GLAA QIGV ++V+ Sbjct: 1 MIHDILKMGDPRLLRIAEPVDHFDTPELHRLVEDMFETMHAANGAGLAAPQIGVNLQVVI 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGSNERYPDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D A+G A +QHE DHL G L+ ++ + T+ Sbjct: 121 DQFGNPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSKFGFTE 165 >gi|221194831|ref|ZP_03567888.1| peptide deformylase [Atopobium rimae ATCC 49626] gi|221185735|gb|EEE18125.1| peptide deformylase [Atopobium rimae ATCC 49626] Length = 183 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 93/163 (57%), Gaps = 1/163 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V++PD L I +I +I ++ ML+ MY+TDG+GLAA QIG+L R+VVID+ Sbjct: 6 EIVLWPDERLTDTCEEISEITDEIRDIAKRMLQDMYATDGVGLAAPQIGILKRMVVIDVD 65 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +KNP V INP++IT + Y EGCLS P V R + + V + + Sbjct: 66 YPDGQKNPFVLINPEVITADGEPRTYNEGCLSFPGITVPVTRPSHVVVHAQNLDGDLMQY 125 Query: 125 YADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A+G L A CLQHE+DH+NGI DHL R + ++ + + Sbjct: 126 EAEGDLFAVCLQHEIDHINGITMPDHLGPTARMEVLQRYHEAL 168 >gi|332876814|ref|ZP_08444571.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685240|gb|EGJ58080.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 193 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 15/182 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+ + + +L+ ++ + ++ LI NM E M +G GLAA Q+G RL V Sbjct: 1 MKLPIFAYGNNVLKVKAQAVASDFPNLHELIANMWETMEKANGCGLAAPQVGKSLRLFVA 60 Query: 62 DLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 D Q + FINP+I S++ EGCLS+P V R Sbjct: 61 DSQLLYEAMDERDKIAYFEKGDTGIRRAFINPQIKNLSEEQWEEAEGCLSLPFLSGKVAR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 S + + Y + + G+ A + HE DHL GIL+ID + L + ++ K+ KL+ Sbjct: 121 SWSVELSYQNEQFETITETFSGMTARVILHEYDHLEGILYIDRVKPLAKKLMQSKLQKLL 180 Query: 167 QL 168 + Sbjct: 181 KG 182 >gi|229031497|ref|ZP_04187497.1| Peptide deformylase [Bacillus cereus AH1271] gi|228729786|gb|EEL80766.1| Peptide deformylase [Bacillus cereus AH1271] Length = 156 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDIDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLQGVLFTSKVTR 148 >gi|224419234|ref|ZP_03657240.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|253826952|ref|ZP_04869837.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|313142736|ref|ZP_07804929.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|253510358|gb|EES89017.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|313131767|gb|EFR49384.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] Length = 168 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 105/167 (62%), Gaps = 4/167 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ +P+PILR++S+PIE N + L+D+M EVM +G+G++A+Q+ R ++I L Sbjct: 3 EVITYPNPILRQISQPIEVFNESLHELLDSMYEVMLQKNGVGISAIQVAKPIRALLICLP 62 Query: 65 DHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D H+++ + INP+I+ + ++ EGCLS+P++ +VKR++ + V Y D Sbjct: 63 DEEGNQHKEDLLEIINPQILEKDGEI-IFNEGCLSVPEFYEEVKRASSLKVAYQDRYGNP 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + A LA LQHE+DHLNGILFID LS LKR K++ + + Sbjct: 122 KEMEAKDYLAVALQHEIDHLNGILFIDKLSILKRKKFEKELKQKRKG 168 >gi|94310371|ref|YP_583581.1| peptide deformylase [Cupriavidus metallidurans CH34] gi|93354223|gb|ABF08312.1| polypeptide or peptide deformylase [Cupriavidus metallidurans CH34] Length = 177 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L + +RP+ + N ++ LID+M + M +G GLAA QIGV ++V+ Sbjct: 1 MIRDILKMGDARLLQQARPVTQFNTPELRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP + SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNPRYPDAPTVPKTVLINPSLEPLSDEMDDGWEGCLSVPGLRGVVPRYTRLKYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D A+ A +QHE DHL G+L+ + R T+ Sbjct: 121 DMMGNRIERVAEDFHARVVQHECDHLIGVLYPMRIKDFTRFGFTE 165 >gi|311029970|ref|ZP_07708060.1| peptide deformylase [Bacillus sp. m3-13] Length = 159 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P P+L + + + ++ L+ NM + M DG+GLAA QIG+ R+ + Sbjct: 1 MTILDIVKYPAPVLEQNCEAVTVFDKRLIRLLSNMYDTMLEADGVGLAAPQIGIAKRIAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP+I+ + V EGCLS PD +VKR+ ++ VR + + Sbjct: 61 VDIDDKHGKIE---LINPEIVDEEGE-QVGPEGCLSFPDLYGEVKRADYVKVRAQNRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA +QHE+DHLNG+LF + Sbjct: 117 WYELEARGFLARAIQHEIDHLNGVLFTSKV 146 >gi|46199964|ref|YP_005631.1| polypeptide deformylase, fms protein-like protein [Thermus thermophilus HB27] gi|55980290|ref|YP_143587.1| peptide deformylase [Thermus thermophilus HB8] gi|1169265|sp|P43522|DEF_THETH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81678630|sp|Q5SLH2|DEF_THET8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81699227|sp|Q72H33|DEF_THET2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|602914|emb|CAA55695.1| N-formylmethionylaminoacyl-tRNA deformylase [Thermus thermophilus] gi|46197591|gb|AAS82004.1| polypeptide deformylase, fms protein-like protein [Thermus thermophilus HB27] gi|55771703|dbj|BAD70144.1| polypeptide deformylase [Thermus thermophilus HB8] Length = 192 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 14/171 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60 + P+ ++ DP+LRR +RP+E S I L ++MLE M+ G+GLAA QIG+ RL V Sbjct: 1 MVYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVA 59 Query: 61 --IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAF 109 + + P+ V NP I T+ + EGCLS+P Y +V R+ Sbjct: 60 VEYADEPEGEEERPLRELVRRVYVVANPVI-TYREGLVEGTEGCLSLPGLYSEEVPRAER 118 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I V Y D + +++ +G +A QHE+DHL+GILF + L + KR+ + Sbjct: 119 IRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLE 169 >gi|256392284|ref|YP_003113848.1| peptide deformylase [Catenulispora acidiphila DSM 44928] gi|256358510|gb|ACU72007.1| peptide deformylase [Catenulispora acidiphila DSM 44928] Length = 188 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 6/162 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +F DP+L + P+ + ++ L+ ++ E M G GLAA QIGV R+ Sbjct: 8 TVQAIRLFGDPVLTTPATPVVDFDKELRTLVKDLTETMLDAPGSGLAAPQIGVGLRVFTW 67 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + +NP + SD+ EGCLSIPD KR+ + + + + Sbjct: 68 NVDNELG-----HLVNPTLD-LSDEEQDGDEGCLSIPDLAFPCKRALRVVAKGWTMHGEP 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +LA C+QHE DHL+G+LFID L R R + + Sbjct: 122 VEVEGSEMLARCIQHETDHLDGVLFIDRLDREWRKKAMRAIR 163 >gi|157964561|ref|YP_001499385.1| polypeptide deformylase [Rickettsia massiliae MTU5] gi|157844337|gb|ABV84838.1| Polypeptide deformylase [Rickettsia massiliae MTU5] Length = 189 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 16 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 75 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 76 N-NKSSPIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 134 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG +F+D+LS+LKRD + KKM K ++L Sbjct: 135 AEGFLATVIQHEIDYLNGKIFLDYLSKLKRDTLLKKMLKHIKL 177 >gi|39998545|ref|NP_954496.1| polypeptide deformylase [Geobacter sulfurreducens PCA] gi|39985492|gb|AAR36846.1| polypeptide deformylase [Geobacter sulfurreducens PCA] gi|298507488|gb|ADI86211.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens KN400] Length = 169 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 104/170 (61%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + ++ +P P+L++V + I+ I LID+++E M G +G+AA QIGV R+ Sbjct: 1 MPAQTILQYPHPVLKKVCHTVTAIDEAIRGLIDDLIETMREGPGSVGVAAPQIGVTLRVC 60 Query: 60 VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 VID+ H K+ ++ +NP+I+ S + +V +EGC+S+PDY DV+RS + VR++ Sbjct: 61 VIDVSGSRHGKDNNHGLLLMVNPEIVDRSGN-AVMREGCMSVPDYTGDVERSTEVRVRFL 119 Query: 116 D-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + I A G A +QHE+DHL+GILF+D + +K + +K K Sbjct: 120 DGADGSEREITASGFEAVAIQHEMDHLDGILFLDRIVSIKTGLFRRKNYK 169 >gi|194334376|ref|YP_002016236.1| peptide deformylase [Prosthecochloris aestuarii DSM 271] gi|238693348|sp|B4S9B9|DEF_PROA2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194312194|gb|ACF46589.1| peptide deformylase [Prosthecochloris aestuarii DSM 271] Length = 186 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 103/170 (60%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ D +LRR ++P++ I++ LI NM+E M + GIGLAA QIG+ RL+++ Sbjct: 1 MILPITIYSDEVLRRKAKPLKGIDTSHEELIGNMIESMRNASGIGLAAPQIGLSMRLLIV 60 Query: 62 DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DL +N PMV INP I+ ++ +EGCLSIPD ADV R + I ++Y + + Sbjct: 61 DLSPVQGYENAEPMVVINPHILAVKG-YNAMEEGCLSIPDIHADVVRPSSIQLKYRNEHF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ++ L+A LQHE+DHL+G LF+D L R R + K + + + Sbjct: 120 EERVDEFSALMARVLQHEIDHLDGTLFVDKLQRRDRRKVQKSLEDIAAGK 169 >gi|53719772|ref|YP_108758.1| peptide deformylase [Burkholderia pseudomallei K96243] gi|53723743|ref|YP_103199.1| peptide deformylase [Burkholderia mallei ATCC 23344] gi|76809016|ref|YP_333979.1| peptide deformylase [Burkholderia pseudomallei 1710b] gi|121601445|ref|YP_993377.1| peptide deformylase [Burkholderia mallei SAVP1] gi|126440852|ref|YP_001059473.1| peptide deformylase [Burkholderia pseudomallei 668] gi|126452569|ref|YP_001066757.1| peptide deformylase [Burkholderia pseudomallei 1106a] gi|134277462|ref|ZP_01764177.1| peptide deformylase [Burkholderia pseudomallei 305] gi|167004075|ref|ZP_02269849.1| peptide deformylase [Burkholderia mallei PRL-20] gi|167720172|ref|ZP_02403408.1| peptide deformylase [Burkholderia pseudomallei DM98] gi|167739177|ref|ZP_02411951.1| peptide deformylase [Burkholderia pseudomallei 14] gi|167816388|ref|ZP_02448068.1| peptide deformylase [Burkholderia pseudomallei 91] gi|167824767|ref|ZP_02456238.1| peptide deformylase [Burkholderia pseudomallei 9] gi|167846298|ref|ZP_02471806.1| peptide deformylase [Burkholderia pseudomallei B7210] gi|167894880|ref|ZP_02482282.1| peptide deformylase [Burkholderia pseudomallei 7894] gi|167903269|ref|ZP_02490474.1| peptide deformylase [Burkholderia pseudomallei NCTC 13177] gi|167911509|ref|ZP_02498600.1| peptide deformylase [Burkholderia pseudomallei 112] gi|167919519|ref|ZP_02506610.1| peptide deformylase [Burkholderia pseudomallei BCC215] gi|217421605|ref|ZP_03453109.1| peptide deformylase [Burkholderia pseudomallei 576] gi|237812813|ref|YP_002897264.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|238563756|ref|ZP_00438343.2| peptide deformylase [Burkholderia mallei GB8 horse 4] gi|242316254|ref|ZP_04815270.1| peptide deformylase [Burkholderia pseudomallei 1106b] gi|254178715|ref|ZP_04885370.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|254179317|ref|ZP_04885916.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|254189297|ref|ZP_04895808.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|254197856|ref|ZP_04904278.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|254200152|ref|ZP_04906518.1| peptide deformylase [Burkholderia mallei FMH] gi|254206490|ref|ZP_04912842.1| peptide deformylase [Burkholderia mallei JHU] gi|254258903|ref|ZP_04949957.1| peptide deformylase [Burkholderia pseudomallei 1710a] gi|254297203|ref|ZP_04964656.1| polypeptide deformylase [Burkholderia pseudomallei 406e] gi|52210186|emb|CAH36165.1| putative deformylase [Burkholderia pseudomallei K96243] gi|52427166|gb|AAU47759.1| polypeptide deformylase [Burkholderia mallei ATCC 23344] gi|76578469|gb|ABA47944.1| polypeptide deformylase [Burkholderia pseudomallei 1710b] gi|121230255|gb|ABM52773.1| polypeptide deformylase [Burkholderia mallei SAVP1] gi|126220345|gb|ABN83851.1| peptide deformylase [Burkholderia pseudomallei 668] gi|126226211|gb|ABN89751.1| peptide deformylase [Burkholderia pseudomallei 1106a] gi|134251112|gb|EBA51191.1| peptide deformylase [Burkholderia pseudomallei 305] gi|147749748|gb|EDK56822.1| peptide deformylase [Burkholderia mallei FMH] gi|147753933|gb|EDK60998.1| peptide deformylase [Burkholderia mallei JHU] gi|157806966|gb|EDO84136.1| polypeptide deformylase [Burkholderia pseudomallei 406e] gi|157936976|gb|EDO92646.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|160699754|gb|EDP89724.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|169654597|gb|EDS87290.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|184209857|gb|EDU06900.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|217395347|gb|EEC35365.1| peptide deformylase [Burkholderia pseudomallei 576] gi|237504956|gb|ACQ97274.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|238520038|gb|EEP83502.1| peptide deformylase [Burkholderia mallei GB8 horse 4] gi|242139493|gb|EES25895.1| peptide deformylase [Burkholderia pseudomallei 1106b] gi|243060514|gb|EES42700.1| peptide deformylase [Burkholderia mallei PRL-20] gi|254217592|gb|EET06976.1| peptide deformylase [Burkholderia pseudomallei 1710a] Length = 177 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 6/163 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E N ++ L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP I D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 D A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGF 163 >gi|288802833|ref|ZP_06408270.1| peptide deformylase [Prevotella melaninogenica D18] gi|288334650|gb|EFC73088.1| peptide deformylase [Prevotella melaninogenica D18] Length = 186 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 93/174 (53%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VV+ Sbjct: 1 MVLPIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVV 60 Query: 62 DLQD-----HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL ++ FIN I+ + D + +EGCLS+P V R+ I V++ Sbjct: 61 DLDVLSDTFPEYKDYRHAFINGHILEYDDSETETLEEGCLSLPGIHESVTRAKRIYVKWY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + DG LA +QHE DHL G +F D LS ++ MI K+ L+Q + Sbjct: 121 DENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMINSKLKALLQGK 174 >gi|87303617|ref|ZP_01086396.1| Formylmethionine deformylase [Synechococcus sp. WH 5701] gi|87281841|gb|EAQ73805.1| Formylmethionine deformylase [Synechococcus sp. WH 5701] Length = 232 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 6/171 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ ++ DP LR+VSRP+ + +++ LI ++ + M + DG GLAA QI V R+V Sbjct: 10 MAERTVLRLGDPRLRQVSRPVTRFGTPELLALITDLRDTMAARDGAGLAAPQIAVPLRVV 69 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + A V INP+I EGCLS+P R V R I R Sbjct: 70 IFGITVNPRYPEAPPIPETVLINPEITPIDQACDSGWEGCLSVPGLRGQVSRWRRIHYRG 129 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D G A +QHE DHL+G+LF D L + T+++ Sbjct: 130 FDAEGHLIARSVAGFHARVVQHECDHLDGVLFPDRLEDTRALGFTEELEAW 180 >gi|307722030|ref|YP_003893170.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294] gi|306980123|gb|ADN10158.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294] Length = 174 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 61/171 (35%), Positives = 101/171 (59%), Gaps = 4/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K +V +PD LR+ S +++ ++ + L+D M +M +T+GIGLAA+Q+ R +++ Sbjct: 1 MKLNIVEYPDKTLRKKSCEVKEFDASLHKLLDAMNPLMINTNGIGLAAIQVAYPIRALIL 60 Query: 62 DLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D + P + INP + S + YQEGCLS+P + D+KR + + Y D Sbjct: 61 NVPDEDGEQPPENLLEIINPVMTHKSGET-TYQEGCLSVPQFYEDIKRYDNVVINYQDRY 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + ADGLLA +QHE+DHL GILFID LS +R K+ ++ + + Sbjct: 120 GNTKTLDADGLLAIAIQHEMDHLEGILFIDKLSYARRKKFEKEYKRMQKEK 170 >gi|302335855|ref|YP_003801062.1| peptide deformylase [Olsenella uli DSM 7084] gi|301319695|gb|ADK68182.1| peptide deformylase [Olsenella uli DSM 7084] Length = 180 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 93/164 (56%), Gaps = 1/164 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V PD LR PIEKI++ + L MLE MY+T+G+GLAA Q+G L +LVVI Sbjct: 3 AFEEIVTAPDERLRTECAPIEKIDNKVRLLAKRMLEDMYATEGVGLAAPQVGELVQLVVI 62 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ +++P V INP+++ D V EGCLS P V R + + V +D + Sbjct: 63 DVDYADGKRSPYVLINPRVVVADGDEVVGSEGCLSFPGITVQVSRPSHVVVEALDLDGDL 122 Query: 122 QIIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + LLA CLQHE+DHL+GI +DHLS +R + + Sbjct: 123 MRYEARNNLLAVCLQHEIDHLHGITMLDHLSPARRVAAMRDYQE 166 >gi|126733795|ref|ZP_01749542.1| formylmethionine deformylase [Roseobacter sp. CCS2] gi|126716661|gb|EBA13525.1| formylmethionine deformylase [Roseobacter sp. CCS2] Length = 166 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P V++P P LR + P+ I ++ + D M+ M + G+GLAA Q+GV L V Sbjct: 1 MTHRPFVMWPHPALRTAATPVAVITDEVRAIWDEMIVAMDTMPGVGLAAPQLGVEMALAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R + NP I+ S + V++EG ++P A V R +TVR+++ + Q Sbjct: 61 IDASE--ERGQAIRMANPTILHSSVEPRVHEEGSPNLPGVWAKVTRPRAVTVRFLNADGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 GL AT +QH++DHL+G +F DHL+R+KRDM+ KK +KL + Sbjct: 119 WDRQDFVGLWATSVQHQIDHLSGKMFFDHLTRVKRDMLIKKSAKLRRG 166 >gi|325529284|gb|EGD06233.1| peptide deformylase [Burkholderia sp. TJI49] Length = 177 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E+ + ++ ++ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGVGLQIII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPEAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A+G A +QHE DHL G L+ ++ R T+ + Sbjct: 121 DQFGAKLDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167 >gi|148240477|ref|YP_001225864.1| peptide deformylase [Synechococcus sp. WH 7803] gi|147849016|emb|CAK24567.1| Peptide deformylase [Synechococcus sp. WH 7803] Length = 201 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 90/151 (59%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + D +LR +R I K++ + +L +ML MY+ GIGLAA Q+GV +L+VI Sbjct: 29 APLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVHQQLLVI 88 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL P+V INP+I + S Y+EGCLSIP DV R + + V + D + Sbjct: 89 DLDPETASSPPLVLINPEITSASASLETYEEGCLSIPGVYLDVVRPSAVQVSFRDEMGRP 148 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 149 RTMKADGLMARCIQHEMDHLTGVLFVDRVTD 179 >gi|228992595|ref|ZP_04152522.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442] gi|228998643|ref|ZP_04158230.1| Peptide deformylase [Bacillus mycoides Rock3-17] gi|229006144|ref|ZP_04163831.1| Peptide deformylase [Bacillus mycoides Rock1-4] gi|228755097|gb|EEM04455.1| Peptide deformylase [Bacillus mycoides Rock1-4] gi|228761111|gb|EEM10070.1| Peptide deformylase [Bacillus mycoides Rock3-17] gi|228767229|gb|EEM15865.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442] Length = 158 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 4/162 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PD +L + + ++NL+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPDEVLETPCERVMNFDKKLVNLLKDMHETMLVADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTGKIE---LINPVILEKRGE-QVGPEGCLSFPGLYGEVERAEYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 ++ AD LA +QHE+DHL+G+LF ++R + ++M Sbjct: 117 IFLLEADDFLARAIQHEIDHLHGVLFTSKVTRYYEENELEEM 158 >gi|312898702|ref|ZP_07758092.1| peptide deformylase [Megasphaera micronuciformis F0359] gi|310620621|gb|EFQ04191.1| peptide deformylase [Megasphaera micronuciformis F0359] Length = 176 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+L++ + P++ I + L+D+M E MYS +G+GLAA Q+ ++VV Sbjct: 23 MSALRIVKDGAPVLKKTAAPVKTITKRVKRLLDDMAETMYSAEGVGLAAPQVNESLQIVV 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + INP+I+ S++ EGCLS+P DV R I V+ + + Sbjct: 83 LD-----DGNGLIELINPEILDVSEETEYGPEGCLSVPGIYGDVSRYTKIKVQAKNRFGK 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I +G LA QHE+DHL G LF + L++ Sbjct: 138 TVIYEPEGFLARIFQHEMDHLKGHLFTEKAVNLRK 172 >gi|228922621|ref|ZP_04085921.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837050|gb|EEM82391.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 156 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ + Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDVDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|118479089|ref|YP_896240.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam] gi|118418314|gb|ABK86733.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam] Length = 156 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVMNFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|115352107|ref|YP_773946.1| peptide deformylase [Burkholderia ambifaria AMMD] gi|115282095|gb|ABI87612.1| peptide deformylase [Burkholderia ambifaria AMMD] Length = 177 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V++P+ + + ++ ++ +M E M+ +G GLAA QIG+ +L++ Sbjct: 1 MIREILKMGDPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A+G A +QHE DHL G L+ ++ R T+ + Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167 >gi|307244489|ref|ZP_07526598.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678] gi|306492182|gb|EFM64226.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678] Length = 151 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +P+L + S+ + N + L+D+M + MY DG+GLAA Q+GVL R VV Sbjct: 1 MAIRNILKMGEPLLNKKSKQVVDFNDRLHTLLDDMADTMYKEDGVGLAAPQVGVLRRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INP I+ S + EGCLS+ DY +V R ++ V+ D + Sbjct: 61 VDIGE-----GLIELINPVIVETSGE-QTDLEGCLSVVDYIGEVTRPNYVKVKAQDRFGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + +G LA HE+DHL GILF++ + ++ Sbjct: 115 DIEVEGEGFLARAFCHEIDHLEGILFVERVEDTEK 149 >gi|160939813|ref|ZP_02087160.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC BAA-613] gi|158437247|gb|EDP15012.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC BAA-613] Length = 161 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +P++ +N M LI++M E MY +G GLAA Q+GVL ++V Sbjct: 1 MAVRQIRIMGDEILTKKCKPVKAMNDRTMELIEDMFETMYQANGCGLAAPQVGVLKQIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D N V INP+I T +D EGCLS+P V R ++ V+ ++ N + Sbjct: 61 IDVDD----GNQYVLINPEI-TATDGSQTGYEGCLSLPGKSGIVTRPNYVKVKALNENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA + HE HL G ++++ + Sbjct: 116 PYELEGEGLLARAICHECAHLEGQMYVELVE 146 >gi|256832092|ref|YP_003160819.1| peptide deformylase [Jonesia denitrificans DSM 20603] gi|256685623|gb|ACV08516.1| peptide deformylase [Jonesia denitrificans DSM 20603] Length = 215 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 13/171 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+VI DP+LR+ + + + + ++ L+ +M + M ++G+GLAA QIGV R+ V Sbjct: 1 MIHPIVIDGDPVLRQRAAEVTEFDDALVQLVADMYDTMRVSNGVGLAAPQIGVGQRIFVF 60 Query: 62 DLQDHAHRK-----NPMVFI--NPKIITFSDD------FSVYQEGCLSIPDYRADVKRSA 108 D D ++ NP + I P + EGCLS P + KR Sbjct: 61 DAPDEDEQRRGVVVNPSLMIVQRPPRFALKGEGKRPPKSLTDVEGCLSFPGPDFEAKRHY 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + V D + + +I +G A LQHE DHL+G+L++D L + Sbjct: 121 AVRVTGWDEHGEPVVIDGEGWFARVLQHEYDHLDGLLYVDRLKGRDKAEAR 171 >gi|221633590|ref|YP_002522816.1| peptide deformylase [Thermomicrobium roseum DSM 5159] gi|254767609|sp|B9L0C1|DEF_THERP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|221156095|gb|ACM05222.1| peptide deformylase [Thermomicrobium roseum DSM 5159] Length = 176 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 5/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ DP LR+ + I ++ ++ L ++ + + + G+GLAA QIGVL R++V Sbjct: 1 MAVRTIITEGDPRLRQKAIRIRVVDEEVRQLARDLWDTVRAARGLGLAAPQIGVLRRIIV 60 Query: 61 IDLQ-DHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + D+ +P V INP+I+ S V EGCLSIP + +V RS +TV+ +D Sbjct: 61 VAIPPDYVEEGDPGVELTLINPEIVRASG-RQVGLEGCLSIPGWYGEVPRSMHVTVKALD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + + GLLA LQHE+DHL GILF+D + Sbjct: 120 LDGREVRVKGSGLLARVLQHEIDHLEGILFVDRIED 155 >gi|78224736|ref|YP_386483.1| formylmethionine deformylase [Geobacter metallireducens GS-15] gi|78195991|gb|ABB33758.1| Formylmethionine deformylase [Geobacter metallireducens GS-15] Length = 168 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 63/166 (37%), Positives = 103/166 (62%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M +P++ +P P+L++VS + I+ +I LID++L+ M + G +G+AA QIG R+ Sbjct: 1 MPAQPILCYPHPVLKKVSHAVAVIDDEIRGLIDDLLDTMRAGPGSVGVAAPQIGATLRVC 60 Query: 60 VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ H K +V +NP+I+ + ++ +EGC+S+PDY DV+R+ ITVR+ Sbjct: 61 VVDVSGSRHGKENNHGVLVMVNPEIV-HREGAAIMREGCMSVPDYTGDVERATTITVRFR 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 D + I A G A +QHE+DHL+GILF+D + LK + +K Sbjct: 120 DGEGTEREISASGFEAVAIQHEMDHLDGILFLDRIVSLKTGLFRRK 165 >gi|68535326|ref|YP_250031.1| peptide deformylase [Corynebacterium jeikeium K411] gi|260578459|ref|ZP_05846373.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] gi|68262925|emb|CAI36413.1| polypeptide deformylase [Corynebacterium jeikeium K411] gi|258603481|gb|EEW16744.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] Length = 193 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P+VI DP+L + ++ D+ LI +M E + + +G+GLAA Q+GV R Sbjct: 1 MTIMPIVICGDPVLHNPTTKVDPSEIPDLAPLIADMYETLSAANGVGLAANQVGVNKRFF 60 Query: 60 VIDLQDHA-HRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V D D INP +I D +EGCLS+P Y R+ + V Sbjct: 61 VYDCPDTERGEMRRGCVINPVLETSEIPETMPDEEEDEEGCLSVPGYSFPTGRADWARVT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D N + + G A CLQHE+ HL+G L+ID L + K + Sbjct: 121 GLDENGEEVTVEGTGFFARCLQHEVGHLDGFLYIDTLIGRWKRKSKKAVKA 171 >gi|307729328|ref|YP_003906552.1| peptide deformylase [Burkholderia sp. CCGE1003] gi|307583863|gb|ADN57261.1| peptide deformylase [Burkholderia sp. CCGE1003] Length = 177 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L R++ P++ + ++ LI +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A+G A +QHE DHL G L+ ++ + T+ + Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAKFGFTEVL 167 >gi|168055848|ref|XP_001779935.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668649|gb|EDQ55252.1| predicted protein [Physcomitrella patens subsp. patens] Length = 202 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 10/176 (5%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++++PDP LR ++ I+ + + L++ ML+VMY TDG+GLAA Q+GV RL+V + Sbjct: 12 EVILYPDPRLRAKNKFIKVFDDKLQQLVNEMLDVMYKTDGVGLAAPQVGVNVRLMVYNPS 71 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP----------DYRADVKRSAFITVRY 114 V +NP+I+ + ++ EGCLS P A+V+R + + Sbjct: 72 GERGSGKEYVLVNPRIVKYGKSRDLFDEGCLSFPVLERGPNQSLTIEAEVERPKSVRIDA 131 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 D + I A QHE DHL GIL+ D ++ D I ++ KL +L + Sbjct: 132 QDIKGKKFSINLKDFQARIFQHEYDHLEGILYFDRMTPEVLDTIRPELEKLEKLYE 187 >gi|327200562|pdb|3M6Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41q Mutant In Complex With Actinonin Length = 193 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 89/163 (54%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PDPILR ++ I+ + ++ NL+D M +VMY TD IGL+A Q+G+ +L+V + Sbjct: 2 EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDQIGLSAPQVGLNVQLMVFNPA 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 62 GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A QHE DHL G+LF D ++ D I +++ L + Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 164 >gi|83719851|ref|YP_442547.1| peptide deformylase [Burkholderia thailandensis E264] gi|167581474|ref|ZP_02374348.1| peptide deformylase [Burkholderia thailandensis TXDOH] gi|167619583|ref|ZP_02388214.1| peptide deformylase [Burkholderia thailandensis Bt4] gi|257138756|ref|ZP_05587018.1| peptide deformylase [Burkholderia thailandensis E264] gi|83653676|gb|ABC37739.1| polypeptide deformylase [Burkholderia thailandensis E264] Length = 177 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E N ++ L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVESFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP + D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPSVEYLPPDMEDGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D A+G A +QHE DHL G L+ ++ + T Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGFT 164 >gi|283955632|ref|ZP_06373125.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336] gi|283792857|gb|EFC31633.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336] Length = 175 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR---L 58 + + ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R + Sbjct: 1 MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRALLV 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D D +++ + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 61 NIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158 >gi|198282740|ref|YP_002219061.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666795|ref|YP_002424934.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247261|gb|ACH82854.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519008|gb|ACK79594.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 167 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 95/164 (57%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M P++ +PD L+R + P+ + D+ + ID++ E MY+ G +G+AA Q+ R+V Sbjct: 1 MAVLPILTYPDSRLQRKADPVSVFDDDLHHFIDDLTETMYAGPGGVGIAAPQVDRAQRIV 60 Query: 60 VIDLQDHAHRK--NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++D++ MV INP++ + + V +EGC+S+PD+ +V R+ I V+ D Sbjct: 61 IVDVRPKLGDDCHGLMVLINPELAAW-EGMVVGREGCMSVPDFTGNVIRAERIQVQAQDV 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + +G A +QHE+DHL+G+LF+D L K D+ +K Sbjct: 120 LGRERSYECEGFEARAVQHEMDHLDGLLFLDRLVSRKVDLFRRK 163 >gi|186684172|ref|YP_001867368.1| peptide deformylase [Nostoc punctiforme PCC 73102] gi|186466624|gb|ACC82425.1| peptide deformylase [Nostoc punctiforme PCC 73102] Length = 187 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 61/143 (42%), Positives = 92/143 (64%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I K++ ++ ++ ML+ MYS DGIGLAA Q+G+ +L+VIDL+ Sbjct: 22 LGDRVLRQAAKRISKVDDELRQMVREMLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPENA 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+V INP I S D SV +EGCLSIP+ DVKR + + Y D + + + A+ Sbjct: 82 ANPPLVLINPTIKQVSRDISVAEEGCLSIPNVYLDVKRPEVVEIAYKDEYGRPRTLKAND 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LL C+QHE+DHLNG++F+D + Sbjct: 142 LLGRCIQHEMDHLNGVVFVDRVE 164 >gi|288958776|ref|YP_003449117.1| peptide deformylase 2 [Azospirillum sp. B510] gi|288911084|dbj|BAI72573.1| peptide deformylase 2 [Azospirillum sp. B510] Length = 190 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P+ +PILR++++PI + + I L +M+ M G+GLAA Q+ R++ Sbjct: 1 MPVLPIARMGNPILRQIAQPIADPTDPAIARLAADMIATMLDAPGVGLAAPQVSESCRII 60 Query: 60 VIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V + + V +NP I +DD ++ EGCLSIP R V R I R Sbjct: 61 VFRVPADRGEGEEVANTVLVNPVIEPLTDDMALGWEGCLSIPGLRGLVPRHTRIRYRGHG 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + A G A +QHE+DHL+G+L++D + L+ Sbjct: 121 LDGARIEREASGFHARVVQHEVDHLDGVLYLDRMDDLR 158 >gi|91204615|emb|CAJ70843.1| strongly similar to peptide deformylase [Candidatus Kuenenia stuttgartiensis] Length = 170 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 65/162 (40%), Positives = 95/162 (58%), Gaps = 3/162 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P P+LR+ ++P+ +IN+D+ + M+E+M GIGLAA Q+G RL VID+ Sbjct: 3 IVTYPAPVLRQKAKPLTEINADVYKKAEKMVELMRRVHGIGLAAPQVGWSVRLFVIDVVG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + N VFINP I+ + + S +EGCLS P V R+ I V + N Q + Sbjct: 63 NNVDDN--VFINPSIMEEAGETS-NEEGCLSFPGIMGKVIRTHKIKVCAYNLNGQKIEVV 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + LLA QHELDHLNG LFID +S R ++++ +L Q Sbjct: 120 LEDLLARAWQHELDHLNGCLFIDRMSPASRLAASQQLKELEQ 161 >gi|167837046|ref|ZP_02463929.1| peptide deformylase [Burkholderia thailandensis MSMB43] Length = 176 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E N ++ L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVETFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + V +NP + D EGCLS+P R V R + Sbjct: 61 FGFGNSERYPEAPPVPETVLVNPGVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160 >gi|319649622|ref|ZP_08003778.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] gi|317398784|gb|EFV79466.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] Length = 161 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 82/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V +P +L P++ + + L+++M + M DG+GLAA QIG+ ++ + Sbjct: 1 MAVKKIVSYPAEVLEAECEPVKVFDKKLGKLLNDMYDTMIEFDGVGLAAPQIGLSRQIAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D INP+I+ + + EGCLS P +V R ++ ++ D + Sbjct: 61 VDIDDEFGTIE---IINPEILETNGE-QTGPEGCLSFPGLYGEVTRPEYVKIKAQDRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + A+ LA + HE+DHL+G+LF ++R Sbjct: 117 YFTLEAEDFLARAILHEIDHLHGVLFTSKVTR 148 >gi|194336843|ref|YP_002018637.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1] gi|238693370|sp|B4SBG6|DEF_PELPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194309320|gb|ACF44020.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1] Length = 188 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ D ILR ++P++ ++S I LI +M E M + GIGLAA Q+G RL+V+ Sbjct: 1 MILPINIYSDDILRLKAKPLKGVDSAIEELIASMFESMRNASGIGLAAPQVGRSIRLLVL 60 Query: 62 DLQDHA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D+ + + PMV INP I++ + +EGCLS+P + V R A IT++Y D + Sbjct: 61 DVSCVSKCEHEKPMVVINPHILSVRG-HNDMEEGCLSVPGVQGYVVRPAAITLKYRDEHF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + G++A +QHE+DHL+G LF+D + + R I K+++ L Sbjct: 120 AERTGEFSGMVARVIQHEIDHLDGTLFVDRMEKRDRKKIQKELTALA 166 >gi|325284991|ref|YP_004260781.1| peptide deformylase [Cellulophaga lytica DSM 7489] gi|324320445|gb|ADY27910.1| Peptide deformylase [Cellulophaga lytica DSM 7489] Length = 196 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 12/159 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + DP+LR+ ++ I + + + L++NM E MY+ G+GLAA Q+G+ R+ ++ Sbjct: 1 MILPITAYGDPVLRKKAKDINQDHPKLKELLENMWETMYNASGVGLAAPQVGLPLRIFLV 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + ++ FIN KII + + + EGCLSIPD R DV R Sbjct: 61 DTTPFSDDEDLSAEEQKALNGFKKAFINAKIIEETGEEWAFNEGCLSIPDIREDVSRKEN 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 I + Y+D N + +GLLA +QHE DH+ GILF D Sbjct: 121 IKITYLDENFKEHTEEYNGLLARVIQHEYDHIEGILFTD 159 >gi|42527153|ref|NP_972251.1| polypeptide deformylase [Treponema denticola ATCC 35405] gi|41817577|gb|AAS12162.1| polypeptide deformylase [Treponema denticola ATCC 35405] gi|325474196|gb|EGC77384.1| polypeptide deformylase [Treponema denticola F0402] Length = 169 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 5/158 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ + LR VS+P+EKI+ +I +LID M + +GIGLAA Q+G RL ++ + + Sbjct: 3 VLYLGEETLREVSKPVEKIDENIKSLIDEMFVTVKKENGIGLAAPQVGENIRLFIVFINE 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 VFINP+II S + + +EGCLSIP +V R + + V++++ + + + I Sbjct: 63 Q-----KYVFINPEIIETSQEMCLMEEGCLSIPKVYDEVMRPSAVKVQFLNIDGKIKTIE 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 A GLLA +QHE DHLNGILFID LS K+ +K Sbjct: 118 ASGLLARVIQHENDHLNGILFIDRLSEEKKAEAIEKFE 155 >gi|312622713|ref|YP_004024326.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002] gi|312203180|gb|ADQ46507.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002] Length = 166 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + +NP+I + +V EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGA-----IELVNPEIEQVEGN-AVDVEGCLSVPNVWGEVERPQKVIVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+GLLA + HE+DHL+GILF+D + R Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147 >gi|212639617|ref|YP_002316137.1| peptide deformylase [Anoxybacillus flavithermus WK1] gi|212561097|gb|ACJ34152.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1] Length = 151 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 4/145 (2%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +P PIL V +P+ + ++ L+++M + M + DG+GLAA QIGV ++ ++D+ D Sbjct: 2 TYPAPILETVCQPVTVFDRKLIKLLNDMYDTMLAADGVGLAAPQIGVDQQIAIVDIGDRH 61 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R INP I+ + + + EGCLS P +VKR ++ VR + + I A Sbjct: 62 GRIE---LINPIIVAQNGE-QIGPEGCLSFPGLFGEVKRFQYVKVRAQNRRGRPFEIEAT 117 Query: 128 GLLATCLQHELDHLNGILFIDHLSR 152 G LA LQHE+DHL+GILF + R Sbjct: 118 GFLARALQHEIDHLHGILFTSKVIR 142 >gi|254438825|ref|ZP_05052319.1| peptide deformylase [Octadecabacter antarcticus 307] gi|198254271|gb|EDY78585.1| peptide deformylase [Octadecabacter antarcticus 307] Length = 164 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 85/159 (53%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV + + ++P +L + P + D+ LI+++ + MY G LAA QIGV R+ V Sbjct: 1 MVTRDIRLWPHAVLTQTCAPASLNDPDLDGLIEDLFDTMYHAKGRVLAAPQIGVTKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ ++P FINP+I + D E CLSIPD V R + +R+ + + Sbjct: 61 VDVTWKDGIRDPRAFINPQITETAGDTVFMDEQCLSIPDTPMPVARPEAVQLRWANRDGG 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + DG+LA C+QHELDHLNG + DH S R + Sbjct: 121 LETAPFDGILARCIQHELDHLNGTVIFDHQSPEVRAELE 159 >gi|302553425|ref|ZP_07305767.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302471043|gb|EFL34136.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 208 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 3/164 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + +L + R + + D+ LID+M MY DG GLAA Q+GV RL V D Sbjct: 26 VRRITEAGEEVLHKPCRDVTEFGPDLAALIDDMFLTMYIADGAGLAANQVGVDLRLFVYD 85 Query: 63 LQDHAHRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D ++ +NP + EGCLS+P +V R VR D + Sbjct: 86 CPDDDGVRHVGHVVNPVLEPLDASHRRLLDDSEGCLSVPGAVMNVPRPDRAVVRGYDRDG 145 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +I G A CL HE DH+NG +++D LS R ++M+ Sbjct: 146 EPLVIEGTGYFARCLAHETDHVNGQVYLDRLSGRDRKEALRQMA 189 >gi|1072950|pir||A55228 fms protein homolog - Thermus aquaticus (fragment) Length = 191 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 92/170 (54%), Gaps = 14/170 (8%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-- 60 P+ ++ DP+LRR +RP+E S I L ++MLE M+ G+GLAA QIG+ RL V Sbjct: 1 VYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAV 59 Query: 61 -IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFI 110 + + P+ V NP I T+ + EGCLS+P Y +V R+ I Sbjct: 60 EYADEPEGEEERPLRELVRRVYVVANPVI-TYREGLVEGTEGCLSLPGLYSEEVPRAERI 118 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 V Y D + +++ +G +A QHE+DHL+GILF + L + KR+ + Sbjct: 119 RVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLE 168 >gi|253702639|ref|YP_003023828.1| peptide deformylase [Geobacter sp. M21] gi|251777489|gb|ACT20070.1| peptide deformylase [Geobacter sp. M21] Length = 168 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 107/169 (63%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + +V +P+ IL+ + +E+I+ + L+D++++ M + G +G+A+ QIGV R+ Sbjct: 1 MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMQAGPGSVGVASPQIGVSLRVC 60 Query: 60 VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 VID+ + H K+ ++ INP+I+ S +V +EGC+S+PDY DV+RS +T+R+ Sbjct: 61 VIDVSKNRHGKDNNHGLLLMINPEILARSGA-AVMREGCMSVPDYTGDVERSTELTLRFT 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + I A G A +QHELDHL+G+LF+D ++ LK + +K K Sbjct: 120 EPDGTVREIDASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 168 >gi|145594886|ref|YP_001159183.1| peptide deformylase [Salinispora tropica CNB-440] gi|145304223|gb|ABP54805.1| peptide deformylase [Salinispora tropica CNB-440] Length = 167 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M +P+ I DP+LR + P+ ++D+ L+ ++++ + G G+AA QIGV ++ Sbjct: 1 MTMRPIRIIGDPVLRTPAAPVTSFDADLRALVADLMDTLLGAPGRAGVAAPQIGVSAQVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D H INP + DD EGCLSIP R+ T R MD + Sbjct: 61 VYDADGHRG-----HLINPTL-ELGDDRQDDDEGCLSIPGLYFPTPRAMRATARGMDQHG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q I G LA LQHE DHL G L++D L R +++ Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTLRGETRRRALREVRA 159 >gi|41410016|ref|NP_962852.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis K-10] gi|254777164|ref|ZP_05218680.1| peptide deformylase [Mycobacterium avium subsp. avium ATCC 25291] gi|81700308|sp|Q73T03|DEF_MYCPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|41398849|gb|AAS06468.1| Def [Mycobacterium avium subsp. paratuberculosis K-10] Length = 197 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++P+ + D+ LI +M + M + G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTQPVPVGDDGSLPADLGKLIADMYDTMDAAHGVGLAANQIGVG 60 Query: 56 YRLVVIDLQDHAH--RKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D + V +NP +I D EGCLS+P R++ Sbjct: 61 LRVFVYDCADDRGLTERRRGVVVNPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAS 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + I GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGNPVSIEGHGLFARMLQHETGHLDGFLYLDRL 162 >gi|256370663|ref|YP_003108488.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM] gi|256009455|gb|ACU52815.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM] Length = 180 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + P++I+ P+LR+ IEK ++ I +LI NM + M GIGLAA QIG+ RL Sbjct: 1 MILPILIYGHPLLRKRCLEIEKFSNSNQINSLIQNMYDTMGQAQGIGLAAPQIGISLRLF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +I+ + +K VFINPKI+ + + +EGCLS+P+ ++ R + + Y D N Sbjct: 61 IIEYNNFYKKKFKQVFINPKILKIYGSYLITKEGCLSLPNIIENIIRKNHLIIEYYDENW 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + GLL+ +QHE DH+ G F+DH+S K+ + ++ K+ Sbjct: 121 KKYKQHFHGLLSIIIQHEYDHIEGKFFLDHISDQKKLFLHNQLKKI 166 >gi|33239533|ref|NP_874475.1| peptide deformylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39930846|sp|Q7VED2|DEF_PROMA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33237058|gb|AAP99127.1| N-formylmethionyl-tRNA deformylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 203 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 65/161 (40%), Positives = 96/161 (59%), Gaps = 2/161 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + LR+ ++ I K++ +I +L+ ML MY+ GIGLAA QIG +L+VIDL Sbjct: 32 EIHTLGNSALRQSAKRISKVDKNIRDLVKKMLHSMYAAKGIGLAAPQIGSQQQLLVIDLD 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INP+I FS Y+EGCLSIP DV R + I V + D + + I Sbjct: 92 IENSATPPIILINPEITEFSATIDTYEEGCLSIPGVYLDVIRPSSIKVNFRDEMGRPKKI 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLLA C+QHE+DHLNG+LF+D + + + K++ + Sbjct: 152 NADGLLARCIQHEMDHLNGVLFVDRA--INEEALNKELKEH 190 >gi|300854442|ref|YP_003779426.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM 13528] gi|300434557|gb|ADK14324.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM 13528] Length = 152 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 96/152 (63%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ SR +E+IN I L+D+M E +Y DG+GLAA Q+GVL R++V Sbjct: 1 MALRTVRKYGDSILRKKSRKVEEINERIHVLLDDMEETLYEEDGVGLAAPQVGVLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +NP+I T+S+ +V EGCLSIP +V+R + V+ ++ + Sbjct: 61 IDVGEGILK-----LVNPEI-TYSEGKAVDIEGCLSIPGSEGEVERPKKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +I + LLA L HE+DHLNGILFID + + Sbjct: 115 EIVIEGEDLLARALCHEIDHLNGILFIDKIIK 146 >gi|218295865|ref|ZP_03496645.1| peptide deformylase [Thermus aquaticus Y51MC23] gi|218243603|gb|EED10131.1| peptide deformylase [Thermus aquaticus Y51MC23] Length = 190 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 13/174 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ DP+LR+ +RP++ S + L ++MLE M+ G+GLAA QIG+ RL V Sbjct: 1 MIYPIRLYGDPVLRKKARPVQDF-SGLKKLAEDMLETMWEARGVGLAAPQIGLSQRLFVA 59 Query: 62 ----DLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFI 110 D D R + V +NP I T + EGCLS+P Y +V R+ I Sbjct: 60 VEYADEPDEEERPLRDLVRQVYVVVNPVI-THREGLVEGLEGCLSLPGLYSEEVPRAERI 118 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V + D + + + +G +A QHE+DHL G+LF + L + KR+ +K Sbjct: 119 RVEFQDEEGRRRTLELEGYMARVFQHEIDHLEGVLFFERLPKPKREAFLEKHRA 172 >gi|289422300|ref|ZP_06424150.1| peptide deformylase [Peptostreptococcus anaerobius 653-L] gi|289157245|gb|EFD05860.1| peptide deformylase [Peptostreptococcus anaerobius 653-L] Length = 149 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DP+L + ++ + N + L+D+M + MY+ DG+GLAA Q+G+L R VV Sbjct: 1 MAIRNVVKMGDPVLNKKAKKVVDFNEKLHTLLDDMADTMYNEDGVGLAAPQVGILRRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + INP+II + EGCLS+ DY A+V R ++ V+ D N + Sbjct: 61 VDIG-----TGLIELINPQIIAQEGE-QTDVEGCLSVVDYVAEVTRPNYVKVKAQDRNGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I +GL+A HELDHL GILF++ + + Sbjct: 115 DFEIEGEGLMARAFCHELDHLEGILFVERVEK 146 >gi|209522380|ref|ZP_03270994.1| peptide deformylase [Burkholderia sp. H160] gi|209497186|gb|EDZ97427.1| peptide deformylase [Burkholderia sp. H160] Length = 177 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L R++ P++ + ++ L+ +M E M++ +G GLAA QIGV ++V+ Sbjct: 1 MIHDILKMGDPRLLRIAEPVDHFDTPELHRLVADMFETMHAANGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGSNERYPDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A+G A +QHE DHL G L+ ++ + T+ + Sbjct: 121 DQFGNPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSKFGFTEVL 167 >gi|30263870|ref|NP_846247.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47529297|ref|YP_020646.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186717|ref|YP_029969.1| peptide deformylase [Bacillus anthracis str. Sterne] gi|65321194|ref|ZP_00394153.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis str. A2012] gi|165872270|ref|ZP_02216907.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167636413|ref|ZP_02394712.1| peptide deformylase [Bacillus anthracis str. A0442] gi|167641126|ref|ZP_02399381.1| peptide deformylase [Bacillus anthracis str. A0193] gi|170688865|ref|ZP_02880068.1| peptide deformylase [Bacillus anthracis str. A0465] gi|170708808|ref|ZP_02899244.1| peptide deformylase [Bacillus anthracis str. A0389] gi|177654890|ref|ZP_02936607.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190565855|ref|ZP_03018774.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|227813225|ref|YP_002813234.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|229601957|ref|YP_002868104.1| peptide deformylase [Bacillus anthracis str. A0248] gi|254683424|ref|ZP_05147284.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066] gi|254735906|ref|ZP_05193612.1| peptide deformylase [Bacillus anthracis str. Western North America USA6153] gi|254739846|ref|ZP_05197539.1| peptide deformylase [Bacillus anthracis str. Kruger B] gi|254751036|ref|ZP_05203075.1| peptide deformylase [Bacillus anthracis str. Vollum] gi|254756701|ref|ZP_05208730.1| peptide deformylase [Bacillus anthracis str. Australia 94] gi|39931068|sp|Q81WH1|DEF1_BACAN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|30258514|gb|AAP27733.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47504445|gb|AAT33121.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180644|gb|AAT56020.1| polypeptide deformylase [Bacillus anthracis str. Sterne] gi|164711946|gb|EDR17486.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167510906|gb|EDR86297.1| peptide deformylase [Bacillus anthracis str. A0193] gi|167528155|gb|EDR90942.1| peptide deformylase [Bacillus anthracis str. A0442] gi|170126293|gb|EDS95184.1| peptide deformylase [Bacillus anthracis str. A0389] gi|170667220|gb|EDT17980.1| peptide deformylase [Bacillus anthracis str. A0465] gi|172080401|gb|EDT65488.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190562774|gb|EDV16740.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|227002722|gb|ACP12465.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|229266365|gb|ACQ48002.1| peptide deformylase [Bacillus anthracis str. A0248] Length = 156 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+GLLA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGLLARAIQHEIDHLHGVLFTSKVTR 148 >gi|83816785|ref|YP_445415.1| peptide deformylase [Salinibacter ruber DSM 13855] gi|294507298|ref|YP_003571356.1| peptide deformylase [Salinibacter ruber M8] gi|123739741|sp|Q2S316|DEF_SALRD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|83758179|gb|ABC46292.1| peptide deformylase [Salinibacter ruber DSM 13855] gi|294343626|emb|CBH24404.1| Peptide deformylase [Salinibacter ruber M8] Length = 195 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 66/161 (40%), Positives = 94/161 (58%), Gaps = 9/161 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ LR + P+++ + LIDNM+E M++ GIGLAA Q+G RL V+ Sbjct: 1 MILPIYVYGHEALRNETDPVQENTEALQELIDNMIETMHNAAGIGLAAPQVGRTERLFVV 60 Query: 62 DLQDHAHR---------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 DL A PMVFINP+I+ S+D + +EGCLSIP+ R V R I + Sbjct: 61 DLTPMADEIAEAGEPLPPQPMVFINPEIVEESEDTAEMEEGCLSIPEVREAVARPERIRM 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 RY D + Q + A G+L+ LQHE DHL+G+LF D+LS Sbjct: 121 RYRDREFEEQELEAGGMLSRVLQHERDHLDGVLFTDYLSSF 161 >gi|154175184|ref|YP_001407439.1| peptide deformylase [Campylobacter curvus 525.92] gi|112803277|gb|EAU00621.1| peptide deformylase [Campylobacter curvus 525.92] Length = 174 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 4/160 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L VS+ +E + ++ L+D+M E M + DGIGLAA+Q+GV R+ ++ Sbjct: 1 MVLEILSYPNKKLYEVSKEVETFDEELHKLLDDMYETMIAKDGIGLAAIQVGVAKRIFIV 60 Query: 62 DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L + + + + INP+ VYQEGCLS+P + DVKR+ + +++ D Sbjct: 61 NLSNEEGVQDKADLIEIINPEF-ELKVGECVYQEGCLSVPGFYEDVKRAERVKIKFQDRF 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Q + I DGLLA LQHE DHL+G LFI+ + KR Sbjct: 120 GQERQIETDGLLAVALQHENDHLDGHLFIEKIGYNKRKKF 159 >gi|159902617|ref|YP_001549961.1| peptide deformylase [Prochlorococcus marinus str. MIT 9211] gi|159887793|gb|ABX08007.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9211] Length = 201 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + + LR+ ++ + K+++ I LI ML MYS GIGLAA Q+G+ +L+VIDL Sbjct: 33 IHTLGNLELRQTAQRVSKVDNSIRTLIKKMLHSMYSAKGIGLAAPQVGIHKQLLVIDLDI 92 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+V INP+I FS Y+EGCLSIP +V R + I + + D + + + Sbjct: 93 ENSTTPPIVLINPQITDFSAAIETYEEGCLSIPGVYLNVIRPSSIKLNFRDEMGRPKKMN 152 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ADGLL+ C+QHE+DHLNG+LF+D ++ + ++K++ + Sbjct: 153 ADGLLSRCIQHEMDHLNGVLFVDRVTNE--NDLSKELQEH 190 >gi|47569494|ref|ZP_00240174.1| polypeptide deformylase [Bacillus cereus G9241] gi|47553823|gb|EAL12194.1| polypeptide deformylase [Bacillus cereus G9241] Length = 156 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETSCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|313901452|ref|ZP_07834909.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM 13965] gi|313468280|gb|EFR63737.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM 13965] Length = 540 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 6/150 (4%) Query: 5 PLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+V +P+LR ++P+ ++ +I L+D M MY+ DGIGLAA Q+GV R++V+D+ Sbjct: 25 PIVKGADEPVLRTPAQPVARVTREIRQLLDRMAATMYAADGIGLAAPQVGVSKRVIVVDV 84 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D + INP+I+ ++ EGCLS+P A+V+R + V +D + Sbjct: 85 GD-----GLIELINPEIVRRGEEVEAAYEGCLSLPRLLAEVERPTSVQVTGLDRRGRRIW 139 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153 I +G+LA CLQHE+DHL+G+L D ++ Sbjct: 140 IEGEGVLARCLQHEIDHLDGVLITDRARKV 169 >gi|331269686|ref|YP_004396178.1| peptide deformylase [Clostridium botulinum BKT015925] gi|329126236|gb|AEB76181.1| peptide deformylase [Clostridium botulinum BKT015925] Length = 156 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ + +++IN I+ LI++M E MY DG+GLAA QIGVL RLVV Sbjct: 6 MALRNIRVNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVV 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+II+ S+ EGCLS+P + V R + + ++ + Sbjct: 66 IDVGE-----GPISLINPEIIS-SEGSQTDYEGCLSLPGKQGKVTRPYKVVAKALNEKGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 I+ + LLA + HELDHL+G+LF+D + + K + Sbjct: 120 EVEIHGEALLARAICHELDHLDGVLFMDKVVKGKEE 155 >gi|284990128|ref|YP_003408682.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] gi|284063373|gb|ADB74311.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] Length = 161 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ DP+LR + + + ++ L+ ++ + + G+AA QIGV R Sbjct: 1 MTIRPIRELGDPVLRTPADEVRSFDKELAALVRDLEDTVADPGRAGVAAPQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP+I+ S++ EGCLSIP A R+ V D + + Sbjct: 61 YNVDGRIG-----HVVNPRIVELSEETQDGDEGCLSIPGLWAPTVRAMHAVVEGFDVHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + GL+A LQHE+DHL+G +F+D L+ R + + Sbjct: 116 PVRLEGTGLMARALQHEVDHLDGKVFLDRLTGDARKAALRALR 158 >gi|167772294|ref|ZP_02444347.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM 17241] gi|167665397|gb|EDS09527.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM 17241] Length = 155 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D LR+ SRP+ N + L+D+M E M G+G+AA Q+GVL R VV Sbjct: 1 MALRNILKEGDERLRKKSRPVTDFNERLWTLLDDMYETMKD-GGVGIAAPQVGVLRRAVV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + H +NP I+ S D EGCLSIP V R A + ++ D + Sbjct: 60 IDVGEGKHE-----LVNPVIVEQSGD-QCGGEGCLSIPGQYGLVHRPAQLRLKAQDRYGK 113 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A + HE+DHL+GILFID R+ Sbjct: 114 PFELEAEGYFAVAVCHEVDHLDGILFIDKAERM 146 >gi|238059170|ref|ZP_04603879.1| peptide deformylase [Micromonospora sp. ATCC 39149] gi|237880981|gb|EEP69809.1| peptide deformylase [Micromonospora sp. ATCC 39149] Length = 175 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M +P+ I DP+LR P+ ++++ L+ ++++ + G G+AA QIGV ++ Sbjct: 8 MTMRPIRIIGDPVLRTACEPVTTFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVSAQVF 67 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + H INP + SD+ EGCLSIP R+ T D + Sbjct: 68 VYNADGHRG-----HMINPTL-ELSDETQGDDEGCLSIPGLYFPTPRALHATAHGFDQHG 121 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I G LA LQHE DHL+G L++D L R +++ Sbjct: 122 EPLTICGSGFLARALQHETDHLHGRLYVDTLRGDTRRQALREIRA 166 >gi|168334698|ref|ZP_02692834.1| peptide deformylase [Epulopiscium sp. 'N.t. morphotype B'] Length = 160 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+VSRP+ K + + + +++M E M S G+GLAA Q+G L R+ + Sbjct: 1 MAIRSIRVDDDPILRKVSRPVVKFDPLLHSFLNDMEETMRSASGVGLAAPQVGTLKRVFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP II F D EGCLS+P V R +T++ D Sbjct: 61 IDIGE-----GLVEFINPIII-FEDGEQTGDEGCLSVPGRYGVVTRPNTVTIKAQDRYGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 H I L A + HE DHL+G +F+D Sbjct: 115 HFEITKSELFARAICHENDHLDGKIFVD 142 >gi|257784671|ref|YP_003179888.1| peptide deformylase [Atopobium parvulum DSM 20469] gi|257473178|gb|ACV51297.1| peptide deformylase [Atopobium parvulum DSM 20469] Length = 180 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 1/161 (0%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 V++PDP L + I+ IN D+ + ++ML+VMY+TDG+GLA QIG + R+VVID+ Sbjct: 9 VLWPDPRLSQKCEEIDDINDDVRKMAEHMLKVMYATDGVGLAGPQIGYMKRMVVIDVDYP 68 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 ++NP V INP+I + VY+EGCLS P V R + + V + + A Sbjct: 69 NGQENPFVLINPEIKVADGEPRVYEEGCLSFPGITVPVTRPSHVVVHAYNLDGDLMRYEA 128 Query: 127 DG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +G L A CLQHE+DH+NG+ DHL R ++ + + Sbjct: 129 EGDLFAVCLQHEIDHINGVTMPDHLGPGARMETLREYKEAL 169 >gi|33519686|ref|NP_878518.1| peptide deformylase [Candidatus Blochmannia floridanus] gi|39930852|sp|Q7VQC0|DEF_BLOFL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33517349|emb|CAD83734.1| polypeptide deformylase [Candidatus Blochmannia floridanus] Length = 175 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 69/165 (41%), Positives = 100/165 (60%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++R + I+ D +I +M E MY GIGLAA Q+ + +++V Sbjct: 1 MSILQMLYYPDQRLRKIARSVSIISHDTKKIISDMFETMYFQQGIGLAATQVDIHQKIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL ++ ++ +VFINP II + EGCLSIP RA V RS I V+ +D N Sbjct: 61 IDLNNNIQKR--LVFINPCIIKKIGTITHIIEGCLSIPKIRASVPRSQNIIVQSLDENGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + A LL+ C+QHE+DHL G LFID+LS K I KK++K Sbjct: 119 NFEMEATDLLSVCIQHEIDHLLGKLFIDYLSPFKIQRIHKKINKW 163 >gi|21672742|ref|NP_660809.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008354|sp|Q8K975|DEF_BUCAP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21623388|gb|AAM68020.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 167 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 101/156 (64%), Gaps = 3/156 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EKI +I + +NM++ MY +GIGLAA Q+ + +++V Sbjct: 1 MSVLKILHYPDQRLRLIAKPVEKITKEIYKITNNMIDTMYQEEGIGLAATQVNIQLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + ++ INPKII S+ +EGCLSIP+YRA V R +I ++ ++ N Sbjct: 61 IHKIHAIEKN--LILINPKIIEKKGSISI-EEGCLSIPEYRAFVPRFNYIKIQAINLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 I AD +L+ C+QHE+DHLNG LFID+LS LKR+ Sbjct: 118 TVEIEADSILSICIQHEIDHLNGKLFIDYLSELKRE 153 >gi|187928362|ref|YP_001898849.1| peptide deformylase [Ralstonia pickettii 12J] gi|187725252|gb|ACD26417.1| peptide deformylase [Ralstonia pickettii 12J] Length = 177 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV++P+E+ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP I SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNDRYPDAPAVPKTVLINPTIEPLSDEMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A+G A +QHE DHL G+L+ + R T+ + Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTRFGFTEVL 167 >gi|85700131|gb|ABC74515.1| polypeptide deformylase [Helicobacter pylori] gi|85700141|gb|ABC74520.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 104/170 (61%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + ILR +S+ + ++ + + +M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYSSKILRTISKEVVSFDAKLHQQLVDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+L H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169 >gi|167747883|ref|ZP_02420010.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662] gi|167652705|gb|EDR96834.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662] Length = 157 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 5/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ S+ I+++ S M LI++M + MY G+GLAA Q+G+L RLVV Sbjct: 1 MAIRNIRKMGDEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + P+V INPKI+ + + EGCLS+P A VKR + +D + Sbjct: 61 ID----TYEGQPLVLINPKIVEKDGE-QIGDEGCLSLPGKVAVVKRPNHVVCEALDRDMN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + +GLLA + HELDHL+G+L+ D RD+ ++ Sbjct: 116 PIRVEGEGLLARAICHELDHLDGVLYPDVAEEPVRDVEEEE 156 >gi|126728525|ref|ZP_01744341.1| peptide deformylase [Sagittula stellata E-37] gi|126711490|gb|EBA10540.1| peptide deformylase [Sagittula stellata E-37] Length = 165 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 1/165 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD LR S P+ S + L+++M E MY+ G GLAA Q+GV RL V Sbjct: 1 MSLLPILTWPDTGLRAASMPVRAP-SAVARLVEDMFETMYAAPGRGLAAPQVGVRSRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D K P V INP + +E CLS+P V R I +RY D + + Sbjct: 60 MDATWKDGEKTPTVCINPVVAPLDGPEEPGEEACLSMPGVSVMVTRPTRIRLRYTDLDDK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + G A QHE DHL+G++ HL +R ++ + L Sbjct: 120 THEVVLTGAAARIAQHETDHLDGVMHFQHLPLAERGVLLAEYEAL 164 >gi|187924438|ref|YP_001896080.1| peptide deformylase [Burkholderia phytofirmans PsJN] gi|187715632|gb|ACD16856.1| peptide deformylase [Burkholderia phytofirmans PsJN] Length = 177 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L R++ P++ + ++ L+ +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVI 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGHNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A+G A +QHE DHL G L+ ++ + T+ + Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAKFGFTEVL 167 >gi|163744871|ref|ZP_02152231.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45] gi|161381689|gb|EDQ06098.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45] Length = 165 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 83/155 (53%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L + PIE+I +I L +MLE MY+ G GLA Q+G + RL V Sbjct: 1 MSMREVLRWPDPRLAEICAPIEEITPEIEQLAADMLETMYAAPGRGLAGPQVGAMLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++ +P+V INP ++ EGCLSIP D+ R + + + + N Sbjct: 61 MDAGWKENKSDPLVCINPMFQEIGEERVTNTEGCLSIPGISTDISRPSQVQMVWTGLNGG 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + +G A QHE+DHL+G++ DHL R Sbjct: 121 RYVQSFEGAAALIAQHEMDHLDGVVTFDHLDAETR 155 >gi|163733889|ref|ZP_02141331.1| peptide deformylase, putative [Roseobacter litoralis Och 149] gi|161393000|gb|EDQ17327.1| peptide deformylase, putative [Roseobacter litoralis Och 149] Length = 165 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 98/165 (59%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I D++ + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MSVRAYLQWPDARLRTAAADVPEITPDVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R+ + NP+II S + ++E ++P A V+R +TVR+MD Sbjct: 61 VDASDSRDRR--IRLANPEIIEASAIMNDHEEASPNLPGVFAKVRRPRGVTVRFMDETGT 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL G ++ D+LS++KRDM+ +K KL Sbjct: 119 YVRRDFVGLEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163 >gi|120436619|ref|YP_862305.1| peptide deformylase [Gramella forsetii KT0803] gi|158512448|sp|A0M3P3|DEF_GRAFK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|117578769|emb|CAL67238.1| peptide deformylase [Gramella forsetii KT0803] Length = 196 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+L++ ++ I+K + LI+NM + MY+ G+GLAA Q+G+ R+ +I Sbjct: 1 MILPIIAYGDPVLKKKAKDIDKDYPKLEELINNMWDTMYNAYGVGLAAPQVGLPVRMFMI 60 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + VFINP+II + + + EGCLSIP+ R DV R Sbjct: 61 DPAPFADDEELDEAEKKVLMDLRKVFINPQIIEETGEEWAFSEGCLSIPEVREDVFRQPD 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D N + GL A +QHE DH+ GILF D LS LK+ +I K++ + + + Sbjct: 121 ITIEYHDENWEKHTETYSGLAARVIQHEYDHIEGILFTDKLSSLKKRLIKSKLANISKGK 180 >gi|229495940|ref|ZP_04389664.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406] gi|229317032|gb|EEN82941.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406] Length = 190 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 5/170 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ ++ P+LR V++ I ++ LI M + MY +DGIGLAA QIG RL+VID Sbjct: 3 PIYLYGHPVLREVAQDITPEYPNLSGLIAEMWKSMYESDGIGLAAPQIGKSIRLLVIDAS 62 Query: 65 DHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 A + V IN +I S++ +EGCLS+P V+R IT+ Y+D Sbjct: 63 PMAEYFPECKDFKTVMINARITELSEETLSEEEGCLSLPGIHERVERPKEITIEYLDEQF 122 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + G A +QHE DHL G LF DH+S L++ ++ K++++ + Sbjct: 123 TPQTRHLTGFAARVVQHEYDHLEGKLFTDHVSTLRKSLLKNKLARIASGK 172 >gi|254526876|ref|ZP_05138928.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202] gi|221538300|gb|EEE40753.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202] Length = 201 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 95/162 (58%), Gaps = 3/162 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + LR ++ I K++ DI L ML+ MYS GIGLAA Q+G+ L+VID+ Sbjct: 32 EIYKLGSKALRTTAKRISKVDIDIRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVIDIN 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INP+I + + Y+EGCLSIP +V R + I +++ D + + + Sbjct: 92 FEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS---RLKRDMITKKMS 163 ADGLLA C+QHE+DHL G+LF+D ++ LK+++I + Sbjct: 152 NADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELIKEGYK 193 >gi|254431098|ref|ZP_05044801.1| peptide deformylase [Cyanobium sp. PCC 7001] gi|197625551|gb|EDY38110.1| peptide deformylase [Cyanobium sp. PCC 7001] Length = 180 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 8/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P++ DP LR+V+ + + + ++ L+D++ + M + DG GLAA QIGV R Sbjct: 1 MAIRPVLRLGDPFLRQVAVAVPRQAIGSPELSALLDDLRDTMAARDGAGLAAPQIGVALR 60 Query: 58 LVVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +V+ A V INP + S EGCLS+P R V R I Sbjct: 61 VVIFGFTTNPRYPEAPPIPDTVLINPVLTPLGSARSSGWEGCLSVPGLRGLVPRWDRIRY 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D + +G A +QHE DHL+G+LF D + + +++ Sbjct: 121 TGLDEQGRPLQREVEGFHARVVQHECDHLDGVLFPDRIEDRTAFGFSAELAA 172 >gi|296270495|ref|YP_003653127.1| peptide deformylase [Thermobispora bispora DSM 43833] gi|296093282|gb|ADG89234.1| peptide deformylase [Thermobispora bispora DSM 43833] Length = 162 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 11/161 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + DP+LR + P+ + + ++ LID M +VMY+ DG+GLA QIGV R+ V D+ Sbjct: 3 EIRHIGDPVLRTPAEPVTEFDRELRRLIDEMFQVMYAADGVGLAGPQIGVGKRVFVYDI- 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD------YRADVKRSAFITVRYMDCN 118 +NP++ + V +EGCLS+P A R+A +T+R D Sbjct: 62 ----VNRKGHVVNPELTIDDPEQIVAEEGCLSVPSKETGKPLYAPTPRAAGVTLRGFDRL 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + + A G+LA C QHE DHLNG L++D L + +R I Sbjct: 118 GRPITVKARGMLARCFQHEFDHLNGTLYVDRLPKEERRRIL 158 >gi|310642740|ref|YP_003947498.1| peptide deformylase [Paenibacillus polymyxa SC2] gi|309247690|gb|ADO57257.1| Peptide deformylase [Paenibacillus polymyxa SC2] Length = 159 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 55/144 (38%), Positives = 89/144 (61%), Gaps = 4/144 (2%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PD +L +V++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+V+D D Sbjct: 4 PDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIVVDAGD---E 60 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + INP+I+ + + EGCLSIP DV+R+ +TV+ ++ + + A GL Sbjct: 61 HGLIKMINPEIVAEEGE-QLGPEGCLSIPGLNGDVRRAEKVTVKGLNREGKAITVTATGL 119 Query: 130 LATCLQHELDHLNGILFIDHLSRL 153 L+ QHE+DHLNG+LF D ++ Sbjct: 120 LSRAFQHEIDHLNGVLFTDIAEKV 143 >gi|269836415|ref|YP_003318643.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745] gi|269785678|gb|ACZ37821.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745] Length = 177 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 5/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M LV DP LR+ + I K++ D+ L +MLE MY+ DG+GLA Q+GV+ R++V Sbjct: 1 MAVLKLVYEGDPRLRQKAVRIRKVDDDLRRLAADMLETMYAADGVGLAGPQVGVMRRIIV 60 Query: 61 IDLQ-DHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 I + + +P M INP+I+ S V EGCLSIP++ +V R+ +TV+ D Sbjct: 61 IGVPAGFENEDDPPIEMALINPEIVRASG-RQVGPEGCLSIPNWYGEVPRAMHVTVKARD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + I A G LA LQHE+DHL+GILF D + Sbjct: 120 LDDREIRIKASGGLARILQHEIDHLDGILFTDRVED 155 >gi|227824654|ref|ZP_03989486.1| peptide deformylase [Acidaminococcus sp. D21] gi|226905153|gb|EEH91071.1| peptide deformylase [Acidaminococcus sp. D21] Length = 164 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 91/158 (57%), Gaps = 7/158 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PILR + + + + + + M E MY+ +G GLAA QIG+ R++V Sbjct: 9 MSLLPIVKVGAPILREKAEAVTRFDKKLEKTLKAMAESMYANNGCGLAAPQIGLSKRMIV 68 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D A + F+NP + F + + EGCLS+ DY +VKR+A +TVR+ D Sbjct: 69 IDADDGAGIRE---FVNPVLSEFKGE-EIDTEGCLSVDDYEGEVKRAAEVTVRFQDRKGG 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH---LSRLKR 155 H + A GLLA LQHE DHL+GILFID LS ++ Sbjct: 125 HWRLTASGLLARALQHECDHLDGILFIDRALSLSPKRK 162 >gi|86741351|ref|YP_481751.1| peptide deformylase [Frankia sp. CcI3] gi|86568213|gb|ABD12022.1| peptide deformylase [Frankia sp. CcI3] Length = 230 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 40/204 (19%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ DP+LR + + + ++ + L+ +M++ MY G+GLAA QIGV RL V Sbjct: 1 MTVLPIRTVGDPVLRTPTTLVTEFDTALGRLVTDMIDTMYDAPGVGLAAPQIGVGLRLFV 60 Query: 61 IDLQDHAH---------------------RKNPMVFINPKIITFSDDF------------ 87 D+ P P I S + Sbjct: 61 FDVDYDPRDESVPRVPRVVVNPVLELGPDPGRPGETQRPGGIQRSGETQRSGETQRSGET 120 Query: 88 -------SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 EGCLS+P R+ VR +D Q +GLLA C QHE+DH Sbjct: 121 QRSGETQQHGPEGCLSVPGLHFPTTRALAARVRGVDVTGQPVEYAGEGLLARCFQHEVDH 180 Query: 141 LNGILFIDHLSRLKRDMITKKMSK 164 L+GIL++D L+ R + + + Sbjct: 181 LDGILYVDRLTGEARRAAVQALRE 204 >gi|302766631|ref|XP_002966736.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii] gi|300166156|gb|EFJ32763.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii] Length = 198 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 57/147 (38%), Positives = 84/147 (57%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PDP LR + I + ++ L+D ML+VMY TDG+GL+A Q+GV RL+V + + Sbjct: 13 IVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNPEG 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + VF+NP I+ F + +EGCLS +ADV+R I V D N + Sbjct: 73 ERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFGTT 132 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 G A QHE DHL G+L+ID ++ Sbjct: 133 FRGWTARIFQHEYDHLEGVLYIDRMTP 159 >gi|71892002|ref|YP_277732.1| peptide deformylase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123761479|sp|Q493I1|DEF_BLOPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71796108|gb|AAZ40859.1| polypeptide deformylase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 173 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 3/153 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR ++ P+ ++ D +I++M + MY GIGLAA Q+ + +++V Sbjct: 1 MSILEILYYPDKRLRTIADPVVAVSDDTNQIINDMFDTMYFKKGIGLAATQVNIHQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + K +VFINP I + E CLSIP V RS IT++ +D Sbjct: 61 IDL--YKKNKQRLVFINPSITKKTG-IISIPESCLSIPQIYEIVPRSEKITIQSLDQYGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+ LLA C+QHE+DHL G LFIDHLS L Sbjct: 118 KFEMEANNLLAICIQHEVDHLFGKLFIDHLSPL 150 >gi|302792493|ref|XP_002978012.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii] gi|300154033|gb|EFJ20669.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii] Length = 198 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 57/147 (38%), Positives = 84/147 (57%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++PDP LR + I + ++ L+D ML+VMY TDG+GL+A Q+GV RL+V + + Sbjct: 13 IVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNPEG 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + VF+NP I+ F + +EGCLS +ADV+R I V D N + Sbjct: 73 ERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFGTT 132 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 G A QHE DHL G+L+ID ++ Sbjct: 133 FRGWTARIFQHEYDHLEGVLYIDRMTP 159 >gi|253681963|ref|ZP_04862760.1| peptide deformylase [Clostridium botulinum D str. 1873] gi|253561675|gb|EES91127.1| peptide deformylase [Clostridium botulinum D str. 1873] Length = 149 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 94/155 (60%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ + +++IN I+ LI++M E MY DG+GLAA QIGVL RLVV Sbjct: 1 MALRNIRVNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + INP+II++ EGCLS+P + V R + + ++ + Sbjct: 61 IDVGDGS-----ISLINPEIISYEGS-QTDYEGCLSLPGKQGKVTRPYKVIAKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I +GLLA + HELDHL+G+LF+D + + ++ Sbjct: 115 EVEINGEGLLARAICHELDHLDGVLFMDKVIKEEK 149 >gi|326798672|ref|YP_004316491.1| peptide deformylase [Sphingobacterium sp. 21] gi|326549436|gb|ADZ77821.1| Peptide deformylase [Sphingobacterium sp. 21] Length = 189 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + LR+ + D+ + I N+ + + + G+GLAA Q+ +L V+ Sbjct: 1 MILPILAYGATNLRKACLTVSPSYPDLNSFIKNLWQTLDNAQGVGLAAPQVNENIQLFVV 60 Query: 62 D---------LQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D +D A + P + FINPKI+ SD+ + +EGCLSIP VKR ++ Sbjct: 61 DSRISFSSVNTEDMAQKDYPGIRQAFINPKIVAHSDEMELDEEGCLSIPGISFPVKRFSW 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + Y+D N Q Y G A +QHE DH+ G L ID+LS L++ MI KK++K+ R Sbjct: 121 IKMTYLDENFQLHTDYFYGRTARIIQHEYDHILGKLPIDYLSELQKLMINKKLNKIRNGR 180 >gi|323526493|ref|YP_004228646.1| peptide deformylase [Burkholderia sp. CCGE1001] gi|323383495|gb|ADX55586.1| peptide deformylase [Burkholderia sp. CCGE1001] Length = 177 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L R++ P++ + ++ LI +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIRGILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A+G A +QHE DHL G L+ ++ + T+ + Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAKFGFTEVL 167 >gi|170748510|ref|YP_001754770.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] gi|170655032|gb|ACB24087.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] Length = 165 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV+FPDP L R + P++ + L D++ + + + IGL A IGV RLVV Sbjct: 1 MPARPLVLFPDPRLTRPAEPVDAFGPSLQALADDVRDTLMAESAIGLTAPHIGVPARLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + + +++NP + S + + + EG +S+P R + R A I + Y D + Sbjct: 61 VRMSPNESAR---IYVNPVVSWASPETATHDEGSVSMPGVRERIARPARIRLSYRDLDGS 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +G A LQHE+D L+G+ +I LSRLKR+ + K+ K Sbjct: 118 AREAETEGFPAAVLQHEIDQLDGVFWIARLSRLKRERLLKRFEK 161 >gi|327200563|pdb|3M6R|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin gi|327200564|pdb|3M6R|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin gi|327200565|pdb|3M6R|C Chain C, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin gi|327200566|pdb|3M6R|D Chain D, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin Length = 193 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 89/163 (54%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PDPILR ++ I+ + ++ NL+D M +VMY TD IGL+A Q+G+ +L+V + Sbjct: 2 EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDMIGLSAPQVGLNVQLMVFNPA 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 62 GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L A QHE DHL G+LF D ++ D I +++ L + Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 164 >gi|166364192|ref|YP_001656465.1| peptide deformylase [Microcystis aeruginosa NIES-843] gi|159030946|emb|CAO88636.1| def [Microcystis aeruginosa PCC 7806] gi|166086565|dbj|BAG01273.1| polypeptide deformylase [Microcystis aeruginosa NIES-843] Length = 191 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 61/143 (42%), Positives = 90/143 (62%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I K++ I L ML+ MYS++GIGLAA Q+ V +L+VID + Sbjct: 22 LGDRVLRQPAKRIAKVDDSIRQLAREMLQTMYSSNGIGLAAPQVAVNKQLIVIDCEHDKP 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P++ INP+II +S + +EGCLSIPD DV R I V Y D + + + A+G Sbjct: 82 ENPPLILINPQIIGYSRELCKAEEGCLSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANG 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA +QHE+DHLNG++F+D + Sbjct: 142 LLARVIQHEMDHLNGVMFVDRVD 164 >gi|17546118|ref|NP_519520.1| peptide deformylase [Ralstonia solanacearum GMI1000] gi|23396561|sp|Q8XZJ6|DEF2_RALSO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|17428414|emb|CAD15101.1| putative peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein [Ralstonia solanacearum GMI1000] Length = 177 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ D L RV++P+++ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRPILKMGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP I SD EGCLS+P R V R + Sbjct: 61 FGFDRNDRYPDAPAVPKTVLINPTIEPLSDAMEDGWEGCLSVPGLRGVVPRYTRLRYTGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + A+G A +QHE DHL GIL+ + R T+ Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVQDFTRFGFTE 165 >gi|317472516|ref|ZP_07931837.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] gi|316900030|gb|EFV22023.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] Length = 157 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 5/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ S+ I+++ S M LI++M + MY G+GLAA Q+G+L RLVV Sbjct: 1 MAIRNIRKMGDEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + P+V INPKI+ + + EGCLS+P A VKR + +D + Sbjct: 61 ID----TYEGQPLVLINPKIVEKDGE-QIGDEGCLSLPGKVAVVKRPNHVVCEALDQDMN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + +GLLA + HELDHL+G+L+ D RD+ ++ Sbjct: 116 PIRVEGEGLLARAICHELDHLDGVLYPDVAEEPVRDVEEEE 156 >gi|163792491|ref|ZP_02186468.1| Formylmethionine deformylase [alpha proteobacterium BAL199] gi|159182196|gb|EDP66705.1| Formylmethionine deformylase [alpha proteobacterium BAL199] Length = 183 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 8/177 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K +V DP+LR V+ + + I LID+M+ + GIGLAA QIG+L R++ Sbjct: 1 MTSKSIVRVGDPVLRSVAALVPDPTAPAIRQLIDDMVASLEEAGGIGLAAPQIGILQRVL 60 Query: 60 VIDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + D P INP + D ++ EGCLSIP R +V R + V Sbjct: 61 IFWVPDARATNEPDDGPCPLTALINPVLEPLDDRMALGWEGCLSIPGLRGEVPRHLRMRV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G A LQHE+DHL+GIL++D ++ R T+++ + R Sbjct: 121 TATTPEGEPFEAIVAGTRARVLQHEVDHLDGILYLDRMTDFTRFGFTEEVHEAEAER 177 >gi|134299448|ref|YP_001112944.1| peptide deformylase [Desulfotomaculum reducens MI-1] gi|134052148|gb|ABO50119.1| peptide deformylase [Desulfotomaculum reducens MI-1] Length = 172 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ + DP LR+V +P+ +I +I+ L+++M + + +T G LAA Q+G L R+V Sbjct: 1 MPERMIGKLGDPALRKVCKPVCEITPNILQLLNDMADTLRATPNGAALAAPQVGFLRRVV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + INP+II S + V EGCLS+P VKRS F+ V+ M+ Sbjct: 61 VIDLG-----NEKIELINPEIIEKSGE-QVGSEGCLSLPGIWGRVKRSKFVKVKAMNREG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + ++ GLLA CLQHE+DHL+GIL+IDH+ Sbjct: 115 EEILVEGKGLLARCLQHEIDHLDGILYIDHV 145 >gi|309782141|ref|ZP_07676871.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] gi|308919207|gb|EFP64874.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] Length = 177 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV++P+E+ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP + SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNDRYPDAPAVPKTVLINPTVEPLSDEMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A+G A +QHE DHL G+L+ + R T+ + Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTRFGFTEVL 167 >gi|116071395|ref|ZP_01468664.1| peptide deformylase [Synechococcus sp. BL107] gi|116066800|gb|EAU72557.1| peptide deformylase [Synechococcus sp. BL107] Length = 201 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 2/159 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + LR+ ++ I K+N + L +ML MY+ GIGLAA Q+ V +L+VIDL Sbjct: 32 EIHTLGADALRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDLD 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP+I S Y+EGCLSIP DV R I + Y D + + + Sbjct: 92 LENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ADGL+A C+QHE+DHLNG+LF+D ++ +D + K++ Sbjct: 152 KADGLMARCIQHEMDHLNGVLFVDRVTD--QDGLQKELK 188 >gi|291456898|ref|ZP_06596288.1| peptide deformylase [Bifidobacterium breve DSM 20213] gi|291382175|gb|EFE89693.1| peptide deformylase [Bifidobacterium breve DSM 20213] Length = 161 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++LE + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + S + EGCLS+P +R+ + VR +D + + Sbjct: 61 YNIDGKVGY-----VLNPILEEKSGE-QYGDEGCLSVPGLWYKTRRAEYARVRGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ G++ LQHE DHL+G +++D L + +R K M + + Sbjct: 115 EVVLEGTGIMGRMLQHECDHLDGHVYLDRLEKEERRAAMKYMREHQK 161 >gi|291542591|emb|CBL15701.1| peptide deformylase [Ruminococcus bromii L2-63] Length = 158 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V D +L + RP+ K + + +LID+M+E ++ +G+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVKEGDSVLTKKCRPVVKFDDRLADLIDDMIETLHKAEGVGLAAPQVGILRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ +NPKII +S EGCLSIP R ++ V+ D + Sbjct: 61 IDVGE-----GPIELVNPKIIAYSGKQETL-EGCLSIPGKWGYTVRPDYVKVKAQDRHGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +I LLA HELDHL GILF +R+ Sbjct: 115 EFVIDGKDLLAKAFCHELDHLEGILFTQVATRM 147 >gi|254485851|ref|ZP_05099056.1| peptide deformylase [Roseobacter sp. GAI101] gi|214042720|gb|EEB83358.1| peptide deformylase [Roseobacter sp. GAI101] Length = 165 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+ LR + + +I DI L D+M+ M + G+GLAA QIGV+ ++ V Sbjct: 1 MTVRKIVPWPNTCLRTAAAEVPEITDDIRALWDDMIATMDAMPGVGLAAPQIGVMLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +++ + NP I+ S + + E ++P A VKR +TVRY+D Sbjct: 61 VDASQARNKR--IRLANPVILDASAILNEHDEASPNLPGVSAKVKRPRGVTVRYLDETGV 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL AT +QH++DHL G ++ D+LS+ +RDM+ +K K Sbjct: 119 VTRRDFVGLEATSVQHQIDHLAGKMYFDNLSKTRRDMLLRKARKF 163 >gi|195953865|ref|YP_002122155.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] gi|195933477|gb|ACG58177.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] Length = 171 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 98/167 (58%), Gaps = 3/167 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V FP+ IL+R + P++ I+++I +I M E MY DGIGLAA Q+ + ++VID Sbjct: 3 EIVTFPNEILKRKTNPVKSIDAEIKEIIKEMKETMYKNDGIGLAANQVNIPLSIMVIDTT 62 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + K V INP ++ + ++EGCLS P + +V R+ IT++ ++ + Sbjct: 63 SREDDQEKFKDVLINPTVLAKEGEI-KFKEGCLSFPGLQVEVIRAKEITIKAINECEEEV 121 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I+ GL A QHE DHLNGI F+D LS +K+ + +K K+++ + Sbjct: 122 ILNLSGLPAIVFQHEFDHLNGITFLDRLSGIKKRLALEKYQKMLKEK 168 >gi|87301353|ref|ZP_01084194.1| peptide deformylase [Synechococcus sp. WH 5701] gi|87284321|gb|EAQ76274.1| peptide deformylase [Synechococcus sp. WH 5701] Length = 201 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 63/148 (42%), Positives = 87/148 (58%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ ++ I K++ + L NML MYS GIGLAA Q+GV +++VIDL Sbjct: 33 IHRLGDQVLRQSAKRISKVDESVRELARNMLRSMYSAHGIGLAAPQVGVHKQVLVIDLDP 92 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 PMV +NP+I S + Y+EGCLSIP V R + V Y D + + I Sbjct: 93 ENPATPPMVLVNPEINATSAALNTYEEGCLSIPGVYLSVVRPSEAEVSYRDEQGRPRRIK 152 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153 ADGLLA C+ HE+DHL G+LF+D +S Sbjct: 153 ADGLLARCILHEMDHLKGVLFVDLVSDE 180 >gi|320103814|ref|YP_004179405.1| peptide deformylase [Isosphaera pallida ATCC 43644] gi|319751096|gb|ADV62856.1| peptide deformylase [Isosphaera pallida ATCC 43644] Length = 200 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 2/161 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P P LR S P+ + + ++ I M +MY +GIGLAA Q+ + Y+ ++++ Sbjct: 3 IVPYPHPALRYPSVPVTRFDDELRGQIQAMFALMYENEGIGLAANQVALPYQFFILNISG 62 Query: 66 HAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + VFINP+I+ + +EGCLS P V R I VR D + Sbjct: 63 NPEQTELEQVFINPQILRK-QATAQDEEGCLSFPGLHGKVLRPRRIKVRAWDQYGVPFEL 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA +QHE DHL+G LFID S L R +KK+ Sbjct: 122 EADELLARAIQHEWDHLHGRLFIDKFSTLGRINASKKLKAF 162 >gi|299067454|emb|CBJ38653.1| Peptide deformylase [Ralstonia solanacearum CMR15] Length = 177 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ D L RV++P+ + ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRPILKMGDSRLLRVAKPVLRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP I SD EGCLS+P R V R + Sbjct: 61 FGFDRNDRYPDAPAVPKTVLINPTIEPLSDTMEDGWEGCLSVPGLRGVVPRYTRVRYTGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + A+G A +QHE DHL GIL+ + R T+ Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVQDFTRFGFTE 165 >gi|309389021|gb|ADO76901.1| peptide deformylase [Halanaerobium praevalens DSM 2228] Length = 150 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 95/153 (62%), Gaps = 5/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR ++ I+++N LIDNM E MY+ DG+GLAA QIG+L R+ V Sbjct: 1 MALLKVREIGDPVLRTKAKEIDEVNKKTNELIDNMFETMYAEDGVGLAAPQIGMLKRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+++ N ++ INP+II + ++ +EGCLSIP DV R+ I V+ ++ + Sbjct: 61 VDIRE----GNKVILINPEIIEK-EGKAIMEEGCLSIPGETGDVIRAEKIKVKSLNRKGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 A+G A +QHE+DHL+GILF+D + ++ Sbjct: 116 EVTFLAEGFEARAIQHEIDHLDGILFVDKIIKI 148 >gi|310828897|ref|YP_003961254.1| peptide deformylase [Eubacterium limosum KIST612] gi|308740631|gb|ADO38291.1| peptide deformylase [Eubacterium limosum KIST612] Length = 146 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+ +R I +IN I+ L +ML+ MY+ +G+GLAA Q+GVL +L+V Sbjct: 1 MAIRKMRVNDDPILRKKTREITEINDRIIELQKDMLDTMYAEEGVGLAAPQVGVLKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+I V +E CLS PD V+R F+TV Y D N Sbjct: 61 IDIGE-----GPVTLINPEITKQEGS-VVEEEACLSFPDRSGKVERPEFVTVEYTDLNGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + GL+A + HE+DHLNGI+F+D + + Sbjct: 115 RYEMECQGLMARAVCHEVDHLNGIVFLDRVIK 146 >gi|115379822|ref|ZP_01466890.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|310817741|ref|YP_003950099.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|115363181|gb|EAU62348.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|309390813|gb|ADO68272.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 168 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +VI+P +L ++P+ + L+ M E M GIG+AA Q+GV R+ + Sbjct: 1 MA-RDIVIWPHKVLTSATQPVMDFGPALEKLLAEMAESMAEAKGIGIAANQVGVSLRVAL 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +D +NP+++ S +EGCLS+P+ V R + VRY D Q Sbjct: 60 VGRED----GTFFEIVNPQLLERSG-KVTLEEGCLSVPEEWEKVPRFEKVKVRYQDKAGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+G LA QHE+DHL+G +F+DHLS LKR +I ++M+KL + + Sbjct: 115 WHETEAEGRLAHVFQHEIDHLDGHVFVDHLSNLKRTLIRERMNKLQKSQ 163 >gi|163941605|ref|YP_001646489.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|229013051|ref|ZP_04170216.1| Peptide deformylase [Bacillus mycoides DSM 2048] gi|229061470|ref|ZP_04198815.1| Peptide deformylase [Bacillus cereus AH603] gi|229134675|ref|ZP_04263484.1| Peptide deformylase [Bacillus cereus BDRD-ST196] gi|229168607|ref|ZP_04296330.1| Peptide deformylase [Bacillus cereus AH621] gi|163863802|gb|ABY44861.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|228615013|gb|EEK72115.1| Peptide deformylase [Bacillus cereus AH621] gi|228648721|gb|EEL04747.1| Peptide deformylase [Bacillus cereus BDRD-ST196] gi|228717893|gb|EEL69541.1| Peptide deformylase [Bacillus cereus AH603] gi|228748305|gb|EEL98165.1| Peptide deformylase [Bacillus mycoides DSM 2048] Length = 156 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTGKIE---LINPVILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ AD LA +QHE+DHL+G+LF + R Sbjct: 117 IFLLEADDFLARAIQHEIDHLHGVLFTSKVKR 148 >gi|303228554|ref|ZP_07315382.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a] gi|302516801|gb|EFL58715.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a] Length = 162 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PIL+ V+ P+E +N + LI++M + MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLEVVKAGHPILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D DHA + INP+II + + EGCLS+P Y DV+R +TV+ +D + + Sbjct: 61 VD--DHAGSG-LIALINPEII-HGEGSQIGLEGCLSVPGYFGDVERFEKVTVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +I ADG LA QHE+DHL G LFI+ + L+R Sbjct: 117 KVMIKADGFLARIFQHEIDHLEGHLFIEKATNLRR 151 >gi|320451483|ref|YP_004203579.1| peptide deformylase [Thermus scotoductus SA-01] gi|320151652|gb|ADW23030.1| peptide deformylase [Thermus scotoductus SA-01] Length = 191 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 14/180 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60 + P+ ++ DP+LR+ +RP++ + L ++MLE M+ G+GLAA QIG+ R V Sbjct: 1 MIYPIRLYGDPVLRKKARPVQDF-QGLKKLAEDMLETMFEARGVGLAAPQIGLSQRFFVA 59 Query: 61 -IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRAD-VKRSAFI 110 + + P+ V NP I + EGCLS+P A+ V R+ I Sbjct: 60 VEYADEPEGEERPLRDLARRIYVVANPVITHREGE-VEGLEGCLSLPGLYAEEVPRAERI 118 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS-KLVQLR 169 V Y D + + + +G +A QHE+DHL+GILF + L + KR+ ++ +L +++ Sbjct: 119 RVEYQDEEGRPRALELEGYMARVFQHEIDHLDGILFFERLPKAKREAFLEENRAELARMQ 178 >gi|187736350|ref|YP_001878462.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] gi|187426402|gb|ACD05681.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] Length = 182 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 16/180 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +P+L+ RP+E + + L +NMLE MY+ +GIGLAA Q+ + +LVVI Sbjct: 1 MLLEIAQYGNPVLKEKCRPVEHFDDSLKTLAENMLETMYAAEGIGLAAPQVSIPIQLVVI 60 Query: 62 DLQDHAHRKN---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 D+ P++F NP + + + EGCLS+ RA V R Sbjct: 61 DIPKEEESVTWLKVNGEDKELSDIMPLMFANPVLEPY-GPMHPFHEGCLSVMKIRASVVR 119 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 F+ + + + I +GLLA CLQHE DHLNGILF++ +S ++ + K+ +L Sbjct: 120 PDFVKATVLLIDGREITIDCNGLLARCLQHECDHLNGILFVERVSSAQKITLRNKLKRLA 179 >gi|88802639|ref|ZP_01118166.1| peptide deformylase [Polaribacter irgensii 23-P] gi|88781497|gb|EAR12675.1| peptide deformylase [Polaribacter irgensii 23-P] Length = 196 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 98/180 (54%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+VS I + D+ LI NM E MY+ G+GLAA QIG RL +I Sbjct: 1 MILPIIAYGDPVLRKVSEDIPEDYPDLDKLIHNMRETMYNASGVGLAAPQIGKAIRLFLI 60 Query: 62 DLQDHAHRKNP------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + VFIN +II + V+ EGCLSIPD R DV R Sbjct: 61 DASPFAEDEELSEKDRNVLKTFNKVFINAQIIAEEGEEWVFNEGCLSIPDVREDVSRQPV 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ++Y D N + +GL A QHE DH+ GILF D LS LK+ +I KK+ + + + Sbjct: 121 IKIKYQDENFKKHFETLEGLAARVFQHEYDHIEGILFTDKLSTLKKRIIKKKLENISKGK 180 >gi|300704236|ref|YP_003745839.1| peptide deformylase [Ralstonia solanacearum CFBP2957] gi|299071900|emb|CBJ43229.1| Peptide deformylase [Ralstonia solanacearum CFBP2957] Length = 177 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ D L RV++P+++ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP I SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + A+G A +QHE DHL GIL+ + R T+ Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVRDFSRFGFTE 165 >gi|159042736|ref|YP_001531530.1| peptide deformylase [Dinoroseobacter shibae DFL 12] gi|157910496|gb|ABV91929.1| peptide deformylase [Dinoroseobacter shibae DFL 12] Length = 168 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG----IGLAAVQIGVLYR 57 + +P + +PD LR + P+ +I +I + D+M++ M + G GLAA QIGV+ Sbjct: 1 MIRPFLSWPDARLRTPAAPVAEITDEIRTVWDDMIDTMEAMPGMGPGAGLAAPQIGVMQA 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 L V+D + R + NP+++ S ++E ++P A + R +TVR++D Sbjct: 61 LAVVDASE--ERGRAIRMANPQVLHASAQLRSHEEASPNLPGVFAKIDRPRAVTVRFLDA 118 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N + GL AT +QH++DHL G ++ D LS+ KRDM+ +K KL + Sbjct: 119 NGAVKEQDFVGLWATSVQHQIDHLAGRMYFDRLSKTKRDMLLRKARKLAR 168 >gi|108804305|ref|YP_644242.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941] gi|108765548|gb|ABG04430.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941] Length = 164 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + F DP+L+ + P++ + + L + M E M +G+GLAA Q+G L R+ V Sbjct: 1 MAL-EMRTFGDPVLKSRAAPVKTFDGALARLAEEMFETMREHEGVGLAANQVGRLKRIFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++D +V +NP I S+ +EGCLSIP R +V+R A + + + + Sbjct: 60 AEVEDRR-----LVVVNPAIEEASERTERAEEGCLSIPGVRVEVERPAAVVLTGQNLDGS 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A+GLLA LQHE DHL+G+L +D + R R +++ + Sbjct: 115 PLRIEAEGLLARVLQHETDHLDGVLILDRVDRETRRAALRELRE 158 >gi|88807213|ref|ZP_01122725.1| peptide deformylase [Synechococcus sp. WH 7805] gi|88788427|gb|EAR19582.1| peptide deformylase [Synechococcus sp. WH 7805] Length = 183 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 62/151 (41%), Positives = 91/151 (60%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + D +LR +R I K++ + +L +ML MY+ GIGLAA Q+GV +L+VI Sbjct: 11 APLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVHQQLLVI 70 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL P+V INP+II+ S Y+EGCLSIP DV R + + V + D + Sbjct: 71 DLDPETASSPPLVLINPEIISASASLDTYEEGCLSIPGVYLDVVRPSAVQVSFRDEMGRP 130 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 131 KTLKADGLMARCIQHEMDHLTGVLFVDRVTD 161 >gi|291458602|ref|ZP_06597992.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419135|gb|EFE92854.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262] Length = 169 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPIL + + I+ + LI +ML+ MY +G+GLAA Q+GVL R+ V Sbjct: 1 MALRSIRELGDPILEKECKEIKNVTERTRELIRDMLDTMYEANGVGLAAPQVGVLRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D V INP++ ++ EGCLS+P V R + V+ D + + Sbjct: 61 IDIGDEKR----YVCINPEVSVLGEELQTGPEGCLSVPGKEGTVTRPMRVHVKAKDIDFK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 A+GLLA + HE DHLNG+++ + RD++ Sbjct: 117 DYEFDAEGLLARAVSHENDHLNGVMYTTRVEGELRDVV 154 >gi|167586850|ref|ZP_02379238.1| peptide deformylase [Burkholderia ubonensis Bu] Length = 176 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L +++P+E+ + + L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEIAQPVERFDTPALNELVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INPK+ D EGCLS+P R V R A I Sbjct: 61 FGFGNNNRYPEAPPVPETVLINPKVEFMPPDMEEGWEGCLSVPGMRGVVSRYAKIRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D A+G A +QHE DHL G L+ ++ R T Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFT 164 >gi|17229499|ref|NP_486047.1| polypeptide deformylase [Nostoc sp. PCC 7120] gi|23396565|sp|Q8YVH1|DEF2_ANASP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|17131097|dbj|BAB73706.1| polypeptide deformylase [Nostoc sp. PCC 7120] Length = 179 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 6/168 (3%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++ +P LR+ + +E I ++ I LID+++ + +G+G+A+ Q+ YRL ++ Sbjct: 7 PIIQLGNPTLRQKAAWVENIHDATIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIVAS 66 Query: 64 QD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + HA P INPKI+ S + EGCLS+P R V R I V Y D Sbjct: 67 RPNPRYPHAPEMEPTAMINPKIVGHSTEIVEGWEGCLSVPGIRGLVPRHQAIEVEYTDRY 126 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q +A QHE DHL+G+LFID + + ++ +LV Sbjct: 127 GNLQKQTLTDFVARIFQHEFDHLDGVLFIDRVESNLNTITEEEYQELV 174 >gi|320096237|ref|ZP_08027821.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338] gi|319976818|gb|EFW08577.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338] Length = 163 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V P+ ++ + L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPVTEVTDSVRTLVEDLLEGVDMEGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NP I+ S D++ EGCLSIP+ KR+ + D + Sbjct: 61 YNIDGQIGY-----VLNPTIVELSEDEYQDGDEGCLSIPELWYPTKRAWYARCEGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + ++ + L+A C+QHE+DHLNG L+ID L R R + + Sbjct: 116 RPVVLEGEELMARCIQHEVDHLNGHLYIDRLERKVRKKALRDIR 159 >gi|154249636|ref|YP_001410461.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1] gi|154153572|gb|ABS60804.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1] Length = 170 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR+ ++P+ + + +I+ MY DG+GLAA Q+G+ R Sbjct: 1 MTVR---ILGDPVLRKKAQPVTDF-AQVRAIIEEFKLTMYEQDGVGLAAPQVGISLRFFG 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +NP+II S++ + +EGCLS+P ADV R +I VRY D + Sbjct: 57 MD-----DGSGFKMIVNPEIIEKSEEKELGEEGCLSVPGVFADVLRHKWIRVRYQDEHGT 111 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +G A QHE DHL+G+LFIDHL R + +++ K+++ Sbjct: 112 YHEELLEGYPARIFQHEYDHLDGVLFIDHLDSKTRTALAQQLKKIMEE 159 >gi|169631265|ref|YP_001704914.1| peptide deformylase [Mycobacterium abscessus ATCC 19977] gi|238688918|sp|B1MIN9|DEF_MYCA9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169243232|emb|CAM64260.1| Peptide deformylase [Mycobacterium abscessus] Length = 197 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++P+ + D+ LI NM E M + +G+GLAA QIGV Sbjct: 1 MAIVPIRIVGDPVLHTPTQPVPVGPDGSLPDDLPELIANMYETMDAANGVGLAANQIGVP 60 Query: 56 YRLVVIDLQDH--AHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 RL V D + ++ V INP +I D +EGCLS+P R+ Sbjct: 61 LRLFVYDCAETRGGGTRHRGVVINPVLETSEIPETMPDPDDDEEGCLSVPGESFPTGRAG 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + + + + L A LQHE HL+G L+ID L Sbjct: 121 WARVTGLDADGKEVTLEGNDLFARMLQHETGHLDGFLYIDKL 162 >gi|332975391|gb|EGK12285.1| peptide deformylase [Desmospora sp. 8437] Length = 173 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 95/151 (62%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M ++ +++F DPILR+ +RP+++I I L+D++ + +Y+ G LAA Q+G+L+R++ Sbjct: 1 MAERNILLFGDPILRKRARPVDQITPKIEKLLDDLADTLYAKPGRAALAAPQVGMLWRVI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID + + INP+I + V E CLS P Y VKR+ ++ V+ ++ + Sbjct: 61 VID-----GAEGLIELINPEIEESHGE-QVGPEACLSYPGYTGIVKRAKYVKVKTLNRHG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + + LA C+QHE+DHLNG+LFIDH+ Sbjct: 115 ETWFLEGENHLARCIQHEIDHLNGVLFIDHI 145 >gi|157412419|ref|YP_001483285.1| peptide deformylase [Prochlorococcus marinus str. MIT 9215] gi|157386994|gb|ABV49699.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9215] Length = 201 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 3/162 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + LR ++ I K++ D L ML+ MYS GIGLAA Q+G+ L+VID+ Sbjct: 32 EIYKLGSKTLRTTAKRISKVDIDTRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVIDIN 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ INP+I + + Y+EGCLSIP +V R + I +++ D + + + Sbjct: 92 FEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLS---RLKRDMITKKMS 163 ADGLLA C+QHE+DHL G+LF+D ++ LK+++I + Sbjct: 152 NADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELIKEGYK 193 >gi|72162832|ref|YP_290489.1| peptide deformylase [Thermobifida fusca YX] gi|71916564|gb|AAZ56466.1| peptide deformylase [Thermobifida fusca YX] Length = 185 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+P+V+F DP+L + PI N LI ++++ + + G+AA QIGV R Sbjct: 1 MTKRPIVLFGDPVLSTPAAPITTFNRHTEALIRDLMDTVDAPGRAGVAAPQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + INP+I+ S++ EGCLS+P R+ V+ +D Sbjct: 61 YRVDGQIGY-----VINPEIVELSEEIQEDGNEGCLSVPGLWYPTPRARRAVVKGVDLRN 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ++ G++A CLQHE DHL G L++D L R +++ + Sbjct: 116 EPVVVAGTGVMARCLQHETDHLAGKLYLDRLPPETRRAAMREIRR 160 >gi|207743249|ref|YP_002259641.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein [Ralstonia solanacearum IPO1609] gi|206594646|emb|CAQ61573.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein [Ralstonia solanacearum IPO1609] Length = 177 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ D L RV++P+++ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP I SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + A+G A +QHE DHL GIL+ + R T+ Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVRDFTRFGFTE 165 >gi|153815688|ref|ZP_01968356.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756] gi|317501925|ref|ZP_07960109.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088261|ref|ZP_08337180.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA] gi|145846929|gb|EDK23847.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756] gi|316896605|gb|EFV18692.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA] gi|330408505|gb|EGG87971.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA] Length = 166 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D IL + + + K+ LI +MLE MY ++G+GLAA Q+GVL R+VV Sbjct: 1 MAIRVIREIGDDILEKQCKAVPKMTLRTKILIGDMLETMYESNGVGLAAPQVGVLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+II S + +EGCLS+P V R + VR D N Sbjct: 61 IDVGE-----GPIVLINPQIIESSGE-QTGEEGCLSVPGKFGIVTRPDRVKVRAFDENMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA HELDHL+G L+++ Sbjct: 115 EFEMEGEGLLARAFCHELDHLDGKLYVE 142 >gi|23335172|ref|ZP_00120410.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|23466058|ref|NP_696661.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189439265|ref|YP_001954346.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|213691939|ref|YP_002322525.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227547307|ref|ZP_03977356.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621368|ref|ZP_04664399.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454248|ref|YP_003661391.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301] gi|317482866|ref|ZP_07941874.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|322689310|ref|YP_004209044.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis 157F] gi|322691322|ref|YP_004220892.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|39931156|sp|Q8G487|DEF2_BIFLO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|23326783|gb|AAN25297.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189427700|gb|ACD97848.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|213523400|gb|ACJ52147.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227212266|gb|EEI80162.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515829|gb|EEQ55696.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296183679|gb|ADH00561.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301] gi|316915711|gb|EFV37125.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|320456178|dbj|BAJ66800.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320458046|dbj|BAJ68667.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320460646|dbj|BAJ71266.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis 157F] Length = 162 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++LE + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + S + EGCLS+P +R+ + VR +D + Sbjct: 61 YNIDGKVGY-----VLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ GL+ LQHE DHL+G +++D L + +R + M Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEERREALRYMR 157 >gi|114327146|ref|YP_744303.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] gi|114315320|gb|ABI61380.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] Length = 209 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+L R + P+ + +I L +M+E M G+GLAA Q+ R+ Sbjct: 29 MSILKIARMGHPVLLRRADPVPDPTAPEIQRLALDMIETMIDAPGVGLAAPQVYQSLRMF 88 Query: 60 V--IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 V + + +P V INP++ D+ + EGCLSIP +R +V R+ + R + Sbjct: 89 VFRVPVSRGGEEVSPTVLINPELEWVGDEIQMCWEGCLSIPGFRGEVPRAMRVRYRGIGL 148 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + A G A +QHE DHL+GIL+ ++ L R +++ Sbjct: 149 DGAVIEREASGFHANVIQHEYDHLDGILYPMRMNDLGRLGFEEEI 193 >gi|303242018|ref|ZP_07328510.1| peptide deformylase [Acetivibrio cellulolyticus CD2] gi|302590436|gb|EFL60192.1| peptide deformylase [Acetivibrio cellulolyticus CD2] Length = 160 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 96/159 (60%), Gaps = 7/159 (4%) Query: 1 MVKKPLVIF-PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + + D +LR+ S+ +EKI+ I+NL+D+M E MY ++G+GLAA Q+G+L R+V Sbjct: 1 MALRQIRNYIDDDVLRKKSKVVEKIDEKILNLLDDMAETMYQSNGVGLAAPQVGILKRVV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + INP+II+ + EGCLS+PD +VKR+ + V+ +D Sbjct: 61 VIDVGE-----GLIKLINPQIISMEGEQQ-DIEGCLSVPDIIGEVKRANKVKVKAIDEKG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + GLLA HE+DHL+GILFID + + I Sbjct: 115 NSIELDGTGLLARAFCHEIDHLDGILFIDKIVNGTKKYI 153 >gi|328947001|ref|YP_004364338.1| peptide deformylase [Treponema succinifaciens DSM 2489] gi|328447325|gb|AEB13041.1| Peptide deformylase [Treponema succinifaciens DSM 2489] Length = 192 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 11/166 (6%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + +LR+ P+E ++N ++ ++ M E M S DG+GLAA Q+G+ R V+ Sbjct: 3 ICKLGEDVLRQKCVPVESNEVNDELRATLNEMFETMISADGVGLAAPQVGISKRFFVVIS 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D+ R VFINP+II S + S Y+EGCLS+P + R I+V +D N + + Sbjct: 63 DDNVRR----VFINPEIIKTSAENSEYEEGCLSLPGVSEKIVRPVKISVSAIDENGKRFV 118 Query: 124 IYA-DGLLATCLQHELDHLNGILFIDHLSRLKR----DMITKKMSK 164 + DGLLA +QHE DHLNGIL+ID + ++ KK + Sbjct: 119 LDDVDGLLARIIQHENDHLNGILYIDRGDEEFKNKTVELFKKKAER 164 >gi|229820291|ref|YP_002881817.1| peptide deformylase [Beutenbergia cavernae DSM 12333] gi|229566204|gb|ACQ80055.1| peptide deformylase [Beutenbergia cavernae DSM 12333] Length = 162 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+LR I I+ + L+D+++E + GLAA QIGV R Sbjct: 1 MAFRDIRVVGDPVLRTPCEEITVIDDRVRTLVDDLVETVDHEGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ D +NP+I+ S+D + EGCLS+P R+ + V D + Sbjct: 61 WNIDDEVGY-----VLNPRIVELSEDTYQDGDEGCLSVPGLWFPTNRAWYAKVVGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ L+A CLQHE+DHL+G+L+ID L R R + + Sbjct: 116 AEVVVEGTELMARCLQHEVDHLDGMLYIDRLERSVRKKAMRAIR 159 >gi|300087750|ref|YP_003758272.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527483|gb|ADJ25951.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 174 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 96/170 (56%), Gaps = 11/170 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR S+ I ++ I L+D+M+E M + +G GLAA Q+GV R +V Sbjct: 1 MPVRKIRIHPDPVLRIKSKKIPVVDRSIRELVDDMVETMQTNNGCGLAAPQVGVSLRCIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + P INP+I+ + + +E CLSIP A+V RS + V+ + + + Sbjct: 61 IGMPEQD----PFTIINPEIVKRRGERVI-EEACLSIPGVGAEVTRSLEVIVKGIGRDGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I LLA L+HE+DHLNG+LFID + +K+ K+ Q+ D Sbjct: 116 PLRIKGHDLLAQALEHEIDHLNGLLFIDRVDS------QEKLYKITQISD 159 >gi|239626559|ref|ZP_04669590.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516705|gb|EEQ56571.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 162 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +P++++ M LI++M E MY +G GLAA Q+GVL ++V Sbjct: 1 MAVRQIRIMGDDILTKKCKPVKEMTRRTMELIEDMFETMYEANGCGLAAPQVGVLKQIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D N V INP+II D EGCLS+P V R ++ V+ +D N + Sbjct: 61 IDVDD----GNQYVLINPEIIAQ-DGSQTGYEGCLSLPGKSGIVTRPNYVKVKALDENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA + HE+ HL G ++++ + Sbjct: 116 PFELEGEGLLARAICHEVAHLEGQMYVELVE 146 >gi|315604523|ref|ZP_07879586.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313535|gb|EFU61589.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] Length = 163 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V PI +I + L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPITEITPSVKALVEDLLEGVDMEGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NP+I+ S D++ EGCLS+PD KRS + D + Sbjct: 61 WNIDGDIGY-----VLNPRIVALSEDEYQDGDEGCLSVPDLWYPTKRSWYARCEGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ++ + L+A C+QHE DHL+G ++ID L R R + + Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRPTRKKALRDIRA 160 >gi|304316976|ref|YP_003852121.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778478|gb|ADL69037.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 159 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 69/161 (42%), Positives = 99/161 (61%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPIL + ++ +EKI+ I+ ++D+M E MYS DG+GLAA QIG+L RLVV Sbjct: 1 MALRYIRKIGDPILYKKAKHVEKIDDHILMILDDMAETMYSADGVGLAANQIGILRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP+II + + QEGCLS+P+ A+VKR I V+Y D N Sbjct: 61 VDVGD-----GLIELINPEII-LEEGEQIGQEGCLSVPNVTAEVKRPKKIKVKYQDRNGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + I + LA L HE+DHLNG+LF+D R+ + KK Sbjct: 115 IREIEGEDFLARALSHEIDHLNGVLFVDKAIRIINEDDEKK 155 >gi|32491245|ref|NP_871499.1| hypothetical protein WGLp496 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30172741|sp|Q8D258|DEF_WIGBR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|25166452|dbj|BAC24642.1| def [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 152 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 3/154 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P+ LR+++ I I+S+I +LI NMLE MY +GIGLAA Q+ V R++V Sbjct: 1 MSVLSILNYPNKKLRKIASNISLIDSEIKSLIKNMLETMYFNEGIGLAATQVDVHKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ P++ INP I ++EGCLSIP A V RS + ++ ++C + Sbjct: 61 IDISKNKNK--PLILINPVFINKCGA-QTFEEGCLSIPKKTAFVNRSKKVKIKAINCLGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ + GLLATC+QHE+DHL G LFID++ LK Sbjct: 118 EFLLKSKGLLATCIQHEMDHLIGKLFIDYIKPLK 151 >gi|298246394|ref|ZP_06970200.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] gi|297553875|gb|EFH87740.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] Length = 169 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 90/152 (59%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PILR+ ++ + + ++ + L+D+M E M++++G+GLAA QI + R+ V Sbjct: 1 MAMRQIITSENPILRQKAKKVHRFDASLQKLVDDMFETMHASNGVGLAAPQIALSIRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDCNA 119 + + NP+I+ + QEGCLSIP Y +++R+A I V+ +D Sbjct: 61 -----AEYEGRRVAIFNPEIVKAEGE-ERGQEGCLSIPGYLGNNIRRAAKIVVKGVDVKG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + A+G A LQHE+DHL+GILF+D L Sbjct: 115 KPVRVNAEGWFARILQHEIDHLDGILFLDRLD 146 >gi|206901011|ref|YP_002251154.1| peptide deformylase [Dictyoglomus thermophilum H-6-12] gi|238058219|sp|B5YF46|DEF_DICT6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|206740114|gb|ACI19172.1| peptide deformylase [Dictyoglomus thermophilum H-6-12] Length = 153 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 6/148 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DPIL+ ++ +EKI+ + L +M+E M +G+GLAA Q+G R++V+ Sbjct: 1 MIREIRKVGDPILKTKAKKVEKIDEKVKELARDMIETMKFCNGVGLAAPQVGESLRIIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D +D NP+V INP+II S + Y EGCLS+P VKR+ I + D + + Sbjct: 61 DYED-----NPIVLINPEIIEMSGEELDY-EGCLSVPGVEVPVKRAERIVFKAQDLDGRT 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDH 149 + A GLLA +QHE+DHL+G+L +D Sbjct: 115 KKYRAKGLLARVVQHEVDHLDGMLILDR 142 >gi|271968555|ref|YP_003342751.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270511730|gb|ACZ90008.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 162 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 11/155 (7%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + + DP+LR + P+ + D+ LID M + MY+ G+GLA QIGV R+ V D Sbjct: 2 RDIRVVGDPVLRTPAEPVVDFDRDLRRLIDEMFDAMYAAQGVGLAGPQIGVSKRVFVYDC 61 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD------YRADVKRSAFITVRYMDC 117 INP + D + +EGCLS+P A R+A +TVR +D Sbjct: 62 SSRKG-----HLINPVLTVDDDAEILDEEGCLSVPGRDTGTPIYARTPRAAGVTVRGLDR 116 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I A GLLA C QHE DHL G+L++D L++ Sbjct: 117 LGRPVQIRARGLLARCFQHETDHLEGMLYVDRLAK 151 >gi|289705546|ref|ZP_06501938.1| peptide deformylase [Micrococcus luteus SK58] gi|289557775|gb|EFD51074.1| peptide deformylase [Micrococcus luteus SK58] Length = 191 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ PDP+LR + P+ +D+ L+ +M+ M++ G+GLAA Q+GV R+ V Sbjct: 1 MTVLPVRTVPDPVLRTAASPV-PAGADVRALVTDMIATMHAVGGVGLAAPQVGVGLRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ A +NP + T EGCLS+P R R+A VR D + Sbjct: 60 FDVAGVAG-----HVVNPVLETAGQALREPGEGCLSVPGLRYHPARAAEAVVRGTDVDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 GLLA CLQHE DHL+GIL++D L Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRLD 145 >gi|269302867|gb|ACZ32967.1| peptide deformylase [Chlamydophila pneumoniae LPCoLN] Length = 186 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+ S PI +I +I NL+ +M + M + G+GLAA Q+G L V+ Sbjct: 1 MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 60 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + P VFINP + S+ + +EGCLSIP R +V R ITV M Sbjct: 61 CVDRETEDGELIFSESPRVFINPVLSDPSETLIIGKEGCLSIPGLRGEVFRPQKITVTAM 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-RDMITKKMSKLVQ 167 D N + + +G A + HE DHLNG+L+ID + K + K+ + Sbjct: 121 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 173 >gi|299143971|ref|ZP_07037051.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518456|gb|EFI42195.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 158 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR++SR + K + + LI++M E M +G+GLAA Q+GVL R++ Sbjct: 1 MAYRVIRTDDDPVLRKISREVVKFDDRLKTLIEDMYETMDKAEGVGLAAPQVGVLRRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++ INP+II S + EGCLS+P+ + VKR I V+Y+D N + Sbjct: 61 VD----DRTEHRFALINPEIIFESG-TQLGYEGCLSLPNKQGKVKRFNEIKVKYLDENGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + I A LA LQHE+DHLNGIL+ D Sbjct: 116 KKEIEAKEYLARILQHEIDHLNGILYSD 143 >gi|253999126|ref|YP_003051189.1| peptide deformylase [Methylovorus sp. SIP3-4] gi|253985805|gb|ACT50662.1| peptide deformylase [Methylovorus sp. SIP3-4] Length = 177 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P++ DP+L + + P+ + ++ LI +M + M +G G+AA QIGV R+V Sbjct: 1 MPIRPVLRMGDPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + A + V +NP + +DD EGCLS+P R V R + Sbjct: 61 IFGVGKNPRYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPRYVRLHYTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D G A +QHE DHL+GIL+ + L Sbjct: 121 FDQYGNPIDRLVSGFHARVVQHECDHLDGILYPMRIRDL 159 >gi|46446437|ref|YP_007802.1| peptide deformylase [Candidatus Protochlamydia amoebophila UWE25] gi|46400078|emb|CAF23527.1| putative polypeptide deformylase [Candidatus Protochlamydia amoebophila UWE25] Length = 176 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 5/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K PL + D +LR+ I +IN I L+ +M+E M + DG GLAA Q+ L + Sbjct: 1 MKLPLAYYGDSVLRKKGSQIAEINDTIKQLVQDMIETMEANDGCGLAAPQVHQSLSLFIT 60 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + D VFINPKI+++S + QE CLSIP R V R +T++ D Sbjct: 61 CIPQYLENDQVIPGQVRVFINPKILSYSQEVWACQEACLSIPGMRETVSRPLKVTIQATD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N G A + HE DH+NG+L+ID L ++ I K + ++ + Sbjct: 121 LNGHTFTEEFAGFDAHVIMHENDHVNGVLYIDRLPSKRKKGIEKFLREIKK 171 >gi|119383397|ref|YP_914453.1| peptide deformylase [Paracoccus denitrificans PD1222] gi|119373164|gb|ABL68757.1| peptide deformylase [Paracoccus denitrificans PD1222] Length = 166 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 95/167 (56%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + + D L + P+ I + + D+M++ M + G+GLAA QIG++ RL V Sbjct: 1 MTVRPFLPYADRRLHLPAEPVPAITETVRMIWDDMIDTMEAMPGVGLAAPQIGIMQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+++ S ++E ++P A ++R +TVR+++ + + Sbjct: 61 VDASEK--RGQAVRMANPEVLHASVQLRAHEEASPNLPGVSARIERPRAVTVRFLNADGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GL AT +QH++DHLNG L++D+LS L+R M+ K +K + Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGRLYVDYLSPLRRKMLVAKSAKFAR 165 >gi|121998191|ref|YP_001002978.1| peptide deformylase [Halorhodospira halophila SL1] gi|121589596|gb|ABM62176.1| peptide deformylase [Halorhodospira halophila SL1] Length = 162 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PDP LR+ S P+E+ + + L+D+M+E M++ IGLAA Q+ V R+VV Sbjct: 1 MATLEILEHPDPRLRQPSAPVERFDQALCELVDDMIETMHARSAIGLAAPQVDVRQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P VFINP+I S +E CLS+P + V+R ++VR D + Sbjct: 61 CCTEPA---QAPRVFINPEITGSS-LPGYIEESCLSVPGQQGLVRRPTRVSVRAQDTAGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + L A CL HE+DHL+G LFID L KR I Sbjct: 117 RFHCKLENLDAVCLHHEIDHLDGTLFIDRLPFWKRLKI 154 >gi|303232127|ref|ZP_07318830.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6] gi|302513233|gb|EFL55272.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6] Length = 162 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PIL+ V+ P+E +N + LI++M + MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLEVVKAGHPILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D DHA + INP+II + + EGCLS+P Y DV+R +TV+ +D + + Sbjct: 61 VD--DHAGSG-LIALINPEII-HGEGSQIGLEGCLSVPGYFGDVERFEKVTVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +I A+G LA QHE+DHL G LFI+ + L+R Sbjct: 117 KVMIKAEGFLARIFQHEIDHLEGHLFIEKATNLRR 151 >gi|147678126|ref|YP_001212341.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum SI] gi|189083075|sp|A5D1C0|DEF_PELTS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146274223|dbj|BAF59972.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum SI] Length = 155 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 90/155 (58%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V D IL+ ++ + KIN +I+ L+DNM E MY G+GLAA QIGV R++V Sbjct: 1 MAVYKIVELGDRILKERAKEVPKINQNIIKLLDNMAETMYHARGVGLAAPQIGVSKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INP I + + EGCLSIP DV R++ I V+ +D + Sbjct: 61 VDVGE-----GLLEMINPVITSCAG-HETDSEGCLSIPGIVGDVTRASVIEVKGLDRRGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A G LA LQHE+DHL+GILFI+ +++ Sbjct: 115 PLEVKAKGYLARALQHEIDHLDGILFIEKAKNIRK 149 >gi|329943974|ref|ZP_08292243.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386] gi|328531407|gb|EGF58249.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386] Length = 163 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+LR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NPKI+ S D++ EGCLS+P +R+ + D N Sbjct: 61 WNIDGEIGY-----ILNPKIVELSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGTDLNG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ++ + L+A C+QHE DHL G L++D L R R K++ Sbjct: 116 KEVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAAAMKELRA 160 >gi|307128595|ref|YP_003880625.1| peptide deformylase [Candidatus Sulcia muelleri CARI] gi|306483057|gb|ADM89927.1| peptide deformylase [Candidatus Sulcia muelleri CARI] Length = 172 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 98/162 (60%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++I+ +PILR+ I++ +I LI NM + MY GIGL+A QIG+ RL +I Sbjct: 1 MILPILIYGNPILRKKCIEIDQSYQNINLLIKNMYDTMYKAKGIGLSAPQIGLSIRLFII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + +K VFINPKII + +EGCLSIP+ ++KR + + Y D N + Sbjct: 61 EYNNFYKKKFKKVFINPKIIKNYGYDLISKEGCLSIPNIIENIKRKNNLIIEYYDENWKK 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +GLL+ +QHE DH++G LFIDH+S +K +I K+ Sbjct: 121 YRQHFNGLLSIIIQHEYDHIDGKLFIDHISDMKNILIKNKLK 162 >gi|187477209|ref|YP_785233.1| peptide deformylase [Bordetella avium 197N] gi|115421795|emb|CAJ48306.1| peptide deformylase [Bordetella avium 197N] Length = 177 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV+ P+E+ S ++ LID+M + M G+GLAA QIGV +LV+ Sbjct: 1 MIHSILKMGDPRLLRVAAPVERFGSAELKQLIDDMFDTMAYAHGVGLAAPQIGVDLQLVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + + V NP I SD+ EGCLS+P R V R +I + Sbjct: 61 FGFERNPRYPDAPAVPKTVLCNPVITPLSDEMEDGWEGCLSVPGLRGLVPRYQYIRYQGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A G A +QHE DHL G L+ + + T Sbjct: 121 APDGTAIDREASGFHARVVQHECDHLIGRLYPSRIQDFSKFGFT 164 >gi|33603069|ref|NP_890629.1| peptide deformylase [Bordetella bronchiseptica RB50] gi|39931041|sp|Q7WG25|DEF2_BORBR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|33568700|emb|CAE34458.1| peptide deformylase [Bordetella bronchiseptica RB50] Length = 176 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV+ P+E+ + ++ LID+M E M G+GLAA QIGV +LV+ Sbjct: 1 MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + + + NP I S + EGCLS+P R V R I Sbjct: 61 FGFERNDRYPDAPAVPRTILCNPVIEPLSGEMEDGWEGCLSVPGLRGLVPRYRHIRYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A+G A +QHE DHL G L+ + L + T+ + Sbjct: 121 DPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTKFGYTEVL 167 >gi|229019065|ref|ZP_04175903.1| Peptide deformylase [Bacillus cereus AH1273] gi|229025309|ref|ZP_04181728.1| Peptide deformylase [Bacillus cereus AH1272] gi|228736000|gb|EEL86576.1| Peptide deformylase [Bacillus cereus AH1272] gi|228742233|gb|EEL92395.1| Peptide deformylase [Bacillus cereus AH1273] Length = 156 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDIDDDTGKIE---LINPVILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A LA +QHE+DHL+G+LF ++R Sbjct: 117 IFLLEAKDFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|183220960|ref|YP_001838956.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911055|ref|YP_001962610.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238687791|sp|B0SHH1|DEF_LEPBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687819|sp|B0SQM2|DEF_LEPBP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167775731|gb|ABZ94032.1| N-formylmethionyl-tRNA deformylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779382|gb|ABZ97680.1| Peptide deformylase (PDF; Polypeptide deformylase) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 179 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ +PILR+ S + + D LI +M E M DG+GLAA QIGVL + Sbjct: 1 MAVRKILKIGNPILRQTSEDVSESEIQTKDFKKLIRDMFETMRHADGVGLAAPQIGVLKK 60 Query: 58 LVVIDLQDHAHR--KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 LVV+ +D R P V +NP+I S + EGCLS+P R V+R I Sbjct: 61 LVVVGQEDDNERYPGTPEVPNQIILNPEITPLSPPRDGFWEGCLSVPGMRGYVERPNKIR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +++ D N +G A LQHE DHL G+L++D L K Sbjct: 121 MKWRDENYVEHDEIIEGYRAIVLQHECDHLFGVLYVDRLKSTK 163 >gi|238026898|ref|YP_002911129.1| peptide deformylase [Burkholderia glumae BGR1] gi|237876092|gb|ACR28425.1| Peptide deformylase [Burkholderia glumae BGR1] Length = 177 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V++P+E + + L+ +M E M+ +G GLAA QIGV +L++ Sbjct: 1 MIREILRMGDPRLLDVAKPVEAFDTPALHELVADMFETMHHANGAGLAAPQIGVGLQLII 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++A + V INP I D EGCLS+P R V R + Sbjct: 61 FGFGNNARYPDAPAVPETVLINPSIEYLPPDMEEGWEGCLSVPGMRGVVSRYRKVHYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D + A+ A +QHE DHL G L+ ++ + T Sbjct: 121 DQYGKRIDRIAEDFHARVVQHEYDHLIGKLYPMRITDFSKFGFT 164 >gi|222824460|ref|YP_002576034.1| peptide deformylase [Campylobacter lari RM2100] gi|222539681|gb|ACM64782.1| peptide deformylase [Campylobacter lari RM2100] Length = 173 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 4/159 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S +E + D+ L+D+M E M G+GLAA+Q+ V R +++ Sbjct: 1 MIRKIITYPNPRLFLESEKVENFDKDLHVLLDDMYETMIENKGVGLAAIQVDVPIRALLV 60 Query: 62 DLQDHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D+ D ++ + INP I D+ EGCLSIP + DV R I + Y D Sbjct: 61 DIGDEEGEQKDKQTLLEIINPIITPLDDEKISCNEGCLSIPGFYEDVMRYKNIQLDYQDR 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + Q + A LA +QHE+DHL+G LFI+ LS LKR Sbjct: 121 FGKPQSLQAHDFLAVAIQHEVDHLDGHLFIEKLSFLKRQ 159 >gi|56698049|ref|YP_168420.1| peptide deformylase [Ruegeria pomeroyi DSS-3] gi|56679786|gb|AAV96452.1| peptide deformylase [Ruegeria pomeroyi DSS-3] Length = 165 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +I + +M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTVRRCLPWPDKHLRTRAAEVSEITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+I+ S + + E ++P A +KR +TVR+++ Q Sbjct: 61 VD--GSSERGRAVRLANPEILHASIELREHDEASPNLPGVSAKLKRPRAVTVRFLNEQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K KL Sbjct: 119 VDRRDFVGIEATSVQHQIDHLNGRMYFDNLSKVKRDMLLRKARKL 163 >gi|116787193|gb|ABK24406.1| unknown [Picea sitchensis] Length = 290 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 85/162 (52%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PD LR ++PI + + L D M ++MY TDG+GL+A Q+GV +L+V + Sbjct: 111 IVKYPDSRLRAKNKPINIFDEKLQRLADEMFDLMYKTDGVGLSAPQVGVNVQLMVFNPAG 170 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + ++ +NP+I +S V+ EGCLS P+ ADV+R + + D + I+ Sbjct: 171 ESGKGEEVILVNPEIYKYSKRKEVFTEGCLSFPEIYADVERPMSVKIEAWDVKGKKFILS 230 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A QHE DHL ILF + + + I + L Q Sbjct: 231 LKEFNARIFQHEYDHLQRILFFERMHPDILETIRPALQDLEQ 272 >gi|157165463|ref|YP_001465989.1| peptide deformylase [Campylobacter concisus 13826] gi|112801795|gb|EAT99139.1| peptide deformylase [Campylobacter concisus 13826] Length = 172 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 4/160 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L +S+ +E + + L+D+M E M + +GIGLAA+QIGV R+ +I Sbjct: 1 MILEVLSYPNKKLYEISKEVEVFDEKLHKLLDDMYETMIAKEGIGLAAIQIGVAKRIFII 60 Query: 62 DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L + ++N + INPK + VYQEGCLS+P Y DVKRS + +++ D Sbjct: 61 NLANEEGVQDKENLIEIINPKF-ELREGECVYQEGCLSVPGYYEDVKRSEVVAIKFQDRF 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + Q + DGLLA +QHE DHL+G LFI+ + KR Sbjct: 120 GKEQTLKTDGLLAIAIQHENDHLDGHLFIEKIGFNKRKKF 159 >gi|33242441|ref|NP_877382.1| peptide deformylase [Chlamydophila pneumoniae TW-183] gi|33236952|gb|AAP99039.1| polypeptide deformylase [Chlamydophila pneumoniae TW-183] Length = 204 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+ S PI +I +I NL+ +M + M + G+GLAA Q+G L V+ Sbjct: 19 MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 78 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + P VFINP + S+ + +EGCLSIP R +V R ITV M Sbjct: 79 CVDRETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAM 138 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-RDMITKKMSKLVQ 167 D N + + +G A + HE DHLNG+L+ID + K + K+ + Sbjct: 139 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 191 >gi|89052959|ref|YP_508410.1| formylmethionine deformylase [Jannaschia sp. CCS1] gi|88862508|gb|ABD53385.1| formylmethionine deformylase [Jannaschia sp. CCS1] Length = 164 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P V +PD LR ++ + + + +M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MPIRPFVPYPDKRLRTMAETVGPVTDAHREIWQDMIDTMDAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R + +P+II+ SD+ + Y EG ++P A + R A +TV + D Sbjct: 61 VDASD--DRGQAIRMADPEIISASDEMNTYPEGSPNLPGVTAKITRPARVTVAFTDHMGL 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L AT +QH++DHL G +++DHLSR KR+M+ KK + Sbjct: 119 RVRQEFVDLWATSVQHQIDHLAGKVYVDHLSRTKREMVIKKSRR 162 >gi|306822699|ref|ZP_07456077.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|309800930|ref|ZP_07695062.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] gi|304554244|gb|EFM42153.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|308222466|gb|EFO78746.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] Length = 161 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR PI++I + +L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + S + EGCLS+P +R+ + VR +D + Sbjct: 61 YNIDGKIGY-----VLNPVLEETSGE-QYGDEGCLSVPGLWYKTRRADYAQVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ G++ LQHE DHL+G +++D L + +R + M Q Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRNHRQ 161 >gi|237786237|ref|YP_002906942.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385] gi|237759149|gb|ACR18399.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385] Length = 220 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 24/187 (12%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L + P+ + +I L+ +M E + + G+GLAA QIGV RL V Sbjct: 11 MTVRPIVIAGDPVLHNPTEPVTESPEEIAELVADMYETLELSHGVGLAANQIGVAKRLFV 70 Query: 61 IDLQD----------------HAHRKNPMVFINPKIITFSDDFSVYQ-------EGCLSI 97 D D + +NP + S+ EGCLS+ Sbjct: 71 YDCPDIEGPDGDSKSEEELKAQGGPRRKGCVVNPVL-ETSEIPETMPATDGSDAEGCLSV 129 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 P R+ + V D + + + G A CLQHE+ HL+G L+ D L M Sbjct: 130 PGLDFPTGRAHWARVTGTDEHGEPVRVEGYGFFARCLQHEVGHLDGYLYTDMLIGRWARM 189 Query: 158 ITKKMSK 164 KK+ + Sbjct: 190 AKKKIKR 196 >gi|257124971|ref|YP_003163085.1| peptide deformylase [Leptotrichia buccalis C-1013-b] gi|257048910|gb|ACV38094.1| peptide deformylase [Leptotrichia buccalis C-1013-b] Length = 172 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 91/162 (56%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ P LR+ S ++ ++ ++ +D M+ +M +G+GLAA Q+ + R V++ Sbjct: 3 IVLYGHPTLRQKSEKVDVVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLEHDG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + INP+I+ FSD+ +EGCLSIP V R A I V+Y++ N + + Sbjct: 63 VVKK-----VINPEILEFSDEIVDMEEGCLSIPGVFKKVNRPAKIKVKYLNENGKEVVEE 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + + QHE DH+ GILF D LS + + ++ KK+ L + Sbjct: 118 LEEMWSRAFQHEFDHIEGILFTDKLSVMNKRLVAKKLDVLKR 159 >gi|154487371|ref|ZP_02028778.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis L2-32] gi|154083889|gb|EDN82934.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis L2-32] Length = 161 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR PI++I + +L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + S + EGCLS+P +R+ + VR +D + + Sbjct: 61 YNIDGKIGY-----VLNPVLEETSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ G++ LQHE DHL+G +++D L + +R + M + Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRTHRK 161 >gi|241662938|ref|YP_002981298.1| peptide deformylase [Ralstonia pickettii 12D] gi|240864965|gb|ACS62626.1| peptide deformylase [Ralstonia pickettii 12D] Length = 177 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV++P+E+ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP I S+D EGCLS+P R V R + Sbjct: 61 FGFDRNDRYPDAPAVPKTVLINPTIEPLSNDMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A+G A +QHE DHL G+L+ + R T+ + Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTRFGFTEVL 167 >gi|186686636|ref|YP_001869832.1| peptide deformylase [Nostoc punctiforme PCC 73102] gi|186469088|gb|ACC84889.1| peptide deformylase [Nostoc punctiforme PCC 73102] Length = 190 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 7/163 (4%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++ +P LR+ + +E I + I LI++++ + +G+G+AA Q+ YRL ++ Sbjct: 20 PIIQLGNPTLRQKAVWVENIQDKHIQKLIEDLIATVAKANGVGIAAPQVAQSYRLFIVAS 79 Query: 64 QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + +A N P INPKII S + EGCLS+P R V R I V Y DC Sbjct: 80 RPNARYPNAPEMEPTAMINPKIIAHSTEVVKDWEGCLSVPGIRGLVPRYKSIEVEYTDCQ 139 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 Q +A QHE DHL+GI+F+D L DMIT++ Sbjct: 140 GNLQKQELTDFIARIFQHEYDHLDGIVFVDRLESTL-DMITEQ 181 >gi|256845417|ref|ZP_05550875.1| peptide deformylase [Fusobacterium sp. 3_1_36A2] gi|256718976|gb|EEU32531.1| peptide deformylase [Fusobacterium sp. 3_1_36A2] Length = 174 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 102/169 (60%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ Sbjct: 1 MVYEIKKYGEDVLKQIAKEVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D + RK INP ++ +++ ++EGCLS+P V+R + ++Y++ N Sbjct: 61 VCDDGNGVVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILFI+ +S + + +I KK++ + + Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANMKKE 165 >gi|15618975|ref|NP_225261.1| peptide deformylase [Chlamydophila pneumoniae CWL029] gi|15836598|ref|NP_301122.1| peptide deformylase [Chlamydophila pneumoniae J138] gi|16753049|ref|NP_445322.1| peptide deformylase [Chlamydophila pneumoniae AR39] gi|6225254|sp|Q9Z6J2|DEF_CHLPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|4377403|gb|AAD19204.1| Polypeptide Deformylase [Chlamydophila pneumoniae CWL029] gi|7189698|gb|AAF38582.1| polypeptide deformylase [Chlamydophila pneumoniae AR39] gi|8979440|dbj|BAA99274.1| polypeptide deformylase [Chlamydophila pneumoniae J138] Length = 186 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+ S PI +I +I NL+ +M + M + G+GLAA Q+G L V+ Sbjct: 1 MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 60 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + P VFINP + S+ + +EGCLSIP R +V R ITV M Sbjct: 61 CVDRETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAM 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-RDMITKKMSKLVQ 167 D N + + +G A + HE DHLNG+L+ID + K + K+ + Sbjct: 121 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 173 >gi|78183988|ref|YP_376423.1| peptide deformylase [Synechococcus sp. CC9902] gi|123743565|sp|Q3AZU8|DEF_SYNS9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78168282|gb|ABB25379.1| peptide deformylase [Synechococcus sp. CC9902] Length = 201 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + LR+ ++ I K+N + L +ML MY+ GIGLAA Q+ V +L+VIDL Sbjct: 32 EIHTLGADALRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDLD 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP+I S Y+EGCLSIP DV R I + Y D + + + Sbjct: 92 LENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGL+A C+QHE+DHLNG+LF+D ++ + + K++ + Sbjct: 152 KADGLMARCIQHEMDHLNGVLFVDRVTD--QAGLQKELKE 189 >gi|282856366|ref|ZP_06265645.1| peptide deformylase [Pyramidobacter piscolens W5455] gi|282585737|gb|EFB91026.1| peptide deformylase [Pyramidobacter piscolens W5455] Length = 159 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 6/163 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ +V FPDP+LRR +RP+ + + +D M VM DG+G+AA Q+GV ++ V+ Sbjct: 1 MQLKIVEFPDPVLRRATRPVTVFDEALKTFVDEMTIVMKDDDGVGIAAPQVGVSKKVAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + V +NP I+ + +EGCLS P +V+R+ + V D Sbjct: 61 CFEG-----ERYVLVNPVIVEATG-TQRGEEGCLSFPGIFGEVERAERVVVECQDETGAK 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A+G +A QHE++HL G L IDH S +KR++I K++ K Sbjct: 115 RRHEAEGFVARAFQHEIEHLEGKLLIDHFSPMKRELIRKRLMK 157 >gi|260887303|ref|ZP_05898566.1| peptide deformylase [Selenomonas sputigena ATCC 35185] gi|330838943|ref|YP_004413523.1| peptide deformylase [Selenomonas sputigena ATCC 35185] gi|260862939|gb|EEX77439.1| peptide deformylase [Selenomonas sputigena ATCC 35185] gi|329746707|gb|AEC00064.1| peptide deformylase [Selenomonas sputigena ATCC 35185] Length = 155 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 96/160 (60%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P+L+ + P+E++++ + L+D+M E MY +GIG+AA Q+G R+VV Sbjct: 1 MSLLEIKKAGAPVLKEICAPVERVDARLRKLLDDMAETMYEANGIGIAAPQVGEALRMVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + +NPKI TF + EGCLS+P +V+R+A + V ++D + Sbjct: 61 IDIGDGI-----IELVNPKI-TFREGSETDSEGCLSVPGIFGEVERAAKVKVEFLDRRGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + I A GLLA C+QHELDHL G+LFID L+++ K Sbjct: 115 RKHITAKGLLARCIQHELDHLEGVLFIDVAQSLRKEEEQK 154 >gi|302867673|ref|YP_003836310.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315505926|ref|YP_004084813.1| peptide deformylase [Micromonospora sp. L5] gi|302570532|gb|ADL46734.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315412545|gb|ADU10662.1| peptide deformylase [Micromonospora sp. L5] Length = 167 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 7/162 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62 +P+ I DP+LR S P+ ++++ L+ ++++ + G G+AA QIGV ++ V D Sbjct: 2 RPIRIIGDPVLRTPSEPVTSFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVNAQVFVYD 61 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 H INP + SD+ +EGCLSIP R+ T D + + Sbjct: 62 ADGHRG-----HMINPTL-EVSDELQDDEEGCLSIPGLYFPTPRALHATAHGYDQHGEPL 115 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G LA LQHE DHL G L++D L R +++ Sbjct: 116 TVTGSGFLARALQHETDHLRGRLYVDTLRGDTRRRALREIRA 157 >gi|312132641|ref|YP_003999980.1| def1 [Bifidobacterium longum subsp. longum BBMN68] gi|311773592|gb|ADQ03080.1| Def1 [Bifidobacterium longum subsp. longum BBMN68] Length = 162 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++LE + GL+A QIGV R Sbjct: 1 MSIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + S + EGCLS+P +R+ + VR +D + Sbjct: 61 YNIDGKVGY-----VLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ GL+ LQHE DHL+G +++D L + +R + M Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEERREALRYMR 157 >gi|167563193|ref|ZP_02356109.1| peptide deformylase [Burkholderia oklahomensis EO147] Length = 177 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L V++P+E N ++ L+ +M E M+ +G GLAA Q+GV ++++ Sbjct: 1 MIREILKMGDQRLLEVAKPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP + D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D + A+G A +QHE DHL G L+ ++ + T Sbjct: 121 DQFGEKLERVAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGFT 164 >gi|110678659|ref|YP_681666.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114] gi|109454775|gb|ABG30980.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114] Length = 165 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 98/165 (59%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +++ + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MSVRAYLKWPDARLRTAAADVAEITPEVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R+ + NP+II S + ++E ++P A ++R +TVR+MD Sbjct: 61 VDASDTRDRR--IRLANPEIIEASAIMNDHEEASPNLPGVFAKIRRPRGVTVRFMDETGT 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL G ++ D+LS++KRDM+ +K KL Sbjct: 119 YVQRDFVGLEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163 >gi|321472939|gb|EFX83908.1| hypothetical protein DAPPUDRAFT_47755 [Daphnia pulex] Length = 166 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 69/152 (45%), Positives = 101/152 (66%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P P+L R S PI+ I++ I +D+MLE MY++ GIGLAA+Q+G+L R++V Sbjct: 1 MAVLKIVEEPSPLLHRTSLPIKTIDATIHKALDDMLETMYASSGIGLAAIQVGLLKRMLV 60 Query: 61 IDLQDHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 IDL + + P+ INP+I+ SD+ + + EGCLS+P + ++ R A I VRY D Sbjct: 61 IDLGEASESDTWAGKPLKIINPQILWTSDNQNTFNEGCLSVPQHYVEISRPAEIKVRYQD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID 148 ++ I+A GLLATCLQHE+DHLNGI ++ Sbjct: 121 ETGKYHEIHAAGLLATCLQHEIDHLNGITILN 152 >gi|224283170|ref|ZP_03646492.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171] gi|311064448|ref|YP_003971173.1| peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313140319|ref|ZP_07802512.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171] gi|310866767|gb|ADP36136.1| Def Peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313132829|gb|EFR50446.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171] Length = 162 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + PDP+LR I +I + L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRTVPDPVLRTPCETIREITPSVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + S + EGCLS+P +R+ + VR +D + Sbjct: 61 YNINGKIGY-----VLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++ GL+ LQHE DHL+G +++D L + +R + M + Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMREHA 160 >gi|121594637|ref|YP_986533.1| peptide deformylase [Acidovorax sp. JS42] gi|222110774|ref|YP_002553038.1| peptide deformylase [Acidovorax ebreus TPSY] gi|120606717|gb|ABM42457.1| peptide deformylase [Acidovorax sp. JS42] gi|221730218|gb|ACM33038.1| peptide deformylase [Acidovorax ebreus TPSY] Length = 179 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV++P+ + + L+++M E M + +G GLAA QIG +++V Sbjct: 1 MTIRTILKMGDPRLLRVAQPVTAFDTPALHQLVNDMRETMQAVNGAGLAAPQIGEDWQVV 60 Query: 60 VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + R P V INP I D EGCLS+P R V R A I R Sbjct: 61 IFGSGERNPRYPDRPIVPPTVLINPVITPLGADEEDDWEGCLSVPGLRGKVPRFARIHYR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D A+G A +QHE DHL G L+ + + T+ + Sbjct: 121 GVDLLGAPIDRVAEGFHARVVQHECDHLIGKLYPMRVRDFTQFGYTEVL 169 >gi|33591309|ref|NP_878953.1| peptide deformylase [Bordetella pertussis Tohama I] gi|33598175|ref|NP_885818.1| peptide deformylase [Bordetella parapertussis 12822] gi|39931029|sp|Q7W0Q0|DEF1_BORPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|39931034|sp|Q7W4K0|DEF2_BORPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|33566733|emb|CAE38944.1| peptide deformylase [Bordetella parapertussis] gi|33570951|emb|CAE40418.1| peptide deformylase [Bordetella pertussis Tohama I] gi|332380711|gb|AEE65558.1| peptide deformylase [Bordetella pertussis CS] Length = 176 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV+ P+E+ + ++ LID+M E M G+GLAA QIGV +LV+ Sbjct: 1 MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + + + NP I SD+ EGCLS+P R V R I Sbjct: 61 FGFERNDRYPDAPAVPRTILCNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYRHIRYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A+G A +QHE DHL G L+ + L + T+ + Sbjct: 121 DPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTKFGYTEVL 167 >gi|84496887|ref|ZP_00995741.1| peptide deformylase [Janibacter sp. HTCC2649] gi|84383655|gb|EAP99536.1| peptide deformylase [Janibacter sp. HTCC2649] Length = 217 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I +P+L R + +E I+ I L+ +M E M + G+GLAA Q+GV R+ Sbjct: 1 MTIRPITITGEPVLHRRAESVEVIDDGIRELVADMFETMDAARGVGLAAPQVGVGLRIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIIT----FSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYM 115 + +H V INP + D + EGCLS+P ++R T+ + Sbjct: 61 WQMDNHDGIPPRGVVINPFVTASKPVAGDPVPADESEGCLSVPGESFPLRRGETATLTGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D + A G A QHE DHLNG L++D L Sbjct: 121 DLDGNDVSYAATGWFARMFQHEYDHLNGFLYVDRL 155 >gi|15892597|ref|NP_360311.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] gi|23396566|sp|Q92HU7|DEFL_RICCN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|15619763|gb|AAL03212.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] Length = 183 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 106/163 (65%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 N-NKSSPIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+++LNG F+D LS+LKRD + KKM K ++L Sbjct: 129 AEGFLATVIQHEIEYLNGKTFLDSLSKLKRDTLLKKMLKHIKL 171 >gi|257460312|ref|ZP_05625415.1| peptide deformylase [Campylobacter gracilis RM3268] gi|257442377|gb|EEV17517.1| peptide deformylase [Campylobacter gracilis RM3268] Length = 172 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 60/171 (35%), Positives = 102/171 (59%), Gaps = 4/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L + S + K ++ + L+D+M E M + +GIGLAA+Q+G R ++I Sbjct: 1 MILNVLTYPNKKLYQRSIEVVKFDAALGELLDDMYETMIAKNGIGLAAIQVGRPVRALII 60 Query: 62 DLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L + +K+ + INP+I+ + V+QEGCLS+P + DV R+ FITV++ D Sbjct: 61 NLANEEKIQDKKDLIEIINPQILKKEGE-VVFQEGCLSVPGFYEDVTRAEFITVQFQDRA 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A LLA C+QHE+DHL+G LFI+ + KR K+ K ++ + Sbjct: 120 GNTHEMDASELLAVCIQHEMDHLDGHLFIERIGYNKRKKFDKEFKKSLKEK 170 >gi|302844969|ref|XP_002954024.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f. nagariensis] gi|300260836|gb|EFJ45053.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f. nagariensis] Length = 177 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDP LR V+ I + ++ L + M+EVMY DG+GLAA Q+GV RL+V + Sbjct: 13 IVKYPDPRLRAVNARIGVFDDSLLRLANEMIEVMYQDDGVGLAAPQVGVNIRLMVFNPAG 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 N + +NP+I+ + +EGCLS P DV+RS ITV+ +D N Q + Sbjct: 73 RDRPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQITVKALDANGQPVRLQ 132 Query: 126 -ADGLLATCLQHELDHLNGILFIDHLSR 152 D +A QHE DHL G+LF D + Sbjct: 133 LTDPWVARIFQHEYDHLQGVLFHDRMKP 160 >gi|74316798|ref|YP_314538.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259] gi|74056293|gb|AAZ96733.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC 25259] Length = 177 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L +R +E+ +++ L+ +M + M + +G GLAA QIGV ++V Sbjct: 1 MAVREVLKMGDPRLLAPARAVERFATAELAQLVADMHDTMRALNGAGLAAPQIGVSLQVV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + ++ A V +NP + SD EGCLS+P R V R I R Sbjct: 61 IFEVNANPRYPDAAEVPLTVLVNPVVTPLSDATEEGWEGCLSVPGMRGLVPRHGEIHYRG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D + G A +QHE+DHLNGIL+ + L+ Sbjct: 121 FDAAGRALERRVSGFHARVVQHEVDHLNGILYPMRIPDLR 160 >gi|310287535|ref|YP_003938793.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|309251471|gb|ADO53219.1| Peptide deformylase [Bifidobacterium bifidum S17] Length = 162 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + PDP+LR I +I + L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRTVPDPVLRTPCETIREITPAVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + S + EGCLS+P +R+ + VR +D + Sbjct: 61 YNINGKIGY-----VLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++ GL+ LQHE DHL+G +++D L + +R + M + Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMREHA 160 >gi|254445347|ref|ZP_05058823.1| peptide deformylase [Verrucomicrobiae bacterium DG1235] gi|198259655|gb|EDY83963.1| peptide deformylase [Verrucomicrobiae bacterium DG1235] Length = 191 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 18/176 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V + + +L +P+ K ++++ L +NM++ MY +GIGLAA Q+G+ V+ Sbjct: 1 MLLQIVQYGEKVLHETGKPVTKFDAELAELFENMVDTMYEAEGIGLAAQQVGLPLMFCVV 60 Query: 62 DLQDHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 DL + PM NPK+ Y+EGCLS P+ R DV+R+ Sbjct: 61 DLNGCDPDFDYTLDGAKPPFDLFMPMAIANPKVELIKSKELAYEEGCLSFPEIRGDVERT 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 +I + D +I A+GLL C+QHE+DHLNGILFID + + + KK+ Sbjct: 121 DWIRCEFQDLQGNPHVIEANGLLGRCIQHEVDHLNGILFIDRM----KKRVLKKIQ 172 >gi|317133049|ref|YP_004092363.1| peptide deformylase [Ethanoligenens harbinense YUAN-3] gi|315471028|gb|ADU27632.1| peptide deformylase [Ethanoligenens harbinense YUAN-3] Length = 160 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V D +LR+ SR + + + L+D+M + + DG+GLAA Q+G+L R VV Sbjct: 1 MAIRKIVTVGDDVLRKKSRVVTVFDQKLHLLLDDMRDTLLQADGLGLAAPQVGILKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + D + F+NP+II + EGCLSIP KR A +T+R D N Sbjct: 61 IRIGDEF-----VDFVNPEIIAAEGEQQEL-EGCLSIPGKWGITKRPAKVTIRAQDRNGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +GLLA HE DHL+G+L+ DH R+ Sbjct: 115 FFEKTGEGLLARAFCHETDHLDGVLYTDHALRI 147 >gi|256832744|ref|YP_003161471.1| peptide deformylase [Jonesia denitrificans DSM 20603] gi|256686275|gb|ACV09168.1| peptide deformylase [Jonesia denitrificans DSM 20603] Length = 162 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MAMREIRVVPDPVLRTKCDEITHIDDRVKGLVEDLLETVDMEGRAGLAANQIGVNLRAFA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ D INP+I+ S++ + EGCLS+P +R + V +D + Sbjct: 61 YNIDDDLGY-----VINPRIVELSEESYQDGDEGCLSVPGLWYPTRRHMYARVEGIDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + L+ CLQHE+DHL+G+L++D L R R +++ Sbjct: 116 RPLTVEGTDLMGRCLQHEVDHLDGLLYLDRLERSVRRRAMQELRA 160 >gi|73541574|ref|YP_296094.1| peptide deformylase [Ralstonia eutropha JMP134] gi|72118987|gb|AAZ61250.1| Formylmethionine deformylase [Ralstonia eutropha JMP134] Length = 177 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L + +RP+E+ N ++ LI++M + M +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDARLLQQARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A + V INP + SDD EGCLS+P R V R + Sbjct: 61 FGFDRNPRYPDAPKVPKTVLINPMLEMLSDDLEDGWEGCLSVPGLRGVVPRHTRLRYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A+G A +QHE DHL GIL+ + R T+ + Sbjct: 121 DLMGGSIDRVAEGFHARVVQHECDHLQGILYPMRVRDFTRFGFTEVL 167 >gi|325982985|ref|YP_004295387.1| peptide deformylase [Nitrosomonas sp. AL212] gi|325532504|gb|ADZ27225.1| peptide deformylase [Nitrosomonas sp. AL212] Length = 177 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ +P+L +V++P+++ + ++ LI +M + M +G GLAA QIGV ++V Sbjct: 1 MAIKPVLKMGEPLLLQVAKPVDRFDTPELHELIQDMQDTMAYLNGAGLAAPQIGVSLQVV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + A V +NP + SD+ EGCLS+P R V R + + Sbjct: 61 IFGFEKNQRYPDADEVPFTVLLNPHLTPLSDEKEDGWEGCLSVPGLRGIVPRYTNLHYQG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D +G A +QHE DHL GIL+ + + Sbjct: 121 FDQYGSAIDRNVNGFHARVVQHECDHLQGILYPMRIKDFR 160 >gi|189467964|ref|ZP_03016749.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM 17393] gi|189436228|gb|EDV05213.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM 17393] Length = 186 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 15/182 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + KP+ ++ + +LR+ IE+ +I +I+ M + + DG GLAA QI + +L ++ Sbjct: 1 MIKPITVYGNSVLRKECEDIEQNYPNIQEVIETMWQTLRDADGCGLAAPQINLPIKLFIV 60 Query: 62 DLQDH------AHRKNPMV---------FINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 + +D R++ V FIN KII +S+ EGCLSIPD +V R Sbjct: 61 NSKDTYTYMSAKEREHFFVEEDCGIEETFINAKIIAYSEKVWTAGEGCLSIPDLYEEVTR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +T+RY D + Q G A +QHE +H G L+ID LS L++ +I K+ +++ Sbjct: 121 PWSVTIRYQDNEFKEQNRTYYGYTARIIQHEFEHTQGKLYIDRLSPLRKQLIKNKLMRII 180 Query: 167 QL 168 + Sbjct: 181 KG 182 >gi|154509144|ref|ZP_02044786.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC 17982] gi|153798778|gb|EDN81198.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC 17982] Length = 163 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V PI +I ++ L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NP+I+ SD ++ EGCLS+P+ +R+ + D + Sbjct: 61 WNIDGEIGY-----VLNPRIVALSDDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + ++ + L+A C+QHE DHL+G ++ID L R R + + Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRATRKKALRDIR 159 >gi|34762409|ref|ZP_00143410.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742081|ref|ZP_04572562.1| polypeptide deformylase [Fusobacterium sp. 4_1_13] gi|294785287|ref|ZP_06750575.1| peptide deformylase [Fusobacterium sp. 3_1_27] gi|27887934|gb|EAA25001.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429729|gb|EEO39941.1| polypeptide deformylase [Fusobacterium sp. 4_1_13] gi|294487001|gb|EFG34363.1| peptide deformylase [Fusobacterium sp. 3_1_27] Length = 174 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 102/169 (60%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ Sbjct: 1 MVYEIKKYGEDVLKQIAKKVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D + RK INP ++ +++ ++EGCLS+P V+R + ++Y++ N Sbjct: 61 VCDDGNGVVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILFI+ +S + + +I KK++ + + Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANMKKE 165 >gi|149176747|ref|ZP_01855358.1| peptide deformylase [Planctomyces maris DSM 8797] gi|148844388|gb|EDL58740.1| peptide deformylase [Planctomyces maris DSM 8797] Length = 196 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 2/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P P LR S+P++ I ++ +++ NM ++MY GIGLAA Q+ + YRL V Sbjct: 1 MPALQIVNYPHPALRWKSKPVKSITPELRDIVRNMFDLMYEARGIGLAANQVALPYRLFV 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I+L D + VFINP+I + +EGCLS+P DVKRS ITV D N Sbjct: 61 INLTSDPNEPEEEFVFINPEITKRKG-TAEGEEGCLSLPQVYGDVKRSEEITVEAYDLNG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Q I D L A +QHE DH+ GI+F D + KR+ I Sbjct: 120 QLFEITLDDLAARAVQHEHDHIEGIMFPDRMVEAKRNEI 158 >gi|296130000|ref|YP_003637250.1| peptide deformylase [Cellulomonas flavigena DSM 20109] gi|296021815|gb|ADG75051.1| peptide deformylase [Cellulomonas flavigena DSM 20109] Length = 162 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR PI I+ + +L++++LE + GLAA QIGV R Sbjct: 1 MALREIRTVGDPVLRTPCDPITTIDERVRSLVEDLLETVDMDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ D +NP I+ S D++ EGCLS+P R+ + V D + Sbjct: 61 WNIDDEIGY-----VLNPVIVELSEDEYQDGDEGCLSVPGLWFPTHRAWYARVVGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ++ L+A CLQHE+DHL+G+L++D L R R + + + Sbjct: 116 REVVVEGTELMARCLQHEVDHLDGMLYLDRLERSVRKKAMRAIRE 160 >gi|239917583|ref|YP_002957141.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|281413931|ref|ZP_06245673.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|239838790|gb|ACS30587.1| peptide deformylase [Micrococcus luteus NCTC 2665] Length = 191 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ PDP+LR + P+ +D+ L+ +M+ M++ G+GLAA Q+GV R+ V Sbjct: 1 MTVLPVRTVPDPVLRTAASPV-PAGADVRALVADMIATMHAVGGVGLAAPQVGVGLRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ A +NP + T EGCLS+P R R A VR D + Sbjct: 60 FDVAGVAG-----HVVNPVLETAGQALREPGEGCLSVPGLRYHPARDAEAVVRGTDVDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 GLLA CLQHE DHL+GIL++D L Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRLD 145 >gi|225848865|ref|YP_002729029.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643764|gb|ACN98814.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] Length = 179 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 8/172 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63 + +PD IL+ ++ I+ + + ID M E MY +G+GLAA QIG+ Y+++VID Sbjct: 5 IRTWPDKILKEPTKEIDFFDDRLKEYIDKMWEFMYKEEGVGLAANQIGIPYQILVIDTSI 64 Query: 64 -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ MV INPKI+ + + EGCLS P + + R + V + Sbjct: 65 REKKNEEETEPPVKMVLINPKIVEK-EGQVMSTEGCLSFPGVQITIPRYKRVKVVGKNEK 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ++ + L+ LQHE+DHLNGI FI +LS LKR ++ K K ++ + Sbjct: 124 GEDVVVESSEFLSIVLQHEIDHLNGIPFISYLSPLKRKLVLDKYLKSLKESE 175 >gi|260427470|ref|ZP_05781449.1| peptide deformylase [Citreicella sp. SE45] gi|260421962|gb|EEX15213.1| peptide deformylase [Citreicella sp. SE45] Length = 164 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + P+E I +I + +M++ M + G+GL A QIGV+ RL V Sbjct: 1 MTARLCIPWPDKRLRTPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+++ S + E ++P A + R + VR+++ + Sbjct: 61 VDASEK--RGEAVRMANPEVLHASVKLRSHDEASPNLPGVWASIDRPRAVAVRFLNAEGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL AT +QH++DHLNG ++ DHLS++KRDM+ ++ K Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGRMYFDHLSKVKRDMLLRRAKK 162 >gi|255070681|ref|XP_002507422.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299] gi|226522697|gb|ACO68680.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299] Length = 257 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 90/162 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +P LR ++ + +SD+ L M ++MY T+G+GLAA Q+GV YR++V + Sbjct: 86 IQKYPHASLRNDNKIVGVFDSDLEKLAQAMFKIMYDTEGVGLAAPQVGVNYRMMVYNEAG 145 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R +V +NPKI+ FS +++EGCLS P ADV+R + V + + + Sbjct: 146 EPGRGKEVVLVNPKIVKFSKTKDLFEEGCLSFPKIYADVERPTSVQVEAQNLRGKKFKMT 205 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DG A QHE DHL+G+LF D ++ R + ++ L++ Sbjct: 206 LDGFEARVFQHEYDHLDGVLFHDRMTDEVRGTVQGELDALIE 247 >gi|323699398|ref|ZP_08111310.1| peptide deformylase [Desulfovibrio sp. ND132] gi|323459330|gb|EGB15195.1| peptide deformylase [Desulfovibrio desulfuricans ND132] Length = 165 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 1/166 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ + +PD +L + PI +I ++ LI+NM++ MY +DG+GLAA Q+ RL+ + Sbjct: 1 MRLEICTWPDEVLEAKAEPITEITPELDELIENMVQTMYESDGVGLAAPQVNQSIRLICV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D R + V INP+I+ + EGCLS P+ V+R + V+ ++ + + Sbjct: 61 DQTGPKERGDLRVLINPEIVECDGEVESD-EGCLSCPELNLKVRRKERVKVKALNRSGKE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GLLA LQHE+DHL G+ D RLK+ M KK + + Sbjct: 120 ICVETGGLLAIILQHEIDHLEGVTLADRSGRLKKAMYRKKALRWKR 165 >gi|308069676|ref|YP_003871281.1| peptide deformylase (PDF) [Paenibacillus polymyxa E681] gi|305858955|gb|ADM70743.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681] Length = 165 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 94/153 (61%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ PD +L +V++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+V Sbjct: 1 MSIRIIVLEPDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D + INP+I+ + + EGCLSIP DV+R+ +TV+ +D + Sbjct: 61 VDAGD---EHGLIKMINPEIVAE-EGEELGPEGCLSIPGLNGDVRRAEKVTVKGLDREGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A GLL+ QHE+DHLNGILF D ++ Sbjct: 117 AITVTATGLLSRAFQHEIDHLNGILFTDIAEKV 149 >gi|145345192|ref|XP_001417104.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901] gi|144577330|gb|ABO95397.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901] Length = 240 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 84/157 (53%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +P LR + P+E + ++ L M ++MY T G GLAA Q+GV YR++V + Sbjct: 68 IAKYPAKCLRAKNAPVETFDKNLERLSKAMFKIMYETVGCGLAAPQVGVNYRMMVYNEAG 127 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +V NP+I+ FS + +++EGCLS P ADV+R + + + + + Sbjct: 128 EPGQGREVVLCNPEIVKFSKEKDLFEEGCLSFPKMYADVERPIGVQIEAQNLKGKKFKMT 187 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +G A QHE DHL+G+L+ D +S R + + Sbjct: 188 LEGFEARVFQHEYDHLDGVLYHDRMSPEVRASVQSTL 224 >gi|317402414|gb|EFV82986.1| peptide deformylase 1 [Achromobacter xylosoxidans C54] Length = 177 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV+ P+E+ + ++ LI++M E M + G+GLAA QIGV +LV+ Sbjct: 1 MIHSILKMGDPRLLRVAPPVERFDTPELHALIEDMFETMAAAQGVGLAAPQIGVDLQLVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + + NP I SDD EGCLS+P R V R I + Sbjct: 61 FGFDRNERYPDAPAVPQTILCNPVITPLSDDMEDGWEGCLSVPGLRGLVPRYRHIRYQGK 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + A+G A +QHE DHL G L+ + + T+ Sbjct: 121 DPYGRDIDREAEGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165 >gi|229918580|ref|YP_002887226.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b] gi|229470009|gb|ACQ71781.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b] Length = 466 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 56/145 (38%), Positives = 78/145 (53%), Gaps = 4/145 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ ILR P+ K + + +D + + MY DG+G+AA Q+ + RL V+ D Sbjct: 4 VVEVPNDILRVTCEPVTKFDKKLRQTVDRLFDTMYEYDGVGVAAPQVNLNQRLAVVHTDD 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+V INP+II S V EGCLSIP V+R I V+ D + I Sbjct: 64 ETG---PLVLINPEIIETSG-REVGLEGCLSIPGEFGFVERHESIVVKNQDVKGRTHTIQ 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150 A G A +QHE+DHL+G+LF D L Sbjct: 120 ASGFFARAIQHEMDHLDGVLFTDKL 144 >gi|224825207|ref|ZP_03698313.1| peptide deformylase [Lutiella nitroferrum 2002] gi|224602878|gb|EEG09055.1| peptide deformylase [Lutiella nitroferrum 2002] Length = 170 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 6/157 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +K+P + P+LR+ + + + + + L+ +M + Y+ +G+GLAA QIGV R++V Sbjct: 1 MKRPFLPQEHPMLRQHAAAVTEFDTPALHELVQDMFDTQYAGNGVGLAAPQIGVPLRVIV 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A P V INP+I ++ EGC S+P R V R I R Sbjct: 61 FAYGGGERDPGAPAIPPTVLINPEIRPDAEHIEEDWEGCFSVPGQRGRVPRWQAIRYRAQ 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D + A+G A +QHE+DHLNG LFIDHL Sbjct: 121 DIQGRLVEGRAEGFHARIIQHEVDHLNGTLFIDHLPP 157 >gi|118594792|ref|ZP_01552139.1| peptide deformylase [Methylophilales bacterium HTCC2181] gi|118440570|gb|EAV47197.1| peptide deformylase [Methylophilales bacterium HTCC2181] Length = 171 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K ++ DP+L ++PIE +N ++ +I++M+E M + DG GLAA QIG+ +LV Sbjct: 1 MAIKDILKMGDPLLLSAAQPIEAVNTPELNQIIEDMIETMKANDGAGLAAPQIGLSIQLV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP+II ++ EGCLS+P R V R I + Sbjct: 61 IFGFDSNERYPDAEEVPFTVLINPEIIPLEEEMEDGWEGCLSVPGLRGVVPRYKSIHYKG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +D Q DG A +QHE DHL G L+ ++ + Sbjct: 121 IDQFGQTIDRKVDGFHARVVQHECDHLIGKLYPMRMNDM 159 >gi|33863868|ref|NP_895428.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313] gi|124022020|ref|YP_001016327.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303] gi|39930996|sp|Q7V5F9|DEF2_PROMM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|33635451|emb|CAE21776.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9313] gi|123962306|gb|ABM77062.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9303] Length = 201 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 93/148 (62%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + + +LR+ +R I K++ + +L+ +ML MY+ GIGLAA Q+G+ +L+V+DL Sbjct: 33 IHTLGNGVLRQSTRRIGKVDESVRDLVRDMLRSMYAAKGIGLAAPQVGIHKQLLVLDLDL 92 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+V INP+II+ S Y+EGCLSIP +V R + I + + D + + + Sbjct: 93 ETPTTPPVVLINPEIISSSATVETYEEGCLSIPGVYLNVVRPSEIVLSFRDEMGRPRKMK 152 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153 ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 153 ADGLMARCIQHEMDHLEGVLFVDRVTDE 180 >gi|167570376|ref|ZP_02363250.1| peptide deformylase [Burkholderia oklahomensis C6786] Length = 177 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L V+RP+E N ++ L+ +M E M+ +G GLAA Q+GV ++++ Sbjct: 1 MIREILKMGDQRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP + D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D + A+G A +QHE DHL G L+ ++ + T Sbjct: 121 DQFGEKLERVAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGFT 164 >gi|315924512|ref|ZP_07920733.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622216|gb|EFV02176.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263] Length = 172 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L + DPILR+ +R I +IN I L +MLE MY DG+GLAA Q+GVL +LVV Sbjct: 1 MAIRKLRYYDDPILRKRAREITEINDRIKTLAADMLETMYDDDGVGLAAPQVGVLRQLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+I++ S V EGCLS PD V+R ++T R+ + Q Sbjct: 61 IDVG-----QGPITMINPEIVSQSGSI-VDSEGCLSFPDEAGYVERPEYVTARFTNLEGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD--MITKKMSKLVQL 168 + LLA + HELDHL G +FID +++ MI ++ +L + Sbjct: 115 RCEVKGHMLLARAICHELDHLKGEVFIDKKIPVEKAEVMIAEQEKRLAKE 164 >gi|296141405|ref|YP_003648648.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] gi|296029539|gb|ADG80309.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] Length = 198 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 15/176 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+VI DP+L + P+E + +++I+ L+D+MLE M +G+GLA Q+G Sbjct: 1 MAVLPIVIVGDPVLHTPTTPVELDADGRPDAEIVALLDDMLETMDRANGVGLAGNQVGRD 60 Query: 56 YRLVVIDLQDHA-HRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 RL V D D H + INP +I D EGCLS+P R+ + Sbjct: 61 LRLFVYDCPDEETHERRRGEVINPVLTTSEIPETMPDPDDDWEGCLSVPGESFPTGRADW 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID----HLSRLKRDMITKK 161 V D N + I G A LQHE HL+G L+ D +R + I K+ Sbjct: 121 AKVVGTDRNGEKVEIEGTGFFARMLQHETGHLDGFLYTDVLVGRYARQAKKFIKKQ 176 >gi|159038089|ref|YP_001537342.1| peptide deformylase [Salinispora arenicola CNS-205] gi|157916924|gb|ABV98351.1| peptide deformylase [Salinispora arenicola CNS-205] Length = 168 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M +P+ + DP+LR + P+ ++++ L+ ++++ + G G+AA QIGV R+ Sbjct: 1 MTMRPIRLIGDPVLRTPAEPVTSFDAELRALVADLMDTLLGAPGRAGVAAPQIGVSARVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D H +NP + D+ EGCLS+P R+ T +D + Sbjct: 61 VYDADGHRG-----HLVNPTL-ELGDEQQDDDEGCLSVPGLYFPTSRAMHATAHGVDQHG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q I G LA LQHE DHL G L++D L R +++ Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTLRGEIRRRALREIRA 159 >gi|226312666|ref|YP_002772560.1| peptide deformylase [Brevibacillus brevis NBRC 100599] gi|226095614|dbj|BAH44056.1| peptide deformylase [Brevibacillus brevis NBRC 100599] Length = 175 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 102/173 (58%), Gaps = 9/173 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M ++ +V DPILR S+ ++ I + ++D+M++ +Y+ G GL+A+QIG+ RLV Sbjct: 1 MAERMIVRLGDPILRETSKRVQSITPQVEKILDDMVQTIYAAKGRAGLSAIQIGIPKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + INP ++ S + V QE CLSIP V+R+ ++ V+ ++ Sbjct: 61 VMDCG-----SGLIELINPVLMEKSGE-QVGQEACLSIPGVFGIVRRANYVKVQTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQLRD 170 + + I A+ LA C+QHE+DHL GILFIDH L KK+++ L +++D Sbjct: 115 ETKTIEAEDFLARCIQHEMDHLEGILFIDHTEELYSAKTGKKLNRKDLHRIQD 167 >gi|120401747|ref|YP_951576.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1] gi|158513127|sp|A1T320|DEF_MYCVP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|119954565|gb|ABM11570.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1] Length = 197 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 12/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +P+ I DP+L + P+ D+ +LI +M + M + G+GLAA QIGV Sbjct: 1 MAVRPIRIVGDPVLHTATEPVPVGADGSLPADLADLITDMYDTMDAAHGVGLAANQIGVS 60 Query: 56 YRLVVIDLQDHAHR--KNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D + + V INP +I D EGCLS+P R+ Sbjct: 61 KRVFVYDCADERKKTTRRRGVVINPVLETSEIPETMPDPEDDDEGCLSVPGESFPTGRAD 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + V +D + + L A LQHE HL+G L++D L K + Sbjct: 121 WARVTGLDADGTPITLEGTDLFARMLQHETGHLDGFLYLDRLIGRNARSAKKTVK 175 >gi|291167035|gb|EFE29081.1| peptide deformylase [Filifactor alocis ATCC 35896] Length = 147 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 67/153 (43%), Positives = 91/153 (59%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D +LR+VSRP+ ++ I LI +M++ MY DG+GLAA Q+GVL R++V Sbjct: 1 MAIREVRIDGDEVLRKVSRPVTEMTPRIEQLIGDMIDTMYQYDGVGLAAPQVGVLRRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + PMVFINP+I+ + QEGCLSIP DVKR + V + + Sbjct: 61 IDIGE-----GPMVFINPEIVEQEGE-QCGQEGCLSIPGVYMDVKRPNHVVVTAKNEKME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + D LLA L HE+DHLNGILF D R Sbjct: 115 DIRVEGDELLARALCHEIDHLNGILFKDIAERE 147 >gi|330991623|ref|ZP_08315574.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1] gi|329761642|gb|EGG78135.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1] Length = 173 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FP L++ + P++ ++ L ++LE M++ GIG+ A +G+L RLVV Sbjct: 1 MAILPIIRFPHACLQQAAAPVDATSARTTELARDLLETMHAAPGIGITACHVGMLLRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL P NP+II + +EG +S+P A V R A + VRY + Sbjct: 61 IDLPGGNG---PQARANPEIIWQDTATATAEEGSVSMPGIHAPVTRPARVRVRYTGLDGL 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA CLQHE+D +NGI + LS L+RD K+ S+ +L Sbjct: 118 MVEEEAEGLLAACLQHEIDQINGIFWTRRLSPLRRDRAMKRYSRQTRL 165 >gi|218892912|ref|YP_002441781.1| peptide deformylase [Pseudomonas aeruginosa LESB58] gi|254234257|ref|ZP_04927580.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719] gi|126166188|gb|EAZ51699.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719] gi|218773140|emb|CAW28952.1| probable peptide deformylase [Pseudomonas aeruginosa LESB58] Length = 179 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R+++P+ + ++ LID+M E M+ G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + + P + +NP+I D+ EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D Q +G A +QHE DHL G L+ ++ + T+ + Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTEVL 169 >gi|118581913|ref|YP_903163.1| peptide deformylase [Pelobacter propionicus DSM 2379] gi|118504623|gb|ABL01106.1| peptide deformylase [Pelobacter propionicus DSM 2379] Length = 168 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 98/166 (59%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M P++ +P P+L+++ + I+ +I LI ++L+ M + G +G+AA QIGV R Sbjct: 1 MAIHPILRYPHPLLKKICHEVTGIDREIHALIQDLLDTMRAGPGSVGVAAPQIGVTLRAC 60 Query: 60 VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ + + INP+II S +V +EGC+S+PDY DV+RS + V ++ Sbjct: 61 VVDVSNSRNGRENNHGLLRMINPRIIARSGS-AVMREGCMSVPDYTGDVERSTELRVSFL 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + + I A G A LQHE+DHL+GILF+D + +K + +K Sbjct: 120 EPEGELREITASGFEAVALQHEMDHLDGILFLDRIVSVKTGLFRRK 165 >gi|289706123|ref|ZP_06502494.1| peptide deformylase [Micrococcus luteus SK58] gi|289557156|gb|EFD50476.1| peptide deformylase [Micrococcus luteus SK58] Length = 210 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 7/167 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P+ ++ +P+L R + +E I+ +I LI++M + G+GLAA Q+GV R+ Sbjct: 1 MASIRPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAAPQVGVGLRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDD------FSVYQEGCLSIPDYRADVKRSAFITVR 113 D N INP + + EGCLS+P ++R + + Sbjct: 61 TWTFPDSGDAPNVGHVINPVLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + A+G A +QHE DHLNG L+++ L + + Sbjct: 121 GQRVDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEGKWQRRWKR 167 >gi|226226031|ref|YP_002760137.1| peptide deformylase [Gemmatimonas aurantiaca T-27] gi|226089222|dbj|BAH37667.1| peptide deformylase [Gemmatimonas aurantiaca T-27] Length = 196 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 95/174 (54%), Gaps = 13/174 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+LR+ ++ +E + ++ L+DNM + M + G+GLAA Q+G L RL V Sbjct: 1 MSLLDIHVLGSPVLRQETQRVESVTPELRRLVDNMFDTMEAAKGVGLAAPQVGRLERLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D +V INP+II + +EGCLSIP+ ADV R A + VR D + Sbjct: 61 VDADDVR-----LVVINPEII-LREGLERGEEGCLSIPEVYADVDRPARVIVRAQDIDLN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK-------KMSKLVQ 167 + A LL CLQHE+DHL G LF D LS LK+ K K KL++ Sbjct: 115 WYEVDAANLLGRCLQHEIDHLFGKLFTDRLSLLKKRSAMKDWDHEKGKYPKLLR 168 >gi|222056880|ref|YP_002539242.1| peptide deformylase [Geobacter sp. FRC-32] gi|221566169|gb|ACM22141.1| peptide deformylase [Geobacter sp. FRC-32] Length = 168 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 103/169 (60%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + ++++P P+L+++ P+ I+ +I L+ ++L+ M++ G +G+AA QIGV R+ Sbjct: 1 MPGQKILLYPHPVLKKLCHPVGAIDGEIKGLLQDLLDCMHAGPGSVGVAAPQIGVTLRVC 60 Query: 60 VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ + + INP I S ++ +EGC+S+PDY DV+R+ ITVR+ Sbjct: 61 VVDVSNSRNGKDNNHGLLQLINPVITERSGA-AIMREGCMSVPDYTGDVERATEITVRFT 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N + + A G A +QHE+DHL+G+LF+D ++ LK + +K K Sbjct: 120 DGNGIEREVKASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKNYK 168 >gi|134102367|ref|YP_001108028.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|291009319|ref|ZP_06567292.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|133914990|emb|CAM05103.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] Length = 166 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 5/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DP+LR + P+ + + +++ ++L+ + + GLAA QIGV R Sbjct: 1 MAFREIRRFGDPVLRTPAEPVTVFDDRLRSVVADLLDTVDAPGHAGLAAPQIGVGIRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP+++ S++ EGCLS+P+ D R+ VR +D + + Sbjct: 61 YNVDGEIGY-----VVNPEVVELSEEQQEGPEGCLSVPELWFDTPRARHAVVRGVDADNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + GL+A CLQHE DHL+G++++ L+ Sbjct: 116 PVTVSGSGLMARCLQHETDHLDGMIYVQRLAP 147 >gi|167750831|ref|ZP_02422958.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702] gi|167656266|gb|EDS00396.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702] Length = 160 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ + D LR+ + + + + ++D+M E M +G+GLAA QI VL R+VV Sbjct: 1 MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + INP I + EGCLS+P V R A + V+ D + Sbjct: 61 IDVGDEHGKIE---LINPVITSMKGKQHEL-EGCLSLPGMWGYVDRPAKVKVKAQDRYGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I LLA L HE+DHL+GILF D L ++ K Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADELLTSEQLEERKK 160 >gi|291277234|ref|YP_003517006.1| polypeptide deformylase [Helicobacter mustelae 12198] gi|290964428|emb|CBG40278.1| polypeptide deformylase [Helicobacter mustelae 12198] Length = 171 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 96/155 (61%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P P+LR+ S+ ++ ++ + +D+M + M +G+GLAAVQ+G L+R+++ Sbjct: 1 MAVLEVLSYPHPLLRQKSKEVQNFDASLHAFLDDMYDTMLEREGVGLAAVQVGRLHRILL 60 Query: 61 IDLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +++ ++++ + INP I+ ++ + EGCLS+P + +VKR IT+ Y D Sbjct: 61 VNIPRQEDGKQYKEDLLEIINPVIL-HQEEEIFWNEGCLSVPGFYEEVKRYGSITLGYQD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Q++ A G LA LQHE+DHL GILFID LS Sbjct: 120 RFGGEQVLRAQGFLAVALQHEMDHLEGILFIDKLS 154 >gi|289209646|ref|YP_003461712.1| peptide deformylase [Thioalkalivibrio sp. K90mix] gi|288945277|gb|ADC72976.1| peptide deformylase [Thioalkalivibrio sp. K90mix] Length = 178 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 9/174 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ P LRRV P+ + + + L+D++++ M++++G+GLAA QIGV +R Sbjct: 1 MSVRRILRMGHPDLRRVCDPVPESDFDSPGLHALVDDLVDTMHASEGLGLAAAQIGVPHR 60 Query: 58 LVVIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + VI++Q R + +NP + Y EGCLS+P R +V R I Sbjct: 61 VAVIEIQPGNTRYPGAVPTGRLALVNPVVTVLDPTPQRYWEGCLSVPGLRGEVARPRHIA 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 V Y + + + + +G LAT QHE+DHL+G LFID ++ R + + Sbjct: 121 VDYHEPDGTPRHLEPEGFLATVFQHEIDHLDGTLFIDRVTDTTRLAFLDEYREF 174 >gi|172057935|ref|YP_001814395.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15] gi|171990456|gb|ACB61378.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15] Length = 461 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 4/145 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ +LR+ + + K + + +ID M + MY DG+GLAA QI R+ V+ D Sbjct: 4 VVEVPNEVLRQKCQRVTKFDKKLGKMIDRMFDTMYEYDGVGLAAPQINQPIRVAVVHTDD 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+II + + EGCLS+P V+R I V+ D + I Sbjct: 64 ETG---PIELINPEIIEATGS-EIDDEGCLSMPGIFGPVERFEQIVVKSQDRLGRSVKIK 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150 A+G A +QHE+DHL+G+LF D L Sbjct: 120 ANGFFARAIQHEMDHLDGVLFTDKL 144 >gi|257791461|ref|YP_003182067.1| peptide deformylase [Eggerthella lenta DSM 2243] gi|257475358|gb|ACV55678.1| peptide deformylase [Eggerthella lenta DSM 2243] Length = 183 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 81/158 (51%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+PIL +V P + + + L M + MY DG GLAA Q+GV RLVVID Sbjct: 7 IVQSPNPILNQVCDPCDLGDKSLKKLAKQMAKAMYKNDGCGLAAPQLGVAKRLVVIDCDQ 66 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +NP+V +NP ++ D V EGCLS P + R F VRY D + + I Sbjct: 67 EEGEQNPIVLVNPVLVDTQGDPVVAGEGCLSCPGITVPIARPPFARVRYFDLDGEEWEIE 126 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D LL CLQHELDHL+GI + + R + Sbjct: 127 GDDLLGRCLQHELDHLDGITMFERCDPMARIEALRDYE 164 >gi|86738737|ref|YP_479137.1| peptide deformylase [Frankia sp. CcI3] gi|86565599|gb|ABD09408.1| peptide deformylase [Frankia sp. CcI3] Length = 230 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 4/170 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +P+L R + I + +++ LID+M MY +G+GLAA QI V + V Sbjct: 47 IRRITVVGEPVLHRPCKKITEFGTAELAALIDDMFTTMYGAEGVGLAANQIDVDAAVFVY 106 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + EGCLS+P +V R VR D + Sbjct: 107 DCTDEDGVRHVGHLVNPVLEEAPPAERRLVKGDEGCLSVPGAYMEVARLEHAAVRGQDQH 166 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A CLQHE DHL G L++D LS R ++M + + Sbjct: 167 GAPLRLEGTGYFARCLQHETDHLYGSLYLDRLSSRGRKKALREMEERTEE 216 >gi|323705507|ref|ZP_08117082.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535409|gb|EGB25185.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11] Length = 158 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPIL + ++ ++KI+ ++ ++D+M E MY+ DG+GLAA QIG+L RLVV Sbjct: 1 MALRYIRKIGDPILYKKAKYVDKIDDHVIMILDDMAETMYNADGVGLAANQIGILRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP+II + + +EGCLS+P+ +VKR + VRY D + Sbjct: 61 VDVGD-----GLIELINPEII-LEEGEQIGKEGCLSVPNVTGEVKRPKKVRVRYQDRTGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 ++ + + LA L HE+DHLNGILF++ R+ D K Sbjct: 115 YKELEGEDFLARALSHEIDHLNGILFVNKAIRIINDEEEK 154 >gi|313207141|ref|YP_004046318.1| peptide deformylase [Riemerella anatipestifer DSM 15868] gi|312446457|gb|ADQ82812.1| peptide deformylase [Riemerella anatipestifer DSM 15868] gi|315022461|gb|EFT35488.1| peptide deformylase [Riemerella anatipestifer RA-YM] gi|325335421|gb|ADZ11695.1| N-formylmethionyl-tRNA deformylase [Riemerella anatipestifer RA-GD] Length = 190 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 11/161 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + DP+LR+ + I ++ LI NM E M GIGLAA QIG+ RL ++ Sbjct: 1 MILPIRAYGDPVLRKKGQDITPDYPNLKELIQNMFETMEGAHGIGLAAPQIGLDIRLFIV 60 Query: 62 DLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D++ A ++ VFIN KI+ + + + EGCLSIP+ R DVKR I Sbjct: 61 DVRPLAEDEDYLDIADELKDFRKVFINAKILEETGEEWKFNEGCLSIPEVREDVKRKDTI 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 T+ Y D + + + A +QHE DH+ GILF D LS Sbjct: 121 TIEYYDEDFKKHTETYSDIRARVIQHEYDHIEGILFTDKLS 161 >gi|124023604|ref|YP_001017911.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303] gi|123963890|gb|ABM78646.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT 9303] Length = 181 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K ++ +P LR+VS+ ++ ++++++ +LI ++ + + + G GLAA QIG+ R+V Sbjct: 1 MAVKEILRMGNPQLRQVSKVVDDVSAELIISLIKDLQDTVKAHQGAGLAAPQIGIPLRVV 60 Query: 60 VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + R + INP + D EGCLS+P R V R + I R Sbjct: 61 LFGGGGPNPRYPEAPSIPQTLLINPVLTPIDSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ + +G A +QHE DHL+G+LF D L T ++ Sbjct: 121 ALNEDGLEIEHCLEGFPARVIQHECDHLDGVLFTDRLVDSASFGFTGELEA 171 >gi|21222943|ref|NP_628722.1| polypetide deformylase [Streptomyces coelicolor A3(2)] gi|256785943|ref|ZP_05524374.1| polypetide deformylase [Streptomyces lividans TK24] gi|289769835|ref|ZP_06529213.1| polypeptide deformylase [Streptomyces lividans TK24] gi|8134401|sp|Q9XAQ2|DEF3_STRCO RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName: Full=Polypeptide deformylase 3 gi|5042279|emb|CAB44533.1| putative polypetide deformylase [Streptomyces coelicolor A3(2)] gi|289700034|gb|EFD67463.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 208 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +L R R + + D+ LID+M MY +G GLAA Q+GV RL V Sbjct: 25 AVRRVTEVGEEVLHRPCRDVTEFGPDLAALIDDMFRTMYVAEGAGLAANQVGVDLRLFVY 84 Query: 62 DLQDHAHRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + EGCLS+P V R VR +D + Sbjct: 85 DCPDDEGVRHVGHLVNPVLDALDPAARRLLDEGEGCLSVPGAVMAVPRPDRAVVRGLDKD 144 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 ++ G A CL HE DH+NG +++D LS +R ++ Sbjct: 145 GVPLLVEGTGYFARCLAHETDHVNGHVYLDRLSGRERKAALRQ 187 >gi|116049053|ref|YP_792145.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|296390510|ref|ZP_06879985.1| peptide deformylase [Pseudomonas aeruginosa PAb1] gi|313106089|ref|ZP_07792346.1| putative peptide deformylase [Pseudomonas aeruginosa 39016] gi|115584274|gb|ABJ10289.1| probable peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|310878848|gb|EFQ37442.1| putative peptide deformylase [Pseudomonas aeruginosa 39016] Length = 179 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R+++P+ + ++ LID+M E M+ G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAQPVPSELLGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + + P + +NP+I D+ EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D Q +G A +QHE DHL G L+ ++ + T+ + Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTEVL 169 >gi|78355060|ref|YP_386509.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217465|gb|ABB36814.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 169 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 1/166 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PD L IE+I +I L +M E MY DGIGLAA Q+G RL+V+ Sbjct: 1 MIREILTYPDRRLAIECEEIEEITDEIRQLAADMAETMYDADGIGLAAPQVGATCRLIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ R++ +INP++ +EGCLS+P R+ V R+ + + D + Sbjct: 61 DVSGPEAREDLRTYINPRLELLEGKVDT-EEGCLSVPALRSKVTRTEKVRLHATDLDGNA 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I ADGLL+ CLQHE+DHL+G LFID +SRLKR + K+ K + Sbjct: 120 VCIDADGLLSICLQHEIDHLDGTLFIDKISRLKRSLYDNKVKKWQK 165 >gi|237753393|ref|ZP_04583873.1| polypeptide deformylase pdf formylmethioninedeformylase [Helicobacter winghamensis ATCC BAA-430] gi|229375660|gb|EEO25751.1| polypeptide deformylase pdf formylmethioninedeformylase [Helicobacter winghamensis ATCC BAA-430] Length = 168 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 103/166 (62%), Gaps = 4/166 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ +P+P+LR++S+ +E + + L+D M EVM + +G+G++A+Q+ R ++I + Sbjct: 3 EVITYPNPLLRQISKSVEVFDKGLHTLLDEMYEVMLAKNGVGISAIQVAKPIRALLICIP 62 Query: 65 DHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D H+++ + INPKII + ++ EGCLS+P++ ++KR++ I + Y D Sbjct: 63 DEDGNQHKEDLLEVINPKIIERDGEI-LFNEGCLSVPEFYEEIKRASNIKIAYQDRYGNP 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q I A LA QHE+DHLNG+LFID LS +KR K++ + + Sbjct: 122 QEIVAQDYLAVAFQHEIDHLNGVLFIDKLSIVKRKKFEKELKQRQK 167 >gi|118470670|ref|YP_885236.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155] gi|158512462|sp|A0QQP8|DEF_MYCS2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|118171957|gb|ABK72853.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155] Length = 197 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 12/176 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ + D+ LI +M + M + +G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTEPVPVGPDGSLPDDLPALIQDMFDTMDAANGVGLAANQIGVA 60 Query: 56 YRLVVIDLQDHAHR--KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108 RL V D + + V INP + T D +EGCLS+P R+ Sbjct: 61 KRLFVYDCAPTRGQTTRRRGVVINPVLETSEVPETMPDPDEDEEGCLSVPGENFPTGRAD 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + V +D + + + L A LQHE HL+G L++D L K + + Sbjct: 121 WARVTGLDADGSPITLEGEDLFARMLQHETGHLDGFLYLDRLVGRYARAAKKAVKR 176 >gi|91792258|ref|YP_561909.1| peptide deformylase [Shewanella denitrificans OS217] gi|91714260|gb|ABE54186.1| Peptide deformylase [Shewanella denitrificans OS217] Length = 167 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ P+ L+ ++ + I + +LID+ML+ +Y T DGIGLAA Q+G ++ Sbjct: 1 MAVLDILKAPNEKLKVTAKKVSNI-EQVQSLIDDMLDTLYHTEDGIGLAATQVGRNEAII 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +ID+ + R +P++ INP++I + QEGCLS+P Y ADV+R + + V +D + Sbjct: 60 IIDISET--RDSPLILINPEVIE-GTNIEKGQEGCLSVPGYYADVERFSRVKVTGLDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 II D LA LQHE+DHL G+LFID+LS LK+ M Sbjct: 117 NEVIIDNDDFLAIVLQHEIDHLKGVLFIDYLSPLKQSM 154 >gi|146276206|ref|YP_001166365.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] gi|145554447|gb|ABP69060.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] Length = 163 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 1/147 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +PDP L + P + L +ML MY G GLAA Q+G + RL V Sbjct: 1 MAVRPILRWPDPRLSQPCAPAVP-GPALEELASDMLATMYHAQGRGLAAPQVGEMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ S + EGCLSI R V R+ I +R+ Sbjct: 60 MDTVWKDGPAEPQVFVNPEILWMSGERVEGPEGCLSIAGPRLTVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 Q G A C QHE+DHL+GI+ + Sbjct: 120 EQEALLSGFAAICAQHEIDHLDGIVIL 146 >gi|291530592|emb|CBK96177.1| peptide deformylase [Eubacterium siraeum 70/3] gi|291557816|emb|CBL34933.1| peptide deformylase [Eubacterium siraeum V10Sc8a] Length = 160 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ + D LR+ + + + + ++D+M E M +G+GLAA QI VL R+VV Sbjct: 1 MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + INP I + EGCLS+P V R A + V+ D + Sbjct: 61 IDVGDEHGKIE---LINPVITSMKGKQHEL-EGCLSVPGMWGYVDRPAKVKVKAQDRYGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I LLA L HE+DHL+GILF D L ++ K Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADELLTSEQLEERKK 160 >gi|33862657|ref|NP_894217.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313] gi|39931000|sp|Q7V8G6|DEF1_PROMM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|33634573|emb|CAE20559.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT 9313] Length = 192 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K ++ +P LR+VS ++ + +++ +LI ++ + + + G GLAA QIGV R+V Sbjct: 1 MAVKEILRMGNPQLRKVSNVVDDASDELIISLIKDLQDTVKAHQGAGLAAPQIGVPLRVV 60 Query: 60 VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + R + INP + D EGCLS+P R V R + I R Sbjct: 61 LFGGGGPNPRYPEAPSIPQTLLINPVLTPIGSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + +G A +QHE DHL+G+LF D L T ++ Sbjct: 121 ALNEDGFEVEHCLEGFPARVIQHECDHLDGVLFPDRLVDSASFGFTGELE 170 >gi|148266395|ref|YP_001233101.1| peptide deformylase [Geobacter uraniireducens Rf4] gi|146399895|gb|ABQ28528.1| peptide deformylase [Geobacter uraniireducens Rf4] Length = 168 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 103/169 (60%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + ++++P PIL+++ P+ I+ I L+ ++L+ M++ G +G+AA QIGV R+ Sbjct: 1 MPVQKILLYPHPILKKMCHPVAAIDRSITGLLQDLLDTMHAGPGSVGVAAPQIGVTLRVC 60 Query: 60 VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ + + INP+I ++ +EGC+S+PDY DV+R+ IT+R+M Sbjct: 61 VVDVSASRNGKENNHGLLQMINPEITKRQGA-AIMREGCMSVPDYTGDVERATEITIRFM 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + H I A G A +QHE+DHL+G+LF+D ++ LK + +K K Sbjct: 120 DGDGIHHEIEASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKSYK 168 >gi|313683649|ref|YP_004061387.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994] gi|313156509|gb|ADR35187.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994] Length = 171 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 100/171 (58%), Gaps = 4/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ +P+ L+ S+ + + + +D+M E M +++GIGLAA+Q+ R++++ Sbjct: 1 MLLPIITYPNKQLKARSQTVVNFDELLHRFLDDMYETMIASNGIGLAAIQVANPIRVLIL 60 Query: 62 DLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D H++N + INP I + +YQEGCLS+P + DV+R ++++Y + + Sbjct: 61 CIPDEEGNQHKENLLEIINPVIHNPKGN-VLYQEGCLSVPGFYEDVERYETLSLKYQNRH 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ++A LLA +QHE+DHL G LFI+ L+ +R K+ K + + Sbjct: 120 GEACELHASDLLAIAIQHEIDHLEGKLFIEKLTYNRRKKFEKEYKKAQKEK 170 >gi|297181739|gb|ADI17920.1| N-formylmethionyl-tRNA deformylase [uncultured Desulfobacterales bacterium HF0200_07G10] Length = 174 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M ++++PD L +VSRP+++ + DI + ++ E S G +G+AA Q+G R++ Sbjct: 1 MAVLDILVYPDKRLTQVSRPVDEFSRDIKTFVKDLEETFRSYPGCVGIAAPQVGRFERII 60 Query: 60 VIDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++D+ N +V INPKI ++ + S+ +EGCLS+PDY V+R+ I + ++ Sbjct: 61 LVDVSQKPQHVNHGFLVLINPKITSYEGN-SLGREGCLSVPDYTGKVERAKSIALEALNE 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 N Q + G A +QHE+DHL+G LFID L +R+ + K++ L++ Sbjct: 120 NGDKQELKLSGYEARAVQHEIDHLDGKLFIDRLVG-RRNSLNKRIELSTDLKN 171 >gi|294786951|ref|ZP_06752205.1| peptide deformylase [Parascardovia denticolens F0305] gi|294485784|gb|EFG33418.1| peptide deformylase [Parascardovia denticolens F0305] Length = 163 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR V PI I + NL+ ++L+ + GL+A QIGV R Sbjct: 1 MTIRDIRIVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NPKI+ S + EGCLS+P +R+ + V +D + + Sbjct: 61 YNIDGKVGY-----VLNPKIVARSGE-QYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ G++ LQHE DHL+G +++D L + +R + M + + Sbjct: 115 KIVLEGKGIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRRQQK 161 >gi|91205496|ref|YP_537851.1| polypeptide deformylase [Rickettsia bellii RML369-C] gi|157827211|ref|YP_001496275.1| polypeptide deformylase [Rickettsia bellii OSU 85-389] gi|91069040|gb|ABE04762.1| Polypeptide deformylase [Rickettsia bellii RML369-C] gi|157802515|gb|ABV79238.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389] Length = 183 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 101/163 (61%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ IE ++ +I +ID ML M +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQGELIEVVDDNIRTIIDKMLNTMQIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ +P++FINP+I FS D + E LS P A + RS I + Y+D + Q + Sbjct: 70 N-NKSSPIIFINPEITYFSSDKQTFMERSLSFPGIEAPITRSKAIKINYLDYHGNKQELE 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A LAT +QHE+D+LNG +F+DHLS+LKRD + KKM K +++ Sbjct: 129 AQDFLATVIQHEVDYLNGKVFLDHLSKLKRDTLLKKMLKYIKM 171 >gi|293977820|ref|YP_003543250.1| peptide deformylase [Candidatus Sulcia muelleri DMIN] gi|292667751|gb|ADE35386.1| peptide deformylase [Candidatus Sulcia muelleri DMIN] Length = 189 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 9/176 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++I+ + LR+ I+K DI LI+NM + MY GIGL+A QIG+ RL +I Sbjct: 1 MILPIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + +K VFINP II + +EGCLSIP+ ++KR I + Y D N + Sbjct: 61 EYNNFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKK 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168 + +G L+ +QHE DH+ G LFID++ LK +I K K+ KL +L Sbjct: 121 YKQHFNGFLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 176 >gi|308235005|ref|ZP_07665742.1| peptide deformylase [Gardnerella vaginalis ATCC 14018] gi|311114690|ref|YP_003985911.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] gi|310946184|gb|ADP38888.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] Length = 162 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 6/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR PI +I + NL++++LE + GL+A QIG+ R Sbjct: 1 MTIRQIRIVPDPVLRTPCDPIREITPAVRNLVEDLLETVNDPGRAGLSANQIGISLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ H +NP I S + EGCLS+P +R+ + + +D + + Sbjct: 61 YNIEGHIGY-----ILNPVIEELSGE-QYGDEGCLSVPRLWYKTRRADYARAKGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ GL+A +QHE DHL+G +++D L + R +++ Sbjct: 115 TIVLEGKGLMARMIQHECDHLDGHVYLDRLEKDVRKQALRQLR 157 >gi|303271927|ref|XP_003055325.1| peptide deformylase [Micromonas pusilla CCMP1545] gi|226463299|gb|EEH60577.1| peptide deformylase [Micromonas pusilla CCMP1545] Length = 210 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 84/146 (57%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + +P LR ++ I ++++ L D M MY +DG+GLAA Q+GV YRL+V + Sbjct: 38 EIQKYPSAKLRDENKKIGVFDAELKKLADAMFAKMYESDGVGLAAPQVGVNYRLMVYNEA 97 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +V +NPKI+ FS + +++EGCLS P ADV+R +T+ + N + + Sbjct: 98 GERGKGAEVVMVNPKIVKFSKEKDMFEEGCLSFPAIYADVERPTAVTIEAQNVNGKKFKM 157 Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150 DG A QHE DHL+G+LF D + Sbjct: 158 TLDGFQARVFQHEYDHLDGVLFHDRM 183 >gi|84500578|ref|ZP_00998827.1| peptide deformylase [Oceanicola batsensis HTCC2597] gi|84391531|gb|EAQ03863.1| peptide deformylase [Oceanicola batsensis HTCC2597] Length = 165 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +PD LR + + + + +M++ M + G+GLAAVQIGV+ RL V Sbjct: 1 MAVRPILRWPDRRLRAAAADVVDVTDAVRATWADMIDTMEAMPGVGLAAVQIGVMQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+++ S + ++E +P A + R +TVR+++ Sbjct: 61 VDAS--GERGQAVRMANPEVLHASVEPRDHEEASPCLPGVSARITRPRAVTVRFLNAEGA 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL AT +QH++DHL G ++ D LS++KRDM+ ++ K Sbjct: 119 VEERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARK 162 >gi|229817674|ref|ZP_04447956.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM 20098] gi|229785463|gb|EEP21577.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM 20098] Length = 160 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++L+ + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLQTVDDPGRAGLSANQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP I S + EGCLS+P +R+ + VR +D + + Sbjct: 61 YNIDGKIGY-----ILNPVIEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++ GL LQHE DHL+G +++D L + +R + M Sbjct: 115 EIVLEGHGLFGRMLQHECDHLDGHVYLDRLEKEERREAMRYMRNH 159 >gi|38234602|ref|NP_940369.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129] gi|38200866|emb|CAE50571.1| peptide deformylase [Corynebacterium diphtheriae] Length = 187 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 7/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P+VI DP+L + P+ +++ +LI +M E M + G+GLAA Q+GV RL V Sbjct: 1 MIRPIVICGDPVLHNPTAPVSDP-AEVQDLIADMYETMEAARGVGLAANQVGVGLRLFVF 59 Query: 62 DLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + D + INP + T D EGCLS+P R+ + V + Sbjct: 60 NCPDDEGHFHRGCVINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWARVTGL 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + G LA C QHE+ HL+G L+ D L + K + + Sbjct: 120 EADGTPVVYEGTGFLARCFQHEVGHLDGFLYTDTLIGRWKRQAKKAIKR 168 >gi|121604720|ref|YP_982049.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] gi|120593689|gb|ABM37128.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] Length = 179 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 7/160 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ D L RV++P+ + ++ L+ +M M S DG GLAA QIGV ++V Sbjct: 1 MTIREILKMGDARLLRVAKPVTAFDTDELHVLVSDMFYTMQSVDGAGLAAPQIGVDLQVV 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A V +NP I S D EGCLS+P R V R + I Sbjct: 61 IFGSDQLNPRYPAAPVVPRTVLVNPVITPLSADEESDWEGCLSVPGLRGMVPRFSHIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D DG A +QHE DHL G L+ + L Sbjct: 121 GFDQYGDPIDRTVDGFHARVVQHECDHLIGKLYPMRIRDL 160 >gi|75911263|ref|YP_325559.1| formylmethionine deformylase [Anabaena variabilis ATCC 29413] gi|75704988|gb|ABA24664.1| Formylmethionine deformylase [Anabaena variabilis ATCC 29413] Length = 179 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 6/168 (3%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++ +P LR+ + +E I ++ I LID+++ + +G+G+A+ Q+ YRL ++ Sbjct: 7 PIIQLGNPTLRQKAAWVENIHDAAIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIVAS 66 Query: 64 QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + + P INPKI+ S + EGCLS+P R V R I V Y D Sbjct: 67 RPNPRYPHAPVMEPTAMINPKIVGSSTEIVKGWEGCLSVPGIRGLVPRHQAIEVEYKDRY 126 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q +A QHE DHL+G+LFID + + ++ K+V Sbjct: 127 GNLQKQTLTDFVARIFQHEFDHLDGVLFIDRVESNLNIITEEEYQKIV 174 >gi|182411922|ref|YP_001816988.1| peptide deformylase [Opitutus terrae PB90-1] gi|238692904|sp|B1ZMD5|DEF_OPITP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|177839136|gb|ACB73388.1| peptide deformylase [Opitutus terrae PB90-1] Length = 192 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 71/183 (38%), Positives = 96/183 (52%), Gaps = 16/183 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V + DP+LRR I + + L ML M GIGLAA QIG +L V Sbjct: 1 MSLR-IVHYNDPVLRRKGEKITAFDKALSQLAKEMLATMQEAAGIGLAAQQIGRPVQLCV 59 Query: 61 IDLQ--------DHAHRKNPMVFINPKIITFSD-----DFSVY--QEGCLSIPDYRADVK 105 +DL+ + K P+ I P IIT + + VY +EGCLS P R DV Sbjct: 60 VDLRRAEIDFTWELDGAKPPLDLIMPMIITNPEITPDRETDVYLVEEGCLSFPKIRGDVP 119 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 R ITVRY D + ++ DGLLA C+QHE+DHLNG+LFID + + R I + L Sbjct: 120 RPDAITVRYQDEHGTPHTLHCDGLLARCIQHEVDHLNGVLFIDRMEKKTRAAIDADVKTL 179 Query: 166 VQL 168 ++ Sbjct: 180 AKI 182 >gi|15639744|ref|NP_219194.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025982|ref|YP_001933754.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14] gi|6014952|sp|O83738|DEF_TREPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238689341|sp|B2S3Z6|DEF_TREPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|3323063|gb|AAC65724.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018557|gb|ACD71175.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14] gi|291060119|gb|ADD72854.1| peptide deformylase [Treponema pallidum subsp. pallidum str. Chicago] Length = 162 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 5/157 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P L VS P+ +++ + I M VM G+GLAA Q+G R+ V+D++ Sbjct: 6 LGEPCLTTVSEPVSEVDEQLRAFISGMFRVMRGAGGVGLAAPQVGRTVRVFVVDVE---- 61 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + FINP+I S++ S Y+EGCLSIP V R ++V+Y+D N + + ADG Sbjct: 62 -HHVRAFINPQITAASEEQSSYEEGCLSIPHIYERVLRPRRVSVQYLDENGKRCAVDADG 120 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +LA +QHE DHL+GILF+D + +RD ++ + L Sbjct: 121 ILARVIQHEYDHLDGILFLDRIDEKRRDDALRRYAAL 157 >gi|154497980|ref|ZP_02036358.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC 29799] gi|150272970|gb|EDN00127.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC 29799] Length = 175 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 5/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ DP+L + + + + + L+D+M+E + + G+GLAA QIG+L R+VV Sbjct: 12 MALRTIITKGDPVLSKKAHLVTNFDEKLAILLDDMVETLRDSGGVGLAAPQIGILRRVVV 71 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + +NP+II + V EGCLS+P V R V+ + + Sbjct: 72 V----INDEDQVIELVNPEIIATEGE-QVGFEGCLSVPGRWGKVARPMKARVKAQNRQGE 126 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + +GL A C HELDHL+G LF + +L Sbjct: 127 WFEVEDEGLTARCFCHELDHLDGHLFTELTDKL 159 >gi|326329902|ref|ZP_08196217.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] gi|325952293|gb|EGD44318.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] Length = 204 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 3/168 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P+ + P++ R + +E + + L +M+ MY+ +G+GLAA QIG + V D Sbjct: 24 VRPITRWGTPVMHRPKKQVEVFDDALTELAADMVATMYAAEGVGLAADQIGEDVAIFVFD 83 Query: 63 LQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D R+ V NP + D V EGCLS P D R + V + + Sbjct: 84 CPDATGRRTVGVVCNPVLTLPEGDDRHLDVDLEGCLSFPGAFVDCGRPDWAAVDGLGLDG 143 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +GLLA CLQHE DH NG +F D +S R +TK+ ++ Q Sbjct: 144 QPVHFEGNGLLARCLQHETDHTNGTVFGDRISAKARKKLTKEHDRVAQ 191 >gi|255323209|ref|ZP_05364344.1| peptide deformylase [Campylobacter showae RM3277] gi|255299732|gb|EET79014.1| peptide deformylase [Campylobacter showae RM3277] Length = 170 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 100/167 (59%), Gaps = 5/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L S ++ + ++ +D+M E M + +GIGLAA+Q G R+++I Sbjct: 1 MILEILTYPNKKLFVKSLEVKAFDENLHKFLDDMYETMIAKNGIGLAAIQTGEAKRILII 60 Query: 62 DLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +L D +++ + INPKI+ + +YQEGCLS+P Y DVKR+ FIT+ Y D Sbjct: 61 NLVDEESKEQRKEDLLEIINPKILRKEGEI-IYQEGCLSVPGYYEDVKRAEFITLEYQDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + ADGLL+ +QHE+DHL+G LFI+ + KR K+ K Sbjct: 120 FGERKELEADGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKK 166 >gi|205373320|ref|ZP_03226124.1| peptide deformylase [Bacillus coahuilensis m4-4] Length = 161 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V P+ +L + + + + + L+DNM + M DG+GLAA QIG + + Sbjct: 1 MPVLPIVFHPNEVLEKECKRVTIFDKKLRKLLDNMYDTMIEADGVGLAAPQIGQDISVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + +NP+I+ + EGCLS P+ + R A++ V+ D + Sbjct: 61 VDIGDDSGIIE---LVNPEILETNG-IETDIEGCLSFPNLYGTLTRPAYVKVKAQDRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A+G LA +QHE+DHL+G+LF + R Sbjct: 117 AYTIEAEGFLARAIQHEIDHLHGVLFTSKVER 148 >gi|226361306|ref|YP_002779084.1| peptide deformylase [Rhodococcus opacus B4] gi|254767598|sp|C1B0D9|DEF_RHOOB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|226239791|dbj|BAH50139.1| peptide deformylase [Rhodococcus opacus B4] Length = 196 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 9/173 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L + + + +++ LI +M + M + +G+GLAA Q+G+ RL V Sbjct: 1 MAILPIRIVGDPVLHEPTETVSESPAELSELIADMYDTMDAANGVGLAANQVGIPLRLFV 60 Query: 61 IDLQDHAHRKNPM----VFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFIT 111 D D P +NP + T D EGCLS+P + R+ + Sbjct: 61 YDCPDVDETGKPFRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGRAEWAK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V D + I A LQHE+ HL+G L++D L K + + Sbjct: 121 VTGTDADGNAVEIEGRDFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKR 173 >gi|325068970|ref|ZP_08127643.1| peptide deformylase [Actinomyces oris K20] gi|326773171|ref|ZP_08232454.1| peptide deformylase [Actinomyces viscosus C505] gi|326636401|gb|EGE37304.1| peptide deformylase [Actinomyces viscosus C505] Length = 163 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DPILR I I+ + L++++LE + GLAA QIG+ R Sbjct: 1 MAYRDIRIIGDPILRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NPKI+ S D++ EGCLS+P +R+ + +D + Sbjct: 61 WNIDGEIGY-----ILNPKIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ++ + L+A C+QHE DHL G L++D L R R K++ Sbjct: 116 KEVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAKAMKELRA 160 >gi|223040084|ref|ZP_03610365.1| peptide deformylase [Campylobacter rectus RM3267] gi|222878670|gb|EEF13770.1| peptide deformylase [Campylobacter rectus RM3267] Length = 170 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 100/167 (59%), Gaps = 5/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L S ++ + ++ +D+M E M + +GIGLAA+Q G R++++ Sbjct: 1 MILEILTYPNKKLFVKSLEVKVFDEELHKFLDDMYETMIAKNGIGLAAIQTGEAKRILIV 60 Query: 62 DLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +L D +++ + INPKI+ + +YQEGCLS+P Y DVKR+ FIT+ Y D Sbjct: 61 NLFDEESKEQRKEDLLEIINPKILRKEGEI-IYQEGCLSVPGYYEDVKRAEFITLEYQDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q + + A+GLL+ +QHE+DHL+G LFI+ + KR K+ K Sbjct: 120 FGQRRELEAEGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKK 166 >gi|270692640|ref|ZP_06222945.1| peptide deformylase [Haemophilus influenzae HK1212] gi|270316024|gb|EFA28060.1| peptide deformylase [Haemophilus influenzae HK1212] Length = 132 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 89/134 (66%), Gaps = 3/134 (2%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M + MY GIGLAA Q+ +L R++ ID++ ++N V INP+I+ + + +EGC Sbjct: 1 MFDTMYQEKGIGLAAPQVDILQRIITIDVE--GDKQNQFVLINPEILASEGETGI-EEGC 57 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 LSIP +RA V R +TVR +D + + + ADGLLA C+QHE+DHLNGILF+D+LS LK Sbjct: 58 LSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 117 Query: 155 RDMITKKMSKLVQL 168 R I +K+ K + Sbjct: 118 RQRIKEKLLKYKKQ 131 >gi|58176979|pdb|1V3Y|A Chain A, The Crystal Structure Of Peptide Deformylase From Thermus Thermophilus Hb8 gi|58176980|pdb|1V3Y|B Chain B, The Crystal Structure Of Peptide Deformylase From Thermus Thermophilus Hb8 Length = 192 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 14/171 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60 + P+ ++ DP+LRR +RP+E S I L ++MLE M+ G+GLAA QIG+ RL V Sbjct: 1 MVYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVA 59 Query: 61 --IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAF 109 + + P+ V NP I T+ + EG LS+P Y +V R+ Sbjct: 60 VEYADEPEGEEERPLRELVRRVYVVANPVI-TYREGLVEGTEGXLSLPGLYSEEVPRAER 118 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I V Y D + +++ +G +A QHE+DHL+GILF + L + KR+ + Sbjct: 119 IRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLE 169 >gi|111222219|ref|YP_713013.1| peptide deformylase 2 [Frankia alni ACN14a] gi|111149751|emb|CAJ61443.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [Frankia alni ACN14a] Length = 190 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 5/165 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ DP+LR + + ++ + L+ +M++ MY G+GLAA QIGV R+ V D+ Sbjct: 3 PIRTVGDPVLRTPTALVTTFDAALARLVHDMIDTMYDAPGVGLAAPQIGVGLRVFVFDVG 62 Query: 65 DHAHRKNPMVFINPKI-----ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + + QEGCLS+P R+ +VR +D Sbjct: 63 YDPRDVTVPRVPRVVVNPVLELAADGEQQEGQEGCLSVPGLHFSTTRALRASVRGVDVTG 122 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +GLLA C QHE+DHL+G L++D L+ +R + + + Sbjct: 123 AAVEYAGEGLLARCFQHEVDHLDGTLYLDRLTGEERRAAVQALRE 167 >gi|320533868|ref|ZP_08034450.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337] gi|320133894|gb|EFW26260.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337] Length = 175 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+LR I I+ + L++++LE + GLAA QIG+ R Sbjct: 13 MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NP+I+ S D++ EGCLS+P +R+ + +D + Sbjct: 73 WNIDGEIGY-----ILNPRIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDG 127 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ++ + L+A C+QHE DHL G L++D L R R K++ Sbjct: 128 REVVVEGEELMARCIQHECDHLEGRLYLDRLDRKNRAKAMKELRA 172 >gi|186476100|ref|YP_001857570.1| peptide deformylase [Burkholderia phymatum STM815] gi|184192559|gb|ACC70524.1| peptide deformylase [Burkholderia phymatum STM815] Length = 177 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L R+++P++ + ++ L+ +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIHEILKMGDPRLLRIAKPVDHFDTPELHELVRDMFETMHDANGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGHNERYPDAPSVPETVLINPTITPVSLDTEEGWEGCLSVPGLRGAVSRLSMIRYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A+G A +QHE DHL G L+ ++ + T+ + Sbjct: 121 DQFGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAKFGFTEVL 167 >gi|297538577|ref|YP_003674346.1| peptide deformylase [Methylotenera sp. 301] gi|297257924|gb|ADI29769.1| peptide deformylase [Methylotenera sp. 301] Length = 182 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 11/165 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ +P L + P+EK + ++ +LI ++ + M + +G G+AA QIG R+V Sbjct: 1 MAVKPVLRMGEPCLLLKAAPVEKFDTPELHSLIQDLEDTMQAMNGAGIAAPQIGESLRVV 60 Query: 60 VIDLQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 + + KNP V INP I DD EGCLS+P R V R Sbjct: 61 IFGQKSSDENKNPRYPDADAVPYTVLINPVITPIGDDVEDGWEGCLSVPGMRGIVPRYLR 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + D G A +QHE DHL+G+L+ + LK Sbjct: 121 LHYAGFDQYGNPIDRLVSGFHARVVQHECDHLDGVLYPMRIKNLK 165 >gi|33864860|ref|NP_896419.1| peptide deformylase [Synechococcus sp. WH 8102] gi|39930836|sp|Q7U9D4|DEF_SYNPX RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33632383|emb|CAE06839.1| putative formylmethionine deformylase [Synechococcus sp. WH 8102] Length = 201 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 2/159 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + +LR+ +R I K+ L +ML MY+ GIGLAA Q+G+ +L+VIDL Sbjct: 32 EIHTLGAEVLRQSARRIGKVTEQTRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLD 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP+I S Y+EGCLSIP DV R I + + D + + + Sbjct: 92 LENAATPPLVLINPEISAASASIDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKM 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ADGL+A C+QHE+DHLNG+LF+D ++ + K++ Sbjct: 152 KADGLMARCIQHEMDHLNGVLFVDRVTDEA--GLQKELK 188 >gi|158336649|ref|YP_001517823.1| peptide deformylase [Acaryochloris marina MBIC11017] gi|158306890|gb|ABW28507.1| peptide deformylase [Acaryochloris marina MBIC11017] Length = 176 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 6/171 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +++ ++ +P LR+ + P++ +I +LID+++ M ++G+G+AA Q+G+ ++V+ Sbjct: 4 MQREVLQLGNPKLRQTACPVQNPTDLEIQSLIDDLIGTMEESNGVGIAAPQVGIDLQVVI 63 Query: 61 IDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + HA +P+ INP I + EGCLS+P R V R++ I+V Y Sbjct: 64 VASRPTLRYPHAPHMDPIAMINPHITPIGAERVKDWEGCLSVPGIRGLVPRASTISVEYQ 123 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 D N Q Q +A +QHE DHL G +FID + + + + KLV Sbjct: 124 DRNGQAQTEIFQDFVARIIQHECDHLQGYVFIDRVESTRELITENEYHKLV 174 >gi|237654289|ref|YP_002890603.1| peptide deformylase [Thauera sp. MZ1T] gi|237625536|gb|ACR02226.1| peptide deformylase [Thauera sp. MZ1T] Length = 174 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + L+ D L + + P+ + + LI+++ + M + G+GLAA QIGV ++V Sbjct: 1 MAVRTLLRMGDARLLQPAAPVGEFGTPALAALIEDLFDTMAAHGGVGLAAPQIGVGLQVV 60 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + + + +NP I+ +++ EGCLS+P R V R+ I Sbjct: 61 IFGFERSERYPDAAPVPRTILLNPVIVPLTEEREEGWEGCLSVPGLRGMVPRATRIRYTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + +A+G A +QHE DHL G+L+ + +R T Sbjct: 121 YTPAGEPIERFAEGFHARVVQHECDHLAGVLYPMRVRDFRRFGFT 165 >gi|325290451|ref|YP_004266632.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271] gi|324965852|gb|ADY56631.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271] Length = 150 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V + ILR ++ ++KI +I+ L++N+ + +Y++ G+GLAA QIG+ R+ V Sbjct: 1 MAVYQIVKMGEDILREKAQEVKKITPNILKLLENLTDTLYASQGVGLAAPQIGISKRVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D INP II + + +EGCLSIP + +VKRSA + V+ D Sbjct: 61 VDIGD-----GLFELINPVIIERYGE-EIDKEGCLSIPGIQGEVKRSAKVVVQCQDREGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +G LA QHE+DHL+G+LF+D + + Sbjct: 115 LVQYAGEGFLARAFQHEIDHLDGVLFVDLAPEVYK 149 >gi|311068093|ref|YP_003973016.1| peptide deformylase [Bacillus atrophaeus 1942] gi|310868610|gb|ADP32085.1| peptide deformylase [Bacillus atrophaeus 1942] Length = 160 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKPIVTHPAEVLETPAEAVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + INP+I+ S EGCLS PD +V R ++ V+ + + Sbjct: 61 VDIGEESGRID---LINPEILE-SGGKQTGIEGCLSFPDLYGEVTRPDYVKVQAYNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFVFEATGFLARAVQHEMDHLDGVLFTSKVSK 148 >gi|91775819|ref|YP_545575.1| peptide deformylase [Methylobacillus flagellatus KT] gi|91709806|gb|ABE49734.1| Peptide deformylase [Methylobacillus flagellatus KT] Length = 177 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ +P+L + + P+++ + ++ LI +M + M +G G+AA QIGV R+V Sbjct: 1 MPVKPVLKMGEPLLLQKAEPVQQFDTPELHALIKDMEDTMAHLNGAGIAAPQIGVSLRVV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + A + V +NP + ++ EGCLS+P R V R + Sbjct: 61 IFGVGHNPRYPDAEQVPYTVLVNPTLTPIGEELEDGWEGCLSVPGMRGIVPRYQRLHYTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D G A +QHE DHL+GIL+ + L + T Sbjct: 121 YDQYGNPIDRLVSGFHARVVQHECDHLDGILYPMRIRDLAQFGFT 165 >gi|207723348|ref|YP_002253747.1| polypeptide deformylase (partial sequence) protein [Ralstonia solanacearum MolK2] gi|206588547|emb|CAQ35510.1| probable polypeptide deformylase (partial sequence) protein [Ralstonia solanacearum MolK2] Length = 181 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 V +P++ D L RV++ +++ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 5 VIRPILKMGDSRLLRVAQSVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 64 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + V INP I SD+ EGCLS+P R V R + Sbjct: 65 FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGY 124 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + A+G A +QHE DHL GIL+ + R T+ Sbjct: 125 DQHGHAIDRVAEGFHARVVQHECDHLQGILYPMRVRDFTRFGFTE 169 >gi|121610540|ref|YP_998347.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] gi|121555180|gb|ABM59329.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] Length = 186 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ DP L R++RP+ +++ + L+ +ML+ M+ +G GLAA QIGV +LV Sbjct: 1 MTIHRILKMGDPRLLRIARPVTGFDTEALHGLVRDMLDTMHDANGAGLAAPQIGVDLQLV 60 Query: 60 VIDLQDHAHR---KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V +H R + P+ V +NP I D EGCLS+P R V R + I Sbjct: 61 VFGSGEHNPRYPGRPPVPLTVLLNPVITPLGQDEKEDWEGCLSVPGLRGMVPRWSRIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D DG A +QHE DHL G L+ + ++ T+ + Sbjct: 121 GVDPYGHPIDRSVDGFHARVVQHECDHLVGKLYPMRVRDFRQFGFTQVL 169 >gi|113955292|ref|YP_731667.1| peptide deformylase [Synechococcus sp. CC9311] gi|122945537|sp|Q0I7A5|DEF_SYNS3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|113882643|gb|ABI47601.1| peptide deformylase [Synechococcus sp. CC9311] Length = 202 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 3/159 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + D LR +R I K++ + +L +ML MY+ GIGLAA Q+GV +L+VI Sbjct: 29 APLDIHTLGDDALRGDARRIGKVDERVRDLARDMLRSMYTASGIGLAAPQVGVHQQLLVI 88 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL P+V INP+I T S Y+EGCLSIP DV R I + + D + Sbjct: 89 DLDFETPSTPPLVLINPEITTCSASVDTYEEGCLSIPGVYLDVVRPTAIQLSFRDEMGRP 148 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRDM 157 + + ADGL+A C+QHE+DHL G+LF+D ++ LK+++ Sbjct: 149 RTMKADGLMARCIQHEMDHLRGVLFVDRVTDAGGLKKEL 187 >gi|313672170|ref|YP_004050281.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] gi|312938926|gb|ADR18118.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] Length = 168 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 101/168 (60%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + ++ +P+P L+ +S + KI+ + ++I ++ + M +G+AA QIG L R++ Sbjct: 1 MAIREVLTYPNPKLKEISEEVLKIDDYVRSVITDLKDTMEDAGHSVGIAAPQIGELIRVI 60 Query: 60 VIDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+D + P V INP+II + + + ++EGC+S+PDY +V R+ I V+++D Sbjct: 61 VVDPSKNPKCKEHHGPNVMINPEIIKW-EGLTQFREGCMSVPDYTGNVTRAEKILVQFLD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 N + ++ +G A +QHE+DHL+G+LFID + + D+ +K K Sbjct: 120 ENGEQKVFETEGFEAILIQHEIDHLDGVLFIDRIISKRTDLFKRKNYK 167 >gi|331004325|ref|ZP_08327800.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167] gi|330411391|gb|EGG90806.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167] Length = 169 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + + ++ +N LI++M++ M +G+GLAA QIGVL R+VV Sbjct: 1 MAIRAIRVIGDSVLNKKCKEVKAVNDRTKVLIEDMIDTMREANGVGLAAPQIGVLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+++ +N V INP I+ + EGCLS+P VKR + V+ D + Sbjct: 61 IEIEP----ENVYVLINPVILEQYGE-QEGYEGCLSVPGKSGIVKRPNHVKVKAFDIDMN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA + HE HL G L++D + Sbjct: 116 EYTLEGEGLLARAICHECAHLEGELYVDLVE 146 >gi|226940980|ref|YP_002796054.1| Peptide deformylase [Laribacter hongkongensis HLHK9] gi|226715907|gb|ACO75045.1| Peptide deformylase [Laribacter hongkongensis HLHK9] Length = 183 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 70/166 (42%), Gaps = 7/166 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L + P+ + L++++ E M G GLAA QIG ++V Sbjct: 1 MSIRTVIKMGDPRLLLSAEPVTAFGTPQLTRLVEDLWETMKVHSGAGLAAPQIGENLQVV 60 Query: 60 VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V + R P V INP + EGCLS+P R V R A + + Sbjct: 61 VFGTGEPNPRYPDAGIVPPTVLINPIVTPLGASMEDGWEGCLSLPGLRGAVPRYASVRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D Q +G A +QHE DHL G L+ + + R T Sbjct: 121 GFDLYGQPIDRTVEGFHARVVQHECDHLWGFLYPMRMKDMSRFGFT 166 >gi|89898499|ref|YP_515609.1| peptide deformylase [Chlamydophila felis Fe/C-56] gi|123722301|sp|Q253S4|DEF_CHLFF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|89331871|dbj|BAE81464.1| polypeptide deformylase [Chlamydophila felis Fe/C-56] Length = 186 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + ILRR + I +I I L+ +M E M + G+GLAA Q+G L V+ Sbjct: 1 MIRELEYYGSHILRRKADIIPEITDTIRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVV 60 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ + P V+INP + S+D + +EGCLSIP RADV R ITV + Sbjct: 61 CVEGETEDGDLIFCDFPKVYINPVLSNASEDLVIGREGCLSIPGLRADVYRPQSITVTAL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167 + + Q + +G A + HE DHL+G+L+ID + K + K+ + Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLHGVLYIDKMEEPKDIKKFKASLEKIRR 173 >gi|237785573|ref|YP_002906278.1| peptide deformylase [Corynebacterium kroppenstedtii DSM 44385] gi|237758485|gb|ACR17735.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385] Length = 178 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + IF DP+L + + + + L+D+M+E M G GLAA Q+GVL R+ V Sbjct: 1 MSLRRIRIFGDPVLTTPAEQVTDFDEPLGILVDDMMETMDHYRGAGLAANQVGVLRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP D+ EGCLS+P A+ +R ++V + Sbjct: 61 YNCGGRRG-----HIVNPVWKHEGDETQYGPEGCLSVPSIHANTRRWMNVSVTGQTVDGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ADG+LA C+QHE DHL+G++++ L R ++ Sbjct: 116 PVSFSADGILARCIQHETDHLDGVMYMRRLEPEIRKETMAQIR 158 >gi|124516548|gb|EAY58056.1| Peptide deformylase [Leptospirillum rubarum] gi|206603377|gb|EDZ39857.1| Peptide deformylase [Leptospirillum sp. Group II '5-way CG'] Length = 184 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 8/173 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + +PILR+++ PI + +D+M+E M +DG+GLAA Q+ V + Sbjct: 1 MALLKIAKMGNPILRKIAEPISPKEIETDEFQTFVDDMIETMRDSDGLGLAAPQVHVSKQ 60 Query: 58 LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +VVI D A +V INP S + EGCLS+ + R V RS + + Sbjct: 61 VVVIESMENDRYPDAPPIPLLVLINPVFKYMSKETRTGWEGCLSVDNLRGKVTRSRAVKM 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +D + + + A LQHE DHL G LF+D + + ++ K Sbjct: 121 EALDRHGNTITLEWEDFPAVVLQHETDHLRGHLFLDRMKDMSTLTQLEEFQKF 173 >gi|319760357|ref|YP_004124295.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF] gi|318039071|gb|ADV33621.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF] Length = 168 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+ ++ + KI+ +I +M + MY+ GIGLAA Q+ + +++V Sbjct: 1 MSILKILHYPDKRLRKTAKFVSKISKHTKRIIFDMFDTMYAQQGIGLAATQVDIDQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + +VFINP II EGCLSIP + + RS I VR ++ + Sbjct: 61 IDL--YQNITQRLVFINPIIIKKIGIIHTV-EGCLSIPKIKESIPRSKQIIVRSLNQDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I A LL+ C+QHE+DHL G LFID+LS LK I KK+ K +L Sbjct: 118 IFEITATDLLSVCIQHEIDHLLGKLFIDYLSPLKIKRINKKIQKWTKL 165 >gi|269219486|ref|ZP_06163340.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211065|gb|EEZ77405.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332] Length = 161 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR PI++I + L+++++E + GLAA QIGV R Sbjct: 1 MTFRPIRIVGDPVLRTPCSPIDEITPGVKALVEDLVENVDMDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +++ +NP I+ SD +F +EGCLS+PD KRS + D + Sbjct: 61 WNIEGEIGY-----ILNPVIVELSDDEFQDGEEGCLSVPDLWFPTKRSLYARAEGTDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + +++ +GL+ C+QHE+DHL+G L+ID L R R + + L Sbjct: 116 RKKVVEGEGLMGRCIQHEVDHLDGHLYIDRLDRETRKKAMRAIRDL 161 >gi|261367360|ref|ZP_05980243.1| peptide deformylase [Subdoligranulum variabile DSM 15176] gi|282570120|gb|EFB75655.1| peptide deformylase [Subdoligranulum variabile DSM 15176] Length = 171 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 7/163 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL++V RP+ K + + L+D+M E + + +G+GLA Q+G++ RL + Sbjct: 1 MALRTIVQDGDPILKKVCRPVTKFDDRLRILLDDMKETLLAANGLGLAGPQVGMMRRLFI 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + P + FINP+I+ SD+ EGCLS P + + RS + V+ Sbjct: 61 CLDERDMPEEVPENYEYKFIEFINPEILELSDEKVELYEGCLSFPGHNGAISRSKHVKVK 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 D + + + AD +LA C+QHE +HL+GI +D + D Sbjct: 121 AQDRHGEWFEMEADDMLARCIQHENNHLDGITIMDLATHFYED 163 >gi|156743414|ref|YP_001433543.1| peptide deformylase [Roseiflexus castenholzii DSM 13941] gi|254767599|sp|A7NPM9|DEF_ROSCS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|156234742|gb|ABU59525.1| peptide deformylase [Roseiflexus castenholzii DSM 13941] Length = 185 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 16/169 (9%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ +P IL P+ N + L+ +M E M++ +G+GLAA QIGV Sbjct: 1 MGLRHILRIDNPDEKKILTTRCHPVRMPNPSLKQLVADMFETMHAANGVGLAAPQIGVTQ 60 Query: 57 RLVVIDLQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 RL VI + + V INP+I+ SD V EGCLS+P + +V Sbjct: 61 RLAVIAIPPMMEERPDGTKVEVAPEQTFVLINPEIVKASDQEDVGLEGCLSLPGWYGEVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRL 153 R+A++TV Y D N + Q I GLLA LQHE+DHL+G+LF + + L Sbjct: 121 RAAWVTVEYTDLNGRRQRIRRATGLLARALQHEIDHLDGVLFTERIRDL 169 >gi|167760430|ref|ZP_02432557.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704] gi|167661929|gb|EDS06059.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704] Length = 165 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L + + + KI LI++ML+ MY G+GLAA Q+GVL R+VV Sbjct: 9 MATRKIREIGDEVLTKPCKEVTKITLRTKVLINDMLDTMYEALGVGLAAPQVGVLKRIVV 68 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+II S + +EGCLS+P V R ++ VR ++ + + Sbjct: 69 IDVGE-----GPIVLINPEIIETSGE-QSGEEGCLSVPGKSGMVTRPDYVKVRALNEDME 122 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA HE+DHL+G +++D + Sbjct: 123 EIELEGEGLLARAFCHEIDHLDGRMYVDLVE 153 >gi|88859726|ref|ZP_01134366.1| peptide deformylase [Pseudoalteromonas tunicata D2] gi|88818743|gb|EAR28558.1| peptide deformylase [Pseudoalteromonas tunicata D2] Length = 168 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 69/171 (40%), Positives = 103/171 (60%), Gaps = 5/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M P++ DP L + + + + +LID++L+ +Y+T +GIGLAA QIG ++ Sbjct: 1 MAVLPILTAGDPFLAVPATAVTDV-KLVESLIDDLLDTLYATDNGIGLAATQIGRKEAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL A R P+V INP +++ + + GCLS+P YRADV R + V +D + Sbjct: 60 VIDLS--AERNQPLVLINPVVVSGEAEEKGEE-GCLSVPGYRADVVRYTHVVVEALDRSG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q I +D LA +QHE+DHL G LFID+LS LKR++ KK+ K V+ + Sbjct: 117 QAVRIDSDDFLAIVMQHEIDHLKGTLFIDYLSPLKRNIALKKVKKCVKEAN 167 >gi|154685988|ref|YP_001421149.1| peptide deformylase [Bacillus amyloliquefaciens FZB42] gi|154351839|gb|ABS73918.1| DefA [Bacillus amyloliquefaciens FZB42] Length = 160 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKIVTHPAEVLETPADEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + +NP I+ S + EGCLS P DV R ++ V+ D + Sbjct: 61 VDIGEESGRID---LVNPVILEKSGE-QTGVEGCLSFPGVYGDVTRPDYVKVKAYDRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I+ A+G LA +QHE+DHL+GILF ++ + +M Sbjct: 117 PFILEAEGFLARAVQHEMDHLDGILFTSKITAYYTEEELAEME 159 >gi|281355873|ref|ZP_06242367.1| peptide deformylase [Victivallis vadensis ATCC BAA-548] gi|281318753|gb|EFB02773.1| peptide deformylase [Victivallis vadensis ATCC BAA-548] Length = 197 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 12/175 (6%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+L+ +RP+E + +I L NM E + G+G+AA Q+G RLVV D+ + Sbjct: 13 TAGDPVLKAKARPVEAVTPEIRELACNMQEALRVFSGVGIAAPQVGESLRLVVFDIPVDS 72 Query: 68 HRKNPMV------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +NP V INP+I+ SD EGCLS+PD A V R A + R Sbjct: 73 MGENPTVGEQLLLPRMPLTVINPEIVASSDVLCESDEGCLSVPDIWAPVVRPATVVFRAT 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + GLL C+QHELDHL+G+LF+D +S I + + +L++ + Sbjct: 133 TLDGEVIECECGGLLGRCIQHELDHLDGVLFVDRVSPEAARTIERDLKQLIRYGE 187 >gi|308173535|ref|YP_003920240.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7] gi|307606399|emb|CBI42770.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7] gi|328553532|gb|AEB24024.1| peptide deformylase [Bacillus amyloliquefaciens TA208] gi|328911676|gb|AEB63272.1| polypeptide deformylase [Bacillus amyloliquefaciens LL3] Length = 160 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKIVTHPAEVLETPAEEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + +NP I+ S + + EGCLS P +V R ++ V+ D + Sbjct: 61 VDIGEESGRID---LVNPVILEKSGE-QIGVEGCLSFPGVYGEVTRPDYVKVKAYDRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I+ A+G LA +QHE+DHL GILF ++ + +M Sbjct: 117 PFIVEAEGFLARAIQHEMDHLEGILFTSKITAYYTEEELAEME 159 >gi|319949867|ref|ZP_08023877.1| polypeptide deformylase [Dietzia cinnamea P4] gi|319436469|gb|EFV91579.1| polypeptide deformylase [Dietzia cinnamea P4] Length = 223 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 22/185 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP L + P+ + +I +L+ ++ + M + +G+GLAA QIGV R+ V Sbjct: 1 MAVRPIVILGDPALHAPTEPVTESPEEIADLVRDLYDTMDAANGVGLAANQIGVRKRVFV 60 Query: 61 IDLQDHAHRKNPMV-----------------FINP-----KIITFSDDFSVYQEGCLSIP 98 D D V INP +I D EGCLS+P Sbjct: 61 YDCPDLDTEDGEGVSREEVEARGGWLNRRGCVINPVLETSEIPETMPDPEDDLEGCLSVP 120 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 R+ + V D + + + GL A CLQHE+ HL+G ++ DHL + Sbjct: 121 GVNFPRGRAWWARVTGTDEHGEPVSVEGYGLFARCLQHEVGHLDGFVYTDHLIGRNKKAA 180 Query: 159 TKKMS 163 + + Sbjct: 181 KRHIR 185 >gi|256394158|ref|YP_003115722.1| peptide deformylase [Catenulispora acidiphila DSM 44928] gi|256360384|gb|ACU73881.1| peptide deformylase [Catenulispora acidiphila DSM 44928] Length = 225 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 5/164 (3%) Query: 8 IFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + + +L R R + + ++++ L+D+M MY G+GLAA Q+GV R+ V D D Sbjct: 39 VVGEEVLHRPCREVAEFGTAELLQLVDDMFLTMYVAQGVGLAANQVGVDLRVFVYDCVDD 98 Query: 67 AHRKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 ++ +NPK+ + QEGCLS+P ++ R + +D + + Sbjct: 99 DGARHVGHIVNPKLDRTPEGGQRRLVEAQEGCLSVPGPTRELPRYDHAVLHGVDVHGEPL 158 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++ +G A CLQHE DHL G L+ID +++ R + ++M+++ Sbjct: 159 VLEGEGYFARCLQHETDHLEGTLYIDRMNKKTRRGVLEEMAEVA 202 >gi|189218929|ref|YP_001939570.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum V4] gi|238692077|sp|B3DUG9|DEF_METI4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189185787|gb|ACD82972.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum V4] Length = 190 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 15/182 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + LV++ +PILR+ PI+ + + L+ +MLE M G+GLAA Q+G+ +L VI Sbjct: 1 MILKLVLYDNPILRKKGMPIDSFDDRLKRLVQDMLETMAYYKGVGLAAQQVGLNLQLAVI 60 Query: 62 DL--------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 D+ P+ INP + +++ + EGCLS P R DV RS Sbjct: 61 DVSGSKLSSSLLIGGKPAMVEEHMPLFLINPTL-SYTQSKEISNEGCLSFPGLRIDVPRS 119 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + V+ D + A G L+ +QHE DHL G LFID+LS ++ I +++ K+ + Sbjct: 120 KRVKVKTFDLEGRPWYFEAGGFLSVAIQHEFDHLQGKLFIDYLSAEQKKAIKEELEKIKR 179 Query: 168 LR 169 Sbjct: 180 GE 181 >gi|169333675|ref|ZP_02860868.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM 17244] gi|169259669|gb|EDS73635.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM 17244] Length = 174 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 12/172 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D ILR+ S+ ++KI + LID+M E MY G+GLAAVQ+GVL R+V Sbjct: 1 MALRTIRITGDEILRKTSKEVKKITPRTLELIDDMFETMYDAQGVGLAAVQVGVLRRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D P+V INP+II S++ + EGCLS+P + R + V+ +D + Sbjct: 61 IDVGD-----GPVVLINPEIIYKSEEEYLEAEGCLSVPGEQGYTYRPEEVRVKALDRDGN 115 Query: 121 HQIIY-ADGLLATCLQHELDHLNGILFIDH-LSRLKRDMITKKMSKLVQLRD 170 +II D + + HEL+HL+GIL+ D ++ K +++ ++++ R+ Sbjct: 116 ERIIESKDRFFSKAICHELEHLDGILYTDKTVTPTK-----EQIDEIIKQRE 162 >gi|84514540|ref|ZP_01001904.1| peptide deformylase [Loktanella vestfoldensis SKA53] gi|84511591|gb|EAQ08044.1| peptide deformylase [Loktanella vestfoldensis SKA53] Length = 152 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 1/148 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M L DP+LR V+ P+ + D+ L+ ML MY+ G GLAA Q+GV R+ V Sbjct: 1 MAL-DLRFDGDPVLRAVAEPVTAFDEDLALLVAEMLATMYAAPGRGLAAPQVGVSQRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID +P F+NP+II S + E CLSIPD V R ++ +R+ D Sbjct: 60 IDTTWKDGDPDPQAFVNPQIIARSKTTATAVEACLSIPDRAFAVTRPIWVDMRWQDIAGD 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 Q DG+ A C+ HE DHL+G+L D Sbjct: 120 VQQGRFDGVAAICVCHEYDHLDGVLITD 147 >gi|328907667|gb|EGG27431.1| polypeptide deformylase [Propionibacterium sp. P08] Length = 200 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +P+L +RPI + + D+ LI +M M + DG+GLAA Q+GV L V Sbjct: 20 ALRRVTRWGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVY 79 Query: 62 DLQDHAHRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D + + F NP + EGCLS P + R T D Sbjct: 80 ACPDADNVVHHGAFCNPVVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPW 139 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A CLQHE DH NG++F D LS+ R + ++ + L Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQHDAVAHL 189 >gi|161833710|ref|YP_001597906.1| peptide deformylase [Candidatus Sulcia muelleri GWSS] gi|189083080|sp|A8Z5V9|DEF_SULMW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|152206200|gb|ABS30510.1| peptide deformylase [Candidatus Sulcia muelleri GWSS] Length = 189 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++I+ + LR+ I+K DI LI+NM + MY GIGL+A QIG+ RL +I Sbjct: 1 MILPIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + +K VFINP II + +EGCLSIP+ ++KR I + Y D N + Sbjct: 61 EYNNFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKK 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168 + +GLL+ +QHE DH+ G LFID++ LK +I K K+ KL +L Sbjct: 121 YKQHFNGLLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 176 >gi|291532990|emb|CBL06103.1| peptide deformylase [Megamonas hypermegale ART12/1] Length = 168 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 6/154 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + D +L++ ++PIE+I+ I L+D+M E MY +G+GLAA Q+G ++VVI Sbjct: 18 AILDIKKAGDLVLKQQAQPIERIDKTIRTLLDDMAETMYKANGVGLAAPQVGQSIQVVVI 77 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + INP II + + EGCLS+P+ +V+R+A ++V Y++ + Sbjct: 78 DVGE-----GLLELINPTIIRK-EGTEIDTEGCLSVPEIYGEVERAAKVSVEYLNRRGRR 131 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I A GLLA CLQHE+DHL+G LFID + L + Sbjct: 132 HRITATGLLARCLQHEIDHLHGRLFIDIANNLHK 165 >gi|300855374|ref|YP_003780358.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300435489|gb|ADK15256.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 156 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 3/155 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ F D +LR+VSR ++ I+ + + ++ ++ + +Y++ G+GL+A QIG+L R++ Sbjct: 1 MAVREILKFGDKLLRKVSRKVKNIDEETLGIVQDLKDTLYASSGVGLSAPQIGILKRIIF 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL +P+V INPKI+ + EGCLS + V R + V D N Sbjct: 61 IDLG--KENTDPVVLINPKIVKKMG-RNEGPEGCLSYNGHEGIVVRPKKVIVVGEDINGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A+GL A HE+DHL+G+L+ D ++ + Sbjct: 118 EVRYNAEGLFARAFCHEIDHLDGVLYTDKAKKVYK 152 >gi|159463814|ref|XP_001690137.1| peptide deformylase [Chlamydomonas reinhardtii] gi|158284125|gb|EDP09875.1| peptide deformylase [Chlamydomonas reinhardtii] Length = 248 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PDP LR V+ I + +M L M+E+MY DG+GLAA Q+GV RL+V + Sbjct: 58 IIKYPDPRLRAVNAKINVFDESLMRLAKEMIEIMYQDDGVGLAAPQVGVNVRLMVFNPMG 117 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 N + +NP+I+ + +EGCLS P DV+RS I V+ +D Q + Sbjct: 118 RDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQINVKALDATGQPVKLT 177 Query: 126 -ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D +A QHE DHL G+LF D + + + ++ L + Sbjct: 178 LTDPWVARIFQHEFDHLQGVLFHDRMKPSVLETVRPELVALEE 220 >gi|262091759|gb|ACY25348.1| peptide deformylase [uncultured actinobacterium] Length = 180 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 6/160 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + + DP+L ++ I I+ ++ L ++M VMY G+GLA QIGV ++ V D+ D Sbjct: 12 IRTYGDPVLAAMADEITNIDGKLVTLAEDMFRVMYQAPGLGLAGPQIGVQKQIFVYDVDD 71 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +P V INPKI+ S + VY EGCLSIP ++ R + V I Sbjct: 72 -----DPQVIINPKIVESSGE-WVYDEGCLSIPGLYVEMLRPKKVLVSGFTLEGDEVQIE 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA QHE+DHL G+L D + +R++ + +K+ Sbjct: 126 ADELLARLFQHEIDHLQGVLMFDRMLPDQRELAIVEYAKV 165 >gi|154252515|ref|YP_001413339.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] gi|154156465|gb|ABS63682.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] Length = 207 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 13/179 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + P+LR ++RP+ + ++ L+ +M+E M +G GLAA Q+ +R+V Sbjct: 1 MAIRKIARMGHPVLRGIARPVPDPTAPEVKALVRDMIETMIDANGAGLAAPQVYEPWRIV 60 Query: 60 VIDLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 V + H V INP++ +++ EGCLS+P R V R Sbjct: 61 VFQAPESRLPEGVDETEAFDHTAPLTVLINPEVEILTEEMEKGWEGCLSVPGLRGSVPRH 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + R N + A G A +QHE DHL+GIL+ + L + + + Sbjct: 121 TELRYRGYGLNGELIERRARGFHARVIQHECDHLDGILYPQRMDDLAELIFESEARAWL 179 >gi|291549493|emb|CBL25755.1| peptide deformylase [Ruminococcus torques L2-14] Length = 165 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L + +P+ K+ LI++ML+ MY G+GLAA Q+G+L ++VV Sbjct: 1 MAIREVREMGDDVLEKQCKPVTKMTLRTKILIEDMLDTMYEKMGVGLAAPQVGILKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S + +EGCLS+P V R ++ VR ++ N + Sbjct: 61 IDVGE-----GPIVLINPEIVETSGE-QTGEEGCLSVPGKWGIVTRPNYVKVRALNENME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I + LLA HE+DHL G L+++ + Sbjct: 115 EFEIEGEELLARAFCHEIDHLGGHLYVEKVE 145 >gi|295706332|ref|YP_003599407.1| peptide deformylase [Bacillus megaterium DSM 319] gi|294803991|gb|ADF41057.1| peptide deformylase [Bacillus megaterium DSM 319] Length = 157 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+ +L + ++ ++ + L++ M ++M DG+GLAA Q+GVL ++ V Sbjct: 1 MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + INP II + + EGCLS P DV R+ ++ VR + + Sbjct: 61 VDVDD---RHGKIELINPVIIEQRGE-QIGPEGCLSFPGLFGDVARADYVKVRAQNRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A G LA +QHE+DHL+G+LF + +++ Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148 >gi|148655206|ref|YP_001275411.1| peptide deformylase [Roseiflexus sp. RS-1] gi|254767600|sp|A5US58|DEF_ROSS1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148567316|gb|ABQ89461.1| peptide deformylase [Roseiflexus sp. RS-1] Length = 185 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 16/169 (9%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ +P IL P+ N + L+ +M E M++ G+GLAA QIG+ Sbjct: 1 MALRRILRIDNPDDKKILTTRCHPVRLPNPALKQLVADMFETMHAASGVGLAAPQIGITQ 60 Query: 57 RLVVIDLQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 RL VI + + V INP+II SD V EGCLS+P + +V Sbjct: 61 RLAVISIPPVVEERPDGSKVEVAPEQNFVLINPEIIKASDQEDVGLEGCLSLPGWYGEVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRL 153 R+A++TV Y D N + Q I GLL LQHE+DHL+GILF + + L Sbjct: 121 RAAWVTVEYTDLNGRRQRIRRATGLLGRALQHEIDHLDGILFTERIRDL 169 >gi|300934596|ref|ZP_07149852.1| polypeptide deformylase [Corynebacterium resistens DSM 45100] Length = 222 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 80/176 (45%), Gaps = 26/176 (14%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+VI DP+L ++P+E ++++ LI++M E M G+GLAA Q+GV Sbjct: 1 MTIMPIVIAGDPVLHNPTKPVELQEGKAPSAELTQLINDMYETMDRAHGVGLAANQVGVD 60 Query: 56 YRLVVIDLQDHAHRKNPMV----------------FINPK-----IITFSDDFSVYQEGC 94 RL V D + INP I D + +EGC Sbjct: 61 LRLFVYHCPDIEGADGERLTEEQIEANGGPMRRGCVINPTLETSDIPETMPDEEIDEEGC 120 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 LS+P Y R+ + V +D N Q + G A CLQHE+ HL+G L+ D L Sbjct: 121 LSVPGYSFPTGRADWARVTGLDENGQPITVEGYGFFARCLQHEVGHLDGFLYTDVL 176 >gi|254451672|ref|ZP_05065109.1| peptide deformylase [Octadecabacter antarcticus 238] gi|198266078|gb|EDY90348.1| peptide deformylase [Octadecabacter antarcticus 238] Length = 165 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +P LR + + +I DI L D M+ M + G+GLAA Q+GV RL V Sbjct: 1 MPHRPFIPWPAKALRTPAVEVTEITDDIRALWDEMINAMDAMPGVGLAAPQLGVSLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R + + NP I+ S + +++E ++P A ++R +TVR+M+ Sbjct: 61 VDASDK--RGSAIRMANPTILHASHELRLHEEASPNLPGLSASLERPRAVTVRFMNDAGM 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL+G ++ D LSR KRDM+ KK KL Sbjct: 119 YDRRDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163 >gi|107100575|ref|ZP_01364493.1| hypothetical protein PaerPA_01001600 [Pseudomonas aeruginosa PACS2] gi|254239493|ref|ZP_04932815.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192] gi|126192871|gb|EAZ56934.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192] Length = 179 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R+++P+ + ++ LID+M E M+ G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + + P + +NP+I D+ EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAPAVPPTILLNPRITLLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D Q +G A +QHE DHL G L+ ++ + T+ + Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTEVL 169 >gi|326202810|ref|ZP_08192677.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] gi|325986887|gb|EGD47716.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] Length = 151 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 7/157 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + D +LR+ RP+E++N I +L+ +M + MY T +G GLAA Q+G+L R + Sbjct: 1 MALRNIRTVEDEVLRKKCRPVEEVNDKIRDLLKDMADTMYDTGNGAGLAAPQVGILKRAI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D + +NP+II V EGCLSIP V R + V+ ++ Sbjct: 61 VIDMGD-----GLINLVNPEIIEQKGSQEVI-EGCLSIPGKWGKVIRPYEVRVKALNEKG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + +I +A CL HE+DHL+GILF D ++ ++ Sbjct: 115 EEVVIKGKKEMAKCLCHEIDHLDGILFTDKVTEYIKE 151 >gi|320537113|ref|ZP_08037086.1| peptide deformylase [Treponema phagedenis F0421] gi|320146038|gb|EFW37681.1| peptide deformylase [Treponema phagedenis F0421] Length = 167 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 85/156 (54%), Gaps = 5/156 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ + LR+ S P+E I +I +L+ M M DGIGLAA QIG R+ V + Sbjct: 2 EILYLGEESLRQKSIPVENITEEIKDLVQKMFVTMKIKDGIGLAAPQIGKNIRIFVTGVN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 VFINP+II S+ Y+EGCLSIP V R +TV+Y + + + + + Sbjct: 62 -----NEQRVFINPQIIETSEKVCSYEEGCLSIPQIYEKVVRPETVTVQYQNIDGRRKTL 116 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 GLLA +QHE DHL+G+LFID + R+ K Sbjct: 117 QTTGLLARVIQHENDHLDGVLFIDRIDEKLREEAIK 152 >gi|168180956|ref|ZP_02615620.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|182668254|gb|EDT80233.1| peptide deformylase [Clostridium botulinum NCTC 2916] Length = 178 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ F D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQFGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+ + + P++ INPK +EGCLS P Y V R + + ++ + Sbjct: 83 IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|50955168|ref|YP_062456.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951650|gb|AAT89351.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 163 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +F DP+L+ +S P+ +++ + +L+ ++++ + G+AA QIGV R Sbjct: 1 MTERQIRLFGDPVLKTLSEPVGELDESVRSLVQDLVDTVLPPGRAGVAAPQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP+++ S + + EGCLS+P R F VR +D + Sbjct: 61 YNVDGEVGY-----ILNPELVEVSGEPELVDEGCLSVPGLWFKTVRYPFARVRGIDLDGA 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G++A LQHE DHL G L++D L R R K++ + Sbjct: 116 EIELSGTGVMAQALQHETDHLEGKLYLDRLDRGSRREAMKQIRE 159 >gi|126640269|ref|YP_001083253.1| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii ATCC 17978] Length = 142 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M E MY+ GIGLAA Q+ +L+V+DL + + PMVFINPK+ +++ Y+EGC Sbjct: 1 MFETMYAAPGIGLAASQVDRHIQLIVMDLSES--KDEPMVFINPKVTPLTEETQPYEEGC 58 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 LS+P V R + + + ++ Q I ADGLLA C+QHE+DHLNG LF+D+LS LK Sbjct: 59 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 118 Query: 155 RDMITKKMSKLVQLRD 170 R +K+ K+V+ R+ Sbjct: 119 RQRAREKVEKIVRQRE 134 >gi|292670259|ref|ZP_06603685.1| peptide deformylase [Selenomonas noxia ATCC 43541] gi|292648211|gb|EFF66183.1| peptide deformylase [Selenomonas noxia ATCC 43541] Length = 156 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 4/160 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +P+L++ + PIE++ ++D+M E MY+ +G+GLAA QIG RLVV Sbjct: 1 MAILEIKKAGNPVLKQKAEPIERLTKRHRQMLDDMAETMYAANGVGLAAPQIGKSLRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D + +NP I T + V EGCLSIP DV+R+ +TV Y D ++ Sbjct: 61 IDVED---EHGLLELVNPVI-TMREGSVVDSEGCLSIPKVYGDVERAERVTVEYTDRRSR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + ADGLLA C+QHE DHL+G LFID L+++ + Sbjct: 117 RRTLTADGLLARCIQHECDHLDGRLFIDIAINLRKEEEKE 156 >gi|223936792|ref|ZP_03628702.1| peptide deformylase [bacterium Ellin514] gi|223894643|gb|EEF61094.1| peptide deformylase [bacterium Ellin514] Length = 191 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 17/180 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ + P+LR+ + ++ S+I I +M E MY + GIGLAA Q+ ++ V Sbjct: 1 MSLK-VIKYGHPVLRKKGEKVTRVTSEIKQFIKDMFETMYESRGIGLAAQQVARAVQITV 59 Query: 61 IDLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 ID++ R P+V INP++ EGCLS P+ A++ Sbjct: 60 IDVRGITDRPSTLELNGKPASVEKFMPLVLINPEVKPV-GPKVAGTEGCLSFPEIFAEIT 118 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 R + V M+ N + A GLLA +QHE DHLNGILFID + + + ++ +L Sbjct: 119 RPETVDVVAMNENGERIEFRAGGLLARAVQHETDHLNGILFIDRMDTETKQELKPELEEL 178 >gi|269792636|ref|YP_003317540.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100271|gb|ACZ19258.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 168 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 6/167 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + +FPDP+LR+ + ++ +L+ +M MY+ DG+GLAA Q+G+ L VID Sbjct: 8 VLKVRVFPDPVLRQPVEEVRDFGEELSDLLADMWATMYAKDGVGLAAPQVGISKSLAVID 67 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 H + V +NP+I++ D +EGCLS P +VKR + I +R+ D + Sbjct: 68 -----HHGDRYVVVNPQILSQ-DGEEEGEEGCLSFPGIFVNVKRPSRIRLRFQDETGAVK 121 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G +A HE+DHL G L IDH+S ++R MI +++K + R Sbjct: 122 EMELQGFIARVFLHEIDHLRGRLLIDHVSPIRRQMIKTRLAKRSEDR 168 >gi|294678912|ref|YP_003579527.1| peptide deformylase [Rhodobacter capsulatus SB 1003] gi|294477732|gb|ADE87120.1| peptide deformylase-1 [Rhodobacter capsulatus SB 1003] Length = 169 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 4/160 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRL 58 M +P + F D L + P+E I +I + +M++ M + G +GLAA QIGV+ RL Sbjct: 1 MAVRPFIRFDDKRLHTAAAPVEAITDEIRAIWADMVDTMEAMPGQGVGLAAPQIGVMLRL 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 V+D + R ++ NP+++ S + E ++P A + R +TVR+++ Sbjct: 61 AVVDASEA--RGQAILMANPEVLHASGQMREHDEASPNLPGVWATISRPRAVTVRFLNAA 118 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + + L AT +QH++DHLNG ++DHLS LKR M+ Sbjct: 119 GEIEERDFVHLWATSVQHQIDHLNGKTYVDHLSMLKRKML 158 >gi|269926311|ref|YP_003322934.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798] gi|269789971|gb|ACZ42112.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798] Length = 203 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 99/180 (55%), Gaps = 16/180 (8%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ +P +LR+ S P+ K +S++ L+++M+E M DG+GL+AVQ+G L Sbjct: 1 MAVRRILQMENPDDLSVLRKRSSPVTKFDSELRKLVEDMIETMREADGVGLSAVQVGDLR 60 Query: 57 RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 R+VV+++ + V INP+I S D QEGCLS+P A+V Sbjct: 61 RVVVMEMPGKYEQDEDGNQIEVSPPKLYVMINPEITKVSHDRIPMQEGCLSLPGRYAEVP 120 Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R+ ++ VRY D N + + + LL+ C+QHE+DHL+GILF + + ++ K Sbjct: 121 RAPWVEVRYKDLNGKEHKLLAEEQLLSQCIQHEVDHLDGILFTERIVDWSTFRDERQKQK 180 >gi|293189859|ref|ZP_06608573.1| peptide deformylase [Actinomyces odontolyticus F0309] gi|292821274|gb|EFF80219.1| peptide deformylase [Actinomyces odontolyticus F0309] Length = 163 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V PI +I ++ L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NP+I+ S D++ EGCLS+P+ +R+ + D +A Sbjct: 61 WNIDGEIGY-----VLNPRIVALSEDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDA 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + ++ + L+A C+QHE DHL+G ++ID L R R + + Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRATRKKALRDIR 159 >gi|294102012|ref|YP_003553870.1| peptide deformylase [Aminobacterium colombiense DSM 12261] gi|293616992|gb|ADE57146.1| peptide deformylase [Aminobacterium colombiense DSM 12261] Length = 164 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + +PDP+LR+ + I+ +S +M+LI+ M +M +DG+GLAA Q+GV +L + Sbjct: 1 MKKFLIRTYPDPVLRKETEAIDLFDSKLMDLIEEMKVIMLESDGVGLAAPQVGVSKKLAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + V INP ++ + V +EGCLS P +V R + + + + + Sbjct: 61 VYYDETLY-----VLINPILLKADGE-QVSEEGCLSFPGIFGNVLRPRHVVIEAYNEHGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A+ LA HE+DHL G L IDH S LK+++I K+M + + Sbjct: 115 KLTIEAEDFLARAFLHEMDHLEGRLLIDHFSPLKKNIIRKRMRQHAK 161 >gi|313894829|ref|ZP_07828389.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976510|gb|EFR41965.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] Length = 156 Score = 174 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+L++V+ PI+++ L+D+M E MYS +G+GLAA QIG R+VV Sbjct: 1 MAVLEIKKAGDPVLKQVAEPIDRLTKRHRQLLDDMAETMYSANGVGLAAPQIGKSIRMVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D + INP I T + V EGCLS+P DV+R+A +TV Y D ++ Sbjct: 61 IDVED---EHGLLELINPVI-TMREGTVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + + A+GLLA C+QHE DHL+G LFID Sbjct: 117 RRSLTAEGLLARCIQHECDHLDGRLFID 144 >gi|270284179|ref|ZP_05965690.2| peptide deformylase [Bifidobacterium gallicum DSM 20093] gi|270277263|gb|EFA23117.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] Length = 169 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + PDP+LR PI++I I +L+ ++L+ + GL+A QIGV R Sbjct: 10 AIRPIRVVPDPVLRTQCDPIKEITPAIRHLVQDLLDTVDDPGRAGLSANQIGVPLRAFSY 69 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ +NP + + EGCLS+P +R+ + R +D + Sbjct: 70 NIDGKIGY-----ILNPVLEETRGE-QYGDEGCLSVPGLWYKTRRADYARCRGIDLDGNE 123 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ DG++ +QHE DHL+G +++D L + +R K M + Q Sbjct: 124 VVLEGDGIMGRMIQHETDHLDGHVYLDRLEKEERRAALKYMREHQQ 169 >gi|119716828|ref|YP_923793.1| peptide deformylase [Nocardioides sp. JS614] gi|119537489|gb|ABL82106.1| peptide deformylase [Nocardioides sp. JS614] Length = 199 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + P++ R +P+ + ++ L +M+ MY+ DG+GLAA QIGV + V Sbjct: 22 TARSITRWGTPVMHRAQQPVTTYDDELRALAADMVATMYAADGVGLAACQIGVDLAMFVF 81 Query: 62 DLQDHAHRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D + V NP++ +EGCLS P + R +V + Sbjct: 82 DCPDDSGVHTVGVVCNPQLTLPEGRDRQLDESEEGCLSFPGAHVECARPDQASVTGTGLD 141 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + DGLLA CLQHE DH G +F D LS R + K + V+ Sbjct: 142 GEPVSFSGDGLLARCLQHETDHTRGTVFGDRLSTKLRKRLQKAHDRAVE 190 >gi|152964372|ref|YP_001360156.1| peptide deformylase [Kineococcus radiotolerans SRS30216] gi|151358889|gb|ABS01892.1| peptide deformylase [Kineococcus radiotolerans SRS30216] Length = 200 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 7/165 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 V P+ + P+L R + P+ + D++ L+ +M M + DG+GLAA QIGV R+ V+ Sbjct: 24 VVHPITRYFTPVLHRPTTPVTSFDEDLVQLVADMFASMDAADGVGLAANQIGVDARVFVV 83 Query: 62 DLQDHA----HRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D +NP + + + EGCLS+P AD+ R TV Sbjct: 84 DCPDDDTERTGENVVAHVVNPVLELPTGRRRRLDLDGEGCLSVPGEYADLARPDKATVTG 143 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D + I GLLA CLQHE DHL+G++++D L +R I Sbjct: 144 KDVHGNPVKIVGTGLLARCLQHESDHLDGVVYVDRLPAEQRAEIL 188 >gi|270308074|ref|YP_003330132.1| peptide deformylase [Dehalococcoides sp. VS] gi|270153966|gb|ACZ61804.1| peptide deformylase [Dehalococcoides sp. VS] Length = 167 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+P+LR+ ++ + I+S I LID+M+E M S DG GLAA Q+GV RLVV Sbjct: 1 MAIRRICELPEPVLRKKAKKVPSIDSSIQTLIDDMIETMSSADGAGLAAPQVGVSLRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP+I+ V EGCLSIP Y ++ R+ +T + +D + + Sbjct: 61 FREPDAKEA---TVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I G++A L+HE +HL+GIL+IDHL ++ Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESEEK 151 >gi|323701801|ref|ZP_08113472.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574] gi|323533337|gb|EGB23205.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574] Length = 151 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V D ILR+ ++P++++ +I+ L+DNM + MY+ G+GLAA QIGV R Sbjct: 1 MAVYQIVEIGDEILRQKAKPVKEVTLNIIKLLDNMADTMYANKGVGLAAPQIGVSKR--- 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + INP+I+ + + EGCLS+P +V R+ I V+ ++ + Sbjct: 58 --VVVVDVGDGLVELINPEIVEATGS-VIDTEGCLSVPGMIGEVARAERIVVQGLNRKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G LA QHE+DHL+GI+++D L++ Sbjct: 115 QVTYQAKGFLARAFQHEIDHLDGIIYVDKAKNLRK 149 >gi|238926274|ref|ZP_04658034.1| peptide deformylase [Selenomonas flueggei ATCC 43531] gi|238885954|gb|EEQ49592.1| peptide deformylase [Selenomonas flueggei ATCC 43531] Length = 160 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 4/160 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+L++ + PIE++ L+D+M E MY+ DG+GLAA Q+G R+VV Sbjct: 5 MAILDIKKAGDPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD + +NP I T + EGCLS+P DV+R+ +TV Y D ++ Sbjct: 65 IDVQD---EHGLLELVNPVI-TMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSR 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + A+GLLA C+QHE DHL G LFID RL+++ + Sbjct: 121 RRTLTAEGLLARCIQHECDHLEGRLFIDIAVRLRKEEEEE 160 >gi|226305513|ref|YP_002765473.1| peptide deformylase [Rhodococcus erythropolis PR4] gi|226184630|dbj|BAH32734.1| peptide deformylase [Rhodococcus erythropolis PR4] Length = 188 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P++ + P+L +RP+ + SD+ +L+ +M + G GLAA QIGV + + Sbjct: 11 TAQPIIRWGTPVLHAPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 70 Query: 62 DLQDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D + V NP + EGCLS+P D+ R F T R D Sbjct: 71 DCTDEVGTQRTGVVCNPVVDLPEAVDRQLVDDCEGCLSLPGAYTDLARPDFSTCRGNDQY 130 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I A G L C QHE DH+NGI+F D L KR + + Sbjct: 131 GNPIEITAGGTLGRCFQHETDHINGIVFGDRLPTRKRKQLYR 172 >gi|304437066|ref|ZP_07397029.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370017|gb|EFM23679.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 160 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+L++ + PIE++ L+D+M E MY+ DG+GLAA Q+G R+VV Sbjct: 5 MAILDIKKAGDPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD + +NP I T + EGCLS+P DV+R+ +TV Y D ++ Sbjct: 65 IDVQD---EHGLLELVNPVI-TMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSR 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + A+GLLA C+QHE DHL G LFID RL++ Sbjct: 121 RRTLTAEGLLARCIQHECDHLEGRLFIDIAVRLRK 155 >gi|148380578|ref|YP_001255119.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|148290062|emb|CAL84181.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] Length = 156 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 1 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+ + + P++ INPK +EGCLS P Y V R + + ++ + Sbjct: 61 IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 117 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 151 >gi|111019169|ref|YP_702141.1| peptide deformylase [Rhodococcus jostii RHA1] gi|110818699|gb|ABG93983.1| peptide deformylase [Rhodococcus jostii RHA1] Length = 196 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 9/173 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L + + + +++ +I +M + M + +G+GLAA Q+G+ RL V Sbjct: 1 MAILPIRIVGDPVLHEPTEAVSQSPAELAEIIADMYDTMDAANGVGLAANQVGLPLRLFV 60 Query: 61 IDLQDHAHR----KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFIT 111 D D + +NP + T D EGCLS+P + R+ + Sbjct: 61 YDCPDVDGDGKALRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGRAEWAK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V D + I G A LQHE+ HL+G L++D L K + + Sbjct: 121 VTGTDADGNAVEIEGHGFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKR 173 >gi|229489380|ref|ZP_04383243.1| polypeptide deformylase [Rhodococcus erythropolis SK121] gi|229323477|gb|EEN89235.1| polypeptide deformylase [Rhodococcus erythropolis SK121] Length = 212 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P++ + P+L +RP+ + SD+ +L+ +M + G GLAA QIGV + + Sbjct: 35 TAQPIIRWGTPVLHTPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 94 Query: 62 DLQDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D + V NP + Y EGCLS+P D+ R F T R D Sbjct: 95 DCTDEVGTQRTGVVCNPVVDLPEGVDRQLVDYCEGCLSLPGAYTDLARPDFSTCRGNDQY 154 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I A G L C QHE DH+NGI+F D L KR + + Sbjct: 155 GNPIEITAGGTLGRCFQHEADHINGIVFGDRLPTRKRKQLYR 196 >gi|255535832|ref|YP_003096203.1| peptide deformylase [Flavobacteriaceae bacterium 3519-10] gi|255342028|gb|ACU08141.1| Peptide deformylase [Flavobacteriaceae bacterium 3519-10] Length = 190 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ F D +LR+ + I K D+ LI NM + M S GIGLAA Q+G+ RL ++ Sbjct: 1 MILPIRAFGDAVLRKHCQEITKDYPDLDELIANMFDTMNSAHGIGLAAPQVGLDIRLFIV 60 Query: 62 DLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 DL A ++ V IN KI+ + + + EGCLSIPD R DVKR I Sbjct: 61 DLSPLAEDEDYADIADELKDFKKVLINAKILEETGEEWKFNEGCLSIPDIREDVKRKETI 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Y D N + A +QHE DH+ GILF DHLS Sbjct: 121 VIEYYDENFVKHTDTFSDMRARVIQHEYDHIEGILFTDHLS 161 >gi|313836783|gb|EFS74497.1| peptide deformylase [Propionibacterium acnes HL037PA2] gi|314929809|gb|EFS93640.1| peptide deformylase [Propionibacterium acnes HL044PA1] gi|314972238|gb|EFT16335.1| peptide deformylase [Propionibacterium acnes HL037PA3] Length = 209 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +P+L +RPI + + D+ LI +M M + DG+GLAA Q+GV L V Sbjct: 29 ALRRVTRWGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVY 88 Query: 62 DLQDHAHRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D + + F NP + EGCLS P + R T D Sbjct: 89 ACPDADNVVHHGAFCNPVVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPW 148 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A CLQHE DH NG++F D LS+ R + ++ + L Sbjct: 149 GNDITVTGTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQHDAVAHL 198 >gi|312796239|ref|YP_004029161.1| peptide deformylase [Burkholderia rhizoxinica HKI 454] gi|312168014|emb|CBW75017.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI 454] Length = 177 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L R+++P+++ N ++ LI +M E M + +G GLAA QIGV ++V+ Sbjct: 1 MIHEILKMGDPRLLRMAKPVDRFNTPELHQLIQDMFETMRAANGAGLAAPQIGVDLQVVI 60 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +A + V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGQNARYPDAPAVPETVLINPMITPVSLDMEEGWEGCLSVPGLRGIVSRLSMIRYEGH 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A+G A +QHE DHL G L+ ++ TK + Sbjct: 121 DQYGQPIDRIAEGFHARVVQHECDHLIGRLYPMRITDFSNFGFTKVL 167 >gi|302525482|ref|ZP_07277824.1| peptide deformylase [Streptomyces sp. AA4] gi|302434377|gb|EFL06193.1| peptide deformylase [Streptomyces sp. AA4] Length = 166 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L F DP+L+ V P+ +S I L+ ++L+ + GLAA QIGV R+ Sbjct: 1 MAMRELRYFGDPVLKSVCDPVTTFDSKIEALVKDLLDSVQPEGRAGLAAPQIGVGLRVFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ INP+I+ S++ EGCLS+P+ R+ VR +D + Sbjct: 61 YDVGGLTGY-----VINPEIVHLSEETHEIGEGCLSVPELWFPTVRAKHAVVRGVDLRNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +LA CLQHE DHL+G L++D L+ ++ ++ Sbjct: 116 PIEVEGVDVLAQCLQHETDHLDGKLYLDRLTPDRKKQALREAR 158 >gi|227496282|ref|ZP_03926578.1| peptide deformylase [Actinomyces urogenitalis DSM 15434] gi|226834207|gb|EEH66590.1| peptide deformylase [Actinomyces urogenitalis DSM 15434] Length = 163 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+LR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MAYRDIRIIGDPVLRTQCEWITDIDDSVKQLVEDLLETVDEDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +NP+I + D++ EGCLS+P KR+ + +D + Sbjct: 61 WNIDGEIGY-----ILNPRIDELNFDEYQDGDEGCLSVPGLWYPTKRAWYARATGIDLDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ++ + L+ C+QHE DHL G L++D L R R K + Sbjct: 116 KEVVVEGEELMGRCIQHECDHLEGHLYLDRLDRKNRAKAMKDLRA 160 >gi|187932490|ref|YP_001886374.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] gi|187720643|gb|ACD21864.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] Length = 149 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + ++ DPILR+ S+ +E ++ I +++++M E MY+T +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLYDDPILRKKSKEVEVVDDKIRDILNDMAETMYNTENGAGLAAPQVGMLKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + INPKII V EGCLS P+ +KR + + ++ N Sbjct: 61 VIDM-----WQGLIKLINPKIIKKEGSQEVI-EGCLSNPNVFGKLKRPYKVIIEALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + G LA C HE+DHL+GILF D ++ Sbjct: 115 EEIQLTGTGDLAKCFCHEIDHLDGILFTDLVTE 147 >gi|255306782|ref|ZP_05350953.1| peptide deformylase 1 [Clostridium difficile ATCC 43255] Length = 151 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + F D ILR+ S+ +E +++ I ++++M E MY+T G GLAA Q+GVL RLV Sbjct: 1 MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + + +NP+II + V EGCLS P+ +KR +TV+ ++ Sbjct: 61 VIDLGE-----GLIKLVNPEIIEQEGEQIVV-EGCLSFPEVWGKLKRPKKVTVQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I G +A CL HE+DHLNGI+F D + Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145 >gi|15607570|ref|NP_214943.1| peptide deformylase [Mycobacterium tuberculosis H37Rv] gi|15839816|ref|NP_334853.1| peptide deformylase [Mycobacterium tuberculosis CDC1551] gi|121636343|ref|YP_976566.1| peptide deformylase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660194|ref|YP_001281717.1| peptide deformylase [Mycobacterium tuberculosis H37Ra] gi|148821625|ref|YP_001286379.1| peptide deformylase [Mycobacterium tuberculosis F11] gi|167970754|ref|ZP_02553031.1| peptide deformylase [Mycobacterium tuberculosis H37Ra] gi|215402181|ref|ZP_03414362.1| peptide deformylase [Mycobacterium tuberculosis 02_1987] gi|215409945|ref|ZP_03418753.1| peptide deformylase [Mycobacterium tuberculosis 94_M4241A] gi|215425650|ref|ZP_03423569.1| peptide deformylase [Mycobacterium tuberculosis T92] gi|215429251|ref|ZP_03427170.1| peptide deformylase [Mycobacterium tuberculosis EAS054] gi|215444525|ref|ZP_03431277.1| peptide deformylase [Mycobacterium tuberculosis T85] gi|218752062|ref|ZP_03530858.1| peptide deformylase [Mycobacterium tuberculosis GM 1503] gi|219556250|ref|ZP_03535326.1| peptide deformylase [Mycobacterium tuberculosis T17] gi|224988815|ref|YP_002643502.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253797353|ref|YP_003030354.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435] gi|254230779|ref|ZP_04924106.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis C] gi|254363393|ref|ZP_04979439.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis str. Haarlem] gi|254549376|ref|ZP_05139823.1| peptide deformylase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185296|ref|ZP_05762770.1| peptide deformylase [Mycobacterium tuberculosis CPHL_A] gi|260199427|ref|ZP_05766918.1| peptide deformylase [Mycobacterium tuberculosis T46] gi|260203579|ref|ZP_05771070.1| peptide deformylase [Mycobacterium tuberculosis K85] gi|289441809|ref|ZP_06431553.1| polypeptide deformylase [Mycobacterium tuberculosis T46] gi|289445969|ref|ZP_06435713.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A] gi|289552678|ref|ZP_06441888.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605] gi|289568345|ref|ZP_06448572.1| polypeptide deformylase def [Mycobacterium tuberculosis T17] gi|289573014|ref|ZP_06453241.1| polypeptide deformylase def [Mycobacterium tuberculosis K85] gi|289744125|ref|ZP_06503503.1| peptide deformylase [Mycobacterium tuberculosis 02_1987] gi|289748913|ref|ZP_06508291.1| polypeptide deformylase def [Mycobacterium tuberculosis T92] gi|289752458|ref|ZP_06511836.1| peptide deformylase [Mycobacterium tuberculosis EAS054] gi|289756502|ref|ZP_06515880.1| polypeptide deformylase def [Mycobacterium tuberculosis T85] gi|289760545|ref|ZP_06519923.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis GM 1503] gi|294995934|ref|ZP_06801625.1| peptide deformylase [Mycobacterium tuberculosis 210] gi|297632913|ref|ZP_06950693.1| peptide deformylase [Mycobacterium tuberculosis KZN 4207] gi|297729888|ref|ZP_06959006.1| peptide deformylase [Mycobacterium tuberculosis KZN R506] gi|298523906|ref|ZP_07011315.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis 94_M4241A] gi|306774525|ref|ZP_07412862.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001] gi|306779274|ref|ZP_07417611.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002] gi|306783063|ref|ZP_07421385.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003] gi|306787430|ref|ZP_07425752.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004] gi|306791982|ref|ZP_07430284.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005] gi|306796169|ref|ZP_07434471.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006] gi|306802026|ref|ZP_07438694.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008] gi|306806238|ref|ZP_07442906.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007] gi|306966434|ref|ZP_07479095.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009] gi|306970629|ref|ZP_07483290.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010] gi|307078354|ref|ZP_07487524.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011] gi|307082913|ref|ZP_07492026.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012] gi|313657217|ref|ZP_07814097.1| peptide deformylase [Mycobacterium tuberculosis KZN V2475] gi|6225255|sp|P96275|DEF_MYCTU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512922|sp|A1KFQ1|DEF_MYCBP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158513357|sp|A5TZF5|DEF_MYCTA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767595|sp|C1AKA5|DEF_MYCBT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|221046693|pdb|3E3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Peptide Deformylase In Complex With Inhibitor gi|1817695|emb|CAB06569.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE) [Mycobacterium tuberculosis H37Rv] gi|13879947|gb|AAK44667.1| peptide deformylase [Mycobacterium tuberculosis CDC1551] gi|121491990|emb|CAL70453.1| Probable polypeptide deformylase def [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599838|gb|EAY58848.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis C] gi|134148907|gb|EBA40952.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis str. Haarlem] gi|148504346|gb|ABQ72155.1| peptide deformylase [Mycobacterium tuberculosis H37Ra] gi|148720152|gb|ABR04777.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis F11] gi|224771928|dbj|BAH24734.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253318856|gb|ACT23459.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435] gi|289414728|gb|EFD11968.1| polypeptide deformylase [Mycobacterium tuberculosis T46] gi|289418927|gb|EFD16128.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A] gi|289437310|gb|EFD19803.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605] gi|289537445|gb|EFD42023.1| polypeptide deformylase def [Mycobacterium tuberculosis K85] gi|289542098|gb|EFD45747.1| polypeptide deformylase def [Mycobacterium tuberculosis T17] gi|289684653|gb|EFD52141.1| peptide deformylase [Mycobacterium tuberculosis 02_1987] gi|289689500|gb|EFD56929.1| polypeptide deformylase def [Mycobacterium tuberculosis T92] gi|289693045|gb|EFD60474.1| peptide deformylase [Mycobacterium tuberculosis EAS054] gi|289708051|gb|EFD72067.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis GM 1503] gi|289712066|gb|EFD76078.1| polypeptide deformylase def [Mycobacterium tuberculosis T85] gi|298493700|gb|EFI28994.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis 94_M4241A] gi|308216874|gb|EFO76273.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001] gi|308327718|gb|EFP16569.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002] gi|308332080|gb|EFP20931.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003] gi|308335895|gb|EFP24746.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004] gi|308339472|gb|EFP28323.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005] gi|308343337|gb|EFP32188.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006] gi|308347247|gb|EFP36098.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007] gi|308351177|gb|EFP40028.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008] gi|308355830|gb|EFP44681.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009] gi|308359750|gb|EFP48601.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010] gi|308363691|gb|EFP52542.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011] gi|308367344|gb|EFP56195.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012] gi|323721101|gb|EGB30163.1| polypeptide deformylase def [Mycobacterium tuberculosis CDC1551A] gi|326902255|gb|EGE49188.1| polypeptide deformylase def [Mycobacterium tuberculosis W-148] gi|328457139|gb|AEB02562.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 4207] Length = 197 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 72/162 (44%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ D+ LI M + M + +G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60 Query: 56 YRLVVIDL--QDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 RL V D + V INP +I D EGCLS+P R+ Sbjct: 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + I GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRL 162 >gi|108797549|ref|YP_637746.1| peptide deformylase [Mycobacterium sp. MCS] gi|119866635|ref|YP_936587.1| peptide deformylase [Mycobacterium sp. KMS] gi|126433171|ref|YP_001068862.1| peptide deformylase [Mycobacterium sp. JLS] gi|122977465|sp|Q1BEJ4|DEF_MYCSS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158513055|sp|A1UAD9|DEF_MYCSK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158513446|sp|A3PTZ4|DEF_MYCSJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|108767968|gb|ABG06690.1| peptide deformylase [Mycobacterium sp. MCS] gi|119692724|gb|ABL89797.1| peptide deformylase [Mycobacterium sp. KMS] gi|126232971|gb|ABN96371.1| peptide deformylase [Mycobacterium sp. JLS] Length = 197 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 12/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+LR + PI + ++ +LI ++ E M + +G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLRTETTPIPVGDDGSLPAEVADLIRDLYETMDAANGVGLAANQIGVS 60 Query: 56 YRLVVIDLQD--HAHRKNPMVFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D + V INP I D +EGCLS+P + R+ Sbjct: 61 QRVFVYDCPDSRGRAGRRRGVVINPVLETSDIPETMPDPDDDEEGCLSVPGEQFPTGRAD 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + V +D + + GL A LQHE HL+G L++D L + + Sbjct: 121 WARVTGLDADGSPITVEGTGLFARMLQHETGHLDGFLYLDRLIGRHARAAKRAVK 175 >gi|58038609|ref|YP_190573.1| polypeptide deformylase [Gluconobacter oxydans 621H] gi|58001023|gb|AAW59917.1| Polypeptide deformylase [Gluconobacter oxydans 621H] Length = 170 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + +P+L +V++ + +I +LI +MLE M G GLAA Q+ R+ Sbjct: 1 MPLLKIARMGNPVLHQVAQAVSDPKAPEIQSLIADMLETMADARGAGLAAPQVHQPLRIF 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 V + + P V INP+I D+ V EGCLSIP RADV R A + Sbjct: 61 VYHVPTNRVANPEEALLPRVLINPEITPVGDEMMVCSEGCLSIPGLRADVPRHAKVRYSG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D N A G A LQHE DHLNGIL+ ++ R +++ Sbjct: 121 LDENGAVLEGEATGFHANVLQHENDHLNGILYPQRITDFARFGYVEEI 168 >gi|296167940|ref|ZP_06850084.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896930|gb|EFG76556.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 197 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++P+ D+ LI +M + M + G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTQPVPVGADGSLPADLAALIADMYDTMDAAHGVGLAANQIGVG 60 Query: 56 YRLVVIDL--QDHAHRKNPMVFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D + V +NP I D EGCLS+P R+ Sbjct: 61 LRVFVYDCADDRGRTDRRRGVVVNPVLETSQIPETMPDPDNDDEGCLSVPGESFPTGRAT 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + + I GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGKPVEIEGSGLFARMLQHETGHLDGFLYLDRL 162 >gi|227505915|ref|ZP_03935964.1| peptide deformylase [Corynebacterium striatum ATCC 6940] gi|227197437|gb|EEI77485.1| peptide deformylase [Corynebacterium striatum ATCC 6940] Length = 206 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 23/186 (12%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P+VI DP+L + P+ + + ++ LI +M E M G+GLAA Q+G+ RL Sbjct: 1 MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMYETMDVAHGVGLAANQVGINKRL 60 Query: 59 VVIDLQDHAHRKNPMV-----------FINPKIITFS------DDFSVYQEGCLSIPDYR 101 V D + + INP + T D EGCLS+P Sbjct: 61 FVYHCPDTDGPEGTELPADKAGMRKGCVINPVLETSEIPEGMPADDGSEDEGCLSVPGEG 120 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 R+ + V D + I G A LQHE HL+G ++ D L+ ++ Sbjct: 121 FPTGRADWARVTGKDEHGNDISIEGYGFFARMLQHETGHLDGFVYTDVLTG----RFKRQ 176 Query: 162 MSKLVQ 167 K+++ Sbjct: 177 AKKIIK 182 >gi|262183416|ref|ZP_06042837.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975] Length = 204 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 17/181 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P+VI DP+L + P+ + + ++ LI +M E M + G+GLAA QIGV RL Sbjct: 1 MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 60 Query: 59 VVIDLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 V D NP++ + T D EGCLS+P Sbjct: 61 FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 R+ + V + + I G A LQHE HL+G ++ D L+ + K + Sbjct: 121 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKRQAKKAIK 180 Query: 164 K 164 + Sbjct: 181 R 181 >gi|116670231|ref|YP_831164.1| peptide deformylase [Arthrobacter sp. FB24] gi|116610340|gb|ABK03064.1| peptide deformylase [Arthrobacter sp. FB24] Length = 197 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 7/164 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR V+ P+ + ++ L+ +M E M DG GLAA Q+GV R+ Sbjct: 3 MAILNIRIIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFT 62 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNA 119 + INP + S+DF + EGCLSIP V+R V +D + Sbjct: 63 YRIGGVEG-----HIINPVL-ENSEDFQPDEVEGCLSIPGLGFPVRRRRATRVTGVDLHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +G+LA C QHE DHL+GILF D L R + + Sbjct: 117 HPVTVDGEGMLARCFQHETDHLDGILFTDRLEGEDRKAALRSIR 160 >gi|170723021|ref|YP_001750709.1| peptide deformylase [Pseudomonas putida W619] gi|169761024|gb|ACA74340.1| peptide deformylase [Pseudomonas putida W619] Length = 178 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L RV+ P+ + ++++ LID+M E M G+GLAA Q+G+ +L Sbjct: 1 MIRDILKMGDERLLRVAAPVPEHLIGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I S + EGCLS+P R V R I+ Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPLSTEIEEGWEGCLSVPGLRGVVPRYKHISYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D ADG A +QHE DHL G L+ + + T+ + Sbjct: 121 GIDPQGNPVNRVADGFHARVVQHECDHLIGRLYPSRIQDFAKFGYTEVL 169 >gi|255325809|ref|ZP_05366901.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] gi|311740109|ref|ZP_07713942.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] gi|255297021|gb|EET76346.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] gi|311304805|gb|EFQ80875.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] Length = 207 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 20/185 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P+VI + +L ++P+E+ ++ LI +M E M + +G+GLAA Q+G+ R Sbjct: 1 MTIRPIVIHGETVLHEPTQPVEESEISTPEMQQLIADMYETMDAANGVGLAANQVGIGKR 60 Query: 58 LVVIDLQDHAHRK-----------------NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 L V D NP++ + T D EGCLS+P Sbjct: 61 LFVYHCPDTDGPNGTELPSEEAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R+ + V D N + G A CLQHE HL+G L+ D L + K Sbjct: 121 GFPTGRADWARVTGKDENGNDISVEGYGFFARCLQHETGHLDGFLYTDTLIGRYKRQAKK 180 Query: 161 KMSKL 165 + + Sbjct: 181 AIKRH 185 >gi|254457336|ref|ZP_05070764.1| peptide deformylase [Campylobacterales bacterium GD 1] gi|207086128|gb|EDZ63412.1| peptide deformylase [Campylobacterales bacterium GD 1] Length = 174 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 105/167 (62%), Gaps = 4/167 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PD IL+++S +EK + ++ +L+D M +M T+GIGLAA+Q+ +++++++ + Sbjct: 5 IVEYPDKILKQISEKVEKFDKELHDLLDAMYPIMVKTNGIGLAAIQVARPKQVLILNIPE 64 Query: 66 HAHR---KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +N + +NP I+ + VYQEGCLS+P + D+ R ITV Y D +A + Sbjct: 65 EDGEQPIENLIEMVNPIIVKKDGEI-VYQEGCLSVPSFYEDIIRFENITVNYQDRDANTK 123 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLL+ +QHE+DHL GILFID LS +R K+ ++ + + Sbjct: 124 TLEANGLLSVAIQHEIDHLKGILFIDKLSYARRKKFEKEYKRMQKEK 170 >gi|323356569|ref|YP_004222965.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] gi|323272940|dbj|BAJ73085.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] Length = 163 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR S PIE I+ I L+ ++L+ + G+AA QIGV R Sbjct: 1 MTVRPIRLFGDPVLRAPSAPIETIDDGIHALVRDLLDTVEPPGRAGVAAPQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP ++ + + EGCLS+P + R + V +D + Sbjct: 61 YNIDGDIGY-----VLNPVLVETRGEPQLVGEGCLSVPGLWHEATRYPWAKVVGIDLDGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ +GLLA LQHE DHL+G+L++ L R +++ + Sbjct: 116 EVVLEGEGLLAQALQHETDHLDGMLYLSRLPADTRREAMRQIRE 159 >gi|302544000|ref|ZP_07296342.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302461618|gb|EFL24711.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 205 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 4/166 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + + +L R + + ++ LID+M MY DG GLAA Q+GV RL V Sbjct: 17 VRRITVVGEEVLSRPCQEVTTFGTPELAALIDDMFLTMYVADGAGLAANQVGVDLRLFVY 76 Query: 62 DLQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + EGCLS+P V R+ VR D + Sbjct: 77 DCPDETGARHVGHILNPVLDLPDPGDRRLVDDIEGCLSVPGAAMAVPRTDRAVVRGFDKD 136 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +I G A CLQHE DHL G L++D LS+ R ++M + Sbjct: 137 GNPLVIEGQGYFARCLQHETDHLMGHLYLDRLSQRDRKDALRQMEE 182 >gi|294500984|ref|YP_003564684.1| peptide deformylase [Bacillus megaterium QM B1551] gi|294350921|gb|ADE71250.1| peptide deformylase [Bacillus megaterium QM B1551] Length = 157 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+ +L + ++ ++ + L++ M ++M DG+GLAA Q+GVL ++ V Sbjct: 1 MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + INP II + + EGCLS P DV R+ ++ V + + Sbjct: 61 VDVDD---RHGKIELINPVIIEQRGE-QIGPEGCLSFPGLFGDVARADYVKVHAQNRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A G LA +QHE+DHL+G+LF + +++ Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148 >gi|302878431|ref|YP_003846995.1| peptide deformylase [Gallionella capsiferriformans ES-2] gi|302581220|gb|ADL55231.1| peptide deformylase [Gallionella capsiferriformans ES-2] Length = 175 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++ D L V++P+ S + +++++M + M++ +G GLAA QIGV R+V+ Sbjct: 1 MAIKPVLRMGDARLLEVAKPVTDF-SALQDVLNDMQDTMHALNGAGLAAPQIGVGLRVVI 59 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +++++ + V INP + D EGCLS+P R V R I + + Sbjct: 60 FGVEENSRYPDAESVPYTVLINPVVTPIDDLMEDDWEGCLSVPGLRGRVARYHAIRYQGV 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D G A +QHE DHL+G+L+ ++ L+ Sbjct: 120 DAKGAPIDRSVSGFHARVVQHECDHLDGVLYPMRMTDLR 158 >gi|239917470|ref|YP_002957028.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|281414039|ref|ZP_06245781.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|239838677|gb|ACS30474.1| peptide deformylase [Micrococcus luteus NCTC 2665] Length = 213 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 7/167 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P+ ++ +P+L R + +E I+ +I LI++M + G+GLAA Q+GV R+ Sbjct: 1 MASIRPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAASQVGVGLRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDD------FSVYQEGCLSIPDYRADVKRSAFITVR 113 D N INP + + EGCLS+P ++R + + Sbjct: 61 TWTFPDSGDAPNVGHVINPVLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + A+G A +QHE DHLNG L+++ L + + Sbjct: 121 GQRVDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEGKWQRRWKR 167 >gi|313681059|ref|YP_004058798.1| peptide deformylase [Oceanithermus profundus DSM 14977] gi|313153774|gb|ADR37625.1| peptide deformylase [Oceanithermus profundus DSM 14977] Length = 199 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 19/186 (10%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P+ ++ DP+LR+ +RP++ SD+ L +NM+E M+ G+GLAA Q+G+ RL Sbjct: 1 MAEVLPIRLYGDPVLRKKARPVQDF-SDLEELAENMVETMFEYGGVGLAAPQVGLSRRLF 59 Query: 60 VIDL--------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADV 104 V + + +N V +NP+I T + V EGCLSIP Y DV Sbjct: 60 VAAEYALEEEEAEADEEERPKSALRNLYVMVNPRI-THREGTQVGTEGCLSIPGVYSDDV 118 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS- 163 R I V Y D + + A+G LA +QHELDHL G+LF+D + R ++ Sbjct: 119 PRDLQIRVEYQDVTGAPRTLEAEGYLARVIQHELDHLEGVLFLDRIPAELRRAFLEEHRA 178 Query: 164 KLVQLR 169 +L +++ Sbjct: 179 ELAEMQ 184 >gi|148240675|ref|YP_001226062.1| peptide deformylase [Synechococcus sp. WH 7803] gi|147849214|emb|CAK24765.1| Peptide deformylase [Synechococcus sp. WH 7803] Length = 177 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 8/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ P LR+ +R IE + LID++LE + G GLAA QI +R Sbjct: 1 MTIRAVLRLGHPALRQRARDIEDEVFGTQQLQTLIDDLLETKAARSGAGLAAPQIDEPWR 60 Query: 58 LVVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +VV+ + A V INP+I S+ S EGCLS+P R +V+R I + Sbjct: 61 VVVVGMGANPRYPEAPPVPERVLINPEITPLSEATSAGWEGCLSVPGLRGEVERWQRIHL 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + D N +G A +QHE DHL+G+LF D L ++ Sbjct: 121 SWRDPNGGWHHEELEGFHARVVQHECDHLDGVLFPDRLRDPTAFGFEAELQ 171 >gi|31791607|ref|NP_854100.1| peptide deformylase [Mycobacterium bovis AF2122/97] gi|39930833|sp|Q7U206|DEF_MYCBO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|31617193|emb|CAD93300.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE) [Mycobacterium bovis AF2122/97] Length = 197 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 72/162 (44%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ D+ LI M + M + +G+GLAA QIG Sbjct: 1 MTVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60 Query: 56 YRLVVIDL--QDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 RL V D + V INP +I D EGCLS+P R+ Sbjct: 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + I GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRL 162 >gi|255525653|ref|ZP_05392586.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296185413|ref|ZP_06853823.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255510639|gb|EET86946.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296050247|gb|EFG89671.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 151 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 94/154 (61%), Gaps = 6/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR +E I+ I+ L+D+M E MY DG+GLA Q+G+L R+VV Sbjct: 1 MALRNIRKYGDDLLRKKSRKVENIDDRIVTLLDDMAETMYDADGVGLAGPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II+ + + +EGCLS+P + V+R + V+ ++ + Sbjct: 61 IDVGEGILK-----LINPEIISTEGSY-IDEEGCLSVPGEQGKVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I+ + LLA L HE+DHL GILF+D + + + Sbjct: 115 EIIVEGEELLARALCHEIDHLEGILFVDKILKTE 148 >gi|126699364|ref|YP_001088261.1| peptide deformylase 1 [Clostridium difficile 630] gi|254975393|ref|ZP_05271865.1| peptide deformylase 1 [Clostridium difficile QCD-66c26] gi|255092782|ref|ZP_05322260.1| peptide deformylase 1 [Clostridium difficile CIP 107932] gi|255100892|ref|ZP_05329869.1| peptide deformylase 1 [Clostridium difficile QCD-63q42] gi|255314522|ref|ZP_05356105.1| peptide deformylase 1 [Clostridium difficile QCD-76w55] gi|255517197|ref|ZP_05384873.1| peptide deformylase 1 [Clostridium difficile QCD-97b34] gi|255650303|ref|ZP_05397205.1| peptide deformylase 1 [Clostridium difficile QCD-37x79] gi|255655776|ref|ZP_05401185.1| peptide deformylase 1 [Clostridium difficile QCD-23m63] gi|260683417|ref|YP_003214702.1| peptide deformylase 1 [Clostridium difficile CD196] gi|260687013|ref|YP_003218146.1| peptide deformylase 1 [Clostridium difficile R20291] gi|296450989|ref|ZP_06892736.1| peptide deformylase 1 [Clostridium difficile NAP08] gi|296879045|ref|ZP_06903041.1| peptide deformylase 1 [Clostridium difficile NAP07] gi|306520272|ref|ZP_07406619.1| peptide deformylase [Clostridium difficile QCD-32g58] gi|115250801|emb|CAJ68625.1| Peptide deformylase 1 (PDF 1) (Polypeptide deformylase 1) [Clostridium difficile] gi|260209580|emb|CBA63212.1| peptide deformylase 1 [Clostridium difficile CD196] gi|260213029|emb|CBE04369.1| peptide deformylase 1 [Clostridium difficile R20291] gi|296260207|gb|EFH07055.1| peptide deformylase 1 [Clostridium difficile NAP08] gi|296429918|gb|EFH15769.1| peptide deformylase 1 [Clostridium difficile NAP07] Length = 151 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + F D ILR+ S+ +E +++ I ++++M E MY+T G GLAA Q+GVL RLV Sbjct: 1 MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + + +NP+II + V EGCLS P+ +KR +TV+ ++ Sbjct: 61 VIDLGE-----GLIKLVNPEIIKQEGEQIVV-EGCLSFPEVWGKLKRPKKVTVQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I G +A CL HE+DHLNGI+F D + Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145 >gi|283457827|ref|YP_003362425.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] gi|283133840|dbj|BAI64605.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] Length = 214 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR V PI + D+ LID+MLE MY G+GLA Q+G+ ++ Sbjct: 17 MTILSIRTVGDPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFT 76 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP + +D + GCLS+P ++ R + V +D + + Sbjct: 77 FGGIDDRE----GYIINPVLEVGEEDQEGGE-GCLSVPGQKSATPRKNWARVTGVDRHGE 131 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ +GL A LQHE DHL+G LFID L R + + + Sbjct: 132 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRQRVMRALRA 175 >gi|227834098|ref|YP_002835805.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] gi|227455114|gb|ACP33867.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] Length = 210 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 17/181 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P+VI DP+L + P+ + + ++ LI +M E M + G+GLAA QIGV RL Sbjct: 7 MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 66 Query: 59 VVIDLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 V D NP++ + T D EGCLS+P Sbjct: 67 FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 126 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 R+ + V + + I G A LQHE HL+G ++ D L+ + K + Sbjct: 127 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKRQAKKAIK 186 Query: 164 K 164 + Sbjct: 187 R 187 >gi|95931365|ref|ZP_01314077.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] gi|95132581|gb|EAT14268.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] Length = 166 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 99/166 (59%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + ++++PDP L+ V RP E ++D L+ ++++ MY + +G+AA QIG+ R+ Sbjct: 1 MAVREVLVYPDPRLKEVCRPAEVGHADTAALVQDLIDTMYDSGHSVGIAAPQIGICQRVA 60 Query: 60 VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ H + +NP II + V +EGC+S+PDY +V+R+ I V++ Sbjct: 61 VVDVSNSKLGKKHNHGLVTMVNPTIIESTGSK-VMREGCMSVPDYTGNVERAREIVVQFY 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 D Q Q++ G A +QHELDHL+G+LF+D +S K D+ +K Sbjct: 120 DQEGQDQVMRCKGFEAVAIQHELDHLDGLLFLDRVSNPKADIFKRK 165 >gi|189423599|ref|YP_001950776.1| peptide deformylase [Geobacter lovleyi SZ] gi|189419858|gb|ACD94256.1| peptide deformylase [Geobacter lovleyi SZ] Length = 169 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 106/167 (63%), Gaps = 7/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M +P++ +P P+L++++ + ++ I L+ ++++ M + G +G+AA QIGV R+ Sbjct: 1 MAVQPILKYPHPLLKKMAHRVAALDEPIHTLVQDLIDTMQAGPGSVGVAAPQIGVGLRVC 60 Query: 60 VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ + H K+ + +NP+II+ S +V +EGC+S+PDY DV+R+ ITVR++ Sbjct: 61 VVDVSNSRHGKDNNHGLLCMVNPEIISRSG-LAVMREGCMSVPDYTGDVERATEITVRFL 119 Query: 116 D-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 D + Q + + A G A +QHE+DHL+G+LF+D + + + +K Sbjct: 120 DSRSGQQREVAASGFEAVAIQHEMDHLDGLLFLDRIISVSTGLFRRK 166 >gi|295111635|emb|CBL28385.1| peptide deformylase [Synergistetes bacterium SGP1] Length = 182 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + +PDP+L++V+ P+ + ++ + + M VM +DG+GLAA Q+GVL ++ V+D + Sbjct: 25 EVRRYPDPVLKKVAEPVTVFDDELADFVGKMRTVMRVSDGVGLAAPQVGVLRQIAVVDYK 84 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + A+ INP+++ +EGCLS P A V+R ++ V D + + Sbjct: 85 EEAYD-----LINPRVLEQ-GGEQEGEEGCLSFPGIYAMVRRPEWVRVEAQDVRGEVHVH 138 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A G LA HE+DHLNG LFID+LS LKR I +KM K Sbjct: 139 EASGFLARAFLHEMDHLNGKLFIDYLSPLKRGAIRRKMMK 178 >gi|306820768|ref|ZP_07454393.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551158|gb|EFM39124.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 166 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR--- 57 M + L I DP+LR+VSR + +++ I LI++M++ M DG+GLAA Q+GVL R Sbjct: 1 MGIRNLRIDGDPLLRKVSREVTELSDKIRLLIEDMMDTMTENDGVGLAAPQVGVLKRVIV 60 Query: 58 -----LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + L+D P+ INP II + V QEGCLS+P+ DVKR + I V Sbjct: 61 VDVSDVDPEVLKDENAPDEPIALINPVIIEKDGE-EVGQEGCLSVPNLTGDVKRPSRIVV 119 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + + + + A A L HE+DHLNG+L+ID L+ Sbjct: 120 KAKNEKFEDVVFEAKHFFARVLCHEIDHLNGVLYIDKAENLRER 163 >gi|261856616|ref|YP_003263899.1| peptide deformylase [Halothiobacillus neapolitanus c2] gi|261837085|gb|ACX96852.1| peptide deformylase [Halothiobacillus neapolitanus c2] Length = 166 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M ++ +PD L+ P++ N ++ + ID+++E G +G+AA Q+GVL R+ Sbjct: 1 MASLEILTYPDERLKTGCEPVDTFNPEMQSFIDHLIETCSGGPGAVGIAAPQVGVLQRIC 60 Query: 60 VIDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++D + +V INP+I + D F+V +EGCLS+PDY V R+ I ++ D Sbjct: 61 IVDATRARRPVDNHGHLVLINPEITAW-DGFAVGREGCLSVPDYTGKVIRAEKIELKAQD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRD 156 N + G A QHE+DHL+GILF+D L + LKR Sbjct: 120 RNGKPCTFTMSGFEARIAQHEVDHLDGILFLDRLVSRHADLKRR 163 >gi|283783275|ref|YP_003374029.1| peptide deformylase [Gardnerella vaginalis 409-05] gi|297243498|ref|ZP_06927430.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] gi|283441016|gb|ADB13482.1| peptide deformylase [Gardnerella vaginalis 409-05] gi|296888543|gb|EFH27283.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] Length = 162 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR I +I + +L+D++LE + GL+A QIGV +R Sbjct: 1 MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP I + EGCLS+P +R+ + R +D + + Sbjct: 61 YNINGRIGY-----ILNPVIEELKGE-QYDDEGCLSVPGLWYKTRRANYARARGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ +GL+A +QHE DHL+G +++D L + R +++ ++ Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLDRLEKDVRRQALRELRNNMR 161 >gi|220927497|ref|YP_002504406.1| peptide deformylase [Clostridium cellulolyticum H10] gi|219997825|gb|ACL74426.1| peptide deformylase [Clostridium cellulolyticum H10] Length = 151 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + D +LR+ RP++++N + L+ +M + MY+T +G GLAA Q+G+L R+V Sbjct: 1 MALRNIRTLDDEVLRKKCRPVDEVNDKVRELLKDMADTMYNTGNGAGLAAPQVGILKRIV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D + +NP+I+ V EGCLSI V R + V+ ++ Sbjct: 61 VIDMGD-----GLINLVNPEIVEQKGSQEVI-EGCLSILGKWGKVIRPTEVKVKALNEKG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + II +A CL HE+DHL+GILF D ++ Sbjct: 115 EEVIITGKKDMAKCLCHEIDHLDGILFTDKVTE 147 >gi|262091714|gb|ACY25304.1| peptide deformylase [uncultured actinobacterium] Length = 175 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 6/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + ++ DP+L+ ++ I I+ +++L +NML +MY G+GLA QIGV ++ V D+ D Sbjct: 7 IRVYGDPVLKTLAASITNIDGKLVSLAENMLHIMYEAPGLGLAGPQIGVQKQIFVYDVDD 66 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +P V +NP I+ S + VY EGCLSIP ++ R + VR + + Sbjct: 67 -----DPQVILNPTIVESSGE-WVYDEGCLSIPGLFVEMLRPKEVLVRGLTLEGDEIEVE 120 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 AD LLA QHE+DHL G+L D + +R + + K + Sbjct: 121 ADELLARLFQHEIDHLQGVLMFDRMLPDQRKIALNEYQKHEK 162 >gi|203283991|ref|YP_002221731.1| polypeptide deformylase [Borrelia duttonii Ly] gi|203287534|ref|YP_002222549.1| polypeptide deformylase [Borrelia recurrentis A1] gi|201083434|gb|ACH93025.1| polypeptide deformylase [Borrelia duttonii Ly] gi|201084754|gb|ACH94328.1| polypeptide deformylase [Borrelia recurrentis A1] Length = 165 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 3/164 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PD +LR ++ +E I+ ++ ++I M+ +M + G+GLAA Q+G+ + V+ Sbjct: 2 EIVFYPDDLLRVQTKDVENIDDELRSIIFEMIGLMDKSKGVGLAAPQVGLDLSIFVV--- 58 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP I + S + SVY+EGCLSIP D+ R I + D N + I Sbjct: 59 RKNMMSKPLVFINPVITSKSVELSVYKEGCLSIPGVYYDLSRPKSIVIEAYDENGKFFKI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +LA +QHE+DHL G+LFID+ R+ + K K +L Sbjct: 119 EDLDILARIIQHEMDHLKGVLFIDYYEDKLRNKLLKSYLKERRL 162 >gi|307329984|ref|ZP_07609136.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306884360|gb|EFN15394.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 212 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 4/169 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + ILRR R + + ++ LID+M MY +G GLAA Q+ V RL V D Sbjct: 26 RRITEVGEEILRRSCREVTEFGTPELSALIDDMFLTMYIAEGAGLAANQVDVELRLFVYD 85 Query: 63 LQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D ++ INP + EGCLS+P R DV R+ VR +D + Sbjct: 86 CPDDNGVRHVGHIINPVLDQPDPAERLLIEDAEGCLSVPGARMDVPRTDRTVVRGVDKDG 145 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +I G A CLQHE DHL+G L+ID LS+ R ++M+ L + Sbjct: 146 NPLVIEGTGYFARCLQHEADHLSGHLYIDRLSKRDRKDALRQMTDLHEQ 194 >gi|296331148|ref|ZP_06873622.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674303|ref|YP_003865975.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151792|gb|EFG92667.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412547|gb|ADM37666.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 160 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R+ V Sbjct: 1 MAVKKVVTHPAEVLETPTESVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D++ R + +NP+I+ S + EGCLS P DV R+ ++ VR + + Sbjct: 61 VDIGDNSGRID---LVNPEILEKSGE-QTGIEGCLSFPGVYGDVTRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|328951365|ref|YP_004368700.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] gi|328451689|gb|AEB12590.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] Length = 197 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 15/181 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+ ++ DPILRR + P+E + I L +N+ E M+ G+GLAA Q+G+ RL V Sbjct: 6 TIYPIRLYGDPILRRRALPVEAFD-GIPELAENLFETMFEAGGVGLAAPQVGISRRLFVA 64 Query: 62 DLQDHA-----------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAF 109 K V +NP I T+ + V EGCLS+P Y +V R Sbjct: 65 AEYLDEEEEAEDTPLKSRVKQLYVMVNPVI-TYREGHQVGTEGCLSLPGLYSDEVPRDLR 123 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS-KLVQL 168 + V+Y D + +++ A+G LA +QHELDHL G LFID L R + +L ++ Sbjct: 124 VRVQYQDEYGEPKVLEAEGYLARVIQHELDHLEGKLFIDRLPPEARRAFINEHRAELAEM 183 Query: 169 R 169 + Sbjct: 184 Q 184 >gi|302387077|ref|YP_003822899.1| peptide deformylase [Clostridium saccharolyticum WM1] gi|302197705|gb|ADL05276.1| peptide deformylase [Clostridium saccharolyticum WM1] Length = 163 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 8/154 (5%) Query: 1 MVKKPLV--IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + + + ILR+ ++ +E I++ ++ L+++M + MY +G+GLAA Q+GVL RL Sbjct: 1 MAYRNIRNNKENNTILRKQAKKVENIDNKVLTLLEDMADTMYQEEGVGLAAPQVGVLKRL 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 VVID+ + INP+I+ S EGCLS+P +V R + ++ + Sbjct: 61 VVIDIG-----AGLIKLINPEIMEQSGQQQ-GMEGCLSVPGISGEVVRPQKVRIKAQNET 114 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA + HE+DHLNG+LFID + Sbjct: 115 GAYFELEGTDLLARAICHEIDHLNGVLFIDKIVP 148 >gi|300784243|ref|YP_003764534.1| polypeptide deformylase [Amycolatopsis mediterranei U32] gi|299793757|gb|ADJ44132.1| polypeptide deformylase [Amycolatopsis mediterranei U32] Length = 166 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L F DPIL+ V P+ + + L+ ++++ + GLAA QIGV R+ Sbjct: 1 MAMRELRYFGDPILKSVCDPVTVFDEKLEALVRDLVDSVKPAGRAGLAAPQIGVGLRVFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ +NP+I+ S++ EGCLS+P+ +R+ VR +D + + Sbjct: 61 YDVAGLTGY-----VVNPEIVELSEETHEINEGCLSVPELWFPTRRAMHAKVRGVDVHNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + +LA CLQHE DHL+G+L++D L+ ++ ++ Sbjct: 116 PIEVEGEDVLAQCLQHETDHLDGVLYLDRLTAERKKSALREAR 158 >gi|257877734|ref|ZP_05657387.1| formylmethionine deformylase [Enterococcus casseliflavus EC20] gi|257811900|gb|EEV40720.1| formylmethionine deformylase [Enterococcus casseliflavus EC20] Length = 162 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 103/167 (61%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LRR ++P++ I +++ L+D++ E M + DGIG+AA Q+G ++ ++ Sbjct: 1 MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++++ INP+II S + S+ EGCLSIP VKR+ ITVRY D + Sbjct: 61 EVEEDDR----FEMINPEIIASSGE-SLDVEGCLSIPHTFGTVKRADEITVRYFDREGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQ 167 + A G LA +QHE+DHLNG+LF+D L R+ + + K M + + Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKLVERIPEEDLEKYMEEHEK 162 >gi|255527719|ref|ZP_05394575.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296187196|ref|ZP_06855593.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255508594|gb|EET84978.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296048231|gb|EFG87668.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 150 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ SR +E ++ I ++++M E MY+T +G GLA Q+G+L RLV Sbjct: 1 MALRQIRLFGDEILRKKSREVEVVDDKIRQILNDMAETMYNTENGGGLAGPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D+ + +NPKII V EGCLS P+ +KR A + V+ ++ N Sbjct: 61 VMDMGG-----GLIKLVNPKIIEQEGTQEVI-EGCLSSPNTWGKLKRPAKVKVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGSLAKCFCHEIDHLEGILFTDLVTE 147 >gi|153941088|ref|YP_001391920.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|170756373|ref|YP_001782237.1| peptide deformylase [Clostridium botulinum B1 str. Okra] gi|152936984|gb|ABS42482.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|169121585|gb|ACA45421.1| peptide deformylase [Clostridium botulinum B1 str. Okra] gi|295319940|gb|ADG00318.1| peptide deformylase [Clostridium botulinum F str. 230613] Length = 178 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+ + + P++ INPK +EGCLS P Y V R + + ++ + Sbjct: 83 IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|119509174|ref|ZP_01628325.1| polypeptide deformylase [Nodularia spumigena CCY9414] gi|119466340|gb|EAW47226.1| polypeptide deformylase [Nodularia spumigena CCY9414] Length = 177 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 6/153 (3%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++ DP+LR+ + +E + I LID++ + +G+G+AA Q+ YRL ++ Sbjct: 6 PIIQLGDPVLRQKAAWVENTQDKYIQKLIDDLTVTVAQANGVGIAAPQVAASYRLFIVAS 65 Query: 64 QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + N P INP+II S + EGCLS+P R V R +T+ Y D N Sbjct: 66 RPNLRYPNAPVMEPTAMINPRIIDHSTEIVKGWEGCLSVPGIRGLVPRYKHLTIAYTDRN 125 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + +A QHE DHL+G++F+D + Sbjct: 126 GKFKKQELTDFVARIFQHEYDHLDGVVFVDRVE 158 >gi|108762860|ref|YP_635455.1| peptide deformylase [Myxococcus xanthus DK 1622] gi|108466740|gb|ABF91925.1| peptide deformylase [Myxococcus xanthus DK 1622] Length = 168 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +VI+P +L ++P+ + L++ M E M +GIG+AA Q+G R+ + Sbjct: 1 MA-RDIVIWPHKVLTSSTKPVTDFGPPLETLLEQMAESMKEAEGIGIAANQVGESLRVAL 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +D +NP+I+ + +EGCLS+P R + VRY D +A+ Sbjct: 60 VGRED----GTFFEIVNPQILEKK-EPVTMEEGCLSVPREWEKCPRFHKVKVRYQDKSAE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+G LA LQHE+DHL+G +F+DHLS LKR +I +M KL +++ Sbjct: 115 WHELEAEGRLAHVLQHEIDHLDGHVFVDHLSSLKRTLILDRMKKLQKVK 163 >gi|160933492|ref|ZP_02080880.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753] gi|156867369|gb|EDO60741.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753] Length = 162 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 4/146 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V D IL + RP+EK + + L+D+M E + +G+GLAA Q+G+L R+V+ Sbjct: 1 MAIRNIVKEGDGILGKKCRPVEKFDPKLWMLLDDMKETLREANGVGLAAPQVGILRRVVI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ D INP+I+ S + EGCLS P V+R + + V+ + + Sbjct: 61 VNIGDEDGDIE---LINPEIVEASGE-QDGPEGCLSCPGEWGMVRRPSHVVVKAQNRRGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 I + L A HELDHL GILF Sbjct: 117 FFEITGEELKARAFCHELDHLEGILF 142 >gi|254468385|ref|ZP_05081791.1| peptide deformylase [beta proteobacterium KB13] gi|207087195|gb|EDZ64478.1| peptide deformylase [beta proteobacterium KB13] Length = 162 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 75/161 (46%), Gaps = 5/161 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DL 63 +P L +VS P++ D+ LID+M E M + DG GLAA QIGV RLV+ D Sbjct: 1 MGNPELLKVSEPVDFEKEDLTTLIDDMKETMKANDGAGLAAPQIGVFKRLVIFGFDTNDR 60 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 A V INP I SD+ EGCLS+P R V R I D Sbjct: 61 YPEADSVPFTVLINPIITPLSDEKENGWEGCLSVPGLRGVVPRFTHIKYEGYDAEGNKIE 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A +QHE DHL+GIL+ + + +++ K Sbjct: 121 REVEDFHARVVQHECDHLDGILYPMKIEDYRYFGFHEEIFK 161 >gi|315651132|ref|ZP_07904164.1| peptide deformylase [Eubacterium saburreum DSM 3986] gi|315486597|gb|EFU76947.1| peptide deformylase [Eubacterium saburreum DSM 3986] Length = 174 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + + ++++N LI++M+E M G+GLAA QIGVL R+VV Sbjct: 9 MAIRAIRVMGDNVLNKKCKEVKEVNDRTKILIEDMIETMREAGGVGLAAPQIGVLKRIVV 68 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ + N V INP II + V EGCLS+P VKR ++ + D + Sbjct: 69 IETEP----DNVHVLINPVIIKQDGE-QVGYEGCLSVPGKSGIVKRPNYVAAKAFDIDMN 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +GLLA + HE HL+G L++D + D +++ K+ + Sbjct: 124 EYTIEGEGLLARAICHECAHLDGELYVDLVEGELID--NEELEKMQKEE 170 >gi|153933577|ref|YP_001384865.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153936131|ref|YP_001388335.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|152929621|gb|ABS35121.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152932045|gb|ABS37544.1| peptide deformylase [Clostridium botulinum A str. Hall] Length = 178 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+ + + P++ INPK +EGCLS P Y V R + + ++ + Sbjct: 83 IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|150018308|ref|YP_001310562.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] gi|149904773|gb|ABR35606.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] Length = 150 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 7/156 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + +F D +LR+ S+ +E ++ I ++D+M+E MY+T +G GLAA QIG+L RLV Sbjct: 1 MALRKIRLFGDEVLRKKSKEVEVVDEKIRQILDDMVETMYNTENGGGLAAPQIGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLS P + R +TV+ +D N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGSQEVI-EGCLSNPHVFGRLLRPEKVTVQALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + I+ G LA C HE+DHL GILF D ++ + Sbjct: 115 KEIILTGTGDLAKCFCHEIDHLEGILFTDFVTEYLK 150 >gi|220906351|ref|YP_002481662.1| peptide deformylase [Cyanothece sp. PCC 7425] gi|219862962|gb|ACL43301.1| peptide deformylase [Cyanothece sp. PCC 7425] Length = 190 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 6/170 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P+LR+ ++ + ++ I LID++L + +G+GLAA Q+G +++ ++ Sbjct: 15 VLDITQLGNPVLRQTAQFVPEVGHPQIQTLIDDLLVTVKQANGVGLAAPQVGASWQIFIV 74 Query: 62 DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + HA P INP+++ +D EGCLSIP R V R I V Y+D Sbjct: 75 ASRPNPRYPHAPEMEPTAMINPRLLAHNDQQVKDWEGCLSIPGLRGLVPRYQGIEVEYLD 134 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + + +A QHE DHLNG++F+D L + ++ KLV Sbjct: 135 RRGKTRRQQLHDFVARIFQHEQDHLNGVVFLDRLETTLELVTEQEYQKLV 184 >gi|317056476|ref|YP_004104943.1| peptide deformylase [Ruminococcus albus 7] gi|315448745|gb|ADU22309.1| peptide deformylase [Ruminococcus albus 7] Length = 155 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L +V RP+EK + + +D+M E + +G+GLAA Q+ +L R + Sbjct: 1 MAVRNILNKSDETLHKVCRPVEKFDEKLWTWLDDMKETLAQANGVGLAAPQVAILRRFCI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D N INP+I S++ EGCLS P V R + + D N + Sbjct: 61 IDVGD----GNVYELINPEITWKSEETQRVLEGCLSCPGQWGYVTRPMSVKFKAQDRNGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + L A + HE HL+G LF + + Sbjct: 117 WYEMEVSELFAQAVCHETAHLDGHLFTEIVEEF 149 >gi|225850189|ref|YP_002730423.1| peptide deformylase [Persephonella marina EX-H1] gi|225646575|gb|ACO04761.1| peptide deformylase [Persephonella marina EX-H1] Length = 176 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 5/170 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + +PD IL++ + ++ + + +D M + MY DG+GLAA QIG+ YR++V Sbjct: 1 MTYEIRTWPDKILKQKMKEVDFFSDGKLKEYVDVMFKKMYELDGVGLAANQIGIPYRIIV 60 Query: 61 IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ID ++ + +V INP+I+ + EGCLS P + + R+ + V+ D Sbjct: 61 IDTTVREEEGEKGVKLVLINPQIVEKEGEIEST-EGCLSFPGVQITIPRAERVKVKAKDI 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N I L+ LQHE+DH+NGI FI++L +K+ M+ +K K + Sbjct: 120 NGNDIEIEGKDFLSVVLQHEIDHINGIPFINYLPPVKKRMVLEKYMKSRK 169 >gi|229541139|ref|ZP_04430199.1| peptide deformylase [Bacillus coagulans 36D1] gi|229325559|gb|EEN91234.1| peptide deformylase [Bacillus coagulans 36D1] Length = 161 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+ +V +P IL + + S + ++D M E M DG+GLAA Q+G+ ++ V Sbjct: 1 MM--EIVKYPAAILEEKCKRVTAFGSSLKAVLDEMYETMLEADGVGLAAPQVGINQQIAV 58 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D R + INPKI+T + EGCLS P V R+ ++ V+ D N + Sbjct: 59 IDTGDGTGRID---LINPKIVTRRGE-QTDVEGCLSFPGVYGTVSRAHYVKVKAQDANGR 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 I A+ LA LQHE+DHL+G+LF + Sbjct: 115 AFTIEAEDFLARALQHEIDHLHGVLFTSKI 144 >gi|241608057|ref|XP_002405931.1| polypeptide deformylase, putative [Ixodes scapularis] gi|215500709|gb|EEC10203.1| polypeptide deformylase, putative [Ixodes scapularis] Length = 164 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D +L+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKILQTLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + ++ + + FINP+I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 N-NKSSTIAFINPEITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 A+G LAT +QHE+D+LNG F+D+LS+LKRD + KK Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKK 164 >gi|331269019|ref|YP_004395511.1| peptide deformylase [Clostridium botulinum BKT015925] gi|329125569|gb|AEB75514.1| peptide deformylase [Clostridium botulinum BKT015925] Length = 159 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V + +LRR S+ IE I+ +++ LI ++ + +YS DG+GLAA QIGVL R + Sbjct: 1 MAIKDIVTTENKLLRRKSKRIESIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+D P++ +NPKI+ + EGCLS P Y V R + V ++ + Sbjct: 61 IDLRDGNG---PLILLNPKILKKIGKYEDG-EGCLSYPGYEGIVVRPRKVIVSGINEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GL+A + HE DHL+GIL++D ++ + Sbjct: 117 SAQYEATGLMARAICHETDHLDGILYMDLAKKMYK 151 >gi|29840076|ref|NP_829182.1| peptide deformylase [Chlamydophila caviae GPIC] gi|33301049|sp|Q823U4|DEF_CHLCV RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|29834424|gb|AAP05060.1| polypeptide deformylase [Chlamydophila caviae GPIC] Length = 186 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + ILRR + I +I L+ +M E M + G+GLAA Q+G L V+ Sbjct: 1 MIRELEYYGSHILRRKADIIPEITDATRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVM 60 Query: 62 DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ + P V+INP + S+D + +EGCLSIP RADV R ITV + Sbjct: 61 CVEGETEEGDLIFCDFPKVYINPVLSNPSEDLVIGREGCLSIPGLRADVYRPQSITVTAV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167 + + Q + +G A + HE DHL+G+L+ID + K + K+ + Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLHGVLYIDKMEEPKDIKKFKASLEKIRR 173 >gi|320530181|ref|ZP_08031251.1| peptide deformylase [Selenomonas artemidis F0399] gi|320137614|gb|EFW29526.1| peptide deformylase [Selenomonas artemidis F0399] Length = 156 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+L++V+ PI+++ L+D+M E MY+++G+GLAA QIG R+VV Sbjct: 1 MAVLEIKKAGDPVLKQVAEPIDRLTKRHRQLLDDMAETMYASNGVGLAAPQIGKSIRMVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D + +NP I T + V EGCLS+P DV+R+A +TV Y D ++ Sbjct: 61 IDVED---EHGLLELVNPVI-TMREGSVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + + A+GLLA C+QHE DHL+G LFID Sbjct: 117 RRSLTAEGLLARCIQHECDHLDGRLFID 144 >gi|315226589|ref|ZP_07868377.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105] gi|315120721|gb|EFT83853.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105] Length = 176 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + I PDP+LR V PI I + NL+ ++L+ + GL+A QIGV R Sbjct: 15 TIRDIRIVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFSY 74 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ +NPKI+ S + EGCLS+P +R+ + V +D + + Sbjct: 75 NIDGKVGY-----VLNPKIVARSGE-QYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGKK 128 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ G++ LQHE DHL+G +++D L + +R + M + + Sbjct: 129 IVLEGKGIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRRQQK 174 >gi|322806950|emb|CBZ04520.1| peptide deformylase [Clostridium botulinum H04402 065] Length = 178 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAVTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+ + + P++ INPK +EGCLS P Y V R + + ++ + Sbjct: 83 IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|88704771|ref|ZP_01102484.1| Peptide deformylase [Congregibacter litoralis KT71] gi|88701092|gb|EAQ98198.1| Peptide deformylase [Congregibacter litoralis KT71] Length = 169 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 3/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR S + + + + ++++ E + + IGL+A Q G+ R++V Sbjct: 1 MAILDIIEVPDERLREHSEAVSRFDEALQQQVNDLFETLGHSGAIGLSAPQTGIFKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + D V+INP+I+ S V +E CLS+P +V R + +R D + + Sbjct: 61 VHVPDDD--FGARVYINPEILKRSKSRYV-EESCLSVPGIEGNVVRCIRVKLRAQDIHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D L A C+QHE+DHL+GILF D LS K+ + Sbjct: 118 LCEFDVDDLHAVCVQHEVDHLDGILFTDRLSWFKKLRLR 156 >gi|163785969|ref|ZP_02180417.1| peptide deformylase [Flavobacteriales bacterium ALC-1] gi|159877829|gb|EDP71885.1| peptide deformylase [Flavobacteriales bacterium ALC-1] Length = 196 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + D +L++ ++ I+K + LI+NM E MY G+GLAA QIG+ RL ++ Sbjct: 1 MILPIVAYGDAVLKKKAKDIDKDYPKLNELIENMYETMYGAYGVGLAAPQIGLPIRLFLV 60 Query: 62 DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + A + FIN +I+ D + EGCLSIPD R DV R Sbjct: 61 DTEPFAEDESFSEEEQEQLKNFKKTFINAQILEEEGDEWAFNEGCLSIPDVREDVFRQPK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ++Y D N + I DGL+A +QHE DH+ G+LF D LS K+ +I K++ + + + Sbjct: 121 IKIQYQDENFEIHIEEYDGLIARVIQHEYDHIEGVLFTDKLSSFKKRLIKGKLTNISKGK 180 >gi|152983750|ref|YP_001349601.1| peptide deformylase [Pseudomonas aeruginosa PA7] gi|150958908|gb|ABR80933.1| peptide deformylase [Pseudomonas aeruginosa PA7] Length = 179 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++ LID+M E M G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAPPVPAESFGSQELQRLIDDMFETMRHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + + P + +NP+I D+ EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAPAVPPTILLNPRITALDDEIEEGWEGCLSVPGLRGMVPRHRRIRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D + +G A +QHE DHL G L+ ++ + T+ + Sbjct: 121 GVDPQGKPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFGKFGFTEVL 169 >gi|282863355|ref|ZP_06272414.1| peptide deformylase [Streptomyces sp. ACTE] gi|282561690|gb|EFB67233.1| peptide deformylase [Streptomyces sp. ACTE] Length = 219 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 4/166 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + + +L R + + + LID+M MY DG GLAA Q+ V RL V Sbjct: 37 VRRITVVGEEVLSRPCQEVTSFGSPGLAALIDDMFVTMYVADGAGLAANQVDVDLRLFVY 96 Query: 62 DLQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + S EGCLS+P + R+ TVR D + Sbjct: 97 DCPDDQGVRHVGHIVNPVLDQPDPGSRRLVDDSEGCLSVPGASMTLPRTDRATVRGFDKD 156 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +I G A CLQHE DHL G ++D LS+ R ++M + Sbjct: 157 GNPLVIEGTGYFARCLQHESDHLVGHTYLDRLSKRDRKDALRQMEE 202 >gi|294790924|ref|ZP_06756082.1| peptide deformylase [Scardovia inopinata F0304] gi|294458821|gb|EFG27174.1| peptide deformylase [Scardovia inopinata F0304] Length = 162 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + PDPILR V PI I I +L+ ++ + + GL+A QIGV R Sbjct: 1 MSIREIRCVPDPILRTVCDPITTITPAIRSLVRDLTDTVDDPGRAGLSANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +NP+++ S + EGCLS+P +R+ + V +D N Sbjct: 61 FNIEGKVDY-----ILNPRLVKTSGE-QYGDEGCLSVPGLWYKTRRADYARVEGIDLNGH 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +++ GL+ LQHE DHL+G +++D L + +R + M + Sbjct: 115 KKVLEGHGLMGRMLQHECDHLDGHVYLDRLEKEERRAALRYMRSRQK 161 >gi|50235447|gb|AAT70831.1| polypeptide deformylase [Borrelia hermsii] Length = 185 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 3/164 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PD +LR ++ + I+ ++ N+ M+ +M G+GLAA Q+G+ + V+ Sbjct: 22 EIVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVGLDLSIFVV--- 78 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP I S + SVY+EGCLSIP D+ R ITV D N + I Sbjct: 79 RENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKFFKI 138 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + LLA +QHE+DHL G+LFID+ R+ + K K +L Sbjct: 139 ESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMKGRRL 182 >gi|218960357|ref|YP_001740132.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans] gi|167729014|emb|CAO79925.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans] Length = 186 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 67/165 (40%), Positives = 96/165 (58%), Gaps = 3/165 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ ++ D LR+ I+ + I++++ MY+ DGIG+AA Q+G YR++VID Sbjct: 7 ILPVRLYGDDFLRKKLPEIDYNTPGLPEFIEDLIYTMYARDGIGIAANQVGSFYRMIVID 66 Query: 63 LQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + ++K+P+V INP I + VY+EGC+S+PD ADV RS IT Y D Sbjct: 67 PEQDNKLNKKSPIVMINPVIENKEGE-VVYEEGCISLPDIFADVSRSKKITYSYTDRMGN 125 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A+ + A +QHE DHL GILFIDHL L R I K+ KL Sbjct: 126 RITETAEEIKAVVIQHEFDHLEGILFIDHLGTLDRLKIMHKLKKL 170 >gi|57234458|ref|YP_181493.1| peptide deformylase [Dehalococcoides ethenogenes 195] gi|123759709|sp|Q3Z8F6|DEF_DEHE1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|57224906|gb|AAW39963.1| peptide deformylase [Dehalococcoides ethenogenes 195] Length = 167 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 90/155 (58%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+PILR+ ++ + I+ I LID+M+E M S DG GLAA Q+GV RL+V Sbjct: 1 MAIRRICELPEPILRKKAKKVPSIDGSIQTLIDDMIETMKSADGAGLAAPQVGVSLRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP+I+ V EGCLSIP Y ++ R+ +T + +D + + Sbjct: 61 FREPDAKEA---TVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I G++A L+HE +HL+GIL+IDHL ++ Sbjct: 117 AFRIKGTGVVAQLLEHETEHLDGILYIDHLESEEK 151 >gi|298252788|ref|ZP_06976582.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] gi|297533152|gb|EFH72036.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] Length = 162 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR I +I + +L+D++LE + GL+A QIGV +R Sbjct: 1 MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP I + EGCLS+P +R+ + +D + + Sbjct: 61 YNINGRIGY-----ILNPVIEELKGE-QYDDEGCLSVPGLWYKTRRANYARACGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ +GL+A +QHE DHL+G +++D L + R +++ ++ Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLDRLEKDVRRQALRELRNNMR 161 >gi|325680310|ref|ZP_08159870.1| peptide deformylase [Ruminococcus albus 8] gi|324108019|gb|EGC02275.1| peptide deformylase [Ruminococcus albus 8] Length = 155 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L + +P+EK + + +D+M E + +G+GLAA Q+ +L R + Sbjct: 1 MAVRKILNKSDETLHKKCKPVEKFDEKLWTWLDDMRETLAQANGVGLAAPQVAILRRFCI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D INP+I S++ EGCLS P+ V R + + D N + Sbjct: 61 IDVGD----GKVYELINPEITWKSEETQYVLEGCLSCPNEWGYVTRPKSVKFKAQDRNGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + L A + HE HL+G LF + + Sbjct: 117 WYEMEVSDLFAQAVCHETAHLDGHLFTEIIEE 148 >gi|149182344|ref|ZP_01860822.1| peptide deformylase [Bacillus sp. SG-1] gi|148849963|gb|EDL64135.1| peptide deformylase [Bacillus sp. SG-1] Length = 161 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 82/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +P+ IL R + + + + +D+M + M + DG+GLAA Q+G + + Sbjct: 1 MAILPIVTYPNEILEIECRKVTEFDKKLRKFLDDMYDTMIAADGVGLAAPQVGKDIAVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D +NP+++ + + EGCLS P+ +V R ++ V + D + Sbjct: 61 VDIGDETGTIE---MVNPEVLEVRGE-QIDLEGCLSFPNLYGEVSRPEYVKVTFQDRKGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA + HE+DHL+G+LF + R Sbjct: 117 KLLVEAEGFLARAILHEIDHLHGVLFTSKVIR 148 >gi|300691609|ref|YP_003752604.1| peptide deformylase [Ralstonia solanacearum PSI07] gi|299078669|emb|CBJ51327.1| Peptide deformylase [Ralstonia solanacearum PSI07] Length = 170 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 9 FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 D L RV++P+++ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGFDRSE 60 Query: 68 HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + V INP I SD+ EGCLS+P R V R + D + Q Sbjct: 61 RYPDAPAVPKTVLINPTIEPLSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGQAI 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+G A +QHE DHL GIL+ + R T+ Sbjct: 121 DRIAEGFHARVVQHECDHLQGILYPMRVRDFTRFGFTE 158 >gi|254414456|ref|ZP_05028222.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] gi|196178686|gb|EDX73684.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] Length = 177 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 7/158 (4%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M K + +PILR++++PI+ + + I LI+ + + +G+G+AA QI RL Sbjct: 1 MTKSLEIAQLGNPILRQLAQPIDNVQDESIQKLIEALKAKAVAANGVGIAAPQISQSCRL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ + + N P INP+I+ SD EGCLSIP R V R I V Sbjct: 61 FIVASRPNPRYPNAPTMEPTAMINPQIVAHSDQVVKGWEGCLSIPGIRGLVPRYQAIEVE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y + + Q +A +QHE DHLNGI+F+D + Sbjct: 121 YTNQEGKPQRQQLTDFVARIVQHEYDHLNGIVFVDRVE 158 >gi|321315338|ref|YP_004207625.1| peptide deformylase [Bacillus subtilis BSn5] gi|320021612|gb|ADV96598.1| peptide deformylase [Bacillus subtilis BSn5] Length = 160 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + +NP+I+ S + EGCLS P DV R+ ++ VR + + Sbjct: 61 VDIGDDRGRID---LVNPEILEKSGE-QTGIEGCLSFPGVYGDVTRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|257868125|ref|ZP_05647778.1| formylmethionine deformylase [Enterococcus casseliflavus EC30] gi|257874600|ref|ZP_05654253.1| formylmethionine deformylase [Enterococcus casseliflavus EC10] gi|325567766|ref|ZP_08144377.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] gi|257802239|gb|EEV31111.1| formylmethionine deformylase [Enterococcus casseliflavus EC30] gi|257808764|gb|EEV37586.1| formylmethionine deformylase [Enterococcus casseliflavus EC10] gi|325158539|gb|EGC70686.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] Length = 163 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 63/165 (38%), Positives = 102/165 (61%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LRR ++P++ I +++ L+D++ E M + DGIG+AA Q+G ++ ++ Sbjct: 1 MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++++ INP+II S + S+ EGCLSIP VKR+ ITVRY D + Sbjct: 61 EVEEDDR----FEMINPEIIASSGE-SLDVEGCLSIPHTFGTVKRADEITVRYFDREGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKL 165 + A G LA +QHE+DHLNG+LF+D L R+ + + K M + Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKLVERIPEEDLEKYMEEH 160 >gi|86357835|ref|YP_469727.1| peptide deformylase [Rhizobium etli CFN 42] gi|86281937|gb|ABC91000.1| peptide deformylase protein [Rhizobium etli CFN 42] Length = 164 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V +P+ ++ + L +++L M + G+G+ A IGVL R+ V Sbjct: 1 MPVRPILRYPHPGLKTVCQPVTAFDASLAALAEDLLATMRAAPGVGITAAHIGVLLRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +++NP+I S + + EG +S+P +V R I RY D Sbjct: 61 LELDRADGVR---LYVNPQITWRSQETISHAEGSVSMPGATEEVTRPRAIRFRYQDAGGI 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+G LA C+QHE+D L+GI ++ LSRLKR+ + KK K Sbjct: 118 VHEKAAEGFLAICVQHEVDQLDGIFWLQRLSRLKRERLVKKWEK 161 >gi|326383421|ref|ZP_08205108.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395] gi|326197827|gb|EGD55014.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395] Length = 197 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 11/174 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I +P+L + + P+E K +++I+ L+D+M + M + +G+GLAA QIG Sbjct: 1 MAILPICIIGEPVLHQPTTPVELDADSKPSAEIVTLLDDMYDTMDAANGVGLAANQIGEG 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 R+ V D D R+ V INP +I D EGCLS+P R+ + Sbjct: 61 LRMFVYDCPDGGVRRRGEV-INPVLETSEIPETMPDPDDNDEGCLSVPGEGFPTGRADWA 119 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V D N I +G A LQHE HL+G L++D L K + + Sbjct: 120 KVVGTDRNGDPVEIEGNGFFARMLQHETGHLDGFLYVDVLVGRNARAAKKAVKR 173 >gi|56475469|ref|YP_157058.1| peptide deformylase [Aromatoleum aromaticum EbN1] gi|56311512|emb|CAI06157.1| N-formylmethionyl-tRNA deformylase 2 [Aromatoleum aromaticum EbN1] Length = 175 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + L+ DP L + + P++ + ++ L+ ++ + M + G+GLAA QIGV ++V Sbjct: 1 MTIRTLLRMGDPRLLQPAEPVDAFGTVELAALVVDLFDTMAAHGGVGLAAPQIGVGLQMV 60 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + + V +NP I + EGCLS+P R V R + I + Sbjct: 61 IFGFERSERYPDAPPVPQTVLLNPVITPLGELVEEGWEGCLSVPGLRGMVPRHSRIRYQG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A+G A +QHE DHL G+L+ + R T+ + Sbjct: 121 ADSQGQTIDRIAEGFHARVVQHECDHLAGVLYPMRVRDFSRFGYTEVL 168 >gi|189502648|ref|YP_001958365.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus 5a2] gi|238692315|sp|B3ETT4|DEF_AMOA5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189498089|gb|ACE06636.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus 5a2] Length = 188 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 8/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + + ILR+ + PIE + +D+ LI++M M + G+GLAA QIG +L V+ Sbjct: 1 MIYPIVPYGESILRQTAAPIE-LGTDLETLIESMFITMNAAKGLGLAAPQIGKSIQLFVV 59 Query: 62 DLQDHAHR------KNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRY 114 D+ K+ V+INP + + + Y+EGCLSIP DV R+ + +++ Sbjct: 60 DVSPFVGDGMVQPDKHRKVYINPVLEIYQPNTITHYEEGCLSIPGIYVDVPRNKRVRIKF 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N Q Q + A +QHE DHL G L ID+L +R + K+ + Q R Sbjct: 120 FDRNWQAQEEDLVDMPARVVQHEYDHLYGKLHIDYLRADRRLRLKSKLENIKQGR 174 >gi|256372453|ref|YP_003110277.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331] gi|256009037|gb|ACU54604.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331] Length = 164 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 6/147 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ DP+L +R +E I++ + LI++M+ M+ G+GLAA Q+GV RL V Sbjct: 1 MPILPIRTIGDPVLSHRAREVETIDARLDQLIEDMIVTMHEAPGVGLAAPQVGVDLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D P V INP+I+ + Y+EGCLS+P Y ++R + +RY+ + + Sbjct: 61 WDIGD-----GPDVAINPEIVERTG-TWRYEEGCLSVPGYFWPIERPRTVLLRYVTRDGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 + LL QHE DHL+G+L I Sbjct: 115 VAELEGSDLLGRVFQHETDHLDGVLLI 141 >gi|255325949|ref|ZP_05367039.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] gi|255296964|gb|EET76291.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] Length = 201 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR V PI + D+ LID+MLE MY G+GLA Q+G+ ++ Sbjct: 1 MTILSIRTVGDPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP + +D + GCLS+P ++ R + V +D + Sbjct: 61 FGGIDDRE----GYIINPVLEVGEEDQEGGE-GCLSVPGQKSATPRKNWARVTGVDRRGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ +GL A LQHE DHL+G LFID L R + + + Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRQRVMRALRA 159 >gi|170761101|ref|YP_001787941.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] gi|169408090|gb|ACA56501.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] Length = 178 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I N+ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKNLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+ + + P++ INPK + +EGCLS P Y V R + + ++ + Sbjct: 83 IDLR---NGQEPIILINPKFLKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|311742536|ref|ZP_07716345.1| peptide deformylase [Aeromicrobium marinum DSM 15272] gi|311314164|gb|EFQ84072.1| peptide deformylase [Aeromicrobium marinum DSM 15272] Length = 203 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 3/168 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P+ + P++ R + + D+ L+ +M+ MY+ +G+GLAA Q+GV ++ V D Sbjct: 15 VRPITRWGTPVMHRELADVTTFDEDLRVLVRDMVATMYAANGVGLAANQVGVDLKVFVFD 74 Query: 63 LQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + V NP + EGCLS+P R V D + Sbjct: 75 CPDEDSERVTGVVCNPVLTLPALGDRRLDDDDEGCLSLPGAFTTCARPDAAHVSGFDEHG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GLLA CLQHE DHL G +F D + R + K ++ + Sbjct: 135 EPVEFTGSGLLARCLQHETDHLFGTVFGDRVPERSRKKLYKTHREVAE 182 >gi|312129572|ref|YP_003996912.1| peptide deformylase [Leadbetterella byssophila DSM 17132] gi|311906118|gb|ADQ16559.1| peptide deformylase [Leadbetterella byssophila DSM 17132] Length = 193 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 15/166 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++ + IL++ IEK ++ LI +M E M + +G GLA+ QIG+ RL ++ Sbjct: 1 MKRPILAYGHSILKQKCNDIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60 Query: 62 DLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 D + + +FIN KII S + EGCLSIP+ VKR Sbjct: 61 DSKTTFENLDEQDQGIYFEKNDSGIKEIFINAKIIERSAELWEDDEGCLSIPELSQKVKR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT+ Y + + + Q G A +QHE DH GIL++D+L Sbjct: 121 PWTITIAYYNKDFELQRKTFSGTTARMIQHEYDHTEGILYLDYLKP 166 >gi|314914712|gb|EFS78543.1| peptide deformylase [Propionibacterium acnes HL005PA4] Length = 200 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 3/168 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + + + +L +RP+ + + D+ LI +M M + DG+GLAA Q+GV L V Sbjct: 22 RRVTRWGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVYAC 81 Query: 64 QDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + F NP + EGCLS P + R T D Sbjct: 82 PDANNIVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGN 141 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A CLQHE DH NGI+F D LS+ R + ++ + L Sbjct: 142 DITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189 >gi|255262069|ref|ZP_05341411.1| peptide deformylase [Thalassiobium sp. R2A62] gi|255104404|gb|EET47078.1| peptide deformylase [Thalassiobium sp. R2A62] Length = 164 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + V++PD LR + + +I DI + D M+E M + G+GLAAVQIGV RL V+ Sbjct: 1 MTRSYVMWPDKRLRTAASDVAEITDDIRAIWDEMIEAMDAMPGVGLAAVQIGVPLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D R + NP+I+ S + +QE ++P A V R +TV++MD N + Sbjct: 61 DASDA--RGQAIRMANPEILFASAEMRTHQEASPNLPGVSAIVGRPRAVTVQFMDANGEL 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL AT +QH++DHL G ++ DH+SR KRDM+ KK +KL Sbjct: 119 VQRDLVGLWATSVQHQIDHLAGRMYFDHVSRTKRDMLIKKSAKL 162 >gi|50843003|ref|YP_056230.1| polypeptide deformylase [Propionibacterium acnes KPA171202] gi|289426491|ref|ZP_06428234.1| peptide deformylase [Propionibacterium acnes SK187] gi|289428707|ref|ZP_06430390.1| peptide deformylase [Propionibacterium acnes J165] gi|295131074|ref|YP_003581737.1| peptide deformylase [Propionibacterium acnes SK137] gi|50840605|gb|AAT83272.1| polypeptide deformylase [Propionibacterium acnes KPA171202] gi|289153219|gb|EFD01937.1| peptide deformylase [Propionibacterium acnes SK187] gi|289158105|gb|EFD06325.1| peptide deformylase [Propionibacterium acnes J165] gi|291377293|gb|ADE01148.1| peptide deformylase [Propionibacterium acnes SK137] gi|313763558|gb|EFS34922.1| peptide deformylase [Propionibacterium acnes HL013PA1] gi|313773497|gb|EFS39463.1| peptide deformylase [Propionibacterium acnes HL074PA1] gi|313793950|gb|EFS41974.1| peptide deformylase [Propionibacterium acnes HL110PA1] gi|313801337|gb|EFS42588.1| peptide deformylase [Propionibacterium acnes HL110PA2] gi|313807983|gb|EFS46464.1| peptide deformylase [Propionibacterium acnes HL087PA2] gi|313811548|gb|EFS49262.1| peptide deformylase [Propionibacterium acnes HL083PA1] gi|313813394|gb|EFS51108.1| peptide deformylase [Propionibacterium acnes HL025PA1] gi|313816738|gb|EFS54452.1| peptide deformylase [Propionibacterium acnes HL059PA1] gi|313819551|gb|EFS57265.1| peptide deformylase [Propionibacterium acnes HL046PA2] gi|313822126|gb|EFS59840.1| peptide deformylase [Propionibacterium acnes HL036PA1] gi|313823640|gb|EFS61354.1| peptide deformylase [Propionibacterium acnes HL036PA2] gi|313825965|gb|EFS63679.1| peptide deformylase [Propionibacterium acnes HL063PA1] gi|313829432|gb|EFS67146.1| peptide deformylase [Propionibacterium acnes HL063PA2] gi|313831289|gb|EFS69003.1| peptide deformylase [Propionibacterium acnes HL007PA1] gi|313834899|gb|EFS72613.1| peptide deformylase [Propionibacterium acnes HL056PA1] gi|313839941|gb|EFS77655.1| peptide deformylase [Propionibacterium acnes HL086PA1] gi|314919327|gb|EFS83158.1| peptide deformylase [Propionibacterium acnes HL050PA1] gi|314920764|gb|EFS84595.1| peptide deformylase [Propionibacterium acnes HL050PA3] gi|314924710|gb|EFS88541.1| peptide deformylase [Propionibacterium acnes HL036PA3] gi|314930643|gb|EFS94474.1| peptide deformylase [Propionibacterium acnes HL067PA1] gi|314954401|gb|EFS98807.1| peptide deformylase [Propionibacterium acnes HL027PA1] gi|314957515|gb|EFT01618.1| peptide deformylase [Propionibacterium acnes HL002PA1] gi|314962119|gb|EFT06220.1| peptide deformylase [Propionibacterium acnes HL002PA2] gi|314963697|gb|EFT07797.1| peptide deformylase [Propionibacterium acnes HL082PA1] gi|314968475|gb|EFT12573.1| peptide deformylase [Propionibacterium acnes HL037PA1] gi|314974164|gb|EFT18260.1| peptide deformylase [Propionibacterium acnes HL053PA1] gi|314976545|gb|EFT20640.1| peptide deformylase [Propionibacterium acnes HL045PA1] gi|314978999|gb|EFT23093.1| peptide deformylase [Propionibacterium acnes HL072PA2] gi|314984364|gb|EFT28456.1| peptide deformylase [Propionibacterium acnes HL005PA1] gi|314986554|gb|EFT30646.1| peptide deformylase [Propionibacterium acnes HL005PA2] gi|314990913|gb|EFT35004.1| peptide deformylase [Propionibacterium acnes HL005PA3] gi|315079547|gb|EFT51540.1| peptide deformylase [Propionibacterium acnes HL053PA2] gi|315081224|gb|EFT53200.1| peptide deformylase [Propionibacterium acnes HL078PA1] gi|315083591|gb|EFT55567.1| peptide deformylase [Propionibacterium acnes HL027PA2] gi|315087107|gb|EFT59083.1| peptide deformylase [Propionibacterium acnes HL002PA3] gi|315089281|gb|EFT61257.1| peptide deformylase [Propionibacterium acnes HL072PA1] gi|315095304|gb|EFT67280.1| peptide deformylase [Propionibacterium acnes HL038PA1] gi|315099184|gb|EFT71160.1| peptide deformylase [Propionibacterium acnes HL059PA2] gi|315100332|gb|EFT72308.1| peptide deformylase [Propionibacterium acnes HL046PA1] gi|315106855|gb|EFT78831.1| peptide deformylase [Propionibacterium acnes HL030PA1] gi|315108984|gb|EFT80960.1| peptide deformylase [Propionibacterium acnes HL030PA2] gi|327328434|gb|EGE70196.1| peptide deformylase [Propionibacterium acnes HL096PA2] gi|327329700|gb|EGE71456.1| peptide deformylase [Propionibacterium acnes HL096PA3] gi|327334216|gb|EGE75930.1| peptide deformylase [Propionibacterium acnes HL097PA1] gi|327444220|gb|EGE90874.1| peptide deformylase [Propionibacterium acnes HL043PA2] gi|327444900|gb|EGE91554.1| peptide deformylase [Propionibacterium acnes HL043PA1] gi|327446386|gb|EGE93040.1| peptide deformylase [Propionibacterium acnes HL013PA2] gi|327452026|gb|EGE98680.1| peptide deformylase [Propionibacterium acnes HL092PA1] gi|327454936|gb|EGF01591.1| peptide deformylase [Propionibacterium acnes HL087PA3] gi|327457777|gb|EGF04432.1| peptide deformylase [Propionibacterium acnes HL083PA2] gi|328752375|gb|EGF65991.1| peptide deformylase [Propionibacterium acnes HL020PA1] gi|328755230|gb|EGF68846.1| peptide deformylase [Propionibacterium acnes HL087PA1] gi|328758290|gb|EGF71906.1| peptide deformylase [Propionibacterium acnes HL025PA2] gi|328760021|gb|EGF73603.1| peptide deformylase [Propionibacterium acnes HL099PA1] gi|332675954|gb|AEE72770.1| peptide deformylase 3 [Propionibacterium acnes 266] Length = 200 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 3/168 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + + + +L +RP+ + + D+ LI +M M + DG+GLAA Q+GV L V Sbjct: 22 RRVTRWGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVYAC 81 Query: 64 QDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + F NP + EGCLS P + R T D Sbjct: 82 PDANNIVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGN 141 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A CLQHE DH NGI+F D LS+ R + ++ + L Sbjct: 142 DITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189 >gi|218899020|ref|YP_002447431.1| peptide deformylase [Bacillus cereus G9842] gi|228902371|ref|ZP_04066527.1| Peptide deformylase [Bacillus thuringiensis IBL 4222] gi|228909692|ref|ZP_04073515.1| Peptide deformylase [Bacillus thuringiensis IBL 200] gi|228966817|ref|ZP_04127861.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str. T04001] gi|218544444|gb|ACK96838.1| peptide deformylase [Bacillus cereus G9842] gi|228792916|gb|EEM40474.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str. T04001] gi|228849981|gb|EEM94812.1| Peptide deformylase [Bacillus thuringiensis IBL 200] gi|228857269|gb|EEN01773.1| Peptide deformylase [Bacillus thuringiensis IBL 4222] Length = 156 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDVDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|241764867|ref|ZP_04762871.1| peptide deformylase [Acidovorax delafieldii 2AN] gi|241365616|gb|EER60346.1| peptide deformylase [Acidovorax delafieldii 2AN] Length = 197 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 7/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ DP L R+++P++K + ++ LI +MLE M + G GLAA QIGV ++V Sbjct: 19 MTIHSILKMGDPRLLRIAQPVQKFDTPELHQLIRDMLETMRAAQGAGLAAPQIGVDLQVV 78 Query: 60 VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + R P V +NP I +D EGCLS+P R V R I Sbjct: 79 IFGSNEPNRRYPDRPLVPPTVLVNPVITPLGEDEEEDWEGCLSVPGLRGKVPRWLHIRYS 138 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + A+G A +QHE DHL G L+ + + T+ Sbjct: 139 GFDAHGSPIDRVAEGFHARVVQHECDHLMGKLYPMRVRDFSQFGFTE 185 >gi|118602931|ref|YP_904146.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567870|gb|ABL02675.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 185 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 20/167 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ +PD LR ++ + I+ I LI +M E +Y+ DGIGLAA Q+ ++VVI Sbjct: 1 MILPILNYPDKRLRTKAKHVNVIDETIQTLIKDMFETIYAKDGIGLAATQVDQHLQVVVI 60 Query: 62 DLQD-------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 DL+ + + +P+ FINP+I D + EGCLS+PD++A Sbjct: 61 DLEPNSQDDYQLFLKNFQRSSHKQSQKHHPLCFINPRIKEK-DGQEKHIEGCLSVPDFQA 119 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +V+R+ I V ++ + + A GLLA C+QHELDHL G+LF+D+ Sbjct: 120 EVQRANHIKVEALNEKGEVFTLQATGLLAICIQHELDHLKGVLFVDY 166 >gi|126662042|ref|ZP_01733041.1| peptide deformylase [Flavobacteria bacterium BAL38] gi|126625421|gb|EAZ96110.1| peptide deformylase [Flavobacteria bacterium BAL38] Length = 195 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 12/162 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + +P+LR+V I ++ I NM E MY G+GLAA Q+G+ RL ++ Sbjct: 1 MILPIYGYGEPVLRKVGEDISPEYPNLKETIVNMYETMYHAHGVGLAAPQVGLPIRLFIV 60 Query: 62 DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + + FIN KII D + EGCLSIPD R DV R Sbjct: 61 DTEPFSDSDDVSKEEAALMKDFKKTFINAKIIKEEGDVWGFNEGCLSIPDVREDVFRHDT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 IT+ Y D + + DGL+A +QHE DH+ GILF DH+S Sbjct: 121 ITIEYFDEDFNKKTEVYDGLIARVIQHEYDHIEGILFTDHIS 162 >gi|253681826|ref|ZP_04862623.1| peptide deformylase [Clostridium botulinum D str. 1873] gi|253561538|gb|EES90990.1| peptide deformylase [Clostridium botulinum D str. 1873] Length = 159 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V + +LRR S+ I++I+ +++ LI ++ + +YS DG+GLAA QIG+L R + Sbjct: 1 MAIKNIVTVENKLLRRKSKRIDRIDDEVLELIQDLKDTLYSGDGVGLAAPQIGILKRAFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+D P++ +NPKI+ + EGCLS P Y V R + V M+ + Sbjct: 61 IDLRDGNG---PLILLNPKILKKIGKYEDG-EGCLSYPGYEGIVVRPRKVVVSGMNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A GL+A + HE DHL+GIL++D ++ + Sbjct: 117 NVQYEATGLMARAICHETDHLDGILYMDLAKKMYK 151 >gi|227502026|ref|ZP_03932075.1| peptide deformylase [Corynebacterium accolens ATCC 49725] gi|227077310|gb|EEI15273.1| peptide deformylase [Corynebacterium accolens ATCC 49725] Length = 207 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P+VI +P+L + + P+E+ + ++ LI +M E M G+GLAA Q+G+ R Sbjct: 1 MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60 Query: 58 LVVIDLQDHAHRK-----------------NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 L V D NP++ + T D EGCLS+P Sbjct: 61 LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R+ + V D N + G A CLQHE HL+G ++ D L + K Sbjct: 121 GFPTGRADWARVTGKDENGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKRQAKK 180 Query: 161 KMSK 164 + + Sbjct: 181 AIKR 184 >gi|224538349|ref|ZP_03678888.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus DSM 14838] gi|224519978|gb|EEF89083.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus DSM 14838] Length = 171 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 15/171 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + KP+ I+ +P+LR+ IEK I +I+ M + + DG GLAA QI + +L V+ Sbjct: 1 MIKPITIYGNPVLRKECVSIEKTYPGIQEVIETMWQTQRNADGCGLAAPQINLPIKLFVV 60 Query: 62 DLQD---------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 + +D FIN +I +SD+ EGCLSIPD +V R Sbjct: 61 NSRDSYACMSIRERERFFSKDDCGIEETFINAEITGYSDEVWTTGEGCLSIPDLYEEVTR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 IT++Y D Q+ G A +QHE +H G L+IDHLS ++ + Sbjct: 121 PWSITIKYQDKEFNEQVKVYHGYTARIIQHEFEHTEGKLYIDHLSPFRKQL 171 >gi|302037899|ref|YP_003798221.1| peptide deformylase [Candidatus Nitrospira defluvii] gi|300605963|emb|CBK42296.1| Peptide deformylase [Candidatus Nitrospira defluvii] Length = 163 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 3/163 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L+ + + + + ++ +ML+ + ++ G+ LAA QIG +++V Sbjct: 1 MAIRPILQYPHQALKSTNAAVAPSDPAVQAVVQDMLDTLAASPGVALAAPQIGHAVQVIV 60 Query: 61 IDLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ + +V +NP I++ SV +EGCLS+PDY +V R V + Sbjct: 61 VDVSRKKGERGHGLVVLLNPVILSLEGKKSV-REGCLSVPDYTGNVLRYEEALVEGLTPE 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + A G A QHE+DHLNG+LF+D + L D+ +K Sbjct: 120 GRVVTVSASGFGALAFQHEVDHLNGMLFLDRIESLSTDLFRRK 162 >gi|268679608|ref|YP_003304039.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] gi|268617639|gb|ACZ12004.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] Length = 182 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 91/172 (52%), Gaps = 6/172 (3%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + PI+R V++P+ I + +I +LID M+ + G+G+AA Q+G ++++ Sbjct: 6 EIFQLGSPIIRFVAKPVSDILDPEIQSLIDAMIFTCKESKGVGIAAPQVGHSLSIIIMAS 65 Query: 64 QDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + P INP+II++S+ + EGCLS+P RA V R I VRY+D Sbjct: 66 YPNKRYPYAPLMEPTALINPEIISYSEASNKEWEGCLSLPGIRALVPRHNTIEVRYVDRE 125 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + Q + LA QHE DHL G +FID + + ++ K+ +L+ ++ Sbjct: 126 GKAQYAHFKDFLARLFQHEYDHLIGKVFIDRVESTQEIIMEKEYQRLMAEKE 177 >gi|187917944|ref|YP_001883507.1| peptide deformylase [Borrelia hermsii DAH] gi|119860792|gb|AAX16587.1| peptide deformylase [Borrelia hermsii DAH] Length = 174 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 3/164 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PD +LR ++ + I+ ++ N+ M+ +M G+GLAA Q+G+ + V+ Sbjct: 11 EIVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVGLDLSIFVV--- 67 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP I S + SVY+EGCLSIP D+ R ITV D N + I Sbjct: 68 RENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKFFKI 127 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + LLA +QHE+DHL G+LFID+ R+ + K K +L Sbjct: 128 ESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMKGRRL 171 >gi|226950032|ref|YP_002805123.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|226843262|gb|ACO85928.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] Length = 178 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDGITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+ + + P++ INPK +EGCLS P Y V R + + ++ + Sbjct: 83 IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|145589658|ref|YP_001156255.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048064|gb|ABP34691.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 181 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 8/161 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ DP L +++P++ + I LID++LE MY+ +G GLAA QIGV + Sbjct: 1 MAIQSILRMGDPRLLEIAKPVDPKLISSQQIQTLIDDLLETMYAVNGAGLAAPQIGVNQQ 60 Query: 58 LVVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +VV A + + INP I SD EGCLS+P RA V R I Sbjct: 61 VVVFGFDQNPRYPDAEQVPETILINPIITPLSDISMEDWEGCLSVPGLRAKVPRYTKIRY 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + D Q + A ++HE DHL G LF + Sbjct: 121 QGFDRYGQSIDRTVEDFHARVVRHECDHLIGKLFPMRVKDF 161 >gi|229098336|ref|ZP_04229283.1| Peptide deformylase [Bacillus cereus Rock3-29] gi|229104429|ref|ZP_04235098.1| Peptide deformylase [Bacillus cereus Rock3-28] gi|229117353|ref|ZP_04246731.1| Peptide deformylase [Bacillus cereus Rock1-3] gi|228666253|gb|EEL21717.1| Peptide deformylase [Bacillus cereus Rock1-3] gi|228679127|gb|EEL33335.1| Peptide deformylase [Bacillus cereus Rock3-28] gi|228685234|gb|EEL39165.1| Peptide deformylase [Bacillus cereus Rock3-29] Length = 156 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLMADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDVDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|291484124|dbj|BAI85199.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195] Length = 160 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + +NP+I+ S + EGCLS P DVKR+ ++ VR + + Sbjct: 61 VDIGDDRGRID---LVNPEILERSGE-QTGIEGCLSFPGVYGDVKRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|327398717|ref|YP_004339586.1| peptide deformylase [Hippea maritima DSM 10411] gi|327181346|gb|AEA33527.1| Peptide deformylase [Hippea maritima DSM 10411] Length = 168 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLV 59 M + +VI+PD L+ + I+ IN + + + ++LE M Y +G+AA QIG L R++ Sbjct: 1 MPVRDIVIYPDQRLKAICDEIKNINDEALQVAKDLLETMRYYNHTVGIAAPQIGELVRII 60 Query: 60 VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +D ++ INP+I+ +S +EGCLS+PDY +V R+ ITV+Y Sbjct: 61 AVDASKNKKGQKINHGELIMINPEILDWS-SIIKTREGCLSVPDYTGNVNRARKITVKYW 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 D + + +G A +QHE+DHL+GILFID + + D+ +K Sbjct: 120 DLDGKEHQFDTEGFEAVVIQHEIDHLDGILFIDRIISKRTDLFRRK 165 >gi|222148494|ref|YP_002549451.1| peptide deformylase [Agrobacterium vitis S4] gi|221735480|gb|ACM36443.1| peptide deformylase [Agrobacterium vitis S4] Length = 166 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 4/166 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +P P+L + + + + +++ D + M + G+G+ A +G L RLV+ Sbjct: 1 MALK-ILRYPHPLLAKPCQTVTAFDDRLISFADALYNAMRAAPGVGITAAHVGELMRLVI 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R++ ++NP+I++FS + + EG + +P V R IT+RY + Sbjct: 60 LDLPELGGRRD---YVNPEILSFSQNTLDHDEGSVCMPGMTETVTRPRQITLRYQSLDGT 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + A C+QHE+D L+G+ +I LSRLKRD + KK K Sbjct: 117 VREEELQDFAAICMQHEIDQLDGLFWIQRLSRLKRDRLLKKWQKAA 162 >gi|269955166|ref|YP_003324955.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] gi|269303847|gb|ACZ29397.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] Length = 227 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 6 LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + +P+L +RP+ ++ ++ LID+M M +G+GLAA Q+GV R+ V DL Sbjct: 36 ITEIGEPVLHTPARPVTELGTPELARLIDDMFTTMDVAEGVGLAAPQVGVDLRVFVYDLT 95 Query: 65 DHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D A ++ +NP++ D V EGCLS+P A ++R T+R +D Sbjct: 96 DDAGDRHVGAVVNPELELDLDADPEVEDEGCLSVPGAYAPLERPGGATIRGVDQLGGPVQ 155 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLK-----RDMITKKMSKLVQLRD 170 + A G LA C HE HL+G L+ DHL+ + R K+ L Q R+ Sbjct: 156 LEATGYLARCFIHEAQHLDGTLYWDHLTPEQQADALRQRDEKRAEVLAQRRE 207 >gi|218661137|ref|ZP_03517067.1| peptide deformylase [Rhizobium etli IE4771] Length = 184 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L+ V P+ + + L D++L M + G+G+ A IGV R+ V Sbjct: 21 MPVRPILRYPHQGLKTVCAPVTAFDDSLAALADDLLATMRAAPGVGITAAHIGVSLRVTV 80 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +++NP+I S + ++ EG +S+P +V R I RY D + + Sbjct: 81 LELDKTDGVR---LYVNPEITWQSQETMIHTEGSVSMPGATDEVTRPRAIRFRYQDADGK 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 138 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 181 >gi|118340581|gb|ABK80631.1| putative formylmethionine deformylase [uncultured marine Nitrospinaceae bacterium] Length = 169 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 103/166 (62%), Gaps = 5/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M ++++PD L++VS+P+E+ + D+ I+N+ E S G +G+AA Q+G L R+V Sbjct: 1 MALLNILVYPDERLKQVSQPVEEFSEDLKKFIENLEETFRSFPGCVGIAAPQVGRLERIV 60 Query: 60 VIDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++D+ + N +V INP++I F + S+ +EGCLS+PD+ V+RS I ++ ++ Sbjct: 61 LVDISHKSKHVNHGFLVLINPEVI-FYEGNSLGREGCLSVPDFIGKVERSKSINLKALNQ 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + G A +QHE+DHLNG LF+D L +R+ ++K++ Sbjct: 120 KGEKLELQMSGYEARAVQHEIDHLNGKLFLDRLVS-RRNSLSKRIE 164 >gi|67924995|ref|ZP_00518380.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] gi|67853169|gb|EAM48543.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] Length = 173 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 6/154 (3%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +PILR+ ++ ++ + + + L+D +L +G+G+AA Q+ YRL V+ Sbjct: 7 EIAQVGNPILRQQAQLVQDLTDQKLQQLMDTLLTTARDANGVGIAAPQVSQSYRLFVVCS 66 Query: 64 QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + P + INP+II+ +D+ EGCLS+P R V R ITV Y+D Sbjct: 67 HPNPRYPDAPMMDPTIMINPRIISHNDEIVKGWEGCLSVPGVRGLVPRYKVITVEYLDRY 126 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + Q +A QHELDHLNGILFID + + Sbjct: 127 GKLQQQKLKDFVARIFQHELDHLNGILFIDRVDK 160 >gi|42543585|pdb|1RQC|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543586|pdb|1RQC|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543587|pdb|1RQC|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543588|pdb|1RQC|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543589|pdb|1RQC|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543590|pdb|1RQC|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543591|pdb|1RQC|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543592|pdb|1RQC|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543593|pdb|1RQC|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543594|pdb|1RQC|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design Length = 185 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V +PDPILRR S + + ++ ++ ++ Y + GIGL+A Q+ + R++V + L Sbjct: 5 IVKYPDPILRRRSEEVTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNALY 64 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +N +FINP I+ S EGCLS P V+R + +++ Y D N + Sbjct: 65 EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 124 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID +++ + + K+++L++ Sbjct: 125 ILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 167 >gi|225018470|ref|ZP_03707662.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum DSM 5476] gi|224948779|gb|EEG29988.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum DSM 5476] Length = 150 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + L DPILR+ R +E+++ I L+D++ + MY+T +G GLA Q+G+L RLV Sbjct: 1 MAIRNLRFTDDPILRKRCREVEQVDDKIRTLLDDLADTMYNTENGGGLATCQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + +NPKII S EGCLS P+ V R +TV +D N Sbjct: 61 VIDVG-----TGLLKLVNPKIIETSG-LQERLEGCLSFPNQWGKVLRPQKVTVEALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + II + LA CL HE+DHL+G++F+D + Sbjct: 115 EEIIITGEDQLAQCLCHEIDHLDGVVFVDKV 145 >gi|124485018|ref|YP_001029634.1| peptide deformylase [Methanocorpusculum labreanum Z] gi|124362559|gb|ABN06367.1| peptide deformylase [Methanocorpusculum labreanum Z] Length = 162 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 6/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + I+ +L +V+ P++ I +++ ++D M+ ++ G+GLAA Q+G+ R V++ Sbjct: 2 EIQIYGKTVLAQVAEPVDTITPELLAILDEMVPMLKEHRGVGLAAPQVGIGKRFFVMNPG 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R INP+I+ + FS +EGCLS+P V+R ITVRY + + Sbjct: 62 DKVRR-----VINPEIMKTGNAFSEMEEGCLSVPGIHKKVRRPRRITVRYTNEAGELIEE 116 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A HE DHL+GILF+D +S + + MI K++ L +L++ Sbjct: 117 ELKDYPARVFLHEYDHLDGILFVDRISPIAKKMIAKQLEDL-RLKE 161 >gi|147669331|ref|YP_001214149.1| peptide deformylase [Dehalococcoides sp. BAV1] gi|189083069|sp|A5FRA7|DEF_DEHSB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146270279|gb|ABQ17271.1| peptide deformylase [Dehalococcoides sp. BAV1] Length = 167 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+P+LR+ ++ + I+ I LID+M+E M S DG GLAA Q+GV RLVV Sbjct: 1 MAIRRICELPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP+II V EGCLSIP Y ++ R+ +T + +D + + Sbjct: 61 FREPDTKEA---TVLINPEIIKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I G++A L+HE +HL+GIL+IDHL Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESE 149 >gi|51598326|ref|YP_072514.1| peptide deformylase [Borrelia garinii PBi] gi|51572897|gb|AAU06922.1| polypeptide deformylase [Borrelia garinii PBi] Length = 186 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 91/160 (56%), Gaps = 7/160 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 23 EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVREN 82 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+VFINP I S + + Y+EGCLSIP ++ R I V++ D N + I Sbjct: 83 RMAR---PLVFINPSITETSYELNSYKEGCLSIPGVYYNLMRPNGIVVKFYDENGKSFTI 139 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LA +QHE+DHLNGILFID+ + I K+ K Sbjct: 140 ENSDFLARIIQHEMDHLNGILFIDYYE----ERIKNKLLK 175 >gi|73748571|ref|YP_307810.1| peptide deformylase [Dehalococcoides sp. CBDB1] gi|289432597|ref|YP_003462470.1| peptide deformylase [Dehalococcoides sp. GT] gi|123773670|sp|Q3ZXA9|DEF_DEHSC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|73660287|emb|CAI82894.1| polypeptide deformylase [Dehalococcoides sp. CBDB1] gi|288946317|gb|ADC74014.1| peptide deformylase [Dehalococcoides sp. GT] Length = 167 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+P+LR+ ++ + I+ I LID+M+E M S DG GLAA Q+GV RLVV Sbjct: 1 MAIRRICELPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP+I+ V EGCLSIP Y ++ R+ +T + +D + + Sbjct: 61 FREPDTKEA---TVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I G++A L+HE +HL+GIL+IDHL Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESE 149 >gi|148546572|ref|YP_001266674.1| peptide deformylase [Pseudomonas putida F1] gi|148510630|gb|ABQ77490.1| peptide deformylase [Pseudomonas putida F1] Length = 178 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++++ LID+M E M G+GLAA QIG+ +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPEHMFGSAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I S + EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPTSSEIEDGWEGCLSVPGLRGVVPRFKHIGYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D +ADG A +QHE DHL G L+ + R T+ + Sbjct: 121 GIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRIQDFSRFGYTEVL 169 >gi|30021955|ref|NP_833586.1| peptide deformylase [Bacillus cereus ATCC 14579] gi|206971120|ref|ZP_03232071.1| peptide deformylase [Bacillus cereus AH1134] gi|218232337|ref|YP_002368668.1| peptide deformylase [Bacillus cereus B4264] gi|228940955|ref|ZP_04103514.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954144|ref|ZP_04116172.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960083|ref|ZP_04121747.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228973884|ref|ZP_04134460.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980474|ref|ZP_04140784.1| Peptide deformylase [Bacillus thuringiensis Bt407] gi|229047554|ref|ZP_04193144.1| Peptide deformylase [Bacillus cereus AH676] gi|229071365|ref|ZP_04204588.1| Peptide deformylase [Bacillus cereus F65185] gi|229081122|ref|ZP_04213632.1| Peptide deformylase [Bacillus cereus Rock4-2] gi|229111338|ref|ZP_04240891.1| Peptide deformylase [Bacillus cereus Rock1-15] gi|229129143|ref|ZP_04258116.1| Peptide deformylase [Bacillus cereus BDRD-Cer4] gi|229146438|ref|ZP_04274809.1| Peptide deformylase [Bacillus cereus BDRD-ST24] gi|229152066|ref|ZP_04280261.1| Peptide deformylase [Bacillus cereus m1550] gi|229180143|ref|ZP_04307487.1| Peptide deformylase [Bacillus cereus 172560W] gi|229192036|ref|ZP_04319006.1| Peptide deformylase [Bacillus cereus ATCC 10876] gi|296504362|ref|YP_003666062.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|39931054|sp|Q819U0|DEF1_BACCR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|78100858|pdb|1WS0|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus Cereus gi|78100859|pdb|1WS1|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus Cereus gi|29897511|gb|AAP10787.1| Polypeptide deformylase [Bacillus cereus ATCC 14579] gi|206733892|gb|EDZ51063.1| peptide deformylase [Bacillus cereus AH1134] gi|218160294|gb|ACK60286.1| peptide deformylase [Bacillus cereus B4264] gi|228591587|gb|EEK49436.1| Peptide deformylase [Bacillus cereus ATCC 10876] gi|228603352|gb|EEK60829.1| Peptide deformylase [Bacillus cereus 172560W] gi|228631415|gb|EEK88049.1| Peptide deformylase [Bacillus cereus m1550] gi|228637071|gb|EEK93530.1| Peptide deformylase [Bacillus cereus BDRD-ST24] gi|228654380|gb|EEL10245.1| Peptide deformylase [Bacillus cereus BDRD-Cer4] gi|228672114|gb|EEL27405.1| Peptide deformylase [Bacillus cereus Rock1-15] gi|228702166|gb|EEL54642.1| Peptide deformylase [Bacillus cereus Rock4-2] gi|228711819|gb|EEL63771.1| Peptide deformylase [Bacillus cereus F65185] gi|228723801|gb|EEL75156.1| Peptide deformylase [Bacillus cereus AH676] gi|228779294|gb|EEM27551.1| Peptide deformylase [Bacillus thuringiensis Bt407] gi|228785909|gb|EEM33912.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799599|gb|EEM46552.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805464|gb|EEM52055.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818791|gb|EEM64857.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|296325414|gb|ADH08342.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|326941636|gb|AEA17532.1| peptide deformylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 156 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIIKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDVDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|325277883|ref|ZP_08143429.1| peptide deformylase [Pseudomonas sp. TJI-51] gi|324096986|gb|EGB95286.1| peptide deformylase [Pseudomonas sp. TJI-51] Length = 178 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L RV+ P+ + ++ LID+M E M G+GLAA Q+G+ +L Sbjct: 1 MIRDILKMGDERLLRVAAPVPAQLLGSGELQQLIDDMFETMRHVGGVGLAAPQVGIELQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I S + EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPTSTELEDGWEGCLSVPGLRGVVPRFKHICYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D +A+G A +QHE DHL G L+ + + Sbjct: 121 GIDPQGNAIRRFAEGFHARVVQHECDHLIGRLYPSRIQDFTK 162 >gi|318061932|ref|ZP_07980653.1| polypeptide deformylase [Streptomyces sp. SA3_actG] gi|333028589|ref|ZP_08456653.1| putative polypeptide deformylase [Streptomyces sp. Tu6071] gi|332748441|gb|EGJ78882.1| putative polypeptide deformylase [Streptomyces sp. Tu6071] Length = 161 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 70/156 (44%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L +R + L++++ MY+ G+GLAA QIG R+ V D D R++ Sbjct: 2 LTTPARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYDCPDDEDRRHLG 61 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 +NP+++ EGCLS+P A R V + + + G A C Sbjct: 62 HLVNPRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARRRVEGTGFFARC 121 Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LQHE DHL G L++D L + + ++ + R Sbjct: 122 LQHEYDHLEGGLYVDRLDARRHRKVLREAGRTGWGR 157 >gi|313892009|ref|ZP_07825610.1| peptide deformylase [Dialister microaerophilus UPII 345-E] gi|313119652|gb|EFR42843.1| peptide deformylase [Dialister microaerophilus UPII 345-E] Length = 153 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 9/156 (5%) Query: 5 PLVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +V +LR V++P+ + + +LI +M + MY+ +G+GLAA QIG+ R+ V Sbjct: 3 EVVKVGKAVLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFV 62 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D V+INP+ D + EGCLS+ D +V+R A + V+Y D + Sbjct: 63 ADCNDGFD-----VYINPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A GL A C+QHE+DHLNG LFID L + Sbjct: 118 RKQKKATGLFARCVQHEIDHLNGTLFIDKAITLNKR 153 >gi|311748398|ref|ZP_07722183.1| peptide deformylase [Algoriphagus sp. PR1] gi|126576910|gb|EAZ81158.1| peptide deformylase [Algoriphagus sp. PR1] Length = 184 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 6/153 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + +PIL++ + I + + + +I NM M + +G+GLAA QI RL VI Sbjct: 1 MIYPIVAYGNPILKKEADEINE-GTALDEMIQNMFATMDNANGVGLAAPQINEGVRLFVI 59 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D ++ + FINP I+ D ++EGCLSIPD RA++ R +T+ Y D Sbjct: 60 DSNLMLDEEDEEKGIRKAFINPIILDEYGDDYSFEEGCLSIPDVRAEITRPEKLTIEYFD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 N G+ A +QHE DHL GILF+D+ Sbjct: 120 ENWNLHEEEFSGMTARVIQHEYDHLEGILFVDY 152 >gi|251780966|ref|ZP_04823886.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085281|gb|EES51171.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 149 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 59/149 (39%), Positives = 89/149 (59%), Gaps = 7/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + + DPILR+ S+ +E I+ I +++++M E MY+T +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLCDDPILRKKSKEVEVIDDKIRDILNDMAETMYNTENGAGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + INPKII + EGCLS P+ +KR + V+ ++ N Sbjct: 61 VIDM-----WQGLIKLINPKIIKK-EGIQEVIEGCLSSPNVFGKLKRPYKVIVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + + G LA C HE+DHL+GILF D Sbjct: 115 EEIELIGTGDLAKCFCHEIDHLDGILFTD 143 >gi|163790824|ref|ZP_02185249.1| peptide deformylase [Carnobacterium sp. AT7] gi|159873892|gb|EDP67971.1| peptide deformylase [Carnobacterium sp. AT7] Length = 164 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP+L ++ + +I +I+ L+++M E M + DGIG+AA Q+ RL + Sbjct: 1 MSVLPILKYPDPMLITPTKEVTEITDEIVQLLEDMYETMVANDGIGIAAPQVNSNLRLAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ + + INP+I+ + + + EGCLS P+ +KR+ I +RY D N Sbjct: 61 VEIDEESGLYE---MINPRIVHATGET-IDVEGCLSFPEVFGTIKRADTIVLRYYDRNGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + AD L+ QHEL+HL+G LF D + Sbjct: 117 EFEVEADDYLSRAFQHELEHLDGKLFTDKI 146 >gi|227489313|ref|ZP_03919629.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227540902|ref|ZP_03970951.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227090686|gb|EEI25998.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227183162|gb|EEI64134.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 180 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 2/162 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+VI DP+L ++P+E S LID+M E MY+ +G+GLAA Q+G+ V Sbjct: 1 MIMPIVICGDPVLHTPTQPVETPLSP--KLIDDMFETMYAANGVGLAANQVGLSQSFFVF 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + V ++ D EGCLS+P R+++ V D N Sbjct: 59 DCEGVKGVVVNPVLETSEVPETMPDEEEDLEGCLSLPGEFFPTGRASWAKVTGTDENGNP 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + LA C QHE HL G ++ D R + + Sbjct: 119 VEFEGEDFLARCFQHECGHLKGQVYTDVTIGRYRREAKRAIR 160 >gi|310815112|ref|YP_003963076.1| peptide deformylase [Ketogulonicigenium vulgare Y25] gi|308753847|gb|ADO41776.1| peptide deformylase [Ketogulonicigenium vulgare Y25] Length = 163 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 2/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++P P+LR+ + +E I +I L D M+E M + G+GLAAVQ+GV L V+ Sbjct: 1 MHRPFVMWPAPVLRKPAAQVEAITPEITALWDEMVEAMDAMPGVGLAAVQLGVPLALAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D R + NP+I+ S ++E ++P A + R +TVR+++ + Sbjct: 61 DASDA--RGQAIRMANPEILHASVQLREHEEASPNLPGISAVISRPRAVTVRFLNAWGEV 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL G ++ D LS++KRDM +K K Sbjct: 119 EERDLVGLWATSMQHQIDHLAGKMYFDRLSKIKRDMFLRKARKF 162 >gi|294055692|ref|YP_003549350.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221] gi|293615025|gb|ADE55180.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221] Length = 193 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 17/177 (9%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + +PILR V P+ + N ++ L ++M+E MY+ +GIGLAA QI ++ V+D++ Sbjct: 7 KYGEPILREVGAPVTEFNPELKQLAEDMIETMYAEEGIGLAAQQIDKALQICVVDVRPPE 66 Query: 68 HRK-----------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + PM INPK+ D VY+EGCLS PD R V R + Sbjct: 67 GAEVPYNYSFDGRQPPLDLIMPMAIINPKVTIIDDTEDVYEEGCLSFPDVRGRVHRPIGV 126 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + D II ADGLL C+ HE+DHLNG LFID + + ++ KL + Sbjct: 127 RCEFQDTEGNPHIIEADGLLGRCILHEVDHLNGELFIDLMEKRDLRKNETRIKKLKR 183 >gi|288940537|ref|YP_003442777.1| peptide deformylase [Allochromatium vinosum DSM 180] gi|288895909|gb|ADC61745.1| peptide deformylase [Allochromatium vinosum DSM 180] Length = 166 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 94/167 (56%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M ++ PD L++VS P++ + + + I ++ E + G +G+AA Q+ R+V Sbjct: 1 MAILDILKLPDQRLKQVSEPVDSFDQSLRDFIADLEETRLAGPGAVGIAAPQVAHFRRIV 60 Query: 60 VIDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++DL N +V INP+I T + F++ +EGCLS+PDY +V R+ I ++ D Sbjct: 61 ILDLSSRPKTPNHGHLVLINPEI-THWEGFAMGREGCLSVPDYTGNVIRATQIRLKAQDA 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +G A +QHELDHL+G+LF+D + + D+ +K+ K Sbjct: 120 DGVEHQYEMEGFEARAVQHELDHLDGLLFVDRVVSRRTDLYRRKVYK 166 >gi|291543910|emb|CBL17019.1| peptide deformylase [Ruminococcus sp. 18P13] Length = 153 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 6/147 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL + R +E+ + + LID+M E + G+GLAA Q+G+L R+ V Sbjct: 1 MAIRNIVTSEDPILSKPCRTVEEFDDKLGQLIDDMFETLEKAKGLGLAAPQVGILKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + +NP I+ S EGCLS P+ V R +R D + + Sbjct: 61 MDVGD-----GRVEAVNPVILKESG-KQRDVEGCLSCPNQWGYVTRPNKCRLRAYDRHGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 + L C HE DHL+G+LF Sbjct: 115 EFTMDLKELGCRCACHETDHLDGLLFT 141 >gi|227495080|ref|ZP_03925396.1| peptide deformylase [Actinomyces coleocanis DSM 15436] gi|226831532|gb|EEH63915.1| peptide deformylase [Actinomyces coleocanis DSM 15436] Length = 163 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 7/166 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MTYREIRVIGDPILRTPCEWITDIDDKVKGLVEDLLENVDMDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ +NPK++ S +++ EGCLS+P KR+ + V ++ + Sbjct: 61 WNIDGDIGY-----VLNPKLVEASMEEEYQDGDEGCLSVPGLWFPTKRAWYARVEGINLD 115 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I+ + L+A CLQHE DHL G+L++D L R R K++ + Sbjct: 116 GKKIIVEGEELMARCLQHECDHLEGMLYLDRLDRAMRRKAMKEVRE 161 >gi|70731936|ref|YP_261678.1| peptide deformylase [Pseudomonas fluorescens Pf-5] gi|68346235|gb|AAY93841.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5] Length = 179 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ E + ++ LID+M + M S G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAPPVPPEMFDSPELWELIDDMFQTMESVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + INP I S EGCLS+P R V+R I Sbjct: 61 VIFGFEHSERYPEAEAVPQTILINPLITPLSPVLEEGWEGCLSVPGLRGAVQRYQHIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + + A G A +QHE DHL G L+ +S + T+ + Sbjct: 121 GFDPRGEPIVRVASGFHARVVQHECDHLIGRLYPSRISDFSKFGFTEVL 169 >gi|167035061|ref|YP_001670292.1| peptide deformylase [Pseudomonas putida GB-1] gi|166861549|gb|ABY99956.1| peptide deformylase [Pseudomonas putida GB-1] Length = 178 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + +++ LID+M E M G+GLAA QIG+ +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPEHMLGTAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I S + EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D +ADG A +QHE DHL G L+ + + T+ + Sbjct: 121 GIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRIQDFAKFGYTEVL 169 >gi|257899948|ref|ZP_05679601.1| formylmethionine deformylase [Enterococcus faecium Com15] gi|257837860|gb|EEV62934.1| formylmethionine deformylase [Enterococcus faecium Com15] Length = 163 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+R ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ VI Sbjct: 1 MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGKNKRIAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + INP+II + S+ EGCLSIP VKR+ +TVRY D + + Sbjct: 61 EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|69245426|ref|ZP_00603421.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257879837|ref|ZP_05659490.1| formylmethionine deformylase [Enterococcus faecium 1,230,933] gi|257882563|ref|ZP_05662216.1| formylmethionine deformylase [Enterococcus faecium 1,231,502] gi|257886039|ref|ZP_05665692.1| formylmethionine deformylase [Enterococcus faecium 1,231,501] gi|257891678|ref|ZP_05671331.1| formylmethionine deformylase [Enterococcus faecium 1,231,410] gi|257894153|ref|ZP_05673806.1| formylmethionine deformylase [Enterococcus faecium 1,231,408] gi|258614263|ref|ZP_05712033.1| peptide deformylase [Enterococcus faecium DO] gi|260559510|ref|ZP_05831691.1| formylmethionine deformylase [Enterococcus faecium C68] gi|261206661|ref|ZP_05921359.1| formylmethionine deformylase [Enterococcus faecium TC 6] gi|289565022|ref|ZP_06445476.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|293553674|ref|ZP_06674298.1| peptide deformylase [Enterococcus faecium E1039] gi|293563684|ref|ZP_06678125.1| peptide deformylase [Enterococcus faecium E1162] gi|293570096|ref|ZP_06681176.1| peptide deformylase [Enterococcus faecium E1071] gi|294614918|ref|ZP_06694809.1| peptide deformylase [Enterococcus faecium E1636] gi|294618610|ref|ZP_06698149.1| peptide deformylase [Enterococcus faecium E1679] gi|294623686|ref|ZP_06702519.1| peptide deformylase [Enterococcus faecium U0317] gi|314938232|ref|ZP_07845532.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|314943129|ref|ZP_07849927.1| peptide deformylase [Enterococcus faecium TX0133C] gi|314949326|ref|ZP_07852668.1| peptide deformylase [Enterococcus faecium TX0082] gi|314952260|ref|ZP_07855274.1| peptide deformylase [Enterococcus faecium TX0133A] gi|314992116|ref|ZP_07857566.1| peptide deformylase [Enterococcus faecium TX0133B] gi|314996298|ref|ZP_07861354.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|68195808|gb|EAN10244.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257814065|gb|EEV42823.1| formylmethionine deformylase [Enterococcus faecium 1,230,933] gi|257818221|gb|EEV45549.1| formylmethionine deformylase [Enterococcus faecium 1,231,502] gi|257821895|gb|EEV49025.1| formylmethionine deformylase [Enterococcus faecium 1,231,501] gi|257828038|gb|EEV54664.1| formylmethionine deformylase [Enterococcus faecium 1,231,410] gi|257830532|gb|EEV57139.1| formylmethionine deformylase [Enterococcus faecium 1,231,408] gi|260074609|gb|EEW62930.1| formylmethionine deformylase [Enterococcus faecium C68] gi|260079154|gb|EEW66847.1| formylmethionine deformylase [Enterococcus faecium TC 6] gi|289163229|gb|EFD11075.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|291587468|gb|EFF19352.1| peptide deformylase [Enterococcus faecium E1071] gi|291592204|gb|EFF23822.1| peptide deformylase [Enterococcus faecium E1636] gi|291595129|gb|EFF26467.1| peptide deformylase [Enterococcus faecium E1679] gi|291596901|gb|EFF28119.1| peptide deformylase [Enterococcus faecium U0317] gi|291602249|gb|EFF32477.1| peptide deformylase [Enterococcus faecium E1039] gi|291604368|gb|EFF33861.1| peptide deformylase [Enterococcus faecium E1162] gi|313589542|gb|EFR68387.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|313593330|gb|EFR72175.1| peptide deformylase [Enterococcus faecium TX0133B] gi|313595602|gb|EFR74447.1| peptide deformylase [Enterococcus faecium TX0133A] gi|313598137|gb|EFR76982.1| peptide deformylase [Enterococcus faecium TX0133C] gi|313642428|gb|EFS07008.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|313644275|gb|EFS08855.1| peptide deformylase [Enterococcus faecium TX0082] Length = 163 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+R ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ VI Sbjct: 1 MRYPILIHPNDKLKRTAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + INP+II + S+ EGCLSIP VKR+ +TVRY D + + Sbjct: 61 EVDE----GEKFELINPEIIEAKGE-SLDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|328957297|ref|YP_004374683.1| peptide deformylase [Carnobacterium sp. 17-4] gi|328673621|gb|AEB29667.1| peptide deformylase [Carnobacterium sp. 17-4] Length = 176 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 5/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +P+ +L ++ +E+I +I+ L+++M + M + DGIG+AA Q+ RL + Sbjct: 13 MSVLPILTYPNALLTTPTKEVEEITDEIIQLLEDMHDTMIANDGIGIAAPQVSSNLRLAL 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ + + INP+I+ + + + EGCLS P+ +KR+ I +R+ D N Sbjct: 73 VEIDEESG---LFEMINPQIVQSTGET-IDVEGCLSFPEVYGTIKRADTIVLRFYDRNGD 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH-LSRLKRDMITKKMSK 164 + AD LA QHEL+HL+G LF D + ++K + + M Sbjct: 129 EFEVEADDYLARAFQHELEHLDGKLFTDKIIQKIKPEDLESYMEA 173 >gi|306836963|ref|ZP_07469913.1| peptide deformylase [Corynebacterium accolens ATCC 49726] gi|304567146|gb|EFM42761.1| peptide deformylase [Corynebacterium accolens ATCC 49726] Length = 207 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P+VI +P+L + + P+E+ + ++ LI +M E M G+GLAA Q+G+ R Sbjct: 1 MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60 Query: 58 LVVIDLQDHAHRK-----------------NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 L V D NP++ + T D EGCLS+P Sbjct: 61 LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R+ + V D + + G A CLQHE HL+G ++ D L + K Sbjct: 121 GFPTGRADWARVTGKDEHGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKRQAKK 180 Query: 161 KMSK 164 + + Sbjct: 181 AIKR 184 >gi|187778789|ref|ZP_02995262.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC 15579] gi|187772414|gb|EDU36216.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC 15579] Length = 178 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I+++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAVREILQVGDKTLKRVSKKVECIDDEIKGIIEDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+ +R+ P++ INPK + QEGCLS P Y V R + + ++ + Sbjct: 83 IDLR---NRQEPIILINPKFLKRIG-KEESQEGCLSYPGYEGIVIRPRRVVIIGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|126726108|ref|ZP_01741950.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] gi|126705312|gb|EBA04403.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] Length = 165 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 3/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P + +PD LR + + I+ +I + D+M++ M + G+GLAA QIGV RL V+ Sbjct: 1 MIRPTIPWPDQCLRSKANTVGDISDEIRAIWDDMIDTMEAMPGVGLAAPQIGVSLRLCVV 60 Query: 62 DLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D R + +P + D+ ++E ++P A + R A +TV Y D + Sbjct: 61 DASD--ERGQTIRMADPDFVGAQGDELRDHEEASPNLPGVSAKITRPAKVTVEYTDDKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +GL AT +QH+LDHLNG ++ D+LS+ RDM+ ++ K Sbjct: 119 RVRKTLEGLWATSVQHQLDHLNGRMYFDNLSKTNRDMLLRRAKK 162 >gi|206603587|gb|EDZ40067.1| Polypeptide deformylase [Leptospirillum sp. Group II '5-way CG'] Length = 177 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 3/165 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ + DP L S + +I+ +I +L+ M E++Y GIG+AA Q+G R V D+ Sbjct: 6 ILSYGDPRLLVKSTEVTRIDQEISDLVRGMFELLYRVPGIGIAAPQVGCNMRFFVFDMNR 65 Query: 66 HA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 A + P+ INP I + + +EGCLS P V+R+ I ++ +D + + Sbjct: 66 RADPGSRTPVTIINPVI-SAKEGSITQEEGCLSFPGIFVPVERALRIEIKGVDMEGKDLV 124 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +GL A +QHE+DHL G+L +H++R + + K++ + ++ Sbjct: 125 LEGEGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEIRAIEKI 169 >gi|194477103|ref|YP_002049282.1| peptide deformylase [Paulinella chromatophora] gi|171192110|gb|ACB43072.1| peptide deformylase [Paulinella chromatophora] Length = 201 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 97/166 (58%), Gaps = 3/166 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + LR ++ I +IN ++ ++ +ML MY+ GIGLAA Q+G+ +L+VID Sbjct: 30 ILEIHKLGSDKLRTSAKRIMRINEEVRDIARDMLRSMYAAKGIGLAAPQVGINKQLIVID 89 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + P++ INP+II + + Y+EGCLSIP DV R + I V + D + Sbjct: 90 IDLENSTTPPIILINPEIIASNASLNTYEEGCLSIPGVYLDVVRPSIIEVSFRDEQDFPR 149 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL---SRLKRDMITKKMSKL 165 + DGLLA C+QHE+DHL G+LF+D + SRL+ +++ + K+ Sbjct: 150 CLKTDGLLARCIQHEMDHLKGVLFVDRVKDESRLEEELVKNNLRKV 195 >gi|326790873|ref|YP_004308694.1| peptide deformylase [Clostridium lentocellum DSM 5427] gi|326541637|gb|ADZ83496.1| peptide deformylase [Clostridium lentocellum DSM 5427] Length = 149 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 9/151 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +LR++S+P++ + + L+D+M E MY +G+G+AA Q+G+L R + Sbjct: 1 MAIR---TEKEEVLRKISKPVKSFDESLWTLLDDMKETMYLAEGVGIAAPQVGLLKRAFI 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P+ F+NP+I+ + + +EGCLS+P V+R ++ +R D N Sbjct: 58 VDIGE-----GPVEFVNPEILAVEGE-QLGEEGCLSVPKRYGTVRRPNYVKMRAQDRNGN 111 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I +A + HE DHL G LF+D + Sbjct: 112 VFEIEGKEFMARAMLHEFDHLEGKLFVDLVE 142 >gi|310829317|ref|YP_003961674.1| peptide deformylase 1 [Eubacterium limosum KIST612] gi|308741051|gb|ADO38711.1| peptide deformylase 1 [Eubacterium limosum KIST612] Length = 151 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLV 59 M + + FPD IL + RP+E I+ + LI +M E MY G LAA Q+GVL R+V Sbjct: 1 MAIRQIRKFPDDILHKKCRPVETIDKRTLELIKDMTETMYQLPNCGGLAANQVGVLKRVV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + ++ +NPKII + V EGC+S PD VKR + V Y Sbjct: 61 VIDVGEGLYQ-----LVNPKIIEAEGERIVV-EGCMSSPDVWGKVKRPERVVVEYTTPEG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + ADGLLA C HELDHL+GI F D + Sbjct: 115 EVLQKEADGLLAKCFCHELDHLDGIFFTDKV 145 >gi|323487022|ref|ZP_08092334.1| peptide deformylase [Clostridium symbiosum WAL-14163] gi|323692064|ref|ZP_08106311.1| peptide deformylase [Clostridium symbiosum WAL-14673] gi|323399670|gb|EGA92056.1| peptide deformylase [Clostridium symbiosum WAL-14163] gi|323503864|gb|EGB19679.1| peptide deformylase [Clostridium symbiosum WAL-14673] Length = 159 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 5/147 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L + +P++++ LI++M E MY +G+GLAA Q+G+ ++VV Sbjct: 1 MAIRSIRTMGDEVLTKECKPVKEMTEHTAELIEDMFETMYEANGVGLAAPQVGIRKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D N V INP+I+ EGCLS+P V R + V+ ++ + Sbjct: 61 IDVDD----GNQYVLINPEIVETEGS-QTGSEGCLSVPGKTGVVTRPEKVKVKALNEKME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 + +GLLA + HE DHL G L++ Sbjct: 116 EFELEGEGLLARAICHECDHLKGQLYV 142 >gi|209549461|ref|YP_002281378.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535217|gb|ACI55152.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 164 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ +S + L D++L M + G+G+ A IGV RL V Sbjct: 1 MPIRPILRYPHPGLKTVCAPVTVFDSSLAALADDLLATMRAAPGVGITAAHIGVFTRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +++NP+I FS + + EG +S+P +V R I RY D Sbjct: 61 LELDKTDGVR---LYVNPEITWFSKETMSHAEGSVSMPGATDEVTRPRSIRFRYQDAEGG 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LA C+QHE+D LNGI ++ LSRLKRD + KK K Sbjct: 118 MHEDVADDFLAICIQHEVDQLNGIFWLQRLSRLKRDRLVKKWEK 161 >gi|104782988|ref|YP_609486.1| peptide deformylase [Pseudomonas entomophila L48] gi|95111975|emb|CAK16702.1| peptide deformylase 2 [Pseudomonas entomophila L48] Length = 178 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++++ LID+M E M G+GLAA QIG+ +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPEHMLGSAELRQLIDDMFETMAHVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I S + EGCLS+P R V R I+ Sbjct: 61 VIFGFERSERYPDAEAVPRTILLNPVITPMSTEVEDGWEGCLSVPGLRGVVPRYKHISYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D + +ADG A +QHE DHL G L+ + + T+ + Sbjct: 121 GVDPDGNPIDRFADGFHARVVQHECDHLIGRLYPSRIQDFSKFGYTEVL 169 >gi|118475317|ref|YP_892810.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40] gi|118414543|gb|ABK82963.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40] Length = 172 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 94/157 (59%), Gaps = 4/157 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PD L S + K ++++ +D+M + M + +GIGLAA+Q+G R+ +I Sbjct: 1 MILDVITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFII 60 Query: 62 DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L + + + + INPK I+ + VYQEGCLS+P Y DVKR+ I +++ D Sbjct: 61 NLINEDEVQDKNDLLEIINPKFISKDGEI-VYQEGCLSVPGYYEDVKRAKDIKIQFQDRF 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + ADGLL+ +QHE DHL+G LFI+ + KR Sbjct: 120 GNLKELEADGLLSVAIQHENDHLDGHLFIEKIGFNKR 156 >gi|297560923|ref|YP_003679897.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845371|gb|ADH67391.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L R + ++++ LID+M MY+ +G+GLA Q+GV R+ Sbjct: 31 VRRITVTGEEVLHRRGVDVAPQMWGSAELAGLIDDMFVTMYAAEGVGLAGSQVGVDLRVF 90 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 V D D ++ +NP + D V EGCLS+P AD+ R+ TVR +D Sbjct: 91 VYDCPDDDGVRHVGHVVNPVLDERDPDDAVVVESEGCLSVPGPHADLGRAEHATVRGVDR 150 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + ++ G A CLQHE DH G L++D LS +R + KKM+++ Sbjct: 151 DGNPVVVSGSGYFARCLQHETDHTLGRLYVDRLSARERKRVLKKMNEMA 199 >gi|15895739|ref|NP_349088.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC 824] gi|23396569|sp|Q97G95|DEF2_CLOAB RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|15025493|gb|AAK80428.1|AE007746_15 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC 824] gi|325509889|gb|ADZ21525.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum EA 2018] Length = 150 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 90/153 (58%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + + D ILR+ SRP+E ++ I ++D+ML+ + +T +G +AA Q+G+L +LV Sbjct: 1 MALRQIRLSEDEILRKKSRPVEVVDDKIRQILDDMLDTLQNTENGAAIAAPQVGILKQLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VI + + +NPKI+ + V EGCLSIP+ +KR +TV ++ N Sbjct: 61 VIATGEDIIK-----LVNPKIVKKEGEQEVV-EGCLSIPNVYGKLKRPKKVTVEALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + +G LA C HE+DHL+GILF D ++ Sbjct: 115 EKITLTGEGFLAKCFCHEIDHLDGILFTDLVTE 147 >gi|308051095|ref|YP_003914661.1| peptide deformylase [Ferrimonas balearica DSM 9799] gi|307633285|gb|ADN77587.1| peptide deformylase [Ferrimonas balearica DSM 9799] Length = 175 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 6/157 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + +PILR+ +RP+ + +I L ML M + G+G+AA Q+ RL+ Sbjct: 1 MTPMAIAQLGEPILRQRARPVSDATAAEIQTLWQRMLVTMEAAGGVGIAAPQVFEPLRLM 60 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +I + +A + P+V INP+I+ S + + EGCLS+P R V+R + VRY Sbjct: 61 IIASRPNARYPDAPQMDPVVLINPEILNTSGELVSFVEGCLSVPGIRGTVRRPDNVEVRY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +D Q Q + G A HE DHL G F+D + Sbjct: 121 LDTQGQPQQLSLSGFPARIFLHEFDHLEGRTFLDQVD 157 >gi|225849674|ref|YP_002729908.1| peptide deformylase [Persephonella marina EX-H1] gi|225646510|gb|ACO04696.1| peptide deformylase [Persephonella marina EX-H1] Length = 169 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 96/170 (56%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M K ++ +PD L++VS+P+E D + ++ +L M ++ G+G+AA Q+ + + Sbjct: 1 MEKFEILTYPDERLKKVSKPVEDFGRDFKDFVERLLYTMRNSPAGVGIAAPQVNRHIQTI 60 Query: 60 VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++D ++ H+ N M+ NP+II + + + +EGCLS+PD+ +VKR +I V Sbjct: 61 IVDASEYKHKYNKTNHGLMILSNPRIIAYDGEIVI-REGCLSVPDFTGNVKRHYWIKVEA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + +G A +QHE+DHL G LF+D + K D+ +K+ K Sbjct: 120 EDIDGNTITFDTEGFEAVVIQHEMDHLKGKLFLDRVVSPK-DIFKRKVYK 168 >gi|313497652|gb|ADR59018.1| Def_2 [Pseudomonas putida BIRD-1] Length = 178 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++++ LID+M E M G+GLAA Q+G+ +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I S + EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D +ADG A +QHE DHL G L+ + R T+ + Sbjct: 121 GIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRIQDFARFGYTEVL 169 >gi|329120996|ref|ZP_08249627.1| peptide deformylase [Dialister micraerophilus DSM 19965] gi|327471158|gb|EGF16612.1| peptide deformylase [Dialister micraerophilus DSM 19965] Length = 153 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 9/156 (5%) Query: 5 PLVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +V +LR V++P+ + + +LI +M + MY+ +G+GLAA QIG+ R+ V Sbjct: 3 EVVKVGKAVLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFV 62 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + V+INP+ D + EGCLS+ D +V+R A + V+Y D + Sbjct: 63 ADCNEGFD-----VYINPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A GL A C+QHE+DHLNG LFID L + Sbjct: 118 RKQKKATGLFARCVQHEIDHLNGTLFIDKAITLNKR 153 >gi|282854675|ref|ZP_06264010.1| peptide deformylase [Propionibacterium acnes J139] gi|282582257|gb|EFB87639.1| peptide deformylase [Propionibacterium acnes J139] gi|314966213|gb|EFT10312.1| peptide deformylase [Propionibacterium acnes HL082PA2] gi|314981979|gb|EFT26072.1| peptide deformylase [Propionibacterium acnes HL110PA3] gi|315090890|gb|EFT62866.1| peptide deformylase [Propionibacterium acnes HL110PA4] gi|315095103|gb|EFT67079.1| peptide deformylase [Propionibacterium acnes HL060PA1] gi|315104332|gb|EFT76308.1| peptide deformylase [Propionibacterium acnes HL050PA2] gi|327328118|gb|EGE69887.1| peptide deformylase [Propionibacterium acnes HL103PA1] Length = 200 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 3/168 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + + + +L +RP+ + + D+ L+ +M M + DG+GLAA Q+GV L V Sbjct: 22 RRVTRWGESVLHAQTRPVTEFDEDLTTLVRDMFATMNAADGVGLAATQVGVDLSLFVYIC 81 Query: 64 QDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + F NP + EGCLS P + R T D Sbjct: 82 PDANNVVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGN 141 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A CLQHE DH NGI+F D LS+ R + ++ + L Sbjct: 142 DITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189 >gi|256424099|ref|YP_003124752.1| peptide deformylase [Chitinophaga pinensis DSM 2588] gi|256039007|gb|ACU62551.1| peptide deformylase [Chitinophaga pinensis DSM 2588] Length = 191 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 96/179 (53%), Gaps = 14/179 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + PILR+ P++K + LI+NM + + +G GLA QI + R+ +ID + Sbjct: 2 PIVPYGSPILRKQCSPVDKNYDGLDKLIENMWHTLENANGSGLATPQINLPIRIFIIDSE 61 Query: 65 DHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + NP VFINP+I +S+ EGCLSIP A V R + Sbjct: 62 TSFNTMNPEERKVHFEGDNGIREVFINPEITEYSEAKCDDLEGCLSIPGVAAIVSRPYAV 121 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Y D N Q +GL A +QHE DH+ G L++D+LS LK ++TKK++++ + R Sbjct: 122 KIEYYDRNFQKHTKAFNGLTARIIQHEFDHIEGRLYLDYLSSLKMKLLTKKLAQIKKGR 180 >gi|86604999|ref|YP_473762.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] gi|86553541|gb|ABC98499.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] Length = 175 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + L DPIL +V+ P+ + + NLI+ ML + G+GLAA Q+G +++ Sbjct: 1 MTLR-LRQLGDPILTQVAEPVAEFGTPALQNLIEEMLATLKEAQGVGLAAPQVGFPLQVI 59 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ + + + P+V +NP+ + S++ + EGCLS+P+ R V RS + V Y Sbjct: 60 IVASRPNPRYPDAPQMEPLVMVNPRPLACSEEQVLGWEGCLSVPNCRGLVARSREVEVEY 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 Q + A QHE DHL G LF+D Sbjct: 120 HTPEGSRQRVVWRDFPARIFQHEYDHLRGRLFLDR 154 >gi|296116575|ref|ZP_06835185.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] gi|295976787|gb|EFG83555.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] Length = 178 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 8/177 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+L R + + DI++L+ +M+E M G+GLAA Q+ R+ Sbjct: 1 MTLLKIARMGHPVLLRRADAVTDPTAPDIVHLVADMIETMEDAGGVGLAAPQVHRSCRVF 60 Query: 60 VIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 V + D P V INP + ++ + EGCLSIP R V R + Sbjct: 61 VYRVPDTRSSGAPDDQPCGPQVLINPHLTPIGEETVLRLEGCLSIPGLRGWVPRHTRVAY 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + A G LA +QHE DHLNGIL+ ++ L + +M++ + + Sbjct: 121 HGYDAQGRQVKGTASGFLANVMQHEYDHLNGILYPMRMNDLAKMGFDTEMARYGEEQ 177 >gi|75762657|ref|ZP_00742499.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489856|gb|EAO53230.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 156 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MPVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDVDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|194014710|ref|ZP_03053327.1| peptide deformylase [Bacillus pumilus ATCC 7061] gi|194013736|gb|EDW23301.1| peptide deformylase [Bacillus pumilus ATCC 7061] Length = 160 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+V+ P +L + + P++ + + L+D+M + M DG+GLAA QIG+ R+ V Sbjct: 1 MAVKPIVMHPAEVLEQKAEPVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + R + +NP+++ EGCLS P V+R +++ V+ D + Sbjct: 61 VDIGEEPGRID---LVNPEVLEIKGS-QTDIEGCLSFPSLYGTVERPSYVKVKAFDKKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I A+G LA L HE+DHL+GILF + + + +M Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFTSKIIQTYTEKELAEME 159 >gi|303233239|ref|ZP_07319911.1| peptide deformylase [Atopobium vaginae PB189-T1-4] gi|302480629|gb|EFL43717.1| peptide deformylase [Atopobium vaginae PB189-T1-4] Length = 183 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 70/164 (42%), Positives = 91/164 (55%), Gaps = 2/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 K +V FP PIL+ V P++ I SDI L +ML+VMY+TDG GLAA QIG RLVVI Sbjct: 6 AYKEMVCFPSPILQTVCTPVKHITSDIKELAHHMLDVMYATDGCGLAAPQIGETIRLVVI 65 Query: 62 DLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ KNP V +NP I+T + EGCLS P V R + + + + + Sbjct: 66 DVDWSSTSAKNPYVLVNPTIVTADGKDRLMPEGCLSYPGIMVGVTRPSHVICEAYNLDGE 125 Query: 121 HQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 A G L+A CLQHE DH+NGI DHL L++ K+ Sbjct: 126 CMRYEATGNLMAACLQHECDHINGITIPDHLPPLEKIEKLKEYK 169 >gi|327194673|gb|EGE61521.1| peptide deformylase protein [Rhizobium etli CNPAF512] Length = 164 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ ++ + L D++L M + G+G+ A IGV R++V Sbjct: 1 MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +++NP I S + ++ EG +S+P DV R I RY D + + Sbjct: 61 LELGRADGVR---LYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161 >gi|254436758|ref|ZP_05050252.1| peptide deformylase [Octadecabacter antarcticus 307] gi|198252204|gb|EDY76518.1| peptide deformylase [Octadecabacter antarcticus 307] Length = 165 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +P ILR + + +I DI L D M++ M + G+GLAA Q+GV RL V Sbjct: 1 MPRRQFIPWPAKILRTPAAEVPEITDDICALWDEMIDAMDAMPGVGLAAPQLGVSLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R + NP I+ S + +++E ++ A ++R +TVR+M+ Sbjct: 61 VDASDK--RGQAIRMANPIILHASHELRLHEEASPNLVGMSASLERPRAVTVRFMNEAGM 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL+G ++ D LSR KRDM+ KK KL Sbjct: 119 YDRQDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163 >gi|15828039|ref|NP_302302.1| peptide deformylase [Mycobacterium leprae TN] gi|221230516|ref|YP_002503932.1| peptide deformylase [Mycobacterium leprae Br4923] gi|17432941|sp|Q9CBI2|DEF_MYCLE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767596|sp|B8ZSF6|DEF_MYCLB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|13093592|emb|CAC30884.1| polypeptide deformylase [Mycobacterium leprae] gi|219933623|emb|CAR72026.1| polypeptide deformylase [Mycobacterium leprae Br4923] Length = 197 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 12/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P++ ++ LI M + M + G+GLAA QIG Sbjct: 1 MAIAPIRIVGDPVLHTPTAPVQVAADGSLPANLNGLISTMYDTMDAAHGVGLAANQIGYG 60 Query: 56 YRLVVIDLQDHAHR--KNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D + + + V INP +I D EGCLS+P + R+ Sbjct: 61 LRVFVYDCAEDCRQTARRRGVVINPILETSEIPETMPDPDTDNEGCLSVPGESFPIGRAQ 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + V +D + GL A LQHE HL+G L++D+L + + Sbjct: 121 WARVTGLDADGNPVTTEGTGLFARMLQHETGHLDGFLYLDYLIGRHARSAKRAIK 175 >gi|317106741|dbj|BAJ53237.1| JHL06P13.18 [Jatropha curcas] Length = 274 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 17/172 (9%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L +R ++ + I +ID+M++ M G+GLAA QIGV R++V+ Sbjct: 87 DIVKAGDPVLHEPAREVDPEEIGSERIQKIIDDMIKAMRMAPGVGLAAPQIGVPLRIIVL 146 Query: 62 DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + R P +V +NPK+ S+ + + EGCLS+ +RA V+R Sbjct: 147 EDTKEYIRYAPKEETKAQDRRPFDLLVILNPKLEKKSNRTAFFFEGCLSVDGFRAVVERY 206 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + V + Q + A G A LQHE DHL+G L++D + I Sbjct: 207 LDVEVTGLSRYGQPIKVNASGWQARILQHECDHLDGTLYVDKMVPRTFRTIE 258 >gi|187777638|ref|ZP_02994111.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC 15579] gi|187774566|gb|EDU38368.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC 15579] Length = 150 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + IF D ILR+ S+ +E ++ I ++++M + MY+T +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRIFDDEILRKKSKVVEVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ +KR +T++ ++ Sbjct: 61 VIDMG-----QGLIKLVNPKIINKEGTQEVI-EGCLSIPNTWGKLKRPKKVTIQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|330957627|gb|EGH57887.1| peptide deformylase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 179 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIGV +L Sbjct: 1 MIRNILKMGDERLLRIAPPVPTEMFGSSELNTLIADMFETMHSVSGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I S + EGCLS+P R V R I Sbjct: 61 VIFGFERNERYPQAEAVPQTILLNPVITPLSPELEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPEGKPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|84514539|ref|ZP_01001903.1| peptide deformylase [Loktanella vestfoldensis SKA53] gi|84511590|gb|EAQ08043.1| peptide deformylase [Loktanella vestfoldensis SKA53] Length = 169 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + V +P P+LR + P+ I +I L D M+ M + G+GLAA Q+GV L V Sbjct: 1 MTHRAYVQWPHPVLRTPAAPVAAITDEIRALWDEMIVAMDTMPGVGLAAPQLGVGLALAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+I+ S +F ++EG ++P A + R +TVR+++ + + Sbjct: 61 VDASTM--RGQAVRMANPEILHSSVEFRDHEEGSPNLPGVWARISRPRAVTVRFLNADGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + GL AT +QH++DHL G +FID +++++RDM+ Sbjct: 119 VEERDFVGLWATSVQHQIDHLAGRMFIDRMTKVRRDML 156 >gi|257871146|ref|ZP_05650799.1| formylmethionine deformylase [Enterococcus gallinarum EG2] gi|257805310|gb|EEV34132.1| formylmethionine deformylase [Enterococcus gallinarum EG2] Length = 163 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LRR +P+ I +++ L+++M E M + DG+G+AA QIG ++ ++ Sbjct: 1 MRYPIIIHPDDQLRRKPKPVSMITDELVQLLEDMYETMVAHDGVGIAAPQIGKNLQVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + INP+II S + SV EGCLSIP VKR+ ITVRY D + Sbjct: 61 EVDEEDR----FELINPEIIESSGE-SVDVEGCLSIPHTYGTVKRADEITVRYFDREGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKL 165 + A G LA +QHE+DHLNG+LFID + ++ + + M + Sbjct: 116 MEVQAFGYLARAIQHEIDHLNGVLFIDKMIDKIPESELEQYMEEH 160 >gi|197302409|ref|ZP_03167465.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC 29176] gi|197298530|gb|EDY33074.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC 29176] Length = 159 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D IL + + ++K+ LI +ML+ MY G+GLAA Q+G+L ++VV Sbjct: 1 MAIREVRKIGDEILGKQCKEVKKMTIRTKILIGDMLDTMYEKMGVGLAAPQVGILKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+II S + +EGCLS+P V R ++ VR ++ + Sbjct: 61 IDVGE-----GPIVLINPEIIETSGE-QTGEEGCLSVPGKWGIVTRPNYVKVRALNEEME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I +GLLA HE+DHL+G L++D + Sbjct: 115 EFEIEGEGLLARAFCHEIDHLSGHLYVDKVED 146 >gi|255746035|ref|ZP_05419982.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262162126|ref|ZP_06031141.1| peptide deformylase [Vibrio cholerae INDRE 91/1] gi|255735789|gb|EET91187.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262028201|gb|EEY46859.1| peptide deformylase [Vibrio cholerae INDRE 91/1] gi|327485372|gb|AEA79778.1| Peptide deformylase [Vibrio cholerae LMA3894-4] Length = 145 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 67/145 (46%), Positives = 96/145 (66%), Gaps = 4/145 (2%) Query: 26 SDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 + + LID++L+ +Y+T +GIGLAA Q+G +VVIDL D +R P+V INPK+++ S Sbjct: 2 ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLSD--NRDQPLVLINPKVVSGS 59 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + + QEGCLS+PDY ADV+R + V +D + I LA +QHE+DHL+G Sbjct: 60 N-KEMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGN 118 Query: 145 LFIDHLSRLKRDMITKKMSKLVQLR 169 LFID+LS LK+ M KK+ K V+ R Sbjct: 119 LFIDYLSPLKQQMAMKKVKKHVKNR 143 >gi|190891919|ref|YP_001978461.1| peptide deformylase [Rhizobium etli CIAT 652] gi|190697198|gb|ACE91283.1| peptide deformylase protein [Rhizobium etli CIAT 652] Length = 164 Score = 169 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ ++ + L D++L M + G+G+ A IGV R++V Sbjct: 1 MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +++NP I S + ++ EG +S+P DV R I RY D + + Sbjct: 61 LELDRADGVR---LYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161 >gi|289803413|ref|ZP_06534042.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 135 Score = 169 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 56/138 (40%), Positives = 93/138 (67%), Gaps = 3/138 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGN 117 Query: 121 HQIIYADGLLATCLQHEL 138 + ADGLLA C+QHE+ Sbjct: 118 PFELEADGLLAICIQHEM 135 >gi|217967822|ref|YP_002353328.1| peptide deformylase [Dictyoglomus turgidum DSM 6724] gi|254767580|sp|B8E0X7|DEF_DICTD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|217336921|gb|ACK42714.1| peptide deformylase [Dictyoglomus turgidum DSM 6724] Length = 153 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 6/148 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + DPIL+ ++ +EKI+ + NL+ +M+E M ++G+GLAA Q+G R++V+ Sbjct: 1 MIMEIRKIGDPILKIKAKKVEKIDEKVKNLVRDMIETMKFSNGVGLAAPQVGESLRIIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ NP+ FINP+I+ + Y EGCLS+P +KR+ I + D + Sbjct: 61 DYEE-----NPIAFINPEILEMDGEVLDY-EGCLSVPGVEVPIKRAERIIFKAQDLQGRT 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDH 149 + A GLLA +QHE+DHL GIL +D Sbjct: 115 KRYKAKGLLARVIQHEVDHLEGILILDR 142 >gi|258542784|ref|YP_003188217.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256633862|dbj|BAH99837.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256636921|dbj|BAI02890.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-03] gi|256639974|dbj|BAI05936.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-07] gi|256643030|dbj|BAI08985.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-22] gi|256646085|dbj|BAI12033.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-26] gi|256649138|dbj|BAI15079.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-32] gi|256652125|dbj|BAI18059.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655182|dbj|BAI21109.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-12] Length = 174 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+LR+ ++ + + DI LI +M E + + G+GLAA Q+ V RL Sbjct: 1 MAVLAIARMGHPVLRQPAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLF 60 Query: 60 VIDLQ--DHAHRKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + +P + INP + D+ + EGCLS+PD R +V R I Sbjct: 61 LYSVPLARSEGEDDPSLPVQALINPVLKPVDDEKLLRTEGCLSLPDLRGEVPRYKRIWYA 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + Q A G A +QHE+DHL+GIL+ ++ + + K++++ Sbjct: 121 GFDPHGQKVEGMATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKELTR 171 >gi|16078635|ref|NP_389454.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221309447|ref|ZP_03591294.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221313772|ref|ZP_03595577.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318696|ref|ZP_03599990.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322967|ref|ZP_03604261.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY] gi|2499922|sp|P94462|DEF1_BACSU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|1772499|emb|CAA71349.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|2337801|emb|CAA74262.1| putative Def protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633944|emb|CAB13445.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str. 168] Length = 160 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ D R + +NP+I+ S + EGCLS P+ DV R+ ++ VR + + Sbjct: 61 VEIGDDRGRID---LVNPEILEKSGE-QTGIEGCLSFPNVYGDVTRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|293572654|ref|ZP_06683622.1| peptide deformylase [Enterococcus faecium E980] gi|291607240|gb|EFF36594.1| peptide deformylase [Enterococcus faecium E980] Length = 163 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 59/149 (39%), Positives = 92/149 (61%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+R ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ +I Sbjct: 1 MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIALI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + INP+II + S+ EGCLSIP VKR+ +TVRY D + + Sbjct: 61 EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|225848346|ref|YP_002728509.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644275|gb|ACN99325.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] Length = 168 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M K P++ +PD L++ S + + ++ + MY++ G +G+AA Q+ R + Sbjct: 1 MEKLPILQYPDERLKKKSIEVVDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNNHIRTI 60 Query: 60 VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++D H+ N + V NPKII + + +++EGC+S+PDY +VKR +I V Sbjct: 61 IVDTSKSTHKTNKVSHGLMVLSNPKII-YGEGEIIFREGCMSVPDYTGNVKRFYYIKVEA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D N + +G A +QHE+DHL+G +FI+ + K D+ +K+ K Sbjct: 120 LDENGKLITFDTEGFEAVVIQHEIDHLDGKVFIEKVVSPK-DIFKRKVYK 168 >gi|258489222|gb|ACV72595.1| peptide deformylase [Pseudomonas syringae pv. cerasicola] Length = 169 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 12/163 (7%) Query: 10 PD-PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 PD P+LR+VS ++K N ++ L+D+M E M +G+GLAA QIGV R++VI+ + Sbjct: 8 PDAPLLRKVSAQVDKFSNDELRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIEFSGNE 67 Query: 68 HR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R P V INP I + + +EGC S+P V R A I D + + Sbjct: 68 ERAPGESPVPPTVLINPVITS-GVGRTEGREGCFSVPGKIGIVPRYATIEYTAQDMDGLN 126 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL---KRDMITKK 161 A+G A +QHE+DHLNGIL+ID S + +R+ + K Sbjct: 127 VRGKAEGFHARIIQHEVDHLNGILYIDIASEVSLYQREPVASK 169 >gi|157692252|ref|YP_001486714.1| peptide deformylase [Bacillus pumilus SAFR-032] gi|157681010|gb|ABV62154.1| formylmethionine deformylase [Bacillus pumilus SAFR-032] Length = 160 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+VI P +L + + ++ + + L+D+M + M DG+GLAA QIG+ R+ V Sbjct: 1 MAVKPIVIHPAEVLEQKAESVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + +NP+++ EGCLS P V+R +++ V+ D + Sbjct: 61 VDIGEESGRID---LVNPEVLEVKGS-QTDIEGCLSFPSLYGTVERPSYVKVKAFDKKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I A+G LA L HE+DHL+GILF + + + +M Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFTSKIIQTYTEKELAEME 159 >gi|227552688|ref|ZP_03982737.1| peptide deformylase [Enterococcus faecium TX1330] gi|257888656|ref|ZP_05668309.1| formylmethionine deformylase [Enterococcus faecium 1,141,733] gi|257897388|ref|ZP_05677041.1| formylmethionine deformylase [Enterococcus faecium Com12] gi|293378852|ref|ZP_06625007.1| peptide deformylase [Enterococcus faecium PC4.1] gi|227178175|gb|EEI59147.1| peptide deformylase [Enterococcus faecium TX1330] gi|257824710|gb|EEV51642.1| formylmethionine deformylase [Enterococcus faecium 1,141,733] gi|257833953|gb|EEV60374.1| formylmethionine deformylase [Enterococcus faecium Com12] gi|292642393|gb|EFF60548.1| peptide deformylase [Enterococcus faecium PC4.1] Length = 163 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 59/149 (39%), Positives = 91/149 (61%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+ ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ VI Sbjct: 1 MRYPILIHPNDKLKIPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + INP+II + S+ EGCLSIP VKR+ +TVRY D + + Sbjct: 61 EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|282877697|ref|ZP_06286512.1| peptide deformylase [Prevotella buccalis ATCC 35310] gi|281300269|gb|EFA92623.1| peptide deformylase [Prevotella buccalis ATCC 35310] Length = 176 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 7/163 (4%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-----QDHAH 68 LR+V++ I + LI +M E + S+DGIGLAA QIG R+VVIDL + Sbjct: 2 LRKVAQDITPEYEGLGQLIQDMFETLDSSDGIGLAAPQIGKSIRVVVIDLNVLSDDFPEY 61 Query: 69 RKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + +INP II + EGCLSIP V R+ I V+YMD + + Sbjct: 62 KDFRRAYINPHIIEIDENAPKESMDEGCLSIPGIHEAVSRTTRIHVQYMDEDFTPHDEWI 121 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G LA +QHE DHL+G +F+D +S ++ MI K+ + Q + Sbjct: 122 EGYLARVMQHEFDHLDGKMFVDRISPFRKQMIKNKLKGMTQGK 164 >gi|323489535|ref|ZP_08094762.1| peptide deformylase [Planococcus donghaensis MPA1U2] gi|323396666|gb|EGA89485.1| peptide deformylase [Planococcus donghaensis MPA1U2] Length = 170 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 4/162 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V P+ +L P+ + ++ L+D+M E M +DG+G+AA Q+G R+ + Sbjct: 1 MAIRTVVKHPNKVLETNCEPVTVFDKNLSVLLDDMHETMVESDGVGIAAPQVGEAVRVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++ P+ +NP+++ F EGCLS P +V+R I ++ + + Sbjct: 61 VDFREGQE---PIEMVNPELVLFEGA-ETDIEGCLSFPGIFGEVERYDHIKIKAQERDGS 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + A+G A + HE+DHL+G+LF +++ +M Sbjct: 117 WYELEAEGYEARAILHEMDHLDGVLFTSKITKYVTQEELDEM 158 >gi|314923773|gb|EFS87604.1| peptide deformylase [Propionibacterium acnes HL001PA1] Length = 200 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 3/168 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + + + +L +RP+ + + D+ L+ +M M +TDG+GLAA Q+GV L V Sbjct: 22 RRVTRWGESVLHAQTRPVTEFDEDLTTLVRDMFATMNATDGVGLAATQVGVDLSLFVYIC 81 Query: 64 QDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + F NP + EGCLS P + R T D Sbjct: 82 PDANNVVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGN 141 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A CLQHE DH NGI+F D LS+ R + ++ + L Sbjct: 142 DITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189 >gi|332653344|ref|ZP_08419089.1| peptide deformylase [Ruminococcaceae bacterium D16] gi|332518490|gb|EGJ48093.1| peptide deformylase [Ruminococcaceae bacterium D16] Length = 169 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 5/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ + L +V P+ K + + +LID+M E + G+GLAA Q+G+L R+V+ Sbjct: 3 MAIREILTRGESALTKVCHPVTKFDQKLWDLIDDMKETLAEAGGVGLAAPQVGILRRVVI 62 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + +NP+I+ + EGCLS+P VKR ++ V+ D + Sbjct: 63 V----INEADEVLELVNPEIVAQQGE-QDGLEGCLSVPGLWGFVKRPEWVKVKAQDRFGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 GL A C HEL HL+G L+ + +L Sbjct: 118 EYEAEGTGLTARCFCHELAHLDGHLYTELTDKL 150 >gi|293189708|ref|ZP_06608424.1| peptide deformylase [Actinomyces odontolyticus F0309] gi|292821298|gb|EFF80241.1| peptide deformylase [Actinomyces odontolyticus F0309] Length = 212 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 32/182 (17%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I +P+L R + PI+ +S++ +L+ +M+E M++ G+GLAA Q+GV ++ V Sbjct: 1 MSILPICITGEPVLHRAAAPIDSFDSELRDLVADMIETMHAAPGVGLAAPQVGVGSQVFV 60 Query: 61 IDLQDHAH-----------RKNP---------MVFINP------------KIITFSDDFS 88 + P V +NP I+ D + Sbjct: 61 WRYGGAGSFDTQYRDVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIA 120 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + EGCLS+P Y ++R+ +R D + + A G LA QHE DHL G L++D Sbjct: 121 LESEGCLSVPGYGYPLRRALGAILRGYDVDGNAIEVRARGWLARIFQHEYDHLQGTLYVD 180 Query: 149 HL 150 L Sbjct: 181 RL 182 >gi|298491072|ref|YP_003721249.1| peptide deformylase ['Nostoc azollae' 0708] gi|298232990|gb|ADI64126.1| peptide deformylase ['Nostoc azollae' 0708] Length = 181 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++ +P+L + + ++ I + I LI +++ +Y + +G+AA Q+ +RL ++ Sbjct: 10 PIIQLGNPMLVQKAAWVDNIQDEHIQKLIGDLIFTVYQANSVGIAAPQVAESHRLFIVAS 69 Query: 64 QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + + P INPKII +S + EGCLS+P R V R I + Y D N Sbjct: 70 RPNTRYPDAPEMKPTAMINPKIIAYSTEVIKGWEGCLSVPGIRGLVPRYQKIEIEYNDRN 129 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + Q +A QHE DHL G +F+D + + M + + Sbjct: 130 GKIQKQELTDFIARIFQHEYDHLEGKVFLDRVESTEELMTESEYQQ 175 >gi|149911294|ref|ZP_01899915.1| peptide deformylase [Moritella sp. PE36] gi|149805609|gb|EDM65611.1| peptide deformylase [Moritella sp. PE36] Length = 168 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 90/154 (58%), Gaps = 5/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++ P+ L + + +++ + LID+ML+ MY TD GIGLA+ Q+G +V Sbjct: 1 MAVLTILTAPNKKLEIPAEKVADVST-VQTLIDDMLDTMYKTDDGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + R PMV INP ++ ++ QEGCLSIP Y ADV+R + V +D Sbjct: 60 VIDISE--GRNEPMVLINPVVVE-GENKESGQEGCLSIPGYYADVERFTKVKVTALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I DG LA +QHE+DHL G LFID+LS L Sbjct: 117 NEIEINDDGFLAIAMQHEIDHLKGTLFIDYLSPL 150 >gi|87308719|ref|ZP_01090858.1| peptide deformylase [Blastopirellula marina DSM 3645] gi|87288430|gb|EAQ80325.1| peptide deformylase [Blastopirellula marina DSM 3645] Length = 194 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 1/148 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P P LR S+P++++++D+ ++ M E+MY GIGLAA Q+ + RL V +L Sbjct: 4 EVVHYPHPTLRYQSKPVKRVDADLRKIVAEMFELMYENRGIGLAANQVDLPIRLFVANLS 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +VFINP I + +EGCLS+P VKR A I + + Sbjct: 64 GTKGEGEELVFINPVI-SRPKGNEEEEEGCLSLPQVFGPVKRPAEIQFDAYNLQGELFSQ 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 DG+LA +QHE DHL+GI+F D + Sbjct: 123 RIDGMLARVVQHETDHLDGIMFFDRMQP 150 >gi|257068124|ref|YP_003154379.1| peptide deformylase [Brachybacterium faecium DSM 4810] gi|256558942|gb|ACU84789.1| peptide deformylase [Brachybacterium faecium DSM 4810] Length = 188 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I L + +R + ++ ++ L+ +M E + G GLAA Q+G +RL V Sbjct: 1 MTVRPITIVGHKALTQRTRRVREVTDELRTLVADMFETNDAASGAGLAAPQVGSRWRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCN 118 D + V +NP + F + EGCLS+P R V D + Sbjct: 61 YSCPDASGTLRRGVVLNPVLERFGGIVLDEETLEGCLSVPGEGFPTARHRGARVTGTDLD 120 Query: 119 AQHQIIYAD-GLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 ++ + G+LA LQHE+DHL G L++D L+ +R Sbjct: 121 GAEVVVEDEGGVLARALQHEVDHLEGSLYLDRLAPARRREAL 162 >gi|32477751|ref|NP_870745.1| peptide deformylase [Rhodopirellula baltica SH 1] gi|39930837|sp|Q7UHZ5|DEF_RHOBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|32448305|emb|CAD77822.1| peptide deformylase [Rhodopirellula baltica SH 1] gi|327543078|gb|EGF29520.1| peptide deformylase [Rhodopirellula baltica WH47] Length = 201 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 1/160 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ FP P LR VSRPI ++++ + ++ D ML++MY DG+GLAA Q+ + R+ V + Sbjct: 5 IIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVANPTG 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 V +NP+I + QEGCLS+P VKR + +R D Sbjct: 65 KRDEGESWVILNPEIDRPKGN-DTAQEGCLSVPGLYGQVKRPKTVRLRGFDLQGNEINQV 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 DG +A +QHE+DHL+GI+F D + + + + Sbjct: 124 LDGFMARVVQHEVDHLDGIMFFDRIGEEGLRDLEGHLEEF 163 >gi|254818949|ref|ZP_05223950.1| peptide deformylase [Mycobacterium intracellulare ATCC 13950] Length = 197 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++P+ ++ LI ++ + M + G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTKPVPVAADGSLPAELPALIADLYDTMDAAHGVGLAANQIGVG 60 Query: 56 YRLVVIDLQDHAHRKNPM--VFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D R V +NP + T D EGCLS+P R+ Sbjct: 61 LRVFVYDCADERGRTERRRGVVVNPVLETSEVPETMPDPDNDDEGCLSVPGESFPTGRAK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + + + L A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGNPVALEGNDLFARMLQHETGHLDGFLYLDRL 162 >gi|330807956|ref|YP_004352418.1| peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376064|gb|AEA67414.1| peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 179 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ E + ++ LID+M + M S G+GLAA QIGV +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + INP I EGCLS+P R V+R I Sbjct: 61 VIFGFEHSERYPDAEAVPQTILINPLITPLGPQMEEGFEGCLSVPGLRGAVERYQDIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + + YA G A +QHE DHL G L+ +S + T+ M Sbjct: 121 GFDPKGEPIVRYASGFHARVVQHECDHLIGRLYPSRISDFSKFGFTEVM 169 >gi|158321369|ref|YP_001513876.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] gi|158141568|gb|ABW19880.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] Length = 150 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 88/153 (57%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + + DPILR+ S+ +E ++ I ++++M E MY T +G GLA QIG+L RLV Sbjct: 1 MALREIRLMEDPILRKKSKKVEVVDDKIRQILEDMAETMYHTENGGGLAGPQIGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + M +NP+I+ + EGCLSIP+ + R A + V ++ Sbjct: 61 VIDMG-----QGLMKLVNPRIV-KEEGTQTVIEGCLSIPNQFGKLARPAKVIVEALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I A G LA C HE+DHLNGILF D ++ Sbjct: 115 EEITITATGNLAKCFCHEIDHLNGILFTDLVTE 147 >gi|313201227|ref|YP_004039885.1| peptide deformylase [Methylovorus sp. MP688] gi|312440543|gb|ADQ84649.1| peptide deformylase [Methylovorus sp. MP688] Length = 169 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 6/151 (3%) Query: 9 FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 DP+L + + P+ + ++ LI +M + M +G G+AA QIGV R+V+ + Sbjct: 1 MGDPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVVIFGVGKNP 60 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + V +NP + +DD EGCLS+P R V R + D Sbjct: 61 RYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPRYVRLHYTGFDQYGNPI 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153 G A +QHE DHL+GIL+ + L Sbjct: 121 DRLVSGFHARVVQHECDHLDGILYPMRIRDL 151 >gi|26991243|ref|NP_746668.1| peptide deformylase [Pseudomonas putida KT2440] gi|32363154|sp|Q88EA7|DEF2_PSEPK RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|24986296|gb|AAN70132.1|AE016653_3 polypeptide deformylase [Pseudomonas putida KT2440] Length = 178 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++++ LID+M E M G+GLAA Q+G+ +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I S + EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D +ADG A +QHE DHL G L+ + + T+ + Sbjct: 121 GIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRIQDFAKFGYTEVL 169 >gi|296536912|ref|ZP_06898949.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] gi|296262760|gb|EFH09348.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] Length = 176 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+L RV+ P+ + + +I LI +M E M G+GLAA Q+ V R+ Sbjct: 1 MAILKIARMGHPVLLRVADPVPDPTDPEIRRLIRDMAETMLDAGGLGLAAPQVHVPLRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + +NP+I EGCLSIP R +V+R+ I R +D Sbjct: 61 VFRQGETV-----AALVNPEIELLGPPDQRGWEGCLSIPGLRGNVERAQRIAFRGLDVEG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +GLLA +QHE DHLNGIL+ +S Sbjct: 116 DSVEGEVEGLLARVMQHEFDHLNGILYPSRMSD 148 >gi|15594411|ref|NP_212199.1| peptide deformylase [Borrelia burgdorferi B31] gi|6014950|sp|O51092|DEF_BORBU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2687938|gb|AAC66445.1| polypeptide deformylase (def) [Borrelia burgdorferi B31] Length = 172 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 62/161 (38%), Positives = 93/161 (57%), Gaps = 4/161 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 9 EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 68 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+VFINP II S +FS Y+EGCLSIP D+ R + + + D N + I Sbjct: 69 KMAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 125 Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 126 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 166 >gi|166365029|ref|YP_001657302.1| polypeptide deformylase [Microcystis aeruginosa NIES-843] gi|166087402|dbj|BAG02110.1| polypeptide deformylase [Microcystis aeruginosa NIES-843] Length = 180 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 7/177 (3%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +PIL++ + I+ + ++D NLID+++ + + G+G+AA Q+ RL Sbjct: 1 MTQVLTITQLGNPILQQKAAAIDNLLDADCQNLIDSLITTVQAAHGVGIAAPQVARSLRL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ + + P INP+I+ S++ EGCLS+P+ R V R +I V Sbjct: 61 FIVASHPNPRYPDAPMMPPTAVINPRILRVSEEMVKGWEGCLSVPNLRGFVPRHQWIEVA 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Y D N + +A QHE DHL GILF+D L+ ++ K+ + + Sbjct: 121 YCDRNGREIRQVFRDFVARIFQHEYDHLEGILFLDRLASPADLYSEEEYQKISNIAE 177 >gi|297626643|ref|YP_003688406.1| polypeptide deformylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922408|emb|CBL56980.1| Polypeptide deformylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 206 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 3/166 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + + + I+R +RP+ + + LI +M + M + DG+GLAA Q+ L V + D Sbjct: 16 ITRWDESIMRSQTRPVTTFDDTLAQLIADMFKTMAAADGVGLAAPQVDSDLALFVFNCPD 75 Query: 66 HAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + V NP + QEGCLS P + R F D Sbjct: 76 IHDKLVYGVMCNPVVTLPEGKDRHLVSAQEGCLSWPGAYQSLARPDFAVCEGQDETGAPV 135 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + GLLA CLQHE DHL+G +F D LS+ R + ++ +L L Sbjct: 136 RVEGTGLLARCLQHETDHLHGTVFGDRLSKRARRRLDQEKEELAPL 181 >gi|225552226|ref|ZP_03773166.1| peptide deformylase [Borrelia sp. SV1] gi|225371224|gb|EEH00654.1| peptide deformylase [Borrelia sp. SV1] Length = 165 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ +E I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQVENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+VFINP II S + S Y+EGCLSIP D+ R + + + D N + I Sbjct: 62 KMAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|260890452|ref|ZP_05901715.1| hypothetical protein GCWU000323_01622 [Leptotrichia hofstadii F0254] gi|260859694|gb|EEX74194.1| peptide deformylase [Leptotrichia hofstadii F0254] Length = 171 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ P LR S ++ ++ + +D M+ +M +G+GLAA Q+ + R V+ Sbjct: 3 IVLYGHPTLREKSEKVDAVDDSLRETLDEMVALMRKANGVGLAANQVDIAKRFFVL---- 58 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H INP+I+ FS++ + +EGCLSIP V R A I V+Y++ N + + Sbjct: 59 -EHEGVVKKVINPEILEFSEEIADMEEGCLSIPGIYKKVNRPAKIKVKYLNENGEEVVEE 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D + A QHE DH+ GILF D LS + + ++ KK+ L + Sbjct: 118 LDEMWARAFQHEFDHIEGILFTDKLSVMNKRLVAKKLDVLKK 159 >gi|118443269|ref|YP_877731.1| peptide deformylase [Clostridium novyi NT] gi|118133725|gb|ABK60769.1| peptide deformylase [Clostridium novyi NT] Length = 158 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 13/170 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V + +LRR SR IEKI+ +++ LI ++ + +YS DG+GLAA QIGVL R + Sbjct: 1 MAIKNIVTADNQLLRRKSRRIEKIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+D +P++ +NPKI+ + EGCLS P Y V R + V M+ + Sbjct: 61 IDLRDGN---DPLILLNPKILKKIGKYE-DAEGCLSYPGYEGVVIRPRKVIVAGMNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A GL+A + HE DHL+G+L++D + KKM K+ + Sbjct: 117 MVQYVATGLMARAICHETDHLDGVLYMD---------LAKKMYKIPTEEE 157 >gi|82701784|ref|YP_411350.1| peptide deformylase [Nitrosospira multiformis ATCC 25196] gi|82409849|gb|ABB73958.1| Peptide deformylase [Nitrosospira multiformis ATCC 25196] Length = 177 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ DP L V+R +E + L+ +M + M + +G GLAA QIG+ ++V Sbjct: 1 MPIKPVLKMGDPRLLEVARKVENFSTPEFGALLRDMHDTMEALEGAGLAAPQIGIDLQVV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + ++ A V +NP + ++ EGCLS+P R V R A I Sbjct: 61 IFGVKRNLRYPDAEEVPYTVLVNPVLTPLTEYMEQDWEGCLSVPGMRGMVPRYARIRYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D +G A +QHE DHL GIL+ ++ + T Sbjct: 121 SDQYGNRIDRTVEGFHARVVQHECDHLQGILYPMRITDFRTFGFT 165 >gi|239945304|ref|ZP_04697241.1| peptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291448765|ref|ZP_06588155.1| peptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291351712|gb|EFE78616.1| peptide deformylase [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 4/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + +LRR + + ++ L+D+M G GLAA QIGV ++ V Sbjct: 35 AVHRITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFV 94 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D+ D ++ +NP + + EGCLS+P V R VR D Sbjct: 95 WDITDDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDM 154 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +I G A CLQHE DHL+G L++D L+R +R ++M++ Sbjct: 155 DGAPLVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAE 201 >gi|257062237|ref|YP_003140125.1| peptide deformylase [Cyanothece sp. PCC 8802] gi|256592403|gb|ACV03290.1| peptide deformylase [Cyanothece sp. PCC 8802] Length = 178 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Query: 6 LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + +PILR+ ++ I +I + ++ LID ++ G+G+AA Q+ RL ++ Sbjct: 7 IAELGNPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILASH 66 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + N P+ INP+I++ S + EGCLS+P R V R ++ V Y D Sbjct: 67 PNPRYPNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDRFG 126 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Q Q +A QHELDHLNG++F+D + Sbjct: 127 QFQQQKLTDFVARIFQHELDHLNGLVFLDRVE 158 >gi|145220780|ref|YP_001131458.1| peptide deformylase [Mycobacterium gilvum PYR-GCK] gi|315442266|ref|YP_004075145.1| peptide deformylase [Mycobacterium sp. Spyr1] gi|189083073|sp|A4T2T4|DEF_MYCGI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145213266|gb|ABP42670.1| peptide deformylase [Mycobacterium gilvum PYR-GCK] gi|315260569|gb|ADT97310.1| peptide deformylase [Mycobacterium sp. Spyr1] Length = 197 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +P+ I DP+L + PI + +D+ +LI ++ + M + G+GLAA QIGV Sbjct: 1 MAVRPICIVGDPVLHTATEPIPVGPDGSLPADLADLITDLYDTMDAAHGVGLAANQIGVN 60 Query: 56 YRLVVIDLQDHAHR--KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D + + V +NP + T D EGCLS+P R+ Sbjct: 61 KRVFVYDCADARKKTVRRRGVVVNPVLETSEVPETMPDPEDDDEGCLSVPGESFPTGRAD 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + I L A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGTPITIEGTDLFARMLQHETGHLDGFLYLDSL 162 >gi|297158757|gb|ADI08469.1| peptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 178 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 9 FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + +L R R + + ++ LID+M MY DG GLAA Q+GV RL V D D Sbjct: 1 MGEEVLSRPCREVTEFGTPELSALIDDMFLTMYVADGAGLAANQVGVDLRLFVYDCPDDY 60 Query: 68 HRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ INP + S EGCLS+P V R+ R D + +I Sbjct: 61 GIRHVGHIINPVLDLPGPGSRRLVDDFEGCLSVPGAAMAVPRTDRAVARGFDKDGDPLVI 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 G A CLQHE DH+ G ++D LS+ R ++M Sbjct: 121 EGLGYFARCLQHETDHVVGHTYLDRLSKRDRKAALRQME 159 >gi|296120519|ref|YP_003628297.1| peptide deformylase [Planctomyces limnophilus DSM 3776] gi|296012859|gb|ADG66098.1| peptide deformylase [Planctomyces limnophilus DSM 3776] Length = 196 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 7/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V + P LR S P+ +INS++ I M E+MY+ GIGLA+ Q+ + + + Sbjct: 1 MAL-EIVKYGHPALRHKSTPVTEINSELRKAIAEMFELMYAAKGIGLASNQVAIPRQFFI 59 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++L D A + +VFINP I+ +EGCLS P VKR+ + + D + Sbjct: 60 LNLTGDAAEKDEEVVFINPVILNRKSS-CEGEEGCLSFPGLYGPVKRAGEVLIEAFDLDG 118 Query: 120 QHQII----YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + D L +QHE DHL+G+LFID ++ R ++ + Q Sbjct: 119 NCFEMTLSAKEDDLAVRAVQHESDHLDGMLFIDRMTDRARKERQVEIDQFEQ 170 >gi|288817783|ref|YP_003432130.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|288787182|dbj|BAI68929.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|308751381|gb|ADO44864.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] Length = 168 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 92/170 (54%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + ++ +PD L+ S+ + +++++ M S+ G +G+AA Q+ V R++ Sbjct: 1 MRRLEILKYPDERLKIPSKEVSDFGKFFSEFLESLVFTMRSSPGCVGIAAPQVNVHKRVI 60 Query: 60 VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 V+D H++N + V +NP I+ + + +EGCLS+PDY +VKR +I V Sbjct: 61 VVDTSISKHKENKLSHGLLVLVNPIILQREGEIVI-REGCLSVPDYTGNVKRHYWIKVSA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D +G A +QHE+DHL+G +F++ L K ++ +K+ + Sbjct: 120 LDVKGNPVEFETEGFEAVVIQHEIDHLDGKVFLERLVSPK-ELFKRKVYR 168 >gi|239991763|ref|ZP_04712427.1| peptide deformylase [Streptomyces roseosporus NRRL 11379] Length = 206 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 4/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + +LRR + + ++ L+D+M G GLAA QIGV ++ V Sbjct: 22 AVHRITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D+ D ++ +NP + + EGCLS+P V R VR D Sbjct: 82 WDITDDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDM 141 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +I G A CLQHE DHL+G L++D L+R +R ++M++ Sbjct: 142 DGAPLVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAE 188 >gi|124516653|gb|EAY58161.1| Polypeptide deformylase [Leptospirillum rubarum] Length = 177 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 3/165 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ + DP L S + +I+ ++ + + M E++Y GIG+AA Q+G R V D+ Sbjct: 6 ILSYGDPRLLIKSTEVTRIDQEMSDFVRGMFELLYRVPGIGIAAPQVGCNMRFFVFDMNR 65 Query: 66 HA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 A + P+ INP I +EGCLS P V+R+ I ++ +D + + Sbjct: 66 RADPGSRTPVTMINPVISAKEGAI-TQEEGCLSFPGIFVPVERALRIEIKGVDMEGKDLV 124 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +GL A +QHE+DHL G+L +H++R + + K+M + ++ Sbjct: 125 LEGEGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEMRAIEKI 169 >gi|227874915|ref|ZP_03993067.1| peptide deformylase [Mobiluncus mulieris ATCC 35243] gi|269976483|ref|ZP_06183468.1| peptide deformylase [Mobiluncus mulieris 28-1] gi|306818239|ref|ZP_07451969.1| peptide deformylase [Mobiluncus mulieris ATCC 35239] gi|307701754|ref|ZP_07638768.1| peptide deformylase [Mobiluncus mulieris FB024-16] gi|227844492|gb|EEJ54649.1| peptide deformylase [Mobiluncus mulieris ATCC 35243] gi|269935284|gb|EEZ91833.1| peptide deformylase [Mobiluncus mulieris 28-1] gi|304648978|gb|EFM46273.1| peptide deformylase [Mobiluncus mulieris ATCC 35239] gi|307613012|gb|EFN92267.1| peptide deformylase [Mobiluncus mulieris FB024-16] Length = 164 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 7/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + + DP+LR I+ + + L++++LE + GLAA QIGV R Sbjct: 1 MAFREIRVVGDPVLRTPCEWIKDPRDPGVKQLVEDLLENVDQEGRAGLAANQIGVSLRAF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ +NPK++ S D++ EGCLS+P+ +R+ + V +D + Sbjct: 61 SWNIDGEIGY-----VLNPKLVEVSQDEYQDGDEGCLSVPNLFYPTERAWYARVEGIDLD 115 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + ++ + L+ CLQHE DHL GIL+ID L R R +++ K+ Sbjct: 116 GKPVVVEGEELMGRCLQHETDHLEGILYIDKLERKYRKAALQQVRKM 162 >gi|183601693|ref|ZP_02963063.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219683774|ref|YP_002470157.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|241190808|ref|YP_002968202.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196214|ref|YP_002969769.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219299|gb|EDT89940.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219621424|gb|ACL29581.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|240249200|gb|ACS46140.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250768|gb|ACS47707.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793797|gb|ADG33332.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis V9] Length = 160 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR PI +I + NL+ ++L+ + G++A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP + + EGCLS+P KR+ + VR MD + Sbjct: 61 YNIDGKIGY-----VLNPVLEETRGE-QYGDEGCLSLPKLWYKTKRADYARVRGMDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ DG++ LQHE DHL+G L+ID L + Sbjct: 115 EIVLEGDGIMGRMLQHETDHLDGHLYIDRLEK 146 >gi|71737618|ref|YP_273728.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558171|gb|AAZ37382.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325402|gb|EFW81467.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076] Length = 179 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I S EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|297572267|ref|YP_003698041.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595] gi|296932614|gb|ADH93422.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595] Length = 224 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 9/170 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+L + S + + + L +M E + G+GLAA QIG+ + V Sbjct: 1 MLYPIHVYGSPVLHKTSAKVTVFDEKLATLAQDMFETCEAAPGVGLAAPQIGLDLAMFVW 60 Query: 62 DLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 H+ NP + I P + +EGCLS P Y+ ++RS +R Sbjct: 61 MYDGPEHKGPQRGVAVNPTLLIEPVDVFEPGP--ADEEGCLSFPGYQYGLRRSPRAVLRA 118 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + A G A LQHE DHL G +++D L+ + K M + Sbjct: 119 QDEKGEWYDLEATGWFARILQHEYDHLKGRIYVDRLTGKPAHQVEKVMKR 168 >gi|330880564|gb|EGH14713.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 169 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 12/163 (7%) Query: 10 PD-PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 PD P+LR+VS ++K N ++ L+D+M E M +G+GLAA QIGV R++VI+ + Sbjct: 8 PDAPLLRKVSAQVDKFSNGELRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIEFSGNE 67 Query: 68 HR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R P V INP I + + +EGC S+P V R A I D + + Sbjct: 68 ERAPGESPVPPTVLINPVITS-GVGRTEGREGCFSVPGKIGIVPRYATIEYTAQDMDGLN 126 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL---KRDMITKK 161 A+G A +QHE+DHLNGIL+ID S + +R+ I K Sbjct: 127 VRGKAEGFHARIIQHEVDHLNGILYIDIASEVSLYQREPIASK 169 >gi|237796060|ref|YP_002863612.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|229262415|gb|ACQ53448.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 178 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D +L+RVSR +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+ + + P++ INPK + +EGCLS P Y V R + + ++ + Sbjct: 83 IDLR---NGQEPIIIINPKFLKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|256958401|ref|ZP_05562572.1| formylmethionine deformylase [Enterococcus faecalis DS5] gi|256960470|ref|ZP_05564641.1| formylmethionine deformylase [Enterococcus faecalis Merz96] gi|256962963|ref|ZP_05567134.1| formylmethionine deformylase [Enterococcus faecalis HIP11704] gi|257080477|ref|ZP_05574838.1| formylmethionine deformylase [Enterococcus faecalis E1Sol] gi|257083202|ref|ZP_05577563.1| formylmethionine deformylase [Enterococcus faecalis Fly1] gi|257088235|ref|ZP_05582596.1| formylmethionine deformylase [Enterococcus faecalis D6] gi|257091366|ref|ZP_05585727.1| formylmethionine deformylase [Enterococcus faecalis CH188] gi|257417251|ref|ZP_05594245.1| formylmethionine deformylase [Enterococcus faecalis AR01/DG] gi|257417968|ref|ZP_05594962.1| formylmethionine deformylase [Enterococcus faecalis T11] gi|256948897|gb|EEU65529.1| formylmethionine deformylase [Enterococcus faecalis DS5] gi|256950966|gb|EEU67598.1| formylmethionine deformylase [Enterococcus faecalis Merz96] gi|256953459|gb|EEU70091.1| formylmethionine deformylase [Enterococcus faecalis HIP11704] gi|256988507|gb|EEU75809.1| formylmethionine deformylase [Enterococcus faecalis E1Sol] gi|256991232|gb|EEU78534.1| formylmethionine deformylase [Enterococcus faecalis Fly1] gi|256996265|gb|EEU83567.1| formylmethionine deformylase [Enterococcus faecalis D6] gi|257000178|gb|EEU86698.1| formylmethionine deformylase [Enterococcus faecalis CH188] gi|257159079|gb|EEU89039.1| formylmethionine deformylase [Enterococcus faecalis ARO1/DG] gi|257159796|gb|EEU89756.1| formylmethionine deformylase [Enterococcus faecalis T11] Length = 169 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 4/149 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 6 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 65 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + R INP II S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 66 EIDEESGRFE---LINPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 122 MEVTAYGYLARAFQHEIDHLNGELFIDKM 150 >gi|219847779|ref|YP_002462212.1| peptide deformylase [Chloroflexus aggregans DSM 9485] gi|254767576|sp|B8G5R5|DEF_CHLAD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219542038|gb|ACL23776.1| peptide deformylase [Chloroflexus aggregans DSM 9485] Length = 188 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 16/180 (8%) Query: 1 MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ D IL+ RP++ + ++ L+ +M E M++ +G+GLAA QIG+ Sbjct: 1 MAIRRILRIDDAEDRKILKMQCRPVKLPDRNLKQLVADMFETMHAANGVGLAAPQIGIPI 60 Query: 57 RLVVIDLQDHAHRK-----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 +L +I++ + P V INP+I+ S + + EGCLS+P + V Sbjct: 61 QLCIIEIPPEYEEQPDGSLIEVNPAEPYVLINPRIVKTSGEEIMRDEGCLSLPGWYGMVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R ++TV + D + +H + DGLL +QHE+DHL+GILF + + L K + Sbjct: 121 RQTWVTVEFQDLSGKHHRLRRADGLLGWAIQHEVDHLHGILFTERIRDLSTLRDITKERE 180 >gi|298346549|ref|YP_003719236.1| peptide deformylase [Mobiluncus curtisii ATCC 43063] gi|304389733|ref|ZP_07371692.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315655106|ref|ZP_07908008.1| peptide deformylase [Mobiluncus curtisii ATCC 51333] gi|315657036|ref|ZP_07909921.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236610|gb|ADI67742.1| peptide deformylase [Mobiluncus curtisii ATCC 43063] gi|304326909|gb|EFL94148.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490587|gb|EFU80210.1| peptide deformylase [Mobiluncus curtisii ATCC 51333] gi|315492428|gb|EFU82034.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 164 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 7/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + + DP+LR I + + L++++LE + GLAA QIGV R Sbjct: 1 MAFREIRVVGDPVLRTPCDWITDPRDPGVKQLVEDLLENVDEDGRAGLAANQIGVSLRAF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ +NPK++ S D++ EGCLS+P KR+ + V +D + Sbjct: 61 SWNIDGEIGY-----VLNPKLVAMSEDEYQDGDEGCLSVPGLFYPTKRAWYARVEGIDLD 115 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + ++ + L+ CLQHE DHL G L++D L R R +++ K+ Sbjct: 116 GKPLVVEGEELMGRCLQHECDHLEGHLYLDKLERKYRKEALQQIRKM 162 >gi|332709095|ref|ZP_08429064.1| peptide deformylase [Lyngbya majuscula 3L] gi|332352146|gb|EGJ31717.1| peptide deformylase [Lyngbya majuscula 3L] Length = 178 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 6/167 (3%) Query: 6 LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + +PILR+ S+ + + + + LID ++ + +G+G+AA Q+ YRL ++ + Sbjct: 8 IAQLGNPILRQHSQGVHNLLDERLQQLIDQLIATATAANGVGIAAPQVSQSYRLFIVASR 67 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P INP +I+ D EGCLSIP R V R + I V Y + Sbjct: 68 PNLRYPHAPLMEPTAMINPSMISHDTDMVKDWEGCLSIPGIRGLVPRYSRIEVEYTNRYG 127 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q+Q +A QHE DHL GI+F+D + + M ++ K + Sbjct: 128 QYQRQQLTDFVARIFQHEYDHLEGIVFLDRVESTQEMMTEEEYQKQI 174 >gi|291613763|ref|YP_003523920.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] gi|291583875|gb|ADE11533.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] Length = 177 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ D L R + + + ++ L+ +M E M + DG+GLAA QIGV R+V Sbjct: 1 MATREVLRMGDVRLLRKAGEVRLFDTPELHALLKDMRETMLAMDGVGLAAPQIGVDLRVV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + ++ A V INP + SD EGCLS+P R V R + + Sbjct: 61 IFEVNQNPRYPDAETVPQTVLINPVLTPLSDVMEEGWEGCLSVPGMRGLVPRYTHLRYQG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D G A +QHE DHL+GIL+ + +K Sbjct: 121 RDEYGALIDRTVSGFHARVVQHECDHLDGILYPMRIRDMK 160 >gi|255994858|ref|ZP_05427993.1| peptide deformylase [Eubacterium saphenum ATCC 49989] gi|255993571|gb|EEU03660.1| peptide deformylase [Eubacterium saphenum ATCC 49989] Length = 154 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ +RP+ ++ I L+ +M E M+ G+G+AA Q+G+L R+ + Sbjct: 1 MALRQVRKKGDELLRKKARPVGEVTDRIKLLLQDMEETMHKEGGVGIAAPQVGILKRMFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ + +P I+P+II S + +EGCLS+P V R I V+Y + + Sbjct: 61 ME----PVQGSPEYVIDPEIIKASGE-QECEEGCLSVPGVVGTVIRPEKIEVKYTGLDGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A HE DHL G+LFID S +++ Sbjct: 116 ERRRLLTEFEAIVFSHEFDHLEGVLFIDKASNIRK 150 >gi|251772750|gb|EES53312.1| peptide deformylase [Leptospirillum ferrodiazotrophum] Length = 184 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 8/161 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + +P+LR++S P+ K + +D+M+E M DG+GLAA Q+ V + Sbjct: 1 MALLKIAKMGNPVLRKISEPVSKEEIARPEFQRFLDDMIETMKDEDGLGLAAPQVHVSKQ 60 Query: 58 LVVID-LQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +V+I+ L D P +V INP S + EGCLS+ + R V RS + + Sbjct: 61 VVIIESLDDPRSEDGPPTPLLVLINPVFKYMSKETRTGWEGCLSLDNLRGKVTRSRAVKL 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + ++ + A LQHE+DHL G LF+D + + Sbjct: 121 EALGRKGETIVLDWEEFPAVVLQHEIDHLRGHLFVDRMKDM 161 >gi|329114617|ref|ZP_08243376.1| Peptide deformylase 1 [Acetobacter pomorum DM001] gi|326696097|gb|EGE47779.1| Peptide deformylase 1 [Acetobacter pomorum DM001] Length = 174 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+LR+ ++ + + DI LI +M E + + G+GLAA Q+ V RL Sbjct: 1 MAVLAIARMGHPVLRQSAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLF 60 Query: 60 VIDLQ--DHAHRKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + +P + INP + D+ + EGCLS+PD R +V R I Sbjct: 61 IYSVPLARSEGEDDPPLPVQALINPILTPVDDETQLRAEGCLSLPDLRGEVPRYKRIWYA 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + Q A G A +QHE+DHL+GIL+ ++ + + K++++ Sbjct: 121 GFDQHGQKVEGMATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKEITR 171 >gi|88855570|ref|ZP_01130234.1| polypeptide deformylase [marine actinobacterium PHSC20C1] gi|88815477|gb|EAR25335.1| polypeptide deformylase [marine actinobacterium PHSC20C1] Length = 163 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR V PI + LI +++E + GLAA QIGV R Sbjct: 1 MAVREIRLFGDPVLRSVCDPITVGDPHAAALIADLIESVQIPGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ INP + S D + EGCLS+P + R F V +D + Q Sbjct: 61 YNIDGEVGY-----IINPVLAEVSGDPELVDEGCLSVPGFYFLRSRYPFARVTGVDLDGQ 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +GL+A LQHE DHL+G L+I+ L + + + K Sbjct: 116 PVELSGEGLMAQALQHETDHLDGHLYIEGLDSETKREAMRAIRK 159 >gi|152966929|ref|YP_001362713.1| peptide deformylase [Kineococcus radiotolerans SRS30216] gi|151361446|gb|ABS04449.1| peptide deformylase [Kineococcus radiotolerans SRS30216] Length = 181 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR+ + + + ++ L+ ++ + M + G GLAA Q+GV R+ Sbjct: 1 MAIQPIRLFGDPVLRQRADEVTTFDKELRQLVKDLEDTMLAAPGAGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +NP + S++ EGCLS P AD +RS + + D + + Sbjct: 61 YHADDEIG-----HLVNPVLD-LSEECQEGDEGCLSFPGIVADTRRSLHVVAKGFDMHGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I A +QHE DHL+G+LFID L + +R + K + + L Sbjct: 115 PITITGSEFKARAIQHETDHLDGVLFIDRLDKAQRKLALKAVREAEWL 162 >gi|227554544|ref|ZP_03984591.1| peptide deformylase [Enterococcus faecalis HH22] gi|257078288|ref|ZP_05572649.1| formylmethionine deformylase [Enterococcus faecalis JH1] gi|293385128|ref|ZP_06630954.1| peptide deformylase [Enterococcus faecalis R712] gi|293389101|ref|ZP_06633573.1| peptide deformylase [Enterococcus faecalis S613] gi|294779979|ref|ZP_06745359.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|307273623|ref|ZP_07554851.1| peptide deformylase [Enterococcus faecalis TX0855] gi|307288889|ref|ZP_07568862.1| peptide deformylase [Enterococcus faecalis TX0109] gi|307292141|ref|ZP_07572007.1| peptide deformylase [Enterococcus faecalis TX0411] gi|312910850|ref|ZP_07769686.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|227176342|gb|EEI57314.1| peptide deformylase [Enterococcus faecalis HH22] gi|256986318|gb|EEU73620.1| formylmethionine deformylase [Enterococcus faecalis JH1] gi|291077605|gb|EFE14969.1| peptide deformylase [Enterococcus faecalis R712] gi|291081569|gb|EFE18532.1| peptide deformylase [Enterococcus faecalis S613] gi|294452960|gb|EFG21382.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|306496794|gb|EFM66345.1| peptide deformylase [Enterococcus faecalis TX0411] gi|306500161|gb|EFM69505.1| peptide deformylase [Enterococcus faecalis TX0109] gi|306509636|gb|EFM78678.1| peptide deformylase [Enterococcus faecalis TX0855] gi|311288873|gb|EFQ67429.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|315034825|gb|EFT46757.1| peptide deformylase [Enterococcus faecalis TX0027] gi|315150901|gb|EFT94917.1| peptide deformylase [Enterococcus faecalis TX0012] gi|315164416|gb|EFU08433.1| peptide deformylase [Enterococcus faecalis TX1302] gi|315167224|gb|EFU11241.1| peptide deformylase [Enterococcus faecalis TX1341] gi|315172963|gb|EFU16980.1| peptide deformylase [Enterococcus faecalis TX1346] gi|315573272|gb|EFU85463.1| peptide deformylase [Enterococcus faecalis TX0309B] gi|327536241|gb|AEA95075.1| formylmethionine deformylase [Enterococcus faecalis OG1RF] Length = 164 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 4/149 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 1 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + R INP II S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 61 EIDEESGRFE---LINPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145 >gi|268680776|ref|YP_003305207.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] gi|268618807|gb|ACZ13172.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] Length = 171 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 4/155 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++++P+ ILR SR + ++ + L+D+M E M + +GIGLAA+QIGV ++I Sbjct: 1 MIREILVYPNKILRETSRDVIHFDATLHELLDDMYETMITKEGIGLAAIQIGVAQNALII 60 Query: 62 DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L D ++N INP I+ VYQEGCLS+P Y +V R+ I +R+ D Sbjct: 61 NLVDETGLQKKENLYEIINPVILEKDGST-VYQEGCLSVPGYYDEVTRAEHIKLRFYDRM 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 L+A +QHE+DHL G LFI+ LS L Sbjct: 120 GVMHEEEFRDLMAIAVQHEMDHLKGHLFIEKLSYL 154 >gi|182701890|ref|ZP_02617367.2| peptide deformylase [Clostridium botulinum Bf] gi|182674086|gb|EDT86047.1| peptide deformylase [Clostridium botulinum Bf] Length = 178 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D +L+RVSR +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+ + + P++ INPK + +EGCLS P Y V R + + ++ + Sbjct: 83 IDLR---NGQEPIIIINPKFLKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|119485654|ref|ZP_01619929.1| polypeptide deformylase [Lyngbya sp. PCC 8106] gi|119456979|gb|EAW38106.1| polypeptide deformylase [Lyngbya sp. PCC 8106] Length = 175 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 7/172 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +P+LRR ++PI I + D+ LIDN++ + T+G+G+AA Q+ RL Sbjct: 1 MTEILQVAQLGNPVLRRHAQPITDIADQDLQTLIDNLIATVLKTNGVGIAAPQVSRSDRL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + P INPKI+ S + EGCLSIP R V R I V Sbjct: 61 LIVASRPNRRYPQAPLMAPTAMINPKIVNHSTEQEKGWEGCLSIPGVRGLVPRYQTIQVE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 Y D + Q Q +A QHE DHL GI+F+D ++ + + + L Sbjct: 121 YTDRSGQLQRQQLTDFVARIFQHEYDHLEGIVFLDRVNDEQDVITEAEYQAL 172 >gi|218249152|ref|YP_002374523.1| peptide deformylase [Cyanothece sp. PCC 8801] gi|218169630|gb|ACK68367.1| peptide deformylase [Cyanothece sp. PCC 8801] Length = 178 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Query: 6 LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + +PILR+ ++ I +I + ++ LID ++ G+G+AA Q+ RL ++ Sbjct: 7 IAELGNPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILASH 66 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + N P+ INP+I++ S + EGCLS+P R V R ++ V Y D Sbjct: 67 PNPRYPNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDRFG 126 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Q Q +A QHELDHLNG++F+D + Sbjct: 127 QFQQQKLTDFVARIFQHELDHLNGLIFLDRVK 158 >gi|225549344|ref|ZP_03770317.1| peptide deformylase [Borrelia burgdorferi 94a] gi|225370202|gb|EEG99642.1| peptide deformylase [Borrelia burgdorferi 94a] Length = 165 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 62/161 (38%), Positives = 93/161 (57%), Gaps = 4/161 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+VFINP II S +FS Y+EGCLSIP D+ R + + + D N + I Sbjct: 62 KMAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|297617045|ref|YP_003702204.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680] gi|297144882|gb|ADI01639.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680] Length = 153 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ PDP+LR + P+ N ++ L++NM + +Y +G+GLAA QIGVL R+VV Sbjct: 1 MAAYQIVVVPDPVLREKALPVTSFNQGLIRLLENMKDSLYEAEGVGLAAPQIGVLRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D + INP+I+ + EGCLSIP+ R VKR+ + V ++ + Sbjct: 61 FDAGD-----GLVELINPRILEE-EGEEAGIEGCLSIPNTRGLVKRAKRVVVEALNRYGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I +GL+A +QHE+DHL+GILF D Sbjct: 115 NIRIEGEGLVARVIQHEIDHLDGILFTDRAE 145 >gi|114566758|ref|YP_753912.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318216|sp|Q0AXL3|DEF_SYNWW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114337693|gb|ABI68541.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 152 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 13/165 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ P+ ILR + P+++IN+ ++ ++DNM + MY+ DG+GLAA QIG+ R++V Sbjct: 1 MSVYQVITVPNDILRGKALPVKEINAGVLRVLDNMRDTMYAADGVGLAAPQIGIPKRMIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + N + INP+I+ + + EGCLS+P V R+ + V+ +D N Q Sbjct: 61 VDIGE-----NLLELINPEILKQEGN-QLGSEGCLSVPGIVGRVNRAKKVLVKGLDRNGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA LQHE+DHL GILFID I ++ KL Sbjct: 115 ELNFAAVDLLAKVLQHEIDHLEGILFIDKA-------IETRIEKL 152 >gi|283456090|ref|YP_003360654.1| peptide deformylase [Bifidobacterium dentium Bd1] gi|283102724|gb|ADB09830.1| def Peptide deformylase [Bifidobacterium dentium Bd1] Length = 153 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PDP+LR PI++I + +L+ ++L+ + GL+A QIGV R ++ Sbjct: 1 MPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNIDGKIG 60 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +NP + S + EGCLS+P +R+ + VR +D + ++ G Sbjct: 61 Y-----VLNPVLEETSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHG 114 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ LQHE DHL+G +++D L + +R + M Q Sbjct: 115 IMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRNHRQ 153 >gi|315604653|ref|ZP_07879716.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313665|gb|EFU61719.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] Length = 210 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 32/184 (17%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I P+L R++ P+E +S++ +L+ +M++ M++ G+GLAA Q+GV ++ V Sbjct: 1 MSILPICITGTPVLHRLAAPVESFDSELRDLVTDMIDTMHAAPGVGLAAPQVGVGSQVFV 60 Query: 61 IDLQDHA----HRKNPM----------------VFINP------------KIITFSDDFS 88 H ++ + V +NP I+ D + Sbjct: 61 WRYAGGGAFDTHYRDVLQLDEGPARGFNTVTSGVVVNPTLDLVWDTHGAGAILPAEPDIA 120 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 EGCLS+P Y ++R+ +R D + A G LA QHE DHL G L++D Sbjct: 121 HESEGCLSVPGYGYPLRRALGAVLRGYDTRGNAIEVSARGWLARIFQHEYDHLQGTLYVD 180 Query: 149 HLSR 152 L Sbjct: 181 RLDE 184 >gi|255553123|ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus communis] gi|223543236|gb|EEF44768.1| polypeptide deformylase, putative [Ricinus communis] Length = 266 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 17/169 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +V DP+L +R ++ + I +ID+M++VM G+GLAA QIGV R Sbjct: 75 MSLPDIVKAGDPVLHEPAREVDPDEIGSERIQKIIDDMVKVMRRAPGVGLAAPQIGVPLR 134 Query: 58 LVV-------IDLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 ++V I K + +V +NPK+ + +++ EGCLS+ +RA Sbjct: 135 IIVLEDTTEYIGYAPKEETKAQDRRPFDLLVILNPKLKKKGNRTALFFEGCLSVDGFRAV 194 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+RS + V +D + Q + A G A LQHE DHL+G L++D + Sbjct: 195 VERSLEVEVSGLDRSGQPIKVDASGWQARILQHECDHLDGTLYVDKMVP 243 >gi|221217366|ref|ZP_03588837.1| peptide deformylase [Borrelia burgdorferi 72a] gi|224533957|ref|ZP_03674542.1| peptide deformylase [Borrelia burgdorferi CA-11.2a] gi|225549696|ref|ZP_03770661.1| peptide deformylase [Borrelia burgdorferi 118a] gi|221192644|gb|EEE18860.1| peptide deformylase [Borrelia burgdorferi 72a] gi|224512960|gb|EEF83326.1| peptide deformylase [Borrelia burgdorferi CA-11.2a] gi|225369656|gb|EEG99104.1| peptide deformylase [Borrelia burgdorferi 118a] Length = 165 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 3/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+VFINP II S +FS Y+EGCLSIP D+ R + + + D N + I Sbjct: 62 KMAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHLNG+LFID+ ++ + K + LR Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRERGLR 163 >gi|325923638|ref|ZP_08185267.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] gi|325545882|gb|EGD17107.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] Length = 171 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M G+GLAA QI V +L+V Sbjct: 1 MIREIIRMGDKRLLRVAPPVTNLGSAELRTLVADMFETMDDARGVGLAAPQIAVDLQLMV 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A N +I S++ EGCLSIP RA + R FI R Sbjct: 61 FGFEASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164 >gi|224534861|ref|ZP_03675430.1| peptide deformylase [Borrelia spielmanii A14S] gi|224513801|gb|EEF84126.1| peptide deformylase [Borrelia spielmanii A14S] Length = 165 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 7/160 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISSGVGLAAPQVGLDLSLFVVREN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+VFINP I S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 62 KMAK---PLVFINPLITETSYELNSYKEGCLSIPGVYYDLMRPKTIVVNFYDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ + I KK+ K Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYE----ERIKKKLLK 154 >gi|195941804|ref|ZP_03087186.1| polypeptide deformylase (def) [Borrelia burgdorferi 80a] gi|223889134|ref|ZP_03623723.1| peptide deformylase [Borrelia burgdorferi 64b] gi|224533042|ref|ZP_03673648.1| peptide deformylase [Borrelia burgdorferi WI91-23] gi|226320763|ref|ZP_03796319.1| peptide deformylase [Borrelia burgdorferi 29805] gi|226322023|ref|ZP_03797548.1| peptide deformylase [Borrelia burgdorferi Bol26] gi|223885383|gb|EEF56484.1| peptide deformylase [Borrelia burgdorferi 64b] gi|224512036|gb|EEF82431.1| peptide deformylase [Borrelia burgdorferi WI91-23] gi|226232613|gb|EEH31367.1| peptide deformylase [Borrelia burgdorferi Bol26] gi|226233818|gb|EEH32543.1| peptide deformylase [Borrelia burgdorferi 29805] Length = 165 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+VFINP II S + S Y+EGCLSIP D+ R + + + D N + I Sbjct: 62 KMAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|312148406|gb|ADQ31065.1| peptide deformylase [Borrelia burgdorferi JD1] gi|312149552|gb|ADQ29623.1| peptide deformylase [Borrelia burgdorferi N40] Length = 165 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 3/165 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+VFINP II S + S Y+EGCLSIP D+ R + + + D N + I Sbjct: 62 KMAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 LA +QHE+DHLNG+LFID+ ++ + K + LR Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRERGLR 163 >gi|210633316|ref|ZP_03297750.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279] gi|210159178|gb|EEA90149.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279] Length = 178 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ PDP LR+ +E+IN +++ L++ M + M+ G GLAA Q+G +L + Sbjct: 1 MEVNGIVLSPDPRLRQECAEVEEINGELIELVERMKDQMFENGGCGLAAPQVGQTIQLAI 60 Query: 61 IDLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ID + + + +P V INP I+ SD+ EGCLSIP ++ R + V + + Sbjct: 61 IDTEYSSKKDYDPYVLINPVIVEQSDNLVPSSEGCLSIPGINCEILRPDHVVVEAYNLDG 120 Query: 120 QHQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A G L CLQHE+DHL+G D L+ +R K+ + + Sbjct: 121 DCIRYEAAGDLFCVCLQHEIDHLHGKTMFDRLTPQQRVHAMKQYQEAL 168 >gi|297844442|ref|XP_002890102.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp. lyrata] gi|297335944|gb|EFH66361.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp. lyrata] Length = 270 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L +R ++ + I +ID+M++VM G+GLAA QIGV R++V+ Sbjct: 83 EIVAAGDPVLHEKAREVDPEEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 142 Query: 62 D--------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + L + MV +NP + S+ +++ EGCLS+ +RA V+R Sbjct: 143 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVNGFRAAVERY 202 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + + A G A LQHE DHL+G L++D + Sbjct: 203 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 247 >gi|330468108|ref|YP_004405851.1| peptide deformylase [Verrucosispora maris AB-18-032] gi|328811079|gb|AEB45251.1| peptide deformylase [Verrucosispora maris AB-18-032] Length = 165 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 7/162 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62 + + I DP+LR S PI ++++ +L+ ++++ + G G+AA QIGV ++ V D Sbjct: 2 RDIRIIGDPVLRTPSEPITSFDAELRSLVTDLMDTLLGKPGRAGVAAPQIGVNAQVFVYD 61 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 H INP + SD+ EGCLSIP R+ T D + + Sbjct: 62 ADGHRG-----HMINPTLD-LSDELQDDDEGCLSIPGLYFPTPRALHATAHGFDQHGEPL 115 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I G LA LQHE DHL+G L++D L R +++ Sbjct: 116 TIAGSGFLARALQHETDHLHGRLYVDTLRGDIRRRALREIRA 157 >gi|111019610|ref|YP_702582.1| peptide deformylase [Rhodococcus jostii RHA1] gi|110819140|gb|ABG94424.1| peptide deformylase [Rhodococcus jostii RHA1] Length = 188 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 11/170 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I D L + + +S++ +D++ E + G GLAA Q+G + V Sbjct: 1 MAIRPILIAGDTRLTTPAVTVTAFDSELAAFVDDLHETNTAAHGAGLAANQVGDPRAIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115 DL D A R++ INP + S EGCLS+P R R+ + V + Sbjct: 61 YDLIDDA-RRHRGHVINPVL-ETSPRPETMPDPDDLEGCLSVPGERYPTGRADWARVVGV 118 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMITKK 161 D + + + G LA CLQHE DHL G L++D L R R MI ++ Sbjct: 119 DVDNKPISVEGTGYLARCLQHETDHLAGHLYLDRLIGRNHRAARKMIKQR 168 >gi|289663684|ref|ZP_06485265.1| peptide deformylase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 171 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIRDIIRMGDKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S + EGCLSIP RA + R +I R + Sbjct: 61 FGFDASERYPEAPAVPRTALANAQIEPLSGEMENGWEGCLSIPGLRAVIPRYRYIRYRGV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164 >gi|312962671|ref|ZP_07777160.1| peptide deformylase [Pseudomonas fluorescens WH6] gi|311283046|gb|EFQ61638.1| peptide deformylase [Pseudomonas fluorescens WH6] Length = 179 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 8/165 (4%) Query: 2 VKKPLVIFPDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ E + ++ LID+M + M G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + INP I S EGCLS+P R V R I Sbjct: 61 VIFGFEASERYPDAPPVPQTILINPLITPLSPVLEEGYEGCLSVPGLRGAVNRYQQIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 D + + +ADG A +QHE DHL G L+ ++ + Sbjct: 121 GFDPKGEPIVRFADGFHARVVQHECDHLIGRLYPSRITDFSKFGF 165 >gi|255970684|ref|ZP_05421270.1| formylmethionine deformylase [Enterococcus faecalis T1] gi|256618121|ref|ZP_05474967.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200] gi|256761051|ref|ZP_05501631.1| formylmethionine deformylase [Enterococcus faecalis T3] gi|256854795|ref|ZP_05560159.1| formylmethionine deformylase [Enterococcus faecalis T8] gi|257420429|ref|ZP_05597419.1| formylmethionine deformylase [Enterococcus faecalis X98] gi|255961702|gb|EET94178.1| formylmethionine deformylase [Enterococcus faecalis T1] gi|256597648|gb|EEU16824.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200] gi|256682302|gb|EEU21997.1| formylmethionine deformylase [Enterococcus faecalis T3] gi|256710355|gb|EEU25399.1| formylmethionine deformylase [Enterococcus faecalis T8] gi|257162253|gb|EEU92213.1| formylmethionine deformylase [Enterococcus faecalis X98] Length = 169 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 4/149 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 6 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 65 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + INP II S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 66 EIDEESGHFE---LINPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 122 MEVTAYGYLARAFQHEIDHLNGELFIDKM 150 >gi|302384945|ref|YP_003820767.1| peptide deformylase [Clostridium saccharolyticum WM1] gi|302195573|gb|ADL03144.1| peptide deformylase [Clostridium saccharolyticum WM1] Length = 151 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 58/149 (38%), Positives = 84/149 (56%), Gaps = 7/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + + F D LR S+P+E++N I ++D+M E +++T G LAA Q+G+L RLV Sbjct: 1 MALREIRTFDDNELRLKSKPVEQVNDRIRMILDDMAETLHNTPNGGALAANQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D + INP I+ S+ E CLS P V+R + V+ +D N Sbjct: 61 VIDLGDGVRK-----LINPVILW-SEGEQFEPEACLSFPGLWGKVRRPKSVVVKALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + I A +A CL HE+DHL+GI+F D Sbjct: 115 CERKIKASDFMAKCLCHEIDHLDGIVFTD 143 >gi|154509286|ref|ZP_02044928.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC 17982] gi|153798920|gb|EDN81340.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC 17982] Length = 212 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 32/182 (17%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I +P+L RV+ P++ I+S++ +L+ +M+E M++ G+GLAA Q+GV ++ V Sbjct: 1 MSILPICITGEPVLHRVADPVDSIDSELRDLVADMIETMHAAPGVGLAAPQVGVGAQVFV 60 Query: 61 IDLQDHAH-----------RKNP---------MVFINP------------KIITFSDDFS 88 + P V +NP I+ D + Sbjct: 61 WRYGGAGSFDAQYREVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIA 120 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + EGCLS+P Y ++R +R D + + A G LA QHE DHL G L++D Sbjct: 121 LESEGCLSVPGYGYPLRRVLGAVLRGYDVDGNAIEVSARGWLARIFQHEYDHLQGTLYVD 180 Query: 149 HL 150 L Sbjct: 181 RL 182 >gi|325918418|ref|ZP_08180546.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] gi|325535380|gb|EGD07248.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] Length = 176 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M G+GLAA QI V +L+V Sbjct: 6 MIREIIRMGDKRLLRVAPPVTNLGSAELQALVADMFETMDDARGVGLAAPQIAVDLQLMV 65 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A N +I SD+ EGCLSIP RA + R I R Sbjct: 66 FGFEVSERYPDAPTVPRTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRHIRYRGF 125 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A+G A +QHE DHL G L+ + Sbjct: 126 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 169 >gi|240168904|ref|ZP_04747563.1| peptide deformylase [Mycobacterium kansasii ATCC 12478] Length = 197 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++PI D+ LI +M + M + G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTPTKPIPVGADGSLPADLPQLITDMYDTMDAAYGVGLAANQIGHG 60 Query: 56 YRLVVIDLQDHAHR--KNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D + + + V INP +I D +EGCLS+P R+ Sbjct: 61 LRVFVYDCAEDRGKTARRRGVVINPVLETSEIPETMPDPDNDEEGCLSVPGESFPTGRAK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V + + I GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLGADGAPVDIEGTGLFARMLQHETGHLDGFLYLDCL 162 >gi|300861509|ref|ZP_07107593.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|312953219|ref|ZP_07772065.1| peptide deformylase [Enterococcus faecalis TX0102] gi|295114433|emb|CBL33070.1| peptide deformylase [Enterococcus sp. 7L76] gi|300848970|gb|EFK76723.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|310628836|gb|EFQ12119.1| peptide deformylase [Enterococcus faecalis TX0102] gi|315031809|gb|EFT43741.1| peptide deformylase [Enterococcus faecalis TX0017] gi|315152788|gb|EFT96804.1| peptide deformylase [Enterococcus faecalis TX0031] gi|315154709|gb|EFT98725.1| peptide deformylase [Enterococcus faecalis TX0043] gi|323479052|gb|ADX78491.1| peptide deformylase [Enterococcus faecalis 62] Length = 164 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 4/149 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 1 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + INP II S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 61 EIDEESGHFE---LINPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145 >gi|206895565|ref|YP_002246726.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265] gi|206738182|gb|ACI17260.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265] Length = 171 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 7/157 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVID 62 + + PD +LR ++ ++ + ++++M +M + G+GLAA Q+G+ R VVID Sbjct: 2 DIRVIPDKMLRAKAQKVKSFTEEDRRIVEDMFRLMKENEVEGVGLAAPQVGISKRFVVID 61 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 L + V INP+ + EGCLS+P V+R I V + + + Sbjct: 62 LDEFHE-----VLINPRWEPLGKEKEEDIEGCLSVPGVYGPVERFKKIKVSFTNLYGEKI 116 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + DG+L+ +QHE+DHL+G+LFID ++ R + Sbjct: 117 TLKLDGMLSRVVQHEVDHLDGVLFIDKITDWDRIEVM 153 >gi|168704063|ref|ZP_02736340.1| peptide deformylase [Gemmata obscuriglobus UQM 2246] Length = 184 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V +P P LR ++P+ I++D+ M+E+MY ++G+GLAA Q+ + Y+++V++ L Sbjct: 3 IVRYPHPALRAKAKPVIAIDADVQKAAAQMVELMYRSEGLGLAAPQVTLDYQMIVLNPLG 62 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +V INP I+ +EGCLS P +V+R +TV++ + + Sbjct: 63 EADQPDQEVVAINPVIVEAKGSTINDREGCLSFPGLYQNVRRYKTVTVKFYNLKGELVQT 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A L A QHE+DHL G LFID + L K + K + Sbjct: 123 TAHDLAARVWQHEIDHLQGTLFIDKMGSLGLSRSQKDLEKFI 164 >gi|83951627|ref|ZP_00960359.1| peptide deformylase [Roseovarius nubinhibens ISM] gi|83836633|gb|EAP75930.1| peptide deformylase [Roseovarius nubinhibens ISM] Length = 165 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 2/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P + +PD LR + + I + L D M+ VM + G+GLAAVQ+G ++RL V+ Sbjct: 1 MPRPCIPWPDKRLRTPAEDVAAITDETCALWDEMIAVMEAMPGVGLAAVQLGEMHRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + R + NP+++ S ++E ++P A + R +TVR+++ + Sbjct: 61 DAS--SERGQAVRMANPEVLHASAQLREHEEASPNLPGVSAKISRPRAVTVRFLNQEGEI 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL G ++ D LS++KRDM+ ++ KL Sbjct: 119 EERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARKL 162 >gi|119713702|gb|ABL97752.1| peptide deformylase [uncultured marine bacterium EB0_41B09] Length = 163 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 9 FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 +PIL + + +EK + +I LI +M++ M G GLAA Q+G +LV+ + Sbjct: 1 MGNPILLKEAEKVEKFDTPEIHELIKDMIKTMKDAQGAGLAAPQVGESIQLVIFGVDKNE 60 Query: 65 --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A V INP I + + EGCLS+P R V R I + D Sbjct: 61 RYPEAEEVPFTVLINPVITPLNQEKEDDWEGCLSVPGMRGVVPRYKTINYKGFDQYGNEI 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +G A +QHE DHL GIL+ + +K Sbjct: 121 DRDVEGFHARVVQHECDHLFGILYPSRIEDMK 152 >gi|300866152|ref|ZP_07110873.1| peptide deformylase [Oscillatoria sp. PCC 6506] gi|300335864|emb|CBN56033.1| peptide deformylase [Oscillatoria sp. PCC 6506] Length = 177 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 7/173 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +P+LRR ++ IE + + + LIDN++ + +G+G+AA Q+ YRL Sbjct: 1 MAEILQISQLGNPVLRRQAQTIENLEDEQLQKLIDNLIHTAQNANGVGIAAPQVAQSYRL 60 Query: 59 VVIDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + A P INP+II S+D EGCLSIP R V R I + Sbjct: 61 LIVASRPSTRYPQAPTMEPTAMINPQIIARSNDVVKDWEGCLSIPGIRGLVPRYQAIEIE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Y + + +A QHE DHL+G++F+D + + M ++ + + Sbjct: 121 YTARDGKLHRQELRDFVARIFQHEYDHLDGLVFLDRVENAQELMAEEEYQEQI 173 >gi|17433051|sp|Q9FV53|DEF1A_ARATH RecName: Full=Peptide deformylase 1A, chloroplastic; Short=AtDEF1; Short=AtPDF1A; Short=PDF 1A; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|5103837|gb|AAD39667.1|AC007591_32 Simalar to gi|4377403 Polypeptide Deformylase from Chlamydia pneumoniae genome gb|AE001687 [Arabidopsis thaliana] gi|13605760|gb|AAK32873.1|AF361861_1 At1g15390/F9L1_34 [Arabidopsis thaliana] gi|22136570|gb|AAM91071.1| At1g15390/F9L1_34 [Arabidopsis thaliana] Length = 259 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L +R ++ +I S+ I +ID+M++VM G+GLAA QIGV R++V+ Sbjct: 72 EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 131 Query: 62 D--------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + L + MV +NP + S+ +++ EGCLS+ +RA V+R Sbjct: 132 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 191 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + + A G A LQHE DHL+G L++D + Sbjct: 192 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 236 >gi|163848638|ref|YP_001636682.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl] gi|222526574|ref|YP_002571045.1| peptide deformylase [Chloroflexus sp. Y-400-fl] gi|254767575|sp|A9WHG7|DEF_CHLAA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767577|sp|B9LBS4|DEF_CHLSY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|163669927|gb|ABY36293.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl] gi|222450453|gb|ACM54719.1| peptide deformylase [Chloroflexus sp. Y-400-fl] Length = 188 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 22/186 (11%) Query: 1 MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ D IL+ RP++ + ++ L+ +M E M + G+GLAA QIG+ Sbjct: 1 MAIRRILRIDDAEDRKILKMQCRPVKLPDRNLKQLVADMFETMRAAHGVGLAAPQIGIPI 60 Query: 57 RLVVIDLQDHAHRK-----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 +L +I++ + P V INP+I+ S + + EGCLS+P + V Sbjct: 61 QLCIIEIPAEYEERADGSVVEVAPAEPYVLINPRIVKMSGEEVMRDEGCLSLPGWYGMVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R ++TV + D N +H + G LL +QHE+DHLNGILF + + L + Sbjct: 121 RQTWVTVEFQDLNGKHHRLRRAGDLLGWAIQHEVDHLNGILFTERIRDLST------LRD 174 Query: 165 LVQLRD 170 + + RD Sbjct: 175 ITKERD 180 >gi|291280498|ref|YP_003497333.1| polypeptide deformylase [Deferribacter desulfuricans SSM1] gi|290755200|dbj|BAI81577.1| polypeptide deformylase [Deferribacter desulfuricans SSM1] Length = 167 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 102/168 (60%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + ++ +P+P+L+ +S+ + ++ DI N+I ++++ M + + G+AA QIG L R++ Sbjct: 1 MPIREVLTYPNPLLKEISKEVTELTDDIKNIIKDLVDTMDATSHSTGIAAPQIGELVRII 60 Query: 60 VIDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ID + KN V INP+I+ + + +EGC+S+PDY +V R+ + V+++D Sbjct: 61 AIDPGKNKKCKNHHGKRVLINPEIVKW-EGLIQSREGCMSVPDYTGNVNRAEKVVVQFLD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 N Q A+G A LQHE+DHL+GILFID + + D+ +K K Sbjct: 120 ENLQPGAFEAEGFEAILLQHEIDHLDGILFIDRIISKRTDLFRRKKYK 167 >gi|256587795|gb|ACU98927.1| polypeptide deformylase [Propionibacterium jensenii] Length = 200 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +P+L ++P+ + D+ LI +M + DG+GLAA Q+G+ L + Sbjct: 20 TLRRVTRWSEPVLHASTQPVTDFDDDLHELIRDMFVTNAAADGVGLAATQVGLSLSLFIY 79 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D + NP++ + EGCLS P + R T D Sbjct: 80 NCPDDDGVVHKGAICNPQVTLPTGRDRNLVSVDEGCLSWPGGFQPLARPDLATCTGQDPW 139 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A CLQHE DH NGI+F D LS+ R + ++ L L Sbjct: 140 GTPLSVTGTGYFARCLQHETDHCNGIVFGDRLSKRSRRKLDEQHENLDHL 189 >gi|269124846|ref|YP_003298216.1| peptide deformylase [Thermomonospora curvata DSM 43183] gi|268309804|gb|ACY96178.1| peptide deformylase [Thermomonospora curvata DSM 43183] Length = 178 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 80/161 (49%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P+ DP+LR P+ ++ + L+D+M MY+ +G GLAA QIGV ++ V D Sbjct: 13 VRPIRRLGDPVLRTECDPVRTFDAGLRRLVDDMFATMYAANGAGLAANQIGVSLQVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +D R++ INP ++ D V EGCLS+P R R V +D + + Sbjct: 73 CEDDLGRRHVGHVINPVLVAEDGDIVVEDEGCLSVPGLRFPTPRYRHAVVEGVDLDNKPL 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I G A CLQHE HL G ++ID L R + + Sbjct: 133 RIEGTGYFARCLQHETYHLRGGVYIDVLKGETRREAMRAIR 173 >gi|224531760|ref|ZP_03672392.1| peptide deformylase [Borrelia valaisiana VS116] gi|224511225|gb|EEF81631.1| peptide deformylase [Borrelia valaisiana VS116] Length = 165 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 3/156 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQINNIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVREN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+VFINP I S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 62 KMAR---PLVFINPLITETSYELNSYREGCLSIPGVYYDLMRPKAIVVSFYDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 LA +QHE+DHLNG+LFID+ ++ + K Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEERIKNKLLK 154 >gi|297623929|ref|YP_003705363.1| peptide deformylase [Truepera radiovictrix DSM 17093] gi|297165109|gb|ADI14820.1| peptide deformylase [Truepera radiovictrix DSM 17093] Length = 212 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 32/194 (16%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---- 61 + F DP+LR+V+RP+ + ++ L +M+E M+ +G+GLAA QIG+ RL V Sbjct: 5 IRYFGDPVLRKVARPVTHFDGELETLAKDMIETMFEANGVGLAAPQIGLSKRLFVALELA 64 Query: 62 ----------------------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 + ++ V +NP+II S +GCLS+P Sbjct: 65 PRAAEEAAGQEGEAEAEALSPDEKRERWGVVAEHVMVNPEIIARSG-TQYGVDGCLSVPG 123 Query: 100 YR-ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 +KR + VRY D A+G A +QHELDHL+G+LF D L +R Sbjct: 124 LFIEKMKRDRTVRVRYQDLQGAWHEREAEGHFAHVIQHELDHLDGVLFFDRLPEAERRAF 183 Query: 159 T----KKMSKLVQL 168 +++++L + Sbjct: 184 MEAHRRELAELQRQ 197 >gi|297544786|ref|YP_003677088.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842561|gb|ADH61077.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 159 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 96/153 (62%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ ++P+ +INS ++ ++D+M++ MY +G+GLAA Q+G+L RL+V Sbjct: 1 MAIRYIRKIGDEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I+ + + V EGCLSIP +VKR + V+Y+D + Sbjct: 61 IDIGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHLNG+LFID R Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147 >gi|291296560|ref|YP_003507958.1| peptide deformylase [Meiothermus ruber DSM 1279] gi|290471519|gb|ADD28938.1| peptide deformylase [Meiothermus ruber DSM 1279] Length = 194 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 16/178 (8%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P+ ++ DP+L++ + P++ S I L +NMLE M+ G+GLAA Q+GV RL Sbjct: 1 MAEILPIRLYGDPVLKKKALPVQDF-SGIPQLAENMLETMFEARGVGLAAPQVGVSQRLF 59 Query: 60 VI-DLQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRAD-VKR 106 V + D + P V +NP I + S+ EGCLS+P A+ +R Sbjct: 60 VAAEYLDDDEEEGPEADLKTRVKQLYVMVNPVITYRAGRQSIL-EGCLSLPGLYAEGAQR 118 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + V Y D + Q +++ A+G LA +QHE+DHL+GILF +S R ++ + Sbjct: 119 DLQVRVEYQDEHGQKKVLEAEGYLAVVMQHEIDHLDGILFFQRMSFADRQKFLEEHRE 176 >gi|17433049|sp|Q9FUZ0|DEF1A_SOLLC RecName: Full=Peptide deformylase 1A, chloroplastic; Short=PDF 1A; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|11320968|gb|AAG33981.1|AF271258_1 peptide deformylase-like protein [Solanum lycopersicum] Length = 277 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSR--PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 +V DP+L S+ P+E+I S+ I +I+ M++VM + G+GLAA QIG+ ++ Sbjct: 87 AMPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEMVKVMRNAPGVGLAAPQIGIPLKI 146 Query: 59 VVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +V++ + P +V INPK+ + +++ EGCLS+ +RA V Sbjct: 147 IVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPKLKKKGNKTALFFEGCLSVDGFRAVV 206 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +R + V +D N + + A G A LQHE DHL+G L++D ++ Sbjct: 207 ERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYDHLDGTLYVDKMAP 254 >gi|257486818|ref|ZP_05640859.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988665|gb|EGH86768.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010288|gb|EGH90344.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 179 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S + LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRSILKMGDERLLRIAPPVPADMFGSSKLNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I S EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|294624946|ref|ZP_06703599.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665783|ref|ZP_06731054.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600746|gb|EFF44830.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604435|gb|EFF47815.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 171 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIREIIRMGDKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S++ EGCLSIP RA + R FI R Sbjct: 61 FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGSPIERDAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164 >gi|255525805|ref|ZP_05392735.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296186362|ref|ZP_06854766.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255510538|gb|EET86848.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296049163|gb|EFG88593.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 156 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 90/155 (58%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ F D IL+R SR +EK++ +++ L++++ + +Y+ GIGLAA QIGVL +++ Sbjct: 1 MAVKQILQFGDNILKRSSRRVEKVDEELLGLVEDLKDSLYNGTGIGLAAPQIGVLKKVIF 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+D P++ INPKII EGCLS P Y V R + V + Sbjct: 61 IDLRDKTE---PILLINPKIIKKIGKEDSV-EGCLSYPGYEGIVVRPKKVIVAGKSLKWE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A+GLLA HE+DHL+GIL+ D ++ R Sbjct: 117 DVEYTAEGLLAKAFCHEIDHLSGILYTDKAKKIYR 151 >gi|331017341|gb|EGH97397.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 179 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRNILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + Q A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|32266068|ref|NP_860100.1| peptide deformylase [Helicobacter hepaticus ATCC 51449] gi|39930847|sp|Q7VIN5|DEF_HELHP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|32262117|gb|AAP77166.1| N-formylmethionyl-tRNA deformylase [Helicobacter hepaticus ATCC 51449] Length = 181 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 95/150 (63%), Gaps = 5/150 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P+ +LR+ S P+E + ++ N +D+M E + + G+GLAA+Q+G R+++I++ Sbjct: 13 ILKYPNALLRKKSIPVEIFDDNLHNFLDDMYETLIESKGVGLAAIQVGRAERILIINIPR 72 Query: 66 HA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++++ + INP +T ++ ++EGCLS+PD+ +KR +++ Y D Sbjct: 73 EEDKQQYKEDLLEIINPTFLTQ-EECVEWEEGCLSVPDFYESIKRFDKVSIAYKDRYGND 131 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 +I+ A G LA +QHE+DHLNG+LF+D L Sbjct: 132 RILKAQGFLAVAIQHEIDHLNGVLFVDKLP 161 >gi|18394237|ref|NP_563974.1| PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase [Arabidopsis thaliana] gi|11320952|gb|AAG33973.1|AF250959_1 peptide deformylase-like protein [Arabidopsis thaliana] gi|332191194|gb|AEE29315.1| peptide deformylase 1A [Arabidopsis thaliana] Length = 269 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L +R ++ +I S+ I +ID+M++VM G+GLAA QIGV R++V+ Sbjct: 82 EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 141 Query: 62 D--------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + L + MV +NP + S+ +++ EGCLS+ +RA V+R Sbjct: 142 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 201 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + + A G A LQHE DHL+G L++D + Sbjct: 202 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 246 >gi|223994725|ref|XP_002287046.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335] gi|220978361|gb|EED96687.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335] Length = 180 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 6/169 (3%) Query: 6 LVIFPDPILRRVSRPIEKI-----NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++ +P P LR + I + S+I + M VMY+T+G GLAA Q+G+ RL+V Sbjct: 5 VLKYPHPALRAPNAEITEEELTGPGSEISRIAKEMFLVMYATNGAGLAAPQVGINKRLMV 64 Query: 61 ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + D ++ +NPKI+ FS + QEGCLS P+ DV+RS +I V + Sbjct: 65 YNESGDSKRWMQEVIMVNPKIVEFSSATDIEQEGCLSFPEMGGDVQRSKWIKVEAQNLKG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A QHE DHL+G++++D LS R + ++ +LV+ Sbjct: 125 KKIKKKFTGWEARIFQHEYDHLDGVVYVDRLSEEGRKEVQGRLDELVEE 173 >gi|167040394|ref|YP_001663379.1| peptide deformylase [Thermoanaerobacter sp. X514] gi|300914478|ref|ZP_07131794.1| peptide deformylase [Thermoanaerobacter sp. X561] gi|307724286|ref|YP_003904037.1| peptide deformylase [Thermoanaerobacter sp. X513] gi|238687587|sp|B0K292|DEF_THEPX RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166854634|gb|ABY93043.1| peptide deformylase [Thermoanaerobacter sp. X514] gi|300889413|gb|EFK84559.1| peptide deformylase [Thermoanaerobacter sp. X561] gi|307581347|gb|ADN54746.1| peptide deformylase [Thermoanaerobacter sp. X513] Length = 166 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 99/163 (60%), Gaps = 6/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ ++P+ +INS I+ ++++M + MY DG+GLAA QIGVL RLVV Sbjct: 1 MAIRYVRKIGDEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I+ + + V EGCLSIP +VKR + V+Y+D + Sbjct: 61 IDVGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + I + LLA L HE+DHLNG+LFID R + +++ Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRFLDEEEKEQVK 157 >gi|89070115|ref|ZP_01157445.1| peptide deformylase [Oceanicola granulosus HTCC2516] gi|89044336|gb|EAR50479.1| peptide deformylase [Oceanicola granulosus HTCC2516] Length = 162 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 93/163 (57%), Gaps = 2/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++P LR + P+ +++ + + D M+E M + G GLAA Q+G+ RL V+ Sbjct: 1 MSRPFVMWPHKALRTRAAPVAQVDDAVRAIWDEMVEAMEAMPGYGLAAPQLGIGLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + NP+++ S + ++E ++P A +KR +TVR+++ + Sbjct: 61 DASTARGKA--VRLANPELLHASVELREHEEASPNLPGVGAALKRPRAVTVRFLNAAGET 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL AT +QH+LDHL+G ++ D LSR +R+M+ K+ K Sbjct: 119 EERDFVGLWATSVQHQLDHLDGRMYFDRLSRTRREMLLKRARK 161 >gi|300854550|ref|YP_003779534.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300434665|gb|ADK14432.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 150 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 7/154 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + D ILR+ R +EK++ I+ L+ +M + +++T +G +AA Q+GVL R V Sbjct: 1 MALRNIRTLGDEILRKKCRAVEKVDDRILTLLKDMADTLHNTENGAAIAAPQVGVLRRAV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NP+II V EGCLSIP+ + R A + V+ ++ Sbjct: 61 VIDMGEGI-----ICLVNPEIIEEEGSQEVI-EGCLSIPNKWGKLIRPAKVKVKALNEKG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I +G LA CL HE++HL+GILFID ++ Sbjct: 115 EEFTITGEGDLAKCLCHEIEHLDGILFIDKVTEF 148 >gi|225442881|ref|XP_002281834.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743418|emb|CBI36285.3| unnamed protein product [Vitis vinifera] Length = 277 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 +V DP+L ++ +E + I +ID+M++ M + G+GLAA QIG+ R+ Sbjct: 87 ALPEIVKAGDPVLHESAQEVEPGEIGSDRIQKIIDDMIKAMRTAPGVGLAAPQIGIPLRI 146 Query: 59 VV---------IDLQD--HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +V D +D A + P +V +NPK+ + + + EGCLS+ +RA V Sbjct: 147 IVLEDTKEYISYDRKDVIKAQERRPFDLLVILNPKLRKKGNRTAFFFEGCLSVDGFRAVV 206 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +R + V + N + + A G A LQHE DHL+G L++D + Sbjct: 207 ERHLQVEVTGLSRNGKPIKVDASGWKARILQHECDHLDGTLYVDKMVP 254 >gi|218680973|ref|ZP_03528870.1| peptide deformylase [Rhizobium etli CIAT 894] Length = 164 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ + L D++L M + G+G+ A IGVL R+ V Sbjct: 1 MPIRPILHYPHPALKTVCAPVSDFGPSLAELADDLLATMRAAPGVGITAAHIGVLSRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +++NP+I FS + + EG +S+P +V R I RY D Sbjct: 61 LELDKAFGVR---LYVNPEITWFSKETMNHAEGSVSMPGATDEVIRPRAIRFRYQDGAGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+G A C+QHE+D L+GI ++ LSRL+RD + KK K Sbjct: 118 VHEEAAEGFHAICIQHEVDQLDGIFWLQRLSRLRRDRLVKKWEK 161 >gi|330971091|gb|EGH71157.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 179 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIGV +L Sbjct: 1 MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + INP I S EGCLS+P R V R I Sbjct: 61 VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|183980768|ref|YP_001849059.1| polypeptide deformylase Def [Mycobacterium marinum M] gi|238690954|sp|B2HQN4|DEF_MYCMM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|183174094|gb|ACC39204.1| polypeptide deformylase Def [Mycobacterium marinum M] Length = 197 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 71/162 (43%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ D+ LI M E M + G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60 Query: 56 YRLVVIDLQDHAHRK--NPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108 RL V D D + V INP + T D EGCLS+P R+ Sbjct: 61 LRLFVYDCADDRGKAAHRRGVVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGRAT 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCL 162 >gi|254461985|ref|ZP_05075401.1| polypeptide deformylase [Rhodobacterales bacterium HTCC2083] gi|206678574|gb|EDZ43061.1| polypeptide deformylase [Rhodobacteraceae bacterium HTCC2083] Length = 163 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I ++ + ++++ M + G+G+ A QIGV+ RL V Sbjct: 1 MSVRRCIPWPDKRLRSKAADVSEITDEVCAVWTDLIDTMEAMPGVGMGANQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+I+ S + + E ++P A +KR +TV++M+ Sbjct: 61 LDAS--NERGKVIRMANPEILHASAELREHDEASPNLPGVSAVIKRPRAVTVKFMNDKGI 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL AT +QH++DHLNG L+ DHLSR+KR M+ KK KL Sbjct: 119 IDRRDFVGLWATSVQHQIDHLNGKLYFDHLSRVKRTMLIKKAQKL 163 >gi|84685502|ref|ZP_01013400.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654] gi|84666659|gb|EAQ13131.1| peptide deformylase [Rhodobacterales bacterium HTCC2654] Length = 158 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 2/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR ++P+E + ++ + D M M + G+GLAAVQ+G++ RL V+D + Sbjct: 2 WPDKRLRTAAQPVEAVTDEVRAIWDEMTLAMDAMPGVGLAAVQLGIMQRLAVVDASE--E 59 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 R + NP+++ S + E ++P A + R +TVR+MD + G Sbjct: 60 RGKAVRMANPEVLHESVKLREHDEASPNLPGVWATISRPRAVTVRFMDETGAVREQDFVG 119 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L AT +QH++DHLNG ++ DHLS+LKRD + K K + Sbjct: 120 LWATSVQHQIDHLNGKMYFDHLSKLKRDRLIAKARKAKR 158 >gi|239977965|ref|ZP_04700489.1| polypetide deformylase [Streptomyces albus J1074] gi|291449876|ref|ZP_06589266.1| polypetide deformylase [Streptomyces albus J1074] gi|291352825|gb|EFE79727.1| polypetide deformylase [Streptomyces albus J1074] Length = 206 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 6/168 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + + + IL R R + + + + L+D+M + +G GLAA Q+GV RL Sbjct: 20 AVRRITVVGEEILHRPCREVTEDAFGTAGLAALVDDMFATNQAAEGAGLAANQVGVDLRL 79 Query: 59 VVIDLQDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V D+ D ++ NP + EGCLS+P V R VR Sbjct: 80 FVWDITDDWGVRHVGHLANPVLDDVPATDRRLVEEPEGCLSVPGPYRVVPRLDRAVVRGR 139 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D + + +I G A CLQHE DHL G L++D L+R +R ++M Sbjct: 140 DKDGRPLVIEGRGYFARCLQHETDHLRGHLYLDRLARRERKSALQEMR 187 >gi|159900945|ref|YP_001547192.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] gi|159893984|gb|ABX07064.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] Length = 211 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 19/188 (10%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ DP +LR ++ I + + L+D+M+E M G+G+AA Q+GV Sbjct: 1 MAVRRVLQIEDPTDAVVLRAKAKRITSFDQSLAGLVDDMIETMREARGVGIAAPQVGVSR 60 Query: 57 RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 R+VVI+ V +NP+II S++ + QEGCLS+P V Sbjct: 61 RVVVIEEPAQYEEHEDGTQTQIAPAVLYVMVNPEIIKASEETHMLQEGCLSLPGRYTKVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYA----DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 R+ ++T++Y D + Q + D + QHELDHL+GI+F D ++ + + +K Sbjct: 121 RNKWVTIKYYDLKGREQRLRHIPAEDYKVGHIAQHELDHLDGIMFTDRMTEESKLVDYRK 180 Query: 162 MSKLVQLR 169 S+ +L+ Sbjct: 181 ESESARLK 188 >gi|154505954|ref|ZP_02042692.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149] gi|153793972|gb|EDN76392.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149] Length = 159 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +P+ K+ LI++ML+ MY G+GLAA Q+GVL ++VV Sbjct: 1 MAIREVRIMGDDILEKQCKPVTKMTMRTKILIEDMLDTMYEKYGVGLAAPQVGVLKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+II S + +EGCLS+P V R ++ VR ++ + Sbjct: 61 IDVGE-----GPIVLINPEIIETSGE-QTGEEGCLSLPGKWGIVTRPNYVKVRALNEEME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +GLLA HE+DHL G ++++ + Sbjct: 115 EVELEGEGLLARAFCHEIDHLAGHMYVERVED 146 >gi|58580698|ref|YP_199714.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425292|gb|AAW74329.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 212 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ + + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 42 MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 101 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A N +I SD+ EGCLSIP RA + R +I R Sbjct: 102 FGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 161 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 162 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 199 >gi|86609579|ref|YP_478341.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558121|gb|ABD03078.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 174 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 7/158 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + L DPIL +V+ P+ + + +LI+ ML + G+GLAA Q+G L +++ Sbjct: 1 MTFR-LRQLGDPILTQVAEPVTEFKTPALQDLIEGMLATLKEAQGVGLAAPQVGSLLQVL 59 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ + + P+V +NP+++ S + + EGCLS+P+ R V R+ + V Y Sbjct: 60 IVASRPNPRYPEAPQMQPLVMVNPRLLACSSEQVLGWEGCLSVPNCRGLVARAREVEVEY 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Q + A QHE DHL G +F+ R Sbjct: 120 YTPEGVQQRVVWQDFPARIFQHEYDHLMGRVFLQRQPR 157 >gi|312131601|ref|YP_003998941.1| peptide deformylase [Leadbetterella byssophila DSM 17132] gi|311908147|gb|ADQ18588.1| peptide deformylase [Leadbetterella byssophila DSM 17132] Length = 190 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 12/163 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + +LR+ + I K D+ + NM E MY+ GIGLA Q+ + YR+ V+ Sbjct: 1 MIYPIIGYGATVLRKKCQDIVKGELDVKQISQNMFETMYAASGIGLAGPQVNLPYRIFVV 60 Query: 62 DLQ------DHAHRKNPMV------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + +P + FIN +I+ + + Y+EGCLSIP RADV R Sbjct: 61 DGEIINNSAETEEEIDPDLVGFKKTFINAQILEETGEPWPYEEGCLSIPGIRADVYRKPV 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT+RY D + G+ A +QHE DH+ G+LF D+L+ Sbjct: 121 ITIRYFDTDWVEHTESFKGMAARIIQHEYDHIEGVLFTDYLAP 163 >gi|219685342|ref|ZP_03540161.1| peptide deformylase [Borrelia garinii Far04] gi|219673115|gb|EED30135.1| peptide deformylase [Borrelia garinii Far04] Length = 165 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 3/156 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVREN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+VFINP II S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 62 RMAR---PLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 LA +QHE+DHLNGILFID+ ++ + K Sbjct: 119 EDSDFLARIIQHEMDHLNGILFIDYYEERIKNKLLK 154 >gi|330994009|ref|ZP_08317939.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1] gi|329758955|gb|EGG75469.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1] Length = 180 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+L + +R + + L+ +M+E M G GLAA Q+ RL Sbjct: 5 MTLLKIARMGHPVLLQPARAVTDPQAPALRTLVADMIETMLDAQGAGLAAPQVHHGLRLF 64 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V + + P INP + + EGCLSIP R V R I R Sbjct: 65 VYQVPPGRSAGEDDPPCPPAALINPVLDPVDTEMVDRLEGCLSIPGMRGWVPRYRRIAYR 124 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ Q A G LA LQHE DHL+GIL+ + L R +M++ Sbjct: 125 GINGQGQPVHGVASGFLANVLQHEYDHLDGILYPMRMPDLGRMGFDSEMAR 175 >gi|28868804|ref|NP_791423.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213969590|ref|ZP_03397726.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] gi|301383364|ref|ZP_07231782.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13] gi|302058804|ref|ZP_07250345.1| peptide deformylase [Pseudomonas syringae pv. tomato K40] gi|302134493|ref|ZP_07260483.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|32363152|sp|Q886I1|DEF2_PSESM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|28852043|gb|AAO55118.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213925686|gb|EEB59245.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] Length = 179 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRNILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + Q A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|148380240|ref|YP_001254781.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|153933663|ref|YP_001384545.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153937608|ref|YP_001388061.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|148289724|emb|CAL83829.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|152929707|gb|ABS35207.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152933522|gb|ABS39021.1| peptide deformylase [Clostridium botulinum A str. Hall] Length = 150 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+T +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ V R A +TV+ ++ + Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGRVIRPAKVTVQALNEDG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|302187708|ref|ZP_07264381.1| peptide deformylase [Pseudomonas syringae pv. syringae 642] gi|330896888|gb|EGH28478.1| peptide deformylase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330942465|gb|EGH45062.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B] gi|330977866|gb|EGH77769.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 179 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + INP I S EGCLS+P R V R I Sbjct: 61 VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|330967399|gb|EGH67659.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 179 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRNILKMGDERLLRIAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + Q A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|326389546|ref|ZP_08211113.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200] gi|325994551|gb|EGD52976.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200] Length = 159 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ ++P+ +IN I+ ++++M + MY DG+GLAA QIGVL RLVV Sbjct: 1 MAIRYIRKNGDEVLRKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I+ + + V EGCLSIP +VKR + V+Y+D + Sbjct: 61 IDVGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHLNG+LFID R Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147 >gi|226949660|ref|YP_002804751.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|226844106|gb|ACO86772.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|322806631|emb|CBZ04200.1| peptide deformylase [Clostridium botulinum H04402 065] Length = 150 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+T +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|317506338|ref|ZP_07964150.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974] gi|316255348|gb|EFV14606.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974] Length = 198 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 17/182 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L R + + + D++ L+++M E + ++ G+GLAA Q+GV Sbjct: 1 MTILPIRIAGDPVLHRPTELVRLTDEGAAPPDVIVLLEDMYETLKASHGVGLAATQVGVG 60 Query: 56 YRLVVIDLQDHAHRKN---PMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRS 107 RL V D D K INP + T D +EGCLS P R R+ Sbjct: 61 LRLFVYDCPDDTSGKRVSRKGEVINPVLETSDIPEGMPDEDEDEEGCLSAPGLRYPTGRA 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ V +D Q I GL A LQHE+ HL+G L++D L +K K V+ Sbjct: 121 AWAKVTGVDRAGQPVEIEGTGLFARMLQHEVGHLDGKLYLDVLVG----RWARKAKKAVK 176 Query: 168 LR 169 Sbjct: 177 QE 178 >gi|227872147|ref|ZP_03990517.1| peptide deformylase [Oribacterium sinus F0268] gi|227842005|gb|EEJ52265.1| peptide deformylase [Oribacterium sinus F0268] Length = 164 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 4/151 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D IL + + I+++ +LI +M E MY +G+GLAA Q+G+L +L V Sbjct: 1 MAIRSIRKIGDSILEKKCKEIKEMTDKTRDLIQDMFETMYDANGVGLAAPQVGILKQLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D V INPKI ++ +EGCLS+P V R I + +D N + Sbjct: 61 VDIGDGVR----YVCINPKIEAVGEEEQCGEEGCLSVPGKEGKVTRPMNIHLEALDQNME 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A G LA HE DHL G+L+ + + Sbjct: 117 PFSLDASGFLARAFCHEYDHLQGVLYTEKVE 147 >gi|78049192|ref|YP_365367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926668|ref|ZP_08187982.1| peptide deformylase [Xanthomonas perforans 91-118] gi|78037622|emb|CAJ25367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543020|gb|EGD14469.1| peptide deformylase [Xanthomonas perforans 91-118] Length = 171 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIREIIRMGDKRLLRVAPPVSNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S++ EGCLSIP RA + R FI R Sbjct: 61 FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGTPIERDAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164 >gi|257068838|ref|YP_003155093.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] gi|256559656|gb|ACU85503.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] Length = 163 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR PI I L+ ++ + + G+AA QIGV R Sbjct: 1 MTIRPIRIVGDPVLRTPCDPIRTITEGTRTLVRDLKDTVDDEGRAGVAANQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP I+ S++ EGCLS+P RSA+ MD + Sbjct: 61 WHFVETGEIG---CILNPVIVELSEELQHDDEGCLSVPGLFYPRTRSAYARCVGMDVEGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +GL+A +QHE+ HL+G L+ID L R + +++ + Sbjct: 118 EIELAGEGLVARLIQHEVGHLDGELYIDGLERSVKKRALRQIRE 161 >gi|55297586|dbj|BAD68932.1| peptide deformylase-like [Oryza sativa Japonica Group] Length = 326 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 38/200 (19%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST----------------------- 42 +V +PDPILR ++ I + ++ +L D M +VMY+ Sbjct: 99 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYNASDSICVTLLNKQIKKGLLSTIAR 158 Query: 43 ---------------DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87 DGIGL+A Q+GV +L+V + +V +NP + S Sbjct: 159 EDIPPIEPLVSCYRTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRL 218 Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 VY+E CLS P A+V R + + D + GL A QHE DHL GILF Sbjct: 219 LVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFF 278 Query: 148 DHLSRLKRDMITKKMSKLVQ 167 D +S + + + + L + Sbjct: 279 DRMSLDVLESVREGLKDLEK 298 >gi|229592219|ref|YP_002874338.1| peptide deformylase [Pseudomonas fluorescens SBW25] gi|229364085|emb|CAY51686.1| peptide deformylase [Pseudomonas fluorescens SBW25] Length = 179 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ E + ++ LID+M + M G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + INP I EGCLS+P R V R I Sbjct: 61 VIFGFEASERYPDAPPVPQTILINPLITPLGPVLEEGYEGCLSVPGMRGAVSRYQQIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + + +ADG A +QHE DHL G L+ ++ + + M Sbjct: 121 GFDPKGEPIVRFADGFHARLVQHECDHLIGRLYPSRITDFSKFGFIEVM 169 >gi|170781748|ref|YP_001710080.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] gi|169156316|emb|CAQ01464.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] Length = 163 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +F DP+L+ VS I +I+ + L++++L+ + G+AA QIGV R Sbjct: 1 MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP I + + EGCLS+P R + +D + + Sbjct: 61 YNVGPAFGY-----VLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVISGLDLDGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I G+LA QHE+DHL+G++++D L + +R K++ + Sbjct: 116 PVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159 >gi|219684773|ref|ZP_03539715.1| peptide deformylase [Borrelia garinii PBr] gi|219671718|gb|EED28773.1| peptide deformylase [Borrelia garinii PBr] Length = 165 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 3/156 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIDSIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVV--- 58 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP II S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 59 RENRMAKPLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 LA +QHE+DHLNGILFID+ ++ + K Sbjct: 119 EDSDFLARIIQHEMDHLNGILFIDYYEERIKNKLLK 154 >gi|153955363|ref|YP_001396128.1| Def3 [Clostridium kluyveri DSM 555] gi|219855782|ref|YP_002472904.1| hypothetical protein CKR_2439 [Clostridium kluyveri NBRC 12016] gi|146348221|gb|EDK34757.1| Def3 [Clostridium kluyveri DSM 555] gi|219569506|dbj|BAH07490.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 150 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ ++ +++ I ++++M + MY T +G GLAA QIG+L RL Sbjct: 1 MALRQIRLFGDDILRKKSKEVKAVDNKIRQILNDMADTMYDTENGGGLAAPQIGILKRLA 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII + + V EGCLSIP+ +KR A + + ++ Sbjct: 61 VIDMG-----QGLIKLVNPKIIKCAGEQEVI-EGCLSIPNVFGKLKRPAKVIIEALNEEG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ LA C HE+DHL GILF D ++ Sbjct: 115 SKIILKGTKDLAKCFCHEIDHLKGILFTDLVTE 147 >gi|325261897|ref|ZP_08128635.1| peptide deformylase [Clostridium sp. D5] gi|324033351|gb|EGB94628.1| peptide deformylase [Clostridium sp. D5] Length = 158 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D IL + + + K+ LI++ML+ MY G+GLAA Q+GVL +V Sbjct: 1 MAIREVRMIGDEILTKQCKEVTKVTLRTKMLIEDMLDTMYEKMGVGLAAPQVGVLKNIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP II S + +EGCLS+P V R + VR ++ + + Sbjct: 61 IDVGE-----GPIVLINPVIIEASGE-QTGEEGCLSVPGKWGIVTRPDHVKVRALNEDME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + +GLLA HE+ HL+G L++D + Sbjct: 115 EFEMEGEGLLARAFCHEIAHLSGELYVDRV 144 >gi|237750767|ref|ZP_04581247.1| polypeptide deformylase [Helicobacter bilis ATCC 43879] gi|229373857|gb|EEO24248.1| polypeptide deformylase [Helicobacter bilis ATCC 43879] Length = 171 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 89/154 (57%), Gaps = 5/154 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ ILR +S+ ++ ++ + +D+M E M +G+GLAA+Q+ R+++I Sbjct: 1 MVLEVIHYPNKILRTISKEVQVFDNALHEFLDSMYETMMEHNGVGLAAIQVAKPLRVLII 60 Query: 62 DLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ ++++ + INP I+ + ++ EGCLS+P + +V R + I V+Y D Sbjct: 61 NIPREEDNTQYKEDLLEIINPVILHAEGEI-LWNEGCLSVPGFYEEVSRFSQIKVKYQDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +A LQHE+DHLNGILF+D L Sbjct: 120 FGVTHENIFNDFMAVALQHEMDHLNGILFVDKLP 153 >gi|21230162|ref|NP_636079.1| peptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769848|ref|YP_244610.1| peptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|188993065|ref|YP_001905075.1| peptide deformylase [Xanthomonas campestris pv. campestris str. B100] gi|25452914|sp|Q8PCN7|DEF1_XANCP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|21111696|gb|AAM40003.1| peptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575180|gb|AAY50590.1| peptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|167734825|emb|CAP53035.1| Peptide deformylase [Xanthomonas campestris pv. campestris] Length = 171 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIREIIRMGDKRLLRVAPPVTNLGSDELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A N +I SD+ EGCLSIP RA + R I Sbjct: 61 FGFEASERYPEAPAVPRTALANVQIEPLSDEMENGWEGCLSIPGLRAVIPRHRVIRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGTPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164 >gi|319442383|ref|ZP_07991539.1| polypeptide deformylase [Corynebacterium variabile DSM 44702] Length = 215 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 32/193 (16%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-------INSDIMNLIDNMLEVMYSTDGIGLAAVQIG 53 M P+VI DP+L + P+ + +++ LI +M E + G+GLAA Q+G Sbjct: 1 MSVLPVVICGDPVLHTPTTPVTEPAADQLGEGTELSTLIADMYETLELAHGVGLAANQVG 60 Query: 54 VLYRLVVIDLQDHAHRKN----------------PMVFINP-----KIITFSDDFSVYQE 92 V R+ V D D + INP +I D E Sbjct: 61 VGLRVFVYDCPDIDGPEGTRKTQEEVDAQGGPMRRGCVINPVLETSEIPETMPDPEDDVE 120 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-- 150 GCLS+P Y R+ + V D + + + G A CLQHE HL+G L+ID L Sbjct: 121 GCLSVPGYDYPTGRADWARVTGTDEHGEPTSVEGYGFFARCLQHETGHLDGHLYIDMLIG 180 Query: 151 --SRLKRDMITKK 161 +R + M+ ++ Sbjct: 181 RNARAAKKMVKRE 193 >gi|118617060|ref|YP_905392.1| peptide deformylase [Mycobacterium ulcerans Agy99] gi|158512383|sp|A0PNK2|DEF_MYCUA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|118569170|gb|ABL03921.1| polypeptide deformylase Def [Mycobacterium ulcerans Agy99] Length = 197 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 71/162 (43%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ D+ LI M E M + G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60 Query: 56 YRLVVIDLQDHAHRK--NPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108 RL V D D + V INP + T D EGCLS+P R+ Sbjct: 61 LRLFVYDCADDRRKAAHRRGVVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGRAT 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCL 162 >gi|66047008|ref|YP_236849.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a] gi|63257715|gb|AAY38811.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae B728a] Length = 179 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + + + INP I S EGCLS+P R V R I Sbjct: 61 VIFGFERNERYPEAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|85705032|ref|ZP_01036132.1| peptide deformylase [Roseovarius sp. 217] gi|85670354|gb|EAQ25215.1| peptide deformylase [Roseovarius sp. 217] Length = 164 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + P+ +I L D M+ VM + G+GLAA Q+G + L V Sbjct: 1 MAPRACLRWPDKRLRMAAAPVTEITDATRALWDEMVAVMEAMPGVGLAATQLGEMQALAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+I+ S + E +P A ++R +TVR+++ + + Sbjct: 61 VDAS--TARGQAVRMANPEILHASVQLRPHDEASPCLPGVSAMIERPRGVTVRFLNADGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL G ++ D LS +KRDM+ ++ K+ Sbjct: 119 DEERDFVGLWATSVQHQIDHLQGRMYFDRLSTVKRDMLLRRARKI 163 >gi|119946929|ref|YP_944609.1| peptide deformylase [Psychromonas ingrahamii 37] gi|119865533|gb|ABM05010.1| peptide deformylase [Psychromonas ingrahamii 37] Length = 182 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 6/156 (3%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+ P+LR+ + +E + + LI+ M+ + G+G+AA QI R+ ++ Sbjct: 10 PIAQLGHPVLRQRATEVENVLADECQQLINQMMFAVSEAGGVGIAAPQIHHSVRMFIMCS 69 Query: 64 QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + +A + P INP+I+ +S D EGCLS+P R V R + ITVRY+D Sbjct: 70 KPNARYPDAPLMAPTAIINPEILHYSSDKVKGWEGCLSVPSMRGLVPRHSQITVRYVDQQ 129 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 Q G +A QHELDHLNG+ FID L + Sbjct: 130 GNKQQQELTGFIARIFQHELDHLNGLTFIDQLESTQ 165 >gi|307328424|ref|ZP_07607600.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306885997|gb|EFN17007.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 227 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 12/156 (7%) Query: 5 PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V P+LR+ + P E + L+ M E M+S G+GLAA QIGV RL VI+ Sbjct: 21 PIVSAGVPVLRQPALPYEGQLAADQLDRLLAAMRETMHSAPGVGLAAPQIGVPLRLAVIE 80 Query: 63 LQD---------HAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 P V +NP + + EGCLSIP ++A V R I + Sbjct: 81 DPAEVAAEVQEVRGRVPQPYRVLVNPGYEPVGHGRAAFFEGCLSIPGWQAVVSRPDRIRL 140 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R D + G A +QHE DHL+G+L++D Sbjct: 141 RGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176 >gi|168183924|ref|ZP_02618588.1| peptide deformylase [Clostridium botulinum Bf] gi|182672944|gb|EDT84905.1| peptide deformylase [Clostridium botulinum Bf] Length = 150 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+T +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|282895330|ref|ZP_06303532.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9] gi|281199636|gb|EFA74496.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9] Length = 178 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 7/176 (3%) Query: 1 MVKKP-LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M K ++ + +L++ + IE IN +I LID+++ + ++G+G+AA Q+ RL Sbjct: 1 MTGKSSIIQLGNLLLQQKATEIEAINDREIQQLIDHLITTVAQSNGVGIAAPQVAQSLRL 60 Query: 59 VVIDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ + HA P INPKI+ + + + EGCLS+P R V R I V Sbjct: 61 FIVASRPNPRYPHAPEMEPTPMINPKIVGYGTEITKGWEGCLSVPGIRGLVPRYERIQVE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Y D N Q +A QHE DHL G++F+D + + + + KL+ R Sbjct: 121 YTDRNGNFQKQELVNFVARIFQHEYDHLEGLVFLDRVESPQDLISEAEYQKLMNQR 176 >gi|325119980|emb|CBZ55533.1| Peptide deformylase, related [Neospora caninum Liverpool] Length = 374 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 2/151 (1%) Query: 3 KKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 KK +++ P P+LR S P + + + + + +MY GIGLAA Q+G+ +++V Sbjct: 223 KKEVLVAPHPLLRLPSHPEADWMAKETKAIARELFAIMYRDGGIGLAAPQVGLSLQMIVW 282 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + VF+NP+I++ S EGCLS+P A V+R VRY Sbjct: 283 NPTGGFREVSQERVFLNPRILSLSGPLVSDVEGCLSVPGVFAPVERPMHARVRYTSLEGD 342 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + GL A +QHE+DHL+GILF+D Sbjct: 343 QHEVNLSGLEARVVQHEIDHLHGILFVDRAK 373 >gi|258593594|emb|CBE69935.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [NC10 bacterium 'Dutch sediment'] Length = 176 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + P+LR+V+ P+ ++I LID+M+E M +G+G+AA Q+ V + Sbjct: 1 MAILKVARLGHPVLRQVAPPVRPETIREAEIQRLIDDMIETMREYEGVGIAAPQVHVSKQ 60 Query: 58 LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + VI+ + + + V IN ++ + + EGCLS+ D+R R + Sbjct: 61 IAVIESKGNTRYPDAPEIPLTVLINLEVTPLAPELEDDWEGCLSLIDFRGQTPRYQQVRA 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +D + A G A LQHE DHL G LFID + L+ + S+ + Sbjct: 121 KALDREGRSFEFVATGFHARVLQHERDHLLGKLFIDRMKSLETLSYLPEYSRYWK 175 >gi|188996826|ref|YP_001931077.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931893|gb|ACD66523.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] Length = 169 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M K ++ +PD L+R S + + I+ + MY++ G +G+AA Q+ R + Sbjct: 1 MEKLEILKYPDERLKRKSIEVVDFGKEFKEFIEKLTYTMYNSPGGVGIAAPQVNNPIRTI 60 Query: 60 VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++D H+ N + V NPKI+ + +++EGC+S+PDY +VKR +I V Sbjct: 61 IVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEI-IFREGCMSVPDYTGNVKRFYYIKVEA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N +G A +QHE+DHL G +FI+ + K D+ +K+ K Sbjct: 120 QDINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKVYK 168 >gi|320327457|gb|EFW83470.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] gi|330877286|gb|EGH11435.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 179 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E ++S G+GLAA QIG+ +L Sbjct: 1 MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETIHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I S EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|225018698|ref|ZP_03707890.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum DSM 5476] gi|224948426|gb|EEG29635.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum DSM 5476] Length = 152 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ D ILR+ R + N + +L+D++ E M+ DG+GLAA Q+GVL R VV Sbjct: 1 MAIRTIVVDDDSILRKKCREVIDYNKRLHDLLDDLAETMHKADGVGLAAPQVGVLRRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +NP+II S EGCLS P+ V+R +TV+ D + + Sbjct: 61 IDVGE-----GVIELVNPEIIKKSGS-QNGAEGCLSYPNEFGMVERPMQVTVKAFDRDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + LLA + HE+DHL+GI+F D + + Sbjct: 115 EFKLIGKELLARAICHEVDHLDGIVFKDLATEM 147 >gi|53804337|ref|YP_113830.1| peptide deformylase [Methylococcus capsulatus str. Bath] gi|53758098|gb|AAU92389.1| polypeptide deformylase [Methylococcus capsulatus str. Bath] Length = 191 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V +P+LR+ +RP+ ++ + LI +M E M G+GLAA QIG +L VI+ Sbjct: 10 IVQAGEPVLRQRARPLSPEEIRSAAVQALIGHMRETMRDAPGVGLAAPQIGQGLQLAVIE 69 Query: 63 LQDHAHR-----------KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 + HR + P+ V +NP+I+ S++ V+ EGCLS+ + A V+R+ Sbjct: 70 DRADYHRGLSAEELAARGREPVPFHVIVNPEIVARSEETDVFHEGCLSLAGFSARVERAR 129 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ V +D + Q I A G A LQHE+DHL+G L+ID + Sbjct: 130 WVRVSCLDHRGEPQTIEASGWYARILQHEIDHLHGRLYIDRMDP 173 >gi|209523408|ref|ZP_03271963.1| peptide deformylase [Arthrospira maxima CS-328] gi|209496150|gb|EDZ96450.1| peptide deformylase [Arthrospira maxima CS-328] Length = 177 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 8 IFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR ++P+ I + I +LID+++ + +G+G+AA Q+G R++VI + Sbjct: 9 QLGDPVLRDHAQPVANIWEARIQSLIDDLMATVIEKNGVGIAAPQVGYSDRILVIASRPS 68 Query: 67 -----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 A P INPKII S++ EGCLS+P R V R I V Y + Sbjct: 69 IRYPAAPEMEPTAMINPKIIGKSEEMVADWEGCLSVPGIRGIVNRYQAIEVEYTSRDGHL 128 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q G +A QHE DHL GI+F+D ++ M + K + Sbjct: 129 QHRELTGFVARIFQHEYDHLEGIIFLDRVADSHSMMTEDEYQKRI 173 >gi|172041401|ref|YP_001801115.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109] gi|171852705|emb|CAQ05681.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109] Length = 267 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 72/179 (40%), Gaps = 29/179 (16%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN--------SDIMNLIDNMLEVMYSTDGIGLAAVQI 52 M P+VI DP+L + + + + + I +M E M G+GLA Q+ Sbjct: 45 MTVLPIVIAGDPVLHNPTNKVGEPDLDANGVPTEEFKKFIADMHETMDRAHGVGLAGNQV 104 Query: 53 GVLYRLVVIDLQDHAHRKN----------------PMVFINP-----KIITFSDDFSVYQ 91 GV RL V D INP +I D + Sbjct: 105 GVAKRLFVYHCPDIDGPNGEQRTEEEIAAQGGPMRRGTVINPVLETSEIPETMPDEYEDE 164 Query: 92 EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 EGCLS+P Y R+ + V +D N + + G A CLQHE+ HL+G L+ D L Sbjct: 165 EGCLSVPGYSFPTGRADWARVTGIDENGEPVTVEGYGFFARCLQHEVGHLDGFLYTDTL 223 >gi|289625972|ref|ZP_06458926.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647973|ref|ZP_06479316.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250] gi|298488188|ref|ZP_07006225.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157467|gb|EFH98550.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869369|gb|EGH04078.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 179 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I + EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLNPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + Q A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPDGQRIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|330949875|gb|EGH50135.1| peptide deformylase [Pseudomonas syringae Cit 7] Length = 179 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIHNILKMGDERLLRIAPPVPADMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + INP I S EGCLS+P R V R I Sbjct: 61 VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q + A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPQGQPIVRVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|254495945|ref|ZP_05108853.1| peptide deformylase [Legionella drancourtii LLAP12] gi|254354823|gb|EET13450.1| peptide deformylase [Legionella drancourtii LLAP12] Length = 179 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIM------NLIDNMLEVMYSTDGIGLAAVQIGV 54 M + +V + L S P+ + I LI NM + M + G+G+AA QIG Sbjct: 1 MTIQTVVKMGNKQLGIPSEPVVDFDPAIRSYPELTELIQNMKDTMDAKGGVGIAAPQIGY 60 Query: 55 LYRLVVIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 R+++ + + N + INP SD+ EGCLS+P R V R Sbjct: 61 NKRVIMFGFEKNKRYPNEKPVPFTILINPIYQIMSDELVEEWEGCLSVPGLRGLVPRYKK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I D + A A +QHE DHL+G+LF L ++ +++ Sbjct: 121 IEYSGYDPEGKLITRVAADFHARIIQHECDHLDGVLFPYRLKDIRFFGYEEELE 174 >gi|229815473|ref|ZP_04445805.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM 13280] gi|229809006|gb|EEP44776.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM 13280] Length = 178 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ PDP LR+ +E+INSD+ L++ M M+ G GLAA Q+G +L + Sbjct: 1 MEINGIVLSPDPRLRQECAEVEEINSDLRALVERMKVQMFENGGCGLAAPQVGETIQLAI 60 Query: 61 IDLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D + + + +P V INP I+ SD+ Y EGCLSIP +++R + V + Sbjct: 61 VDTEYTSEKDYDPYVLINPVIVEQSDNLVPYNEGCLSIPGINCEIRRPDHVVVEAYNLEG 120 Query: 120 QHQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + A G L CLQHE+DHL+G + L +R ++ Sbjct: 121 ECIRYEAAGDLFCVCLQHEIDHLHGKTMFERLLPQQRMHAMRQYQ 165 >gi|77460570|ref|YP_350077.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] gi|77384573|gb|ABA76086.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] Length = 179 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++ LID+M + M S G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAPPVPAEMLDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + INP I S EGCLS+P R V R I Sbjct: 61 VIFGFEHSERYPDAEAVPQTILINPLITPLSPLMEEGFEGCLSVPGLRGAVDRYQQIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D + + A G A +QHE DHL G L+ ++ + T+ M Sbjct: 121 GVDPKGEPIVRVASGFHARVVQHECDHLIGRLYPSRITDFSKFGFTEVM 169 >gi|167037732|ref|YP_001665310.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256752269|ref|ZP_05493132.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1] gi|320116147|ref|YP_004186306.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687663|sp|B0KA11|DEF_THEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166856566|gb|ABY94974.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748837|gb|EEU61878.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1] gi|319929238|gb|ADV79923.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 159 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 64/153 (41%), Positives = 95/153 (62%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ ++P+ +INS I+ ++++M + MY DG+GLAA QIGVL RLVV Sbjct: 1 MAIRYVRKIGDEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I+ + + V EGCLSIP +VKR + V+Y+D + Sbjct: 61 IDVGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHLNG+LFID R Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147 >gi|148259391|ref|YP_001233518.1| peptide deformylase [Acidiphilium cryptum JF-5] gi|146401072|gb|ABQ29599.1| peptide deformylase [Acidiphilium cryptum JF-5] Length = 209 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 11/178 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M L P+L + P+ + +I L+ +M E + G+GLAA Q+ V RL Sbjct: 26 MALLKLARLGHPVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLF 85 Query: 60 VIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + + H + INP+++ + EGCLSIP A V R+A +T+ Sbjct: 86 IYRVPESRAGGGEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTL 145 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 R +D A G A +QHE DHL+GIL+ L + ++ + RD Sbjct: 146 RAIDATGAPFSREAAGFHARVIQHEADHLDGILYPQRLRDPRLMGFN---EEVARFRD 200 >gi|284052203|ref|ZP_06382413.1| peptide deformylase [Arthrospira platensis str. Paraca] gi|291566279|dbj|BAI88551.1| peptide deformylase [Arthrospira platensis NIES-39] Length = 177 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 7/173 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + DP+LR ++P+ I I +LID+++ + +G+G+AA Q+G R+ Sbjct: 1 MADILAVTQLGDPVLRDHAQPVANIWEPRIQSLIDDLMATVIEKNGVGIAAPQVGYSDRI 60 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +VI + A P INPKII SD+ EGCLS+P R V R I V Sbjct: 61 LVIASRPSIRYPAAPEMEPTAMINPKIIGKSDEMVADWEGCLSVPGIRGIVNRYQAIEVE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Y + + G +A QHE DHL GI+F+D ++ M + K + Sbjct: 121 YTSRDGHLEHRELTGFVARIFQHEYDHLEGIIFLDRVADSHSMMTEDEYQKRI 173 >gi|318061364|ref|ZP_07980085.1| peptide deformylase [Streptomyces sp. SA3_actG] gi|318077742|ref|ZP_07985074.1| peptide deformylase [Streptomyces sp. SA3_actF] Length = 242 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 3/158 (1%) Query: 10 PDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + +L R ++ L+ +M MY +G GLAA Q+ V RL V D D Sbjct: 60 GEEVLARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEG 119 Query: 69 RKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 ++ +NP I + EGCLS+P + ++ R+ VR +D + + I Sbjct: 120 ARHVGHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEG 179 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G A CLQHE DHLNGIL++D L R R + M++ Sbjct: 180 TGYFARCLQHETDHLNGILYVDRLGRRARRTVLTDMAE 217 >gi|307264799|ref|ZP_07546361.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1] gi|306920057|gb|EFN50269.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1] Length = 159 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 94/153 (61%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L++ ++P+ +IN I+ ++++M + MY DG+GLAA QIGVL RLVV Sbjct: 1 MAIRYIRKNGDEVLKKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I+ + + V EGCLSIP +VKR + V+Y+D + Sbjct: 61 IDVGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHLNG+LFID R Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147 >gi|303239362|ref|ZP_07325890.1| peptide deformylase [Acetivibrio cellulolyticus CD2] gi|302593148|gb|EFL62868.1| peptide deformylase [Acetivibrio cellulolyticus CD2] Length = 155 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D +L +V R ++ I++ I+ L+ +M + MY+ +G+GLAA Q+GVL RLVV Sbjct: 1 MALRNVRIDGDDVLGKVCRQVDVIDNRILILLKDMADTMYAENGVGLAAPQVGVLKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INPKI+ + + EGCLS+P+ +V R + V ++ + Sbjct: 61 IDVGE-----GLIELINPKIVKEEGE-VLDIEGCLSVPELVGEVVRPKKVWVEALNTKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + LLA HE+DHL+GILF +L K Sbjct: 115 KICLEGEDLLARAFCHEIDHLDGILFKSRAIKLINKKELK 154 >gi|187251316|ref|YP_001875798.1| N-formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191] gi|238058210|sp|B2KD65|DEF_ELUMP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|186971476|gb|ACC98461.1| N-Formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191] Length = 176 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 8/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +V + + ILR+ +P++ + + ++ +M + S G GL+A QIG+ +R+ Sbjct: 1 MAVRRIVKYGEDILRQKLKPVDFKTLEPQLDAILQDMHDTCMSFQGAGLSANQIGLTHRI 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +I + + + V INP I++ +EGCLS+P +++R+ I V Sbjct: 61 AMIFIPEKTPKGEAQKFKRYVVINPVIVSKKG-CVTDEEGCLSLPGLWVEIERAESIVVH 119 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ I+A G LA LQHE+DHL+G +FIDH + I K++ KL + Sbjct: 120 CLNEKGLPVEIHAKGFLAKALQHEIDHLDGKIFIDHADPKLKPEIKKELKKLSK 173 >gi|289178547|gb|ADC85793.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12] Length = 163 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 6/151 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + PDP+LR PI +I + NL+ ++L+ + G++A QIGV R Sbjct: 5 AIREIRVVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFSY 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ +NP + + EGCLS+P KR+ + VR MD + Sbjct: 65 NIDGKIGY-----VLNPVLEETRGE-QYGDEGCLSLPKLWYKTKRADYARVRGMDLDGNE 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ DG++ LQHE DHL+G L+ID L + Sbjct: 119 IVLEGDGIMGRMLQHETDHLDGHLYIDRLEK 149 >gi|222104825|ref|YP_002539314.1| peptide deformylase [Escherichia coli] gi|8571125|gb|AAF76758.1|AF218073_7 unknown [Escherichia coli] gi|221589252|gb|ACM18249.1| peptide deformylase [Escherichia coli] Length = 150 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 89/134 (66%), Gaps = 3/134 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCL 134 + ADGLLA C+ Sbjct: 118 PFELEADGLLAICI 131 >gi|326489213|dbj|BAK01590.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 259 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 19/164 (11%) Query: 7 VIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--- 60 V DP+L ++ + + I ++ID M+ VM G+GLAA QIGV +++V Sbjct: 74 VKAGDPVLHEPAQEVSPGDVPSEKIQDIIDQMIAVMRKAPGVGLAAPQIGVPLKIIVLED 133 Query: 61 ------------IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 ID QD + +V INPK+ S + + EGCLS+ YRA V+R Sbjct: 134 TQEYISYVSKEDIDAQDRCP-FDLLVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHL 192 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V +D N + + A G A LQHE DHL G L++D + Sbjct: 193 DVEVSGLDRNGRPMKVEASGWQARILQHECDHLEGTLYVDKMVP 236 >gi|224054132|ref|XP_002298107.1| peptide deformylase [Populus trichocarpa] gi|222845365|gb|EEE82912.1| peptide deformylase [Populus trichocarpa] Length = 299 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L +R ++ +I S+ I +ID+M++VM G+GLAA QIG+ R++V+ Sbjct: 112 DIVKAGDPVLHEPAREVDPKEIGSERIQKIIDDMVKVMRMAPGVGLAAPQIGIPLRIIVL 171 Query: 62 DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + P +V +NPK+ S+ + + EGCLS+ +RA V+R Sbjct: 172 EDTAEYIGYAPKNETKAQDRRPFDLLVIVNPKLKKKSNRTAFFFEGCLSVDGFRAIVERH 231 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V + + Q + A G A LQHE DHL G L++D + Sbjct: 232 LDVEVIGLSRDGQPIKVDASGWQARILQHECDHLEGTLYVDKMVP 276 >gi|237798881|ref|ZP_04587342.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021735|gb|EGI01792.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 179 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L RV+ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRNILKMGDERLLRVAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + A + +NP I + EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPEAEAVPQTILLNPLITPLGPNMEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + A G A +QHE DHL G L+ ++ + M Sbjct: 121 GFDPDGLPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169 >gi|172038579|ref|YP_001805080.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142] gi|171700033|gb|ACB53014.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142] Length = 171 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 9/159 (5%) Query: 2 VKKP---LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 + KP + +PILR+ ++ + I + + ID +L + G+G+AA Q+ YR Sbjct: 1 MIKPNLKIAQVGNPILRQQAQCVTDITDDKLQEFIDTLLTIAMDAKGVGIAAPQVSQSYR 60 Query: 58 LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L ++ + + P V INP++++ S + EGCLS+P R V R ITV Sbjct: 61 LFMVCSHPNPRYPDAPLMEPTVMINPRLVSHSKEMVKGWEGCLSVPRIRGLVPRYQTITV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+D Q + QHELDHLNGILFID + Sbjct: 121 EYLDRYGQLHQQELTDFIGRIFQHELDHLNGILFIDRID 159 >gi|153875918|ref|ZP_02003500.1| Polypeptide deformylase [Beggiatoa sp. PS] gi|152067618|gb|EDN66500.1| Polypeptide deformylase [Beggiatoa sp. PS] Length = 174 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M L+I+PD L++VS + + + + ++ E M + G +G+AA Q+G R+V Sbjct: 1 MALLDLLIYPDVRLKQVSASVRVFDEKLHAFLTDLEETMRAGLGSVGIAAPQVGYFERIV 60 Query: 60 VIDLQDHAHRKNPMVFI--NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +ID+ K+ I NP+I + F V +EGC+S+PDY +V R+ I + +D Sbjct: 61 IIDVSSKPKIKHHGHLILVNPEITQWKG-FEVGREGCMSVPDYTGNVIRAKKIHLMALDE 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 N Q +G A +QHE+DHL+G+LF+D L + D+ ++ Sbjct: 120 NGVQQEYDMEGYEARAVQHEIDHLDGLLFLDRLVSRRYDLFQRR 163 >gi|261749262|ref|YP_003256947.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497354|gb|ACX83804.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 180 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 7/157 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + P+V++ +PILR+ I+ + I L+ +M E ++ GIGLAA QIG RL Sbjct: 1 MILPIVVYGNPILRKKCIDIDIYSCRKKIQELVKDMFETIHKVKGIGLAAPQIGKNIRLF 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +++ VFIN +I+ + EGCLSIP VKR + +++ Y Sbjct: 61 IVETPYLLENGKDIDNYKEVFINARILKIHGKEYEFNEGCLSIPGIMGYVKRKSHVSIEY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D N + + G+ A +QHE DH+ G LFID+ S Sbjct: 121 YDHNWKKKKETLKGICARVIQHEYDHMEGKLFIDYFS 157 >gi|332295842|ref|YP_004437765.1| Peptide deformylase [Thermodesulfobium narugense DSM 14796] gi|332178945|gb|AEE14634.1| Peptide deformylase [Thermodesulfobium narugense DSM 14796] Length = 165 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 8/167 (4%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 K+ ++ P+ +LR+ S P+ + + ++ +L++ M +M S +G+GLAA Q+G L RL + Sbjct: 4 KRKIITHPNSLLRKRSLPVLQFDKNLESLVEEMEYLMISNNGVGLAAPQVGELSRLFIYK 63 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + D N V INP+II V EGCLS+P V+R+ + V+ + Sbjct: 64 IDD-----NLQVVINPEIIEK-VGSEVDVEGCLSVPGVFGPVERAFKVIVQAQNIYGDTI 117 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK--RDMITKKMSKLVQ 167 I+ +G A +QHE DHLNG LFID L+ + K+ KL + Sbjct: 118 ILNKEGYEARVIQHEFDHLNGDLFIDKAEYLETAEERAKKQKEKLEK 164 >gi|153939969|ref|YP_001391592.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|152935865|gb|ABS41363.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|295319620|gb|ADF99997.1| peptide deformylase [Clostridium botulinum F str. 230613] Length = 150 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + + D ILR+ S+ +E ++ I ++++M + MY+T +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLVDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|319793878|ref|YP_004155518.1| peptide deformylase [Variovorax paradoxus EPS] gi|315596341|gb|ADU37407.1| peptide deformylase [Variovorax paradoxus EPS] Length = 179 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R+++P+ + ++ L+ +M E M++ +G GLAA QIGV +LV Sbjct: 1 MAIREILKMGDPRLLRIAQPVAAFDTDELHLLVRDMFETMHAVNGAGLAAPQIGVDQQLV 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A V +NP I +D EGCLS+P R V R A I Sbjct: 61 IFGTDIVNPRYPDAPPVPRTVLLNPVITPIGEDEEEGWEGCLSVPGLRGVVPRFANIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A G A +QHE+DHL G L+ + R T+ + Sbjct: 121 GFDPYGDPIDRVASGFHARVVQHEVDHLLGKLYPMRVRDFSRFGYTEVL 169 >gi|163853348|ref|YP_001641391.1| peptide deformylase [Methylobacterium extorquens PA1] gi|163664953|gb|ABY32320.1| formylmethionine deformylase [Methylobacterium extorquens PA1] Length = 176 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +PL+ +PD L R + P+ + L ++L+ + + +GL A+ IG Sbjct: 1 MPIRPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRP 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R+VVI LQ V+++P + S + + + EG +S+P V+R A + VRY Sbjct: 61 ERVVVIRLQPDEPHA---VYVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL Sbjct: 118 DLDGAEHEEKAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167 >gi|333027512|ref|ZP_08455576.1| putative peptide deformylase [Streptomyces sp. Tu6071] gi|332747364|gb|EGJ77805.1| putative peptide deformylase [Streptomyces sp. Tu6071] Length = 213 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 10 PDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + +L R ++ L+ +M MY +G GLAA Q+ V RL V D D Sbjct: 31 GEEVLARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEG 90 Query: 69 RKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 ++ +NP I + EGCLS+P + ++ R+ VR +D + + I Sbjct: 91 ARHVGHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEG 150 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G A CLQHE DHLNGIL++D L+R R + M++ Sbjct: 151 TGYFARCLQHETDHLNGILYVDRLARRARRTVLTDMAE 188 >gi|94986391|ref|YP_605755.1| peptide deformylase [Deinococcus geothermalis DSM 11300] gi|94556672|gb|ABF46586.1| Peptide deformylase [Deinococcus geothermalis DSM 11300] Length = 216 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 24/190 (12%) Query: 3 KKPLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIG 53 P+ ++ DP+LRR +RP++ ++ + + + MLE M+ G+GLAA Q+G Sbjct: 7 VYPIRLYGDPVLRRKARPLQATDTLTVPGFGPQSVREVANTMLETMFEARGVGLAAPQVG 66 Query: 54 VLYRLVVI-------------DLQDHAHRKNPMVFINPKIITFSDDFS-VYQEGCLSIPD 99 + R+ V D+ + V +NP + YQEGCLSIP Sbjct: 67 LPVRMFVAVEYEDDEEEQEGRDVPLKSRVLREFVMLNPVLTVIDKKKDRSYQEGCLSIPG 126 Query: 100 YRAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + V R+ + VRY D + Q + + AD LA QHE DHL+G+ F+D L + Sbjct: 127 IYEEGVARARAVQVRYTDLDGQERTLEADDYLARVFQHETDHLDGVFFLDRLPPEVTEDH 186 Query: 159 TKKMSKLVQL 168 K+++ + + Sbjct: 187 RKELAAMQRQ 196 >gi|168180757|ref|ZP_02615421.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|182668503|gb|EDT80482.1| peptide deformylase [Clostridium botulinum NCTC 2916] Length = 150 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+T +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCL+IP+ + R A +TV+ ++ N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLNIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|84622632|ref|YP_450004.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578324|ref|YP_001915253.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] gi|242556373|pdb|3DLD|A Chain A, Crystal Structure Of Peptide Deformylase, Xoo1075, From Xanthomonas Oryzae Pv. Oryzae Kacc10331 gi|84366572|dbj|BAE67730.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522776|gb|ACD60721.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 171 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ + + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A N +I SD+ EGCLSIP RA + R +I R Sbjct: 61 FGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158 >gi|295395930|ref|ZP_06806115.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] gi|294971203|gb|EFG47093.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] Length = 164 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DP+LR V P+ + + L ++L+ +AA QIGV R Sbjct: 1 MANRTIRTFGDPVLRTVCEPVTQFGESTVALAQDLLDTAAPEGRAAVAAPQIGVAVRAFG 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 DL V NP+++T + EGCLS+P R F TV +D + Q Sbjct: 61 YDLHGRRG-----VVFNPEVVTR-GERRDIDEGCLSVPGLFFPTPRYEFATVHGVDEHGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + DG+ A LQHE DHLNG++++ L +R +++ + Sbjct: 115 PIEVSGDGVFAQMLQHETDHLNGVVYVQTLPSERRKEAMRQIRQ 158 >gi|306520944|ref|ZP_07407291.1| peptide deformylase 2 [Clostridium difficile QCD-32g58] Length = 155 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 80/128 (62%), Gaps = 6/128 (4%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 + I+ L+D+M E MY DG+GLAA Q+G+L R+VVID+ + + INP+II S Sbjct: 34 DEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVVIDIGE-----ELIELINPEIIETS 88 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + + +EGCLS+ +V+R ++ VR ++ N + + + LLA HE+DHL+GI Sbjct: 89 GE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGETIELEGEELLARAFCHEIDHLDGI 147 Query: 145 LFIDHLSR 152 LF+D + + Sbjct: 148 LFVDKIEK 155 >gi|268611639|ref|ZP_06145366.1| peptide deformylase [Ruminococcus flavefaciens FD-1] Length = 153 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L +V +P++K + + L+D+M E + G+GLAA QIG+ R+ + Sbjct: 1 MALRKILTDKDESLHKVCKPVDKFDEKLAVLLDDMHETLDKAQGLGLAAPQIGLCRRIFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + L++ + INP++ V QEGCLS P+ V R ++ D N Sbjct: 61 MHLEEGS-----FECINPEVTQKEGKQRV-QEGCLSCPNVWGYVTRPMKCHLKAQDRNGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 +GL A C HE DHL+G +F + Sbjct: 115 WFERDFEGLGAQCTCHENDHLDGHVFTE 142 >gi|37521298|ref|NP_924675.1| peptide deformylase [Gloeobacter violaceus PCC 7421] gi|35212295|dbj|BAC89670.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421] Length = 275 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 17/166 (10%) Query: 3 KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 +V DP+LR ++P+ E + I LI M E M G+GLAA Q+GV +LV Sbjct: 93 VYEIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLV 152 Query: 60 VI-DLQDHAHR----------KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 VI D ++ R + P+ V INP + ++ +V+ EGCLSIP Y+ V Sbjct: 153 VIEDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVA 212 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R+ + V +D A +I A G A LQHE+DHLNG+L +D + Sbjct: 213 RARVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMD 258 >gi|226357360|ref|YP_002787100.1| peptide deformylase [Deinococcus deserti VCD115] gi|226319350|gb|ACO47346.1| putative peptide deformylase (polypeptide deformylase) (PDF) [Deinococcus deserti VCD115] Length = 220 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 24/189 (12%) Query: 3 KKPLVIFPDPILRRVSRP--------IEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIG 53 P+ ++ DP+LRR +RP + + + + D MLE M+ G+GLAA Q+G Sbjct: 10 IYPIRLYGDPVLRRKARPLQHTDMLTVPGFDPQTVRQVADTMLETMFEARGVGLAAPQVG 69 Query: 54 VLYRLVVI-------------DLQDHAHRKNPMVFINPKIITFSDDFS-VYQEGCLSIPD 99 + R+ V D + V +NP + YQEGCLSIP Sbjct: 70 LPVRMFVAVEYEDDEEENEGQDTPLKSRVLREFVMLNPVLSVLDKKKDRSYQEGCLSIPG 129 Query: 100 YRAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + V R+ I VRY D + + I AD LA QHE DHL+GI F+D L + Sbjct: 130 IYEEGVSRARAIQVRYTDLDGAQRTIQADDYLARVFQHEADHLDGIFFLDRLPPEVTEDY 189 Query: 159 TKKMSKLVQ 167 +++ + + Sbjct: 190 RRELLAMQR 198 >gi|120611762|ref|YP_971440.1| peptide deformylase [Acidovorax citrulli AAC00-1] gi|120590226|gb|ABM33666.1| peptide deformylase [Acidovorax citrulli AAC00-1] Length = 200 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 7/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ D L R +RP+ + ++ L+ +M + M + +G GLAA QIGV ++V Sbjct: 22 MAIHDILKMGDERLLRTARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVV 81 Query: 60 VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + ++ R P V +NP+I + EGCLS+P R V R + I R Sbjct: 82 IFGSEERNPRYPDRPLVPPTVLVNPRITPLGGEEEEDWEGCLSVPGLRGVVPRWSRIHYR 141 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + +G A +QHE DHL G L+ + R Sbjct: 142 GFDEHGAPIDRTVEGFHARVVQHECDHLVGKLYPMRIRDFSR 183 >gi|166713383|ref|ZP_02244590.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 171 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ + + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A N +I S++ EGCLSIP RA + R +I R Sbjct: 61 FGFEASERYPEAPAVPLTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158 >gi|78101135|pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As Precipitant gi|78101136|pdb|1ZXZ|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As Precipitant gi|78101137|pdb|1ZY0|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-6000 gi|78101138|pdb|1ZY0|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-6000 gi|78101139|pdb|1ZY1|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a) In Complex With Met-Ala-Ser gi|78101140|pdb|1ZY1|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a) In Complex With Met-Ala-Ser Length = 197 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 17/169 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +V DP+L +R ++ +I S+ I +ID+M++VM G+GLAA QIGV R Sbjct: 1 MDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLR 60 Query: 58 LVVID--------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 ++V++ L + MV +NP + S+ +++ EGCLS+ +RA Sbjct: 61 IIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAA 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+R + V D + + A G A LQHE DHL+G L++D + Sbjct: 121 VERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 169 >gi|254518787|ref|ZP_05130843.1| peptide deformylase [Clostridium sp. 7_2_43FAA] gi|226912536|gb|EEH97737.1| peptide deformylase [Clostridium sp. 7_2_43FAA] Length = 150 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + +F ILR+ S+ + ++ I ++++M + MY+T +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFGGEILRKRSKEVLVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NP+II + EGCL+ P+ +KR A +T++ ++ Sbjct: 61 VIDMG-----QGLIKLVNPRIIKK-EGIQEVIEGCLNYPNRWGKLKRPAKVTIQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL+GILF D ++ Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLDGILFTDFVTE 147 >gi|221066139|ref|ZP_03542244.1| peptide deformylase [Comamonas testosteroni KF-1] gi|220711162|gb|EED66530.1| peptide deformylase [Comamonas testosteroni KF-1] Length = 179 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 7/166 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R+++P+ + ++D ++L+ L M++ +G GLAA QIG ++V Sbjct: 1 MTVRAILKMGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMV 60 Query: 60 VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V + R V INP I ++ + EGCLS+P RA V R + + Sbjct: 61 VFGSGEPNPRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWSKVRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D DG A +QHE DHL G L+ + + T Sbjct: 121 GFDLYGDPIDRTVDGFHARVVQHECDHLWGKLYPMRVRDFSQFGFT 166 >gi|308234578|ref|ZP_07665315.1| peptide deformylase [Atopobium vaginae DSM 15829] Length = 183 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 92/170 (54%), Gaps = 8/170 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 K +V P IL+ V P+++I +I +L +M EVMY+TDG GLAA QIG RLVVI Sbjct: 6 AYKEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVI 65 Query: 62 DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + RK P V +NPKI+ + EGCLS P VKR + + ++ + Sbjct: 66 DCEWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGD 125 Query: 121 HQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A G LLA CLQHE DHL G+ DHL + KKM KL + + Sbjct: 126 LIRYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 169 >gi|302518710|ref|ZP_07271052.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|302427605|gb|EFK99420.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 213 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 10 PDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + IL R ++ L+ +M MY +G GLAA Q+ V RL V D D Sbjct: 31 GEEILARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEG 90 Query: 69 RKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 ++ +NP I + EGCLS+P + ++ R+ VR +D + + I Sbjct: 91 ARHVGHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEG 150 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G A CLQHE DHLNGIL++D L+R R + M++ Sbjct: 151 TGYFARCLQHETDHLNGILYVDRLARRARRTVLTDMAE 188 >gi|148273059|ref|YP_001222620.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830989|emb|CAN01934.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 163 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +F DP+L+ VS I +I+ + L++++L+ + G+AA QIGV R Sbjct: 1 MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP I + + EGCLS+P R + +D + Sbjct: 61 YNVGPAFGY-----VLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVITGIDLEGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I G+LA QHE+DHL+G++++D L + +R K++ + Sbjct: 116 PVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159 >gi|126649676|ref|ZP_01721912.1| peptide deformylase [Bacillus sp. B14905] gi|126593395|gb|EAZ87340.1| peptide deformylase [Bacillus sp. B14905] Length = 176 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 90/165 (54%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P +L + +IN +++ L+D++ + M DG+G+AA QI + R+ + Sbjct: 13 MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L ++ + +NP +I D + EGCLS P +V+R +++ + D + Sbjct: 73 VEL---GEERDILEMVNPTVIET-DGAEIDIEGCLSFPGLYGEVERPSYVKIEACDREGR 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + A G A + HE+DHL+G+LF S++KR + +++ ++ Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFD---SKIKRVITAEELEEM 170 >gi|160900287|ref|YP_001565869.1| peptide deformylase [Delftia acidovorans SPH-1] gi|160365871|gb|ABX37484.1| peptide deformylase [Delftia acidovorans SPH-1] Length = 179 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV++P+ + ++D ++L+ + L M++ +G GLAA QIGV ++V Sbjct: 1 MTVRTILKMGDPRLLRVAQPVTEFDTDELHLLLSDLLDTMHAANGAGLAAPQIGVDLQMV 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V A V INP I +D + EGCLS+P R V R I Sbjct: 61 VFGSGLPNPRYPDAPVVPRTVLINPVITPMGEDEHLDWEGCLSVPGMRGMVPRWNHIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D DG A +QHE DHL G L+ + + T Sbjct: 121 GFDVFGDAIDRTVDGFHARVVQHECDHLWGKLYPMRMRDFSQFGFT 166 >gi|326402613|ref|YP_004282694.1| peptide deformylase [Acidiphilium multivorum AIU301] gi|325049474|dbj|BAJ79812.1| peptide deformylase [Acidiphilium multivorum AIU301] Length = 184 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 11/178 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M L P+L + P+ + +I L+ +M E + G+GLAA Q+ V RL Sbjct: 1 MALLKLARLGHPVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLF 60 Query: 60 VIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + + H + INP+++ + EGCLSIP A V R+A +T+ Sbjct: 61 IYRVPESRAGGGEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTL 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 R MD A G A +QHE DHL+GIL+ L + ++ + RD Sbjct: 121 RAMDATGAPFSREAAGFHARVIQHEADHLDGILYPQRLRDPRLMGFN---EEVARFRD 175 >gi|328944367|ref|ZP_08241830.1| peptide deformylase [Atopobium vaginae DSM 15829] gi|327491082|gb|EGF22858.1| peptide deformylase [Atopobium vaginae DSM 15829] Length = 187 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 92/170 (54%), Gaps = 8/170 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 K +V P IL+ V P+++I +I +L +M EVMY+TDG GLAA QIG RLVVI Sbjct: 10 AYKEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVI 69 Query: 62 DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + RK P V +NPKI+ + EGCLS P VKR + + ++ + Sbjct: 70 DCEWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGD 129 Query: 121 HQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A G LLA CLQHE DHL G+ DHL + KKM KL + + Sbjct: 130 LIRYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 173 >gi|206560457|ref|YP_002231221.1| peptide deformylase [Burkholderia cenocepacia J2315] gi|198036498|emb|CAR52395.1| putative deformylase [Burkholderia cenocepacia J2315] Length = 177 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V++P+E+ + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEVAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INPKI D EGCLS+P R V R A + Sbjct: 61 FGFGNNNRYPDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A+G A +QHE DHL G L+ ++ R T+ + Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167 >gi|296393247|ref|YP_003658131.1| peptide deformylase [Segniliparus rotundus DSM 44985] gi|296180394|gb|ADG97300.1| peptide deformylase [Segniliparus rotundus DSM 44985] Length = 198 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 13/163 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L R + + ++++L+++M + + ++ G+GLAA QIGV Sbjct: 1 MTVLPIRITGDPVLHRPTELVRLTAEGAAPPEVVSLLEDMYDTLKASHGVGLAATQIGVG 60 Query: 56 YRLVVIDLQDHAHRKN---PMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRS 107 RL V D D K INP + T + D +EGCLS+P R R+ Sbjct: 61 LRLFVYDCPDDTSGKRVSRKGEIINPVLQTSALPEGMPDEDEDEEGCLSVPGLRFPTGRA 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + +D + I +GL A LQHE+ HL+G L++D L Sbjct: 121 VWAKATGVDRTGKPVEIEGEGLFARMLQHEVGHLDGKLYVDML 163 >gi|315640287|ref|ZP_07895404.1| peptide deformylase [Enterococcus italicus DSM 15952] gi|315483949|gb|EFU74428.1| peptide deformylase [Enterococcus italicus DSM 15952] Length = 163 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 58/149 (38%), Positives = 92/149 (61%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LR+ ++ I+++ +++ L+D+M E M + DG+G+AA QIG ++ V+ Sbjct: 1 MRYPIIIQPDEQLRKPNQEIQELTDELVYLLDDMYETMLAHDGVGIAAPQIGKNLQMAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ ++ INP+II SV+ EGCLSIP V+R+ ITVRY D Sbjct: 61 EVDENDRFD----LINPQIIDRKG-KSVFVEGCLSIPHVFGTVERAEEITVRYYDREGDE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA +QHE+DHLNG+LF D + Sbjct: 116 MEVTAYGYLARAIQHEIDHLNGVLFTDKV 144 >gi|254247880|ref|ZP_04941201.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184] gi|124872656|gb|EAY64372.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184] Length = 177 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L +++P+E+ + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INPK+ + EGCLS+P R V R A + Sbjct: 61 FGFGNNNRYPDAPPVPETVLINPKVEYLPPEMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A+G A +QHE DHL G L+ ++ R T+ + Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167 >gi|54309245|ref|YP_130265.1| polypeptide deformylase [Photobacterium profundum SS9] gi|46913677|emb|CAG20463.1| hypothetical polypeptide deformylase [Photobacterium profundum SS9] Length = 175 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++ +P+LR + + + + L+ ++ ++M S G+G+AA Q+G R + Sbjct: 3 APLEIIQLGNPLLRVPAEALSAVQIETALPLLKSLEQIMLSHQGVGIAAPQVGQPLRAFI 62 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + D HA P + INP+++ S++ EGCLSIP RA V R I VRY+ Sbjct: 63 VASRPNDRYPHAPLMEPTIMINPELLWQSEEMEKDWEGCLSIPGIRAKVNRYTHIRVRYL 122 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + G +A QHELDHLNGI+F+D +L Sbjct: 123 NASGDVIETEFTGFIARIFQHELDHLNGIVFLDRADKL 160 >gi|302540288|ref|ZP_07292630.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302457906|gb|EFL20999.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%) Query: 5 PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V P+LR+ + P + + + L+ M E M++ G+GLAA QIGV RL VI+ Sbjct: 21 PIVSAGLPVLRQAALPYDGQLPDGQLDRLLRAMRETMHNAPGVGLAAPQIGVPLRLAVIE 80 Query: 63 ---------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + P V +NP D + + EGCLS+P ++A V R I + Sbjct: 81 DPAEVATEVREARGRVPQPYRVLVNPSYEPVGDARAAFFEGCLSVPGWQAVVSRPERIRL 140 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R D + G A +QHE DHL+G+L++D Sbjct: 141 RGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176 >gi|83592380|ref|YP_426132.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170] gi|83575294|gb|ABC21845.1| Peptide deformylase [Rhodospirillum rubrum ATCC 11170] Length = 169 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 7/166 (4%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65 P+L ++RP+E + I L+ +M+E + + G+GLAA Q+ V R+++ + + Sbjct: 2 PVLAGIARPVEDPTDPKIHRLVADMIETLADSGGVGLAAPQVHVPLRVMIFHVPANRSTE 61 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 V INP++ ++ EGCLS+P V R + R +D + + Sbjct: 62 AEGAVPLTVLINPQLTPLGEEMVEDWEGCLSLPGLTGLVPRYRSLRYRGVDLDGREVERE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLRD 170 A A +QHE DHL+G+L+ L + +++ K L R+ Sbjct: 122 ARDFHARVVQHEYDHLDGVLYPRRLRDPSQFGFVEEIRKALAANRE 167 >gi|113478377|ref|YP_724438.1| peptide deformylase [Trichodesmium erythraeum IMS101] gi|110169425|gb|ABG53965.1| peptide deformylase [Trichodesmium erythraeum IMS101] Length = 177 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + ILR ++ + I + ++ LIDN++ + T+G+G+AA Q+ + L Sbjct: 1 MEVLQVAQLGNKILRYQAQTVNNILDQNVQQLIDNLIFTVIETNGVGIAAPQVSISDCLF 60 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +I + + N P+ INP++I+ S+D EGCLSIP R V R I V Y Sbjct: 61 IIASRPNIRYPNAPKMEPIAMINPRLISHSEDRVKGWEGCLSIPGIRGLVPRYRVINVEY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLRD 170 + + + +A QHE DHL G++F+D + + + K ++QLR+ Sbjct: 121 TNREGKLERQELTDFVARIFQHEYDHLEGLVFLDRVESTTDLITEDEYQKQIIQLRN 177 >gi|21244235|ref|NP_643817.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306] gi|25452915|sp|Q8PGV2|DEF1_XANAC RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|21109877|gb|AAM38353.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306] Length = 171 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIREIIRMGDKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S+D EGCLSIP RA + R FI R Sbjct: 61 FGFDASERYPEAPAVPRTALANAQIEPLSEDMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A+G A +QHE D+L G L+ + Sbjct: 121 APDGSPIERDAEGFHARVVQHEYDNLVGRLYPSRIENFDTFGFE 164 >gi|291288165|ref|YP_003504981.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] gi|290885325|gb|ADD69025.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] Length = 167 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + ++++PD L+ ++ +EK++ ++ ++++ M + G+AA QIG R+V Sbjct: 1 MAVREVLVYPDTRLKEMAEDVEKLDDHAKQVVRDLIDTMEESGHSTGIAATQIGEKLRIV 60 Query: 60 VIDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V D + +N +V INP+I+ + ++EGC+S+PDY +V R+ I ++Y D Sbjct: 61 VADASKNKKCENNHGRLVLINPEILKWEGMLQ-FREGCMSVPDYTGNVNRARKILIKYND 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 N + ++I A+G A LQHE DHL+G LFID + + D+ +K K Sbjct: 120 ENFEEKVIEAEGFEAVLLQHETDHLDGTLFIDRVISKRTDLFRRKKYK 167 >gi|260906787|ref|ZP_05915109.1| polypeptide deformylase [Brevibacterium linens BL2] Length = 168 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + ++ DP+LR P+ + + L ++++ +AA QIGV R Sbjct: 1 MAERDIRLWGDPVLRSPCAPVTVFDEGLRALAQDLVDTSLPEGRAAVAAPQIGVGVRAFG 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 DL INP+++ + +EGCLS+P R F VR +D Sbjct: 61 YDLDGRTGY-----VINPEVVEVGGELRDIEEGCLSVPGLFFPTPRYEFARVRGVDAENS 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I + A LQHE+ HL+G +++ L + +R K + Sbjct: 116 PVEISGTEVFAQMLQHEVAHLDGQVYVQTLPKERRREAMKAIR 158 >gi|239815924|ref|YP_002944834.1| peptide deformylase [Variovorax paradoxus S110] gi|239802501|gb|ACS19568.1| peptide deformylase [Variovorax paradoxus S110] Length = 179 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 7/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R+++P+ + ++ L+ +M E M + +G GLAA QIGV +LV Sbjct: 1 MAIREILKMGDPRLLRIAQPVAAFDTDELHLLVRDMFETMLAVNGAGLAAPQIGVDQQLV 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A V +NP I D+ EGCLS+P R V R A I Sbjct: 61 IFGTDVVNPRYPDAPPVPRTVLLNPVITPIGDEEEEGWEGCLSVPGLRGVVPRFANIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A G A +QHE+DHL G L+ + R Sbjct: 121 GFDPYGDPIDRVASGFHARVVQHEVDHLLGKLYPMRVRDFSR 162 >gi|39930960|sp|Q7NJV3|DEF1_GLOVI RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 Length = 227 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 17/166 (10%) Query: 3 KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 +V DP+LR ++P+ E + I LI M E M G+GLAA Q+GV +LV Sbjct: 45 VYEIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLV 104 Query: 60 VI-DLQDHAHR----------KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 VI D ++ R + P+ V INP + ++ +V+ EGCLSIP Y+ V Sbjct: 105 VIEDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVA 164 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R+ + V +D A +I A G A LQHE+DHLNG+L +D + Sbjct: 165 RARVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMD 210 >gi|262200670|ref|YP_003271878.1| peptide deformylase [Gordonia bronchialis DSM 43247] gi|262084017|gb|ACY19985.1| peptide deformylase [Gordonia bronchialis DSM 43247] Length = 200 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 13/163 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I +P+L R + P+ ++ +++ L+D+M + M + G+GLAA Q+GV Sbjct: 1 MAILPICIIGEPVLHRRTEPVPLDDAGKPSAEVIALLDDMYDTMDAAHGVGLAANQVGVG 60 Query: 56 YRLVVIDLQDHAH---RKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRS 107 R+ V D + + INP +I D EGCLS+P + R+ Sbjct: 61 LRMFVYDCPEGERYVPERRRGEVINPVLETSEIPETMPDPDDNDEGCLSVPGEQFPTGRA 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D ++ G A LQHE HL+G L++D L Sbjct: 121 DWARVTGVDRTGAEVVVEGTGFFARMLQHETGHLDGFLYVDVL 163 >gi|323464693|gb|ADX76846.1| peptide deformylase 1 [Staphylococcus pseudintermedius ED99] Length = 161 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + PILR+ + P+ ++ + +LI ++ + +Y +G LAA QIGV R+ ++ Sbjct: 1 MIRKIKTHMHPILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + INP++I SD+ + EGCLS+P +V RS ITVR D N Sbjct: 61 DM----EQDGLLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNE 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D+LNGILF+D + R Sbjct: 117 VEMTAYDDIARMILHVIDNLNGILFVDMMDRE 148 >gi|116783457|gb|ABK22950.1| unknown [Picea sitchensis] Length = 305 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L + + ++I S+ I +ID+M+ VM++ G GLAA Q+GV +++V+ Sbjct: 118 EIVQAGDPVLHECAAEVAVDEIGSERIQKIIDDMIAVMWNAPGCGLAAPQLGVPLQIIVL 177 Query: 62 DLQDH-----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + ++ A ++P ++ INPK+ + + + EGCLS+ +R V+R Sbjct: 178 EDKEEYIRFTLKEETEAQERHPFDLLIIINPKLKSKGIKTAKFFEGCLSVNGFRGLVERH 237 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V + I A G A LQHE DHL G+L++D L Sbjct: 238 LEVEVTGFGRDGLPIKINATGWKARILQHECDHLAGLLYVDKLIP 282 >gi|169827062|ref|YP_001697220.1| peptide deformylase [Lysinibacillus sphaericus C3-41] gi|168991550|gb|ACA39090.1| Peptide deformylase 1 [Lysinibacillus sphaericus C3-41] Length = 176 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 82/153 (53%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P +L + +IN +++ L+D++ + M DG+G+AA QI + R+ + Sbjct: 13 MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L ++ + INP +I D + EGCLS P +V+R +++ + D + Sbjct: 73 VEL---GEERDILEMINPTVIET-DGAEIDIEGCLSFPGLYGEVERPSYVKIEACDREGR 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A G A + HE+DHL+G+LF + R+ Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFDSKIQRV 161 >gi|299535919|ref|ZP_07049239.1| peptide deformylase [Lysinibacillus fusiformis ZC1] gi|298728671|gb|EFI69226.1| peptide deformylase [Lysinibacillus fusiformis ZC1] Length = 164 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P +L + +IN +I+ L+D++ + M DG+G+AA QI V R+ + Sbjct: 1 MAIKKVIENPAKVLSTPCAEVTEINDEIITLLDDLYDTMVEYDGVGIAAPQIDVGLRVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L ++ + INP ++ D V EGCLS P +V+R +++ + D + Sbjct: 61 VEL---GEERDILEMINPTVVET-DGAEVDIEGCLSFPGLYGEVERPSYVKIEACDREGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A G A + HE+DHL+G+LF + R+ Sbjct: 117 VYELEAGGFDARAILHEIDHLDGVLFDSKIKRI 149 >gi|111114886|ref|YP_709504.1| peptide deformylase [Borrelia afzelii PKo] gi|110890160|gb|ABH01328.1| polypeptide deformylase [Borrelia afzelii PKo] Length = 165 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 3/156 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ + V+ Sbjct: 2 EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSIFVVREN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A P+VFINP I S + + Y+EGCLSIP D+ R I + + D N + I Sbjct: 62 KMAK---PLVFINPVITETSYELNSYKEGCLSIPGVYYDLMRPKGIVINFYDENEKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 LA +QHE+DHLNG+LFID+ ++ + K Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEERIKNKLLK 154 >gi|319892209|ref|YP_004149084.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] gi|317161905|gb|ADV05448.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] Length = 161 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + PILR+ + P+ ++ + +LI ++ + +Y +G LAA QIGV R+ ++ Sbjct: 1 MIRKIKTHMHPILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + INP++I SD+ + EGCLS+P +V RS ITVR D N Sbjct: 61 DM----EQDGLLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNE 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D+LNGILF+D + R Sbjct: 117 VEMTAYDDIARMILHVIDNLNGILFVDMIDRE 148 >gi|326316988|ref|YP_004234660.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373824|gb|ADX46093.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 179 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 7/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ D L R++RP+ + ++ L+ +M + M + +G GLAA QIGV ++V Sbjct: 1 MAIHDILKMGDERLLRIARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVV 60 Query: 60 VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + R P V +NP+I D+ EGCLS+P R V R + I Sbjct: 61 IFGSNERNPRYPDRPLVPPTVLVNPRITPLGDEEEEDWEGCLSVPGLRGVVPRWSRIHYA 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + +G A +QHE DHL G L+ + R Sbjct: 121 GFDEHGTPIDRTVEGFHARVVQHECDHLVGKLYPMRIRDFSR 162 >gi|301167996|emb|CBW27582.1| peptide deformylase [Bacteriovorax marinus SJ] Length = 179 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 9/174 (5%) Query: 1 MVKKPLVIFPDPILRRVS--RPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M K L +P+LR+V+ P E+I + LI ++ + M GIG+AA QIGV Y+ Sbjct: 1 MAIKDLTKMGNPVLRKVALEYPSEEIGGEKFIKLIKDLEDTMKENGGIGIAAPQIGVSYQ 60 Query: 58 LVVIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + +I L D++ R + + +NP I + EGCLS+P R V R + Sbjct: 61 VAIIQLPDNSERYPDIAKSDQYIVVNPTIEVLDQTEQGFWEGCLSVPGLRGFVHRPRKVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + +++ AQ + + +G LAT QHELDHL G L+ID + L ++ + Sbjct: 121 ITFLNDRAQQEELILEGFLATVFQHELDHLFGKLYIDRIKDLTLLSYEEEFRQF 174 >gi|107028797|ref|YP_625892.1| peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116690044|ref|YP_835667.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|170733379|ref|YP_001765326.1| peptide deformylase [Burkholderia cenocepacia MC0-3] gi|105897961|gb|ABF80919.1| Peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116648133|gb|ABK08774.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|169816621|gb|ACA91204.1| peptide deformylase [Burkholderia cenocepacia MC0-3] Length = 177 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L +++P+E+ + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGNNNRYPDAPPVPETVLINPKVEYLPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q A+G A +QHE DHL G L+ ++ R T+ + Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167 >gi|108759554|ref|YP_631592.1| peptide deformylase [Myxococcus xanthus DK 1622] gi|108463434|gb|ABF88619.1| peptide deformylase [Myxococcus xanthus DK 1622] Length = 201 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + +V DP+LRR +R + + + LI+ M + M G+GLAA Q+GV R+ Sbjct: 1 MVLKIVQAGDPVLRRKARDLTPEEIASPETARLIEQMRDTMRDAPGVGLAAPQVGVGLRV 60 Query: 59 VVID-----------LQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 VVI+ + A + P+ V INP+++ + + EGCLS+ + A V Sbjct: 61 VVIEDRPEYQAGLSESERAARGRKPVPFHVLINPRLVVEDAAPAEFHEGCLSVSGFAALV 120 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R+ + V +D + Q + A G A LQHELDHL+G L++D + Sbjct: 121 PRACAVRVDALDEHGQPVTVQARGWYARILQHELDHLDGTLYVDRME 167 >gi|315453778|ref|YP_004074048.1| polypeptide deformylase [Helicobacter felis ATCC 49179] gi|315132830|emb|CBY83458.1| polypeptide deformylase [Helicobacter felis ATCC 49179] Length = 173 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 98/157 (62%), Gaps = 5/157 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P LR S + ++ + +++M E M + GIGLAA+Q+GV R+++ Sbjct: 1 MAILEVLQYPHKKLRTRSSEVRVFDAQLHAFLEDMHETMLARKGIGLAAIQVGVPKRILI 60 Query: 61 IDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 I+L + H ++ + INP I T ++ +++EGCLS+P++ +++R A +T+ Y D Sbjct: 61 INLPREEDETQHPEDRLEIINPVI-THTEGSILWREGCLSVPEFYEEIERHANLTLAYQD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + +++ A LL+ +QHE+DHLNGILF+D LS L Sbjct: 120 RHGESKMLQASELLSVAIQHEMDHLNGILFVDKLSML 156 >gi|161524426|ref|YP_001579438.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|189350819|ref|YP_001946447.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|160341855|gb|ABX14941.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|189334841|dbj|BAG43911.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616] Length = 177 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55 + + ++ DP L V+RP+++ + ++ ++ +M E M+ +G GLAA QIG+ Sbjct: 1 MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + D A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNDRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A+G A +QHE DHL G L+ ++ R T+ + Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167 >gi|237795811|ref|YP_002863363.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|229264121|gb|ACQ55154.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 150 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+T +G GLAA+Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAALQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147 >gi|50084241|ref|YP_045751.1| peptide deformylase 2 [Acinetobacter sp. ADP1] gi|49530217|emb|CAG67929.1| peptide deformylase 2 [Acinetobacter sp. ADP1] Length = 160 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 8/149 (5%) Query: 10 PDPILRRVSRPIEK--INSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + IL+ + P+ + +S+ + L+ M M +G+G+AA QI V R++++ + + Sbjct: 11 GEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIVASRPN 70 Query: 67 AHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + P+V INP+I FS + + +EGCLS+PD R V+R+ I VRY Q Sbjct: 71 PRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRYFSLQGQL 130 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 G A +QHE+DHLNG+LF+D L Sbjct: 131 IEQRFHGFPARIVQHEIDHLNGVLFVDRL 159 >gi|302529604|ref|ZP_07281946.1| polypeptide deformylase [Streptomyces sp. AA4] gi|302438499|gb|EFL10315.1| polypeptide deformylase [Streptomyces sp. AA4] Length = 218 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR +RP E + + LI+ M E M++ G+GLAA QIG+ R+ V++ Sbjct: 25 PIVQAGDPVLRAAARPYEGELSDDTLSALIEGMKETMHAAPGVGLAAPQIGLSVRIAVVE 84 Query: 63 LQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 V +NP D+ + + EGCLS+ ++A V R+ Sbjct: 85 DGARERPGVAESTLATRGIVPLPFRVLVNPTYTRVGDETAAFFEGCLSVRGWQAVVARAL 144 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I +R D G A +QHE DHL+G+L++D Sbjct: 145 RIRLRGSDETGASLDEELSGWPARIVQHETDHLHGVLYLDRAE 187 >gi|254449483|ref|ZP_05062920.1| peptide deformylase [Octadecabacter antarcticus 238] gi|198263889|gb|EDY88159.1| peptide deformylase [Octadecabacter antarcticus 238] Length = 144 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 54/138 (39%), Positives = 77/138 (55%) Query: 22 EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81 E + D++ LID++ + MY G GLAA QIGV R+ V+D+ ++P FINP+I Sbjct: 2 ELDDPDLVGLIDDLFDTMYHAKGRGLAAPQIGVTKRVFVVDVTWKEGTRDPRAFINPQIT 61 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 + D + E CLSIPD V R I +R+ + + DG+LA C+QHELDHL Sbjct: 62 ETAGDMLIMNEQCLSIPDIPMPVARPERIQLRWTRRDGGLETAVFDGILARCIQHELDHL 121 Query: 142 NGILFIDHLSRLKRDMIT 159 NG + DH + R + Sbjct: 122 NGTVIFDHQTPEMRTELE 139 >gi|134094555|ref|YP_001099630.1| peptide deformylase 2 like proterin [Herminiimonas arsenicoxydans] gi|133738458|emb|CAL61503.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas arsenicoxydans] Length = 178 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV+ P+++ N ++ LI +M + M++ G GLAA QIGV RLV Sbjct: 1 MTVREILKMGDPRLLRVAEPVKEFNTPELNALIADMFDTMHAAHGAGLAAPQIGVNLRLV 60 Query: 60 VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + A V INPK+ S + EGCLS+P R V R + + Sbjct: 61 IYGFKQNTRYPDAPPVPETVLINPKLRPLSSEREEGWEGCLSVPGLRGVVPRFSSLHYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D + ADG A +QHE DHL+GIL+ + Sbjct: 121 FDQFGKAISRDADGFHARVVQHECDHLDGILYPMRIEDF 159 >gi|119952868|ref|YP_945077.1| peptide deformylase [Borrelia turicatae 91E135] gi|119861639|gb|AAX17407.1| peptide deformylase [Borrelia turicatae 91E135] Length = 165 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+ +LR ++ + I++++ N M+ +M + +G+GLAA Q+G+ + V+ Sbjct: 3 IVCYPNDLLRIKTKTVLNIDNELRNTAFKMVNLMDAKNGVGLAASQVGLDLSIFVV---R 59 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P++FINP I S + +Y+EGCLSIP D+ R I V D N + I Sbjct: 60 ENAMSKPLIFINPLITETSFELVLYKEGCLSIPGVYYDLLRPKSIIVEAYDENGEFFKIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 + GLLA +QHE+DHL G+LFID+ +L+ +++ M K Sbjct: 120 SSGLLARIVQHEMDHLKGVLFIDYYEDKLRNNLLRSYMKK 159 >gi|89052958|ref|YP_508409.1| formylmethionine deformylase [Jannaschia sp. CCS1] gi|88862507|gb|ABD53384.1| formylmethionine deformylase [Jannaschia sp. CCS1] Length = 161 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 3/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++++PDP+L V + ++ + LI ++ + MY+ G GLAA QIGVL R+ V Sbjct: 1 MSVRRVLLWPDPLLSVVCDAVVAVDPE---LIKDLFDTMYAAKGRGLAAPQIGVLQRVFV 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ ++P VFINP + +D +E CLSIPD V R +T+ + + Sbjct: 58 VDVTWKEGARDPRVFINPVVRDSGEDMRSMEEQCLSIPDLPMQVTRPTTLTLDWETPEGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 DG LA C+ HELDHL+G + DH S +R + Sbjct: 118 KTTGTFDGNLARCILHELDHLDGTVIFDHQSPARRAELE 156 >gi|28493277|ref|NP_787438.1| formylmethionine deformylase [Tropheryma whipplei str. Twist] gi|39930873|sp|Q83GH8|DEF_TROWT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28476318|gb|AAO44407.1| formylmethionine deformylase [Tropheryma whipplei str. Twist] Length = 228 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 18/164 (10%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ I +L ++P+ S I ++ +M M++ G+GLA QIG+ R+ V Sbjct: 36 ILPIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYS 94 Query: 63 LQDHAHRKNPMVFINPKIITFSD----------------DFSVYQEGCLSIPDYRADVKR 106 + + V INP ++ +EGCLS P Y+ ++R Sbjct: 95 YTE-GDTLHQGVAINPDLLIPKGVPKRQTNKQQANNSTSCDEPDREGCLSFPGYQFPLER 153 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + +T+ D N + ++A G LA QHE DHL G L++D L Sbjct: 154 APQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRL 197 >gi|162148854|ref|YP_001603315.1| peptide deformylase 2 [Gluconacetobacter diazotrophicus PAl 5] gi|209545397|ref|YP_002277626.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|161787431|emb|CAP57026.1| putative peptide deformylase 2 [Gluconacetobacter diazotrophicus PAl 5] gi|209533074|gb|ACI53011.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] Length = 176 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+L R + + + DI LID+M+E M G GLAA Q+ V RL Sbjct: 1 MTLLKIARMGHPVLLRRADEVADPTAPDIARLIDDMIETMEDARGAGLAAPQVHVSLRLF 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V + + V INP + D+ ++ EGCLSIP R V R I Sbjct: 61 VYRVPAERSAGGDDPPRETSVLINPVLSLVDDEMALRPEGCLSIPGLRGMVPRHVRIAYS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D Q A G LA LQHE DHL+GIL+ ++ L + +++ Sbjct: 121 GLDRAGQAVQGVASGFLANVLQHEYDHLDGILYPMRMTDLGQMGFDEEI 169 >gi|309789939|ref|ZP_07684515.1| peptide deformylase [Oscillochloris trichoides DG6] gi|308227959|gb|EFO81611.1| peptide deformylase [Oscillochloris trichoides DG6] Length = 185 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 16/177 (9%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ +P L+ RP++ + ++ L+ +M E M + G+GLAA Q+G+ Sbjct: 1 MSTRRILRIDNPEDKKTLKMQCRPVKLPDRNLKQLVADMFETMRKSHGVGLAAPQVGLPI 60 Query: 57 RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 +L +I++ +++ V INP+I+ S D + EGCLS+P + V Sbjct: 61 QLCIIEIPAEIEQRDDGTEVEVAPAEEYVLINPRIVKTSGDEIMRDEGCLSLPGWYGMVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 R +++TV Y D N + + DGLL +QHE+DHL+G+LF + + L K Sbjct: 121 RHSWVTVEYQDFNGKQHRLRKADGLLGWAIQHEVDHLHGVLFTERIRDLSTLRDVSK 177 >gi|260072680|gb|ACX30577.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster bacterium] Length = 163 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 20/162 (12%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---------------- 68 N L+ NM E MY+ DGIGLAA QI ++VV+D+ D Sbjct: 2 NDKTRILVKNMFETMYAEDGIGLAATQINQHLQIVVMDVPDSQDDYELLLKNRKNDSDKE 61 Query: 69 ---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +P+ FINPKI T S + EGCLS+P ++A+V+RS IT+ ++ + ++ Sbjct: 62 TNIQHHPLCFINPKITTISG-HEKHIEGCLSVPGFQAEVERSNQITIEALNEQGESFTLH 120 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A LLA C+QHELDHL GILF+D+LS+LK+ + +K K+++ Sbjct: 121 ASNLLAVCIQHELDHLKGILFVDYLSKLKQKRLLEKTKKVIK 162 >gi|170703079|ref|ZP_02893901.1| peptide deformylase [Burkholderia ambifaria IOP40-10] gi|171322052|ref|ZP_02910926.1| peptide deformylase [Burkholderia ambifaria MEX-5] gi|172060971|ref|YP_001808623.1| peptide deformylase [Burkholderia ambifaria MC40-6] gi|170132008|gb|EDT00514.1| peptide deformylase [Burkholderia ambifaria IOP40-10] gi|171092643|gb|EDT37944.1| peptide deformylase [Burkholderia ambifaria MEX-5] gi|171993488|gb|ACB64407.1| peptide deformylase [Burkholderia ambifaria MC40-6] Length = 177 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55 + + ++ DP L V++P+ + + ++ ++ +M E M+ +G GLAA QIG+ Sbjct: 1 MIREILKMGDPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A+G A +QHE DHL G L+ ++ R T+ + Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167 >gi|325107786|ref|YP_004268854.1| peptide deformylase [Planctomyces brasiliensis DSM 5305] gi|324968054|gb|ADY58832.1| peptide deformylase [Planctomyces brasiliensis DSM 5305] Length = 198 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 82/151 (54%), Gaps = 2/151 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V++P P LR S P+++INS + +D M +MY GIGLAA Q+ + Y+L VI+L Sbjct: 2 DIVLYPHPALRYKSVPVQEINSALRKTVDEMFGLMYDAKGIGLAANQVALPYQLFVINLT 61 Query: 65 -DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D A + MVFINP I+ +EGCLS P+ V RSA I V D Sbjct: 62 ADPAEKSEEMVFINPTILKRRG-QETGEEGCLSFPEMFGPVDRSAEIVVEAFDLRGALFR 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + A +QHE DH+ G LFIDH+ + Sbjct: 121 YELSEMAARAVQHENDHIEGTLFIDHMKEAE 151 >gi|221215452|ref|ZP_03588416.1| peptide deformylase [Burkholderia multivorans CGD1] gi|221164636|gb|EED97118.1| peptide deformylase [Burkholderia multivorans CGD1] Length = 177 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55 + + ++ DP L V+RP+++ + ++ ++ +M E M+ +G GLAA QIG+ Sbjct: 1 MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A+G A +QHE DHL G L+ ++ R T+ + Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167 >gi|284031698|ref|YP_003381629.1| peptide deformylase [Kribbella flavida DSM 17836] gi|283810991|gb|ADB32830.1| Peptide deformylase [Kribbella flavida DSM 17836] Length = 240 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 14/168 (8%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + + + + + ++ + M + G+GLAA Q+GV R+ V++ Sbjct: 51 PIVQLGDPVLRRKAEPFDGQFDDGLLKDFVELLRRTMLAAPGVGLAAPQVGVPLRIAVLE 110 Query: 63 LQD-------HAHRKNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + P+ F+ NP+ D + EGCLS+P + V R + Sbjct: 111 DPATVSAEVAEARERYPLEFLAVLNPEYAPRGRDKRGFYEGCLSMPGFTGVVSRPLKVDA 170 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 Y D + + G A QHE DHLNG L++D + R M T Sbjct: 171 GYSDLTGARRRLTLSGWQARIFQHETDHLNGRLYVDQVEP--RSMATS 216 >gi|226510000|ref|NP_001140879.1| hypothetical protein LOC100272955 [Zea mays] gi|194701558|gb|ACF84863.1| unknown [Zea mays] Length = 256 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 18/168 (10%) Query: 1 MVKKP-LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M+ P V DP+L ++ + + + +ID M++VM G+GLAA QIGV Sbjct: 64 MMVTPGTVKAGDPVLHEPAQEVAPGDVLSEKVQGVIDRMVDVMRRAPGVGLAAPQIGVPL 123 Query: 57 RLVVI-------------DLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 R++V+ D++ R + +V INPKI + S +++ EGCLS+ YRA Sbjct: 124 RIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKIKSTSKRTALFFEGCLSVDGYRA 183 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V+R + V +D N + A G A LQHE DHL G L++D + Sbjct: 184 VVERHLDVEVSGLDRNGSTMKVRASGWQARILQHECDHLEGTLYVDKM 231 >gi|325831341|ref|ZP_08164595.1| peptide deformylase [Eggerthella sp. HGA1] gi|325486595|gb|EGC89043.1| peptide deformylase [Eggerthella sp. HGA1] Length = 183 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 82/158 (51%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+PIL ++ P + + + L M + MY DG G+AA Q+GV RLVVID Sbjct: 7 IVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVIDCDQ 66 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++P+V +NP ++ D V EGCLS P + R F VRY D + + I Sbjct: 67 DEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEEWEIE 126 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 +GLL CLQHELDHL+GI + + R + Sbjct: 127 GEGLLGRCLQHELDHLDGITMFERCDPMTRIEALRDYE 164 >gi|28572612|ref|NP_789392.1| peptide deformylase [Tropheryma whipplei TW08/27] gi|39930875|sp|Q83HQ3|DEF_TROW8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28410744|emb|CAD67130.1| peptide deformylase [Tropheryma whipplei TW08/27] Length = 201 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 18/164 (10%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ I +L ++P+ S I ++ +M M++ G+GLA QIG+ R+ V Sbjct: 9 ILPIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYS 67 Query: 63 LQDHAHRKNPMVFINPKIITFSD----------------DFSVYQEGCLSIPDYRADVKR 106 + + V INP ++ +EGCLS P Y+ ++R Sbjct: 68 YTE-GDTLHQGVAINPDLLIPKGVPKRQTHKQQANNSTSCDEPDREGCLSFPGYQFPLER 126 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + +T+ D N + ++A G LA QHE DHL G L++D L Sbjct: 127 APQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRL 170 >gi|114564402|ref|YP_751916.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] gi|114335695|gb|ABI73077.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] Length = 170 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%) Query: 1 MVKKP---LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M KP + + IL +++ P+ + + L DNML M + +G+G+AA Q+ Sbjct: 1 MQPKPLLSIATTGEQILTQIAEPVTVFDDALHTLADNMLSTMLNANGVGIAATQVFSNAA 60 Query: 58 LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + ++ + + P V INP+I++ S EGCLSIP R + R + I V Sbjct: 61 MFIMASNPNERYPDAPSMPPTVVINPQILSASAATEADVEGCLSIPGQRLSIARHSEIEV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +Y + Q G +A QHE DHL GI ++ ++ Sbjct: 121 QYQSLDGQLHQQTLTGFVARIFQHEYDHLQGITLLERVN 159 >gi|317490610|ref|ZP_07949082.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|316910286|gb|EFV31923.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] Length = 180 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 82/158 (51%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+PIL ++ P + + + L M + MY DG G+AA Q+GV RLVVID Sbjct: 4 IVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVIDCDQ 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++P+V +NP ++ D V EGCLS P + R F VRY D + + I Sbjct: 64 DEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEEWEIE 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 +GLL CLQHELDHL+GI + + R + Sbjct: 124 GEGLLGRCLQHELDHLDGITMFERCDPMTRIEALRDYE 161 >gi|289671064|ref|ZP_06492139.1| peptide deformylase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 171 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIRDIIRMGDKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S++ EGCLSIP RA + R +I R + Sbjct: 61 FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A+G A +QHE DHL G L+ + Sbjct: 121 APDDSPIAREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164 >gi|221198327|ref|ZP_03571373.1| peptide deformylase [Burkholderia multivorans CGD2M] gi|221208266|ref|ZP_03581270.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221171914|gb|EEE04357.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221182259|gb|EEE14660.1| peptide deformylase [Burkholderia multivorans CGD2M] Length = 177 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55 + + ++ DP L V+RP+++ + ++ ++ +M E M+ +G GLAA QIG+ Sbjct: 1 MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGS 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A+G A +QHE DHL G L+ ++ R T+ + Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167 >gi|188583614|ref|YP_001927059.1| peptide deformylase [Methylobacterium populi BJ001] gi|179347112|gb|ACB82524.1| formylmethionine deformylase [Methylobacterium populi BJ001] Length = 171 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV++PDP L R + P+ + L ++L+ + + +GL A+ IG R+VV Sbjct: 1 MPARPLVLYPDPRLHRAAGPVTASGEGVRALAADVLDTLGAVSAMGLTAIHIGRPERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I LQ V+++P ++ S + + + EG +S+P V+R A + VRY D + Sbjct: 61 IRLQPDEPHA---VYVDPVLVWASPERAAHPEGSVSMPGVVEPVERPARVRVRYRDLDGA 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GL A CLQHE+D L+GI +ID LSRL+R+ + K+ +KL + Sbjct: 118 EHEEEAEGLRAACLQHEIDQLDGIFWIDRLSRLRRERVLKRFAKLRTQQ 166 >gi|139436889|ref|ZP_01771049.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC 25986] gi|133776536|gb|EBA40356.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC 25986] Length = 180 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 83/160 (51%), Gaps = 2/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V+ PDP LR+ IE+I I L + M ++M+ G GLAA QIG L +LV ID Sbjct: 8 IVLSPDPRLRQECAVIEEITPAIEALAEKMKKIMFENGGCGLAAPQIGELIQLVTIDCDY 67 Query: 66 HAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +P V INP I+ SD + EGCLSIP +++R + V D +A Sbjct: 68 SDKNDYDPYVLINPVIVEQSDHLVPFSEGCLSIPGISCEIERPDHVVVEAYDLDANLIRY 127 Query: 125 YADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 A G L CLQHE+DHL+G + L ++R K+ Sbjct: 128 EATGDLFCVCLQHEIDHLHGNTMFERLKPMQRIKAVKEYQ 167 >gi|94970942|ref|YP_592990.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] gi|94552992|gb|ABF42916.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] Length = 208 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 17/166 (10%) Query: 2 VKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 ++ LV +P+LR + P+ E + +I LI++M + + G+GLAA Q+GV +L Sbjct: 13 MRLKLVQAGEPVLRTPAEPLAIKEIASREIARLIEDMRDTLEDAPGVGLAAPQVGVPIQL 72 Query: 59 VVIDLQDHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +I+ + + P V INP + + EGCLS+ + A V Sbjct: 73 AIIEDRAEYSKDIPTEQLAERGRVPVPFHVIINPVLKPLGKSQVDFFEGCLSVAGFIAVV 132 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 R + V +D N + I A G A LQHE+DHLNG L++D + Sbjct: 133 PRYRKVRVTCLDENGAQRRIEASGWYARILQHEIDHLNGTLYVDRM 178 >gi|329938533|ref|ZP_08287958.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] gi|329302506|gb|EGG46397.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] Length = 218 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 12/160 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P E ++++ +++ + + M++ G+GLAA Q+GV R+ VI+ Sbjct: 28 PIVAAGDPVLRRGAEPFEGQLDAPLLDRFLAALRATMHAAPGVGLAAPQVGVPLRIAVIE 87 Query: 63 LQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + V +NP ++ + + EGCLS+P ++A V R A + + Sbjct: 88 DPAPVPEEVRSARGRVPQPYRVLVNPSYEAVGEERAAFFEGCLSVPGWQAVVARHARVRL 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +D G A +QHE DHL+G L++D Sbjct: 148 RGLDARGAVLDEEFAGWPARIVQHETDHLDGTLYLDRAEP 187 >gi|237843361|ref|XP_002370978.1| peptide deformylase, putative [Toxoplasma gondii ME49] gi|211968642|gb|EEB03838.1| peptide deformylase, putative [Toxoplasma gondii ME49] gi|221502320|gb|EEE28053.1| peptide deformylase, putative [Toxoplasma gondii VEG] gi|289064341|gb|ADC80546.1| peptide deformylase [Toxoplasma gondii] Length = 353 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 2 VKKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 V ++ P +LR + P + + L ++L VMY G+GLAA Q+GV +++V Sbjct: 183 VTLDVLAAPHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIV 242 Query: 61 ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + D VF+NP++++ EGCLS+P A V+R VRY Sbjct: 243 WNPTGDVRESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEG 302 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + GL A +QHE+DHL+GILF+D + R +R Sbjct: 303 IQREATLSGLEARVVQHEIDHLHGILFVDRVHRGER 338 >gi|290955665|ref|YP_003486847.1| polypeptide deformylase [Streptomyces scabiei 87.22] gi|260645191|emb|CBG68277.1| polypeptide deformylase [Streptomyces scabiei 87.22] Length = 218 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + +++ + + + M++ G+GLAA Q+GV R+ VI+ Sbjct: 28 PIVAAGDPVLRRTAEPFDGQLDPALLARFVAALRATMHAAPGVGLAAPQVGVSLRIAVIE 87 Query: 63 LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + V +NP + EGCLS+P ++A V R A + + Sbjct: 88 DPAPVPEEVRLARGRVPQPFRVLVNPAYEAVGPFRDAFFEGCLSVPGWQAVVARHARVRL 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +D + G A +QHE DHLNG L++DH Sbjct: 148 RALDERGRAVDEEFSGWPARIVQHETDHLNGTLYLDHAE 186 >gi|295698622|ref|YP_003603277.1| peptide deformylase [Candidatus Riesia pediculicola USDA] gi|291157320|gb|ADD79765.1| peptide deformylase [Candidatus Riesia pediculicola USDA] Length = 151 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 58/147 (39%), Positives = 95/147 (64%), Gaps = 2/147 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PD LR+V++P++ I S+I +L+ NM ++MY GIGLAA Q+ + R+VVI++ Sbjct: 7 ILQYPDSRLRKVAKPVKLITSEIKDLVRNMFKIMYEKGGIGLAATQVNIHQRIVVINIS- 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +K+ + INP I++ S +E CLS+ + + RS FI V+ + + I + Sbjct: 66 QREKKDELTLINPIILS-SHGVISLEERCLSVSNRAGCILRSKFIEVKTKSLSGKEFIFH 124 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152 A GLL+ C+QHE+DHL+G LFID+L + Sbjct: 125 AKGLLSVCIQHEVDHLDGKLFIDYLRK 151 >gi|226729275|sp|B6RGY0|DEF1A_ORYSJ RecName: Full=Peptide deformylase 1A, chloroplastic; Short=OsPDF1A; Short=PDF 1A; Flags: Precursor gi|164633052|gb|ABY64739.1| peptide deformylase 1A [Oryza sativa Japonica Group] Length = 260 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 18/170 (10%) Query: 1 MVKKP-LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P V DP+L ++ + + + +ID M+ VM G+GLAA QIGV Sbjct: 68 MTVTPGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPL 127 Query: 57 RLVVI-------------DLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 +++V+ D++ R + +V INPK+ T S +++ EGCLS+ YRA Sbjct: 128 KIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRA 187 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+R + V +D N + + A G A LQHE DHL G L++D + Sbjct: 188 LVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVP 237 >gi|119960758|ref|YP_947936.1| peptide deformylase [Arthrobacter aurescens TC1] gi|119947617|gb|ABM06528.1| peptide deformylase [Arthrobacter aurescens TC1] Length = 224 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 12/158 (7%) Query: 6 LVIFPDPILRRVSRPIE-KINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V P+LR+++ P + +I+ ++ ++ M EVM+ G+GLAA Q+G+ +L V++ Sbjct: 37 IVQAGHPVLRQLAAPYDGQIDDAELAAFLERMKEVMHDAPGVGLAAPQLGIPLQLAVLED 96 Query: 64 -------QDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + P+ F +NP+ + + + EGCLS+ Y+A V R + +R Sbjct: 97 KYEVDPESAAVRHREPLEFFAIVNPQYRPLGTETASFYEGCLSVSGYQAVVTRHRNVELR 156 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y + + + G A +QHE DHL GIL++D Sbjct: 157 YTNPAGEPVEEWFSGWQARIVQHETDHLRGILYLDRAE 194 >gi|307822304|ref|ZP_07652536.1| peptide deformylase [Methylobacter tundripaludum SV96] gi|307736870|gb|EFO07715.1| peptide deformylase [Methylobacter tundripaludum SV96] Length = 178 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + + +LR+ + + + + +I +I+ M + +T G+G+AA QI L ++ Sbjct: 1 MTRVREIAQLGAKVLRQKAEAVADVHDVEIRQIIEAMQSTLATTSGVGIAAPQISKLKQI 60 Query: 59 VVIDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++I + P V INP S+ EGCLS+P RA V R I + Sbjct: 61 IIIASRPTPRYPSAPLMEPTVMINPCFEVLSEAQEKGWEGCLSVPGIRALVPRYQEIMIH 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Y D G +A QHE+DHL G ++D + + KLV Sbjct: 121 YTDQQGGLVESKLSGFVARIFQHEVDHLEGKTYLDRVENNADIFAESEYVKLV 173 >gi|297564644|ref|YP_003683616.1| peptide deformylase [Meiothermus silvanus DSM 9946] gi|296849093|gb|ADH62108.1| peptide deformylase [Meiothermus silvanus DSM 9946] Length = 195 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 17/183 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ DP+LR+ + ++ S+I L +NM E M+ G+GLAA Q+G RL V Sbjct: 1 MIYPIRLYGDPVLRKRASSVKDF-SEIPRLAENMFETMFEARGVGLAAPQVGRSERLFVF 59 Query: 62 -------------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRS 107 + KN V +NP I T+ + EGCLSIP Y +V R Sbjct: 60 AEYVDAEDEEEGEEADLKTRVKNQWVMVNPAI-TYRAGQQISTEGCLSIPGLYSDEVPRD 118 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS-KLV 166 I V Y + + + +G LA +QHELDHL+G LF + L + + ++ +L Sbjct: 119 LQIRVEYQNELGEKKTQEFEGYLAVVVQHELDHLDGTLFFERLPKDLKAAFLEEHRHELA 178 Query: 167 QLR 169 +++ Sbjct: 179 EMQ 181 >gi|87162608|gb|ABD28403.1| Formylmethionine deformylase [Medicago truncatula] Length = 257 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP++ +R ++ + I N+ID+M+ VM G+G+AA QIG+ R++V++ Sbjct: 70 IVKAGDPVIHEPAREVDHSEIKSDKIQNIIDDMILVMRKAPGVGVAAPQIGIPLRIIVLE 129 Query: 63 LQD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 ++ + +V +NPK+ S+ + + EGCLS+ ++A V+R Sbjct: 130 DKEEFICYNTEEETKAQDRRPFDLLVILNPKLKNKSNRTAFFFEGCLSVDRFQALVERYL 189 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + I A G A LQHE DHL+G L++D + Sbjct: 190 DVEVTGFDRYGEPIKINASGWQARILQHECDHLDGTLYVDKMVP 233 >gi|299139618|ref|ZP_07032792.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] gi|298598546|gb|EFI54710.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] Length = 191 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 17/166 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 ++ +V +P+LR S+ + K ++ I NLID M E + G+GLAA Q+G +L Sbjct: 1 MRLKIVTVGEPVLRATSQMLSKEQILSPSIQNLIDYMRETVRDAPGVGLAAPQVGESLQL 60 Query: 59 VVID-------------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 VI+ +++ P V +NP + + + + EGCLS+P + A V Sbjct: 61 AVIEDKAEYHKNLTEAEMKERGRAAVPFHVLVNPVLEVRGESTATFFEGCLSLPGFTALV 120 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 R+ + V +D + ++I A G A LQHE+DHL+G L+ID + Sbjct: 121 PRAKEVRVTGLDHRGEPRVIEASGWYARILQHEIDHLHGTLYIDRM 166 >gi|239503010|ref|ZP_04662320.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB900] Length = 160 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 8/158 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + IL+ + P+ ++NS+ + L D M M +G+G+AA Q+ + R+ Sbjct: 3 VVLPVAKRGEDILKLTAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRI 62 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + V+ Sbjct: 63 IIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVK 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 123 YLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|117926769|ref|YP_867386.1| peptide deformylase [Magnetococcus sp. MC-1] gi|117610525|gb|ABK45980.1| peptide deformylase [Magnetococcus sp. MC-1] Length = 177 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 92/177 (51%), Gaps = 9/177 (5%) Query: 1 MVKKPLVIFPDPILRRVSR--PIEKI-NSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLY 56 M ++++PD L + R E+ + +++++E G +GLAA Q+ Sbjct: 1 MAILDVLVYPDQRLLQPCRSLEAEEFKTAAFQAFVEDLIETTQHAPGCVGLAAPQVDHAI 60 Query: 57 RLVVIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 R+VV++ ++ NP+II++ + +EGC+S+PDY +V R+ I+V Sbjct: 61 RMVVVNCGLARKPPDEHHGELILCNPEIISW-EGMETAREGCMSVPDYTGNVMRATHISV 119 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++ D + Q Q+ + G A +QHE+DHL G LF D + K D+ +K+ + + R Sbjct: 120 QFQDRHGQEQVRHFKGFEARVVQHEMDHLEGKLFTDRVVSRKADLFPRKVYQKKRNR 176 >gi|254252055|ref|ZP_04945373.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] gi|124894664|gb|EAY68544.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] Length = 177 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55 + + ++ DP L V+ P+ + + ++ ++ +M + M+ +G GLAA QIG+ Sbjct: 1 MIREILKMGDPRLLEVAEPVRQFDTPELHEIVADMFDTMHHANGAGLAAPQIGIGLQIII 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + A V INPKI D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYVGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D A+G A +QHE DHL G L+ ++ R T+ + Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167 >gi|184157242|ref|YP_001845581.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU] gi|332872902|ref|ZP_08440866.1| peptide deformylase [Acinetobacter baumannii 6014059] gi|183208836|gb|ACC56234.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU] gi|193076693|gb|ABO11393.2| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978] gi|322507127|gb|ADX02581.1| Peptide deformylase 2 [Acinetobacter baumannii 1656-2] gi|323517106|gb|ADX91487.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii TCDC-AB0715] gi|332738913|gb|EGJ69776.1| peptide deformylase [Acinetobacter baumannii 6014059] Length = 160 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 8/158 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + R+ Sbjct: 3 VVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRI 62 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + V+ Sbjct: 63 IIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVK 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 123 YLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|295395559|ref|ZP_06805753.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] gi|294971578|gb|EFG47459.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] Length = 237 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + + +I+ ++ L+ M M + G+GLAA Q+G+ RL V + Sbjct: 43 PIVTAGDPVLRTTTARFDGQIDDSTLLELLTAMRTTMLAAPGVGLAAPQVGISLRLAVCE 102 Query: 63 LQDH-------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 A + P+ INP +D + EGCLSIP Y+A V R +T+ Sbjct: 103 DPGTTSAEHAAARERTPLPFTALINPTYQPATDQLVAFYEGCLSIPGYQAVVARPRTVTL 162 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D G + HE DHL+GIL++D Sbjct: 163 TAHDHQGATITKDITGWAGRIIAHETDHLDGILYLDKAE 201 >gi|333023046|ref|ZP_08451110.1| putative peptide deformylase [Streptomyces sp. Tu6071] gi|332742898|gb|EGJ73339.1| putative peptide deformylase [Streptomyces sp. Tu6071] Length = 214 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + P E + + L+ M M G+GLAA QIGV RL V++ Sbjct: 25 PIVAAGDPVLRTPAAPYEGQLPEALLSRLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 84 Query: 63 LQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + V +NP + + + EGCLS+P ++A V R A + + Sbjct: 85 DPATVPEEVRRVREREPLPYRVLVNPVCEGVGERRAAFYEGCLSVPGWQAVVARHAVVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R D + + G A +QHE DHL+G L++D Sbjct: 145 RAEDEHGRGLDEEVRGWPARIVQHETDHLDGTLYVDR 181 >gi|169796843|ref|YP_001714636.1| peptide deformylase 2 [Acinetobacter baumannii AYE] gi|213156766|ref|YP_002318427.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|215484319|ref|YP_002326548.1| peptide deformylase [Acinetobacter baumannii AB307-0294] gi|301345256|ref|ZP_07225997.1| peptide deformylase [Acinetobacter baumannii AB056] gi|301510240|ref|ZP_07235477.1| peptide deformylase [Acinetobacter baumannii AB058] gi|301594430|ref|ZP_07239438.1| peptide deformylase [Acinetobacter baumannii AB059] gi|332854474|ref|ZP_08435381.1| peptide deformylase [Acinetobacter baumannii 6013150] gi|332870910|ref|ZP_08439542.1| peptide deformylase [Acinetobacter baumannii 6013113] gi|169149770|emb|CAM87661.1| peptide deformylase 2 [Acinetobacter baumannii AYE] gi|213055926|gb|ACJ40828.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|213986720|gb|ACJ57019.1| peptide deformylase [Acinetobacter baumannii AB307-0294] gi|332727962|gb|EGJ59355.1| peptide deformylase [Acinetobacter baumannii 6013150] gi|332731873|gb|EGJ63152.1| peptide deformylase [Acinetobacter baumannii 6013113] Length = 160 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 8/158 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + R+ Sbjct: 3 VVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRV 62 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + V+ Sbjct: 63 IIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVK 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 123 YLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|20150600|pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150601|pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150602|pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150603|pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150604|pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150605|pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150606|pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150607|pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150608|pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150609|pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design Length = 183 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 3/163 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V +PDPILRR S + + ++ ++ ++ Y + GIGL+A Q+ + R++V + L Sbjct: 5 IVKYPDPILRRRSE-VTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNALY 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +N +FINP I+ S EGCLS V+R + +++ Y D N + Sbjct: 64 EKRKEENERIFINPSIVEQSLVKLKLIEGCLSF-GIEGKVERPSIVSISYYDINGYKHLK 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID +++ + + K+++L++ Sbjct: 123 ILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 165 >gi|254490724|ref|ZP_05103908.1| peptide deformylase [Methylophaga thiooxidans DMS010] gi|224464079|gb|EEF80344.1| peptide deformylase [Methylophaga thiooxydans DMS010] Length = 178 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 6/168 (3%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++ P+LR+ + P+ I +L + G+G+AA Q+G+ + ++ Sbjct: 6 DILQLGHPLLRQRAEPVYDILAPAFQAQAKALLSFVIEKGGMGIAAPQVGISQQFFILSS 65 Query: 64 QD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +A P INP+ I SD + EGCLS+P RA V R ITVRY Sbjct: 66 HPNSRYPYAPDVPPFFVINPERIAHSDTSNKDWEGCLSLPGIRALVPRFDDITVRYQTLE 125 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 DG LA QHE DHLNG +F+D + M+ K+ K + Sbjct: 126 GDTVEKMYDGFLARVFQHEHDHLNGHVFLDRVESNYDVMMEKEWQKQI 173 >gi|253996543|ref|YP_003048607.1| peptide deformylase [Methylotenera mobilis JLW8] gi|253983222|gb|ACT48080.1| peptide deformylase [Methylotenera mobilis JLW8] Length = 181 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 10/164 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ +P L + P+ + N+ ++ LI ++ + M +G G+AA QIGV R+V Sbjct: 1 MAIGAVLRMGEPCLLAKAEPVAQFNTAELHQLIQDLEDTMQHMNGAGIAAPQIGVSLRVV 60 Query: 60 VIDLQDHA--HRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + ++ A + + P V INPK+ D EGCLS+P R V R + Sbjct: 61 IFGQKEPAAVNPRYPDADAVPYTVLINPKLTLIGDKIENDWEGCLSVPGMRGIVPRHLKL 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D G A +QHE DHL+G+L+ + LK Sbjct: 121 HYTGFDQYGNKVDRLVSGFHARVVQHECDHLDGVLYPMRIRDLK 164 >gi|242046748|ref|XP_002461120.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor] gi|241924497|gb|EER97641.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor] Length = 193 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 18/170 (10%) Query: 1 MVKKP-LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P V DP+L ++ + + + +ID M++VM G+GLAA QIGV Sbjct: 1 MAVTPGTVKAGDPVLHEPAQEVAPGDVRSEKVQGIIDRMVDVMRKAPGVGLAAPQIGVPL 60 Query: 57 RLVVID-------------LQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 R++V++ ++ R + ++ INPKI S +++ EGCLS+ YRA Sbjct: 61 RIIVLEDTQEYISYAPKKEIEAQDRRPFDLLIIINPKIKNTSKRTALFFEGCLSVDGYRA 120 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+R + V +D N + A G A LQHE DHL G L++D + Sbjct: 121 VVERHLDVEVSGLDRNGSAIKVQASGWQARILQHECDHLEGTLYVDRMVP 170 >gi|221481821|gb|EEE20191.1| peptide deformylase, putative [Toxoplasma gondii GT1] Length = 353 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 2 VKKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 V ++ P +LR + P + + L ++L VMY G+GLAA Q+GV +++V Sbjct: 183 VTLDVLAAPHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIV 242 Query: 61 ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + D VF+NP++++ EGCLS+P A V+R VRY Sbjct: 243 WNPTGDVRESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEG 302 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + GL A +QHE+DHL+GILF+D + R Sbjct: 303 IQREVTLSGLEARVVQHEIDHLHGILFVDRVHR 335 >gi|29833891|ref|NP_828525.1| peptide deformylase [Streptomyces avermitilis MA-4680] gi|39931072|sp|Q825U9|DEF3_STRAW RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName: Full=Polypeptide deformylase 3 gi|29611016|dbj|BAC75060.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680] Length = 224 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ + ++ + M++ G+GLAA Q+GV R+ VI+ Sbjct: 34 PIVAAGDPVLRRGAEPYDGQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVIE 93 Query: 63 LQDH---------AHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 P V +NP D + + EGCLS+P ++A V R A + + Sbjct: 94 DPAPVPEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARPARVRL 153 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +D + + G A +QHE DHL+G+L++D Sbjct: 154 TALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDRAE 192 >gi|332525977|ref|ZP_08402118.1| peptide deformylase [Rubrivivax benzoatilyticus JA2] gi|332109528|gb|EGJ10451.1| peptide deformylase [Rubrivivax benzoatilyticus JA2] Length = 188 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ D L RV++P+E + + L+ +M+E M + G GLAA Q+GV +LV Sbjct: 11 MPVHEILKMGDARLLRVAQPVEAFDTPALHALVADMIETMAAAHGAGLAAPQVGVDLQLV 70 Query: 60 VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 V + + V NP I SD+ EGCLS+P R V R A I Sbjct: 71 VFGFERNERYPEAPAVPMTVLCNPVITPLSDETVDGWEGCLSVPGLRGVVPRFARIRYTG 130 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ ++ L + Sbjct: 131 FDAQGRPIEREAEGFHARVVQHECDHLIGRLYPTRMNDLTK 171 >gi|284045178|ref|YP_003395518.1| peptide deformylase [Conexibacter woesei DSM 14684] gi|283949399|gb|ADB52143.1| peptide deformylase [Conexibacter woesei DSM 14684] Length = 167 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 3/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + F DP+L+ + + + + D+ I M E+M GIGLAA Q+G L R++V + Sbjct: 2 RYVRQFGDPVLKSRAMTVSRFDDDLREQIRGMGEIMNDAFGIGLAATQLGKLNRVLVYRV 61 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + + +NP++ D+ +EGCLS+ DV+R + VR D I Sbjct: 62 EQDSPA---IALVNPELEWSGDELETAEEGCLSLRGVLVDVERPVHVRVRAQDEQGSTVI 118 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A GL A +QHE+DHL+G+L +D SR +R + + + Sbjct: 119 IEASGLEARVIQHEMDHLDGVLILDRTSRDQRKQAMRALRE 159 >gi|260555892|ref|ZP_05828112.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606] gi|260410803|gb|EEX04101.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606] Length = 160 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 91/158 (57%), Gaps = 8/158 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + R+ Sbjct: 3 VVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRV 62 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + V+ Sbjct: 63 IIVASRPNPRYPDAPEMNAVVMVNPEILEFSSEMCLGEEGCLSVPDERGQVERAEMVKVK 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+ + G A +QHE+DHL+GILF++ +S Sbjct: 123 YLTLQGETVETIFHGFPARIVQHEVDHLDGILFVERIS 160 >gi|297171900|gb|ADI22887.1| N-formylmethionyl-tRNA deformylase [uncultured Rhizobium sp. HF0500_35F13] Length = 194 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 1/161 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P P LRR + ++++++ I M E+MY +GIGLAA Q+ + R +++ Sbjct: 3 ILHYPHPALRRKCSIVRRVDAELRETISEMYELMYEANGIGLAANQVDLPLRFFIVNTAG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +VFINP + + + +EGCLSIP V R I V+ + Q Sbjct: 63 DRDEGEELVFINPVL-SQPEGRGEEEEGCLSIPAVYGKVMRPTTIHVQAYNLEGQPFSAE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 LA +QHE DHL+G+LF D +S + + + + Sbjct: 122 LSETLARVVQHETDHLDGVLFTDRISHDDKPRVDLLLEEFA 162 >gi|255319189|ref|ZP_05360406.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262379692|ref|ZP_06072848.1| polypeptide deformylase [Acinetobacter radioresistens SH164] gi|255303582|gb|EET82782.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262299149|gb|EEY87062.1| polypeptide deformylase [Acinetobacter radioresistens SH164] Length = 159 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEK--INSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + +L + + + N++ + L M M +G+G+AA Q+ + Sbjct: 1 MSISLPVAQRGEKVLTLKAAEVSENEFNTEWLRQLAQAMHTTMLEQNGVGIAAPQVYISK 60 Query: 57 RLVVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ + A +V +NP+I+ FS + S+ +EGCLS+ D R V+R+ + Sbjct: 61 RIIIVASRSNPRYPDAPEMEAVVMVNPEILEFSRETSLGEEGCLSVSDVRGTVERAETVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + Y+ + G A +QHE+DHLNGILF++ L Sbjct: 121 LCYLTLEGEPVETIYKGFPARIIQHEIDHLNGILFVERL 159 >gi|91794262|ref|YP_563913.1| peptide deformylase [Shewanella denitrificans OS217] gi|91716264|gb|ABE56190.1| Peptide deformylase [Shewanella denitrificans OS217] Length = 168 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 5/159 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ I +PIL R++ + + ++ ++ L D+ML M + +G+G+AA Q+ + V+ Sbjct: 6 ILPIAITGEPILNRIAVKVSQFDASLIQLADDMLATMMAANGVGIAAGQVHSPLAMFVMA 65 Query: 63 LQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + + N P V INP+I+++S EGCLSIPD R + RS I R+ + Sbjct: 66 SRPNERYPNAPVTEPRVIINPQILSYSTQTQAGIEGCLSIPDSRMSIVRSQQIDTRFQNL 125 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A QHE DH+ GI I+ L++ ++ Sbjct: 126 KGEFIEQSFSDFEARIFQHEFDHIKGITLIERLAQQQKQ 164 >gi|325121302|gb|ADY80825.1| peptide deformylase 2 [Acinetobacter calcoaceticus PHEA-2] Length = 160 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 8/158 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + IL+ + P+ ++NS+ + L D M M +G+G+AA Q+ + R+ Sbjct: 3 VVLPVAKRGEDILKLTAAPVSVNELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRV 62 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A +V +NP+I+ FSD+ + +EGCLS+PD R V+R+ + V+ Sbjct: 63 IIVASRPNPRYPDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVKVK 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 123 YLTLQGETVETNFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|295835488|ref|ZP_06822421.1| peptide deformylase [Streptomyces sp. SPB74] gi|295825514|gb|EFG64289.1| peptide deformylase [Streptomyces sp. SPB74] Length = 221 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + P E + L+ M M G+GLAA QIGV RL V++ Sbjct: 32 PIVAAGDPVLRTPAAPYEGQLPGPLLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 91 Query: 63 LQ-------DHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + P+ V +NP + +++ EGCLS+P ++A V R A + + Sbjct: 92 DPATVPEEVRRMRGREPLPYRVLVNPHYAPAGERRALFYEGCLSVPGWQAVVARHAVVRL 151 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R D + G A +QHE DHL+G L++D Sbjct: 152 RAEDEHGTALDEEVGGWAARIVQHETDHLDGTLYVDR 188 >gi|295839268|ref|ZP_06826201.1| peptide deformylase [Streptomyces sp. SPB74] gi|295827384|gb|EDY42650.2| peptide deformylase [Streptomyces sp. SPB74] Length = 250 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 9 FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + IL R + L+ +M MY +G GLAA Q+GV RL V D D Sbjct: 64 VGEEILARRCAEATVFGTPGLARLVADMFLTMYLAEGAGLAANQVGVDLRLFVYDRFDDE 123 Query: 68 HRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++ +N I + ++ + EGCLS+P R + R+ +R +D + + I Sbjct: 124 GARHVGHVLNRVIDEAASGRALVEDVEGCLSVPGARHGLARADRTVLRGVDRDGRPVTIE 183 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 G A CLQHE DHLNG++++D L + R + ++ + + RD Sbjct: 184 GTGYFARCLQHETDHLNGMVYVDRLGKRARRAV---LADMAEARD 225 >gi|328955668|ref|YP_004373001.1| peptide deformylase [Coriobacterium glomerans PW2] gi|328455992|gb|AEB07186.1| peptide deformylase [Coriobacterium glomerans PW2] Length = 185 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 81/154 (52%), Gaps = 2/154 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ PD LRR PIE+I +I L +M + M+ G GLAA Q+G +++V Sbjct: 1 MEINGIVLSPDERLRRECAPIEEITPEIERLASHMKQEMFENAGCGLAAPQVGQTVQMIV 60 Query: 61 IDLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ID + +P V INP II SD + + EGCLSIP ++ R + V D +A Sbjct: 61 IDTSYTSREDYDPYVLINPVIIEQSDRLTAFSEGCLSIPGISCEIYRPDHVVVEAYDLDA 120 Query: 120 QHQIIYADG-LLATCLQHELDHLNGILFIDHLSR 152 A G L+ CLQHE+DHL GI + L Sbjct: 121 NLIRYEAAGDLMCVCLQHEIDHLKGITMFERLDP 154 >gi|255630300|gb|ACU15506.1| unknown [Glycine max] Length = 221 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 72/136 (52%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDP LR ++ I + + L+ M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 77 IVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVG 136 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP++ +S +++ EGCLS P ADVKR + + N + Sbjct: 137 EHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARGINGTMFSVN 196 Query: 126 ADGLLATCLQHELDHL 141 L A QHE DHL Sbjct: 197 LSDLPARIFQHEFDHL 212 >gi|293608925|ref|ZP_06691228.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829498|gb|EFF87860.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 160 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 8/158 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + R+ Sbjct: 3 VVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRV 62 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A +V +NP+I+ FSD+ + +EGCLS+PD R V+R+ + V+ Sbjct: 63 IIVASRPNLRYPDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVKVK 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 123 YLTLQGETVETIFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|269796214|ref|YP_003315669.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM 10542] gi|269098399|gb|ACZ22835.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM 10542] Length = 211 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 9/158 (5%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V P+LR+ + + ++ + L+D+M M G+GLAA QIG+ ++ V+ Sbjct: 22 VLPIVQAGHPVLRQPAAAYDGQLGDLLPALLDSMRLTMVDAPGVGLAAPQIGIGLQIAVL 81 Query: 62 DLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++P V +NP D+ + EGCLS+ Y+A V R + + Sbjct: 82 HDAGSTDPEDPRERTPLEHRVLVNPSYEGVGDEVRSFYEGCLSVEGYQAVVARHRTVRLT 141 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + G A +QHE DHL G L+IDH Sbjct: 142 GQDETGRALDEQLTGWPARIVQHETDHLRGQLYIDHAE 179 >gi|320108553|ref|YP_004184143.1| peptide deformylase [Terriglobus saanensis SP1PR4] gi|319927074|gb|ADV84149.1| peptide deformylase [Terriglobus saanensis SP1PR4] Length = 187 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 18/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + DP+LR+ +R + E ++ I L+ NM E M+ G+GLAA QIG +L Sbjct: 1 MLLNICTAGDPVLRKQARALSQEEILSPAIQELVKNMRETMWRAPGVGLAAPQIGESLQL 60 Query: 59 VVIDLQDHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 V++ + H+K + + NPKI S Y EGCLSIP + A V Sbjct: 61 AVLEGRPQFHKKMNEAEVKEWQSTPYDYLAIFNPKIELLPAHVSAY-EGCLSIPGFMASV 119 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 RS + V ++ A+ Q+I A+G A LQHE+DHLNG+L+ID + Sbjct: 120 PRSQSVRVTCLNEKAEPQVIEAEGWFARILQHEIDHLNGVLYIDRME 166 >gi|167747469|ref|ZP_02419596.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662] gi|167652831|gb|EDR96960.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662] Length = 153 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + DPIL++ + + +++ +D++++ ++S+ +G LAA Q G+L R++ Sbjct: 1 MAVRKIRTGNDPILKKKCKTVPEVDDKARQQLDDLMDTLHSSDNGAALAANQAGILRRMI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID + + + +NP I+ S EGCLS P+ R A + V +D N Sbjct: 61 VIDYEGYYLK-----LVNPVIVESSGSQECV-EGCLSFPNRFGKTIRPARVKVEALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 G +A C HE+DHL+G +FID + Sbjct: 115 HEVSYTVVGEMAKCFCHEIDHLDGEVFIDKV 145 >gi|289677568|ref|ZP_06498458.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 121 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 58/121 (47%), Positives = 80/121 (66%), Gaps = 2/121 (1%) Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 AA Q+ V R+VV+DL + R PMV INP+I +D+ YQEGCLS+P + +V R Sbjct: 1 AATQVNVHKRVVVMDLSE--DRSEPMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRP 58 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + V+ +D + + + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + Sbjct: 59 QKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 118 Query: 168 L 168 L Sbjct: 119 L 119 >gi|83855042|ref|ZP_00948572.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] gi|83842885|gb|EAP82052.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] Length = 145 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 82/142 (57%), Gaps = 2/142 (1%) Query: 23 KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT 82 +IN +I L D+M++ M + G+GLAA QIGV ++ V+D ++ + NP +I Sbjct: 3 EINDEIRALWDDMIDTMDAMPGVGLAAPQIGVSLQVAVVDASQARDKR--IRLANPVVID 60 Query: 83 FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 S + Y+E ++P A ++R + VRY+D GL AT +QH++DHL Sbjct: 61 ASAIMNEYEEASPNLPGISAKIRRPRGVKVRYLDEQGATVTRDFVGLEATSVQHQIDHLA 120 Query: 143 GILFIDHLSRLKRDMITKKMSK 164 G +F+D+LS+ +RDM+ +K K Sbjct: 121 GKMFVDNLSKTRRDMLLRKARK 142 >gi|84060919|ref|YP_444131.1| hypothetical protein O2ColV76 [Escherichia coli] gi|3288155|emb|CAA11508.1| hypothetical protein [Escherichia coli] gi|76781994|gb|AAX22071.2| conserved hypothetical protein [Escherichia coli] Length = 149 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 88/134 (65%), Gaps = 4/134 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ IGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAES-IGLAATQVDIHQRIIV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 60 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 116 Query: 121 HQIIYADGLLATCL 134 + ADGLLA C+ Sbjct: 117 PFELEADGLLAICI 130 >gi|227517269|ref|ZP_03947318.1| peptide deformylase [Enterococcus faecalis TX0104] gi|229548020|ref|ZP_04436745.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|307270561|ref|ZP_07551859.1| peptide deformylase [Enterococcus faecalis TX4248] gi|307284851|ref|ZP_07565007.1| peptide deformylase [Enterococcus faecalis TX0860] gi|312902126|ref|ZP_07761386.1| peptide deformylase [Enterococcus faecalis TX0470] gi|312905430|ref|ZP_07764544.1| peptide deformylase [Enterococcus faecalis TX0635] gi|312906688|ref|ZP_07765688.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|227075276|gb|EEI13239.1| peptide deformylase [Enterococcus faecalis TX0104] gi|229306896|gb|EEN72892.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|306503110|gb|EFM72367.1| peptide deformylase [Enterococcus faecalis TX0860] gi|306513142|gb|EFM81776.1| peptide deformylase [Enterococcus faecalis TX4248] gi|310627336|gb|EFQ10619.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|310631159|gb|EFQ14442.1| peptide deformylase [Enterococcus faecalis TX0635] gi|311290790|gb|EFQ69346.1| peptide deformylase [Enterococcus faecalis TX0470] gi|315026429|gb|EFT38361.1| peptide deformylase [Enterococcus faecalis TX2137] gi|315146582|gb|EFT90598.1| peptide deformylase [Enterococcus faecalis TX4244] gi|315161200|gb|EFU05217.1| peptide deformylase [Enterococcus faecalis TX0645] gi|315171198|gb|EFU15215.1| peptide deformylase [Enterococcus faecalis TX1342] gi|315577116|gb|EFU89307.1| peptide deformylase [Enterococcus faecalis TX0630] gi|315581154|gb|EFU93345.1| peptide deformylase [Enterococcus faecalis TX0309A] Length = 150 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 4/134 (2%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI++ + + R I Sbjct: 2 KAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGRFE---LI 58 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP II S+ EGCLSIP+ V+R+ +TVRY D + + A G LA QH Sbjct: 59 NPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQH 117 Query: 137 ELDHLNGILFIDHL 150 E+DHLNG LFID + Sbjct: 118 EIDHLNGELFIDKM 131 >gi|308177432|ref|YP_003916838.1| peptide deformylase [Arthrobacter arilaitensis Re117] gi|307744895|emb|CBT75867.1| peptide deformylase [Arthrobacter arilaitensis Re117] Length = 213 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 12/161 (7%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V P+LR+ + E + L++ M + MY G+GLAA Q+G+ ++ V Sbjct: 26 VLPIVQLGHPVLRQQAVAYENQLPTDLLEELLEAMRQTMYDAPGVGLAAPQVGIPLQIAV 85 Query: 61 I-DLQDHAHR------KNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + DL + P+ + NP+ ++ S+ +V+ EGCLS ++ V R A I Sbjct: 86 LEDLYPIPEEAATMREREPLEYFEIFNPEYVSASEREAVFYEGCLSFDGFQGVVTRPADI 145 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Y D + Q G A +QHE DHL+G ++ID Sbjct: 146 SATYKDRDGQEITRSFSGWQARIVQHEADHLSGTVYIDKAE 186 >gi|15807421|ref|NP_296154.1| peptide deformylase [Deinococcus radiodurans R1] gi|23396556|sp|Q9RRQ4|DEF_DEIRA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|6460249|gb|AAF11975.1|AE002073_5 polypeptide deformylase [Deinococcus radiodurans R1] Length = 232 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 24/189 (12%) Query: 3 KKPLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIG 53 P+ ++ DPILRR +R + ++ + + D MLE M+ G+GLAA QIG Sbjct: 21 VYPMRLYGDPILRRKARNLTAADTLHVPGFEPQTVREVADTMLETMFEERGVGLAAPQIG 80 Query: 54 VLYRLVVI-----DLQDHAHRKNPM--------VFINPKIITFSDDFS-VYQEGCLSIPD 99 + R+ V D +++ ++ P+ V +NP + + YQEGCLSIP Sbjct: 81 LPVRMFVAVEYADDEEENEGQETPLRSRVLREYVMLNPVVKVINKKKDKSYQEGCLSIPG 140 Query: 100 YRAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 D V R+ + V Y D + Q + I A+ LA QHE DHL+G LF+DHL + Sbjct: 141 IYEDGVPRARQVRVDYTDLDGQPRSIEAEDYLARVFQHETDHLDGKLFLDHLPADITEDH 200 Query: 159 TKKMSKLVQ 167 K + ++ Q Sbjct: 201 RKDLLRIQQ 209 >gi|260551188|ref|ZP_05825391.1| peptide deformylase 2 [Acinetobacter sp. RUH2624] gi|260405793|gb|EEW99282.1| peptide deformylase 2 [Acinetobacter sp. RUH2624] Length = 160 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 92/158 (58%), Gaps = 8/158 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + R+ Sbjct: 3 VVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRV 62 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A + +V +NP+I+ FS++ + +EGCLS+PD R V+R+ + V+ Sbjct: 63 IIVASRPNPRYPDAPEMDAVVMVNPEILEFSNEVCLGEEGCLSVPDERGQVERAEMVKVK 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 123 YLTLQGETIESVFHGFPARIVQHEIDHLNGILFVERIS 160 >gi|317471201|ref|ZP_07930569.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] gi|316901307|gb|EFV23253.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] Length = 153 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + DPIL++ + + +++ +D++++ ++S +G LAA Q G+L R++ Sbjct: 1 MAVRKIRTGNDPILKKKCKTVPEVDDKARQQLDDLMDTLHSAENGAALAANQAGILRRMI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID H + +NP I+ S EGCLS P+ R A +TV +D + Sbjct: 61 VID-----HEGYYLKLVNPVIVESSGSQECV-EGCLSFPNRFGKTIRPAKVTVEALDEHG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 G +A C HE+DHL+G +FID + Sbjct: 115 HEVSYTVVGEMAKCFCHEIDHLDGEVFIDKV 145 >gi|119773777|ref|YP_926517.1| peptide deformylase [Shewanella amazonensis SB2B] gi|119766277|gb|ABL98847.1| Peptide deformylase [Shewanella amazonensis SB2B] Length = 174 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 5/152 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ I DP+L + + P+ + + L ++ M G+G+AA QIGV RL ++ + Sbjct: 8 PIAITGDPVLYQKAAPVTVFDDSLERLSQTLMATMLQAKGVGIAAPQIGVSQRLFIVASR 67 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + PMV +NP +++ S ++ +EGCLS+P R + R ++ ++ D Sbjct: 68 PNERYPDAPLMEPMVMVNPALLSGSSEWESSEEGCLSVPGKRLSIARHRWVEAKWQDLQG 127 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 DG +A QHELDHL+GI ++ ++ Sbjct: 128 NAYSGRLDGFIARIFQHELDHLDGITLLERVT 159 >gi|54024621|ref|YP_118863.1| peptide deformylase [Nocardia farcinica IFM 10152] gi|54016129|dbj|BAD57499.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152] Length = 190 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I DP L ++P+ + ++ L+D++ + + + +G GLAA QIG + V Sbjct: 1 MAIRPILIAGDPRLTTPAQPVTVFDDELAALVDDLFDTLAAAEGAGLAANQIGDPRAVFV 60 Query: 61 IDLQDHAHRKNPMVFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL DH HR V +NP + D EGCLS+P R+ V + Sbjct: 61 YDLVDHGHR-YRGVVVNPVAETSALPETMPDPEGDLEGCLSVPGEWYPTGRADRARVTGL 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMIT 159 D + G LA CLQHE DHL G L+++ L +R R MI Sbjct: 120 DATGAPITVEGTGYLARCLQHETDHLAGRLYLERLLGRHARAARRMIK 167 >gi|159899991|ref|YP_001546238.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] gi|159893030|gb|ABX06110.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] Length = 175 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 13/178 (7%) Query: 1 MVKKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54 M PL+ +P+LR+ + P + + ++ ++++M + + G G+AA QIGV Sbjct: 1 MAVVPLIELGNPLLRQPATPFADPTSPEVARILNDMRDTLADMRQRIGYGRGIAAPQIGV 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 L RL++ID D +V +NP+ +S + E C S P V+R +TV Sbjct: 61 LKRLILIDTPDTN-----LVLVNPRFERWSREEDERYESCFSFPGIWGLVQRPLGVTVVA 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQLRD 170 + Q I A G L+ +QHE+DHL+G +++D L T++ K + + R+ Sbjct: 116 YTLAGEEQRIEASGSLSRIIQHEMDHLDGFVWLDRGPDLHSLCTTQEYEKRYISRERE 173 >gi|320333260|ref|YP_004169971.1| peptide deformylase [Deinococcus maricopensis DSM 21211] gi|319754549|gb|ADV66306.1| Peptide deformylase [Deinococcus maricopensis DSM 21211] Length = 214 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 23/188 (12%) Query: 3 KKPLVIFPDPILRRVSRPIEKINS----------DIMNLIDNMLEVMYSTDGIGLAAVQI 52 P+ ++ DPILR+ +R IE + + + + MLE MY G+GLAA Q+ Sbjct: 9 VYPIRLYGDPILRKKARAIEDLQAPLTIPGFAPAALAQVARTMLETMYDAHGVGLAAPQV 68 Query: 53 GVLYRLVV---IDLQDHAHRKNPM--------VFINPKIITFSDDFSV-YQEGCLSIPDY 100 G+ R+ V + ++ P+ V INP + + YQEGCLSIP Sbjct: 69 GLGVRMFVAAEYADDEDEGQETPLRSRVLREFVAINPVLEVLNKKKDSHYQEGCLSIPGI 128 Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + VKR + + Y++ + Q +++ A+ LA QHE+DHL+G F+D L D Sbjct: 129 YEEGVKRDRAVRMTYLNLDGQRKVVEAEDYLARVFQHEVDHLDGRFFLDRLPAEVTDDHR 188 Query: 160 KKMSKLVQ 167 K ++ + + Sbjct: 189 KDLAAMQR 196 >gi|153953994|ref|YP_001394759.1| peptide deformylase [Clostridium kluyveri DSM 555] gi|219854608|ref|YP_002471730.1| hypothetical protein CKR_1265 [Clostridium kluyveri NBRC 12016] gi|146346875|gb|EDK33411.1| Hypothetical protein CKL_1369 [Clostridium kluyveri DSM 555] gi|219568332|dbj|BAH06316.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 147 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 95/152 (62%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ + D +LR+ SR I+ IN I+ L+D+M E +Y G+GLAA Q+GVL R VV Sbjct: 1 MALRNVIKYGDELLRKKSRKIDVINDRILTLLDDMEETLYKECGVGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II +S+ + EGCLSIP+ + +VKR + V+ ++ + Sbjct: 61 IDIGEGIFK-----LINPEII-YSEGSYIDVEGCLSIPEIQGEVKRPKKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 II + LLA HE+DHL+GILF+D + + Sbjct: 115 EVIIEGEDLLARAFCHEIDHLDGILFVDKMIK 146 >gi|168007592|ref|XP_001756492.1| predicted protein [Physcomitrella patens subsp. patens] gi|162692531|gb|EDQ78888.1| predicted protein [Physcomitrella patens subsp. patens] Length = 191 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 18/164 (10%) Query: 7 VIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-D 62 V DP+L + + +++ N S I I++M++VM + G+GLAA QIGV +++V+ D Sbjct: 1 VQAGDPVLHKPAEEVKRENIGSSLIEKTINDMVDVMRAGPGVGLAAPQIGVPLQIIVLED 60 Query: 63 LQDHAHRKNP-------------MVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSA 108 ++ +P +V INPKI + + EGCLS+ YRA V+R + Sbjct: 61 TKELMSYTSPEECEAQQRSPFDLLVIINPKIEKKEGRGTAYFFEGCLSVEGYRALVERHS 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V + + + + A G A LQHE DHL G L++D + + Sbjct: 121 EVEVTGLGRDGRPLHLTAKGWKARILQHEYDHLQGTLYVDKMVK 164 >gi|256789557|ref|ZP_05527988.1| peptide deformylase [Streptomyces lividans TK24] Length = 222 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ + ++ + M++ G+GLAA Q+GV R+ VI+ Sbjct: 29 PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 88 Query: 63 LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + V +NP + + EGCLS+P ++A V R A + + Sbjct: 89 DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 148 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R D + + G A +QHE DHL+G L++D Sbjct: 149 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDRAE 187 >gi|18310615|ref|NP_562549.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110800596|ref|YP_696318.1| polypeptide deformylase [Clostridium perfringens ATCC 13124] gi|168207151|ref|ZP_02633156.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|168213602|ref|ZP_02639227.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|169342870|ref|ZP_02863901.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|23396560|sp|Q8XJX0|DEF2_CLOPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|18145296|dbj|BAB81339.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110675243|gb|ABG84230.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|169299127|gb|EDS81199.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|170661437|gb|EDT14120.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|170714896|gb|EDT27078.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] Length = 155 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V L++VS P++ +N ++ LI ++ + + + +GIGLAA QI V R+V Sbjct: 1 MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ D N V INP++ S + EGCLS + V+R + ++ ++ + Sbjct: 60 INFGDGE---NEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ A LLA C HE+DHL GI+++D + Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149 >gi|302555792|ref|ZP_07308134.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302473410|gb|EFL36503.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 214 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ ++ ++ + M + G+GLAA Q+GV R+ VI+ Sbjct: 25 PIVAAGDPVLRRGTEPYDGQLAPELLARFVEALRVTMRAAPGVGLAAPQVGVPLRIAVIE 84 Query: 63 LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + V +NP + + EGCLS+P ++A V R A + + Sbjct: 85 DPAPVPEEVRLARGRVPLPFRVLVNPAYAPVGGARAAFFEGCLSVPGWQAVVARPAEVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + + G A +QHE DHL+G+L++D Sbjct: 145 TGQDEHGRALDEVFTGWPARIVQHETDHLDGVLYLDRAE 183 >gi|212715793|ref|ZP_03323921.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM 16992] gi|212661160|gb|EEB21735.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM 16992] Length = 149 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 6/154 (3%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR PI++I + +L+ ++L+ + GL+A QIGV R ++ Sbjct: 2 LRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVGLRAFSYNIDGKIGY---- 57 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 +NP + S + EGCLS+P +R+ + VR +D + + ++ G++ Sbjct: 58 -VLNPVLEETSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGKTVVLEGHGIMGRM 115 Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LQHE DHL+G +++D L + +R + M + Sbjct: 116 LQHETDHLDGHVYLDRLEKEERREAMRYMRNHRK 149 >gi|289773445|ref|ZP_06532823.1| polypeptide deformylase [Streptomyces lividans TK24] gi|289703644|gb|EFD71073.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 218 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ + ++ + M++ G+GLAA Q+GV R+ VI+ Sbjct: 25 PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84 Query: 63 LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + V +NP + + EGCLS+P ++A V R A + + Sbjct: 85 DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R D + + G A +QHE DHL+G L++D Sbjct: 145 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDRAE 183 >gi|239626610|ref|ZP_04669641.1| peptide deformylase [Clostridiales bacterium 1_7_47_FAA] gi|239516756|gb|EEQ56622.1| peptide deformylase [Clostridiales bacterium 1_7_47FAA] Length = 153 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 7/156 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + DPILR+ + ++ ++ I L+D+M E ++ T +G LAA Q+G+L RLV Sbjct: 1 MAIRNIRYDNDPILRKRCKEVKTVDDKIRLLLDDMAETLHHTENGAALAANQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID D+ + +NP+II +S EGCLS P+ R +T++ +D N Sbjct: 61 VIDYCDYHLK-----LVNPQIIGYSG-VQECIEGCLSFPNRFVKTIRPQKVTIQSLDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + II + +A C HEL+HL+GI+F+D R Sbjct: 115 KEIIITGENEMAKCFCHELEHLDGIIFLDKAIEEVR 150 >gi|254422211|ref|ZP_05035929.1| peptide deformylase [Synechococcus sp. PCC 7335] gi|196189700|gb|EDX84664.1| peptide deformylase [Synechococcus sp. PCC 7335] Length = 176 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 7/160 (4%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M K + DP+LR + + + + LID ++ + +G+G+AA Q+ +L Sbjct: 1 MTKILKIAELGDPVLRSPADKVCDVHTPAVQTLIDQLISLTLERNGVGIAAPQVSHSLQL 60 Query: 59 VVIDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ + HA + +P INP+I+ +SD + EGCLS+P R VKRS I V Sbjct: 61 FIVASRPNLRYLHAPKMDPTAMINPQILHYSDAVTAGWEGCLSVPGMRGLVKRSKEIEVS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 Y D Q Q +A +QHE DH+NG +F+D + + Sbjct: 121 YTDRYGQQQQQIFTDFVARIIQHEYDHINGKVFLDRIDSV 160 >gi|110801598|ref|YP_698920.1| polypeptide deformylase [Clostridium perfringens SM101] gi|110682099|gb|ABG85469.1| peptide deformylase [Clostridium perfringens SM101] Length = 155 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V L++VS P++ +N ++ LI ++ + + + +GIGLAA QI V R+V Sbjct: 1 MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ D N V INP++I S + EGCLS + V+R + ++ ++ + Sbjct: 60 INFGDGE---NEYVLINPEVIGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ A LLA C HE+DHL GI+++D + Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149 >gi|320104581|ref|YP_004180172.1| peptide deformylase [Isosphaera pallida ATCC 43644] gi|319751863|gb|ADV63623.1| peptide deformylase [Isosphaera pallida ATCC 43644] Length = 230 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 8/155 (5%) Query: 3 KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 ++P++ P LR+ +R +E LI +M + + G+GLA QIGV R++ Sbjct: 19 RRPILWLGHPALRQTARVVEPSQLKTDAFRRLIGDMAQTLEDEGGVGLAGPQIGVDQRVI 78 Query: 60 VIDL----QDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + +D + +P+ FINP I+ S EGCLSIP A V R + + Y Sbjct: 79 LAGAFPSERDPSRPNHPVRAFINPVIVARSSQVGAAYEGCLSIPGILARVVRPHAVEIEY 138 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +D NA + + A+G LA LQHE+DHL+G+L +DH Sbjct: 139 LDLNAMPRRLRAEGFLARVLQHEIDHLDGVLIVDH 173 >gi|21219403|ref|NP_625182.1| peptide deformylase [Streptomyces coelicolor A3(2)] gi|23396576|sp|Q9RD27|DEF1_STRCO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|6562865|emb|CAB62674.1| polypeptide deformylase [Streptomyces coelicolor A3(2)] Length = 218 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ + ++ + M++ G+GLAA Q+GV R+ VI+ Sbjct: 25 PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84 Query: 63 LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + V +NP + + EGCLS+P ++A V R A + + Sbjct: 85 DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R D + + G A +QHE DHL+G L++D Sbjct: 145 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDRAE 183 >gi|291435575|ref|ZP_06574965.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291338470|gb|EFE65426.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] Length = 214 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 18/163 (11%) Query: 5 PLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+V DP+LRR + P + + ++ + M++ G+GLAA Q+GV R+ Sbjct: 25 PIVAAGDPVLRRGAEP---FDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIA 81 Query: 60 VID----LQDHAHRKNPMV------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 VI+ + + R V +NP + + EGCLS+P Y+A V R A Sbjct: 82 VIEDPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAE 141 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + D + + G A +QHE+DHL+G+L++D Sbjct: 142 VRLTGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLDRAEP 184 >gi|90410436|ref|ZP_01218452.1| hypothetical polypeptide deformylase [Photobacterium profundum 3TCK] gi|90328677|gb|EAS44961.1| hypothetical polypeptide deformylase [Photobacterium profundum 3TCK] Length = 178 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 2 VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 ++ +P+LR + + +IN + L+ ++ ++M S G+G+AA Q+G R Sbjct: 3 ASLEIIQLGNPLLRVPAEALSTTQINVTL-PLLASLEQIMLSHQGVGIAAPQVGESLRAF 61 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ D HA P + INP+++ SD EGCLSIP RA + R I V Y Sbjct: 62 IVASRPNDRYPHAPLMEPTIMINPELLWHSDLMEKDWEGCLSIPGIRAKINRYTHIRVSY 121 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ +A QHELDHLNGI+F+D +L Sbjct: 122 LNVLGDVIETEFTDFIARIFQHELDHLNGIVFLDRADKL 160 >gi|319941618|ref|ZP_08015942.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] gi|319804848|gb|EFW01702.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] Length = 179 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 10/162 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ +P+L + + P+ + L+ +M + M++ G+G+AA Q+GV R++ Sbjct: 1 MVLEVMRLGEPVLMKEALPVRDFGSPRLRKLVADMWDTMHAEGGVGIAAPQVGVSERIIC 60 Query: 61 IDLQ-----DHAHRKNPMVFINPK----IITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + A V INP + +DD+ EGCLS+P R V R+ I Sbjct: 61 FGFEASSRYPDAPAVPQTVLINPTVELLLEGTADDWEDGWEGCLSVPGMRGVVPRARRIR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + A+ A +QHE DHL GI++ + Sbjct: 121 YTGFGLDGETIEREAEEFHARVVQHEFDHLKGIVYPMRIKDW 162 >gi|195952867|ref|YP_002121157.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] gi|195932479|gb|ACG57179.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] Length = 164 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 102/165 (61%), Gaps = 7/165 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVV 60 + ++++P+P+L+ S+ + KI+ +I+ I+N+ E MYS D G+A+ Q+GVL +VV Sbjct: 1 MIYEILVYPNPLLKEKSKDVNKIDDNIIKHIENLKETMYSKDFCTGIASSQVGVLQNIVV 60 Query: 61 IDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +D + + INP II S+D +++EGCLS+P+Y A+++R ++V+ +D Sbjct: 61 MDASRFRKPPKNHHGLITLINPVII-KSEDSIIFREGCLSVPEYTANIQRYKHVSVKALD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 I+ +G A QHELDHLNGILF+D L+ L ++ +K Sbjct: 120 EKENEIILDLEGPEAVLFQHELDHLNGILFLDRLTSLD-NLFKRK 163 >gi|303243293|ref|ZP_07329698.1| peptide deformylase [Acetivibrio cellulolyticus CD2] gi|302589164|gb|EFL59007.1| peptide deformylase [Acetivibrio cellulolyticus CD2] Length = 186 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 10/144 (6%) Query: 14 LRRVSRPIEKINSDIMN-----LIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHA 67 LR SR I+K ++ I ++ E +Y + G+GLAA Q+GV RLV ID+ Sbjct: 21 LRNPSRQIQK--EELREQWFIDFIKDLFETLYYSPTGVGLAAPQVGVHIRLVAIDMDRDG 78 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 KNP INP +D + E CLS+P + V+R I + Y D N + +Y + Sbjct: 79 --KNPFPLINPTYEAVNDSIVLSNESCLSVPGFVGKVQRHEKIKLTYWDVNGEEIELYVE 136 Query: 128 GLLATCLQHELDHLNGILFIDHLS 151 G A +QHE+DHLNG+L+ID + Sbjct: 137 GFKAKVIQHEIDHLNGVLYIDRID 160 >gi|229547451|ref|ZP_04436176.1| peptide deformylase [Enterococcus faecalis TX1322] gi|307276655|ref|ZP_07557773.1| peptide deformylase [Enterococcus faecalis TX2134] gi|229307483|gb|EEN73470.1| peptide deformylase [Enterococcus faecalis TX1322] gi|306506765|gb|EFM75917.1| peptide deformylase [Enterococcus faecalis TX2134] gi|315028353|gb|EFT40285.1| peptide deformylase [Enterococcus faecalis TX4000] gi|315144145|gb|EFT88161.1| peptide deformylase [Enterococcus faecalis TX2141] gi|315159377|gb|EFU03394.1| peptide deformylase [Enterococcus faecalis TX0312] Length = 150 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 55/134 (41%), Positives = 79/134 (58%), Gaps = 4/134 (2%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI++ + + I Sbjct: 2 KAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGHFE---LI 58 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP II S+ EGCLSIP+ V+R+ +TVRY D + + A G LA QH Sbjct: 59 NPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQH 117 Query: 137 ELDHLNGILFIDHL 150 E+DHLNG LFID + Sbjct: 118 EIDHLNGELFIDKM 131 >gi|168209296|ref|ZP_02634921.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|182626083|ref|ZP_02953844.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] gi|170712476|gb|EDT24658.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|177908604|gb|EDT71125.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] Length = 155 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V L++VS P++ +N ++ LI ++ + + + +GIGLAA QI V R+V Sbjct: 1 MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIKDLKDTLATVEGIGLAAPQIAVNKRVVY 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ D N V INP++ S + EGCLS + V+R + ++ ++ + Sbjct: 60 INFGDGE---NEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ A LLA C HE+DHL GI+++D + Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149 >gi|220926453|ref|YP_002501755.1| peptide deformylase [Methylobacterium nodulans ORS 2060] gi|219951060|gb|ACL61452.1| peptide deformylase [Methylobacterium nodulans ORS 2060] Length = 165 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M L+ +PDP LR+ + P + + + ++ E + + IGL A G+ R+ V Sbjct: 1 MTILSLLRYPDPRLRQPAPPAALPDPGVSAVAADLAETLAAHGAIGLTAPHAGLPVRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I L A ++NP+++ S + + ++EG +++P +V+R A + VR+ D + Sbjct: 61 IRLGPDAP---LATYVNPEVVWASSETARHREGSVAMPGVDEEVERPARVRVRFQDLDGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I A+G LA CLQHE+D L+G+ + + LSRLKR+ + K+ K+ + Sbjct: 118 PRQIAAEGFLAACLQHEIDQLDGVFWTERLSRLKRERLLKRFGKVQRG 165 >gi|134296033|ref|YP_001119768.1| peptide deformylase [Burkholderia vietnamiensis G4] gi|134139190|gb|ABO54933.1| peptide deformylase [Burkholderia vietnamiensis G4] Length = 177 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 6/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L ++ P+ + + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEIAEPVGQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGNNNRYPDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYVGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D A+G A +QHE DHL G L+ ++ R T Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFT 164 >gi|266624813|ref|ZP_06117748.1| peptide deformylase [Clostridium hathewayi DSM 13479] gi|288863310|gb|EFC95608.1| peptide deformylase [Clostridium hathewayi DSM 13479] Length = 149 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 7/154 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + D ILR+ + +++++ I ++++M + +++T G +AA Q+G+L RLV Sbjct: 1 MAVLNMRYDGDEILRKKCKEVKEVDDRIREILNDMTDTLHATPNGAAIAANQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ M +NP I+ + + EGCLS P+ R + V+ +D N Sbjct: 61 VIDMG-----TGLMKLVNPVIVEQTGEQDCI-EGCLSFPEKYGRTIRPQTVIVKALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + +A C HELDHL+G+ F+D ++ Sbjct: 115 EVVTLTGIDEMAKCFCHELDHLDGVCFVDKVTEW 148 >gi|117165081|emb|CAJ88634.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC 23877] Length = 214 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 18/162 (11%) Query: 5 PLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+V DP+LRR + P + + ++ + M + G+GLAA Q+GV R+ Sbjct: 25 PIVAAGDPVLRRPAEP---FDGQLEPALLARFVEALRLTMRAAPGVGLAAPQVGVGLRIA 81 Query: 60 VIDLQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 VI+ + + V +NP + + EGCLS+P ++A V R A Sbjct: 82 VIEDPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGPGRAAFYEGCLSVPGWQAVVARHAE 141 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + D + + +G A +QHE DHL+G+L++D Sbjct: 142 VRLVARDEHGRAVDEVFEGWPARIVQHETDHLDGVLYLDRAE 183 >gi|262368804|ref|ZP_06062133.1| peptide deformylase [Acinetobacter johnsonii SH046] gi|262316482|gb|EEY97520.1| peptide deformylase [Acinetobacter johnsonii SH046] Length = 161 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 8/158 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + ILR + + + NSD +M L M+ M G+G+AA Q+ + R+ Sbjct: 3 VILPVAQRGEDILRLKAARVADAEFNSDWLMQLASAMIATMLERSGVGIAAPQVYISKRV 62 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A + +V +NP+I+ FS ++ +EGCLS+P+ R V+R+ I V Sbjct: 63 IIVASRPNLRYPDAPEMDAVVMVNPEILEFSQATTLGEEGCLSVPNERGQVQRAQSIKVL 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y + +G A +QHE+DHLNGILF+D LS Sbjct: 123 YHTLTGEVMESTFEGFPARIVQHEIDHLNGILFVDRLS 160 >gi|239927233|ref|ZP_04684186.1| peptide deformylase [Streptomyces ghanaensis ATCC 14672] Length = 205 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 18/163 (11%) Query: 5 PLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+V DP+LRR + P + + ++ + M++ G+GLAA Q+GV R+ Sbjct: 16 PIVAAGDPVLRRGAEP---FDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIA 72 Query: 60 VID----LQDHAHRKNPMV------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 VI+ + + R V +NP + + EGCLS+P Y+A V R A Sbjct: 73 VIEDPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAE 132 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + D + + G A +QHE+DHL+G+L++D Sbjct: 133 VRLTGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLDRAEP 175 >gi|119383398|ref|YP_914454.1| peptide deformylase [Paracoccus denitrificans PD1222] gi|119373165|gb|ABL68758.1| Peptide deformylase [Paracoccus denitrificans PD1222] Length = 185 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 1/147 (0%) Query: 3 KKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P++I PDP LR + P+ ++ +I L ++L MY G GLAA QIG +R+ V+ Sbjct: 28 VRPILIHPDPALRVICEPVGRLGWDEIARLAADLLATMYDAGGRGLAAPQIGEGWRIFVM 87 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D P V ++P+I + +E CLSIP V R I++R D Sbjct: 88 DHGWKEGTPLPRVVMDPQIAPLGGEVGTMEEACLSIPGRPVSVTRPVTISMRCFDLTGTL 147 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 Q++ G+ A QHE DHL+G L +D Sbjct: 148 QLLTLTGIEARIAQHETDHLDGRLILD 174 >gi|255629341|gb|ACU15015.1| unknown [Glycine max] Length = 223 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V + +L + +E I + + +ID+M+ VM G+GLAA QIG+ R++V++ Sbjct: 37 IVKAGEAVLHSRAEEVEAIEIKSERVQKIIDDMVRVMRKAPGVGLAAPQIGIPLRIIVLE 96 Query: 63 LQDH-----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 + A + P +V +NPK+ + +++ EGCLS+P Y A V+R Sbjct: 97 DKIQYMAYYSNQELKAQDRTPFDLLVILNPKLKNTTTRTALFFEGCLSVPGYSAVVERYL 156 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + I A G A LQHE DHL+G L++D + Sbjct: 157 DVEVAGFDRYGEPIKINATGWQARILQHECDHLDGTLYVDKMVP 200 >gi|327441112|dbj|BAK17477.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris StLB046] Length = 163 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P IL + +R +E I+ +I+ L+D++ + M DG+G+AA QI V R+ + Sbjct: 1 MAIKEVVKNPANILSKKTREVEVIDENIIQLLDDLYDTMVENDGVGIAAPQINVDLRVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + + INP ++ + EGCLS PD VKR ++ + D + Sbjct: 61 VELGEDI-----LEMINPIVLETRGE-EEDVEGCLSFPDLFGMVKRPTYVKIEASDREGR 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+ A C+ HE+DHL+G+LF ++R+ Sbjct: 115 IYELEAEDFEARCILHEIDHLDGVLFDSKMTRV 147 >gi|120597766|ref|YP_962340.1| peptide deformylase [Shewanella sp. W3-18-1] gi|146294101|ref|YP_001184525.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|120557859|gb|ABM23786.1| peptide deformylase [Shewanella sp. W3-18-1] gi|145565791|gb|ABP76726.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|319427442|gb|ADV55516.1| peptide deformylase [Shewanella putrefaciens 200] Length = 181 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 5/153 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+ + + ILR+ + + + ++ + +L + M M + G+G+AA Q+ + ++ Sbjct: 12 APLPIAQYGEAILRQTAIEVRQFDAKLTHLAEQMSASMMAAKGVGIAAPQVHSPLAMFIM 71 Query: 62 DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + +A + P+V +NP+I+ SD+ + +EGCLS+P+ R + R I VRY + Sbjct: 72 ASRPNARYPDAPHMAPVVVVNPQILNVSDELNAGEEGCLSVPEQRFIIPRHDRIEVRYQN 131 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 132 LQGEWQQAVLSGFIARIFQHEFDHLQGITLLER 164 >gi|91205481|ref|YP_537836.1| polypeptide deformylase [Rickettsia bellii RML369-C] gi|91069025|gb|ABE04747.1| Polypeptide deformylase [Rickettsia bellii RML369-C] Length = 195 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 16/166 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ P+ +LR S P+ I+S + + + +MLE MY+ +GIG++A+Q+G R ++ Sbjct: 9 MPILKIIKTPNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALI 68 Query: 61 IDLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSI---PDYR---ADVKRSAFIT 111 +D+ + ++ P INP++ S++ + E CLSI DV+R I+ Sbjct: 69 VDIPKEENDQIKREPFFIINPEVNYLSEEKVILNEDCLSIRKEDGIAFIIGDVERPKNIS 128 Query: 112 VRYMDCNAQHQIIYADG-------LLATCLQHELDHLNGILFIDHL 150 + Y+D + + +G + CLQHELDHL+GILFID L Sbjct: 129 ISYIDLEGNSKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRL 174 >gi|193699878|ref|XP_001950597.1| PREDICTED: peptide deformylase, mitochondrial-like [Acyrthosiphon pisum] Length = 213 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 16/161 (9%) Query: 6 LVIFPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+LR + P+ EKI ++ NLI M +M ++ IGLAA Q+G+ +++ VI Sbjct: 27 VVQIGDPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIH 86 Query: 63 LQDHAH-------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 +H V+INP++ + + + E C S Y ADV R Sbjct: 87 FPRPSHYFSKEEILLKGMEHVENQVWINPELKVLNHEKVTFNESCASFKGYSADVPRYKR 146 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + +D N + + + A A +QHE+DHLNG+++ D + Sbjct: 147 VLLTGIDENGEKKTLDAKEWTARIVQHEMDHLNGVMYSDRM 187 >gi|325283926|ref|YP_004256467.1| Peptide deformylase [Deinococcus proteolyticus MRP] gi|324315735|gb|ADY26850.1| Peptide deformylase [Deinococcus proteolyticus MRP] Length = 220 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 24/173 (13%) Query: 3 KKPLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIG 53 P+ ++ DP+LRR +RP++ ++ + + D MLE M++ G+GLAA Q+G Sbjct: 7 IYPIRLYGDPVLRRKARPLQHTDTLQVPGFAPQTLREVADTMLETMFAARGVGLAAPQVG 66 Query: 54 VLYRLVV-----IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQ-EGCLSIPD 99 + R+ V + +++ ++ P+ V +NPK+ + + EGCLSIPD Sbjct: 67 LGVRMFVAVEYDDNEEENEGKETPLKSRVLREYVMLNPKLTVINKKKDKSETEGCLSIPD 126 Query: 100 YRAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R+ + V Y D Q Q + A+ LA QHE DHL+G LF+DHL Sbjct: 127 IYEEGVPRARAVRVDYTDLEGQAQTVEAEDYLARVFQHENDHLDGKLFLDHLP 179 >gi|162457307|ref|YP_001619674.1| peptide deformylase [Sorangium cellulosum 'So ce 56'] gi|161167889|emb|CAN99194.1| peptide deformylase [Sorangium cellulosum 'So ce 56'] Length = 191 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 8/160 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + +P+LR+ +R + + + + ID+++E M +G G+AA Q+ V R Sbjct: 1 MTLLKIAHIGNPVLRQRAREVTEEELSSPAMQAFIDDLVETMRDANGAGIAATQVHVPVR 60 Query: 58 LVVIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + +++QD+ V +NP I + + EGCLS+P+ R V R+ I + Sbjct: 61 IFAVEVQDNPRYPYKPNIPLTVVVNPVIEPLTQETFENYEGCLSVPNLRGVVDRTTEIRL 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + GL A QHE DH++G+LF+D + Sbjct: 121 TGLDREGRPIDRVVRGLSAGTFQHEKDHVDGVLFVDRVKD 160 >gi|170050375|ref|XP_001861255.1| peptide deformylase, mitochondrial [Culex quinquefasciatus] gi|167872016|gb|EDS35399.1| peptide deformylase, mitochondrial [Culex quinquefasciatus] Length = 236 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 25/170 (14%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ ++ + + ++ L+ M++VM +GLAA QIG+ R++V++ + Sbjct: 42 QVGDPVLRQKAQLVPPEAVTSPEVRFLVQAMIDVMRKYSCVGLAAPQIGISLRILVMEFK 101 Query: 65 DH----------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 D +V INP++ + + + E C S+ + A Sbjct: 102 DKLRDEYTSAEYKIKEMDTLPLTVGRPTFMVVLINPELKVTNYEKKSFTEACASVKGFSA 161 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +V R + + + +D N + + + G A QHE+DHL+G+++ D + R Sbjct: 162 EVPRYSEVLLSGLDENGKSKELTLKGWNARIAQHEMDHLDGVIYTDVMDR 211 >gi|270157701|ref|ZP_06186358.1| peptide deformylase [Legionella longbeachae D-4968] gi|269989726|gb|EEZ95980.1| peptide deformylase [Legionella longbeachae D-4968] Length = 172 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 8/150 (5%) Query: 11 DPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +PILR+V+ PI + + +L+ M+++M +G+AA QIGV R++V Sbjct: 9 NPILRQVAEPINASEFGTPWLKSLVQTMIDIMAEKAAVGVAAPQIGVSKRVIVFGTSYTK 68 Query: 68 HRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 R+ INP + S++ EGCL+ D +V R+ I D Sbjct: 69 RRQPEYPIPDTALINPTLKVLSEEIQTDYEGCLNCDDIMGEVPRAMEIEYSGFDIEGNPV 128 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152 A GL A LQHE+DHL+GILFID + Sbjct: 129 TKRARGLEARILQHEIDHLDGILFIDRIED 158 >gi|332654337|ref|ZP_08420081.1| peptide deformylase [Ruminococcaceae bacterium D16] gi|332517423|gb|EGJ47028.1| peptide deformylase [Ruminococcaceae bacterium D16] Length = 152 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 7/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + L DPILR+ + + K++ I L+D+ML+ ++ T +G LAA Q+GVL RLV Sbjct: 1 MATRFLRYDSDPILRKKCKAVLKVDDKIRQLLDDMLDTLHETENGAALAANQVGVLKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID D + +NPK+I+ S EGCLS P+ R +T++ ++ Sbjct: 61 VIDFNDTRLK-----LVNPKMISQSG-VQECVEGCLSFPNRFVKTIRPQKVTIQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + I+ + +A C HEL+HL+G++F+D Sbjct: 115 EEIIVDGEDEMAKCFCHELEHLDGMIFLDK 144 >gi|326783953|ref|YP_004324347.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7] gi|310003965|gb|ADO98360.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7] Length = 128 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 50/125 (40%), Positives = 78/125 (62%) Query: 30 NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV 89 L D M E M+++DGIGLAA Q+G+ R++V+D H K + +NPKI S++ + Sbjct: 3 ELYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVL 62 Query: 90 YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + EGCLS+PD +V R I V + + + +++ DGL A +QHE+DHL GILF+D+ Sbjct: 63 FDEGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDY 122 Query: 150 LSRLK 154 + + Sbjct: 123 FNDKE 127 >gi|284042341|ref|YP_003392681.1| peptide deformylase [Conexibacter woesei DSM 14684] gi|283946562|gb|ADB49306.1| peptide deformylase [Conexibacter woesei DSM 14684] Length = 190 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 88/156 (56%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + ++ DP+LR +RP+E+ + + +LI + V+ G GLAA Q+GVL R+VV + Sbjct: 22 EIRLWGDPVLRASARPVERFDDGLADLITRLRWVIDDATGAGLAAPQLGVLVRVVVYRVP 81 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D V +NP I+ S + + + EGCLS+P A V+R A + V D + + + I Sbjct: 82 DEERDGPARVLVNPAIVVRSAERTTFVEGCLSMPGIVAPVERCANVVVHACDEHGRAREI 141 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A G A+ LQHELDHL+G+L D L+ R + Sbjct: 142 AAAGDHASVLQHELDHLDGVLLPDRLTPEHRRSYVR 177 >gi|294632567|ref|ZP_06711127.1| peptide deformylase [Streptomyces sp. e14] gi|292835900|gb|EFF94249.1| peptide deformylase [Streptomyces sp. e14] Length = 215 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LRR + P + ++ ++ + + M + G+GLAAVQ+GV R+ VI+ Sbjct: 25 PIVSAGDPVLRRPAEPYDGQLAPELLARFVQALRVTMRTAPGVGLAAVQVGVGLRIAVIE 84 Query: 63 LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + V +NP + + EGCLS+P ++A V R A + + Sbjct: 85 DPAPVPEEVRVARERVPQPFRVLVNPSYEPVGARRAAFFEGCLSVPGWQAVVARHAEVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R D + + G A +QHE DHL+G+L++D Sbjct: 145 RARDEHGRAVDEVFTGWPARIVQHETDHLDGVLYVDRAEP 184 >gi|293343343|ref|XP_002725458.1| PREDICTED: peptide deformylase-like protein-like [Rattus norvegicus] gi|293355230|ref|XP_001073696.2| PREDICTED: peptide deformylase-like protein [Rattus norvegicus] Length = 231 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E ++ L++ +++VM +GL+A Q+GV +++V++ Sbjct: 57 QVGDPVLRTVAAPVEPKQLAGPELQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLEFP 116 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D V +NP + + EGC S+ + A V R + Sbjct: 117 DRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 176 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +D + + A G A +QHE+DHL+G LFID + Sbjct: 177 QISGLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKMD 217 >gi|297162485|gb|ADI12197.1| peptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 14/161 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V P+LRR + P E S + L+ M E M + G+GLAA QIG+ R+ VI+ Sbjct: 21 PIVAAGVPVLRRPALPYEGQLSAGQLDRLVRAMRETMQAAPGVGLAAPQIGIPLRIAVIE 80 Query: 63 LQ-------DHAHRKNPM---VFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFI 110 A + P+ V +NP D + + EGCLS+P ++A V R I Sbjct: 81 DPAEVSAEVREARGRVPLPFRVLVNPSYEPVGDPGRRAAFFEGCLSVPGWQAVVARPERI 140 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +R D + G A +QHE DHL+G L++D Sbjct: 141 RLRGQDERGRELDEEFAGWPARIVQHETDHLDGTLYLDRAE 181 >gi|29654308|ref|NP_820000.1| peptide deformylase [Coxiella burnetii RSA 493] gi|154707431|ref|YP_001424426.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|161830427|ref|YP_001596722.1| peptide deformylase [Coxiella burnetii RSA 331] gi|39931093|sp|Q83CV9|DEF1_COXBU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|29541575|gb|AAO90514.1| peptide deformylase [Coxiella burnetii RSA 493] gi|154356717|gb|ABS78179.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|161762294|gb|ABX77936.1| peptide deformylase [Coxiella burnetii RSA 331] Length = 170 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 7/167 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVID 62 ++ +PDP L+ ++ +EK + + +ID M E Y+ + + + VID Sbjct: 4 ILQYPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVID 63 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQH 121 ++ P+ +N +II S + +EGC+S+ V R+A I VR D + Sbjct: 64 FSP--NKDQPLCLVNAEIIERSGE-HTEEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKP 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADG +A C+QHELDHLNGI+F+D LS LKR I K++ KL + Sbjct: 121 VEFEADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKLRRQ 167 >gi|299771142|ref|YP_003733168.1| peptide deformylase [Acinetobacter sp. DR1] gi|298701230|gb|ADI91795.1| peptide deformylase [Acinetobacter sp. DR1] Length = 160 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 87/157 (55%), Gaps = 8/157 (5%) Query: 2 VKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + IL+ ++ P+ E + + L M M +G+G+AA Q+ + R+ Sbjct: 3 VVLPVAKRGEDILKLIAAPVSANELNSDWLYQLAAAMQATMLERNGVGIAAPQVYISKRV 62 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A + +V +NP+I+ FS++ + +EGCLS+PD R V+R+ + V+ Sbjct: 63 IIVASRPNPRYPDAPEMDAVVMVNPEILEFSNETLLGEEGCLSVPDERGQVERAEMVKVK 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Y+ + G A +QHE+DHLNG+LF++ + Sbjct: 123 YLTLQGEAVETVFHGFPARIVQHEVDHLNGVLFVERI 159 >gi|299533459|ref|ZP_07046840.1| peptide deformylase [Comamonas testosteroni S44] gi|298718565|gb|EFI59541.1| peptide deformylase [Comamonas testosteroni S44] Length = 171 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 7/158 (4%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP L R+++P+ + ++D ++L+ L M++ +G GLAA QIG ++VV + Sbjct: 1 MGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEPN 60 Query: 68 HR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R V INP I ++ + EGCLS+P RA V R + D Sbjct: 61 PRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWNKVRYTGFDIYGDP 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 +G A +QHE DHL G L+ + R T Sbjct: 121 IDRTVEGFHARVVQHECDHLWGKLYPMRVRDFSRFGFT 158 >gi|302340678|ref|YP_003805884.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] gi|301637863|gb|ADK83290.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] Length = 174 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 7/152 (4%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVVI 61 + ++ F DP LR + + + + + ID + ++ G LAA QI +L ++VVI Sbjct: 7 VETIIRFGDPRLRVLCSEVAVFHKGLHDKIDCIARTLHQHGGGAALAAPQIALLKQIVVI 66 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + INP+I+ S S+ EGCLS+P + V+R I V Y D + Sbjct: 67 D-----YLGEYYELINPQIVEASGS-SIDYEGCLSLPGFWGQVERHQRIKVSYQDRFGEV 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A C QHE+DHL+G+LFID +S Sbjct: 121 YSVEAHDRMARCFQHEIDHLSGVLFIDRMSDE 152 >gi|269955472|ref|YP_003325261.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] gi|269304153|gb|ACZ29703.1| Peptide deformylase [Xylanimonas cellulosilytica DSM 15894] Length = 223 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 14/164 (8%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LR + P ++ + L + M M++ G+GLAA Q+G+ L V+ Sbjct: 29 VLPIVQSGDPVLRTPAAPYTGQLGDLLPRLAEVMRRTMHAAPGVGLAAPQVGIGLALAVV 88 Query: 62 DLQDHA---HRKNPM---VFINPKIITFSDD-------FSVYQEGCLSIPDYRADVKRSA 108 + + + + P+ + NP +++ + EGCLSI + A V R Sbjct: 89 EDRGNESDPRERTPLPFRLLANPAYEPVAEEGPSGTLRRVPFFEGCLSIDGWHALVARHH 148 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + D + G A +QHE DHL G L++DH Sbjct: 149 RVRLTGQDADGAPIDEVLTGWPARIIQHETDHLRGELYLDHAVP 192 >gi|194741016|ref|XP_001952985.1| GF17444 [Drosophila ananassae] gi|190626044|gb|EDV41568.1| GF17444 [Drosophila ananassae] Length = 238 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + P+ + ++ ++ +++ M+ V+ D +G+AA QIGV R++ ++ + Sbjct: 55 GDPVLRQKAAPVPQEHILSPEVEAIVEKMVRVLRKYDCVGIAAPQIGVSLRIIAMEFKGS 114 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ P VFINP + + + EGC+S+ + ADV+R +++ Sbjct: 115 IRKELPEAVYQARQMTELPLTVFINPVLTVTNYTKLKHPEGCMSVRGFSADVERFEGVSI 174 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + N + G A QHE+DHL+G L+ DH+ R Sbjct: 175 SGSNGNGVQNELELSGWNARIAQHEMDHLDGKLYTDHMDR 214 >gi|157827157|ref|YP_001496221.1| polypeptide deformylase [Rickettsia bellii OSU 85-389] gi|157802461|gb|ABV79184.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389] Length = 187 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 16/166 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ P+ +LR S P+ I+S + + + +MLE MY+ +GIG++A+Q+G R ++ Sbjct: 1 MPILKIIKTPNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALI 60 Query: 61 IDLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSI---PDYR---ADVKRSAFIT 111 +D+ + ++ P INP++ S++ + E C+SI DV+R I+ Sbjct: 61 VDIPKEENDQIKREPFFIINPEVNYLSEEKVILNEDCISIRKEDGIAFIIGDVERPKNIS 120 Query: 112 VRYMDCNAQHQIIYADG-------LLATCLQHELDHLNGILFIDHL 150 + Y+D + + +G + CLQHELDHL+GILFID L Sbjct: 121 ISYIDLEGNSKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRL 166 >gi|115757064|ref|XP_790987.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115961483|ref|XP_001180273.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 186 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 20/171 (11%) Query: 1 MVKKP---LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54 M P + DP+LR S P+ + + +LI M+ VM T G+GLAA QIGV Sbjct: 1 MATPPYNHVTQVGDPVLRGKSDPVHPQDIRTKEFQDLIQKMVGVMRKTGGVGLAAPQIGV 60 Query: 55 LYRLVVIDLQDH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 ++ V++ + VF+NP + SD+ V EGCLS+ + Sbjct: 61 AQQVFVMEFTEKHMKGFSEEIQKAREMEVVPLKVFVNPSLKILSDNQVVLTEGCLSLTGF 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A R+ + + ++ + G A LQHE DHL G L+ID + Sbjct: 121 TAATPRAHEVEITGLNEKGEPVTWRVCGYPARILQHEYDHLQGTLYIDRMD 171 >gi|240140764|ref|YP_002965244.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Methylobacterium extorquens AM1] gi|240010741|gb|ACS41967.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Methylobacterium extorquens AM1] Length = 176 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +PL+ +PD L R + P+ + + L ++L+ + + +GL A+ IG Sbjct: 1 MPVRPLIFYPDARLHRAAEPVSANSESLTGESWRALAADVLDTLGAVSAMGLTAIHIGRP 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R+VVI LQ V+++P + S + + + EG +S+P V+R A + VRY Sbjct: 61 ERVVVIRLQPDEPHA---VYVDPVVAWSSPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL Sbjct: 118 DLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167 >gi|212212575|ref|YP_002303511.1| peptide deformylase [Coxiella burnetii CbuG_Q212] gi|212010985|gb|ACJ18366.1| peptide deformylase [Coxiella burnetii CbuG_Q212] Length = 170 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 7/167 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVID 62 ++ +PDP L+ ++ +EK + + +ID M E Y+ + + + VID Sbjct: 4 ILQYPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVID 63 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQH 121 ++ P+ +N +II S + +EGC+S+ V R+A I VR D + Sbjct: 64 FSP--NKDQPLCLVNAEIIERSGE-HTEEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKP 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADG +A C+QHELDHLNGI+F+D LS LKR I K++ KL + Sbjct: 121 VEFEADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKLRRQ 167 >gi|218507890|ref|ZP_03505768.1| peptide deformylase [Rhizobium etli Brasil 5] Length = 155 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 3/155 (1%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 P P L+ V P+ ++ + L D++L M + G+G+ A IGV R++V++L Sbjct: 1 PHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMVLELDRADGV 60 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + +++NP I S + ++ EG +S+P D+ R I RY D + + A+ Sbjct: 61 R---LYVNPAITWRSQETMIHAEGSVSMPGATDDITRPRAIRFRYQDVDGRMHDEAAEDF 117 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 LAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 152 >gi|46446175|ref|YP_007540.1| putative peptide deformylase [Candidatus Protochlamydia amoebophila UWE25] gi|46399816|emb|CAF23265.1| putative Peptide deformylase [Candidatus Protochlamydia amoebophila UWE25] Length = 156 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 53/142 (37%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----DHAHRKNPMVFINP 78 I+ + LI +M+E M++ GIGLAA Q+ L V + VFINP Sbjct: 4 IDDALKQLIYDMVETMHTMKGIGLAAPQVHHSISLFVTCVPVKNKNGLWESGKDRVFINP 63 Query: 79 KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHEL 138 +I++ S++ + EGCLSIP+ +V R A ITV+ +D GL AT HE Sbjct: 64 QILSMSEETQTFSEGCLSIPNLHMNVTRPAKITVQAVDLEGNLFEEIFTGLQATNFMHEY 123 Query: 139 DHLNGILFIDHLSRLKRDMITK 160 DHLNGIL ID+ S +R + + Sbjct: 124 DHLNGILIIDYYSLEERKSLEQ 145 >gi|262373169|ref|ZP_06066448.1| polypeptide deformylase [Acinetobacter junii SH205] gi|262313194|gb|EEY94279.1| polypeptide deformylase [Acinetobacter junii SH205] Length = 161 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 8/158 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + IL+ + + + NS+ ++ L M M +GIG+AA Q+ + R+ Sbjct: 3 VILPVAQRGEEILKIKAALVSDAEFNSEWLLQLASAMHATMLERNGIGIAAPQVYISKRV 62 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A + +V +NP+I+ FS + +EGCLS+PD R V+R+ + VR Sbjct: 63 IIVASRPNPRYPDAPEMDAVVMVNPEILEFSQATCLGEEGCLSVPDERGQVQRAQSVKVR 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y + DG A +QHE+DHL+G+LF++ LS Sbjct: 123 YHTLQGEVIETTFDGFPARIVQHEVDHLDGVLFVERLS 160 >gi|225352153|ref|ZP_03743176.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157400|gb|EEG70739.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 149 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR PI++I + +L+ ++L+ + GL+A QIGV R ++ Sbjct: 2 LRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNINGKIGY---- 57 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 +NP + + EGCLS+P +R+ + VR +D + ++ G++ Sbjct: 58 -VLNPVLEETCGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLEGKTVVLEGRGIMGRM 115 Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LQHE DHLNG +++D L + +R + M + Sbjct: 116 LQHETDHLNGHVYLDRLEKEERREAMRYMRNHHK 149 >gi|195107440|ref|XP_001998320.1| GI23900 [Drosophila mojavensis] gi|193914914|gb|EDW13781.1| GI23900 [Drosophila mojavensis] Length = 234 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR + P+E ++S +I ++D M+ V+ D +G+AA QIGV R++ ++ + Sbjct: 51 GDPVLRDRAAEVPVECVDSKEIRAIVDRMVHVLRKYDCVGVAAPQIGVSLRIIAMEFRRG 110 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ P VFINP++ + + EGC+S+ + A+V+R + + Sbjct: 111 IKKELPEAMYRARQMSELPLTVFINPRLSVTNYTKHKHPEGCMSVRGFSAEVERYEAVKL 170 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + + G A QHE+DHL+G L+ DH+ R Sbjct: 171 SGLDREGEPLSLELSGWNARIAQHEMDHLDGKLYTDHMDR 210 >gi|116515231|ref|YP_802860.1| hypothetical protein BCc_313 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285373|sp|Q057D2|DEF_BUCCC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|58384664|gb|AAW72679.1| polypeptide deformylase [Buchnera aphidicola (Cinara cedri)] gi|116257085|gb|ABJ90767.1| polypeptide deformylase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 149 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 2/151 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR +S+PI+ IN +I +M + MY+ +GIGLAA QI +L +++V Sbjct: 1 MSIRKILQFPDYRLRLLSKPIKIINKKTKKIIYDMFDTMYANNGIGLAAPQINILKQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + +V INP I+ + + EGCLSIP A +KRS+ I ++ ++ + Sbjct: 61 I--SSLKPTMSELVLINPVILKKNKKYINTIEGCLSIPKKTAKIKRSSCIKIQAINTYGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A LL+ C+QHE+DHL G LFID+++ Sbjct: 119 SFTLTAKSLLSICIQHEIDHLIGKLFIDYIN 149 >gi|218532205|ref|YP_002423021.1| peptide deformylase [Methylobacterium chloromethanicum CM4] gi|254563274|ref|YP_003070369.1| peptide deformylase [Methylobacterium extorquens DM4] gi|218524508|gb|ACK85093.1| formylmethionine deformylase [Methylobacterium chloromethanicum CM4] gi|254270552|emb|CAX26555.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Methylobacterium extorquens DM4] Length = 176 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +PL+ +PD L R + P+ + L ++L+ + + +GL A+ IG Sbjct: 1 MPVRPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRP 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R+VVI LQ V+++P + S + + + EG +S+P V+R A + VRY Sbjct: 61 ERVVVIRLQPDEPHA---VYVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL Sbjct: 118 DLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167 >gi|171058566|ref|YP_001790915.1| peptide deformylase [Leptothrix cholodnii SP-6] gi|170776011|gb|ACB34150.1| peptide deformylase [Leptothrix cholodnii SP-6] Length = 178 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R+++P+ + + ++ L+ ++ + M + +G G+AA QIGV +V Sbjct: 1 MPVRTILKMGDPRLLRIAQPVRRFDTPELHQLVQDLRDTMAAANGAGIAAPQIGVDLAVV 60 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V +NP+I+ SDD EGCLS+P R V R I Sbjct: 61 IFGSAHNPRYPDAPPVPATVLVNPQIVALSDDEEDGWEGCLSVPGLRGVVPRCTRIRYSG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D Q ADG A +QHE DHL G L+ + R T+ + Sbjct: 121 FDPVGQLIEREADGFHARVVQHECDHLIGKLYPMRVRDFSRFGYTEVL 168 >gi|15615221|ref|NP_243524.1| peptide deformylase [Bacillus halodurans C-125] gi|17432952|sp|Q9K9I9|DEF_BACHD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|10175279|dbj|BAB06377.1| formylmethionine deformylase [Bacillus halodurans C-125] Length = 182 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 20/175 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K +V +P+LR V++P+ ++ + MLE + ++ G+GLA Sbjct: 3 TMKDIVREGNPVLREVAKPVPVPLSDEDKQTAKRMLEFLINSQNPEIAEKYSLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIP-DYRADVK 105 A QIG+ +++ + D ++ +V NPKII+ S + + EGCLS+ + + V Sbjct: 63 APQIGLSKQMIAVHTTDENEKEYSLVLFNPKIISESVEMTHLEGGEGCLSVDREVQGIVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRD 156 R A ITV+ ++ N + + G A QHE+DHLNGI+F D + KR+ Sbjct: 123 RHARITVKAINENNEEVRLKLKGFPAIVFQHEIDHLNGIMFYDRIEGWVDPYKRE 177 >gi|251771507|gb|EES52084.1| Polypeptide deformylase [Leptospirillum ferrodiazotrophum] Length = 175 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV D +LR S P++ ++ ++ ++ + + + G+ +AA QIGV RL V Sbjct: 1 MSVRPLVSHRDTVLRIASEPVDPCAPEVRQVVQDLFDTLATQKGVAMAAPQIGVAMRLFV 60 Query: 61 IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 DL+ + P + INP I V EGCLS P ++R + V Sbjct: 61 FDLKRPREKGGPPTRGLLINPTIERRFGSIPVI-EGCLSFPGLDLSIRRPEGVVVSGYGL 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + ++ GL A ++HE DHL G L D + L Sbjct: 120 DGKKVVLEGGGLFARMVEHETDHLEGRLLPDRQNGL 155 >gi|330952315|gb|EGH52575.1| peptide deformylase [Pseudomonas syringae Cit 7] Length = 119 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 56/119 (47%), Positives = 78/119 (65%), Gaps = 2/119 (1%) Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 Q+ V R+VV+DL + R P VFINP+I +D+ YQEGCLS+P + +V R Sbjct: 1 TQVNVHKRVVVMDLSE--DRSEPRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQK 58 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + V+ +D + + + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 59 VRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 117 >gi|124359186|gb|ABD28402.2| Formylmethionine deformylase [Medicago truncatula] Length = 266 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 +V DP+L +R ++ +INSD I +ID M+ VM + GI L+A +IG+ R++V+ Sbjct: 67 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 126 Query: 62 ----DLQDHAHRKNP---------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 +L ++ N +V +NPK+ S+ ++ EGCLS+ ++A V+R Sbjct: 127 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 186 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + I A G A LQHE DHL+G L++D + Sbjct: 187 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVP 230 >gi|226952063|ref|ZP_03822527.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244] gi|226837220|gb|EEH69603.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244] Length = 163 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 8/158 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + IL + + + NS+ ++ L M M +G+G+AA Q+ + R+ Sbjct: 5 VVLPVAQRGEEILELKAAFVADGEFNSEWLLQLASAMHATMLERNGVGIAAPQVYISKRV 64 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A + +V +NP+I+ FS + +EGCLS+PD R V+R+ I VR Sbjct: 65 IIVASRPNPRYPDAPEMDAVVMVNPEILEFSQTTCLGEEGCLSVPDQRGFVERAQTIKVR 124 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y + +G A +QHE+DHL+G+LF++ +S Sbjct: 125 YYTLQGEVVETTFEGFPARIVQHEVDHLDGVLFVERMS 162 >gi|117919351|ref|YP_868543.1| peptide deformylase [Shewanella sp. ANA-3] gi|117611683|gb|ABK47137.1| peptide deformylase [Shewanella sp. ANA-3] Length = 176 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 5/162 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL++ + + + + +L M+ M G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILKQQADEVRDFDEKLSHLASQMVASMVEAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P+V +NP+I++ S + +EGCLS+P R + R I VRY D Sbjct: 75 PNERYPDAPLMDPVVVVNPQILSASAELVSGEEGCLSVPGQRFSIWRHQTIVVRYQDLAG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 Q G +A QHE DHL GI ++ ++ ++ ++ Sbjct: 135 HWQQTELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMARR 176 >gi|113971372|ref|YP_735165.1| peptide deformylase [Shewanella sp. MR-4] gi|113886056|gb|ABI40108.1| peptide deformylase [Shewanella sp. MR-4] Length = 181 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 5/150 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL+ + + ++ + L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIAVVGEAILKEQAVEVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P+V +NP+I++ S D +EGCLS+P R + R I VRY + Sbjct: 75 PNERYPDAPLMDPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLAG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 Q Q G +A QHE DHL GI ++ Sbjct: 135 QWQRSELTGFIARIFQHEFDHLQGITLLER 164 >gi|225706662|gb|ACO09177.1| Peptide deformylase, mitochondrial precursor [Osmerus mordax] Length = 248 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + P++ + S++ +I M++VM +GL+A Q+GV R++ ++ Sbjct: 74 QVGDPVLRSHAAPVDPSAVLGSEVQEVIGAMVKVMRKLQCVGLSAPQVGVPLRILALEFP 133 Query: 65 DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + VFINP++ ++QE C SI + A V R + Sbjct: 134 ESMLKDVSPAAREARGVAVVPLRVFINPQLRVLDRRTVLFQEACESISGFSARVPRYLEV 193 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V ++ A+ G A LQHE+DHL+G+L+IDH+ Sbjct: 194 EVSGLNEKAEPVTWEVSGWPARILQHEMDHLDGVLYIDHMD 234 >gi|262279936|ref|ZP_06057721.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202] gi|262260287|gb|EEY79020.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202] Length = 160 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 85/157 (54%), Gaps = 8/157 (5%) Query: 2 VKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ + IL+ ++ P+ E + + L M M +G+G+AA Q+ + R+ Sbjct: 3 VVLPVAKRGEDILKLIAAPVSSSELNSDWLYGLAAAMHATMLERNGVGIAAPQVYISKRV 62 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A + +V +NP+I+ FS + + +EGCLS+PD R V+R+ + V+ Sbjct: 63 IIVASRPNPRYPDAPEMDAVVMVNPEILEFSSETLLGEEGCLSVPDERGQVERAEMVKVK 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Y + G A +QHE+DHLNG+LF++ + Sbjct: 123 YSTLQGEFVETIFHGFPARIVQHEVDHLNGVLFVERI 159 >gi|264679313|ref|YP_003279220.1| peptide deformylase [Comamonas testosteroni CNB-2] gi|262209826|gb|ACY33924.1| peptide deformylase [Comamonas testosteroni CNB-2] Length = 173 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 7/153 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP L R+++P+ + ++D ++L+ L M++ +G GLAA QIG ++VV + Sbjct: 2 KMGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEP 61 Query: 67 AHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 R V INP I ++ + EGCLS+P RA V R + D Sbjct: 62 NPRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWNKVRYTGFDIYGD 121 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 DG A +QHE DHL G L+ + Sbjct: 122 PIDRTVDGFHARVVQHECDHLWGKLYPMRVRDF 154 >gi|162455696|ref|YP_001618063.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56'] gi|161166278|emb|CAN97583.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56'] Length = 203 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 25/175 (14%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P+V+ +LR+ + P+ + +L+ M+ VM G+GLAA QIGV + Sbjct: 1 MELPPIVLAGRAVLRKPAAPVPPEEIGTKRLKHLVSTMVSVMRKAPGVGLAAPQIGVDQQ 60 Query: 58 LVVI-DLQDHAHRKNP-------------MVFINPKII--------TFSDDFSVYQEGCL 95 ++V+ D ++ R P V INP + + + EGCL Sbjct: 61 VIVLEDSEELMSRLTPGQRAERGRVPFRLRVIINPTLRVLAPSLPDAAGAGRATFFEGCL 120 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 S+P Y A V+R + V +D + + A G A LQHE+DHL G L++D + Sbjct: 121 SVPGYMALVERDLSVEVSGVDEDGKEVRWEATGWPARILQHEVDHLRGTLYVDRM 175 >gi|157127011|ref|XP_001654759.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes aegypti] gi|108884464|gb|EAT48689.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes aegypti] Length = 243 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSR--PIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + P+E + ++ L+ +M+ VM D +GLAA QIG+ +++V++ +D Sbjct: 59 GDPVLRQTAAMVPVEAVTSPEVKYLVKHMVHVMRKYDCVGLAAPQIGISLKILVMEFEDR 118 Query: 67 AHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + V INP++ + + + E C S+ Y +V R A + + Sbjct: 119 LKKHYTNAEYKIKEMETLPLTVMINPEMKITNYEKISFPESCASVKGYSGEVARYAGVLL 178 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D N Q + + G A QHE+DHLNG+++ D + R Sbjct: 179 SGLDENGQSKEMELKGWNARIAQHEMDHLNGVVYTDVMKR 218 >gi|149919087|ref|ZP_01907571.1| putative polypeptide deformylase protein [Plesiocystis pacifica SIR-1] gi|149820017|gb|EDM79438.1| putative polypeptide deformylase protein [Plesiocystis pacifica SIR-1] Length = 192 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 9/161 (5%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + + P+LR+V+R + +I ID+++ M +G GLAA Q+ Sbjct: 1 MATIRAIARVGAPVLRQVAREVSPEELATPEIQGFIDDLVATMRHANGAGLAANQVFEPI 60 Query: 57 RLVVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 ++ +++Q + V +NPK+ DD EGCLS+PD R V+R A + Sbjct: 61 QICALEVQSNPRYPYKPNIPLTVLVNPKLTPLGDDSFANYEGCLSVPDLRGVVRRHARLR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ +D G+ A QHE+DHL G LF+D + Sbjct: 121 VQALDREGNSLDFETAGVTAGTYQHEVDHLRGKLFLDRVED 161 >gi|167957315|ref|ZP_02544389.1| peptide deformylase [candidate division TM7 single-cell isolate TM7c] Length = 211 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIG 53 M K+ ++ P+ LR+ S+ I I ++ LI +M E LAAVQ+ Sbjct: 21 MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 80 Query: 54 VLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L R+V++ + D+ + INP+II + + + EGCLS+ V R + V Sbjct: 81 KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 140 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + ++ + + I A+G LA LQHE+DH NGI+FIDH+ + K+D K Sbjct: 141 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 187 >gi|294651129|ref|ZP_06728464.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] gi|292822961|gb|EFF81829.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] Length = 163 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 8/158 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 V P+ IL + + + NS+ ++ L M M +G+G+AA Q+ + R+ Sbjct: 5 VVLPVAQRGKEILELKAAFVADGEFNSEWLLQLASAMHATMLERNGVGIAAPQVYISKRV 64 Query: 59 VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + A + +V +NP+I+ FS + +EGCLS+PD R V+R+ I VR Sbjct: 65 IIVASRPNPRYPDAPEMDAVVMVNPEILEFSQQTCLGEEGCLSVPDQRGVVERAQTIKVR 124 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y + +G A +QHE+DHL+G+LF++ +S Sbjct: 125 YYTLQGEVVETTFEGFPARIVQHEVDHLDGVLFVERMS 162 >gi|260905538|ref|ZP_05913860.1| peptide deformylase [Brevibacterium linens BL2] Length = 221 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DPILR+ +RP + ++++ L + M M + G+GLA Q+G+ + V + Sbjct: 27 PIVEAGDPILRQTTRPFDGQVDDAELAQLAEVMRATMLAAPGVGLAGPQVGIGLSMFVAE 86 Query: 63 LQDHAHRK----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + V +N + + + + EGCLSIP Y+A V R I + Sbjct: 87 DPGSLDPETAEVRQRSPMPLRVVLNAEYTPATSENVAFFEGCLSIPGYQAVVARPRSIEL 146 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +D N G A + HE DHL+GI+++D Sbjct: 147 TGVDLNGTPIAEVVAGWSARIVAHETDHLDGIMYLDKAE 185 >gi|160876705|ref|YP_001556021.1| peptide deformylase [Shewanella baltica OS195] gi|160862227|gb|ABX50761.1| peptide deformylase [Shewanella baltica OS195] gi|315268905|gb|ADT95758.1| peptide deformylase [Shewanella baltica OS678] Length = 185 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P+V +NP+II S + +EGCLS+P R ++ R I VRY + Sbjct: 75 PNERYPDAPNMAPVVVVNPQIIHASSELVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLER 164 >gi|224011581|ref|XP_002295565.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209583596|gb|ACI64282.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 192 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 5/166 (3%) Query: 6 LVIFPDPILRRV-SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + +P P LRRV + PI + + ML +MY + G+GLAA QIG+ + V + Sbjct: 15 ITEYPRPALRRVPNTPISQFDDAFQTKAKEMLMIMYESKGVGLAAPQIGLNENVFVYNPS 74 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI--PDYRADVKRSAFITVRYMDCNAQHQ 122 D + + + NPKI +S++ V QEGCLS+ + V RSA+I Y + Q Sbjct: 75 DSKNME--RIVCNPKITKYSEEVIVEQEGCLSMRSDEVAGQVARSAWIECEYENEEGQKV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A QHE DHL GIL D R+ + ++ L+ L Sbjct: 133 RRRLKDFEARVFQHEYDHLKGILCYDRFPPEDREAAQENINTLLGL 178 >gi|168014244|ref|XP_001759662.1| predicted protein [Physcomitrella patens subsp. patens] gi|162689201|gb|EDQ75574.1| predicted protein [Physcomitrella patens subsp. patens] Length = 194 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 18/163 (11%) Query: 8 IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DL 63 DP+L + + + + + I I++M++VM + G+GLAA QIG+ +++V+ D Sbjct: 3 QAGDPVLHEPAEEVMREDIGSARIEKAINDMVDVMRAGPGVGLAAPQIGIPLQIIVLEDT 62 Query: 64 QDHAHRKNP-------------MVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAF 109 ++ +P +V INPK+ S + + EGCLS+ +RA V+R Sbjct: 63 KELMSYTSPEECEAQQRTPFDLLVIINPKLEMKASGGTAFFFEGCLSVAGHRALVERHLE 122 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V + + Q A G A LQHE DHL G+L++D + + Sbjct: 123 VEVTGLGRDGQPLHFTAKGWKARILQHEYDHLQGLLYVDRMVK 165 >gi|124485039|ref|YP_001029655.1| peptide deformylase [Methanocorpusculum labreanum Z] gi|124362580|gb|ABN06388.1| peptide deformylase [Methanocorpusculum labreanum Z] Length = 157 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 6/163 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+L + ++ I + ++ NM + M IGL+A QIGV RL ++ Sbjct: 1 MICEIRKYGDPVLFLHAETVQNIGPLELEILTNMWDTMIHNKCIGLSAPQIGVSKRLFIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + NP+++ EG IP + V+R IT RY+D + + Sbjct: 61 NAGGVTIKGA-----NPEVL-KEGALVEEMEGSPCIPGIQRPVRRPGKITCRYLDISGET 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G+ A HE DH GIL++DHL +++ MI K + K Sbjct: 115 IETELKGIAARAFLHEKDHHEGILYLDHLKPIQKRMILKSLEK 157 >gi|332669559|ref|YP_004452567.1| peptide deformylase [Cellulomonas fimi ATCC 484] gi|332338597|gb|AEE45180.1| Peptide deformylase [Cellulomonas fimi ATCC 484] Length = 321 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%) Query: 3 KKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 K P+V P+LR + P + + ++ +L+ M M++ G+GLAA QIG+ + V Sbjct: 30 KVPIVQAGHPVLRAQALPYDGQLADDELESLVHVMRATMHAAPGVGLAAPQIGLPVAVAV 89 Query: 61 IDLQDHA-------HRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 ++ + P+ V +NP+ D+ + EGCLS+ Y+A V R + Sbjct: 90 LEDSGPPDGDVAQVRERAPLEFRVLVNPRYAAVDDERRAFYEGCLSVVGYQAVVARPRRV 149 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + G A +QHE DHL G+L++D Sbjct: 150 HLVGADERGRPLDEVLTGWPARIVQHETDHLGGVLYLDRAE 190 >gi|223043772|ref|ZP_03613815.1| polypeptide deformylase [Staphylococcus capitis SK14] gi|222442869|gb|EEE48971.1| polypeptide deformylase [Staphylococcus capitis SK14] Length = 162 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+L++ S+ + + + + +L+ ++ + +Y + ++A QIGV R+ + Sbjct: 1 MTVKKLVKSTHPLLKKESKTVNQYDDQLKSLLKDLEDTLYEEEAAAISAPQIGVNQRVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP I ++SD+ EG +S+P+ +V RS I ++ D N Sbjct: 61 IDM----ELEGLLQLINPVIKSYSDEEITDLEGSVSLPNVFGEVTRSKMIVLQCNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DHLNGILF D +R+ Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTDKANRI 149 >gi|114778706|ref|ZP_01453518.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1] gi|114551068|gb|EAU53630.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1] Length = 169 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 90/159 (56%), Gaps = 4/159 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDL 63 ++ PD LR+V + SD+ + VM + G +G+AA QIG R++VID Sbjct: 11 DILKHPDERLRQVCPDVTDFGSDLEARFAQLDAVMRAAPGGVGIAAPQIGWQQRMIVIDC 70 Query: 64 QDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + N +++++ +I + ++ +EGCLS+PD+ A V+R+ + V Y D + Sbjct: 71 RESLRPCKNNGLLWMSNPVIESVEGKALGREGCLSVPDWVAMVERARSLQVSYDDVHGDR 130 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + G A +QHELDHL+GILFID + RD++ + Sbjct: 131 LSLESTGFEARVIQHELDHLDGILFIDRVVS-ARDLVRR 168 >gi|195499829|ref|XP_002097113.1| GE24678 [Drosophila yakuba] gi|194183214|gb|EDW96825.1| GE24678 [Drosophila yakuba] Length = 238 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + K + ++ +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 55 GDPVLRQQAAVVPKEHLDSPELKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGR 114 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ P VFINP + + + EGC+S+ Y A+V+R + + Sbjct: 115 IRKELPEAVYQTRQMSELPLTVFINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGVKL 174 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + G A QHE+DHL G L+ DH+ R Sbjct: 175 TGLDQQGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|237745527|ref|ZP_04576007.1| peptide deformylase [Oxalobacter formigenes HOxBLS] gi|229376878|gb|EEO26969.1| peptide deformylase [Oxalobacter formigenes HOxBLS] Length = 174 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ L R S P+ + N ++ L+ +M E M + G GLAA QIGVL R+V Sbjct: 1 MTVRKILKMGHSRLLRESEPVREFNTPELDELVSDMFETMQAAQGAGLAAPQIGVLKRVV 60 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + ++ V INP I +D+ EGCLSIP R V R A I Sbjct: 61 IFGYDENNRYPEAPPVPETVLINPVIRPLTDEIDEGWEGCLSIPGMRGVVPRWARIHYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D + A+G A +QHE DHL+GIL+ + L Sbjct: 121 FDQFGKRISRDAEGFHARVVQHECDHLDGILYPMRMLDL 159 >gi|195157966|ref|XP_002019865.1| GL12632 [Drosophila persimilis] gi|194116456|gb|EDW38499.1| GL12632 [Drosophila persimilis] Length = 196 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 20/171 (11%) Query: 1 MVKKPLVIF---PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54 M P + F DP+LR+++ + +I ++D M++V+ D +G+AA Q+GV Sbjct: 1 MSVPPYLHFTQIGDPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGV 60 Query: 55 LYRLVVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDY 100 R++V++ ++ + VFINP++ S + + EGC+S+ Y Sbjct: 61 PLRIIVMEFREGKQEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGY 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A V+R + ++ + + +G A QHE+DHLNG +++D + Sbjct: 121 SAQVERYERVRIKGIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRMD 171 >gi|54294000|ref|YP_126415.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens] gi|53753832|emb|CAH15298.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens] gi|307609830|emb|CBW99347.1| hypothetical protein LPW_11251 [Legionella pneumophila 130b] Length = 172 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 10/151 (6%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DPILR+ + PI + +S + LI M +M +G+AA QIG+ R++V D+ Sbjct: 9 DPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFG-TDYT 67 Query: 68 HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R+ P INP + S + EGCL+ + +V R+ I D + Sbjct: 68 KRRKPEYPIPDTALINPSLRILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNR 127 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A GL A LQHE+DHL+G LF+D + Sbjct: 128 ITKKASGLEARILQHEIDHLDGFLFLDRVED 158 >gi|114046443|ref|YP_736993.1| peptide deformylase [Shewanella sp. MR-7] gi|113887885|gb|ABI41936.1| peptide deformylase [Shewanella sp. MR-7] Length = 181 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 5/150 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL+ + + ++ + L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIAVVGEAILKEQAIVVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + NP+V +NP+I++ S D +EGCLS+P R + R I VRY + Sbjct: 75 PNERYPDAPLMNPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLAG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 Q Q G +A QHE DHL GI ++ Sbjct: 135 QWQRSELTGFIARIFQHEFDHLQGITLLER 164 >gi|323486114|ref|ZP_08091445.1| polypeptide deformylase [Clostridium symbiosum WAL-14163] gi|323400681|gb|EGA93048.1| polypeptide deformylase [Clostridium symbiosum WAL-14163] Length = 150 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 7/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + D ILR+ + +++++ I ++D+ML+ + T +G LAA Q+G+L RLV Sbjct: 1 MAIRQMRYNDDEILRKKCKEVKEVDDKIRVMLDDMLDTLRHTENGAALAANQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VI + + +NPKII S EGCLS P + R +TV+ +D Sbjct: 61 VI-----EYCGELLKLVNPKIIGRSG-TQECIEGCLSFPGKFVNTIRPQKVTVQALDEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 Q I+ +G +A C HEL+HL+G +F+D Sbjct: 115 QEVILTGEGEMAKCYCHELEHLDGEIFLDK 144 >gi|125778496|ref|XP_001360006.1| GA16218 [Drosophila pseudoobscura pseudoobscura] gi|54639756|gb|EAL29158.1| GA16218 [Drosophila pseudoobscura pseudoobscura] Length = 196 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 20/171 (11%) Query: 1 MVKKPLVIF---PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54 M P + F DP+LR+++ + +I ++D M++V+ D +G+AA Q+GV Sbjct: 1 MSVPPYLHFTQIGDPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGV 60 Query: 55 LYRLVVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDY 100 R++V++ ++ + VFINP++ S + + EGC+S+ Y Sbjct: 61 PLRIIVMEFREGKQEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGY 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A V+R + ++ + + +G A QHE+DHLNG +++D + Sbjct: 121 SAQVERYDRVRIKGIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRMD 171 >gi|153001985|ref|YP_001367666.1| peptide deformylase [Shewanella baltica OS185] gi|151366603|gb|ABS09603.1| peptide deformylase [Shewanella baltica OS185] Length = 185 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHCPLALFIMASR 74 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 75 PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLER 164 >gi|284117858|ref|ZP_06386753.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3] gi|283829473|gb|EFC33840.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3] Length = 160 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 4/139 (2%) Query: 18 SRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + P++ + ID+M E M + +GIGLAA Q+ +L+V+ V Sbjct: 2 AEPVDPAIIPSRAYQQFIDDMFETMDAYEGIGLAAPQVSRSEQLIVMRCDGQDAIPE-TV 60 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 INP+I+ + + EGCLS+ R V R + I V+ +D + A GL C+ Sbjct: 61 LINPRIVFYGPAQAEMWEGCLSVDGLRGKVTRPSSIRVQALDREGRSVDFEASGLFGVCI 120 Query: 135 QHELDHLNGILFIDHLSRL 153 QHE+DHL G LF+D ++ L Sbjct: 121 QHEMDHLIGKLFLDRMTDL 139 >gi|304410515|ref|ZP_07392133.1| peptide deformylase [Shewanella baltica OS183] gi|307304608|ref|ZP_07584358.1| peptide deformylase [Shewanella baltica BA175] gi|304350999|gb|EFM15399.1| peptide deformylase [Shewanella baltica OS183] gi|306912010|gb|EFN42434.1| peptide deformylase [Shewanella baltica BA175] Length = 185 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 75 PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLER 164 >gi|323448077|gb|EGB03980.1| hypothetical protein AURANDRAFT_33186 [Aureococcus anophagefferens] Length = 225 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 2/144 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P P LR + + + + M ++MY+ G+GLAA Q+GV RL+V + Sbjct: 54 IVAYPHPALRARNGDLAPGDLAAAAPLAARMFDLMYAAGGVGLAAPQVGVNARLMVFNPS 113 Query: 65 -DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D A + + NP+I+ S + V EGCLS P V R A++ V +D + Sbjct: 114 GDAARTGDEVALANPRIVAASAELEVGDEGCLSFPGMGGPVARHAWVEVAGLDLEGRAIS 173 Query: 124 IYADGLLATCLQHELDHLNGILFI 147 G A QHE DHL+G++++ Sbjct: 174 RAYAGWDARVFQHEYDHLDGVVYV 197 >gi|52841298|ref|YP_095097.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148360273|ref|YP_001251480.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|296106683|ref|YP_003618383.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|52628409|gb|AAU27150.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148282046|gb|ABQ56134.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|295648584|gb|ADG24431.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] Length = 172 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 10/151 (6%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +PILR+ + PI + +S + LI M +M +G+AA QIG+ R++V D+ Sbjct: 9 NPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFG-TDYT 67 Query: 68 HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 R+ P INP + S + EGCL+ + +V R+ I D + Sbjct: 68 KRRKPEYPIPDTALINPSLKILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNR 127 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A GL A LQHE+DHL+G LF+D + Sbjct: 128 ITKKASGLEARILQHEIDHLDGFLFLDRVED 158 >gi|325955362|ref|YP_004239022.1| peptide deformylase [Weeksella virosa DSM 16922] gi|323437980|gb|ADX68444.1| Peptide deformylase [Weeksella virosa DSM 16922] Length = 223 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRK 70 ILR S ++ +S + L D ML + + G+G+AA QIG+ + +Q + Sbjct: 61 ILRTKSIDLDPTDSSVKKLADRMLATVLDEETRGVGIAAPQIGINRN--AVWIQRFDQKD 118 Query: 71 NPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 P FINPKI +S +EGCLSIPD +V RS I + + D + Q +G Sbjct: 119 QPFQFFINPKITWYSSLLQKGREGCLSIPDTIGNVVRSYAIRIEFYDLDGQFHDEVIEGF 178 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A QHE+DHLNG+LF D L ++ TK Sbjct: 179 TAVIAQHEVDHLNGVLFTDRLQEQEKTTYTK 209 >gi|169837129|ref|ZP_02870317.1| peptide deformylase [candidate division TM7 single-cell isolate TM7a] Length = 191 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIG 53 M K+ ++ P+ LR+ S+ I I ++ LI +M E LAAVQ+ Sbjct: 1 MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 60 Query: 54 VLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L R+V++ + D+ + INP+II + + + EGCLS+ V R + V Sbjct: 61 KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + ++ + + I A+G LA LQHE+DH NGI+FIDH+ + K+D K Sbjct: 121 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 167 >gi|317482560|ref|ZP_07941575.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|316915982|gb|EFV37389.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] Length = 217 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 10/157 (6%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAAPQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P V INP SD + + EGCLS Y+A KR IT + Sbjct: 90 DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + +H G A QHE DHL+G L+ID Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAE 186 >gi|302830440|ref|XP_002946786.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f. nagariensis] gi|300267830|gb|EFJ52012.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f. nagariensis] Length = 257 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 24/169 (14%) Query: 6 LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V P+LR+V+R + + + NL+ M VM + G+GLAA QIG +R++V++ Sbjct: 51 IVQAGTPVLRQVAREVPPELLGSEWLRNLVATMTSVMRAAPGVGLAAPQIGEPWRVIVLE 110 Query: 63 LQDHAHRK--------------------NPMVFINPK-IITFSDDFSVYQEGCLSIPDYR 101 ++ + P+V +NP+ + + + + EGCLS+ Y Sbjct: 111 DREEYIVRQAASGMYDDDTLAAMERRAFGPLVLVNPRGLRPVGHEGAAFFEGCLSVRGYV 170 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 A V R + + +D ++ A G +A LQHE DHL GIL++D + Sbjct: 171 AVVPRYRIVELEAVDPAGLPVVVRASGWMARILQHEFDHLQGILYVDRM 219 >gi|47221907|emb|CAF98919.1| unnamed protein product [Tetraodon nigroviridis] Length = 198 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + P++ +++ ++ +++VM D +GL+A QIGV R++ ++ Sbjct: 24 QVGDPVLRSRAAPVDPGAVGGAEVQKVVHTLVKVMRELDCVGLSAPQIGVPLRILALEYP 83 Query: 65 DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + +F+NP++ +++QE C SI + A V R + Sbjct: 84 EKMLEESSPASREARGLSAQPLRIFVNPQLRVLDGRTALFQEACESISGFSATVPRYLSV 143 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V ++ N + A G A LQHE+DHL+G+L+ID + Sbjct: 144 EVSGLNENGEEVRWQARGWPARILQHEMDHLDGVLYIDRMD 184 >gi|271967210|ref|YP_003341406.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270510385|gb|ACZ88663.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 159 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLV 59 M +P+ F DP+LR V+ P+ + ++ L+ ++ M + G A Q+GV R++ Sbjct: 1 MAVQPIRPFADPVLRTVAEPVTSFDRELRGLVKSLQATMRAGAGRAGLAAPQLGVSLRVL 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V +L A INP++ S+ V E CLS P ++RS +T R D Sbjct: 61 VYELDGRAG-----HLINPRLEP-SERKIVADEACLSAPGLWWPLERSYMVTARGRDMFG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + A G+LA LQHE DHL+G+LFID L +R+ + Sbjct: 115 KPVTVRALGMLARVLQHEADHLDGVLFIDRLPEDERERFLQ 155 >gi|325963300|ref|YP_004241206.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469387|gb|ADX73072.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] Length = 226 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+V P LR+ + + S + LI M EVM+ G+GLAA Q+G+ ++ V+ Sbjct: 30 PIVQAGHPALRQRAAAYDGQLSAVQLDGLISLMREVMHEAPGVGLAAPQLGIPLQIAVVE 89 Query: 62 ---DLQDHA---HRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 D+ A +++P+ F +NP+ D + + EGCLS+ +A V R + + Sbjct: 90 DQYDVDPEAAALRKRSPLEFLAIVNPRYTPLGTDMASFYEGCLSLNGLQAVVARPEKVLL 149 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + + +G A +QHE DHLNG+L++D Sbjct: 150 EFQAPDGSGVQREFEGWQARIVQHETDHLNGVLYVDR 186 >gi|126173131|ref|YP_001049280.1| peptide deformylase [Shewanella baltica OS155] gi|125996336|gb|ABN60411.1| peptide deformylase [Shewanella baltica OS155] Length = 185 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILGQTAITVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 75 PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLER 164 >gi|118465399|ref|YP_883852.1| peptide deformylase [Mycobacterium avium 104] gi|118166686|gb|ABK67583.1| polypeptide deformylase [Mycobacterium avium 104] Length = 177 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 7/132 (5%) Query: 26 SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKNPMVFINP----- 78 +D++ LI +M + M + G+GLAA QIGV R+ V D D + V +NP Sbjct: 11 ADLVKLIADMYDTMDAAHGVGLAANQIGVGLRVFVYDCADDRGLTERRRGVVVNPVLETS 70 Query: 79 KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHEL 138 +I D EGCLS+P R+++ V +D + I GL A LQHE Sbjct: 71 EIPETMPDPDTDDEGCLSVPGESFPTGRASWARVTGLDADGSPVSIEGHGLFARMLQHET 130 Query: 139 DHLNGILFIDHL 150 HL+G L++D L Sbjct: 131 GHLDGFLYLDRL 142 >gi|323456767|gb|EGB12633.1| hypothetical protein AURANDRAFT_14540 [Aureococcus anophagefferens] Length = 181 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 3/164 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 + +P P+LR I + D M+ +MY DG+GLAA Q+G+ R V + Sbjct: 15 ITEYPMPVLRGPCADIVDFDDDFKQTCKEMMSIMYQADGVGLAATQVGLWKRFFVYNPTG 74 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLS--IPDYRADVKRSAFITVRYMDCNAQHQ 122 D + + +NP+I + + + +EGCLS + ++RS I V Y+D + + Sbjct: 75 DRLMKPYERIVVNPRITKYGEATADEEEGCLSSRSENCAGVIRRSLDIWVEYVDERNKKR 134 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 G A QHE DH+ G+L ID LS R + ++ ++V Sbjct: 135 TKKLSGFEARVFQHEYDHIEGVLHIDRLSPEDRAKVEPELERMV 178 >gi|54297041|ref|YP_123410.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris] gi|53750826|emb|CAH12234.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris] Length = 172 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%) Query: 11 DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DPILR+ + PI + S + LI M +M +G+AA QIG+ R++V + Sbjct: 9 DPILRQTAEPIAESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFSTEYTK 68 Query: 68 HRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 RK INP + S + EGCL+ + +V R+ I D + Sbjct: 69 RRKPEYPIPDTALINPSLKILSKEIQNGYEGCLNCGEIMGEVPRAMEIEYSGFDIDGNKI 128 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152 A GL A LQHE+DHL+G LF+D + Sbjct: 129 TKTASGLEARILQHEIDHLDGFLFLDRVED 158 >gi|195444657|ref|XP_002069968.1| GK11287 [Drosophila willistoni] gi|194166053|gb|EDW80954.1| GK11287 [Drosophila willistoni] Length = 241 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + + +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 56 QVGDPVLRQQAALVPPEHLDSPEIKAIVEQMIKVLRKYNCVGIAAPQIGVSLRIIAMEFK 115 Query: 65 DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 ++ P V INP++ S + EGC+S+ Y +V+R + Sbjct: 116 KEIRKELPEFTYQARLMSELPLTVLINPELTVTSYVKLKHPEGCMSVRGYSGEVERYEAV 175 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + D I G A QHE+DHL+G L+ D + R Sbjct: 176 NLNGHDRLGVKTQISLTGWNARIAQHEMDHLDGKLYTDRMDR 217 >gi|217974557|ref|YP_002359308.1| peptide deformylase [Shewanella baltica OS223] gi|217499692|gb|ACK47885.1| peptide deformylase [Shewanella baltica OS223] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL R + + ++++ +L + M M + G+G+AA Q+ L ++ + Sbjct: 15 PIALVGEAILGRTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 75 PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLER 164 >gi|297583895|ref|YP_003699675.1| peptide deformylase [Bacillus selenitireducens MLS10] gi|297142352|gb|ADH99109.1| peptide deformylase [Bacillus selenitireducens MLS10] Length = 194 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR+ + + ++ + +++M++ + ++ G+GLAA Q Sbjct: 6 DIVREGHPALRKPAEEVPVPLSEEDRQTLEDMMQFLRNSQDPETAETYGLRPGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPD-YRADVKRSA 108 I V + V+ + M F+NPKII+ S + + EGCLS+ V R + Sbjct: 66 INVSKNMFVVRFAEEDEEPIEMTFVNPKIISHSAETTHLPDGEGCLSVDRSVEGTVPRYS 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V D N I G A QHE DHLNGI+F D + Sbjct: 126 RVKVEATDENGHSFTIRLRGFFAIVFQHEFDHLNGIMFYDRID 168 >gi|284991544|ref|YP_003410098.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] gi|284064789|gb|ADB75727.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] Length = 177 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ + DP+LR + P+ + ++ L+ ++ + M++ G GLAA QIGV R+ Sbjct: 1 MSVTPIRLLGDPVLRTPAAPVVDFDQELRRLVADLTDTMFAAGGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP++ ++ EGCLSIP Y D +R ++ D + + Sbjct: 61 WYVDGEVG-----HLVNPEVTPVGEETEEGPEGCLSIPGYTFDCRRHLYVAATGFDLHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + LLA +QHE+DHL+G+LF+D L Sbjct: 116 PVRVEGSHLLARAVQHEVDHLDGVLFVDRLD 146 >gi|30249715|ref|NP_841785.1| peptide deformylase [Nitrosomonas europaea ATCC 19718] gi|39931084|sp|Q82TW4|DEF1_NITEU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|30180752|emb|CAD85666.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718] Length = 176 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + KP++ DP L + +R +++ ++ L+ +M + M + +G GLAA QIGV ++V+ Sbjct: 1 MIKPVLKMGDPCLLQPARRVDQFGTPELEALLQDMQDTMAALNGAGLAAPQIGVSLQVVI 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ A V INP + ++ EGCLSIP R V R + + + Sbjct: 61 FGVEHSPRYPDAESVPFTVLINPVLTPLTEQMEEDWEGCLSIPGMRGLVPRYTRLRYQGV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D G A +QHE DHLNGIL+ ++ L++ Sbjct: 121 DAAGASIDRTVTGFHARVVQHECDHLNGILYPMRINDLRK 160 >gi|138894591|ref|YP_001125044.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2] gi|196247801|ref|ZP_03146503.1| peptide deformylase [Geobacillus sp. G11MC16] gi|134266104|gb|ABO66299.1| N-formyl-methionyl-aminoacyl-tRNA deformylase [Geobacillus thermodenitrificans NG80-2] gi|196212585|gb|EDY07342.1| peptide deformylase [Geobacillus sp. G11MC16] Length = 184 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ P LR+V+ P+ + + ++ ++L+ + + GIGLA Sbjct: 3 TMKDIIKEGHPTLRKVAEPVPLPASEEDKRILQSLLDYLKMSQDPEMAAKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QI V R++ + + D NPKI++ S + EGCLS+ D V Sbjct: 63 APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV + + + GL A QHE+DHLNGI+F DH++ Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHINP 169 >gi|254498920|ref|ZP_05111625.1| peptide deformylase [Legionella drancourtii LLAP12] gi|254351905|gb|EET10735.1| peptide deformylase [Legionella drancourtii LLAP12] Length = 178 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 8/168 (4%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V+ +P LR VS+PI+ D+ L + + +M +G+GLAA QIG+ R +V Sbjct: 7 DVVLLGNPTLRMVSKPIDDEEFGTLDLNQLSERLFHMMKIKNGLGLAAPQIGINKRAIVF 66 Query: 62 DLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + +H +K+ + NP + SD EGCLS+ D R V R I R D Sbjct: 67 GMDNHPVKKHLPPIPYTILFNPIFESTSDFIEEEYEGCLSVGDLRGKVPRHKNIIYRGYD 126 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A L A +QHE DHLNGI+F+D ++ + ++ K Sbjct: 127 VDGNLIEREASDLHARVVQHETDHLNGIIFLDKVTNHQSLGFHNELIK 174 >gi|297204169|ref|ZP_06921566.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] gi|197714146|gb|EDY58180.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] Length = 218 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 18/162 (11%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM-----NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+V DP+LR+ IE + + ++ + M++ G+GLAA Q+GV R+ Sbjct: 25 PIVAAGDPVLRQG---IEHYDGHLDGALLSRFVEALRVTMHAAPGVGLAAPQVGVPLRIA 81 Query: 60 VIDLQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 VI+ + + V +NP + + EGCLS+P ++A V R A Sbjct: 82 VIEDPAPVPEEIRLARGRVPQPFRVLVNPSYAPVGTPRAAFFEGCLSVPGWQAVVARPAE 141 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + D N + G A +QHE DHL+G+L++D Sbjct: 142 VRLTCEDENGRAVDEVFSGWPARIVQHETDHLDGVLYLDRAE 183 >gi|255003823|ref|NP_080789.2| peptide deformylase-like protein [Mus musculus] Length = 231 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E ++ L+ M++VM +GL+A Q+GV +++ ++ Sbjct: 57 QVGDPVLRVVAAPVEPEQLAGPELQRLVGRMVQVMRRRGCVGLSAPQLGVPLQVLALEFP 116 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D V +NP + + EGC S+ + A V R + Sbjct: 117 DKLLRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 176 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +D + + A G A +QHE+DHL G LFID + Sbjct: 177 QISGLDPKGEPVVWSASGWTARIIQHEMDHLQGCLFIDKMD 217 >gi|296453662|ref|YP_003660805.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301] gi|296183093|gb|ADG99974.1| Peptide deformylase [Bifidobacterium longum subsp. longum JDM301] Length = 217 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 10/159 (6%) Query: 3 KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V Sbjct: 28 ILPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INP SD + + EGCLS Y+A KR IT Sbjct: 88 VEDHVRDDEDDPREIAEFPFHVIINPSYRPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + +H G A QHE DHL+G L+ID Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAE 186 >gi|241562206|ref|XP_002401329.1| polypeptide deformylase, putative [Ixodes scapularis] gi|215499858|gb|EEC09352.1| polypeptide deformylase, putative [Ixodes scapularis] Length = 217 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + P++ + +I +I M +VM T +G++A QIG ++ +++ Sbjct: 35 QVGDPVLRVRAEPVDPQKITSPEIRKVIHTMRQVMRGTYSVGISAPQIGCPLQITMMEFS 94 Query: 65 DHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + R VFINP + ++ V+ EGC SI Y A+V R + Sbjct: 95 NSNIRMAKKEDMTARLYQAFPLKVFINPTMEVVNNQQLVFPEGCESIRGYSAEVPRYYEV 154 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ++ + +H A G A +QHE+DHL G L+ID ++ Sbjct: 155 KISGLNEHGEHHEWQARGWPARIIQHEIDHLEGCLYIDRMN 195 >gi|114330947|ref|YP_747169.1| peptide deformylase [Nitrosomonas eutropha C91] gi|114307961|gb|ABI59204.1| peptide deformylase [Nitrosomonas eutropha C91] Length = 176 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + KP++ DP L + ++ IE+ ++ + L+ +M + M + +G GLAA QIG+ ++V+ Sbjct: 1 MIKPVLKMGDPRLLQPAQRIEQFDTPVLKELLQDMQDTMAALNGAGLAAPQIGISLQVVI 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ + V INP + +++ EGCLSIP R V R + + + Sbjct: 61 FGIEHSPRYPDVESVPFTVLINPILTPLTEEQEEDWEGCLSIPGMRGLVPRYTHLRYQGV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A G A +QHE DHLNGIL+ ++ L++ Sbjct: 121 DETATPIDRTVAGFHARVVQHECDHLNGILYPMRINDLRK 160 >gi|213692889|ref|YP_002323475.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524350|gb|ACJ53097.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459064|dbj|BAJ69685.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 217 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 10/159 (6%) Query: 3 KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V Sbjct: 28 ILPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INP SD + + EGCLS Y+A KR IT Sbjct: 88 VEDHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + +H G A QHE DHL+G L+ID Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAE 186 >gi|295399645|ref|ZP_06809626.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] gi|294978048|gb|EFG53645.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] Length = 184 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ P LR+V+ P+ + + ++ ++L+ + + GIGLA Sbjct: 3 TMKDIIKEGHPTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QI V R++ + + D NPKI++ S + EGCLS+ + V Sbjct: 63 APQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV + + + GL A QHE+DHLNGI+F DH+ Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 169 >gi|187734744|ref|YP_001876856.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] gi|187424796|gb|ACD04075.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] Length = 226 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 17/177 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 V ++ + P+LR P+ IN DI++ +D+M E + + GIGLAA Q+G +LV I Sbjct: 13 VILDILQYGHPLLREECGPVVHINRDILSFLDDMQETL-AQGGIGLAAPQVGRPIQLVTI 71 Query: 62 DLQDHA---------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 ++ R P+ FINP + F Y+EGCLSI A+V R Sbjct: 72 NIPSTDATTTWLEVDGCPTTLSRIMPLNFINPILHPF-GKKVPYREGCLSITKVYANVMR 130 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + + + + +GLLA CLQHE+DHL+G LF D +S D + +++ Sbjct: 131 RSCVRAVLTMMDGRTVTVKCNGLLARCLQHEVDHLHGGLFTDLVSSGDHDKVIRRLR 187 >gi|195330061|ref|XP_002031727.1| GM26160 [Drosophila sechellia] gi|194120670|gb|EDW42713.1| GM26160 [Drosophila sechellia] Length = 238 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + K + +I +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 55 GDPVLRQQAALVPKEHMDSPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGR 114 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ P VFINP + + + EGC+S+ Y A+V+R + + Sbjct: 115 IRKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGVKL 174 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + G A QHE+DHL G L+ DH+ R Sbjct: 175 TGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|116670740|ref|YP_831673.1| peptide deformylase [Arthrobacter sp. FB24] gi|116610849|gb|ABK03573.1| Peptide deformylase [Arthrobacter sp. FB24] Length = 226 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 12/158 (7%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-D 62 +V P+LR+ + P E +++ LI M EVM+ G+GLAA Q+G+ +L V+ D Sbjct: 31 IVQAGHPVLRQQAAPYEGQLDGTELAALIALMREVMHDAPGVGLAAPQLGIPLQLAVLED 90 Query: 63 LQDHA------HRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D ++P+ F INP + + EGCLS+ +A V R + + Sbjct: 91 QYDVDAETAAVRHRSPLEFFAVINPSYSPLGTGTAAFYEGCLSLQGLQAVVSRHETVRLD 150 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + G A +QHE DHL GIL++D Sbjct: 151 FTDPGGTRRQQDFFGWQARIVQHEADHLQGILYVDKAE 188 >gi|312111833|ref|YP_003990149.1| peptide deformylase [Geobacillus sp. Y4.1MC1] gi|311216934|gb|ADP75538.1| peptide deformylase [Geobacillus sp. Y4.1MC1] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 18/170 (10%) Query: 1 MVK--KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45 M+ K ++ P LR+V+ P+ + + ++ ++L+ + + GI Sbjct: 1 MMITMKNIIKEGHPTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGI 60 Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRA 102 GLAA QI V R++ + + D NPKI++ S + EGCLS+ + Sbjct: 61 GLAAPQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPG 120 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A ITV + + + GL A QHE+DHLNGI+F DH+ Sbjct: 121 YVPRYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 170 >gi|328949669|ref|YP_004367004.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] gi|328449993|gb|AEB10894.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] Length = 178 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 16/177 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYS-----TDGIGLAAVQIGV 54 M + ++ +P+LR VS P+E ++ +++++ + + T G G+AA QIGV Sbjct: 1 MAVREVLQLGNPLLREVSEPVEDPTSPEVARIVEDLRDTLAHWRATTTYGRGIAAPQIGV 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 L R+V ++L + P INP I S + V + CLS V+R +TVRY Sbjct: 61 LKRIVFLNLPELG----PWPLINPTITAKSPETMVVWDACLSFLSIFMQVERHREVTVRY 116 Query: 115 MDCNAQHQIIY--ADGLLATCLQHELDHLNGILFIDHLSRLK----RDMITKKMSKL 165 D + L+ LQHE+DHL+GIL ID + +K R ++ Sbjct: 117 QDLRGTWHEVRAGEAHNLSELLQHEIDHLDGILAIDRVVDVKTIVTRQEFERRYRAH 173 >gi|239826455|ref|YP_002949079.1| peptide deformylase [Geobacillus sp. WCH70] gi|239806748|gb|ACS23813.1| peptide deformylase [Geobacillus sp. WCH70] Length = 184 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ P LR+V+ P+ + + ++ ++L+ + + GIGLA Sbjct: 3 TMKDIIKEGHPTLRKVAEPVSLPPSEEDKQVLQSLLDYVKMSQNPELAEKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QI V R++ + + D NPKI++ S + EGCLS+ + V Sbjct: 63 APQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV + + GL A QHE+DHLNGI+F DH+ Sbjct: 123 RYARITVTGTTLEGKEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 169 >gi|238061428|ref|ZP_04606137.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149] gi|237883239|gb|EEP72067.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149] Length = 186 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 6/153 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61 +P+V PDP+L R ++ + ++ L +++ M + G +GLAA Q+GV ++ + Sbjct: 22 VRPVVSAPDPVLSRPGPEVDPTSDEVARLAADLIATMRVSPGCVGLAAPQVGVSAQVFAV 81 Query: 62 DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DC 117 D+ H V N +++ S + +EGC+S+PD DVKR++ + V + Sbjct: 82 DVTGHPKAVTVHGTFVLCNARVVEGS-RWKSGREGCMSVPDLTGDVKRASRLVVEGLLPG 140 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + DG A LQHE+DH G+LF+D + Sbjct: 141 SGAPVRLVTDGFEARALQHEIDHCLGLLFLDRV 173 >gi|11641243|ref|NP_071736.1| peptide deformylase, mitochondrial precursor [Homo sapiens] gi|17433054|sp|Q9HBH1|DEFM_HUMAN RecName: Full=Peptide deformylase, mitochondrial; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|11320944|gb|AAG33968.1|AF239156_1 peptide deformylase-like protein [Homo sapiens] gi|13195254|gb|AAK15624.1|AF322879_1 polypeptide deformylase-like protein [Homo sapiens] gi|38230771|gb|AAR14341.1| peptide deformylase [synthetic construct] gi|119603671|gb|EAW83265.1| hCG2027080, isoform CRA_a [Homo sapiens] gi|119603674|gb|EAW83268.1| hCG2027080, isoform CRA_a [Homo sapiens] Length = 243 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L Sbjct: 69 QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 128 Query: 65 DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + R+ P VF+NP + + EGC S+ + A V R + Sbjct: 129 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +D N + + A G A +QHE+DHL G LFID + Sbjct: 189 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 229 >gi|221104975|ref|XP_002163732.1| PREDICTED: similar to peptide deformylase-like protein [Hydra magnipapillata] Length = 212 Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 21/166 (12%) Query: 6 LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + DP+LR+V++P+ + D L D ++ + +G G+AA QIGV +++ ++ Sbjct: 32 VRQIGDPVLRQVAKPVDLATIVTPDFKKLCDRLVSTLRRHNGCGIAAPQIGVPLQVIAVE 91 Query: 63 LQDHAHRK------------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 + + V INPKI +EGCLS+ YRA V Sbjct: 92 FTGYDLKVAMDKYGSKGVSKLQMSLFPLKVMINPKIKIIDPTMLALKEGCLSVKGYRAMV 151 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 R+ I V ++ + + + G + +QHE+DHL G LF+D + Sbjct: 152 PRAKEIEVEMLNVSGNTETFRSLGWTSRIIQHEVDHLQGNLFVDTM 197 >gi|23335362|ref|ZP_00120599.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|23465752|ref|NP_696355.1| peptide deformylase [Bifidobacterium longum NCC2705] gi|189439807|ref|YP_001954888.1| peptide deformylase [Bifidobacterium longum DJO10A] gi|227546365|ref|ZP_03976414.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622367|ref|ZP_04665398.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133213|ref|YP_004000552.1| def2 [Bifidobacterium longum subsp. longum BBMN68] gi|322688630|ref|YP_004208364.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] gi|39931158|sp|Q8G534|DEF1_BIFLO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|23326438|gb|AAN24991.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189428242|gb|ACD98390.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|227213346|gb|EEI81218.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514364|gb|EEQ54231.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517274|emb|CBK70890.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. longum F8] gi|311772414|gb|ADQ01902.1| Def2 [Bifidobacterium longum subsp. longum BBMN68] gi|320459966|dbj|BAJ70586.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] Length = 217 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 10/157 (6%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P V INP SD + + EGCLS Y+A KR IT + Sbjct: 90 DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + +H G A QHE DHL+G L+ID Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAE 186 >gi|194902253|ref|XP_001980656.1| GG17275 [Drosophila erecta] gi|190652359|gb|EDV49614.1| GG17275 [Drosophila erecta] Length = 196 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 17/159 (10%) Query: 10 PDPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + E I+S +I +ID M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 13 GDPVLRQRAEEVPPEDIDSMEINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 72 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + VFINP++ S + + EGC+S+ Y A V+R + + Sbjct: 73 KQEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKVRI 132 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R + + +G A QHE+DHLNGI+++D + Sbjct: 133 RGIGKLGTPSEMELEGWSARIAQHEVDHLNGIIYVDKMD 171 >gi|109899738|ref|YP_662993.1| peptide deformylase [Pseudoalteromonas atlantica T6c] gi|109702019|gb|ABG41939.1| peptide deformylase [Pseudoalteromonas atlantica T6c] Length = 188 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD---IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M+K + + ILR ++ + + + + +D +L M +G+G+AA Q+ Sbjct: 1 MMK--IAQVGEVILRTPAKSVSQTDIETGAFQEFVDALLATMQEANGVGIAAPQVFDERA 58 Query: 58 LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +++I + N P+V INPK+I S++ EGCLS+P R ++R+ ++ + Sbjct: 59 VMIIASRPSPRYPNAPDMEPLVLINPKVIQSSEETVKDWEGCLSVPGLRGFIRRATWVEI 118 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+ + DG +A HE DHL G ++DH+ Sbjct: 119 EYLQRDGTPATQRLDGFVARIFLHEFDHLIGKTWLDHVE 157 >gi|253731832|ref|ZP_04865997.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724431|gb|EES93160.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|329728826|gb|EGG65247.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193] Length = 162 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ ++K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVKKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153 >gi|169837246|ref|ZP_02870434.1| peptide deformylase [candidate division TM7 single-cell isolate TM7a] Length = 238 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIGVLYRL 58 + P+ LR+ S+ I I ++ LI +M E LAAVQ+ L R+ Sbjct: 53 IGPHPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVDKLERI 112 Query: 59 VVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 V++ + D+ + INP+II + + + EGCLS+ V R + V+ ++ Sbjct: 113 VIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRVKALNE 172 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + I A+G LA LQHE+DH NGI+FIDH+ + K+D K Sbjct: 173 DGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 214 >gi|194741018|ref|XP_001952986.1| GF17443 [Drosophila ananassae] gi|190626045|gb|EDV41569.1| GF17443 [Drosophila ananassae] Length = 196 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 17/159 (10%) Query: 10 PDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + E+I+ +I ++D M++V+ D +G+AA QIG+ R++V++ ++ Sbjct: 13 GDPVLRQRAEEVPEERIDSPEIDQIVDRMVKVLRHYDCVGVAAPQIGIPLRIIVMEFREG 72 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + VF+NP++ S + + EGC+S+ Y A+V R + V Sbjct: 73 KREQYKPEIYEERKMSTLPLAVFVNPELEIVSGQINKHPEGCMSVRGYSAEVGRFDKVRV 132 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R + + +G A QHE DHLNG +++D + Sbjct: 133 RGVGKLGTPSEMELEGWNARIAQHETDHLNGCIYVDRMD 171 >gi|322690616|ref|YP_004220186.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320455472|dbj|BAJ66094.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] Length = 217 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 10/157 (6%) Query: 5 PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89 Query: 63 LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P V INP SD + + EGCLS Y+A KR IT + Sbjct: 90 DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + +H G A QHE DHL+G L+ID Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAE 186 >gi|66771605|gb|AAY55114.1| IP07194p [Drosophila melanogaster] Length = 206 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 17/159 (10%) Query: 10 PDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + + +I +ID M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 23 GDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 82 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + VFINP++ S + + EGC+S+ Y A+V+R + + Sbjct: 83 KQEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKVRI 142 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R + + +G A QHE+DHLNG +++D + Sbjct: 143 RGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMD 181 >gi|261885374|ref|ZP_06009413.1| peptide deformylase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 153 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 4/139 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PD L S + K ++++ +D+M + M + +GIGLAA+Q+G R+ +I Sbjct: 1 MILDVITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFII 60 Query: 62 DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L + + + + INPK I+ + VYQEGCLS+P Y DVKR+ I +++ D Sbjct: 61 NLINEDEVQDKNDLLEIINPKFISKDGEI-VYQEGCLSVPGYYEDVKRAKDIKIQFQDRF 119 Query: 119 AQHQIIYADGLLATCLQHE 137 + + ADGLL+ +QHE Sbjct: 120 GNLKELEADGLLSVAIQHE 138 >gi|195571951|ref|XP_002103964.1| GD20712 [Drosophila simulans] gi|194199891|gb|EDX13467.1| GD20712 [Drosophila simulans] Length = 196 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + + +I +ID M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 13 GDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 72 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + VFINP++ S + + EGC+S+ Y A V+R + + Sbjct: 73 KQEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKVRI 132 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R + + +G A QHE+DHLNG +++D + Sbjct: 133 RGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMDP 172 >gi|332227624|ref|XP_003262991.1| PREDICTED: peptide deformylase, mitochondrial-like [Nomascus leucogenys] Length = 240 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++V++L Sbjct: 69 QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLVLELT 128 Query: 65 DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + R+ P VF+NP + + EGC S+ + A V R + Sbjct: 129 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRLQAV 188 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +D N + + A G A +QHE+DHL G LFID + Sbjct: 189 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 229 >gi|24645726|ref|NP_731494.1| CG31278 [Drosophila melanogaster] gi|23170931|gb|AAF54540.2| CG31278 [Drosophila melanogaster] gi|54650588|gb|AAV36873.1| RE57173p [Drosophila melanogaster] gi|220952214|gb|ACL88650.1| CG31278-PA [synthetic construct] Length = 238 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + K + +I +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 55 GDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGR 114 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ P +FINP + + + EGC+S+ Y A+V+R + + Sbjct: 115 IRKELPEAVYQARQMSELPLTIFINPVLTVTNYAKLKHPEGCMSVRGYSAEVERFEGVKL 174 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + G A QHE+DHL G L+ DH+ R Sbjct: 175 TGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|195571953|ref|XP_002103965.1| GD20713 [Drosophila simulans] gi|194199892|gb|EDX13468.1| GD20713 [Drosophila simulans] Length = 239 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + K + +I +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 55 GDPVLRQQAALVPKEHMDSPEIGAIVEQMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGR 114 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ P VFINP + + + EGC+S+ Y A+V+R + + Sbjct: 115 IRKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGVKL 174 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + G A QHE+DHL G L+ DH+ R Sbjct: 175 TGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|76253777|ref|NP_001028902.1| hypothetical protein LOC619248 [Danio rerio] gi|66911060|gb|AAH97196.1| Zgc:114141 [Danio rerio] gi|148725884|emb|CAN87858.1| novel protein (zgc:114141) [Danio rerio] Length = 247 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + +E ++ +I +++VM + +GL+A QIGV R++ ++ Sbjct: 73 QVGDPVLRSHAAEVEPGAIQGPEVQKVIKTLVKVMRKLECVGLSAPQIGVPLRILALEYP 132 Query: 65 DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + M+FINP++ ++QE C SI Y A V R + Sbjct: 133 KKMLEESSTASVEARGLVAVPLMIFINPQLRVLDGRTVIFQEACESISGYSASVPRYVSV 192 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V ++ A+ A G A LQHE+DHLNG+L+IDH+ Sbjct: 193 EVSGLNEKAEEVSWKASGWPARILQHEMDHLNGVLYIDHMD 233 >gi|18043802|gb|AAH19912.1| Peptide deformylase (mitochondrial) [Homo sapiens] Length = 243 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L Sbjct: 69 QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 128 Query: 65 DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + R+ P VF+NP + + EGC S+ + A V R + Sbjct: 129 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +D N + + A G A +QHE+DHL G LFID + Sbjct: 189 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 229 >gi|24645728|ref|NP_731495.1| CG31373 [Drosophila melanogaster] gi|23170932|gb|AAN13481.1| CG31373 [Drosophila melanogaster] Length = 196 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 17/159 (10%) Query: 10 PDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + + +I +ID M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 13 GDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 72 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + VFINP++ S + + EGC+S+ Y A+V+R + + Sbjct: 73 KQEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKVRI 132 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R + + +G A QHE+DHLNG +++D + Sbjct: 133 RGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMD 171 >gi|195055502|ref|XP_001994656.1| GH17360 [Drosophila grimshawi] gi|193892419|gb|EDV91285.1| GH17360 [Drosophila grimshawi] Length = 203 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 17/159 (10%) Query: 10 PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR + + + +I ++++ M++V+ D +G+AA Q+GV R++V++ ++ Sbjct: 20 GDPVLRLCAEEVSAERIASQEIKDIVEQMVKVLRHYDCVGVAAPQLGVPMRIIVMEFREG 79 Query: 67 AHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + +FINP+I SD + EGC+S+ Y A V R + V Sbjct: 80 KREQFTPEVYEERKMSHLPLTIFINPQIEIISDKQHTHPEGCMSVRGYSAKVSRYDRVRV 139 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + G A QHE+DHLNGI++ID + Sbjct: 140 TGIGILGTPSELELVGWSARIAQHEMDHLNGIVYIDRMD 178 >gi|220912690|ref|YP_002487999.1| peptide deformylase [Arthrobacter chlorophenolicus A6] gi|219859568|gb|ACL39910.1| formylmethionine deformylase [Arthrobacter chlorophenolicus A6] Length = 226 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+V P LR+ + P + +I + + LI+ M +VM+ G+GLAA Q+G+ +L V+ Sbjct: 30 PIVQAGHPALRQKAAPFDGQITPEQLARLIELMRQVMHEAPGVGLAAPQLGIPLQLAVLE 89 Query: 62 DLQDHAHR------KNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 D D H + P+ F+ NP D + + EGCLS+ +A V R + + Sbjct: 90 DKYDVDHEAAALRNRAPLDFLAILNPSYTPAGPDRAAFYEGCLSLNGLQAVVSRPQAVLL 149 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 ++ + + G A +QHE DHLNGIL++D Sbjct: 150 DFVRPDGGAERRGFSGWQARIVQHETDHLNGILYVDR 186 >gi|167044672|gb|ABZ09343.1| putative Polypeptide deformylase [uncultured marine microorganism HF4000_APKG7H23] Length = 179 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 11/156 (7%) Query: 1 MVKKPLVIFPDPILRRV-----SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +PL PD +LR +R ++ + + LID M+E M+ +G+G+A+ Q+G Sbjct: 1 MAIRPLRYLPDQLLRTKTVSLRARDVQ--SPAVQRLIDEMIESMHHYNGVGIASNQVGSR 58 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 YR+ +I + P V +NP+I + V EGCLS+P Y+ + RS + V + Sbjct: 59 YRICIIQRPEEDAV--PFVLVNPRITRREGEREVT-EGCLSLPGYQGGIVRSERVWVTAL 115 Query: 116 DCNAQHQIIYAD-GLLATCLQHELDHLNGILFIDHL 150 D + + + GLLA L+HE DHL+G+ FIDHL Sbjct: 116 DRQGKQVQLRGETGLLAQALEHETDHLDGVAFIDHL 151 >gi|15924205|ref|NP_371739.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926798|ref|NP_374331.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315] gi|57651784|ref|YP_186090.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|87161304|ref|YP_493805.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194921|ref|YP_499721.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267706|ref|YP_001246649.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9] gi|150393764|ref|YP_001316439.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1] gi|151221337|ref|YP_001332159.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979536|ref|YP_001441795.1| hypothetical protein SAHV_1205 [Staphylococcus aureus subsp. aureus Mu3] gi|161509387|ref|YP_001575046.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142005|ref|ZP_03566498.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315573|ref|ZP_04838786.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006002|ref|ZP_05144603.2| polypeptide deformylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795729|ref|ZP_05644708.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|258415953|ref|ZP_05682223.1| peptide deformylase [Staphylococcus aureus A9763] gi|258419700|ref|ZP_05682667.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|258444552|ref|ZP_05692881.1| formylmethionine deformylase [Staphylococcus aureus A8115] gi|258447615|ref|ZP_05695759.1| polypeptide deformylase [Staphylococcus aureus A6300] gi|258449457|ref|ZP_05697560.1| polypeptide deformylase 1 [Staphylococcus aureus A6224] gi|258452512|ref|ZP_05700518.1| polypeptide deformylase 1 [Staphylococcus aureus A5948] gi|258454836|ref|ZP_05702800.1| polypeptide deformylase 1 [Staphylococcus aureus A5937] gi|262048116|ref|ZP_06021003.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30] gi|262051848|ref|ZP_06024064.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3] gi|269202830|ref|YP_003282099.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|282892701|ref|ZP_06300936.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|282919997|ref|ZP_06327726.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|282927555|ref|ZP_06335171.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|284024139|ref|ZP_06378537.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132] gi|294848208|ref|ZP_06788955.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|295407153|ref|ZP_06816954.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|296275236|ref|ZP_06857743.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1] gi|297245961|ref|ZP_06929820.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|304381222|ref|ZP_07363875.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54036958|sp|P63922|DEFL_STAAN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|54040934|sp|P63921|DEFL_STAAM RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81694664|sp|Q5HGL7|DEFL_STAAC RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|13701015|dbj|BAB42310.1| SA1058 [Staphylococcus aureus subsp. aureus N315] gi|14246985|dbj|BAB57377.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus Mu50] gi|57285970|gb|AAW38064.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|87127278|gb|ABD21792.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202479|gb|ABD30289.1| polypeptide deformylase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740775|gb|ABQ49073.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9] gi|149946216|gb|ABR52152.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus JH1] gi|150374137|dbj|BAF67397.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str. Newman] gi|156721671|dbj|BAF78088.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368196|gb|ABX29167.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789701|gb|EEV28041.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|257839289|gb|EEV63763.1| peptide deformylase [Staphylococcus aureus A9763] gi|257844285|gb|EEV68667.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|257850045|gb|EEV73998.1| formylmethionine deformylase [Staphylococcus aureus A8115] gi|257853806|gb|EEV76765.1| polypeptide deformylase [Staphylococcus aureus A6300] gi|257857445|gb|EEV80343.1| polypeptide deformylase 1 [Staphylococcus aureus A6224] gi|257859730|gb|EEV82572.1| polypeptide deformylase 1 [Staphylococcus aureus A5948] gi|257863219|gb|EEV85983.1| polypeptide deformylase 1 [Staphylococcus aureus A5937] gi|259160249|gb|EEW45277.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3] gi|259163682|gb|EEW48237.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30] gi|262075120|gb|ACY11093.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|269940707|emb|CBI49088.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus TW20] gi|282590558|gb|EFB95635.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|282594713|gb|EFB99697.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|282764698|gb|EFC04823.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|285816897|gb|ADC37384.1| Peptide deformylase [Staphylococcus aureus 04-02981] gi|294825008|gb|EFG41430.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|294968006|gb|EFG44034.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|297177125|gb|EFH36379.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|302751038|gb|ADL65215.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340205|gb|EFM06146.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829609|emb|CBX34451.1| polypeptide deformylase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131006|gb|EFT86990.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus CGS03] gi|315198452|gb|EFU28781.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus CGS01] gi|320140970|gb|EFW32817.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144315|gb|EFW36081.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313884|gb|AEB88297.1| Peptide deformylase-like protein [Staphylococcus aureus subsp. aureus T0131] gi|329724773|gb|EGG61278.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189] gi|329727640|gb|EGG64096.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172] Length = 162 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ ++ + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153 >gi|291456210|ref|ZP_06595600.1| peptide deformylase [Bifidobacterium breve DSM 20213] gi|291381487|gb|EFE89005.1| peptide deformylase [Bifidobacterium breve DSM 20213] Length = 217 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 10/159 (6%) Query: 3 KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ V+ + + LID M M G+GLAA QIG+ L V Sbjct: 28 ILPIVQAGEPVLRQQTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INPK + + + EGCLS Y+A KR IT Sbjct: 88 VEDHVRDDEDDPREIAEFPFHVIINPKYTPVGEKTTSFFEGCLSFDGYQAVRKRWLDITA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + +H G A QHE DHL+G L+ID Sbjct: 148 EWDDEDGKHHSEQLHGWPARIFQHETDHLSGELYIDKAE 186 >gi|152976388|ref|YP_001375905.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025140|gb|ABS22910.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98] Length = 208 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + E+ + +I+ M+E GIGLAA Q Sbjct: 30 DVIREGNPILRTVAEEVQLPASEEDTQTLKEMIEFVINSQNPEMVEKYNLRPGIGLAAPQ 89 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSA 108 IG+ R++ I + D NPKII+ S + + EGCLS+ + V R A Sbjct: 90 IGISKRMIAIHVTDTNETLYSYALFNPKIISHSVERTYLPAGEGCLSVDREVPGYVPRYA 149 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITV+ + + + GL A QHE+DHLNG++F DH++ Sbjct: 150 RITVKATTVDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 192 >gi|253733547|ref|ZP_04867712.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|258423742|ref|ZP_05686628.1| polypeptide deformylase [Staphylococcus aureus A9635] gi|253728601|gb|EES97330.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|257845974|gb|EEV70002.1| polypeptide deformylase [Staphylococcus aureus A9635] Length = 162 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVVKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153 >gi|194014264|ref|ZP_03052881.1| peptide deformylase [Bacillus pumilus ATCC 7061] gi|194013290|gb|EDW22855.1| peptide deformylase [Bacillus pumilus ATCC 7061] Length = 185 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 + +V P+LR+ + +E + + +M+E + ++ G+GLA Sbjct: 3 TMEDIVRDGHPVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDADMAEKYGLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105 A QI V R++ + +D + NP+I++ S + EGCLS+ + V Sbjct: 63 APQINVSKRMIAVHCEDEDGVEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGFVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R I V+ + I G A QHE+DHLNGI+F DH+ + Sbjct: 123 RYQKIRVKGTTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169 >gi|24372647|ref|NP_716689.1| polypeptide deformylase [Shewanella oneidensis MR-1] gi|32363157|sp|Q8EHZ2|DEF2_SHEON RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|24346687|gb|AAN54134.1|AE015550_9 polypeptide deformylase [Shewanella oneidensis MR-1] Length = 181 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 5/162 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+ + + IL++ + + + + L M M G+G+AA Q+ L ++ + Sbjct: 15 PIAVVGEAILKQQAIEVRDFDDTLSQLASQMAASMVEAKGVGIAAPQVHSPLALFIMASR 74 Query: 65 DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P+V +NP+I+ S +EGCLS+P R + R I VRY + Sbjct: 75 PNERYPDAPLMEPLVVVNPQIVLRSLQLEKGEEGCLSVPGQRFTIWRPQTIVVRYQNLAG 134 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 Q Q G +A QHE DHL GI ++ ++ ++ ++ Sbjct: 135 QWQHSELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMAQE 176 >gi|6225247|sp|O31410|DEF2_BACST RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|22219287|pdb|1LQY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Peptide Deformylase Complexed With Antibiotic Actinonin gi|2266414|emb|CAA71581.1| N-formylmethionylaminoacyl-tRNA deformylase [Geobacillus stearothermophilus] Length = 184 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ P LR+V+ P+ + + ++ ++L+ + + GIGLA Sbjct: 3 TMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QI V R++ + + D NPKI++ S + EGCLS+ D V Sbjct: 63 APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVL 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV + + + GL A QHE+DHLNGI+F D ++ Sbjct: 123 RYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINP 169 >gi|321315214|ref|YP_004207501.1| peptide deformylase [Bacillus subtilis BSn5] gi|320021488|gb|ADV96474.1| peptide deformylase [Bacillus subtilis BSn5] Length = 184 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 + +V P LR + P+E + +M+E + ++ G+GLA Sbjct: 3 TMENIVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105 A QI + R++ + +D + + NPKI++ S + + EGCLS+ + V Sbjct: 63 APQINIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R + I V+ ++ I G A QHE+DHLNG++F DH+ + Sbjct: 123 RYSRIRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|157692133|ref|YP_001486595.1| peptide deformylase [Bacillus pumilus SAFR-032] gi|157680891|gb|ABV62035.1| peptide deformylase [Bacillus pumilus SAFR-032] Length = 185 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 + +V P+LR+ + +E + + +M+E + ++ G+GLA Sbjct: 3 TMEDIVRDGHPVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDAEMAEKFGLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105 A QI + R++ + +D + NP+I++ S + EGCLS+ + V Sbjct: 63 APQINISKRMIAVHCEDEDGEEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGFVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R I V+ + I G A QHE+DHLNGI+F DH+ + Sbjct: 123 RYQKIRVKATTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169 >gi|42783070|ref|NP_980317.1| peptide deformylase [Bacillus cereus ATCC 10987] gi|206978074|ref|ZP_03238958.1| peptide deformylase [Bacillus cereus H3081.97] gi|217961461|ref|YP_002340029.1| peptide deformylase [Bacillus cereus AH187] gi|222097423|ref|YP_002531480.1| peptide deformylase [Bacillus cereus Q1] gi|229140704|ref|ZP_04269252.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST26] gi|229198091|ref|ZP_04324802.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1293] gi|42738998|gb|AAS42925.1| polypeptide deformylase [Bacillus cereus ATCC 10987] gi|206743701|gb|EDZ55124.1| peptide deformylase [Bacillus cereus H3081.97] gi|217068218|gb|ACJ82468.1| peptide deformylase [Bacillus cereus AH187] gi|221241481|gb|ACM14191.1| polypeptide deformylase [Bacillus cereus Q1] gi|228585389|gb|EEK43496.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1293] gi|228642776|gb|EEK99059.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST26] gi|324327875|gb|ADY23135.1| peptide deformylase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 184 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 A QIG+ R++ + + D NPKII+ S + + Q EGCLS+ + V Sbjct: 63 APQIGISKRMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|21282827|ref|NP_645915.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2] gi|49483378|ref|YP_040602.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252] gi|49486054|ref|YP_043275.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476] gi|257425268|ref|ZP_05601693.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427928|ref|ZP_05604326.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430561|ref|ZP_05606943.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433322|ref|ZP_05609680.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410] gi|257436164|ref|ZP_05612211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|282903768|ref|ZP_06311656.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|282905532|ref|ZP_06313387.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908508|ref|ZP_06316338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910787|ref|ZP_06318590.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913990|ref|ZP_06321777.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282918912|ref|ZP_06326647.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282924035|ref|ZP_06331711.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|283957956|ref|ZP_06375407.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501023|ref|ZP_06666874.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|293509982|ref|ZP_06668690.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|293526570|ref|ZP_06671255.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|295427700|ref|ZP_06820332.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297208141|ref|ZP_06924572.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297591341|ref|ZP_06949979.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|300912221|ref|ZP_07129664.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|38604914|sp|Q8NX19|DEFL_STAAW RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81649434|sp|Q6G9Z8|DEFL_STAAS RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81651281|sp|Q6GHM0|DEFL_STAAR RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|21204266|dbj|BAB94963.1| MW1098 [Staphylococcus aureus subsp. aureus MW2] gi|49241507|emb|CAG40193.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus MRSA252] gi|49244497|emb|CAG42926.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus MSSA476] gi|257271725|gb|EEV03863.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274769|gb|EEV06256.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278689|gb|EEV09308.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257281415|gb|EEV11552.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410] gi|257284446|gb|EEV14566.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|282314007|gb|EFB44399.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|282316722|gb|EFB47096.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282322058|gb|EFB52382.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282325392|gb|EFB55701.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327570|gb|EFB57853.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330824|gb|EFB60338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595386|gb|EFC00350.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|283470427|emb|CAQ49638.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ST398] gi|283790105|gb|EFC28922.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920642|gb|EFD97705.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|291096028|gb|EFE26289.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|291466926|gb|EFF09444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|295128058|gb|EFG57692.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887384|gb|EFH26286.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576227|gb|EFH94943.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|298694508|gb|ADI97730.1| probable peptide deformylase 1 [Staphylococcus aureus subsp. aureus ED133] gi|300886467|gb|EFK81669.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|312438408|gb|ADQ77479.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60] gi|315194101|gb|EFU24494.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus CGS00] Length = 162 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153 >gi|56419592|ref|YP_146910.1| peptide deformylase [Geobacillus kaustophilus HTA426] gi|261419255|ref|YP_003252937.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297530776|ref|YP_003672051.1| peptide deformylase [Geobacillus sp. C56-T3] gi|319766070|ref|YP_004131571.1| peptide deformylase [Geobacillus sp. Y412MC52] gi|56379434|dbj|BAD75342.1| peptide deformylase2 (PDF 2) N-formylmethionylaminoacyl-tRNA deformylase [Geobacillus kaustophilus HTA426] gi|261375712|gb|ACX78455.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297254028|gb|ADI27474.1| peptide deformylase [Geobacillus sp. C56-T3] gi|317110936|gb|ADU93428.1| peptide deformylase [Geobacillus sp. Y412MC52] Length = 184 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ P LR+++ P+ + + ++ ++L+ + + GIGLA Sbjct: 3 TMKDIIKEGHPTLRKIAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QI V R++ + + D NPKI++ S + EGCLS+ D V Sbjct: 63 APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV + + + GL A QHE+DHLNGI+F D ++ Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINP 169 >gi|314933389|ref|ZP_07840754.1| peptide deformylase [Staphylococcus caprae C87] gi|313653539|gb|EFS17296.1| peptide deformylase [Staphylococcus caprae C87] Length = 162 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL++ + + + + + +L+ ++ + +Y+ + ++A QIGV R+ + Sbjct: 1 MTVKKLVKSTHPILKKEIKTVNQYDDQLKSLLQDLEDTLYAEEAAAISAPQIGVNQRVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP I + SD+ EG +++P+ +V RS I V+ D N Sbjct: 61 IDM----ELEGLLQLINPVIKSHSDEEITDLEGSITLPNIFGEVTRSKMIVVQCNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DHLNGILF + +R+ Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTEKANRI 149 >gi|195330059|ref|XP_002031726.1| GM26159 [Drosophila sechellia] gi|194120669|gb|EDW42712.1| GM26159 [Drosophila sechellia] Length = 196 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 17/159 (10%) Query: 10 PDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + + +I +ID M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 13 GDPVLRQRAEEVPPEDVDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 72 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + VFINP + S + + EGC+S+ Y A V+R + + Sbjct: 73 KQEQFKPEIYEERKMSTLPLAVFINPVLEIISSQVNKHPEGCMSVRGYSAQVERYDKVRI 132 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R + + +G A QHE+DHLNG +++D + Sbjct: 133 RGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMD 171 >gi|229086420|ref|ZP_04218596.1| Peptide deformylase [Bacillus cereus Rock3-44] gi|228696936|gb|EEL49745.1| Peptide deformylase [Bacillus cereus Rock3-44] Length = 124 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 4/128 (3%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M E M DG+GLAA Q+GV ++ V+D+ D + INP I+ + V EGC Sbjct: 1 MHETMLVADGVGLAAPQVGVSLQVAVVDIGDDTGKIE---LINPVILEKRGE-QVGPEGC 56 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 LS P +V+R+ +I VR + + ++ AD LA +QHE+DHL+G+LF ++R Sbjct: 57 LSFPGLYGEVERAEYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLHGVLFTSKVTRYY 116 Query: 155 RDMITKKM 162 + ++M Sbjct: 117 EENELEEM 124 >gi|16078520|ref|NP_389339.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221309325|ref|ZP_03591172.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221313652|ref|ZP_03595457.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318574|ref|ZP_03599868.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322848|ref|ZP_03604142.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY] gi|6225248|sp|Q45495|DEF2_BACSU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|2633827|emb|CAB13329.1| formylmethionine deformylase A [Bacillus subtilis subsp. subtilis str. 168] gi|3282140|gb|AAC24930.1| unknown [Bacillus subtilis] gi|291483999|dbj|BAI85074.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195] Length = 184 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 + +V P LR + P+E + +M+E + ++ G+GLA Sbjct: 3 TMENIVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105 A QI + R++ + +D + + NPKI++ S + + EGCLS+ + V Sbjct: 63 APQINIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R A I V+ ++ I G A QHE+DHLNG++F DH+ + Sbjct: 123 RYARIRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|306822240|ref|ZP_07455622.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|309802249|ref|ZP_07696357.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] gi|304554622|gb|EFM42527.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|308221132|gb|EFO77436.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] Length = 242 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 71/158 (44%), Gaps = 11/158 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+V +P+LR+ + E S + LID M M G+GLAA QIG+ L V+ Sbjct: 54 PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVVE 113 Query: 62 ----DLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D D R+ V INP + EGCLS Y+A KR IT R Sbjct: 114 DHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDITAR 173 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + + G A QHE DHL+G L+ID Sbjct: 174 WQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDKAE 211 >gi|209736128|gb|ACI68933.1| Peptide deformylase, mitochondrial precursor [Salmo salar] Length = 249 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +P+LR + ++ + +I M++VM + +GL+A Q+GV R++ ++ Sbjct: 75 QVGEPVLRAQAAAVDPGAVQGPAVQEVIHTMVKVMRKFECVGLSAPQVGVPLRILALEFP 134 Query: 65 DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + +FINP++ ++QE C SI + A V R + Sbjct: 135 ERMLEDSLPAAREARGLTAVPLRIFINPQLRVLDGRTVLFQEACESISGFSATVPRYLSV 194 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V ++ A+ G A LQHE+DHL+G+L+ID + Sbjct: 195 EVSGLNEKAEPVTWQVSGWPARILQHEMDHLDGVLYIDRMD 235 >gi|288553244|ref|YP_003425179.1| peptide deformylase [Bacillus pseudofirmus OF4] gi|288544404|gb|ADC48287.1| peptide deformylase [Bacillus pseudofirmus OF4] Length = 179 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 17/177 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K +V P+LR V++ + + + + ML+ + ++ G+G+A Sbjct: 3 TMKDVVREGHPVLREVAKEVPLPASKEDKETLQRMLDFVINSQDPELSEKYQLRPGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 A QIG+ R+ + + D M NPKII+ S + + + EGCLS+ D V Sbjct: 63 APQIGIAKRMFAVHVADDNDNLYSMGLFNPKIISHSVEETHLESGEGCLSVDRDIPGIVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 R A ITV+ + + + + GL++ QHE+DHLNGI+F D + K D K++ Sbjct: 123 RYARITVKGTNLDGEEVTLRLRGLVSIVFQHEMDHLNGIMFYDRIEGFK-DPFKKEL 178 >gi|323692973|ref|ZP_08107194.1| peptide deformylase [Clostridium symbiosum WAL-14673] gi|323502974|gb|EGB18815.1| peptide deformylase [Clostridium symbiosum WAL-14673] Length = 150 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 7/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + D ILR+ + +++++ I ++D+ML+ + T +G LA Q+G+L RLV Sbjct: 1 MAIRQMRYNDDEILRKRCKEVKEVDDKIRVMLDDMLDTLRHTENGAALATNQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VI + + +NPKII S EGCLS P + R +TV+ +D Sbjct: 61 VI-----EYCGELLKLVNPKIIGRSG-TQECIEGCLSFPGKFVNTIRPQKVTVQALDEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 Q I+ +G +A C HEL+HL+G +F+D Sbjct: 115 QEVILTGEGEMAKCYCHELEHLDGEIFLDK 144 >gi|212716218|ref|ZP_03324346.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM 16992] gi|212660730|gb|EEB21305.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM 16992] Length = 218 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 11/158 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ + E S + LI+ M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAVVE 89 Query: 63 ---------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A V INP + + EGCLS Y+A KR IT R Sbjct: 90 DHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDITAR 149 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + + + G A QHE DHL+G L+ID Sbjct: 150 WQDEDGKQHEEHLHGWPARIFQHETDHLSGELYIDKAE 187 >gi|283456600|ref|YP_003361164.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1] gi|283103234|gb|ADB10340.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1] Length = 218 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 71/158 (44%), Gaps = 11/158 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+V +P+LR+ + E S + LID M M G+GLAA QIG+ L V+ Sbjct: 30 PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVVE 89 Query: 62 ----DLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D D R+ V INP + EGCLS Y+A KR IT R Sbjct: 90 DHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDITAR 149 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + + G A QHE DHL+G L+ID Sbjct: 150 WQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDKAE 187 >gi|195499832|ref|XP_002097114.1| GE24677 [Drosophila yakuba] gi|194183215|gb|EDW96826.1| GE24677 [Drosophila yakuba] Length = 196 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 17/159 (10%) Query: 10 PDPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + E I+S +I +I+ M++V+ D +G+AA Q+G+ R++V++ ++ Sbjct: 13 GDPVLRQRAEEVPPEDIDSMEINQIIEGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 72 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + VFINP++ S + + EGC+S+ + A+V+R + + Sbjct: 73 KQEQFKPEVYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGFSAEVERYDKVRI 132 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R + + +G A QHE+DHLNG +++D + Sbjct: 133 RGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMD 171 >gi|194902258|ref|XP_001980657.1| GG17276 [Drosophila erecta] gi|190652360|gb|EDV49615.1| GG17276 [Drosophila erecta] Length = 238 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DPILR+ + + K + +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 55 GDPILRQQAALVPKEHLDSPEIKAIVERMVKVLRKFECVGIAAPQIGVSLRIIAMEFKGR 114 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ P V INP + + + EGC+S+ Y A+V+R + + Sbjct: 115 VRKELPEVVYQARQMSELPLTVLINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGVKL 174 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + G A QHE+DHL G L+ DH+ R Sbjct: 175 TGLDQQGIQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|229104578|ref|ZP_04235242.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-28] gi|228678825|gb|EEL33038.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-28] Length = 184 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + EK + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIGV +++ + + D NPKII+ S + + EGCLS+ + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|296231447|ref|XP_002761154.1| PREDICTED: peptide deformylase, mitochondrial-like [Callithrix jacchus] Length = 243 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E+ ++ L+ +++VM +GL+A Q+GV +++ ++L Sbjct: 69 QVGDPVLRGVAAPVEREQLGGPELQRLVQRLVQVMRRQHCVGLSAPQLGVPRQVLALELT 128 Query: 65 DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 +K P VF+NP + + EGC S+ + A V R + Sbjct: 129 QALCQKTPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ++ N + + A G A +QHE+DHL G LFID + Sbjct: 189 EISGLNPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 229 >gi|291513863|emb|CBK63073.1| peptide deformylase [Alistipes shahii WAL 8301] Length = 202 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 10/153 (6%) Query: 6 LVIFPDP----ILRRVSRPIE---KINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLY 56 ++ +P +LR+ + P+ D L ML + G+G+AA Q+G+L Sbjct: 42 ILTVGNPADSLVLRQKAAPVTGRMLRTDDYAVLRRRMLATVQDPQNTGVGIAAPQVGILR 101 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 R++ + D ++NP+I+ S + + +EGCLSIP V R+ I +RY D Sbjct: 102 RMIAVQRFDKPGEPFEF-YLNPEIVESSAETAPGREGCLSIPGLAGTVVRAQRIVLRYPD 160 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + DG A QHE DHL+GIL+ D Sbjct: 161 ERFAEKTETIDGFTAVIFQHETDHLDGILYTDR 193 >gi|171742295|ref|ZP_02918102.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC 27678] gi|171277909|gb|EDT45570.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC 27678] Length = 242 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 71/158 (44%), Gaps = 11/158 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+V +P+LR+ + E S + LID M M G+GLAA QIG+ L V+ Sbjct: 54 PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVVE 113 Query: 62 ----DLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D D R+ V INP + EGCLS Y+A KR IT R Sbjct: 114 DHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDITAR 173 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + + G A QHE DHL+G L+ID Sbjct: 174 WQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDKAE 211 >gi|282916464|ref|ZP_06324226.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|283770276|ref|ZP_06343168.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] gi|282319904|gb|EFB50252.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|283460423|gb|EFC07513.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] Length = 162 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVARSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153 >gi|30022062|ref|NP_833693.1| peptide deformylase [Bacillus cereus ATCC 14579] gi|228941135|ref|ZP_04103690.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954250|ref|ZP_04116277.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228974067|ref|ZP_04134639.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229047661|ref|ZP_04193247.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH676] gi|229071475|ref|ZP_04204696.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus F65185] gi|229111445|ref|ZP_04240996.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-15] gi|229129252|ref|ZP_04258224.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-Cer4] gi|229152174|ref|ZP_04280367.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1550] gi|229192182|ref|ZP_04319149.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 10876] gi|296504467|ref|YP_003666167.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|39931053|sp|Q819K2|DEF2_BACCR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|29897619|gb|AAP10894.1| Polypeptide deformylase [Bacillus cereus ATCC 14579] gi|228591293|gb|EEK49145.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 10876] gi|228631136|gb|EEK87772.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1550] gi|228654178|gb|EEL10044.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-Cer4] gi|228671827|gb|EEL27120.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-15] gi|228711645|gb|EEL63599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus F65185] gi|228723682|gb|EEL75041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH676] gi|228785644|gb|EEM33651.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228805378|gb|EEM51970.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818529|gb|EEM64599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar berliner ATCC 10792] gi|296325519|gb|ADH08447.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|326941747|gb|AEA17643.1| peptide deformylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 184 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIGV +++ + + D NPKII+ S + + EGCLS+ + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|225865956|ref|YP_002751334.1| peptide deformylase [Bacillus cereus 03BB102] gi|229186214|ref|ZP_04313383.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC 6E1] gi|225789299|gb|ACO29516.1| peptide deformylase [Bacillus cereus 03BB102] gi|228597390|gb|EEK55041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC 6E1] Length = 184 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 A QIG+ +++ + + D NPKII+ S + + Q EGCLS+ + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|332305299|ref|YP_004433150.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172628|gb|AEE21882.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 183 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 6 LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + IL ++++P+ + + +D +L M + +G+G+AA Q+ +++I Sbjct: 3 IAQVGETILHQIAKPVAEEAIKSDAFQAFVDELLSTMQNANGVGIAAPQVFDERAVMIIA 62 Query: 63 LQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + + N P+V INPK+I + + EGCLS+P R ++R++++ + Y Sbjct: 63 SRPSSRYPNAPEMEPLVLINPKVIQSAQESVKDWEGCLSVPGLRGYIRRASWVEIAYQQR 122 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + G +A HE DHL G ++DH+ Sbjct: 123 DGSQVSTRLSGFVARIFLHEFDHLIGKTWLDHVE 156 >gi|194468417|ref|ZP_03074403.1| peptide deformylase [Lactobacillus reuteri 100-23] gi|194453270|gb|EDX42168.1| peptide deformylase [Lactobacillus reuteri 100-23] Length = 186 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 19/168 (11%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K + +P+LR+ + + ++ + L +M+E + + G+GLAA Sbjct: 5 KDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMEYLEVSQDPELCEKYKLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104 Q+GV ++ + + A + P+ V INP I++ S + EGCLS+ D V Sbjct: 65 QVGVSKQMAAVLVPAPAEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 124 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT+RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 125 PRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172 >gi|302563993|ref|NP_001181771.1| peptide deformylase, mitochondrial [Macaca mulatta] Length = 243 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L Sbjct: 69 QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPLQVLALELP 128 Query: 65 DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + R+ P VF+NP + + EGC S+ + A V R + Sbjct: 129 EALCREFPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +D N + A G A +QHE+DHL G LFID + Sbjct: 189 QISGLDPNGEQVAWQASGWAARIIQHEMDHLQGCLFIDKMD 229 >gi|296331515|ref|ZP_06873986.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674182|ref|YP_003865854.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str. W23] gi|296151328|gb|EFG92206.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412426|gb|ADM37545.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str. W23] Length = 184 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 + +V P LR + P+E + +M+E + ++ G+GLA Sbjct: 3 TMENIVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105 A QI + R++ + +D + + NPKI++ S + + EGCLS+ + V Sbjct: 63 APQINIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R A I V+ ++ I G A QHE+DHLNG++F DH+ + Sbjct: 123 RYARIRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|312868986|ref|ZP_07729164.1| peptide deformylase [Lactobacillus oris PB013-T2-3] gi|311095489|gb|EFQ53755.1| peptide deformylase [Lactobacillus oris PB013-T2-3] Length = 186 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 19/170 (11%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+ + + ++ + L M+E + + G+GLAA Sbjct: 5 KDIVRDGDPVLRKRAAKVSFPLSDEDQELAKKMMEYLEVSQDPELCEKYKLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104 Q+GV ++ + + P V INP I++ S + EGCLS+ D V Sbjct: 65 QVGVSKQMAAVLVPATEEGGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 124 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 R IT+RY D N + + A QHE+DHL+G+LF DH+++ K Sbjct: 125 PRHDRITLRYQDTNGEKHQVRLKNYPAIVCQHEIDHLHGMLFYDHINKQK 174 >gi|195055504|ref|XP_001994657.1| GH17361 [Drosophila grimshawi] gi|193892420|gb|EDV91286.1| GH17361 [Drosophila grimshawi] Length = 234 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----- 61 DP+LR + + + +I ++D M+ V+ D +G+AA QIGV R++ + Sbjct: 51 GDPVLRDRAAEVPADCVNSKEIHAIVDQMVHVLRKFDCVGIAAPQIGVSLRIIAMEFRRS 110 Query: 62 ---DLQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 DL D +++ M V INP++ + + EGC+S+ + A+V+R + + Sbjct: 111 IKKDLSDATYKRRQMSELPLTVLINPQLTVTNYTKHKHPEGCMSVRGFSAEVERYEGVKL 170 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D H + G A QHE++HL+G L+ DH+ R Sbjct: 171 SGLDRQGVHSELELSGWNARIAQHEMEHLDGKLYTDHMDR 210 >gi|228909800|ref|ZP_04073623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 200] gi|228850089|gb|EEM94920.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 200] Length = 184 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIGV +++ + + D NPKII+ S + + EGCLS+ + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|218899130|ref|YP_002447541.1| peptide deformylase [Bacillus cereus G9842] gi|228902480|ref|ZP_04066634.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 4222] gi|228966997|ref|ZP_04128035.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar sotto str. T04001] gi|218546057|gb|ACK98451.1| peptide deformylase [Bacillus cereus G9842] gi|228792731|gb|EEM40295.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar sotto str. T04001] gi|228857224|gb|EEN01730.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 4222] Length = 184 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + EK + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIGV +++ + + D NPKII+ S + + EGCLS+ + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|165760871|pdb|2OKL|A Chain A, Crystal Structure Of Peptide Deformylase 2 With Actinonin From Bacillus Cereus gi|165760872|pdb|2OKL|B Chain B, Crystal Structure Of Peptide Deformylase 2 With Actinonin From Bacillus Cereus Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 4 TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 63 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIGV +++ + + D NPKII+ S + + EGCLS+ + V Sbjct: 64 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 124 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 171 >gi|229180249|ref|ZP_04307593.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 172560W] gi|228603458|gb|EEK60935.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 172560W] Length = 184 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIGV +++ + + D NPKII+ S + + EGCLS+ + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|311063862|ref|YP_003970587.1| peptide deformylase [Bifidobacterium bifidum PRL2010] gi|310866181|gb|ADP35550.1| Peptide deformylase [Bifidobacterium bifidum PRL2010] Length = 217 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 14/161 (8%) Query: 3 KKPLVIFPDPILRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 P+V +P+LR+ + ++ + LID M M G+GLAA QIG+ L Sbjct: 28 ILPIVQAGEPVLRQ--QTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLAL 85 Query: 59 VVIDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 V++ +P V INP D + EGCLS Y+A +R I Sbjct: 86 AVVEDHVRDDEDDPREIAEFPFHVIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDI 145 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 T R+ D N + G A QHE DHL+G L+ID Sbjct: 146 TARWADENGKQHEERLHGWPARIFQHETDHLSGELYIDKAE 186 >gi|118479185|ref|YP_896336.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam] gi|196045777|ref|ZP_03113006.1| peptide deformylase [Bacillus cereus 03BB108] gi|118418410|gb|ABK86829.1| polypeptide deformylase [Bacillus thuringiensis str. Al Hakam] gi|196023217|gb|EDX61895.1| peptide deformylase [Bacillus cereus 03BB108] Length = 184 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 A QIG+ +++ + + D NPKII+ S + + Q EGCLS+ + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|226438315|pdb|3G5K|A Chain A, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438316|pdb|3G5K|B Chain B, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438317|pdb|3G5K|C Chain C, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438318|pdb|3G5K|D Chain D, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438319|pdb|3G5P|A Chain A, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438320|pdb|3G5P|B Chain B, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438321|pdb|3G5P|C Chain C, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438322|pdb|3G5P|D Chain D, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target Length = 183 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L Sbjct: 9 QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 68 Query: 65 DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + R+ P VF+NP + + EGC S+ + A V R + Sbjct: 69 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 128 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +D N + + A G A +QHE+DHL G LFID + Sbjct: 129 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 169 >gi|218231086|ref|YP_002368775.1| peptide deformylase [Bacillus cereus B4264] gi|218159043|gb|ACK59035.1| peptide deformylase [Bacillus cereus B4264] Length = 184 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEDVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIGV +++ + + D NPKII+ S + + EGCLS+ + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|294498110|ref|YP_003561810.1| peptide deformylase [Bacillus megaterium QM B1551] gi|295703459|ref|YP_003596534.1| peptide deformylase [Bacillus megaterium DSM 319] gi|294348047|gb|ADE68376.1| peptide deformylase [Bacillus megaterium QM B1551] gi|294801118|gb|ADF38184.1| peptide deformylase [Bacillus megaterium DSM 319] Length = 184 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ P LR V++ + + + ++ ++LE + ++ GIGLAA Q Sbjct: 6 DIIQDGHPTLREVAKEVPLPASEEDKKILHSLLEYVKNSQDPEIAAKYGLRSGIGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108 I V R++ + + D + NPKII+ S + + EGCLS+ D V R A Sbjct: 66 INVSKRMIGVHVTDEKGKLYSYALFNPKIISHSVEKTYLTGGEGCLSVDQDIPGFVPRYA 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ + I GL A QHE+DHL+GI+F D++++ Sbjct: 126 RITVKGTTLEGEEVKIRLKGLPAVVFQHEIDHLDGIMFYDYINKE 170 >gi|224282525|ref|ZP_03645847.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171] gi|310286987|ref|YP_003938245.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|313139678|ref|ZP_07801871.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171] gi|309250923|gb|ADO52671.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|313132188|gb|EFR49805.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171] Length = 217 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 70/161 (43%), Gaps = 14/161 (8%) Query: 3 KKPLVIFPDPILRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 P+V +P+LR+ + ++ + LID M M G+GLAA QIG+ L Sbjct: 28 ILPIVQAGEPVLRQ--QTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLAL 85 Query: 59 VVIDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 V++ +P INP D + EGCLS Y+A +R I Sbjct: 86 AVVEDHVRDDEDDPREIAEFPFHAIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDI 145 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 T R+ D N + G A QHE DHL+G L+ID Sbjct: 146 TARWTDENGKQHEERLHGWPARIFQHETDHLSGELYIDKAE 186 >gi|89099513|ref|ZP_01172388.1| peptide deformylase [Bacillus sp. NRRL B-14911] gi|89085666|gb|EAR64792.1| peptide deformylase [Bacillus sp. NRRL B-14911] Length = 184 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 16/175 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 ++ P LR+ + + +++ + M+E + ++ GIGLA Sbjct: 3 TVADIIRDGHPSLRKTAEEVPMPPSAEDKQTLAEMMEYVRNSQNPALAEKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPD-YRADVK 105 A QI L R++ + + D + NPKI++ S + + EGCLS+ + + V Sbjct: 63 APQIDCLKRMIAVHVTDTDGKLYSFALFNPKIVSHSVEKAFLTSGEGCLSVDEPFPGFVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R A IT++ D + + + GL A QHE+DHLNG++F DH+++ I K Sbjct: 123 RYARITLKAFDIDGREVKLRLRGLPAIVFQHEIDHLNGVMFYDHINKENPFEIMK 177 >gi|242373503|ref|ZP_04819077.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1] gi|242348866|gb|EES40468.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1] Length = 162 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +K LV PIL++ P+ + + ++ L+ ++ + +Y+ + + A QI V R+ + Sbjct: 1 MTRKKLVKSSHPILKKEIAPVTEFDENLSLLLKDLEDTLYAEEAAAICAPQINVNQRVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + INP + + SD+ EG +++P+ +V RS I ++ D N Sbjct: 61 IDM----EMDGLLQLINPVVQSQSDEMITDLEGSITLPNTFGEVNRSKMIVIQSSDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DHLNGILF + +RL Sbjct: 117 QVELTAYDDVARMILHMIDHLNGILFTEKANRL 149 >gi|258438742|ref|ZP_05689895.1| formylmethionine deformylase [Staphylococcus aureus A9299] gi|257848001|gb|EEV71994.1| formylmethionine deformylase [Staphylococcus aureus A9299] Length = 162 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ ++ + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVIRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153 >gi|195389911|ref|XP_002053615.1| GJ23993 [Drosophila virilis] gi|194151701|gb|EDW67135.1| GJ23993 [Drosophila virilis] Length = 234 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----- 61 DP+LR + P E ++S ++ ++D M+ V+ D +G+AA QIG+ R++ + Sbjct: 51 GDPVLRDRAAVVPAECVDSKEVQAIVDQMVHVLRKFDCVGIAAPQIGISLRIIAMEFRRS 110 Query: 62 ---DLQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 DL + ++ M V INPK+ + + EGC+S+ Y A+V+R + + Sbjct: 111 IKQDLSEATYKARQMSELPLTVLINPKLTVTNYTKHKHPEGCMSVRGYSAEVERYEGVKL 170 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ H + G A QHE+DHL+G L+ DH+ R Sbjct: 171 SGVNRQGAHSELELSGWNARIAQHEMDHLDGKLYTDHMDR 210 >gi|229174643|ref|ZP_04302171.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3] gi|228608845|gb|EEK66139.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3] Length = 184 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSIPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 A QIG+ +++ + + D NPKII+ S + + Q EGCLS+ + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|229031607|ref|ZP_04187606.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1271] gi|228729701|gb|EEL80682.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1271] Length = 184 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSMPASEEDTTALKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 A QIG+ +++ + + D NPKII+ S + + Q EGCLS+ + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|227544835|ref|ZP_03974884.1| peptide deformylase [Lactobacillus reuteri CF48-3A] gi|227185182|gb|EEI65253.1| peptide deformylase [Lactobacillus reuteri CF48-3A] Length = 183 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 19/168 (11%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K + +P+LR+ + + ++ + L +M++ + + G+GLAA Sbjct: 2 KDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAAP 61 Query: 51 QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104 Q+GV ++ + + A + P+ V INP I++ S + EGCLS+ D V Sbjct: 62 QVGVSKQMAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 121 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT+RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 122 PRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 169 >gi|271969762|ref|YP_003343958.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021] gi|270512937|gb|ACZ91215.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021] Length = 174 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVV 60 + L+ P P+L +R ++ + ++ ++L M + GLAA QIG+ +RL+ Sbjct: 8 TPRELIAAPHPVLTARARAVDPADPRVVVAAADLLATMRRARHCTGLAAPQIGLDWRLLS 67 Query: 61 IDLQDHAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +D+ H + +V NP+++ S + +EGCLS+P DV R+ ITVR Sbjct: 68 VDVSLHPGARSCAGELVVANPRLVAAS-RWEPAREGCLSVPGLTGDVLRATRITVRGERP 126 Query: 118 -NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I AD A C+QH+LDHL+G+LF+D ++R Sbjct: 127 GTGAPVTIDADAFEARCIQHQLDHLDGVLFLDRVTR 162 >gi|229117467|ref|ZP_04246841.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-3] gi|228665972|gb|EEL21440.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-3] Length = 181 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Query: 4 KPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAV 50 K ++ DPILR V+ + EK + + +I+ M E GIGLAA Sbjct: 2 KDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAP 61 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRS 107 QIGV +++ + + D NPKII+ S + + EGCLS+ + V R Sbjct: 62 QIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPRY 121 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 122 TRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|302870289|ref|YP_003838926.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315503435|ref|YP_004082322.1| formylmethionine deformylase [Micromonospora sp. L5] gi|302573148|gb|ADL49350.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315410054|gb|ADU08171.1| formylmethionine deformylase [Micromonospora sp. L5] Length = 187 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 83/154 (53%), Gaps = 6/154 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVV 60 + +V P+P+L R ++ +++++ L +++ M + G +GLAA Q+GV ++ Sbjct: 22 AVRAVVTAPEPVLSRPGPEVDPTSAEVVRLAADLVATMRVSPGCVGLAAPQVGVSAQVFA 81 Query: 61 IDLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MD 116 +D+ H V N +++ S + +EGC+S+PD DVKR++ + V + Sbjct: 82 VDVTGHPKAVTVHGTFVLCNARVVEAS-RWKAGREGCMSVPDLTGDVKRASRLVVEGALP 140 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + + DG A LQHE+DH G+LF+D + Sbjct: 141 GSGEPVRLVTDGFEARALQHEIDHCAGLLFLDRV 174 >gi|52141515|ref|YP_085313.1| peptide deformylase [Bacillus cereus E33L] gi|51974984|gb|AAU16534.1| polypeptide deformylase [Bacillus cereus E33L] Length = 184 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR+V+ + ++ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRKVAEEVVIPASKEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 A QIG+ +++ + + D NPKII+ S + + Q EGCLS+ + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|89900986|ref|YP_523457.1| peptide deformylase [Rhodoferax ferrireducens T118] gi|89345723|gb|ABD69926.1| Peptide deformylase [Rhodoferax ferrireducens T118] Length = 186 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 73/173 (42%), Gaps = 14/173 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R++ P+ + ++ LI +ML+ M + DG GLAA QIGV +LV Sbjct: 1 MAIREILKMGDPRLLRIAPPVTLFDTDELHLLISDMLDTMLAADGAGLAAPQIGVDLQLV 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDF-------SVYQEGCLSIPDYRADVKR 106 + A V +NP I EGCLS+P RA V R Sbjct: 61 IFGSNARNPRYPQAPVVPQTVLLNPVITPLPPSENDATPLQVEDWEGCLSVPGLRAMVPR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 A I D +G A +QHE DHL G L+ + R T Sbjct: 121 FARIRYTGFDQYGDPINRTVEGFHARVVQHECDHLIGKLYPMRVRDFSRFGFT 173 >gi|300909945|ref|ZP_07127405.1| peptide deformylase [Lactobacillus reuteri SD2112] gi|300892593|gb|EFK85953.1| peptide deformylase [Lactobacillus reuteri SD2112] Length = 186 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 19/168 (11%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K + +P+LR+ + + ++ + L +M++ + + G+GLAA Sbjct: 5 KDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104 Q+GV ++ + + A + P+ V INP I++ S + EGCLS+ D V Sbjct: 65 QVGVSKQMAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 124 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT+RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 125 PRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172 >gi|225351798|ref|ZP_03742821.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158142|gb|EEG71425.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 218 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 70/158 (44%), Gaps = 11/158 (6%) Query: 5 PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR+ + E S + LI+ M M G+GLAA QIG+ L V++ Sbjct: 30 PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAVVE 89 Query: 63 ---------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A V INP + + EGCLS Y+A KR I R Sbjct: 90 DHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDIIAR 149 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + + + G A QHE DHL+G L+ID Sbjct: 150 WQDEDGKQHEEHLHGWPARIFQHETDHLSGELYIDKAE 187 >gi|229098440|ref|ZP_04229384.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-29] gi|228684963|gb|EEL38897.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-29] Length = 182 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Query: 4 KPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAV 50 K ++ DPILR V+ + EK + + +I+ M E GIGLAA Sbjct: 2 KDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAP 61 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRS 107 QIGV +++ + + D NPKII+ S + + EGCLS+ + V R Sbjct: 62 QIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPRY 121 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 122 TRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|302523131|ref|ZP_07275473.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|302432026|gb|EFL03842.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 214 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE--VMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + P E + + M G+GLAA QIGV RL V++ Sbjct: 25 PIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 84 Query: 63 LQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + V +NP + + + EGCLS+P ++A V R A + + Sbjct: 85 DPATVPEEVRRVREREPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R D + G A +QHE DHL+G L++D Sbjct: 145 RAEDEHGTALDEEVRGWPARIVQHETDHLDGTLYVDR 181 >gi|228922725|ref|ZP_04086023.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228960236|ref|ZP_04121893.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pakistani str. T13001] gi|228980660|ref|ZP_04140967.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis Bt407] gi|229081226|ref|ZP_04213735.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock4-2] gi|229146546|ref|ZP_04274916.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST24] gi|228636908|gb|EEK93368.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST24] gi|228702088|gb|EEL54565.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock4-2] gi|228779064|gb|EEM27324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis Bt407] gi|228799504|gb|EEM46464.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pakistani str. T13001] gi|228836780|gb|EEM82123.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 181 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Query: 4 KPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAV 50 K ++ DPILR V+ + E+ + + +I+ M E GIGLAA Sbjct: 2 KDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAP 61 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRS 107 QIGV +++ + + D NPKII+ S + + EGCLS+ + V R Sbjct: 62 QIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPRY 121 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 122 TRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|119026311|ref|YP_910156.1| peptide deformylase [Bifidobacterium adolescentis ATCC 15703] gi|154488206|ref|ZP_02029323.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis L2-32] gi|158512525|sp|A1A2Z1|DEF_BIFAA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|118765895|dbj|BAF40074.1| peptide deformylase 1 [Bifidobacterium adolescentis ATCC 15703] gi|154083357|gb|EDN82402.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis L2-32] Length = 218 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 70/157 (44%), Gaps = 11/157 (7%) Query: 3 KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ ++ + + LID M M G+GLAA QIG+ L V Sbjct: 28 IMPIVQAGEPVLRQQTIAYDGQLSRKTLDKLIDTMRTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 I--------DLQDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + D + P INP + + EGCLS Y+A KR IT Sbjct: 88 VEDHVCEGDDGDPREAAEFPFHAIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDIT 147 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R+ D + + G A QHE DHL+G L+ID Sbjct: 148 ARWQDEDGNKHEEHLHGWPARIFQHETDHLSGELYID 184 >gi|311257108|ref|XP_003126954.1| PREDICTED: peptide deformylase, mitochondrial-like [Sus scrofa] Length = 249 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP LR V+ P+E ++ L+ +++VM +GL+A Q+GV +++ ++ Sbjct: 75 QVGDPALRAVAAPVEPAQLAGPELQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLALEFP 134 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D VF+NP + + EGC S+ + A V R + Sbjct: 135 DALFHACAPRLREIRQMEPFPLHVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 194 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +D + + A G A +QHE+DHL G+LFID + Sbjct: 195 QISGLDPRGEPVVWQASGWAARIIQHEMDHLQGLLFIDKMD 235 >gi|82750819|ref|YP_416560.1| peptide deformylase [Staphylococcus aureus RF122] gi|82656350|emb|CAI80768.1| probable peptide deformylase 1 [Staphylococcus aureus RF122] gi|323440990|gb|EGA98697.1| peptide deformylase [Staphylococcus aureus O11] gi|323442306|gb|EGA99936.1| peptide deformylase [Staphylococcus aureus O46] Length = 162 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +NPKII S++ EG +++PD +V RS I V D N Sbjct: 61 IDM----EMEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A +A + H +D +NGI F + R+ D Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153 >gi|195389909|ref|XP_002053614.1| GJ23992 [Drosophila virilis] gi|194151700|gb|EDW67134.1| GJ23992 [Drosophila virilis] Length = 203 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 17/159 (10%) Query: 10 PDPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR + + E+++S +I +++D M++V+ D +G+AA Q+GV R++V++ ++ Sbjct: 20 GDPVLRVRAEEVPPERLDSHEINDIVDQMVKVLRHYDCVGVAAPQLGVPLRIIVMEFREG 79 Query: 67 AH-----------RKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + +P+ VFINPKI +D + EGC+S+ + V R + V Sbjct: 80 KRAQFTAEDYEQRKMSPLPLSVFINPKIEIITDAQHTHPEGCMSVRGFSGQVARYDRVRV 139 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + G A QHE+DHLNGI+++D + Sbjct: 140 TGIGMLGTPSELELVGWSARIAQHEMDHLNGIIYVDRMD 178 >gi|259503065|ref|ZP_05745967.1| peptide deformylase [Lactobacillus antri DSM 16041] gi|259168931|gb|EEW53426.1| peptide deformylase [Lactobacillus antri DSM 16041] Length = 196 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 19/168 (11%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+ + + ++ + L M+E + + G+GLAA Sbjct: 15 KDIVRDGDPVLRKRAAKVSFPLSDEDQTLAKKMMEYLEVSQDPQLCEKYKLRAGVGLAAP 74 Query: 51 QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104 Q+GV ++ + + P V INP I++ S + EGCLS+ D V Sbjct: 75 QVGVSKQMAAVLVPATEEDGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 134 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT+RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 135 PRHDRITLRYQDTNGEQHQVRLKNYPAIVCQHEIDHLHGMLFYDHINK 182 >gi|30264046|ref|NP_846423.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47529482|ref|YP_020831.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186882|ref|YP_030134.1| peptide deformylase [Bacillus anthracis str. Sterne] gi|49478480|ref|YP_038035.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321366|ref|ZP_00394325.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis str. A2012] gi|165872897|ref|ZP_02217522.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167633479|ref|ZP_02391803.1| peptide deformylase [Bacillus anthracis str. A0442] gi|167639508|ref|ZP_02397779.1| peptide deformylase [Bacillus anthracis str. A0193] gi|170687132|ref|ZP_02878350.1| peptide deformylase [Bacillus anthracis str. A0465] gi|170705828|ref|ZP_02896291.1| peptide deformylase [Bacillus anthracis str. A0389] gi|177655203|ref|ZP_02936812.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190566155|ref|ZP_03019074.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|196035869|ref|ZP_03103271.1| peptide deformylase [Bacillus cereus W] gi|196038641|ref|ZP_03105949.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|218905105|ref|YP_002452939.1| peptide deformylase [Bacillus cereus AH820] gi|227816748|ref|YP_002816757.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|228916611|ref|ZP_04080177.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935289|ref|ZP_04098115.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947693|ref|ZP_04109983.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093023|ref|ZP_04224154.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-42] gi|229603739|ref|YP_002868274.1| peptide deformylase [Bacillus anthracis str. A0248] gi|254683741|ref|ZP_05147601.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066] gi|254721576|ref|ZP_05183365.1| peptide deformylase [Bacillus anthracis str. A1055] gi|254736086|ref|ZP_05193792.1| peptide deformylase [Bacillus anthracis str. Western North America USA6153] gi|254743977|ref|ZP_05201660.1| peptide deformylase [Bacillus anthracis str. Kruger B] gi|254754244|ref|ZP_05206279.1| peptide deformylase [Bacillus anthracis str. Vollum] gi|254758065|ref|ZP_05210092.1| peptide deformylase [Bacillus anthracis str. Australia 94] gi|301055465|ref|YP_003793676.1| peptide deformylase [Bacillus anthracis CI] gi|39931064|sp|Q81MQ9|DEF2_BACAN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|30258691|gb|AAP27909.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47504630|gb|AAT33306.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180809|gb|AAT56185.1| polypeptide deformylase [Bacillus anthracis str. Sterne] gi|49330036|gb|AAT60682.1| polypeptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164711384|gb|EDR16936.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167512567|gb|EDR87942.1| peptide deformylase [Bacillus anthracis str. A0193] gi|167530885|gb|EDR93572.1| peptide deformylase [Bacillus anthracis str. A0442] gi|170129368|gb|EDS98232.1| peptide deformylase [Bacillus anthracis str. A0389] gi|170668749|gb|EDT19494.1| peptide deformylase [Bacillus anthracis str. A0465] gi|172080253|gb|EDT65344.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190563074|gb|EDV17040.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|195991518|gb|EDX55484.1| peptide deformylase [Bacillus cereus W] gi|196030364|gb|EDX68963.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|218537238|gb|ACK89636.1| peptide deformylase [Bacillus cereus AH820] gi|227006107|gb|ACP15850.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|228690394|gb|EEL44180.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-42] gi|228812213|gb|EEM58544.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824454|gb|EEM70260.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228843190|gb|EEM88272.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268147|gb|ACQ49784.1| peptide deformylase [Bacillus anthracis str. A0248] gi|300377634|gb|ADK06538.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI] Length = 184 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 A QIG+ +++ + + D NPKII+ S + + Q EGCLS+ + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|206971224|ref|ZP_03232175.1| peptide deformylase [Bacillus cereus AH1134] gi|206733996|gb|EDZ51167.1| peptide deformylase [Bacillus cereus AH1134] Length = 184 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ +PILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGNPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIGV +++ + + D NPKII+ S + + EGCLS+ + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|75762798|ref|ZP_00742622.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489709|gb|EAO53101.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 221 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + EK + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIGV +++ + + D NPKII+ S + + EGCLS+ + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|183602110|ref|ZP_02963478.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219683022|ref|YP_002469405.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|241191342|ref|YP_002968736.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196748|ref|YP_002970303.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218603|gb|EDT89246.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219620672|gb|ACL28829.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|240249734|gb|ACS46674.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251302|gb|ACS48241.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177468|gb|ADC84714.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794335|gb|ADG33870.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9] Length = 217 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 11/157 (7%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR + S + LI+ M + M G+GLA QIG+ + V Sbjct: 27 VLPIVEAGEPVLREQCVRYDGQLSKHTLHKLIETMHKTMLDAPGVGLAGPQIGLNLAIAV 86 Query: 61 I-DLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + D + +P INP ++ + EGCLS Y+A KR I Sbjct: 87 VEDHANGDDDGDPREIAEFPFHAIINPVYRPAGEETRSFYEGCLSFDGYQAVRKRYLDII 146 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + D + + + G A QHE DHL+G L+ID Sbjct: 147 AHWHDEDGKEHEEHLHGWPARIFQHETDHLSGELYID 183 >gi|119910219|ref|XP_001255524.1| PREDICTED: peptide deformylase-like [Bos taurus] gi|119936845|ref|XP_001251630.1| PREDICTED: peptide deformylase-like [Bos taurus] gi|297485396|ref|XP_002694953.1| PREDICTED: peptide deformylase-like [Bos taurus] gi|296478169|gb|DAA20284.1| peptide deformylase-like [Bos taurus] Length = 250 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP LR V+ P+E ++ L++ +++VM +GL+A Q+GV +++ ++ Sbjct: 76 QVGDPALRAVAAPVEPAQLAGPELQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLALEFP 135 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + VF+NP + + EGC S+ + A V R + Sbjct: 136 ETLFRACAPRVREARQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 195 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +D + + A G A +QHE+DHL G LFID + Sbjct: 196 QISGLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 236 >gi|302332819|gb|ADL23012.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus JKD6159] Length = 162 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +NPKII S++ EG +++PD +V RS I V D N Sbjct: 61 IDM----EMEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A +A + H +D +NGI F + R+ + Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTEK 153 >gi|318057272|ref|ZP_07975995.1| peptide deformylase [Streptomyces sp. SA3_actG] gi|318076700|ref|ZP_07984032.1| peptide deformylase [Streptomyces sp. SA3_actF] Length = 214 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE--VMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + P E + + M G+GLAA QIGV RL V++ Sbjct: 25 PIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 84 Query: 63 LQ-------DHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + P+ V +NP + + + EGCLS+P ++A V R A + + Sbjct: 85 DPATVPEEVRRVRERAPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVVRL 144 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R D + + G A +QHE DHL+G L++D Sbjct: 145 RAEDEHGRALDEEVRGWSARIVQHETDHLDGTLYVDR 181 >gi|47565850|ref|ZP_00236889.1| polypeptide deformylase [Bacillus cereus G9241] gi|47557130|gb|EAL15459.1| polypeptide deformylase [Bacillus cereus G9241] Length = 184 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 A QIG+ +++ + + D NPKII+ S + + Q EGCLS+ + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|56964188|ref|YP_175919.1| peptide deformylase [Bacillus clausii KSM-K16] gi|81678844|sp|Q5WFA2|DEF_BACSK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56910431|dbj|BAD64958.1| peptide deformylase [Bacillus clausii KSM-K16] Length = 183 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 16/166 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V +PILR+V+ P+E + + + +MLE + ++ G+GLAA Q Sbjct: 6 DIVREGNPILRKVAEPVELPLTDEDKQTLVDMLEFIKNSQDPEIAEKYGLRPGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSA 108 IG+ RL I D M NPK+++ S + + + EGCLS+ D V R A Sbjct: 66 IGISKRLFAIHATDENGNLYSMGIANPKVVSHSVETNELENGEGCLSVDRDVPGLVPRRA 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +T+ +D + G +A QHELDHL+GI+F D + L+ Sbjct: 126 RLTITGVDHEGNDVRMRLRGYIAIVFQHELDHLDGIMFYDRIEGLE 171 >gi|327287510|ref|XP_003228472.1| PREDICTED: peptide deformylase, mitochondrial-like [Anolis carolinensis] Length = 236 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR ++ P+E D+ LI ++ +M + L+A Q+G+ ++ V + Sbjct: 62 QVGDPVLRSLAAPVEPSQVTGKDVQALIQRLVRLMRRERCVALSAPQVGIPLQVFVAEYP 121 Query: 65 DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 ++P VFINP + + EGC S+ + A V R + Sbjct: 122 TRLLEEHPPDVRQARQMAPFPLRVFINPTMRVLDSQVVSHPEGCRSVHGFSACVPRFLAV 181 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V ++ + A G A +QHE+DHL GIL++D + Sbjct: 182 QVAGLNEAGEESSWEACGWAARIVQHEMDHLQGILYVDRME 222 >gi|148543862|ref|YP_001271232.1| peptide deformylase [Lactobacillus reuteri DSM 20016] gi|184153262|ref|YP_001841603.1| peptide deformylase [Lactobacillus reuteri JCM 1112] gi|227364768|ref|ZP_03848817.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|325682605|ref|ZP_08162122.1| peptide deformylase [Lactobacillus reuteri MM4-1A] gi|167012064|sp|A5VJ71|DEF_LACRD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229487489|sp|B2G6P1|DEF_LACRJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148530896|gb|ABQ82895.1| peptide deformylase [Lactobacillus reuteri DSM 20016] gi|183224606|dbj|BAG25123.1| N-formylmethionyl-tRNA deformylase [Lactobacillus reuteri JCM 1112] gi|227070227|gb|EEI08601.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|324978444|gb|EGC15394.1| peptide deformylase [Lactobacillus reuteri MM4-1A] Length = 186 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 19/168 (11%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K + +P+LR+ + + ++ + L +M++ + + G+GLAA Sbjct: 5 KDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMKYLEVSQDPELCKKYKLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104 Q+GV ++ + + + P+ V INP I++ S + EGCLS+ D V Sbjct: 65 QVGVSKQMAAVLVPAPDEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 124 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT+RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 125 PRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172 >gi|228929021|ref|ZP_04092053.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229123495|ref|ZP_04252694.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 95/8201] gi|228659982|gb|EEL15623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 95/8201] gi|228830828|gb|EEM76433.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 181 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 16/166 (9%) Query: 4 KPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAV 50 K ++ DPILR V+ + E+ + + +I+ M E GIGLAA Sbjct: 2 KDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAP 61 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRS 107 QIG+ +++ + + D NPKII+ S + + Q EGCLS+ + V R Sbjct: 62 QIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVPRY 121 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 122 TRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|73957448|ref|XP_853641.1| PREDICTED: similar to peptide deformylase-like protein [Canis familiaris] Length = 242 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP LR V+ P+E + L+ +++VM +GL+A Q+GV +++ + Sbjct: 68 QVGDPALRTVAAPVEPAQLAGPQLQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLAFEFP 127 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + V +NP + + EGC S+ + A V R + Sbjct: 128 EALFRACAPRLRETRQMEPFPLRVVVNPSLRVLDSRRVTFPEGCESVAGFLACVPRFQAV 187 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +D + + A G A +QHE+DHL G LFID + Sbjct: 188 QISGLDPKGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 228 >gi|119494635|ref|ZP_01624754.1| peptide deformylase [Lyngbya sp. PCC 8106] gi|119452038|gb|EAW33257.1| peptide deformylase [Lyngbya sp. PCC 8106] Length = 143 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 51/125 (40%), Positives = 72/125 (57%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ ++ I +++ D LI ML+ MYS DGIGLAA Q+GV +L+VID + Sbjct: 19 IHYLGDRVLRQSAKRISRVDDDTRRLIREMLQTMYSADGIGLAAPQVGVQKQLIVIDCEP 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P++ INP I S + S +QEGCLSIP DV R I V + D + + I Sbjct: 79 DNAATPPLILINPTIKKSSQEISPFQEGCLSIPGVYMDVTRPEVIEVSFKDETGRPRTIR 138 Query: 126 ADGLL 130 A+ LL Sbjct: 139 ANELL 143 >gi|295397404|ref|ZP_06807493.1| peptide deformylase [Aerococcus viridans ATCC 11563] gi|294974368|gb|EFG50106.1| peptide deformylase [Aerococcus viridans ATCC 11563] Length = 205 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 21/173 (12%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 + ++ P LR+ + I ++ +I L D+M+E + ++ G+G+A Sbjct: 18 TMEDIIREGHPTLRKKAEKITFPVSEEIRQLADDMMEFLRNSQDEELAEKYGLRGGVGIA 77 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNP-----MVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 A Q+ V ++ + + D +N VF+NP++++ S + EGCLS+ D Sbjct: 78 APQLDVSIQMTALLVPDLMDPENAEPLLNGVFLNPRVVSHSVEGVCLREGEGCLSVDRDV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R A ITV Y D + G A LQHE+DHLNGI+F DH+S Sbjct: 138 PGYVPRHARITVTYNDIDGNEYKKRFSGYPAIVLQHEIDHLNGIMFYDHISEE 190 >gi|195444659|ref|XP_002069969.1| GK11285 [Drosophila willistoni] gi|194166054|gb|EDW80955.1| GK11285 [Drosophila willistoni] Length = 173 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 17/156 (10%) Query: 10 PDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LRR + + +K+N +I ID M+ V+ D +G+AA QIGV R++V++ + Sbjct: 13 GDPVLRRRAEEVSGDKVNSPEIKETIDCMVHVLRHYDCVGVAAPQIGVPLRIIVMEFHEG 72 Query: 67 AHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + P VFINP++ +D + EGC+S+ Y A V+R + V Sbjct: 73 KKNQFPAEIYAERKMSTLSLAVFINPELEILNDKQHKHPEGCMSVRGYSAQVERHDRVRV 132 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + + + +G A QHE+DHLNGI++I+ Sbjct: 133 KGIGMMGTPSELELEGWSARIAQHEMDHLNGIIYIE 168 >gi|60117243|gb|AAX14403.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila mojavensis] Length = 134 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 8/133 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V Sbjct: 1 MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I SD+ + +EGCLSIP+ ++KR ++TV Sbjct: 61 VDVQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIY 125 +Y D + + Q + Sbjct: 121 KYKDLDNEEQTLK 133 >gi|310819401|ref|YP_003951759.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|309392473|gb|ADO69932.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 200 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL--- 55 + +V +P+LR+ +R + + ++ LI M + M G+GLAA Q+GV Sbjct: 1 MVLKIVQAGEPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRL 60 Query: 56 --------YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 Y + + A + P+ V INP ++ + EGCLS+ + A V Sbjct: 61 VVVEDRAEYHVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALV 120 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R+ + V +D + + A G A LQHE DHL G L++D + Sbjct: 121 PRARGVRVEALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRMEP 168 >gi|229157552|ref|ZP_04285629.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 4342] gi|228626002|gb|EEK82752.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 4342] Length = 181 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 16/166 (9%) Query: 4 KPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAV 50 K ++ DPILR V+ + E+ + + +I+ M E GIGLAA Sbjct: 2 KDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAP 61 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRS 107 QIG+ +++ + + D NPKII+ S + + Q EGCLS+ + V R Sbjct: 62 QIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVPRY 121 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 122 TRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|115378396|ref|ZP_01465558.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|115364586|gb|EAU63659.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 188 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL--- 55 + +V +P+LR+ +R + + ++ LI M + M G+GLAA Q+GV Sbjct: 1 MVLKIVQAGEPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRL 60 Query: 56 --------YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 Y + + A + P+ V INP ++ + EGCLS+ + A V Sbjct: 61 VVVEDRAEYHVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALV 120 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R+ + V +D + + A G A LQHE DHL G L++D + Sbjct: 121 PRARGVRVEALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRMEP 168 >gi|126641011|ref|YP_001083995.1| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978] Length = 122 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 5/122 (4%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKNPMVFINPKIITFSDDFSV 89 M M +G+G+AA Q+ + R++++ + + A N +V +NP+I+ FS + + Sbjct: 1 MHATMLERNGVGIAAPQVYISKRIIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCL 60 Query: 90 YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +EGCLS+PD R V+R+ + V+Y+ + G A +QHE+DHLNGILF++ Sbjct: 61 GEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVER 120 Query: 150 LS 151 +S Sbjct: 121 IS 122 >gi|195157968|ref|XP_002019866.1| GL12633 [Drosophila persimilis] gi|194116457|gb|EDW38500.1| GL12633 [Drosophila persimilis] Length = 238 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 55 GDPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFKKS 114 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ P V INP + + + EGC+S+ + A+V+R + + Sbjct: 115 LQKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGVKL 174 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D +++ + G A QHE+DHL+G L+ D + R Sbjct: 175 SGLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214 >gi|126649799|ref|ZP_01722035.1| peptide deformylase [Bacillus sp. B14905] gi|126593518|gb|EAZ87463.1| peptide deformylase [Bacillus sp. B14905] Length = 185 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ P LR + ++ ++ + L ++ML+ + ++ GIGLAA Q Sbjct: 6 DIIREGHPTLRTKAEEVKFPLSDETRQLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108 + L R+ + LQD A + V INPKI++ S + + EGCLS+ + V R A Sbjct: 66 VNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNVPGYVPRHA 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV++ + + + + GL A QHELDHLNGI+F D ++ Sbjct: 126 RITVKFKTIDGEEKKMRLKGLSAIAFQHELDHLNGIMFYDRINE 169 >gi|125778498|ref|XP_001360007.1| GA16144 [Drosophila pseudoobscura pseudoobscura] gi|54639757|gb|EAL29159.1| GA16144 [Drosophila pseudoobscura pseudoobscura] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR+ + + +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 55 GDPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFKKS 114 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ P V INP + + + EGC+S+ + A+V+R + + Sbjct: 115 LQKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGVKL 174 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D +++ + G A QHE+DHL+G L+ D + R Sbjct: 175 SGLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214 >gi|170744220|ref|YP_001772875.1| peptide deformylase [Methylobacterium sp. 4-46] gi|168198494|gb|ACA20441.1| formylmethionine deformylase [Methylobacterium sp. 4-46] Length = 165 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 3/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M PL+ +PD LRR P + + ++ E + + IGL +G RL V Sbjct: 1 MAILPLLRYPDACLRRAVPPAALPDPRVAAFAADLAETLDAHRAIGLTGPHVGASIRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I L A M +NP+++ S + + ++EG +++P +V+R A + VRY D + Sbjct: 61 IRLGPGAP---LMTCVNPQVVHASPETARHREGSVAMPGVDEEVERPARVRVRYQDLDGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + + A+G LA CLQHE+D L+G+ + + Sbjct: 118 AREVEAEGFLAACLQHEIDQLDGVFWTE 145 >gi|256831860|ref|YP_003160587.1| Peptide deformylase [Jonesia denitrificans DSM 20603] gi|256685391|gb|ACV08284.1| Peptide deformylase [Jonesia denitrificans DSM 20603] Length = 245 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 PLV P+LRR + E ++ +D M ID M M G+GLAA Q+GV + V+ Sbjct: 49 VLPLVHAGHPVLRREAGRYEGQLGADFMAFIDAMNTTMVVAPGVGLAAPQVGVSLAVAVM 108 Query: 62 DLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 A +P V +NP D+ + EGCLS+P Y+A V R + V Sbjct: 109 RDPGAADDADPRERVAFPMRVLVNPVYEPVGDEKVSFFEGCLSVPGYQAVVARWRRVRVM 168 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 D G A QHE+DHL G+L++D Sbjct: 169 GWDETGAPVDEVLTGWPARIAQHEIDHLRGVLYVDR 204 >gi|311067971|ref|YP_003972894.1| peptide deformylase [Bacillus atrophaeus 1942] gi|310868488|gb|ADP31963.1| peptide deformylase [Bacillus atrophaeus 1942] Length = 184 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 + +V P LR V+ ++ + + M+E + ++ G+GLA Sbjct: 3 TMENIVRDGHPALREVAENVQLPASDTEKKQLAEMIEFVKNSQDPVLAEQHQLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105 A QI + R++ I +D + NPKII+ S + + EGCLS+ + V Sbjct: 63 APQININKRMIAIHAEDASGTLYSYALFNPKIISHSVEKSYLTSGEGCLSVDEAIPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R A I V+ + I G LA QHE+DHLNG++F DH+ + Sbjct: 123 RYARIRVKATTLEGEEIDIRLKGFLAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|169826942|ref|YP_001697100.1| peptide deformylase 2 [Lysinibacillus sphaericus C3-41] gi|168991430|gb|ACA38970.1| Peptide deformylase 2 [Lysinibacillus sphaericus C3-41] Length = 185 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ P LR + ++ ++ + L ++ML+ + ++ GIGLAA Q Sbjct: 6 DIIREGHPTLRTKAEEVKFPLSDETRQLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108 + L R+ + LQD A + V INPKI++ S + + EGCLS+ + V R A Sbjct: 66 VNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNVPGYVPRHA 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV++ + + + + GL A QHELDHLNG++F D ++ Sbjct: 126 RITVKFKTIDGEEKKMRLKGLPAIAFQHELDHLNGVMFYDRINE 169 >gi|325188477|emb|CCA23012.1| unnamed protein product [Albugo laibachii Nc14] Length = 179 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 4/154 (2%) Query: 2 VKKP--LVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 KKP L+ + LRR+ P+ + ++ L + M + + DG+G+AA Q+G RL Sbjct: 4 AKKPFELIFLGNSALRRICEPVFDVKCPEMKRLAEAMRKQLIEQDGVGIAAPQLGANCRL 63 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ +++ VF NPK+ FS + EGCLS+P Y VKRS I V+Y Sbjct: 64 FLMSMEESNVSALEAVF-NPKVTFFSKEMEKDFEGCLSVPHYSGIVKRSREIQVQYSTAL 122 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +G A QHELDHLNG+LF+D + Sbjct: 123 GMKEKRTLEGFPARVFQHELDHLNGVLFLDKVEP 156 >gi|229817289|ref|ZP_04447571.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM 20098] gi|229785078|gb|EEP21192.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM 20098] Length = 217 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 68/159 (42%), Gaps = 10/159 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + S + LID M M G+GLAA QIG+ L V Sbjct: 28 ILPIVQAGEPVLRQQTVAYTGQLSKHTLAKLIDAMRTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INP + + EGCLS Y+A KR I Sbjct: 88 LEDHIRDDEDDPREIGELPFHVIINPVYAPVGTETRSFYEGCLSFDGYQAVRKRWLDIDA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D N H G A QHE DHL+G L+ID Sbjct: 148 EWDDENGMHHKERMHGWPARIFQHETDHLSGELYIDKAE 186 >gi|229086539|ref|ZP_04218711.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-44] gi|228696856|gb|EEL49669.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-44] Length = 184 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + S+ + +I+ M+E GIG+AA Q Sbjct: 6 DVIREGNPILRAVAEEVPLPASEADLRTLKEMIEFVINSQNPEMVEKYNLRPGIGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108 IG+ R++ + + D NPKII+ S + + EGCLS+ + V R Sbjct: 66 IGISKRMIAVHVTDANETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGYVPRYT 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITV+ + + + GL A QHE+DHLNG++F DH++ Sbjct: 126 RITVKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 168 >gi|296130447|ref|YP_003637697.1| Peptide deformylase [Cellulomonas flavigena DSM 20109] gi|296022262|gb|ADG75498.1| Peptide deformylase [Cellulomonas flavigena DSM 20109] Length = 230 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 12/160 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+V P+LR ++RP + ++++ L+ + M + G+GLAA QIG+ L Sbjct: 26 AVAPIVQAGHPVLRAMARPYDGQVDDAELTELLALLHRTMRAAPGVGLAAPQIGLPLALA 85 Query: 60 VIDLQDHAH------RKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 V++ R+ P+ V +NP D+ + EGCLS+ Y+A V R Sbjct: 86 VVEDPGTGDGEAARVRERPVLPYRVLVNPTYAPAGDELVAFYEGCLSVEGYQAVVPRQRA 145 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + + +D G A +QHE DHL+G L++D Sbjct: 146 VHLTGLDETGATLDEVVTGWPARIVQHETDHLHGTLYLDR 185 >gi|323454882|gb|EGB10751.1| hypothetical protein AURANDRAFT_22058 [Aureococcus anophagefferens] Length = 175 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + L P LR ++P+ + + ++ ++++ M +G G+A QIG +R+ Sbjct: 20 AVRALPPLGTPCLREQAKPVPEAMFGTPALDAIVADLVDTMRDANGAGIAGPQIGEGWRI 79 Query: 59 VVIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 V++ + + VF+NP++ + EGCLSIP R V R++ + Sbjct: 80 FVVEGSGANPRYPYKPKLPLTVFVNPELEVVDEAPMEIFEGCLSIPGVRGRVARASKVRC 139 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + + A G A LQHE DHL+GILF D Sbjct: 140 AARRPDGSSFSVLAAGHAAGTLQHEQDHLDGILFPD 175 >gi|168184095|ref|ZP_02618759.1| putative peptide deformylase [Clostridium botulinum Bf] gi|237794165|ref|YP_002861717.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|182672791|gb|EDT84752.1| putative peptide deformylase [Clostridium botulinum Bf] gi|229261785|gb|ACQ52818.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 166 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54 M KP+++ D IL R+S I+K N +I+++ + + S G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D + FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKTYY-----FINPILEFIGDDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + N + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLNWEDCEMYLEGGLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|83941565|ref|ZP_00954027.1| peptide deformylase [Sulfitobacter sp. EE-36] gi|83847385|gb|EAP85260.1| peptide deformylase [Sulfitobacter sp. EE-36] Length = 131 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 2/130 (1%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M++ M + G+GLAA QIGV ++ V+D ++ + NP +I S + Y+E Sbjct: 1 MIDTMDAMPGVGLAAPQIGVSLQVAVVDASQARDKR--IRLANPVVIDASAIMNEYEEAS 58 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++P A ++R + V+Y+D GL AT +QH++DHL G +F+D+LS+ + Sbjct: 59 PNLPGISAKIRRPRGVKVQYLDEQGARVTRDFVGLEATSVQHQIDHLAGKMFVDNLSKTR 118 Query: 155 RDMITKKMSK 164 RDM+ +K K Sbjct: 119 RDMLLRKARK 128 >gi|170761484|ref|YP_001786248.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch Maree] gi|169408473|gb|ACA56884.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch Maree] Length = 166 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54 M KP+++ D IL R S I+K N +I+++ + + S G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D H FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKTHY-----FINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + N + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|229162908|ref|ZP_04290865.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus R309803] gi|228620790|gb|EEK77659.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus R309803] Length = 181 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + E+ + + +I+ M E GIGLAA Q Sbjct: 3 DVIREGNPILRNVAEEVSIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQ 62 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108 IG+ +++ + + D NPKII+ S + + EGCLS+ D V R Sbjct: 63 IGISKKMIAVHVTDTNGTLYSHALFNPKIISHSVERTYLPNGEGCLSVDRDVPGYVPRYT 122 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|171742883|ref|ZP_02918690.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC 27678] gi|171278497|gb|EDT46158.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC 27678] Length = 134 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 28 IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87 + +L+ ++L+ + GL+A QIGV R ++ +NP + S + Sbjct: 1 MRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNIDGKIGY-----VLNPVLEETSGE- 54 Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 EGCLS+P +R+ + VR +D + ++ G++ LQHE DHL+G +++ Sbjct: 55 QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHGIMGRMLQHETDHLDGHVYL 114 Query: 148 DHLSRLKRDMITKKMSKLVQ 167 D L + +R + M Q Sbjct: 115 DRLEKEERREAMRYMRNHRQ 134 >gi|118780782|ref|XP_310421.3| AGAP003861-PA [Anopheles gambiae str. PEST] gi|116131029|gb|EAA06035.3| AGAP003861-PA [Anopheles gambiae str. PEST] Length = 241 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+LR + I + ++++ L ++ +VM + +GLAA Q+G+ R V++ Sbjct: 53 IVQLGDPVLRVPANAIPEKELQSAEVQYLARHLTKVMRAYRCVGLAAPQLGLSLRAFVME 112 Query: 63 LQDH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 +D + +NP++ + + ++ E C S+ YRADV R Sbjct: 113 FKDELRDQYTKADYKLREMEPLPLTILLNPELKVLNYEKVIHTEACESVRGYRADVPRYR 172 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I ++ D Q + G A QHE+DHLNGI++ D ++R Sbjct: 173 EILLQGFDATGNRQELRLSGWNARIAQHEMDHLNGIVYTDIMNR 216 >gi|153938041|ref|YP_001390224.1| putative peptide deformylase [Clostridium botulinum F str. Langeland] gi|152933937|gb|ABS39435.1| putative peptide deformylase [Clostridium botulinum F str. Langeland] gi|295318318|gb|ADF98695.1| putative peptide deformylase [Clostridium botulinum F str. 230613] Length = 166 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54 M KP+++ D IL R+S+ I+K N +I+++ + + S G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISKKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D H FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKTHY-----FINPILEFIGEDTFYIWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + N + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRARDLKSFRINK 161 >gi|299534600|ref|ZP_07047932.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1] gi|298729973|gb|EFI70516.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1] Length = 185 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ P LR + ++ + + L ++ML+ + ++ GIGLAA Q Sbjct: 6 DIIREGHPTLRTKAEEVKFPLTEETKKLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108 + L R+ + L+D A + V INPKI++ S + + EGCLS+ + V R A Sbjct: 66 VNSLQRMFALHLKDEAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNIPGYVPRHA 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV++ + + + + GL A QHELDHLNGI+F D ++ Sbjct: 126 RITVKFKTIDGEEKKMRLKGLPAIAFQHELDHLNGIMFYDRINE 169 >gi|149201579|ref|ZP_01878553.1| peptide deformylase [Roseovarius sp. TM1035] gi|149144627|gb|EDM32656.1| peptide deformylase [Roseovarius sp. TM1035] Length = 149 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 2/149 (1%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 + P+ +I L + M+ VM + G+GLAA Q+G + L V+D R + Sbjct: 2 PAAPLPEITDQTRALWNEMIAVMEAMPGVGLAATQLGEMQALAVVDAS--TARGQAVRMA 59 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP+I+ S ++E +P A ++R +TVR+++ +A+ + GL AT +QH Sbjct: 60 NPEILHASVQLRPHEEASPCLPGVSAMIERPRAVTVRFLNADAEVEERDFVGLWATSVQH 119 Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++DHL G ++ D L R+KRDM+ ++ K+ Sbjct: 120 QIDHLQGRMYFDRLGRVKRDMLLRRARKI 148 >gi|270284117|ref|ZP_05965571.2| peptide deformylase [Bifidobacterium gallicum DSM 20093] gi|270277126|gb|EFA22980.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] Length = 221 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 11/158 (6%) Query: 5 PLVIFPDPILRRVSRP-IEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+V DP+LR + P + ++++ + LI+ M M G+G+AA QIG+ V+ Sbjct: 33 PMVEVGDPVLRAQAEPYVGQLSAKTLAKLIEAMRVTMLDAPGVGVAAPQIGLSLAFAVVE 92 Query: 62 -------DLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D + P V INP D + + EGCLS P ++A +R I Sbjct: 93 DHTSEEYDDDPREFAEFPFHVIINPSYDPVGDKTAKFFEGCLSFPGFQAVRERYVDIMAH 152 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D G A QHE DHL+G ++ID Sbjct: 153 WTDEQGVRHDEPLHGWPARIFQHETDHLSGEIYIDKAE 190 >gi|229019177|ref|ZP_04176010.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1273] gi|229025422|ref|ZP_04181837.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1272] gi|228735877|gb|EEL86457.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1272] gi|228742117|gb|EEL92284.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1273] Length = 184 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + E+ + + +I+ M E GIGLAA Q Sbjct: 6 EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSA 108 IG+ +++ + + D NPKII+ S + + Q EGCLS+ + V R Sbjct: 66 IGISKKMIAVHVTDTNGTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 126 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|148378868|ref|YP_001253409.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|153931530|ref|YP_001383251.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153936227|ref|YP_001386800.1| putative peptide deformylase [Clostridium botulinum A str. Hall] gi|148288352|emb|CAL82429.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|152927574|gb|ABS33074.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152932141|gb|ABS37640.1| putative peptide deformylase [Clostridium botulinum A str. Hall] Length = 166 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54 M KP+++ D IL R+S I+K N +I+++ + + S G +AA QIG Sbjct: 1 MSTKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D H FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKTHY-----FINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|297243759|ref|ZP_06927689.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] gi|298252952|ref|ZP_06976746.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] gi|296888180|gb|EFH26922.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] gi|297533316|gb|EFH72200.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] Length = 217 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 67/159 (42%), Gaps = 10/159 (6%) Query: 3 KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ V+ + + + LI M M G+GLAA QIG+ + V Sbjct: 28 ILPIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAV 87 Query: 61 IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 I+ +P INP + EGCLS+ Y+A +R I Sbjct: 88 IEDHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDIQA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + + G A QHE DHL G L+ID Sbjct: 148 TWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDRAE 186 >gi|322805193|emb|CBZ02757.1| peptide deformylase related protein [Clostridium botulinum H04402 065] Length = 166 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54 M KP+++ D IL R+S I+K N +I+++ + + S G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D H FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKTHY-----FINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|90961626|ref|YP_535542.1| peptide deformylase [Lactobacillus salivarius UCC118] gi|227890713|ref|ZP_04008518.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] gi|301299265|ref|ZP_07205551.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] gi|122993074|sp|Q1WU76|DEF_LACS1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|90820820|gb|ABD99459.1| Peptide deformylase [Lactobacillus salivarius UCC118] gi|227867651|gb|EEJ75072.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] gi|300214436|gb|ADJ78852.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus salivarius CECT 5713] gi|300853109|gb|EFK80707.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 186 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 19/168 (11%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQI 52 ++ +P LR ++ IE ++ + L +M+E + ++ G+GLAA Q+ Sbjct: 7 IIRDGNPTLRARAKAIEFPLSEEDKKLAHDMMEFLENSQNPEIAKKYHLRAGVGLAAPQV 66 Query: 53 GVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106 V R+ + + P+ V INP I++ S + EGCLS+ D V R Sbjct: 67 DVSKRMTAVLVPGIEDDDEPIFKHVLINPTILSESVQLAALGEGEGCLSVDRDIPGYVPR 126 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I +R+ D + + A +QHE+DHLNGILF DH+++ + Sbjct: 127 HDRIKLRWYDLDGNKHVERLRDYPAIVVQHEIDHLNGILFYDHINKEQ 174 >gi|291240947|ref|XP_002740376.1| PREDICTED: peptide deformylase-like [Saccoglossus kowalevskii] Length = 270 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 DP+LR + P++ + + I LI+ M+ VM +GL+A QIGV +++V++ Sbjct: 95 QVGDPVLRGKAVPVDPSDIGSNSINQLIEQMVAVMRRGQTVGLSAPQIGVGCQVIVMEYK 154 Query: 63 -----------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 +Q ++ P+ +FINP++ D EGC SI Y A V+R + Sbjct: 155 KKHMQMYSPAIIQQRGIKEFPLKIFINPQMKVLDDTKVTQLEGCESIKGYSAYVERYHAV 214 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + + Q ADG A +QHE+DHL G L+ID + Sbjct: 215 EITGLSPTGEMQSWKADGFPARIIQHEMDHLQGRLYIDIMDP 256 >gi|283783592|ref|YP_003374346.1| peptide deformylase [Gardnerella vaginalis 409-05] gi|283442075|gb|ADB14541.1| peptide deformylase [Gardnerella vaginalis 409-05] Length = 217 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 10/159 (6%) Query: 3 KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ V+ + + + LI M M G+GLAA QIG+ + V Sbjct: 28 ILPIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAV 87 Query: 61 IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 I+ +P INP + EGCLS+ Y+A +R + Sbjct: 88 IEDHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDVQA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + D + + G A QHE DHL G L+ID Sbjct: 148 TWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDRAE 186 >gi|303281244|ref|XP_003059914.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458569|gb|EEH55866.1| predicted protein [Micromonas pusilla CCMP1545] Length = 185 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 18/173 (10%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V P LR ++ + + LI ML + G+GLAA QIGV YR+ V+ Sbjct: 1 EIVQAGTPCLREIAEEVPLSSIDTAKTQELIQEMLSICR-GRGVGLAAPQIGVPYRIFVL 59 Query: 62 -------------DLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 DL+ + V INP + S+ + + EGCLS+ YR V+R Sbjct: 60 EDTEEGMSDVSKKDLEAMDRKPFAAKVVINPVVTPVSNLSAAFFEGCLSVQGYRGLVRRY 119 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + V + A G A +QHE+DHLNG+L++D + + K Sbjct: 120 LEVRVTGYGGDGSPVDFVARGWQARIVQHEMDHLNGVLYVDRMDTRTFRRVDK 172 >gi|256846996|ref|ZP_05552442.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] gi|256715660|gb|EEU30635.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] Length = 186 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 19/169 (11%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+ + + + D ++E + + G+GLAA Sbjct: 5 KDIVRDGDPVLRQRAAKVSFPLTDDEREFAHQLMEYLEVSQDPELCKKYGLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104 Q+GV ++ + + P V INP II+ S + EGCLS+ D V Sbjct: 65 QVGVSKQMASVLVPADEEGGKPQFKDVIINPVIISESVQYGVLTEGEGCLSVDKDIPGYV 124 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R IT++Y D + + I A QHE+DHL+G+LF DH+++ Sbjct: 125 PRHDRITLKYQDVDGETHQIRLKHYPAIVCQHEIDHLHGVLFYDHINKE 173 >gi|226199013|ref|ZP_03794576.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] gi|225929113|gb|EEH25137.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] Length = 131 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 6/129 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E N ++ L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP I D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQII 124 D Sbjct: 121 DQYGAKLER 129 >gi|228992712|ref|ZP_04152638.1| Peptide deformylase (Polypeptide deformylase) [Bacillus pseudomycoides DSM 12442] gi|228998756|ref|ZP_04158342.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock3-17] gi|229006272|ref|ZP_04163956.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock1-4] gi|228754918|gb|EEM04279.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock1-4] gi|228760931|gb|EEM09891.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock3-17] gi|228767044|gb|EEM15681.1| Peptide deformylase (Polypeptide deformylase) [Bacillus pseudomycoides DSM 12442] Length = 184 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + S+ + +I+ M+E GIG+AA Q Sbjct: 6 DVIREGNPILRAVAEEVPLPASEEDIRTLKEMIELVINSQHPEMVEKYNLRPGIGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108 IG+ R++ + + D NPKII+ S + + EGCLS+ + V R Sbjct: 66 IGISKRMIAVHVTDTNETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGYVPRYT 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITV+ + + + GL A QHE+DHLNG++F DH++ Sbjct: 126 RITVKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 168 >gi|52345870|ref|NP_001004979.1| peptide deformylase (mitochondrial) [Xenopus (Silurana) tropicalis] gi|49522476|gb|AAH75522.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis] gi|89268627|emb|CAJ82379.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis] Length = 239 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIE--KIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR + + +I+ D +++ M+ V+ + +GL+A QIGV R++ + Sbjct: 67 GDPVLRCTAARVPCAQISHPDTQAVVNQMVRVLRAGCCVGLSAPQIGVPLRILAVAFPQQ 126 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ P +FINP++ + EGC S+ + A V R + + Sbjct: 127 MYQAVPPEVRNAREMSPFPLQIFINPEMRIVDSRTLSFPEGCSSVQGFSAVVPRYYAVEL 186 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + M+ +H A G A +QHE+DHL+G+L+ID + Sbjct: 187 QGMNPKGEHVTWQAQGWAARIIQHEMDHLDGVLYIDKMDP 226 >gi|168178266|ref|ZP_02612930.1| putative peptide deformylase [Clostridium botulinum NCTC 2916] gi|182670881|gb|EDT82855.1| putative peptide deformylase [Clostridium botulinum NCTC 2916] Length = 166 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54 M KP+++ D IL R+S I+K N +I+++ + + S G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEKIQKSNLDKAEQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D H FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKTHY-----FINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + N + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|253577418|ref|ZP_04854734.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843218|gb|EES71250.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] Length = 193 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 +V DPILR V+ P+ + + ML+ + ++ G+GL+A Q Sbjct: 14 DIVREGDPILRVVTEPVSIPPTEEDREEMAAMLQFLKNSQDPEMSKKYKLRAGVGLSANQ 73 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQE--GCLSIPD-YRADVKRSA 108 IG+ R+ L D + P+ NPKII+ S + E GCLS+ + V R Sbjct: 74 IGLNKRMFAALLMDENGKDRPLALYNPKIISHSQAMTYLPESEGCLSVDRTVQGFVPRYE 133 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + V+ D + G A +QHE+DHLNGI+F DH++ Sbjct: 134 KVQVKAYDDEGNEIKLRFKGFDAIVMQHEIDHLNGIMFYDHINPE 178 >gi|212639721|ref|YP_002316241.1| peptide deformylase [Anoxybacillus flavithermus WK1] gi|212561201|gb|ACJ34256.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1] Length = 184 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48 K ++ P LR+V+ + + + ++ ++LE GIGLA Sbjct: 3 TMKDIIKDGHPTLRKVAEEVPLPPSEEDRRILASLLEYVKMSQDPELAKTYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPD-YRADVK 105 A QI V R++ + + D + NPKI++ S + EGCLS+ V Sbjct: 63 APQINVSKRMIAVHVTDEKGTLHSYALFNPKIVSHSVEMCYLTSGEGCLSVDKAIPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R ITV + + GL A QHE+DHLNGI+F DH+++ Sbjct: 123 RYMRITVTGTTLEDETVKLRLKGLPAIVFQHEIDHLNGIMFYDHINK 169 >gi|16803091|ref|NP_464576.1| peptide deformylase [Listeria monocytogenes EGD-e] gi|47096139|ref|ZP_00233739.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854] gi|224500304|ref|ZP_03668653.1| peptide deformylase [Listeria monocytogenes Finland 1988] gi|224502635|ref|ZP_03670942.1| peptide deformylase [Listeria monocytogenes FSL R2-561] gi|254828428|ref|ZP_05233115.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165] gi|254830180|ref|ZP_05234835.1| peptide deformylase [Listeria monocytogenes 10403S] gi|254898776|ref|ZP_05258700.1| peptide deformylase [Listeria monocytogenes J0161] gi|254911735|ref|ZP_05261747.1| peptide deformylase [Listeria monocytogenes J2818] gi|254936061|ref|ZP_05267758.1| polypeptide deformylase [Listeria monocytogenes F6900] gi|284801383|ref|YP_003413248.1| peptide deformylase [Listeria monocytogenes 08-5578] gi|284994525|ref|YP_003416293.1| peptide deformylase [Listeria monocytogenes 08-5923] gi|23396542|sp|Q8Y866|DEF_LISMO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|16410453|emb|CAC99129.1| lmo1051 [Listeria monocytogenes EGD-e] gi|47015488|gb|EAL06421.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854] gi|258600823|gb|EEW14148.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165] gi|258608650|gb|EEW21258.1| polypeptide deformylase [Listeria monocytogenes F6900] gi|284056945|gb|ADB67886.1| peptide deformylase [Listeria monocytogenes 08-5578] gi|284059992|gb|ADB70931.1| peptide deformylase [Listeria monocytogenes 08-5923] gi|293589685|gb|EFF98019.1| peptide deformylase [Listeria monocytogenes J2818] Length = 183 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L +MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108 + V R + I + D R V NPKI + S + EGCLS+ + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + G A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 170 >gi|308173421|ref|YP_003920126.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7] gi|307606285|emb|CBI42656.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7] gi|328553649|gb|AEB24141.1| peptide deformylase [Bacillus amyloliquefaciens TA208] gi|328911506|gb|AEB63102.1| formylmethionine deformylase A [Bacillus amyloliquefaciens LL3] Length = 184 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 + +V P LR ++ ++ + + + +M+E + ++ G+GLA Sbjct: 3 TMENIVRDGHPALREIAEEVQLPASDEEKQQLADMIEFVKNSQNPELAEKYELRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105 A Q V R++ + +D NPKI++ S + + EGCLS+ + V Sbjct: 63 APQTAVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPIPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R A I V+ + I G A QHE+DHLNG++F DH+ + Sbjct: 123 RYARIRVKATTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|319650481|ref|ZP_08004621.1| Def2 protein [Bacillus sp. 2_A_57_CT2] gi|317397662|gb|EFV78360.1| Def2 protein [Bacillus sp. 2_A_57_CT2] Length = 192 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 16/173 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K +V DPILR V++ + + + + M++ + ++ GIGL+ Sbjct: 11 TMKDIVREGDPILREVTKEVTVPLTEEDRGTLIAMMQYLKNSQDPAIAKKYGLRPGIGLS 70 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A QIG+ R+ + INPKII+ S F EGCLS+ D + V Sbjct: 71 ANQIGLNKRMFTAYFTNEKAEPQEYFVINPKIISHSVGVIFLPEGEGCLSVDRDVKGYVP 130 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 R I V+ + + + G+ A +QHE+DHLNGI+F D ++ + Sbjct: 131 RYERIKVKAHNLEGEEVTLRFKGIPAIIMQHEIDHLNGIMFYDRINSNDPFRV 183 >gi|327441213|dbj|BAK17578.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris StLB046] Length = 185 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 16/163 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 ++ P LR + + ++++ L D+ML+ + ++ GIGLAA Q+ Sbjct: 7 IIREGHPTLRTRAEEVTFPLSAEDRKLADDMLQYLINSQNPEIAEKYNLRGGIGLAANQV 66 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVKRSAF 109 L R+ + L+D V +NPKI++ S + + EGCLS+ V R A Sbjct: 67 NSLKRMFALHLEDENGELISFVAVNPKIVSHSVEQTYITSGEGCLSVDRAIPGYVYRYAR 126 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV++M + + + + GL A QHELDHLNG++F D + Sbjct: 127 ITVKFMTVDGEEKKMRLSGLPAIAFQHELDHLNGVMFYDRIDE 169 >gi|229134783|ref|ZP_04263591.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST196] gi|228648636|gb|EEL04663.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST196] Length = 181 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + E+ + + +I+ M E GIGLAA Q Sbjct: 3 EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 62 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSA 108 IG+ +++ + + D NPKII+ S + + Q EGCLS+ + V R Sbjct: 63 IGISKKMIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 122 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166 >gi|224476324|ref|YP_002633930.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420931|emb|CAL27745.1| putative polypeptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] Length = 162 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 7/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV LR+ + ++K + + L+ ++ + +Y T+ L+A QIGV + + Sbjct: 1 MAVKQLVPANSSKLRKPAAEVKKFDDSLKKLLLDIEDTLYDTEASALSAPQIGVSLQAAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP II SD+ EG +S PD V RS I V+ D + Sbjct: 61 IDM----EAEGLLQLINPTIIRQSDETVTDLEGSISFPDVFGTVTRSQMIVVQSYDLHGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A +A + H +D L GI F + + ++ + +++ ++ Sbjct: 117 KVELTAYDDVARMILHIVDQLKGIPFTEKM---EKQLTEEELEAYLE 160 >gi|163941714|ref|YP_001646598.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|229013180|ref|ZP_04170324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides DSM 2048] gi|229061641|ref|ZP_04198980.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH603] gi|229168715|ref|ZP_04296436.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH621] gi|163863911|gb|ABY44970.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|228614727|gb|EEK71831.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH621] gi|228717648|gb|EEL69304.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH603] gi|228748130|gb|EEL97991.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides DSM 2048] Length = 184 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + E+ + + +I+ M E GIGLAA Q Sbjct: 6 EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSA 108 IG+ +++ + + D NPKII+ S + + Q EGCLS+ + V R Sbjct: 66 IGISKKMIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 126 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|81428697|ref|YP_395697.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K] gi|123728642|sp|Q38WP3|DEF_LACSS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78610339|emb|CAI55388.1| Formylmethionine deformylase (N-formylmethionylaminoacyl-tRNA deformylase) [Lactobacillus sakei subsp. sakei 23K] Length = 185 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K ++ +P LR +++P+ ++ + L +M+ + ++ G+GLAA Sbjct: 5 KDIIREGNPTLREIAQPVSFPLSDEDRQLAADMMTFLENSQDPEIAAKYQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKN--PMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVK 105 Q+ V ++ + + V INPKII+ S D EGCLS+ + V Sbjct: 65 QVDVSKQMSAVLVPGPEGEAPILKDVIINPKIISHSVQDAALAEGEGCLSVDREVPGYVP 124 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R IT+RY D I A QHE+DHLNGILF DH+++ Sbjct: 125 RHDRITLRYQDVEGVSHKIRLKNYPAIVCQHEIDHLNGILFFDHINKE 172 >gi|226948142|ref|YP_002803233.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|226841538|gb|ACO84204.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto] Length = 166 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54 M KP+++ D L R S I+K N +I+++ + + S G +AA QIG Sbjct: 1 MSAKPILLLGDETLYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D H FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIHMHLGDKTHY-----FINPILEFIGEDTFPLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLDWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|156368959|ref|XP_001627958.1| predicted protein [Nematostella vectensis] gi|156214922|gb|EDO35895.1| predicted protein [Nematostella vectensis] Length = 192 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 24/184 (13%) Query: 6 LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 + DP+LR + ++ + D ++D +++VM S DG G+AA QIGV +++ + Sbjct: 11 IRQVGDPVLREPAEAVDVTFVHSPDFKAMVDRLVKVMRSHDGAGIAAPQIGVGLQVIAME 70 Query: 62 -----------------DLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 DL+ P+ VFINPK+ + ++E CLS+ + A Sbjct: 71 YTGKHMKKLKDNGFSDKDLKRMGIAIVPLKVFINPKLRVINPKMLAFRESCLSVEGHSAV 130 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V R + + V +D NA A G A LQHE+DHL G L++D S L + + Sbjct: 131 VPRMSEVEVTALDQNATPITWRAAGWPARILQHEVDHLKGNLYVD--SMLYKTFMNNNWQ 188 Query: 164 KLVQ 167 K + Sbjct: 189 KYAK 192 >gi|170755594|ref|YP_001780500.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra] gi|169120806|gb|ACA44642.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra] Length = 166 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54 M KP+++ D IL R+S I+K N +I+++ + S G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHNTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D H FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKTHY-----FINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|227509423|ref|ZP_03939472.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191135|gb|EEI71202.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 188 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 24/176 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 +V DP+LR+ ++ ++ +++D L +++E + + G+GLAA Q Sbjct: 6 DIVRDGDPVLRQEAKKVKFPLSADDKKLAHDLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQ--DHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRAD 103 +GV + + + D + P+ V INP I++ S EGCLS+ D Sbjct: 66 VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 125 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL---SRLKRD 156 V RSA IT++Y D + I A QHE+DHL+GILF DH+ + KRD Sbjct: 126 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181 >gi|241888581|ref|ZP_04775888.1| peptide deformylase [Gemella haemolysans ATCC 10379] gi|241864604|gb|EER68979.1| peptide deformylase [Gemella haemolysans ATCC 10379] Length = 184 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 18/182 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++I P LR + ++ I+ + ++ +LE + ++ GIGLA Sbjct: 3 TTKDIIIDPHATLRARAEEVKSPISDEDKAILRGLLEYVIASQDDEKAEKLGLKPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFS--DDFSVYQEGCLSIP-DYRAD 103 A QI V R++ + + D ++ + NPKII+ S + EGCLS+ D + Sbjct: 63 APQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSATKCYLAGGEGCLSVDKDIKGY 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V R + I V + N + + L A C QHE+DHLNG++F DH+++ + + Sbjct: 123 VPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFYDHINKENPFDVPAEYE 182 Query: 164 KL 165 KL Sbjct: 183 KL 184 >gi|116334013|ref|YP_795540.1| peptide deformylase [Lactobacillus brevis ATCC 367] gi|122269303|sp|Q03QL3|DEF_LACBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116099360|gb|ABJ64509.1| peptide deformylase [Lactobacillus brevis ATCC 367] Length = 186 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 19/168 (11%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+ + + ++ + L +++E + + G+GLAA Sbjct: 5 KDIVRDGDPVLRQEAADVTFPLSEEDQQLAKDLMEYLVVSQDPEQCKKYGLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKNP---MVFINPKIITFSD--DFSVYQEGCLSIP-DYRADV 104 Q+GV ++ + + V INP II+ S EGCLS+ D V Sbjct: 65 QVGVSKKMASVLVPPVEEDGKSPFTDVIINPVIISESVQAGALTEGEGCLSVDKDVPGFV 124 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT+RY D N + + A QHE+DHL+G LF DH+++ Sbjct: 125 PRHDRITLRYYDVNGEKHQVRLKNYPAIVCQHEIDHLHGTLFYDHINK 172 >gi|330718596|ref|ZP_08313196.1| peptide deformylase [Leuconostoc fallax KCTC 3537] Length = 188 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 20/166 (12%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +V DP+LR ++ +E ++ +I L +M++ + + G+GLAA Q+ Sbjct: 8 IVRDGDPVLRAQAKKVEFPLSDEIQQLTQDMMDYLVISQDDEQNEKYGLRPGVGLAAPQV 67 Query: 53 GVLYRLVVIDL----QDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 G ++ I + +D NP II+ S EGCLS+ D V Sbjct: 68 GYSLQMASILVPPLDEDSDEPYWQGTIFNPVIISESVKRGALNVGEGCLSVDEDVPGFVT 127 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R+ ITVRY D Q Q I A QHE+DHL+G L+ DH++ Sbjct: 128 RANRITVRYQDEQGQTQTIKLRDYPAIIFQHEIDHLHGHLYYDHIN 173 >gi|266624674|ref|ZP_06117609.1| peptide deformylase [Clostridium hathewayi DSM 13479] gi|288863453|gb|EFC95751.1| peptide deformylase [Clostridium hathewayi DSM 13479] Length = 121 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G+GLAA Q+GVL ++VVID++D N V INP I S EGCLS+P Sbjct: 1 GVGLAAPQVGVLKQIVVIDVED----GNQYVLINPVITETSGS-QTGSEGCLSVPGKSGV 55 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R + V+ DC + +GLLA + HE DHL+G LF+D + Sbjct: 56 VTRPDHVKVKAFDCEMNEFELIGEGLLARAICHECDHLSGDLFVDKVE 103 >gi|329667535|gb|AEB93483.1| peptide deformylase [Lactobacillus johnsonii DPC 6026] Length = 181 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 + +P+LR+V++P+ ++ + L D+M++ + ++ G+GLAA Q Sbjct: 3 DITRDGNPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 62 Query: 52 IGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107 +G ++ + + D VF+NPKI++ S + EGCLS+ D V R Sbjct: 63 VGESVQMAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRP 122 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +RY + + + I A HE+DHLNG LF D +++ Sbjct: 123 DKLKIRYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 167 >gi|187777978|ref|ZP_02994451.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC 15579] gi|187774906|gb|EDU38708.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC 15579] Length = 166 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54 M K +++ D IL R+S I+K N +I+++ + + S G +AA QIG Sbjct: 1 MPTKSILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L H FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGYKTHY-----FINPVLEFIGDDTFQLWDDCMSFPGLEVYVERYKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + N + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|317495963|ref|ZP_07954325.1| polypeptide deformylase [Gemella moribillum M424] gi|316913867|gb|EFV35351.1| polypeptide deformylase [Gemella moribillum M424] Length = 184 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 18/182 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++I P LR + ++ I+ + + +LE + ++ GIGLA Sbjct: 3 TTKDIIIDPHDTLRARAEEVKAPISDEDKATLRGLLEYVIASQDDEKAEKLGLKPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDD--FSVYQEGCLSIP-DYRAD 103 A QI V R++ + + D + +N + NPKII+ S + EGCLS+ + + Sbjct: 63 APQINVSKRMIAVHIPDDENPENTVSYALYNPKIISNSVAKCYLAGGEGCLSVDKEIQGY 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V R + I V + N + + L + C QHE+DHLNGI+F DH+++ + + Sbjct: 123 VPRYSKIKVVGYNENDEKITLTLTDLPSICFQHEIDHLNGIMFYDHINKENPFDVPAEYE 182 Query: 164 KL 165 KL Sbjct: 183 KL 184 >gi|52785431|ref|YP_091260.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|319646166|ref|ZP_08000396.1| peptide deformylase [Bacillus sp. BT1B_CT2] gi|52347933|gb|AAU40567.1| YkrB [Bacillus licheniformis ATCC 14580] gi|317391916|gb|EFV72713.1| peptide deformylase [Bacillus sp. BT1B_CT2] Length = 185 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 + +V P LR V+ ++ + + + + M+E + ++ G+GLA Sbjct: 4 TMENIVRDGHPALRTVAEEVQLPASEEEIKQLSEMIEFVKNSQDPEIAKKYNLRPGVGLA 63 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105 A QI + R++ + + NPKI++ S + EGCLS+ + V Sbjct: 64 APQININKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPIPGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R I V+ ++ I G A QHE+DHLNGI+F DH+ + Sbjct: 124 RYERIRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDKE 171 >gi|52080056|ref|YP_078847.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|52003267|gb|AAU23209.1| main formylmethionine deformylase [Bacillus licheniformis ATCC 14580] Length = 184 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 + +V P LR V+ ++ + + + + M+E + ++ G+GLA Sbjct: 3 TMENIVRDGHPALRTVAEEVQLPASEEEIKQLSEMIEFVKNSQDPEIAKKYNLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105 A QI + R++ + + NPKI++ S + EGCLS+ + V Sbjct: 63 APQININKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPIPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R I V+ ++ I G A QHE+DHLNGI+F DH+ + Sbjct: 123 RYERIRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDKE 170 >gi|213428282|ref|ZP_03361032.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 115 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 46/118 (38%), Positives = 80/118 (67%), Gaps = 3/118 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R+ + +R +D N Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRN 115 >gi|16800112|ref|NP_470380.1| peptide deformylase [Listeria innocua Clip11262] gi|23396547|sp|Q92CX8|DEF_LISIN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|16413502|emb|CAC96274.1| lin1043 [Listeria innocua Clip11262] gi|313619530|gb|EFR91206.1| peptide deformylase [Listeria innocua FSL S4-378] gi|313624273|gb|EFR94321.1| peptide deformylase [Listeria innocua FSL J1-023] Length = 183 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L +MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVATEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108 + V R + I + D R V NPKI + S + EGCLS+ + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + G A +QHE+DHLNG++F DH+++ Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGVMFYDHINKE 170 >gi|317129375|ref|YP_004095657.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522] gi|315474323|gb|ADU30926.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522] Length = 193 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 16/166 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ P LR+ + + N + ++ NM++ + + G+G+A Sbjct: 3 TMKDVIREGHPTLRKRAEEVNLPANEEDTAILQNMIDFLIHSQDPEIAEKYDLRPGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105 A QI V R++ + + DH + NPKII+ S + + + EGCLS+ + V Sbjct: 63 APQINVSKRMIAVRVDDHNENLIEVGLFNPKIISHSIETTHLENGEGCLSVDREVPGIVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A I V + + + GL A QHE+DHLNGI+F D + Sbjct: 123 RYARIKVEGTSIDGEKITLKLKGLPAIVFQHEIDHLNGIMFYDRIE 168 >gi|195107438|ref|XP_001998319.1| GI23899 [Drosophila mojavensis] gi|193914913|gb|EDW13780.1| GI23899 [Drosophila mojavensis] Length = 203 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 17/159 (10%) Query: 10 PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR S + + +I+ ++D M++V+ D +G+AA Q+GV R++ ++ ++ Sbjct: 20 GDPVLRIRSDEVSPERLDSKEILGIVDQMVKVLRHYDCVGVAAPQLGVPLRIIAMEFREE 79 Query: 67 AHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + VFINPKI D EGC+S+ + A V R + V Sbjct: 80 KREQFTPEVYLQRKMSTLPLSVFINPKIEIIGDMQHTQPEGCMSVRGFSARVARYDRVRV 139 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + G A QHE+DHLNGI++ID + Sbjct: 140 TGIGMLGTPDELELVGWSARIAQHEMDHLNGIIYIDRMD 178 >gi|289551005|ref|YP_003471909.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] gi|289180537|gb|ADC87782.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] Length = 162 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+ P+L+R ++ + + + + L+ ++ + +Y + L A QIG+ ++ + Sbjct: 1 MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INP II SD+ + EG +S+P +V RS I V+ D Sbjct: 61 VDM----EMEGLLQLINPTIIKVSDEQVIDLEGSISLPGIYGEVARSQMIVVQSYDVQGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A +A +QH +D +NGI F + ++ D Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKILTDK 153 >gi|168693535|ref|NP_001108286.1| peptide deformylase (mitochondrial) [Xenopus laevis] gi|163916521|gb|AAI57494.1| LOC100137680 protein [Xenopus laevis] Length = 240 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR + + + D +++ ++ V+ + +G++A Q+GV R++ + + Sbjct: 68 GDPVLRCTAACVPSAHVSHPDTQAIVNQLVRVLSAGCCVGISAPQLGVPLRILAVAFPEQ 127 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + P +FINP++ + + EGC S+ + A V R + + Sbjct: 128 MCQAVPPEVRQAREMSPFPLQIFINPEMRILNSQTLSFPEGCSSVQGFSAVVPRYYAVEI 187 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ +H A G A +QHE+DHL+G+L+ID + Sbjct: 188 SGLNPKGEHITWQAQGWAARIIQHEMDHLDGVLYIDKMDP 227 >gi|315281776|ref|ZP_07870335.1| peptide deformylase [Listeria marthii FSL S4-120] gi|313614586|gb|EFR88171.1| peptide deformylase [Listeria marthii FSL S4-120] Length = 183 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L +MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108 + V R + I + D R V NPKI + S + EGCLS+ + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINKE 170 >gi|157825792|ref|YP_001493512.1| polypeptide deformylase [Rickettsia akari str. Hartford] gi|157799750|gb|ABV75004.1| Polypeptide deformylase [Rickettsia akari str. Hartford] Length = 129 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 49/118 (41%), Positives = 80/118 (67%), Gaps = 1/118 (0%) Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 +G+L R+ +++L ++ ++ +P+V INP+I FS+ + E LS P A + RS I Sbjct: 1 MVGILKRIAIVELHEN-NKSSPIVLINPEITYFSEAKQTFIECSLSFPGIEASITRSKVI 59 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 V+Y+D + Q + A+G LAT +QH++D+LNG F+D+LS+LKRDM+ KKM K ++L Sbjct: 60 KVKYLDYDGNKQELDAEGFLATVIQHKIDYLNGKTFLDYLSKLKRDMLLKKMLKHIKL 117 >gi|145342766|ref|XP_001416260.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus CCE9901] gi|144576485|gb|ABO94553.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus CCE9901] Length = 274 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 18/172 (10%) Query: 4 KPLVIFPDPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +V P LR V+R +++I+S +I LI ML V G+GLAA Q+G R+VV Sbjct: 53 RDVVQAGAPALRDVARAVDVDEIDSTEIQELIAEMLRVCR-ARGVGLAAPQLGARRRVVV 111 Query: 61 IDLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 ++ V +NP + D + + EGCLS+ YRA V+R Sbjct: 112 LEDTTEGMSDETSEALAMKRREAFRAKVIVNPTLTPIGDASAAFFEGCLSVAGYRAVVRR 171 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + R + + A G A LQHE+DHL+G+L+ D + + Sbjct: 172 HLRVRCRGYGGDGKPVDFEAVGWEARILQHEVDHLDGVLYTDRMESRTLRRV 223 >gi|46907283|ref|YP_013672.1| peptide deformylase [Listeria monocytogenes serotype 4b str. F2365] gi|47092943|ref|ZP_00230724.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858] gi|226223669|ref|YP_002757776.1| formylmethionine deformylase [Listeria monocytogenes Clip81459] gi|254823676|ref|ZP_05228677.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194] gi|254853062|ref|ZP_05242410.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503] gi|254933401|ref|ZP_05266760.1| polypeptide deformylase [Listeria monocytogenes HPB2262] gi|254992568|ref|ZP_05274758.1| peptide deformylase [Listeria monocytogenes FSL J2-064] gi|255522443|ref|ZP_05389680.1| peptide deformylase [Listeria monocytogenes FSL J1-175] gi|300765902|ref|ZP_07075875.1| peptide deformylase [Listeria monocytogenes FSL N1-017] gi|67460118|sp|Q721B5|DEF_LISMF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|259645183|sp|C1L1X2|DEF_LISMC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|46880550|gb|AAT03849.1| peptide deformylase [Listeria monocytogenes serotype 4b str. F2365] gi|47018690|gb|EAL09442.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858] gi|225876131|emb|CAS04837.1| Putative formylmethionine deformylase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606409|gb|EEW19017.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503] gi|293584962|gb|EFF96994.1| polypeptide deformylase [Listeria monocytogenes HPB2262] gi|293592898|gb|EFG00659.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194] gi|300513364|gb|EFK40438.1| peptide deformylase [Listeria monocytogenes FSL N1-017] gi|328466823|gb|EGF37937.1| peptide deformylase [Listeria monocytogenes 1816] gi|332311460|gb|EGJ24555.1| Peptide deformylase 1 [Listeria monocytogenes str. Scott A] Length = 183 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVATEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108 + V R + I + D R V NPKI + S + EGCLS+ + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + G A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 170 >gi|312131008|ref|YP_003998348.1| peptide deformylase [Leadbetterella byssophila DSM 17132] gi|311907554|gb|ADQ17995.1| peptide deformylase [Leadbetterella byssophila DSM 17132] Length = 218 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 74/167 (44%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDP--ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M++ PD IL +S+ I + + L M + G+G+AA Q+GV Sbjct: 40 MMRITQTTDPDDLQILSAISQDISPDDPLLPLLAKRMHLAVKQAGGVGIAAPQVGVNRN- 98 Query: 59 VVIDLQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I +Q P F INPKI S+ + EGCLSIPD R +V RS I + Y Sbjct: 99 -AIWVQRFDKPGQPFEFYINPKITWKSELLQLGAEGCLSIPDTRDNVVRSYAIQLSYSQL 157 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 N H +G A QHE+DHL GILF + K K Sbjct: 158 NGAHHTEVIEGFTAVIFQHEIDHLYGILFPQRVDEQNTQEFKKSEEK 204 >gi|42518919|ref|NP_964849.1| peptide deformylase [Lactobacillus johnsonii NCC 533] gi|227889778|ref|ZP_04007583.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] gi|268319683|ref|YP_003293339.1| peptide deformylase [Lactobacillus johnsonii FI9785] gi|81703847|sp|Q74JW2|DEF_LACJO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|41583205|gb|AAS08815.1| peptide deformylase [Lactobacillus johnsonii NCC 533] gi|227849642|gb|EEJ59728.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] gi|262398058|emb|CAX67072.1| peptide deformylase [Lactobacillus johnsonii FI9785] Length = 184 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 + +P+LR+V++P+ ++ + L D+M++ + ++ G+GLAA Q Sbjct: 6 DITRDGNPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107 +G ++ + + D VF+NPKI++ S + EGCLS+ D V R Sbjct: 66 VGESVQMAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRP 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +RY + + + I A HE+DHLNG LF D +++ Sbjct: 126 DKLKIRYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|196004180|ref|XP_002111957.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens] gi|190585856|gb|EDV25924.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens] Length = 201 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 17/162 (10%) Query: 6 LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + +LR + ++ +++D+ LID M++ M S +G+AA Q+G R++ ++ Sbjct: 32 IRQAGESVLREKAAAVDPTAIVSTDVKKLIDRMIKTMRSHGDLGIAAPQLGRPLRIITLE 91 Query: 63 LQD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 + V INP++ + E C SI + A V R Sbjct: 92 ITKRHLSYLQAQYRNVVQRDTVPLQVLINPQLKVLDNHKVAEYESCSSIHNCMAKVPRYT 151 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + ADG L+ LQHE+DHL+G+L++D + Sbjct: 152 TVEVSALDRHGNRINYIADGWLSRILQHEVDHLDGLLYVDKM 193 >gi|217964856|ref|YP_002350534.1| peptide deformylase [Listeria monocytogenes HCC23] gi|290893798|ref|ZP_06556777.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071] gi|254767592|sp|B8DCF7|DEF_LISMH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|217334126|gb|ACK39920.1| peptide deformylase [Listeria monocytogenes HCC23] gi|290556625|gb|EFD90160.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071] gi|307570585|emb|CAR83764.1| polypeptide deformylase [Listeria monocytogenes L99] gi|313609509|gb|EFR85061.1| peptide deformylase [Listeria monocytogenes FSL F2-208] Length = 183 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L +MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEEMAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108 + V R + I + D R V NPKI + S + EGCLS+ + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINKE 170 >gi|154685863|ref|YP_001421024.1| peptide deformylase [Bacillus amyloliquefaciens FZB42] gi|154351714|gb|ABS73793.1| DefB [Bacillus amyloliquefaciens FZB42] Length = 184 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 + +V P LR ++ ++ + + + +M+E + ++ G+GLA Sbjct: 3 TMENIVRDGHPALREIAEEVQLPASDEEKQHLADMIEFVKNSQNPELAEKYKLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105 A Q V R++ + +D NPKI++ S + + EGCLS+ + V Sbjct: 63 APQTDVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPIPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R A I V+ + + I G A QHE+DHLNG++F DH+ + Sbjct: 123 RYARIRVKAVTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|330470474|ref|YP_004408217.1| formylmethionine deformylase [Verrucosispora maris AB-18-032] gi|328813445|gb|AEB47617.1| formylmethionine deformylase [Verrucosispora maris AB-18-032] Length = 195 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 6/153 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61 P+V P P+L R ++ + + L +++ M + G +GLAA Q+GV ++ + Sbjct: 31 VLPVVSAPHPVLSRAGAQVDPTAEETVRLAADLVATMRVSPGCVGLAAPQVGVGAQVFAV 90 Query: 62 DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MDC 117 D+ HA V N +++ + + +EGC+S+PD DVKR++ + V + Sbjct: 91 DVTGHAKAVTVHGTFVLCNARVVEAT-RWKAGREGCMSVPDLTGDVKRASRLVVEGALPG 149 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + + DG A LQHE+DH G+LF+D + Sbjct: 150 SGEQVRLVTDGFEARALQHEIDHCAGLLFLDRV 182 >gi|225387512|ref|ZP_03757276.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme DSM 15981] gi|225046442|gb|EEG56688.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme DSM 15981] Length = 155 Score = 137 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 7/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLV 59 M + + D LR+ + ++ ++ + L+D+M++ +++T+G A Q+G+L RLV Sbjct: 1 MAVRTIRTEGDEALRKRCKEVKNVDERVRALLDDMMDTLHATEGAAALAANQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID + + +NP I+ D EGCLS P A R +TV+ +D N Sbjct: 61 VID-----YCGCVLKLVNPVIVGR-DGVQECLEGCLSFPGRIATTIRPQSVTVQALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + ++ +G +A C HEL+HL+G +F+D Sbjct: 115 KEVLLTGEGEMAKCYCHELEHLDGEVFLDR 144 >gi|256842908|ref|ZP_05548396.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|293381229|ref|ZP_06627236.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|312977571|ref|ZP_07789318.1| peptide deformylase [Lactobacillus crispatus CTV-05] gi|256614328|gb|EEU19529.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|290922197|gb|EFD99192.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|310895310|gb|EFQ44377.1| peptide deformylase [Lactobacillus crispatus CTV-05] Length = 184 Score = 137 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++P+ + L D+M++ + + G+GLAA Sbjct: 5 KDIVRDGDPVLRQVAKPLTFPFSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D + V++NP+I++ S + EGCLS+ + V R Sbjct: 65 QVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|227512180|ref|ZP_03942229.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] gi|227084574|gb|EEI19886.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] Length = 185 Score = 137 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 24/176 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 +V DP+LR+ ++ ++ +++D L N++E + + G+GLAA Q Sbjct: 3 DIVRDGDPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 62 Query: 52 IGVLYRLVVIDLQ--DHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRAD 103 +GV + + + D + P+ V INP I++ S EGCLS+ D Sbjct: 63 VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL---SRLKRD 156 V RSA IT++Y D + I A QHE+DHL+GILF DH+ + KRD Sbjct: 123 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 178 >gi|329769034|ref|ZP_08260456.1| peptide deformylase 2 [Gemella sanguinis M325] gi|328839525|gb|EGF89101.1| peptide deformylase 2 [Gemella sanguinis M325] Length = 184 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 18/182 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++I P LR+ + ++ I+ + ++ ++LE + ++ GIGLA Sbjct: 3 TTKDIIIDPHETLRKRAEEVKSPISDEDKEILRSLLEYVIASQDDEKAEELGLKPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFS--DDFSVYQEGCLSIPD-YRAD 103 A QI V R++ + + D + + + NPKII+ S + EGCLS+ + + Sbjct: 63 APQINVSKRMIAVHIPDEENPEYTVSYALYNPKIISNSAAKCYLAGGEGCLSVEEEKKGY 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V R + I V D N + + L A C QHE+DHLNGI+F DH+++ + ++ Sbjct: 123 VPRYSKIKVIGYDENDEKVTLVLTDLPAICFQHEIDHLNGIMFYDHINKDNPFDVPEEYE 182 Query: 164 KL 165 +L Sbjct: 183 RL 184 >gi|227524090|ref|ZP_03954139.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] gi|227088721|gb|EEI24033.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] Length = 188 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 24/176 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 +V DP+LR+ ++ ++ +++D L N++E + + G+GLAA Q Sbjct: 6 DIVRDGDPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQ--DHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRAD 103 +GV + + + D + P+ V INP I++ S EGCLS+ D Sbjct: 66 VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 125 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL---SRLKRD 156 V RSA IT++Y D + I A QHE+DHL+GILF DH+ + KRD Sbjct: 126 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181 >gi|329767966|ref|ZP_08259477.1| peptide deformylase 2 [Gemella haemolysans M341] gi|328838451|gb|EGF88059.1| peptide deformylase 2 [Gemella haemolysans M341] Length = 184 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 18/182 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++I P LR + ++ I+ + ++ +LE + ++ GIGLA Sbjct: 3 TTKDIIIDPHATLRARAEEVKSPISDEDKAILRGLLEYVIASQDDEKAEKLGLKPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFS--DDFSVYQEGCLSIP-DYRAD 103 A QI V R++ + + D ++ + NPKII+ S + EGCLS+ + + Sbjct: 63 APQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSAAKCYLAGGEGCLSVDKEIKGY 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V R + I V + N + + L A C QHE+DHLNG++F DH+++ + + Sbjct: 123 VPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFYDHINKENPFDVPAEYE 182 Query: 164 KL 165 KL Sbjct: 183 KL 184 >gi|27467808|ref|NP_764445.1| putative polypeptide deformylase [Staphylococcus epidermidis ATCC 12228] gi|57866753|ref|YP_188364.1| polypeptide deformylase [Staphylococcus epidermidis RP62A] gi|251810645|ref|ZP_04825118.1| possible peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|282876353|ref|ZP_06285220.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|39931130|sp|Q8CPI9|DEFL_STAES RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81674925|sp|Q5HPX6|DEFL_STAEQ RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|27315352|gb|AAO04487.1|AE016746_277 putative polypeptide deformylase [Staphylococcus epidermidis ATCC 12228] gi|57637411|gb|AAW54199.1| polypeptide deformylase [Staphylococcus epidermidis RP62A] gi|251805805|gb|EES58462.1| possible peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|281295378|gb|EFA87905.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|319401492|gb|EFV89702.1| polypeptide deformylase family protein [Staphylococcus epidermidis FRI909] gi|329730010|gb|EGG66401.1| peptide deformylase [Staphylococcus epidermidis VCU144] gi|329736235|gb|EGG72507.1| peptide deformylase [Staphylococcus epidermidis VCU028] Length = 162 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + +P+ + + L++++ + +Y + ++A QIGV + + Sbjct: 1 MTVKKLVKSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + INP + + S + EG +S+P +VKRS ITV+ D N Sbjct: 61 IDM----EQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 + A +A + H +DHLNGI F Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145 >gi|325684372|gb|EGD26541.1| peptide deformylase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 207 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++ + ++ L D+M+E + ++ G+GLAA Sbjct: 28 KDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAP 87 Query: 51 QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G + + + D V++NP+II+ S + EGCLS+ V R Sbjct: 88 QVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLGEGEGCLSVDKVIDGYVPR 147 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 148 PNKVTVHYWTADGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 194 >gi|315302541|ref|ZP_07873376.1| peptide deformylase [Listeria ivanovii FSL F6-596] gi|313629103|gb|EFR97401.1| peptide deformylase [Listeria ivanovii FSL F6-596] Length = 183 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR+V+ + ++ + L MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALRKVASEVTFPLSDEEKKLGREMLEFLINSQDEEVAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108 + V R + I + D R V NPKI + S + EGCLS+ + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D + + G A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDEDGAPLKLRFKGYPAIVVQHEIDHLNGIMFYDHINKE 170 >gi|167462507|ref|ZP_02327596.1| Def2 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383825|ref|ZP_08057572.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151641|gb|EFX44714.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 195 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V DPILR V++P+ + + + ML+ + ++ G+GL+A Q Sbjct: 14 DIVREGDPILREVTQPVHVPPSEEDRETLCCMLQFLKNSQDPELAEKYQLRGGVGLSANQ 73 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSA 108 IG+ R+ LQD + + + +NP+II+ S + EGCLS+ V R Sbjct: 74 IGLNKRMFAAYLQDEQGKTHEYMVVNPQIISHSAAMTYLDQGEGCLSVDRPVPGFVPRYE 133 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V+ D N + ++ G ++ QHE+DHLNGI+F DH+ + Sbjct: 134 RIKVKAYDINGEEVVLRLKGYVSIVFQHEMDHLNGIMFYDHIDK 177 >gi|323488852|ref|ZP_08094092.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2] gi|323397550|gb|EGA90356.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2] Length = 188 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 16/164 (9%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K ++ P LR + ++ ++ + L +++LE + ++ G+G+AA Sbjct: 5 KDIIREGHPTLRERAEEVKFPLSEEDRQLGEDLLEYVVNSQDDELAEKYDLRPGVGIAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVKRS 107 Q+ R+ + D+ +V NPKI++ S + + EGCLS+ V R Sbjct: 65 QVNQAKRIFALHFDDNTGENLSLVVFNPKIVSHSVEKTYLAAGEGCLSVDRAVPGYVPRY 124 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A IT++ ++ N + + GL A QHELDHLNG++F DH+ Sbjct: 125 ARITIKALNINGEEIKMRLKGLPAIAFQHELDHLNGVMFFDHID 168 >gi|315038072|ref|YP_004031640.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] gi|312276205|gb|ADQ58845.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] Length = 184 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++P+ ++ L D+M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D + +++NP+II+ S + EGCLS+ + V R Sbjct: 65 QVGESVQMAALLVPDDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDEVINGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|228475040|ref|ZP_04059768.1| peptide deformylase [Staphylococcus hominis SK119] gi|314936623|ref|ZP_07843970.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] gi|228271025|gb|EEK12413.1| peptide deformylase [Staphylococcus hominis SK119] gi|313655242|gb|EFS18987.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] Length = 162 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+L + ++ I + ++ L+ ++ + +YS + L+A QIGV R+ + Sbjct: 1 MAIKKLVPSTHPVLFKKAKKITTFDENLKRLLLDIEDTLYSEEASALSAPQIGVSQRVAM 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INPKI T S++ + EG +++P+ +V+RS ITV D Sbjct: 61 IDM----EAEGLLQLINPKIKTESNEKIIDLEGSVNLPNVFGEVERSKMITVEANDLEGH 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A +A + H +D L+GI F + ++ + Sbjct: 117 EIELTAYDDVARMILHIIDQLDGIPFTERAIKILTEK 153 >gi|311029756|ref|ZP_07707846.1| peptide deformylase [Bacillus sp. m3-13] Length = 184 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ P LR V+ + + + + M+E + ++ G+GLA Sbjct: 3 TAKDIIKEGHPTLRVVASDVSLPPSQEDSITLQKMMEYLQNSQNPDISQQYNLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIP-DYRADVK 105 A QI V +++ + ++D + + NP+I++ S + S EGCLS+ D V Sbjct: 63 APQINVPKKMIAVHIRDESGTLHSYALFNPRIVSHSVEKSFLTSGEGCLSVDRDVPGLVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A +TV+ + + GL+A QHE+DHLNG++F DH++ Sbjct: 123 RYARVTVKATTLQGEEIKLRLKGLVAIVFQHEIDHLNGVMFYDHIN 168 >gi|310827878|ref|YP_003960235.1| peptide deformylase [Eubacterium limosum KIST612] gi|308739612|gb|ADO37272.1| peptide deformylase [Eubacterium limosum KIST612] Length = 148 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 7/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLV 59 M K PL DP+L++ + ++ ++ I +L++ M+ + T G LAA Q+G+L +LV Sbjct: 1 MPKLPLHYNDDPVLKQKCQSVQVVDDSIRSLLNAMMNTLQLTPGAAALAANQVGILLQLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID + + +NP+I+ E CLS P R + VR +D N Sbjct: 61 VIDYAGYHLK-----LVNPEILDTEGSRECM-ESCLSFPGRHIMTLRPRAVRVRALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + G +A CL HE+DHL GI+FI+ Sbjct: 115 VVIYLDVSGEMAKCLCHEIDHLRGIVFIER 144 >gi|227517325|ref|ZP_03947374.1| peptide deformylase [Enterococcus faecalis TX0104] gi|227075195|gb|EEI13158.1| peptide deformylase [Enterococcus faecalis TX0104] Length = 187 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ +P LR V+ + I + L ++ML + ++ G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101 A Q+ + R++ + + + V NPKI++ S EGCLS+ D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMDGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|325956526|ref|YP_004291938.1| peptide deformylase [Lactobacillus acidophilus 30SC] gi|325333091|gb|ADZ06999.1| peptide deformylase [Lactobacillus acidophilus 30SC] Length = 184 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++P+ ++ L D+M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D + +++NP+II+ S + EGCLS+ V R Sbjct: 65 QVGESVQMAALLVPDDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDKVINGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|331701103|ref|YP_004398062.1| peptide deformylase [Lactobacillus buchneri NRRL B-30929] gi|329128446|gb|AEB72999.1| Peptide deformylase [Lactobacillus buchneri NRRL B-30929] Length = 188 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 21/170 (12%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+ ++ ++ ++ + L +++E + + G+GLAA Sbjct: 5 KDIVRDGDPVLRKQAQKVKFPLSKEDKQLAHDLMEYLEVSQDPEQCEKLGLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDL--QDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRA 102 Q+GV + + + +D + P+ V INP I++ S EGCLS+ D Sbjct: 65 QVGVSEMMASVLVPSEDEDEKDEPVFKDVIINPVIVSNSVQRGALTEGEGCLSVDKDIPG 124 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R+A IT++Y D + + + A QHE+DHL+G LF DH+++ Sbjct: 125 YVPRAARITLKYQDVDGKEHKVRLKNYPAIVCQHEIDHLHGTLFYDHINK 174 >gi|260101766|ref|ZP_05752003.1| peptide deformylase [Lactobacillus helveticus DSM 20075] gi|260084410|gb|EEW68530.1| peptide deformylase [Lactobacillus helveticus DSM 20075] Length = 181 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 17/174 (9%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++P+ ++ L ++M+E + ++ G+GLAA Sbjct: 2 KDIVRDGDPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 61 Query: 51 QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D V++NP+I++ S + EGCLS+ V R Sbjct: 62 QVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPR 121 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 +T+ Y + + + I A HE+DHLNG LF D +++ + + + Sbjct: 122 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKE 175 >gi|313239303|emb|CBY14251.1| unnamed protein product [Oikopleura dioica] Length = 165 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 8/154 (5%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + DP LR +S+ +E + + +++ M V D +GLAA QIG+ R++++ LQ+ Sbjct: 18 LQIGDPKLREISKKVENYDD-LGKIVEEMKSVARKYDALGLAAPQIGINQRIILLTLQNG 76 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NAQHQIIY 125 + +F+NP II S EGCLS+P A V R I ++ D + Sbjct: 77 KEK----IFVNPVIIGKSSKIVPSIEGCLSVPALVASVPRHESIRLKAFDFGKGKEVTED 132 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + CLQHE+DHLNGILF+D + +++MI Sbjct: 133 FKEEDSFCLQHEIDHLNGILFLDRVE--EKEMIK 164 >gi|326331194|ref|ZP_08197489.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] gi|325951015|gb|EGD43060.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] Length = 178 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 6/153 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61 +V P +L + ++ + + L +++ M + G +GLAA Q+GV R+ + Sbjct: 14 VLDVVRAPAHVLSVPGKDVDPAAPETVQLAADLIATMRVSPGCVGLAADQVGVSARIFCV 73 Query: 62 DLQDHAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DC 117 D+ H + V N +++ S + +EGC+S+PD DVKR++ + VR Sbjct: 74 DVSTHVKTRTHHGTYVLCNAEVVEASRNEKA-REGCMSVPDLTGDVKRASRLKVRGQLPV 132 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I D A CLQHE+DH NG+LFID + Sbjct: 133 TGETVEIVTDAFEARCLQHEIDHTNGLLFIDRV 165 >gi|315658500|ref|ZP_07911372.1| peptide deformylase [Staphylococcus lugdunensis M23590] gi|315496829|gb|EFU85152.1| peptide deformylase [Staphylococcus lugdunensis M23590] Length = 162 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+ P+L+R ++ + + + + L+ ++ + +Y + L A QIG+ ++ + Sbjct: 1 MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INP II SD+ + EG +S+PD +V RS I V+ D Sbjct: 61 VDM----EMEGLLQLINPTIIKASDEQVIDLEGSISLPDIYGEVARSQMIVVQSYDVQGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + A +A +QH +D +NGI F + ++ D Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKILTDK 153 >gi|327183352|gb|AEA31799.1| peptide deformylase [Lactobacillus amylovorus GRL 1118] Length = 184 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++P+ ++ L D+M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D +++NP+II+ S + EGCLS+ + V R Sbjct: 65 QVGESVQMAALLVPNDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDEVINGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|315640077|ref|ZP_07895202.1| peptide deformylase [Enterococcus italicus DSM 15952] gi|315484205|gb|EFU74676.1| peptide deformylase [Enterococcus italicus DSM 15952] Length = 196 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVM------------YSTDGIGLAAVQI 52 ++ P LR +++ + + L +M E + + G+GLAA Q+ Sbjct: 17 IIREGHPTLREIAKEVTFPLTEQEQQLGKDMFEFLVNSQDPIKAEELHLRGGVGLAAPQV 76 Query: 53 GVLYRLVVIDLQDHAHRKNP---MVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKR 106 V R++ + + P V NPKI++ S D EGCLS+ D V R Sbjct: 77 NVSKRMIAVLVPSEQEDGEPEFAGVLYNPKIVSHSVQDACLGDGEGCLSVDRDVPGYVVR 136 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A +T+ Y D I + +QHE+DHLNG+LF D ++ Sbjct: 137 HARVTIAYQDETGAAHKIRLKNYPSIVVQHEIDHLNGVLFYDRIN 181 >gi|23098865|ref|NP_692331.1| peptide deformylase [Oceanobacillus iheyensis HTE831] gi|32363150|sp|Q8ER96|DEF_OCEIH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22777092|dbj|BAC13366.1| formylmethionine deformylase [Oceanobacillus iheyensis HTE831] Length = 183 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 16/166 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K +V P L R + +E ++ D L+++M++ + ++ G+G+A Sbjct: 3 TMKDIVREGHPSLTRSAAVVEVPLSKDDKQLLEDMMQFLKNSQDEEIAEKYELRAGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105 A Q+G+ +++ I +D + M +NPKII+ S + + EGCLS+ V Sbjct: 63 APQLGIEKQIIAIHFEDIDGKLYSMGLVNPKIISHSVEQSYLSSGEGCLSVDRPVEGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A IT++ D N Q + G A QHE+DH+NGI+F D ++ Sbjct: 123 RHARITIKATDINDQPVKLRLKGYPAIVFQHEIDHINGIMFFDRIN 168 >gi|330685497|gb|EGG97150.1| peptide deformylase [Staphylococcus epidermidis VCU121] Length = 162 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 7/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PI + + P+E + + + ++ + +Y+ +G L+A QIG+ ++ + Sbjct: 1 MSVKKLVKSEHPIFNQPANPVEHFDDQLKQTLMDIEDSLYALEGSALSANQIGINQQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INPKI S++ EG +S+P+ +V+R+ I V D N Sbjct: 61 VDM----EMEGLLQLINPKIKNQSEETITDLEGSVSLPNVFGEVERNKMIVVESNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A +A + H +D LNGI F + KR + ++M + Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTEKA---KRILSEEEMEAYFE 160 >gi|242373312|ref|ZP_04818886.1| peptide deformylase [Staphylococcus epidermidis M23864:W1] gi|242349022|gb|EES40624.1| peptide deformylase [Staphylococcus epidermidis M23864:W1] Length = 183 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ + I+ + + +M E + ++ G+GLA Sbjct: 3 TMKDIIKDGHPTLREKAKELSFPISEEDKETLRSMREFLINSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 A QI V R++ + L D + + +NPK+++ S + + EGCLS+ + V Sbjct: 63 APQINVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSHSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNG++F DH+ Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDHID 169 >gi|153955271|ref|YP_001396036.1| Def2 [Clostridium kluyveri DSM 555] gi|146348129|gb|EDK34665.1| Def2 [Clostridium kluyveri DSM 555] Length = 191 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLA 48 K +V + IL R + + + + + +M+ + ++ G+GL+ Sbjct: 11 TMKDIVREGNDILHRPTLEVMVPPSEEDKETLTSMMNFLKNSQDSILSKKYKLRGGVGLS 70 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVK 105 A QIG+ R+ V+ D +++ INPKII+ S EGCLS+ V Sbjct: 71 ANQIGLNKRMFVVYFTDEKGKEHEYTLINPKIISHSVSMIYLPPSEGCLSVDRVIDGFVP 130 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R I V+ + + I+ +G + +QHE+DHLNGI+F + +++ Sbjct: 131 RYERIKVKGFNLEGEEIILKLNGYSSIVIQHEIDHLNGIMFYERINKE 178 >gi|293366820|ref|ZP_06613496.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319121|gb|EFE59491.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] gi|329736680|gb|EGG72946.1| peptide deformylase [Staphylococcus epidermidis VCU045] Length = 162 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + +P+ + + L++++ + +Y + ++A QIGV + + Sbjct: 1 MTVKKLVNSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + INP + + S + EG +S+P +VKRS ITV+ D N Sbjct: 61 IDM----EQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 + A +A + H +DHLNGI F Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145 >gi|159463808|ref|XP_001690134.1| predicted protein [Chlamydomonas reinhardtii] gi|158284122|gb|EDP09872.1| predicted protein [Chlamydomonas reinhardtii] Length = 250 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 1/126 (0%) Query: 43 DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 DG+GLAA Q+GV RL+V + N + +NP+I+ + +EGCLS P Sbjct: 97 DGVGLAAPQVGVNVRLMVFNPMGRDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYG 156 Query: 103 DVKRSAFITVRYMDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 DV+RS I V+ +D Q + D +A QHE DHL G+LF D + + + + Sbjct: 157 DVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEFDHLQGVLFHDRMKPSVLETVRPE 216 Query: 162 MSKLVQ 167 + L + Sbjct: 217 LVALEE 222 >gi|161507335|ref|YP_001577289.1| peptide deformylase [Lactobacillus helveticus DPC 4571] gi|172048229|sp|A8YUR0|DEF_LACH4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|160348324|gb|ABX26998.1| Peptide deformylase [Lactobacillus helveticus DPC 4571] gi|328468535|gb|EGF39537.1| peptide deformylase [Lactobacillus helveticus MTCC 5463] Length = 184 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 17/174 (9%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++P+ ++ L ++M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D V++NP+I++ S + EGCLS+ V R Sbjct: 65 QVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 +T+ Y + + + I A HE+DHLNG LF D +++ + + + Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKE 178 >gi|289434312|ref|YP_003464184.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170556|emb|CBH27096.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633912|gb|EFS00628.1| peptide deformylase [Listeria seeligeri FSL N1-067] Length = 183 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVASEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108 + V R + I + D R V NPKI + S + EGCLS+ + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + G A +QHE+DHLNGI+F DH++ Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGIMFYDHINSE 170 >gi|329576776|gb|EGG58269.1| peptide deformylase [Enterococcus faecalis TX1467] Length = 131 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 4/116 (3%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M E M + DGIGLAA QIG ++ VI++ + + R INP II S+ EGC Sbjct: 1 MYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGRFE---LINPVIIEKKG-TSIDVEGC 56 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 LSIP+ V+R+ +TVRY D + + A G LA QHE+DHLNG LFID + Sbjct: 57 LSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQHEIDHLNGELFIDKM 112 >gi|313638473|gb|EFS03653.1| peptide deformylase [Listeria seeligeri FSL S4-171] Length = 183 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVASEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108 + V R + I + D R V NPKI + S + EGCLS+ + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +T+ D N + G A +QHE+DHLNGI+F DH++ Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGIMFYDHIN 168 >gi|242242497|ref|ZP_04796942.1| possible peptide deformylase [Staphylococcus epidermidis W23144] gi|242234071|gb|EES36383.1| possible peptide deformylase [Staphylococcus epidermidis W23144] Length = 162 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL ++ +P+ + + L++++ + +Y + ++A QIGV + + Sbjct: 1 MTVKKLVKSTHPILNKMIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + INP + + S + EG +S+P +VKRS ITV+ D N Sbjct: 61 IDM----EQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 + A +A + H +DHLNGI F Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145 >gi|308235345|ref|ZP_07666082.1| peptide deformylase [Gardnerella vaginalis ATCC 14018] gi|311114315|ref|YP_003985536.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] gi|310945809|gb|ADP38513.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] Length = 217 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 10/156 (6%) Query: 6 LVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +P+LR+ V+ + + + LI M M G+GLAA QIG+ + V++ Sbjct: 31 IVQAGEPVLRQRTVAYDGQLTRATLNKLISLMHSTMLDAPGVGLAAPQIGLGLAIAVVED 90 Query: 64 QDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +P INP + EGCLS+ Y+A +R I + Sbjct: 91 HVRDDADDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVAGYQAVRQRWLDIQATWQ 150 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + + G A QHE DHL G L+ID Sbjct: 151 DEDGKQHSERLHGWPARIFQHETDHLRGELYIDRAE 186 >gi|104773846|ref|YP_618826.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122983972|sp|Q1GAR4|DEF_LACDA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|103422927|emb|CAI97589.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 184 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++ + ++ L D+M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G + + + D V++NP+II+ S + EGCLS+ V R Sbjct: 65 QVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 125 PNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171 >gi|255082960|ref|XP_002504466.1| predicted protein [Micromonas sp. RCC299] gi|226519734|gb|ACO65724.1| predicted protein [Micromonas sp. RCC299] Length = 285 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 31/172 (18%) Query: 4 KPLVIFPDPILRRVSR--PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +V P+LR+++ P+++I+S I LI M+ +M + G+GLAA QIGV YR+ V Sbjct: 65 REIVQAGTPVLRQMAEEIPLDRIDSATIQELIQEMISIMRNR-GVGLAAPQIGVPYRIFV 123 Query: 61 IDLQDHA-----------HRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 ++ + + P V INP + S+ + EGCLS Sbjct: 124 MEDTEEGMSDVSKDDLVAQERAPFPAKVIINPTVTPVSNQSCAFFEGCLS---------- 173 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + VR + + A G A QHE+DHL+G+L++D + + Sbjct: 174 ---VRVRGYGGDGKPVDFVAKGWQARIAQHEMDHLDGVLYVDRMDSRTFRRV 222 >gi|319892089|ref|YP_004148964.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] gi|317161785|gb|ADV05328.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] gi|323464802|gb|ADX76955.1| peptide deformylase 2 [Staphylococcus pseudintermedius ED99] Length = 183 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR+ ++ +E + + + +M + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLRQRAKEVEFPLTEEERQTLLDMQTFLKNSQDPEIAEKYQLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 A QI V R+ + L D +NPKI++ S D + EGCLS+ D V Sbjct: 63 APQINVPKRMFAVYLPDDGEGHSYDFAIVNPKIVSHSVQDAYLPTGEGCLSVDEDVPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R I ++ D + + G A +QHELDHLNG+LF DH+ Sbjct: 123 HRHYRIKLKGYDIDGNEINLRLKGYPAIVVQHELDHLNGVLFYDHID 169 >gi|300811352|ref|ZP_07091849.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123463|ref|YP_004033722.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300497716|gb|EFK32741.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280026|gb|ADQ60745.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 184 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++ + ++ L D+M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G + + + D V++NP+II+ S + EGCLS+ V R Sbjct: 65 QVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLGEGEGCLSVDKVIDGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 125 PNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171 >gi|116872445|ref|YP_849226.1| peptide deformylase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466166|sp|A0AHG3|DEF_LISW6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116741323|emb|CAK20445.1| polypeptide deformylase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 183 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L +MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVASEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108 + V R++ I + D R V NPKI + S + EGCLS+ + V RS Sbjct: 66 LAVTKRILAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDENGIPLKLRFKDYPAIVVQHEIDHLNGIMFYDHINKE 170 >gi|325125510|gb|ADY84840.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 184 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++ + ++ L D+M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHHLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G + + + D V++NP+II+ S + EGCLS+ V R Sbjct: 65 QVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 125 PNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171 >gi|319649756|ref|ZP_08003909.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] gi|317398510|gb|EFV79195.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] Length = 183 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 17/165 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K ++ P LR+++ + +++ + ++ M+E + ++ GIGLAA Sbjct: 5 KDIIRDGHPTLRKIAAEVNMPPSAEEIQILKEMMEYVKNSQDPELSAKYGLRAGIGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVKRS 107 QI V R++ + + + NPKII+ S + EGCLS+ + V R Sbjct: 65 QINVSRRMIAVHVT-YNQDLYSYALFNPKIISHSVQLSYLAEGEGCLSVDESIPGFVPRY 123 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A +TV+ D + GL A QHE+DHLNGI+F DH+++ Sbjct: 124 AKVTVKGTDLQGNEVKLKLKGLPAIVFQHEIDHLNGIMFYDHINK 168 >gi|227877349|ref|ZP_03995420.1| peptide deformylase [Lactobacillus crispatus JV-V01] gi|256848717|ref|ZP_05554151.1| peptide deformylase [Lactobacillus crispatus MV-1A-US] gi|295692713|ref|YP_003601323.1| peptide deformylase [Lactobacillus crispatus ST1] gi|227863017|gb|EEJ70465.1| peptide deformylase [Lactobacillus crispatus JV-V01] gi|256714256|gb|EEU29243.1| peptide deformylase [Lactobacillus crispatus MV-1A-US] gi|295030819|emb|CBL50298.1| Peptide deformylase [Lactobacillus crispatus ST1] Length = 184 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++P+ ++ L D+M++ + + G+GLAA Sbjct: 5 KDIVRDGDPVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D + V++NP+I++ S + EGCLS+ + V R Sbjct: 65 QVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|315148893|gb|EFT92909.1| peptide deformylase [Enterococcus faecalis TX4244] Length = 187 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ +P LR V+ + I + L ++ML + ++ G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101 A Q+ + R++ + + + V NPKI++ S EGCLS+ D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDWDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|205373016|ref|ZP_03225822.1| peptide deformylase [Bacillus coahuilensis m4-4] Length = 184 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ P LR V++ ++ + + + ++LE + ++ GIG+AA Q Sbjct: 6 DIIREGHPTLREVAKEVKIPPSLEDQETLKSLLEYVKNSQDPEKAATFNLRPGIGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108 I V R++ I + + NP +I+ S + + EGCLS+ D V R Sbjct: 66 IDVSKRMLAIRVPNEKGELIEEALFNPIVISHSVEQAYLTSGEGCLSVDRDVPGFVPRYR 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +TV+ D N Q + + GL A QHE+DHLNGI+F DH++ Sbjct: 126 KVTVKGFDINGQLKTLKLRGLPAIVFQHEIDHLNGIMFYDHIN 168 >gi|70726862|ref|YP_253776.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435] gi|68447586|dbj|BAE05170.1| formylmethionine deformylase [Staphylococcus haemolyticus JCSC1435] Length = 183 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR + + ++ + N + M + + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLRAKAEDVSLPLSDEDKNTLKEMRQFLINSQDDDIAKKYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADV 104 A QI V R++ + L D + + +NPKI++ S + EGCLS+ + V Sbjct: 63 APQINVSKRMIAVYLPDDGNGKAYDYMLVNPKIMSHSVQRAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ +D + + G A QHE+DHLNG++F D++ Sbjct: 123 HRHFRVTIKALDIDGNEVKLRLKGYPAIIFQHEIDHLNGVMFYDYID 169 >gi|227893361|ref|ZP_04011166.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] gi|227864776|gb|EEJ72197.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] Length = 184 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++P+ ++ L +M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRQVAKPLTFPLSDHYKKLAKDMMEYLINSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D + ++NP+II+ S + EGCLS+ V R Sbjct: 65 QVGESVQMAALLVPDDEGKIIFKETYVNPEIISESVRQACLSEGEGCLSVDKVINGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|257420477|ref|ZP_05597467.1| polypeptide deformylase [Enterococcus faecalis X98] gi|257162301|gb|EEU92261.1| polypeptide deformylase [Enterococcus faecalis X98] gi|315154772|gb|EFT98788.1| peptide deformylase [Enterococcus faecalis TX0043] Length = 187 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ +P LR V+ + I + L ++ML + ++ G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101 A Q+ + R++ + + + V NPKI++ S EGCLS+ D Sbjct: 63 APQLDISKRIIAVHVPSNDPENEKPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|15596319|ref|NP_249813.1| peptide deformylase [Pseudomonas aeruginosa PAO1] gi|9947041|gb|AAG04511.1|AE004542_7 probable peptide deformylase [Pseudomonas aeruginosa PAO1] Length = 147 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 8/125 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R+++P+ + ++ LID+M E M+ G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + + P + +NP++ D+ EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAPAVPPTILLNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120 Query: 114 YMDCN 118 +D Sbjct: 121 GLDPQ 125 >gi|262199337|ref|YP_003270546.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365] gi|262082684|gb|ACY18653.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365] Length = 171 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVL 55 M + ++ +P L + S+ +E + LI ++ + + + G G+AA QIGV Sbjct: 1 MPARTILQLGNPDLWQSSQRVESPAAA-QALIQDLADTLAAFREKNGFGRGIAAPQIGVH 59 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ +++ INP+++ S++ V + C S+P V R+A + V + Sbjct: 60 QRLIFVNVPGGFSGP----LINPQVVWSSEEQMVLWDDCFSLPGLMVRVARAAQVRVSFQ 115 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + + + + I AD L+ LQHE+DHL+GIL + Sbjct: 116 NQHGEARSIEADRALSELLQHEIDHLDGILAVQR 149 >gi|239636405|ref|ZP_04677407.1| peptide deformylase [Staphylococcus warneri L37603] gi|239597760|gb|EEQ80255.1| peptide deformylase [Staphylococcus warneri L37603] Length = 183 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ + ++++ + M E + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLREKAQELSFPLSNEDKETLKAMREFLINSQDDDIAKKYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 A QI V R++ + L D + + +NPK++++S + + EGCLS+ + V Sbjct: 63 APQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T++ D + + G A QHE+DHLNGI+F DH+ Sbjct: 123 HRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYDHIDD 170 >gi|73663007|ref|YP_301788.1| peptide deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495522|dbj|BAE18843.1| formylmethionine deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 183 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ + ++ + N + M E + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLREKAKDVTLPLSEEDRNTLLAMREFLINSQDDEIATKYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 A QI + +++ + L D + ++ +NPKI++ S + + EGCLS+ + V Sbjct: 63 APQINISKKMIAVYLPDDGNGKSYDLMLVNPKIMSHSIQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R ITV+ D + + + G A +QHE+DH+NGI+F DH+ Sbjct: 123 HRKNRITVKATDIDGKEVKLRLKGYPAVVVQHEIDHINGIMFYDHIDP 170 >gi|313157220|gb|EFR56650.1| peptide deformylase [Alistipes sp. HGB5] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 7/145 (4%) Query: 14 LRRVSRP--IEKINSDIMNLIDN-MLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAH 68 LRR + P E++ S+ L+ ML + + +G+G+AA Q+GV RL+ + D Sbjct: 84 LRRKAAPLGAEELRSEYFRLLKQGMLLTVRDPADEGVGIAAPQVGVSRRLIAVQRFDKPG 143 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQHQIIYAD 127 ++NP+I+ S + +EGCLS+P+ V R+ I +RY+D + + Sbjct: 144 EPF-ECYVNPEIVGRSAARTAGREGCLSVPETSGTVLRADRIVLRYLDETTMRPVTDTVE 202 Query: 128 GLLATCLQHELDHLNGILFIDHLSR 152 G A QHE+DHL+G+LFID + R Sbjct: 203 GFTAVIFQHEIDHLDGVLFIDRMQR 227 >gi|325195568|emb|CCA28422.1| peptide deformylase putative [Albugo laibachii Nc14] Length = 98 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 48/96 (50%), Positives = 66/96 (68%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 MVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + + A+GLLA Sbjct: 1 MVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAI 60 Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 61 CIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 96 >gi|219855695|ref|YP_002472817.1| hypothetical protein CKR_2352 [Clostridium kluyveri NBRC 12016] gi|219569419|dbj|BAH07403.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 180 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 16/166 (9%) Query: 4 KPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K +V + IL R + + + + + +M+ + ++ G+GL+A Sbjct: 2 KDIVREGNDILHRPTLEVMVPPSEEDKETLTSMMNFLKNSQDSILSKKYKLRGGVGLSAN 61 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRS 107 QIG+ R+ V+ D +++ INPKII+ S EGCLS+ V R Sbjct: 62 QIGLNKRMFVVYFTDEKGKEHEYTLINPKIISHSVSMIYLPPSEGCLSVDRVIDGFVPRY 121 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I V+ + + I+ +G + +QHE+DHLNGI+F + +++ Sbjct: 122 ERIKVKGFNLEGEEIILKLNGYSSIVIQHEIDHLNGIMFYERINKE 167 >gi|228474307|ref|ZP_04059042.1| peptide deformylase [Staphylococcus hominis SK119] gi|314936719|ref|ZP_07844066.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] gi|228271666|gb|EEK13013.1| peptide deformylase [Staphylococcus hominis SK119] gi|313655338|gb|EFS19083.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] Length = 183 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ + ++ + N + +M E + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLREKAKDVNLPLSEEDKNTLRDMREFLINSQDDEIAKKYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADV 104 A QI + +++ + L D + + +NPK+I+ S + EGCLS+ + V Sbjct: 63 APQINISKKMIAVYLPDDGEGKSYDYMLVNPKVISHSVQHAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R T++ D + + G A QHE+DHLNGI+F D++ + Sbjct: 123 HRHYRTTIKAYDIDGNEVKLRLKGYPAIVFQHEIDHLNGIMFYDYIDK 170 >gi|169404548|pdb|2OS1|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E. Faecalis And S. Pyogenes Length = 188 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ +P LR V+ + I + L ++ML + ++ G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101 A Q+ + R++ + + + V NPKI++ S EGCLS+ D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|227431846|ref|ZP_03913870.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352388|gb|EEJ42590.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 192 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 26/177 (14%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------D 43 M + + DP+LR+ + + ++ + L +M+E + + Sbjct: 1 MTIRFTMDKITRDGDPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRP 60 Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQ--EGCL 95 G+GLAA Q+G R+ I + NP II+ S EGCL Sbjct: 61 GVGLAAPQVGYSLRMSSILIPALDPEDTTDEPYFKGTIFNPVIISESVKRGALNVGEGCL 120 Query: 96 SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 S+ D V R+ ITVRY D + Q I A QHE+DHL+G L+ DH++ Sbjct: 121 SVDEDVPGFVPRAYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177 >gi|29377524|ref|NP_816678.1| peptide deformylase [Enterococcus faecalis V583] gi|227554489|ref|ZP_03984536.1| peptide deformylase [Enterococcus faecalis HH22] gi|229547504|ref|ZP_04436229.1| peptide deformylase [Enterococcus faecalis TX1322] gi|255970735|ref|ZP_05421321.1| peptide deformylase [Enterococcus faecalis T1] gi|255974309|ref|ZP_05424895.1| peptide deformylase [Enterococcus faecalis T2] gi|256618174|ref|ZP_05475020.1| peptide deformylase [Enterococcus faecalis ATCC 4200] gi|256761103|ref|ZP_05501683.1| peptide deformylase [Enterococcus faecalis T3] gi|256854744|ref|ZP_05560108.1| polypeptide deformylase [Enterococcus faecalis T8] gi|256958348|ref|ZP_05562519.1| peptide deformylase [Enterococcus faecalis DS5] gi|256960417|ref|ZP_05564588.1| peptide deformylase [Enterococcus faecalis Merz96] gi|256962908|ref|ZP_05567079.1| peptide deformylase [Enterococcus faecalis HIP11704] gi|257078342|ref|ZP_05572703.1| peptide deformylase [Enterococcus faecalis JH1] gi|257080527|ref|ZP_05574888.1| peptide deformylase [Enterococcus faecalis E1Sol] gi|257083262|ref|ZP_05577623.1| peptide deformylase [Enterococcus faecalis Fly1] gi|257088182|ref|ZP_05582543.1| peptide deformylase [Enterococcus faecalis D6] gi|257417200|ref|ZP_05594194.1| peptide deformylase [Enterococcus faecalis AR01/DG] gi|257417917|ref|ZP_05594911.1| peptide deformylase [Enterococcus faecalis T11] gi|293383918|ref|ZP_06629820.1| peptide deformylase [Enterococcus faecalis R712] gi|293388312|ref|ZP_06632826.1| peptide deformylase [Enterococcus faecalis S613] gi|294780198|ref|ZP_06745570.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|300861505|ref|ZP_07107589.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|307270427|ref|ZP_07551728.1| peptide deformylase [Enterococcus faecalis TX4248] gi|307273932|ref|ZP_07555144.1| peptide deformylase [Enterococcus faecalis TX0855] gi|307276707|ref|ZP_07557824.1| peptide deformylase [Enterococcus faecalis TX2134] gi|307278203|ref|ZP_07559285.1| peptide deformylase [Enterococcus faecalis TX0860] gi|307286413|ref|ZP_07566519.1| peptide deformylase [Enterococcus faecalis TX0109] gi|307292087|ref|ZP_07571954.1| peptide deformylase [Enterococcus faecalis TX0411] gi|312901914|ref|ZP_07761177.1| peptide deformylase [Enterococcus faecalis TX0470] gi|312906741|ref|ZP_07765741.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|312910721|ref|ZP_07769560.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|312953167|ref|ZP_07772014.1| peptide deformylase [Enterococcus faecalis TX0102] gi|39930870|sp|Q82ZJ0|DEF_ENTFA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|29344991|gb|AAO82748.1| polypeptide deformylase [Enterococcus faecalis V583] gi|227176399|gb|EEI57371.1| peptide deformylase [Enterococcus faecalis HH22] gi|229307346|gb|EEN73333.1| peptide deformylase [Enterococcus faecalis TX1322] gi|255961753|gb|EET94229.1| peptide deformylase [Enterococcus faecalis T1] gi|255967181|gb|EET97803.1| peptide deformylase [Enterococcus faecalis T2] gi|256597701|gb|EEU16877.1| peptide deformylase [Enterococcus faecalis ATCC 4200] gi|256682354|gb|EEU22049.1| peptide deformylase [Enterococcus faecalis T3] gi|256710304|gb|EEU25348.1| polypeptide deformylase [Enterococcus faecalis T8] gi|256948844|gb|EEU65476.1| peptide deformylase [Enterococcus faecalis DS5] gi|256950913|gb|EEU67545.1| peptide deformylase [Enterococcus faecalis Merz96] gi|256953404|gb|EEU70036.1| peptide deformylase [Enterococcus faecalis HIP11704] gi|256986372|gb|EEU73674.1| peptide deformylase [Enterococcus faecalis JH1] gi|256988557|gb|EEU75859.1| peptide deformylase [Enterococcus faecalis E1Sol] gi|256991292|gb|EEU78594.1| peptide deformylase [Enterococcus faecalis Fly1] gi|256996212|gb|EEU83514.1| peptide deformylase [Enterococcus faecalis D6] gi|257159028|gb|EEU88988.1| peptide deformylase [Enterococcus faecalis ARO1/DG] gi|257159745|gb|EEU89705.1| peptide deformylase [Enterococcus faecalis T11] gi|291078745|gb|EFE16109.1| peptide deformylase [Enterococcus faecalis R712] gi|291082322|gb|EFE19285.1| peptide deformylase [Enterococcus faecalis S613] gi|294452741|gb|EFG21171.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|295114395|emb|CBL33032.1| peptide deformylase [Enterococcus sp. 7L76] gi|300848966|gb|EFK76719.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|306496869|gb|EFM66419.1| peptide deformylase [Enterococcus faecalis TX0411] gi|306502426|gb|EFM71699.1| peptide deformylase [Enterococcus faecalis TX0109] gi|306505192|gb|EFM74380.1| peptide deformylase [Enterococcus faecalis TX0860] gi|306506606|gb|EFM75759.1| peptide deformylase [Enterococcus faecalis TX2134] gi|306509411|gb|EFM78469.1| peptide deformylase [Enterococcus faecalis TX0855] gi|306513205|gb|EFM81836.1| peptide deformylase [Enterococcus faecalis TX4248] gi|310627389|gb|EFQ10672.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|310628910|gb|EFQ12193.1| peptide deformylase [Enterococcus faecalis TX0102] gi|311288984|gb|EFQ67540.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|311290981|gb|EFQ69537.1| peptide deformylase [Enterococcus faecalis TX0470] gi|315027683|gb|EFT39615.1| peptide deformylase [Enterococcus faecalis TX2137] gi|315028233|gb|EFT40165.1| peptide deformylase [Enterococcus faecalis TX4000] gi|315031247|gb|EFT43179.1| peptide deformylase [Enterococcus faecalis TX0017] gi|315036534|gb|EFT48466.1| peptide deformylase [Enterococcus faecalis TX0027] gi|315143298|gb|EFT87314.1| peptide deformylase [Enterococcus faecalis TX2141] gi|315149069|gb|EFT93085.1| peptide deformylase [Enterococcus faecalis TX0012] gi|315152916|gb|EFT96932.1| peptide deformylase [Enterococcus faecalis TX0031] gi|315157489|gb|EFU01506.1| peptide deformylase [Enterococcus faecalis TX0312] gi|315164500|gb|EFU08517.1| peptide deformylase [Enterococcus faecalis TX1302] gi|315167177|gb|EFU11194.1| peptide deformylase [Enterococcus faecalis TX1341] gi|315171029|gb|EFU15046.1| peptide deformylase [Enterococcus faecalis TX1342] gi|315173457|gb|EFU17474.1| peptide deformylase [Enterococcus faecalis TX1346] gi|315573357|gb|EFU85548.1| peptide deformylase [Enterococcus faecalis TX0309B] gi|315581211|gb|EFU93402.1| peptide deformylase [Enterococcus faecalis TX0309A] gi|323479000|gb|ADX78439.1| peptide deformylase [Enterococcus faecalis 62] gi|327536189|gb|AEA95023.1| peptide deformylase [Enterococcus faecalis OG1RF] Length = 187 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ +P LR V+ + I + L ++ML + ++ G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101 A Q+ + R++ + + + V NPKI++ S EGCLS+ D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|332638588|ref|ZP_08417451.1| peptide deformylase [Weissella cibaria KACC 11862] Length = 195 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 28/177 (15%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K +V DP+LR+ + + ++ ++ NM+E + + G+GLAA Sbjct: 5 KDIVRDGDPVLRQQAAKVTFPLSDEVKEATKNMMEYLVVSQNEEENEKCGLRPGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRKN------------PMVFINPKIITFSDDFSV--YQEGCLS 96 Q+G+ + I + D NP I S + EGCLS Sbjct: 65 QVGISQQFSSILIPDEDVDDTDIDEDAAPTYFFKGTIYNPVITRQSVKQTALSMGEGCLS 124 Query: 97 IP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + D V+R+ ITV+Y D N Q + +G A QHE+DHL+G L+ DH+S+ Sbjct: 125 VDEDIPGYVERAYRITVKYQDENGDAQELKLEGYPAIVFQHEIDHLHGTLYYDHISK 181 >gi|145596781|ref|YP_001161078.1| formylmethionine deformylase [Salinispora tropica CNB-440] gi|145306118|gb|ABP56700.1| formylmethionine deformylase [Salinispora tropica CNB-440] Length = 187 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 6/153 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61 +P+V P +L R R ++ + L +++ M + G +GLAA QIGV R+ + Sbjct: 23 VRPVVSAPAAVLSRAGRDVDPTAEQTVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAV 82 Query: 62 DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MDC 117 D+ H V N ++ S + +EGC+S+PD DVKR+ + V + Sbjct: 83 DVTGHPKASTGHGAFVLCNAVVVEAS-RWKAGREGCMSVPDLTGDVKRAGRLVVEGDLPG 141 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + D A LQHE+DH G+LF+D + Sbjct: 142 TGKTVRLVTDAFEARALQHEIDHCAGLLFLDRV 174 >gi|227535207|ref|ZP_03965256.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187091|gb|EEI67158.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 181 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 17/167 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50 K + +LR ++P+ ++ + L +M+ E + G+GLAA Sbjct: 2 KDITRDGAKVLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAP 61 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106 Q+G + + + D V INP+II+ S + EGCLS+ D V R Sbjct: 62 QVGQSKAMAAVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVR 121 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + IT+ Y + +H+ I A QHE+DHLNG+LF DH+++ Sbjct: 122 ADRITISYQNEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINKE 168 >gi|229548080|ref|ZP_04436805.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|257091309|ref|ZP_05585670.1| peptide deformylase [Enterococcus faecalis CH188] gi|312905368|ref|ZP_07764483.1| peptide deformylase [Enterococcus faecalis TX0635] gi|229306766|gb|EEN72762.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|257000121|gb|EEU86641.1| peptide deformylase [Enterococcus faecalis CH188] gi|310631392|gb|EFQ14675.1| peptide deformylase [Enterococcus faecalis TX0635] gi|315162546|gb|EFU06563.1| peptide deformylase [Enterococcus faecalis TX0645] gi|315578554|gb|EFU90745.1| peptide deformylase [Enterococcus faecalis TX0630] Length = 187 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ +P LR V+ + I + L ++ML + ++ G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITKEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101 A Q+ + R++ + + + V NPKI++ S EGCLS+ D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|296111965|ref|YP_003622347.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154] gi|295833497|gb|ADG41378.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154] Length = 192 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 26/177 (14%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43 M + + DP+LR++++P+ ++ + L +M+ E Sbjct: 1 MTIRFTMDKITRDGDPVLRQIAQPVPFPLSEEHAQLAKDMMTYLVISQDATQNETYGLRP 60 Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQ--EGCL 95 G+GLAA Q+G ++ + + ++ NP II+ S EGCL Sbjct: 61 GVGLAAPQVGYSLQMAAVLVPSLDPHESDDTPYFKGTIFNPTIISESVKRGALDVGEGCL 120 Query: 96 SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 S+ D V R+ +TVRY D +II A QHE+DHL+G L+ DH+ Sbjct: 121 SVDEDVPGFVPRANRVTVRYQDEIGDTKIIKLRDYPAIVFQHEIDHLHGHLYYDHID 177 >gi|116618440|ref|YP_818811.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097287|gb|ABJ62438.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 192 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 26/177 (14%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------D 43 M + + DP+LR+ + + ++ + L +M+E + + Sbjct: 1 MTIRFTMDKITRDGDPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRP 60 Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQ--EGCL 95 G+GLAA Q+G R+ I + NP II+ S EGCL Sbjct: 61 GVGLAAPQVGYSLRMSSILIPALDPEDTIDEPYFKGTIFNPVIISESVKRGALNVGEGCL 120 Query: 96 SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 S+ D V R+ ITVRY D + Q I A QHE+DHL+G L+ DH++ Sbjct: 121 SVDEDVPGFVPRAYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177 >gi|116494793|ref|YP_806527.1| peptide deformylase [Lactobacillus casei ATCC 334] gi|191638306|ref|YP_001987472.1| peptide deformylase [Lactobacillus casei BL23] gi|239631609|ref|ZP_04674640.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066358|ref|YP_003788381.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang] gi|122263789|sp|Q039N7|DEF_LACC3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238693032|sp|B3WE13|DEF_LACCB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116104943|gb|ABJ70085.1| peptide deformylase [Lactobacillus casei ATCC 334] gi|190712608|emb|CAQ66614.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus casei BL23] gi|239526074|gb|EEQ65075.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438765|gb|ADK18531.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang] gi|327382333|gb|AEA53809.1| Peptide deformylase [Lactobacillus casei LC2W] gi|327385534|gb|AEA57008.1| Peptide deformylase [Lactobacillus casei BD-II] Length = 184 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 17/167 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50 K + +LR ++P+ ++ + L +M+ E + G+GLAA Sbjct: 5 KDITRDGAKVLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106 Q+G + + + D V INP+II+ S + EGCLS+ D V R Sbjct: 65 QVGQSKAMAAVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + IT+ Y + +H+ I A QHE+DHLNG+LF DH+++ Sbjct: 125 ADRITISYQNEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINKE 171 >gi|330833559|ref|YP_004402384.1| polypeptide deformylase [Streptococcus suis ST3] gi|329307782|gb|AEB82198.1| polypeptide deformylase [Streptococcus suis ST3] Length = 204 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ P LR+V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFSDDFSVYQ--EGCLSIP-D 99 I V R++ + + NP V NPKI+ S + + EGCLS+ + Sbjct: 78 IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + V R A +TV YMD N + I G A +QHE+DHLNGI+F D + + Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGIMFYDRIDPEHPFAVK 197 Query: 160 KKM 162 + M Sbjct: 198 EGM 200 >gi|332518959|ref|ZP_08395426.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4] gi|332044807|gb|EGI81000.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4] Length = 215 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 8/147 (5%) Query: 13 ILRRVSRPIEKINSD--IMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAH 68 +LR S ++ ++D + I + + + G+G+AA Q+GVL ++ + D Sbjct: 65 LLRSKSAYVKPDSTDVVLNTFIKRLYATVRDSISLGVGIAAPQVGVLKNVIWVQRFDKDE 124 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV--KRSAFITVRYMDCNAQHQIIYA 126 V++NPKII++S + +EGCLSIP+ R DV RS + + Y N +H I Sbjct: 125 FPF-EVYLNPKIISYSQEKQTRKEGCLSIPN-RTDVLNNRSKIVKIEYDKINGEHIIETI 182 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRL 153 A QHE+DHLNGIL++DHL + Sbjct: 183 TDFTAIIFQHEIDHLNGILYLDHLEKE 209 >gi|224476206|ref|YP_002633812.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420813|emb|CAL27627.1| type II peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] Length = 184 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 17/169 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ +E ++++ N I M E + ++ G+G+A Sbjct: 3 TMKDIIRDGHPTLREKAKEVEFPLSNEDRNKIQEMHEFLVNSQDDEIAKKYGLRSGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 A Q+ + R++ + L D + ++ INPKI+++S + + EGCLS+ D V Sbjct: 63 APQLNISKRMLAVHLPDDGEGKSYELMLINPKIVSYSVQEAYLPTGEGCLSVDEDIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R +TV+ D + + G +A +QHE+DHL+GI+F DH+ + Sbjct: 123 HRHNRVTVKAKDIDGNDINLRLKGYIAIVVQHEIDHLDGIMFYDHIDKE 171 >gi|301103913|ref|XP_002901042.1| peptide deformylase, putative [Phytophthora infestans T30-4] gi|262101380|gb|EEY59432.1| peptide deformylase, putative [Phytophthora infestans T30-4] Length = 210 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 6 LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61 LV + LRRVS+ + + + L++++ + + G+G+AA Q+ R+ ++ Sbjct: 3 LVFLGNSALRRVSKSVADVRAPAVRRLLEDLDKEVRLEAGVGIAAPQLAHNLRMFLMIKD 62 Query: 62 --DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + +D + +NPKI+ S EGCLS+P Y+ ++R+ I V+Y D Sbjct: 63 MPENEDDLSKLEYQEVLNPKIVAMSKSSKRDFEGCLSVPGYQGIIERAEEIRVQYQDAEG 122 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A QHELDHLNG++++D L Sbjct: 123 RKIQETLTDFPARIFQHELDHLNGVMYLDRLE 154 >gi|91092264|ref|XP_967363.1| PREDICTED: similar to N-formylmethionylaminoacyl-tRNA deformylase, putative [Tribolium castaneum] gi|270001218|gb|EEZ97665.1| hypothetical protein TcasGA2_TC016210 [Tribolium castaneum] Length = 223 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 19/165 (11%) Query: 6 LVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP LR VS + + +I LI+ M VM + + +GL+A Q+GV +L ++ Sbjct: 35 VVQIGDPTLRTVS-DVIPRDLIKLPEIKFLINRMKNVMKNHNSVGLSAPQVGVPLQLFLV 93 Query: 62 DLQ-----DHAHRKNPM---------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + +++ ++ + V INP+I + E C S+ + A+V R Sbjct: 94 ECNAKHLNEYSPQEQKVKEMKVVPFKVVINPQIKITDYTKLTFVESCASVKGFHAEVPRY 153 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + D Q + G A +QHE+DHLNG ++ D + R Sbjct: 154 KSLKLEAFDEENQKFEMELTGWPARIVQHEVDHLNGKIYTDIMDR 198 >gi|222150958|ref|YP_002560111.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402] gi|254767593|sp|B9EB04|DEF_MACCJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|222120080|dbj|BAH17415.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402] Length = 184 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 17/176 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR + + ++++ LID+MLE + + G+G+A Sbjct: 3 TMKDIIRDGHPTLRAKAEEVPLPLSTEDRQLIDDMLEFLKMSQDEEQSRKYQLRSGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMV-FINPKIITFSDDFSVYQ--EGCLSIPD-YRADV 104 A Q+ R++VI D INPKII+ S + S EGCLS+ + V Sbjct: 63 APQLNHKKRMLVIHFYDEKKGDYVTHQLINPKIISHSVEKSYLPTGEGCLSVDEAVPGIV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R A ITV+ + + + A QHE+DHLNG++F DH+ + + K Sbjct: 123 HRYARITVKAYTPDGEEVKLRLKDFSAIVAQHEIDHLNGVMFYDHIDKADPMKVQK 178 >gi|256850954|ref|ZP_05556343.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260661168|ref|ZP_05862082.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|282934131|ref|ZP_06339409.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|297205836|ref|ZP_06923231.1| peptide deformylase [Lactobacillus jensenii JV-V16] gi|256616016|gb|EEU21204.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260548105|gb|EEX24081.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|281301745|gb|EFA94011.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|297148962|gb|EFH29260.1| peptide deformylase [Lactobacillus jensenii JV-V16] Length = 184 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LRRV+ + ++ L D+M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRRVADQLTFPLSDHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D F+NPKII+ S EGCLS+ V R Sbjct: 65 QVGEGVQMASLLVPNDKGEIIFKETFVNPKIISESVRQVCLSEGEGCLSVDKVIDGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T++Y + + + I G A HE+DHLNG LF D +++ Sbjct: 125 PNKLTIKYFTVDGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRINK 170 >gi|227529038|ref|ZP_03959087.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] gi|227351050|gb|EEJ41341.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] Length = 190 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 20/168 (11%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+ + + ++ + +E + + G+GLAA Sbjct: 8 KDIVRDGDPVLRKRAAKVTFPLSEEDQEFAKRAMEYLEVSQDPELCKKYKLRAGVGLAAP 67 Query: 51 QIGVLYRLVVIDL----QDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIP-DYRAD 103 Q+G+ ++ + + +D V INP I++ S + EGCLS+ D Sbjct: 68 QVGISKQMAAVLVPSLNEDDDQPSFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 127 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R IT+RY D + + A QHE+DHL+G+LF DH++ Sbjct: 128 VPRHDRITLRYQDVKGETHQLRLKNYPAIVCQHEIDHLHGVLFYDHIN 175 >gi|239636306|ref|ZP_04677308.1| polypeptide deformylase [Staphylococcus warneri L37603] gi|239597661|gb|EEQ80156.1| polypeptide deformylase [Staphylococcus warneri L37603] Length = 162 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 7/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PI + + ++ + + + ++ + +Y+ +G L+A QIG+ ++ + Sbjct: 1 MSVKKLVKSEHPIFNQPANSVKHFDDQLKQTLIDVEDSLYALEGSALSANQIGINQQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INPKI S++ EG +S+P+ +V+RS I V D N Sbjct: 61 VDM----EMEGLLQLINPKIKKQSEETITDLEGSVSLPNVFGEVERSKMIVVESNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A +A + H +D LNGI F + KR + ++M + Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTEKA---KRILSEEEMEAYFE 160 >gi|218188450|gb|EEC70877.1| hypothetical protein OsI_02402 [Oryza sativa Indica Group] gi|222618667|gb|EEE54799.1| hypothetical protein OsJ_02204 [Oryza sativa Japonica Group] Length = 155 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 14/132 (10%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI-------------DLQDHAHRK-NPMVFINPKI 80 M+ VM G+GLAA QIGV +++V+ D++ R + +V INPK+ Sbjct: 1 MVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKL 60 Query: 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 T S +++ EGCLS+ YRA V+R + V +D N + + A G A LQHE DH Sbjct: 61 KTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDH 120 Query: 141 LNGILFIDHLSR 152 L G L++D + Sbjct: 121 LEGTLYVDTMVP 132 >gi|146319598|ref|YP_001199310.1| peptide deformylase [Streptococcus suis 05ZYH33] gi|146321796|ref|YP_001201507.1| peptide deformylase [Streptococcus suis 98HAH33] gi|253752596|ref|YP_003025737.1| polypeptide deformylase [Streptococcus suis SC84] gi|253754422|ref|YP_003027563.1| polypeptide deformylase [Streptococcus suis P1/7] gi|253756356|ref|YP_003029496.1| polypeptide deformylase [Streptococcus suis BM407] gi|158514139|sp|A4VXS1|DEF_STRSY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158514157|sp|A4W418|DEF_STRS2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145690404|gb|ABP90910.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33] gi|145692602|gb|ABP93107.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33] gi|251816885|emb|CAZ52534.1| polypeptide deformylase [Streptococcus suis SC84] gi|251818820|emb|CAZ56662.1| polypeptide deformylase [Streptococcus suis BM407] gi|251820668|emb|CAR47430.1| polypeptide deformylase [Streptococcus suis P1/7] gi|292559212|gb|ADE32213.1| Formylmethionine deformylase [Streptococcus suis GZ1] gi|319759011|gb|ADV70953.1| peptide deformylase [Streptococcus suis JS14] Length = 204 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ P LR+V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFSDDFSVYQ--EGCLSIP-D 99 I V R++ + + NP V NPKI+ S + + EGCLS+ + Sbjct: 78 IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVLYNPKIVAHSVQEAAMEGGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + V R A +TV YMD N + I G A +QHE+DHLNG++F D + + Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGVMFYDRIDPEHPFAVK 197 Query: 160 KKM 162 + M Sbjct: 198 EGM 200 >gi|116629817|ref|YP_814989.1| peptide deformylase [Lactobacillus gasseri ATCC 33323] gi|282851676|ref|ZP_06261041.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311110541|ref|ZP_07711938.1| peptide deformylase [Lactobacillus gasseri MV-22] gi|122273245|sp|Q042S1|DEF_LACGA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116095399|gb|ABJ60551.1| peptide deformylase [Lactobacillus gasseri ATCC 33323] gi|282557644|gb|EFB63241.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311065695|gb|EFQ46035.1| peptide deformylase [Lactobacillus gasseri MV-22] Length = 184 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 + +P+LR+V++P+ + + L D M++ + ++ G+GLAA Q Sbjct: 6 DITRDGNPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107 +G ++ + + D VF+NPKII+ S + EGCLS+ D V R Sbjct: 66 VGKSIQMAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRP 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + Y + + + I A HE+DHLNG LF D +++ Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|89097400|ref|ZP_01170289.1| peptide deformylase [Bacillus sp. NRRL B-14911] gi|89087696|gb|EAR66808.1| peptide deformylase [Bacillus sp. NRRL B-14911] Length = 192 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K +V DPILR+ + + +N + +++ M+E + ++ G+GL+A Sbjct: 12 KDIVREGDPILRQKTAEVAVPLNQEDHVIMEMMMEYLKNSQDPELAYKYQLRPGVGLSAN 71 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRS 107 QIG R+ +D + NPKII+ S EG CLS+ + + V R Sbjct: 72 QIGEDKRMFAAFFRDEKGEVKELRVFNPKIISHSAAMVYLPEGEGCLSVDREVKGYVPRY 131 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I ++Y D + + G+ + +QHE+DHLNGI+F D +++ Sbjct: 132 ERIKIKYSDEKGEQVEMRLKGIASVIVQHEIDHLNGIMFYDRINKE 177 >gi|300361479|ref|ZP_07057656.1| peptide deformylase [Lactobacillus gasseri JV-V03] gi|300354098|gb|EFJ69969.1| peptide deformylase [Lactobacillus gasseri JV-V03] Length = 184 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 + +P+LR+V++P+ + + L D M++ + ++ G+GLAA Q Sbjct: 6 DITRDGNPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107 +G ++ + + D VF+NPKI++ S + EGCLS+ D V R Sbjct: 66 VGKSIQMAALLVPNDKGEIIFKEVFVNPKILSESVRKACLAEGEGCLSVDKDIEGYVPRP 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + Y + + + I A HE+DHLNG LF D +++ Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|223933744|ref|ZP_03625717.1| peptide deformylase [Streptococcus suis 89/1591] gi|223897586|gb|EEF63974.1| peptide deformylase [Streptococcus suis 89/1591] Length = 204 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ P LR+V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFSDDFSVYQ--EGCLSIP-D 99 I V R++ + + NP V NPKI+ S + + EGCLS+ + Sbjct: 78 IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + V R A +TV YMD N + I G A +QHE+DHLNG++F D + + Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGVMFYDRIDPEHPFAVK 197 Query: 160 KKM 162 + M Sbjct: 198 EGM 200 >gi|329571126|gb|EGG52832.1| peptide deformylase [Enterococcus faecalis TX1467] Length = 187 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ +P LR V+ + I + L ++ML + ++ G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101 A Q+ + R++ + + + V NPKI++ S EGCLS+ D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHVKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|163751756|ref|ZP_02158973.1| peptide deformylase [Shewanella benthica KT99] gi|161328320|gb|EDP99480.1| peptide deformylase [Shewanella benthica KT99] Length = 114 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 53/115 (46%), Positives = 72/115 (62%), Gaps = 3/115 (2%) Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +G + ++VIDL + R P V INP+I+ DF + +EGCLSIP YRA V RS +T Sbjct: 3 VGSQHAILVIDLSE--ERDQPQVLINPEIVATEGDF-IGEEGCLSIPGYRAKVARSEQVT 59 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 V+ +D + I D LA LQHE+DHL GI+F DHLS+LK+ + KK+ K Sbjct: 60 VKALDRTGKPFDIETDTFLAIVLQHEIDHLQGIVFTDHLSKLKQQIALKKVKKYA 114 >gi|199598173|ref|ZP_03211595.1| peptide deformylase [Lactobacillus rhamnosus HN001] gi|229552108|ref|ZP_04440833.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1] gi|258508310|ref|YP_003171061.1| peptide deformylase [Lactobacillus rhamnosus GG] gi|258539523|ref|YP_003174022.1| peptide deformylase [Lactobacillus rhamnosus Lc 705] gi|199590934|gb|EDY99018.1| peptide deformylase [Lactobacillus rhamnosus HN001] gi|229314541|gb|EEN80514.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1] gi|257148237|emb|CAR87210.1| Peptide deformylase [Lactobacillus rhamnosus GG] gi|257151199|emb|CAR90171.1| Peptide deformylase [Lactobacillus rhamnosus Lc 705] gi|259649627|dbj|BAI41789.1| peptide deformylase [Lactobacillus rhamnosus GG] gi|328462751|gb|EGF34641.1| peptide deformylase [Lactobacillus rhamnosus MTCC 5462] Length = 184 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 17/167 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50 K + +LR ++P+ ++ + L +M+ E + G+GLAA Sbjct: 5 KDITRDGAKVLRERAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106 Q+G + + + D+ V INP+II+ S + EGCLS+ D V R Sbjct: 65 QVGQSKAMAAVLVPGDNDEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + IT+ Y + +H+ + A QHE+DHLNG+LF DH+++ Sbjct: 125 ADRITIAYQNEAGEHKKVRLKNYPAIVCQHEIDHLNGVLFYDHINKE 171 >gi|116513853|ref|YP_812759.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275377|sp|Q04B51|DEF_LACDB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116093168|gb|ABJ58321.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 184 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LR+V++ + ++ L D+M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G + + + D V++NP+II+ S + EGCLS+ V R Sbjct: 65 QVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 125 PNKVTVHYWTVDGEEKAIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171 >gi|259046789|ref|ZP_05737190.1| peptide deformylase [Granulicatella adiacens ATCC 49175] gi|259036557|gb|EEW37812.1| peptide deformylase [Granulicatella adiacens ATCC 49175] Length = 186 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 18/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K +V+ P LR+ + + ++ + L MLE ++++ G+GLA Sbjct: 3 TMKDIVLEGHPALRKRAEKLTFPLSPEHQELAKEMLEFLHNSQNPEIAEKYGLRAGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSV--YQEGCLSI-PDYRAD 103 A Q+G +++ + + + + V+INP+I+ S + EGCLS+ + Sbjct: 63 APQLGKSIQMIALLVPGFEEEEAILDEVWINPRIMRESVKKACLKDGEGCLSVNREVPGI 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R ITV+Y D N + + A +QHE+DHLNG++F DH++ Sbjct: 123 VLRPERITVKYQDVNGDEFVRTLNDYEAIVVQHEIDHLNGVMFYDHIN 170 >gi|223043863|ref|ZP_03613905.1| peptide deformylase [Staphylococcus capitis SK14] gi|222442767|gb|EEE48870.1| peptide deformylase [Staphylococcus capitis SK14] Length = 183 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ + ++ + + M E + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLREKAKDLSFPLSEEDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 A QI V R++ + L D + + +NPK++++S + + EGCLS+ + V Sbjct: 63 APQIDVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNG++F D++ Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYID 169 >gi|300778831|ref|ZP_07088689.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] gi|300504341|gb|EFK35481.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] Length = 211 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 2/151 (1%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHAHR 69 L +S + ++ +I L+ M E + STDG +G+AA Q+G+ +++ + D Sbjct: 48 HKTLLNISSEADPLDPNIAVLVKRMRESLLSTDGGVGIAAPQVGINRKIIWVQRFDKEGA 107 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 FINP I+ SD ++ EG LSIPD+R RS I + Y+D Q +G Sbjct: 108 P-LEYFINPVIVWRSDLQNLGPEGDLSIPDFRDQFYRSKVIQLEYVDLKGQKYSEIVEGF 166 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A QHE+DHL GIL D + K D K Sbjct: 167 TAVIFQHEIDHLFGILISDKKEKEKNDSYKK 197 >gi|326803937|ref|YP_004321755.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a] gi|326650536|gb|AEA00719.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a] Length = 192 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 22/170 (12%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 + +P+L R + I +N +M+E +Y++ G+GLAA Q Sbjct: 6 DITRDGNPVLHREADTITFPLNEAQKQAAHDMMEYLYNSQDEEKGPELGLRAGVGLAAPQ 65 Query: 52 IGVLYRLV------VIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRA 102 +G+ +++ + D V +NPKII+ S + EGCLS+ D Sbjct: 66 VGIGEKMIALLVPNIEDPDSDEEIILEGVMVNPKIISHSVEKVCLREGEGCLSVDDDVSG 125 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A IT+ Y D H G A LQHE+DHL+G L+ + +++ Sbjct: 126 YVPRYARITITYDDLEGNHFKKRFKGYPAIVLQHEIDHLDGHLYYERINK 175 >gi|323340641|ref|ZP_08080893.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] gi|323091764|gb|EFZ34384.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] Length = 198 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 18/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ P LR + I ++ + + L +++E + ++ G+GLAA Q Sbjct: 20 DIIREGHPTLRARAEKIAFPLSDEDLKLAHDLMEFLENSQDEKIAKKYKLRAGVGLAAPQ 79 Query: 52 IGVLYRLVVIDLQDHAHRKN--PMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106 + R+ + + D + V +NP I++ S + EGCLS+ + V R Sbjct: 80 VDASKRITAVLVPDEEGKPPFFKHVLVNPTILSESVQMAALSEGEGCLSVDREVPGYVPR 139 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I +R+ D + + A +QHE+DHLNGI+F DH++ Sbjct: 140 HEKIKLRWYDLDGNEHVERLRDYTAIVVQHEIDHLNGIMFYDHIN 184 >gi|238853448|ref|ZP_04643827.1| peptide deformylase [Lactobacillus gasseri 202-4] gi|238834020|gb|EEQ26278.1| peptide deformylase [Lactobacillus gasseri 202-4] Length = 184 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 + +P+LR+V+RP+ + + L D M++ + ++ G+GLAA Q Sbjct: 6 DITRDGNPVLRQVARPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107 +G ++ + + D VF+NPKII+ S + EGCLS+ D V R Sbjct: 66 VGKSIQMAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRP 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + Y + + + I A HE+DHLNG LF D +++ Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|283470302|emb|CAQ49513.1| peptide deformylase [Staphylococcus aureus subsp. aureus ST398] Length = 183 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR+ + +E + + M E + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLRQKAAELELPFTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104 A QI + R++ + + D + + +NPKI++ S + + EGCLS+ D V Sbjct: 63 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|116492920|ref|YP_804655.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745] gi|122265616|sp|Q03F09|DEF_PEDPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116103070|gb|ABJ68213.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745] Length = 184 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 17/166 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 + +P+LR+ + + ++ + + D M+E + ++ G+GLAA Q Sbjct: 6 DITRDGNPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPAIAEKYHLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRS 107 IG+ ++ + + + + +NP I++ S + +EG CLS+ D V R Sbjct: 66 IGLSIQMASVLVPGPDNTIDLEETLVNPVIVSQSVQIAALEEGEGCLSVDKDVPGYVPRH 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITVRY + + + I A QHE+DHL G LF DH+++ Sbjct: 126 DRITVRYQTLDGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINKE 171 >gi|314933288|ref|ZP_07840653.1| peptide deformylase [Staphylococcus caprae C87] gi|313653438|gb|EFS17195.1| peptide deformylase [Staphylococcus caprae C87] Length = 183 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ + ++ + + +M E + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLREKAKELSFPLSEEDKETLRSMREFLINSQDEETAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 A QI + R++ + L D + + +NPK++++S + + EGCLS+ + V Sbjct: 63 APQIDLAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNG++F D++ Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYID 169 >gi|293376283|ref|ZP_06622524.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325842152|ref|ZP_08167617.1| peptide deformylase [Turicibacter sp. HGF1] gi|292645101|gb|EFF63170.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325489718|gb|EGC92076.1| peptide deformylase [Turicibacter sp. HGF1] Length = 184 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 16/169 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ P L +V+ + ++ + + L+ +ML+ + ++ + +GLA Sbjct: 3 TMKDIIREGHPTLSKVASEVAIPLSKEDVQLMKDMLQFIINSQTPEVAKKYQLRESVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105 A Q+ + R++ + +D + + NPKI+++S++ + EGCLS+ + V Sbjct: 63 APQLNLDKRIIAVHTEDEKGKLYSLALANPKIVSYSEEITYLPMGEGCLSVDREVEGFVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 R ITV + + ++ QHE+DHLNG LFIDH+ + Sbjct: 123 RYRRITVEGYNLKGEKIKFRLRDYVSIVFQHEIDHLNGHLFIDHIDPKQ 171 >gi|315658596|ref|ZP_07911467.1| peptide deformylase [Staphylococcus lugdunensis M23590] gi|315496385|gb|EFU84709.1| peptide deformylase [Staphylococcus lugdunensis M23590] Length = 183 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ ++ ++ + + +M E + ++ G+GLA Sbjct: 3 TMKDIIKDGHPTLRAEAQDVDFPLSDEDKQTLKSMREFLINSQDDEIANRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADV 104 A QI + +++ + L D R ++ +NPK+I++S ++ EGCLS+ + V Sbjct: 63 APQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVISYSVQYAYLPTGEGCLSVDKNIAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +TV+ D + + + G A +QHE+DHLNGI+F DH+ Sbjct: 123 HRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHID 169 >gi|262045875|ref|ZP_06018839.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] gi|260573834|gb|EEX30390.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] Length = 184 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V D +LR+V++P+ ++ L D+M++ + + G+GLAA Sbjct: 5 KDIVRDGDSVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D + V++NP+I++ S + EGCLS+ + V R Sbjct: 65 QVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|289551097|ref|YP_003472001.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] gi|289180629|gb|ADC87874.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] Length = 183 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ ++ ++ + + +M E + ++ G+GLA Sbjct: 3 TMKDIIKDGHPTLRAEAQDVDFPLSDEDKQTLKSMREFLINSQDDEIANRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADV 104 A QI + +++ + L D R ++ +NPK++++S ++ EGCLS+ + V Sbjct: 63 APQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVVSYSVQYAYLPTGEGCLSVDKNIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +TV+ D + + + G A +QHE+DHLNGI+F DH+ Sbjct: 123 HRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHID 169 >gi|254457085|ref|ZP_05070513.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] gi|207085877|gb|EDZ63161.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] Length = 278 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 4/165 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P P + N +I+++I ++ + + + LAA QIG +Y ++VI Sbjct: 1 MVRDIITYPTPPSVEYGTDVRVFNEEIISIIQDLKDTIEANSLEALAAFQIGAMYNIIVI 60 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D+ A + INP+II+ S+ S ++ P A+V+R +++ Y D N Sbjct: 61 KKGDMSFVAGDDGFLELINPRIISCSEKISTVEKTAY-FPGLSANVERHNNVSIIYEDKN 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + A G A LQ ++D+ G FI+ LS+ ++ + KK+ Sbjct: 120 FKQHNLKATGGEAILLQRKIDYTFGSSFINKLSKDEKKLFEKKLE 164 >gi|86140860|ref|ZP_01059419.1| putative polypeptide deformylase protein [Leeuwenhoekiella blandensis MED217] gi|85832802|gb|EAQ51251.1| putative polypeptide deformylase protein [Leeuwenhoekiella blandensis MED217] Length = 219 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 6/149 (4%) Query: 13 ILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAH 68 +LR S + ++ +MNLID M + + G G+AA Q+G+L R+ + D Sbjct: 60 LLRTPSEAVTVDPKDTVLMNLIDRMYTTVRDSLSLGAGIAAPQVGILKRIAWVQRFDKEG 119 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV-KRSAFITVRYMDCNAQHQIIYAD 127 V INP I +S EGCLSIP R + R+ I V Y +A H+I + Sbjct: 120 FPF-EVIINPVIKQYSKKKQDCPEGCLSIPGRRDTLSTRAYAILVEYDKPDASHEIEMVE 178 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRD 156 A QHE+DHLNGIL++DHL + +D Sbjct: 179 DFTAVVFQHEIDHLNGILYLDHLKQEIKD 207 >gi|326438101|gb|EGD83671.1| hypothetical protein PTSG_12149 [Salpingoeca sp. ATCC 50818] Length = 214 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 18/164 (10%) Query: 6 LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ P+LR + PI++ + I NL+D++ + G GL A QIG +L V++ Sbjct: 16 IIEAGHPVLREKAAPIQRSDITDGSIRNLVDSLSARLREDKGFGLCAPQIGESLQLFVME 75 Query: 63 LQDH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 + R P+ I + + S ++E CLSIP Y A V R Sbjct: 76 VTPDMIELETNFRDIKMLDMRPVPLTAIANPRLKYGKKMSTHRESCLSIPGYSAHVTRPV 135 Query: 109 FITVRYM-DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I + + + G A +QHE+DHLNG L+ D + Sbjct: 136 DIHLTGLCAVTGTDVSVALSGWTARIVQHEVDHLNGCLYTDKMD 179 >gi|322411042|gb|EFY01950.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 204 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ +P LR V++ + ++ + + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 I V R++ + + + NP V NPKI++ S D EGCLS+ Sbjct: 78 IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + I G A +QHE+DH+NG++F D ++ Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190 >gi|163790334|ref|ZP_02184766.1| peptide deformylase [Carnobacterium sp. AT7] gi|159874405|gb|EDP68477.1| peptide deformylase [Carnobacterium sp. AT7] Length = 187 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 20/177 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 + ++ P LR V++ + I+S+ L ++ML+ + ++ G+GLA Sbjct: 3 TMEDIIKEGHPTLRMVAKELTLPISSEEKQLGEDMLQFLKNSQDPEIAEKYSLRAGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFSDDFS--VYQEGCLSIP-DYR 101 A Q+ + R++ + + + V +NPKII+ S + EGCLS+ + Sbjct: 63 APQLDISKRMIAVHIPGIEEGTDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 V R + IT+ Y D + I A +QHE+DH+NGI+F DH+++ + I Sbjct: 123 GYVPRHSRITLTYFDLAGEAHKIRLKNYQAIVIQHEIDHINGIMFYDHINQEQPFKI 179 >gi|227903714|ref|ZP_04021519.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796] gi|227868601|gb|EEJ76022.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796] Length = 184 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LRRVS + ++ L D+M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D + +F+NP+II+ S + EGCLS+ + V R Sbjct: 65 QVGEGVKMAALLVPDDQGNIIFKDIFVNPEIISESVRQACLSEGEGCLSVDEVINGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +TV Y + + + I A HE+DHLNG LF D +++ Sbjct: 125 PDKLTVHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|159026645|emb|CAO86579.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 181 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 7/140 (5%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +PIL++ + I+ + +SD NLID+++ + + G+G+AA Q+ RL Sbjct: 13 MTQVLTITQLGNPILQQKAPEIDNLLDSDCQNLIDSLITTVQAAHGVGIAAPQVARSLRL 72 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ + + P INP+I+ S++ EGCLS+P++R V R +I V Sbjct: 73 FIVASGPNPRYPDAPIMSPTAMINPRILQVSEEMVKGWEGCLSVPNWRGFVPRHQWIEVS 132 Query: 114 YMDCNAQHQIIYADGLLATC 133 Y N + +A Sbjct: 133 YYGRNGREIRQIFRDFVARI 152 >gi|251781679|ref|YP_002995981.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390308|dbj|BAH80767.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 204 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ +P LR V++ + ++ + + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 I V R++ + + + NP V NPKI++ S D EGCLS+ Sbjct: 78 IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + I G A +QHE+DH+NG++F D ++ Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190 >gi|70934701|ref|XP_738539.1| formylmethionine deformylase [Plasmodium chabaudi chabaudi] gi|56514841|emb|CAH86596.1| formylmethionine deformylase, putative [Plasmodium chabaudi chabaudi] Length = 132 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 1/113 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64 +V++P+P+LR+ S + + ++ +L+ M + MY + GIGL+A Q+ + R++V + L Sbjct: 20 IVMYPNPVLRQKSEEVLYFDDNLKDLVRRMFKTMYESKGIGLSAPQVNISKRIIVWNALY 79 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + KN VFINP II S + EGCLS P+ A V+R A +++ Y D Sbjct: 80 EKRDEKNERVFINPSIIQESAVKNKLVEGCLSFPNIEAKVERPAIVSISYYDI 132 >gi|15924081|ref|NP_371615.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926677|ref|NP_374210.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315] gi|148267584|ref|YP_001246527.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9] gi|150393639|ref|YP_001316314.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1] gi|156979414|ref|YP_001441673.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu3] gi|253316344|ref|ZP_04839557.1| peptide deformylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005878|ref|ZP_05144479.2| peptide deformylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795178|ref|ZP_05644157.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|258407113|ref|ZP_05680262.1| peptide deformylase [Staphylococcus aureus A9763] gi|258421795|ref|ZP_05684716.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|258436159|ref|ZP_05689142.1| peptide deformylase [Staphylococcus aureus A9299] gi|258443352|ref|ZP_05691695.1| peptide deformylase [Staphylococcus aureus A8115] gi|258444962|ref|ZP_05693279.1| peptide deformylase [Staphylococcus aureus A6300] gi|258449863|ref|ZP_05697961.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224] gi|258454962|ref|ZP_05702925.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937] gi|269202702|ref|YP_003281971.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|282894118|ref|ZP_06302349.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|282928613|ref|ZP_06336210.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|295405895|ref|ZP_06815704.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|296276492|ref|ZP_06858999.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1] gi|297246365|ref|ZP_06930209.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|56749813|sp|P68825|DEF_STAAM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56749814|sp|P68826|DEF_STAAU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56749815|sp|P99077|DEF_STAAN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22219285|pdb|1LQW|A Chain A, Crystal Structure Of S.Aureus Peptide Deformylase gi|22219286|pdb|1LQW|B Chain B, Crystal Structure Of S.Aureus Peptide Deformylase gi|75766236|pdb|2AI9|A Chain A, S.Aureus Polypeptide Deformylase gi|75766237|pdb|2AI9|B Chain B, S.Aureus Polypeptide Deformylase gi|9965494|gb|AAG02249.1| peptide deformylase Pdf1 [Staphylococcus aureus] gi|13700892|dbj|BAB42188.1| pdf1 [Staphylococcus aureus subsp. aureus N315] gi|14246861|dbj|BAB57253.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp. aureus Mu50] gi|147740653|gb|ABQ48951.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9] gi|149946091|gb|ABR52027.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1] gi|156721549|dbj|BAF77966.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp. aureus Mu3] gi|257789150|gb|EEV27490.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|257841268|gb|EEV65713.1| peptide deformylase [Staphylococcus aureus A9763] gi|257842128|gb|EEV66556.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|257848848|gb|EEV72833.1| peptide deformylase [Staphylococcus aureus A9299] gi|257851442|gb|EEV75381.1| peptide deformylase [Staphylococcus aureus A8115] gi|257856084|gb|EEV79002.1| peptide deformylase [Staphylococcus aureus A6300] gi|257856783|gb|EEV79686.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224] gi|257862842|gb|EEV85607.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937] gi|262074992|gb|ACY10965.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|282589652|gb|EFB94738.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|282763604|gb|EFC03733.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|285816772|gb|ADC37259.1| Peptide deformylase [Staphylococcus aureus 04-02981] gi|294969330|gb|EFG45350.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|297176731|gb|EFH35991.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|312829485|emb|CBX34327.1| peptide deformylase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130323|gb|EFT86310.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS03] gi|329725200|gb|EGG61689.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172] Length = 183 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR+ + +E + + + M E + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104 A QI + R++ + + D + + +NPKI++ S + + EGCLS+ D V Sbjct: 63 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|58337138|ref|YP_193723.1| peptide deformylase [Lactobacillus acidophilus NCFM] gi|58254455|gb|AAV42692.1| polypeptide deformylase Pdf [Lactobacillus acidophilus NCFM] Length = 191 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LRRVS + ++ L D+M+E + ++ G+GLAA Sbjct: 12 KDIVRDGDPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAP 71 Query: 51 QIGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D + +F+NP+II+ S + EGCLS+ + V R Sbjct: 72 QVGEGVKMAALLVPDDQGNIIFKDIFVNPEIISESVRQACLSEGEGCLSVDEVINGYVPR 131 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +TV Y + + + I A HE+DHLNG LF D +++ Sbjct: 132 PDKLTVHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 177 >gi|37626151|gb|AAQ96527.1| hypothetical protein [Vibrio phage VP16T] Length = 137 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 67/141 (47%), Gaps = 6/141 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ P L ++ + D+ +L+ +M M + GIGLA Q+GVL R++V+ Sbjct: 3 ILKDDAPELHAIAAEVPH-GEDVKDLVLDMTAAMTAAGGIGLAGNQVGVLKRIIVLRCPT 61 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 INP I +D EGCLS P KR + V D + Q I Sbjct: 62 FKG-----CVINPIITRHTDGHVYSPEGCLSYPGKTVAKKRRNKVVVEGYDMDWQPITIA 116 Query: 126 ADGLLATCLQHELDHLNGILF 146 A GL A CLQHE+DHLNG+ Sbjct: 117 AKGLTAFCLQHEIDHLNGVTI 137 >gi|253731702|ref|ZP_04865867.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733674|ref|ZP_04867839.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|297208271|ref|ZP_06924701.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297591467|ref|ZP_06950105.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|300912348|ref|ZP_07129791.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|304381351|ref|ZP_07364004.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253724516|gb|EES93245.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728374|gb|EES97103.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|296887010|gb|EFH25913.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576353|gb|EFH95069.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|300886594|gb|EFK81796.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|304340334|gb|EFM06275.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438532|gb|ADQ77603.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60] gi|320141093|gb|EFW32940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143150|gb|EFW34940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177] Length = 207 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR+ + +E + + + M E + ++ G+GLA Sbjct: 27 TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 86 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104 A QI + R++ + + D + + +NPKI++ S + + EGCLS+ D V Sbjct: 87 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 146 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 147 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 194 >gi|163840759|ref|YP_001625164.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] gi|162954235|gb|ABY23750.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] Length = 213 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V P LR ++P + S++ ++ M M++ G GLAA Q+GV +L V++ Sbjct: 27 EIVQAGHPTLRAPAQPWNGQLGASELEQFVELMRRCMHAAPGFGLAAPQLGVSLQLAVLE 86 Query: 63 --------LQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + R N +NP+ + + EGCLS+ ++A V R I + Sbjct: 87 DGHQVDSEIASIRERSNLPFFAMLNPRYQPLNSILVGFYEGCLSMSGWQAVVYRHHAIQL 146 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y + + G A +QHE DHL G+L++D Sbjct: 147 TYTTVDGELVQRELAGWPARIVQHETDHLAGMLYLDKAK 185 >gi|323466783|gb|ADX70470.1| Peptide deformylase [Lactobacillus helveticus H10] Length = 184 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 17/174 (9%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V D +LR+V++P+ ++ L ++M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDLVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D V++NP+I++ S + EGCLS+ V R Sbjct: 65 QVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 +T+ Y + + + I A HE+DHLNG LF D +++ + + + Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKE 178 >gi|319401586|gb|EFV89796.1| peptide deformylase [Staphylococcus epidermidis FRI909] Length = 183 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ + ++++ + M E + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 A QI R++ + L D + + +NPKI+++S + + EGCLS+ + V Sbjct: 63 APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169 >gi|323126471|gb|ADX23768.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 204 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ +P LR V++ + ++ + + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 I V R++ + + + NP V NPKI++ S D EGCLS+ Sbjct: 78 IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + I G A +QHE+DH+NG++F D ++ Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190 >gi|238855249|ref|ZP_04645568.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|260664609|ref|ZP_05865461.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|282932458|ref|ZP_06337883.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|313471931|ref|ZP_07812423.1| peptide deformylase [Lactobacillus jensenii 1153] gi|238832141|gb|EEQ24459.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|239529143|gb|EEQ68144.1| peptide deformylase [Lactobacillus jensenii 1153] gi|260561674|gb|EEX27646.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|281303407|gb|EFA95584.1| peptide deformylase [Lactobacillus jensenii 208-1] Length = 184 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K +V DP+LRRV+ + ++ L D+M+E + ++ G+GLAA Sbjct: 5 KDIVRDGDPVLRRVADQLTFPLSEHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAP 64 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106 Q+G ++ + + D F+NPKI++ S EGCLS+ V R Sbjct: 65 QVGEGVQMASLLVPNDKGEIIFKETFVNPKIVSESVRQVCLSEGEGCLSVDKVIDGYVPR 124 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T++Y + + I G A HE+DHLNG LF D + + Sbjct: 125 PNKLTIKYFTVEGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|242242396|ref|ZP_04796841.1| peptide deformylase [Staphylococcus epidermidis W23144] gi|242234152|gb|EES36464.1| peptide deformylase [Staphylococcus epidermidis W23144] Length = 183 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ + ++++ + M E + ++ G+GLA Sbjct: 3 TMKNIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 A QI R++ + L D + + +NPKI+++S + + EGCLS+ + V Sbjct: 63 APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169 >gi|21282703|ref|NP_645791.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2] gi|49483254|ref|YP_040478.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252] gi|49485929|ref|YP_043150.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476] gi|57651700|ref|YP_185964.1| peptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|82750701|ref|YP_416442.1| peptide deformylase [Staphylococcus aureus RF122] gi|87161441|ref|YP_493689.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194790|ref|YP_499587.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221169|ref|YP_001331991.1| peptide deformylase [Staphylococcus aureus subsp. aureus str. Newman] gi|161509274|ref|YP_001574933.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140509|ref|ZP_03565002.1| peptide deformylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257425143|ref|ZP_05601569.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427806|ref|ZP_05604204.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430441|ref|ZP_05606823.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433143|ref|ZP_05609501.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus E1410] gi|257436042|ref|ZP_05612089.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|258423591|ref|ZP_05686481.1| polypeptide deformylase [Staphylococcus aureus A9635] gi|258451962|ref|ZP_05699978.1| polypeptide deformylase 2 [Staphylococcus aureus A5948] gi|262048678|ref|ZP_06021560.1| peptide deformylase [Staphylococcus aureus D30] gi|262052225|ref|ZP_06024431.1| peptide deformylase [Staphylococcus aureus 930918-3] gi|282903640|ref|ZP_06311528.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|282905409|ref|ZP_06313264.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908381|ref|ZP_06316212.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910668|ref|ZP_06318471.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913866|ref|ZP_06321653.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282916341|ref|ZP_06324103.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|282918790|ref|ZP_06326525.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282923912|ref|ZP_06331588.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|282925275|ref|ZP_06332932.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|283770153|ref|ZP_06343045.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] gi|283957835|ref|ZP_06375286.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|284024016|ref|ZP_06378414.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132] gi|293500903|ref|ZP_06666754.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|293509859|ref|ZP_06668568.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|293526445|ref|ZP_06671130.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|294848080|ref|ZP_06788827.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|295427579|ref|ZP_06820211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|39930904|sp|Q8NX78|DEF_STAAW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56748622|sp|Q6GAC3|DEF_STAAS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56748624|sp|Q6GHZ4|DEF_STAAR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71153335|sp|Q5HGZ3|DEF_STAAC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21204141|dbj|BAB94839.1| pdf1 [Staphylococcus aureus subsp. aureus MW2] gi|49241383|emb|CAG40067.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|49244372|emb|CAG42800.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus MSSA476] gi|57285886|gb|AAW37980.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|82656232|emb|CAI80645.1| peptide deformylase [Staphylococcus aureus RF122] gi|87127415|gb|ABD21929.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202348|gb|ABD30158.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373969|dbj|BAF67229.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus str. Newman] gi|160368083|gb|ABX29054.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257272119|gb|EEV04251.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274647|gb|EEV06134.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278569|gb|EEV09188.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257281236|gb|EEV11373.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus E1410] gi|257284324|gb|EEV14444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|257846292|gb|EEV70316.1| polypeptide deformylase [Staphylococcus aureus A9635] gi|257860177|gb|EEV83009.1| polypeptide deformylase 2 [Staphylococcus aureus A5948] gi|259159896|gb|EEW44934.1| peptide deformylase [Staphylococcus aureus 930918-3] gi|259163134|gb|EEW47694.1| peptide deformylase [Staphylococcus aureus D30] gi|269940586|emb|CBI48965.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus TW20] gi|282313884|gb|EFB44276.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|282316600|gb|EFB46974.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282319781|gb|EFB50129.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|282321934|gb|EFB52258.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282325273|gb|EFB55582.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282328046|gb|EFB58328.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330701|gb|EFB60215.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282592551|gb|EFB97561.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|282595258|gb|EFC00222.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|283460300|gb|EFC07390.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] gi|283789984|gb|EFC28801.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920517|gb|EFD97580.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|291095908|gb|EFE26169.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|291467309|gb|EFF09826.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|294824880|gb|EFG41302.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|295127937|gb|EFG57571.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|298694326|gb|ADI97548.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED133] gi|302332701|gb|ADL22894.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus JKD6159] gi|302750915|gb|ADL65092.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315193760|gb|EFU24155.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS00] gi|315196121|gb|EFU26478.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS01] gi|323440640|gb|EGA98350.1| peptide deformylase [Staphylococcus aureus O11] gi|323441667|gb|EGA99313.1| peptide deformylase [Staphylococcus aureus O46] gi|329313759|gb|AEB88172.1| Peptide deformylase [Staphylococcus aureus subsp. aureus T0131] gi|329728776|gb|EGG65197.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193] gi|329730791|gb|EGG67170.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189] Length = 183 Score = 130 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR+ + +E + + + M E + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104 A QI + R++ + + D + + +NPKI++ S + + EGCLS+ D V Sbjct: 63 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|328957239|ref|YP_004374625.1| peptide deformylase [Carnobacterium sp. 17-4] gi|328673563|gb|AEB29609.1| peptide deformylase [Carnobacterium sp. 17-4] Length = 187 Score = 130 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 20/177 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 + ++ P LR V++ + I+ + L ++ML+ + ++ G+GLA Sbjct: 3 TMEDIIREGHPTLRMVAKELTLPISEEEKQLGNDMLQFLKNSQDPEIAEKYNLRAGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFSDDFS--VYQEGCLSIP-DYR 101 A Q+ + RL+ + + + V +NPKII+ S + EGCLS+ + Sbjct: 63 APQLDISKRLIAVHIPGIEEGIDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 V R + IT+ Y D + A +QHE+DH+NGI+F DH+++ I Sbjct: 123 GYVPRHSRITLTYFDLEGELHKTRLKNYPAIVIQHEIDHINGIMFYDHINKEHPFKI 179 >gi|332685838|ref|YP_004455612.1| peptide deformylase [Melissococcus plutonius ATCC 35311] gi|332369847|dbj|BAK20803.1| peptide deformylase [Melissococcus plutonius ATCC 35311] Length = 187 Score = 130 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 20/167 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR++++ + + D +NL ML E M+ G+GLAA Q Sbjct: 6 DIIREGNPTLRQIAKEVPVPLTEDDINLGREMLTFLKNSQDPIKAEEMHLRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPM----VFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 + + R++ + + D ++ M V NPKI++ S D EGCLS+ + V Sbjct: 66 LDISKRIIAVHIPDLDPDQSEMLLSTVMYNPKIVSHSVQDACLSEGEGCLSVDREVSGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R IT+ Y D + + G A +QHE+DH+NG+LF DH++ Sbjct: 126 VRHHKITITYFDETNEKHKLRLKGYAAIVVQHEIDHINGVLFYDHIN 172 >gi|27467707|ref|NP_764344.1| peptide deformylase [Staphylococcus epidermidis ATCC 12228] gi|57866596|ref|YP_188262.1| peptide deformylase [Staphylococcus epidermidis RP62A] gi|251810544|ref|ZP_04825017.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|282876551|ref|ZP_06285416.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|32129485|sp|Q8CPN4|DEF_STAES RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81674995|sp|Q5HQ78|DEF_STAEQ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|27315251|gb|AAO04386.1|AE016746_176 formylmethionine deformylase [Staphylococcus epidermidis ATCC 12228] gi|57637254|gb|AAW54042.1| peptide deformylase [Staphylococcus epidermidis RP62A] gi|251805955|gb|EES58612.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|281294639|gb|EFA87168.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|329732863|gb|EGG69209.1| peptide deformylase [Staphylococcus epidermidis VCU144] gi|329734227|gb|EGG70543.1| peptide deformylase [Staphylococcus epidermidis VCU028] gi|329735535|gb|EGG71823.1| peptide deformylase [Staphylococcus epidermidis VCU045] Length = 183 Score = 130 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR ++ + ++++ + M E + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 A QI R++ + L D + + +NPKI+++S + + EGCLS+ + V Sbjct: 63 APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169 >gi|229544091|ref|ZP_04433150.1| peptide deformylase [Bacillus coagulans 36D1] gi|229325230|gb|EEN90906.1| peptide deformylase [Bacillus coagulans 36D1] Length = 193 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 17/164 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 +V DPILR+V + + + ML+ + ++ G+GL+A Q Sbjct: 14 DIVREGDPILRKVLDEVNMPPTEEDKAELRCMLQFLKNSQDPEIAGKCNLRAGVGLSANQ 73 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSA 108 IG+ R+ + + D K VF NPK+++ S EGCLS+ V R Sbjct: 74 IGLNKRMFAVYIADEDGEKAYTVF-NPKLVSHSISMIYLPQGEGCLSVDRKVDGFVPRYE 132 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V+ D + +I G A QHE+DHLNGI+F DH+++ Sbjct: 133 RIKVKAYDLDGNEVLIKLKGYPAIVFQHEMDHLNGIMFYDHINK 176 >gi|269959028|ref|YP_003328817.1| putative polypeptide deformylase [Anaplasma centrale str. Israel] gi|269848859|gb|ACZ49503.1| putative polypeptide deformylase [Anaplasma centrale str. Israel] Length = 195 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 16/159 (10%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-------- 63 +L+ S P+EK++ +I L+D M +V+ ++ +G +A+Q+GV R+ I++ Sbjct: 13 KVLQTKSSPVEKVDDEIFELVDRMAKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAA 72 Query: 64 -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYM 115 H+ N +V +NP+I++FS + V EGCLS Y + R + ++Y Sbjct: 73 QDIKVLSGYHSLSGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYT 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D +I A LA C+QHELDHLNG+L + + ++ Sbjct: 133 DLMGNECVIRAYNWLARCIQHELDHLNGVLLANLVDNIR 171 >gi|169404547|pdb|2OS0|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E. Faecalis And S. Pyogenes Length = 188 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ +P LR V+ + I + L ++ML + ++ +GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101 A Q+ + R++ + + + V NPKI++ S EGCLS+ D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|257870629|ref|ZP_05650282.1| peptide deformylase [Enterococcus gallinarum EG2] gi|257804793|gb|EEV33615.1| peptide deformylase [Enterococcus gallinarum EG2] Length = 187 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 20/168 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V++ + ++ + L +M+E + ++ G+GLAA Q Sbjct: 6 DIIREGNPTLREVAKEVPFPLSEADIQLGKDMMEFLENSQDPVKAEELNLRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQ----DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADV 104 + + R+ + + ++ + V NPKI++ S + EGCLS+ + V Sbjct: 66 LDISKRITAVLVPSSDPENPEPEFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A IT+ Y D + Q + A +QHE+DHLNG++F DH++ Sbjct: 126 VRHARITISYYDMQGKKQKVRLKNYAAIVVQHEIDHLNGVMFYDHINE 173 >gi|295103440|emb|CBL00984.1| N-formylmethionyl-tRNA deformylase [Faecalibacterium prausnitzii SL3/3] Length = 136 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58 + +P+ DP+ L + S P ++ + ++LE + ++ +G+AA IGVL R+ Sbjct: 1 MIQPI--MHDPLFLAQKSAPATPEDAPV---ARDLLETLTAHADGCVGMAANMIGVLKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + ++ +D +V NP I+ S + +EGCLS+ R KR I V+Y + Sbjct: 56 IAVEAED-----GYLVLFNPVILKKSGQYEA-EEGCLSLEGVR-KTKRWQSIKVQYQTMD 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +I G A +QHE+DH +GIL Sbjct: 109 GKPRIKTFTGWTAQIIQHEIDHCDGILI 136 >gi|260583921|ref|ZP_05851669.1| peptide deformylase [Granulicatella elegans ATCC 700633] gi|260158547|gb|EEW93615.1| peptide deformylase [Granulicatella elegans ATCC 700633] Length = 185 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 18/175 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K +V+ P LR+ + I ++ D+ +L MLE ++++ G+GLA Sbjct: 3 TMKDIVLEGHPALRKRAGKISFPLSDDLQHLAKEMLEFLHNSQDEEIAAKYELRAGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSV--YQEGCLSI-PDYRAD 103 A Q+G +++ + + + + V+INP+I+ S + EGCLS+ D Sbjct: 63 APQLGKEIQMIALLIPGYEDEPALLDEVWINPRILRESVKKTCLKEGEGCLSVNRDVPGV 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 V R ITV+Y + ++ A +QHE+DHLNG++F DH+++ + I Sbjct: 123 VLRPQRITVKYFTPEGEEKVKTLTDYEAIVVQHEIDHLNGVMFYDHINQAQPQYI 177 >gi|57238913|ref|YP_180049.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] gi|58578845|ref|YP_197057.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] gi|58616903|ref|YP_196102.1| peptide deformylase 1 [Ehrlichia ruminantium str. Gardel] gi|57160992|emb|CAH57898.1| putative peptide deformylase 2 [Ehrlichia ruminantium str. Welgevonden] gi|58416515|emb|CAI27628.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Gardel] gi|58417471|emb|CAI26675.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] Length = 194 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 16/157 (10%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63 L +S PIEKI+ D++ L D+M++VM ++ +GL+AVQ+G R+ VI++ Sbjct: 15 LHAISHPIEKIDQDVIALADDMMKVMENSKTVGLSAVQLGSHKRMFVINMFSGLFDMTQD 74 Query: 64 -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDC 117 H+ MV INP+I++FS + EGC S Y ++ R + RY D Sbjct: 75 IKVLSGHHSLHGKNMVCINPEILSFSAETVDLFEGCSSAKSYGLINITRPRHMDFRYTDL 134 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 II G L+ C+QHE+DHLNGIL + + +K Sbjct: 135 FGNKCIIRVYGWLSRCIQHEMDHLNGILLANVVDNIK 171 >gi|293366921|ref|ZP_06613596.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318896|gb|EFE59267.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] Length = 180 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 17/165 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K ++ P LR ++ + ++++ + M E + ++ G+GLAA Sbjct: 2 KDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLAAP 61 Query: 51 QIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKR 106 QI R++ + L D + + +NPKI+++S + + EGCLS+ + V R Sbjct: 62 QINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDENIPGLVHR 121 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 122 HHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 166 >gi|326692674|ref|ZP_08229679.1| peptide deformylase [Leuconostoc argentinum KCTC 3773] Length = 192 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 26/177 (14%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43 M + + +P+LR+V+ + ++ + L ++M+ E Sbjct: 1 MTIRFTMDKITRDGEPVLRQVAEKVPFPLSEEHAQLAEDMMTYLVISQDEEQNEKYGLRP 60 Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQ--EGCL 95 G+GLAA Q+G ++ + + + NP II+ S + EGCL Sbjct: 61 GVGLAAPQVGESLQMAAVLIPSQDPHERDAEPYFKGTIFNPVIISESVKRAALDVGEGCL 120 Query: 96 SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 S+ D V R+ ITVRY + + + + A QHE+DHL+G L+ DH++ Sbjct: 121 SVDEDVPGFVPRANRITVRYQNEQGETKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 177 >gi|88606874|ref|YP_505573.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ] gi|88597937|gb|ABD43407.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ] Length = 197 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-------- 63 +L VS P+E ++S +++ M+++ D +GL+AVQ+G R+ VID+ Sbjct: 13 KVLHTVSSPLESVDSATREIVNEMIKIAERGDTVGLSAVQLGYPIRVFVIDMFSGLFNIT 72 Query: 64 -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-RADVKRSAFITVRYM 115 H+H +V INP+I++FS + EGCLS+ Y ++R + ++Y Sbjct: 73 EDLKVISGHHSHNTRSLVCINPQIVSFSGETVTLFEGCLSVKSYGMVGIQRPGNVDLKYT 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D +I LA C+QHE+DHLNG+L + L +K Sbjct: 133 DLAGNVCVIRTFNWLARCVQHEMDHLNGVLLANMLDNIKNKSAQS 177 >gi|300770446|ref|ZP_07080325.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] gi|300762922|gb|EFK59739.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] Length = 430 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 7/151 (4%) Query: 7 VIFPD--PILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVID 62 V P+ IL+ S+ I+ + + L M + D G+G+AA Q+G+ I Sbjct: 258 VTEPNDLEILKAPSQDIKYDDPLLDLLSQRMYATVNDPDHSGVGIAAPQVGINKN--AIW 315 Query: 63 LQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 +Q + P F +NPKII S EGCLSIP + DV RS I ++Y++ Sbjct: 316 VQRFDKKDTPFEFYVNPKIIWRSKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYVNKTGDI 375 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +G A QHE+DHL GILF D L Sbjct: 376 IEENIEGFTAVIFQHEVDHLYGILFTDRLEE 406 >gi|270291431|ref|ZP_06197653.1| polypeptide deformylase [Pediococcus acidilactici 7_4] gi|304385144|ref|ZP_07367490.1| peptide deformylase [Pediococcus acidilactici DSM 20284] gi|270280277|gb|EFA26113.1| polypeptide deformylase [Pediococcus acidilactici 7_4] gi|304329338|gb|EFL96558.1| peptide deformylase [Pediococcus acidilactici DSM 20284] Length = 184 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 + +P+LR+ + + ++ + + D M+E + ++ G+GLAA Q Sbjct: 6 DITRDGNPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPKIAQKYHLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRS 107 IG+ ++ + + +NP I++ S + EG CLS+ + V R Sbjct: 66 IGLSIQMASVLVPGPDDEIIFEETLVNPVIVSQSVQVAALDEGEGCLSVDKEVPGYVPRY 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT+RY + + + I A QHE+DHL G LF DH+++ Sbjct: 126 DRITIRYQNVEGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINK 170 >gi|295425141|ref|ZP_06817846.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] gi|295065200|gb|EFG56103.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] Length = 200 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 K + +P+LR+V++P+ ++ L +M+E + ++ G+GLAA Sbjct: 21 KDITRDGNPVLRKVAQPLTFPLSDHYKQLAKDMMEYLINSQDPKIAEKHQLRAGVGLAAP 80 Query: 51 QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106 Q+ ++ + + D + F+NP+II+ S EGCLS+ + V R Sbjct: 81 QVDESVQMASLLVPDDKGNILFKETFVNPEIISESVRKVCLSEGEGCLSVDKEIDGYVPR 140 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 141 PDKLTIHYFTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 186 >gi|229823199|ref|ZP_04449268.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271] gi|229787365|gb|EEP23479.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271] Length = 185 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 22/170 (12%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50 + ++ P LR+ + +E + ++ M E + ++ G+GLAA Sbjct: 2 QDIIEEGHPTLRQAAEAVEFPLTDELKATALAMHEFLVNSQNPEIAEKYGLRAGVGLAAP 61 Query: 51 QIGVLYRLVVIDLQDHAHRKNP------MVFINPKIITFSDDFSV--YQEGCLSI-PDYR 101 QI + ++ + + + N + NPKII+ S EGCLS+ + Sbjct: 62 QINLPKQIFAVHIMSYDEEGNEAEPLLSEILFNPKIISHSVQEVALRDGEGCLSVNREVP 121 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R I +RY D + + A +QHELDHL GI+F DH++ Sbjct: 122 GLVPRPRRIRLRYQDMEGKEHELRLRDYEAIVVQHELDHLKGIMFYDHIN 171 >gi|332830436|gb|EGK03064.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286] Length = 189 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 12/148 (8%) Query: 14 LRRVSRPIE----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 LR+ S I + D + I + + G+G+AA Q+GV L + D + Sbjct: 32 LRKKSIDINIKNIASDKDWQHFIQRLKLTLAVESGVGIAAPQVGVGRNLFLFTRIDRPDK 91 Query: 70 KNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V INP+I+ SD+ ++ +GCLS+PD KR A+I V Y + + G Sbjct: 92 AI-QVAINPRIVNHSDETICFEGDGCLSVPDLSGSTKRYAWIDVEYYNEKGELIKERLSG 150 Query: 129 ------LLATCLQHELDHLNGILFIDHL 150 QHE DHL GILFID L Sbjct: 151 QSRGSDFTGIIFQHEFDHLQGILFIDRL 178 >gi|300768287|ref|ZP_07078192.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494351|gb|EFK29514.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 186 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 20/171 (11%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIG 46 M+K + ++ + LR ++ ++ ++ L ++M+E + ++ G+G Sbjct: 1 MIKMRDIIREGNHTLRAEAKQVKFPLSEADQKLANDMMEYLENSQNPELAKKYGLRAGVG 60 Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFS--DDFSVYQEGCLSIP-DY 100 LAA Q+ V ++ + + P+ V INP II+ S EGCLS+ D Sbjct: 61 LAAPQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDI 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R IT+RY + + + I A QHE+DHL+GILF DH++ Sbjct: 121 AGYVIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171 >gi|156303056|ref|XP_001617464.1| hypothetical protein NEMVEDRAFT_v1g78625 [Nematostella vectensis] gi|156193964|gb|EDO25364.1| predicted protein [Nematostella vectensis] Length = 135 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 12/127 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + +P+LR+VS I K ++ I +M E MY G+GLAA Q+G+ RL VI Sbjct: 9 MILPIYGYGEPVLRKVSEEITKEYPNLKETIADMFETMYQAYGLGLAAPQVGLPIRLFVI 68 Query: 62 DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + A VFIN KI+ D + EGCLSIPD R DV R Sbjct: 69 DTEPLADSDEVSKEEAEELKTFKKVFINAKILKEEGDVWGFNEGCLSIPDVREDVFRHET 128 Query: 110 ITVRYMD 116 IT+ Y D Sbjct: 129 ITIEYYD 135 >gi|299822499|ref|ZP_07054385.1| peptide deformylase [Listeria grayi DSM 20601] gi|299816028|gb|EFI83266.1| peptide deformylase [Listeria grayi DSM 20601] Length = 182 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 17/164 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR+V+ + ++ + L ML + ++ G+GLAA Q Sbjct: 6 DIVREGHPALRKVADEVTFPLSQEEKELGREMLTFLKNSQDEEIAEKYGLRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108 + VL R++ I ++D R NPKI + S + EGCLS+ + V R Sbjct: 66 LAVLKRIIAIHIED-EDRTYSYTLYNPKIRSHSVQEACLAGGEGCLSVDREVPGFVVRKE 124 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T+ D + + A +QHE+DHLNG++F DH++ Sbjct: 125 RVTIEAFDEDGNPIKLRLKSYPAIVVQHEIDHLNGVMFYDHIND 168 >gi|28378768|ref|NP_785660.1| peptide deformylase [Lactobacillus plantarum WCFS1] gi|254556973|ref|YP_003063390.1| peptide deformylase [Lactobacillus plantarum JDM1] gi|38257321|sp|Q88VB2|DEF_LACPL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28271605|emb|CAD64511.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1] gi|254045900|gb|ACT62693.1| peptide deformylase [Lactobacillus plantarum JDM1] Length = 186 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 20/171 (11%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIG 46 M+K + ++ + LR ++ ++ ++ L ++M+E + ++ G+G Sbjct: 1 MIKMRDIIREGNHTLRAEAKQVKFPLSEADQKLANDMMEYLENSQDPELAKKYGLRAGVG 60 Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFS--DDFSVYQEGCLSIP-DY 100 LAA Q+ V ++ + + P+ V INP II+ S EGCLS+ D Sbjct: 61 LAAPQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDI 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R IT+RY + + + I A QHE+DHL+GILF DH++ Sbjct: 121 AGYVIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171 >gi|227538920|ref|ZP_03968969.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241123|gb|EEI91138.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 432 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 70/143 (48%), Gaps = 5/143 (3%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRK 70 IL+ S+ I+ + + L M + D G+G+AA Q+G+ I +Q + Sbjct: 268 ILKATSQDIKYDDPLLELLSQRMYATVNDPDHSGVGIAAPQVGINKN--AIWVQRFDKKD 325 Query: 71 NPMVF-INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 P F +NPKII S EGCLSIP + DV RS I ++Y++ +G Sbjct: 326 TPFEFYVNPKIIWRSKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYVNKTGDIIEENIEGF 385 Query: 130 LATCLQHELDHLNGILFIDHLSR 152 A QHE+DHL GILF D L Sbjct: 386 TAVIFQHEVDHLYGILFTDRLEE 408 >gi|308180961|ref|YP_003925089.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046452|gb|ADN98995.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 186 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIG 46 M+K + ++ + LR ++ + ++ L ++M+E + ++ G+G Sbjct: 1 MIKMRDIIREGNHTLRAEAKQVNFPLSEADQKLANDMMEYLENSQDPELAKKYGLRAGVG 60 Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFS--DDFSVYQEGCLSIP-DY 100 LAA Q+ V ++ + + P+ V INP II+ S EGCLS+ D Sbjct: 61 LAAPQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDI 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R IT+RY + + + I A QHE+DHL+GILF DH++ Sbjct: 121 AGYVIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171 >gi|321463123|gb|EFX74141.1| hypothetical protein DAPPUDRAFT_307445 [Daphnia pulex] Length = 234 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP LR S + E + I N++ + VM IG++A QIG+ R+++I++ Sbjct: 49 QLGDPTLRLKSSEVVLDELSSERIKNILLVLRGVMKHYKAIGISAPQIGIPLRIIMIEIP 108 Query: 65 DHA-HRKNP-------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D + P VFINP + +++ E C S+ A V R + Sbjct: 109 DSLVEKFGPETCKTREIVPTPFKVFINPVMQVKDFKKTLFPEACESLKGISAIVPRYRAV 168 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V+ + + A G A +QHE+DHL+G ++ D + Sbjct: 169 HVKGYEYDGSPTEWDATGWAARIVQHEMDHLDGQIYTDIME 209 >gi|224510906|pdb|3G6N|A Chain A, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser gi|224510907|pdb|3G6N|B Chain B, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser Length = 191 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 22/174 (12%) Query: 1 MVK--KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45 M+ ++ +P LR V++ + ++ + ++L MLE + ++ G+ Sbjct: 4 MMITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGV 63 Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFS--DDFSVYQEGCLSIP- 98 GLAA Q+ + R++ + + + V NPKI++ S D EGCLS+ Sbjct: 64 GLAAPQLDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDR 123 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 124 EVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 177 >gi|220702375|pdb|3CMD|A Chain A, Crystal Structure Of Peptide Deformylase From Vre-E.Faecium gi|220702376|pdb|3CMD|B Chain B, Crystal Structure Of Peptide Deformylase From Vre-E.Faecium Length = 196 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 22/174 (12%) Query: 1 MVK--KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45 M+ ++ +P LR V++ + ++ + ++L MLE + ++ G+ Sbjct: 9 MMITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGV 68 Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFS--DDFSVYQEGCLSIP- 98 GLAA Q+ + R++ + + + V NPKI++ S D EGCLS+ Sbjct: 69 GLAAPQLDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDR 128 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 129 EVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 182 >gi|229821583|ref|YP_002883109.1| Peptide deformylase [Beutenbergia cavernae DSM 12333] gi|229567496|gb|ACQ81347.1| Peptide deformylase [Beutenbergia cavernae DSM 12333] Length = 217 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 12/158 (7%) Query: 3 KKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V P+LR + E L++ M M + G+GLAA QIG+ + V Sbjct: 18 VLPIVSAGAPVLRAPAARYGGELGAERFHRLLEAMRVTMRTAPGVGLAAPQIGLPLAIAV 77 Query: 61 IDLQDHA-------HRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 I+ + P+ V +NP + + EGCLS+P Y A R + Sbjct: 78 IEDPGVDDDATAAARERVPVAFRVLVNPTYTPAGPERVSFYEGCLSVPGYVAVRARWRRV 137 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + D G A +QHE+DHL G L++D Sbjct: 138 RLLAADEAGNAVAEELAGWPARIVQHEVDHLAGELYLD 175 >gi|254994774|ref|ZP_05276964.1| Peptide deformylase [Anaplasma marginale str. Mississippi] gi|255002896|ref|ZP_05277860.1| Peptide deformylase [Anaplasma marginale str. Puerto Rico] gi|255004027|ref|ZP_05278828.1| Peptide deformylase [Anaplasma marginale str. Virginia] Length = 195 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 16/158 (10%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------- 63 +L+ S PIEK++ +++ L+D M +V+ ++ +G +A+Q+GV R+ I++ Sbjct: 14 VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 73 Query: 64 ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116 H+ N +V +NP+I++FS + V EGCLS Y + R + ++Y D Sbjct: 74 DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 133 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +I A LA C+QHE+DHLNG+L + + ++ Sbjct: 134 LMGNECVIRAYNWLARCIQHEMDHLNGVLLANLVDNIR 171 >gi|69248512|ref|ZP_00604761.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257878822|ref|ZP_05658475.1| peptide deformylase [Enterococcus faecium 1,230,933] gi|257881459|ref|ZP_05661112.1| peptide deformylase [Enterococcus faecium 1,231,502] gi|257885731|ref|ZP_05665384.1| peptide deformylase [Enterococcus faecium 1,231,501] gi|257890681|ref|ZP_05670334.1| peptide deformylase [Enterococcus faecium 1,231,410] gi|258615107|ref|ZP_05712877.1| peptide deformylase [Enterococcus faecium DO] gi|260558387|ref|ZP_05830583.1| peptide deformylase [Enterococcus faecium C68] gi|261207094|ref|ZP_05921783.1| peptide deformylase [Enterococcus faecium TC 6] gi|289565904|ref|ZP_06446344.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|293556871|ref|ZP_06675432.1| peptide deformylase [Enterococcus faecium E1039] gi|293563619|ref|ZP_06678063.1| peptide deformylase [Enterococcus faecium E1162] gi|293567826|ref|ZP_06679167.1| peptide deformylase [Enterococcus faecium E1071] gi|294614601|ref|ZP_06694505.1| peptide deformylase [Enterococcus faecium E1636] gi|294618483|ref|ZP_06698047.1| peptide deformylase [Enterococcus faecium E1679] gi|294621220|ref|ZP_06700405.1| peptide deformylase [Enterococcus faecium U0317] gi|314938849|ref|ZP_07846120.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|314943654|ref|ZP_07850408.1| peptide deformylase [Enterococcus faecium TX0133C] gi|314949089|ref|ZP_07852449.1| peptide deformylase [Enterococcus faecium TX0082] gi|314952182|ref|ZP_07855200.1| peptide deformylase [Enterococcus faecium TX0133A] gi|314991844|ref|ZP_07857301.1| peptide deformylase [Enterococcus faecium TX0133B] gi|314996555|ref|ZP_07861592.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|29650280|gb|AAO88058.1| peptide deformylase [Enterococcus faecium] gi|68194406|gb|EAN08912.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257813050|gb|EEV41808.1| peptide deformylase [Enterococcus faecium 1,230,933] gi|257817117|gb|EEV44445.1| peptide deformylase [Enterococcus faecium 1,231,502] gi|257821587|gb|EEV48717.1| peptide deformylase [Enterococcus faecium 1,231,501] gi|257827041|gb|EEV53667.1| peptide deformylase [Enterococcus faecium 1,231,410] gi|260075561|gb|EEW63867.1| peptide deformylase [Enterococcus faecium C68] gi|260078722|gb|EEW66424.1| peptide deformylase [Enterococcus faecium TC 6] gi|289162277|gb|EFD10137.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|291589411|gb|EFF21218.1| peptide deformylase [Enterococcus faecium E1071] gi|291592503|gb|EFF24108.1| peptide deformylase [Enterococcus faecium E1636] gi|291595240|gb|EFF26569.1| peptide deformylase [Enterococcus faecium E1679] gi|291599216|gb|EFF30248.1| peptide deformylase [Enterococcus faecium U0317] gi|291600955|gb|EFF31246.1| peptide deformylase [Enterococcus faecium E1039] gi|291604419|gb|EFF33909.1| peptide deformylase [Enterococcus faecium E1162] gi|313589296|gb|EFR68141.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|313593549|gb|EFR72394.1| peptide deformylase [Enterococcus faecium TX0133B] gi|313595714|gb|EFR74559.1| peptide deformylase [Enterococcus faecium TX0133A] gi|313597691|gb|EFR76536.1| peptide deformylase [Enterococcus faecium TX0133C] gi|313641860|gb|EFS06440.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|313644505|gb|EFS09085.1| peptide deformylase [Enterococcus faecium TX0082] Length = 187 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 20/168 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V++ + ++ + ++L MLE + ++ G+GLAA Q Sbjct: 6 DIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 + + R++ + + + V NPKI++ S D EGCLS+ + V Sbjct: 66 LDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173 >gi|241896030|ref|ZP_04783326.1| peptide deformylase [Weissella paramesenteroides ATCC 33313] gi|241870761|gb|EER74512.1| peptide deformylase [Weissella paramesenteroides ATCC 33313] Length = 195 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 28/178 (15%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V D +LR + +E ++ ++ NM+E + + G+GLAA Q Sbjct: 6 EIVRDGDKVLRERAAKVEFPLSDEVKEASKNMMEYLVVSQDEKENEKYGLRPGVGLAAPQ 65 Query: 52 IGVLYRLVVI-----DLQDHAHRKN-------PMVFINPKIITFSDDF--SVYQEGCLSI 97 +G+ + I D+++ +K NP I S EGCLS+ Sbjct: 66 VGISQQFTSILIPSDDVEELQDKKTTDSDYFFKGTIYNPVITRQSVKKGALSMGEGCLSV 125 Query: 98 P-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D V RS ITV++ D N Q + +G A QHE+DHL+G L+ DH+++ + Sbjct: 126 DNDLPGYVARSYRITVKFQDENGDKQELRLEGYPAIVFQHEIDHLHGTLYYDHINKTE 183 >gi|290562011|gb|ADD38403.1| Peptide deformylase, mitochondrial [Lepeophtheirus salmonis] Length = 247 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 18/161 (11%) Query: 6 LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DPILR I E I ++ D +L V+ D +G++A QIG + + Sbjct: 41 VVQIGDPILRGKVEEIPLSEIKTPFINSIADKLLHVLKKYDAVGVSAPQIGTPIAMFAVG 100 Query: 63 L---------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + P V INP+I S ++EGC S+ + A V R Sbjct: 101 FTKSQIKSWSTETVAKEGMEPIDPPRVVINPRIDIIDSSSSTHREGCCSLYGFSAQVARY 160 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + ++ + + + A A +QHE+DHL+G LFID Sbjct: 161 RKVLLKGYNIHGEAFEWLATDWTARIIQHEMDHLSGKLFID 201 >gi|19746868|ref|NP_608004.1| peptide deformylase [Streptococcus pyogenes MGAS8232] gi|25452912|sp|Q8NZB7|DEF_STRP8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|19749109|gb|AAL98503.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232] Length = 204 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ +P LR V++ + + + + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 I V R++ + + + NP V NPKI++ S D EGCLS+ Sbjct: 78 IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y D Q I G A +QHE+DH+NGILF D ++ Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGILFYDRINAKNPFETK 197 Query: 160 KKM 162 +++ Sbjct: 198 EEL 200 >gi|56808716|ref|ZP_00366436.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes M49 591] gi|209560096|ref|YP_002286568.1| peptide deformylase [Streptococcus pyogenes NZ131] gi|238058214|sp|B5XIL1|DEF_STRPZ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|209541297|gb|ACI61873.1| Peptide deformylase [Streptococcus pyogenes NZ131] Length = 204 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ +P LR V++ + + + + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQNPVMAEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 I V R++ + + + NP V NPKI++ S D EGCLS+ Sbjct: 78 IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y D Q I G A +QHE+DH+NG+LF D ++ Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKNPFETK 197 Query: 160 KKM 162 +++ Sbjct: 198 EEL 200 >gi|294786544|ref|ZP_06751798.1| peptide deformylase [Parascardovia denticolens F0305] gi|294485377|gb|EFG33011.1| peptide deformylase [Parascardovia denticolens F0305] Length = 234 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 27/174 (15%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR + P + ++ + ++L+ M + M + G+GLA QIG+ + V++ Sbjct: 30 PIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVVE 89 Query: 63 ------------------------LQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSI 97 P I NP D+ + + EGCLS Sbjct: 90 DHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCLSF 149 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+A KR I + D A QHE DHL+G ++ID Sbjct: 150 DGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYIDKAE 203 >gi|56416555|ref|YP_153629.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries] gi|222474923|ref|YP_002563338.1| Peptide deformylase [Anaplasma marginale str. Florida] gi|56387787|gb|AAV86374.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries] gi|222419059|gb|ACM49082.1| Peptide deformylase [Anaplasma marginale str. Florida] Length = 196 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 16/158 (10%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------- 63 +L+ S PIEK++ +++ L+D M +V+ ++ +G +A+Q+GV R+ I++ Sbjct: 15 VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 74 Query: 64 ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116 H+ N +V +NP+I++FS + V EGCLS Y + R + ++Y D Sbjct: 75 DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 134 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +I A LA C+QHE+DHLNG+L + + ++ Sbjct: 135 LMGNECVIRAYNWLARCIQHEMDHLNGVLLANLVDNIR 172 >gi|225867820|ref|YP_002743768.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus] gi|259645185|sp|C0MFA6|DEF_STRS7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225701096|emb|CAW97934.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus] Length = 204 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ +P LR V++ +E ++ D + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 I V R++ + + NP V NPKI++ S D EGCLS+ Sbjct: 78 IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y D + + I G A +QHE+DH+NG+LF D ++ K Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKKPFEAK 197 Query: 160 KKM 162 + M Sbjct: 198 EGM 200 >gi|315226122|ref|ZP_07867910.1| peptide deformylase [Parascardovia denticolens DSM 10105] gi|315120254|gb|EFT83386.1| peptide deformylase [Parascardovia denticolens DSM 10105] Length = 244 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 27/174 (15%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR + P + ++ + ++L+ M + M + G+GLA QIG+ + V++ Sbjct: 40 PIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVVE 99 Query: 63 ------------------------LQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSI 97 P I NP D+ + + EGCLS Sbjct: 100 DHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCLSF 159 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+A KR I + D A QHE DHL+G ++ID Sbjct: 160 DGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYIDKAE 213 >gi|253581454|ref|ZP_04858679.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725] gi|251836524|gb|EES65059.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725] Length = 161 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 12/165 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYS-----TDGIGLAAVQIGVL 55 +KK +++ + L ++S P++K +I ++ N+ + + G +AA QIGV Sbjct: 1 MKKEILLLGNEELYQISEPLKKDEIENIKFIVQNLHDTLLDFREKYHAGRAIAAPQIGVK 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + + P++FINP + D+ + C+S P+ VKR ++Y+ Sbjct: 61 KRLLYMFID------KPVIFINPVLEFPDDEMMEVLDDCMSFPNLLVKVKRYKRCRIKYL 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + + Q + +G LA LQHE DHL+GIL K +I K Sbjct: 115 DMDWKEQEMSLEGDLAELLQHEYDHLDGILATMRAIDNKSFVIKK 159 >gi|306832702|ref|ZP_07465839.1| peptide deformylase [Streptococcus bovis ATCC 700338] gi|304425158|gb|EFM28287.1| peptide deformylase [Streptococcus bovis ATCC 700338] Length = 204 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + ML E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDEEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 + + R++ + + + + NP V NPK++ S D EGCLS+ Sbjct: 78 LDISKRIIAVLVPNPEDKDGNPPKDAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R + +TV Y D N + I G + +QHE+DH NGI+F D + I Sbjct: 138 VEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRIDEKNPFAIK 197 Query: 160 KKM 162 K M Sbjct: 198 KGM 200 >gi|227550841|ref|ZP_03980890.1| peptide deformylase [Enterococcus faecium TX1330] gi|257887905|ref|ZP_05667558.1| peptide deformylase [Enterococcus faecium 1,141,733] gi|257893294|ref|ZP_05672947.1| peptide deformylase [Enterococcus faecium 1,231,408] gi|257896477|ref|ZP_05676130.1| peptide deformylase [Enterococcus faecium Com12] gi|293379255|ref|ZP_06625401.1| peptide deformylase [Enterococcus faecium PC4.1] gi|227179939|gb|EEI60911.1| peptide deformylase [Enterococcus faecium TX1330] gi|257823959|gb|EEV50891.1| peptide deformylase [Enterococcus faecium 1,141,733] gi|257829673|gb|EEV56280.1| peptide deformylase [Enterococcus faecium 1,231,408] gi|257833042|gb|EEV59463.1| peptide deformylase [Enterococcus faecium Com12] gi|292642051|gb|EFF60215.1| peptide deformylase [Enterococcus faecium PC4.1] Length = 187 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 20/168 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V+ + ++ + ++L MLE + ++ G+GLAA Q Sbjct: 6 DIIREGNPTLREVAEEVSLPLSEEDLSLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 + + R++ + + + V NPKI++ S D EGCLS+ + V Sbjct: 66 LDISKRIIAVHVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173 >gi|257899443|ref|ZP_05679096.1| peptide deformylase [Enterococcus faecium Com15] gi|293573058|ref|ZP_06683999.1| peptide deformylase [Enterococcus faecium E980] gi|257837355|gb|EEV62429.1| peptide deformylase [Enterococcus faecium Com15] gi|291606877|gb|EFF36258.1| peptide deformylase [Enterococcus faecium E980] Length = 187 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 20/168 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V+ + ++ + ++L MLE + ++ G+GLAA Q Sbjct: 6 DIIREGNPTLREVAEEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104 + + R++ + + + V NPKI++ S D EGCLS+ + V Sbjct: 66 LDISKRIIAVHVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173 >gi|159040197|ref|YP_001539450.1| formylmethionine deformylase [Salinispora arenicola CNS-205] gi|157919032|gb|ABW00460.1| formylmethionine deformylase [Salinispora arenicola CNS-205] Length = 187 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 6/153 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61 + ++ P +L R ++ + + L +++ M + G +GLAA QIGV R+ + Sbjct: 23 VRQVLSAPATVLSRAGGDVDPTAEETVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAV 82 Query: 62 DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MDC 117 D+ HA V N ++ S + V +EGC+S+PD DVKR+ + V + Sbjct: 83 DVTGHAKAAIVHGAFVLCNAVVVAAS-RWKVGREGCMSVPDLTGDVKRAGQLVVEGELPA 141 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + + A LQHE+DH G+LF+D + Sbjct: 142 TGKAVRLVTNAFEARALQHEIDHCAGLLFLDRV 174 >gi|170017441|ref|YP_001728360.1| peptide deformylase [Leuconostoc citreum KM20] gi|169804298|gb|ACA82916.1| peptide deformylase [Leuconostoc citreum KM20] Length = 195 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 29/180 (16%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43 M + + DP+LR+VS + ++ + L +M+ E Sbjct: 1 MTIRFTMDKITRDGDPVLRQVSTAVPFPLSEEHAQLAQDMMTYLVVSQDEEENEKYGLRP 60 Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN---------PMVFINPKIITFSDDFSVYQ--E 92 G+GLAA Q+G ++ I + + NP II+ S S E Sbjct: 61 GVGLAAPQVGYSLQMTSILIPALETHEQDEQDDKPYFKGTIFNPVIISESVKRSALNVGE 120 Query: 93 GCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 GCLS+ D V R+ ITVRY D + + A QHE+DHL+G L+ DH++ Sbjct: 121 GCLSVDEDVPGFVPRANRITVRYQDETGATKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 180 >gi|157150181|ref|YP_001449640.1| peptide deformylase [Streptococcus gordonii str. Challis substr. CH1] gi|189083079|sp|A8AV30|DEF_STRGC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157074975|gb|ABV09658.1| polypeptide deformylase [Streptococcus gordonii str. Challis substr. CH1] Length = 204 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 25/184 (13%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 + ++ +P LR V+ + + + + L + M++ ++++ G+GLAA Sbjct: 17 RDIIREGNPTLRAVAEEVSFPLADEDILLGEKMMQFLHNSQDPVMAEKLGLRGGVGLAAP 76 Query: 51 QIGVLYRLVVIDLQDHAHRKN---------PMVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + R++ + L + V NPKI+ S D EGCLS+ Sbjct: 77 QLDISRRIIAVLLPNPEDENGNSPQEAYALKEVMYNPKIVAHSVQDAALADGEGCLSVDR 136 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 D V R A +TV Y D N + + G A +QHE+DH+NGI+F D ++ I Sbjct: 137 DVPGYVVRHARVTVDYFDKNGEKHRVKLKGYKAIVVQHEIDHINGIMFYDRINETDPFAI 196 Query: 159 TKKM 162 + M Sbjct: 197 KEGM 200 >gi|78776817|ref|YP_393132.1| formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251] gi|78497357|gb|ABB43897.1| Formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251] Length = 283 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 5/162 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K +V +P P + + + N +I +LI+++ + + + LAA QIG + +VV+ Sbjct: 20 MIKEIVTYPTPPSVQYATDVRVFNEEIESLIEDLKDTIKANSLEALAAFQIGSYFNIVVV 79 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + INP+II + ++ P+ A+V R I++ Y D Q Sbjct: 80 AQDG----GEFLELINPRIINPHGRVTTIEKTAY-FPNLSAEVTRYETISLVYQDRELQQ 134 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + ADG + LQ ++D+ G F++ L+++++ + KK+ Sbjct: 135 HSLKADGAFSILLQRKVDYTFGSTFLNKLNKVEKKLFQKKLE 176 >gi|169404549|pdb|2OS3|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E. Faecalis And S. Pyogenes Length = 205 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ +P LR V++ + + + + L + M++ + + G+GLAA Q Sbjct: 17 DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 76 Query: 52 IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 I V R++ + + + NP V NPKI++ S D EGCLS+ Sbjct: 77 IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 136 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y D Q I G A +QHE+DH+NG+LF D ++ Sbjct: 137 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKNPFETK 196 Query: 160 KKM 162 +++ Sbjct: 197 EEL 199 >gi|324992462|gb|EGC24383.1| peptide deformylase [Streptococcus sanguinis SK405] gi|327472415|gb|EGF17846.1| peptide deformylase [Streptococcus sanguinis SK408] gi|327488768|gb|EGF20567.1| peptide deformylase [Streptococcus sanguinis SK1058] Length = 210 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR V+ + + +M + + M E M G+GLAA Sbjct: 23 KDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + RL+ + + NP + NPKI+ S D EGCLS+ Sbjct: 83 QLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|15675756|ref|NP_269930.1| peptide deformylase [Streptococcus pyogenes M1 GAS] gi|21911220|ref|NP_665488.1| peptide deformylase [Streptococcus pyogenes MGAS315] gi|28896598|ref|NP_802948.1| peptide deformylase [Streptococcus pyogenes SSI-1] gi|50915023|ref|YP_060995.1| peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71904319|ref|YP_281122.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71911482|ref|YP_283032.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94989300|ref|YP_597401.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94991246|ref|YP_599346.1| peptide deformylase [Streptococcus pyogenes MGAS10270] gi|94993189|ref|YP_601288.1| peptide deformylase [Streptococcus pyogenes MGAS2096] gi|94995159|ref|YP_603257.1| peptide deformylase [Streptococcus pyogenes MGAS10750] gi|139474444|ref|YP_001129160.1| peptide deformylase [Streptococcus pyogenes str. Manfredo] gi|306826604|ref|ZP_07459909.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] gi|56748620|sp|Q5X9V1|DEF_STRP6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56749812|sp|P68772|DEF_STRP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62901513|sp|P68771|DEF_STRP1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122986892|sp|Q1J9R7|DEF_STRPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123257906|sp|Q1JEV7|DEF_STRPD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123258119|sp|Q1JJW6|DEF_STRPC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123382136|sp|Q1J4M3|DEF_STRPF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123761380|sp|Q48R93|DEF_STRPM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512785|sp|A2RGI0|DEF_STRPG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|13622977|gb|AAK34651.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS] gi|21905433|gb|AAM80291.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315] gi|28811852|dbj|BAC64781.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1] gi|50904097|gb|AAT87812.1| Peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71803414|gb|AAX72767.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71854264|gb|AAZ52287.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94542808|gb|ABF32857.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94544754|gb|ABF34802.1| Peptide deformylase [Streptococcus pyogenes MGAS10270] gi|94546697|gb|ABF36744.1| Peptide deformylase [Streptococcus pyogenes MGAS2096] gi|94548667|gb|ABF38713.1| Peptide deformylase [Streptococcus pyogenes MGAS10750] gi|134272691|emb|CAM30962.1| polypeptide deformylase [Streptococcus pyogenes str. Manfredo] gi|304431182|gb|EFM34186.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] Length = 204 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ +P LR V++ + + + + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 I V R++ + + + NP V NPKI++ S D EGCLS+ Sbjct: 78 IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y D Q I G A +QHE+DH+NG+LF D ++ Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKNPFETK 197 Query: 160 KKM 162 +++ Sbjct: 198 EEL 200 >gi|54296635|ref|YP_123004.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris] gi|53750420|emb|CAH11814.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris] Length = 229 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 14 LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---- 68 L+ + I+ +N + +LI+ M + +Y+ G+GLAA Q+ +++ + + + A Sbjct: 46 LKTRAENIQFPLNREDQDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 105 Query: 69 --RKNPM-VFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + PM + INP + EGC S+ V R I ++Y D Sbjct: 106 NAKIYPMHILINPNYEPLPQARIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQ 165 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G A LQHE+DHLNG+L D L+ D + + +++ +R Sbjct: 166 IENGFYARVLQHEIDHLNGVLITDRLTP---DCVQGTIEEMMTIR 207 >gi|325279635|ref|YP_004252177.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] gi|324311444|gb|ADY31997.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] Length = 220 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 33/172 (19%) Query: 14 LRRVSRPIE--KINSDIMNLI-DNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAH 68 LR+ + + +I +++ ++ ML + + G+G+AA Q+G+ RL+ + D Sbjct: 50 LRQQAIELTPGEIRTELFQVLKQRMLATVNDSADPGVGIAAPQVGISRRLIAVQRYDKPG 109 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC----------- 117 +INP I++ S++ S+ +EGCLS+PD +V RS I VRY+ Sbjct: 110 APFEF-YINPGIVSASEEQSLGKEGCLSVPDVVGEVWRSNEIVVRYIPELTSIKRMLSRE 168 Query: 118 ----------------NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + G A QHE+DHLNGILF D + + Sbjct: 169 KTDSTFKFEVKVEYRNTWEPVCDTIRGFTAVIFQHEIDHLNGILFTDKMIKE 220 >gi|325688984|gb|EGD30992.1| peptide deformylase [Streptococcus sanguinis SK115] Length = 210 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 23 KDIIREGNPTLRAIAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + RL+ + + NP + NPKI+ S D EGCLS+ Sbjct: 83 QLNISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|323341737|ref|ZP_08081970.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464162|gb|EFY09355.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 190 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 21/179 (11%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +V+ P+P+LR P+ ++ + N ++NML+ + + G+AA QI Sbjct: 9 IVLDPNPVLREKCEPVSFPLSEEDRNTLENMLQYVRDSRDPELAEKYNLQPANGIAAPQI 68 Query: 53 GVLYRL--VVIDLQDHAH--RKNPMVFINPKIITFSDDFSV--YQEGCLSI-PDYRADVK 105 GV ++ +V+DL+D + +NPKI++ S Y EGCLSI DY V+ Sbjct: 69 GVAKQMTALVVDLEDKHGNVKTVEYALVNPKIVSNSVKQCALSYGEGCLSIRKDYPGLVR 128 Query: 106 RSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 RS I V D Q I A +LA LQHE+DHLNG+LF DH+ M K + Sbjct: 129 RSQRIKVLAYDMITDQRIEIVAKDILAIVLQHEIDHLNGVLFYDHIDSKDPWMAEKGLK 187 >gi|257866651|ref|ZP_05646304.1| peptide deformylase [Enterococcus casseliflavus EC30] gi|257872832|ref|ZP_05652485.1| peptide deformylase [Enterococcus casseliflavus EC10] gi|257876255|ref|ZP_05655908.1| peptide deformylase [Enterococcus casseliflavus EC20] gi|257800609|gb|EEV29637.1| peptide deformylase [Enterococcus casseliflavus EC30] gi|257806996|gb|EEV35818.1| peptide deformylase [Enterococcus casseliflavus EC10] gi|257810421|gb|EEV39241.1| peptide deformylase [Enterococcus casseliflavus EC20] Length = 187 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 20/167 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V++ + ++ + + L M+ E + G+GLAA Q Sbjct: 6 DIIREGNPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQ----DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADV 104 + + R+ + + + V NPKI++ S + EGCLS+ + V Sbjct: 66 LDISKRITAVLVPSSDPEKTEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A IT+ Y D N + + + A +QHE+DHLNG++F DH++ Sbjct: 126 VRHARITISYYDINGKKKKVRLKNYPAIVVQHEIDHLNGVMFYDHIN 172 >gi|171778809|ref|ZP_02919871.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282455|gb|EDT47879.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 204 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR++ + ++ + + L + M+ E M G+GLAA Q Sbjct: 18 DIIREGHPTLRKICDDVTFPLSDEEIILGEKMMQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 + V R++ + + + + NP V NPK++ S D EGCLS+ Sbjct: 78 LNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R + +TV Y D N + I G + +QHE+DH NGI+F D ++ Sbjct: 138 VEGYVVRHSRVTVEYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRINE 190 >gi|160943037|ref|ZP_02090275.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii M21/2] gi|158445731|gb|EDP22734.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii M21/2] Length = 136 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + +P+ DP+ L + S P ++ + +L+D + ++ +G+AA IGV R++ Sbjct: 1 MIQPI--MHDPLFLAQKSAPATPEDAPVARDLLDTL--TAHADGCVGMAANMIGVRKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +D +V NP I+ S + +EGCLS+ R KR I V+Y + Sbjct: 57 AVEAED-----GYLVLFNPVILKKSGQYEA-EEGCLSLEGVR-KTKRWQSIKVQYQTMDG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + +I G A +QHE+DH +GIL Sbjct: 110 KLRIKTFTGWTAQIIQHEIDHCDGILI 136 >gi|332884559|gb|EGK04817.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836] Length = 190 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 12/159 (7%) Query: 14 LRRVSRPIEK----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 LR+ S ++ N D+ LID + + G+G+AA Q+G+ L + D Sbjct: 32 LRKKSIDLDAKNIATNKDLQLLIDRLQMTLAVESGVGIAAPQVGIGRNLFLFLRIDQKGM 91 Query: 70 KNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V INP+I+ S + +++ +GCLS+P+ R ++ V Y D N G Sbjct: 92 PV-QVAINPRIVGHSAETFLFERDGCLSVPELSGTTNRYTWVDVEYYDDNGTLIKERLSG 150 Query: 129 ------LLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 QHE DHL GILF D L+ + K+ Sbjct: 151 GSRGGDFTGVIFQHEYDHLQGILFTDRLASAVSPKLQKE 189 >gi|307702174|ref|ZP_07639134.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|307624187|gb|EFO03164.1| peptide deformylase [Streptococcus oralis ATCC 35037] Length = 203 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + V NPKI++ S + EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 189 >gi|15892003|ref|NP_359717.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] gi|157827954|ref|YP_001494196.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932642|ref|YP_001649431.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|238650519|ref|YP_002916371.1| peptide deformylase [Rickettsia peacockii str. Rustic] gi|15619118|gb|AAL02618.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] gi|157800435|gb|ABV75688.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907729|gb|ABY72025.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|238624617|gb|ACR47323.1| peptide deformylase [Rickettsia peacockii str. Rustic] Length = 224 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 17/171 (9%) Query: 11 DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--- 63 D +R ++ P+ + +++++ + + GLAA QIG+ +++ + Sbjct: 47 DKTIRIKAKTLNFPLSSEDLRDISILEKKYD--QEENCAGLAAPQIGISKCIIIFAVHED 104 Query: 64 -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D ++INP D EGC S+ + V R I D Sbjct: 105 AELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYD 164 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N A+G LA +QHE+DHLNG +F+D+++ K+ M ++ ++ + Sbjct: 165 INGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214 >gi|262281961|ref|ZP_06059730.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA] gi|262262415|gb|EEY81112.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA] Length = 204 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 25/184 (13%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K ++ +P LR V+ + + + + L + M++ ++++ G+GLAA Sbjct: 17 KDIIREGNPTLRAVAEEVSFPLADEDILLGEKMMQFLHNSQDPVMAEKLGLRGGVGLAAP 76 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + R++ + L NP V NPKI+ S D EGCLS+ Sbjct: 77 QLDISRRIIAVLLPNPEDENGNPPQDAYALKEVMYNPKIVAHSVQDAALADGEGCLSVDR 136 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 D V R A +TV Y D + + + G A +QHE+DH+NGI+F D ++ I Sbjct: 137 DVPGYVVRHARVTVDYFDKDGEKHRVKLKGYKAIVVQHEIDHINGIMFYDRINETDPFAI 196 Query: 159 TKKM 162 + M Sbjct: 197 KEGM 200 >gi|33357292|pdb|1LM4|A Chain A, Structure Of Peptide Deformylase From Staphylococcus Aureus At 1.45 A gi|33357293|pdb|1LM4|B Chain B, Structure Of Peptide Deformylase From Staphylococcus Aureus At 1.45 A Length = 194 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR+ + +E + + + M E + ++ G+GLA Sbjct: 14 TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 73 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104 A QI + R++ + + D + + +NPKI++ S + + EG LS+ D V Sbjct: 74 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLV 133 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 134 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 181 >gi|322374579|ref|ZP_08049093.1| peptide deformylase [Streptococcus sp. C300] gi|321280079|gb|EFX57118.1| peptide deformylase [Streptococcus sp. C300] Length = 203 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + V NPKI++ S + EGCLS+ + Sbjct: 78 LDISKRVIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 189 >gi|225871270|ref|YP_002747217.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047] gi|254767601|sp|C0M9E1|DEF_STRE4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225700674|emb|CAW95260.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047] Length = 204 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ +P LR V++ +E ++ D + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 I V R++ + + NP V NPKI++ S D EGCLS+ Sbjct: 78 IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G A +QHE+DH+NG+LF D ++ Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189 >gi|213618841|ref|ZP_03372667.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 103 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 43/106 (40%), Positives = 73/106 (68%), Gaps = 3/106 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 ID+ + +R +V INP+++ S + + +EGCLSIP+ RA V R Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPR 103 >gi|325686575|gb|EGD28601.1| peptide deformylase [Streptococcus sanguinis SK72] Length = 210 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 23 KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + R++ + + NP + NPKI+ S D EGCLS+ Sbjct: 83 QLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|293365121|ref|ZP_06611838.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|291316571|gb|EFE57007.1| peptide deformylase [Streptococcus oralis ATCC 35037] Length = 208 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 23 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + V NPKI++ S + EGCLS+ + Sbjct: 83 LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 142 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 194 >gi|259500700|ref|ZP_05743602.1| peptide deformylase [Lactobacillus iners DSM 13335] gi|312871379|ref|ZP_07731474.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a] gi|259168084|gb|EEW52579.1| peptide deformylase [Lactobacillus iners DSM 13335] gi|311093032|gb|EFQ51381.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a] Length = 181 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 +V + +LR+V + + +N L ++M++ + ++ G+GLAA Q Sbjct: 3 DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 62 Query: 52 IGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107 +G ++ + + D + F+NPKII+ S + EGCLS+ D + V R+ Sbjct: 63 VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 122 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 123 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 167 >gi|172058021|ref|YP_001814481.1| peptide deformylase [Exiguobacterium sibiricum 255-15] gi|171990542|gb|ACB61464.1| peptide deformylase [Exiguobacterium sibiricum 255-15] Length = 179 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 17/166 (10%) Query: 5 PLVIFPDPILRRVSRPIE----KINSDIMNLI---------DNMLEVMYSTDGIGLAAVQ 51 +V P L S + + + + M L+ D + E GIGLAA Q Sbjct: 6 EIVREDVPSLHERSVDVTFPLSEEDKETMRLMMEYLANSQDDELAEKYDLRSGIGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108 IGV R+ I LQD ++ NPKI++ S + + EGCLS+ + V R Sbjct: 66 IGVNKRMFAIRLQDGDDILEFGIY-NPKIVSHSVEQTYLAGGEGCLSVDREVEGHVPRYM 124 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 IT+ +D N + GL A QHE DHL+GI+F D + + Sbjct: 125 RITLSGIDHNGNPVKLRLKGLKAVVCQHEYDHLDGIMFYDRIDPKE 170 >gi|288904432|ref|YP_003429653.1| polypeptide deformylase [Streptococcus gallolyticus UCN34] gi|306830465|ref|ZP_07463635.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977428|ref|YP_004287144.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731157|emb|CBI12705.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34] gi|304427490|gb|EFM30592.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177356|emb|CBZ47400.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 204 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + ML E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDEEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 + + R++ + + + + NP V NPK++ S D EGCLS+ Sbjct: 78 LDISKRIIAVLVPNPEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R + +TV Y D N + I G + +QHE+DH NGI+F D + I Sbjct: 138 VEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRIDEKNPFAIK 197 Query: 160 KKM 162 + M Sbjct: 198 EGM 200 >gi|125718849|ref|YP_001035982.1| peptide deformylase [Streptococcus sanguinis SK36] gi|125498766|gb|ABN45432.1| Peptide deformylase, putative [Streptococcus sanguinis SK36] gi|324996009|gb|EGC27920.1| peptide deformylase [Streptococcus sanguinis SK678] Length = 210 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 23 KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + RL+ + + NP + NPKI+ S D EGCLS+ Sbjct: 83 QLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|68171495|ref|ZP_00544878.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88657592|ref|YP_507728.1| putative polypeptide deformylase [Ehrlichia chaffeensis str. Arkansas] gi|67999078|gb|EAM85746.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88599049|gb|ABD44518.1| putative polypeptide deformylase [Ehrlichia chaffeensis str. Arkansas] Length = 194 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 16/161 (9%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63 L +S PIEKI+ +I+ L ++M++VM + +GL+AVQ+G R+ +I++ Sbjct: 15 LHAISHPIEKIDQEIIALANDMMKVMEHSKTVGLSAVQLGNHSRMFIINMFSGLFDIAQD 74 Query: 64 -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDC 117 H+ M+ INP++++FS + EGC S Y ++ R + +RY D Sbjct: 75 IKVLSGHHSLHGKNMICINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDLRYTDL 134 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I+ G L+ C+QHELDHLNGIL + + +K + + Sbjct: 135 LGNECIVRVYGWLSRCIQHELDHLNGILLANVVDNIKNNCV 175 >gi|66806299|ref|XP_636872.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4] gi|60465273|gb|EAL63366.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4] Length = 243 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 55/204 (26%) Query: 4 KPLVIFPDPILRRVSRPI--EKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 K +V + +LR + P E++N + L++ M + M G G+AA QIGV +L Sbjct: 8 KNIVKVGNKLLREKALPWSKEELNDVRRVEKLLEKMYKEMKDCTGTGIAAPQIGVNKQLF 67 Query: 60 VIDLQDHAHRKNP----MVFINPKI----------------------------------- 80 +++L P F NPKI Sbjct: 68 LLELPSQEGLNCPNFPLTAFFNPKIKLIDQDVTKPSRRTITDFKKFLHGSEKLLNLSQYK 127 Query: 81 ------------ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 I ++ E CLS+P+ A V+RS + ++D + +II ADG Sbjct: 128 TKFQTEESTLPTIPTENNTITMLESCLSVPNIFAHVQRSKRCIITFLDITGKERIIEADG 187 Query: 129 LLATCLQHELDHLNGILFIDHLSR 152 +LA C QHE DHL G +FID + + Sbjct: 188 ILAACFQHEYDHLLGKIFIDRIDK 211 >gi|309807220|ref|ZP_07701192.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b] gi|308166358|gb|EFO68565.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b] Length = 184 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQI 52 +V + +LR+V + + +N L ++M++ + ++ G+GLAA Q+ Sbjct: 7 IVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQV 66 Query: 53 GVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108 G ++ + + D + F+NPKII+ S + EGCLS+ D + V R+ Sbjct: 67 GESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAY 126 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 127 KLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|308070801|ref|YP_003872406.1| peptide deformylase (PDF) [Paenibacillus polymyxa E681] gi|305860080|gb|ADM71868.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681] Length = 193 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K +V +PILR P+ ++ D + + ML+ + ++ G+GL+A Sbjct: 12 KDIVREGEPILRTKVDPVCLPLSEDDLQQMQWMLDYLKNSQNEELAGRYDLRPGVGLSAN 71 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRA-DVKRS 107 Q+G+ R+ I +D +F NPK+++ S + EGCLS+ Y A V R Sbjct: 72 QVGLNKRMCAIYYEDGDKTVEYALF-NPKLVSHSTSMIYLEQGEGCLSVDRYVAGYVPRY 130 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I ++ + +++ G A +QHE+DHL+GI+F D ++ Sbjct: 131 EKIRIKATLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRINPE 176 >gi|320547748|ref|ZP_08042032.1| peptide deformylase [Streptococcus equinus ATCC 9812] gi|320447508|gb|EFW88267.1| peptide deformylase [Streptococcus equinus ATCC 9812] Length = 204 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR+V + ++ + + L + M+ E M G+GLAA Q Sbjct: 18 DIIREGHPTLRQVCDDVTFPLSDEEIILGEKMMQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 + V R++ + + + + NP V NPK++ S D EGCLS+ Sbjct: 78 LNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R + +TV Y + N + + G + +QHE+DH NGI+F D + Sbjct: 138 VEGYVVRHSRVTVEYFNKNGEKHRVKLKGYNSIVVQHEIDHTNGIMFYDRIDE 190 >gi|324989743|gb|EGC21686.1| peptide deformylase [Streptococcus sanguinis SK353] gi|327468374|gb|EGF13859.1| peptide deformylase [Streptococcus sanguinis SK330] Length = 210 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 23 KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPIMAEKMGLRGGVGLAAP 82 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + RL+ + + NP + NPKI+ S D EGCLS+ Sbjct: 83 QLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|300854965|ref|YP_003779949.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300435080|gb|ADK14847.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 160 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 12/166 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYS-----TDGIGLAAVQIGVL 55 + K +++ + L + S P+EK + I + ++ + + G +AA QIGV Sbjct: 1 MIKEILLLGNDALYKKSLPVEKEDMDSIKETVLDLHDTLIDFRKKYNAGRAIAAPQIGVF 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + + P+VFINP + + + + C+S P+ VKR ++ Y Sbjct: 61 KRLIYMYID------KPIVFINPVLKFDNKEMMDVMDDCMSFPNLLVKVKRYKECSIIYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 D N + + G L+ +QHE DHL+GIL K I K Sbjct: 115 DINFADKTLKFKGDLSELIQHEYDHLDGILATMRAIDNKSFYIKSK 160 >gi|315612890|ref|ZP_07887801.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] gi|315315000|gb|EFU63041.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] Length = 208 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 23 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + V NPKI++ S + EGCLS+ + Sbjct: 83 LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 142 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 143 PGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 194 >gi|328944870|gb|EGG39030.1| peptide deformylase [Streptococcus sanguinis SK1087] Length = 210 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 23 KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNPM--------VFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + RL+ + + NP + NPKI+ S D EGCLS+ Sbjct: 83 QLDISKRLIAVLVPNPEDEEGNPTKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|309807903|ref|ZP_07701833.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a] gi|308168852|gb|EFO70940.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a] Length = 184 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 +V + +LR+V + + +N L ++M++ + ++ G+GLAA Q Sbjct: 6 DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107 +G ++ + + D + F+NPKII+ S + EGCLS+ D + V R+ Sbjct: 66 VGESVQVAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|302672051|ref|YP_003832011.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316] gi|302396524|gb|ADL35429.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316] Length = 136 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + K +V DP L++ S P + + +I ++L+ + + +G+AA IGV R+ Sbjct: 1 MVKQIVK--DPFFLQQKSEPATEAD---KQVIQDLLDTLRANQDRCVGMAANMIGVKKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + +NP+I S ++ +E CLS+ R R I V Y+D + Sbjct: 56 IVVAMGPFH-----FAMVNPEITKKSGEYQT-EESCLSLEGVR-PCTRYKEIEVDYLDQD 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q A +QHE+DH GIL Sbjct: 109 FKPQHGKYKDFTAQIIQHEIDHFEGILI 136 >gi|329921309|ref|ZP_08277747.1| peptide deformylase [Lactobacillus iners SPIN 1401G] gi|328934601|gb|EGG31105.1| peptide deformylase [Lactobacillus iners SPIN 1401G] Length = 184 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 +V + +LR+V + + +N L ++M++ + ++ G+GLAA Q Sbjct: 6 DIVRDGNHVLRQVGKELTFPLNDKYKQLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107 +G ++ + + D + F+NPKII+ S + EGCLS+ D + V R+ Sbjct: 66 VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|195978856|ref|YP_002124100.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689838|sp|B4U576|DEF_STREM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|195975561|gb|ACG63087.1| peptide deformylase Pdf [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 204 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ +P LR V++ +E ++ D + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 I V R++ + + NP V NPKI++ S D EGCLS+ Sbjct: 78 IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G A +QHE+DH+NG+LF D ++ Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189 >gi|34580961|ref|ZP_00142441.1| polypeptide deformylase [Rickettsia sibirica 246] gi|28262346|gb|EAA25850.1| polypeptide deformylase [Rickettsia sibirica 246] Length = 224 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 17/171 (9%) Query: 11 DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--- 63 D +R ++ P+ + +++++ + + GLAA QIG+ +++ + Sbjct: 47 DKTIRIKAKTLNFPLSSEDLRDISILEKKYD--QEDNCAGLAAPQIGISKCIIIFAVHED 104 Query: 64 -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D ++INP D EGC S+ + V R I D Sbjct: 105 AELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYD 164 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N A+G LA +QHE+DHLNG +F+D+++ K+ M ++ ++ + Sbjct: 165 INGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214 >gi|320169511|gb|EFW46410.1| polypeptide deformylase [Capsaspora owczarzaki ATCC 30864] Length = 196 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + L+ + LR SR + +S LID M+ M T+G+G+AAVQ+G + Sbjct: 19 RGLLAIGEDSLRLPSRQVSLDELRSSATQALIDRMIATMRRTEGVGIAAVQLGDNRAIAC 78 Query: 61 IDLQ--------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 I+ V +NP+++ S D EGCLS+P +A V R Sbjct: 79 IEFTAKHLAEATPEMAATHKMEAVPLTVMVNPRVLRASSDLVEGAEGCLSVPGMQAIVFR 138 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + +D N Q + G A HE+DHL G LF D + R Sbjct: 139 PRHVAIDCLDRNGAPQTLKLSGWSARIAMHEVDHLKGELFTDKMER 184 >gi|332365804|gb|EGJ43561.1| peptide deformylase [Streptococcus sanguinis SK355] Length = 210 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 23 KDIIREGNPTLRAIAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + RL+ + + NP + NPKI+ S D EGCLS+ Sbjct: 83 QLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|332365599|gb|EGJ43359.1| peptide deformylase [Streptococcus sanguinis SK1059] Length = 210 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 23 KDIIREGNPTLRAIAEEVSFPLSDQEIILGKKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + RL+ + + NP + NPKI+ S D EGCLS+ Sbjct: 83 QLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|327462775|gb|EGF09097.1| peptide deformylase [Streptococcus sanguinis SK1057] Length = 210 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 23 KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + RL+ + + NP + NPKI+ S D EGCLS+ Sbjct: 83 QLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|302191390|ref|ZP_07267644.1| peptide deformylase [Lactobacillus iners AB-1] gi|309809281|ref|ZP_07703150.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D] gi|312872368|ref|ZP_07732438.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1] gi|312873953|ref|ZP_07733989.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d] gi|312875523|ref|ZP_07735526.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b] gi|315653465|ref|ZP_07906386.1| peptide deformylase [Lactobacillus iners ATCC 55195] gi|325911485|ref|ZP_08173896.1| peptide deformylase [Lactobacillus iners UPII 143-D] gi|325912854|ref|ZP_08175232.1| peptide deformylase [Lactobacillus iners UPII 60-B] gi|308170394|gb|EFO72418.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D] gi|311089034|gb|EFQ47475.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b] gi|311090502|gb|EFQ48910.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d] gi|311092191|gb|EFQ50565.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1] gi|315489156|gb|EFU78797.1| peptide deformylase [Lactobacillus iners ATCC 55195] gi|325476685|gb|EGC79840.1| peptide deformylase [Lactobacillus iners UPII 143-D] gi|325477847|gb|EGC80981.1| peptide deformylase [Lactobacillus iners UPII 60-B] Length = 184 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 +V + +LR+V + + +N L ++M++ + ++ G+GLAA Q Sbjct: 6 DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107 +G ++ + + D + F+NPKII+ S + EGCLS+ D + V R+ Sbjct: 66 VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|302024517|ref|ZP_07249728.1| peptide deformylase [Streptococcus suis 05HAS68] Length = 155 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 12/140 (8%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFSD 85 M E M G+GLAA QI V R++ + + NP V NPKI+ S Sbjct: 12 MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSV 71 Query: 86 DFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 + + EGCLS+ + + V R A +TV YMD N + I G A +QHE+DHLN Sbjct: 72 QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 131 Query: 143 GILFIDHLSRLKRDMITKKM 162 GI+F D + + + M Sbjct: 132 GIMFYDRIDPEHPFAVKEGM 151 >gi|241667120|ref|ZP_04754698.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875674|ref|ZP_05248384.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841695|gb|EET20109.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 201 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I +S+I N+I M E M +GIGLAA QIG +++ +I+ D ++ Sbjct: 13 NQVLYQKCKPVTDIQSSEIQNIIAEMREKM-QGNGIGLAANQIGYPHQIFMIEF-DSSNA 70 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120 + P+ VFINPKI S+ + GCLS + R + I + + + Sbjct: 71 RYPLNFDSVPFQVFINPKITKASEKRVGFWHGCLSALGGKRGKLATYKEIEYEAYNQHGK 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 131 KITGKLDSIAAVIFQHEFNHLLGSVYVD 158 >gi|38049247|gb|AAR10418.1| putative peptide deformylase [Enterococcus faecium] Length = 160 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 3/113 (2%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DY 100 G+GL+A QIG+ R+ V L D +K+ INPKII+ S EGCLS+ D Sbjct: 35 GVGLSANQIGLNKRMFVAYLTDEKGKKHEYTLINPKIISHSVSMIYLSPSEGCLSVDRDI 94 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + V R I V+ + + ++ G + +QHE+DHLNGI+F + +++ Sbjct: 95 KGFVPRYERIKVKGFNLEGEEIVLKLKGYSSIVIQHEIDHLNGIMFYERINKE 147 >gi|325567244|ref|ZP_08143911.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] gi|325158677|gb|EGC70823.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] Length = 187 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 20/167 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V++ + ++ + + L M+ E + G+GLAA Q Sbjct: 6 DIIREGNPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQ----DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADV 104 + + R+ + + + A V NPKI++ S + EGCLS+ + V Sbjct: 66 LDISKRITAVLVPSSDPEKAEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A IT+ Y D N + + + A +QHE+DHLNG++F +H++ Sbjct: 126 VRHARITISYYDINGKKKKVRLKNYPAIVIQHEIDHLNGVMFYNHIN 172 >gi|229918497|ref|YP_002887143.1| peptide deformylase [Exiguobacterium sp. AT1b] gi|229469926|gb|ACQ71698.1| peptide deformylase [Exiguobacterium sp. AT1b] Length = 179 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 17/166 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ D LR S + ++ + L+D M E G+G+A Sbjct: 3 TMKDVIREGDERLRARSTEVPIPPTAEDLALLDEMETFLVNSQDPEMSEKYELRGGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDY-RADVK 105 A Q+GV R + LQ+ +F NPKI + S + + EGCLS+ + +V Sbjct: 63 APQLGVNRRFFTVLLQEEEETFKLSIF-NPKITSHSVEQTFLNGGEGCLSVDRVVKGNVP 121 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R IT+ D + + + G+ A QHELDHL+GI+F D ++ Sbjct: 122 RFRRITLEGFDRDGKPIKLRLRGMRAVVCQHELDHLDGIMFYDRIN 167 >gi|51247225|pdb|1Q1Y|A Chain A, Crystal Structures Of Peptide Deformylase From Staphylococcus Aureus Complexed With Actinonin Length = 191 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR+ + +E + + + M E + ++ G+GLA Sbjct: 3 TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104 A QI + R++ + + D + + +NPKI++ S + + EG LS+ D V Sbjct: 63 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|77024073|gb|ABA55507.1| chloroplast peptide deformylase [Isochrysis galbana] Length = 200 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P P+LR + + + + L M +MY++ G+GLAA Q+G+ RL+V + + Sbjct: 86 ILEYPHPLLRAPNSEVVSFDDSLRKLTREMFAIMYASRGVGLAAPQLGINKRLMVFNPEG 145 Query: 66 HAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + +V NP+I+ +EGCLS P + ADV R+ +I V + Sbjct: 146 KKEKWMSEVVLCNPRIVERGAGKETDEEGCLSFPGFTADVDRAGWIQVEFQTGRG 200 >gi|52840852|ref|YP_094651.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627963|gb|AAU26704.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 237 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 14 LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---- 68 L+ + I+ ++ + +LI+ M + +Y+ G+GLAA Q+ +++ + + + A Sbjct: 54 LKTRAENIQFPLSREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 113 Query: 69 --RKNPM-VFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + PM + INP + EGC S+ V R I ++Y D Sbjct: 114 NAKIYPMHILINPNYEPLPQARIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQ 173 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G A LQHE+DHLNG+L D L+ D + + +++ +R Sbjct: 174 IENGFYARVLQHEIDHLNGVLITDRLTP---DCVQGTIEEMMTIR 215 >gi|309803948|ref|ZP_07698031.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d] gi|308163950|gb|EFO66214.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d] Length = 184 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 +V + +LR+V + + +N L ++M++ + ++ G+GLAA Q Sbjct: 6 DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107 +G ++ + + D + F+NPKII+ S + EGCLS+ D + V R+ Sbjct: 66 VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 126 YKLKIKYQTVDGEQRQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|294660577|ref|NP_853423.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)] gi|298286800|sp|Q7NAK8|DEF_MYCGA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|284812240|gb|AAP56991.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)] gi|284930920|gb|ADC30859.1| peptide deformylase [Mycoplasma gallisepticum str. R(high)] Length = 196 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53 LV +P +R V ++ ++ +++++ID ML + + GIG+AA Q+G Sbjct: 12 LVTDDNPKMREVCTEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFI 110 + R + D +++ + INP+ I S + EGCLS+P D V RS + Sbjct: 72 LNQRFFYVHFTDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131 Query: 111 TVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ D + I A GLLA CLQHE+DHL G + D ++ +K Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176 >gi|328783477|ref|XP_623373.2| PREDICTED: hypothetical protein LOC409613 isoform 2 [Apis mellifera] Length = 328 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 16/152 (10%) Query: 30 NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMV-------------F 75 ++D++ E++ D +GLAA QIG+ ++L V+++ ++ +P + F Sbjct: 172 QILDHLYELLKKNDTVGLAAPQIGLPWQLFVVEMTEESIEHIHPYIRKCYGITPHPLTYF 231 Query: 76 INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 INPK+ + + V+ E C SI Y A+V R + + ++ + + A+G LA + Sbjct: 232 INPKMNIINSEEVVHFETCASIDCYYAEVPRPKEVQIEALNKFGESFSMKAEGWLARIIH 291 Query: 136 HELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 HE+DHL G L+ D + K K+ + Sbjct: 292 HEMDHLKGHLYTDRMFPFS--FNYGKWEKIDK 321 >gi|306825519|ref|ZP_07458859.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432457|gb|EFM35433.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 208 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 24/179 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + N M E M G+GLAA Q Sbjct: 23 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQ 82 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIPDY- 100 + + R++ + + + V NPKI++ S + EGCLS+ Sbjct: 83 LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRVV 142 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ I Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAIK 201 >gi|73666812|ref|YP_302828.1| formylmethionine deformylase [Ehrlichia canis str. Jake] gi|72393953|gb|AAZ68230.1| Formylmethionine deformylase [Ehrlichia canis str. Jake] Length = 194 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 16/161 (9%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63 L +S PIEKI+ +I+ L ++M++VM + +GL+AVQ+G R+ I++ Sbjct: 15 LHAISHPIEKIDQEIIALANDMMKVMEDSKTVGLSAVQLGNHSRMFTINMFSGLFDVTQD 74 Query: 64 -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDC 117 H+ MV INP++++FS + EGC S Y ++ R + RY D Sbjct: 75 IKVLSGHHSLHGKNMVCINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDFRYTDL 134 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 ++ G L+ C+QHELDHLNGIL + + +K + + Sbjct: 135 LGNKCVVRVYGWLSRCIQHELDHLNGILLANVVDNIKNNCV 175 >gi|23396567|sp|Q92JI7|DEF2_RICCN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 Length = 202 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 17/171 (9%) Query: 11 DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--- 63 D +R ++ P+ + +++++ + + GLAA QIG+ +++ + Sbjct: 25 DKTIRIKAKTLNFPLSSEDLRDISILEKKYD--QEENCAGLAAPQIGISKCIIIFAVHED 82 Query: 64 -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D ++INP D EGC S+ + V R I D Sbjct: 83 AELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYD 142 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N A+G LA +QHE+DHLNG +F+D+++ K+ M ++ ++ + Sbjct: 143 INGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 192 >gi|260834959|ref|XP_002612477.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae] gi|229297854|gb|EEN68486.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae] Length = 188 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 17/163 (10%) Query: 6 LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V +PILR + ++ N + +++ +++VM +GL+A Q+GV +++ ++ Sbjct: 12 VVPVGNPILRGQALAVDHRNIKSKETQEVLEQLVKVMRKKGAVGLSAPQVGVGLQIIAVE 71 Query: 63 LQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 P +FINPK+ V+ EGC S+P ++A+V R Sbjct: 72 CTRKQLDLVPQEIRKIREMQEFPLKIFINPKLKVTDYSTVVFPEGCESLPGFQANVPRYY 131 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + +D G A LQHE++HL G L+ID + Sbjct: 132 GVNITGLDREGMPVAWQVTGWPARILQHEVEHLRGDLYIDIMD 174 >gi|313889599|ref|ZP_07823243.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] gi|313122026|gb|EFR45121.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] Length = 204 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 27/187 (14%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGL 47 M ++ +P LR+ ++ + ++ + + L + M++ + + G+GL Sbjct: 16 MA--DIIREGNPTLRQKAQEVALPLSDEDIILGEKMMQFLKHSQDPVMAEKLDLRGGVGL 73 Query: 48 AAVQIGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFS--DDFSVYQEGCLS 96 AA Q+ + R++ + + + NP V NPKI+ S D EGCLS Sbjct: 74 AAPQLDISKRVIAVLVPNMEDSEGNPPKEAYSLQEVMYNPKIVAHSVQDAALAEGEGCLS 133 Query: 97 IPD-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + V R + +TV Y + + + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 134 VDRLIEGYVVRHSRVTVDYYNKDGEKQRIKLKGYNAIVVQHEIDHINGIMFYDRINEADP 193 Query: 156 DMITKKM 162 I + M Sbjct: 194 FAINEGM 200 >gi|323350520|ref|ZP_08086182.1| peptide deformylase [Streptococcus sanguinis VMC66] gi|322123202|gb|EFX94887.1| peptide deformylase [Streptococcus sanguinis VMC66] Length = 210 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 23 KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPIMAEKMGLRGGVGLAAP 82 Query: 51 QIGVLYRLVVIDLQDHAHRKN---------PMVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + RL+ + + + + + NPKI+ S D EGCLS+ Sbjct: 83 QLDISKRLIAVLVPNPEDEEGSPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|15903353|ref|NP_358903.1| peptide deformylase [Streptococcus pneumoniae R6] gi|116516110|ref|YP_816751.1| peptide deformylase [Streptococcus pneumoniae D39] gi|148984798|ref|ZP_01818051.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|148992660|ref|ZP_01822328.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|148997485|ref|ZP_01825090.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|149002851|ref|ZP_01827777.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|149019400|ref|ZP_01834762.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|168483932|ref|ZP_02708884.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00] gi|168489617|ref|ZP_02713816.1| peptide deformylase [Streptococcus pneumoniae SP195] gi|168493357|ref|ZP_02717500.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06] gi|168575913|ref|ZP_02721828.1| peptide deformylase [Streptococcus pneumoniae MLV-016] gi|169833382|ref|YP_001694872.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|182684413|ref|YP_001836160.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|221232181|ref|YP_002511334.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225854897|ref|YP_002736409.1| peptide deformylase [Streptococcus pneumoniae JJA] gi|225859217|ref|YP_002740727.1| peptide deformylase [Streptococcus pneumoniae 70585] gi|237651106|ref|ZP_04525358.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974] gi|237821019|ref|ZP_04596864.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2] gi|303254384|ref|ZP_07340491.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|303259052|ref|ZP_07345031.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|303261732|ref|ZP_07347679.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|303264405|ref|ZP_07350325.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|303267527|ref|ZP_07353375.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|303269331|ref|ZP_07355104.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|307068106|ref|YP_003877072.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|39930890|sp|Q8DP79|DEF_STRR6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122278363|sp|Q04JP7|DEF_STRP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238688366|sp|B1ICN7|DEF_STRPI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238691170|sp|B2IQS1|DEF_STRPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767602|sp|C1C851|DEF_STRP7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767603|sp|B8ZL02|DEF_STRPJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767605|sp|C1CF38|DEF_STRZJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|15458954|gb|AAL00114.1| Peptide deformylase, N-formylmethionylaminoacyl-tRNA deformylase [Streptococcus pneumoniae R6] gi|15858846|gb|AAK13238.1| peptide deformylase DefB [Streptococcus pneumoniae] gi|116076686|gb|ABJ54406.1| peptide deformylase [Streptococcus pneumoniae D39] gi|147756540|gb|EDK63581.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|147759145|gb|EDK66139.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|147922820|gb|EDK73936.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|147928677|gb|EDK79691.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|147931270|gb|EDK82249.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|168995884|gb|ACA36496.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|172042804|gb|EDT50850.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00] gi|182629747|gb|ACB90695.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|183571999|gb|EDT92527.1| peptide deformylase [Streptococcus pneumoniae SP195] gi|183576731|gb|EDT97259.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06] gi|183578335|gb|EDT98863.1| peptide deformylase [Streptococcus pneumoniae MLV-016] gi|220674642|emb|CAR69211.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225721908|gb|ACO17762.1| peptide deformylase [Streptococcus pneumoniae 70585] gi|225722966|gb|ACO18819.1| peptide deformylase [Streptococcus pneumoniae JJA] gi|301800306|emb|CBW32932.1| polypeptide deformylase [Streptococcus pneumoniae OXC141] gi|301802184|emb|CBW34930.1| polypeptide deformylase [Streptococcus pneumoniae INV200] gi|302598631|gb|EFL65670.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|302637312|gb|EFL67800.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|302639995|gb|EFL70451.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|302641161|gb|EFL71535.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|302642928|gb|EFL73227.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|302646217|gb|EFL76444.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|306409643|gb|ADM85070.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|332073763|gb|EGI84242.1| peptide deformylase [Streptococcus pneumoniae GA17570] gi|332073793|gb|EGI84271.1| peptide deformylase [Streptococcus pneumoniae GA41301] gi|332200898|gb|EGJ14970.1| peptide deformylase [Streptococcus pneumoniae GA41317] gi|332201894|gb|EGJ15964.1| peptide deformylase [Streptococcus pneumoniae GA47368] Length = 203 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + + NPKI++ S + EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189 >gi|313683120|ref|YP_004060858.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994] gi|313155980|gb|ADR34658.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994] Length = 273 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 78/159 (49%), Gaps = 5/159 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K L+ +PD +R +S I K + ++ L++NM + M + ++A+QI + Y +++ Sbjct: 1 MIKELITYPDERIRYISADIRKYDDELFELLENMRDTMEHHELNAISAIQIAIPYSAILL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 +N + IN ++I+ + + + A +KR I V Y + N + Sbjct: 61 -----KEGENILELINARLISTEGVEEIDEVSPYFPKGFSAKIKRYGKIKVVYENRNGEL 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + A+G L+ LQ ++D L G +D L + +R + Sbjct: 116 RHLDAEGELSQRLQRQIDFLFGGTLLDKLDKKERQKAEE 154 >gi|310644037|ref|YP_003948795.1| peptide deformylase 2 [Paenibacillus polymyxa SC2] gi|309248987|gb|ADO58554.1| Peptide deformylase 2 [Paenibacillus polymyxa SC2] Length = 188 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K +V +PILR+ P+ ++ + + + ML+ + ++ G+GL+A Sbjct: 7 KDIVREGEPILRKKVDPVCLPLSEEDLQQMQWMLDYLKNSQNEELATRYELRPGVGLSAN 66 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDY-RADVKRS 107 Q+G+ R+ I +D +F NPK+++ S + EGCLS+ Y V R Sbjct: 67 QVGLNKRMCAIYYEDGDQTVEYALF-NPKLVSHSTSMIYLEQGEGCLSVDRYIPGYVPRY 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I ++ + +++ G A +QHE+DHL+GI+F D ++ Sbjct: 126 EKIRIKANLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRINPE 171 >gi|289164094|ref|YP_003454232.1| polypeptide deformylase [Legionella longbeachae NSW150] gi|288857267|emb|CBJ11094.1| putative polypeptide deformylase [Legionella longbeachae NSW150] Length = 222 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 17/182 (9%) Query: 2 VKKPLVIFPDP----ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 ++ +V P +L+ ++ + ++ +LI M + G+GLAA Q+ Sbjct: 22 MELKIVTIEQPEYHRVLKHQAQEVRFPLSQADKDLIAAMSSKLQKLGGVGLAAPQVNFPR 81 Query: 57 RLVVIDLQ-------DHAHRKNPM-VFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRS 107 R++ I + D+ PM + INP EGC S+ V R Sbjct: 82 RIIAIYIPEEAALLRDNIKSFYPMHIMINPSYTPVEGSAIQHDFEGCYSVASKSGKVPRY 141 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I V Y D Q +G + LQHE+DHLNG L ID L+ D + + +++ Sbjct: 142 EQINVSYYDELGQFHRQTEEGFYSRVLQHEIDHLNGFLIIDRLTP---DCVQGSVEEMMT 198 Query: 168 LR 169 LR Sbjct: 199 LR 200 >gi|148360734|ref|YP_001251941.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|296106200|ref|YP_003617900.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|148282507|gb|ABQ56595.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|295648101|gb|ADG23948.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] Length = 200 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 14 LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---- 68 L+ + I+ +N + +LI+ M + +Y+ G+GLAA Q+ +++ + + + A Sbjct: 17 LKTRAENIQFPLNREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 76 Query: 69 --RKNPM-VFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + PM + INP + EGC S+ V R I ++Y D Sbjct: 77 NAKIFPMHILINPNYEPLPHTRIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQ 136 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G A LQHE+DHLNG+L D L+ D + + +++ +R Sbjct: 137 IENGFYARVLQHEIDHLNGVLITDRLTP---DCVQGTIEEMMTIR 178 >gi|325697445|gb|EGD39331.1| peptide deformylase [Streptococcus sanguinis SK160] gi|332359962|gb|EGJ37776.1| peptide deformylase [Streptococcus sanguinis SK1056] Length = 210 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50 K ++ +P LR ++ + ++ + L + M+ E M G+GLAA Sbjct: 23 KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVTAEKMGLRGGVGLAAP 82 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + RL+ + + NP + NPKI+ S D EGCLS+ Sbjct: 83 QLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|332359300|gb|EGJ37121.1| peptide deformylase [Streptococcus sanguinis SK49] Length = 210 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR ++ + + +M + + M E M G+GLAA Q Sbjct: 24 DIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 83 Query: 52 IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99 + + RL+ + + NP + NPKI+ S D EGCLS+ + Sbjct: 84 LDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDRE 143 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 144 VPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|307706823|ref|ZP_07643628.1| peptide deformylase [Streptococcus mitis SK321] gi|307617908|gb|EFN97070.1| peptide deformylase [Streptococcus mitis SK321] Length = 203 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 24/173 (13%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR V+ + + +M + + M E M G+GLAA Sbjct: 17 KDIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 76 Query: 51 QIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-D 99 Q+ + R++ + + + + NPKI++ S + EGCLS+ + Sbjct: 77 QLDISKRIIAVLVPNIVEEGETPEEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRN 136 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 137 VPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189 >gi|307702002|ref|ZP_07639010.1| peptide deformylase [Streptococcus mitis NCTC 12261] gi|307616647|gb|EFN95836.1| peptide deformylase [Streptococcus mitis NCTC 12261] Length = 203 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 24/173 (13%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR V+ + + +M + + M E M G+GLAA Sbjct: 17 KDIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 76 Query: 51 QIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-D 99 Q+ + R++ + + + + NPKI++ S + EGCLS+ + Sbjct: 77 QLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRN 136 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 137 VPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189 >gi|73662866|ref|YP_301647.1| peptide deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495381|dbj|BAE18702.1| putative N-formylmethionyl-tRNA deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 162 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + + K + ++ L+ ++ + MY + + A QIGV ++ + Sbjct: 1 MTIKQLVTSKHPILNKSIPDVTKFDENLEQLLLDLEDTMYDVEASAICAPQIGVAQKVAM 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + INP+II+ SD EG +SIP+ +V+RS I V+ D Sbjct: 61 IDM----EMDGLLQLINPQIISESDTKVTDLEGSISIPNVYGEVERSKMIVVKSNDKKGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DH G LF + + + Sbjct: 117 EVEMTAYDDIARMILHMIDHFEGRLFTERVEKF 149 >gi|21730762|pdb|1LMH|A Chain A, Crystal Structure Of S. Aureus Peptide Deformylase Length = 184 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K ++ P LR+ + +E + + + E + ++ G+GLA Sbjct: 3 TXKDIIRDGHPTLRQKAAELELPLTKEEKETLIAXREFLVNSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104 A QI + R + + + D + +NPKI++ S + + EGCLS+ D V Sbjct: 63 APQINISKRXIAVLIPDDGSGKSYDYXLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG+ F DH+ + Sbjct: 123 HRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVXFYDHIDK 170 >gi|270157521|ref|ZP_06186178.1| polypeptide deformylase [Legionella longbeachae D-4968] gi|269989546|gb|EEZ95800.1| polypeptide deformylase [Legionella longbeachae D-4968] Length = 219 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 17/182 (9%) Query: 2 VKKPLVIFPDP----ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 ++ +V P +L+ ++ + ++ +LI M + G+GLAA Q+ Sbjct: 19 MELKIVTIEQPEYHRVLKHQAQEVRFPLSQADKDLIAAMSSKLQKLGGVGLAAPQVNFPR 78 Query: 57 RLVVIDLQ-------DHAHRKNPM-VFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRS 107 R++ I + D+ PM + INP EGC S+ V R Sbjct: 79 RIIAIYIPEEAALLRDNIKSFYPMHIMINPSYTPVEGSAIQHDFEGCYSVASKSGKVPRY 138 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I V Y D Q +G + LQHE+DHLNG L ID L+ D + + +++ Sbjct: 139 EQINVSYYDELGQFHRQTEEGFYSRVLQHEIDHLNGFLIIDRLTP---DCVQGSVEEMMT 195 Query: 168 LR 169 LR Sbjct: 196 LR 197 >gi|322388152|ref|ZP_08061756.1| peptide deformylase [Streptococcus infantis ATCC 700779] gi|321140824|gb|EFX36325.1| peptide deformylase [Streptococcus infantis ATCC 700779] Length = 203 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 24/183 (13%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K ++ +P LR V+ + ++ + L + M++ + + G+GLAA Sbjct: 17 KDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAAP 76 Query: 51 QIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIPD- 99 Q+ + R++ + + + V NPKI++ S + EGCLS+ Sbjct: 77 QLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRT 136 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y D + + I G + +QHE+DHLNG++F D ++ + Sbjct: 137 VPGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGVMFYDRINEKDPFAVK 196 Query: 160 KKM 162 + + Sbjct: 197 EGL 199 >gi|329115956|ref|ZP_08244673.1| peptide deformylase [Streptococcus parauberis NCFD 2020] gi|326906361|gb|EGE53275.1| peptide deformylase [Streptococcus parauberis NCFD 2020] Length = 204 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR + + + +M + N M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRAHAEEVSLPLSDQDLILGEKMMQFLKNSQDPVMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPD- 99 + V R++ + + + NP V NPKI++ S D EGCLS+ Sbjct: 78 LDVSKRIIAVLVPNMEDAEGNPPKEAFSIKEVMYNPKIVSHSVQDAALADGEGCLSVDRL 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y D + I G A +QHE+DH+NGI+F D ++ I Sbjct: 138 IEGYVVRHARVTVEYFDKEGEKHRIKLKGYNAIVVQHEIDHINGIMFYDRINSDTPFAIK 197 Query: 160 KKM 162 + M Sbjct: 198 EGM 200 >gi|134302514|ref|YP_001122484.1| peptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|254370075|ref|ZP_04986081.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874370|ref|ZP_05247080.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|134050291|gb|ABO47362.1| polypeptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|151568319|gb|EDN33973.1| hypothetical protein FTBG_01170 [Francisella tularensis subsp. tularensis FSC033] gi|254840369|gb|EET18805.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158706|gb|ADA78097.1| peptide deformylase [Francisella tularensis subsp. tularensis NE061598] Length = 210 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 22 NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS R + I + + + Sbjct: 80 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 139 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 140 KITGKLDSIAAIIFQHEFNHLLGSVYVD 167 >gi|75766232|pdb|2AI7|A Chain A, S.Pneumoniae Polypeptide Deformylase Complexed With Sb- 485345 gi|75766238|pdb|2AIA|A Chain A, S.Pneumoniae Pdf Complexed With Sb-543668 Length = 203 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + + NPKI++ S + EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189 >gi|312865443|ref|ZP_07725670.1| peptide deformylase [Streptococcus downei F0415] gi|311098961|gb|EFQ57178.1| peptide deformylase [Streptococcus downei F0415] Length = 204 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V++ +E + +M + N M E M G+GLAA Q Sbjct: 18 DIIREGNPTLREVAKDVELPLSDEDIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99 + + R++ + + + + NP V NP+I++ S D EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNPEDKEGNPPAQPYSMQEVMYNPRIVSHSVQDAALADGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R + +TV Y+D N Q I G + +QHE+DH NGI+F DH++ I Sbjct: 138 VPGYVVRHSRVTVEYVDKNGDKQKIKLRGYNSMVVQHEIDHTNGIMFYDHINEDNPFEIK 197 Query: 160 KKM 162 + M Sbjct: 198 EGM 200 >gi|307609411|emb|CBW98900.1| polypeptide deformylase [Legionella pneumophila 130b] Length = 200 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 14 LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---- 68 L+ + I+ +N + +LI+ M + +Y+ G+GLAA Q+ +++ + + + A Sbjct: 17 LKTRAENIQFPLNREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 76 Query: 69 --RKNPM-VFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + PM + INP + EGC S+ V R I ++Y D Sbjct: 77 NAKIFPMHILINPSYEPLPHTRIISDFEGCYSVSSKAGKVPRYDEIRLKYYDEEGNAHQQ 136 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G A LQHE+DHLNG+L D L+ D + + +++ +R Sbjct: 137 IENGFYARVLQHEIDHLNGVLITDRLTP---DCVQGTIEEMMVIR 178 >gi|257468433|ref|ZP_05632527.1| hypothetical protein FulcA4_03769 [Fusobacterium ulcerans ATCC 49185] gi|317062699|ref|ZP_07927184.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185] gi|313688375|gb|EFS25210.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185] Length = 159 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 14/166 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVM------YSTDGIGLAAVQIGV 54 +K+ +++ + L ++S P++ + + +++ ++ + + Y G +AA QIGV Sbjct: 1 MKREILLLGNEELYQISEPVKPDEIETLKSVVQDLHDTLMDFREKYHA-GRAIAAPQIGV 59 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 RL+ + + P+VFINP + ++ + C+S P+ V R ++Y Sbjct: 60 KKRLLYMFID------KPVVFINPVLEFPDNEMMEVLDDCMSFPNLLVKVMRHKRCRIKY 113 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 +D + + Q++ +G L+ LQHE DHL+GIL K +I K Sbjct: 114 LDMDWKEQVMSLEGDLSELLQHEFDHLDGILATMRAIDNKSLVIKK 159 >gi|309798501|ref|ZP_07692783.1| peptide deformylase [Streptococcus infantis SK1302] gi|308117873|gb|EFO55267.1| peptide deformylase [Streptococcus infantis SK1302] Length = 203 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 24/173 (13%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K ++ +P LR V+ + ++ + L + M++ + + G+GLAA Sbjct: 17 KDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAAP 76 Query: 51 QIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIPD- 99 Q+ + R++ + + + V NPKI++ S + EGCLS+ Sbjct: 77 QLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRA 136 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 137 VPGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 189 >gi|327460694|gb|EGF07029.1| peptide deformylase [Streptococcus sanguinis SK1] Length = 210 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50 K ++ +P LR V+ + + +M + + M E M G+GLAA Sbjct: 23 KDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAS 82 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + RL+ + + NP + NPKI+ S D EGCLS+ Sbjct: 83 QLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196 >gi|332522419|ref|ZP_08398671.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176] gi|332313683|gb|EGJ26668.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176] Length = 204 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR+ ++ + + +M + + M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRQKAQEVSLPLSDKDIILGEKMMQFLKHSQDPVMAEKLDLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPD- 99 + + R++ + + + NP V NPK++ S D EGCLS+ Sbjct: 78 LDISKRIIAVLVPNMEDSEGNPPKEAYSLQEVMYNPKVVAHSVQDAALAEGEGCLSVDRP 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R + +TV Y + + + Q I G A +QHE+DH+NGI+F D +++ I Sbjct: 138 IEGYVVRHSRVTVDYYNKDGEKQRIKLKGYNAIVVQHEIDHINGIMFYDRINQADPFAIN 197 Query: 160 KKM 162 + M Sbjct: 198 EGM 200 >gi|331266683|ref|YP_004326313.1| peptide deformylase [Streptococcus oralis Uo5] gi|326683355|emb|CBZ00973.1| peptide deformylase [Streptococcus oralis Uo5] Length = 203 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + + NPKI++ S + EGCLS+ + Sbjct: 78 LDISKRVIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 189 >gi|54113563|gb|AAV29415.1| NT02FT1681 [synthetic construct] Length = 211 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 23 NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS R + I + + + Sbjct: 81 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 140 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 141 KITGKLDSIAAIIFQHEFNHLLGSVYVD 168 >gi|156501866|ref|YP_001427931.1| peptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009647|ref|ZP_02274578.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC200] gi|254368721|ref|ZP_04984734.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp. holarctica FSC022] gi|156252469|gb|ABU60975.1| polypeptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121642|gb|EDO65812.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp. holarctica FSC022] Length = 210 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 22 NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS R + I + + + Sbjct: 80 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 139 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 140 KITGKLDSIAAVIFQHEFNHLLGSVYVD 167 >gi|322386945|ref|ZP_08060569.1| peptide deformylase [Streptococcus cristatus ATCC 51100] gi|321269227|gb|EFX52163.1| peptide deformylase [Streptococcus cristatus ATCC 51100] Length = 210 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 24 DIIREGNPTLRAVAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 83 Query: 52 IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99 + + R++ + + + NP V NPK++ S D EGCLS+ + Sbjct: 84 LDISKRIIAVLVPNLEDEEGNPPKEAYSLAQVMYNPKVVAHSVQDAALADGEGCLSVDRE 143 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + Q I G + +QHE+DH+NGI+F D ++ Sbjct: 144 VPGYVVRHARVTVDYFDKDGQKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 196 >gi|56707552|ref|YP_169448.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670023|ref|YP_666580.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] gi|224456620|ref|ZP_03665093.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604044|emb|CAG45036.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320356|emb|CAL08419.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] Length = 211 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 23 NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS R + I + + + Sbjct: 81 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 140 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 141 KITGKLDSIAAIIFQHEFNHLLGSVYVD 168 >gi|221120519|ref|XP_002163626.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 196 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 21/164 (12%) Query: 6 LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 L DP+LR+V+R + D +LI M+ +M S G G+AA Q+GV +++ I+ Sbjct: 23 LRQNGDPVLRKVAREVPLEYINTQDFKDLITKMILIMRSNKGQGIAAPQVGVDLQVIAIE 82 Query: 63 LQDHA-----------------HRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +H R P+ +FINPK+ + + + ++EGCLSI V Sbjct: 83 FTEHDLEMATKQYGKNEVEKRQMRTFPLHIFINPKLKIINYETTRFEEGCLSILGTVGVV 142 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 +R + + +++ + ++ DG LA +QHE+ HL G L +D Sbjct: 143 QRYREVQLEFVNEKGVNVLMNFDGWLARMVQHEMHHLKGFLIVD 186 >gi|75766239|pdb|2AIE|P Chain P, S.Pneumoniae Polypeptide Deformylase Complexed With Sb- 505684 Length = 203 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + + NPKI++ S + EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189 >gi|225405389|ref|ZP_03760578.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme DSM 15981] gi|225043091|gb|EEG53337.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme DSM 15981] Length = 160 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 12/159 (7%) Query: 2 VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYS-----TDGIGLAAVQIGVL 55 + K +++ +P L +S + E+ +++ L ++ + M G +AA QIGV Sbjct: 1 MIKEILLLGNPALYEISEAVREEELTEMAALERDLHDTMMEFRRIYKAGRAIAAPQIGVK 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R++ +++ + P++ INP + + + C+S P V R + Y Sbjct: 61 KRVLYMNVGE------PVLLINPVLEFPDGEMMEVMDDCMSFPGLLVKVDRYRRCRIHYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D N Q + + +G L+ LQHE DHL+GIL + Sbjct: 115 DRNWQDEEMELEGDLSELLQHEYDHLDGILATMRAKDSR 153 >gi|319946246|ref|ZP_08020486.1| peptide deformylase [Streptococcus australis ATCC 700641] gi|319747628|gb|EFV99881.1| peptide deformylase [Streptococcus australis ATCC 700641] Length = 204 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ P LR ++ + ++ + L + M++ ++ + G+GLAA Q Sbjct: 18 DIIREGHPTLRAIAEEVTFPLSDQEIILGEKMMQFLHHSQDPVMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99 + + R++ + + NP V NPKI++ S + EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNPEDEEGNPPKEAYSIQEVMYNPKIVSHSVQDAALGDGEGCLSVDRN 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + I G + +QHE+DH+NG++F D ++ Sbjct: 138 VPGYVVRHARVTVDYYDKTGEKHRIKLKGYNSIVVQHEIDHINGVMFYDRINP 190 >gi|284033559|ref|YP_003383490.1| formylmethionine deformylase [Kribbella flavida DSM 17836] gi|283812852|gb|ADB34691.1| formylmethionine deformylase [Kribbella flavida DSM 17836] Length = 162 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQD 65 V P P+L ++ ++ ++ L +++ M + G +GLAA Q+GV ++ +D+ Sbjct: 2 VRAPHPVLATEGAEVDPLDPVMLALAADLVATMRISPGCVGLAAPQVGVAAQMFALDVTG 61 Query: 66 HAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MDCNAQH 121 H + V N ++ + +EGC+S+PD DVKR+ +TV + Sbjct: 62 HPKTRTCHGVFVLCNAVVVEAT-RKEKAREGCMSVPDLTGDVKRATRLTVTGVLPGTTDV 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + D A +QHE+DH NG LF+D + Sbjct: 121 VTLTTDAFEARAVQHEIDHCNGSLFLDRV 149 >gi|289168210|ref|YP_003446479.1| peptide deformylase [Streptococcus mitis B6] gi|307704979|ref|ZP_07641866.1| peptide deformylase [Streptococcus mitis SK597] gi|322376907|ref|ZP_08051400.1| peptide deformylase [Streptococcus sp. M334] gi|288907777|emb|CBJ22617.1| peptide deformylase [Streptococcus mitis B6] gi|307621430|gb|EFO00480.1| peptide deformylase [Streptococcus mitis SK597] gi|321282714|gb|EFX59721.1| peptide deformylase [Streptococcus sp. M334] Length = 203 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + + NPKI++ S + EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189 >gi|81429108|ref|YP_396108.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K] gi|78610750|emb|CAI55801.1| Formylmethionine deformylase (formyl-L-methionyl peptideamidohydrolase) [Lactobacillus sakei subsp. sakei 23K] Length = 136 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59 + KP+ + L +V+ P ++ + I ++++ + + +G+AA IGV R++ Sbjct: 1 MIKPI-MHDTEFLSQVALPATTADTAV---ITDLIDTLQANTDRCVGMAANMIGVNKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + P++ +NPKII S+ + +EGCLS+ R+ KR I V Y D Sbjct: 57 IVQMGIL-----PVIMVNPKIIRHSNPYQT-EEGCLSLVGQRS-TKRYETIEVSYQDRQF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q G +A +QHE+DH GIL Sbjct: 110 KAQQQAFSGWVAQIIQHEIDHCEGILI 136 >gi|270293023|ref|ZP_06199234.1| peptide deformylase [Streptococcus sp. M143] gi|270279002|gb|EFA24848.1| peptide deformylase [Streptococcus sp. M143] Length = 203 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 24/182 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR ++ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIPDY- 100 + + R++ + + + + NPKI++ S + EGCLS+ Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRVV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ + + Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINEKDPFAVKE 197 Query: 161 KM 162 + Sbjct: 198 GL 199 >gi|306829233|ref|ZP_07462423.1| peptide deformylase [Streptococcus mitis ATCC 6249] gi|304428319|gb|EFM31409.1| peptide deformylase [Streptococcus mitis ATCC 6249] Length = 208 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 23 DIIREGNPTLRAVAEEVTFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + + NPKI++ S + EGCLS+ + Sbjct: 83 LDISKRIIAVLVPNIVEEGETPEEAYDLQAIMYNPKIVSHSVQNAALGEGEGCLSVDRNV 142 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 194 >gi|89255883|ref|YP_513245.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115314370|ref|YP_763093.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|254367244|ref|ZP_04983272.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] gi|290953373|ref|ZP_06557994.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|295313377|ref|ZP_06803985.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|89143714|emb|CAJ78913.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115129269|gb|ABI82456.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|134253062|gb|EBA52156.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] Length = 211 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 23 NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS R + I + + + Sbjct: 81 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 140 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 141 KITGKLDSIAAVIFQHEFNHLLGSVYVD 168 >gi|284931676|gb|ADC31614.1| peptide deformylase [Mycoplasma gallisepticum str. F] Length = 196 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53 LV +P +R V ++ ++ +++++ID ML + + GIG+AA Q+G Sbjct: 12 LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFI 110 + R + D +++ + INP+ I S + EGCLS+P D V RS + Sbjct: 72 LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131 Query: 111 TVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ D + I A GLLA CLQHE+DHL G + D ++ +K Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176 >gi|325695505|gb|EGD37405.1| peptide deformylase [Streptococcus sanguinis SK150] Length = 220 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 25/174 (14%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50 K ++ +P LR ++ + ++ + L + M+ E M G+GLAA Sbjct: 33 KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVTAEKMGLRGGVGLAAP 92 Query: 51 QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98 Q+ + R++ + + NP + NPKI+ S D EGCLS+ Sbjct: 93 QLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 152 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 153 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 206 >gi|67458516|ref|YP_246140.1| polypeptide deformylase [Rickettsia felis URRWXCal2] gi|67004049|gb|AAY60975.1| Polypeptide deformylase [Rickettsia felis URRWXCal2] Length = 224 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 13/143 (9%) Query: 41 STDGIGLAAVQIGVLYRLVVIDLQDHAHRK----------NPMVFINPKIITFSDDFSVY 90 + GLAA QI + +++ + ++ K ++INP D Sbjct: 79 EENCAGLAAPQISISKCIIIFAVHENEELKKWRPNLKDTMPKTIWINPSYKPIGIDKHED 138 Query: 91 QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 EGC S+ + V R I D N A+G LA +QHE+DHLNG +F+D+ Sbjct: 139 YEGCFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYA 198 Query: 151 SRLK---RDMITKKMSKLVQLRD 170 + K ++ +K K ++ + Sbjct: 199 APKKIMTKEKYLEKRKKAMEQEN 221 >gi|302340674|ref|YP_003805880.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293] gi|301637859|gb|ADK83286.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293] Length = 175 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 12/156 (7%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNM---LEVMYSTDGIG--LAAVQIGVLYRLV 59 +++ DP LR+ + ++ + + + LE + G G +AA QIG+ R++ Sbjct: 5 ILLLGDPRLRKKATTASLPADTQLRREDERLQKALEAFRAEKGFGRAIAAPQIGISKRVI 64 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + L NP I + S++ + + C+S PD V+R I++ Y D Sbjct: 65 ALHLDGKT-----FSIFNPVITSHSEETFLLWDDCMSFPDLLVKVRRYTSISIVYQDALG 119 Query: 120 QHQIIY-ADGLLATCLQHELDHLNGILFIDHLSRLK 154 + D L+ LQHE+DHL+GIL ID K Sbjct: 120 REHRWEKPDRSLSELLQHEIDHLDGILAIDRAIDRK 155 >gi|307709244|ref|ZP_07645702.1| peptide deformylase [Streptococcus mitis SK564] gi|307619827|gb|EFN98945.1| peptide deformylase [Streptococcus mitis SK564] Length = 203 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + + NPKI++ S + EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189 >gi|296877265|ref|ZP_06901305.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] gi|312867979|ref|ZP_07728183.1| peptide deformylase [Streptococcus parasanguinis F0405] gi|296431785|gb|EFH17592.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] gi|311096383|gb|EFQ54623.1| peptide deformylase [Streptococcus parasanguinis F0405] Length = 204 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V+ + ++ + L + M++ ++ + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTFPLSDQEIILGEKMMQFLHHSQDPVMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99 + + R++ + + + NP V NPK++ S + EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSVQDAALGDGEGCLSVDRN 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y + + + I G + +QHE+DH NGI+F D ++ I Sbjct: 138 VPGYVVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEIDHTNGIMFYDRINPNNPFEIK 197 Query: 160 KKM 162 + + Sbjct: 198 EGL 200 >gi|254373927|ref|ZP_04989409.1| polypeptide deformylase [Francisella novicida GA99-3548] gi|151571647|gb|EDN37301.1| polypeptide deformylase [Francisella novicida GA99-3548] Length = 210 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I +++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 22 NKVLYQKCKPVADIQSAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS R + I + + + Sbjct: 80 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 139 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 140 KITAKLDSIAAVIFQHEFNHLLGSVYVD 167 >gi|322390858|ref|ZP_08064367.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] gi|321142443|gb|EFX37912.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] Length = 204 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V+ + ++ + L + M++ ++ + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTFPLSDQEIILGEKMMQFLHHSQDPIMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99 + + R++ + + + NP V NPK++ S + EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSVQDAALGDGEGCLSVDRN 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y + + + I G + +QHE+DH NGI+F D ++ I Sbjct: 138 VPGYVVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEIDHTNGIMFYDRINPNNPFEIK 197 Query: 160 KKM 162 + + Sbjct: 198 EGL 200 >gi|167626562|ref|YP_001677062.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596563|gb|ABZ86561.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 201 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I +S+ N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 13 NEVLYQRCKPVNDIQSSETQNIIAEMYEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 70 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 + P+ VFINPKI S+ + GCLS R + I + + + Sbjct: 71 RYPLSFDSVPFQVFINPKITKASEKRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGK 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 131 KITGKLDSIAAVIFQHEFNHLLGSVYVD 158 >gi|157964118|ref|YP_001498942.1| polypeptide deformylase [Rickettsia massiliae MTU5] gi|157843894|gb|ABV84395.1| Polypeptide deformylase [Rickettsia massiliae MTU5] Length = 232 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 17/171 (9%) Query: 11 DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----- 61 D +R ++ P+ + +++++ + + GLAA QIG+ +++ Sbjct: 55 DKTIRIKAKTLNFPLSSEDLRDISILEKKYD--QEENCAGLAAPQIGISKCIIIFAVHED 112 Query: 62 -----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D ++INP D EGC S+ + V R I D Sbjct: 113 AELKKWRPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENAIGPVARFKKIHYHAYD 172 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N A+G LA +QHE+DHLNG +F+D+++ ++ M ++ ++ + Sbjct: 173 INGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-QKIMTKEEYLEMRK 222 >gi|229586292|ref|YP_002844793.1| Polypeptide deformylase [Rickettsia africae ESF-5] gi|228021342|gb|ACP53050.1| Polypeptide deformylase [Rickettsia africae ESF-5] Length = 224 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 17/171 (9%) Query: 11 DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 D +R ++ P+ + +++++ + + GLAA QIG+ +++ + + Sbjct: 47 DKTIRIKAQTLNFPLSSEDLRNISILEKKYD--QEENCAGLAAPQIGISKCIIIFAVHED 104 Query: 67 AHRK----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 A K ++INP D E C S+ + V R I D Sbjct: 105 AELKKWHPDLKDTIPKTIWINPSYKPIGIDKHEDYEECFSVENATGPVARFKKIHYHAYD 164 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N A+G LA +QHE+DHLNG +F+D+++ K+ M ++ ++ + Sbjct: 165 INGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214 >gi|159040050|ref|YP_001539303.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918885|gb|ABW00313.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 506 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 11/156 (7%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYS-------TDGIGLAAVQIGVLY 56 ++ +LR+ +RP + + + +++D + ++ + G+G+AA Q+G+ Sbjct: 334 ILQHGADLLRQPTRPFDLPREDRAARDVVDRLTATLFRLDELHPFSKGVGIAAPQLGIGR 393 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+ D + P+V +NP+++ + D EGCLS D R V R I V + Sbjct: 394 AAAVVRPPDLSGE--PVVLLNPRVVDAAPDTDEQYEGCLSFFDQRGLVPRPLRIDVEHTH 451 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I + +A + HE+DHL G L++D ++ Sbjct: 452 IDGSRVITSYEYGMARLVAHEIDHLEGRLYVDRMAP 487 >gi|217073027|gb|ACJ84873.1| unknown [Medicago truncatula] Length = 241 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 17/132 (12%) Query: 7 VIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 V DP+L ++ ++ ++ + +ID+M+ VM G+GLAA QIGV R++V++ Sbjct: 82 VKAGDPVLHEPAQEVDPSEIMSDKVQKIIDDMIRVMRKAPGVGLAAPQIGVSSRIIVLED 141 Query: 64 QD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 + H + +V +NPK+ + S +++ EGCLS+ +RA V+R Sbjct: 142 TEEFISYAPKEVLKAQDRHPFDLLVILNPKLKSTSKRTALFFEGCLSVDGFRAVVERHLD 201 Query: 110 ITVRYMDCNAQH 121 + V +D N Sbjct: 202 VEVTGLDRNGDQ 213 >gi|7109689|gb|AAF36760.1| polypeptide deformylase [Mycoplasma gallisepticum] gi|28212477|gb|AAO37616.1| polypeptide deformylase [Mycoplasma gallisepticum] Length = 204 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53 LV +P +R V ++ ++ +++++ID ML + + GIG+AA Q+G Sbjct: 20 LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 79 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFI 110 + R + D +++ + INP+ I S + EGCLS+P D V RS + Sbjct: 80 LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 139 Query: 111 TVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ D + I A GLLA CLQHE+DHL G + D ++ +K Sbjct: 140 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 184 >gi|328675640|gb|AEB28315.1| Peptide deformylase [Francisella cf. novicida 3523] Length = 204 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ +I S +I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 16 NQVLYQKCKPVSEIKSVEIQNIITEMYEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 73 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS R + I + + + Sbjct: 74 RYPFDFGSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 133 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I D + A QHE +HL G +++D Sbjct: 134 KIIGKLDSIAAVIFQHEFNHLLGSVYVD 161 >gi|301794480|emb|CBW36919.1| polypeptide deformylase [Streptococcus pneumoniae INV104] gi|332203286|gb|EGJ17354.1| peptide deformylase [Streptococcus pneumoniae GA47901] Length = 203 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR ++ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + + NPKI++ S + EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEGIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189 >gi|297720233|ref|NP_001172478.1| Os01g0636600 [Oryza sativa Japonica Group] gi|255673494|dbj|BAH91208.1| Os01g0636600 [Oryza sativa Japonica Group] Length = 198 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 58/99 (58%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 84 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 143 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +V +NP + S VY+E CLS P A+V Sbjct: 144 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANV 182 >gi|116490852|ref|YP_810396.1| peptide deformylase [Oenococcus oeni PSU-1] gi|290890300|ref|ZP_06553379.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429] gi|116091577|gb|ABJ56731.1| peptide deformylase [Oenococcus oeni PSU-1] gi|290480086|gb|EFD88731.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429] Length = 185 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 21/170 (12%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51 + +P+LR ++P+ ++ +I L MLE + G+GLA Q Sbjct: 3 DITRDGNPVLRAKAKPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQ 62 Query: 52 IGVLYRLVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRAD 103 + ++ + + ++ + NPKI S + + EGCLS D Sbjct: 63 VNKSLQMTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALETGEGCLSKDEDTPGI 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R+ ITV Y D N +H I A QHE+DHL GI++ DH++ L Sbjct: 123 VLRADKITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 172 >gi|322392208|ref|ZP_08065669.1| peptide deformylase [Streptococcus peroris ATCC 700780] gi|321144743|gb|EFX40143.1| peptide deformylase [Streptococcus peroris ATCC 700780] Length = 203 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 24/180 (13%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50 K ++ +P LR ++ + ++ + L + ML E M G+GLAA Sbjct: 17 KDIIREGNPTLRALAEEVSFPLSDQEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAAP 76 Query: 51 QIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFS--DDFSVYQEGCLSIP-D 99 Q+ + R++ + + + V NPKI++ S D EGCLS+ + Sbjct: 77 QLDISKRIIAVLVPNIVEEGETPTEAYSMQAVMYNPKIVSHSVQDAALAEGEGCLSVDRE 136 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y D + + I G + +QHE+DH NG++F D ++ I Sbjct: 137 VPGYVIRHARVTVEYFDKDGEKHRIKLKGYNSIVVQHEIDHTNGVMFYDRINEKDPFEIK 196 >gi|22538033|ref|NP_688884.1| peptide deformylase [Streptococcus agalactiae 2603V/R] gi|25011922|ref|NP_736317.1| peptide deformylase [Streptococcus agalactiae NEM316] gi|76788216|ref|YP_330458.1| peptide deformylase [Streptococcus agalactiae A909] gi|76797863|ref|ZP_00780126.1| peptide deformylase [Streptococcus agalactiae 18RS21] gi|77405647|ref|ZP_00782735.1| polypeptide deformylase [Streptococcus agalactiae H36B] gi|77408421|ref|ZP_00785160.1| polypeptide deformylase [Streptococcus agalactiae COH1] gi|77411534|ref|ZP_00787877.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|77414207|ref|ZP_00790370.1| polypeptide deformylase [Streptococcus agalactiae 515] gi|39930892|sp|Q8DXF6|DEF_STRA5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|39930894|sp|Q8E378|DEF_STRA3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123601213|sp|Q3JZ45|DEF_STRA1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22534936|gb|AAN00757.1|AE014277_5 polypeptide deformylase [Streptococcus agalactiae 2603V/R] gi|24413464|emb|CAD47542.1| Unknown [Streptococcus agalactiae NEM316] gi|76563273|gb|ABA45857.1| peptide deformylase [Streptococcus agalactiae A909] gi|76586766|gb|EAO63261.1| peptide deformylase [Streptococcus agalactiae 18RS21] gi|77159733|gb|EAO70881.1| polypeptide deformylase [Streptococcus agalactiae 515] gi|77162388|gb|EAO73356.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|77172944|gb|EAO76074.1| polypeptide deformylase [Streptococcus agalactiae COH1] gi|77175720|gb|EAO78501.1| polypeptide deformylase [Streptococcus agalactiae H36B] Length = 204 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDN-------------MLEVMYSTDGIGLAAVQ 51 ++ +P LR+V+ + S+ ++ M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99 + + R++ + + + + NP V NPK+++ S D EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +T+ Y D + + G + +QHE+DH++GI+F D ++ Sbjct: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190 >gi|323704619|ref|ZP_08116197.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536081|gb|EGB25854.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum LX-11] Length = 117 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 70/113 (61%), Gaps = 6/113 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPIL + ++ +EKI+ I+ ++++M E MY+ DG+GLAA QIG+L RLVV Sbjct: 1 MALRYIREIGDPILYKKAKQVEKIDEHILMILEDMAETMYNADGVGLAANQIGILRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +D+ + + INP+II + + EGCLS+P+ +V R A + V+ Sbjct: 61 VDVGE-----GLIELINPEII-LEEGEQIGVEGCLSVPNVTGEVIRPAKVRVK 107 >gi|291542377|emb|CBL15487.1| N-formylmethionyl-tRNA deformylase [Ruminococcus bromii L2-63] Length = 136 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + + +V DP L+R S + + + ++L+ + + +G+AA IGV R+ Sbjct: 1 MVREIVH--DPMFLQRKSEDATQAD---LQTAQDLLDTLRANFDRCVGMAANMIGVAKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + I+ +V NP+II+ +F +EGCLS+ R V R I V+Y + N Sbjct: 56 IAINDNGKY-----LVMFNPEIISKFGEFET-EEGCLSLDGERKTV-RYKTIKVKYFNEN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + A +QHE+DH NGIL Sbjct: 109 FKQIKRSFSDFTAQIIQHEIDHCNGILI 136 >gi|184155075|ref|YP_001843415.1| peptide deformylase [Lactobacillus fermentum IFO 3956] gi|260663619|ref|ZP_05864508.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] gi|238692958|sp|B2GBA3|DEF_LACF3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|183226419|dbj|BAG26935.1| formylmethionine deformylase [Lactobacillus fermentum IFO 3956] gi|260551845|gb|EEX24960.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] Length = 189 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 20/160 (12%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRLV 59 +LR + + + + L +++E + + G+GLAA Q+ V ++ Sbjct: 16 VLRDYAAKVSFPLTEEEQQLAKDLMEYLEISQDEELAEKYGLRAGVGLAAPQVNVSKQMA 75 Query: 60 VIDLQ-DHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADVKRSAFITV 112 + + D P+ V INP II+ S EGCLS+ D V R IT+ Sbjct: 76 AVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSVDRDIAGYVPRHDRITL 135 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +Y D + + A QHE+DHL+G+LF DH+++ Sbjct: 136 KYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175 >gi|15901306|ref|NP_345910.1| peptide deformylase [Streptococcus pneumoniae TIGR4] gi|111657373|ref|ZP_01408130.1| hypothetical protein SpneT_02001427 [Streptococcus pneumoniae TIGR4] gi|148990264|ref|ZP_01821475.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|149007273|ref|ZP_01830931.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|149011684|ref|ZP_01832880.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|168486151|ref|ZP_02710659.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00] gi|168491354|ref|ZP_02715497.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|225857082|ref|YP_002738593.1| peptide deformylase [Streptococcus pneumoniae P1031] gi|225860775|ref|YP_002742284.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298230951|ref|ZP_06964632.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254975|ref|ZP_06978561.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502590|ref|YP_003724530.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|307126974|ref|YP_003879005.1| peptide deformylase [Streptococcus pneumoniae 670-6B] gi|17432945|sp|Q9F2F0|DEF_STRPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767606|sp|C1CLF5|DEF_STRZP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767607|sp|C1CQR2|DEF_STRZT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|11125374|emb|CAC15392.1| polypeptide deformylase [Streptococcus pneumoniae] gi|14972945|gb|AAK75550.1| peptide deformylase [Streptococcus pneumoniae TIGR4] gi|15858850|gb|AAK13240.1| peptide deformylase DefB [Streptococcus pneumoniae] gi|147761077|gb|EDK68045.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|147764115|gb|EDK71047.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|147924403|gb|EDK75493.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|183570800|gb|EDT91328.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00] gi|183574326|gb|EDT94854.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|225726126|gb|ACO21978.1| peptide deformylase [Streptococcus pneumoniae P1031] gi|225727795|gb|ACO23646.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298238185|gb|ADI69316.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|306484036|gb|ADM90905.1| peptide deformylase [Streptococcus pneumoniae 670-6B] gi|327389641|gb|EGE87986.1| peptide deformylase [Streptococcus pneumoniae GA04375] gi|332074778|gb|EGI85252.1| peptide deformylase [Streptococcus pneumoniae GA17545] Length = 203 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR ++ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + + NPKI++ S + EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189 >gi|319745793|gb|EFV98087.1| peptide deformylase [Streptococcus agalactiae ATCC 13813] Length = 204 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDN-------------MLEVMYSTDGIGLAAVQ 51 ++ +P LR+V+ + S+ ++ M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99 + + R++ + + + + NP V NPK+++ S D EGCLS+ + Sbjct: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +T+ Y D + + G + +QHE+DH++GI+F D ++ Sbjct: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190 >gi|86742919|ref|YP_483319.1| formylmethionine deformylase [Frankia sp. CcI3] gi|86569781|gb|ABD13590.1| formylmethionine deformylase [Frankia sp. CcI3] Length = 549 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 13/159 (8%) Query: 1 MVKKPLVIFPDPILRRVSRP---------IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQ 51 M +V + ILR+ +RP ++ +++ + ++ + + G+G+AA Q Sbjct: 372 MAAVGIVQEGEAILRQPARPFALPNEAEDARRVVAELSSALERVSALHTFGKGLGIAAPQ 431 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +G+ ++ + + +NP +I S + EGCLS D R V R + Sbjct: 432 VGINRAAAIVRTAG----GDTLTLLNPSVIETSRETDEQYEGCLSFFDVRGLVPRPLELH 487 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V + D + I LA + HE+DHL+G L+ D + Sbjct: 488 VEHTDIDGNRHITVYRQGLARLVAHEIDHLHGQLYTDRM 526 >gi|162448037|ref|YP_001621169.1| peptide deformylase [Acholeplasma laidlawii PG-8A] gi|161986144|gb|ABX81793.1| peptide deformylase [Acholeplasma laidlawii PG-8A] Length = 192 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 21/168 (12%) Query: 6 LVIFPDPILRRVSRPI----EKINSDI-MNLI--------DNMLEVMYSTDGIGLAAVQI 52 ++ P L S+P+ + + D+ +LI D M++ +GLAA QI Sbjct: 4 IIREGHPSLTTPSKPVLLPLSQKDIDLGKSLIEYVKNSQDDAMVKKHRLRPSVGLAAPQI 63 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIPD-YRADVKRSAF 109 L R+ + ++D V INP+I+ T + + EGCLS+ R Sbjct: 64 NELKRMFAMHVEDMDGTLYSYVMINPEIVGHTHEETYLPGGEGCLSVDRATSGLTPRYYG 123 Query: 110 ITVRYMDCNA-----QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I VR + + + +G A QHE DHL+GI+F L Sbjct: 124 IMVRGYHLDFESLTAKPIELTLEGYPAIVFQHEYDHLDGIMFTSKLYP 171 >gi|228476502|ref|ZP_04061192.1| peptide deformylase [Streptococcus salivarius SK126] gi|228251923|gb|EEK10969.1| peptide deformylase [Streptococcus salivarius SK126] Length = 204 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + M+ E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTFPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99 + + R++ + + + NP + NPK++ S + EGCLS+ D Sbjct: 78 LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGDGEGCLSVDRD 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y + + Q + G + +QHE+DH NGI+F D +++ Sbjct: 138 VPGYVVRHARVTVEYFNKEGEKQRVKLRGYNSIVVQHEIDHTNGIMFYDRINK 190 >gi|153952996|ref|YP_001393761.1| Def1 [Clostridium kluyveri DSM 555] gi|219853653|ref|YP_002470775.1| hypothetical protein CKR_0310 [Clostridium kluyveri NBRC 12016] gi|146345877|gb|EDK32413.1| Def1 [Clostridium kluyveri DSM 555] gi|219567377|dbj|BAH05361.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 161 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYS-----TDGIGLAAVQIGVL 55 + K +++ + L R S P+E+ + D+ I N+ + + G +AA QIGV Sbjct: 1 MIKEILLLGNYDLYRKSSPVEEKDIDLIKQTISNLHDTLIDFRKKYNAGRAIAAPQIGVF 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + + + P++FINP + + + + C+S PD VKR TV Y Sbjct: 61 KRLIYMYIDE------PLIFINPILTFPNKEMMEVMDDCMSFPDLLVKVKRFKNCTVTYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D N + I +G L+ +QHE DHL+GIL K Sbjct: 115 DMNFKENSIKFEGDLSELIQHEYDHLDGILATMRAIDSK 153 >gi|118586207|ref|ZP_01543674.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163] gi|118433357|gb|EAV40056.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163] Length = 197 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 21/170 (12%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51 + +P+LR ++P+ ++ +I L MLE + G+GLA Q Sbjct: 15 DITRDGNPVLRAKAQPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQ 74 Query: 52 IGVLYRLVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRAD 103 + ++ + + ++ + NPKI S + + EGCLS D Sbjct: 75 VNKSLQMTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALEAGEGCLSKDEDTPGI 134 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R+ ITV Y D N +H I A QHE+DHL GI++ DH++ L Sbjct: 135 VLRADKITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 184 >gi|295099934|emb|CBK89023.1| peptide deformylase [Eubacterium cylindroides T2-87] Length = 184 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +++ DP +R+ SR +E +N + L++ +LE + ++ +G+AA+Q+ Sbjct: 8 IILDTDPRIRQKSRKVELPLNQEDKELLEALLEYVRNSTDEEIAERDNLEPAVGIAAIQV 67 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYR-ADVKRSAF 109 GV +L+ + + D + NPKII+ S + EGCLS+ + V R A Sbjct: 68 GVPKKLIAVVVPDEEGNVQEVALANPKIISESVQNAYLDNGEGCLSVKEVHEGHVFRHAR 127 Query: 110 ITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I VR D + I A+G A LQHE+DHL+GILF D + + Sbjct: 128 IKVRGYDLIKDDNVTISAEGYFAIALQHEIDHLSGILFYDRIDK 171 >gi|227514799|ref|ZP_03944848.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] gi|227086847|gb|EEI22159.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] Length = 189 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 20/160 (12%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRLV 59 +LR + + + + L +++E + + G+GLAA Q+ + ++ Sbjct: 16 VLRDYAAKVSFPLTEEEQQLAKDLMEYLEISQDEELAEKYGLRAGVGLAAPQVNISKQMA 75 Query: 60 VIDLQ-DHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADVKRSAFITV 112 + + D P+ V INP II+ S EGCLS+ D V R IT+ Sbjct: 76 AVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSVDRDIAGYVPRHDRITL 135 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +Y D + + A QHE+DHL+G+LF DH+++ Sbjct: 136 KYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175 >gi|312863990|ref|ZP_07724226.1| peptide deformylase [Streptococcus vestibularis F0396] gi|322517594|ref|ZP_08070462.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] gi|311100403|gb|EFQ58610.1| peptide deformylase [Streptococcus vestibularis F0396] gi|322123759|gb|EFX95337.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] Length = 204 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + M+ E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTFPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99 + + R++ + + + NP + NPK++ S + EGCLS+ D Sbjct: 78 LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGDGEGCLSVDRD 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y + + Q + G + +QHE+DH NGI+F D +++ Sbjct: 138 VPGYVVRHARVTVEYYNKEGEKQRVKLRGYNSIVVQHEIDHTNGIMFYDRINK 190 >gi|158320246|ref|YP_001512753.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs] gi|158140445|gb|ABW18757.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs] Length = 164 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD-----GIGLAAVQIGVL 55 + + ++ +P L S + + + + + ++ + + G +AA QIG+ Sbjct: 1 MVREILKLGNPQLYETSEEVVEADIAFLSEWVQDLHDTLMDYRERYGAGRAVAAPQIGIK 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + P +FINP + D+ + C+S P V+R + Y Sbjct: 61 KRLLYMFTD------QPYIFINPVMSFPEDEKYTLLDDCMSFPGLIVKVERYKRAEISYF 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + Q +Y G L+ LQHE DHL GIL K + ++M + Sbjct: 115 DKDFNPQKMYLKGDLSELLQHEYDHLEGILATMRAVDNK-SLYLEQMKR 162 >gi|55820249|ref|YP_138691.1| peptide deformylase [Streptococcus thermophilus LMG 18311] gi|55822139|ref|YP_140580.1| peptide deformylase [Streptococcus thermophilus CNRZ1066] gi|116627103|ref|YP_819722.1| peptide deformylase [Streptococcus thermophilus LMD-9] gi|81676625|sp|Q5M1R9|DEF_STRT1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81676774|sp|Q5M6B0|DEF_STRT2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122268294|sp|Q03MP6|DEF_STRTD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|55736234|gb|AAV59876.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311] gi|55738124|gb|AAV61765.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066] gi|116100380|gb|ABJ65526.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus LMD-9] gi|312277572|gb|ADQ62229.1| Peptide deformylase [Streptococcus thermophilus ND03] Length = 204 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + M+ E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTLPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSVYQ--EGCLSIP-D 99 + + R++ + + + + NP + NPK++ S + EGCLS+ D Sbjct: 78 LDISKRIIAVLVPNPEDAKGNPPKEAYSLQEIMYNPKVVAHSVQEAALGNGEGCLSVDRD 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +T+ Y + + + I G + +QHE+DH NGI+F D +++ Sbjct: 138 VPGYVVRHARVTIEYFNKEGEKKRIKLRGYDSIVVQHEIDHTNGIMFYDRINK 190 >gi|328676563|gb|AEB27433.1| Peptide deformylase [Francisella cf. novicida Fx1] Length = 204 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I +++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 16 NKVLYQKCKPVADIQSAEIQNIITEMHEKM-QCNGIGLAANQIGYPYQIFMIEF-DSSNA 73 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS R + I + + + Sbjct: 74 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 133 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I + + A QHE +HL G +++D Sbjct: 134 KIIGKLESIAAVIFQHEFNHLLGSVYVD 161 >gi|322373777|ref|ZP_08048312.1| peptide deformylase [Streptococcus sp. C150] gi|321277149|gb|EFX54219.1| peptide deformylase [Streptococcus sp. C150] Length = 204 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + M+ E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTLPLSDEDIILGEKMMQFLRNSQDPIIAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99 + + R++ + + + NP + NPK++ S + EGCLS+ D Sbjct: 78 LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGEGEGCLSVDRD 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y + + + I G + +QHE+DH NGI+F DH+++ Sbjct: 138 VPGYVVRHARVTVEYFNKEGEKKRIKFRGYNSIVVQHEIDHTNGIMFYDHINK 190 >gi|24378660|ref|NP_720615.1| peptide deformylase [Streptococcus mutans UA159] gi|39930891|sp|Q8DWC2|DEF_STRMU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|24376521|gb|AAN57921.1|AE014866_3 putative polypeptide deformylase [Streptococcus mutans UA159] Length = 204 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR V++ + +N D + L + ML E M G+GLAA Q Sbjct: 18 DIIREGHPTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN---------PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100 + + R++ + + + + V NP+II S D EGCLS+ Sbjct: 78 LDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R + +T+ Y D N+ + + G + +QHE+DH NGI+F D ++ I Sbjct: 138 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINEKNPFEIK 197 Query: 160 KKM 162 + + Sbjct: 198 EGL 200 >gi|111225848|ref|YP_716642.1| putative polypeptide deformylase [Frankia alni ACN14a] gi|111153380|emb|CAJ65136.1| hypothetical protein; putative Polypeptide deformylase [Frankia alni ACN14a] Length = 550 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Query: 1 MVKKPLVIFPDPILRRVSR----PIEKINSDIMNLIDNMLEVMYS-------TDGIGLAA 49 M +V DP L + +R P+E ++ ++ + M G+G+AA Sbjct: 373 MAAAGIVQVGDPSLHQPARSFELPVEAEDA--RRVVAELSSAMERVSALHTFGKGMGIAA 430 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 QIG+ ++ D + + +NP++I + EGCLS D R V RS Sbjct: 431 PQIGINRAAAIVRSAD----GDILTLLNPRVIESVPESDEQYEGCLSFFDVRGIVPRSLE 486 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V + D + + I LA + HE+DHL+G L+ D + Sbjct: 487 LHVEHTDTSGRRHITVYRQGLARLVAHEIDHLHGRLYTDRMRP 529 >gi|284006808|emb|CBA72075.1| polypeptide deformylase [Arsenophonus nasoniae] Length = 219 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIIT-FSDDFSVYQEGCL 95 GLAA Q+G +++V+I + A K P + INP + EGC Sbjct: 85 AGLAAPQVGYPFKIVIIQIPPEAKEKRKDVYDTLSPTILINPVYTPILNAGQIKDWEGCF 144 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 SIP+ +V R I + +A G LA +QHE+DHLNG L+ID+L R Sbjct: 145 SIPNKMGEVYRYNEIYYEAYTLEGKKISAHAKGFLARLIQHEIDHLNGKLYIDYLCDDCR 204 Query: 156 DMITKKMSKLVQLRD 170 + T + ++++ + Sbjct: 205 FVSTTEALNIMKIEE 219 >gi|222152449|ref|YP_002561624.1| peptide deformylase [Streptococcus uberis 0140J] gi|254767604|sp|B9DTD6|DEF_STRU0 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|222113260|emb|CAR40782.1| polypeptide deformylase [Streptococcus uberis 0140J] Length = 204 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR+ + + ++ + + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRKEASEVSLPLSDEDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIPD- 99 + + R++ + + + NP + NPKI+ S + EGCLS+ Sbjct: 78 LDISKRIIAVLVPNMEDSEGNPPKEAYSLQEIMYNPKIVAHSVQEAALADGEGCLSVDRL 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R + +TV Y D I G A +QHE+DH+NGI+F D ++ I Sbjct: 138 VEGYVVRHSRVTVDYYDKKGDKHRIKLKGYNAIVVQHEIDHINGIMFYDRINSQNPFAIK 197 Query: 160 KKM 162 + M Sbjct: 198 EGM 200 >gi|289645164|ref|ZP_06477181.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505026|gb|EFD26107.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 529 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 13/161 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQ 51 M +V IL + +RP + ++ +++ + I+ + + G+G+AA Q Sbjct: 351 MAAVGIVQQGAEILSKPARPFDLPAEAEDARRVVAELSSAIERVSALHTFGKGMGIAAPQ 410 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +G+ ++ D + + +NP +I S + EGCLS D R V R + Sbjct: 411 VGINRAAAIVRTVD----GDTITLLNPTVIEASPETDEQYEGCLSFFDVRGLVPRPLTLH 466 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V + D + +II + LA + HE+DHL+G L+ D + Sbjct: 467 VEHADIDGTRRIIAFEKGLARLVAHEIDHLDGHLYTDKMRP 507 >gi|254372465|ref|ZP_04987954.1| hypothetical protein FTCG_00025 [Francisella tularensis subsp. novicida GA99-3549] gi|151570192|gb|EDN35846.1| hypothetical protein FTCG_00025 [Francisella novicida GA99-3549] Length = 210 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I +++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 22 NKVLYQKCKPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS R + I + + + Sbjct: 80 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 139 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 140 KITGKLDSIAAVIFQHEFNHLLGSVYVD 167 >gi|311745501|ref|ZP_07719286.1| peptide deformylase [Algoriphagus sp. PR1] gi|126578054|gb|EAZ82274.1| peptide deformylase [Algoriphagus sp. PR1] Length = 161 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 12/165 (7%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55 ++ DP L V P+ E++ L + M ++ + G G+AA Q+G++ Sbjct: 3 TIHDILKLGDPRLYEVCDPVLKSELEQVPIWTQQLHEAMEDIRKAYGFGRGIAAPQLGIM 62 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R+ ++L P + +NP++ S++ + C+S P V+R +T+ Y Sbjct: 63 KRMFYLNLD------KPYIILNPELKNPSEEMFELWDDCMSFPKLLVKVRRHQSLTLSYR 116 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D N Q G + +QHE DHL+G+L K + Sbjct: 117 DQNWTLQEWKVSGENSELIQHEYDHLDGVLCTMRAIDQKSFRWKE 161 >gi|255027127|ref|ZP_05299113.1| peptide deformylase [Listeria monocytogenes FSL J2-003] Length = 131 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 3/114 (2%) Query: 43 DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-D 99 G+G+AA Q+ V R + I + D R V NPKI + S + EGCLS+ + Sbjct: 5 GGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDRE 64 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V RS +T+ D N + G A +QHE+DHLNGI+F DH+++ Sbjct: 65 VPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 118 >gi|194396894|ref|YP_002038089.1| peptide deformylase [Streptococcus pneumoniae G54] gi|238690834|sp|B5E5U9|DEF_STRP4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194356561|gb|ACF55009.1| peptide deformylase [Streptococcus pneumoniae G54] Length = 203 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR ++ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAIAEKVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSVYQEG--CLSIP-DY 100 + + R++ + + + + NPKI++ S + EG CLS+ + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEXCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189 >gi|238923534|ref|YP_002937050.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|238875209|gb|ACR74916.1| peptide deformylase [Eubacterium rectale ATCC 33656] Length = 136 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + K +V DP+ L + S + + ++ ++L+ + + +G+AA IGV + Sbjct: 1 MVKKIVK--DPLFLAQKSVDATEPD---KQVVTDLLDTLRANLDHCVGMAANMIGVKKNI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ INP I S + +EGCLS+ R R I V Y+D + Sbjct: 56 IVVAAGPFQ-----FAMINPVITKKSGAYQT-EEGCLSLEGVR-PCTRYQEIEVDYLDQS 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH NGI+ Sbjct: 109 FKKQHGKYSGWTAQIIQHEIDHCNGIVI 136 >gi|302779750|ref|XP_002971650.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii] gi|300160782|gb|EFJ27399.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii] Length = 166 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 15/161 (9%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ DP LR + I + + L ML+V Y DG+GL+A Q+GV RL+V + + Sbjct: 8 IVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARLMVFNPEG 64 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQ----EGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + VF+NP I+ F + +S YR+++K D N + Sbjct: 65 ERGKGKEYVFVNPMIVKFGKEREARFSFIACVFVSRDRYRSELK--------AQDINGKK 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 G A +HE DHL G+L+ID ++ + I +++ Sbjct: 117 FGTAFRGWTAGIFRHEYDHLEGVLYIDQMTPKSLNSIGQEL 157 >gi|322388290|ref|ZP_08061894.1| peptide deformylase [Streptococcus infantis ATCC 700779] gi|321140962|gb|EFX36463.1| peptide deformylase [Streptococcus infantis ATCC 700779] Length = 136 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVV 60 K ++ L +VS+P + + L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSQPASQEDLP---LAKDLQDTLLANRESCVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ PMV NP + +F + +EGCLS+ R R ITV Y D + Q Sbjct: 58 FNIG-----MIPMVMFNPVLQSFEGSYET-EEGCLSLTGVR-PTTRYEKITVSYRDIHWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL GI+ Sbjct: 111 EQTITLTGFPAQICQHELDHLEGIII 136 >gi|315222331|ref|ZP_07864237.1| peptide deformylase [Streptococcus anginosus F0211] gi|315188664|gb|EFU22373.1| peptide deformylase [Streptococcus anginosus F0211] Length = 204 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 25/180 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V++ + + ++ + N M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKDVTFPLTEQEVILGEKMLQFLRNSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99 + + R++ + + + NP V N K++ S D EGCLS+ + Sbjct: 78 LDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKVVAHSVQDAALAEGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y D + I G + +QHE+DH NGI+F D ++ + I Sbjct: 138 VPGYVVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRINEKEPFAIK 197 >gi|284036700|ref|YP_003386630.1| formylmethionine deformylase [Spirosoma linguale DSM 74] gi|283815993|gb|ADB37831.1| formylmethionine deformylase [Spirosoma linguale DSM 74] Length = 168 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 13/157 (8%) Query: 5 PLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYRL 58 L++ DP L + P+ E + + + ++ VM G G+AA Q+G++ RL Sbjct: 6 DLLLLGDPRLYQTCEPVLESELPLVPDWVADLHNVMEEIRAKYQFGRGIAAPQLGIMKRL 65 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + +++ P V INP+++ SD+ + C+S P+ V+R +T+ Y D + Sbjct: 66 IYLNVD------RPQVIINPELVAVSDETDELWDDCMSFPNLLVRVRRHKKLTLTYRDEH 119 Query: 119 AQHQIIYADGL-LATCLQHELDHLNGILFIDHLSRLK 154 Q ++ +QHE DHLNG L + Sbjct: 120 WQTHTWDVTDWRISELIQHEYDHLNGFLCTMRAIDER 156 >gi|238922278|ref|YP_002935792.1| hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750] gi|238873950|gb|ACR73658.1| Hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750] Length = 136 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + K +V DP L + S + + ++ ++L+ + + +G+AA IGV + Sbjct: 1 MVKKIVK--DPFFLAQKSVDATESD---KQVVTDLLDTLIANLDHCVGMAANMIGVKKNI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ INP I S ++ +EGCLS+ R R I V Y+D N Sbjct: 56 IVVAAGPFQ-----FPMINPVITNKSGEYQT-EEGCLSLEGVR-PCTRYQDIEVDYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH NG++ Sbjct: 109 FKKQHRKYSGWTAQIIQHEIDHCNGVVI 136 >gi|330686209|gb|EGG97823.1| peptide deformylase [Staphylococcus epidermidis VCU121] Length = 164 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-D 99 G+GLAA QI V R++ + L D + + +NPK++++S + + EGCLS+ + Sbjct: 39 GVGLAAPQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDEN 98 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R +T++ D + + G A QHE+DHLNGI+F DH+ Sbjct: 99 IPGLVHRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYDHIDD 151 >gi|118497100|ref|YP_898150.1| peptide deformylase [Francisella tularensis subsp. novicida U112] gi|208778893|ref|ZP_03246239.1| polypeptide deformylase [Francisella novicida FTG] gi|118423006|gb|ABK89396.1| peptide deformylase [Francisella novicida U112] gi|208744693|gb|EDZ90991.1| polypeptide deformylase [Francisella novicida FTG] Length = 211 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 12/148 (8%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I +++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ Sbjct: 23 NKVLYQKCKPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80 Query: 70 KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120 + P VFINPKI S + GCLS R + I + + + Sbjct: 81 RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 140 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 141 KITGKLDSIAAVIFQHEFNHLLGSVYVD 168 >gi|227509076|ref|ZP_03939125.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191463|gb|EEI71530.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 136 Score = 120 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + KP+ +P+ L + ++P +S +I ++L+ + + +G+AA IGV R+ Sbjct: 1 MIKPINH--NPLTLSQRAQPATSADS---QIITDLLDTLRANTQICVGMAANMIGVNKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + P+ +NP+I+ S F+ +EGCLS+ R+ R ITV Y+D N Sbjct: 56 IVVQMG-----MLPVALVNPEIVEKSVPFAT-KEGCLSLEGQRS-TTRYKEITVTYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH GIL Sbjct: 109 FRSHRQGFSDWIAQIIQHEVDHCEGILI 136 >gi|294790517|ref|ZP_06755675.1| peptide deformylase [Scardovia inopinata F0304] gi|294458414|gb|EFG26767.1| peptide deformylase [Scardovia inopinata F0304] Length = 230 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 64/175 (36%), Gaps = 33/175 (18%) Query: 5 PLVIFPDPILRRVS-------RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 P+V +P+LR + +P + L M M + G+GLA QIG+ Sbjct: 30 PIVQMGEPVLRLKTVAYCGQLKP-----KTLEQLKKVMRRTMLNAPGVGLAGPQIGLGLS 84 Query: 58 LVVID--------------------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLS 96 L V++ P + INP D + + EGCLS Sbjct: 85 LAVVEDHIRDLSDDEQAEADEAAASADPRGIADFPFHIIINPWYEPMDDASASFFEGCLS 144 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+A KR I + D +A A QHE DHL G ++ID Sbjct: 145 FDGYQAVRKRWLNIKAHWFDEDAVEHEAELHQWPARIFQHETDHLKGEVYIDKAE 199 >gi|224283284|ref|ZP_03646606.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171] Length = 136 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 7/135 (5%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P + N + ++ + + + G +G+AA IGV R++V QD + +N Sbjct: 7 LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIVF--QDKENNRN 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + NP+II SD F EGCLS+ R R ITV Y + + DG A Sbjct: 65 -AIMFNPRIIAGSDPFDTA-EGCLSLDGER-PTTRYQSITVTYQARSGREYTTAFDGFTA 121 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH+NGI+ Sbjct: 122 QIIQHEIDHVNGIII 136 >gi|167757205|ref|ZP_02429332.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402] gi|237735710|ref|ZP_04566191.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167703380|gb|EDS17959.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402] gi|229381455|gb|EEO31546.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 137 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + +V L + S P K + + + ++L+ + ++T +G+AA IG+ ++ Sbjct: 1 MIREIVS-DQFRLSQKSLPATKEDLPV---VQDLLDTIIAHATGCVGMAANMIGINKNII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +++ N +V +NP+II +EGCLS + KR I V Y D + Sbjct: 57 IVNDDG-----NYLVMLNPEIIKTMGRLYETEEGCLSHIGVK-KTKRYEKIKVAYYDVDF 110 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + +I A +QHE+DH NGIL Sbjct: 111 KKKIKTFSNYTAQIIQHEIDHCNGILI 137 >gi|313884730|ref|ZP_07818486.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] gi|312620098|gb|EFR31531.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] Length = 188 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 22/173 (12%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48 K V DPIL R + + ++++ L +M + + ++ G+GLA Sbjct: 3 TMKDFVPEDDPILHREAAEVSFPLSAEDRQLALDMRQFLINSQNDEVAEKYDLRAGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQ------DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSI-PD 99 A Q+G ++ + L+ D + INP+II S + EGCLS+ + Sbjct: 63 APQLGYDKKIFCVYLEAYDEENDSTEVMMDEIVINPRIIKHSVKKAALKDGEGCLSVNRE 122 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R +T+RY + + I A QHE DHL GI+F +H+S Sbjct: 123 VPGLVPRPKRVTLRYYNLDGDELEIKLTDYEAMVFQHEFDHLKGIMFYEHISD 175 >gi|227524969|ref|ZP_03955018.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] gi|227087881|gb|EEI23193.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] Length = 136 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + KP+ +P+ L + ++P ++ +I ++L+ +++ +G+AA IGV R+ Sbjct: 1 MIKPINH--NPLTLSQRAQPATLADT---QIITDLLDTLHANTQICVGMAANMIGVNKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + R P+ +NP+I+ S F+ +EGCLS+ R+ R ITV Y+D N Sbjct: 56 IVVQM-----RMLPVALVNPEIVEKSVPFAT-KEGCLSLEGQRS-TTRYKEITVTYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH GIL Sbjct: 109 FRSHRQGFSDWIAQIIQHEVDHCEGILI 136 >gi|312870530|ref|ZP_07730648.1| peptide deformylase [Lactobacillus oris PB013-T2-3] gi|311093927|gb|EFQ52253.1| peptide deformylase [Lactobacillus oris PB013-T2-3] Length = 136 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + KP+ + ILR+VS+P K + + + + L + +G+AA IGV R+++ Sbjct: 1 MIKPINRDVN-ILRQVSQPASKADLPVAQDLRDTL-TANADRCVGMAANMIGVTKRIIIA 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 L +V NP+I+ S + V QEGCLS+ R+ R I VR+ + + Sbjct: 59 SLGPLQ-----VVMFNPQIVAKSGPYQV-QEGCLSLSGQRS-TTRFQKIRVRFTNEQWEQ 111 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 Q + A +QHE DH NGIL Sbjct: 112 QELTFTAFPAEIIQHEFDHCNGILI 136 >gi|221108715|ref|XP_002169101.1| PREDICTED: similar to CG31373 CG31373-PA, partial [Hydra magnipapillata] Length = 143 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 12/114 (10%) Query: 50 VQIGVLYRLVVIDLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSI 97 QIG+ R V+D VFIN +II D Y+EGCLSI Sbjct: 1 PQIGMDIRFFVVDGTPINEGAETEEDIDPSLIDFKKVFINAEIIEEDGDEWAYEEGCLSI 60 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 P RADV R F+T+RY D + +GL A +QHE DH++GILF DHL+ Sbjct: 61 PGVRADVYRPEFVTIRYFDTDWVEHTETYEGLAARIIQHEYDHIDGILFTDHLT 114 >gi|290579649|ref|YP_003484041.1| putative polypeptide deformylase [Streptococcus mutans NN2025] gi|254996548|dbj|BAH87149.1| putative polypeptide deformylase [Streptococcus mutans NN2025] Length = 204 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR V++ + ++ D + L + ML E M G+GLAA Q Sbjct: 18 DIIREGHPTLRAVAQDVTFPLSEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100 + + R++ + + NP + NP+II S D EGCLS+ Sbjct: 78 LDISKRIIAVLIPNPEDEDGNPPKEAYALKEIMYNPRIIAHSVQDAALADGEGCLSVDRV 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R + +T+ Y D N+ + + G + +QHE+DH NGI+F D ++ I Sbjct: 138 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINEKNPFEIK 197 Query: 160 KKM 162 + + Sbjct: 198 EGL 200 >gi|260584847|ref|ZP_05852592.1| peptide deformylase [Granulicatella elegans ATCC 700633] gi|260157504|gb|EEW92575.1| peptide deformylase [Granulicatella elegans ATCC 700633] Length = 137 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 +KK + DP L + + P I +I ++ + + + +GLAA IG + Sbjct: 1 MKKEI--MKDPFFLSQKAIPANPITD--KQVIVDLQDTLRANRDRCVGLAANMIGSHKAI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +++ +V +NP I S + +EGCLS ++ R I VRY D Sbjct: 57 IIVAAGPFD-----IVMVNPVITKKSQPYQT-EEGCLSHTGMKS-TTRYQKIEVRYQDAT 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + A +QHE+DHL GIL Sbjct: 110 GKTHTGTFTEFTAQVIQHEIDHLQGILI 137 >gi|299538334|ref|ZP_07051617.1| peptide deformylase [Lysinibacillus fusiformis ZC1] gi|298725921|gb|EFI66513.1| peptide deformylase [Lysinibacillus fusiformis ZC1] Length = 191 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRLV 59 ILR+ ++ + + + N + ML+ + ++ G GL+A QIGV R+ Sbjct: 22 ILRKQTQEVPIPVTTVDRNTLLAMLQYLKNSQNPTLAKKYKLRPGSGLSANQIGVNKRMF 81 Query: 60 VIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITVR 113 + D M+ INPKII+ S + EGCLS+ P + V R I V+ Sbjct: 82 AVLFDDQE-----MMLINPKIISHSLNMIYLPEGEGCLSVNRPVPGF---VPRYERIKVK 133 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D + I+ G A +QHE+DHLNGI+F D +++ Sbjct: 134 AYDIDGHESIVQLQGYGAIVVQHEIDHLNGIMFYDRINKE 173 >gi|33357294|pdb|1LM6|A Chain A, Crystal Structure Of Peptide Deformylase From Streptococcus Pneumoniae Length = 215 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 24/172 (13%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 30 DIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 89 Query: 52 IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100 + + R++ + + + + NPKI++ S + EG LS+ + Sbjct: 90 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGXLSVDRNV 149 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 150 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 201 >gi|193216926|ref|YP_002000168.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1] gi|193002249|gb|ACF07464.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1] Length = 185 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 19/173 (10%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML---------EVMYSTDGIGLAAVQIGVL 55 L+ P+ LR+ S I + + +LI M+ E +G+AAVQ G+L Sbjct: 9 LIELPNKTLRQKSNDITLPLTKEDEDLIQKMIFHVDDSQEKET-KFRPAVGVAAVQYGIL 67 Query: 56 YRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKRSA 108 + I L+D + INP+++ S+ EG CLS+ P V R A Sbjct: 68 KNVFYILLKDENNEVLFKDALINPQMVAHSEHKLALDEGEGCLSVNQNDPGQAGYVPRYA 127 Query: 109 FITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + ++ Y + + G LA QHE DHL G LFIDHL++ + + K Sbjct: 128 RVVMKAYSYYEKKEKTYDVSGYLAIIFQHEYDHLFGKLFIDHLNKKEPWKVPK 180 >gi|319939890|ref|ZP_08014245.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] gi|319810901|gb|EFW07220.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] Length = 204 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V++ + + + L + ML E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKDVTFPLTEQEVILGEKMLQFLRNSQDPATAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99 + + R++ + + + NP V N KI+ S D EGCLS+ + Sbjct: 78 LDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKIVAHSVQDAALAEGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R A +TV Y D + I G + +QHE+DH NGI+F D ++ I Sbjct: 138 VPGYVVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRINEKDPFAIK 197 Query: 160 KKM 162 + M Sbjct: 198 EGM 200 >gi|310287644|ref|YP_003938902.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|311064553|ref|YP_003971278.1| peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313140433|ref|ZP_07802626.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171] gi|309251580|gb|ADO53328.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|310866872|gb|ADP36241.1| Fms Peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313132943|gb|EFR50560.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171] Length = 141 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 7/135 (5%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P + N + ++ + + + G +G+AA IGV R++V QD + +N Sbjct: 12 LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIVF--QDKENNRN 69 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + NP+II SD F EGCLS+ R R ITV Y + + DG A Sbjct: 70 -AIMFNPRIIAGSDPFDTA-EGCLSLDGER-PTTRYQSITVTYQARSGREYTTAFDGFTA 126 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH+NGI+ Sbjct: 127 QIIQHEIDHVNGIII 141 >gi|308801120|ref|XP_003075341.1| Peptide deformylase (ISS) [Ostreococcus tauri] gi|116061895|emb|CAL52613.1| Peptide deformylase (ISS) [Ostreococcus tauri] Length = 243 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 30/172 (17%) Query: 4 KPLVIFPDPILRRVSRPIE--KINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +V P LR ++ I+ +I+S +I LI M+ VM G+GLAA Q+G+ R++V Sbjct: 34 RDVVQAGAPALRDRAKEIDPREIDSAEIQELIGEMVRVMR-ARGVGLAAPQLGIRKRVIV 92 Query: 61 IDLQDHA-----------HRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 ++ + ++ P V INP + D +++ EGCLS+ YRA Sbjct: 93 LEDTEEGMSDSSAEELASQKRAPFACTVIINPTLERVGDASAIFFEGCLSVAGYRAC--- 149 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A G A LQHELDHL+G+L+ D + + Sbjct: 150 ---------AATGNRSIYIATGWQARILQHELDHLDGVLYTDRMESRTFRRV 192 >gi|85860534|ref|YP_462736.1| peptide deformylase [Syntrophus aciditrophicus SB] gi|85723625|gb|ABC78568.1| peptide deformylase [Syntrophus aciditrophicus SB] Length = 189 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 13/166 (7%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR- 69 ILR SR + ++ + + I +++ + D +GLAA QIG+ R+V+ + Sbjct: 23 ILRTPSRDLPIPLSREARDQIQTLVDAFLERDDALGLAAPQIGINRRIVIFRNKGFDEEG 82 Query: 70 -----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 K+ + INP+I + EGCLS P + +V R + VR D + Sbjct: 83 WSKKEKDYDLLINPRITQTRGELVKGAEGCLSCPSIQVEVNRFPEVKVRAFDRHGNRISK 142 Query: 125 YADGLLATCLQHELDHLNGILFID-----HLSRLKRDMITKKMSKL 165 LA QHELDHL G L +D + R K+ + +++ Sbjct: 143 RYADFLARVAQHELDHLEGKLIVDCEGPVYFPREKKAFFERIFAQI 188 >gi|213026865|ref|ZP_03341312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 98 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 40/101 (39%), Positives = 70/101 (69%), Gaps = 3/101 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 ID+ + +R +V INP+++ S + + +EGCLSIP+ R Sbjct: 61 IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQR 98 >gi|323353371|ref|ZP_08087904.1| peptide deformylase [Streptococcus sanguinis VMC66] gi|322121317|gb|EFX93080.1| peptide deformylase [Streptococcus sanguinis VMC66] Length = 136 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR+ S + + + L ++ + + + + IGLAA +GV R+++ + Sbjct: 12 LRQPSEQASRED---LYLAQDLQDTLQANRENCIGLAANMVGVRKRVIIF-----LYGLV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P+V NP + + S + +EGCLS+ R +R ITV Y+D N Q Q + GL A Sbjct: 64 PVVMFNPVLRSKSGPYQT-EEGCLSLTGSR-PTQRYQEITVDYLDKNWQQQTMTLKGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GIL Sbjct: 122 QICQHELDHLEGILI 136 >gi|322784370|gb|EFZ11341.1| hypothetical protein SINV_03231 [Solenopsis invicta] Length = 239 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + IE +D +I ++ VM + D GL+ QIG+ +++ I+ Sbjct: 52 QVGDPVLRGRTMKIEPEVIRMADFQKVIKRLINVMRAYDAYGLSGPQIGLPWQIFAIECT 111 Query: 65 DH-----------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + AH N + +FINP++ E C SI Y A V R+ + Sbjct: 112 EKTMKGVEESVRKAHEMNVVPMTIFINPELKVIDYTPITLYEECASIQGYSAAVPRAYEV 171 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ++ +A+ A G A QHE DHL G L+I+ + Sbjct: 172 EITALNASAEQFTWRARGWSARIAQHEYDHLQGKLYIEKMD 212 >gi|218283087|ref|ZP_03489182.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989] gi|218216156|gb|EEC89694.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989] Length = 186 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 18/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K +++ D +R S P+ ++++ L+ ML+ + ++ +G+A Sbjct: 7 TSKDIILDTDERIRMQSEPVSLPLSNEDKELLQAMLDYVRNSQDDEIAKAEGLQPAVGIA 66 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYR-ADVK 105 AVQ+GVL +++ + + + + + +NPKII+ S + EGCLS+ V Sbjct: 67 AVQVGVLKQMIAVVIP-YEDGVDEVALVNPKIISESVQNAYLDNGEGCLSVKGEHPGHVF 125 Query: 106 RSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A I VR D ++ I A+G A CLQHE+DHL+G LF DH+ Sbjct: 126 RHARIKVRGYDLIQDKNVTISAEGYFAICLQHEIDHLSGTLFYDHID 172 >gi|300173110|ref|YP_003772276.1| peptide deformylase [Leuconostoc gasicomitatum LMG 18811] gi|299887489|emb|CBL91457.1| Peptide deformylase [Leuconostoc gasicomitatum LMG 18811] Length = 192 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 26/177 (14%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------D 43 M + + +LR+ + + ++ + L +M+ + + Sbjct: 1 MTIRFTMDKITRDGASVLRKTAASVPFPLSEEHAQLAKDMMTYLVISQDESQNEQYGLRP 60 Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQ--EGCL 95 G+GLAA Q+ R+ I + ++ NP II+ S EGCL Sbjct: 61 GVGLAAPQVNYSLRMASILVPSLDPHESDETPYFKGTIFNPTIISESIKRGALDVGEGCL 120 Query: 96 SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 S+ D V R+ ITVRY D +II A QHE+DHL+G L+ DH+ Sbjct: 121 SVDKDVPGFVPRADRITVRYQDETGATKIIKLRDYPAIVFQHEIDHLHGHLYYDHID 177 >gi|149038103|gb|EDL92463.1| component of oligomeric golgi complex 8 (predicted), isoform CRA_a [Rattus norvegicus] Length = 141 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 14/127 (11%) Query: 39 MYSTDGIGLAAVQIGVLYRLVVIDLQD--------------HAHRKNPMVFINPKIITFS 84 M +GL+A Q+GV +++V++ D V +NP + Sbjct: 1 MRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLD 60 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + EGC S+ + A V R + + +D + + A G A +QHE+DHL+G Sbjct: 61 SRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHGC 120 Query: 145 LFIDHLS 151 LFID + Sbjct: 121 LFIDKMD 127 >gi|154484915|ref|ZP_02027363.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC 27560] gi|149733868|gb|EDM49987.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC 27560] Length = 136 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59 + K +V I R ++P K + ++ ++++ + +G+AA IGV ++ Sbjct: 1 MVKKIVK-GKQIFARKAQPATKAD---KQVVTDLMDTLRENREICVGMAANMIGVNKSII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+ +NP I S +++ +EGCLS+ R + R I V Y++ N Sbjct: 57 VVAAGPFQ-----FAMVNPVITKKSGEYTT-EEGCLSLDGVRNCI-RYKEIEVDYLNENF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH NG++ Sbjct: 110 EPKHGKFSGYTAQIIQHEVDHCNGVVI 136 >gi|169827255|ref|YP_001697413.1| peptide deformylase [Lysinibacillus sphaericus C3-41] gi|168991743|gb|ACA39283.1| Peptide deformylase [Lysinibacillus sphaericus C3-41] Length = 192 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 17/156 (10%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRLV 59 +LR+ ++ + + + +++ +ML+ + ++ G GL+A QIGV R+ Sbjct: 22 LLRKQTQDVAIPVPLEDRHILFSMLQYLKNSQDPILTKKYKLRPGSGLSANQIGVDKRMF 81 Query: 60 VIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADVKRSAFITVRYMD 116 + +DH + M+FINPK+++ S + EGCLS+ V R I V+ Sbjct: 82 AVLFEDHDQKPE-MMFINPKVMSHSLNMIYLPEGEGCLSVNRPVHGFVPRYERIKVKAYT 140 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + Q I+ G + +QHE+DHLNGI+F D +++ Sbjct: 141 IDGQEFILSLKGYESIVVQHEIDHLNGIMFYDRINK 176 >gi|322392329|ref|ZP_08065790.1| peptide deformylase [Streptococcus peroris ATCC 700780] gi|321144864|gb|EFX40264.1| peptide deformylase [Streptococcus peroris ATCC 700780] Length = 141 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L +VSRP + + L ++ + + + +GLAA IGV R+++ +L Sbjct: 17 LSQVSRPASQEDLP---LAKDLQDTLQANKETCVGLAANMIGVQKRVIIFNLG-----MI 68 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 PMV NP + +F + +EGCLS+ R R ITV Y D + Q Q I G A Sbjct: 69 PMVMFNPVLQSFEGPYET-EEGCLSLAGVR-PTTRYEKITVSYRDIHWQEQTITLTGFPA 126 Query: 132 TCLQHELDHLNGILF 146 QHELDHL G + Sbjct: 127 QICQHELDHLEGRII 141 >gi|332652856|ref|ZP_08418601.1| peptide deformylase [Ruminococcaceae bacterium D16] gi|332518002|gb|EGJ47605.1| peptide deformylase [Ruminococcaceae bacterium D16] Length = 136 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + + + L + + P + I ++LE + + +G+AA IGV R++ Sbjct: 1 MIRDICK-DETFLAQKAEPATPDDLPI---AADLLETLEHHKAGCVGMAANMIGVNKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + MV NP+II S + +EGCLS+ R KR I VR+ + Sbjct: 57 AFD-----NEGTYMVMFNPEIIKQSGPYEA-EEGCLSLTGTR-PAKRWKSIKVRWQNEKF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q ++ G A +QHE+DH GI+ Sbjct: 110 QERLKTFTGWTAQIIQHEIDHCEGIII 136 >gi|222151046|ref|YP_002560200.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402] gi|222120169|dbj|BAH17504.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402] Length = 136 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 4/131 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K L+ + +L R + + + ++ + LI ++ + ++ +G+G+AA QIGV ++ ++ Sbjct: 1 MIKQLIEEQNSLLHREVKDVTQFDASLKALIKDLEDTLFHHNGVGIAAPQIGVDLKVALV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + +NPKI+++S++ EGCLSIP V RS I + D + Sbjct: 61 DM----EADGILQLVNPKIVSYSEETESDVEGCLSIPGVFGLVDRSIEIVIEANDLDGNK 116 Query: 122 QIIYADGLLAT 132 + A +A Sbjct: 117 IEMTAYDDIAR 127 >gi|270292421|ref|ZP_06198632.1| peptide deformylase [Streptococcus sp. M143] gi|306824859|ref|ZP_07458203.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|270278400|gb|EFA24246.1| peptide deformylase [Streptococcus sp. M143] gi|304433070|gb|EFM36042.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 136 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L +VS+P + + + L ++ + + + +GLAA IGV R+++ +L Sbjct: 12 LSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRVIIFNLG-----LV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 PMV NP ++++ + +EGCLS+ R R ITV Y D Q Q I G A Sbjct: 64 PMVMFNPILLSYKGPYET-EEGCLSLTGVR-TTTRYETITVSYRDSKWQEQTITLTGFPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL G + Sbjct: 122 QICQHELDHLEGRII 136 >gi|328468001|gb|EGF39025.1| peptide deformylase [Lactobacillus helveticus MTCC 5463] Length = 137 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 13/148 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 M K + I+ L + S N + +N ++ + + + +GLAA IG R+ Sbjct: 1 MAVKKI-IYDQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAVGLAANMIGQSKRI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + P + INPKI+ S + +EGCLS+ R V R ITV Y + + Sbjct: 57 IAFYIGSL-----PFMMINPKIVRKSGKYMT-EEGCLSLSGQRQTV-RYKEITVTYQNLD 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH +GIL Sbjct: 110 FKEVTQDFSEFIAETIQHEVDHCDGILI 137 >gi|197301435|ref|ZP_03166515.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC 29176] gi|197299473|gb|EDY33993.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC 29176] Length = 136 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59 + + ++ I R ++P + + +I + ++L+ + + +G+AA IG+ ++ Sbjct: 1 MVRNIIK-GKKIFGRKAKPATEADQEI---VTDLLDTLRANREICVGMAANMIGINKSII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + INP I S ++ +EGCLS+ R R I V Y+D N Sbjct: 57 AVAVGPFQ-----FAMINPVITKMSGEYKT-EEGCLSLEGTRLC-TRYEEIEVDYLDSNF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q G A +QHE+DH GI+ Sbjct: 110 QFCHGKYSGWTAQIIQHEIDHCKGIVI 136 >gi|307720000|ref|YP_003891140.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] gi|306978093|gb|ADN08128.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] Length = 269 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 7/163 (4%) Query: 2 VKKPLVIFPD-PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K ++ +P P L + N ++ +LI ++ + + + + L+A QIG Y ++V Sbjct: 1 MVKEIIKYPTTPSL-EFGANVRHFNQELFDLIKDLKDTIEANNLDALSAFQIGSPYAVIV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + INP+II + E P A KR I + Y D +A Sbjct: 60 IKKDD----GEFLELINPRIIKR-EGTITPVESTAYFPGLSAKTKRYEKIKLMYEDRDAN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q + A+G LA +Q +LD++ G F L +R ++ K+ Sbjct: 115 QQFLEAEGDLAVTIQRKLDYVFGSNFRVRLDDNERKLLDSKLE 157 >gi|223985568|ref|ZP_03635622.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM 12042] gi|223962475|gb|EEF66933.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM 12042] Length = 141 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + +V DPIL SRP + ++ + + ++ + + ++ G+AA IG R++ Sbjct: 5 MIREIVT--DPILL--SRPSREATAEDLAVAADLKDTLIAHADHCAGMAANMIGQSVRVI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + D P+V INP+II +EGCLS+P R +R + +RY D + Sbjct: 61 AVFVADQ-----PLVLINPQIIKAEGRKYTAEEGCLSLPGTR-RAQRFEKLQLRYQDEQS 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHELDH GIL Sbjct: 115 RIKQRTFSGFTAQVIQHELDHCEGILI 141 >gi|116630410|ref|YP_819563.1| peptide deformylase [Lactobacillus gasseri ATCC 33323] gi|238852749|ref|ZP_04643155.1| peptide deformylase [Lactobacillus gasseri 202-4] gi|282850746|ref|ZP_06260121.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311111595|ref|ZP_07712992.1| peptide deformylase [Lactobacillus gasseri MV-22] gi|116095992|gb|ABJ61144.1| N-formylmethionyl-tRNA deformylase [Lactobacillus gasseri ATCC 33323] gi|238834599|gb|EEQ26830.1| peptide deformylase [Lactobacillus gasseri 202-4] gi|282558154|gb|EFB63741.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311066749|gb|EFQ47089.1| peptide deformylase [Lactobacillus gasseri MV-22] Length = 137 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYR 57 M KP++ D + L+ S + K + + +++ + + + +G GLAA IGV R Sbjct: 1 MSVKPIIH--DELSLKFKSTLVTKQD---LAAAEDLKDTLIANNGKAAGLAANMIGVQKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + + P+V +NP I+ +D + Y EGCLS+ R +R ITV+Y + Sbjct: 56 IIALFVGPL-----PIVMLNPIIVKKADKYLAY-EGCLSLEGER-PTERYKKITVKYQNE 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + +A +QHE+DH NGIL Sbjct: 109 NFETRQQAFSDFVAEVIQHEVDHCNGILI 137 >gi|309798745|ref|ZP_07693009.1| polypeptide deformylase [Streptococcus infantis SK1302] gi|308117562|gb|EFO54974.1| polypeptide deformylase [Streptococcus infantis SK1302] Length = 136 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L +VS+P + + + + + LE T +GLAA IGV R+++ ++ PM Sbjct: 12 LSQVSQPASQEDLPLAKDLQDTLEANRET-CVGLAANMIGVQKRVIIFNIG-----MIPM 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP + +F + +EGCLS+ R R ITV Y D + + Q I G A Sbjct: 66 VMFNPVLKSFEGPYET-EEGCLSLTGVR-PTTRYEKITVSYRDIHWKEQTITLTGFPAQI 123 Query: 134 LQHELDHLNGILF 146 QHELDHL G + Sbjct: 124 CQHELDHLEGRII 136 >gi|238925751|ref|YP_002939268.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|238877427|gb|ACR77134.1| peptide deformylase [Eubacterium rectale ATCC 33656] Length = 136 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 16/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 MVKK I DP+ L + S + + ++ ++L+ + + +G+AA IGV Sbjct: 1 MVKK---IMRDPLFLAQKSEDATEDD---KQVVTDLLDTLKANLDHCVGMAANMIGVKKN 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V+ INP I S F +EGCLS+ R R I V Y+D Sbjct: 55 IIVVAAGPFQ-----FAMINPVITGKSGAFQT-EEGCLSLDGVR-PCTRYKEIEVDYLDQ 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + G A +QHE+DH NG++ Sbjct: 108 NFKKKHGKYTGWTAQIIQHEVDHCNGVVI 136 >gi|307721460|ref|YP_003892600.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] gi|306979553|gb|ADN09588.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] Length = 272 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 71/150 (47%), Gaps = 5/150 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P P+ + + + + LI+++ + + + L+A QIG Y +V++ Sbjct: 1 MVRTIIQYPTPLSVEYATDVRIFDETLFALIEDLKDTINENNLDALSAYQIGSYYNVVIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + INP++I+ S ++ PD A+++R I+V Y D N Sbjct: 61 ----KDDSGEFIEMINPRLISHSGTIITDEQTAY-YPDKSAEIQRYDKISVVYQDRNGND 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + A G + +Q ++D+ G F+ +S Sbjct: 116 KSMQASGEFSIRIQRKIDYTFGATFVQKMS 145 >gi|332024895|gb|EGI65083.1| Peptide deformylase, mitochondrial [Acromyrmex echinatior] Length = 240 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + IE +D +I +++ VM + G++ QIG+ +++ I+ Sbjct: 52 QVGDPVLRGHAMKIEPEVIRMADFQKVITHLINVMRAYKSYGISGPQIGLPWQIFAIECT 111 Query: 65 DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + +FINP++ EGC SI Y A V R+ + Sbjct: 112 EEIMEGVEETVKKTHEMNIIPMTIFINPELKVMDYTPITLYEGCESIRGYSAAVPRAYEV 171 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ ++ +A+ A G A QHE DHL G L+I+ + Sbjct: 172 EIKALNASAEQFTWRACGWSARIAQHEYDHLQGKLYIEKMD 212 >gi|237757000|ref|ZP_04585457.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] gi|237690843|gb|EEP59994.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] Length = 121 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRA 102 AA Q+ R +++D H+ N + V NPKI+ + +++EGC+S+PDY Sbjct: 1 AAPQVNNPIRAIIVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEI-IFREGCMSVPDYTG 59 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +VKR +I V D N +G A +QHE+DHL G +FI+ + K D+ +K+ Sbjct: 60 NVKRFYYIKVEAQDINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKV 118 Query: 163 SK 164 K Sbjct: 119 YK 120 >gi|323141001|ref|ZP_08075911.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] gi|322414538|gb|EFY05347.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] Length = 136 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 ++KP++ + L + S+P ++ + + ++L+ + ++ +GLAA IGV ++ Sbjct: 1 MEKPIIK-DEAFLAQKSQPATFMD---IAVAQDLLDTLAAHADRCVGLAANMIGVQKCVI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +++ + +NP+II S + +EGCLS+ RA V R ITV Y D Sbjct: 57 AVNIGPTN-----IAMLNPEIIKRSGKYMT-EEGCLSLEGERAAV-RYEKITVAYQDMQF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + G A +QHE+DH +GI+ Sbjct: 110 KKCKQSFSGFTAQIIQHEIDHCHGIII 136 >gi|316983220|pdb|3L87|A Chain A, The Crystal Structure Of Smu.143c From Streptococcus Mutans Ua159 Length = 238 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 25/183 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR V++ + +N D + L + ML E M G+GLAA Q Sbjct: 52 DIIREGHPTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 111 Query: 52 IGVLYRLVVIDLQDHAHRKN---------PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100 + + R++ + + + + V NP+II S D EG LS+ Sbjct: 112 LDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGXLSVDRV 171 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R + +T+ Y D N+ + + G + +QHE+DH NGI+F D ++ I Sbjct: 172 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINEKNPFEIK 231 Query: 160 KKM 162 + + Sbjct: 232 EGL 234 >gi|313895677|ref|ZP_07829233.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975803|gb|EFR41262.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] Length = 137 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRL 58 + +P+V D L + S K + +++ +++L+ + S G +GLAA IG R+ Sbjct: 1 MVRPIVK--DAMFLGQPSEEAVKSD---LSIANDLLDTLKSHVGHCVGLAANMIGEKKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + + K+ +V +N +I+ S + +EGCLS+P R R +I V Y D Sbjct: 56 IAVCIG-----KSHLVMLNAEIVKSSTEQYETEEGCLSLPGQR-KTMRHTWIEVTYRDIK 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH NGIL Sbjct: 110 FRKQKNKFSGFTAQIIQHEIDHCNGILI 137 >gi|23008036|ref|ZP_00049646.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 145 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 3/137 (2%) Query: 29 MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88 + ++L+ + + +GL A IG RLVVI LQ +++P ++ S + + Sbjct: 3 RAVSADVLDTLGAVSAMGLTAPHIGRPERLVVIRLQPDEPHA---TYVDPVVVWASAERA 59 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + EG +S+P V+R A + VRY D + + A+GL A CLQHE+D L+GI +ID Sbjct: 60 SHPEGSVSMPGVVEPVERPARVRVRYRDLDGETHEEEAEGLRAACLQHEIDQLDGIFWID 119 Query: 149 HLSRLKRDMITKKMSKL 165 L+RL+RD + K+ +KL Sbjct: 120 RLTRLRRDRVLKRFAKL 136 >gi|323465635|gb|ADX69322.1| Polypeptide deformylase [Lactobacillus helveticus H10] Length = 137 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 13/148 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 M K + I+ L + S N + +N ++ + + + GLAA IG R+ Sbjct: 1 MAVKKI-IYDQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAAGLAANMIGQSKRI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + P + INPKI+ S + +EGCLS+ R V R ITV Y + + Sbjct: 57 IAFYIGSL-----PFMMINPKIVRKSGKYMT-EEGCLSLSGQRQTV-RYKEITVTYQNLD 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + A +QHE+DH +GIL Sbjct: 110 FKEVTQDFSEFTAETIQHEVDHCDGILI 137 >gi|227511983|ref|ZP_03942032.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] gi|227084791|gb|EEI20103.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] Length = 136 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + KP+ +P+ L + ++P ++ +I ++L+ +++ +G+AA IGV R+ Sbjct: 1 MIKPINH--NPLTLSQRAQPATLADT---QIITDLLDTLHANTQICVGMAANMIGVNKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + P+ +NP+I+ S F+ +EGCLS+ R+ R ITV Y+D N Sbjct: 56 IVVQMG-----MLPVALVNPEIVEKSVPFAT-KEGCLSLEGQRS-TTRYKEITVTYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH GIL Sbjct: 109 LRSHRQGFSDWIAQIIQHEVDHCEGILI 136 >gi|225376046|ref|ZP_03753267.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM 16841] gi|225212066|gb|EEG94420.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM 16841] Length = 136 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + K + DP L + S + + +I ++L+ + + +G+AA IGV + Sbjct: 1 MIKKITR--DPMFLAQKSVDATEAD---KQVISDLLDTLRANLDHCVGMAANMIGVSKNI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ INP I F +EGCLS+ R R I V Y+D N Sbjct: 56 IVVAAGPFQ-----FAMINPVITKKMGTFQT-EEGCLSMDGVR-PCTRYKEIEVDYLDTN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH NGI+ Sbjct: 109 FKKQHGKYTGWTAQIIQHEIDHCNGIVI 136 >gi|291531177|emb|CBK96762.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum 70/3] Length = 136 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 12/136 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRK 70 +L + S P + + +++LE + + +G+AA IGVL ++ I+ Sbjct: 11 LLSQKSAPATEND---RQTGEDLLETLIANSERCVGMAANMIGVLKNIIAIN-----DNG 62 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + ++ NP+II + +EGCLS+ R KR I VRY+D N + +I +G Sbjct: 63 DYLLMYNPEIIKSDGAYET-EEGCLSLDGVR-KTKRYKKIKVRYLDRNFKIKIKTYEGFT 120 Query: 131 ATCLQHELDHLNGILF 146 A +QHE+DHL+GI+ Sbjct: 121 AQIIQHEVDHLSGIII 136 >gi|167751759|ref|ZP_02423886.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702] gi|167655567|gb|EDR99696.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702] gi|291557962|emb|CBL35079.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum V10Sc8a] Length = 136 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 12/136 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 +L + S P + + +++LE + + +G+AA IG+L ++ I+ Sbjct: 11 LLSQKSAPATEND---RQTGEDLLETLIANSEHCVGMAANMIGILKNIIAIN-----DNG 62 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 + ++ NP+II + +EGCLS+ R KR I VRY+D N + +I +G Sbjct: 63 DYLLMYNPEIIKSDGAYET-EEGCLSLDGLR-KTKRYKKIKVRYLDRNFKIKIKTYEGFT 120 Query: 131 ATCLQHELDHLNGILF 146 A +QHE DHL+GI+ Sbjct: 121 AQIIQHETDHLSGIII 136 >gi|256847494|ref|ZP_05552940.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] gi|256716158|gb|EEU31133.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] Length = 136 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + KP+ I IL +VS P + + + + ++L+ + + +GLAA IG+ R++ Sbjct: 1 MIKPI-IHDQNILTKVSTPAQLSD---VKIAQDLLDTLQAHQESCVGLAANMIGIHKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I + + +NP+II + +EGCLS+ RA R ITV++MD Sbjct: 57 AITIGPAR-----VAMLNPEIINHQQPYQT-EEGCLSLNGQRA-TTRYQTITVQFMDIQG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q I +G A QHE+DH NGIL Sbjct: 110 HRQQITLNGFPAQIAQHEIDHCNGILI 136 >gi|313905668|ref|ZP_07839029.1| formylmethionine deformylase [Eubacterium cellulosolvens 6] gi|313469492|gb|EFR64833.1| formylmethionine deformylase [Eubacterium cellulosolvens 6] Length = 136 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + K +V DP+ LR+ S P K + +I ++++ + + +G+AA IGV ++ Sbjct: 1 MVKQIVR--DPLFLRQKSEPATKED---KQVITDLMDTLRANQERCVGMAANMIGVRKQI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + + +NP I S + +EGCLS+ R+ R I V Y+D + Sbjct: 56 IVVAVGPFI-----VPMVNPVITRKSGKYET-EEGCLSLDGVRSC-TRYKEIEVEYLDQD 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + + A +QHE+ H +G L Sbjct: 109 FKKKHGKFNDFTAQIIQHEIQHFSGELI 136 >gi|167767071|ref|ZP_02439124.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1] gi|167711046|gb|EDS21625.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1] gi|291559591|emb|CBL38391.1| N-formylmethionyl-tRNA deformylase [butyrate-producing bacterium SSC/2] Length = 136 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + K + DP+ L + S K + ++ ++L+ + + +G+AA IGV + Sbjct: 1 MIKDI--MKDPLFLAQKSTDATKAD---QQVVVDLLDTLRANLDHCVGMAANMIGVKKNI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + INPKI S F +EGCLS+ R KR I V Y+D + Sbjct: 56 IVVAVGPFQ-----FAMINPKITKKSGVFET-EEGCLSLDGVR-PCKRYKEIEVDYLDQD 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH GI+ Sbjct: 109 FKEQHGKYSGWTAQIIQHEIDHCKGIVI 136 >gi|300362713|ref|ZP_07058888.1| peptide deformylase [Lactobacillus gasseri JV-V03] gi|300353141|gb|EFJ69014.1| peptide deformylase [Lactobacillus gasseri JV-V03] Length = 137 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYR 57 M KP++ D + L+ S K + + ++ + + + +G GLAA IGV R Sbjct: 1 MSVKPIIH--DELSLKFKSTLATKQD---LTTAKDLKDTLLANNGKAAGLAANMIGVQKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + + P+V +NP I+ +D + Y EGCLS+ R +R ITV+Y + Sbjct: 56 IIALFVGPL-----PIVMLNPIIVKKTDKYLAY-EGCLSLEGER-PTERYKKITVKYQNE 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + +A +QHE+DH NGIL Sbjct: 109 NFETRQQDFSDFVAEVIQHEVDHCNGILI 137 >gi|291551092|emb|CBL27354.1| N-formylmethionyl-tRNA deformylase [Ruminococcus torques L2-14] Length = 136 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 19/150 (12%) Query: 2 VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLY 56 + KP+ + F L + S + + + ++L+ + + +G+AA IGV Sbjct: 1 MIKPIMRDIFF----LNQKSELATEAD---KQVAIDLLDTLKANEAGCVGMAANMIGVKK 53 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 R++ +++ + NPKI+ + + +EGCLS+ R+ +R I V Y D Sbjct: 54 RIIAVNMGSFN-----IAMFNPKIVKRTGAYET-EEGCLSLDGVRSC-RRYQEIEVEYQD 106 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + G A +QHE+DH +GIL Sbjct: 107 MNFKKKREKYSGWTAQIIQHEIDHCDGILI 136 >gi|47459452|ref|YP_016314.1| formylmethionine deformylase [Mycoplasma mobile 163K] gi|47458782|gb|AAT28103.1| formylmethionine deformylase [Mycoplasma mobile 163K] Length = 184 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST--------DGIGLAAVQIGVLY 56 L+ P+ ILR+ S I ++ + + L M+ + ++ G+G+AAVQ G+L Sbjct: 8 LIELPNKILRQKSLDINLPLSHEDIELAKKMIYHIKNSQSKNTIFRPGVGVAAVQYGILK 67 Query: 57 RLVVIDLQDHAHRKN-PMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAF 109 ++ + + D ++ + INPK++ S + EGCLS+ P+ VKRS Sbjct: 68 QMFYVYITDEDNKVVFEDLMINPKVLAKSTSKIALRTGEGCLSVNEEHPNQEGYVKRSKR 127 Query: 110 ITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I V+ Y + +G A QHELDHLNG LFIDH+ + I K + Sbjct: 128 IVVKGYSYFKKEEVTHDLNGYPAIVFQHELDHLNGKLFIDHIDKENNWFIEKDLE 182 >gi|15829160|ref|NP_326520.1| polypeptide deformylase 2 (PDF 2) (formylmethionine deformylase 2) [Mycoplasma pulmonis UAB CTIP] gi|23396551|sp|Q98PN3|DEF_MYCPU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|14090104|emb|CAC13862.1| POLYPEPTIDE DEFORMYLASE 2 (PDF 2) (FORMYLMETHIONINE DEFORMYLASE 2) [Mycoplasma pulmonis] Length = 198 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 31/185 (16%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51 M K +V P +LR+ S+ + +N + L + M+ + + G+G+AAVQ Sbjct: 4 MFKVEIVQLPKKVLRQKSKNVNIPLNKTNIELAEKMIYHIDDSQGPNTKFRPGVGVAAVQ 63 Query: 52 IGVLYRLVVIDLQ--------DHAHRKNPM-------VFINPKIITFSDDFSVY--QEGC 94 G+L + + + D + P V NP++I SD+ EGC Sbjct: 64 YGILKNVFYVCVPNDSRLTQRDSSQEVKPEDKYLFRDVIFNPEVIWKSDEMVAISQGEGC 123 Query: 95 LSI----PDYRADVKRSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDH 149 LS+ P+ V+R I V+ + ++I+ G +A QHELDHLNG+LFID Sbjct: 124 LSVDESWPNQEGLVRRHMEIKVKGYSYFQKKEMIWHVKGYVAIVFQHELDHLNGMLFIDR 183 Query: 150 LSRLK 154 + + Sbjct: 184 IDPKR 188 >gi|166030770|ref|ZP_02233599.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC 27755] gi|166029352|gb|EDR48109.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC 27755] Length = 136 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYR 57 + + +V +L + S P + + + ++L+ + + +G+AA IGV R Sbjct: 1 MVREVV---HDVLFLGQKSEPATQAD---KQVAIDLLDTLKAHEEGCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ +++ + NP+I+ S + +EGCLS+ R R I + Y D Sbjct: 55 IIAVNMGFMN-----VAMFNPRIVKKSGSYQT-EEGCLSLIGVR-PCTRYQEIELEYQDM 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q G +A +QHE+DH NGI+ Sbjct: 108 NWKKQRQKYTGWIAQIIQHEVDHCNGIII 136 >gi|294155360|ref|YP_003559744.1| peptide deformylase [Mycoplasma crocodyli MP145] gi|291600027|gb|ADE19523.1| peptide deformylase [Mycoplasma crocodyli MP145] Length = 183 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQ 51 M + LV P +LR S+ + + + + L + M+ + + G+G+AAVQ Sbjct: 1 MYEVKLVKLPKKVLREKSKDVPIPLLPEDVELAEKMIYHIDDSQKEGSKFRAGVGVAAVQ 60 Query: 52 IGVLYRLVVIDLQDHAHRKN--PMVFINPKIITFSDDFSV--YQEGCLSI----PDYRAD 103 G+L + + ++D V NPKII+ S+ + EGCLS+ P Sbjct: 61 YGILKNVFYVHVRDFDKDIEIFRDVLFNPKIISKSETLTALSDGEGCLSVSESWPGQSGL 120 Query: 104 VKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 V RSA I V + G +A QHELDHL G LFID + + Sbjct: 121 VHRSARIVVEAYSYMQKKVVEFDVFGYVAIVFQHELDHLEGKLFIDRIDK 170 >gi|126650157|ref|ZP_01722390.1| peptide deformylase [Bacillus sp. B14905] gi|126593329|gb|EAZ87291.1| peptide deformylase [Bacillus sp. B14905] Length = 192 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 83/156 (53%), Gaps = 17/156 (10%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRLV 59 +LR+ ++ + + + +++ +ML+ + ++ G GL+A QIGV R+ Sbjct: 22 LLRKQTQDVAIPVPLEDRHILLSMLQYLKNSQDPILIKKYKLRSGSGLSANQIGVDKRMF 81 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPD-YRADVKRSAFITVRYMD 116 + ++H + + M+FINPK+++ S + EG CLS+ V R I V+ + Sbjct: 82 AVLFENHDQK-HEMMFINPKVMSHSFNMIYLPEGEGCLSVNRPVHGFVPRYERIKVKAYN 140 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + Q I+ G + +QHE+DHLNGI+F D +++ Sbjct: 141 IDGQEFIMSLKGYESIVVQHEIDHLNGIMFYDRINK 176 >gi|299116829|emb|CBN74941.1| chloroplast peptide deformylase (Partial) [Ectocarpus siliculosus] Length = 209 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 2/114 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64 ++ +P P LR + IE + D+ L +M ++MY+ G+GLAA Q+GV RL+V + + Sbjct: 95 ILKYPHPALRAENDEIEVFDDDVKKLARDMFKIMYAAKGVGLAAPQVGVNKRLMVFNPEG 154 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D + + + +NPKI+ +EGCLS P K + T+RY + Sbjct: 155 DAKNWLDEAILVNPKIVASGKGRITAEEGCLSFPGMEGK-KDWSTPTMRYSNIQ 207 >gi|161506686|ref|YP_001576636.1| peptide deformylase [Lactobacillus helveticus DPC 4571] gi|260101789|ref|ZP_05752026.1| peptide deformylase [Lactobacillus helveticus DSM 20075] gi|160347675|gb|ABX26349.1| Polypeptide deformylase [Lactobacillus helveticus DPC 4571] gi|260084400|gb|EEW68520.1| peptide deformylase [Lactobacillus helveticus DSM 20075] Length = 137 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 13/148 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 M K + I+ L + S N + +N ++ + + + GLAA IG R+ Sbjct: 1 MAVKKI-IYDQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAAGLAANMIGQSKRI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + P + INPKI+ S + +EGCLS+ R V R ITV Y + + Sbjct: 57 IAFYIGSL-----PFMMINPKIVRKSGKYMT-EEGCLSLSGQRQTV-RYKEITVTYQNLD 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH +GIL Sbjct: 110 FKEVTQDFSEFIAETIQHEVDHCDGILI 137 >gi|148992559|ref|ZP_01822227.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|149003222|ref|ZP_01828118.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|149011789|ref|ZP_01832985.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|168488787|ref|ZP_02712986.1| polypeptide deformylase [Streptococcus pneumoniae SP195] gi|237650234|ref|ZP_04524486.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974] gi|237820884|ref|ZP_04596729.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2] gi|147758682|gb|EDK65679.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|147764220|gb|EDK71152.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|147928576|gb|EDK79590.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|183572696|gb|EDT93224.1| polypeptide deformylase [Streptococcus pneumoniae SP195] gi|332072344|gb|EGI82827.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA17570] Length = 136 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS+P + + + L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANHDTCVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++F + +EGCLS+ R+ KR I V Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRVAYRDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|293365837|ref|ZP_06612542.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|307703294|ref|ZP_07640239.1| polypeptide deformylase family protein [Streptococcus oralis ATCC 35037] gi|322375601|ref|ZP_08050113.1| peptide deformylase [Streptococcus sp. C300] gi|291315661|gb|EFE56109.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|307623160|gb|EFO02152.1| polypeptide deformylase family protein [Streptococcus oralis ATCC 35037] gi|321279309|gb|EFX56350.1| peptide deformylase [Streptococcus sp. C300] Length = 136 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L +VS+P + + + L ++ + + + +GLAA IGV R+++ +L Sbjct: 12 LSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRVIIFNLG-----LV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 PMV NP ++++ + +EGCLS+ R+ R ITV Y D Q Q I G A Sbjct: 64 PMVMFNPVLLSYIGPYET-EEGCLSLTGVRS-TTRYETITVSYRDSKWQEQTITLTGFPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL G + Sbjct: 122 QICQHELDHLEGRII 136 >gi|261367618|ref|ZP_05980501.1| peptide deformylase [Subdoligranulum variabile DSM 15176] gi|282570406|gb|EFB75941.1| peptide deformylase [Subdoligranulum variabile DSM 15176] Length = 136 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 19/150 (12%) Query: 2 VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDG-IGLAAVQIGVLY 56 + + + VIF L + + P + + ++LE + Y DG +G+AA IGV Sbjct: 1 MIREICKDVIF----LAQKAEPATPEDLPV---AADLLETLEYHKDGCVGMAANMIGVNK 53 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 R++ D + V NP+I+ S + +EGCLS+ R VKR I V++ + Sbjct: 54 RIIAFDNEGKYQ-----VMFNPEILRRSGPYEA-EEGCLSLTGVR-PVKRWKTIKVQWQN 106 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146 Q +I G A +QHE+DH GI+ Sbjct: 107 EKFQQRIKNFTGWTAEIIQHEIDHCEGIII 136 >gi|312868505|ref|ZP_07728705.1| peptide deformylase [Streptococcus parasanguinis F0405] gi|311096250|gb|EFQ54494.1| peptide deformylase [Streptococcus parasanguinis F0405] Length = 185 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S + L ++ + + + + +GLAA IGV R ++I + Sbjct: 61 LGQKSEEATPED---RTLALDLQDTLNAHLLECVGLAANMIGVKKRAIIIRMGSEN---- 113 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP ++ + +EGCLS+ R R I+V Y D N + + I+ G A Sbjct: 114 -LVLFNPVLLEKKKPYQT-EEGCLSLVGSR-PTTRYEEISVAYRDVNWKAKTIHLSGFPA 170 Query: 132 TCLQHELDHLNGILF 146 QHE+DHL GI+ Sbjct: 171 QICQHEMDHLEGIII 185 >gi|291524049|emb|CBK89636.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale DSM 17629] gi|291527891|emb|CBK93477.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale M104/1] Length = 136 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 16/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 MVKK I DP+ L + S + + ++ ++L+ + + +G+AA IGV Sbjct: 1 MVKK---IMRDPLFLAQKSVDATEDD---KQVVTDLLDTLRANLDHCVGMAANMIGVKKN 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V+ INP I S F +EGCLS+ R R I V Y+D Sbjct: 55 IIVVAAGPFQ-----FAMINPVITGKSGAFQT-EEGCLSLDGVR-PCTRYKEIEVDYLDQ 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + G A +QHE+DH NG++ Sbjct: 108 NFKKKHGKYTGWTAQIIQHEVDHCNGVVI 136 >gi|319946366|ref|ZP_08020604.1| peptide deformylase [Streptococcus australis ATCC 700641] gi|319747519|gb|EFV99774.1| peptide deformylase [Streptococcus australis ATCC 700641] Length = 148 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57 M++K + DP L ++S K + + L ++ + + + +G+AA IGV R Sbjct: 12 MMEKAI--MKDPFFLSQISEEATKED---LYLAQDLQDTLRAHQDSCVGMAANMIGVRKR 66 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++I P+V NP ++ + +EGCLS+ R R I V Y D Sbjct: 67 VIIIQFG-----LMPLVLFNPVLVKKEGVYET-EEGCLSLAGSR-KTSRFEKIQVSYRDM 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q+I +G A QHELDHL GIL Sbjct: 120 NWKPQLISLEGFAAQICQHELDHLEGILI 148 >gi|262283351|ref|ZP_06061117.1| peptide deformylase [Streptococcus sp. 2_1_36FAA] gi|262260842|gb|EEY79542.1| peptide deformylase [Streptococcus sp. 2_1_36FAA] Length = 136 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVV 60 K ++ L++ S K + + L ++ + + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LQQKSEVAVKSD---LYLAQDLQDTLLANQENCVGLAANMIGVKKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + P++ NP + S + +EGCLS+ R+ R ITV Y+D N Q Sbjct: 58 F-----MYGMVPIIMFNPVLRAKSGPYQT-EEGCLSLVGSRS-TTRYQEITVDYLDRNWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I A QHELDHL GIL Sbjct: 111 PQTITLKDFPAQICQHELDHLEGILI 136 >gi|154500866|ref|ZP_02038904.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC 29799] gi|150270366|gb|EDM97692.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC 29799] Length = 136 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59 + + + + L + + P + + + ++LE + +G+AA IGV R++ Sbjct: 1 MIRDICK-DETFLAQKAEPATPDD---IQIAADLLETLEHHKDGCVGMAANMIGVNKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + MV NP+I+ S + +EGCLS+ R KR I VR+ + + Sbjct: 57 AFD-----NEGTYMVMFNPEIVKKSGPYDA-EEGCLSLTGIR-PAKRWQSIKVRWQNEHF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q ++ G A +QHELDH GI+ Sbjct: 110 QERLKAFTGWTAQIIQHELDHCEGIII 136 >gi|28379384|ref|NP_786276.1| peptide deformylase [Lactobacillus plantarum WCFS1] gi|254557520|ref|YP_003063937.1| peptide deformylase [Lactobacillus plantarum JDM1] gi|308181597|ref|YP_003925725.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272223|emb|CAD65131.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1] gi|254046447|gb|ACT63240.1| peptide deformylase [Lactobacillus plantarum JDM1] gi|308047088|gb|ADN99631.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 136 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59 + +P+V P + S P + ++ ++L+ + + + +G+AA IGV +++ Sbjct: 1 MIRPIVHDPAAL----SVPADLATPADTQVLTDLLDTLAAHTDNCVGMAANMIGVNKQII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+ L A + INPKII + +EGCLS+P R R ITV+Y D + Sbjct: 57 VVQLGPFA-----IAMINPKIIDHHGTYET-KEGCLSLPGER-PTSRYHQITVKYKDQHF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q + A +QHELDH G L Sbjct: 110 KPQQQRFNDFTAQIIQHELDHCAGKLI 136 >gi|307705978|ref|ZP_07642803.1| polypeptide deformylase family protein [Streptococcus mitis SK564] gi|307620488|gb|EFN99599.1| polypeptide deformylase family protein [Streptococcus mitis SK564] Length = 136 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS+P + + + L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANREICVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++F + +EGCLS+ R KR I V Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLSFEGPYET-EEGCLSLVGVR-PTKRYETIKVAYRDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|293375957|ref|ZP_06622217.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325841958|ref|ZP_08167535.1| peptide deformylase [Turicibacter sp. HGF1] gi|292645394|gb|EFF63444.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325489791|gb|EGC92146.1| peptide deformylase [Turicibacter sp. HGF1] Length = 136 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59 + +P++ + L + S P K + + +++++++ + + +G+AA IG+ R++ Sbjct: 1 MIRPIMK-DEKFLAQKSVPATKAD---LAVVEDLIDTLRANLERCVGMAANMIGIKKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + + + INP I+ + +E CLS+ +R + R I V Y+D Sbjct: 57 VFAIGEII-----VPMINPVIVKKEKSYVT-EESCLSLVGFR-ETTRYETIEVEYLDKQF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q G +A +QHE+DH NGI+ Sbjct: 110 NKQKGTFTGFVAQIIQHEIDHCNGIII 136 >gi|168483572|ref|ZP_02708524.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00] gi|172043063|gb|EDT51109.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00] Length = 136 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS+P + + + L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++F + +EGCLS+ R+ KR I V Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRVAYRDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|307708362|ref|ZP_07644829.1| peptide deformylase [Streptococcus mitis NCTC 12261] gi|307615808|gb|EFN95014.1| peptide deformylase [Streptococcus mitis NCTC 12261] Length = 136 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS+P + + + L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANRETCVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++ S+ +EGCLS+ R KR I V Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLS-SEGVYETEEGCLSLTGVR-PTKRYEIIRVAYCDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|227893768|ref|ZP_04011573.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] gi|227864413|gb|EEJ71834.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] Length = 137 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 13/148 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 M + + I L + S N + + +++ + + + GLAA IG R+ Sbjct: 1 MTAQNI-IHDQLFLSQKS---TIANKGDLKIAEDLRDTLLANRNKAAGLAANMIGKSKRI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + P + INP+II S ++ +EGCLS+ R + KR ITV Y + N Sbjct: 57 IAFYVGPF-----PFLMINPQIIKKSGEYLA-KEGCLSLDGER-EAKRYEKITVSYQNLN 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + G +A +QHE+DH NGIL Sbjct: 110 FEKETQSFSGFVAETIQHEVDHCNGILI 137 >gi|289168375|ref|YP_003446644.1| predicted polypeptide deformylase [Streptococcus mitis B6] gi|288907942|emb|CBJ22782.1| predicted polypeptide deformylase [Streptococcus mitis B6] Length = 136 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L +VS+P + + + L ++ + + + +GLAA IGV R+++ +L Sbjct: 12 LSQVSQPASQED---LYLARDLQDTLLANRETCVGLAANMIGVQKRVIIFNLG-----LV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P+V NP +++F + +EGCLS+ R KR I V Y D Q Q I G A Sbjct: 64 PVVMFNPVLLSFDGLYET-EEGCLSLTGVR-PTKRYETIRVAYRDSKWQEQTITLTGFPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL G + Sbjct: 122 QICQHELDHLEGRII 136 >gi|317499718|ref|ZP_07957976.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893024|gb|EFV15248.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 136 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + K + DP+ L + S K + ++ ++L+ + + +G+AA IGV ++ Sbjct: 1 MIKDI--MKDPLFLAQKSTDATKAD---QQVVVDLLDTLRANLDHCVGMAANMIGVKKKI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + INPKI S F +EGCLS+ R KR I V Y+D + Sbjct: 56 IVVAVGPFQ-----FAMINPKITKKSGVFET-EEGCLSLDGVR-PCKRYKEIEVDYLDQD 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH GI+ Sbjct: 109 FKKQHGKYSGWTAQIIQHEIDHCKGIVI 136 >gi|324993584|gb|EGC25504.1| peptide deformylase [Streptococcus sanguinis SK405] gi|324995104|gb|EGC27016.1| peptide deformylase [Streptococcus sanguinis SK678] Length = 136 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + + IGLAA IGV R ++ + P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRAIIF-----LYGLVPVVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + +EGCLS+ R +R ITV Y+D N Q Q + GL A QH Sbjct: 69 NPVLRSKSGPYQT-EEGCLSLTGSR-PTQRYQEITVDYLDKNWQQQTMTLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GIL Sbjct: 127 ELDHLEGILI 136 >gi|116334552|ref|YP_796079.1| peptide deformylase [Lactobacillus brevis ATCC 367] gi|116099899|gb|ABJ65048.1| N-formylmethionyl-tRNA deformylase [Lactobacillus brevis ATCC 367] Length = 136 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 12/142 (8%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQ 64 V+ + L + S+P + I ++++ + + + +G+AA IGV R++V+D+ Sbjct: 5 VVHDEARLVQRSQPATPADG---QTITDLIDTLRANQENCVGMAANMIGVNRRIIVVDMG 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+ INP+I + + QEGCLS+ R R I V +++ N Q Q Sbjct: 62 IL-----PVAMINPEITKMAGPYDT-QEGCLSLSGER-PTHRFKTIDVTFLNQNFQKQRQ 114 Query: 125 YADGLLATCLQHELDHLNGILF 146 G +A +QHE++H NGIL Sbjct: 115 TFTGFVAQIIQHEVEHCNGILI 136 >gi|239625206|ref|ZP_04668237.1| Def1 [Clostridiales bacterium 1_7_47_FAA] gi|239519436|gb|EEQ59302.1| Def1 [Clostridiales bacterium 1_7_47FAA] Length = 160 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 13/167 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIG--LAAVQIGVL 55 ++K +++ P L V + + +++ + + L G+G +AA QIGV Sbjct: 1 MEKTILLLGHPDLYEVCSEVTEEELPWMAEVKEDLKDTLLAFRKRYGVGRAIAAPQIGVK 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R++ + H P++FINP++ + + C+S PD V+R + Y Sbjct: 61 KRVI------YRHLDTPVLFINPRLEFPDKEEMEVMDDCMSFPDLLVRVRRYKRCIIHYR 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + + +G +A +QHE DHL+GIL R + K+ Sbjct: 115 DEQWKECSLAFEGDMAELIQHEYDHLDGILATMRAID-DRAFVMKEY 160 >gi|322386870|ref|ZP_08060494.1| peptide deformylase [Streptococcus cristatus ATCC 51100] gi|321269152|gb|EFX52088.1| peptide deformylase [Streptococcus cristatus ATCC 51100] Length = 136 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58 ++K +V DP L++ S P K++ + L ++ + + + +GLAA IG R+ Sbjct: 1 MQKSIVK--DPFFLQQKSVPATKVD---LFLAQDLQDTLLAHRESCVGLAANMIGSQKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ + PMV NP +I S + +EGCLS+ R + R ITV Y+D N Sbjct: 56 IIF-----MYVMLPMVMFNPVLIQKSGPYET-EEGCLSLAGSRPTI-RYQKITVEYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + I + A QHELDHL GIL Sbjct: 109 WLKKTITLEDFPAQICQHELDHLEGILI 136 >gi|255523790|ref|ZP_05390755.1| formylmethionine deformylase [Clostridium carboxidivorans P7] gi|255512493|gb|EET88768.1| formylmethionine deformylase [Clostridium carboxidivorans P7] Length = 165 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYS-----TDGIGLAAVQIGVL 55 + K +++ + L + S ++K I + ++ + + G +AA QIGV Sbjct: 1 MLKEILLLGNDALYKKSLLVQKEELDSIKGTVLDLHDTLIDFRKKYNAGRAIAAPQIGVF 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + + P+VFINP + + + + C+S P+ V R TV Y Sbjct: 61 KRLIYMYID------KPIVFINPILKFDNKEIMEVMDDCMSFPNLLVKVNRYKECTVMYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 D + + I +G L+ +QHE DHL+GIL K + K+ Sbjct: 115 DIDFIDRTIKFEGNLSELIQHEYDHLDGILATMRAIDNKSFYLKKQ 160 >gi|324990225|gb|EGC22163.1| peptide deformylase [Streptococcus sanguinis SK353] Length = 136 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + +EGCLS+ R +R ITV Y+D N Q + + GL A QH Sbjct: 69 NPVLRSKSGPYQT-EEGCLSLTGSR-PTQRYQEITVDYLDKNWQQRTMTLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GIL Sbjct: 127 ELDHLEGILI 136 >gi|306829860|ref|ZP_07463047.1| peptide deformylase [Streptococcus mitis ATCC 6249] gi|304427871|gb|EFM30964.1| peptide deformylase [Streptococcus mitis ATCC 6249] Length = 136 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L +VS+P + + + L ++ + + + +GLAA IG R+++ +L Sbjct: 12 LSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGEQKRVIIFNLG-----LV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 PMV NP ++++ + +EGCLS+ R R I V Y D Q Q I G A Sbjct: 64 PMVMFNPILLSYKGPYET-EEGCLSLTGVR-PTTRYETIKVSYRDSKWQEQTITLTGFPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL G + Sbjct: 122 QICQHELDHLEGRII 136 >gi|332523659|ref|ZP_08399911.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176] gi|332314923|gb|EGJ27908.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176] Length = 136 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + +V DP L++VS+ K + I + + L + +GLAA IG R+++ Sbjct: 1 MIRRIVK--DPFFLQQVSKQATKEDLPIGKDLQDTLAFHRE-NCLGLAANMIGESKRIII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + +V NPK++ SD + +E CLS+ + KR ITV Y+D N + Sbjct: 58 ISMGFVD-----LVMFNPKLVKKSDSYIT-EESCLSLSGNQ-KTKRYQKITVEYLDLNWR 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + +GL A QHELDHL+GIL Sbjct: 111 KKSLSLNGLAAQICQHELDHLDGILI 136 >gi|194323397|ref|ZP_03057174.1| polypeptide deformylase [Francisella tularensis subsp. novicida FTE] gi|194322252|gb|EDX19733.1| polypeptide deformylase [Francisella tularensis subsp. novicida FTE] Length = 186 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 12/143 (8%) Query: 16 RVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM- 73 + +P+ I +++I N+I M E M +GIGLAA QIG Y++ +I+ D ++ + P Sbjct: 3 QKCKPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNARYPFS 60 Query: 74 -------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQHQIIY 125 VFINPKI S + GCLS R + I + + + Sbjct: 61 FDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEKITGK 120 Query: 126 ADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 121 LDSIAAVIFQHEFNHLLGSVYVD 143 >gi|153855447|ref|ZP_01996578.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814] gi|149752101|gb|EDM62032.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814] Length = 136 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 19/150 (12%) Query: 2 VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLY 56 + +P+ + F L + S P + + + ++L+ + + +G+AA IGV Sbjct: 1 MIRPIMKDIFF----LNQRSEPATEAD---KQVAVDLLDTLKAHEEGCVGMAANMIGVKK 53 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++ +++ + NPKI+ S + +EGCLS+ R R I V Y D Sbjct: 54 CIIAVNMGFMN-----VAMFNPKIVKRSGKYET-EEGCLSLTGVR-KCTRYQEIEVEYQD 106 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q G A +QHE+DH +GI+ Sbjct: 107 MNFKKQRQKYTGWTAQIIQHEVDHCHGIVI 136 >gi|25011446|ref|NP_735841.1| peptide deformylase [Streptococcus agalactiae NEM316] gi|77411175|ref|ZP_00787527.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|24412984|emb|CAD47063.1| unknown [Streptococcus agalactiae NEM316] gi|77162793|gb|EAO73752.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|319745273|gb|EFV97591.1| peptide deformylase [Streptococcus agalactiae ATCC 13813] Length = 136 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + KP+V D L++ S+ + + ++L ++ + +++ +G+AA IG L R+ Sbjct: 1 MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSLKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++I++ +V NP ++ SD + +E CLS+ R+ +R IT+ Y D N Sbjct: 56 IIINVGITN-----LVMFNPVLVAKSDPYET-EESCLSLVGCRS-TQRYRHITISYRDIN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q I A QHELDHL GIL Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136 >gi|301775659|ref|XP_002923264.1| PREDICTED: peptide deformylase, mitochondrial-like [Ailuropoda melanoleuca] gi|281349917|gb|EFB25501.1| hypothetical protein PANDA_012363 [Ailuropoda melanoleuca] Length = 141 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 14/127 (11%) Query: 39 MYSTDGIGLAAVQIGVLYRLVVIDLQD--------------HAHRKNPMVFINPKIITFS 84 M +GL+A Q+GV +++ ++ + VF+NP + Sbjct: 1 MRRRRCVGLSAPQLGVPLQVLALEFPEALFRACAPGLREARQMEPFPLRVFVNPSLRVLD 60 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + EGC S+ + A V R + + +D + + A G A +QHE+DHL G Sbjct: 61 SRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEQVVWQASGWAARIIQHEMDHLQGC 120 Query: 145 LFIDHLS 151 LFID + Sbjct: 121 LFIDKMD 127 >gi|302870584|ref|YP_003839221.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315506821|ref|YP_004085708.1| transcriptional regulator, xre family [Micromonospora sp. L5] gi|302573443|gb|ADL49645.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315413440|gb|ADU11557.1| transcriptional regulator, XRE family [Micromonospora sp. L5] Length = 510 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 11/156 (7%) Query: 6 LVIFPDPILRRVSRPIEKINSD--IMNLIDNML-------EVMYSTDGIGLAAVQIGVLY 56 +V D +LR+ +R + + +ID + E+ + G+GLAA Q+G+ + Sbjct: 338 IVQRGDDLLRQRARQFDLPADEQHARQVIDRLAAMLVRLDELHPFSKGVGLAAPQLGIGW 397 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++ D A +P+V +NP+++ + + EGCLS D+R V R I V + Sbjct: 398 SAALVRPADRA--ADPVVLLNPRVVDAATETDEQYEGCLSFFDHRGLVPRPLRIDVEHAL 455 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I + +A + HE+DHL G L++D ++ Sbjct: 456 WDGSRVITSYEYAMARLVAHEIDHLEGRLYVDRMAP 491 >gi|307181864|gb|EFN69304.1| Peptide deformylase, mitochondrial [Camponotus floridanus] Length = 238 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62 DP+LR + IE D +I +++ +M S D G++ QIG+ +++ I+ Sbjct: 51 QIGDPVLRGHAMKIEPEVIKLEDFQKVITHLINIMRSYDACGMSGPQIGLPWQIFAIEHT 110 Query: 63 -----LQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D +FINP++ + EGC S+ Y A V R+ I Sbjct: 111 MEHMKTSDEVIKKAYEMEVIPVTIFINPELKIIDHTPIILYEGCESVRGYSAAVPRAYEI 170 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ++ +A+ G A QHE DHL G L+ID + Sbjct: 171 EITALNASAEQFTWRGRGWSARIAQHEYDHLQGELYIDKMD 211 >gi|22537481|ref|NP_688332.1| peptide deformylase [Streptococcus agalactiae 2603V/R] gi|22534360|gb|AAN00205.1|AE014253_3 polypeptide deformylase, putative [Streptococcus agalactiae 2603V/R] Length = 136 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + KP+V D L++ S+ + + ++L ++ E +++ +G+AA IG L R+ Sbjct: 1 MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQETLHANQNYCVGMAANMIGSLKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++I++ +V NP ++ SD + +E CLS+ R+ +R IT+ Y D N Sbjct: 56 IIINVGITN-----LVMFNPVVVAKSDPYET-EESCLSLVGCRS-TQRYCHITISYRDIN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q I A QHELDHL GIL Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136 >gi|226322583|ref|ZP_03798101.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758] gi|225209077|gb|EEG91431.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758] Length = 136 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 19/150 (12%) Query: 2 VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLY 56 + KP+ + F LR+ + K + + ++L+ + + + +G+AA IGV Sbjct: 1 MVKPIMRDLFF----LRQKAEKATKGDFPV---AIDLLDTLKAHEDGCVGMAANMIGVNK 53 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++ +++ + NPKI+ + + +EGCLS+ R V R I V Y D Sbjct: 54 AIIAVNMGFMN-----VAMFNPKIVKRNGKYET-EEGCLSLDGVRKCV-RYQEIKVEYED 106 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q G A +QHE DHLNGI+ Sbjct: 107 INFKRQRQKYSGWTAQIIQHECDHLNGIII 136 >gi|313901227|ref|ZP_07834715.1| peptide deformylase [Clostridium sp. HGF2] gi|312954185|gb|EFR35865.1| peptide deformylase [Clostridium sp. HGF2] Length = 184 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 18/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V D I+R S P+ + ++ L+ +ML + S+ +G+AA+Q Sbjct: 7 DIVKDTDAIVRTKSEPVTLPLGAEDEALLQDMLTYVRSSQDAEIAEKENLRPAVGIAAIQ 66 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVKRSA 108 +GV R++ + + + +NP+I++ S + EGCLS+ + + V R+A Sbjct: 67 LGVPKRMLAVVVPNEEGIDE-YALVNPRIVSESVQRAYLKNGEGCLSVENEHEGIVPRAA 125 Query: 109 FITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITVR D Q I A LA LQHE+DH +G LF D +++ Sbjct: 126 RITVRGYDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170 >gi|315037295|ref|YP_004030863.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] gi|325955774|ref|YP_004286384.1| peptide deformylase [Lactobacillus acidophilus 30SC] gi|312275428|gb|ADQ58068.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] gi|325332339|gb|ADZ06247.1| peptide deformylase [Lactobacillus acidophilus 30SC] gi|327182600|gb|AEA31047.1| peptide deformylase [Lactobacillus amylovorus GRL 1118] Length = 137 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 13/148 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 M + + I L + S N + + +++ + + + +GLAA IG R+ Sbjct: 1 MTAQNI-IHDQLFLSQKS---TSANRADLKVAEDLRDTLLANRDKAVGLAANMIGKNKRI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + P+V +NP+I S ++ +EGCLS+ R KR ITV Y D N Sbjct: 57 IAFYVGLL-----PLVMLNPQITKKSGEYLT-EEGCLSLSGER-KTKRYRTITVTYQDMN 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH GIL Sbjct: 110 LNTKTQEFTDFIAEVIQHEVDHCEGILI 137 >gi|300768769|ref|ZP_07078665.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493726|gb|EFK28898.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 141 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59 + +P+V P + S P + ++ ++L+ + + + +G+AA IGV +++ Sbjct: 6 MIRPIVHDPAAL----SVPADLATPADTQVLTDLLDTLAAHTDNCVGMAANMIGVNKQII 61 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+ L A + INPKII + +EGCLS+P R R ITV+Y D + Sbjct: 62 VVQLGPFA-----IAMINPKIIDHHGTYET-KEGCLSLPGER-PTSRYHQITVKYKDQHF 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q + A +QHELDH G L Sbjct: 115 KPQQQRFNDFTAQIIQHELDHCAGKLI 141 >gi|257790516|ref|YP_003181122.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] gi|257474413|gb|ACV54733.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] Length = 136 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ + +L+R S P + + I + + LE + +G+AA IG L R++V Sbjct: 1 MIRPIMR--NELVLQRASAPATEADLPIAQDLLDTLEAHRHS-CVGMAANMIGELKRIIV 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + +NP+II+ + + +EGCLS+ R+ R I V Y D + Sbjct: 58 FDDGGSH-----VAMLNPEIISCAGTYEA-EEGCLSLSGTRSA-TRYRTIKVSYQDLAMK 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 ++ G A +QHE+DH NG+L Sbjct: 111 PRVKTFTGFTAQIIQHEIDHCNGVLI 136 >gi|15901392|ref|NP_345996.1| peptide deformylase [Streptococcus pneumoniae TIGR4] gi|15903451|ref|NP_359001.1| peptide deformylase [Streptococcus pneumoniae R6] gi|111658457|ref|ZP_01409130.1| hypothetical protein SpneT_02000357 [Streptococcus pneumoniae TIGR4] gi|116515494|ref|YP_816841.1| peptide deformylase [Streptococcus pneumoniae D39] gi|148984899|ref|ZP_01818152.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|148997383|ref|ZP_01824988.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|168491557|ref|ZP_02715700.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|168575253|ref|ZP_02721216.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016] gi|169834412|ref|YP_001694956.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|194396850|ref|YP_002038183.1| peptide deformylase [Streptococcus pneumoniae G54] gi|221232262|ref|YP_002511415.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225854993|ref|YP_002736505.1| peptide deformylase [Streptococcus pneumoniae JJA] gi|225857177|ref|YP_002738688.1| peptide deformylase [Streptococcus pneumoniae P1031] gi|225861384|ref|YP_002742893.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298230075|ref|ZP_06963756.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255200|ref|ZP_06978786.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503289|ref|YP_003725229.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|307068194|ref|YP_003877160.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|14973038|gb|AAK75636.1| polypeptide deformylase [Streptococcus pneumoniae TIGR4] gi|15459060|gb|AAL00212.1| Formylmethionine deformylase [Streptococcus pneumoniae R6] gi|15858844|gb|AAK13237.1| peptide deformylase-like protein [Streptococcus pneumoniae] gi|116076070|gb|ABJ53790.1| polypeptide deformylase [Streptococcus pneumoniae D39] gi|147756438|gb|EDK63479.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|147922921|gb|EDK74037.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|168996914|gb|ACA37526.1| polypeptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|183574125|gb|EDT94653.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|183578738|gb|EDT99266.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016] gi|194356517|gb|ACF54965.1| peptide deformylase [Streptococcus pneumoniae G54] gi|220674723|emb|CAR69296.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225723305|gb|ACO19158.1| polypeptide deformylase [Streptococcus pneumoniae JJA] gi|225725217|gb|ACO21069.1| polypeptide deformylase [Streptococcus pneumoniae P1031] gi|225728377|gb|ACO24228.1| polypeptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298238884|gb|ADI70015.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|301800382|emb|CBW33013.1| peptide deformylase [Streptococcus pneumoniae OXC141] gi|306409731|gb|ADM85158.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|327389740|gb|EGE88085.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA04375] gi|332199596|gb|EGJ13671.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA41317] gi|332200116|gb|EGJ14189.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA47368] gi|332200992|gb|EGJ15063.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA47901] Length = 136 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS+P + + + L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++F + +EGCLS+ R+ KR I + Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRLAYRDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|76787753|ref|YP_329975.1| peptide deformylase [Streptococcus agalactiae A909] gi|76799363|ref|ZP_00781521.1| polypeptide deformylase [Streptococcus agalactiae 18RS21] gi|77414517|ref|ZP_00790664.1| polypeptide deformylase [Streptococcus agalactiae 515] gi|76562810|gb|ABA45394.1| polypeptide deformylase [Streptococcus agalactiae A909] gi|76585283|gb|EAO61883.1| polypeptide deformylase [Streptococcus agalactiae 18RS21] gi|77159440|gb|EAO70604.1| polypeptide deformylase [Streptococcus agalactiae 515] Length = 136 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + KP+V D L++ S+ + + ++L ++ + +++ +G+AA IG L R+ Sbjct: 1 MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSLKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++I++ +V NP ++ SD + +E CLS+ R+ +R IT+ Y D N Sbjct: 56 IIINVGITN-----LVMFNPVLVAKSDPYET-EESCLSLVGCRS-TQRYHHITISYRDIN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q I A QHELDHL GIL Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136 >gi|307329049|ref|ZP_07608216.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306885244|gb|EFN16263.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 500 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 15/158 (9%) Query: 4 KPL--VIFPDPILRRVSRPIEKINS--DIMNLIDNML------EVMY-STDGIGLAAVQI 52 + + V DPIL + +RP + D ++ ++ ++ G+G+AA QI Sbjct: 323 RDIGMVQEGDPILTKTARPFALPDEAEDARRVVAELISAAERAATVHVFGKGMGVAAPQI 382 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 G+ ++ + + +NP+I+ S + EGCLS D R V R I+V Sbjct: 383 GIDRAAAIVRTPE----GETLTLLNPRIVEESPEADEQYEGCLSFFDVRGKVPRPLAISV 438 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + D + Q +I + +A + HE+DHL+G+L+ + Sbjct: 439 EHQDIDGQQRITIFERGMARLVAHEVDHLHGLLYRARM 476 >gi|259503598|ref|ZP_05746500.1| peptide deformylase [Lactobacillus antri DSM 16041] gi|259168422|gb|EEW52917.1| peptide deformylase [Lactobacillus antri DSM 16041] Length = 136 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 12/136 (8%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 +L +VS+ + + I ++ + + + +G+AA IGV R+++ L Sbjct: 11 LLSQVSQLASRADLPIAQ---DLKDTLAANGDHCVGMAANMIGVPKRVIIASLGPF---- 63 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 P+V NP II S + QEGCLS+ R+ R ITVR+ + Q + D Sbjct: 64 -PVVMFNPVIIAKSGPYQT-QEGCLSLAGQRS-TTRFQKITVRFTNEQWTQQELSLDAFP 120 Query: 131 ATCLQHELDHLNGILF 146 A +QHE+DH NGIL Sbjct: 121 AEIVQHEIDHCNGILI 136 >gi|315613522|ref|ZP_07888429.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] gi|315314213|gb|EFU62258.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] Length = 136 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L +VS+P + + + L ++ + + + +GLAA IGV R+++ +L Sbjct: 12 LSQVSKPASQED---IYLARDLQDTLLANRETCVGLAANMIGVQKRVIIFNLG-----LV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 PMV NP +++ + +EGCLS+ R R ITV Y D Q I G A Sbjct: 64 PMVMFNPILLSNKGPYET-EEGCLSLTGVR-PTTRYETITVSYRDSKWQELTITLTGFPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL G + Sbjct: 122 QICQHELDHLEGRII 136 >gi|253579091|ref|ZP_04856362.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA] gi|251850034|gb|EES77993.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA] Length = 136 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 + + + S+P K + + + ++ + + + +G+AA IGV +++ Sbjct: 6 VRDIFFLG-----QPSKPATKAD---IQIGKDLQDTLQANREWCVGMAANMIGVRKNIII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP I++ D + +EGCLS+ R R I V Y D N + Sbjct: 58 VNMGFID-----VVMFNPVIVSKHDMYET-EEGCLSLDGVR-KTTRYQEIEVEYYDFNWK 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q G A QHE+DHL+G + Sbjct: 111 KQRQKLSGWTAQICQHEIDHLSGKII 136 >gi|307704401|ref|ZP_07641314.1| polypeptide deformylase family protein [Streptococcus mitis SK597] gi|307622045|gb|EFO01069.1| polypeptide deformylase family protein [Streptococcus mitis SK597] Length = 136 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS+ + + ++L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSQSASQED---LHLARDLQDTLLANRETCVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++F + +EGCLS+ R KR I V Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLSFEGPYET-EEGCLSLVGVR-PTKRYETIRVAYRDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|144574929|gb|AAZ43441.2| putative polypeptide deformylase [Mycoplasma synoviae 53] Length = 189 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 19/165 (11%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVLY 56 +V PD ILR S+ +E ++ + + L + M+ + + G+G+AA+Q G+ Sbjct: 12 IVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQK 71 Query: 57 RLVVIDLQDHAH-RKNPMVFINPKIITFSDDFSV---YQEGCLSIPD----YRADVKRSA 108 + + L + + V NP I+TF + EGCLS+PD V RS Sbjct: 72 NVFYVKLTQNDNSVVFDDVLFNP-IVTFKGKILTALAHGEGCLSVPDEIPNQEGLVSRSY 130 Query: 109 FITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V+ Y +H + G LA QHELDHLNG LFID +++ Sbjct: 131 EIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 175 >gi|71894044|ref|YP_278152.1| putative polypeptide deformylase [Mycoplasma synoviae 53] Length = 186 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 19/165 (11%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVLY 56 +V PD ILR S+ +E ++ + + L + M+ + + G+G+AA+Q G+ Sbjct: 9 IVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQK 68 Query: 57 RLVVIDLQDHAH-RKNPMVFINPKIITFSDDFSV---YQEGCLSIPD----YRADVKRSA 108 + + L + + V NP I+TF + EGCLS+PD V RS Sbjct: 69 NVFYVKLTQNDNSVVFDDVLFNP-IVTFKGKILTALAHGEGCLSVPDEIPNQEGLVSRSY 127 Query: 109 FITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V+ Y +H + G LA QHELDHLNG LFID +++ Sbjct: 128 EIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 172 >gi|327473594|gb|EGF19014.1| peptide deformylase [Streptococcus sanguinis SK408] Length = 136 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANQENCIGLAANMIGVRKRVIIF-----LYGLVPIVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + +EGCLS+ R +R ITV Y+D N Q Q + GL A QH Sbjct: 69 NPVLRSKSGPYQT-EEGCLSLVGSR-PTQRYQEITVDYLDKNWQQQTMTLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GI+ Sbjct: 127 ELDHLEGIII 136 >gi|319937459|ref|ZP_08011864.1| peptide deformylase [Coprobacillus sp. 29_1] gi|319807299|gb|EFW03908.1| peptide deformylase [Coprobacillus sp. 29_1] Length = 189 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 22/172 (12%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVM------------YSTDGIGLAAV 50 K ++ P++R +S+P+E I + L+ +M E + + +G+AAV Sbjct: 5 KDIIDDHHPLIREISQPVEMPICQEDEQLLLDMHEFLVNSQDEEMSEKYHLRPAVGIAAV 64 Query: 51 QIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI-PDYRA 102 Q+GVL R+ I D + + + +NPKI+++++ + EGCLS+ D Sbjct: 65 QVGVLKRMCAIHVLSYDDDGNISKADDYALVNPKIVSYTEKGSYLKDGEGCLSVNDDVEG 124 Query: 103 DVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R A +TV+ D ++ I A G L+ CLQHELDH +G LF D +++ Sbjct: 125 LVPRHAKVTVKGYDVLTHKNVTIVARGYLSICLQHELDHFDGKLFYDRINKE 176 >gi|110798606|ref|YP_695205.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|168217422|ref|ZP_02643047.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] gi|110673253|gb|ABG82240.1| polypeptide deformylase [Clostridium perfringens ATCC 13124] gi|182380515|gb|EDT77994.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] Length = 136 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + +P+V +L + S K + + +ID++++ + + +G+AA IGV R Sbjct: 1 MIRPIVK---DVLFLGQKSELATKED---IGIIDDLVDTLRANLESCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + + +NP I+ + +E CLS+ +R R I V Y+D Sbjct: 55 ILVFSIGNII-----VPMVNPVILKKEKSYET-EESCLSLTGFR-KTTRYEIIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH +GI+ Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136 >gi|268320251|ref|YP_003293907.1| polypeptide deformylase [Lactobacillus johnsonii FI9785] gi|262398626|emb|CAX67640.1| polypeptide deformylase [Lactobacillus johnsonii FI9785] Length = 137 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57 M KP+V D + L+ S P K + + ++ + + + GLAA IGV R Sbjct: 1 MAVKPIVH--DELSLKFKSLPATKQD---LGAATDLKDTLLANKDRAAGLAANMIGVQKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + + P+V +NP I+ +D + Y EGCLS+ R +R ITV+Y + Sbjct: 56 IIALFVGPL-----PIVMLNPIIVAQNDKYLAY-EGCLSLTGER-PTERYKNITVKYQNE 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + A +QHE+DH NGIL Sbjct: 109 NLETRQQSFSDFTAEVIQHEIDHCNGILI 137 >gi|331266006|ref|YP_004325636.1| polypeptide deformylase, putative [Streptococcus oralis Uo5] gi|326682678|emb|CBZ00295.1| polypeptide deformylase, putative [Streptococcus oralis Uo5] Length = 136 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L +VS+P + + + L ++ + + + +GLAA IGV R+++ +L Sbjct: 12 LSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRVIIFNLG-----LV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P+V NP ++++ + +EGCLS+ R R ITV Y D Q Q I G Sbjct: 64 PIVMFNPILLSYEGPYET-EEGCLSLTGVR-PTTRFETITVSYRDSKWQEQTITLTGFPV 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL G + Sbjct: 122 QICQHELDHLEGRII 136 >gi|77406283|ref|ZP_00783349.1| polypeptide deformylase [Streptococcus agalactiae H36B] gi|77175095|gb|EAO77898.1| polypeptide deformylase [Streptococcus agalactiae H36B] Length = 136 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59 + KP+V L++ S+ + + ++L ++ + +++ +G+AA IG R++ Sbjct: 1 MIKPIVR-DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSXKRVI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +I++ +V NP ++ SD + +E CLS+ R+ +R IT+ Y D N Sbjct: 57 IINVGITN-----LVMXNPVLVAKSDPYET-EESCLSLVGCRS-TQRYHHITISYRDINW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q I A QHELDHL GIL Sbjct: 110 KEQQIKLTDFPAQICQHELDHLEGILI 136 >gi|153811559|ref|ZP_01964227.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174] gi|149832300|gb|EDM87385.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174] Length = 136 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P K + + + ++ + + + +G+AA IGV ++++++ Sbjct: 12 LGQPSEPATKAD---IQVGKDLQDTLRANRERCVGMAANMIGVKKNIIIVNMGFID---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP I++ D + +EGCLS+ R R I V Y D N + Q G A Sbjct: 65 -VVMFNPVIVSKHDMYET-EEGCLSLDGVR-KTTRYQEIEVEYYDFNWKKQRQKLSGWTA 121 Query: 132 TCLQHELDHLNGILF 146 QHE+DHL+G + Sbjct: 122 QICQHEIDHLSGKII 136 >gi|268608180|ref|ZP_06141907.1| peptide deformylase [Ruminococcus flavefaciens FD-1] Length = 137 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + + +V DP +L R S P K + M+ + ++L+ + + +G+AA IGV + Sbjct: 1 MVREIVR--DPLVLGRKSEPAGKED---MHTVRDLLDTLAANSDRCVGMAANMIGVHKTI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V + A + INPKI S D +EGCLS+ R V+R FITV Y+D Sbjct: 56 LVAAVGGKA-----VAMINPKITDKSKDTYDTEEGCLSLDGVR-PVQRYKFITVEYLDHR 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH +G + Sbjct: 110 FKKKKQTFRDFEAQIIQHEIDHFSGRII 137 >gi|2507258|sp|P47352|DEF_MYCGE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase Length = 216 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 21/173 (12%) Query: 1 MVKKP---LVIFPDPIL-RRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DG 44 M +P ++F D L + + + I+ I I M+ + ++ G Sbjct: 24 MTFQPTKTWLVFDDNALINKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPG 83 Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYR- 101 IG+AA QIG +L I L D +++ + INPKII S++ + + EGCLS+ Sbjct: 84 IGIAANQIGYWKQLFYIHLNDL-NKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHK 142 Query: 102 ADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V RS +IT++ D + I A GL CLQHE DHL G F ++ L Sbjct: 143 GYVIRSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 195 >gi|289178283|gb|ADC85529.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12] Length = 188 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 7/147 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 +++ +V L R S P + + + ++ E + + + +G+AA IG R++ Sbjct: 47 MQRTIVT-DTSFLSRPSDPADPADPLDAAIAQDLKETLAAHREECVGMAANMIGEPKRVI 105 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + V NP+I ++ EGCLS+ R R I V Y Sbjct: 106 AFVDEGLGSAI--TVMFNPQITAADGEYDAC-EGCLSLHGER-HTPRFRRIEVDYTTRKG 161 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH NG+L Sbjct: 162 RARHATFTDWTAQIIQHEIDHCNGVLI 188 >gi|145596629|ref|YP_001160926.1| formylmethionine deformylase [Salinispora tropica CNB-440] gi|145305966|gb|ABP56548.1| formylmethionine deformylase [Salinispora tropica CNB-440] Length = 506 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 11/161 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNML-------EVMYSTDGIGLAAVQ 51 M ++ +LR+ +RP + + +D + E+ + G+G+AA Q Sbjct: 329 MRSLGILQHDADLLRQPTRPFDLPREEEVAQQAVDRLTAALVRLDELHPFSKGVGVAAPQ 388 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +G+ V+ D P+V +NP+++ + D EGCLS D R V R I Sbjct: 389 LGIGRAAAVVRPPDRGGE--PVVLLNPRVVDAAPDSDEQYEGCLSFFDQRGLVPRPLRID 446 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V + + I + +A + HE+DHL G L++D ++ Sbjct: 447 VEHTHLDGSRVITSYEYAMARLVAHEIDHLEGRLYVDRMAP 487 >gi|260221950|emb|CBA31026.1| hypothetical protein Csp_C26490 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 397 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 2/82 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L V++P+ +++ I L +MLE MY GIGLAA QI V R++V Sbjct: 29 MALLPILCYPDTRLHTVAKPVSQVDDRIRTLTADMLETMYDAKGIGLAATQIDVHERVIV 88 Query: 61 IDLQDHAHRKNPMVFINPKIIT 82 ID+ + R PMV INP+++ Sbjct: 89 IDVSE--DRDQPMVLINPELVW 108 >gi|149007536|ref|ZP_01831171.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|149007898|ref|ZP_01831485.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|147760625|gb|EDK67599.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|147760895|gb|EDK67865.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|332074306|gb|EGI84783.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA17545] Length = 136 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS+P + + + L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANHDTCVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++F + +EGCLS+ R+ KR + Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETTRLAYRDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|1361510|pir||G64211 formylmethionine deformylase homolog - Mycoplasma genitalium Length = 226 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 21/173 (12%) Query: 1 MVKKP---LVIFPDPIL-RRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DG 44 M +P ++F D L + + + I+ I I M+ + ++ G Sbjct: 34 MTFQPTKTWLVFDDNALINKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPG 93 Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYR- 101 IG+AA QIG +L I L D +++ + INPKII S++ + + EGCLS+ Sbjct: 94 IGIAANQIGYWKQLFYIHLNDL-NKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHK 152 Query: 102 ADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V RS +IT++ D + I A GL CLQHE DHL G F ++ L Sbjct: 153 GYVIRSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 205 >gi|108885085|ref|NP_072768.2| peptide deformylase [Mycoplasma genitalium G37] gi|255660128|ref|ZP_05405537.1| peptide deformylase [Mycoplasma genitalium G37] gi|84626150|gb|AAC71324.2| peptide deformylase [Mycoplasma genitalium G37] gi|166078861|gb|ABY79479.1| peptide deformylase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 193 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 21/173 (12%) Query: 1 MVKKP---LVIFPDPIL-RRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DG 44 M +P ++F D L + + + I+ I I M+ + ++ G Sbjct: 1 MTFQPTKTWLVFDDNALINKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPG 60 Query: 45 IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYR- 101 IG+AA QIG +L I L D +++ + INPKII S++ + + EGCLS+ Sbjct: 61 IGIAANQIGYWKQLFYIHLNDL-NKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHK 119 Query: 102 ADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V RS +IT++ D + I A GL CLQHE DHL G F ++ L Sbjct: 120 GYVIRSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 172 >gi|300811934|ref|ZP_07092395.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313122848|ref|YP_004033107.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300497131|gb|EFK32192.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312279411|gb|ADQ60130.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 143 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 19/154 (12%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQI 52 M + ++ DP+ +S+P K ++ ++L+ + + GLAA I Sbjct: 1 MTVQKIIH--DPL--NLSQPAAKAAANDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMI 56 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 GV ++ ++ P+V +NPKI+ S + +EGCLS+P R R ITV Sbjct: 57 GVNKAIIAVNAGFL-----PIVMLNPKIVKRSGHYLA-EEGCLSLPGER-PADRYEEITV 109 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 +Y D + + G +A +QHE+DH G L Sbjct: 110 KYQDMDLKEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|331083476|ref|ZP_08332588.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|330404169|gb|EGG83717.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 136 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 19/150 (12%) Query: 2 VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLY 56 + KP+ + F L + S P K + + ++++ + + +G+AA IGV Sbjct: 1 MVKPIMKDIFF----LGQKSEPATKADLQVGK---DLMDTLAANREGCVGMAANMIGVKK 53 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++++++ +V NP ++ + +EGCLS+ R R I V Y+D Sbjct: 54 SVIIVNMGFVD-----VVMFNPVLVRKESPYET-EEGCLSLTGVR-KTTRYQMIEVEYLD 106 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q + DG A QHELDHL GIL Sbjct: 107 MNWKKQKLKLDGWTAQICQHELDHLEGILI 136 >gi|295106021|emb|CBL03564.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae 7-10-1-b] Length = 136 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 9/114 (7%) Query: 35 MLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQE 92 +L+ + ++ + +G+AA IG R++V D P V NP+I+ S + +E Sbjct: 30 LLDTLAAHAHECVGMAANMIGTAKRIIVFD-----DEGTPRVMFNPEIVGRSGTYEA-EE 83 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 GCLS+P R R I VR+ D Q + G A +QHE+DH +GIL Sbjct: 84 GCLSLPGSR-RTTRYRTIKVRFEDRGFQPREQTFTGFTAQIIQHEIDHCDGILI 136 >gi|168204531|ref|ZP_02630536.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|170663898|gb|EDT16581.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] Length = 136 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + +P+V IL + S K + + +ID++++ + + +G+AA IGV R Sbjct: 1 MIRPIVK---DILFLGQKSELATKED---IGIIDDLVDTLRANLESCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + + +NP I+ + +E CLS+ +R R I V Y+D Sbjct: 55 ILVFSIGNII-----VPMVNPVILKKEKSYET-EESCLSLTGFR-KTTRYEIIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH +GI+ Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136 >gi|150018336|ref|YP_001310590.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] gi|6014951|sp|O08450|DEF_CLOB8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2208948|emb|CAB09662.1| formylmethionine deformylase [Clostridium beijerinckii] gi|149904801|gb|ABR35634.1| formylmethionine deformylase [Clostridium beijerinckii NCIMB 8052] Length = 136 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + KP+V IL + S K + M +ID++++ + + +GLAA IGV R Sbjct: 1 MIKPIVK---DILFLGQKSEEATKND---MVVIDDLIDTLRANLEHCVGLAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + + INP I+ + +E CLS+ +R KR I V Y+D Sbjct: 55 ILVFTVGNLI-----VPMINPVILKKEKPYET-EESCLSLIGFR-KTKRYETIEVTYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + +G A +QHE+DH GI+ Sbjct: 108 NFNKKKQVFNGFTAQIIQHEMDHFEGIII 136 >gi|148544448|ref|YP_001271818.1| peptide deformylase [Lactobacillus reuteri DSM 20016] gi|184153812|ref|YP_001842153.1| peptide deformylase [Lactobacillus reuteri JCM 1112] gi|227363124|ref|ZP_03847259.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|325682770|ref|ZP_08162286.1| peptide deformylase [Lactobacillus reuteri MM4-1A] gi|148531482|gb|ABQ83481.1| formylmethionine deformylase [Lactobacillus reuteri DSM 20016] gi|183225156|dbj|BAG25673.1| polypeptide deformylase [Lactobacillus reuteri JCM 1112] gi|227071842|gb|EEI10130.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|324977120|gb|EGC14071.1| peptide deformylase [Lactobacillus reuteri MM4-1A] Length = 136 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + KP++ +L + + P K + L ++ + + + + +G+AA IGV + Sbjct: 1 MIKPIIK-DQQLLAKKATPTTKADLP---LATDLSDTLNAHQAECVGMAANMIGVNKNAI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + +V NP+I+ S + EGCLS+ R KR ITV++ + + Sbjct: 57 IARIGPFN-----VVMFNPQIVAKSHPYQTT-EGCLSLSGTR-PTKRYKQITVKFRNQSW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q Q + A +QHE+DH NGI+ Sbjct: 110 QVQTLELADFAAEIIQHEIDHCNGIII 136 >gi|194466630|ref|ZP_03072617.1| formylmethionine deformylase [Lactobacillus reuteri 100-23] gi|194453666|gb|EDX42563.1| formylmethionine deformylase [Lactobacillus reuteri 100-23] Length = 136 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + KP++ +L + + P K + L +++++ + + + +G+AA IGV + Sbjct: 1 MIKPIIK-DHQLLGKKAIPTTKADLP---LANDLIDTLNVHQAECVGMAANMIGVNKNAI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + +V NP+II S + EGCLS+ R KR ITV + + + Sbjct: 57 IARIGPFN-----VVMFNPQIIAKSHPYQTA-EGCLSLSGTR-PTKRYKQITVNFRNQSW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q Q + A +QHE+DH NGI+ Sbjct: 110 QMQTLELTDFAAEIVQHEIDHCNGIII 136 >gi|309776085|ref|ZP_07671076.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] gi|308916036|gb|EFP61785.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] Length = 137 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 16/149 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNL--IDNMLEVM--YSTDGIGLAAVQIGVLYR 57 + + +V DP L ++ + +L + ++L+ + ++ +G+AA IGVL R Sbjct: 1 MIRDIVK--DPFLLS----CRSEDATLRDLQTMQDLLDTLQAHADHCVGMAANMIGVLKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ N ++ +NP II + +EGCL D + V R I V ++D Sbjct: 55 IIIFQ-----DGGNYVIMLNPVIIKTGNKRYTTEEGCLC-HDTKKKVTRYEKIKVFFIDA 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + +I +G A +QHELDH +GIL Sbjct: 109 NGRKKIKTYEGFCAQIIQHELDHCDGILI 137 >gi|331083358|ref|ZP_08332471.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|330404439|gb|EGG83984.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 136 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S K + + + ++++ + + +G+AA IGV R++++++ Sbjct: 12 LGQKSELATKAD---LQIGRDLMDTLAANREGCVGMAANMIGVKKRVIIVNMGFVD---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP ++ + +EGCLS+P R R I V Y+D N + Q + DG +A Sbjct: 65 -VVMFNPVLVKKELPYET-EEGCLSLPGVR-KTTRYQTIEVEYLDMNWKKQNLKLDGWIA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GIL Sbjct: 122 QICQHELDHLEGILI 136 >gi|148988601|ref|ZP_01820034.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|148990374|ref|ZP_01821546.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|149021827|ref|ZP_01835834.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|168493454|ref|ZP_02717597.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06] gi|147924329|gb|EDK75421.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|147925802|gb|EDK76877.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|147930063|gb|EDK81050.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|183576408|gb|EDT96936.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06] Length = 136 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS+P + + + L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++F + +EGCLS+ R+ KR + Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETTRLAYRDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|18309742|ref|NP_561676.1| peptide deformylase [Clostridium perfringens str. 13] gi|168214353|ref|ZP_02639978.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|169344411|ref|ZP_02865380.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|18144420|dbj|BAB80466.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|169297331|gb|EDS79440.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|170714200|gb|EDT26382.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] Length = 136 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + +P+V +L + S K + + +ID++++ + + +G+AA IGV R Sbjct: 1 MIRPIVK---DVLFLGQKSELATKED---IGIIDDLVDTLRANLESCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + + +NP I+ + +E CLS+ +R R I V Y+D Sbjct: 55 ILVFSIGNII-----VPMVNPVILKKEKSYET-EESCLSLTGFR-KTTRYEIIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH GI+ Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFEGIII 136 >gi|224541764|ref|ZP_03682303.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM 15897] gi|224525368|gb|EEF94473.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM 15897] Length = 186 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 22/165 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYR 57 +P++R S+ + ++ + + + M + + + G+G+AA+QIG+ R Sbjct: 9 NPLIREKSKEVTLPLSDEDRHTLMEMYQYLVDSQDEEKAEKYDLRPGVGIAAIQIGIPKR 68 Query: 58 LVVIDLQDHAHRKNPM-----VFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSAF 109 + I + N + +NP+I+ + + EGCLS+P D V RSA Sbjct: 69 MCAIYIPAVDEEGNIVKCDQWALVNPRIVASTVKVAYLKNGEGCLSVPEDQPGIVPRSAK 128 Query: 110 ITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +TV+ D Q I A G A CLQHELDH GIL+ DH ++ Sbjct: 129 VTVKGYDALTDQEVTIVARGFTAICLQHELDHFEGILYYDHFNKE 173 >gi|182684506|ref|YP_001836253.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|307127760|ref|YP_003879791.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B] gi|182629840|gb|ACB90788.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|306484822|gb|ADM91691.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B] Length = 136 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS P + + + L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSHPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++F + +EGCLS+ R+ KR I + Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRLAYRDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|330470685|ref|YP_004408428.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813656|gb|AEB47828.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 504 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 11/156 (7%) Query: 6 LVIFPDPILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 ++ +LR+ +RP + ++ + + + + E+ G+G+AA Q+ + Sbjct: 332 ILQRGADLLRQPARPFDLPREARAAREVIDRLTDALARLDELHPFAKGVGIAAPQLEIGR 391 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 VI D P+V +NP+++ + D EGCLS D+R V R + V + Sbjct: 392 AAAVIRPPD--RTAEPLVLLNPRVVDAAPDTDEQYEGCLSFFDHRGLVPRPLRLDVEHAQ 449 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + I + +A + HE+DHL G L++D ++ Sbjct: 450 LDGRRVITSFEFGMARLVAHEIDHLEGRLYVDRMAP 485 >gi|160913556|ref|ZP_02076247.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991] gi|158434108|gb|EDP12397.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991] Length = 185 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 17/165 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K ++ D ++R+ S +E +N++ L+ +ML+ + + +G+AA+ Sbjct: 6 KDIIQDSDTVIRKKSVNVELPLNAEDKQLLMDMLQYVRDSQDNELAEQNGLRPAVGIAAI 65 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI-PDYRADVKRS 107 Q+G+ +++ + + D N +I++ S + EGCLS+ +++ V R Sbjct: 66 QLGIPKKMLAVVVPDEEGNSQEFALANARIVSESVQLSYLKNGEGCLSVEKEHQGLVPRH 125 Query: 108 AFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A ITV+ D + I A LA LQHE+DH +G LF D ++ Sbjct: 126 ARITVKAYDLLQNKEITIKASDYLAIVLQHEIDHFSGTLFYDRIN 170 >gi|327488979|gb|EGF20775.1| peptide deformylase [Streptococcus sanguinis SK1058] Length = 136 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + +E CLS+ R +R IT+ Y+D + Q Q I GL A QH Sbjct: 69 NPVLRSKSGPYQT-EESCLSLVGSR-PTQRYQEITIDYLDKHWQQQTITLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GI+ Sbjct: 127 ELDHLEGIII 136 >gi|325124924|gb|ADY84254.1| Polypeptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 143 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 21/155 (13%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51 M + ++ DP+ L + + + ++L+ + + GLAA Sbjct: 1 MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IGV ++ ++ P+V +NPKI+ S + +EGCLS+P R R IT Sbjct: 56 IGVNKAIIAVNAGFL-----PIVMLNPKIVKRSGHYLA-EEGCLSLPGER-PADRYEEIT 108 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 V+Y D + + G +A +QHE+DH G L Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|323341211|ref|ZP_08081458.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] gi|323091405|gb|EFZ34030.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] Length = 136 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 15/148 (10%) Query: 2 VKKPLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58 + KP+ IL + S K + + ++++ + + +G+AA IG+ R+ Sbjct: 1 MIKPINKDVG--ILSKKSTTASKKD---LQTASDLIDTLKAHQNSCVGMAANMIGINKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + P++ INP+I ++ +EGCLS+ R KR I V Y+D N Sbjct: 56 IACFFGPF-----PVLMINPEITRKFGPYTA-EEGCLSLEGKRVA-KRFKHIEVTYLDEN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q D A +QHE+DH NGIL Sbjct: 109 FAKQRQKLDDFNAQIVQHEIDHCNGILI 136 >gi|157150232|ref|YP_001451024.1| peptide deformylase [Streptococcus gordonii str. Challis substr. CH1] gi|157075026|gb|ABV09709.1| formylmethionine deformylase [Streptococcus gordonii str. Challis substr. CH1] Length = 136 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L++ S K + + L ++ + + + + +GLAA IG R+++ + Sbjct: 12 LQQKSEVAVKSD---LYLAQDLQDTLLANQENCVGLAANMIGDKKRVIIF-----MYGMV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P++ NP + S + +EGCLS+ R+ R ITV Y+D N Q Q I A Sbjct: 64 PIIMFNPILRAKSGPYQT-EEGCLSLVGSRS-TTRYQEITVDYLDRNWQPQTITLKDFPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GIL Sbjct: 122 QICQHELDHLEGILI 136 >gi|330798798|ref|XP_003287437.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum] gi|325082584|gb|EGC36062.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum] Length = 238 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 51/199 (25%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNL---IDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ + +L++ + K SD+ L ID M + M + G G+AA QIG+ +L + Sbjct: 10 ILKVGNTVLKQKALAWTAKEMSDVKYLESVIDRMTKEMGNV-GTGIAAPQIGINKQLFLF 68 Query: 62 DLQDHAHRKN-----PMVFINPKIITFSDD------------------------------ 86 + + F NPK+ +D Sbjct: 69 EFDSQGLPVHCPNFPLTAFFNPKVEIIEEDVYMPPPGFSITTNKKILNLKRYKKSLQTFE 128 Query: 87 -----------FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 E CLS+P+ A +KR+ + ++D + ++I A+G++A C Q Sbjct: 129 RSVPLKQTSNNTMEMYESCLSVPNIFAKIKRAKRCIITFLDITGKERVIDAEGIIAACFQ 188 Query: 136 HELDHLNGILFIDHLSRLK 154 HE DHL G L +D L K Sbjct: 189 HEYDHLLGRLLVDRLDPKK 207 >gi|225026504|ref|ZP_03715696.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353] gi|224956192|gb|EEG37401.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353] Length = 136 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L++ + P K + M ++ ++L+ + + + +G+AA IGV R++ +++ Sbjct: 12 LKKKAVPATKDD---MPVVQDLLDTLKANETGCVGMAANMIGVNKRIIAVNMGFAN---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + +NP I++ + + +EGCLS+ R R I V Y D + + Q G +A Sbjct: 65 -IAMLNPVIVSKKEPYEA-EEGCLSLKGVR-KTTRYQEIEVEYEDIHFKKQHQKYKGWVA 121 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH GI+ Sbjct: 122 QIIQHEVDHCEGIII 136 >gi|308802341|ref|XP_003078484.1| peptide deformylase (ISS) [Ostreococcus tauri] gi|116056936|emb|CAL53225.1| peptide deformylase (ISS) [Ostreococcus tauri] Length = 175 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 38/100 (38%), Positives = 59/100 (59%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +P P LR + PIE ++++ L M ++MY T G GLAA Q+GV YR++V + Sbjct: 71 IAKYPAPCLRAKNAPIETFDANLEQLSKAMFKIMYETVGCGLAAPQVGVNYRMMVYNEAG 130 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 + +V NPKI+ +S + ++EGCLS P ADV+ Sbjct: 131 EPGKGREVVLCNPKIVKYSKEKDFFEEGCLSFPKMYADVE 170 >gi|15858848|gb|AAK13239.1| peptide deformylase-like protein DefA [Streptococcus pneumoniae] Length = 136 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS+P + + + L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANIIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++F + +EGCLS+ R+ KR I + Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRLAYRDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|325685192|gb|EGD27314.1| formylmethionine deformylase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 143 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 21/155 (13%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51 M + ++ DP+ L + + + ++L+ + + GLAA Sbjct: 1 MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IGV ++ ++ P+V +NPKI+ S + +EGCLS+P R R IT Sbjct: 56 IGVNKAIIAVNAGFL-----PIVMLNPKIVKGSGHYLA-EEGCLSLPGER-PADRYEEIT 108 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 V+Y D + + G +A +QHE+DH G L Sbjct: 109 VKYQDMDLKEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|328770364|gb|EGF80406.1| hypothetical protein BATDEDRAFT_88570 [Batrachochytrium dendrobatidis JAM81] Length = 198 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 29/181 (16%) Query: 1 MVKKPLVI------------FPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYS--TD 43 M + ++ P LR + + + + ++ +M V S Sbjct: 1 MPVRTIIRKIMKGGSPEVLKAGHPFLRTKAEAVSLNDINTPAFLKIVKSMNAVFDSPLHS 60 Query: 44 GIGLAAVQIGVLYRLVVIDLQDH--------AHRKNPMVFINPKIITF----SDDFSVYQ 91 +GLAA QI +L+ + D +NP + S + Sbjct: 61 VLGLAAAQISHPVQLIAYQITDTQLIKEKNLPGPVARTFIVNPVMTILDKLPSAKWKAEY 120 Query: 92 EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 E C SIP+Y V+R+ + V + + A G+LA +QHE+DH+ GILFID + Sbjct: 121 EFCESIPNYSGLVRRADHVHVTGFGLDGNSITVNAKGILARIIQHEMDHMEGILFIDKME 180 Query: 152 R 152 R Sbjct: 181 R 181 >gi|70726701|ref|YP_253615.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435] gi|68447425|dbj|BAE05009.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 162 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + LV P+L + ++PI+ ++ + +L+ ++ + +Y+ + L A QIG+ ++ + Sbjct: 1 MAIQKLVQSTHPVLTKQAQPIKAYDATLKDLLLDLEDTLYAEEASALCAPQIGISKQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + NPKI + S+D + EG +++P +V+RS IT+ D Sbjct: 61 IDM----EVEGLLQLFNPKIKSESNDKIIDLEGSVNLPGIYGEVERSKMITIEANDLEGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A +A + H +D +NGI F L D Sbjct: 117 TIELTAYDDVARMILHIVDQMNGIPFTKRAQHLLTD 152 >gi|116513303|ref|YP_812209.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092618|gb|ABJ57771.1| N-formylmethionyl-tRNA deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 143 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 21/155 (13%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51 M + ++ DP+ L + + + ++L+ + + GLAA Sbjct: 1 MTVQKIIH--DPLSLSQPAAKAAVSD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IGV ++ ++ P+V +NPKI+ S + +EGCLS+P R R IT Sbjct: 56 IGVNKAIIAVNAGFL-----PIVMLNPKIVKRSGHYLA-EEGCLSLPGER-PADRYEEIT 108 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 V+Y D + + G +A +QHE+DH G L Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|319939828|ref|ZP_08014184.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] gi|319811041|gb|EFW07356.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] Length = 136 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + KP+V D +L++ ++P K + I ++ + + + +G+AA IGV R+ Sbjct: 1 MIKPIVK--DMLVLQQKAQPASKEDVGIGQ---DLFDTLRANQDKCVGMAANMIGVQKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +++ + P++ NP + S + +E CLS+ R R ITV Y+D + Sbjct: 56 IIL-----MYDVIPVIMFNPILKRKSSPYRA-EESCLSLAGSR-LTTRYKEITVEYLDQH 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q + A QHELDHL GIL Sbjct: 109 WRKQTLTLKDFPAQICQHELDHLEGILI 136 >gi|224542289|ref|ZP_03682828.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM 15897] gi|224524831|gb|EEF93936.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM 15897] Length = 137 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59 + K +V + L +V+ K + I ++ + + + + +G+A IG ++ Sbjct: 1 MIKEIVK-DNFFLSQVAEKATKEDLYIGT---DLKDTLQAHLHECVGMAGNMIGYNKAVI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + H V NP+II S ++ +EGCLS ++ VKR I V Y D + Sbjct: 57 IFLEDEKMH-----VMYNPEIIKTSGNYHECEEGCLSHVGQKS-VKRYETIKVSYFDESF 110 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + +I G A +QHE DHL GIL Sbjct: 111 KKKIKTYTGFTAQIIQHECDHLKGILI 137 >gi|183602062|ref|ZP_02963431.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219682971|ref|YP_002469354.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|241190548|ref|YP_002967942.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195954|ref|YP_002969509.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218947|gb|EDT89589.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219620621|gb|ACL28778.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|240248940|gb|ACS45880.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250508|gb|ACS47447.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793535|gb|ADG33070.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9] Length = 142 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 7/147 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 +++ +V L R S P + + + ++ E + + + +G+AA IG R++ Sbjct: 1 MQRTIVT-DTSFLSRPSDPADPADPLDAAIAQDLKETLAAHREECVGMAANMIGEPKRVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + V NP+I ++ EGCLS+ R R I V Y Sbjct: 60 AFVDEGLGSAI--TVMFNPQITAADGEYDAC-EGCLSLHGER-HTPRFRRIEVDYTTRKG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH NG+L Sbjct: 116 RARHATFTDWTAQIIQHEIDHCNGVLI 142 >gi|212716409|ref|ZP_03324537.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM 16992] gi|212660662|gb|EEB21237.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM 16992] Length = 141 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 7/137 (5%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 P L + S + + + ++ + + + +G+AA IGV R++ +D R Sbjct: 10 PFLSQPSAEALN-TPEDLAVAQDLKDTLDAHRNGCVGMAANMIGVSKRIIAFVDEDFGGR 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 V NP I + EGCLS+ R V R I V Y D + + G Sbjct: 69 I--FVMFNPTITAKDGAYDTS-EGCLSLKGERRTV-RFQRIEVSYADRKFRERHATFTGF 124 Query: 130 LATCLQHELDHLNGILF 146 A +QHE+DH GI+ Sbjct: 125 TAQIIQHEIDHCEGIII 141 >gi|332363811|gb|EGJ41590.1| peptide deformylase [Streptococcus sanguinis SK355] gi|332365740|gb|EGJ43498.1| peptide deformylase [Streptococcus sanguinis SK1059] Length = 136 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANQENCIGLAANMIGVRKRVIIF-----LYGLVPVVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + +E CLS+ R +R IT+ Y+D + Q Q + GL A QH Sbjct: 69 NPVLRSKSGPYQT-EESCLSLVGSR-PTQRYQEITIDYLDKHWQQQTMTLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GI+ Sbjct: 127 ELDHLEGIII 136 >gi|104773326|ref|YP_618306.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422407|emb|CAI96944.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 143 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 21/155 (13%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51 M + ++ DP+ L + + + ++L+ + + GLAA Sbjct: 1 MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IGV ++ ++ P+V +NP I+ S + +EGCLS+P R R IT Sbjct: 56 IGVNKAIIAVNAGFL-----PIVMLNPTIVKRSGHYLA-EEGCLSLPGER-PADRYEEIT 108 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 V+Y D + + G +A +QHE+DH G L Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|182419964|ref|ZP_02951200.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237665638|ref|ZP_04525626.1| polypeptide deformylase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376215|gb|EDT73800.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237658585|gb|EEP56137.1| polypeptide deformylase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 137 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59 + + +V D L + + K + + +ID+M++ + +GLA+ QIG R++ Sbjct: 1 MVREIVKDNDK-LTQKAVEATKKD---LYIIDDMIDTAKANRDICVGLASNQIGENVRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + D + +NPKIIT S +E CLS R + I V Y D N Sbjct: 57 VALMGDEF-----IPLVNPKIITHSVATYEDEEACLSHEG-TKKATRYSSIEVEYRDRNF 110 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G +A +QHE+DH GIL Sbjct: 111 KKRKNIFKGFVAQIIQHEMDHCEGILI 137 >gi|269114884|ref|YP_003302647.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis] gi|268322509|emb|CAX37244.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis ATCC 23114] Length = 185 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 17/166 (10%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST--------DGIGLAAVQIGVLY 56 LV P+ +LR S+ +E + ++ LI M+ + + +G+AAVQ G+L Sbjct: 9 LVQLPEKVLRNKSKNVELPLTAEDDLLIQKMIFHVDDSQTPQTKFRPAVGVAAVQYGILK 68 Query: 57 RLV-VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIP----DYRADVKRSAF 109 + V+ D + INP +++ S+ QEG CLS+ V R + Sbjct: 69 NIFYVMVKDDQNNYIFRDALINPIMLSHSNHKISLQEGEGCLSVKESDAGQEGFVYRYSR 128 Query: 110 ITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + ++ Y + +I G A LQHE DHL G LFID +++ + Sbjct: 129 VVIKAYSYFEKKEKIYDVSGYPAIVLQHEYDHLQGKLFIDRINKNQ 174 >gi|125717323|ref|YP_001034456.1| peptide deformylase [Streptococcus sanguinis SK36] gi|125497240|gb|ABN43906.1| Formylmethionine deformylase, putative [Streptococcus sanguinis SK36] Length = 136 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L+++S + + + L ++ + + + + IGLAA IGV R+++ + Sbjct: 12 LQQLSERASRED---LYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P+V NP +++ S + +EGCLS+ R +R ITV Y+D N Q Q + GL A Sbjct: 64 PVVMFNPVLLSKSGPYQT-EEGCLSLVGSR-PTQRYQEITVDYLDKNWQQQTMTLKGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GI+ Sbjct: 122 QICQHELDHLEGIII 136 >gi|257064918|ref|YP_003144590.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] gi|256792571|gb|ACV23241.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] Length = 136 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58 + +P+V + + LR S P + + ++++ + +S + +G+AA IGV R+ Sbjct: 1 MIRPVVK--NELALRAPSSPATVADRSVGQ---DLMDTLRFHSHECVGMAANMIGVAKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V D + NP+I S+ + +EGCLS+ R R I V + D Sbjct: 56 IVFDDAGTHR-----LMYNPEITAKSEPYQT-EEGCLSLTGRR-PATRYRRIEVTFRDER 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +G A +QHE+DH NGI+ Sbjct: 109 FASRTEAFEGWTAQIIQHEIDHCNGIVI 136 >gi|224065146|ref|XP_002190853.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata] Length = 131 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 14/118 (11%) Query: 49 AVQIGVLYRLVVIDLQD-----------HAHRKNPM---VFINPKIITFSDDFSVYQEGC 94 A Q+GV R+ + AHR P V +NP + EGC Sbjct: 1 APQLGVPLRVFAAEKPPARCARYPPALRQAHRIEPFPLRVLVNPALRILDSRLVTGPEGC 60 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 SI + A V R + V +D A G A +QHE+DHL+GIL+ID + Sbjct: 61 ASIHGFSAYVPRHWAVHVSGVDELGVPVSWEASGWAARIIQHEMDHLDGILYIDRMEP 118 >gi|319938534|ref|ZP_08012927.1| peptide deformylase [Coprobacillus sp. 29_1] gi|319806298|gb|EFW02974.1| peptide deformylase [Coprobacillus sp. 29_1] Length = 137 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + +V IL + S + M ++ ++ + + + +G+AA IG R++ Sbjct: 1 MIRDIVT-DQFILSQKSVEATLDD---MAIVQDLRDTLVAHEDHCVGMAANMIGYHKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + + +V INP I+ S + EGCLS +A VKR I V Y D + Sbjct: 57 IV-----KNNNDHLVMINPIILKTSGRYYDTHEGCLSHIGEKA-VKRYEKIKVEYKDIHF 110 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + +I +G +A +QHE+DH GIL Sbjct: 111 KVKIKTFEGYVAQIIQHEIDHCQGILI 137 >gi|329668141|gb|AEB94089.1| polypeptide deformylase [Lactobacillus johnsonii DPC 6026] Length = 137 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57 M KP++ D + L+ S P K + + ++ + + + GLAA IGV R Sbjct: 1 MAVKPIIH--DELSLKFKSLPATKQD---LGAATDLKDTLLANKDKAAGLAANMIGVQKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + + P+V +NP I+ D + Y EGCLS+ R +R ITV+Y + Sbjct: 56 IIALFVGPL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGER-PTERYKNITVKYQNE 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + A +QHE+DH NGIL Sbjct: 109 NLETRQQSFSDFTAEVIQHEVDHCNGILI 137 >gi|325663348|ref|ZP_08151798.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] gi|325470802|gb|EGC74032.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] Length = 136 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 19/150 (12%) Query: 2 VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLY 56 + KP+ + F L + S P K + + ++++ + + +G+AA IGV Sbjct: 1 MVKPIMKDIFF----LGQRSDPATKADLQVGR---DLMDTLAANREGCVGMAANMIGVKK 53 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 R++++++ +V NP ++ + +EGCLS+ R R I V Y+D Sbjct: 54 RVIIVNMGFVD-----VVMFNPVLVRKESPYET-EEGCLSLTGVR-KTTRYQTIEVEYLD 106 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q + DG A QHELDHL GIL Sbjct: 107 MNWKKQNLKLDGWTAQICQHELDHLEGILI 136 >gi|313885254|ref|ZP_07819006.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] gi|312619945|gb|EFR31382.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] Length = 136 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59 + K +V + L + ++P K + +I ++ + + + +G+AA IG+ ++ Sbjct: 1 MIKEIVT-DNFFLSQKAKPATKED---QAVIQDLKDTLKAHRHHCVGMAANMIGINKAII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + +V +NP+I + + + QEGCLS + +R I V+Y+D + Sbjct: 57 IVAMGPLD-----LVMVNPEITSQAKPYQT-QEGCLSHTGQK-PTQRYQEIQVQYLDEHF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + G LA +QHE+DHL GIL Sbjct: 110 HPKNRRFQGPLAQVIQHEMDHLAGILI 136 >gi|325688025|gb|EGD30044.1| peptide deformylase [Streptococcus sanguinis SK72] gi|327469220|gb|EGF14692.1| peptide deformylase [Streptococcus sanguinis SK330] Length = 136 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + +E CLS+ R +R IT+ Y+D + Q Q + GL A QH Sbjct: 69 NPVLRSKSGPYQT-EESCLSLVGSR-PTQRYQEITIDYLDKHWQQQTMTLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GI+ Sbjct: 127 ELDHLEGIII 136 >gi|317488626|ref|ZP_07947169.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325831636|ref|ZP_08164853.1| peptide deformylase [Eggerthella sp. HGA1] gi|316912278|gb|EFV33844.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325486507|gb|EGC88956.1| peptide deformylase [Eggerthella sp. HGA1] Length = 136 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58 + +P++ + +L++ S + + I ++L+ + + +G+AA IG + R+ Sbjct: 1 MIRPIMR--NELVLQQPSTAATEADLPIAQ---DLLDTLAAHRHSCVGMAANMIGEVKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D + + +NP+I++ + + +EGCLS+ R R I V Y D Sbjct: 56 IAFD-----NEGAYLAMLNPEIVSRAGAYET-EEGCLSLAGTR-PATRYRTIKVSYQDLA 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + ++ G A +QHE+DH NG+L Sbjct: 109 MKPRVKTFTGFTAQIIQHEIDHCNGVLI 136 >gi|169334954|ref|ZP_02862147.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM 17244] gi|169257692|gb|EDS71658.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM 17244] Length = 158 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 12/154 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLID-NMLEVMYSTD-----GIGLAAVQIGVL 55 + K +++ +P L +VS+ +++ ++ I+ ++ + + + G +AA QIG+ Sbjct: 1 MIKEILLLGNPNLYKVSKEVKEEEIQLLKNIEIDLHDTLMNYRKVHGAGRAIAAPQIGIE 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R++ +++ P++ +NPK+ + + C+S P+ V+R + Y Sbjct: 61 KRILYMNID------KPILIVNPKLTFPDSEKIQVMDDCMSFPNLTVKVERYKNCILNYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 D N + L+ +QHE DHL+GIL Sbjct: 115 DRNFSDCKMILKDDLSELIQHEYDHLDGILATMR 148 >gi|152990073|ref|YP_001355795.1| hypothetical protein NIS_0324 [Nitratiruptor sp. SB155-2] gi|151421934|dbj|BAF69438.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 266 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K ++ +PD L ++S I + I +++ + + + + LAA+QIG R++ Sbjct: 1 MAK--ILTYPDHTLLQISGLIRDFKDPKINEIVEEIKKTIEENNLQALAAIQIGEPLRII 58 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+ +D + V INP I + E S+P+ V+R I V Y D Sbjct: 59 VLKKKDGTYE----VMINPTIYGKEGQYFASTESDESLPNIEVTVQRYPVIKVMYEDLQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A A LQ ++D + G D LS Sbjct: 115 NQKFYTAKDDEAVLLQRKIDMVFGGYLFDKLS 146 >gi|168209867|ref|ZP_02635492.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|170712027|gb|EDT24209.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] Length = 136 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + +P+V +L + S K + + +ID++++ + +G+AA IGV R Sbjct: 1 MIRPIVK---DVLFLGQKSELATKED---IGIIDDLVDTLRVNLESCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + + +NP I+ + +E CLS+ +R R I V Y+D Sbjct: 55 ILVFSIGNII-----VPMVNPVILKKEKSYET-EESCLSLTGFR-KTTRYEIIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH +GI+ Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136 >gi|332363261|gb|EGJ41046.1| peptide deformylase [Streptococcus sanguinis SK49] Length = 136 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + + IGLAA IGV R+++ + P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP +++ S + +EGCLS+ R +R ITV Y+D + Q Q + GL A QH Sbjct: 69 NPVLLSKSGPYKT-EEGCLSLVGSR-PTQRYQEITVDYLDKHWQQQTMTLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GI+ Sbjct: 127 ELDHLEGIII 136 >gi|160935285|ref|ZP_02082667.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC BAA-613] gi|158441643|gb|EDP19343.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC BAA-613] Length = 173 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 12/150 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIG--LAAVQIGVL 55 V++ +++ +P L S+ ++ + + + L + G+G +AA QIGV Sbjct: 14 VERTILLLGNPELYEASQEVKIEELHQMEQVREDLKDTLLAFRARYGVGRAIAAPQIGVK 73 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R++ + H P++FINP++ + + C+S PD VKR + Y Sbjct: 74 KRVI------YRHLDTPVLFINPRLTFPEQEMIDVLDDCMSFPDLLVRVKRYKRCIIYYK 127 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145 D + G ++ +QHE DHL+GIL Sbjct: 128 DLEWNDCSMELKGDMSELIQHEYDHLDGIL 157 >gi|254520028|ref|ZP_05132084.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA] gi|226913777|gb|EEH98978.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA] Length = 136 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + +P+V IL + S K + + +ID++++ + + +G+AA IGV R Sbjct: 1 MIRPIVK---DILFLGQKSEYATKAD---VAVIDDLVDTLRANLEQCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + D + +NP I+ + +E CLS+ +R R I V Y+D Sbjct: 55 ILVFSIGDII-----VPMVNPVIVKKDKVYEA-EESCLSLSGFR-KTMRYEAIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH GI+ Sbjct: 108 NFKKHKQTFTGFTAQVIQHEIDHFEGIII 136 >gi|42519881|ref|NP_965811.1| peptide deformylase [Lactobacillus johnsonii NCC 533] gi|41584171|gb|AAS09777.1| polypeptide deformylase [Lactobacillus johnsonii NCC 533] Length = 137 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57 M KP++ D + L+ S P K + + ++ + + S GLAA IGV R Sbjct: 1 MAVKPIIH--DELSLKFKSLPATKQD---LGAATDLKDTLLSNKDRAAGLAANMIGVQKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + + P+V +NP I+ D + Y EGCLS+ R +R ITV+Y + Sbjct: 56 IIALFVGPL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGER-PTERYKTITVKYQNE 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + A +QHE+DH NGIL Sbjct: 109 NLETRQQSFSDFTAEVIQHEVDHCNGILI 137 >gi|325696895|gb|EGD38782.1| peptide deformylase [Streptococcus sanguinis SK160] Length = 136 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 9/118 (7%) Query: 31 LIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88 L ++ + + + +GLAA IGV R+++ + P+V NP + + S + Sbjct: 26 LAQDLQNTLQANRENCLGLAANMIGVRKRVIIF-----LYGLVPVVMFNPVLRSKSGPYQ 80 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 +EGCLS+ R +R ITV Y+D N Q Q + GL A QHELDHL GIL Sbjct: 81 T-EEGCLSLTGSR-PTQRYQEITVDYLDKNWQQQTMTLKGLPAQICQHELDHLEGILI 136 >gi|291519179|emb|CBK74400.1| N-formylmethionyl-tRNA deformylase [Butyrivibrio fibrisolvens 16/4] Length = 136 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + K +V D I L++ S P + ++ +I ++++ + + +G+AA IGV ++ Sbjct: 1 MVKQIVK--DQIFLQQKSEPATEADA---QVIVDLMDTLKANIDRCVGMAANMIGVKKQI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ +NP I S + +E CLS+ R V R I V Y+D N Sbjct: 56 IVVAAGPFI-----FPMVNPVITKKSGKYET-EESCLSLDGVRPCV-RYDEIEVDYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q + G A +QHE+ H +G L Sbjct: 109 FQPKHGKYSGFTAQIIQHEIQHFSGELI 136 >gi|325289165|ref|YP_004265346.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271] gi|324964566|gb|ADY55345.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271] Length = 136 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 12/142 (8%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQ 64 +I + LR S P + + + ++L+ + + G +GLAA IGV R++ + Sbjct: 5 IIKDEAFLRIPSAPAAAEDLSV---VQDLLDTLSANAGCCVGLAANMIGVAKRIIAV--- 58 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +V +NP+I+ S+ + +E CLS+ R +R I V+Y D Q ++ Sbjct: 59 --TAEGGYLVMLNPEIVKQSEPYET-EEACLSLAGTR-KARRCKNIRVQYQDTALQTRLQ 114 Query: 125 YADGLLATCLQHELDHLNGILF 146 G A +QHE+DH NGIL Sbjct: 115 NFKGFTAQIIQHEIDHCNGILI 136 >gi|291547509|emb|CBL20617.1| N-formylmethionyl-tRNA deformylase [Ruminococcus sp. SR1/5] Length = 136 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P K + + + ++ + + + +G+AA IGV ++++++ Sbjct: 12 LGQPSEPATKAD---IQVGKDLQDTLQANRERCVGMAANMIGVKKNIIIVNMGFIN---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP I++ D + +EGCLS+ R R I V Y D + Q G A Sbjct: 65 -VVMFNPVIVSKRDMYET-EEGCLSLDGVR-KTTRYQEIEVEYYDFKWKKQRQKLSGWTA 121 Query: 132 TCLQHELDHLNGILF 146 QHE+DHL+G + Sbjct: 122 QICQHEIDHLSGKII 136 >gi|260589802|ref|ZP_05855715.1| peptide deformylase [Blautia hansenii DSM 20583] gi|331083229|ref|ZP_08332345.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|260539843|gb|EEX20412.1| peptide deformylase [Blautia hansenii DSM 20583] gi|330404618|gb|EGG84158.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 136 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L + S P K + I +++ L +G+AA IGV +++I++ + Sbjct: 12 LAQKSEPATKEDLHIGQDLEDTLAANRER-CVGMAANMIGVKKNIIIINMGFVD-----V 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 + NP I+ + +EGCLS+ R V R I V Y D N + Q G A Sbjct: 66 LMFNPVIVKKDTPYET-EEGCLSLEGVRPAV-RFQNIEVEYYDKNWKKQRQKLTGWTAQI 123 Query: 134 LQHELDHLNGILF 146 QHE+DHL+GI+ Sbjct: 124 CQHEIDHLDGIII 136 >gi|148377446|ref|YP_001256322.1| formylmethionine deformylase [Mycoplasma agalactiae PG2] gi|148291492|emb|CAL58878.1| Formylmethionine deformylase [Mycoplasma agalactiae PG2] Length = 187 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 73/167 (43%), Gaps = 20/167 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVL 55 LV P +LR+ S + + S+ + L M+ + + G+G+AAVQ G+L Sbjct: 7 DLVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAAVQYGIL 66 Query: 56 YRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLS----IPDYRADVK 105 R+ I D+ D + VF NP II S+ EGCLS IP+ V Sbjct: 67 KRVFYINITEDMVDDKKQVLRDVFFNPTIIAMSNSKIALSQGEGCLSVGRNIPNQSGLVY 126 Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLS 151 R I + + Y G A QHELDHL G LFID + Sbjct: 127 RHKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRID 173 >gi|167756524|ref|ZP_02428651.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402] gi|167702699|gb|EDS17278.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402] Length = 189 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 22/174 (12%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ + +R VS+ + I ++ L+ M E + ++ +G+A Sbjct: 3 TMKDIIDDHNEKIREVSKEVALPITNEERELLLQMHEFLVNSQDPETSEKYDLRPAVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDD--FSVYQEGCLSI-PDY 100 A+Q+G+ R+ I + D N + +NPKII+ ++ + EGCLS+ + Sbjct: 63 AIQLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLSVNDEV 122 Query: 101 RADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + V R A +TV+ D Q I A G L+ CLQHELDH G LF D +++ Sbjct: 123 QGYVPRYAKVTVKGYDVLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINKE 176 >gi|218283358|ref|ZP_03489392.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989] gi|218215912|gb|EEC89450.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989] Length = 145 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + KP++ + L S P K+++ + ++ + + YS +G+AA IGV ++ Sbjct: 10 MIKPIMK-DEAFLAIKSAPATKMDT---QVAQDLKDTLQAYSDQCVGMAANMIGVSKNII 65 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + ++ +V NPKI S + V +EGCLS+ R + R ITV Y D + Sbjct: 66 IFAIEPAQ-----IVMYNPKITKKSRPYKV-KEGCLSLEGER-NTTRYENITVEYQDESF 118 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + G +A +QHE+DH NGI+ Sbjct: 119 KKCKQSYSGFVAQIIQHEIDHCNGIII 145 >gi|300121292|emb|CBK21672.2| unnamed protein product [Blastocystis hominis] Length = 283 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 23/183 (12%) Query: 9 FPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + +LR+ R I + + ++ + N + + G++A Q+ R+ VI +D++ Sbjct: 16 LGEKVLRQKCRLIKDPTSDEMQDFAMNAMFTCIRNNAFGVSAPQLYRPIRMFVI--RDYS 73 Query: 68 HRKNP-------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +P M + NP+I + S E CLS P A V R I + Y Sbjct: 74 TVPDPSQLSAEQHMSLPLMPYFNPRIESRSRKLMGEFESCLSDPWNVAFVARPHTIGISY 133 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID-------HLSRLKRDMITKKMSKLVQ 167 +D ++Q G A QHE DHL G D ++S+ + K+ Sbjct: 134 IDGFGKYQEKEISGWEAQVFQHEYDHLEGKTMADMCTQKGLYMSKERYKRCEAYWKKVEN 193 Query: 168 LRD 170 L D Sbjct: 194 LPD 196 >gi|293402350|ref|ZP_06646487.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304197|gb|EFE45449.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 139 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 9/136 (6%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRK 70 +L++ S P + + + N+LE + + + +G+AA IGV R++ D Sbjct: 11 LLQKTSEPATEKDLWVAK---NLLETLQAHEDRCVGMAANMIGVFKRIIAFVDIDTGSH- 66 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 V +NP+II S + + QE CLSI R +R I VRY D + +I Sbjct: 67 --WVMLNPEIIKTSKETYLAQEQCLSISGIR-QTRRYRRIKVRYQDEHMNIKIKTFHDKT 123 Query: 131 ATCLQHELDHLNGILF 146 A +QHE+DH NGIL Sbjct: 124 AQIIQHEIDHCNGILI 139 >gi|291320109|ref|YP_003515367.1| formylmethionine deformylase [Mycoplasma agalactiae] gi|290752438|emb|CBH40409.1| Formylmethionine deformylase [Mycoplasma agalactiae] Length = 187 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 73/167 (43%), Gaps = 20/167 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVL 55 LV P +LR+ S + + S+ + L M+ + + G+G+AAVQ G+L Sbjct: 7 DLVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAAVQYGIL 66 Query: 56 YRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLS----IPDYRADVK 105 R+ I D+ D + VF NP II S+ EGCLS IP+ V Sbjct: 67 KRVFYINITEDMVDDKSQILRDVFFNPTIIAMSNSKIALSQGEGCLSVRRNIPNQSGLVY 126 Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLS 151 R I + + Y G A QHELDHL G LFID + Sbjct: 127 RHKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRID 173 >gi|301301079|ref|ZP_07207239.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851349|gb|EFK79073.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 136 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + + IL + S P K + + ++ ++++ + + +G+AA IG ++ Sbjct: 1 MIRDI-NHDVKILSKKSTPASKND---IAIVQDLVDTLNYHRDHCVGMAANMIGKNKCII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + INP I S +S EGCLS+ R + R I V Y++ + Sbjct: 57 ACQFGPLI-----VAMINPVITKKSQKYSTS-EGCLSLTGER-ETTRFNKIKVSYLNQSF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q +G A +QHE+DH NGIL Sbjct: 110 QKVHATFEGFNAQIIQHEIDHCNGILI 136 >gi|227543949|ref|ZP_03973998.1| peptide deformylase [Lactobacillus reuteri CF48-3A] gi|300909699|ref|ZP_07127160.1| peptide deformylase [Lactobacillus reuteri SD2112] gi|227186065|gb|EEI66136.1| peptide deformylase [Lactobacillus reuteri CF48-3A] gi|300893564|gb|EFK86923.1| peptide deformylase [Lactobacillus reuteri SD2112] Length = 136 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + KP++ +L + + K + L +++++ + + + +G+AA IGV + Sbjct: 1 MIKPIIK-DQQLLAKKATLTTKADLP---LANDLIDTLNAHQAECVGMAANMIGVNKNAI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + ++ NP+I+ S + EGCLS+ R KR ITV++ + + Sbjct: 57 IARIGPFN-----VLMFNPQIVAKSHPYQTT-EGCLSLSGTR-PTKRYKQITVKFRNQSW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q Q + A +QHE+DH NGI+ Sbjct: 110 QVQTLELTDFAAEIIQHEIDHCNGIII 136 >gi|225859308|ref|YP_002740818.1| peptide deformylase [Streptococcus pneumoniae 70585] gi|303255336|ref|ZP_07341406.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|303260177|ref|ZP_07346149.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|303262567|ref|ZP_07348508.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|303264969|ref|ZP_07350884.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|303266432|ref|ZP_07352320.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|303269392|ref|ZP_07355162.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|225720965|gb|ACO16819.1| polypeptide deformylase [Streptococcus pneumoniae 70585] gi|301794560|emb|CBW37004.1| peptide deformylase [Streptococcus pneumoniae INV104] gi|301802269|emb|CBW35021.1| peptide deformylase [Streptococcus pneumoniae INV200] gi|302597704|gb|EFL64780.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|302636284|gb|EFL66778.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|302638674|gb|EFL69137.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|302641060|gb|EFL71437.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|302644010|gb|EFL74269.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|302645488|gb|EFL75720.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|332073889|gb|EGI84367.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA41301] Length = 136 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS P + + + L ++ + + + +GLAA IG+ R+++ Sbjct: 6 VKDILF-----LSQVSHPASQED---LYLARDLQDTLLANRDTCVGLAANMIGMQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++F + +EGCLS+ R+ KR I + Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRLAYRDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|116493404|ref|YP_805139.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745] gi|116103554|gb|ABJ68697.1| N-formylmethionyl-tRNA deformylase [Pediococcus pentosaceus ATCC 25745] Length = 136 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 12/142 (8%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQ 64 VI IL + S P K + + + ++++ + + +G+AA IGV R++V+ + Sbjct: 5 VIHDQQILSQTSIPATKQDLSV---VMDLMDTLKANSERCVGMAANMIGVHKRIIVVTMG 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + INP I+ + ++ +EGCLS+ R+ R I V+Y+D + Sbjct: 62 MMN-----VPMINPVILKKGNPYTT-EEGCLSLTGERS-TTRYDEIEVQYLDLEFKKHTQ 114 Query: 125 YADGLLATCLQHELDHLNGILF 146 +A +QHE+DH +GI+ Sbjct: 115 EFKEFIAQIIQHEVDHCDGIII 136 >gi|225350925|ref|ZP_03741948.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158381|gb|EEG71623.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 141 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 7/137 (5%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 P L + S + + + ++ + + + +G+AA IGV R++ +D R Sbjct: 10 PFLSQPSAEALN-TPEDLAVAQDLKDTLDAHRNGCVGMAANMIGVSKRIIAFVDEDFGDR 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 V NP I + EGCLS+ R V R I V Y D + + G Sbjct: 69 I--FVMFNPTITAKDGAYDAS-EGCLSLKGERRTV-RFQRIEVSYADRKFRERHATFTGF 124 Query: 130 LATCLQHELDHLNGILF 146 A +QHE+DH GI+ Sbjct: 125 TAQIIQHEIDHCEGIII 141 >gi|237733122|ref|ZP_04563603.1| polypeptide deformylase [Mollicutes bacterium D7] gi|229383804|gb|EEO33895.1| polypeptide deformylase [Coprobacillus sp. D7] Length = 186 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 22/172 (12%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K ++ + +R VS+ + I ++ L+ M E + ++ +G+AA+ Sbjct: 2 KDIIDDHNEKIREVSKEVALPITNEERELLLQMHEFLVNSQDPETSEKYDLRPAVGIAAI 61 Query: 51 QIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDD--FSVYQEGCLSI-PDYRA 102 Q+G+ R+ I + D N + +NPKII+ ++ + EGCLS+ + + Sbjct: 62 QLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLSVNDEVQG 121 Query: 103 DVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R A +TV+ D Q I A G L+ CLQHELDH G LF D +++ Sbjct: 122 YVPRYAKVTVKGYDILTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINKE 173 >gi|152991786|ref|YP_001357507.1| hypothetical protein SUN_0190 [Sulfurovum sp. NBC37-1] gi|151423647|dbj|BAF71150.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 273 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 7/163 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + LVI+PD + S + N + +++++M + M + D +AA+QI Y +++I Sbjct: 1 MVQKLVIYPDDRMNCTSTDVRSFNQTLWDVLEDMRDTMLAHDIKAMAAMQIAYPYNIILI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ- 120 + H +INP+II ++D +E + PD + R I + Y D N Q Sbjct: 61 KEGEEYHE-----YINPRII-KNEDLFDSEESSIHYPDVTVTIPRYGKIKLVYEDRNGQV 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 H D LA LQ ++D G +D + + R+ I ++ Sbjct: 115 HYEDIEDRELAATLQRKIDITFGGNILDKVDKNTREKILDALA 157 >gi|329116594|ref|ZP_08245311.1| peptide deformylase [Streptococcus parauberis NCFD 2020] gi|326906999|gb|EGE53913.1| peptide deformylase [Streptococcus parauberis NCFD 2020] Length = 136 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + +V DP+ L ++ K + I + + L + IGLAA IG +++ Sbjct: 1 MLRTIVK--DPLFLSEKAQVATKEDLWIGKDLQDTL-TYHRDRCIGLAANMIGEKKAVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + +V NP+II SD + +E CLS+ KR ITVRY+D N + Sbjct: 58 ISMGFVD-----LVMFNPQIIKQSDVYQT-EESCLSLTG-SKPTKRFETITVRYLDMNWR 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHE+DHL G L Sbjct: 111 EKNLTLTGLPAQICQHEMDHLEGKLI 136 >gi|291457332|ref|ZP_06596722.1| peptide deformylase [Bifidobacterium breve DSM 20213] gi|291381167|gb|EFE88685.1| peptide deformylase [Bifidobacterium breve DSM 20213] Length = 139 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR S P E + M ++++ + + +G+AA IGV R++ +D R Sbjct: 12 LRTPSEPAEPSDEAAMQ---DLVDTLEANRSRCVGMAANMIGVGKRIIAFVDEDLGGRV- 67 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V +NP I T SD QEGCLS+ R R I V Y D + + G A Sbjct: 68 -TVMLNPVI-TASDGAFDTQEGCLSLAGER-RTLRYRRIEVDYEDRRFRARHATFTGWTA 124 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 125 QIIQHEVDHCNGIII 139 >gi|322372342|ref|ZP_08046878.1| peptide deformylase [Streptococcus sp. C150] gi|321277384|gb|EFX54453.1| peptide deformylase [Streptococcus sp. C150] Length = 136 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYR 57 + KP+V + L + S K + + L ++ + + Y +G+AA IGV R Sbjct: 1 MIKPIVK---DVFFLGQKSTEATKED---LYLAKDLRDTLEFYKDACVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++++++ +V NP +++ S F +E CLS+ R +R I V Y+D Sbjct: 55 VIIVNIGFVN-----LVMFNPVLVSKSSLFQT-EESCLSLEGSR-PTRRYESIEVAYLDE 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 + + G+LA +QHELDHL GI+ Sbjct: 108 QWMPKQLSFSGMLAQIIQHELDHLEGIII 136 >gi|169350936|ref|ZP_02867874.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552] gi|169291998|gb|EDS74131.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552] Length = 189 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 22/173 (12%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ + +R VS+ + ++ D +L+ M E + ++ +G+A Sbjct: 3 TMKDIIDDSNKKIREVSKEVPLPLSDDDRDLLFKMHEFLVNSQDPELSKKYDLRPAVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDD--FSVYQEGCLSI-PDY 100 A+Q+G+ R+ I + D+ + N + +NPKI++++ F EGCLS+ + Sbjct: 63 AIQLGIPKRMCAIHVLDYDSKGNVVKANDYALVNPKIVSYTQKNSFLRDGEGCLSVNKEV 122 Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV D Q I A G L+ CLQHELDH G LF D +++ Sbjct: 123 QGYVPRHAKVTVEGYDLLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINK 175 >gi|328945770|gb|EGG39921.1| peptide deformylase [Streptococcus sanguinis SK1087] Length = 136 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L++ S + + + + + L+ + +GLAA IGV R+++ + P+ Sbjct: 12 LQQPSEQASREDLYLAQDLQDTLQTNRE-NCLGLAANMIGVRKRVIIF-----LYGLVPV 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP + S + +EGCLS+ R +R ITV Y+D N Q Q + GL A Sbjct: 66 VMFNPVLRYKSGPYQT-EEGCLSLTGSR-LTQRYQEITVDYLDKNWQQQTMTLKGLPAQI 123 Query: 134 LQHELDHLNGILF 146 QHELDHL GI+ Sbjct: 124 CQHELDHLEGIII 136 >gi|171920111|ref|ZP_02690482.2| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508474|ref|ZP_02689332.2| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701869|ref|ZP_02553797.2| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902473|gb|EDT48762.1| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675891|gb|EDT87796.1| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701174|gb|EDU19456.1| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 198 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 18/179 (10%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P P+LR V++ IE +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPVLREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAF 109 G R I D A +++ + INP II S + + EGCLS+ D V R+ Sbjct: 81 GWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKK 139 Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + V+ D ++ I G++A C+QHE+ HL+ L+ D++++ + +K+ + Sbjct: 140 VHVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQQQPFYADPSWTKIGR 198 >gi|302876100|ref|YP_003844733.1| formylmethionine deformylase [Clostridium cellulovorans 743B] gi|307686823|ref|ZP_07629269.1| peptide deformylase [Clostridium cellulovorans 743B] gi|302578957|gb|ADL52969.1| formylmethionine deformylase [Clostridium cellulovorans 743B] Length = 136 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + KP+V +L + S K + + ++D++++ + S + +GLAA IGV R Sbjct: 1 MIKPIVK---DVLFLGQKSEEATKND---IVVVDDLIDTLRSNLENCVGLAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + D + INP I+ + +E CLS+ +R KR I V Y+D Sbjct: 55 ILVFTIGDII-----VPMINPVILKK-EKLYETEESCLSLIGFR-KTKRYEMIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH GI+ Sbjct: 108 AFKKQKQVFTGFTAQIIQHEMDHFEGIII 136 >gi|327461858|gb|EGF08189.1| peptide deformylase [Streptococcus sanguinis SK1] Length = 136 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L+++S + + + L ++ + + + + IGLAA IGV R+++ + Sbjct: 12 LQQLSERASRED---LYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P+V NP + + S + +E CLS+ R +R IT+ Y+D + Q Q + GL A Sbjct: 64 PVVMFNPVLRSKSGPYQT-EESCLSLVGSR-PTQRYQEITIDYLDKHWQQQTMTLKGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GI+ Sbjct: 122 QICQHELDHLEGIII 136 >gi|238061746|ref|ZP_04606455.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883557|gb|EEP72385.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 509 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 11/156 (7%) Query: 6 LVIFPDPILRRVSR----PIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 +V +LR+ SR P E ++ + + + + E+ + G+G+AA Q+G+ + Sbjct: 337 IVQRGADLLRQPSRQFDLPAEAGVAREVVDRLGSALVRLDELHPFSKGVGIAATQLGLAW 396 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+ D A P+V +NP+++ S D EGCLS D+R V RS I V + Sbjct: 397 AAAVVRPPDRA--AEPVVLLNPRVVDSSPDTDEQYEGCLSFFDHRGLVPRSLRIDVEHAQ 454 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I + +A + HE+DHL G L++D ++ Sbjct: 455 WDGGRLITSFEFAMARLVAHEIDHLEGRLYVDRMTP 490 >gi|291523053|emb|CBK81346.1| N-formylmethionyl-tRNA deformylase [Coprococcus catus GD/7] Length = 136 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P + + + ++ + + + + +G+AA IG+ ++++++ Sbjct: 12 LGQKSEPATEAD---IQTGRDLQDTLKAHRAECVGMAANMIGIKKNVIIVNMGIVD---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP ++ S + +EGCLS+ R R I V Y D + + G A Sbjct: 65 -LVMFNPVLLKKSGPYET-EEGCLSLTGVR-KTTRYREIEVEYRDMSWTVRRQKLSGWTA 121 Query: 132 TCLQHELDHLNGILF 146 QHE+DHLNGI+ Sbjct: 122 QICQHEMDHLNGIII 136 >gi|322390160|ref|ZP_08063692.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] gi|321143120|gb|EFX38566.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] Length = 136 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S + L ++ + + + + +GLAA IGV R ++I + + Sbjct: 12 LGQKSEEATPED---RTLALDLQDTLNAHLLECVGLAANMIGVKKRAIIIRMGNEN---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP ++ + +EGCLS+ R R +TV Y D N + + I+ G A Sbjct: 65 -LVMFNPVLLEKKKPYQT-EEGCLSLVGSR-PTTRYEEMTVAYRDVNWKAKTIHLSGFPA 121 Query: 132 TCLQHELDHLNGILF 146 QHE+DHL G++ Sbjct: 122 QICQHEMDHLEGVII 136 >gi|182624168|ref|ZP_02951955.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] gi|177910784|gb|EDT73144.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] Length = 136 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + +P+V +L + S K + + +ID++++ + + +G+AA IGV R Sbjct: 1 MIRPIVK---DVLFLGQKSELATKED---IGIIDDLVDTLRANLESCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + + +NP I+ + +E CLS+ +R R I V Y+D Sbjct: 55 ILVFSIGNII-----VPMVNPVILKKEKSYET-EESCLSLTRFR-KTTRYEIIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH GI+ Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFEGIII 136 >gi|239940680|ref|ZP_04692617.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998] gi|239987159|ref|ZP_04707823.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 11379] gi|291444118|ref|ZP_06583508.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998] gi|291347065|gb|EFE73969.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998] Length = 189 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 6 LVIFPDPILRRVSR----PIEKINSDIMNLIDNMLEVMYS-------TDGIGLAAVQIGV 54 +V IL +R P E+ + ++D + M G+GLAA QIG+ Sbjct: 15 VVQQGAAILTERARAFDLPAER--DEAERVVDELFAAMDRIGQVHPFAKGMGLAAPQIGI 72 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 V+ A +V +NP+I ++ + EGCLS D R V R ITV Sbjct: 73 SRAAAVVQPPGDAPS---IVLLNPRITVCCNESDEHYEGCLSFFDVRGPVPRPLTITVET 129 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + + LA + HE+DHL G+L+ ++ Sbjct: 130 TTQSGETVTTAYERGLARLIHHEIDHLGGLLYTARMN 166 >gi|260663513|ref|ZP_05864403.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] gi|260552054|gb|EEX25107.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] Length = 136 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + P+ +L++ +RP + L + ++ + + IG+AA IG ++ Sbjct: 1 MIYPI-NHDQQVLQQPARPATNAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + L + +NP+++ + + +EGCLS+ R+ R ITV Y D Sbjct: 57 AVSLGPVN-----VAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A +QHE DHL GIL Sbjct: 110 AQQELELTGLAAQAVQHECDHLRGILI 136 >gi|296875884|ref|ZP_06899945.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] gi|296433125|gb|EFH18911.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] Length = 136 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S + L ++ + + + + +GLAA IGV R ++I + Sbjct: 12 LGQKSEEATPED---RTLALDLQDTLNAHLLECVGLAANMIGVKKRAIIIRMGSEN---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP ++ + +EGCLS+ R R I+V Y D N + + I+ G A Sbjct: 65 -LVLFNPVLLEKKKPYQT-EEGCLSLVGSR-PTTRYEEISVAYRDVNWKAKKIHLSGFPA 121 Query: 132 TCLQHELDHLNGILF 146 QHE+DHL GI+ Sbjct: 122 QICQHEMDHLEGIII 136 >gi|259048010|ref|ZP_05738411.1| peptide deformylase [Granulicatella adiacens ATCC 49175] gi|259035349|gb|EEW36604.1| peptide deformylase [Granulicatella adiacens ATCC 49175] Length = 137 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 8 IFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQ 64 I DP+ L + S + ++ ++ + + + +G+AA IGV ++++ + Sbjct: 5 IMKDPLFLSQKSSVADP--KADAQVVRDLQDTLRANRDRCVGMAANMIGVKKNIIIVAIG 62 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +V +NP+I + +EGCLS R I V Y D + + Sbjct: 63 PMD-----LVMLNPRITKKQGPYET-EEGCLSHTG-TKKTTRYQTIEVAYTDPSGKKHTG 115 Query: 125 YADGLLATCLQHELDHLNGILF 146 A +QHE+DHL GIL Sbjct: 116 TFTDFTAQVIQHEIDHLEGILI 137 >gi|325693656|gb|EGD35575.1| peptide deformylase [Streptococcus sanguinis SK150] gi|327458954|gb|EGF05302.1| peptide deformylase [Streptococcus sanguinis SK1057] gi|332360611|gb|EGJ38421.1| peptide deformylase [Streptococcus sanguinis SK1056] Length = 136 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L+++S + + + L ++ + + + + IGLAA IGV R+++ + Sbjct: 12 LQQLSERASRED---LYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P+V NP +++ S + +EGCLS+ R +R ITV Y+D + Q Q + GL A Sbjct: 64 PVVMFNPVLLSKSGPYKT-EEGCLSLVGSR-PTQRYQEITVDYLDKHWQQQTMTLKGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GI+ Sbjct: 122 QICQHELDHLEGIII 136 >gi|13637693|sp|Q48661|DEF_LACLA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase Length = 196 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 29/176 (16%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ P LR V+ + ++ + + L + ML+ ++++ G+GLAA Q Sbjct: 6 DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 65 Query: 52 IGVLYRLVVI-------------DLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS 96 +G+L +++ + ++ K + N K+++ S D EGCLS Sbjct: 66 LGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 125 Query: 97 IP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + V R A +TV Y + + + I A C+QHE+DH NG++F DH++ Sbjct: 126 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 181 >gi|154486846|ref|ZP_02028253.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis L2-32] gi|154084709|gb|EDN83754.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis L2-32] Length = 141 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 7/137 (5%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 P L + S E D+ + ++ + + + +G+AA IGV R++ +D R Sbjct: 10 PFLSQPSAAAENTEEDL-AVAQDLKDTLDAHRNGCVGMAANMIGVPKRIIAFVDEDFGGR 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 V NP I F EGCLS+ R V R I V YMD + + G Sbjct: 69 I--FVMFNPHITAEDGAFDTA-EGCLSLQGERRTV-RYQRIEVDYMDRKFRERHAAFTGF 124 Query: 130 LATCLQHELDHLNGILF 146 A +QHE+DH +G++ Sbjct: 125 TAQIIQHEIDHCDGVII 141 >gi|227515637|ref|ZP_03945686.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] gi|227086067|gb|EEI21379.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] Length = 136 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + P+ +L++ +RP + L + ++ + + IG+AA IG ++ Sbjct: 1 MIYPI-NHDQQVLQQPARPATSAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + L + +NP+++ + + +EGCLS+ R+ R ITV Y D Sbjct: 57 AVSLGPVN-----VAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A +QHE DHL GIL Sbjct: 110 AQQELELTGLAAQAVQHECDHLRGILI 136 >gi|313890594|ref|ZP_07824222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] gi|313121111|gb|EFR44222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] Length = 136 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58 + + +V DP L+++S+ K + I ++ + + + +GLAA IG R+ Sbjct: 1 MIRQIVK--DPFFLQQISKQATKEDLPIGK---DLQDTLSFHREHCLGLAANMIGESKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++I + ++ NPK++ ++ + +E CLS+ + +R ITV Y+D N Sbjct: 56 IIISMGFVD-----ILMFNPKLVKKTNPYVT-EESCLSLSGNQ-KTQRYQKITVEYLDLN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + + +GL A QHELDHL+GIL Sbjct: 109 WRKKSLSLNGLAAQICQHELDHLDGILI 136 >gi|15672542|ref|NP_266716.1| peptide deformylase [Lactococcus lactis subsp. lactis Il1403] gi|281491026|ref|YP_003353006.1| peptide deformylase [Lactococcus lactis subsp. lactis KF147] gi|12723447|gb|AAK04658.1|AE006290_3 polypeptide deformylase [Lactococcus lactis subsp. lactis Il1403] gi|281374784|gb|ADA64304.1| Peptide deformylase [Lactococcus lactis subsp. lactis KF147] gi|326406061|gb|ADZ63132.1| peptide deformylase [Lactococcus lactis subsp. lactis CV56] Length = 211 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 29/176 (16%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ P LR V+ + ++ + + L + ML+ ++++ G+GLAA Q Sbjct: 21 DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 80 Query: 52 IGVLYRLVVI-------------DLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS 96 +G+L +++ + ++ K + N K+++ S D EGCLS Sbjct: 81 LGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 140 Query: 97 IP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + V R A +TV Y + + + I A C+QHE+DH NG++F DH++ Sbjct: 141 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 196 >gi|116511359|ref|YP_808575.1| peptide deformylase [Lactococcus lactis subsp. cremoris SK11] gi|125623399|ref|YP_001031882.1| peptide deformylase [Lactococcus lactis subsp. cremoris MG1363] gi|806487|gb|AAC41454.1| ORF211 [Lactococcus lactis subsp. cremoris] gi|116107013|gb|ABJ72153.1| N-formylmethionyl-tRNA deformylase [Lactococcus lactis subsp. cremoris SK11] gi|124492207|emb|CAL97136.1| putative membrane protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070146|gb|ADJ59546.1| peptide deformylase [Lactococcus lactis subsp. cremoris NZ9000] Length = 211 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 29/176 (16%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ P LR V+ + ++ + + L + ML+ ++++ G+GLAA Q Sbjct: 21 DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 80 Query: 52 IGVLYRLVVI-------------DLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS 96 +G+L +++ + ++ K + N K+++ S D EGCLS Sbjct: 81 LGLLKKVIAVLIPNEPEVDEEGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 140 Query: 97 IP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + V R A +TV Y + + + I A C+QHE+DH NG++F DH++ Sbjct: 141 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 196 >gi|301633662|gb|ADK87216.1| peptide deformylase [Mycoplasma pneumoniae FH] Length = 193 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 17/164 (10%) Query: 16 RVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIGVLYRLVVIDL 63 ++P++ ++ ++ I M+ + ++ GIG+AA QIG ++ I L Sbjct: 20 EPTKPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHL 79 Query: 64 QDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD-CNA 119 D ++ + INPKII S F EGCLS+P V R +IT+ D Sbjct: 80 MD-GGVEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQ 138 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + I A GL CLQHE DHL G + ++ L K+ Sbjct: 139 KEITITATGLFGMCLQHEFDHLQGRFYYHRINPLNPLFTNKEWK 182 >gi|293364031|ref|ZP_06610767.1| peptide deformylase [Mycoplasma alligatoris A21JP2] gi|292552521|gb|EFF41295.1| peptide deformylase [Mycoplasma alligatoris A21JP2] Length = 183 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 18/172 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML--------EVMYSTDGIGLAAVQ 51 M LV P +LR+ S + + + ++L + M+ E G+G+AAVQ Sbjct: 1 MFDVKLVKLPKKVLRQKSVNVSIPLIQEDIDLAEKMIYHIDDSQKENSKFRPGVGVAAVQ 60 Query: 52 IGVLYRLVVIDLQDHAHRKN--PMVFINPKIITFSDDFSV--YQEGCLSI----PDYRAD 103 G+L + + ++D + K V NPKII+ S+ + EGCLS+ P Sbjct: 61 YGILKNVFYVHVRDSVNNKEIFRDVLFNPKIISRSETKTALSEGEGCLSVHEDWPGQEGF 120 Query: 104 VKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 V R A + V + G +A QHELDHL G LFID +++ + Sbjct: 121 VHRDARVIVEAYSYFQKKVVTFDVFGYVAIVFQHELDHLQGNLFIDRINKKQ 172 >gi|294669088|ref|ZP_06734174.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309080|gb|EFE50323.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 91 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 39/88 (44%), Positives = 57/88 (64%) Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 +IT + + Y+EGCLS+P V R+ +TV +D + + ADGLLA C+QHELD Sbjct: 1 MITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALDEKGEKFTLEADGLLAICIQHELD 60 Query: 140 HLNGILFIDHLSRLKRDMITKKMSKLVQ 167 HL GI+F++HLS+LK+ I K+ K + Sbjct: 61 HLMGIVFVEHLSQLKQGRIKTKLKKRQK 88 >gi|261338163|ref|ZP_05966047.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] gi|270276799|gb|EFA22653.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] Length = 152 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + +RP + N + + + ++ + + + +G+AA IG ++V + Sbjct: 22 LAKPARPADPSNPEDLQIAQDLKDTLRAHSDGCVGMAANMIGEPVAIIVFVDDEMGGGI- 80 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +NP+I T + EGCLS+ RA V R+ +I V Y + + + +G A Sbjct: 81 -TTMLNPRITTAQQYYETA-EGCLSLDGERA-VTRAQYIEVDYDNTKGKPRHARFEGFTA 137 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH G + Sbjct: 138 QIIQHEVDHCLGKII 152 >gi|13358028|ref|NP_078302.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762059|ref|YP_001752550.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|23396555|sp|Q9PQ25|DEF_UREPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083081|sp|B1AJA6|DEF_UREP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|11357006|pir||F82886 polypeptide deformylase UU465 [imported] - Ureaplasma urealyticum gi|6899459|gb|AAF30877.1|AE002143_2 polypeptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827636|gb|ACA32898.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 198 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 18/179 (10%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P PILR V++ IE +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAF 109 G R I D A +++ + INP II S + + EGCLS+ D V R+ Sbjct: 81 GWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKK 139 Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + V+ D ++ I G++A C+QHE+ HL+ L+ D++++ + +K+ + Sbjct: 140 VHVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQQQPFYADPSWTKIGR 198 >gi|293400829|ref|ZP_06644974.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305855|gb|EFE47099.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 185 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 17/163 (10%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +V DPI+R S + ++ + L+ +ML+ + + +G+AA+Q+ Sbjct: 8 IVKDSDPIVREKSVTVPIPMHEEDKELLMDMLQYVRDSQDSELAEKQNLRPAVGIAAIQL 67 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADVKRSAF 109 G+ +++ + + NPKII+ S + EGCLS+ + + V R+A Sbjct: 68 GIPKKMLAVVVPKDEEEDYEFALANPKIISESIQKAYLKNGEGCLSVEEEHEGIVPRAAR 127 Query: 110 ITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I V+ D + +I A G LA LQHE+DH NG LF DH++ Sbjct: 128 IKVKGFDLLRNEEIVISASGYLAIVLQHEMDHFNGTLFYDHIN 170 >gi|284048313|ref|YP_003398652.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731] gi|283952534|gb|ADB47337.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731] Length = 136 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + + ++ D L++ S P ++ + ++LE + + + +G+AA IGV + Sbjct: 1 MIREIMR--DEYFLQQKSLPASPLDKPV---AIDLLETLKAHRDECVGMAANMIGVAKCI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V++L MV NP II + EGCLS+ R R I V + D + Sbjct: 56 IVVNLGLMD-----MVMFNPTIIKQEGPYETS-EGCLSLSGER-KTTRYRKIQVEFQDMD 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q + G A +QHE+DHL GIL Sbjct: 109 FKKQTLEFTGFPAQIIQHEVDHLAGILI 136 >gi|107025411|ref|YP_622922.1| aminotransferase, class IV [Burkholderia cenocepacia AU 1054] gi|105894785|gb|ABF77949.1| branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase [Burkholderia cenocepacia AU 1054] Length = 496 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 13/158 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M + ++ LR V+RP++ + + + + + L G G +AA QIG+ Sbjct: 1 MNTR-ILPVGTASLRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGI 59 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L P V +NP+I+ SD + C+ PD V+R A ++VRY Sbjct: 60 GQRMIALALDGW-----PDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRY 114 Query: 115 MDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLS 151 + + A ++ +QHE+DHL+G L D + Sbjct: 115 TTLDGEPHQRDALSPDVSELMQHEIDHLDGKLSFDRAT 152 >gi|317482099|ref|ZP_07941123.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|316916458|gb|EFV37856.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] Length = 139 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR S + +I+++++ + + +G+AA IGV R++V +D R Sbjct: 12 LRTPSEAAGPGDE---QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI- 67 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V +NP I T SD QEGCLS+ R R I V Y D + + G A Sbjct: 68 -TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRYRRIEVNYEDRRFRARHATFTGWTA 124 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 125 QIIQHEVDHCNGIII 139 >gi|227891784|ref|ZP_04009589.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] gi|227866443|gb|EEJ73864.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] Length = 136 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + + IL + S P K + + ++ ++++ + + +G+AA IG ++ Sbjct: 1 MIRDI-NHDVKILSKKSTPTSKND---IAIVQDLVDTLTYHRDHCVGMAANMIGKNKCII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + INP I S +S EGCLS+ R + R I V Y++ + Sbjct: 57 ACQFGPLI-----VAMINPVITKKSQKYSTS-EGCLSLTGER-ETTRFNKIEVSYLNQSF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q +G A +QHE+DH NGIL Sbjct: 110 QKVHATFEGFNAQIIQHEIDHCNGILI 136 >gi|37626213|gb|AAQ96588.1| hypothetical protein [Vibrio phage VP16C] Length = 137 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L ++ + D+ L+D M M + GIGLA Q+GVL R++V+ Sbjct: 11 LHAIAADVPH-GEDVTGLVDAMTAAMTAAGGIGLAGNQLGVLKRVIVVRAPKFKG----- 64 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 +NP I + +EGCLS P D KR ITV D + Q + A GL A C Sbjct: 65 CIVNPVITRHTSGHVNSREGCLSFPGKTVDKKRHNKITVEGFDAHWQPIKVEAKGLTAFC 124 Query: 134 LQHELDHLNGILF 146 +QHE+DHLNG+ Sbjct: 125 IQHEIDHLNGVTI 137 >gi|255525142|ref|ZP_05392086.1| formylmethionine deformylase [Clostridium carboxidivorans P7] gi|296188109|ref|ZP_06856501.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255511196|gb|EET87492.1| formylmethionine deformylase [Clostridium carboxidivorans P7] gi|296047235|gb|EFG86677.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 136 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + KP+V +L + S K + M ++D++++ + + + +GLA IGV R Sbjct: 1 MIKPIVK---DVLFLGQKSEKATKDD---MAVVDDLMDTLKANLQNCVGLAGNMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + + INP I+ + +E CLS+ R KR I V Y+D Sbjct: 55 ILVFTVANLI-----VPMINPVILKKEKPYET-EESCLSLIGVR-KTKRYEMIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q G A +QHE+DH GI+ Sbjct: 108 NFKSQKQVFTGFTAQIIQHEMDHFEGIII 136 >gi|171741144|ref|ZP_02916951.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC 27678] gi|283455486|ref|YP_003360050.1| peptide deformylase [Bifidobacterium dentium Bd1] gi|306823442|ref|ZP_07456817.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|309802744|ref|ZP_07696848.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] gi|171276758|gb|EDT44419.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC 27678] gi|283102120|gb|ADB09226.1| fms Peptide deformylase [Bifidobacterium dentium Bd1] gi|304553149|gb|EFM41061.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|308220808|gb|EFO77116.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] Length = 141 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 7/137 (5%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 P L + SR + + D + ++ + + + +G+AA IGV R++ +D R Sbjct: 10 PFLEQPSRDAQNTDEDF-AVAQDLKDTLDAHRNSCVGMAANMIGVSKRIIAFVDEDFGGR 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + NP+I F EGCLS+ R V R I V Y D + + G Sbjct: 69 I--FIMFNPEITARDGAFDTS-EGCLSLQGERHTV-RHQRIEVTYFDRKFRERHAAFTGF 124 Query: 130 LATCLQHELDHLNGILF 146 A +QHE+DH GI+ Sbjct: 125 TAQIIQHEVDHCAGIII 141 >gi|325690383|gb|EGD32387.1| peptide deformylase [Streptococcus sanguinis SK115] Length = 136 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L+++S + + + L ++ + + + + IGLAA IGV R+++ + Sbjct: 12 LQQLSERASRED---LYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P+V NP +++ S + +EGCLS+ R +R ITV Y+D + Q Q + GL A Sbjct: 64 PVVMFNPVLLSKSGPYKT-EEGCLSLVGSR-PTQRYQEITVDYLDKHWQQQTMTLKGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL G++ Sbjct: 122 QICQHELDHLEGVII 136 >gi|317057111|ref|YP_004105578.1| formylmethionine deformylase [Ruminococcus albus 7] gi|315449380|gb|ADU22944.1| formylmethionine deformylase [Ruminococcus albus 7] Length = 136 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57 + + +V + L++ S +K + DI I ++ + + + +G+AA IG R Sbjct: 1 MVREIV---HDVIFLKKKSIKADKNDVDI---ITDLRDTLKANHDRCVGMAANMIGFNKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ +V INP I+ + + +EGCLS+ R KR ITV Y D Sbjct: 55 IIIFTAGIMD-----IVMINPVIVKKAQPYET-EEGCLSLTGVR-KTKRWEKITVEYQDT 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 + + G +A +QHE DHL GI+ Sbjct: 108 SFNKKRGDFTGFVAQIIQHECDHLEGIII 136 >gi|320527454|ref|ZP_08028635.1| peptide deformylase [Solobacterium moorei F0204] gi|320132167|gb|EFW24716.1| peptide deformylase [Solobacterium moorei F0204] Length = 195 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 89/170 (52%), Gaps = 21/170 (12%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 ++ +P++R S + ++ + L+ +ML+ + + +G++A+Q+ Sbjct: 15 IIKDTNPLIREKSELVSLPLSKEDETLLRDMLQYVKDSTDEEKATKLNLRPAVGISAIQV 74 Query: 53 GVLYRLVVIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVK 105 G+ R+ + + N + + +NPKI++ S + + EGCLS+ + +R V Sbjct: 75 GIKKRMCAVAFDETDKDGNMVKYEFMLVNPKIVSRSVQPAYLESGEGCLSVENEHRGYVV 134 Query: 106 RSAFITVRYMDCNAQH-QIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 R+A +T+R D I A G +A LQHELDH++GILF DH+++ + Sbjct: 135 RNARVTIRAFDLVQNQDVEIRARGYIAIVLQHELDHMDGILFYDHINKKE 184 >gi|219130004|ref|XP_002185165.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP 1055/1] gi|217403344|gb|EEC43297.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP 1055/1] Length = 160 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 17/158 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +PDPILRR ++P++ + + S +GLAA Q GV R+V + + Sbjct: 3 RWPDPILRRPAQPVDAHWFGTGTLQKACALLRATSVSEKAVGLAAQQCGVDARIVYLQPE 62 Query: 65 DHAHRKNP-----------MVFINPKIITFSDDFSVY--QEGCLSIP-DYRADVKRSAFI 110 + N + INP+I+ S + V+ +E CL +P + A V R +++ Sbjct: 63 ERHPLINRRSFQRTAELSEITMINPQIVERSPELDVHSWREHCLVLPPTFDATVLRDSWV 122 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 T+ + D + + + G +A +QHELDH GIL D Sbjct: 123 TIVFRDIHGRPHSVRLRGEMARAVQHELDHDRGILITD 160 >gi|296454738|ref|YP_003661881.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum JDM301] gi|296184169|gb|ADH01051.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum JDM301] Length = 134 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 9/135 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR S + I ++++ + + +G+AA IGV R++V +D R Sbjct: 7 LRTPSEAAGPGDE---ATIQDLVDTLEANRSRCVGMAANMIGVSKRIIVFVDEDLGGRI- 62 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V +NP I T SD QEGCLS+ R R I V Y D + + G A Sbjct: 63 -TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRCRRIEVNYEDRRFRARHATFTGWTA 119 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 120 QIIQHEVDHCNGIII 134 >gi|227546595|ref|ZP_03976644.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212912|gb|EEI80791.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516343|emb|CBK69959.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. longum F8] Length = 134 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR S + +I+++++ + + +G+AA IGV R++V +D R Sbjct: 7 LRTPSEAAGPGDE---QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI- 62 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V +NP I T SD QEGCLS+ R R I V Y + + + G A Sbjct: 63 -TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRYRRIEVNYENRRFRARHATFAGWTA 119 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 120 QIIQHEVDHCNGIII 134 >gi|184155771|ref|YP_001844111.1| peptide deformylase [Lactobacillus fermentum IFO 3956] gi|183227115|dbj|BAG27631.1| polypeptide deformylase [Lactobacillus fermentum IFO 3956] Length = 136 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + P+ +L++ +RP + L + ++ + + IG+AA IG ++ Sbjct: 1 MIYPI-NHDQQVLQQPARPATSAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + L + +NP+++ + + +EGCLS+ R+ R ITV Y D Sbjct: 57 AVSLGPVN-----VAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + GL A +QHE DHL GIL Sbjct: 110 AQKELELTGLAAQAVQHECDHLRGILI 136 >gi|292557811|gb|ADE30812.1| Formylmethionine deformylase [Streptococcus suis GZ1] Length = 163 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L++ S P +++ + + + L +G+AA IGV R++++++ + Sbjct: 39 LQQKSEPATQLDVQVGQDLQDTLAANAHA-CVGMAANMIGVKKRIIIVNMGFTN-----L 92 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP +I+ + + +EGCLS+ R R I V + D + + + A Sbjct: 93 VMYNPVLISKAKPYQT-EEGCLSLEGTR-PTTRYQEIEVEFFDASWKKISLKLTDFQAQI 150 Query: 134 LQHELDHLNGILF 146 +QHELDHL GI+ Sbjct: 151 VQHELDHLEGIII 163 >gi|13507984|ref|NP_109933.1| peptide deformylase [Mycoplasma pneumoniae M129] gi|2499923|sp|P75527|DEF_MYCPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1674288|gb|AAB96235.1| polypeptide deformylase [Mycoplasma pneumoniae M129] Length = 216 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 17/164 (10%) Query: 16 RVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIGVLYRLVVIDL 63 ++P++ ++ ++ I M+ + ++ GIG+AA QIG ++ I L Sbjct: 43 EPTKPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHL 102 Query: 64 QDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD-CNA 119 D ++ + INPKII S F EGCLS+P V R +IT+ D Sbjct: 103 MD-GGVEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQ 161 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + I A GL CLQHE DHL G + ++ L K+ Sbjct: 162 KEITITATGLFGMCLQHEFDHLQGRFYYHRINPLNPLFTNKEWK 205 >gi|322411580|gb|EFY02488.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 136 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +V L++ S+ K + I + + L +GLAA IG R+++I Sbjct: 1 MIREIVT-DTFFLQQKSKAATKEDLWIGQALQDTLSFHRDH-CLGLAANMIGEQKRVIII 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +V NP I++ + + +E CLS+ R KR ITV Y+D N + Sbjct: 59 SMGFVD-----LVMFNPVIVSKREAYET-EESCLSLTGSR-QTKRYTSITVEYVDLNWRP 111 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 112 KRLRLSGLPAQICQHELDHLEGILI 136 >gi|300854809|ref|YP_003779793.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300434924|gb|ADK14691.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 136 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + KP+V +L + S K + M + D++++ + + + +GLA IGV R Sbjct: 1 MIKPIVK---DVLFLGQKSEEATKKD---MAVADDLMDTLRANLQNCVGLAGNMIGVRKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + + INP I+ + +E CLS+ R KR I V Y+D Sbjct: 55 ILVFTVGNLI-----VPMINPVILKKEKPYET-EESCLSLIGVR-KTKRYEMIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N ++Q G A +QHE+DH GI+ Sbjct: 108 NFKNQKQVFTGFTAQIIQHEMDHFEGIII 136 >gi|164687438|ref|ZP_02211466.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM 16795] gi|164603212|gb|EDQ96677.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM 16795] Length = 137 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 11/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P + I + ++++ + + +GLAA IG R++V + Sbjct: 12 LEQKSEPATIQDKSI---VTDLVDTLKANLDGCVGLAANMIGFKKRILVFTV----GAGM 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + INP I+ + +E CLS+ +R R I V+++D N + + G +A Sbjct: 65 IVPMINPVILKKEKPYLT-EESCLSLEGFR-QTTRYETIEVKFLDANFKEKTQVFTGFVA 122 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH GI+ Sbjct: 123 QIIQHEMDHFEGIII 137 >gi|170737315|ref|YP_001778575.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3] gi|169819503|gb|ACA94085.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3] Length = 496 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 13/156 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIG--LAAVQIGV 54 M + ++ LR V+RP++ + + + + + L G G +AA QIG+ Sbjct: 1 MNTR-ILPVGTASLRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGI 59 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L P V +NP+I+ SD + C+ PD V+R A ++VRY Sbjct: 60 GQRMIALALDGW-----PDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRY 114 Query: 115 MDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDH 149 + + A ++ +QHE+DHL+G L D Sbjct: 115 TTLDGEPHQRDALSPDVSELMQHEIDHLDGKLSFDR 150 >gi|251782236|ref|YP_002996538.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390865|dbj|BAH81324.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127088|gb|ADX24385.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 136 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +V L++ S+ K + I + + L +GLAA IG R+++I Sbjct: 1 MIREIVT-DTFFLQQKSKAATKEDLWIGQALQDTLSFHRDH-CLGLAANMIGEQKRVIII 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +V NP +++ + + +E CLS+ R KR ITV Y+D N + Sbjct: 59 SMGFVD-----LVMFNPVMVSKKEAYET-EESCLSLTGSR-QTKRYTSITVEYVDLNWRP 111 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 112 KRLRLSGLPAQICQHELDHLEGILI 136 >gi|306831575|ref|ZP_07464733.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426360|gb|EFM29474.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 136 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S K + + L ++ + + + + +G+AA IGV R +++++ Sbjct: 12 LAQKSEEATKED---LYLAQDLQDTLVANRDNCVGMAANMIGVKKRAIIVNMGGAD---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP ++ S F +E CLS+ R +R I V ++D N Q + GL A Sbjct: 65 -LVMFNPVLLNKSLPFDT-KESCLSLTGAR-PTRRYQRIEVSFLDKNWNQQTLTLTGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GI+ Sbjct: 122 QICQHELDHLEGIII 136 >gi|239621599|ref|ZP_04664630.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515474|gb|EEQ55341.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 141 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 7/137 (5%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 P L + S E +D+ + ++ + + + +G+AA IGV R++ +D R Sbjct: 10 PFLSQPSVEAENTEADL-AVAQDLKDTLDAHRNGCVGMAANMIGVPKRIIAFVDEDLGGR 68 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 V NP I + EGCLS+ R + R I V Y D + + G Sbjct: 69 I--TVMFNPHITAQDGAYDAS-EGCLSLNGERHTL-RYQRIEVTYEDRRFRERHATFTGF 124 Query: 130 LATCLQHELDHLNGILF 146 A +QHE+DH +G++ Sbjct: 125 TAQIIQHEIDHCDGVII 141 >gi|322377869|ref|ZP_08052358.1| peptide deformylase [Streptococcus sp. M334] gi|321281292|gb|EFX58303.1| peptide deformylase [Streptococcus sp. M334] Length = 136 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS+ + + + L ++ + + + +GLAA IGV +++ Sbjct: 6 VKDILF-----LSQVSQSASQED---LYLARDLQDTLLANRETCVGLAANMIGVQKCVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP ++++ + +EGCLS+ R KR I V Y D Q Sbjct: 58 FNLG-----LVPVVMFNPVLLSYEGLYET-EEGCLSLTGVR-PTKRYETIRVAYRDSKWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q + G A QHELDHL G + Sbjct: 111 EQTMILTGFPAQICQHELDHLEGRII 136 >gi|209554070|ref|YP_002284901.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541571|gb|ACI59800.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 198 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 18/163 (11%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P P+LR V++ I+ +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAF 109 G R I D + + INP I S + EGCLS+ D V R Sbjct: 81 GWNKRATYIHFDDGNEEYH-YLLINPHITKRSSQRAYLNPGEGCLSVDHDRSGYVIRYEK 139 Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 + V+ D ++ I G++A C+QHE+ HL+ L+ D+++ Sbjct: 140 VHVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNIN 182 >gi|171920852|ref|ZP_02932018.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178960|ref|ZP_02964717.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024017|ref|ZP_02996776.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518292|ref|ZP_03003815.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524344|ref|ZP_03004376.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867842|ref|ZP_03079842.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273805|ref|ZP_03206339.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550531|ref|ZP_03771480.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551646|ref|ZP_03772592.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903056|gb|EDT49345.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209237|gb|EDU06280.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019044|gb|EDU57084.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998001|gb|EDU67098.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659819|gb|EDX53199.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660539|gb|EDX53796.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249560|gb|EDY74342.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379461|gb|EEH01826.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379685|gb|EEH02047.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 198 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 18/163 (11%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P P+LR V++ I+ +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAF 109 G R I D + ++ + INP I S + EGCLS+ D V R Sbjct: 81 GWNKRATYIHFDD-GNEEHHYLLINPHITKRSSQRAYLNPGEGCLSVDHDRSGYVIRYEK 139 Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 + V+ D ++ I G++A C+QHE+ HL+ L+ D+++ Sbjct: 140 VHVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNIN 182 >gi|160914591|ref|ZP_02076805.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991] gi|158433131|gb|EDP11420.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991] Length = 139 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 9/135 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L+ S P K + + D++L+ + + +G+AA IGV ++ ++ + Sbjct: 12 LQMKSLPATKED---KGIADDLLDTLKANAMQCVGMAANMIGVQKCIIAFLNKESGQYE- 67 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V +NP II S EGCLS+ R + KR I V+Y D + + +I G A Sbjct: 68 --VMLNPVIIKTSGIAYRVMEGCLSLAGER-EAKRYPQIKVQYYDTDMKLKIKSYKGFTA 124 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH NGIL Sbjct: 125 QIIQHEIDHCNGILI 139 >gi|313900498|ref|ZP_07833991.1| peptide deformylase [Clostridium sp. HGF2] gi|312954560|gb|EFR36235.1| peptide deformylase [Clostridium sp. HGF2] Length = 137 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + K +V D L SR E D + + ++ + + ++ +G+AA IGVL R++ Sbjct: 1 MIKEIVK--DTFLL--SRRCEAATLDDLQTVQDLQDTLQAHADHCVGMAANMIGVLKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + +NP II D +EGCL + R I V YMDC Sbjct: 57 VFQDGGSY-----VSMLNPVIIKTGDKRYTAEEGCLC-HSTQKKALRYEKIKVSYMDCCG 110 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + +I +G A +QHELDH +GIL Sbjct: 111 KKKIKTYEGFCAQIIQHELDHCDGILI 137 >gi|254456880|ref|ZP_05070308.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] gi|207085672|gb|EDZ62956.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] Length = 267 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 6/162 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K + +P + N ++ LI ++ + + LAA QIG ++V+ Sbjct: 1 MVKEITKYPTKPSLEFGANVRFFNDELFALIQDLKDTIEVNSLDALAAFQIGSPLSVIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + INP+++ E P A KR IT+ Y D +A Sbjct: 61 -----KKGGEFLELINPRVLKREGSVEPV-ETTAYFPGMSAKTKRYEKITLMYEDRDATQ 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + ADG LA LQ ++D+ G F L + ++ + K+ Sbjct: 115 KFLEADGELAITLQRKVDYTFGSHFRFRLDKDEQKLFDSKLE 156 >gi|227889181|ref|ZP_04006986.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] gi|227850410|gb|EEJ60496.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] Length = 137 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 M K L+I + L+ S P K + + ++ + + + GLAA IGV R+ Sbjct: 1 MAVK-LIIHDELSLKFKSLPATKQD---LGAATDLKDTLLANKYRAAGLAANMIGVQKRI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + + P+V +NP I+ D + Y EGCLS+ R +R ITV+Y + N Sbjct: 57 IALFIGPL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGER-PTERYKNITVKYQNEN 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH NGIL Sbjct: 110 LETRQQSFSDFTAEVIQHEVDHCNGILI 137 >gi|253751244|ref|YP_003024385.1| peptide deformylase [Streptococcus suis SC84] gi|253753145|ref|YP_003026285.1| peptide deformylase [Streptococcus suis P1/7] gi|253754968|ref|YP_003028108.1| peptide deformylase [Streptococcus suis BM407] gi|251815533|emb|CAZ51115.1| peptide deformylase [Streptococcus suis SC84] gi|251817432|emb|CAZ55172.1| peptide deformylase [Streptococcus suis BM407] gi|251819390|emb|CAR44821.1| peptide deformylase [Streptococcus suis P1/7] gi|319757521|gb|ADV69463.1| peptide deformylase [Streptococcus suis JS14] Length = 136 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L++ S P +++ + + + L +G+AA IGV R++++++ + Sbjct: 12 LQQKSEPATQLDVQVGQDLQDTLAANAHA-CVGMAANMIGVKKRIIIVNMGFTN-----L 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP +I+ + + +EGCLS+ R R I V + D + + + A Sbjct: 66 VMYNPVLISKAKPYQT-EEGCLSLEGTR-PTTRYQEIEVEFFDASWKKISLKLTDFQAQI 123 Query: 134 LQHELDHLNGILF 146 +QHELDHL GI+ Sbjct: 124 VQHELDHLEGIII 136 >gi|283768843|ref|ZP_06341754.1| peptide deformylase [Bulleidia extructa W1219] gi|283104629|gb|EFC06002.1| peptide deformylase [Bulleidia extructa W1219] Length = 188 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 21/168 (12%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +V +PI+R S+ ++ ++ + +L+ +ML+ + + +G++A+Q+ Sbjct: 8 IVKDNNPIIRTKSKEVKLPLSEEDASLLRDMLKYVQDSTDEEKAKKYNLRPAVGISAIQV 67 Query: 53 GVLYRLVVIDLQDHAHRKNPMV----FINPKIITFS--DDFSVYQEGCLSI-PDYRADVK 105 G+ R++ + + D NP+ N KI++ S + EGCLS+ D+ V Sbjct: 68 GIPKRMMAVVVDDIDKNGNPIHYEYMLANAKIVSESAQPAYLSSGEGCLSVVQDHPGYVI 127 Query: 106 RSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A +TV D I A G LA LQHELDH +G LF D + + Sbjct: 128 RKARVTVEAYDLITDSMVSIRARGYLAIVLQHELDHFDGHLFYDRIDK 175 >gi|94994165|ref|YP_602263.1| peptide deformylase [Streptococcus pyogenes MGAS10750] gi|94547673|gb|ABF37719.1| Peptide deformylase [Streptococcus pyogenes MGAS10750] Length = 136 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + ++ +L++ ++ +K + I ++ + + Y + +G+AA IG R+V Sbjct: 1 MIREIIT-DHFLLKQKAQVAKKEDLWIGQ---DLQDTLAFYRQECLGMAANMIGEQKRIV 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + +V NP +++ + +E CLS+ YR +R ITV Y+D N Sbjct: 57 IVSMGFID-----LVMFNPVMVSKKGIYQT-KESCLSLSGYR-KTQRYDKITVEYLDHNW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + + GL A QHELDHL GIL Sbjct: 110 RPKRLNLTGLTAQICQHELDHLEGILI 136 >gi|23466247|ref|NP_696850.1| peptide deformylase [Bifidobacterium longum NCC2705] gi|189440729|ref|YP_001955810.1| peptide deformylase [Bifidobacterium longum DJO10A] gi|322689813|ref|YP_004209547.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] gi|322691751|ref|YP_004221321.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|23326994|gb|AAN25486.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189429164|gb|ACD99312.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|320456607|dbj|BAJ67229.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320461149|dbj|BAJ71769.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] Length = 139 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR S + +I+++++ + + +G+AA IGV R++V +D R Sbjct: 12 LRTPSEAAGPGDE---QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI- 67 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V +NP I T SD QEGCLS+ R R I V Y + + + G A Sbjct: 68 -TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRYRRIEVNYENRRFRARHATFAGWTA 124 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 125 QIIQHEVDHCNGIII 139 >gi|185179123|ref|ZP_02555609.2| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024050|ref|ZP_02569693.2| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518296|ref|ZP_02556113.2| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195867564|ref|ZP_03079567.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225551606|ref|ZP_03772552.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184208960|gb|EDU06003.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019083|gb|EDU57123.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998245|gb|EDU67342.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660808|gb|EDX54062.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225379421|gb|EEH01786.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 198 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 18/179 (10%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P PILR V++ IE +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAF 109 G R I D A +++ + INP II S + + EGCLS+ D V R+ Sbjct: 81 GWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKK 139 Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + V+ D ++ I G++A C+QHE+ HL+ L+ D++++ + +K+ + Sbjct: 140 VHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQQQPFYAEPSWTKIGR 198 >gi|229826625|ref|ZP_04452694.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC 49176] gi|229789495|gb|EEP25609.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC 49176] Length = 138 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 10/135 (7%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR S P+ K + M +++++ + + Y+ + +G++A IG+ ++ I ++ Sbjct: 12 LRLKSEPVTKDD---MAVVEDLKDTLKAYADECVGMSANMIGINKAVIAIQPENSDVM-- 66 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V +NPKII S + +EGC+ + R V R IT+ Y D + + I G +A Sbjct: 67 -TVMLNPKIIKKSGAYET-EEGCMCLEGERKAV-RHRNITLEYFDEDFKKHIKLYSGYIA 123 Query: 132 TCLQHELDHLNGILF 146 ++HE DHL GI+ Sbjct: 124 EIIEHECDHLEGIII 138 >gi|223932640|ref|ZP_03624640.1| formylmethionine deformylase [Streptococcus suis 89/1591] gi|330832215|ref|YP_004401040.1| peptide deformylase [Streptococcus suis ST3] gi|223898750|gb|EEF65111.1| formylmethionine deformylase [Streptococcus suis 89/1591] gi|329306438|gb|AEB80854.1| peptide deformylase [Streptococcus suis ST3] Length = 136 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L++ S P +++ + ++ + + + +G+AA IG+ R++++++ Sbjct: 12 LQQKSEPATQLDVQVGQ---DLQDTLSANAHACVGMAANMIGIKKRIIIVNMGFTN---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP +I+ + + +EGCLS+ R R I V ++D + + + A Sbjct: 65 -LVMYNPVLISKAKPYQT-EEGCLSLEGTR-PTTRYQEIEVEFLDASWKKISLKLTDFQA 121 Query: 132 TCLQHELDHLNGILF 146 +QHELDHL GI+ Sbjct: 122 QIVQHELDHLEGIII 136 >gi|256852171|ref|ZP_05557557.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260661796|ref|ZP_05862707.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|282933528|ref|ZP_06338899.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|256615217|gb|EEU20408.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260547543|gb|EEX23522.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|281302342|gb|EFA94573.1| peptide deformylase [Lactobacillus jensenii 208-1] Length = 136 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59 + K ++ + L+R S P K + I ++ + + + +G+AA IG R++ Sbjct: 1 MIKEIIK-DEMFLKRKSLPATKADLSIGR---DLRDTLQANKERCVGMAANMIGYSKRVI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++++ +V NP I+ + + V EGCLS+ R + R + V + D Sbjct: 57 IVNIGFFD-----VVMFNPVILERKNPYQVS-EGCLSLSGSR-NTLRFKEVKVAFFDEKW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q + G A QHE+DHL GIL Sbjct: 110 EKQELTLTGFAAEICQHEMDHLEGILI 136 >gi|213691471|ref|YP_002322057.1| formylmethionine deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522932|gb|ACJ51679.1| formylmethionine deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457544|dbj|BAJ68165.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 139 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR S + + +I+++++ + + +G+AA IGV R++V +D R Sbjct: 12 LRTPSE-VAGPGDE--QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI- 67 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V NP I T SD QEGCLS+ R R I V Y D + + G A Sbjct: 68 -TVMFNPVI-TASDGAFDAQEGCLSLTGER-RTLRYRRIEVNYEDRRFRARHATFAGWTA 124 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 125 QIIQHEVDHCNGIII 139 >gi|325679773|ref|ZP_08159347.1| peptide deformylase [Ruminococcus albus 8] gi|324108588|gb|EGC02830.1| peptide deformylase [Ruminococcus albus 8] Length = 136 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + K +V D I L++ S K ++ M +I ++ + + + +G+AA IG R+ Sbjct: 1 MVKEIVK--DIIFLKKKSV---KADTKDMQIITDLQDTLKANHDRCVGMAANMIGYSKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ +V INP I+ + + +EGCLS+ R KR ITV Y+D + Sbjct: 56 IIFTAGIMD-----IVMINPVIVKKARPYET-EEGCLSLTGVR-KTKRWEMITVEYLDTS 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + G +A +QHE DHL+GI+ Sbjct: 109 FKKKRGDFTGFVAQIIQHECDHLDGIII 136 >gi|288905492|ref|YP_003430714.1| polypeptide deformylase [Streptococcus gallolyticus UCN34] gi|288732218|emb|CBI13783.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34] Length = 136 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S K + + L ++ + + + + +G+AA IGV R++++++ Sbjct: 12 LAQKSEEATKED---LYLAQDLQDTLVANRDNCVGMAANMIGVKKRVIIVNMGVAD---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP ++ S F +E CLS+ R +R I V ++D N Q + GL A Sbjct: 65 -LVMFNPVLLNKSLPFDT-KESCLSLTGAR-PTRRYQKIEVSFLDKNWNQQTLTLTGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GI+ Sbjct: 122 QICQHELDHLEGIII 136 >gi|169350971|ref|ZP_02867909.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552] gi|169292033|gb|EDS74166.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552] Length = 136 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 15/147 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + K +V D + L + S K + + +++++L+ + + +G+AA IG ++ Sbjct: 1 MIKKIVK--DKLFLSQKSSLASKED---LYIVEDLLDTIKANKDKCVGMAANMIGYNKQI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +VI+ D +V INP I + + EGCL + R ITV Y+D N Sbjct: 56 IVIENND-----EYLVMINPSITKTTGKYET-NEGCLCHETLMPAL-RYHKITVEYLDLN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGIL 145 + + A +QHE+DH NGIL Sbjct: 109 FKKKTRTFKDYSAQIIQHEIDHCNGIL 135 >gi|228477893|ref|ZP_04062507.1| polypeptide deformylase [Streptococcus salivarius SK126] gi|228250383|gb|EEK09623.1| polypeptide deformylase [Streptococcus salivarius SK126] Length = 136 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L + S K + + + + LE +G+AA IGV R++++++ + Sbjct: 12 LGQKSTEATKEDLYLAKDLRDTLEFHKDA-CLGMAANMIGVKKRVIIVNIGFVN-----L 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP +++ S F +E CLS+ R KR I V Y+D + + G+ A Sbjct: 66 VMFNPILVSKSSPFQT-EESCLSLEGSR-PTKRYESIEVAYLDEQWMPKQLSFSGMPAQI 123 Query: 134 LQHELDHLNGILF 146 +QHELDHL GI+ Sbjct: 124 IQHELDHLEGIII 136 >gi|313678726|ref|YP_004056466.1| peptide deformylase [Mycoplasma bovis PG45] gi|312950135|gb|ADR24730.1| peptide deformylase [Mycoplasma bovis PG45] Length = 186 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 20/168 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVL 55 LV P +LR+ S + ++++ + L + M+ + + G+G+AAVQ GVL Sbjct: 7 ELVKLPKKVLRQKSVNVPIPLSNEDIELAEKMIYHIDDSQKEGSKFQAGVGVAAVQYGVL 66 Query: 56 YRLVVIDLQDHAHRKNPM----VFINPKIITFSDDFSVY--QEGCLS----IPDYRADVK 105 R+ I++ + VF NP +I S+ EGCLS I + V Sbjct: 67 KRVFYINVTEDMVDDKKYALRDVFFNPVVIAKSESKIALSQGEGCLSVGRNIKNQSGAVY 126 Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152 R I + + Y A QHELDHL+G LFID + Sbjct: 127 RHKRIVIEAYSYFEKKVKRYDLKDYPAIVAQHELDHLDGKLFIDRIDP 174 >gi|94988363|ref|YP_596464.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94992245|ref|YP_600344.1| peptide deformylase [Streptococcus pyogenes MGAS2096] gi|94541871|gb|ABF31920.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94545753|gb|ABF35800.1| Peptide deformylase [Streptococcus pyogenes MGAS2096] Length = 136 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + ++ +L++ ++ +K + I ++ + + Y + +G+AA IG R+V Sbjct: 1 MIREIIT-DHFLLQQKAQVAKKEDLWIGQ---DLQDTLAFYRQECLGMAANMIGEQKRIV 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + +V NP +++ + +E CLS+ YR +R ITV Y+D N Sbjct: 57 IVSMGFID-----LVMFNPVMVSKKGIYQT-KESCLSLSGYR-KTQRYDKITVEYLDHNW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + + GL A QHELDHL GIL Sbjct: 110 RPKRLNLTGLTAQICQHELDHLEGILI 136 >gi|56808912|ref|ZP_00366621.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes M49 591] gi|209559224|ref|YP_002285696.1| peptide deformylase [Streptococcus pyogenes NZ131] gi|209540425|gb|ACI61001.1| Peptide deformylase [Streptococcus pyogenes NZ131] Length = 136 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + ++ +L++ ++ +K + I ++ + + Y + G+AA IG R+V Sbjct: 1 MIREIIT-DHFLLQQKAQVAKKEDLWIGQ---DLQDTLAFYRQECFGMAANMIGEQKRIV 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + +V NP +++ + +E CLS+ YR +R ITV Y+D N Sbjct: 57 IVSMGFID-----LVMFNPVMVSKKGIYQT-KESCLSLSGYR-KTQRYDKITVEYLDHNW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + + GL A QHELDHL GIL Sbjct: 110 RPKRLSLTGLTAQICQHELDHLEGILI 136 >gi|15674896|ref|NP_269070.1| peptide deformylase [Streptococcus pyogenes M1 GAS] gi|21910126|ref|NP_664394.1| peptide deformylase [Streptococcus pyogenes MGAS315] gi|28896175|ref|NP_802525.1| peptide deformylase [Streptococcus pyogenes SSI-1] gi|50914040|ref|YP_060012.1| peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71903322|ref|YP_280125.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71910490|ref|YP_282040.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94990244|ref|YP_598344.1| peptide deformylase [Streptococcus pyogenes MGAS10270] gi|139473964|ref|YP_001128680.1| peptide deformylase [Streptococcus pyogenes str. Manfredo] gi|306827532|ref|ZP_07460815.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] gi|13622035|gb|AAK33791.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS] gi|21904318|gb|AAM79197.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315] gi|28811426|dbj|BAC64358.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1] gi|50903114|gb|AAT86829.1| Peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71802417|gb|AAX71770.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71853272|gb|AAZ51295.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94543752|gb|ABF33800.1| Peptide deformylase [Streptococcus pyogenes MGAS10270] gi|134272211|emb|CAM30457.1| peptide deformylase [Streptococcus pyogenes str. Manfredo] gi|304430330|gb|EFM33356.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] Length = 136 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + ++ +L++ ++ +K + I ++ + + Y + +G+AA IG R+V Sbjct: 1 MIREIIT-DHFLLQQKAQVAKKEDLWIGQ---DLQDTLAFYRQECLGMAANMIGEQKRIV 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + +V NP +++ + +E CLS+ YR +R ITV Y+D N Sbjct: 57 IVSMGFID-----LVMFNPVMVSKKGIYQT-KESCLSLSGYR-KTQRYDKITVEYLDHNW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + + GL A QHELDHL GIL Sbjct: 110 RPKRLSLTGLTAQICQHELDHLEGILI 136 >gi|153206215|ref|ZP_01945478.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177'] gi|165919286|ref|ZP_02219372.1| peptide deformylase [Coxiella burnetii RSA 334] gi|120577345|gb|EAX33969.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177'] gi|165917009|gb|EDR35613.1| peptide deformylase [Coxiella burnetii RSA 334] Length = 209 Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 13/152 (8%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI-----DLQD 65 +L +V+ +E + I+ M S G G AA Q+G+ R++++ D Sbjct: 13 VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH---- 121 P + +NP SD EGCLS+P V+R + + ++ Sbjct: 73 AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132 Query: 122 --QIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Y + QHE+DHL G +++D Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164 >gi|307299459|ref|ZP_07579259.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2] gi|306914858|gb|EFN45245.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2] Length = 183 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 12/171 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-----IMNLIDNMLEVMYSTD-GIGLAAVQIGV 54 M+ +++ +P+LR S P+ S I+ L + E G G++A QIG+ Sbjct: 1 MMTCEVLLLGNPLLRETSSPVSDFRSQETIGQIVMLKQALDEFRKENGFGRGISAPQIGI 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 L R+V ++L + V NP+I+ S + C+S P ++RS + V Y Sbjct: 61 LKRIVALNLG-----QGSFVIANPRIVDRSRATFTMWDDCMSFPHLLIRLERSLSVDVVY 115 Query: 115 MDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D D + LQHE+DHL+GIL IDH K + + + Sbjct: 116 EDERGIEYEWKGVDQARSELLQHEIDHLDGILAIDHALDAKSIIYRSEYER 166 >gi|19745939|ref|NP_607075.1| peptide deformylase [Streptococcus pyogenes MGAS8232] gi|19748096|gb|AAL97574.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232] Length = 136 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + ++ +L++ ++ +K + I ++ + + Y + +G+AA IG R+V Sbjct: 1 MIREIIT-DHFLLQQKAQVAKKEDLWIGQ---DLQDTLVFYRQECLGMAANMIGEQKRIV 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + +V NP +++ + +E CLS+ YR +R ITV Y+D N Sbjct: 57 IVSMGFID-----LVMFNPVMVSKKGIYQT-KESCLSLSGYR-KTQRYDKITVEYLDHNW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + + GL A QHELDHL GIL Sbjct: 110 RPKRLSLTGLTAQICQHELDHLEGILI 136 >gi|297205664|ref|ZP_06923060.1| peptide deformylase [Lactobacillus jensenii JV-V16] gi|297150242|gb|EFH30539.1| peptide deformylase [Lactobacillus jensenii JV-V16] Length = 136 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59 + K ++ + L+R S P K + I ++ + + + +G+AA IG R++ Sbjct: 1 MIKEIIK-DEMFLKRKSLPATKADLSIGR---DLRDTLQANKERCVGMAANMIGYSKRVI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++++ +V NP I+ + + V EGCLS+ R + R + V + D Sbjct: 57 IVNIGFFD-----VVMFNPVILERKNPYQVS-EGCLSLSGSR-NTLRFKEVKVAFFDEKW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 ++Q + G A QHE+DHL GIL Sbjct: 110 ENQELTLTGFAAEICQHEMDHLEGILI 136 >gi|309775748|ref|ZP_07670744.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] gi|308916511|gb|EFP62255.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] Length = 184 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 18/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V D I+R S ++ + ++ L+ +ML + + +G+AA+Q Sbjct: 7 DIVKDTDAIVRTKSEVVKLPLTAEDEALLMDMLSYVRDSQDAELAEANNLRPAVGIAAIQ 66 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI-PDYRADVKRSA 108 +GV R++ + + + + +NP+II+ S + EGCLS+ ++ V R+A Sbjct: 67 LGVAKRMLAVVVP-NDEDIDEYALVNPRIISESVQRAYLKNGEGCLSVEKEHEGIVPRAA 125 Query: 109 FITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV+ D Q I A LA LQHE+DH +G LF D +++ Sbjct: 126 RITVKGYDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170 >gi|88606748|ref|YP_505874.1| peptide deformylase, truncation [Anaplasma phagocytophilum HZ] gi|88597811|gb|ABD43281.1| peptide deformylase, truncated [Anaplasma phagocytophilum HZ] Length = 91 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 40/85 (47%), Positives = 58/85 (68%) Query: 84 SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 S D +EGCLS+P+ R V R + ++Y D + + +I+ A GLL+ CLQHE+DHLNG Sbjct: 4 SFDLVSMEEGCLSVPNQRELVVRPERVVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNG 63 Query: 144 ILFIDHLSRLKRDMITKKMSKLVQL 168 +FI H+S+LKRD++ +KM K L Sbjct: 64 TVFIKHISKLKRDLVMQKMRKAASL 88 >gi|239621615|ref|ZP_04664646.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515490|gb|EEQ55357.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 128 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 9/134 (6%) Query: 15 RRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 R S + +I+++++ + + +G+AA IGV R++V +D R Sbjct: 2 RTPSEAAGPGDE---QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI-- 56 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 V +NP I T SD QEGCLS+ R R I V Y D + + G A Sbjct: 57 TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRYRRIEVNYEDRRFRARHATFTGWTAQ 114 Query: 133 CLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 115 IIQHEVDHCNGIII 128 >gi|304385668|ref|ZP_07368012.1| peptide deformylase [Pediococcus acidilactici DSM 20284] gi|304328172|gb|EFL95394.1| peptide deformylase [Pediococcus acidilactici DSM 20284] Length = 136 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 10/134 (7%) Query: 14 LRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 L + S P + + ++L+D + + +GLAA IGV +++ + + Sbjct: 12 LSQKSVPATRADLPTALDLVDTLAA--NADRAVGLAANMIGVKKQIIAVSIGVMN----- 64 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + +NPK+ S + +EGCLS+ R+ R I V+Y D N + Q + G +A Sbjct: 65 IAMLNPKLTKKSHPYQA-KEGCLSLTGERS-TTRYKEIEVQYQDLNFKKQTQHFSGWIAE 122 Query: 133 CLQHELDHLNGILF 146 +QHE+DH GIL Sbjct: 123 IIQHEIDHCAGILI 136 >gi|325978482|ref|YP_004288198.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178410|emb|CBZ48454.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 136 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S K + + L ++ + + + + +G+AA IGV R +++++ Sbjct: 12 LAQKSEEATKED---LYLAQDLQDTLVANRDNCVGMAANMIGVKKRAIIVNMGVAD---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP ++ S F +E CLS+ R +R I V ++D N Q + GL A Sbjct: 65 -LVMFNPVLLNKSLPFDT-KESCLSLTGAR-PTRRYQRIEVSFLDKNWNQQTLTLTGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GI+ Sbjct: 122 QICQHELDHLEGIII 136 >gi|209363680|ref|YP_001423542.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|212217854|ref|YP_002304641.1| peptide deformylase [Coxiella burnetii CbuK_Q154] gi|207081613|gb|ABS76532.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|212012116|gb|ACJ19496.1| peptide deformylase [Coxiella burnetii CbuK_Q154] Length = 213 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 13/152 (8%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI-----DLQD 65 +L +V+ +E + I+ M S G G AA Q+G+ R++++ D Sbjct: 17 VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 76 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH---- 121 P + +NP SD EGCLS+P V+R + + ++ Sbjct: 77 AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 136 Query: 122 --QIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Y + QHE+DHL G +++D Sbjct: 137 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 168 >gi|209554459|ref|YP_002284908.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541960|gb|ACI60189.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 198 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 18/163 (11%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P PILR V++ IE +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAF 109 G R I D A +++ + INP II S + + EGCLS+ D V R+ Sbjct: 81 GWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKK 139 Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 + V+ D ++ I G++A C+QHE+ HL+ L+ D+++ Sbjct: 140 VHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182 >gi|116335077|ref|YP_802572.1| peptide deformylase [Candidatus Carsonella ruddii PV] gi|116235358|dbj|BAF35206.1| peptide deformylase [Candidatus Carsonella ruddii PV] Length = 154 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 84/145 (57%), Gaps = 3/145 (2%) Query: 6 LVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ F D +R + ++ N +I+ +I M+ +MY +GIG+++ QI +++ D+ Sbjct: 4 ILNFKDKRIRLFFKNVKVSFNYNILYIIKQMIILMYKNNGIGISSNQINCFKNIIICDVN 63 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +K P++ INPKI+ + + ++ EGCLSI ++ V R + ++Y + + + Sbjct: 64 --FKKKKPLIMINPKILINNKNHTLGMEGCLSIKNFLISVLRFDKVYIKYFNIYNKKKKK 121 Query: 125 YADGLLATCLQHELDHLNGILFIDH 149 +G+ + C+QHE+DHLN L +D+ Sbjct: 122 IFNGIKSRCIQHEIDHLNSKLILDY 146 >gi|322517336|ref|ZP_08070211.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] gi|322124033|gb|EFX95586.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] Length = 136 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L + S K + + + + LE +G+AA IGV R++++++ + Sbjct: 12 LGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVIIVNIGFVN-----L 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP +++ S F +E CLS+ R +R I V Y+D + + G+ A Sbjct: 66 VMFNPVLVSKSSPFQT-EESCLSLEGSR-PTRRYESIEVAYLDEQWMLKQLNFSGMPAQI 123 Query: 134 LQHELDHLNGILF 146 +QHELDHL GI+ Sbjct: 124 IQHELDHLEGIII 136 >gi|119025798|ref|YP_909643.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703] gi|118765382|dbj|BAF39561.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703] Length = 106 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 6/112 (5%) Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R ++ +NP + S + EGCLS+P +R+ + VR + Sbjct: 1 MRAFSYNIDGKIGY-----VLNPVLEEASGE-QYGDEGCLSVPGLWYKTRRADYARVRGI 54 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D + + ++ G++ LQHE DHL+G +++D L + +R + M + Sbjct: 55 DLDGKPVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRTHRK 106 >gi|315931997|gb|EFV10950.1| polypeptide deformylase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 102 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 36/84 (42%), Positives = 51/84 (60%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + INP+II ++ EGCLS+PD+ +VKR I ++Y D + + + A G LA Sbjct: 2 LEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRFGEFKELEAKGFLAV 61 Query: 133 CLQHELDHLNGILFIDHLSRLKRD 156 +QHE DHLNG LFI+ +S KR Sbjct: 62 AIQHENDHLNGHLFIEKISFAKRQ 85 >gi|161830302|ref|YP_001597698.1| peptide deformylase [Coxiella burnetii RSA 331] gi|161762169|gb|ABX77811.1| peptide deformylase [Coxiella burnetii RSA 331] Length = 209 Score = 105 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 13/152 (8%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI-----DLQD 65 +L +V+ +E + I+ M S G G AA Q+G+ R++++ D Sbjct: 13 VLYKVASEVEIPLTKTTKEKIEAMRIFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH---- 121 P + +NP SD EGCLS+P V+R + + ++ Sbjct: 73 AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132 Query: 122 --QIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Y + QHE+DHL G +++D Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164 >gi|195978210|ref|YP_002123454.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974915|gb|ACG62441.1| peptide deformylase Def [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 136 Score = 105 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L++ ++P K + I ++ + + Y +GLAA IG R++++ + Sbjct: 12 LQQKAQPATKKDLWIGQ---DLQDTLAYYRDSCLGLAANMIGENKRVIIVSMGFVD---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP + F +E CLS+ R KR I V Y+D + + + GL A Sbjct: 65 -LVMFNPVLTAKRGAFEA-EESCLSLTGQR-RTKRYQEIKVDYLDTHWHKKSLRLTGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GIL Sbjct: 122 QICQHELDHLEGILI 136 >gi|229818453|ref|ZP_04448734.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM 20098] gi|229784323|gb|EEP20437.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM 20098] Length = 141 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 8/147 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLV 59 +++P+ P+L + S +D+ + ++ + + + +G+AA IG R++ Sbjct: 1 MQRPITTSI-PLLSQPSEEAHSTEADL-AVAQDLKDTLDAHRNGCVGMAANMIGEHKRII 58 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ R + NP+I + EGCLS+ R R I V YMD Sbjct: 59 AFVDEELGGRI--TLMFNPRITAQDGAYDTA-EGCLSLNGER-RTLRYQRIEVDYMDRRW 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH +G++ Sbjct: 115 RERHATFTGFTAQIIQHEIDHCDGVII 141 >gi|222152925|ref|YP_002562102.1| peptide deformylase [Streptococcus uberis 0140J] gi|222113738|emb|CAR41729.1| peptide deformylase [Streptococcus uberis 0140J] Length = 136 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58 + + +V DP+ L++ S K + I ++L+ + + + +G+AA IG R+ Sbjct: 1 MIRDIVK--DPLFLQQKSALATKEDIKIGT---DLLDTLAYHRENCLGMAANMIGESKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++I + +V NP II+ D F +E CLS+ R R I V Y+D + Sbjct: 56 IIISMGFVD-----LVMFNPMIISKKDSFHA-EESCLSLSGSR-KTTRYKEIKVDYLDHH 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 109 WMKKSLTLTGLPAQVCQHELDHLEGILI 136 >gi|225550917|ref|ZP_03771866.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225380071|gb|EEH02433.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 198 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 18/179 (10%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P PILR V++ IE +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAF 109 G I D A +++ + INP II S + + EGCLS+ D V R+ Sbjct: 81 GWNKCATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKK 139 Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + V+ D ++ I G++A C+QHE+ HL+ L+ D++++ + +K+ + Sbjct: 140 VHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQQQPFYAEPSWTKIGR 198 >gi|116627328|ref|YP_819947.1| peptide deformylase [Streptococcus thermophilus LMD-9] gi|116100605|gb|ABJ65751.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus LMD-9] gi|312277834|gb|ADQ62491.1| Peptide deformylase [Streptococcus thermophilus ND03] Length = 136 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L + S K + + + + LE +G+AA IGV R++++++ + Sbjct: 12 LGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVIIVNIGFVN-----L 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP +++ S F +E CLS+ R +R I V Y+D + + G+ + Sbjct: 66 VMFNPVLVSKSSSFQT-EESCLSLEGSR-PTRRYESIEVAYLDERWMPKQLSFSGMPSQI 123 Query: 134 LQHELDHLNGILF 146 +QHELDHL G++ Sbjct: 124 IQHELDHLEGVII 136 >gi|270290078|ref|ZP_06196304.1| polypeptide deformylase [Pediococcus acidilactici 7_4] gi|270281615|gb|EFA27447.1| polypeptide deformylase [Pediococcus acidilactici 7_4] Length = 136 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 10/134 (7%) Query: 14 LRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 L + S P + + ++L+D + + +GLAA IGV +++ + + Sbjct: 12 LSQKSVPATRADLPTALDLVDTLAA--NADRAVGLAANMIGVKKQIIAVSIGVMN----- 64 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + +NPK+ S + +EGCLS+ R+ R I V+Y D N + Q + G +A Sbjct: 65 IAMLNPKLTKKSHPYQA-KEGCLSLAGERS-TTRYKEIEVQYQDLNFKKQTQHFSGWIAE 122 Query: 133 CLQHELDHLNGILF 146 +QHE+DH G+L Sbjct: 123 IIQHEIDHCAGVLI 136 >gi|163816477|ref|ZP_02207841.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759] gi|158448177|gb|EDP25172.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759] Length = 136 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLV 59 + K +V L + S P+ +++ I I +M + + + +G+A IG R++ Sbjct: 1 MVKQIVR-DQMFLSQKSSPMTPMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + +V +NP +++ S + +EGCLS+ R V R I V + D + Sbjct: 57 IVSMGFAN-----VVMLNPVLLSKSGAYET-EEGCLSLDGTR-KVTRYRDIEVEFQDASF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + +G +A + HE+DHL G + Sbjct: 110 AKKRMKFNGYIAQIVLHEMDHLEGRII 136 >gi|225870619|ref|YP_002746566.1| peptide deformylase [Streptococcus equi subsp. equi 4047] gi|225700023|emb|CAW94040.1| peptide deformylase [Streptococcus equi subsp. equi 4047] Length = 136 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L++ ++P K + I ++ + + Y +GLAA IG R+++I + Sbjct: 12 LQQKAQPATKKDLWIGQ---DLQDTLAYYRDSCLGLAANMIGENKRVIIISMGFVD---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP +I + F +E CLS+ R KR I V Y+D + + + GL A Sbjct: 65 -LVMFNPVLIAKREAFEA-EESCLSLIGQR-KTKRYQEIKVDYLDAHWHKKSLRLTGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GIL Sbjct: 122 QICQHELDHLEGILI 136 >gi|223984418|ref|ZP_03634556.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM 12042] gi|223963613|gb|EEF67987.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM 12042] Length = 185 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 21/168 (12%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +V D LR S P+ ++ N + +L + + +G+AA+QI Sbjct: 4 IVKDSDAHLRDKSAPVSLPLSEADKNTLMELLTYVRESTDPELAEAKNLRPAVGIAAIQI 63 Query: 53 GVLYRLVVIDLQDHAHRKNPMV----FINPKIITFSDD--FSVYQEGCLS-IPDYRADVK 105 G+ +L+ + + + NP+ N KI++ S + EGCLS + D+ V Sbjct: 64 GIPKQLLAVVVDEEDKNGNPIHYEYALANAKIVSQSVQNAYLKTGEGCLSVLDDHPGYVI 123 Query: 106 RSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 RSA I V+ D + A G +A LQHE+DH +GILF D ++ Sbjct: 124 RSARIKVKGYDMLQDREVTFRASGYVAIVLQHEIDHFSGILFYDRINP 171 >gi|319776853|ref|YP_004136504.1| peptide deformylase [Mycoplasma fermentans M64] gi|318037928|gb|ADV34127.1| Peptide deformylase [Mycoplasma fermentans M64] Length = 189 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 22/176 (12%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIGV 54 LV P+ ILR+ S+ ++ ++ + L M+ + + G+G+AA+Q G+ Sbjct: 7 LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 66 Query: 55 LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLS----IPDYRADV 104 R+ I++ + + V INPK++ S+ + S+ EGCLS I + V Sbjct: 67 PKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGYV 126 Query: 105 KRSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 R I + + Y A QHE DHL G LFID +++ +I Sbjct: 127 YRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINKKDPFVIK 182 >gi|46190479|ref|ZP_00206479.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] Length = 128 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 9/134 (6%) Query: 15 RRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 R S + +I+++++ + + +G+AA IGV R++V +D R Sbjct: 2 RTPSEAAGPGDE---QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI-- 56 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 V +NP I T SD QEGCLS+ R R I V Y + + + G A Sbjct: 57 TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRYRRIEVNYENRRFRARHATFAGWTAQ 114 Query: 133 CLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 115 IIQHEVDHCNGIII 128 >gi|295425019|ref|ZP_06817727.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] gi|295065294|gb|EFG56194.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] Length = 137 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 13/148 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 M + + I L+R S+P K + +N+ ++ + + + +GLAA IG R+ Sbjct: 1 MAAQNI-IHDQMFLQRKSQPATKAD---LNIAIDLRDTLIAKRNLALGLAANMIGKDKRI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + A MV INP+II + + +EGCLS+ R+ KR I V + N Sbjct: 57 IAFYVGPLA-----MVMINPRIIDKEERYIT-KEGCLSLSGERS-TKRYKKIRVSFQTMN 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 +++ DGL + +QHE+DH +GIL Sbjct: 110 FENRTQEFDGLTSEVIQHEIDHCDGILI 137 >gi|225868458|ref|YP_002744406.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus] gi|225701734|emb|CAW99099.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus] Length = 136 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L++ ++P K + I ++ + + Y +GLAA IG R++++ + Sbjct: 12 LQQKAQPATKKDLWIGQ---DLQDTLAYYRDSCLGLAANMIGENKRVIIVSMGFVD---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP + + F +E CLS+ R R I V Y+D + + + GL A Sbjct: 65 -LVMFNPVLTAKREAFEA-EESCLSLTGQR-RTTRYQEIKVDYLDTHWHKKSLRLTGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GIL Sbjct: 122 QICQHELDHLEGILI 136 >gi|55820518|ref|YP_138960.1| peptide deformylase [Streptococcus thermophilus LMG 18311] gi|55822406|ref|YP_140847.1| peptide deformylase [Streptococcus thermophilus CNRZ1066] gi|55736503|gb|AAV60145.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311] gi|55738391|gb|AAV62032.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066] Length = 136 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S K + + L ++ + + + +G+AA IGV R++++++ Sbjct: 12 LGQKSTEATKED---LYLAKDLRDTLEFHKDTCVGMAANMIGVKKRVIIVNIGFVN---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP +++ S F +E CLS+ R +R I V Y+D + + G+ + Sbjct: 65 -LVMFNPVLVSKSSSFQT-EESCLSLEGSR-PTRRYESIEVAYLDERWMPKQLSFSGMPS 121 Query: 132 TCLQHELDHLNGILF 146 +QHELDHL G++ Sbjct: 122 QIIQHELDHLEGVII 136 >gi|295094704|emb|CBK83795.1| N-formylmethionyl-tRNA deformylase [Coprococcus sp. ART55/1] Length = 136 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLV 59 + K +V L + S P+ +++ I I +M + + + +G+A IG R++ Sbjct: 1 MVKQIVR-DQMFLSQKSSPMTTMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + +V +NP +++ S + +EGCLS+ R V R I V + D + Sbjct: 57 IVSMGFAN-----VVMLNPVLLSKSGAYET-EEGCLSLDGTR-KVTRYRDIEVEFQDASF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + +G +A + HE+DHL G + Sbjct: 110 AKKRMKFNGYIAQIVLHEMDHLEGRII 136 >gi|238809638|dbj|BAH69428.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 195 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 22/176 (12%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIGV 54 LV P+ ILR+ S+ ++ ++ + L M+ + + G+G+AA+Q G+ Sbjct: 13 LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 72 Query: 55 LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLS----IPDYRADV 104 R+ I++ + + V INPK++ S+ + S+ EGCLS I + V Sbjct: 73 PKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGYV 132 Query: 105 KRSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 R I + + Y A QHE DHL G LFID +++ +I Sbjct: 133 YRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINKKDPFVIK 188 >gi|326511637|dbj|BAJ91963.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326514272|dbj|BAJ92286.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 121 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 32/79 (40%), Positives = 44/79 (55%) Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V INPK+ S + + EGCLS+ YRA V+R + V +D N + + A G A Sbjct: 20 VVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLDVEVSGLDRNGRPMKVEASGWQARI 79 Query: 134 LQHELDHLNGILFIDHLSR 152 LQHE DHL G L++D + Sbjct: 80 LQHECDHLEGTLYVDKMVP 98 >gi|312864304|ref|ZP_07724538.1| peptide deformylase [Streptococcus vestibularis F0396] gi|311100305|gb|EFQ58514.1| peptide deformylase [Streptococcus vestibularis F0396] Length = 136 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L + S K + + + + LE +G+AA IGV R++++++ + Sbjct: 12 LGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVIIVNIGFVN-----L 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP +++ S F +E CLS+ R +R I V Y+D + + G+ A Sbjct: 66 VMFNPVLVSKSSLFQT-EESCLSLEGSR-PTRRYESIEVAYLDEQWMLKQLNFSGMPAQI 123 Query: 134 LQHELDHLNGILF 146 +QHELDHL GI+ Sbjct: 124 IQHELDHLEGIII 136 >gi|212211904|ref|YP_002302840.1| peptide deformylase [Coxiella burnetii CbuG_Q212] gi|212010314|gb|ACJ17695.1| peptide deformylase [Coxiella burnetii CbuG_Q212] Length = 213 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 13/152 (8%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI-----DLQD 65 +L +V+ +E + I+ M S G G AA Q+G+ R++++ D Sbjct: 17 VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 76 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH---- 121 P + +NP SD EGCLS+P V+R + + ++ Sbjct: 77 AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHMELTAWLYHSDTEALS 136 Query: 122 --QIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Y + QHE+DHL G +++D Sbjct: 137 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 168 >gi|295099860|emb|CBK88949.1| N-formylmethionyl-tRNA deformylase [Eubacterium cylindroides T2-87] Length = 136 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 9/124 (7%) Query: 25 NSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT 82 N D +++ ++++ + + G+AA IG R++ + +V +NP+II Sbjct: 20 NKDDLSIAQDLIDTLEAHKVSCAGMAANMIGFHKRIIAFQDEGKI-----VVMLNPEIIK 74 Query: 83 FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 S +S +EGCLS+ R + KR I VRY+D + +I A +QHE+DH + Sbjct: 75 KSQIYSA-KEGCLSLSGQR-ETKRYRSIKVRYLDMQMKIKIKTFKDFTAQVIQHEIDHCD 132 Query: 143 GILF 146 GIL Sbjct: 133 GILI 136 >gi|58336410|ref|YP_192995.1| peptide deformylase [Lactobacillus acidophilus NCFM] gi|58253727|gb|AAV41964.1| polypeptide deformylase [Lactobacillus acidophilus NCFM] Length = 137 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 13/148 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 M K + I L + S N+ M + ++ + + + GLAA IG R+ Sbjct: 1 MAVKNI-IHDQLFLMQKS---TLANAKDMQVAVDLRDTLLANRNKAAGLAANMIGEAKRI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + PMV NPKII +++ EGCLS+ R VKR ITV+Y + N Sbjct: 57 IAFYI-----VGMPMVMFNPKIIQKGNEYLAT-EGCLSLNGER-PVKRYEHITVKYQNIN 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 +++ G +A +QHE+DH +G + Sbjct: 110 LEYETQEFSGFVAETIQHEIDHCDGKII 137 >gi|308189670|ref|YP_003922601.1| peptide deformylase [Mycoplasma fermentans JER] gi|307624412|gb|ADN68717.1| peptide deformylase [Mycoplasma fermentans JER] Length = 189 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 22/176 (12%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIGV 54 LV P+ ILR+ S+ ++ ++ + L M+ + + G+G+AA+Q G+ Sbjct: 7 LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 66 Query: 55 LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLS----IPDYRADV 104 R+ I++ + + V INPK++ S+ + S+ EGCLS I + V Sbjct: 67 PKRMFYININNETINGAKIEDFRDVLINPKVLAISEYEVSLPGEGCLSVGDNIKNQEGYV 126 Query: 105 KRSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 R I + + Y A QHE DHL G LFID +++ +I Sbjct: 127 YRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINKKDPFVIK 182 >gi|148972164|ref|ZP_01811404.1| peptide deformylase [Leptolyngbya valderiana BDU 20041] gi|148872760|gb|EDL71126.1| peptide deformylase [Leptolyngbya valderiana BDU 20041] Length = 118 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 48/88 (54%) Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 HA P +NP+I+ SDD + EGCLS+P R V R I V Y+D + + Q Sbjct: 11 PHAPMLEPTAMVNPRILHCSDDRVLGWEGCLSVPGRRGWVPRYREIEVEYLDRSGRLQRR 70 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 +A QHE DHLNG++F+D + + Sbjct: 71 VLKDFVARIFQHEFDHLNGLVFLDRVEK 98 >gi|319957487|ref|YP_004168750.1| formylmethionine deformylase [Nitratifractor salsuginis DSM 16511] gi|319419891|gb|ADV47001.1| formylmethionine deformylase [Nitratifractor salsuginis DSM 16511] Length = 283 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 8/164 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K LV++PD + + + + L++++ E M + L A+Q+ + ++V Sbjct: 1 MVKELVVYPDDRILS-CVDVRDFRDESLPRLLNDIEETMEAHGLNALTAMQVAHPFNIIV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I +D ++ + INP+I+ F +QE PD V R I + Y D N Q Sbjct: 60 IKKEDGSYWE----LINPRILKKEGRFE-HQESTSYYPDIELTVPRYEKINLIYEDRNGQ 114 Query: 121 HQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I + LA +Q ++D L G +D + + R+ + ++ Sbjct: 115 PHSIKIEDRELAALIQQQMDFLAGGTPLDRVDKNYREKVLTALA 158 >gi|257063393|ref|YP_003143065.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] gi|256791046|gb|ACV21716.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] Length = 140 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60 + + +V D IL S+P ++ ++ +++++++ + S GLAA QIG R+VV Sbjct: 1 MIREIVT-DDEIL---SKPCDEGTAEDAAIVEDLIDTLKSLETAAGLAANQIGETKRIVV 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NA 119 + NP NP I + +V +E CLS VKR A I V Y + N Sbjct: 57 Y----LDMKDNPHAMFNPVIKMALNPSTVAEE-CLSHEGQYVTVKRFAKINVAYQELING 111 Query: 120 Q--HQIIYADGLLATCLQHELDHLNGIL 145 Q + +G A +QH +DH NG L Sbjct: 112 QLVDRKRKFEGWTAQVIQHLVDHCNGKL 139 >gi|238855159|ref|ZP_04645481.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|260665536|ref|ZP_05866382.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|282932572|ref|ZP_06337994.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|313473142|ref|ZP_07813626.1| peptide deformylase [Lactobacillus jensenii 1153] gi|238832240|gb|EEQ24555.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|239528614|gb|EEQ67615.1| peptide deformylase [Lactobacillus jensenii 1153] gi|260560657|gb|EEX26635.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|281303320|gb|EFA95500.1| peptide deformylase [Lactobacillus jensenii 208-1] Length = 136 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59 + K +V + L+R S P K + I ++ + + + +G+AA IG R++ Sbjct: 1 MIKEIVK-DEMFLKRKSLPATKADLPIGQ---DLRDTLQANKERCVGMAANMIGYSKRVI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++++ +V N I+ D + V EGCLS+ R + R + V ++D Sbjct: 57 IVNIGFLN-----VVMFNSVILERKDPYQVS-EGCLSLSGSR-NTLRFKEVKVAFLDEKW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 ++Q + G A QHE+DHL GIL Sbjct: 110 ENQELTLTGFAAEICQHEMDHLEGILI 136 >gi|145531163|ref|XP_001451350.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124419001|emb|CAK83953.1| unnamed protein product [Paramecium tetraurelia] Length = 219 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 15/169 (8%) Query: 6 LVIFPDP---ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 ++ D + + ++PI+ ++ + +I + + + L+ QIG Y++ V+ Sbjct: 20 ILRIGDKDYQKITQQTQPIQMMSQRMKQIIQCLKMTAAQENAVSLSCPQIGYNYQIFVVL 79 Query: 62 -------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ + M INP+ + S V E C S P V+R I ++ Sbjct: 80 KHMKKNQWCYNNLSSSDYMTLINPQKLKQSRFTQVEWEECPSFPFLMGKVERPYKIEYQF 139 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + G A +QHE+DHL GI L + ++ K Sbjct: 140 INEKFKLIKQTLSGFEARVVQHEMDHLEGIT----LDSPDKMLLESKRE 184 >gi|297201621|ref|ZP_06919018.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] gi|197711008|gb|EDY55042.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] Length = 146 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDY 100 G GLAA Q+GV RL V D D ++ +NP++ EGCLS P Sbjct: 20 GAGLAANQVGVGLRLFVYDCPDDDEVRHVGHLVNPELDQLDPAGRRLLDDSEGCLSGPGA 79 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 V R R D + + +I G A C HE D N Sbjct: 80 VMAVPRPDRAGGRGFDRDGEPLVIEGTGYFAGCPAHETDTAN 121 >gi|315221248|ref|ZP_07863171.1| peptide deformylase [Streptococcus anginosus F0211] gi|315189607|gb|EFU23299.1| peptide deformylase [Streptococcus anginosus F0211] Length = 140 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + KP+V D + L++ ++P K + I ++ + + + +G+AA IGV ++ Sbjct: 5 MIKPIVK--DMLFLQQKAQPACKEDVGIGQ---DLFDTLKANQDKCVGMAANMIGVQKQV 59 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ + P++ NP + + +E CLS+ R R ITV Y+D + Sbjct: 60 IIF-----MYGMVPVIMFNPILKRKLSPYRA-EESCLSLAGSR-LTTRYKEITVDYLDQH 112 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q + A QHELDHL GIL Sbjct: 113 WQKQTLTLKDFPAQICQHELDHLEGILI 140 >gi|320546940|ref|ZP_08041241.1| peptide deformylase [Streptococcus equinus ATCC 9812] gi|320448342|gb|EFW89084.1| peptide deformylase [Streptococcus equinus ATCC 9812] Length = 136 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + K +V D L + S + + + L ++ + + + + +G+AA IGV R Sbjct: 1 MIKEIVK--DTFFLAQKSEEATEAD---LYLATDLQDTLNANRENCVGMAANMIGVKKRA 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +++++ ++ NP + S F +E CLS+ R+ +R I V +MD N Sbjct: 56 IIVNMG-----LGDLIMFNPVMTNKSLPFDT-EESCLSLVGSRS-TRRYQKIDVTFMDKN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A QHELDHL GI+ Sbjct: 109 WNKQSLTLTGLPAQICQHELDHLEGIII 136 >gi|171778277|ref|ZP_02919483.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282977|gb|EDT48401.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 136 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + K +V D L + S+ K + + L ++ + + + + IG+AA IGV R+ Sbjct: 1 MIKEIVK--DTFFLAQKSQEATKED---LYLAQDLQDTLNANRDNCIGMAANIIGVKKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +++++ +V NP + S F +E CLS+ R +R I V +MD N Sbjct: 56 IIVNMGLAD-----LVMFNPVMTNKSLPFDT-EESCLSLLGSR-PTRRYQKIDVTFMDKN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A QHELDHL GI+ Sbjct: 109 WNKQSLTLTGLAAQICQHELDHLEGIII 136 >gi|188588885|ref|YP_001921872.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43] gi|188499166|gb|ACD52302.1| polypeptide deformylase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 136 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L S K + +ID++++ + + +GLAA IGV R++V Sbjct: 12 LGEKSEEATKKD---KVVIDDLIDTLKANIEHCVGLAANMIGVKKRILVFVAGKVI---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + +NP I+ + +E CLS+ +R KR I V+Y+D N + + G +A Sbjct: 65 -IPMVNPVILKKEKIYET-EESCLSLTGFR-KTKRYEIIEVQYLDKNFKKKKQVFTGFVA 121 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH GI+ Sbjct: 122 QIIQHEMDHFEGIII 136 >gi|227530489|ref|ZP_03960538.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] gi|227349594|gb|EEJ39885.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] Length = 136 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + KP+ +L++ + P + + ++ ++ + + + + IG+AA I + ++ Sbjct: 1 MIKPI-NHDQILLQQRAIPATRQDLNVGI---DLKDTLNAHHAECIGMAANMISINKAII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + L MV NP+I + + EGCLS+P R V R I V + D N Sbjct: 57 IASLGPIN-----MVMYNPQITQKQEPYQTA-EGCLSLPGKR-TVTRYRQIKVTFRDQNW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q + + A +QHE+DHLNGIL Sbjct: 110 HLQTLQLSDIAAEIIQHEIDHLNGILI 136 >gi|238925766|ref|YP_002939283.1| polypeptide deformylase [Eubacterium rectale ATCC 33656] gi|238877442|gb|ACR77149.1| polypeptide deformylase [Eubacterium rectale ATCC 33656] Length = 135 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 17/143 (11%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 MVKK I DP+ L + S + + ++ ++L+ + + +G+AA IGV Sbjct: 1 MVKK---IMRDPLFLAQKSEDATEDD---KQVVTDLLDTLKANLDHCVGMAANMIGVKKN 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V+ INP I S F +EGCLS+ R R I V Y+D Sbjct: 55 IIVVAAGPFQ-----FAMINPVITGKSGAFQT-EEGCLSLEGVR-PCTRYKEIEVDYLDQ 107 Query: 118 NAQHQIIYADGLLATCLQH-ELD 139 N + + G A +QH E D Sbjct: 108 NFKKKHGKYTGWTAQIIQHDECD 130 >gi|251781139|ref|ZP_04824059.1| polypeptide deformylase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085454|gb|EES51344.1| polypeptide deformylase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 136 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L S K + +ID++++ + + +GLAA IGV R++V Sbjct: 12 LGEKSEEATKKD---KVVIDDLIDTLKANIEHCVGLAANMIGVKKRILVFVAGKVI---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + +NP I+ + +E CLS+ +R KR I V+Y+D N + + G +A Sbjct: 65 -IPMVNPVILKKEKIYET-EESCLSLTGFR-KTKRYEIIEVQYLDKNFKKKKQVFTGFVA 121 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH GI+ Sbjct: 122 QIIQHEMDHFEGIII 136 >gi|306833720|ref|ZP_07466847.1| peptide deformylase [Streptococcus bovis ATCC 700338] gi|304424490|gb|EFM27629.1| peptide deformylase [Streptococcus bovis ATCC 700338] Length = 136 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S K + + L ++ + + + + +G+AA IGV R +++++ Sbjct: 12 LAQKSEEATKED---LYLAQDLQDTLVANRDNCVGMAANMIGVKKRAIIVNMGVAD---- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +V NP ++ S F +E CLS+ R +R I V ++D N Q + GL A Sbjct: 65 -LVMFNPVLLNKSLPFDT-KESCLSLTGAR-PTRRYQKIEVAFLDKNWSQQTLTLTGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL G++ Sbjct: 122 QICQHELDHLEGVII 136 >gi|187934485|ref|YP_001886878.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] gi|187722638|gb|ACD23859.1| polypeptide deformylase family protein [Clostridium botulinum B str. Eklund 17B] Length = 136 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + KP+V +L S K + + ID++++ + + +GLA IGV R Sbjct: 1 MIKPIVK---DVLFLGEKSEEATKKDKAV---IDDLIDTLKANIEHCVGLAGNMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + +NP I+ + +E CLS+ +R KR I V+Y+D Sbjct: 55 ILVFVAGKVI-----IPMVNPVILKKEKSYET-EESCLSLTGFR-KTKRYEIIEVQYLDK 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + G +A +QHE+DH GI+ Sbjct: 108 NFKKKKKVFTGFVAQIIQHEMDHFEGIII 136 >gi|139438029|ref|ZP_01771582.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC 25986] gi|133776226|gb|EBA40046.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC 25986] Length = 136 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + KP++ + LR S ++ +L+D + E + + +GLAA IGV R++ Sbjct: 1 MIKPIMKS-EFFLRLPSEDAGPDDAVTGQDLLDTLHE--HEHECVGLAANMIGVRKRIIC 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + A ++ NP+I+ + + EGCLS+ R R I V Y+D N Sbjct: 58 VKDGNRA-----LLMYNPQILEQVNAYQTS-EGCLSLIGER-PCTRYRRIKVEYLDENFV 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 H+I G A +QHE+DH NGI+ Sbjct: 111 HRIKNFSGYTAEVIQHEIDHCNGIVI 136 >gi|145491449|ref|XP_001431724.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398829|emb|CAK64326.1| unnamed protein product [Paramecium tetraurelia] Length = 180 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 13/156 (8%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVM------YSTDGIGLAAVQIGVLYRLVVI-DL 63 ILR+ + + + M++ + +S + + LAA Q+G RL V DL Sbjct: 19 HEILRKKIFEHYNFTNKEEDTLSTMIDTLRLYNKLHSIEALALAAPQVGWEKRLFVCADL 78 Query: 64 QDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDC 117 + +K V++NP+II S+D V +E CLSIP + A V RS IT++Y + Sbjct: 79 ELQQRKKAKYIQKVDVYLNPEIIKKSNDLIVSKENCLSIPPNQIACVMRSNKITMKYYNL 138 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ A+GL A QHE+DHL+GI ++ + + Sbjct: 139 LGIEMVVEAEGLQACIYQHEIDHLDGINALEKATSI 174 >gi|290476476|ref|YP_003469381.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] gi|289175814|emb|CBJ82617.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] Length = 96 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PD LR+ + ++ +I LID+ML+ MY T +GIGLAA Q+G ++ Sbjct: 1 MAILNILTIPDERLRQKCIDVTHVD-EIQTLIDDMLDTMYDTDNGIGLAAPQVGRKEAVL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97 +ID+ +R PMV +NPKI+ + V QEGCLSI Sbjct: 60 IIDISP--NRDQPMVLVNPKIVEK-ERRVVNQEGCLSI 94 >gi|257068452|ref|YP_003154707.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] gi|256559270|gb|ACU85117.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] Length = 240 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 17/131 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV-------------FINPKII 81 M M + G+GLAA Q+G+ VI+ + V ++P + Sbjct: 67 MTVTMRAAPGVGLAAPQVGLPLSFYVIEDRYADEPGEDEVGDLLERRPLPLRALLDPVLE 126 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA----QHQIIYADGLLATCLQHE 137 EGCLS+ +++ V RS + +R + + G A LQHE Sbjct: 127 PLGTQRVYAFEGCLSVDGWQSIVPRSRRVLLRATELLGDGSLREVEEEHVGWTARILQHE 186 Query: 138 LDHLNGILFID 148 DHL G L D Sbjct: 187 TDHLAGTLCHD 197 >gi|291524038|emb|CBK89625.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale DSM 17629] Length = 135 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 17/143 (11%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 MVKK I DP+ L + S + + ++ ++L+ + + +G+AA IGV Sbjct: 1 MVKK---IMRDPLFLAQKSEDATEDD---KQVVTDLLDTLKANLDHCVGMAANMIGVKKN 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V+ INP I S F +EGCLS+ R R I V Y+D Sbjct: 55 IIVVAAGPFQ-----FAMINPVITGKSGVFQT-EEGCLSLEGVR-PCTRYKEIEVDYLDQ 107 Query: 118 NAQHQIIYADGLLATCLQH-ELD 139 N + + G A +QH E D Sbjct: 108 NFKKKHGKYTGWTAQIIQHDECD 130 >gi|29655164|ref|NP_820856.1| peptide deformylase [Coxiella burnetii RSA 493] gi|39931092|sp|Q83AK6|DEF2_COXBU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|29542436|gb|AAO91370.1| peptide deformylase [Coxiella burnetii RSA 493] Length = 209 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 13/152 (8%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI-----DLQD 65 +L +V+ +E + I+ M S G G A Q+G+ R++++ D Sbjct: 13 VLYKVASEVEIPLTKTTKEKIEAMRIFYKSFQGKAGFAVPQVGLSERIILVEQHLFDTTM 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH---- 121 P + +NP SD EGCLS+P V+R + + ++ Sbjct: 73 AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132 Query: 122 --QIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Y + QHE+DHL G +++D Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164 >gi|115437554|ref|NP_001043323.1| Os01g0555800 [Oryza sativa Japonica Group] gi|113532854|dbj|BAF05237.1| Os01g0555800 [Oryza sativa Japonica Group] Length = 121 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 62 DLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D++ R + +V INPK+ T S +++ EGCLS+ YRA V+R + V +D N + Sbjct: 7 DIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGR 66 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A G A LQHE DHL G L++D + Sbjct: 67 PIKVEASGWQARILQHECDHLEGTLYVDTMVP 98 >gi|42560770|ref|NP_975221.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492266|emb|CAE76863.1| Peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320698|gb|ADK69341.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 200 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97 Y +GLAA QIGV + + Q ++ IN K+I+ S + EGCLS+ Sbjct: 70 YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129 Query: 98 PDYR-ADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 +Y V R I V+ D + + A QHE+DH G+L+ DH+++ Sbjct: 130 DNYHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|154505120|ref|ZP_02041858.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149] gi|153794599|gb|EDN77019.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149] Length = 159 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD-----GIGLAAVQIGVL 55 +++ +++ +P L +S +++ + + ++ +M + + G +AA QIGV Sbjct: 1 MERDILLLGNPRLYEISEEVKREELEELRSVFTDMFDCIRGIRRDYGFGRAIAAPQIGVQ 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ I P V INP++ ++ + C+S P+ V+R + Y+ Sbjct: 61 KRLICILTD------QPYVIINPRLEFVGNEMMELMDDCMSFPNLLVRVRRYRRCILHYL 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D N + Q +Y + ++ +QHE DHL+GIL K +I + Sbjct: 115 DENWKEQEMYLEDDMSELIQHEYDHLDGILATMRAIDNKSFVIKQ 159 >gi|256843756|ref|ZP_05549243.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|295691921|ref|YP_003600531.1| peptide deformylase [Lactobacillus crispatus ST1] gi|256613661|gb|EEU18863.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|295030027|emb|CBL49506.1| Peptide deformylase [Lactobacillus crispatus ST1] Length = 137 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 13/148 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRL 58 M + + I LR+ S + + + + N+ + + + G GLAA IG ++ Sbjct: 1 MTAQKI-IHDQLFLRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTKQI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + P V +NP+II + EGCLS+ R +V+R ITV Y + Sbjct: 57 IAFYAGPL-----PFVMLNPRIIQKKQMYLAS-EGCLSLEGER-NVQRYEEITVTYQNME 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH NGIL Sbjct: 110 LETVTQTFGDFIAETIQHEIDHCNGILI 137 >gi|289676938|ref|ZP_06497828.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 100 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 35/90 (38%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + INP I EGCLS+P R V R I D Q A G A Sbjct: 1 TILINPLITPLGSTLEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPQGQPIERVAHGFHAR 60 Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +QHE DHL G L+ ++ + M Sbjct: 61 VVQHECDHLIGRLYPSRITDFSKFGFMDVM 90 >gi|160895157|ref|ZP_02075930.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50] gi|156863191|gb|EDO56622.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50] Length = 144 Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57 + KP+V IL + S P +++ MN+++++ + + + +G+ A IG Sbjct: 9 MVKPIVK---DILFLGQKSVPATQLD---MNVVNDLRDTLAANRERCVGMEANMIGYKKN 62 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++++ M+ INP I + + +EGCLS+ R R I V + D Sbjct: 63 MIIVSAGPVD-----MIMINPVICSKIGRYET-EEGCLSLEGKR-KTTRYKKIEVEFQDA 115 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 + + +G +A +QHE+DH NGI+ Sbjct: 116 GFVKRKMAFEGFVAQIIQHEVDHCNGIVI 144 >gi|256849685|ref|ZP_05555117.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US] gi|262047729|ref|ZP_06020681.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] gi|293380519|ref|ZP_06626582.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|312977032|ref|ZP_07788781.1| peptide deformylase [Lactobacillus crispatus CTV-05] gi|256713801|gb|EEU28790.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US] gi|260571934|gb|EEX28502.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] gi|290922919|gb|EFD99858.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|310896360|gb|EFQ45425.1| peptide deformylase [Lactobacillus crispatus CTV-05] Length = 137 Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR+ S + + + + N+ + + + G GLAA IG +++ Sbjct: 13 LRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTKQIIAFYAGPL----- 64 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P V +NP+II + EGCLS+ R +V+R ITV Y + + +A Sbjct: 65 PFVMLNPRIIQKKQMYLAS-EGCLSLEGER-NVQRYEEITVTYQNMELETVTQTFGDFIA 122 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH NGIL Sbjct: 123 ETIQHEIDHCNGILI 137 >gi|260881156|ref|ZP_05403747.2| peptide deformylase [Mitsuokella multacida DSM 20544] gi|260849662|gb|EEX69669.1| peptide deformylase [Mitsuokella multacida DSM 20544] Length = 139 Score = 99.4 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59 + + +V L + S P ++ + I +++++ + + +GLAA IG ++ Sbjct: 3 MIRDIVR-DTFFLAQPSVPAQRKDVPI---AEDLIDTLKANADRCVGLAANMIGERKCII 58 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I + + +NP +I S + EGCLS+ R R +I V Y D Sbjct: 59 AIRVG-----HAYLAMLNPTVIRHSKEVYNVSEGCLSLDGER-PTTRYKWIEVEYRDLKF 112 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q A +QHE+DH GIL Sbjct: 113 KKQKQVFRDFPAEIVQHEMDHCEGILI 139 >gi|83319871|ref|YP_424193.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283757|gb|ABC01689.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 200 Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 4/117 (3%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97 Y +GLAA QIGV + + Q ++ IN K+I+ S + EGCLS+ Sbjct: 70 YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129 Query: 98 P-DYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 D+ V R I V+ D + + A QHE+DH GIL+ DH+++ Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGILYYDHINK 186 >gi|118386952|ref|XP_001026593.1| polypeptide deformylase family protein [Tetrahymena thermophila] gi|89308360|gb|EAS06348.1| polypeptide deformylase family protein [Tetrahymena thermophila SB210] Length = 318 Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 12/165 (7%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV----------IDL 63 L P++ + + I N+ + + LAA QIG+ R +V + + Sbjct: 92 LESKCLPVQGFTQTLKSEILNLKYHAEVSGRVNLAANQIGIPKRFIVLAKPDYLYKRVWV 151 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D+ ++ +NP+I+ E P R R I V+Y++ + Sbjct: 152 NDNLDIQHLHALVNPRILDKDKFMEYDWEQTACFPTVRFRRLRYHHILVQYLNEQMEQVE 211 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM--SKLV 166 + +G + Q LDHLNGI+ D + + + + KL+ Sbjct: 212 VEMNGWESRLFQQSLDHLNGIIPFDEVKNMLDFELLPEYNDEKLI 256 >gi|227878034|ref|ZP_03996024.1| peptide deformylase [Lactobacillus crispatus JV-V01] gi|227862352|gb|EEJ69881.1| peptide deformylase [Lactobacillus crispatus JV-V01] Length = 143 Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR+ S + + + + N+ + + + G GLAA IG +++ Sbjct: 19 LRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTKQIIAFYAGPL----- 70 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P V +NP+II + EGCLS+ R +V+R ITV Y + + +A Sbjct: 71 PFVMLNPRIIQKKQMYLAS-EGCLSLEGER-NVQRYEEITVTYQNMELETVTQTFGDFIA 128 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH NGIL Sbjct: 129 ETIQHEIDHCNGILI 143 >gi|331703218|ref|YP_004399905.1| peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801773|emb|CBW53926.1| Peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 200 Score = 97.8 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97 Y +GLAA QIGV + + Q ++ IN K+I+ S + EGCLS+ Sbjct: 70 YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129 Query: 98 P-DYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 D+ V R I V+ D + + A QHE+DH G+L+ DH+++ Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|313665134|ref|YP_004047005.1| peptide deformylase [Mycoplasma leachii PG50] gi|312949522|gb|ADR24118.1| peptide deformylase [Mycoplasma leachii PG50] Length = 200 Score = 97.8 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97 Y +GLAA QIGV + + Q ++ IN K+I+ S + EGCLS+ Sbjct: 70 YLRPAVGLAAPQIGVNKDIFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129 Query: 98 P-DYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 D+ V R I V+ D + + A QHE+DH G+L+ DH+++ Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|302519737|ref|ZP_07272079.1| formylmethionine deformylase [Streptomyces sp. SPB78] gi|302428632|gb|EFL00448.1| formylmethionine deformylase [Streptomyces sp. SPB78] Length = 403 Score = 97.8 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 15/146 (10%) Query: 18 SRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + P+ + + +I ++D +L G+GL+A QIGV ++ Sbjct: 243 AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPW 302 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A + +NP++I S + + E C P R R ITVR Sbjct: 303 GAPA---VTLLNPRVIAGSRETAEEYESCPGRPGPRTPTSRPNEITVRTTTLTGHPLTTT 359 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 LA + HE+DHL G+L L Sbjct: 360 YTQPLARLVHHEIDHLKGLLHPPRLP 385 >gi|256384123|gb|ACU78693.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384955|gb|ACU79524.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455689|gb|ADH21924.1| peptide deformylase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 200 Score = 97.8 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97 Y +GLAA QIGV + + Q ++ IN K+I+ S + EGCLS+ Sbjct: 70 YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129 Query: 98 P-DYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 D+ V R I V+ D + + A QHE+DH G+L+ DH+++ Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|294669089|ref|ZP_06734175.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309081|gb|EFE50324.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 76 Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 41/65 (63%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+EKI+ I LI +M + MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDDRLHTVAKPVEKIDERIKTLITDMFDTMYEARGIGLAATQVDVHERVVV 60 Query: 61 IDLQD 65 +DL + Sbjct: 61 MDLSE 65 >gi|307069643|ref|YP_003878120.1| peptide deformylase [Candidatus Zinderia insecticola CARI] gi|306482903|gb|ADM89774.1| peptide deformylase [Candidatus Zinderia insecticola CARI] Length = 144 Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 86/143 (60%), Gaps = 2/143 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P+ L ++S+ I KIN+ I NLI M E+MY+ GIGL+A+ + + + + Sbjct: 4 IINYPNKNLFKISKKIYKINNKIKNLIFYMSEIMYNLLGIGLSAI--QINKKKKIFIIDI 61 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++ +FIN KI+ S ++EGCLS P ++KRS +I + +++ + +I Sbjct: 62 SKNKNKLKIFINSKILYLSKKKIYFKEGCLSFPGIYKNIKRSIYIKIIFINIKGKFKIYK 121 Query: 126 ADGLLATCLQHELDHLNGILFID 148 + + + C+QHE++H+NG +F++ Sbjct: 122 SKNIFSICIQHEIEHINGKIFLN 144 >gi|94502278|ref|ZP_01308760.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451171|gb|EAT14114.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 117 Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 9/104 (8%) Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 VFINP II + +EGCLSIP+ ++KR I + Y D N + + +GLL+ Sbjct: 1 VFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKKYKQHFNGLLSII 60 Query: 134 LQHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168 +QHE DH+ G LFID++ LK +I K K+ KL +L Sbjct: 61 IQHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 104 >gi|163784804|ref|ZP_02179594.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1] gi|159879931|gb|EDP73645.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1] Length = 108 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 7/109 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M K ++ +PD L+ VS+ + + ++ + MY++ G+G+AA Q+ R + Sbjct: 1 MKKLKILTYPDERLKVVSKEVIDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNKHIRTI 60 Query: 60 VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 ++D + H+KN MV NPKII + + + +E C+S+PDY + Sbjct: 61 IVDASHYKHKKNKLNHGLMVLSNPKIIAYDGEIII-RERCMSVPDYTGN 108 >gi|50365386|ref|YP_053811.1| polypeptide deformylase [Mesoplasma florum L1] gi|50363942|gb|AAT75927.1| polypeptide deformylase [Mesoplasma florum L1] Length = 200 Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 4/123 (3%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI 97 Y +GLAA QIGV + I ++ IN + + S + + EGCLS+ Sbjct: 71 YLRPAVGLAAPQIGVNKDMFYIRFNLPNNQIEEYAMINTEYLAKSSRMAALEEGEGCLSV 130 Query: 98 P-DYRADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D V RS I+V+ D + + + QHE+DH G L+ DH++ + Sbjct: 131 DEDKHGIVPRSWIISVKGFDWLKKEWVELKLKDYRSIVFQHEMDHNIGNLYYDHINVNEP 190 Query: 156 DMI 158 + I Sbjct: 191 EFI 193 >gi|328868869|gb|EGG17247.1| hypothetical protein DFA_08237 [Dictyostelium fasciculatum] Length = 201 Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 25/172 (14%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL--AAV-------Q 51 M+ K ++ + +L++V++P K ++ +L++M L A Q Sbjct: 1 MISKNILKIGNSLLKQVAQPWTKEELKDTKRVEKLLDLMDDVLIPSLQSAQPIKRNSNYQ 60 Query: 52 I-------------GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98 I G L +L + + PK IT ++ V E CLS+P Sbjct: 61 ITSGGPVFGKTGIAGSSKNLF--NLTKYKRSMQTPLVTTPKKITANNTIDV-WESCLSVP 117 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Y V R+ + + D + I ADGL++ CLQHE DHL G +F + L Sbjct: 118 SYYGRVTRARKCIINFWDITGTPRSIEADGLISACLQHENDHLLGRVFFERL 169 >gi|291390393|ref|XP_002711708.1| PREDICTED: peptide deformylase-like [Oryctolagus cuniculus] Length = 126 Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 38/78 (48%) Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V +NP + + EGC S+ + A V R + + +D + + A G A Sbjct: 35 VLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEQVVWPASGWTARI 94 Query: 134 LQHELDHLNGILFIDHLS 151 +QHE+DHL G LFID + Sbjct: 95 IQHEMDHLQGCLFIDKMD 112 >gi|333026448|ref|ZP_08454512.1| putative formylmethionine deformylase [Streptomyces sp. Tu6071] gi|332746300|gb|EGJ76741.1| putative formylmethionine deformylase [Streptomyces sp. Tu6071] Length = 434 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 15/146 (10%) Query: 18 SRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + P+ + + +I ++D +L G+GL+A QIGV ++ Sbjct: 274 AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPW 333 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A + +NP +I S + + E C R R ITVR Sbjct: 334 GAPA---VTLLNPCVIAGSRETAEEYESCPGRSGPRTPTSRPNEITVRTTTLTGHPLTTT 390 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 LA + HE+DHL G+L L Sbjct: 391 YTQPLARLVHHEIDHLKGLLHPPRLP 416 >gi|290977842|ref|XP_002671646.1| predicted protein [Naegleria gruberi] gi|284085216|gb|EFC38902.1| predicted protein [Naegleria gruberi] Length = 297 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 60/157 (38%), Gaps = 34/157 (21%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVV--------------------------------ID 62 M +Y DG G++A Q+ R + I Sbjct: 119 MSLKVYHDDGTGISAPQLYHKIRYFIGTDRIFKATPKLKVVNAKQSGGFEEKKNATSEIF 178 Query: 63 LQD--HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +A+ + ++I+PKI+ S + EGCLS + + RS I V Y++ Sbjct: 179 DPDASYAYDVDLELYIDPKIVDKSVEMEREVEGCLSFKNEYLFLMRSKEIEVEYINMFGV 238 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 Q DG A QHE DHL GI D + K+D Sbjct: 239 KQRKTLDGFSARVFQHEFDHLEGINMFDRVVDKKKDR 275 >gi|68068927|ref|XP_676374.1| formylmethionine deformylase [Plasmodium berghei strain ANKA] gi|56496040|emb|CAH95054.1| formylmethionine deformylase, putative [Plasmodium berghei] Length = 122 Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 38/57 (66%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +VI+P+PILR+ S + + ++ NLI M + MY + GIGL+A Q+ + R++V + Sbjct: 62 IVIYPNPILRQKSEEVIYFDDNLKNLIRRMFKTMYESKGIGLSAPQVNINKRIIVWN 118 >gi|26554017|ref|NP_757951.1| peptide deformylase [Mycoplasma penetrans HF-2] gi|32363151|sp|Q8EVJ8|DEF_MYCPE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|26454025|dbj|BAC44355.1| polypeptide deformylase [Mycoplasma penetrans HF-2] Length = 186 Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 17/176 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53 +V +P++ + + + + ++I ML + ++ GIG+AA+Q+G Sbjct: 12 IVYDNNPVMHKPIEDVVFPLTKEDEHVISQMLSYVDASYEGEADKYDIRAGIGIAAIQLG 71 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIP-DYRADVKRSAFI 110 +++ I L D + + NPKII + S + EGCLS+ D++ R + + Sbjct: 72 CPKKIIYIHLDDKNGE-HKYLMANPKIIKESTSKMYLKNGEGCLSVKKDHKGLSIRKSIV 130 Query: 111 TVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 V+ +D + + A LLA C QHE+DH N + + ++ + K ++ Sbjct: 131 WVKGIDLFTNKEIEVKATDLLAACFQHEVDHNNNKFYYNRINESDPYYVEKNWEEI 186 >gi|317488618|ref|ZP_07947161.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325831659|ref|ZP_08164876.1| peptide deformylase [Eggerthella sp. HGA1] gi|316912270|gb|EFV33836.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325486530|gb|EGC88979.1| peptide deformylase [Eggerthella sp. HGA1] Length = 139 Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVV 60 + K LV + IL +V P ++ + D+++E + S DG LAA QIG ++ Sbjct: 1 MIKELVK-DEAILSQVCTPATTDDA---QVADDLVETLTSMDGAACLAANQIGATTCIIA 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM---DC 117 D P V NP+++ F EGCLS+ + + V R I V Y D Sbjct: 57 YLDDD----DQPHVMYNPRLLQALGAFKAV-EGCLSL-EADSKVTRFDRIKVGYSELVDG 110 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGIL 145 + + +G A +QH +DH G L Sbjct: 111 ELKPRKKDFNGWTAQIIQHGIDHCKGKL 138 >gi|318060496|ref|ZP_07979219.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG] Length = 426 Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 18/163 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLA 48 M + +++ P L + P+ + + +I ++D +L G+GL+ Sbjct: 262 MGELGVLLEGAPEL---AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLS 318 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 A QIGV ++ A + +NP++I S + + E C R Sbjct: 319 APQIGVPRAAALVQPPWGAPA---VTLLNPRVIAGSRETAEEYESCPGRLGPGTPTSRPN 375 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITVR LA + HE+DHL G+L HL Sbjct: 376 EITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLLHPPHLP 418 >gi|257790523|ref|YP_003181129.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] gi|257474420|gb|ACV54740.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] Length = 139 Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVV 60 + K LV + L +V P ++ + D+++E + S DG LAA QIG ++ Sbjct: 1 MIKELVK-DEATLSQVCTPATAEDA---QVADDLVETLTSMDGAACLAANQIGATTCIIA 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM---DC 117 D P V NP+++ F EGCLS+ + + V R I V Y D Sbjct: 57 YLDDD----DQPHVMYNPRLLQALGAFKAV-EGCLSL-EADSKVTRFDRIKVGYSELVDG 110 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGIL 145 + + +G A +QH +DH G L Sbjct: 111 ELKPRKKDFNGWTAQIIQHGIDHCKGKL 138 >gi|157825208|ref|YP_001492928.1| polypeptide deformylase [Rickettsia akari str. Hartford] gi|157799166|gb|ABV74420.1| Polypeptide deformylase [Rickettsia akari str. Hartford] Length = 100 Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%) Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 ++INP D EG S+ + V R I D N +G LA Sbjct: 3 KTIWINPSYKQVDIDKHEDYEGFFSVENATGPVARFKKIHCHAYDINGHQIQGITEGFLA 62 Query: 132 TCLQHELDHLNGILFIDHLSRLK---RDMITKKMSKLV 166 +QHE+DHLNG +F+D+++ K ++ +K K + Sbjct: 63 RVIQHEIDHLNGKVFLDYVAPEKIMTKEKYLEKRKKAM 100 >gi|110004337|emb|CAK98675.1| putative peptide deformylase 2 protein [Spiroplasma citri] Length = 192 Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 11/128 (8%) Query: 43 DGIGLAAVQIGVLYRLVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEG--CL 95 +GLAA QIG ++ I +++ INPKII S + +EG CL Sbjct: 61 PAVGLAAPQIGFNIKMYYIRIEETNDETGFKKIIEHAMINPKIIGKSAQIACIEEGEGCL 120 Query: 96 SIPD-YRADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 S+ V RS I V D Q I A A QHE HL G L+ D ++ Sbjct: 121 SVNGDKEGFVPRSFRIIVEGYDYLKQQQVTITARSYEAIVFQHEEAHLEGKLYYDLIN-- 178 Query: 154 KRDMITKK 161 K++ KK Sbjct: 179 KKEPWLKK 186 >gi|255974264|ref|ZP_05424850.1| peptide deformylase [Enterococcus faecalis T2] gi|255967136|gb|EET97758.1| peptide deformylase [Enterococcus faecalis T2] Length = 89 Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 1 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSD 85 ++ + + R INP II + Sbjct: 61 EIDEESGR---FELINPVIIEKKE 81 >gi|295106023|emb|CBL03566.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae 7-10-1-b] Length = 139 Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K LV + IL + ++ + + + L + LAA QIGV ++V Sbjct: 1 MIKELVT-DEAILSQPCETATAEDAVVAQDLLDTLASLDEAAC--LAANQIGVAKAVIVY 57 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NAQ 120 H + P V NP + + EGCL++ V R + V Y + + Sbjct: 58 ----HDENEQPHVMYNPVLKQALGAYKTV-EGCLTLESES-KVTRYERVKVVYDELVDGA 111 Query: 121 HQIIYAD--GLLATCLQHELDHLNGIL 145 D G A +QH +DH G L Sbjct: 112 LVSRKRDFTGWTAELIQHMIDHCKGKL 138 >gi|229815989|ref|ZP_04446311.1| hypothetical protein COLINT_03043 [Collinsella intestinalis DSM 13280] gi|229808448|gb|EEP44228.1| hypothetical protein COLINT_03043 [Collinsella intestinalis DSM 13280] Length = 153 Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60 + K LV + IL P +++I ++++ + S D LAA QIGV + Sbjct: 15 MIKELVK-DEAILSTPCEPATAADAEIAQ---DLVDTLLSIEDAACLAANQIGVTKAICA 70 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY---MDC 117 + N +V NPK++ F +E CL+ V R I V Y +D Sbjct: 71 L----ADDEGNTLVMYNPKVLFGMGAFKA-EESCLTREG-SVRVTRFVKIKVAYDELVDG 124 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGIL 145 + + A +QH DH G L Sbjct: 125 EFKPRKRDFVEWPAELIQHMCDHCQGKL 152 >gi|302766599|ref|XP_002966720.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii] gi|300166140|gb|EFJ32747.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii] Length = 277 Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 36/137 (26%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ DP LR + I + + L ML+V Y DG+GL+A Q+GV RL+V Sbjct: 144 IVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARLMVF---- 196 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 NP+ + +E R ++ D N + Sbjct: 197 -----------NPE-----GERGKGKED------------RY-RSELKAQDINGKKFGTA 227 Query: 126 ADGLLATCLQHELDHLN 142 G A +HE DHL Sbjct: 228 FRGWTAGIFRHEYDHLE 244 >gi|118096630|ref|XP_001232975.1| PREDICTED: similar to Component of oligomeric golgi complex 8 [Gallus gallus] Length = 677 Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 66 HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 AHR P + ++P + EG SI + A V R V +D N Sbjct: 575 RAHRIEPFPLRLLVSPALRVRDGRRGTAPEGGASIRGFAAGVPRRGAGHVSGVDENGDPV 634 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 A G A +QHE+DHL+G+LFID + Sbjct: 635 SWEATGWAARIVQHEMDHLDGVLFIDRMD 663 >gi|315931998|gb|EFV10951.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 327] Length = 74 Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 46/73 (63%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R++++ Sbjct: 1 MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60 Query: 62 DLQDHAHRKNPMV 74 ++ D + + Sbjct: 61 NIFDENDEQKKKI 73 >gi|207110973|ref|ZP_03245135.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1] Length = 72 Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + INPK I +Y+EGCLS+P + +V+R + + Y + A+ +++ A LLA Sbjct: 2 LEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAV 60 Query: 133 CLQHELDHLNGI 144 +QHE+DHLNG+ Sbjct: 61 AIQHEIDHLNGV 72 >gi|328955181|ref|YP_004372514.1| formylmethionine deformylase [Coriobacterium glomerans PW2] gi|328455505|gb|AEB06699.1| formylmethionine deformylase [Coriobacterium glomerans PW2] Length = 139 Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVV 60 + K LV +L + ++P ++ L ++L+ + S + G LAA QIG L + V Sbjct: 1 MIKELVR-DQALLSQPAKPATAEDA---ALAKDLLDTLASLEHAGCLAANQIGALKAICV 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NA 119 R P V NP+++ F S +E CL+ V R A + +++ + + Sbjct: 57 Y----SDERNEPHVMFNPRLL-FGLGASKMREECLT-KSEPVTVTRYAKVKIQFDELADG 110 Query: 120 --QHQIIYADGLLATCLQHELDHLNGIL 145 + + G A +QH +DH G L Sbjct: 111 ALKTRKRDFTGYTAQMIQHMIDHCRGRL 138 >gi|207108487|ref|ZP_03242649.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1] Length = 77 Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 44/72 (61%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNP 72 I+L ++ Sbjct: 61 INLPQEDGVQHK 72 >gi|196019297|ref|XP_002118957.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens] gi|190577546|gb|EDV18557.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens] Length = 395 Score = 84.0 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 15/106 (14%) Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR--------ADVKRSAFITVRYM 115 D + P F+NPKI ++ V EGCLS+P ++VKR I + Y+ Sbjct: 50 PDLVIERKPYFFLNPKIKLNHNNEIVLPEGCLSVPMESIFKEYNGNSNVKRPEVIEIEYI 109 Query: 116 DCNAQHQIIYADG-------LLATCLQHELDHLNGILFIDHLSRLK 154 + N + +I+ DG + C QHE DHL+G+LF+D L + K Sbjct: 110 NENLEKEIMKIDGSKDDYWKWFSRCAQHENDHLDGVLFVDRLEKEK 155 Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 15/93 (16%) Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP--------DYRADVKRSAFITVRYMD 116 D + P F+NPKI + EG S+P + +VKR+ I + Y++ Sbjct: 303 DLIIERKPYFFLNPKIKMDLTSRIILSEGTPSVPMEIIDKKYNGSTNVKRACNIELEYLN 362 Query: 117 CNAQHQIIYADG-------LLATCLQHELDHLN 142 + +++ G + C QHE D+L Sbjct: 363 EKLERKVMKIQGDRHDYWKWFSRCAQHEYDYLE 395 Score = 40.0 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 18/30 (60%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ML MY GIG+ A+Q+G R ++D+ Sbjct: 193 MLSTMYGFSGIGIGAMQVGAPIRAFIVDIP 222 >gi|302803460|ref|XP_002983483.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii] gi|300148726|gb|EFJ15384.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii] Length = 157 Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 17/110 (15%) Query: 3 KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 K +V DP+L +R + E + + N I +++ M +GLAA QIGV +++ Sbjct: 47 KLEIVQAGDPVLHEAAREVLHSEVSSDTVQNTIQGLIDAMREAPAVGLAAPQIGVPLQII 106 Query: 60 VID--------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL 95 V++ L +V INP + + + + EGCL Sbjct: 107 VLEDTAEYISYVSRDEALSQQRKPFELLVIINPILRPTTSATARFFEGCL 156 >gi|302335150|ref|YP_003800357.1| formylmethionine deformylase [Olsenella uli DSM 7084] gi|301318990|gb|ADK67477.1| formylmethionine deformylase [Olsenella uli DSM 7084] Length = 139 Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 13/137 (9%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVVIDLQDHAHRKN 71 +L + ++ + ++++ M S + +G LAA QIGV +++ D Sbjct: 11 VLSQRCERATAEDAVVAW---DLIDTMDSLEDVGCLAANQIGVAKQVIAYRDDDQVVH-- 65 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NA--QHQIIYADG 128 V NP+I+ S +EGCL+ V R A + V + + + + G Sbjct: 66 --VMYNPRIM-MGLGASKLEEGCLTREG-TVRVTRYAKVKVSFDELVEGSLKARRRDYTG 121 Query: 129 LLATCLQHELDHLNGIL 145 +A +QH DH NG L Sbjct: 122 WVAEMIQHMCDHCNGKL 138 >gi|145509567|ref|XP_001440722.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124407950|emb|CAK73325.1| unnamed protein product [Paramecium tetraurelia] Length = 237 Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 6/172 (3%) Query: 1 MVKKPLVIFPDPI---LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +++F D + L N + ++ M LAA Q+G+ Sbjct: 1 MA--NIIVFGDKLSNALFSKCIYYGAFNKRFYSKVNQMKLAAVDKRIRILAANQVGLEQN 58 Query: 58 LVVIDLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L ++ Q V INPKI+ S++ E +S P ++A V R I V Y D Sbjct: 59 LFIMLPQSSKMIPSEYKVIINPKILKISNEVIENTEESISFPQFKAKVNRYKTIFVSYDD 118 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + GL + Q +D + GI I ++ + + + K +L Sbjct: 119 KKGKTVEEELKGLESIWYQQAIDQVMGIPCISWIASQGKVELKPEYQKQAEL 170 >gi|209732808|gb|ACI67273.1| Peptide deformylase, mitochondrial precursor [Salmo salar] Length = 112 Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 +FIN ++ +QE C SI + A V + V ++ A+ G Sbjct: 22 IFINHQLRVLDGRTVKFQEACESISGFSATVPHYLSVEVSGLNEKAEPVTWQVSGWPVRN 81 Query: 134 LQHELDHLNGILFIDHLS 151 LQHE+DHL+G+ +ID + Sbjct: 82 LQHEMDHLDGVWYIDRMD 99 >gi|313239302|emb|CBY14250.1| unnamed protein product [Oikopleura dioica] Length = 1132 Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 26/169 (15%) Query: 8 IFPDPILRRVSRPI-------------EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54 + DP+LR+ + E N IM + M M++ G + A Q+G+ Sbjct: 13 LIGDPVLRQPAADFDVNVYNSVDMKTFENHNPAIMKSLAKME--MFAQYGWVITAPQVGL 70 Query: 55 LYRLVVI----DLQDHA------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +++++ L D + VF NP+I +++ + E LSIP + Sbjct: 71 PIKIMLVQLHLGLDDDGFTIKGTDKTKNYVFANPEIRPLTNEKAFSIESSLSIPALSGVL 130 Query: 105 KRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 +R I + D A+ + + + +Q+ +D LNG++FID ++ Sbjct: 131 ERHQLIELTAYDLAARRVVKMTLSPPDSFMVQNAVDQLNGVMFIDKVTD 179 >gi|307706187|ref|ZP_07643005.1| polypeptide deformylase family protein [Streptococcus mitis SK321] gi|307618447|gb|EFN97596.1| polypeptide deformylase family protein [Streptococcus mitis SK321] Length = 108 Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 45/146 (30%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60 K ++ L +VS+P + + + L ++ + + + +GLAA IGV R+++ Sbjct: 6 VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANREICVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +L P+V NP +++ + +EGCLS+ Sbjct: 58 FNLG-----LVPVVMFNPVLLSSEGAYET-EEGCLSL----------------------- 88 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 G A QHELDHL G + Sbjct: 89 ------TGFPAQICQHELDHLEGRII 108 >gi|295108734|emb|CBL22687.1| N-formylmethionyl-tRNA deformylase [Ruminococcus obeum A2-162] Length = 77 Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 +V NP I++ D + +EGCLS+ R R I V Y D N + + G A Sbjct: 6 VVMFNPVIVSKRDMYET-EEGCLSLDGVR-KTTRYQEIEVEYYDFNWKKKRQRLSGWTAQ 63 Query: 133 CLQHELDHLNGILF 146 QHE+DHL+G + Sbjct: 64 ICQHEIDHLSGKII 77 >gi|77409500|ref|ZP_00786189.1| polypeptide deformylase [Streptococcus agalactiae COH1] gi|77171884|gb|EAO75064.1| polypeptide deformylase [Streptococcus agalactiae COH1] Length = 163 Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 15/123 (12%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + KP+V D L++ S+ + + ++L ++ + +++ +G+AA IG L R+ Sbjct: 1 MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSLKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++I++ +V NP ++ SD + +E CLS+ R+ +R IT+ Y D N Sbjct: 56 IIINVGITN-----LVMFNPVLVAKSDPYET-EESCLSLVGCRS-TQRYHHITISYRDIN 108 Query: 119 AQH 121 + Sbjct: 109 XER 111 >gi|165933262|ref|YP_001650051.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|165908349|gb|ABY72645.1| peptide deformylase [Rickettsia rickettsii str. Iowa] Length = 119 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 35 IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 94 Query: 66 HAHRKNPMVFINPKIITFSDDFSVY 90 + ++ +P+VFINP I FS++ + Sbjct: 95 N-NKSSPIVFINPDITYFSEETQTF 118 >gi|149184142|ref|ZP_01862470.1| peptide deformylase [Bacillus sp. SG-1] gi|148848148|gb|EDL62470.1| peptide deformylase [Bacillus sp. SG-1] Length = 86 Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 87 FSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 + EGCLS+ V R + +T++ MD + I GL + +QHE+DHLNG++ Sbjct: 5 YLTSGEGCLSVDRQVPGYVPRYSRVTIKGMDIDGNPVKIRLKGLPSIVMQHEIDHLNGVM 64 Query: 146 FIDHLS 151 F DH+ Sbjct: 65 FYDHID 70 >gi|157828546|ref|YP_001494788.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801027|gb|ABV76280.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 94 Score = 79.3 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVY 90 + ++ +P+VFINP I FS++ + Sbjct: 70 N-NKSSPIVFINPDITYFSEETQTF 93 >gi|9957264|gb|AAG09295.1|AF177768_1 ORF260 [Trypanosoma brucei] gi|261335512|emb|CBH18506.1| polypeptide deformylase, putative [Trypanosoma brucei gambiense DAL972] Length = 260 Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 5/99 (5%) Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109 + ++ ++ H + N V++NP + + D S+ E C+S A V R Sbjct: 92 HWDAAIVLIKGHPNEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQS 151 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 IT +D + DG+ A CL HELDHL+G +D Sbjct: 152 ITCSGLDEYGNEKTEVLDGMRARCLMHELDHLSGKTILD 190 >gi|290476474|ref|YP_003469379.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] gi|289175812|emb|CBJ82615.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] Length = 62 Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 39/59 (66%) Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 V +D + + ++ ++ L+ +QHE+DHLNGI+FID+LS LKR M KK+ K + + Sbjct: 2 KVEALDRHGKAMVVESEDFLSIVMQHEIDHLNGIVFIDYLSPLKRQMALKKVKKFLSNK 60 >gi|74025884|ref|XP_829508.1| polypeptide deformylase [Trypanosoma brucei TREU927] gi|70834894|gb|EAN80396.1| polypeptide deformylase, putative [Trypanosoma brucei] Length = 260 Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 5/99 (5%) Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109 + ++ ++ H + N V++NP + + D S+ E C+S A V R Sbjct: 92 HWDAAIVLIKGHPNEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQS 151 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 IT +D + DG+ A CL HELDHL+G +D Sbjct: 152 ITCSGLDEYGNEKTEVLDGMRARCLMHELDHLSGRTILD 190 >gi|38141771|dbj|BAD00707.1| putative polypeptide deformylase [Streptococcus equi subsp. zooepidemicus] Length = 152 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 25/135 (18%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 ++ +P LR V++ +E ++ D + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPD- 99 I V R++ + + NP V NPKI++ S D EGCLS+ Sbjct: 78 IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRY 114 V R A +TV Y Sbjct: 138 VEGYVVRHARVTVEY 152 >gi|322494221|emb|CBZ29518.1| putative polypeptide deformylase-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 271 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109 + VI ++ + K V++NP + + D +V E C+S A V R Sbjct: 103 HWDAAVILIKGNPDEKEYEVWVNPLVPGYDDRDAVAPMYGMWENCISCGTATAWVVRPQR 162 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 IT D + H++ DG+ A CL HELDHL G Sbjct: 163 ITCSGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200 >gi|139438035|ref|ZP_01771588.1| Hypothetical protein COLAER_00575 [Collinsella aerofaciens ATCC 25986] gi|133776232|gb|EBA40052.1| Hypothetical protein COLAER_00575 [Collinsella aerofaciens ATCC 25986] Length = 143 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 15/151 (9%) Query: 1 MVKKPL--VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYR 57 M ++ + + + IL + + + ++++ + S D G LAA QIGV + Sbjct: 1 MEERMIKELCHDEAILSQRCEVATVEDESVAQ---DLIDTIKSLDDAGCLAANQIGVTKK 57 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY--- 114 + V P V NP+++ F S +E CL+ + R V + Sbjct: 58 VCVY----LDDAGEPHVLYNPRLV-FGLGASKMEESCLTHEEVTKS-TRYIKCKVAFDQI 111 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 +D + G A +QH +DH G L Sbjct: 112 VDGKMKECRRDYAGFEAQMIQHMIDHCLGKL 142 >gi|210630312|ref|ZP_03296375.1| hypothetical protein COLSTE_00259 [Collinsella stercoris DSM 13279] gi|210160520|gb|EEA91491.1| hypothetical protein COLSTE_00259 [Collinsella stercoris DSM 13279] Length = 139 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60 + K LV + IL E + ++ ++++ + S D LAA QIGV +V Sbjct: 1 MIKELV-HDEAILSTPC---EVATAADADVAQDLVDTLLSIEDAACLAANQIGVTKAIVA 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY---MDC 117 + N V NPK++ + +E CL+ V R A I V Y +D Sbjct: 57 L----ADDEGNAHVMFNPKVLFGMGAYKA-EESCLTREG-SVKVTRFAKIKVSYDELVDG 110 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGIL 145 + + A +QH DH NG L Sbjct: 111 ELKPRKRDFVEWAAELIQHMCDHCNGKL 138 >gi|157873892|ref|XP_001685446.1| polypeptide deformylase-like protein [Leishmania major strain Friedlin] gi|68128518|emb|CAJ08650.1| putative polypeptide deformylase-like protein [Leishmania major strain Friedlin] Length = 271 Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109 + VI ++ + V++NP + + D +V E C+S A V R Sbjct: 103 HWDAAVILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQR 162 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 IT D + H++ DG+ A CL HELDHL G Sbjct: 163 ITCSGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200 >gi|309805350|ref|ZP_07699400.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c] gi|308165350|gb|EFO67583.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c] Length = 95 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 92 EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 EGCLS+ D + V R+ + ++Y + + + I G A HE+DHLNG LF D + Sbjct: 20 EGCLSVDKDIQGYVPRAYKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRI 79 Query: 151 SR 152 + Sbjct: 80 DK 81 >gi|322501785|emb|CBZ36867.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 271 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109 + VI ++ + V++NP + + D +V E C+S A V R Sbjct: 103 HWDAAVILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQR 162 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 +T D + H++ DG+ A CL HELDHL G Sbjct: 163 VTCSGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200 >gi|146096471|ref|XP_001467816.1| polypeptide deformylase-like protein [Leishmania infantum JPCM5] gi|134072182|emb|CAM70883.1| putative polypeptide deformylase-like protein [Leishmania infantum JPCM5] Length = 271 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109 + VI ++ + V++NP + + D +V E C+S A V R Sbjct: 103 HWDAAVILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQR 162 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 +T D + H++ DG+ A CL HELDHL G Sbjct: 163 VTCSGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200 >gi|154343115|ref|XP_001567503.1| polypeptide deformylase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064835|emb|CAM42941.1| putative polypeptide deformylase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 271 Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109 + V+ ++ + V++NP + + D +V E C+S A V R Sbjct: 103 HWDAAVLLIKSNPDEVEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQR 162 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 IT R + + + ++ DG+ A CL HELDHL G Sbjct: 163 ITCRGYNEHGREKVQVLDGMRARCLMHELDHLMGKTIF 200 >gi|224010171|ref|XP_002294043.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220970060|gb|EED88398.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 549 Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 75/225 (33%), Gaps = 79/225 (35%) Query: 5 PLVIFPDPILRRVSRPIE----KINSDIMNL---IDNMLEVMYSTDGIGLAAVQIGVLYR 57 P+ +PDPILR S P+ + + L + +GLAA Q GV Sbjct: 155 PMGRWPDPILRHSSSPVSSCVFNNDHQLKQLQLVARALRNTARKEGAVGLAAQQCGVDGS 214 Query: 58 LVVID------------------------------------LQDHAHRKNPMVFIN---- 77 LV ID + + + IN Sbjct: 215 LVFIDGIKKTHRSINQQLEMSFGELLDGAFGQRSWRNSKKEVSGEGAYDDDIFAINKLSL 274 Query: 78 -----------------PKIITFS--DDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDC 117 P+I+ S + V+ E CL +P +RA + R A +T+ Y Sbjct: 275 TKQQPQREAEGGVFLVNPRIVHRSTESEMLVWTEECLVLPPVFRATLVRDAEVTIEYESL 334 Query: 118 N------------AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I G LA C QHE+DH G+L +DH+ Sbjct: 335 ETLDESSPGDSLCGVTKQITLKGELARCAQHEMDHDRGVLIVDHV 379 >gi|289676937|ref|ZP_06497827.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 79 Score = 73.9 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQDHAHRK 70 V+ + + Sbjct: 61 VIFGFERNERYP 72 >gi|299116828|emb|CBN74940.1| dubious peptide deformylase [Ectocarpus siliculosus] Length = 97 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 V+R ++ V ++ + A QHE DHL+G ++IDHLS +R+ + + Sbjct: 25 QVERRNWVKVEAVNAKGKKVKKKYTDWTARIFQHEYDHLDGTVYIDHLSPPEREKVQPVL 84 Query: 163 SKLV 166 KLV Sbjct: 85 DKLV 88 >gi|255018922|ref|ZP_05291048.1| peptide deformylase [Listeria monocytogenes FSL F2-515] Length = 65 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V RS +T+ D N + G A +QHE+DHLNGI+F DH+++ Sbjct: 1 GYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 52 >gi|213425785|ref|ZP_03358535.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213618713|ref|ZP_03372539.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 53 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 27/49 (55%), Positives = 35/49 (71%) Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 1 NPFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 49 >gi|145530309|ref|XP_001450932.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124418565|emb|CAK83535.1| unnamed protein product [Paramecium tetraurelia] Length = 282 Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 9/146 (6%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH---- 66 D L + + ++S ++N+L M + + L+A Q+GV R I Q Sbjct: 34 DDCLFYSADLVMNLSSRKKKDMNNLLFTMQTLEIPYLSANQVGVEDRYFGIMFQKQNFKW 93 Query: 67 ----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 ++ +NP +++ S+ S+ E + P R+ ++R I + + Q Sbjct: 94 SLIEEKNLEKLLCVNPLVVSVSETTSIDWETNICFPFIRSQIERYDRIRLHFQTLE-DEQ 152 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 +G A +Q +D LNG ID Sbjct: 153 EFEFEGFNARVVQQAIDSLNGYQIID 178 >gi|289677569|ref|ZP_06498459.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 47 Score = 72.0 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL 47 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGL Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGL 47 >gi|146318043|ref|YP_001197755.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33] gi|145688849|gb|ABP89355.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33] Length = 70 Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP II+ + + +EGCLS+ R R I V + D + + + A + Sbjct: 1 MYNPVIISKAKPYQT-EEGCLSLEGTR-PTTRYQEIEVEFFDASWKKISLKLTDFQAQIV 58 Query: 135 QHELDHLNGILF 146 QHELDHL GI+ Sbjct: 59 QHELDHLEGIII 70 >gi|302765893|ref|XP_002966367.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii] gi|300165787|gb|EFJ32394.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii] Length = 340 Score = 71.6 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 49/133 (36%), Gaps = 42/133 (31%) Query: 21 IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 I + ++ L ML+V Y DGIGL Q+GV RL+V NP+ Sbjct: 62 INSFDDNVKKL---MLDVTYRRDGIGLLTPQLGVNARLMVF---------------NPE- 102 Query: 81 ITFSDDFSVYQEGCLSIPDYRADVKRSA-FITVRYMDCNAQHQIIYADGLLATCLQHELD 139 R KR ++ D N + A +HE D Sbjct: 103 ------------------GERGKGKRDRYRSELKSQDINGKK----YGSWTARIFRHEYD 140 Query: 140 HLNGILFIDHLSR 152 HL G+L+ID ++ Sbjct: 141 HLEGVLYIDQMTP 153 >gi|146076416|ref|XP_001462921.1| metalloprotease-like protein [Leishmania infantum] gi|134067002|emb|CAM65107.1| metalloprotease-like protein [Leishmania infantum JPCM5] gi|322496349|emb|CBZ31420.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 393 Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 19/123 (15%) Query: 47 LAAVQIGVLYRLVV----------IDLQDHAHRKNP-------MVFINPKIITFSDDFSV 89 ++A Q G ++ ++L + A R + F K+ + Sbjct: 151 MSAPQTGWNVQMFTLFDNSVFINPVNLDEEAWRAEAAQQGMSWVAFEEEKMRELRTEGLT 210 Query: 90 Y--QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 E C S ++R + VR +D + + + D + A HELDHL G+LF Sbjct: 211 GFAWEPCASSGFLLHYIERPLTVRVRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFT 270 Query: 148 DHL 150 + Sbjct: 271 RRV 273 >gi|258513851|ref|YP_003190073.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] gi|257777556|gb|ACV61450.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] Length = 74 Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 9/81 (11%) Query: 1 MVKKPLVIF-PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ + + ILR+ +R IEK + I+ + NM E MY+ + GLAA Q+ +L RLV Sbjct: 1 MALRNIMNYQTNDILRKKTRTIEKFYNRILTSLKNMAETMYNANETGLAATQVAILRRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKI 80 VID+ + INP I Sbjct: 61 VIDVGTGS--------INPVI 73 >gi|71654685|ref|XP_815957.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL Brener] gi|70881052|gb|EAN94106.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi] Length = 260 Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%) Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109 + V+ ++ H + V+++P + + S+ E C+S A V R Sbjct: 92 HWDATVVLIKGHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQC 151 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 +T D + DG+ A CL HELDHL+G + Sbjct: 152 VTCSGWDEYGNEKTELLDGMRARCLMHELDHLHGKTIL 189 >gi|167950137|ref|ZP_02537211.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 80 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQ 51 M ++ PDP L++ S +E+ + + ID++ E + +G+AA Q Sbjct: 1 MAILEILKLPDPRLKQPSELVEQFDDALRAFIDDLEETRVNGPAAVGIAAPQ 52 >gi|71413918|ref|XP_809080.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL Brener] gi|70873406|gb|EAN87229.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi] Length = 260 Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%) Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109 + V+ ++ H + V+++P + + S+ E C+S A V R Sbjct: 92 HWDATVVLIKSHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQS 151 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 +T D + DG+ A CL HELDHL+G + Sbjct: 152 VTCSGWDEYGNEKTELLDGMRARCLMHELDHLHGKTIL 189 >gi|34101051|gb|AAQ57593.1| putative peptide deformylase [Trypanosoma brucei] Length = 366 Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 35/133 (26%) Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINP---------------------------K 79 L A +IG ++ + + VFINP + Sbjct: 114 LCAPKIGWNVQMFTL--------FDGTVFINPINLDALEVEEIAKQKSITFVEAEALWME 165 Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 E C S ++R + + VR + + + D + A HELD Sbjct: 166 KKRREGKTCFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELD 225 Query: 140 HLNGILFIDHLSR 152 HLNGILF + Sbjct: 226 HLNGILFTRRIPD 238 >gi|71745056|ref|XP_827158.1| metalloprotease-like protein [Trypanosoma brucei TREU927] gi|70831323|gb|EAN76828.1| metalloprotease-like protein [Trypanosoma brucei] Length = 366 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 35/133 (26%) Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINP---------------------------K 79 L A +IG ++ + + VFINP + Sbjct: 114 LCAPKIGWNVQMFTL--------FDGTVFINPINLDALEVEEIAKQKSITFVEAEALWME 165 Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 E C S ++R + + VR + + + D + A HELD Sbjct: 166 KKRREGKTCFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELD 225 Query: 140 HLNGILFIDHLSR 152 HLNGILF + Sbjct: 226 HLNGILFTRRIPD 238 >gi|261331378|emb|CBH14372.1| metalloprotease-like protein [Trypanosoma brucei gambiense DAL972] Length = 366 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 35/133 (26%) Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINP---------------------------K 79 L A +IG ++ + + VFINP + Sbjct: 114 LCAPKIGWNVQMFTL--------FDGTVFINPINLDTLEVEEIAKQKSITFVEAEALWME 165 Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 E C S ++R + + VR + + + D + A HELD Sbjct: 166 KKRREGKTCFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELD 225 Query: 140 HLNGILFIDHLSR 152 HLNGILF + Sbjct: 226 HLNGILFTRRIPD 238 >gi|322816071|gb|EFZ24514.1| metalloprotease-like protein, putative [Trypanosoma cruzi] Length = 366 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 39/151 (25%) Query: 33 DNMLEVMYSTDGI----GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF----- 83 M+E + + L A QIG ++ + + VFINP + Sbjct: 99 AEMIERVRAARQYYQYPSLCAPQIGWNVQMFTL--------FDGSVFINPVNLDLLEVEA 150 Query: 84 ----------------------SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 E C S ++R A + +R + + Sbjct: 151 AGTRSGMPIAEAEAQWVASCRREGKTCFAWEPCASCCFLMHYIERPATVRIRAIGADGHP 210 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + + A HELDHL+G+LF + Sbjct: 211 FEVTLEKMRARMALHELDHLSGVLFTRRIPD 241 >gi|71419099|ref|XP_811066.1| metalloprotease-like protein [Trypanosoma cruzi strain CL Brener] gi|70875688|gb|EAN89215.1| metalloprotease-like protein, putative [Trypanosoma cruzi] Length = 366 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 39/151 (25%) Query: 33 DNMLEVMYSTDGI----GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF----- 83 M+E + + L A QIG ++ + + VFINP + Sbjct: 99 AEMIERVRAARQYYQYPSLCAPQIGWNVQMFTL--------FDGSVFINPVNLDLLEVEA 150 Query: 84 ----------------------SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 E C S ++R A + +R + + Sbjct: 151 AGSRSGMPIAEAEAQWVASCRREGKTCFAWEPCASCCFLMHYIERPATVRIRAIGADGHP 210 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + + A HELDHL+G+LF + Sbjct: 211 FEVTLEKMRARMALHELDHLSGVLFTRRIPD 241 >gi|321399682|emb|CAC22626.2| putative peptide deformylase [Leishmania major strain Friedlin] Length = 501 Score = 68.2 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 22/168 (13%) Query: 5 PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60 P++ P L R+ + ++ + LI + E + ++A Q G ++ Sbjct: 214 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVREARHYYQYPSMSAPQTGWNVQMFTL 273 Query: 61 ---------IDLQDHAHRKNP-------MVFINPKIITFSDDFSVY--QEGCLSIPDYRA 102 ++L + R + F K+ + E C S Sbjct: 274 FDNSVFINPVNLDEEVWRAEAARQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFLLH 333 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++R + +R +D + + + D + A HELDHL G+LF + Sbjct: 334 YIERPLTVRMRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFTRRV 381 >gi|76363764|ref|XP_888591.1| hypothetical protein [Leishmania major strain Friedlin] Length = 501 Score = 68.2 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 22/168 (13%) Query: 5 PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60 P++ P L R+ + ++ + LI + E + ++A Q G ++ Sbjct: 214 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVREARHYYQYPSMSAPQTGWNVQMFTL 273 Query: 61 ---------IDLQDHAHRKNP-------MVFINPKIITFSDDFSVY--QEGCLSIPDYRA 102 ++L + R + F K+ + E C S Sbjct: 274 FDNSVFINPVNLDEEVWRAEAARQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFLLH 333 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++R + +R +D + + + D + A HELDHL G+LF + Sbjct: 334 YIERPLTVRMRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFTRRV 381 >gi|169840242|ref|ZP_02873430.1| Peptide deformylase [candidate division TM7 single-cell isolate TM7a] Length = 71 Score = 68.2 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ P LR R ++++ ++ +D M+ +M +G+GLAA Q+ + R V++ Sbjct: 4 IVLYGHPTLREK-RKSDEVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLEHDG 62 Query: 66 HAHR 69 + Sbjct: 63 ILKK 66 >gi|239792061|dbj|BAH72415.1| ACYPI003516 [Acyrthosiphon pisum] Length = 119 Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 16/92 (17%) Query: 6 LVIFPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+LR + P+ EKI ++ NLI M +M ++ IGLAA Q+G+ +++ VI Sbjct: 27 VVQIGDPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIH 86 Query: 63 LQDHAH-------------RKNPMVFINPKII 81 +H V+INP+++ Sbjct: 87 FPRPSHYFSKEEILLKGMEHVENHVWINPELM 118 >gi|322488070|emb|CBZ23315.1| unnamed protein product [Leishmania mexicana MHOM/GT/2001/U1103] Length = 401 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 22/168 (13%) Query: 5 PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60 P++ P L R+ + ++ + LI + E + ++A Q G ++ Sbjct: 114 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVKEARHYYQYPSMSAPQTGWNVQMFTL 173 Query: 61 ---------IDLQDHAHRKNP-------MVFINPKIITFSDDFSVY--QEGCLSIPDYRA 102 ++L + A R + F K+ + E C S Sbjct: 174 FDNSVFINPVNLDEVAWRAEAAQQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFLLH 233 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++R + VR +D + + + D + A HELDHL G+LF + Sbjct: 234 YIERPLTVRVRALDEHGKAFTVTLDKMRARMSLHELDHLQGVLFTRRV 281 >gi|318077239|ref|ZP_07984571.1| hypothetical protein SSA3_11078 [Streptomyces sp. SA3_actF] Length = 92 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 31/79 (39%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + +NP++I S + + E C R ITVR LA Sbjct: 6 VTLLNPRVIAGSRETAEEYESCPGRLGPGTPTSRPNEITVRTTTLTGHPLTTTYTQPLAR 65 Query: 133 CLQHELDHLNGILFIDHLS 151 + HE+DHL G+L HL Sbjct: 66 LVHHEIDHLKGLLHPPHLP 84 >gi|71422988|ref|XP_812306.1| metalloprotease-like protein [Trypanosoma cruzi strain CL Brener] gi|70877072|gb|EAN90455.1| metalloprotease-like protein, putative [Trypanosoma cruzi] Length = 366 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 35/133 (26%) Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF----------------------- 83 L A QIG ++ + + VFINP + Sbjct: 117 LCAPQIGWNVQMFTL--------FDGSVFINPVNLDLLELEAAGSRSGMPIAEAEAQWVA 168 Query: 84 ----SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 E C S ++R A + +R + + + + + A HELD Sbjct: 169 SCRREGKTCFAWEPCASCCFLMHYIERPATVRIRAIGADGHPFEVTLEKMRARMALHELD 228 Query: 140 HLNGILFIDHLSR 152 HL G+LF + Sbjct: 229 HLGGVLFTRRIPD 241 >gi|169838490|ref|ZP_02871678.1| hypothetical protein cdivTM_15541 [candidate division TM7 single-cell isolate TM7a] Length = 118 Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 S+F + + + + I A+G LA LQHE+DH NGI+FIDH+ + K+D K Sbjct: 32 SSFYENKIIRTDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 84 >gi|149378482|ref|ZP_01896166.1| peptide deformylase [Marinobacter algicola DG893] gi|149357233|gb|EDM45771.1| peptide deformylase [Marinobacter algicola DG893] Length = 43 Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 27/43 (62%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG 44 + ++ +PDP LR +++P++++ + LID+M E MY G Sbjct: 1 MILDILEYPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPG 43 >gi|322821869|gb|EFZ28075.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi] Length = 260 Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%) Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109 + V+ ++ H + V+++P + + S+ E C+S A V R Sbjct: 92 HWDATVVLIKSHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQS 151 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 +T D + G+ A CL HELDHL+G + Sbjct: 152 VTCSGWDEYGNEKTELLGGMRARCLMHELDHLHGKTIL 189 >gi|295838352|ref|ZP_06825285.1| formylmethionine deformylase [Streptomyces sp. SPB74] gi|295826974|gb|EDY42785.2| formylmethionine deformylase [Streptomyces sp. SPB74] Length = 289 Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 15/135 (11%) Query: 18 SRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +RP+ + + I ++D +L + +G+GL+A QIG+ ++ Sbjct: 136 ARPVTEFDLPREREEATRTVRAIEAVLDRVLRLCPFPEGVGLSAPQIGIPRAAALVQPPW 195 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 A ++ +NP++ S + + C P R V+ ITV Sbjct: 196 GAPA---VILLNPRVTATSRETTESVATCPGHPAPRPPVRHPRDITVATTTLTGHPLSAT 252 Query: 126 ADGLLATCLQHELDH 140 L+ + HE+ H Sbjct: 253 YTHPLSHLVHHEIGH 267 >gi|330952314|gb|EGH52574.1| peptide deformylase [Pseudomonas syringae Cit 7] Length = 45 Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 26/45 (57%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI 45 M ++ FPD LR +++P+ ++ I L+D+M E MY GI Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGI 45 >gi|90961343|ref|YP_535259.1| peptide deformylase [Lactobacillus salivarius UCC118] gi|90820537|gb|ABD99176.1| Peptide deformylase [Lactobacillus salivarius UCC118] Length = 103 Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 13/114 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59 + + + IL + S P K + + ++ ++++ + + +G+AA IG ++ Sbjct: 1 MIRDI-NHDVKILSKKSTPASKND---IAIVQDLVDTLNYHRDHCVGMAANMIGKNKCII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + INP I S +S EGCLS+ R + R I V Sbjct: 57 ACQFGPLI-----VAMINPVITKKSQKYSTS-EGCLSLTGER-ETTRFNKIEVS 103 >gi|324017857|gb|EGB87076.1| conserved domain protein [Escherichia coli MS 117-3] Length = 48 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 35/45 (77%) Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 1 EADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 45 >gi|149411900|ref|XP_001510213.1| PREDICTED: similar to bromodomain adjacent to zinc finger domain, 1A [Ornithorhynchus anatinus] Length = 200 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 101 RADVKRSAFITV--RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D R+ V ++D N + + A G A +QHE+DHL G L+ID + Sbjct: 134 YGDAGRARRTDVPGHWLDENGEPVVWQASGWPARIIQHEMDHLQGSLYIDKMD 186 >gi|326927579|ref|XP_003209969.1| PREDICTED: conserved oligomeric Golgi complex subunit 8-like, partial [Meleagris gallopavo] Length = 600 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +D N A G A +QHE+DHL+G+LFID + Sbjct: 549 GVDENGDPVSWEATGWAARIVQHEMDHLDGVLFIDRMD 586 >gi|169837919|ref|ZP_02871107.1| Peptide deformylase [candidate division TM7 single-cell isolate TM7a] Length = 85 Score = 63.9 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 45 IGLAAVQIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 LAAVQ+ L R+V++ + D+ + INP+II + + + EGCLS+ Sbjct: 16 AALAAVQVDKLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGK 75 Query: 104 VKRSAFITVR 113 V R + V Sbjct: 76 VPRYNKVRVS 85 >gi|118382105|ref|XP_001024212.1| polypeptide deformylase family protein [Tetrahymena thermophila] gi|89305979|gb|EAS03967.1| polypeptide deformylase family protein [Tetrahymena thermophila SB210] Length = 1144 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 14/135 (10%) Query: 21 IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--DLQDHA----------H 68 + ++ I + I + + G +A+Q G + R V+ +++D Sbjct: 910 VPHVSLQIKSQIRELKKFASENQLTGFSAIQAGYIDRFFVLSKEVKDQQQSTWKTQKLYP 969 Query: 69 RKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 +INPKI+ + + E + P A V R + VRY D + Sbjct: 970 TDQYKTYINPKIVEICQNGQQNNEIELSPTFPFLDAYVSRYLSVKVRYYDEDMDEVEETI 1029 Query: 127 DGLLATCLQHELDHL 141 + QH D L Sbjct: 1030 QNFESRAFQHFYDFL 1044 >gi|167947582|ref|ZP_02534656.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 58 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + +G A LQHE+DHL+GILF+D L + D+ +K+ Sbjct: 1 DPYGEPLEFDMEGYEARALQHEVDHLDGILFVDRLVSRRTDLFQRKV 47 >gi|153880447|ref|ZP_02004994.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS] gi|152063089|gb|EDN65006.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS] Length = 47 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/33 (60%), Positives = 27/33 (81%) Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + +G+LA C+QHE+DHLNG LF+D+LS LKR Sbjct: 1 MTTEGVLAVCIQHEIDHLNGKLFVDYLSSLKRQ 33 >gi|213027380|ref|ZP_03341827.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 44 Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/40 (57%), Positives = 31/40 (77%) Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +LA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 1 MLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 40 >gi|260221951|emb|CBA31028.1| hypothetical protein Csp_C26500 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 48 Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 24/46 (52%), Positives = 33/46 (71%) Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LKR+ I KM K + Sbjct: 1 MEADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIKAKREE 46 >gi|255633238|gb|ACU16975.1| unknown [Glycine max] Length = 125 Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 23/40 (57%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI 45 +V +PDP LR ++ I + + L+ M +VMY DGI Sbjct: 77 IVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKADGI 116 >gi|118371117|ref|XP_001018758.1| conserved hypothetical protein [Tetrahymena thermophila] gi|89300525|gb|EAR98513.1| conserved hypothetical protein [Tetrahymena thermophila SB210] Length = 1142 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 27/172 (15%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI------NP 78 + I +M + + L++ QIG+ +VV + ++ ++ NP Sbjct: 872 TKQLKQSILDMKKTAFVYQLPYLSSNQIGIEKSVVVFSNKIVENKYYDSEYVKFDTYLNP 931 Query: 79 KIITFS---------------------DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 KI S E C S + V+R I ++YMD Sbjct: 932 KITKISNVINKQSNIFFTIYHQSLFSKKQKLEDFEECTSTFGIESQVERHTDILIQYMDE 991 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G + Q +D +G L I ++ I++K L + Sbjct: 992 EGNMKEEEMSGFKSRLFQQAIDLQSGKLPIKWNISKGKNRISEKYLNLQNAK 1043 >gi|309805322|ref|ZP_07699372.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c] gi|308165322|gb|EFO67555.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c] Length = 100 Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 14/89 (15%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51 +V + +LR+V + + +N L ++M++ + ++ G+GLAA Q Sbjct: 6 DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQ-DHAHRKNPMVFINPK 79 +G ++ + + D + F+NPK Sbjct: 66 VGESVQMAALLVPDDQGNIIFKETFVNPK 94 >gi|169837912|ref|ZP_02871100.1| hypothetical protein cdivTM_12604 [candidate division TM7 single-cell isolate TM7a] Length = 68 Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 33/56 (58%) Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++Y++ N + + + + A QHE DH+ GILF D LS L + ++ KK+ L + Sbjct: 1 MKYLNENGEEVVEELEEMWARAFQHEFDHIEGILFTDRLSILNKRLVAKKLDVLKK 56 >gi|146320223|ref|YP_001199934.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33] gi|145691029|gb|ABP91534.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33] Length = 53 Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 20/48 (41%) Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 R I V + D + + + A +QHELDHL GI+ Sbjct: 6 GRYRPTTRYQEIEVEFFDASWKKISLKLTDFQAQIVQHELDHLEGIII 53 >gi|291561710|emb|CBL40509.1| N-formylmethionyl-tRNA deformylase [butyrate-producing bacterium SS3/4] Length = 98 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 11/82 (13%) Query: 11 DPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+ L + S + + +I ++L+ + + +G+AA IGV ++V+ Sbjct: 3 DPLFLAQKSTDATEAD---QQVIIDLLDTLRANLDHCVGMAANMIGVKKNIIVVAAGPFQ 59 Query: 68 HRKNPMVFINPKIITFSDDFSV 89 +NP I + F + Sbjct: 60 -----FAMVNPVITKKTGAFII 76 >gi|302779762|ref|XP_002971656.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii] gi|300160788|gb|EFJ27405.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii] Length = 556 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 V++PDP LR + I + ++ L ML+V Y DG+GL+ Q+G Sbjct: 73 VLYPDPKLRARNIRINSFDDNVKKL---MLDVTYRRDGVGLSTPQLGKGK 119 >gi|169838331|ref|ZP_02871519.1| hypothetical protein cdivTM_14746 [candidate division TM7 single-cell isolate TM7a] Length = 54 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 A Q+ + R V++ + +NP+I+ FS++ + +EGCLSIP Sbjct: 8 ANQVDIAKRFFVLEHDGILKK-----VVNPEILEFSEEIADMEEGCLSIPGV 54 >gi|291539324|emb|CBL12435.1| N-formylmethionyl-tRNA deformylase [Roseburia intestinalis XB6B4] Length = 63 Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 33/96 (34%) Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 IGV ++V+ INP I S F +EGCLS+ R+ R I Sbjct: 1 MIGVKKNIIVVAAGPFQ-----FAMINPVITRKSGAFET-EEGCLSLDGVRSC-TRYEEI 53 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 E+DH NGI+ Sbjct: 54 --------------------------EVDHCNGIVI 63 >gi|302776574|ref|XP_002971443.1| hypothetical protein SELMODRAFT_412157 [Selaginella moellendorffii] gi|300160575|gb|EFJ27192.1| hypothetical protein SELMODRAFT_412157 [Selaginella moellendorffii] Length = 239 Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 38/131 (29%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EG 93 ML+V Y DG+GL+ Q+G + VF+NP I+ F + EG Sbjct: 1 MLDVTYRRDGVGLSTPQLG---------------KGKGYVFVNPMIVKFGKEREADTLEG 45 Query: 94 CLSIPD--------YRADVKRSA----FITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 CL R + R + ++ +DC+ + L A Sbjct: 46 CLPFYGAQADRLISIRVESSRHQREEIWYRLQGLDCSNFPTWRWPWYLFAQ--------- 96 Query: 142 NGILFIDHLSR 152 G+L+ID ++ Sbjct: 97 -GVLYIDQMTP 106 >gi|281202742|gb|EFA76944.1| hypothetical protein PPL_09696 [Polysphondylium pallidum PN500] Length = 614 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + + + I ADG+++ CLQHE DHL G +FI+ L Sbjct: 55 GCDISGKDRSIEADGIISACLQHENDHLLGRVFIERLK 92 >gi|169838808|ref|ZP_02871996.1| hypothetical protein cdivTM_17171 [candidate division TM7 single-cell isolate TM7a] Length = 143 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 +L LQHE+DH NGI+FIDH+ + K+D K Sbjct: 35 ILVRVLQHEIDHTNGIVFIDHI-KNKKDAFYK 65 >gi|169839308|ref|ZP_02872496.1| hypothetical protein cdivTM_19702 [candidate division TM7 single-cell isolate TM7a] Length = 56 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 GCLS+ V R + V+ ++ + + I A+G+ + Sbjct: 2 GCLSVSKVYGKVPRYNKVRVKALNEDGKEIRIKAEGIPSKSF 43 >gi|302765901|ref|XP_002966371.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii] gi|300165791|gb|EFJ32398.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii] Length = 374 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 V++PDP LR + I + ++ L ML+V Y DG+GL+ ++G Sbjct: 73 VLYPDPKLRARNIRINSFDDNVKKL---MLDVTYRRDGVGLSTPRLGKGK 119 >gi|167950136|ref|ZP_02537210.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 40 Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 NP+I + D F + +EGCLS+PDY +V R+ I + D Sbjct: 2 NPEI-SKWDGFELGREGCLSVPDYTGNVIRAERIKLTAQD 40 >gi|163750342|ref|ZP_02157583.1| polypeptide deformylase [Shewanella benthica KT99] gi|161330014|gb|EDQ00999.1| polypeptide deformylase [Shewanella benthica KT99] Length = 57 Score = 43.1 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 16/38 (42%) Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 V + D N G +A QHE HL GI I+ Sbjct: 6 VSFQDLNGLEYHPSLTGFIARIFQHEYVHLQGITLIER 43 >gi|330881834|gb|EGH15983.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 32 Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 18/32 (56%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLI 32 M ++ FPD LR +++P+ ++ I L+ Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLV 32 >gi|291534775|emb|CBL07887.1| N-formylmethionyl-tRNA deformylase [Roseburia intestinalis M50/1] Length = 61 Score = 39.3 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 INP I S F +EGCLS+ R+ R I V + + Sbjct: 18 MINPVITRKSGAFET-EEGCLSLDGVRSC-TRYEEIEVDHCN 57 >gi|289805200|ref|ZP_06535829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 40 Score = 38.9 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Query: 134 LQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168 +QHE+DHL G L + S LK+ I +K+ KL +L Sbjct: 1 MQHEMDHLVGKLVYSIICSPLKQQRIRQKVEKLDRL 36 >gi|253795648|ref|YP_003038744.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem] gi|253739956|gb|ACT34291.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem] Length = 166 Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 +E CLS+ + V RS + + + + G+ A C QHELDH+ G+L D Sbjct: 86 ESREACLSLTSAVSVVARSWRVCAVALAA--RAGALSVRGVAACCCQHELDHVVGVLIAD 143 >gi|77409503|ref|ZP_00786192.1| polypeptide deformylase, putative [Streptococcus agalactiae COH1] gi|77171887|gb|EAO75067.1| polypeptide deformylase, putative [Streptococcus agalactiae COH1] Length = 32 Score = 38.5 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 14/27 (51%) Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q I A QHELDHL GIL Sbjct: 6 KEQQIKLTDFPAQICQHELDHLEGILI 32 >gi|303242038|ref|ZP_07328530.1| hypothetical protein AceceDRAFT_3878 [Acetivibrio cellulolyticus CD2] gi|302590456|gb|EFL60212.1| hypothetical protein AceceDRAFT_3878 [Acetivibrio cellulolyticus CD2] Length = 36 Score = 38.1 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 17/35 (48%) Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + GLLA HE+DHL L ID + + I Sbjct: 2 VEGTGLLAWEFCHEIDHLEQSLLIDKIIPGTKKSI 36 >gi|332308597|ref|YP_004436448.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175926|gb|AEE25180.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1001 Score = 37.7 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 129 LLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168 L A +QHE+D+ I F DHL ++RD+ +K+ + + L Sbjct: 750 LTANTMQHEIDYYLRIGFTDHLAKPIERDVFIRKVRQYLNL 790 >gi|307321264|ref|ZP_07600665.1| hypothetical protein SinmeDRAFT_5123 [Sinorhizobium meliloti AK83] gi|306893074|gb|EFN23859.1| hypothetical protein SinmeDRAFT_5123 [Sinorhizobium meliloti AK83] Length = 221 Score = 37.0 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMIT-KKMSKLVQL 168 + C HE HLNG LF+D + + + +K+ K+++L Sbjct: 124 WICFCPMHEFTHLNGRLFVDFVGKTETLWDDIRKLEKILKL 164 >gi|209524509|ref|ZP_03273057.1| conserved hypothetical protein [Arthrospira maxima CS-328] gi|209494967|gb|EDZ95274.1| conserved hypothetical protein [Arthrospira maxima CS-328] Length = 282 Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 7/85 (8%) Query: 13 ILRRVS-RPIEKINSDIMNLIDNMLEV--MYSTDG--IGLAAVQIGVLYRLVVIDLQDHA 67 +LRR S + +E + + + E MY +G +GLAA ++G+ + D + Sbjct: 152 VLRRQSGKEVEFF--RVWQTLSYLFESEGMYDGEGYSMGLAASKVGLDFDFYRTDWFEFF 209 Query: 68 HRKNPMVFINPKIITFSDDFSVYQE 92 K IN ++ ++E Sbjct: 210 KDKIEKERINNGQSKLTEKKIYFEE 234 >gi|302023399|ref|ZP_07248610.1| peptide deformylase [Streptococcus suis 05HAS68] Length = 27 Score = 35.8 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHELDHL GI+ Sbjct: 1 KKISLKLTDFQAQIVQHELDHLEGIII 27 >gi|169841315|ref|ZP_02874428.1| hypothetical protein cdivTM_29458 [candidate division TM7 single-cell isolate TM7a] Length = 33 Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 14/24 (58%) Query: 113 RYMDCNAQHQIIYADGLLATCLQH 136 + ++ + + I A+G LA LQH Sbjct: 8 KALNEDGKEIRIKAEGFLARVLQH 31 >gi|315647001|ref|ZP_07900115.1| putative transcriptional regulator [Paenibacillus vortex V453] gi|315277653|gb|EFU40978.1| putative transcriptional regulator [Paenibacillus vortex V453] Length = 213 Score = 35.0 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 17/27 (62%) Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMS 163 E++H+ G LF+D L + +R + +K Sbjct: 96 EINHMFGELFVDELFKRRRKRLEQKYQ 122 >gi|307728644|ref|YP_003905868.1| short-chain dehydrogenase/reductase SDR [Burkholderia sp. CCGE1003] gi|307583179|gb|ADN56577.1| short-chain dehydrogenase/reductase SDR [Burkholderia sp. CCGE1003] Length = 250 Score = 35.0 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNM--LEVMYSTDGIGLAAV 50 P P LR ++ + N I +++ L+V+ + G GLAA Sbjct: 42 PSPRLRVLALDVTD-NESIRRALEDAGPLDVLVNNAGFGLAAP 83 >gi|325848969|ref|ZP_08170479.1| hypothetical protein HMPREF9246_1249 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480613|gb|EGC83675.1| hypothetical protein HMPREF9246_1249 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 352 Score = 34.7 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 7/61 (11%) Query: 76 INPKIITFSDDFSVYQE----GCLSIPDYRADVKR---SAFITVRYMDCNAQHQIIYADG 128 +NPKII G S PD D+ R TV Y + + Q I++ Sbjct: 176 LNPKIIRKEHGNCCDWCKEIVGTYSYPDVPEDIYRRHRHCRCTVDYYPGDGKKQDIWSKK 235 Query: 129 L 129 Sbjct: 236 W 236 >gi|111023288|ref|YP_706260.1| sensor histidine kinase [Rhodococcus jostii RHA1] gi|110822818|gb|ABG98102.1| sensor histidine kinase [Rhodococcus jostii RHA1] Length = 590 Score = 34.7 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGV 54 DP+LRR S + L+ ++LE+ G+ LAA Q+ V Sbjct: 331 DPVLRRSSELLVAELDRFEGLLADLLEISRHDAGVAELAAEQLDV 375 >gi|158333851|ref|YP_001515023.1| lignostilbene-alpha,beta-dioxygenase [Acaryochloris marina MBIC11017] gi|158304092|gb|ABW25709.1| lignostilbene-alpha,beta-dioxygenase, putative [Acaryochloris marina MBIC11017] Length = 488 Score = 34.7 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 50 VQ-IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 Q +G +R V + + D + + P+ I K+ S + ++ + P V R Sbjct: 367 PQWVGKEHRYVYMSVCDSSDKNGPLQAIL-KLDKESGEQQIWSVAPRAFPGEPIFVPRPD 425 >gi|226365795|ref|YP_002783578.1| two-component histidine kinase MtrB [Rhodococcus opacus B4] gi|226244285|dbj|BAH54633.1| two-component histidine kinase MtrB [Rhodococcus opacus B4] Length = 590 Score = 34.7 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGV 54 DP+LRR S + L+ ++LE+ G+ LAA Q+ V Sbjct: 331 DPVLRRSSELLVAELDRFEGLLADLLEISRHDAGVAELAAEQLDV 375 >gi|318077238|ref|ZP_07984570.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actF] Length = 195 Score = 34.3 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 12/64 (18%) Query: 18 SRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + P+ + + +I ++D +L G+GL+A QIGV ++ Sbjct: 132 AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPW 191 Query: 66 HAHR 69 R Sbjct: 192 GRRR 195 >gi|60359832|dbj|BAD90135.1| mFLJ00359 protein [Mus musculus] Length = 1108 Score = 34.3 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 10/105 (9%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC------LSI-- 97 GL+ Q GV Y L + + + N ++TF+ + + C +S Sbjct: 627 GLS--QTGVTYVLKAMSTCGTLEDLHISLLSNTVVLTFAQEPREQEGSCKGRAPLISFVS 684 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 P +RS I + + A+H + L A+C H LDHL+ Sbjct: 685 PVTSELSQRSRRIRLTHCGFLAKHTETLCEALRASCQTHNLDHLD 729 >gi|298675922|ref|YP_003727672.1| hypothetical protein Metev_2047 [Methanohalobium evestigatum Z-7303] gi|298288910|gb|ADI74876.1| protein of unknown function DUF785 [Methanohalobium evestigatum Z-7303] Length = 180 Score = 34.3 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 17/84 (20%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-------NAQHQIIY 125 +F+NP+II ++ S R V+R ITV+ + + Sbjct: 80 YLFLNPEIINKQGSVYRLEK--CSKRGERVLVERPYRITVKGERIILAQVHPEKKKIEVS 137 Query: 126 ADGLLATCL--------QHELDHL 141 + HE++HL Sbjct: 138 EPEYKSIIFTGSPAYSAAHEIEHL 161 >gi|317507216|ref|ZP_07964967.1| hypothetical protein HMPREF9336_01339 [Segniliparus rugosus ATCC BAA-974] gi|316254489|gb|EFV13808.1| hypothetical protein HMPREF9336_01339 [Segniliparus rugosus ATCC BAA-974] Length = 273 Score = 33.9 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 11/77 (14%) Query: 38 VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97 + DG RL + P+ + PK+ + S G ++ Sbjct: 57 TLEDADG----------NRRLFEMKPGAFLLEGKPVTLVRPKVGSLSGPLRTAS-GSTAV 105 Query: 98 PDYRADVKRSAFITVRY 114 P A V R++ I V Sbjct: 106 PGAPARVARASRIWVEG 122 >gi|297618092|ref|YP_003703251.1| hypothetical protein Slip_1934 [Syntrophothermus lipocalidus DSM 12680] gi|297145929|gb|ADI02686.1| hypothetical protein Slip_1934 [Syntrophothermus lipocalidus DSM 12680] Length = 178 Score = 33.9 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 19/47 (40%) Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 + V+R I R + + +A QHE+D ++ ++ Sbjct: 7 GTFSPVERRRSIVNRAQENPIHPEDWTFKDSVAAIFQHEIDTIDSVV 53 >gi|254692966|ref|NP_001028379.2| protein NLRC5 [Mus musculus] gi|306756308|sp|C3VPR6|NLRC5_MOUSE RecName: Full=Protein NLRC5 Length = 1915 Score = 33.5 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 10/105 (9%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC------LSI-- 97 GL+ Q GV Y L + + + N ++TF+ + + C +S Sbjct: 911 GLS--QTGVTYVLKAMSTCGTLEDLHISLLNNTVVLTFAQEPREQEGSCKGRAPLISFVS 968 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 P +RS I + + A+H + L A+C H LDHL+ Sbjct: 969 PVTSELSQRSRRIRLTHCGFLAKHTETLCEALRASCQTHNLDHLD 1013 >gi|227809548|gb|ACP40992.1| NLRC5 [Mus musculus] Length = 1915 Score = 33.5 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 10/105 (9%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC------LSI-- 97 GL+ Q GV Y L + + + N ++TF+ + + C +S Sbjct: 911 GLS--QTGVTYVLKAMSTCGTLEDLHISLLNNTVVLTFAQEPREQEGSCKGRAPLISFVS 968 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 P +RS I + + A+H + L A+C H LDHL+ Sbjct: 969 PVTSELSQRSRRIRLTHCGFLAKHTETLCEALRASCQTHNLDHLD 1013 >gi|148679184|gb|EDL11131.1| mCG131281 [Mus musculus] Length = 894 Score = 33.5 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 10/105 (9%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC------LSI-- 97 GL+ Q GV Y L + + + N ++TF+ + + C +S Sbjct: 679 GLS--QTGVTYVLKAMSTCGTLEDLHISLLNNTVVLTFAQEPREQEGSCKGRAPLISFVS 736 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 P +RS I + + A+H + L A+C H LDHL+ Sbjct: 737 PVTSELSQRSRRIRLTHCGFLAKHTETLCEALRASCQTHNLDHLD 781 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.316 0.175 0.588 Lambda K H 0.267 0.0534 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,012,568,280 Number of Sequences: 14124377 Number of extensions: 197683362 Number of successful extensions: 632133 Number of sequences better than 10.0: 3503 Number of HSP's better than 10.0 without gapping: 6517 Number of HSP's successfully gapped in prelim test: 411 Number of HSP's that attempted gapping in prelim test: 615776 Number of HSP's gapped (non-prelim): 6994 length of query: 170 length of database: 4,842,793,630 effective HSP length: 129 effective length of query: 41 effective length of database: 3,020,748,997 effective search space: 123850708877 effective search space used: 123850708877 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.7 bits) S2: 77 (33.9 bits)