BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780297|ref|YP_003064710.1| peptide deformylase
[Candidatus Liberibacter asiaticus str. psy62]
         (170 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039974|gb|ACT56770.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 170

 Score =  347 bits (890), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV
Sbjct: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ
Sbjct: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD
Sbjct: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170


>gi|315122858|ref|YP_004063347.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496260|gb|ADR52859.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 165

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/167 (70%), Positives = 146/167 (87%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M KK L+ FPDP+LRRVSR +E I+SDI++LI++M EVMYS+DGIGLAAVQIG+LYR+VV
Sbjct: 1   MKKKSLIFFPDPVLRRVSRSVETIDSDIIHLIEDMFEVMYSSDGIGLAAVQIGILYRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL    + K+P+VFINP I++ S+D SV  EGCLSIP++RADVKR++F+TV+Y+D NAQ
Sbjct: 61  IDL----NTKSPLVFINPTIVSSSNDCSVRAEGCLSIPNHRADVKRASFVTVKYLDSNAQ 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            QIIYADGLLATCLQHE+DHLNGILFIDH+SRLKRDMI  K+ KL++
Sbjct: 117 PQIIYADGLLATCLQHEIDHLNGILFIDHISRLKRDMIINKILKLIR 163


>gi|325291800|ref|YP_004277664.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
           H13-3]
 gi|325059653|gb|ADY63344.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
           H13-3]
          Length = 170

 Score =  223 bits (569), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 100/169 (59%), Positives = 135/169 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ SRPIE+++++++ L D+MLE MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQQSRPIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+I+  SDD S Y+EGCLSIPDY A+V+R A +TVRY+D + +
Sbjct: 61  IDVSREDEEKKPVVFINPEILRVSDDVSAYEEGCLSIPDYYAEVERPASLTVRYVDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           HQ++ ADGLLATCLQHE+DHLNGILFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 HQMVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIKKFTKAARAK 169


>gi|190890084|ref|YP_001976626.1| peptide deformylase [Rhizobium etli CIAT 652]
 gi|190695363|gb|ACE89448.1| peptide deformylase protein [Rhizobium etli CIAT 652]
          Length = 171

 Score =  223 bits (567), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 132/167 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167


>gi|86356069|ref|YP_467961.1| peptide deformylase [Rhizobium etli CFN 42]
 gi|86280171|gb|ABC89234.1| peptide deformylase protein [Rhizobium etli CFN 42]
          Length = 171

 Score =  223 bits (567), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 132/167 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SDD SVY+EGCLSIPDY A+V+R A ++V+Y+D   +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDDRSVYEEGCLSIPDYYAEVERPATVSVKYLDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q++ ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  +
Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167


>gi|327191106|gb|EGE58154.1| peptide deformylase protein [Rhizobium etli CNPAF512]
          Length = 171

 Score =  222 bits (566), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 131/167 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVEYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167


>gi|241202826|ref|YP_002973922.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856716|gb|ACS54383.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 171

 Score =  222 bits (565), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 132/167 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE+++SD+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+++  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDIAREGEEKQPQVFINPEVVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167


>gi|218460831|ref|ZP_03500922.1| peptide deformylase [Rhizobium etli Kim 5]
          Length = 171

 Score =  221 bits (563), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 132/167 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQLSQPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167


>gi|116250199|ref|YP_766037.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254847|emb|CAK05921.1| putative peptide deformylase (polypeptide deformylase) [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 171

 Score =  221 bits (563), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 132/167 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE+++SD+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ S+Y+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDISREGEEKQPQVFINPEIVKSSDERSLYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167


>gi|218672914|ref|ZP_03522583.1| peptide deformylase [Rhizobium etli GR56]
          Length = 171

 Score =  221 bits (562), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 133/167 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQLSQPIERMDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q++ ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  +
Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167


>gi|218513698|ref|ZP_03510538.1| peptide deformylase [Rhizobium etli 8C-3]
          Length = 171

 Score =  221 bits (562), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 131/167 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP LR++S+PIE++++++  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPFLRQLSKPIERVDAELQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167


>gi|209547667|ref|YP_002279584.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533423|gb|ACI53358.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 171

 Score =  220 bits (561), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 131/167 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+ S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQASKPIERVDADLQGLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+++D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKFLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167


>gi|227820644|ref|YP_002824614.1| peptide deformylase [Sinorhizobium fredii NGR234]
 gi|227339643|gb|ACP23861.1| peptide deformylase [Sinorhizobium fredii NGR234]
          Length = 174

 Score =  220 bits (560), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 100/169 (59%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPILRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPKI+  S++ SVY+EGCLSIPDY A+V+R A I V Y+D + +
Sbjct: 61  LDVSKEGEEKTPLVFINPKIVKSSEERSVYEEGCLSIPDYYAEVERPAAIAVEYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K  + R
Sbjct: 121 QQSVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169


>gi|150395282|ref|YP_001325749.1| peptide deformylase [Sinorhizobium medicae WSM419]
 gi|150026797|gb|ABR58914.1| peptide deformylase [Sinorhizobium medicae WSM419]
          Length = 174

 Score =  220 bits (560), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 98/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E +++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPVLRQVSTPVETVDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 61  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K  + R
Sbjct: 121 EQAVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169


>gi|222084707|ref|YP_002543236.1| peptide deformylase [Agrobacterium radiobacter K84]
 gi|221722155|gb|ACM25311.1| peptide deformylase [Agrobacterium radiobacter K84]
          Length = 171

 Score =  219 bits (557), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 134/167 (80%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+PIE+++++I+ L D+MLE MY   GIGLAAVQIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQASKPIERVDTEILRLADDMLETMYDAPGIGLAAVQIGVARRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+++  SD+ SVY+EGCLSIPDY A+V+R A +TV+++D + +
Sbjct: 61  IDVAREGEDKQPLVFINPEVVASSDERSVYEEGCLSIPDYYAEVERPARVTVKHIDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q+I ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  +
Sbjct: 121 EQLIEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167


>gi|23396548|sp|Q92SH6|DEF_RHIME RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
          Length = 174

 Score =  218 bits (555), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 61  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K  + R
Sbjct: 121 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 169


>gi|15964172|ref|NP_384525.1| peptide deformylase [Sinorhizobium meliloti 1021]
 gi|307301317|ref|ZP_07581079.1| peptide deformylase [Sinorhizobium meliloti BL225C]
 gi|307317988|ref|ZP_07597425.1| peptide deformylase [Sinorhizobium meliloti AK83]
 gi|15073348|emb|CAC41856.1| Probable peptide deformylase [Sinorhizobium meliloti 1021]
 gi|306896390|gb|EFN27139.1| peptide deformylase [Sinorhizobium meliloti AK83]
 gi|306903773|gb|EFN34360.1| peptide deformylase [Sinorhizobium meliloti BL225C]
          Length = 178

 Score =  218 bits (554), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 97/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 5   MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 65  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K  + R
Sbjct: 125 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 173


>gi|15887717|ref|NP_353398.1| peptide deformylase [Agrobacterium tumefaciens str. C58]
 gi|23396541|sp|Q8UID1|DEF_AGRT5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|15155278|gb|AAK86183.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58]
          Length = 170

 Score =  215 bits (547), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 96/169 (56%), Positives = 131/169 (77%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+ IE+++++++ L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQQSKLIEQVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+I+  SDD S Y+EGCLSIPDY A+V+R A +TV+Y+  + +
Sbjct: 61  IDVAREGEEKTPVVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQYVGRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKRDM+ KK +K  + +
Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAARAK 169


>gi|254501503|ref|ZP_05113654.1| peptide deformylase [Labrenzia alexandrii DFL-11]
 gi|222437574|gb|EEE44253.1| peptide deformylase [Labrenzia alexandrii DFL-11]
          Length = 189

 Score =  211 bits (537), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 124/168 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+P++  PDP+LR V  PIEK++++ + L D+MLE MY   GIGLAA Q+G+L R+ V
Sbjct: 18  MTKRPIITIPDPVLREVCAPIEKVDAETIALADDMLETMYDAPGIGLAASQVGILKRIFV 77

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K PMVFINP+II + D+ SVYQEGCLSIPDY  DV+R A + V++MD    
Sbjct: 78  LDVAKEDAPKEPMVFINPEIIWYGDELSVYQEGCLSIPDYYEDVERPAEVAVKFMDREGA 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K  +L
Sbjct: 138 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKL 185


>gi|163757845|ref|ZP_02164934.1| peptide deformylase [Hoeflea phototrophica DFL-43]
 gi|162285347|gb|EDQ35629.1| peptide deformylase [Hoeflea phototrophica DFL-43]
          Length = 172

 Score =  211 bits (537), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 127/169 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLV+ PDPILR+ S P+E++++++   ID+MLE MY   GIGLAA+Q+GV  RL+V
Sbjct: 1   MTIKPLVLLPDPILRQQSLPVERVDAELEGFIDDMLETMYDAPGIGLAAIQVGVPRRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K+P VFINP+++   D  SVY+EGCLSIPDY ADV+R   ITV+Y+  + +
Sbjct: 61  IDVAGKDEPKSPQVFINPEVVATGDGISVYEEGCLSIPDYYADVERPETITVKYLGRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                ADGLLATCLQHE+DHLNG+LFIDH+S+LKRDM+ +K +KL + R
Sbjct: 121 EHTTEADGLLATCLQHEIDHLNGVLFIDHISKLKRDMVVRKFTKLAKQR 169


>gi|222147432|ref|YP_002548389.1| peptide deformylase [Agrobacterium vitis S4]
 gi|221734422|gb|ACM35385.1| peptide deformylase [Agrobacterium vitis S4]
          Length = 176

 Score =  209 bits (533), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 123/158 (77%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++I PDP+LR VS+PIE+I++D+  LID+MLE MY   GIGLAAVQI V  RL+V
Sbjct: 5   MTTKPIIILPDPLLREVSQPIERIDADLERLIDDMLETMYDAPGIGLAAVQIAVPRRLLV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+II  S   S Y+EGCLSIPDY A+V+R A +TV+ +D + +
Sbjct: 65  IDVSKEGEDKQPLVFINPEIIGSSQARSTYEEGCLSIPDYYAEVERPAAVTVKSLDRHGK 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Q+I ADGLLATCLQHE+DHLNG LFIDH+SRLKR+M+
Sbjct: 125 EQVIEADGLLATCLQHEIDHLNGTLFIDHISRLKREMV 162


>gi|90419800|ref|ZP_01227709.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
 gi|90335841|gb|EAS49589.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
          Length = 170

 Score =  204 bits (519), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 91/164 (55%), Positives = 122/164 (74%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+P+E ++  +  L D+MLE MY   GIGLAA+QIG   R++V
Sbjct: 1   MTIKPLIILPDPVLRQTSKPVETVDDQVRRLADDMLETMYDAPGIGLAAIQIGEPLRMMV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+        P +F+NP+I+T SD  SVY+EGCLSIPDY A+V+R A +TVRY+  + +
Sbjct: 61  IDVSKEEEENAPRIFLNPEILTISDAVSVYEEGCLSIPDYYAEVERPAEVTVRYLGLDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                ADG+LATC+QHELDHLNG+LFIDH+S+LKRDM+ KK +K
Sbjct: 121 MHEETADGILATCVQHELDHLNGVLFIDHISKLKRDMVVKKFTK 164


>gi|319780347|ref|YP_004139823.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166235|gb|ADV09773.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 125/164 (76%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   RL+VIDL
Sbjct: 4   KPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRLLVIDL 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P VFINP+I+  +D  SVY+EGCLSIPDY A+V+R A + V+Y+D + + Q 
Sbjct: 64  AKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGKLQE 123

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           I A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL +
Sbjct: 124 IEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKKLAR 167


>gi|153008675|ref|YP_001369890.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
 gi|151560563|gb|ABS14061.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
          Length = 175

 Score =  203 bits (516), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 92/169 (54%), Positives = 121/169 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLVILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P VFINP+I+  +D+ S Y+EGCLSIPDY A+V+R A I V Y D + +
Sbjct: 61  IDLAKEDEPKAPHVFINPEIVGVTDEVSTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +I ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 QHLIEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|110632755|ref|YP_672963.1| peptide deformylase [Mesorhizobium sp. BNC1]
 gi|122966266|sp|Q11LC7|DEF_MESSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110283739|gb|ABG61798.1| peptide deformylase [Chelativorans sp. BNC1]
          Length = 177

 Score =  202 bits (515), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 128/169 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV  PDP+LR+VS+P+E+++  +     +MLE MY   GIGLAA+Q+G   R++V
Sbjct: 1   MAIRPLVTLPDPLLRQVSKPVERVDESLRKFAGDMLETMYDAPGIGLAAIQVGEPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +    KNP VFINP+I++ SD  S ++EGCLSIPDY A+V+R A +TV+Y+D + +
Sbjct: 61  LDVAEKDEPKNPQVFINPEIVSRSDVPSFHEEGCLSIPDYYAEVERPAEVTVKYVDLDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            QI+ A G+LATCLQHE+DHLNG+LFID+LS+LKRDM+ +K  KL + R
Sbjct: 121 EQIVEAKGILATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFRKLAKDR 169


>gi|114705885|ref|ZP_01438788.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506]
 gi|114538731|gb|EAU41852.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506]
          Length = 173

 Score =  201 bits (511), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 124/169 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S P+ +++  +    D+MLE MY   GIGLAA+Q+G   R++ 
Sbjct: 1   MTIKPLIILPDPVLRKTSEPVARVDDALKRFADDMLETMYEAPGIGLAAIQVGEPLRMLT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VF+NP+I++ S+DFSVY+EGCLSIP+Y A+V+R A ++VRY+  + +
Sbjct: 61  IDISKEEEAKEPRVFLNPEIVSRSEDFSVYEEGCLSIPEYFAEVERPARVSVRYLGLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLATCLQHE+DHLNG+LFID+LS+LKRDM+ KK +K  + +
Sbjct: 121 MHEEEAEGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVIKKFTKAARTK 169


>gi|17988608|ref|NP_541241.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|23500757|ref|NP_700197.1| peptide deformylase [Brucella suis 1330]
 gi|62317863|ref|YP_223716.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941]
 gi|83269841|ref|YP_419132.1| peptide deformylase [Brucella melitensis biovar Abortus 2308]
 gi|148557936|ref|YP_001257946.1| peptide deformylase [Brucella ovis ATCC 25840]
 gi|161621082|ref|YP_001594968.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163845148|ref|YP_001622803.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|225629484|ref|ZP_03787517.1| peptide deformylase [Brucella ceti str. Cudo]
 gi|225686789|ref|YP_002734761.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|237817404|ref|ZP_04596396.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|256015794|ref|YP_003105803.1| peptide deformylase [Brucella microti CCM 4915]
 gi|17984410|gb|AAL53505.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|23464412|gb|AAN34202.1| polypeptide deformylase [Brucella suis 1330]
 gi|62198056|gb|AAX76355.1| Def-2, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941]
 gi|82940115|emb|CAJ13163.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus
           2308]
 gi|148369221|gb|ABQ62093.1| peptide deformylase [Brucella ovis ATCC 25840]
 gi|161337893|gb|ABX64197.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163675871|gb|ABY39981.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|225615980|gb|EEH13029.1| peptide deformylase [Brucella ceti str. Cudo]
 gi|225642894|gb|ACO02807.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|237788217|gb|EEP62433.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|255998454|gb|ACU50141.1| peptide deformylase [Brucella microti CCM 4915]
          Length = 187

 Score =  200 bits (509), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 13  MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 73  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 132

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 133 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 181


>gi|254720138|ref|ZP_05181949.1| peptide deformylase [Brucella sp. 83/13]
 gi|265985144|ref|ZP_06097879.1| peptide deformylase [Brucella sp. 83/13]
 gi|306838492|ref|ZP_07471332.1| peptide deformylase [Brucella sp. NF 2653]
 gi|264663736|gb|EEZ33997.1| peptide deformylase [Brucella sp. 83/13]
 gi|306406424|gb|EFM62663.1| peptide deformylase [Brucella sp. NF 2653]
          Length = 175

 Score =  200 bits (508), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +FINP I+  SD+ S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFINPTIVQSSDERSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|118589715|ref|ZP_01547120.1| peptide deformylase [Stappia aggregata IAM 12614]
 gi|118437801|gb|EAV44437.1| peptide deformylase [Stappia aggregata IAM 12614]
          Length = 202

 Score =  200 bits (508), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 121/168 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP+LR V  P+  ++ D+  L D+MLE MY   GIGLAA QIG+L R+ V
Sbjct: 31  MTIRPIITIPDPVLREVCAPVATVDDDVRKLADDMLETMYDAPGIGLAASQIGLLQRIFV 90

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K PMVFINPKI+  SDD SVYQEGCLSIPDY  +V+R A +TV++++    
Sbjct: 91  LDVAKDDAPKEPMVFINPKIVWSSDDLSVYQEGCLSIPDYYEEVERPAEVTVQFLNREGA 150

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K  ++
Sbjct: 151 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKM 198


>gi|189023113|ref|YP_001932854.1| peptide deformylase [Brucella abortus S19]
 gi|254690651|ref|ZP_05153905.1| peptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|254696044|ref|ZP_05157872.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|254699153|ref|ZP_05160981.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700229|ref|ZP_05162057.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|254703350|ref|ZP_05165178.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|254705509|ref|ZP_05167337.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|254710740|ref|ZP_05172551.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|254732597|ref|ZP_05191175.1| peptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|256029123|ref|ZP_05442737.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|256043903|ref|ZP_05446822.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256058806|ref|ZP_05449022.1| peptide deformylase [Brucella neotomae 5K33]
 gi|256111033|ref|ZP_05452095.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|256157315|ref|ZP_05455233.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|256253707|ref|ZP_05459243.1| peptide deformylase [Brucella ceti B1/94]
 gi|256255833|ref|ZP_05461369.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|256262077|ref|ZP_05464609.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
 gi|260167785|ref|ZP_05754596.1| peptide deformylase [Brucella sp. F5/99]
 gi|260545098|ref|ZP_05820919.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260565079|ref|ZP_05835564.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260567720|ref|ZP_05838189.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260756222|ref|ZP_05868570.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|260760409|ref|ZP_05872757.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|260763649|ref|ZP_05875981.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882046|ref|ZP_05893660.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|261216476|ref|ZP_05930757.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|261220844|ref|ZP_05935125.1| peptide deformylase [Brucella ceti B1/94]
 gi|261312913|ref|ZP_05952110.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|261318308|ref|ZP_05957505.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|261322743|ref|ZP_05961940.1| peptide deformylase [Brucella neotomae 5K33]
 gi|261750724|ref|ZP_05994433.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|261753980|ref|ZP_05997689.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|261757222|ref|ZP_06000931.1| peptide deformylase [Brucella sp. F5/99]
 gi|265986106|ref|ZP_06098663.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|265990325|ref|ZP_06102882.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265992568|ref|ZP_06105125.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|265995800|ref|ZP_06108357.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|294853988|ref|ZP_06794660.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
 gi|297249202|ref|ZP_06932903.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|54036953|sp|P63914|DEF_BRUSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040741|sp|P63913|DEF_BRUME RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189021687|gb|ACD74408.1| Formylmethionine deformylase [Brucella abortus S19]
 gi|260098369|gb|EEW82243.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260152722|gb|EEW87815.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260154385|gb|EEW89466.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260670727|gb|EEX57667.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|260674070|gb|EEX60891.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676330|gb|EEX63151.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|260871574|gb|EEX78643.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|260918083|gb|EEX84944.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|260919428|gb|EEX86081.1| peptide deformylase [Brucella ceti B1/94]
 gi|261297531|gb|EEY01028.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|261298723|gb|EEY02220.1| peptide deformylase [Brucella neotomae 5K33]
 gi|261301939|gb|EEY05436.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|261737206|gb|EEY25202.1| peptide deformylase [Brucella sp. F5/99]
 gi|261740477|gb|EEY28403.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|261743733|gb|EEY31659.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|262550097|gb|EEZ06258.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|262763438|gb|EEZ09470.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|263000994|gb|EEZ13684.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263091766|gb|EEZ16097.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
 gi|264658303|gb|EEZ28564.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|294819643|gb|EFG36643.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
 gi|297173071|gb|EFH32435.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|326411197|gb|ADZ68261.1| peptide deformylase [Brucella melitensis M28]
 gi|326554488|gb|ADZ89127.1| peptide deformylase [Brucella melitensis M5-90]
          Length = 175

 Score =  200 bits (508), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|239832661|ref|ZP_04680990.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
 gi|239824928|gb|EEQ96496.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
          Length = 175

 Score =  199 bits (505), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/167 (53%), Positives = 119/167 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLLILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P VFINP+I+  +D+ S Y+EGCLSIPDY A+V+R A I V Y D + +
Sbjct: 61  IDLAKEGEPKAPHVFINPEIVGVTDEASTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL  
Sbjct: 121 PHAMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLAS 167


>gi|254712790|ref|ZP_05174601.1| peptide deformylase [Brucella ceti M644/93/1]
 gi|254715859|ref|ZP_05177670.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261217620|ref|ZP_05931901.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261320497|ref|ZP_05959694.1| peptide deformylase [Brucella ceti M644/93/1]
 gi|260922709|gb|EEX89277.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261293187|gb|EEX96683.1| peptide deformylase [Brucella ceti M644/93/1]
          Length = 175

 Score =  198 bits (504), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDALGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|306840227|ref|ZP_07473002.1| peptide deformylase [Brucella sp. BO2]
 gi|306289832|gb|EFM61011.1| peptide deformylase [Brucella sp. BO2]
          Length = 175

 Score =  198 bits (504), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 118/169 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|306846236|ref|ZP_07478798.1| peptide deformylase [Brucella sp. BO1]
 gi|306273487|gb|EFM55348.1| peptide deformylase [Brucella sp. BO1]
          Length = 175

 Score =  197 bits (502), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 118/169 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKCSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMDADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|319407942|emb|CBI81596.1| polypeptide deformylase [Bartonella schoenbuchensis R1]
          Length = 174

 Score =  196 bits (497), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 123/167 (73%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K LV  PDPILR VS+P+E+I+  I  L D+MLE MY   GIGLAA+Q+GV  R++VID+
Sbjct: 2   KSLVTLPDPILREVSKPVEQIDLAIQKLADDMLETMYHAQGIGLAAIQVGVPLRMLVIDI 61

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            ++   KNP+V INP+I+  SD+ ++Y+EGCLSIP+Y A V+R   + VRY D   +   
Sbjct: 62  AENNTPKNPLVVINPEILWLSDERNIYKEGCLSIPEYYAQVERPKRLRVRYSDREGKQTE 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K+ K  + +D
Sbjct: 122 IEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKLKKRAKEKD 168


>gi|154247233|ref|YP_001418191.1| peptide deformylase [Xanthobacter autotrophicus Py2]
 gi|154161318|gb|ABS68534.1| peptide deformylase [Xanthobacter autotrophicus Py2]
          Length = 172

 Score =  196 bits (497), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 123/170 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I P+P LR +S  +EKI+S++  L+++M + MY   GIGLAA+Q+GV  R+V 
Sbjct: 1   MATRPILIIPEPKLRTLSASVEKIDSEVKKLVEDMFDTMYDAPGIGLAAIQVGVQRRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+  INP+II  S++ SVY EGCLSIP+Y  +V+R A +TVR+ D   Q
Sbjct: 61  IDVAREGEAKKPIALINPEIIAASEETSVYAEGCLSIPEYYEEVERPARVTVRFQDIEGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + + ADGL ATC+QHE+DHLNG+LFIDH+S+LKRD + KK +KL + +D
Sbjct: 121 VREVAADGLFATCVQHEIDHLNGVLFIDHISKLKRDRVIKKFTKLARHKD 170


>gi|260461121|ref|ZP_05809370.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
 gi|259033155|gb|EEW34417.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
          Length = 176

 Score =  194 bits (494), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/159 (55%), Positives = 121/159 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   R++V
Sbjct: 1   MPIKPLIILPDPILRQVSKPVERVDAPLRGLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P VFINP+I+  +D  SVY+EGCLSIPDY A+V+R A + V+Y+D + +
Sbjct: 61  IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ 
Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVV 159


>gi|319898269|ref|YP_004158362.1| polypeptide deformylase [Bartonella clarridgeiae 73]
 gi|319402233|emb|CBI75766.1| polypeptide deformylase [Bartonella clarridgeiae 73]
          Length = 171

 Score =  194 bits (492), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/161 (55%), Positives = 121/161 (75%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           KPLVI PDPILR VS+P+E I+S I  L D+MLE MY+  GIGLAAVQ+GV  R++V+D+
Sbjct: 4   KPLVILPDPILREVSKPVEHIDSIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLVLDI 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                 KNP+V INP+I+  S++ ++Y+EGCLSIP+Y A+V+R  ++ + Y D   +   
Sbjct: 64  SSKDAPKNPLVVINPEILWISNERNIYREGCLSIPEYYAEVERPKYLRICYRDREGKQAE 123

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K  K
Sbjct: 124 IEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKFKK 164


>gi|307943158|ref|ZP_07658503.1| peptide deformylase [Roseibium sp. TrichSKD4]
 gi|307773954|gb|EFO33170.1| peptide deformylase [Roseibium sp. TrichSKD4]
          Length = 196

 Score =  194 bits (492), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 122/168 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++  PD  LR V  P+E +++DI  L D+M E MY+  GIGLAA QIGVL RL V
Sbjct: 23  MTKRSILTIPDAQLREVCAPVETVDADIKALADDMFETMYAAPGIGLAASQIGVLKRLFV 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K+PMVFINPKI+  S+D SVYQEGCLSIPDY  D++R A + V++++ +  
Sbjct: 83  LDVAKEDAPKDPMVFINPKIVWSSEDTSVYQEGCLSIPDYYEDIERPAKVRVQFLNRDGA 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + ADGLLATC+QHELDHL G LFID+LS+LKRD + KK +KL +L
Sbjct: 143 EQEMEADGLLATCIQHELDHLYGRLFIDYLSKLKRDRVMKKFNKLAKL 190


>gi|49473752|ref|YP_031794.1| polypeptide deformylase [Bartonella quintana str. Toulouse]
 gi|81696103|sp|Q6G1G6|DEF_BARQU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49239255|emb|CAF25576.1| Polypeptide deformylase [Bartonella quintana str. Toulouse]
          Length = 176

 Score =  193 bits (491), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 120/161 (74%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           KPL+I PDPILR VS+P+E ++S I  L D+MLE MY   G+GLAA+QIG+  R++VID+
Sbjct: 4   KPLIILPDPILREVSKPVEHVDSTIQKLADDMLETMYDAQGVGLAAIQIGIPLRMLVIDV 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             +  +KNP+V INP+I+  SD+ ++ +EGCLSIP+Y  +++R   + VRY D   +   
Sbjct: 64  SRNETQKNPLVIINPEILWLSDERNICKEGCLSIPEYYTEIERPKRLCVRYQDREGKQTE 123

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K  K
Sbjct: 124 IEADHLLATCLQHEIDHLNGRLFIDHISKIKRDMVIRKFKK 164


>gi|13474065|ref|NP_105633.1| peptide deformylase [Mesorhizobium loti MAFF303099]
 gi|23396550|sp|Q98D52|DEF_RHILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|14024817|dbj|BAB51419.1| N-formylmethionylaminoacyl-tRNA deformylase [Mesorhizobium loti
           MAFF303099]
          Length = 176

 Score =  193 bits (491), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 120/156 (76%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   R++VIDL
Sbjct: 4   KPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRMLVIDL 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P VFINP+I+  ++  SVY+EGCLSIPDY A+V+R A + V+Y+D + + Q 
Sbjct: 64  AKEDETPAPHVFINPEILESAEARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGKLQE 123

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ 
Sbjct: 124 MEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVV 159


>gi|49474898|ref|YP_032939.1| polypeptide deformylase [Bartonella henselae str. Houston-1]
 gi|81696215|sp|Q6G5F0|DEF_BARHE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49237703|emb|CAF26892.1| Polypeptide deformylase [Bartonella henselae str. Houston-1]
          Length = 176

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/164 (53%), Positives = 123/164 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PDPILR +S+P+E I+S +  L D+MLE MY   G+GLAA+QIG+  R++V
Sbjct: 1   MPMRPLVIVPDPILREISKPVEYIDSAVQKLADDMLETMYHAQGVGLAAIQIGIPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+  +  +KNP+V INP+++  SD+ ++Y+EGCLSIP+Y A+V+R   + VRY +   +
Sbjct: 61  LDVSRNDEQKNPLVIINPEVLWLSDERNIYKEGCLSIPEYFAEVERPKRLCVRYQNREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I AD LLATCLQHE+DHLNG LFID+LS++KRDM+ +K  K
Sbjct: 121 QTEIEADDLLATCLQHEIDHLNGRLFIDYLSKIKRDMVIRKFKK 164


>gi|307294614|ref|ZP_07574456.1| peptide deformylase [Sphingobium chlorophenolicum L-1]
 gi|306879088|gb|EFN10306.1| peptide deformylase [Sphingobium chlorophenolicum L-1]
          Length = 176

 Score =  191 bits (484), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 120/167 (71%), Gaps = 7/167 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PDP LR +S P+E I++D+  LID+MLE MY   GIGLAA+Q+GV  R++VIDLQ
Sbjct: 5   PILEAPDPRLRTISSPVEAIDADLQRLIDDMLETMYDAPGIGLAAIQVGVPKRVLVIDLQ 64

Query: 65  -------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
                  D    K PMVFINP+I+  S+D SVY EGCLS+PD  A+V+R A I   +MD 
Sbjct: 65  EPESDEEDAPPVKKPMVFINPEILEGSEDLSVYNEGCLSVPDQFAEVERPASIRASWMDR 124

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +      +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K
Sbjct: 125 DGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTK 171


>gi|158422422|ref|YP_001523714.1| polypeptide or peptide deformylase family protein [Azorhizobium
           caulinodans ORS 571]
 gi|158329311|dbj|BAF86796.1| polypeptide or peptide deformylase family protein [Azorhizobium
           caulinodans ORS 571]
          Length = 172

 Score =  191 bits (484), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/160 (53%), Positives = 117/160 (73%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++I P+P LR++S P+ +I+ +I  L  +MLE MY   GIGLAA+Q+GV  R++ ID+ 
Sbjct: 5   PILIIPEPQLRQISAPVPRIDKEIEKLAADMLETMYDAPGIGLAAIQVGVHKRVITIDIA 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                KNP+V INP++++ S++ S Y EGCLSIP+Y  +V+R A +TVRY D       I
Sbjct: 65  REDAPKNPIVLINPEVVSASEETSFYNEGCLSIPEYYEEVERPAQVTVRYQDLKGATHEI 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLATCLQHE+DHLNG+LFIDHLSRLKR+ + KK +K
Sbjct: 125 AADGLLATCLQHEIDHLNGVLFIDHLSRLKRERVIKKFTK 164


>gi|319406474|emb|CBI80115.1| polypeptide deformylase [Bartonella sp. 1-1C]
          Length = 176

 Score =  191 bits (484), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 122/167 (73%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K LVI PDPILR VS+P+E+I+  I  L D+MLE MY+  GIGLAAVQ+GV  R++V+D+
Sbjct: 4   KSLVILPDPILREVSKPVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLVVDI 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                 KNP+V INP+I+  SD+ SVY+EGCLSIPDY A+V+R   + + Y D   +   
Sbjct: 64  HPKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLCMCYRDREGKQVE 123

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K  ++++
Sbjct: 124 IEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170


>gi|328545268|ref|YP_004305377.1| peptide deformylase 1 [polymorphum gilvum SL003B-26A1]
 gi|326415010|gb|ADZ72073.1| Peptide deformylase 1 [Polymorphum gilvum SL003B-26A1]
          Length = 172

 Score =  189 bits (481), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 119/164 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++I PDP+LR+   P+ K++  I  L D+MLE MY+  GIGLAA QIGVL RL V
Sbjct: 1   MTKRDILIIPDPVLRQHCEPVVKVDDAIRKLADDMLETMYAAPGIGLAASQIGVLKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      + PMVFINP+I+  S++ SVYQEGCLSIP+Y  +V+R A + VR+ + +  
Sbjct: 61  LDVAKEDQPRAPMVFINPEIVWASEEMSVYQEGCLSIPEYYEEVERPASVRVRFFNRDGD 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q + ADGLLATC+QHE DHLNG LFID+LS+LKRD + KK +K
Sbjct: 121 EQELQADGLLATCIQHEYDHLNGRLFIDYLSKLKRDRVVKKFAK 164


>gi|163867376|ref|YP_001608570.1| peptide deformylase [Bartonella tribocorum CIP 105476]
 gi|189083066|sp|A9ILK4|DEF_BART1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|161017017|emb|CAK00575.1| polypeptide deformylase [Bartonella tribocorum CIP 105476]
          Length = 178

 Score =  187 bits (476), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/166 (53%), Positives = 123/166 (74%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + LV  PDPILR VS+P+E++++ +  L D+MLE MY   GIGLAA+QIG+  R++V
Sbjct: 1   MPMRSLVTLPDPILREVSKPVEQVDTALQELADDMLETMYHAKGIGLAAIQIGIPLRMLV 60

Query: 61  IDLQDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+  +A   +K P+V INP+I+  SD+ +VY+EGCLSIPDY A+V+R   + VRY +  
Sbjct: 61  IDVSGNAEDTQKKPLVIINPEILWLSDERNVYKEGCLSIPDYFAEVERPKRLRVRYQNRE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + + I AD LLATCLQHE+DHL+G LFID++SR+KRDM+ +K  K
Sbjct: 121 GKQKEIEADDLLATCLQHEIDHLDGRLFIDYISRIKRDMVIRKFKK 166


>gi|319404989|emb|CBI78592.1| polypeptide deformylase [Bartonella sp. AR 15-3]
          Length = 171

 Score =  187 bits (475), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 118/161 (73%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           KPLVI PDPILR VS+P+E I+  I  L D+MLE MY+  G+GLAAVQ+G+  R++V+D+
Sbjct: 4   KPLVILPDPILREVSKPVEHIDPIIQKLADDMLETMYNAQGVGLAAVQVGIPLRMLVVDI 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                 KN +V INP+I+  SD+ SVY+EGCLSIP+Y A+V+R   + + Y +   + + 
Sbjct: 64  SPKDAPKNSLVVINPEILWISDERSVYREGCLSIPEYFAEVERPKCLRISYKNREGKQEE 123

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K
Sbjct: 124 IEANDLLATCLQHEIDHLNGYLFIDHISKTKRDMVIRKFKK 164


>gi|323135726|ref|ZP_08070809.1| peptide deformylase [Methylocystis sp. ATCC 49242]
 gi|322398817|gb|EFY01336.1| peptide deformylase [Methylocystis sp. ATCC 49242]
          Length = 188

 Score =  187 bits (475), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 119/164 (72%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PDP LR+VS P+E+I+++I  L+D+MLE MY+  GIGLAA+Q+ V  R+VV+D+ 
Sbjct: 5   PIITLPDPRLRKVSEPVERIDAEIHRLLDDMLETMYAAPGIGLAAIQVAVAKRIVVVDIG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                ++P+  INP+II  S++ S YQEGCLS+PDY  DVKR A + VR++D + Q Q  
Sbjct: 65  KTEDERSPLFLINPEIIWASEELSSYQEGCLSVPDYFDDVKRPAMVKVRHLDRHGQTQEF 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            A GLLAT +QHEL+HL G LFID+LSRLKR+ + KK SK  + 
Sbjct: 125 DAVGLLATVVQHELEHLEGGLFIDNLSRLKRERVVKKFSKAARF 168


>gi|294012439|ref|YP_003545899.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S]
 gi|292675769|dbj|BAI97287.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S]
          Length = 176

 Score =  187 bits (474), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 118/167 (70%), Gaps = 7/167 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PDP LR +S P+E I+ D+  LID+M E MY   GIGLAA+Q+GV  R++VIDLQ
Sbjct: 5   PILEAPDPRLRTISSPVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRVLVIDLQ 64

Query: 65  DHAHR-------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +           K PMVFINP+I+  S+D SVY EGCLS+PD  A+V+R A I   +MD 
Sbjct: 65  EPESDEEGAPPVKKPMVFINPEILDGSEDLSVYNEGCLSVPDQFAEVERPASIRASWMDR 124

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +      +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K
Sbjct: 125 DGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTK 171


>gi|319403561|emb|CBI77143.1| polypeptide deformylase [Bartonella rochalimae ATCC BAA-1498]
          Length = 176

 Score =  186 bits (473), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 121/167 (72%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K LVI PDPILR VS+ +E+I+  I  L D+MLE MY+  GIGLAAVQ+GV  R++V+D+
Sbjct: 4   KSLVILPDPILREVSKLVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLVVDI 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                 KNP+V INP+I+  SD+ SVY+EGCLSIPDY A+V+R   + + Y D   +   
Sbjct: 64  HSKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLRMCYRDREGKQVE 123

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K  ++++
Sbjct: 124 IEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170


>gi|332185304|ref|ZP_08387053.1| peptide deformylase [Sphingomonas sp. S17]
 gi|332015028|gb|EGI57084.1| peptide deformylase [Sphingomonas sp. S17]
          Length = 173

 Score =  186 bits (471), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 119/166 (71%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PDP LR VS+P+E ++  +  L+ +M+E MY   GIGLAA+Q+GV  R++VIDLQ
Sbjct: 5   PIVEVPDPRLRLVSKPVEAVDDSVRQLVTDMIETMYDAHGIGLAAIQVGVDKRVLVIDLQ 64

Query: 65  DHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +         KNP  +INP+I++ S++ S Y EGCLSIP+  A+VKR A   V+++D   
Sbjct: 65  EEEDEEGKPVKNPKAYINPEILSVSEELSTYNEGCLSIPEQYAEVKRPARCQVKWLDEKG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +      DGLLATC+QHE+DHLNG+LFIDH+SRLKRDM+ +K+SK+
Sbjct: 125 EAHEAEFDGLLATCMQHEMDHLNGVLFIDHVSRLKRDMLMRKLSKI 170


>gi|209886650|ref|YP_002290507.1| peptide deformylase [Oligotropha carboxidovorans OM5]
 gi|229487488|sp|B6JJP8|DEF_OLICO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|209874846|gb|ACI94642.1| peptide deformylase [Oligotropha carboxidovorans OM5]
          Length = 171

 Score =  185 bits (469), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 117/168 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LRRVS P+EKI S++  L ++M E MY   GIGLAA+Q+ V  RL+ 
Sbjct: 1   MAIREIISIPDKRLRRVSEPVEKITSEVRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P VFINP+I++ S+D +VY+EGCLSIP+Y  +V+R A + VR+MD   +
Sbjct: 61  MDLAKKEGESAPRVFINPEILSKSEDIAVYEEGCLSIPEYYEEVERPASVRVRFMDLEGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +L
Sbjct: 121 VHEEDAEGLFATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKL 168


>gi|240849749|ref|YP_002971137.1| polypeptide deformylase [Bartonella grahamii as4aup]
 gi|240266872|gb|ACS50460.1| polypeptide deformylase [Bartonella grahamii as4aup]
          Length = 178

 Score =  184 bits (466), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/166 (51%), Positives = 122/166 (73%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + LV  PDPILR VS+P+++++S +  L D+MLE MY+  GIGLAA+QIG+  R++V
Sbjct: 1   MPMRSLVTLPDPILREVSKPVDQVDSALQKLADDMLETMYNAKGIGLAAIQIGIPLRMLV 60

Query: 61  IDLQDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+  ++   RK P V INP+I+  SD+ ++Y+EGCLSIPDY A+V+R   + VRY +  
Sbjct: 61  IDVSGNSEDERKKPFVIINPEILWLSDERNIYKEGCLSIPDYFAEVERPKRLCVRYQNRE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   I AD LLATCLQHE+DHL+G LFID++S++KRDM+ +K  K
Sbjct: 121 GKQTEIEADDLLATCLQHEIDHLDGRLFIDYISKIKRDMVIRKFKK 166


>gi|23009516|ref|ZP_00050535.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 171

 Score =  184 bits (466), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/167 (51%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S P+E +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLISEPVEAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVPKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM  + +
Sbjct: 61  IDTSKDETAKNPTVYLNPEIVWASEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK SK  +
Sbjct: 121 TVEREADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFSKAAK 167


>gi|94495737|ref|ZP_01302317.1| polypeptide deformylase [Sphingomonas sp. SKA58]
 gi|94425125|gb|EAT10146.1| polypeptide deformylase [Sphingomonas sp. SKA58]
          Length = 176

 Score =  184 bits (466), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 119/171 (69%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP LR +S  ++ I+ D+  LID+M + MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIRPILEAPDPRLRTISTRVDAIDDDLQTLIDDMFDTMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDHAHR-------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           IDLQ+           KNPMVFINP+I+  SDD SVY EGCLS+PD  A+V+R + I   
Sbjct: 61  IDLQEPESDEEGAPPVKNPMVFINPEILKGSDDLSVYNEGCLSVPDQFAEVERPSVIRAS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +MD   +      +GLLATCLQHE+DHL GILFIDHLSRLKRDM+ KK++K
Sbjct: 121 WMDREGRIHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRDMLMKKLNK 171


>gi|170749551|ref|YP_001755811.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
 gi|170656073|gb|ACB25128.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
          Length = 171

 Score =  183 bits (465), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 116/167 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PDP+LR  S P+  I ++I  L+ +M E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTIRPLVILPDPVLRLGSEPVGPITAEIRTLVADMFETMYDAPGVGLAAIQIGVPKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       ++  VFINP+I+  S++  VY EGCLSIPDY A+V+R   + V++ D +  
Sbjct: 61  IDTSKEEGVRDARVFINPEIVWSSEEKRVYDEGCLSIPDYYAEVERPDRVRVKFRDLDGT 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + I ADGLL+TC+QHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 EREIEADGLLSTCIQHEIDHLNGVLFIDHLSKLKRDRVIKKFTKAAK 167


>gi|296447194|ref|ZP_06889124.1| peptide deformylase [Methylosinus trichosporium OB3b]
 gi|296255253|gb|EFH02350.1| peptide deformylase [Methylosinus trichosporium OB3b]
          Length = 179

 Score =  182 bits (462), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 113/164 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP LR VS P+  I+++I  L+D+MLE MY   G+GLAA+Q+ V  R++V
Sbjct: 1   MAIRPIITLPDPRLRLVSEPVAVIDAEIRQLLDDMLETMYDAPGVGLAAIQVAVAKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D       KNPMVFINP+I+  S++  VYQEGCLS+PDY  +V+R A + V ++D    
Sbjct: 61  ADATRGDEPKNPMVFINPQIVWASEELGVYQEGCLSVPDYFEEVQRPARVRVSFLDREGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I ADGLLAT LQHE+DHL G LFIDHLSRLKR+ + KK  K
Sbjct: 121 TCEIEADGLLATVLQHEIDHLEGGLFIDHLSRLKRERVVKKFVK 164


>gi|163851063|ref|YP_001639106.1| peptide deformylase [Methylobacterium extorquens PA1]
 gi|218529893|ref|YP_002420709.1| peptide deformylase [Methylobacterium chloromethanicum CM4]
 gi|240138197|ref|YP_002962669.1| peptide deformylase [Methylobacterium extorquens AM1]
 gi|254560757|ref|YP_003067852.1| peptide deformylase [Methylobacterium extorquens DM4]
 gi|163662668|gb|ABY30035.1| peptide deformylase [Methylobacterium extorquens PA1]
 gi|218522196|gb|ACK82781.1| peptide deformylase [Methylobacterium chloromethanicum CM4]
 gi|240008166|gb|ACS39392.1| peptide deformylase [Methylobacterium extorquens AM1]
 gi|254268035|emb|CAX23906.1| peptide deformylase [Methylobacterium extorquens DM4]
          Length = 171

 Score =  182 bits (462), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLTSEPVAAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID     + KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM+ + Q
Sbjct: 61  IDTSKDENAKNPTVYLNPEIVWVSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMNLDGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 IVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167


>gi|188580852|ref|YP_001924297.1| peptide deformylase [Methylobacterium populi BJ001]
 gi|179344350|gb|ACB79762.1| peptide deformylase [Methylobacterium populi BJ001]
          Length = 171

 Score =  182 bits (461), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S P+  +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLISEPVGTVTEEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID     + KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM  + +
Sbjct: 61  IDTSKDENAKNPTVYLNPEIVWSSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 TVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167


>gi|330813514|ref|YP_004357753.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486609|gb|AEA81014.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 170

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 112/155 (72%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PDPILR+ S P++++N +I  L+ NMLE MY+  GIGLAAVQ+G+L R++VID+      
Sbjct: 10  PDPILRKKSLPVKEVNGEIKKLMKNMLETMYAAPGIGLAAVQVGILKRIIVIDISGETSL 69

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           K P+ F+NPKI+  SD     QEGCLSIP +  ++KR     V+Y+D + + + + ADGL
Sbjct: 70  KKPIFFVNPKIVWKSDILETKQEGCLSIPGHFGNIKRPEACHVKYLDYSGKEKTLKADGL 129

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LATC+QHE+DH NG LFID+LS+LK+  I KK++K
Sbjct: 130 LATCIQHEIDHCNGTLFIDYLSKLKKAFIIKKLTK 164


>gi|304320578|ref|YP_003854221.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
 gi|303299480|gb|ADM09079.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
          Length = 170

 Score =  181 bits (458), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 115/164 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V  PDP LR +S P++ ++ ++  L+D+MLE MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MTIRPIVTAPDPRLREISTPVDGVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  F+NP I   + D + YQEGCLS+PDY  +++R A  TV Y+D +  
Sbjct: 61  MDLAGEGEPPAPRYFVNPVIRNPATDLAPYQEGCLSVPDYYEEIERPATCTVDYLDYDGT 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + + A+GLLATC+QHE+DHL G+LFIDHLSRLKR+ I KK+ +
Sbjct: 121 PRTLEAEGLLATCIQHEMDHLEGVLFIDHLSRLKRERILKKLKR 164


>gi|310815113|ref|YP_003963077.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
 gi|308753848|gb|ADO41777.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
          Length = 173

 Score =  181 bits (458), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 116/169 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP LR +++P+  I+ +I  L D+MLE MY   GIGLA  Q+G L R++V
Sbjct: 1   MTTRPILIHPDPRLRAIAKPLPDISDEIRRLADDMLETMYDAPGIGLAGPQVGQLQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+V +NP+I+  SDD SVY+EGCLSIPD  A+V+R A + VR++D N  
Sbjct: 61  LDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGCLSIPDQYAEVERPASVKVRWLDLNGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    +GL ATC+QHE+DHL+G LFID+L  +KR +IT+KM KL + R
Sbjct: 121 EQDREMEGLWATCVQHEIDHLDGKLFIDYLGPMKRQLITRKMEKLKRER 169


>gi|260426170|ref|ZP_05780149.1| peptide deformylase [Citreicella sp. SE45]
 gi|260420662|gb|EEX13913.1| peptide deformylase [Citreicella sp. SE45]
          Length = 176

 Score =  180 bits (457), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 121/170 (71%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L+++  P+  ++ D+  L D+MLE MY   GIGLAA Q+G+L+RL+V+
Sbjct: 4   MKRPILIHPDPRLKKLCDPVADLSDDLRTLADDMLETMYDAPGIGLAAPQVGILHRLIVL 63

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D   QD+     P+V INP+I+  SD+ SVY+EGCLSIPD  ADV+R   + V ++D + 
Sbjct: 64  DCAKQDNGETPRPLVMINPRILASSDERSVYEEGCLSIPDQYADVERPKMVEVEWLDRDG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 124 KLQKEEFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRER 173


>gi|121602173|ref|YP_989567.1| peptide deformylase [Bartonella bacilliformis KC583]
 gi|158513863|sp|A1UUB4|DEF_BARBK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|120614350|gb|ABM44951.1| peptide deformylase [Bartonella bacilliformis KC583]
          Length = 182

 Score =  180 bits (456), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 120/167 (71%), Gaps = 6/167 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           KPLVI PDPILR +S+P+E I+S I  L D+MLE MY+  GIGLAA+Q+G+  R++V+D+
Sbjct: 4   KPLVILPDPILREISKPVEHIDSTIQQLADDMLETMYNAGGIGLAAIQVGIPLRMLVVDV 63

Query: 64  Q------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
                  +    ++P++ INP+I+  SD+ ++  EGCLSIP Y A+V+R   + +RY + 
Sbjct: 64  SIFTSIFEPDAPQDPIIVINPEILWLSDERNICMEGCLSIPGYSAEVERPKRLCIRYRNR 123

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             + + I AD +LATCLQHE+DHLNG LFIDHLS++KR+M+ +K  K
Sbjct: 124 EGEQKEIEADNILATCLQHEIDHLNGCLFIDHLSKVKRNMVIRKFEK 170


>gi|182677492|ref|YP_001831638.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633375|gb|ACB94149.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 193

 Score =  180 bits (456), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 9/176 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP+LRRV  P+  ++S+I  L+D+MLE MY   GIGLAA QI V+ R++V
Sbjct: 1   MALRSIITIPDPLLRRVCDPVADVDSEIRRLMDDMLETMYDAPGIGLAASQIAVMKRVIV 60

Query: 61  IDL------QDHAHR---KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +D+      +D A       P+   NP+I+  S++ S Y+EGCLSIPDY  +V R A + 
Sbjct: 61  MDVAKRRKGEDGAEADVAPQPLALANPEILWASEELSTYEEGCLSIPDYYEEVVRPARVR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           V Y+D   Q Q + ADG+LATC+QHE+DHLNG+LFIDH+SRLKR+ I KK SK  +
Sbjct: 121 VGYLDRQGQRQELEADGILATCVQHEIDHLNGVLFIDHISRLKRERIVKKFSKAAK 176


>gi|103485746|ref|YP_615307.1| peptide deformylase [Sphingopyxis alaskensis RB2256]
 gi|98975823|gb|ABF51974.1| peptide deformylase [Sphingopyxis alaskensis RB2256]
          Length = 180

 Score =  179 bits (455), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 116/169 (68%), Gaps = 8/169 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PDP LR +S+P+E  ++++  L+ +M E MY   GIGLAA+Q+GV  R++VIDLQ
Sbjct: 8   PIIETPDPRLRVISKPVETFDAELKQLVADMFETMYDAPGIGLAAIQVGVPKRILVIDLQ 67

Query: 65  DHAHR--------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +            + P VFINP    FSD+ SVYQEGCLS+P+  ADV R A +TV + D
Sbjct: 68  EADPEDPEGKKVIRTPRVFINPVFSDFSDEHSVYQEGCLSVPEQYADVTRPAEVTVDWQD 127

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            + +H      GL+ATC+QHE DHL GILFIDHLSRLKR+M+ KK++KL
Sbjct: 128 EDGKHHQERMTGLMATCIQHEHDHLEGILFIDHLSRLKREMVLKKLAKL 176


>gi|299132603|ref|ZP_07025798.1| peptide deformylase [Afipia sp. 1NLS2]
 gi|298592740|gb|EFI52940.1| peptide deformylase [Afipia sp. 1NLS2]
          Length = 189

 Score =  179 bits (454), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 117/168 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LR VS P++KI  +I  L ++M E MY   GIGLAA+Q+ V  RL+ 
Sbjct: 19  MAIREIISIPDKRLRLVSEPVDKITPEIRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P VFINP+I++ SDD SVY+EGCLSIP+Y  +V+R A + +RYMD + +
Sbjct: 79  MDVSKKEGEKVPRVFINPEILSKSDDVSVYEEGCLSIPEYYEEVERPASVRIRYMDLDGK 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GL ATC+QHE+DH+NG+LFID+LS+LKRD + KK +K  +L
Sbjct: 139 VHEEDAEGLFATCIQHEIDHINGVLFIDYLSKLKRDRVMKKFTKAAKL 186


>gi|300024230|ref|YP_003756841.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526051|gb|ADJ24520.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 171

 Score =  179 bits (453), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 117/163 (71%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PDP+LR++S P+E+++  ++ L+D+MLE MY   GIGLAAVQ+GVL R++V+D  
Sbjct: 5   PIITIPDPVLRKISDPVERVDDAVVKLMDDMLETMYDAPGIGLAAVQVGVLKRVLVVDAA 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +     NP+   NP+++       +++EGCLSIPD   +++R A +TVRY+D + + Q +
Sbjct: 65  EDGAPHNPIAMANPELVALGSTTRLHEEGCLSIPDVHVEIERPASVTVRYIDRHGKEQEL 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+GLLAT +QHELDHL+G L ID LSRLKRDM+ +K  K V+
Sbjct: 125 AAEGLLATAVQHELDHLDGQLIIDFLSRLKRDMVIRKFKKQVR 167


>gi|260432735|ref|ZP_05786706.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416563|gb|EEX09822.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 172

 Score =  177 bits (450), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 118/165 (71%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P++ ++ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRNILIHPDPRLKKVCAPVDDLSDELRALADDMLETMYDAPGIGLAAPQIGVLERLIVL 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +++      P+V  NP+II+ SD+ SVY+EGCLSIPD  A+V R A + V +MD N +
Sbjct: 61  DCVKEEGATPRPLVMFNPEIISASDETSVYEEGCLSIPDQFAEVTRPAEVEVAWMDQNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL
Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKL 165


>gi|288959246|ref|YP_003449587.1| peptide deformylase [Azospirillum sp. B510]
 gi|288911554|dbj|BAI73043.1| peptide deformylase [Azospirillum sp. B510]
          Length = 170

 Score =  177 bits (449), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 122/165 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P+++ P PIL+R ++P+ ++++ ++ L+D+M+E MY   GIGLAA Q+GVL R++V
Sbjct: 1   MARLPILVAPHPILKRKAQPVAEVDARVVKLMDDMVETMYDAAGIGLAAPQVGVLDRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +     NP+   NP+II  S+D +V +EGCLS+P+  A+V R   + VRY+D   Q
Sbjct: 61  VDVHEKGEPPNPIRLANPEIIWSSEDKAVCEEGCLSVPEQYAEVTRPQRVRVRYLDERNQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q I A+G+LATCLQHE+DHLNG+LF+D+LS LKR+++ KK+ K+
Sbjct: 121 PQEIEAEGMLATCLQHEIDHLNGVLFVDYLSMLKRNILLKKVQKM 165


>gi|298290074|ref|YP_003692013.1| peptide deformylase [Starkeya novella DSM 506]
 gi|296926585|gb|ADH87394.1| peptide deformylase [Starkeya novella DSM 506]
          Length = 182

 Score =  177 bits (449), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 128/178 (71%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S PI ++++ +  ++++M E MY   GIGLAAVQ+G+  R++ 
Sbjct: 1   MSIRPLVIIPDSRLRLISDPIVRVDARVRAIVEDMFETMYDAPGIGLAAVQVGIPERIIT 60

Query: 61  IDL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+        +    +KNP+  INP+II+ S++ SVY EGCLSIP+Y ADV+R A + V
Sbjct: 61  VDVVRREEGEEEGAEEKKNPIALINPEIISSSEEISVYSEGCLSIPEYYADVERPARVKV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           RYMD N + Q I ADGLLATC+QHE+DHLNG+LFIDH+S+LKRD + KK +K+ + ++
Sbjct: 121 RYMDLNGETQEIDADGLLATCVQHEIDHLNGVLFIDHISKLKRDRVMKKFTKIAKEKE 178


>gi|218510166|ref|ZP_03508044.1| peptide deformylase [Rhizobium etli Brasil 5]
          Length = 133

 Score =  176 bits (447), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 102/131 (77%)

Query: 39  MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98
           MY   GIGLAA+QIGV  R++VID+      K P VFINP+I+  SD+ SVY+EGCLSIP
Sbjct: 1   MYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIP 60

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           DY A+V+R A ++V+Y+D N + Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+
Sbjct: 61  DYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMV 120

Query: 159 TKKMSKLVQLR 169
            KK +K  + +
Sbjct: 121 IKKFTKAAKSK 131


>gi|296284446|ref|ZP_06862444.1| peptide deformylase [Citromicrobium bathyomarinum JL354]
          Length = 190

 Score =  176 bits (447), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 21/186 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS+P+E  + + D+  L+D+M E MY+ +GIGLAA+Q+GV  R+
Sbjct: 1   MAIREILEVPDPRLKTVSQPVEAGEFDDDLRTLVDDMFETMYAANGIGLAAIQVGVPKRI 60

Query: 59  VVIDLQ-----------DH--------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           +VIDLQ           DH        A +K P VFINP+I+  +++ + YQEGCLS+PD
Sbjct: 61  LVIDLQPEDPDAEPIECDHDGHKHTHPATKKEPRVFINPEILDPNEELATYQEGCLSVPD 120

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             ADV R A  TVR+ D + +      +GLLATC+QHE+DHL GILFIDHLSRLKR M  
Sbjct: 121 IYADVDRPATCTVRWKDLDGKEHTEAMEGLLATCIQHEMDHLEGILFIDHLSRLKRQMAL 180

Query: 160 KKMSKL 165
           KK+ KL
Sbjct: 181 KKLKKL 186


>gi|91762408|ref|ZP_01264373.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718210|gb|EAS84860.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 172

 Score =  176 bits (447), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 120/169 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++  P+ +LR++S+P+E +  +   L+D+ML+ MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MSVKPILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I   +D  S Y+EGCLS+PD  A+++R     V Y+D N +
Sbjct: 61  MDISRDEDKKEPRYFVNPLIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+   R
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169


>gi|87200909|ref|YP_498166.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444]
 gi|123763380|sp|Q2G491|DEF_NOVAD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|87136590|gb|ABD27332.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444]
          Length = 188

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 120/184 (65%), Gaps = 19/184 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L++VS P+EK + ++  L+++M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREIIEVPDPRLKQVSVPVEKFDDELKTLVEDMFETMYDAPGIGLAAIQVGVPLRVLV 60

Query: 61  IDLQD-------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           IDLQ                       +K P VFINP+I+  S+++SVYQEGCLS+P+  
Sbjct: 61  IDLQPDDPDAEPVACDHDGHHHHHQPTKKEPRVFINPEILDPSEEYSVYQEGCLSVPEIY 120

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           A+V+R A I  R+ D + +      +GL+ATCLQHE+DHL G+LFIDHLSRLKR+M  KK
Sbjct: 121 AEVERPATIRARWQDLDGKVHEEQMEGLMATCLQHEMDHLEGVLFIDHLSRLKRNMALKK 180

Query: 162 MSKL 165
           + KL
Sbjct: 181 LEKL 184


>gi|254473716|ref|ZP_05087111.1| peptide deformylase [Pseudovibrio sp. JE062]
 gi|211957102|gb|EEA92307.1| peptide deformylase [Pseudovibrio sp. JE062]
          Length = 175

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 113/170 (66%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+  LR    PIE IN +I  L D+ML+ MY   GIGLAA QIGV+ R+ V
Sbjct: 1   MTIREIKFVPEACLREKCAPIEDINDEIRTLADDMLQTMYDAPGIGLAASQIGVMKRMFV 60

Query: 61  IDL------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +D+      +D +  K PMVFINP+I   S++ + YQEGCLSIP    DV+R A + V +
Sbjct: 61  LDVAERESEEDDSVEKEPMVFINPEITWSSEEKNTYQEGCLSIPGIYEDVERPAEVRVSF 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ++   + Q I A GLLATC+QHELDHLNG+LFID+LSRLKRD I KKM K
Sbjct: 121 LNIEGEKQEIEAGGLLATCIQHELDHLNGVLFIDYLSRLKRDRIVKKMIK 170


>gi|27383220|ref|NP_774749.1| peptide deformylase [Bradyrhizobium japonicum USDA 110]
 gi|39930882|sp|Q89BN9|DEF_BRAJA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|27356394|dbj|BAC53374.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110]
          Length = 174

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 117/171 (68%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+PIEK+ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKQLRLVSKPIEKVTTEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60

Query: 61  IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL    ++   +  P VFINP++I  S++ SVY+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKRDENGETKPEPRVFINPEVIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + +     A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK  K  +
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEKAAK 171


>gi|217977312|ref|YP_002361459.1| peptide deformylase [Methylocella silvestris BL2]
 gi|254767594|sp|B8ENG6|DEF_METSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|217502688|gb|ACK50097.1| peptide deformylase [Methylocella silvestris BL2]
          Length = 196

 Score =  175 bits (443), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 120/171 (70%), Gaps = 3/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PD  LR V+RP+  ++S++  L+D+MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MPLRPIIILPDKRLRLVARPVASVDSEVRALMDDMLETMYEAPGIGLAATQIAVDRRVIV 60

Query: 61  IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +D+   +D + + +P+   NP+I+  S++ S Y+EGCLSIP++  +V R   + V Y+D 
Sbjct: 61  LDVAKRRDDSAKADPICLANPEILWASEELSSYEEGCLSIPEFYEEVFRPEKVRVGYLDR 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + + + I ADGLLATCLQHE+DHLNG+LFIDH+SRLKR  I KK  K  +L
Sbjct: 121 DGRRREIEADGLLATCLQHEIDHLNGVLFIDHISRLKRARIIKKFEKAAKL 171


>gi|84685501|ref|ZP_01013399.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666658|gb|EAQ13130.1| peptide deformylase [Rhodobacterales bacterium HTCC2654]
          Length = 173

 Score =  175 bits (443), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 118/170 (69%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++I PDP L++ +  +  +  +++ L D+MLE MY   GIGLAA Q+GVL RL+V
Sbjct: 1   MALKPILIHPDPRLKKEAEKVRDVTDELLTLADDMLETMYDAPGIGLAAPQVGVLQRLIV 60

Query: 61  ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D ++D +    P+V  NP++I  SDD +VY+EGCLSIPD  A+V R A + VR+++   
Sbjct: 61  LDCIKDESAEPQPLVMFNPEVILSSDDTNVYEEGCLSIPDQYAEVTRPAAVKVRWLNRAG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q    +GL ATC+QHE+DHLNG LFID+LS +KR MIT+K  KL + R
Sbjct: 121 EEQERDFEGLWATCVQHEIDHLNGKLFIDYLSPMKRQMITRKSQKLKRER 170


>gi|260752714|ref|YP_003225607.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552077|gb|ACV75023.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 177

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 115/170 (67%), Gaps = 4/170 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PDP LR  S  +E  + ++  LID+M E MY   GIGLAA+Q+GV  RL+VIDLQ
Sbjct: 5   PILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLVIDLQ 64

Query: 65  ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D   ++NPMVFINP++    ++  +Y EGCLS+PD  A+V+R + I  ++ D +  
Sbjct: 65  QPEEDGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQDRDGN 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K  +LR+
Sbjct: 125 FHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174


>gi|154250717|ref|YP_001411541.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
 gi|154154667|gb|ABS61884.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
          Length = 173

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 111/155 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS+P+E++++D+  L+D+MLE MY+  GIGLAA+QIGV  +++V
Sbjct: 1   MAIREIITAPDPRLKEVSKPVERVDADLRALMDDMLETMYAAPGIGLAAIQIGVPKQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  FINP+I+  S+D +VY+EGCLS+P++  DV+R A   VRY+D   +
Sbjct: 61  MDLAREGEEPQPRYFINPEILWTSEDVAVYEEGCLSVPEFYEDVERPARCRVRYLDYQGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +    D LLATCLQHE+DHL GILFIDHLSR KR
Sbjct: 121 IREEECDDLLATCLQHEMDHLKGILFIDHLSRTKR 155


>gi|304392301|ref|ZP_07374242.1| peptide deformylase [Ahrensia sp. R2A130]
 gi|303295405|gb|EFL89764.1| peptide deformylase [Ahrensia sp. R2A130]
          Length = 193

 Score =  174 bits (440), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 122/181 (67%), Gaps = 18/181 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PDPILR  S+ +E+++ ++   +D+M + MY   GIGLAAVQ+G   R+ V+D  
Sbjct: 5   PIVHLPDPILRVRSQEVERVDDELRKFLDDMADTMYDAPGIGLAAVQVGEPRRIFVVDCS 64

Query: 65  DH------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           +                     +++P+  INPKI+TFSD+ S+Y+EGCLSIPDY A+V+R
Sbjct: 65  ERAEAEEEAEDDAPIRAEAVEEKRDPIFLINPKIVTFSDEPSMYEEGCLSIPDYYAEVER 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            A   + ++D + + Q + ADGLL+TC+QHE+DHL+G LFIDH+S+LK++M+ KK +K+ 
Sbjct: 125 PATCRIEFLDRDGKEQSLEADGLLSTCIQHEMDHLDGTLFIDHISKLKKNMVIKKFTKIA 184

Query: 167 Q 167
           +
Sbjct: 185 K 185


>gi|85713819|ref|ZP_01044809.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
 gi|85699723|gb|EAQ37590.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
          Length = 175

 Score =  174 bits (440), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 117/172 (68%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIEK+  +I  L D+M E MY   GIGLA +QI    R++ 
Sbjct: 1   MAIREIIILPDKQLRLVSRPIEKVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60

Query: 61  IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL    +D      P +FINP+I++ S++ SVY+EGCLSIP+Y  +V+R A + +R+ D
Sbjct: 61  MDLARRDEDGELNPRPRIFINPEILSASEELSVYEEGCLSIPEYYEEVERPARVRIRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +     A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK +K  +L
Sbjct: 121 LDGKLHEEDAEGLFATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAKL 172


>gi|254456015|ref|ZP_05069444.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083017|gb|EDZ60443.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 172

 Score =  174 bits (440), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 117/165 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P+P+LR+VS+P++++  +   L+D+MLE MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MTIKTIITEPNPLLRQVSKPVDQVGKEEQILMDDMLETMYDAPGIGLAAIQVGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I       S Y+EGCLS+P+  A++ R +   V Y+D + +
Sbjct: 61  MDISKEEGKKEPRYFVNPVIKNKDSIKSTYEEGCLSVPNQFAEIDRPSKCEVEYLDYHGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SKL
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKL 165


>gi|148556945|ref|YP_001264527.1| peptide deformylase [Sphingomonas wittichii RW1]
 gi|166198523|sp|A5VDM3|DEF_SPHWW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148502135|gb|ABQ70389.1| peptide deformylase [Sphingomonas wittichii RW1]
          Length = 177

 Score =  173 bits (439), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 113/165 (68%), Gaps = 5/165 (3%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PDP LR +S P+E ++ ++  LI +M E MY   GIGLAA+Q+GV  R++VIDLQ+    
Sbjct: 10  PDPRLRTISTPVEAVDDELRALIADMFETMYDAPGIGLAAIQVGVPKRVLVIDLQEEEDA 69

Query: 70  -----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                ++P VFINP++   S++ SVY EGCLS+P+  A+V+R A I  R++D        
Sbjct: 70  EGKPIRHPRVFINPELFDPSEEQSVYNEGCLSVPEQYAEVERPAVIHARWLDEQGAKHEE 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +GLLATCLQHE+DHL GILFIDHLSRLKR+M+ KK+ K  + R
Sbjct: 130 RLEGLLATCLQHEMDHLEGILFIDHLSRLKREMVMKKLEKARRAR 174


>gi|71083162|ref|YP_265881.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123748062|sp|Q4FNG1|DEF_PELUB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71062275|gb|AAZ21278.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 172

 Score =  173 bits (439), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P+ +LR++S+P+E +  +   L+D+ML+ MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MSVKSILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I   +D  S Y+EGCLS+PD  A+++R     V Y+D N +
Sbjct: 61  MDISRDEDKKEPRYFVNPVIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+   R
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169


>gi|197103839|ref|YP_002129216.1| polypeptide deformylase [Phenylobacterium zucineum HLK1]
 gi|238690164|sp|B4RDT8|DEF_PHEZH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|196477259|gb|ACG76787.1| polypeptide deformylase [Phenylobacterium zucineum HLK1]
          Length = 169

 Score =  173 bits (438), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 113/156 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ P P L++VS+P+EK++ ++  L+D+MLE MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MAIREILVVPHPALKQVSQPVEKVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL      K P  F+NP+I+  SDD + Y+EGCLS+P+Y  +V+R A + +RY++   +
Sbjct: 61  MDLAREGEEKQPRYFVNPEILWASDDTAPYEEGCLSVPEYYDEVERPARVKLRYLNYQGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
                A+GL A C+QHE+DHL G+LFIDHLSRLKR+
Sbjct: 121 QVEEDAEGLFAVCIQHEMDHLEGVLFIDHLSRLKRE 156


>gi|56551709|ref|YP_162548.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762296|ref|ZP_04760377.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|81789136|sp|Q9REQ2|DEF_ZYMMO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|6685122|gb|AAF23793.1|AF213822_8 polypeptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543283|gb|AAV89437.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373199|gb|EER62829.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 177

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 114/170 (67%), Gaps = 4/170 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PDP LR  S  +E  + ++  LID+M E MY   GIGLAA+Q+GV  RL+VIDLQ
Sbjct: 5   PILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLVIDLQ 64

Query: 65  DHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                   ++NPMVFINP++    ++  +Y EGCLS+PD  A+V+R + I  ++ D +  
Sbjct: 65  QPEEGGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQDRDGN 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K  +LR+
Sbjct: 125 FHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174


>gi|84500579|ref|ZP_00998828.1| peptide deformylase [Oceanicola batsensis HTCC2597]
 gi|84391532|gb|EAQ03864.1| peptide deformylase [Oceanicola batsensis HTCC2597]
          Length = 172

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 117/167 (70%), Gaps = 1/167 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID- 62
           +P++I PDP L++V+ P+  I  ++    D+MLE MY   GIGLA  QIG++ RL+V+D 
Sbjct: 3   RPILIHPDPRLKKVAEPVADITDELRTTADDMLETMYDAPGIGLAGPQIGLMARLIVLDC 62

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +++      P+V  NP+++  SD+ SVY+EGCLSIPD  A+V+R A +TV ++D +   Q
Sbjct: 63  VKEETLPPRPLVMFNPRVVASSDEKSVYEEGCLSIPDQYAEVERPAEVTVEWLDRDGVLQ 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               DGL ATC+QHE+DHLNG LFID++S +KR MIT+KM KL + R
Sbjct: 123 EESFDGLWATCVQHEIDHLNGKLFIDYISPIKRQMITRKMQKLKRER 169


>gi|89070116|ref|ZP_01157446.1| peptide deformylase [Oceanicola granulosus HTCC2516]
 gi|89044337|gb|EAR50480.1| peptide deformylase [Oceanicola granulosus HTCC2516]
          Length = 176

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 114/166 (68%), Gaps = 1/166 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+P++I PDP L+  + P+ +I  ++  L D+MLE MY   GIGLAA Q+GVL R++V
Sbjct: 4   MTKRPILIHPDPRLKTAATPVGEITDEVRRLADDMLETMYDAPGIGLAAPQVGVLKRVLV 63

Query: 61  ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D ++D      P+V  +P+I+  SD  +VY+EGCLSIPD  A+V+R A + VR+ D   
Sbjct: 64  MDCVKDEGEAPRPLVLCDPEIVWTSDARNVYEEGCLSIPDQYAEVERPAEVEVRWTDLEG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             +    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL
Sbjct: 124 GARRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKL 169


>gi|254467295|ref|ZP_05080706.1| peptide deformylase [Rhodobacterales bacterium Y4I]
 gi|206688203|gb|EDZ48685.1| peptide deformylase [Rhodobacterales bacterium Y4I]
          Length = 182

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 117/169 (69%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  ++ D+  L D+MLE MY+  GIGLAA QIG+L RL+V+
Sbjct: 11  MKRPILIHPDPRLKKVCAAVPDLSDDLRVLADDMLETMYAAPGIGLAAPQIGILQRLIVL 70

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +++      P+V  NP+II  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 71  DCVKEEDGDPRPLVMFNPEIIASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRSGN 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 131 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 179


>gi|149913450|ref|ZP_01901983.1| peptide deformylase [Roseobacter sp. AzwK-3b]
 gi|149812570|gb|EDM72399.1| peptide deformylase [Roseobacter sp. AzwK-3b]
          Length = 174

 Score =  171 bits (434), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 115/165 (69%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V  P+  ++ D+  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKVCAPLGDLSDDLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVM 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D ++       P+V  NP+I+  SD  +VY+EGCLSIP+  A+VKR   + VR++D +  
Sbjct: 61  DCVKGENETPRPLVMFNPEIVASSDVMNVYEEGCLSIPEEYAEVKRPEAVDVRWIDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q    DGL ATC+QHE+DHLNG LFID+L  +KR MIT++M KL
Sbjct: 121 EQTETFDGLWATCVQHEIDHLNGKLFIDYLGPMKRQMITRRMQKL 165


>gi|85707836|ref|ZP_01038902.1| polypeptide deformylase [Erythrobacter sp. NAP1]
 gi|85689370|gb|EAQ29373.1| polypeptide deformylase [Erythrobacter sp. NAP1]
          Length = 190

 Score =  171 bits (434), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 117/188 (62%), Gaps = 21/188 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS P+  ++ N ++  L ++M E MY   GIGLAA+Q+GV  RL
Sbjct: 1   MAIREILEVPDPRLKVVSEPVREDEFNDELKQLAEDMFETMYDAPGIGLAAIQVGVPKRL 60

Query: 59  VVIDLQ----------------DHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           +VIDLQ                 H H   +K P VF+NP I+  +D+ S Y EGCLS+P+
Sbjct: 61  LVIDLQPDDPDAEPVECEHDGHKHTHPATKKEPRVFVNPVILDPADELSTYNEGCLSVPE 120

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             ADV R A  TV+Y D +  H     +GLLATCLQHE+DHL GILFIDHLSRLKR+M  
Sbjct: 121 IYADVDRPATCTVKYQDLDGNHHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRNMAL 180

Query: 160 KKMSKLVQ 167
           KK+ KL Q
Sbjct: 181 KKLKKLRQ 188


>gi|89052957|ref|YP_508408.1| peptide deformylase [Jannaschia sp. CCS1]
 gi|88862506|gb|ABD53383.1| peptide deformylase [Jannaschia sp. CCS1]
          Length = 174

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++I PDP L++V+ P+  +  ++  L DNML  MY   GIGLAA Q+GV  RL+V+
Sbjct: 1   MKLPILIHPDPRLKKVAAPVPDVTDELRALADNMLSTMYDAPGIGLAAPQVGVGQRLIVL 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +        P+   NP++I  SD+ + Y EGCLSIPD  ADV R   +TVR+MD N  
Sbjct: 61  DCEKGDDVTPRPLAMFNPEVIASSDEMNTYDEGCLSIPDIYADVTRPEAVTVRWMDVNGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL G LFID+LS LKR +IT+KM KL + R
Sbjct: 121 EQEETFDGLWATCVQHEIDHLEGKLFIDYLSGLKRQLITRKMVKLKRDR 169


>gi|146337885|ref|YP_001202933.1| peptide deformylase [Bradyrhizobium sp. ORS278]
 gi|158514293|sp|A4YLB9|DEF_BRASO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146190691|emb|CAL74695.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
           sp. ORS278]
          Length = 175

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 117/171 (68%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+P+EK+  +I  L+D+M + MY   GIGLAA+Q+    R++ 
Sbjct: 1   MSLREIIILPDRQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60

Query: 61  IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL         ++ P VFINP+II  SD+ SVY+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKPDSGGETKREPRVFINPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   +   A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +
Sbjct: 121 LDGVVREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAK 171


>gi|254429252|ref|ZP_05042959.1| peptide deformylase [Alcanivorax sp. DG881]
 gi|196195421|gb|EDX90380.1| peptide deformylase [Alcanivorax sp. DG881]
          Length = 168

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 116/165 (70%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P+EK++ ++  LID+M+E MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMIETMYDASGIGLAATQVNVHQRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P V+INP+I   +D+ + Y+EGCLS+P +   VKR+A + +  +D +  
Sbjct: 61  MDLSEE--RNEPKVYINPQITPLTDELAPYEEGCLSVPGFYEKVKRAARVRINALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+
Sbjct: 119 AFEVEADELLATCIQHEIDHLDGKLFVDYVSRLKRDRIKKKLEKI 163


>gi|148258522|ref|YP_001243107.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
 gi|158513291|sp|A5ESQ7|DEF_BRASB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146410695|gb|ABQ39201.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
          Length = 175

 Score =  171 bits (433), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 117/171 (68%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+P+EK+  +I  L+D+M + MY   GIGLAA+Q+    R++ 
Sbjct: 1   MSLREIIILPDKQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60

Query: 61  IDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL         ++ P VFINP+II  SD+ S+Y+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKPDAGGETKREPRVFINPEIIAKSDELSIYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   +   A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +
Sbjct: 121 LDGVLREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVLKKFTKAAK 171


>gi|91974563|ref|YP_567222.1| peptide deformylase [Rhodopseudomonas palustris BisB5]
 gi|123722270|sp|Q13F18|DEF_RHOPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91681019|gb|ABE37321.1| peptide deformylase [Rhodopseudomonas palustris BisB5]
          Length = 175

 Score =  171 bits (432), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++  +I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+  ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y ADV+R A + +RY D +
Sbjct: 61  MDIVRKEGNGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYADVERPAVVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHL+G+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLDGVLFVDHLSKLKRAMVVRKFEKAAK 169


>gi|108761299|ref|YP_629687.1| peptide deformylase [Myxococcus xanthus DK 1622]
 gi|108465179|gb|ABF90364.1| peptide deformylase [Myxococcus xanthus DK 1622]
          Length = 177

 Score =  170 bits (431), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 116/170 (68%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV++ ++I+PDP+L++ ++P+ K++     L+ +M E MYS +G+GLAA QIGVL R++V
Sbjct: 1   MVRE-ILIWPDPVLKQKAKPVAKVDDSTRTLVKDMFETMYSAEGVGLAAPQIGVLQRVIV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+  INP+II    D + Y EGCLSIP   ADV R+A +TV+++D + Q
Sbjct: 60  LDTTHSQPELKPVAMINPEIIAMEGD-TTYNEGCLSIPGEAADVDRAAVVTVKFLDPDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q +  DGLL+  +QHE DHLNG +F+DH+S LKR+ I K+M +L   R+
Sbjct: 119 EQTLRCDGLLSIAVQHETDHLNGTVFVDHISSLKREFIRKRMKRLKTSRE 168


>gi|39933698|ref|NP_945974.1| peptide deformylase [Rhodopseudomonas palustris CGA009]
 gi|192289055|ref|YP_001989660.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
 gi|81698398|sp|Q6NC51|DEF_RHOPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229487564|sp|B3QCH1|DEF_RHOPT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|39647544|emb|CAE26065.1| putative N-formylmethionylaminoacyl-tRNA deformylase
           [Rhodopseudomonas palustris CGA009]
 gi|192282804|gb|ACE99184.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
          Length = 175

 Score =  170 bits (431), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVTEVTTEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+  ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGDGKSDPRAFINPEIVGASSEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169


>gi|75677243|ref|YP_319664.1| formylmethionine deformylase [Nitrobacter winogradskyi Nb-255]
 gi|74422113|gb|ABA06312.1| peptide deformylase [Nitrobacter winogradskyi Nb-255]
          Length = 187

 Score =  170 bits (430), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 114/172 (66%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIE +  +I  L D+M E MY   GIGLA +QI    R+V 
Sbjct: 13  MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIVT 72

Query: 61  IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL    ++      P VFINP+I++ S++ SVY+EGCLSIP+Y   V+R + + +R+ D
Sbjct: 73  MDLARRDEEGELTPRPRVFINPEILSASEELSVYEEGCLSIPEYYEAVERPSRVRIRFTD 132

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +     A+GL ATC+QHE+DHLNG+LF+DHLS+LKRD + KK +K  + 
Sbjct: 133 LDGKVHEEDAEGLFATCIQHEIDHLNGVLFVDHLSKLKRDRVMKKFTKAAKF 184


>gi|86747799|ref|YP_484295.1| peptide deformylase [Rhodopseudomonas palustris HaA2]
 gi|123099181|sp|Q2J2C6|DEF_RHOP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|86570827|gb|ABD05384.1| peptide deformylase [Rhodopseudomonas palustris HaA2]
          Length = 175

 Score =  170 bits (430), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++  +I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+  ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGNGKSDPRAFINPEIVGASAELNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q +   ADGL ATC+QHE+DHLNG+LF+DH+S+LK+ M+ +K  K  +
Sbjct: 121 GQVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKKAMVVRKFEKAAK 169


>gi|163738219|ref|ZP_02145635.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
 gi|163743813|ref|ZP_02151186.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161382962|gb|EDQ07358.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161388835|gb|EDQ13188.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
          Length = 172

 Score =  170 bits (430), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  ++  +  L D+MLE MY+  GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKVCAAVPDMSDALRTLADDMLETMYAAPGIGLAAPQIGVLDRLIVL 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +++      P+V  NP+++  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 61  DCVKEEDGPARPLVMFNPEVVASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|90422323|ref|YP_530693.1| peptide deformylase [Rhodopseudomonas palustris BisB18]
 gi|123089811|sp|Q21B62|DEF_RHOPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|90104337|gb|ABD86374.1| peptide deformylase [Rhodopseudomonas palustris BisB18]
          Length = 175

 Score =  169 bits (429), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 116/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+E +++++  L D+M E MY   GIGLAA+Q+    RL+ 
Sbjct: 1   MALREIIIIPDKQLRLISKPVETVSAEVRRLADDMFETMYEAPGIGLAAIQVAQPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +DL  ++      P  FINP++I+ S++ +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDLVRKEGNSLTEPRAFINPEVISASEEMNVYEEGCLSIPEYYAEVERPKQVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DH+S+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKRAMVMRKFEKAAK 169


>gi|92119150|ref|YP_578879.1| peptide deformylase [Nitrobacter hamburgensis X14]
 gi|122990031|sp|Q1QH78|DEF_NITHX RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91802044|gb|ABE64419.1| peptide deformylase [Nitrobacter hamburgensis X14]
          Length = 175

 Score =  169 bits (429), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/172 (45%), Positives = 115/172 (66%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIE +  +I  L D+M E MY   GIGLA +QI    R++ 
Sbjct: 1   MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60

Query: 61  IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL    ++      P +FINP+I++ S++ S Y+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLARRDEEGELTPRPRIFINPEILSASEELSTYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +     A+G+ ATC+QHE+DHLNG+LF+DH+S+LKRD + KK +K  +L
Sbjct: 121 LDGKVHEEDAEGIYATCIQHEIDHLNGVLFVDHISKLKRDRVVKKFTKAAKL 172


>gi|83309342|ref|YP_419606.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
           AMB-1]
 gi|82944183|dbj|BAE49047.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
           AMB-1]
          Length = 190

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 114/160 (71%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PDP+L+  S+P+  ++  I  L+ +ML+ MY   GIGLAA QIGVL R++V+D+ 
Sbjct: 25  PILTAPDPVLKSKSKPVATVDDRIRTLLADMLDTMYHAPGIGLAAPQIGVLERVIVMDIG 84

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                + P+  +NP+I+  SD+ + Y+EGCLS+P++ ++V R A + VRY+D     Q I
Sbjct: 85  RKEEDRAPIRMVNPEIVWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGAKQEI 144

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLAT +QHE+DHL+GILFIDHLS LKR+MI +K+ K
Sbjct: 145 LADGLLATVVQHEMDHLDGILFIDHLSSLKRNMILRKLLK 184


>gi|254510174|ref|ZP_05122241.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
 gi|221533885|gb|EEE36873.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
          Length = 172

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 112/165 (67%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P+  I  D+  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRNILIHPDPRLKKVCAPVADITDDLRKLADDMLETMYDAPGIGLAAPQIGVLDRLIVV 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +++      P+V  NP++I  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 61  DCVKEEGETPRPLVMFNPQVIASSDEINVYEEGCLSIPDQYAEVTRPRTVDVTWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q    D L ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL
Sbjct: 121 LQQETFDDLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKL 165


>gi|316932090|ref|YP_004107072.1| peptide deformylase [Rhodopseudomonas palustris DX-1]
 gi|315599804|gb|ADU42339.1| peptide deformylase [Rhodopseudomonas palustris DX-1]
          Length = 175

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTTEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+  ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGDGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVREEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169


>gi|297182651|gb|ADI18809.1| N-formylmethionyl-tRNA deformylase [uncultured SAR11 cluster
           bacterium HF4000_37C10]
          Length = 185

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 119/175 (68%), Gaps = 11/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P+ +LR  S  +E+++ D+  L+D+MLE MY+  GIGLAA+Q+GV  R++V
Sbjct: 1   MALREILTEPNKLLREKSLAVEEVDEDLQKLMDDMLETMYAAPGIGLAAIQVGVPKRVIV 60

Query: 61  IDL-----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D+           +    RKNPM F+NP+II  S + S+Y+EGCLS+P   A++ RS  
Sbjct: 61  LDIRWRDKSESTSDEKQVERKNPMCFVNPEIIAKSTNNSIYEEGCLSVPGQFAEIARSDK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             V+Y+D   Q +   A+G+LATC+QHE+DHL GILFID+LS+LK+ MI KK++K
Sbjct: 121 CHVKYLDYYGQPKEFVAEGMLATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAK 175


>gi|85373243|ref|YP_457305.1| peptide deformylase [Erythrobacter litoralis HTCC2594]
 gi|123409710|sp|Q2NCT3|DEF_ERYLH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|84786326|gb|ABC62508.1| polypeptide deformylase [Erythrobacter litoralis HTCC2594]
          Length = 194

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 119/192 (61%), Gaps = 25/192 (13%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS P++  + N D+  L+D+M E MY+  GIGLAA+Q+GV  R+
Sbjct: 1   MAIREILEVPDPRLKTVSEPVQPDEFNDDLKQLVDDMFETMYAAPGIGLAAIQVGVPKRV 60

Query: 59  VVIDLQD--------------------HAH---RKNPMVFINPKIITFSDDFSVYQEGCL 95
           +VIDLQ+                    H H   + +P +FINP+II  +++ S YQEGCL
Sbjct: 61  LVIDLQEPDMDAEPEECGHDHGDGEGAHKHYPVKNDPRIFINPEIIDPNEELSTYQEGCL 120

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           S+P+  ADV R    TV+Y D   +      DGLLATCLQHE+DHL GILFIDHLSRLK+
Sbjct: 121 SVPEIYADVDRPKTCTVKYQDLTGKTHQEDLDGLLATCLQHEMDHLEGILFIDHLSRLKK 180

Query: 156 DMITKKMSKLVQ 167
            M  KK+ K+ Q
Sbjct: 181 QMALKKLKKMRQ 192


>gi|23016537|ref|ZP_00056292.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 170

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 114/160 (71%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PDP+L+  S+P+  ++  I  L+ +MLE MY   GIGLAA QIGVL R++V+D+ 
Sbjct: 5   PILTAPDPVLKSKSKPVAAVDDRIRALLADMLETMYHAPGIGLAAPQIGVLERVIVMDIG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                + P+  +NP+II  SD+ + Y+EGCLS+P++ ++V R A + VRY+D     Q +
Sbjct: 65  RKEEDRAPIRMVNPEIIWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGAKQEL 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLAT +QHE+DHL+G+LFIDHLS LKR+MI +K+ K
Sbjct: 125 LAEGLLATVVQHEMDHLDGVLFIDHLSSLKRNMILRKLLK 164


>gi|163744872|ref|ZP_02152232.1| peptide deformylase [Oceanibulbus indolifex HEL-45]
 gi|161381690|gb|EDQ06099.1| peptide deformylase [Oceanibulbus indolifex HEL-45]
          Length = 172

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 116/165 (70%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P+++ PDP L++ + P+  ++ ++  L D+ML  MY   GIGLAA Q+GVL R++V+
Sbjct: 1   MKRPILLHPDPRLKKAAAPVADLSDELRVLGDDMLATMYDAPGIGLAAPQVGVLSRVIVL 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +++      P++  NP+I+  SDD + Y+EGCLSIP+  ADV R A + VR++D + +
Sbjct: 61  DCVKEEGEAPRPLLMFNPEIVASSDDLNTYEEGCLSIPEQFADVTRPAEVEVRWLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL
Sbjct: 121 EQREGFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKL 165


>gi|149201578|ref|ZP_01878552.1| peptide deformylase [Roseovarius sp. TM1035]
 gi|149144626|gb|EDM32655.1| peptide deformylase [Roseovarius sp. TM1035]
          Length = 172

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 118/166 (71%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP LR+V  P++ +   +  L  +MLE MY   GIGLAA Q+GV+ RL+V+
Sbjct: 1   MKRSILIHPDPRLRKVCTPVKDVTDALRKLSQDMLETMYDAPGIGLAAPQVGVMDRLIVL 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA- 119
           D ++D      P+V +NP+I  FS++ SVY+EGCLSIPD  ADV R A + +R+MD +  
Sbjct: 61  DCVKDEGATPRPIVMLNPEITAFSEEKSVYEEGCLSIPDQFADVTRPAEVEMRWMDLDGV 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +HQ  +  GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL
Sbjct: 121 EHQEGFG-GLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKL 165


>gi|323142780|ref|ZP_08077493.1| peptide deformylase [Succinatimonas hippei YIT 12066]
 gi|322417425|gb|EFY08046.1| peptide deformylase [Succinatimonas hippei YIT 12066]
          Length = 175

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 112/167 (67%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V FPD  LR++  P+ + ++ +  L D+M E MY  +GIGLAA QIG+  R+VV
Sbjct: 1   MAIREIVTFPDERLRQICAPVTEFDAALKELTDDMFETMYDDEGIGLAAPQIGIEKRIVV 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+  +D    KN +V INPKI T  +     +EGCLS+P+YRA++KR   IT+   D N
Sbjct: 61  IDIPEEDGKQGKNKLVLINPKI-TAKEGEVASEEGCLSVPEYRAEIKRYEKITLECQDLN 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q QI  ADGLLA C+QHELDHL+G LFID+LSRLKRD +  K  KL
Sbjct: 120 GQKQIYEADGLLAICMQHELDHLDGKLFIDYLSRLKRDRLLTKYRKL 166


>gi|115522683|ref|YP_779594.1| peptide deformylase [Rhodopseudomonas palustris BisA53]
 gi|122297684|sp|Q07TX0|DEF_RHOP5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|115516630|gb|ABJ04614.1| peptide deformylase [Rhodopseudomonas palustris BisA53]
          Length = 180

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 111/169 (65%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR  S+P+E ++ ++  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIIVPDKQLRLTSKPVETVSPEVRKLADDMFETMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +DL  ++   +  P  FINP+II  S +  VY+EGCLSIP+Y A+V+R A + +RY D +
Sbjct: 61  MDLVRKEGNGKTEPRAFINPEIIGASTETRVYEEGCLSIPEYYAEVERPAQVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  ADGL ATC+QHE+DHLNG LFIDH+SRLKR ++ +K  K  +
Sbjct: 121 GHVHEEDADGLFATCIQHEIDHLNGTLFIDHISRLKRALVMRKFEKAAK 169


>gi|56698051|ref|YP_168422.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
 gi|56679788|gb|AAV96454.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
          Length = 172

 Score =  167 bits (422), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 118/169 (69%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P+  I+ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRAILIHPDPRLKKVCAPVADISDELRALADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +++ +    P+V  NP+++  SD+ ++Y+EGCLSIP+  A+V R   + V ++D + +
Sbjct: 61  DCVKEESAPARPLVMFNPRVVAASDETNIYEEGCLSIPEQYAEVTRPKVVDVEWIDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|254477024|ref|ZP_05090410.1| peptide deformylase [Ruegeria sp. R11]
 gi|214031267|gb|EEB72102.1| peptide deformylase [Ruegeria sp. R11]
          Length = 189

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 116/171 (67%), Gaps = 5/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  +   +  L D+MLE MY+  G+GLAA QIGVL RL+V+
Sbjct: 18  MKRPILIHPDPRLKKVCAEVPDLTDAMRTLADDMLETMYAAPGVGLAAPQIGVLDRLIVL 77

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM--DCN 118
           D  ++      P+V  NPKI++ SD+ +VY+EGCLSIPD  A+V R   + V +M  D N
Sbjct: 78  DCAKEDEESPRPLVMFNPKIVSASDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMNRDGN 137

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A  +    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 138 AARETF--DGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 186


>gi|85705033|ref|ZP_01036133.1| peptide deformylase [Roseovarius sp. 217]
 gi|85670355|gb|EAQ25216.1| peptide deformylase [Roseovarius sp. 217]
          Length = 172

 Score =  166 bits (421), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP LR+V  P+  ++  +  L  +M E MY   GIGLAA Q+GV+ RL+V+
Sbjct: 1   MKRSILIHPDPRLRKVCTPVTDVSDALRKLSQDMFETMYDAPGIGLAAPQVGVMDRLIVL 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D ++D      P+  +NP+I  FSD  SVY+EGCLSIPD  ADV R A + VR+MD +  
Sbjct: 61  DCVKDEGATPRPIAMLNPEITAFSDQTSVYEEGCLSIPDQFADVTRPAEVEVRWMDLDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL
Sbjct: 121 EHKEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKL 165


>gi|114770091|ref|ZP_01447629.1| peptide deformylase [alpha proteobacterium HTCC2255]
 gi|114548928|gb|EAU51811.1| peptide deformylase [alpha proteobacterium HTCC2255]
          Length = 172

 Score =  166 bits (421), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 109/161 (67%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+++ PDP L+++  P++ ++++   L D+M+E MY   G+GLAA Q+    R+ V+D  
Sbjct: 5   PILLHPDPRLKKLCVPVQSVDAETRKLADSMIETMYDAPGVGLAAPQVASDARIFVMDCT 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D      P+V INP+II+ S++ + Y EGCLS+PD   DV+R   + + ++D + +    
Sbjct: 65  DSESDNQPLVLINPEIISVSEELNTYSEGCLSLPDLFEDVERPKQVRMSFLDIDGKQHNE 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             DGL ATC QHELDHLNG+LFIDHLSR+KR M+TKKM KL
Sbjct: 125 LFDGLWATCAQHELDHLNGVLFIDHLSRMKRSMMTKKMVKL 165


>gi|262277954|ref|ZP_06055747.1| peptide deformylase [alpha proteobacterium HIMB114]
 gi|262225057|gb|EEY75516.1| peptide deformylase [alpha proteobacterium HIMB114]
          Length = 171

 Score =  166 bits (420), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 77/148 (52%), Positives = 106/148 (71%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PDPILR+ S  + K+++DI  L+DNMLE MY   GIGLAA Q+G+L +++VIDL      
Sbjct: 10  PDPILRKKSDEVSKVDNDIRALMDNMLETMYQAPGIGLAAPQVGILKKVIVIDLAKEDEP 69

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           K P+   NPKII  SD+ S  +EGCLSIP Y A+V R     ++Y+D + + Q I A+ L
Sbjct: 70  KKPLFIANPKIIWKSDELSSREEGCLSIPGYFAEVVRPTKCKLQYLDYDGKQQEIEAEDL 129

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDM 157
           L+TC+QHE+DH +G+LFID+LS+LK+DM
Sbjct: 130 LSTCIQHEVDHCDGVLFIDYLSKLKKDM 157


>gi|312115223|ref|YP_004012819.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220352|gb|ADP71720.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 176

 Score =  166 bits (420), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 114/170 (67%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD ILR  S+ +E ++ ++  L ++MLE MY+  GIGLAAVQIGVL RL+V
Sbjct: 1   MAIRSIITIPDAILRETSKTVETVDDEVRALANDMLETMYAAPGIGLAAVQIGVLRRLIV 60

Query: 61  IDLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D Q    + KNP+V INP+I+T  D   V++EGCLSIP   A+V+R A + VRY+D   
Sbjct: 61  MDAQKGDEKGKNPVVLINPEILTHGDTPRVHEEGCLSIPQMYAEVERPALVRVRYVDAEG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q      L AT +QHE+DHL G LFIDHLSRLKR ++ +K  KL + R
Sbjct: 121 KQQERDFSDLEATLVQHEIDHLEGRLFIDHLSRLKRTLLIRKYHKLQRER 170


>gi|86137254|ref|ZP_01055832.1| peptide deformylase [Roseobacter sp. MED193]
 gi|85826578|gb|EAQ46775.1| peptide deformylase [Roseobacter sp. MED193]
          Length = 172

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  ++I PDP L+++  P+  ++  +  L D+MLE MY+  GIGLAA QIGV+ RL+V+
Sbjct: 1   MKHSILIHPDPRLKKICAPVADLSDKLRLLADDMLETMYAAPGIGLAAPQIGVMERLIVL 60

Query: 62  DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D + +      P+V  NP+II+ S++ +VY+EGCLSIPD  A+V R   + V+++D N  
Sbjct: 61  DCEKEEGVEPKPLVMFNPEIISSSEETNVYEEGCLSIPDQYAEVTRPRDVEVQWLDRNGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 QQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|126738021|ref|ZP_01753742.1| peptide deformylase [Roseobacter sp. SK209-2-6]
 gi|126720518|gb|EBA17223.1| peptide deformylase [Roseobacter sp. SK209-2-6]
          Length = 172

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++I PDP L++   P+  ++  +  L D+MLE MY+  GIGLAA QIG++ RL+V+
Sbjct: 1   MKHPILIHPDPRLKKTCVPVADLSDKLRILADDMLETMYAAPGIGLAAPQIGIMQRLIVL 60

Query: 62  DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D + +      P+V  NP+I+  S++ +VY+EGCLSIP+  A+V R   + VR++D +  
Sbjct: 61  DCEKEEGSSGKPLVMFNPEILASSEETNVYEEGCLSIPEQFAEVTRPKVVDVRWIDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 EQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|99082420|ref|YP_614574.1| peptide deformylase [Ruegeria sp. TM1040]
 gi|99038700|gb|ABF65312.1| peptide deformylase [Ruegeria sp. TM1040]
          Length = 174

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++++  +  ++ D+  L D+MLE MY+  GIGLAA QIGVL RL+V+
Sbjct: 1   MKRSILIHPDPRLKKIATDVPDLSDDLRALADDMLETMYAAPGIGLAAPQIGVLDRLIVM 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +++      P+V  NP++I  SD+ +VY+EGCLSIP+  A+V R   + V +MD +  
Sbjct: 61  DCVKEGEGDARPLVMFNPRVIASSDETNVYEEGCLSIPEQYAEVTRPKVVDVEWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|119943871|ref|YP_941551.1| peptide deformylase [Psychromonas ingrahamii 37]
 gi|119862475|gb|ABM01952.1| peptide deformylase [Psychromonas ingrahamii 37]
          Length = 167

 Score =  166 bits (419), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 108/157 (68%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+E+I  ++    +NM+E MY  +G+GLAA Q+    RLVVID+ +   
Sbjct: 9   FPDKRLRTIAKPVEQITVELKKTAENMIETMYEEEGVGLAATQVNFHRRLVVIDVSEQ-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   MV INP I+  S +  + +EGCLS+P+  A+VKR+ F+T+ Y+D   + Q++ ADG
Sbjct: 67  RNQAMVIINPVIVEHSGE-EISEEGCLSVPETNAEVKRAEFVTLEYLDIEGKQQVLKADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA CLQHE+DHLNG LFID+LS LK+  I  K+ KL
Sbjct: 126 LLAVCLQHEIDHLNGKLFIDYLSPLKQKRIKTKLEKL 162


>gi|114766694|ref|ZP_01445633.1| peptide deformylase [Pelagibaca bermudensis HTCC2601]
 gi|114541084|gb|EAU44139.1| peptide deformylase [Roseovarius sp. HTCC2601]
          Length = 173

 Score =  166 bits (419), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 114/170 (67%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++   P+  ++  +  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKACAPVPDLSDKLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60

Query: 62  DLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    D      P+V  NP+++  SD+ +VY+EGCLSIPD  A+V+R   + V ++D + 
Sbjct: 61  DCAKADDGEAPRPLVMFNPQVVASSDERNVYEEGCLSIPDQYAEVERPKVVDVEWLDRDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 TLQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRDR 170


>gi|110678658|ref|YP_681665.1| peptide deformylase [Roseobacter denitrificans OCh 114]
 gi|109454774|gb|ABG30979.1| peptide deformylase [Roseobacter denitrificans OCh 114]
          Length = 175

 Score =  166 bits (419), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 114/165 (69%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ +++ PDP L++ + P+  I+ ++  L D+MLE MY   GIGLAA Q+G+L R+VV+
Sbjct: 4   MKRSIILHPDPRLKKTAEPVADISDELRRLGDDMLETMYDAPGIGLAAPQVGILQRVVVM 63

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +++      P++  NP++I  SD+ SVY+EGCLSIP+  A+V R A + VR+MD +  
Sbjct: 64  DCIKEPGDTPRPVIMFNPEVIATSDETSVYEEGCLSIPEQFAEVTRPAEVEVRWMDRDGA 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q     GL ATC QHE+DHL+G LFID+L  L+R MIT+KM KL
Sbjct: 124 AQSEVFTGLWATCAQHEIDHLDGKLFIDYLRPLRRQMITRKMVKL 168


>gi|163733890|ref|ZP_02141332.1| peptide deformylase [Roseobacter litoralis Och 149]
 gi|161393001|gb|EDQ17328.1| peptide deformylase [Roseobacter litoralis Och 149]
          Length = 175

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 114/165 (69%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ +++ PDP L++++ P+  I+ ++  L D+MLE MY   GIGLAA Q+G+L R+ V+
Sbjct: 4   MKRSIILHPDPRLKKIAAPVADISDELRQLGDDMLETMYDAPGIGLAAPQVGILQRVFVM 63

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +++      P+V  NP++I  SD+ +VY+EGCLSIP+  ADV R A + +R+MD +  
Sbjct: 64  DCVKEPGETPRPIVMFNPEVIATSDETNVYEEGCLSIPEQFADVTRPADVELRWMDRDGA 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q     GL ATC QHE+DHL+G LFID+L  LKR MIT+KM KL
Sbjct: 124 EQTEVFTGLWATCAQHEIDHLDGKLFIDYLRPLKRQMITRKMVKL 168


>gi|110832992|ref|YP_691851.1| peptide deformylase [Alcanivorax borkumensis SK2]
 gi|122959726|sp|Q0VTE1|DEF_ALCBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110646103|emb|CAL15579.1| peptide deformylase [Alcanivorax borkumensis SK2]
          Length = 168

 Score =  165 bits (417), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 116/166 (69%), Gaps = 4/166 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P+EK++ ++  LID+M E MY+  GIGLAA Q+ V  +L+V
Sbjct: 1   MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMFETMYAAPGIGLAATQVDVHIQLIV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +DL +DH     PMVFINP+I   +++ + Y+EGCLS+P +   V R A + +  +D + 
Sbjct: 61  MDLSEDH---NKPMVFINPQITPLTEEQAPYEEGCLSVPGFYEKVTRPARVRINALDRDG 117

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
               + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+
Sbjct: 118 NAFEVEADELLATCIQHEMDHLDGKLFVDYVSRLKRDRIKKKLEKI 163


>gi|83859278|ref|ZP_00952799.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633]
 gi|83852725|gb|EAP90578.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633]
          Length = 175

 Score =  164 bits (416), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS+P++ ++  +  L+D+M+E MY+ DGIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILTVPDPRLKLVSKPVDAVDDALRALMDDMVETMYAADGIGLAAIQVGVDKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL D   R +P  ++NP I   ++D   YQEGCLS+PD    V+R   + V Y+D + +
Sbjct: 61  MDLSDE--RNDPRYYVNPVITPLTEDLKPYQEGCLSVPDVFDSVERPKKVKVEYLDYDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   A+ L A C+QHE+DHL G++FID+LSRLKRD   KK+ KLV+ R
Sbjct: 119 KREEIAEDLFAVCIQHEMDHLEGVVFIDYLSRLKRDRAVKKVQKLVKQR 167


>gi|326388512|ref|ZP_08210106.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206977|gb|EGD57800.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 189

 Score =  164 bits (416), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 113/185 (61%), Gaps = 20/185 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L++VS+P+E  + ++  L+ +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILEVPDPRLKQVSKPVEVFDDELKTLVADMFETMYDAPGIGLAAIQVGVPLRVLV 60

Query: 61  IDLQD--------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           IDLQ                        +K P+VFINP + + S+D +VY EGCLS+P+ 
Sbjct: 61  IDLQPDDPDAEPEVCTAHGGHHHTHQPTKKEPLVFINPVLSSLSEDLAVYNEGCLSVPEI 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+V R + I  R+ D +        D LLATCLQHE+DHL GILFIDHLSRLKR M  K
Sbjct: 121 YAEVTRPSRIHARWQDLDGNVHEAEIDDLLATCLQHEMDHLEGILFIDHLSRLKRQMALK 180

Query: 161 KMSKL 165
           K+ KL
Sbjct: 181 KLEKL 185


>gi|296535343|ref|ZP_06897545.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
 gi|296264327|gb|EFH10750.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
          Length = 177

 Score =  164 bits (416), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 114/169 (67%), Gaps = 4/169 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ PD  LR  +RP+   +++ +  L   ML  MY   GIGLAA QIG L RLVV+DL
Sbjct: 8   PILLVPDARLRAKARPVGPGDTETVRALAPRMLATMYKAPGIGLAAPQIGELLRLVVVDL 67

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           Q    +  P V INP+I+  S + S  +EGCLS+P+  A+V R A I VR++D     + 
Sbjct: 68  QPD-EKPEPYVMINPEIVAASTELSSREEGCLSLPNQYAEVTRPAEIKVRWLDLEGAKRE 126

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV--QLRD 170
           + ADGLLATC+QHE+DHLNG+LF+DHLS LKR+M+ +K++K +  Q RD
Sbjct: 127 MQADGLLATCIQHEIDHLNGVLFVDHLSALKRNMLLRKLAKELKAQARD 175


>gi|254460256|ref|ZP_05073672.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
 gi|206676845|gb|EDZ41332.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 172

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 1/161 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           ++I PDP L++V   +  I+  I +  D+MLE MY+  GIGLAA Q+GVL R++V+D ++
Sbjct: 5   ILIHPDPRLKKVCAAVPDISDKIRSFADDMLETMYTAPGIGLAAPQVGVLERMIVLDCVK 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  P+V +NP++I  SD+ +VY EGCLSIPD  ADV R   + V ++D +   Q  
Sbjct: 65  EDGAKPEPLVMVNPRVIAASDETNVYDEGCLSIPDQYADVTRPKEVRVEWLDLDGNLQKR 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             DGL ATC+QHE+DHL G LFID+L  LKR MIT+KM KL
Sbjct: 125 DMDGLWATCVQHEIDHLEGKLFIDYLKPLKRQMITRKMQKL 165


>gi|16124527|ref|NP_419091.1| polypeptide deformylase [Caulobacter crescentus CB15]
 gi|221233212|ref|YP_002515648.1| peptide deformylase [Caulobacter crescentus NA1000]
 gi|23396553|sp|Q9ABF5|DEF_CAUCR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767574|sp|B8GYE3|DEF_CAUCN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|13421407|gb|AAK22259.1| polypeptide deformylase [Caulobacter crescentus CB15]
 gi|220962384|gb|ACL93740.1| peptide deformylase [Caulobacter crescentus NA1000]
          Length = 173

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 105/151 (69%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L+++S P+E +  ++  L+D+MLE MY   GIGLAAVQ+G   R++V+DL      K P 
Sbjct: 18  LKKISTPVEAVTDELRALMDDMLETMYDAPGIGLAAVQVGEPVRVIVMDLAREGEDKAPR 77

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
            F+NP+I+  S+D   Y+EGCLS+P+Y  +V+R + +T+RYM+   +  +  A+GL A C
Sbjct: 78  YFVNPEILASSEDLQGYEEGCLSVPEYYDEVERPSKVTLRYMNYQGETVVEEAEGLFAVC 137

Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +QHE+DHL G+LFIDHLSRL+RD    K+ K
Sbjct: 138 IQHEMDHLEGVLFIDHLSRLRRDRAMAKVKK 168


>gi|209965583|ref|YP_002298498.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
 gi|209959049|gb|ACI99685.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
          Length = 173

 Score =  164 bits (414), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 112/161 (69%), Gaps = 1/161 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I PD  LR+ + P+  ++  +  L+D+MLE MY   GIGLAA Q+GVL R++V+D+ +
Sbjct: 6   ILIVPDARLRQTAEPVANVDGRVARLMDDMLETMYKAPGIGLAAPQVGVLERVIVMDIAE 65

Query: 66  H-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++  NP+II  SD+ +  QEGCLSIPD  ADV R   + VRY+D + + + +
Sbjct: 66  RKTEAPTPILMANPEIIARSDELATAQEGCLSIPDIYADVTRPRQVRVRYVDRDGEVREL 125

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            ADGL ATC+QHE+DHLNG+LF+D+LS LKR M+ +++ K+
Sbjct: 126 DADGLTATCVQHEIDHLNGVLFVDYLSALKRSMLLRRLQKM 166


>gi|83951626|ref|ZP_00960358.1| peptide deformylase [Roseovarius nubinhibens ISM]
 gi|83836632|gb|EAP75929.1| peptide deformylase [Roseovarius nubinhibens ISM]
          Length = 172

 Score =  163 bits (413), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 112/165 (67%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V  P++ I+  +  L D+MLE MY   GIGLA  QIGV+ R++V+
Sbjct: 1   MKRPILIHPDPRLKKVCAPLDDISDAVRALADDMLETMYDAPGIGLAGPQIGVMDRIIVM 60

Query: 62  DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D + D      P+V +NP++I  SD  + Y+EGCLSIPD  A+V R   + VR++  + +
Sbjct: 61  DCEKDEGVDPAPLVMVNPEVIASSDTLNTYEEGCLSIPDQFAEVTRPKEVEVRWLGLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                 DGL ATC+QHE+DHL+G LFID+L  +KR +IT+KM KL
Sbjct: 121 EHSRGFDGLWATCVQHEIDHLDGKLFIDYLGTMKRQLITRKMVKL 165


>gi|294085060|ref|YP_003551820.1| peptide deformylase protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664635|gb|ADE39736.1| peptide deformylase protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 177

 Score =  163 bits (413), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 111/161 (68%), Gaps = 5/161 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++  PDP+LR  +  + ++   I NL+D+M   MY   GIGLAA QI +  RL+V+D   
Sbjct: 11  IIKLPDPVLREKAVAVPEVTDGIRNLLDDMAVTMYDAPGIGLAAPQINISERLIVMDC-- 68

Query: 66  HAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
               + P ++  INP+II  S+D S+ +EGCLSIPD  A+V R A +TVRY D +   Q+
Sbjct: 69  -GKDETPELYKMINPEIIETSEDKSILEEGCLSIPDQTAEVTRPATVTVRYTDIDGDTQM 127

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + A+GLLA C+QHE+DHLNG+LFIDH+SRLKRDMI +++ K
Sbjct: 128 LTAEGLLAACVQHEIDHLNGVLFIDHISRLKRDMIIRRVMK 168


>gi|259417507|ref|ZP_05741426.1| peptide deformylase [Silicibacter sp. TrichCH4B]
 gi|259346413|gb|EEW58227.1| peptide deformylase [Silicibacter sp. TrichCH4B]
          Length = 174

 Score =  163 bits (413), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/169 (46%), Positives = 117/169 (69%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++++  +  ++ ++  L D+MLE MY+  GIGLAA QIG+L RL+V+
Sbjct: 1   MKRSILIHPDPRLKKIAADVPDLSDELRALADDMLETMYAAPGIGLAAPQIGILDRLIVL 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +++      P+V  NP++I  SD+ +VY+EGCLSIP+  A+V R   + V ++D +  
Sbjct: 61  DCVKEGEGEARPLVMFNPRVIAASDETNVYEEGCLSIPEQYAEVTRPKVVDVEWLDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|126733797|ref|ZP_01749544.1| Peptide deformylase [Roseobacter sp. CCS2]
 gi|126716663|gb|EBA13527.1| Peptide deformylase [Roseobacter sp. CCS2]
          Length = 173

 Score =  163 bits (413), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 114/166 (68%), Gaps = 1/166 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PDP L++V+ P+  +N D+  L D+MLE MY   GIGLAA QI V+ R++V
Sbjct: 1   MALRNILIHPDPRLKKVATPVPSVNDDLRRLADDMLETMYDAPGIGLAAPQIAVMNRMLV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  ++      PMV INP+++  S++ +VY+EGCLSIP+  A+V+R   + V + + + 
Sbjct: 61  MDCAKEDDATPEPMVLINPEVVWTSEEQNVYEEGCLSIPEQYAEVERPTEVEVTWTNLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           Q +    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL
Sbjct: 121 QAKRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKL 166


>gi|254419890|ref|ZP_05033614.1| peptide deformylase [Brevundimonas sp. BAL3]
 gi|196186067|gb|EDX81043.1| peptide deformylase [Brevundimonas sp. BAL3]
          Length = 192

 Score =  163 bits (413), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 111/173 (64%), Gaps = 16/173 (9%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH------ 66
           IL++VS+P+  ++  +  L+D+MLE MY+  GIGLAAVQ+G L R++V+DL D       
Sbjct: 17  ILKQVSKPVAAVDDAVRALMDDMLETMYAAPGIGLAAVQVGALDRVIVMDLGDRDGTICE 76

Query: 67  ----------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                       RKNP  F NP+I+  SD+   Y+EGCLSIP+Y   V+R A + +RY++
Sbjct: 77  TEEEDTPEAAEARKNPRFFANPEILWTSDELYTYEEGCLSIPEYFDKVERPARVRIRYLN 136

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + Q     A+GL A C+QHE+DHLNG+LFIDHLSRLKRD    K+ K  + R
Sbjct: 137 RDGQSVEEEAEGLYAVCIQHEMDHLNGVLFIDHLSRLKRDRAVTKVKKAARDR 189


>gi|149185875|ref|ZP_01864190.1| Peptide deformylase [Erythrobacter sp. SD-21]
 gi|148830436|gb|EDL48872.1| Peptide deformylase [Erythrobacter sp. SD-21]
          Length = 188

 Score =  163 bits (413), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 116/184 (63%), Gaps = 19/184 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS P+ + + ++  L+ +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILEVPDPRLKVVSEPVTEFDDELRELVSDMFETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQ----------------DHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           IDLQ                +H H   +K P VF+NP+I+  ++D + YQEGCLS+PD  
Sbjct: 61  IDLQPEDEDAEGEVCNHGGHEHVHYPTKKEPRVFVNPEILDPAEDLATYQEGCLSVPDIF 120

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           ADV R A   VRY D   +      +GL+ATCLQHE+DHL GILFIDHLSRLKR+M  KK
Sbjct: 121 ADVDRPATCRVRYQDLEGETHEEELEGLMATCLQHEMDHLEGILFIDHLSRLKRNMALKK 180

Query: 162 MSKL 165
           + KL
Sbjct: 181 LKKL 184


>gi|295691230|ref|YP_003594923.1| peptide deformylase [Caulobacter segnis ATCC 21756]
 gi|295433133|gb|ADG12305.1| peptide deformylase [Caulobacter segnis ATCC 21756]
          Length = 173

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 105/152 (69%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +L+++S P+E +  ++  L+D+MLE MY   GIGLAAVQ+G   R++ +DL        P
Sbjct: 17  VLKKISTPVEVVTDELRALMDDMLETMYDAPGIGLAAVQVGEPVRVITMDLAREGEEPAP 76

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
             F+NP+I+  S++  VY+EGCLS+P+Y  +V+R A +T+RYM+   +  +  A+GL A 
Sbjct: 77  RYFVNPEILASSEEMFVYEEGCLSVPEYFDEVERPAKVTLRYMNYQGETVVEEAEGLFAV 136

Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           C+QHE+DHL G+LFIDHLSRL+RD    K+ K
Sbjct: 137 CIQHEMDHLEGVLFIDHLSRLRRDRAIAKVKK 168


>gi|170742368|ref|YP_001771023.1| peptide deformylase [Methylobacterium sp. 4-46]
 gi|168196642|gb|ACA18589.1| peptide deformylase [Methylobacterium sp. 4-46]
          Length = 173

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 109/167 (65%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  I  ++  L  +MLE MY   G+GLAA+Q+G   R+V 
Sbjct: 1   MTIRPLVILPDARLRVTSSPVGTITGEVRKLAADMLETMYDAPGVGLAAIQVGEPTRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       + P+V I+P+I+  S++   Y+EGCLSIP+Y A+V R   + VR+   + +
Sbjct: 61  IDTSKDKEARTPLVLIDPEIVWSSEETRAYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHELDHLNG+LFIDH+S+LKRD + KK +K  +
Sbjct: 121 TVEQEADGLLATCLQHELDHLNGVLFIDHISKLKRDRVMKKFAKAAK 167


>gi|159042735|ref|YP_001531529.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
 gi|157910495|gb|ABV91928.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
          Length = 187

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 106/169 (62%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L++   P+ +I  +I  L D+ML  MY   GIGLA  Q+  + R++ 
Sbjct: 14  MTIRPILIHPDPRLKKTVDPVAEITDEIRQLADDMLATMYDAPGIGLAGPQVAAMTRIIT 73

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D        +PMV INP+I+  S++ + Y+EGCLSIP+  ADV+R A + VR+      
Sbjct: 74  MDCAPKDGEPDPMVLINPEIVWSSEEMNTYEEGCLSIPEMYADVERPAEVEVRWTTLEGG 133

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                  GL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 134 DASARWGGLHATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRER 182


>gi|220924615|ref|YP_002499917.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
 gi|219949222|gb|ACL59614.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
          Length = 173

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 110/167 (65%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  I  ++  L  +MLE MY   G+GLAA+QIG   R+V 
Sbjct: 1   MTIRPLVILPDARLRVTSEPVGTITGEVRKLASDMLETMYDAPGVGLAAIQIGEPTRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       +NP+V ++P+I+  S++   Y+EGCLSIP+Y A+V R   + VR+   + +
Sbjct: 61  VDTSKDKEARNPLVLLDPEIVWASEETRSYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDH+S+LKRD + KK +K  +
Sbjct: 121 VVEQEADGLLATCLQHEIDHLNGVLFIDHISKLKRDRVLKKFAKAAK 167


>gi|254436643|ref|ZP_05050137.1| peptide deformylase [Octadecabacter antarcticus 307]
 gi|198252089|gb|EDY76403.1| peptide deformylase [Octadecabacter antarcticus 307]
          Length = 178

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 113/166 (68%), Gaps = 1/166 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ PDP L+ V+ P+  ++  +  L D+MLE MY+  GIGLAA Q+G++ R++V
Sbjct: 4   MTLRSILLHPDPRLKSVADPVATVDKTLHALADDMLETMYNAPGIGLAAPQLGIMQRMLV 63

Query: 61  ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D ++D      PMV INP++I  S D ++Y EGCLSIPD  A+V+R A + V +M+ + 
Sbjct: 64  MDCIKDDMETPQPMVLINPRVIFASSDTNIYDEGCLSIPDQYAEVERPAVVKVEWMNLDG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q      L ATC+QHE+DHLNG LFID+L  L+R MIT+KM KL
Sbjct: 124 KTQQEEFSDLWATCVQHEIDHLNGKLFIDYLKPLRRQMITRKMQKL 169


>gi|330806738|ref|YP_004351200.1| peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374846|gb|AEA66196.1| Peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 168

 Score =  161 bits (408), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 106/157 (67%), Gaps = 2/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+  T +D+   YQEGCLS+P +  +V R   + ++ +D + Q   + A+G
Sbjct: 67  RSEPRVFINPEFETLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPYELIAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKL 163


>gi|119383399|ref|YP_914455.1| peptide deformylase [Paracoccus denitrificans PD1222]
 gi|119373166|gb|ABL68759.1| peptide deformylase [Paracoccus denitrificans PD1222]
          Length = 173

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 111/170 (65%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ PDP L+++  P+ +I  +I  L  +ML  MY   G+GLAA Q+GVL RL V
Sbjct: 1   MTLRSIILHPDPRLKKICEPVARITPEIETLAADMLATMYDAPGVGLAAPQVGVLSRLYV 60

Query: 61  IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D + D    +NP+V +NP++   S+  + Y+EGCLSIP+  ADV R A + VR++  + 
Sbjct: 61  MDCEKDPEAPRNPIVMVNPEVTWTSEALNTYEEGCLSIPEQYADVTRPAEVRVRWLGLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +      +GL ATC QHE+DHL+G LFIDHL  +KR MIT+KM KL + R
Sbjct: 121 KTHEREFEGLWATCAQHEIDHLDGRLFIDHLGPIKRQMITRKMVKLKRER 170


>gi|84514541|ref|ZP_01001905.1| peptide deformylase [Loktanella vestfoldensis SKA53]
 gi|84511592|gb|EAQ08045.1| peptide deformylase [Loktanella vestfoldensis SKA53]
          Length = 173

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/166 (50%), Positives = 112/166 (67%), Gaps = 1/166 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L++V+ P+  I+ D+  L D+MLE MY   GIGLAA Q+ V+ R++V
Sbjct: 1   MTIRPILIHPDPRLKKVTAPVASIDDDLRRLADDMLETMYEAPGIGLAAPQVAVMRRVIV 60

Query: 61  IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D Q D      PMV INP+II  S+  SVY EGCLSIP+  A+V R A + V ++  + 
Sbjct: 61  MDCQKDAEATPEPMVLINPEIIWSSEATSVYDEGCLSIPEQYAEVTRPAEVEVAWLGLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q    DGL ATC+QHE+DHL+G LFID L  LKR MIT+KM KL
Sbjct: 121 KPQRARFDGLWATCVQHEIDHLDGKLFIDCLGPLKRQMITRKMQKL 166


>gi|77464452|ref|YP_353956.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|126463292|ref|YP_001044406.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|221640344|ref|YP_002526606.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|332559341|ref|ZP_08413663.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
 gi|77388870|gb|ABA80055.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|126104956|gb|ABN77634.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|221161125|gb|ACM02105.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|332277053|gb|EGJ22368.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
          Length = 177

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P++I PDP L+++  P+ +I  D+  L D+ML  MY   GIGLAA Q+GV+ RL+V+D 
Sbjct: 3   RPILIHPDPRLKKICDPVGQITDDLRRLADDMLATMYDAPGIGLAAPQVGVVRRLIVLDC 62

Query: 64  QDHA-HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              +   + P+  +NP+++  S+D S Y+EGCLS+P+  ADV+R A + VR+   + + +
Sbjct: 63  NKESDGARRPVAMVNPEVVWRSEDVSTYEEGCLSLPNVFADVERPAEVKVRWTGLDGREE 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                GL ATC+QHE+DHL+G LFID+L  LKR MIT+KM K 
Sbjct: 123 EEQFAGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKF 165


>gi|226942187|ref|YP_002797260.1| peptide deformylase [Azotobacter vinelandii DJ]
 gi|259645177|sp|C1DFV8|DEF_AZOVD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|226717114|gb|ACO76285.1| Formylmethionine deformylase protein [Azotobacter vinelandii DJ]
          Length = 168

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 105/156 (67%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++PIE ++  I  LID+M E MY+  GIGLAA Q+ V  RLVV+DL +   
Sbjct: 9   FPDPRLRTIAKPIETVDDGIRRLIDDMFETMYAAPGIGLAATQVNVHKRLVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+    +++   YQEGCLS+P +  +V R   + +R +D + Q   + A+G
Sbjct: 67  KNEPRVFINPEFEALTEELEPYQEGCLSVPGFYENVDRPQKVRIRALDRDGQPFELVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162


>gi|144898454|emb|CAM75318.1| peptide deformylase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 170

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/159 (49%), Positives = 109/159 (68%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++  PDP L++ +  +  +++ I  L+D+MLE MY+  GIGLAA Q+ V  R++V D+  
Sbjct: 6   ILTAPDPRLKQKAAVVADVDASIRTLMDDMLETMYAAPGIGLAAPQVAVGKRVIVADIGR 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               + P+  +NP+I+  SDD + Y+EGCLS+P++ A V R   I VRY D    HQ I 
Sbjct: 66  SEDDRQPVRMVNPEIVWVSDDDNTYEEGCLSVPEHYAAVVRPRAIRVRYRDETGTHQEID 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLAT LQHE+DHL+GILFIDHLS LKR+MI +K+ K
Sbjct: 126 ADGLLATVLQHEMDHLDGILFIDHLSSLKRNMILRKLLK 164


>gi|115372443|ref|ZP_01459752.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|310819504|ref|YP_003951862.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|115370656|gb|EAU69582.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|309392576|gb|ADO70035.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 173

 Score =  160 bits (406), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 112/167 (67%), Gaps = 1/167 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++I+P P+L++ +RP+ K++  +  L+ +M E MY+ DG+GLAA Q+G+L R++V+D 
Sbjct: 3   REILIWPHPVLKQKARPVAKVDDAVRALVKDMFETMYAADGVGLAAPQVGILQRIIVLDT 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+  INP+I+   +  + Y EGCLSIP    DV R+A +TV+++D + Q Q 
Sbjct: 63  TPRQPDSKPLAMINPEIVGM-EGATTYTEGCLSIPGEAEDVDRAAIVTVKFLDVDGQEQT 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +  D LLA  +QHE DHL+G +F+DH+S LKR++I K+M +L   R+
Sbjct: 122 LTCDDLLAIAVQHETDHLDGTVFVDHVSSLKREIIRKRMKRLKTERE 168


>gi|294678913|ref|YP_003579528.1| peptide deformylase [Rhodobacter capsulatus SB 1003]
 gi|294477733|gb|ADE87121.1| peptide deformylase-2 [Rhodobacter capsulatus SB 1003]
          Length = 178

 Score =  160 bits (406), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 109/166 (65%), Gaps = 1/166 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L+++  P+  ++  I  L D+MLE MY   G+GLAA QIGV+ R+ V
Sbjct: 3   MTTRPILIHPDPRLKKLCDPVAALDDTIRQLADDMLETMYDAPGVGLAAPQIGVMSRIFV 62

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  ++       MV INP+I   S++ +V++EGCLS+P+  ADV R   + +R++  + 
Sbjct: 63  MDCAKEKTGFPEAMVMINPEITWVSEEKNVHEEGCLSLPEQYADVTRPKEVRMRWLGLDG 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           Q      DGL ATC QHELDHLNG LFIDHL  LKR M+T+K+ KL
Sbjct: 123 QMHEEQFDGLWATCAQHELDHLNGKLFIDHLGPLKRQMVTRKLEKL 168


>gi|146276205|ref|YP_001166364.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554446|gb|ABP69059.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 177

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 111/164 (67%), Gaps = 3/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++I PDP L+++  P+ +I  D+  L D+ML  MY   GIGLAA Q+GV+ RLVV+D 
Sbjct: 3   RSILIHPDPRLKKICDPVAEITDDLRRLADDMLATMYDAPGIGLAAPQVGVMRRLVVMDC 62

Query: 64  --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
             Q  A R+ P+  INP+++  S+D S Y+EGCLS+P+  A+V+R A + VR+   + + 
Sbjct: 63  NKQPEAPRR-PIAMINPQVVWASEDLSTYEEGCLSLPNVFAEVERPAEVKVRWTGIDGRE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +     GL ATC+QHE+DHL+G LFID+L  LKR MIT+KM K 
Sbjct: 122 EEEQFSGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKF 165


>gi|163795436|ref|ZP_02189403.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
 gi|159179422|gb|EDP63953.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
          Length = 175

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 108/153 (70%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PDP+L+   R ++ ++ ++  LID+M + MY   G+GLAA Q+GV  R++V+D+ 
Sbjct: 5   PIIWAPDPVLKTKCRSVDVVDDEVRRLIDDMFQTMYFAPGVGLAAPQVGVTKRVIVVDVA 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               +  P+  +NP+I+  SD   +Y+EGCLS+P+  ADV+R++ + VRY+D +   Q I
Sbjct: 65  GKDEKPQPIALVNPEIVWRSDATQIYEEGCLSLPELYADVERASHVKVRYLDRDGAEQKI 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
             +GLLA CLQHE+DH++G+LF+DH+S LKR++
Sbjct: 125 EGEGLLAVCLQHEIDHIDGVLFVDHISALKRNI 157


>gi|226327658|ref|ZP_03803176.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198]
 gi|225204184|gb|EEG86538.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198]
          Length = 172

 Score =  160 bits (405), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 84/166 (50%), Positives = 110/166 (66%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           PL+ FPD  LRRV+ P+EK++ +I  LID+M+E MY+  GIGLAA Q+ V  R+VVID+ 
Sbjct: 5   PLLRFPDERLRRVAVPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           ++  R  P+  INP+II+  D+     +GCLSIPD  A  +R  F+ VR +D N     +
Sbjct: 65  EN--RDQPIALINPEIISTEDEVMDMMDGCLSIPDSFAPTERYRFLKVRALDRNGDEIEL 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            A  L A C+QHELDHL+G LFIDHLS LKR  I KK  KL +L D
Sbjct: 123 EASDLFAGCIQHELDHLDGKLFIDHLSPLKRQRIEKKQKKLSKLID 168


>gi|21233177|ref|NP_639094.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770117|ref|YP_244879.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188993325|ref|YP_001905335.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|39931165|sp|Q8P4F9|DEF2_XANCP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21115026|gb|AAM43006.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575449|gb|AAY50859.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167735085|emb|CAP53297.1| Peptide deformylase [Xanthomonas campestris pv. campestris]
          Length = 170

 Score =  160 bits (405), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 111/164 (67%), Gaps = 6/164 (3%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  + P+   E ++     L+D+M + MY   GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +   +  P VFINP+I+T   +  VYQEGCLS+P   ADV R+  ITVRY+D   Q 
Sbjct: 65  DVSEE--KDAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAITVRYLDRQGQP 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           Q +  DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++KL
Sbjct: 122 QELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKL 165


>gi|294625234|ref|ZP_06703874.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666267|ref|ZP_06731518.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600462|gb|EFF44559.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603976|gb|EFF47376.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 170

 Score =  160 bits (405), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 111/163 (68%), Gaps = 6/163 (3%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ D   R  P VF+NP+I++   +  +YQEGCLS+P   ADV R+  ITVRY+D   Q 
Sbjct: 65  DISDE--RNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQGQP 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K
Sbjct: 122 QELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164


>gi|126728524|ref|ZP_01744340.1| peptide deformylase [Sagittula stellata E-37]
 gi|126711489|gb|EBA10539.1| peptide deformylase [Sagittula stellata E-37]
          Length = 175

 Score =  160 bits (404), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V   +  ++ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRSIIIHPDPRLKKVCDAVPDLSDELHVLADDMLETMYDAPGIGLAAPQIGVLSRLIVL 60

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    D+     P+V  NP++I  SD+ +VY+EGCLSIP+  A+V+R   + V ++D + 
Sbjct: 61  DCAKSDNGEDARPLVMFNPRVIASSDEQNVYEEGCLSIPEQYAEVERPRVVDVEWLDRDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +    DGL ATC+QHE+DHL+G LFID+L  L+R MIT+KM KL + R
Sbjct: 121 MLRTETFDGLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMVKLKKER 170


>gi|315497920|ref|YP_004086724.1| peptide deformylase [Asticcacaulis excentricus CB 48]
 gi|315415932|gb|ADU12573.1| peptide deformylase [Asticcacaulis excentricus CB 48]
          Length = 178

 Score =  160 bits (404), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 111/165 (67%), Gaps = 9/165 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++  P P+L++VS+P+E  +  ++  L+D+MLE MY   GIGLAA+QIG   R++
Sbjct: 1   MAIRDIITVPHPLLKQVSKPVEGGVTDELRALMDDMLETMYDAPGIGLAAIQIGEPIRVI 60

Query: 60  VIDLQ--------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           V+DLQ        D    K P  F+NP+II  S++ S Y EGCLS+P+   +VKR A + 
Sbjct: 61  VMDLQERPDDLPEDAPAPKQPRYFVNPEIIWASEELSTYDEGCLSVPEVYDEVKRPARVR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
           ++Y++   +  I   DGL ATC+QHE+DHLNG+LFIDHLS+LKRD
Sbjct: 121 LKYLNYQGEEVIEECDGLYATCIQHEMDHLNGVLFIDHLSKLKRD 165


>gi|237806929|ref|YP_002891369.1| peptide deformylase [Tolumonas auensis DSM 9187]
 gi|259645187|sp|C4L7Y4|DEF_TOLAT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|237499190|gb|ACQ91783.1| peptide deformylase [Tolumonas auensis DSM 9187]
          Length = 167

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 112/159 (70%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR+++ PIEKI SD+ ++I++M E MY  +GIGLAA Q+ +  RLVV+D  ++  
Sbjct: 9   FPDERLRKIATPIEKITSDLEHIIEDMFETMYLEEGIGLAATQVNIHKRLVVVDTSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  PMVFINP++I    +  + +EGCLS+P+ RA V R+ +I VR +D + +   I ADG
Sbjct: 67  RDQPMVFINPELIEKRGETGI-EEGCLSVPECRAFVPRAEWIKVRALDRHGEPFEIEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA CLQHE+DHL G LF+D+LS LKR  I +K+ KL +
Sbjct: 126 LLAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAR 164


>gi|293611136|ref|ZP_06693434.1| peptide deformylase [Acinetobacter sp. SH024]
 gi|292826387|gb|EFF84754.1| peptide deformylase [Acinetobacter sp. SH024]
 gi|325124152|gb|ADY83675.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2]
          Length = 176

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 112/166 (67%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+VIDL 
Sbjct: 5   PILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   + +PMVFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q   +
Sbjct: 65  ES--KDDPMVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAFEL 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|302186428|ref|ZP_07263101.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
          Length = 168

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 105/156 (67%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +   + A+G
Sbjct: 67  RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLATC+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLATCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162


>gi|40062663|gb|AAR37584.1| polypeptide deformylase [uncultured marine bacterium 313]
          Length = 185

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 118/175 (67%), Gaps = 11/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P+ +LR  S  +++++ D+  L+++MLE MY+  GIGLAA+Q+GV  R++V
Sbjct: 1   MALRKILTEPNKLLREKSLTVKEVDEDLQKLMNDMLETMYAAPGIGLAAIQVGVPKRVIV 60

Query: 61  IDL-----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D+           +    RKNP+ F+NP+IIT S + S Y+EGCLS+P   A++ R   
Sbjct: 61  LDIGWRDKPESTNDEKQDERKNPIYFVNPEIITKSTNNSTYEEGCLSVPGQFAEIDRPDK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++Y+D   Q + + A+G+ ATC+QHE+DHL GILFID+LS+LK+ MI KK++K
Sbjct: 121 CHIKYLDYYGQPKELMAEGMFATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAK 175


>gi|153003639|ref|YP_001377964.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5]
 gi|152027212|gb|ABS24980.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5]
          Length = 185

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 111/166 (66%), Gaps = 1/166 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +VI+PDPIL+ V+ P+E+++  I  L+D+M E MY+ DG+GLAA QI VL R++VID 
Sbjct: 3   REIVIWPDPILKEVANPVERVDDSIRRLLDDMAETMYAADGVGLAAPQIAVLKRVIVIDT 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                 +  +  +NP+I+  ++  + + EGCLSIP    DV R+A + VR +D + +   
Sbjct: 63  SPRQEGQKLIHLVNPEIVR-AEGETTWTEGCLSIPGEAEDVARAAKVWVRALDYHGKPFE 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + AD LLA  +QHE DHLNG LF+DHLS LKR++I K+M KL   R
Sbjct: 122 LEADELLAIAVQHETDHLNGTLFVDHLSSLKRELIRKRMKKLKTQR 167


>gi|71737781|ref|YP_272335.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558334|gb|AAZ37545.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326682|gb|EFW82727.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331344|gb|EFW87287.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 168

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D N +   + A+G
Sbjct: 67  RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRNGKPYELVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162


>gi|114568993|ref|YP_755673.1| peptide deformylase [Maricaulis maris MCS10]
 gi|122316781|sp|Q0ASK2|DEF_MARMM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114339455|gb|ABI64735.1| peptide deformylase [Maricaulis maris MCS10]
          Length = 174

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 113/170 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDPIL+ VS+P+++++ D+  L+D+ML+ MY+ DGIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILTVPDPILKEVSQPVDQVDDDLRELMDDMLQTMYAADGIGLAAIQVGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  F+NP +   SD    Y+EGCLS+P    +++R   I ++Y+D +  
Sbjct: 61  MDLAGSDEEAKPRYFVNPVLSDPSDTLKPYEEGCLSVPTVYDEIERPDRIHIQYLDYDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+G+ A C+QHE+DHL G+LFID+LSRLKR    +K+ K+ + +D
Sbjct: 121 ECEEIAEGMFAVCIQHEMDHLEGVLFIDYLSRLKRQRAVQKVKKVEKSKD 170


>gi|260574964|ref|ZP_05842966.1| peptide deformylase [Rhodobacter sp. SW2]
 gi|259022969|gb|EEW26263.1| peptide deformylase [Rhodobacter sp. SW2]
          Length = 181

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L+++  P+ KI  +I  L ++MLE MY   GIGLAA Q+GV  +L+V+
Sbjct: 1   MKRTILIHPDPRLKKICEPVPKITVEIGRLAEDMLETMYDAPGIGLAAPQLGVTKQLIVM 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D ++D A    PM   NP +   S+D S Y+EGCLS+P+  A+++R + + VR+   +  
Sbjct: 61  DCVKDPALTARPMAMFNPVVTWASEDLSTYEEGCLSLPNQYAEIERPSEVRVRWTGLDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q  +  GL ATC+QHE+DHL+G LFID+L  L+R MIT+KM KL
Sbjct: 121 EQEEHFTGLWATCVQHEIDHLSGKLFIDYLRPLRRQMITRKMEKL 165


>gi|254487738|ref|ZP_05100943.1| peptide deformylase [Roseobacter sp. GAI101]
 gi|214044607|gb|EEB85245.1| peptide deformylase [Roseobacter sp. GAI101]
          Length = 174

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 112/166 (67%), Gaps = 1/166 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           ++K+ +++ PDP L+++  P+  +  ++  L D+ML  MY   GIGLAA QIGVL RL+V
Sbjct: 2   VMKRNIILHPDPRLKKLCAPVTDMTDELRALADDMLATMYDAPGIGLAAPQIGVLNRLIV 61

Query: 61  ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D +++   +  P++  NP++I  SD  S Y+EGCLSIPD  ADV R A + VR++D + 
Sbjct: 62  MDCVKEEGEKPRPLIMFNPEVIASSDIESTYEEGCLSIPDQFADVTRPAEVDVRWIDRDG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                    L ATC+QHE+DHL+G LFID+L  L+R MIT+KM+KL
Sbjct: 122 NEHTETFSKLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMTKL 167


>gi|71276449|ref|ZP_00652725.1| Formylmethionine deformylase [Xylella fastidiosa Dixon]
 gi|71901278|ref|ZP_00683377.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|170731000|ref|YP_001776433.1| peptide deformylase [Xylella fastidiosa M12]
 gi|238687947|sp|B0U4M4|DEF_XYLFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71162765|gb|EAO12491.1| Formylmethionine deformylase [Xylella fastidiosa Dixon]
 gi|71728969|gb|EAO31101.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|167965793|gb|ACA12803.1| Peptide deformylase [Xylella fastidiosa M12]
          Length = 170

 Score =  159 bits (401), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 111/163 (68%), Gaps = 6/163 (3%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R +V+
Sbjct: 5   PILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQRFMVV 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +   +  PMVFINP+I+T   D  V+QEGCLS+P   ADV R+  I VR++D +   
Sbjct: 65  DVSEE--KNAPMVFINPEIVTREGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDRHGDE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K
Sbjct: 122 QQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEK 164


>gi|86157152|ref|YP_463937.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773663|gb|ABC80500.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 185

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 109/166 (65%), Gaps = 1/166 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +VI+PDPIL+ V++P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VID 
Sbjct: 3   REIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVIDT 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                 +  +  +NP+I+    + + Y EGCLSIP    DV R A + VR +D   +   
Sbjct: 63  SPRQEGQTLLHLVNPEIVRGEGELT-YTEGCLSIPGEAEDVDRFARVWVRALDRQGKPFE 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + ADGLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 122 LEADGLLAVALQHETDHLNGTMFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|127514664|ref|YP_001095861.1| peptide deformylase [Shewanella loihica PV-4]
 gi|126639959|gb|ABO25602.1| peptide deformylase [Shewanella loihica PV-4]
          Length = 170

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 106/161 (65%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++PI + N+++   IDNM E MY   GIGLAA Q+   ++L+V+DLQD   
Sbjct: 9   FPDERLRTIAKPITEFNAELQTQIDNMFETMYEEKGIGLAATQVDYHHQLIVMDLQDDVE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFIN +II  S DF   +EGCLS+P   A V R+ F+T++ +D +     + ADG
Sbjct: 69  R--PKVFINLEIIEKSGDF-CNEEGCLSVPGIYAKVDRAEFVTIKALDRDGNEFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           L A CLQHELDHLNG LF+D+LS LKR  I +K+ K  +L 
Sbjct: 126 LFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARLE 166


>gi|299771931|ref|YP_003733957.1| peptide deformylase [Acinetobacter sp. DR1]
 gi|298702019|gb|ADI92584.1| peptide deformylase [Acinetobacter sp. DR1]
          Length = 176

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 111/166 (66%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+VIDL 
Sbjct: 5   PILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  P+VFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q   I
Sbjct: 65  EA--KDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAFEI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|258622990|ref|ZP_05718005.1| peptide deformylase [Vibrio mimicus VM573]
 gi|258584773|gb|EEW09507.1| peptide deformylase [Vibrio mimicus VM573]
          Length = 169

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/160 (49%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+EK+  +I  +ID+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 66  T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYSFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 162


>gi|161501956|ref|YP_257174.2| peptide deformylase [Pseudomonas fluorescens Pf-5]
          Length = 168

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+    +D+   YQEGCLS+P +  +V R   + ++ +D + Q   + A+G
Sbjct: 67  RSEPRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQPYELIAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162


>gi|15837528|ref|NP_298216.1| peptide deformylase [Xylella fastidiosa 9a5c]
 gi|28199634|ref|NP_779948.1| peptide deformylase [Xylella fastidiosa Temecula1]
 gi|182682379|ref|YP_001830539.1| peptide deformylase [Xylella fastidiosa M23]
 gi|54036955|sp|P63918|DEF_XYLFT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040743|sp|P63917|DEF_XYLFA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238691097|sp|B2I8S4|DEF_XYLF2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|9105847|gb|AAF83736.1|AE003931_13 polypeptide deformylase [Xylella fastidiosa 9a5c]
 gi|28057749|gb|AAO29597.1| polypeptide deformylase [Xylella fastidiosa Temecula1]
 gi|182632489|gb|ACB93265.1| peptide deformylase [Xylella fastidiosa M23]
 gi|307578661|gb|ADN62630.1| peptide deformylase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 170

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 111/163 (68%), Gaps = 6/163 (3%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQRFMVI 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +   +  PMVFINP+I+T   D  V+QEGCLS+P   ADV R+  I VR++D +   
Sbjct: 65  DVSEE--KNVPMVFINPEIVTREGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDRHGDE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K
Sbjct: 122 QQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEK 164


>gi|71898893|ref|ZP_00681060.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|71731305|gb|EAO33369.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
          Length = 170

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 111/163 (68%), Gaps = 6/163 (3%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQRFMVI 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +   +  PMVFINP+I+T   D  V+QEGCLS+P   ADV R+  I VR++D +   
Sbjct: 65  DVSEE--KNVPMVFINPEIVTKEGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDRHGDE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K
Sbjct: 122 QQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEK 164


>gi|78049482|ref|YP_365657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325926150|ref|ZP_08187511.1| peptide deformylase [Xanthomonas perforans 91-118]
 gi|78037912|emb|CAJ25657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325543495|gb|EGD14917.1| peptide deformylase [Xanthomonas perforans 91-118]
          Length = 170

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 111/164 (67%), Gaps = 8/164 (4%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64

Query: 62  DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+ D    KN P VF+NP+I++   +  +YQEGCLS+P   ADV R+  ITVRY+D   Q
Sbjct: 65  DISDE---KNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q + ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K
Sbjct: 121 AQELQADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164


>gi|258626114|ref|ZP_05720965.1| peptide deformylase [Vibrio mimicus VM603]
 gi|262166814|ref|ZP_06034551.1| peptide deformylase [Vibrio mimicus VM223]
 gi|262172812|ref|ZP_06040490.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|258581640|gb|EEW06538.1| peptide deformylase [Vibrio mimicus VM603]
 gi|261893888|gb|EEY39874.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|262026530|gb|EEY45198.1| peptide deformylase [Vibrio mimicus VM223]
          Length = 169

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+EK+  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 66  T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYSFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 162


>gi|68347834|gb|AAY95440.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5]
          Length = 213

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 54  FPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 111

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+    +D+   YQEGCLS+P +  +V R   + ++ +D + Q   + A+G
Sbjct: 112 RSEPRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQPYELIAEG 171

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 172 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 207


>gi|262281295|ref|ZP_06059076.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
 gi|262257121|gb|EEY75858.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
          Length = 176

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 111/166 (66%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+VIDL 
Sbjct: 5   PILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDHHIQLIVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  P+VFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q   I
Sbjct: 65  EA--KDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAFEI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|114321775|ref|YP_743458.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310781|sp|Q0A5B9|DEF_ALHEH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114228169|gb|ABI57968.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 178

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/162 (46%), Positives = 111/162 (68%), Gaps = 2/162 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++++PDP LR V+ P+ +++ DI  L D+MLE MY   GIGLAA Q+GV  R+VV+DL +
Sbjct: 6   ILVYPDPRLREVAAPVAQVDDDIRRLADDMLETMYDAQGIGLAATQVGVNQRVVVMDLAE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R+ P+V INP+I+   +  +  QEGCLSIP +  DV+R+  I  R +D   +     
Sbjct: 66  EGARQ-PLVLINPEILD-REGAATGQEGCLSIPGFYEDVERAERIRFRALDREGRPWEQE 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           A+GL+A C+QHE+DHL+G LF+D+LS LKR  I +K+ KLV+
Sbjct: 124 AEGLMAVCVQHEIDHLDGKLFVDYLSELKRKRIRRKLEKLVR 165


>gi|120552986|ref|YP_957337.1| peptide deformylase [Marinobacter aquaeolei VT8]
 gi|120322835|gb|ABM17150.1| peptide deformylase [Marinobacter aquaeolei VT8]
          Length = 167

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/162 (45%), Positives = 108/162 (66%), Gaps = 2/162 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +PDP LR +++P+E++  DI  LID+M E MY   GIGLAA Q+ V  +++V+DL
Sbjct: 3   REILEYPDPRLRTIAKPVEEVTDDIRTLIDDMFETMYDARGIGLAATQVDVHKQIIVMDL 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +   +  P VFINPK+     +    QEGCLS+P +  DVKR     +   D + +  +
Sbjct: 63  SED--KTEPRVFINPKVEVLDGELEAMQEGCLSVPGFYEDVKRIEHCRITAKDRDGKEFV 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + A+GLLA C+QHE+DHLNG LF+D+LS+LKR+ I KK+ KL
Sbjct: 121 LEAEGLLAVCIQHEMDHLNGKLFVDYLSQLKRNRIRKKLEKL 162


>gi|261213229|ref|ZP_05927511.1| peptide deformylase [Vibrio sp. RC341]
 gi|260837503|gb|EEX64206.1| peptide deformylase [Vibrio sp. RC341]
          Length = 190

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+EK+  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 27  VLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 86

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 87  T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALDRNGQEYRFE 143

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 144 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 183


>gi|262402048|ref|ZP_06078612.1| peptide deformylase [Vibrio sp. RC586]
 gi|262351694|gb|EEZ00826.1| peptide deformylase [Vibrio sp. RC586]
          Length = 169

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/160 (49%), Positives = 110/160 (68%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+EK+  +I  +ID+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+  D N Q     
Sbjct: 66  T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKAQDRNGQEYSFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKV 162


>gi|21244525|ref|NP_644107.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
 gi|39931168|sp|Q8PG20|DEF2_XANAC RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21110197|gb|AAM38643.1| polypeptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 170

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 111/164 (67%), Gaps = 8/164 (4%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  + P+   E  +     L+D+M   MY   GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKRFMVI 64

Query: 62  DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+ D    KN P VF+NP+I++   +  +YQEGCLS+P   ADV R+  ITVRY+D   Q
Sbjct: 65  DISD---EKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K
Sbjct: 121 PQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164


>gi|330500987|ref|YP_004377856.1| peptide deformylase [Pseudomonas mendocina NK-01]
 gi|328915273|gb|AEB56104.1| peptide deformylase [Pseudomonas mendocina NK-01]
          Length = 168

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 105/156 (67%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + Q   + A+G
Sbjct: 67  KSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPYELIAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162


>gi|77456245|ref|YP_345750.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
 gi|77380248|gb|ABA71761.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
          Length = 168

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 105/156 (67%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + +   + A+G
Sbjct: 67  RTEPRVFINPEFESLTDEMEQYQEGCLSVPGFYENVDRPQKVKIKALDRDGKPYELIAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162


>gi|257485584|ref|ZP_05639625.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289627009|ref|ZP_06459963.1| peptide deformylase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647926|ref|ZP_06479269.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867901|gb|EGH02610.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330890232|gb|EGH22893.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
 gi|330985723|gb|EGH83826.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331011873|gb|EGH91929.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 168

 Score =  157 bits (397), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +   + A+G
Sbjct: 67  RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162


>gi|169123281|gb|ACA47112.1| peptide deformylase [Pseudomonas putida]
          Length = 168

 Score =  157 bits (397), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 105/157 (66%), Gaps = 2/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP++   +DD   YQEGCLS+P +  +V R   + V+ +D + +   + A+ 
Sbjct: 67  RTEPRVFINPELEPLTDDMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGKPYELIAED 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKL 163


>gi|297581920|ref|ZP_06943840.1| peptide deformylase [Vibrio cholerae RC385]
 gi|297533787|gb|EFH72628.1| peptide deformylase [Vibrio cholerae RC385]
          Length = 190

 Score =  157 bits (397), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++DNMLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 27  VLTFPDDRLRTVAKPVEQVTPEIQQIVDNMLETMYAEEGIGLAATQVDIHQRIVVIDISE 86

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 87  T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 143

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 144 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 183


>gi|114800420|ref|YP_759242.1| peptide deformylase [Hyphomonas neptunium ATCC 15444]
 gi|123028362|sp|Q0C4V1|DEF_HYPNA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114740594|gb|ABI78719.1| peptide deformylase [Hyphomonas neptunium ATCC 15444]
          Length = 176

 Score =  157 bits (397), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 108/165 (65%), Gaps = 1/165 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++  PDP L++VS+P+E  +  DI  L+D+MLE MY   GIGLAA+QIGV  R++
Sbjct: 1   MAIREILTVPDPRLKQVSKPVEGGVTDDIRALMDDMLETMYDAPGIGLAAIQIGVPLRVI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+DL        P  F+NP+I+   ++   Y+EGCLS+PD    V+RSA   +RY+D + 
Sbjct: 61  VMDLAREGEEPAPRYFVNPEILETIEEKKPYEEGCLSVPDIFDQVERSARCRIRYLDYDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +    +A+ L A C+QHE+DHL G LFID+LSRLKRD    K+ K
Sbjct: 121 KQVDEWAEDLYAVCIQHEMDHLEGTLFIDYLSRLKRDRAIDKVKK 165


>gi|255319595|ref|ZP_05360807.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262380781|ref|ZP_06073934.1| peptide deformylase [Acinetobacter radioresistens SH164]
 gi|255303350|gb|EET82555.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262297729|gb|EEY85645.1| peptide deformylase [Acinetobacter radioresistens SH164]
          Length = 176

 Score =  157 bits (396), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 107/165 (64%), Gaps = 2/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR +++P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSFPDPRLRTLAKPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  PMVFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++       I
Sbjct: 65  EE--KNQPMVFINPKITPLTEDTQPYEEGCLSVPQIYDKVERPSRVKIEALNLEGNAFEI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ KLV+ R
Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRSR 167


>gi|330876380|gb|EGH10529.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965122|gb|EGH65382.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 168

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +   + A+G
Sbjct: 67  RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162


>gi|146305096|ref|YP_001185561.1| peptide deformylase [Pseudomonas mendocina ymp]
 gi|166198520|sp|A4XNB3|DEF_PSEMY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145573297|gb|ABP82829.1| peptide deformylase [Pseudomonas mendocina ymp]
          Length = 168

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 105/156 (67%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + Q   + A+G
Sbjct: 67  KSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPFELIAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162


>gi|66043290|ref|YP_233131.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
 gi|63253997|gb|AAY35093.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae
           B728a]
 gi|330957385|gb|EGH57645.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
           ES4326]
 gi|330970343|gb|EGH70409.1| peptide deformylase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 168

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +   + A+G
Sbjct: 67  RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162


>gi|197121178|ref|YP_002133129.1| peptide deformylase [Anaeromyxobacter sp. K]
 gi|196171027|gb|ACG72000.1| peptide deformylase [Anaeromyxobacter sp. K]
          Length = 185

 Score =  157 bits (396), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 109/166 (65%), Gaps = 1/166 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +VI+PDPIL+ V++P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VID 
Sbjct: 3   REIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVIDT 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                 +  +  +NP+I+    + + Y EGCLSIP    DV R A + VR +D   +   
Sbjct: 63  SPRQEGQTLIHLVNPEIVRGEGELT-YTEGCLSIPGEAEDVDRFARVWVRALDRQGKPFE 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + A+GLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 122 LEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|237801646|ref|ZP_04590107.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024505|gb|EGI04561.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 168

 Score =  156 bits (395), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +   + A+G
Sbjct: 67  RSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYEMVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162


>gi|169632177|ref|YP_001705913.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii SDF]
 gi|238688145|sp|B0VNL8|DEF_ACIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169150969|emb|CAO99588.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii]
          Length = 176

 Score =  156 bits (395), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 110/166 (66%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  PMVFINPK+   +++   Y+EGCLS+P     V R + + +  ++   Q   I
Sbjct: 65  ES--KDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAFEI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ADGLLA C+QHE+DHLNG LF+D+LS LKR  + +K+ K+V+ R+
Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRVREKVEKIVRQRE 168


>gi|289664808|ref|ZP_06486389.1| peptide deformylase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667878|ref|ZP_06488953.1| peptide deformylase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 170

 Score =  156 bits (395), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 8/164 (4%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAVPVDAAELTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64

Query: 62  DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+ D    KN P VF+NP+I++   +  +YQEGCLS+P   ADV R+  ITVRY+D   Q
Sbjct: 65  DVSDE---KNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q ++ DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K
Sbjct: 121 PQELHTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164


>gi|296115067|ref|ZP_06833709.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978404|gb|EFG85140.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 180

 Score =  156 bits (395), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ P  ILR+ +R +  +  + +   I  M   MY   GIGLAA Q+G+  R  ++D+
Sbjct: 14  PILVAPQAILRQKTRLVRPEDTAQLREAIPRMFAAMYKAPGIGLAAPQVGLGLRFALVDV 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    +NPMV INP II  ++  SV +EGCLS+P+  A+V R   + VRY D   +   
Sbjct: 74  ADKDEARNPMVLINPDIIAETETMSVREEGCLSLPNQYAEVARPESVRVRYQDLEGKRHE 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I  DGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K  +LR
Sbjct: 134 IEVDGLLATCIQHEIDHLEGILFVDHLSALKRNMIMRRLAKEQRLR 179


>gi|327482957|gb|AEA77364.1| Peptide deformylase [Vibrio cholerae LMA3894-4]
          Length = 169

 Score =  156 bits (395), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +  R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 66  N--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 162


>gi|50083493|ref|YP_045003.1| peptide deformylase [Acinetobacter sp. ADP1]
 gi|49529469|emb|CAG67181.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter sp. ADP1]
          Length = 174

 Score =  156 bits (395), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 110/166 (66%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPD  LR +++P+EK+  +I  L  +MLE MY   GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSFPDARLRTIAKPVEKVTDEIRQLAADMLETMYEAPGIGLAATQVDRHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  PMVFINPKI   +++   Y+EGCLS+P     V R++ + +  ++ N +   I
Sbjct: 65  EE--KDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVNRTSRVKIEAINLNDEAFEI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|254293235|ref|YP_003059258.1| peptide deformylase [Hirschia baltica ATCC 49814]
 gi|254041766|gb|ACT58561.1| peptide deformylase [Hirschia baltica ATCC 49814]
          Length = 181

 Score =  156 bits (394), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 105/155 (67%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  P+P+L+ VS+P++ +  +I  L+D+MLE MY   GIGLAA+QIG   R++V
Sbjct: 1   MTIRPILTVPNPLLKEVSKPVDAVTDEIRALMDDMLETMYDAPGIGLAAIQIGEPVRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D     NP  F+NP+I+   +    Y EGCLS+P+    ++R   + ++Y++   +
Sbjct: 61  MDIADKDEEPNPQYFVNPEILEKVEATVPYDEGCLSVPEIYETIERPERVQIKYLNYKGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             I +A+GL ATC+QHE+DHL G LFID+LSRLKR
Sbjct: 121 EVIEWAEGLYATCIQHEMDHLEGKLFIDYLSRLKR 155


>gi|319785850|ref|YP_004145325.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464362|gb|ADV26094.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
          Length = 170

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 105/163 (64%), Gaps = 6/163 (3%)

Query: 5   PLVIFPDPILRRVS---RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  +    P +        L+D+M E MY   GIGLAA Q+    R +VI
Sbjct: 5   PILEFPDPRLRTKAAQVEPAQVTTPGFQRLVDDMFETMYEAPGIGLAATQVDQHLRFMVI 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  +   +  PMVFINP+I+  S    VYQEGCLS+P   ADV R+  I VR++D   + 
Sbjct: 65  DTSED--KSAPMVFINPEIVQ-SQGGRVYQEGCLSVPGIYADVTRADTIVVRFLDREGRQ 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q + ADGLLATC+QHE+DHL G LF+D+LS LKR+M+ KK++K
Sbjct: 122 QELAADGLLATCIQHEMDHLEGKLFVDYLSPLKREMVRKKLAK 164


>gi|225677067|ref|ZP_03788072.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590889|gb|EEH12111.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 179

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 105/169 (62%), Gaps = 8/169 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V+D+Q
Sbjct: 5   PIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFVVDVQ 64

Query: 65  DHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                  P  +        INP+I   SD+    +EGCLSIP+   ++KR  ++TV+Y D
Sbjct: 65  LETIENEPAGYESIGKFCMINPEITELSDEQVTLKEGCLSIPEQSYEIKRPKYLTVKYRD 124

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+
Sbjct: 125 LNNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKV 173


>gi|229530168|ref|ZP_04419557.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229332301|gb|EEN97788.1| peptide deformylase [Vibrio cholerae 12129(1)]
          Length = 194

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 31  VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 90

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +  R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 91  N--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 147

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 148 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 187


>gi|15640078|ref|NP_229705.1| peptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587283|ref|ZP_01677056.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121727904|ref|ZP_01680963.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|147673376|ref|YP_001218366.1| peptide deformylase [Vibrio cholerae O395]
 gi|153212941|ref|ZP_01948535.1| polypeptide deformylase [Vibrio cholerae 1587]
 gi|153802782|ref|ZP_01957368.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|153817595|ref|ZP_01970262.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|153821925|ref|ZP_01974592.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|153826444|ref|ZP_01979111.1| polypeptide deformylase [Vibrio cholerae MZO-2]
 gi|153830125|ref|ZP_01982792.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|227080283|ref|YP_002808834.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|254291093|ref|ZP_04961890.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|255746772|ref|ZP_05420718.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262155853|ref|ZP_06028975.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
 gi|262166896|ref|ZP_06034617.1| peptide deformylase [Vibrio cholerae RC27]
 gi|17432954|sp|Q9KVU3|DEF1_VIBCH RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|9654439|gb|AAF93224.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548529|gb|EAX58585.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121629848|gb|EAX62263.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|124116167|gb|EAY34987.1| polypeptide deformylase [Vibrio cholerae 1587]
 gi|124121695|gb|EAY40438.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|126511863|gb|EAZ74457.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|126520545|gb|EAZ77768.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|146315259|gb|ABQ19798.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|148874389|gb|EDL72524.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|149739830|gb|EDM54025.1| polypeptide deformylase [Vibrio cholerae MZO-2]
 gi|150422938|gb|EDN14888.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|227008171|gb|ACP04383.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|227011951|gb|ACP08161.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|255735529|gb|EET90928.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262024667|gb|EEY43347.1| peptide deformylase [Vibrio cholerae RC27]
 gi|262030305|gb|EEY48947.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
          Length = 169

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 66  T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 162


>gi|332702665|ref|ZP_08422753.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552814|gb|EGJ49858.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
          Length = 182

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 111/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +++ ++ +PD +L R S  I +I  ++  L  +M E MY+ +GIGLAA Q+G   RLVVI
Sbjct: 1   MRRTILKYPDAVLARKSLEIGEITDELRQLAKDMAETMYTNEGIGLAAPQVGECCRLVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R++  V +NPKI T ++   V +EGCLS+  YR+DV RS  +TV   D + + 
Sbjct: 61  DITGPDKREDLRVLVNPKI-TAAEGKVVSEEGCLSVSGYRSDVARSEKVTVEATDLDGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             I ADGLLA CLQHELDHL+G+LFID +SRLKR +  KK+ KL + R
Sbjct: 120 LSIEADGLLAVCLQHELDHLDGVLFIDRISRLKRSLYDKKVKKLQRER 167


>gi|292493779|ref|YP_003529218.1| peptide deformylase [Nitrosococcus halophilus Nc4]
 gi|291582374|gb|ADE16831.1| peptide deformylase [Nitrosococcus halophilus Nc4]
          Length = 167

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/160 (49%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAA+Q+ V  R+VVID+ +   
Sbjct: 9   YPDPRLRRKAQPVATVDESIKKLADDMLETMYQAPGIGLAAIQVNVPKRIVVIDISED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           + +P+V INP+I+      +   EGCLS+P+    V R+A ITVRY+D   Q Q + A  
Sbjct: 67  KSSPLVLINPEIVARRGK-AESDEGCLSVPEIFEPVTRAAEITVRYLDREGQEQELEAQE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLATC+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 126 LLATCIQHELDHLEGKLFIDYLSTLKRQRIRKKVEKRQRL 165


>gi|220915878|ref|YP_002491182.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953732|gb|ACL64116.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 185

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 109/166 (65%), Gaps = 1/166 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +VI+PDPIL+ V+ P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VID 
Sbjct: 3   REIVIWPDPILKEVAHPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVIDT 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                 +  +  +NP+I+    + + Y EGCLSIP    DV R A + VR +D + +   
Sbjct: 63  SPRQEGQTLIHLVNPEIVRGEGELT-YTEGCLSIPGEAEDVDRFARVWVRALDYHGKPFE 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + A+GLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 122 LEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|255261213|ref|ZP_05340555.1| peptide deformylase [Thalassiobium sp. R2A62]
 gi|255103548|gb|EET46222.1| peptide deformylase [Thalassiobium sp. R2A62]
          Length = 173

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/163 (46%), Positives = 106/163 (65%), Gaps = 1/163 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID- 62
           +P++I PDP L++ +  + + +  +  L D+ML+ MY   GIGLAA QIGV+ R+ V+D 
Sbjct: 4   RPILIHPDPRLKKRADEVTEFDDALCVLGDDMLDTMYDAPGIGLAAPQIGVMSRVFVMDC 63

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +++      PMV +NP+I   SD+ + Y EGCLSIP+  A+V R A + V + D      
Sbjct: 64  VKEEGEEPKPMVLVNPEITWTSDEMNTYDEGCLSIPEQYAEVDRPAEVKVTWQDVEGTQY 123

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
               DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL
Sbjct: 124 EAQFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKL 166


>gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213968425|ref|ZP_03396568.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
 gi|301384287|ref|ZP_07232705.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
 gi|302060151|ref|ZP_07251692.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
 gi|302130424|ref|ZP_07256414.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|32363153|sp|Q88B43|DEF1_PSESM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213926713|gb|EEB60265.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
 gi|331017687|gb|EGH97743.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 168

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDSRLRTLAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +   + A+G
Sbjct: 67  RSAPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162


>gi|90019670|ref|YP_525497.1| peptide deformylase [Saccharophagus degradans 2-40]
 gi|123090994|sp|Q21PV5|DEF_SACD2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|89949270|gb|ABD79285.1| peptide deformylase [Saccharophagus degradans 2-40]
          Length = 172

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 104/160 (65%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR +++P+ K++  I  LID+M E MY   GIGLAA Q+ V  +++VIDL 
Sbjct: 5   PILEFPDPRLRTIAKPVAKVDQRIRTLIDDMFETMYDAPGIGLAATQVNVHEQVLVIDLG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +    K PMVFINP I     +   Y+EGCLS+P +   V R   I V  +D + +  +I
Sbjct: 65  EET--KEPMVFINPSIEILDQEHYEYEEGCLSVPGFYEQVSRPKHIRVTALDRDGKEFVI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +GLLA C+QHE+DHLNG LF+D++S +KR  I KK+ K
Sbjct: 123 EPEGLLAVCVQHEMDHLNGKLFVDYVSNIKRQRIRKKLEK 162


>gi|84622203|ref|YP_449575.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161899019|ref|YP_199224.2| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84366143|dbj|BAE67301.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 170

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 113/168 (67%), Gaps = 8/168 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           MV  P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +VID+ D    KN P VF+NP+I++   +  + QEGCLS+P   ADV R+  ITVRY+D
Sbjct: 61  FMVIDVSDE---KNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLD 116

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K
Sbjct: 117 RQGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164


>gi|169797633|ref|YP_001715426.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii AYE]
 gi|184156510|ref|YP_001844849.1| peptide deformylase [Acinetobacter baumannii ACICU]
 gi|213155573|ref|YP_002317618.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|215484987|ref|YP_002327228.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|239503032|ref|ZP_04662342.1| peptide deformylase [Acinetobacter baumannii AB900]
 gi|260557576|ref|ZP_05829790.1| peptide deformylase [Acinetobacter baumannii ATCC 19606]
 gi|301346868|ref|ZP_07227609.1| peptide deformylase [Acinetobacter baumannii AB056]
 gi|301512296|ref|ZP_07237533.1| peptide deformylase [Acinetobacter baumannii AB058]
 gi|301594510|ref|ZP_07239518.1| peptide deformylase [Acinetobacter baumannii AB059]
 gi|332852665|ref|ZP_08434319.1| peptide deformylase [Acinetobacter baumannii 6013150]
 gi|332869381|ref|ZP_08438759.1| peptide deformylase [Acinetobacter baumannii 6013113]
 gi|332875644|ref|ZP_08443456.1| peptide deformylase [Acinetobacter baumannii 6014059]
 gi|169150560|emb|CAM88469.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii AYE]
 gi|183208104|gb|ACC55502.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
 gi|193076056|gb|ABO10651.2| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
           ATCC 17978]
 gi|213054733|gb|ACJ39635.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|213986809|gb|ACJ57108.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|260408749|gb|EEX02053.1| peptide deformylase [Acinetobacter baumannii ATCC 19606]
 gi|322506378|gb|ADX01832.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2]
 gi|323516246|gb|ADX90627.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332729133|gb|EGJ60480.1| peptide deformylase [Acinetobacter baumannii 6013150]
 gi|332732799|gb|EGJ64015.1| peptide deformylase [Acinetobacter baumannii 6013113]
 gi|332736217|gb|EGJ67232.1| peptide deformylase [Acinetobacter baumannii 6014059]
          Length = 176

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 109/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  PMVFINPK+   +++   Y+EGCLS+P     V R + + +  ++   Q   I
Sbjct: 65  ES--KDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAFEI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 123 EADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKIVRQRE 168


>gi|58424802|gb|AAW73839.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 183

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 113/168 (67%), Gaps = 8/168 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           MV  P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 14  MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 73

Query: 58  LVVIDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +VID+ D    KN P VF+NP+I++   +  + QEGCLS+P   ADV R+  ITVRY+D
Sbjct: 74  FMVIDVSDE---KNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLD 129

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K
Sbjct: 130 RQGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 177


>gi|146280418|ref|YP_001170571.1| peptide deformylase [Pseudomonas stutzeri A1501]
 gi|158514117|sp|A4VFH8|DEF_PSEU5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145568623|gb|ABP77729.1| polypeptide deformylase [Pseudomonas stutzeri A1501]
 gi|327478634|gb|AEA81944.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
          Length = 168

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 104/157 (66%), Gaps = 2/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVDVVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+    +D    YQEGCLS+P +  +V R   + ++ +D + +   + A+G
Sbjct: 67  RSEPRVFINPEFEPLTDQMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPYELIAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K+
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEKI 163


>gi|254851611|ref|ZP_05240961.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|254847316|gb|EET25730.1| peptide deformylase 2 [Vibrio cholerae MO10]
          Length = 190

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 27  VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 86

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 87  T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 143

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 144 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 183


>gi|229508331|ref|ZP_04397835.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229508830|ref|ZP_04398321.1| peptide deformylase [Vibrio cholerae B33]
 gi|229515915|ref|ZP_04405372.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229517101|ref|ZP_04406547.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229520217|ref|ZP_04409644.1| peptide deformylase [Vibrio cholerae TM 11079-80]
 gi|229606606|ref|YP_002877254.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|229342811|gb|EEO07802.1| peptide deformylase [Vibrio cholerae TM 11079-80]
 gi|229346164|gb|EEO11136.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229347015|gb|EEO11977.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229354105|gb|EEO19037.1| peptide deformylase [Vibrio cholerae B33]
 gi|229354604|gb|EEO19526.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229369261|gb|ACQ59684.1| peptide deformylase [Vibrio cholerae MJ-1236]
          Length = 194

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 31  VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 90

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 91  T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 147

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 148 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 187


>gi|197286654|ref|YP_002152526.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227355155|ref|ZP_03839566.1| peptide deformylase [Proteus mirabilis ATCC 29906]
 gi|194684141|emb|CAR45570.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227164942|gb|EEI49789.1| peptide deformylase [Proteus mirabilis ATCC 29906]
          Length = 172

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 108/163 (66%), Gaps = 2/163 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           L+ FPD  LR+V+ P+EK++ +I  LID+M+E MY+  GIGLAA Q+ V  R+VVID+ +
Sbjct: 6   LLHFPDERLRKVATPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVVIDVSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +  R  P+  INP+II+  D+     +GCLSIPD  A  +R  ++ V+ +D N     + 
Sbjct: 66  N--RDQPIALINPEIISTEDEIMDMMDGCLSIPDSFAPTQRFRYLKVKALDRNGDEIELE 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A  L A C+QHELDHLNG LFIDHLS LKR  I KK  KL +L
Sbjct: 124 AADLFAGCIQHELDHLNGKLFIDHLSPLKRQRIEKKQKKLSKL 166


>gi|330901114|gb|EGH32533.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330937252|gb|EGH41267.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330976422|gb|EGH76478.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 168

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/156 (47%), Positives = 103/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  PMV INP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +   + A+G
Sbjct: 67  RSEPMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162


>gi|262191293|ref|ZP_06049487.1| peptide deformylase [Vibrio cholerae CT 5369-93]
 gi|262032831|gb|EEY51375.1| peptide deformylase [Vibrio cholerae CT 5369-93]
          Length = 190

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 27  VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRVVVIDISE 86

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 87  T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 143

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 144 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 183


>gi|298484627|ref|ZP_07002731.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160851|gb|EFI01868.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 168

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/156 (47%), Positives = 103/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +   + A+G
Sbjct: 67  RSEPRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162


>gi|89092291|ref|ZP_01165245.1| peptide deformylase [Oceanospirillum sp. MED92]
 gi|89083379|gb|EAR62597.1| peptide deformylase [Oceanospirillum sp. MED92]
          Length = 171

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 107/165 (64%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP LR ++ P+ ++  +I   ID+M E MY+  GIGLAA Q+ +  R+V 
Sbjct: 1   MAKLTILEYPDPRLRTIAEPVSEVTDEIRAQIDDMFETMYAAPGIGLAATQVNIHKRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +  P+V INP+     ++   YQEGCLS+P +  DVKR   I ++ +D N +
Sbjct: 61  MDISDD--QNEPLVLINPEFEVIDEELHKYQEGCLSVPGFYEDVKRPQKIKLKALDYNGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              + A+GLLA C+QHELDHLNG LF+D+LS LKR+ I  K+ K+
Sbjct: 119 AYELEAEGLLAVCIQHELDHLNGKLFVDYLSMLKRNRIKGKLEKI 163


>gi|254523595|ref|ZP_05135650.1| peptide deformylase [Stenotrophomonas sp. SKA14]
 gi|219721186|gb|EED39711.1| peptide deformylase [Stenotrophomonas sp. SKA14]
          Length = 170

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 106/163 (65%), Gaps = 6/163 (3%)

Query: 5   PLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  +  IE           LIDNM   MY   GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKRFMVI 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +   +  P VFINP+I+   D   VYQEGCLS+P   ADV R+  ITV+Y+D N Q 
Sbjct: 65  DVSEE--KNEPHVFINPEIVA-KDGGRVYQEGCLSVPGIFADVTRADTITVKYLDRNGQE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K
Sbjct: 122 QQLEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAK 164


>gi|262374668|ref|ZP_06067941.1| peptide deformylase [Acinetobacter junii SH205]
 gi|262310458|gb|EEY91549.1| peptide deformylase [Acinetobacter junii SH205]
          Length = 176

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 109/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR +++P+E++  DI  L  +MLE MY   GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSFPDPRLRTIAKPVEEVTDDIRQLAADMLETMYEAPGIGLAATQVDHHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  PMVFINPK+   + +   Y+EGCLS+P     V+R + + +  ++ + Q   +
Sbjct: 65  EE--KNQPMVFINPKVTPLTQETQPYEEGCLSVPQIYDKVERPSRVKIEAINLDGQAFEL 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 123 EADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|58584374|ref|YP_197947.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|75508016|sp|Q5GTG9|DEF_WOLTR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|58418690|gb|AAW70705.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 179

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 109/173 (63%), Gaps = 8/173 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +V+ PD  L   +  +  IN  I  L+++M E MY+ +G+GLAAVQIGVL R+ V
Sbjct: 1   MPKLSIVVAPDERLTTRASEVTGINDKIKELVNDMFETMYNAEGLGLAAVQIGVLKRIFV 60

Query: 61  IDLQDHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q    +  P+ +        INP+I   SD+  + +EGCLSIP+   +++R  ++TV
Sbjct: 61  MDIQLEDIKGEPVGYESTGKFCMINPEITELSDEQVILKEGCLSIPEQSHEIRRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K 
Sbjct: 121 KYKDLNNKEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAEKF 173


>gi|262376937|ref|ZP_06070164.1| peptide deformylase [Acinetobacter lwoffii SH145]
 gi|262308282|gb|EEY89418.1| peptide deformylase [Acinetobacter lwoffii SH145]
          Length = 176

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 109/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR +++P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSFPDPRLRTIAQPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           ++  +  PMVFINPKI   +++   Y+EGCLS+P     V R + + +  ++   Q   +
Sbjct: 65  EN--KDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAFEL 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ KLV+ R+
Sbjct: 123 DADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRQRN 168


>gi|92114984|ref|YP_574912.1| peptide deformylase [Chromohalobacter salexigens DSM 3043]
 gi|123387341|sp|Q1QTJ5|DEF_CHRSD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91798074|gb|ABE60213.1| peptide deformylase [Chromohalobacter salexigens DSM 3043]
          Length = 170

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 106/164 (64%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPD  LR  + P+E ++ +   L+D+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLTILEFPDERLRTKAAPVETVDDETRKLVDDMLETMYDAQGIGLAATQVDVHRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R  P V INP+     D+    QEGCLSIP+Y A+V R+  ++++ +D +  
Sbjct: 61  MDVSDD--RSQPRVLINPEYTPLGDEREPMQEGCLSIPEYYAEVPRALRVSLKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + ADGLLA C+QHE DHL G+LF+D+LS LKRD + KKM K
Sbjct: 119 PYELEADGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRVLKKMQK 162


>gi|126726109|ref|ZP_01741951.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
 gi|126705313|gb|EBA04404.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
          Length = 159

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 107/154 (69%), Gaps = 3/154 (1%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHAHRKNP 72
           +++++ PI  ++ ++  L D+ML  MY   GIGLAA QIGVL RL+V+D +++      P
Sbjct: 1   MKKIATPIVDLSDELRVLADDMLATMYEAPGIGLAAPQIGVLERLIVLDCVKEEGADPRP 60

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQHQIIYADGLLA 131
           +   NP+I   SD+ SVY EGCLSIP+  A+V R A ++VR+M  + A+H   + DGL A
Sbjct: 61  VAMFNPEITASSDELSVYDEGCLSIPEIYAEVTRPAEVSVRWMGLDGAEHNETF-DGLWA 119

Query: 132 TCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           TC+QHE+DHLNG LFID+L  LKR MIT+KM KL
Sbjct: 120 TCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKL 153


>gi|146291135|ref|YP_001181559.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|145562825|gb|ABP73760.1| peptide deformylase [Shewanella putrefaciens CN-32]
          Length = 170

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 105/160 (65%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V+DLQD   
Sbjct: 9   FPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+II+ S DF   +EGCLS+P   A V R+ F+TV+ +D N    I+ AD 
Sbjct: 69  R--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGCEFIVEADE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|166713738|ref|ZP_02244945.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 170

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 8/164 (4%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAVPVDAAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64

Query: 62  DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+ D    KN P VF+NP+I++   +  + QEGCLS+P   ADV R+  ITVRY+D   Q
Sbjct: 65  DVSDE---KNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLDRQGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K
Sbjct: 121 AQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164


>gi|88705378|ref|ZP_01103089.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
 gi|88700468|gb|EAQ97576.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
          Length = 168

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 104/161 (64%), Gaps = 2/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR V++P+E ++ D+  LIDNM+E MY   GIGLAA Q+ V  RL+V+D+ ++  
Sbjct: 9   FPDPRLRTVAKPVESVDDDLRALIDNMIETMYEASGIGLAATQVNVHKRLLVLDISEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  PMVFINP++    D    Y EGCLS+P +  +V R   + V  +  + +      DG
Sbjct: 67  RDQPMVFINPEVTVLDDTLGSYDEGCLSVPGFYEEVNRPRKVRVEALGRDGESFSQELDG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           L A CLQHE+DHL+G LF+D++S LKR+ I  K+ K  +LR
Sbjct: 127 LAAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167


>gi|332304409|ref|YP_004432260.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171738|gb|AEE20992.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 169

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V+ P+EKI+  I  LI +MLE M   +GIGLAA QI V  R+VVID+ +   
Sbjct: 9   FPDERLRTVAAPVEKIDGTIKTLISDMLETMKDENGIGLAATQINVHKRVVVIDVSEK-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           + NP VFINP+I T  D  ++ +EGCLS+P+  A V+R+  ITV  +D N     + ADG
Sbjct: 67  QDNPQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAETITVNALDENGDAFTLDADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHELDHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 126 LLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165


>gi|190576007|ref|YP_001973852.1| peptide deformylase [Stenotrophomonas maltophilia K279a]
 gi|229487565|sp|B2FIR4|DEF_STRMK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190013929|emb|CAQ47569.1| putative peptide deformylase [Stenotrophomonas maltophilia K279a]
          Length = 170

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 106/163 (65%), Gaps = 6/163 (3%)

Query: 5   PLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  +  IE           LIDNM   MY   GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKRFMVI 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +   +  P VFINP+I+   D   VYQEGCLS+P   ADV R+  ITV+Y+D N Q 
Sbjct: 65  DVSEE--KNEPHVFINPEIVA-KDGGRVYQEGCLSVPGIFADVTRADTITVKYLDRNGQE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K
Sbjct: 122 QQMEAGDVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAK 164


>gi|325924333|ref|ZP_08185877.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
 gi|325545198|gb|EGD16508.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
          Length = 170

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 8/164 (4%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAVPVDAAEVTSPAFQRLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64

Query: 62  DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+ D    KN P VFINP+I++   +  +YQEGCLS+P   ADV R+  ITVRY+D + Q
Sbjct: 65  DVSDE---KNLPQVFINPQIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYVDRHGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q +  +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K
Sbjct: 121 AQELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164


>gi|226952176|ref|ZP_03822640.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
           deformylase) [Acinetobacter sp. ATCC 27244]
 gi|294648885|ref|ZP_06726341.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837014|gb|EEH69397.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
           deformylase) [Acinetobacter sp. ATCC 27244]
 gi|292825276|gb|EFF84023.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
          Length = 176

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 109/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR +++P+E++  +I  L  +MLE MY   GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYEAPGIGLAATQVDHHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  PMVFINPK+   +++   Y+EGCLS+P     V+R + + +  ++   Q   +
Sbjct: 65  EE--KNQPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAFEL 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 123 EADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|260774554|ref|ZP_05883467.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
 gi|260610460|gb|EEX35666.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
          Length = 170

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 109/160 (68%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+EK+  +I  ++D+MLE MY  +GIGLAA Q+ +  R+VVID+ D
Sbjct: 6   VLTFPDDRLRTVAKPVEKVTPEIQKIVDDMLETMYDEEGIGLAATQVDIHQRIVVIDVSD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ ++ + +     
Sbjct: 66  S--RDQPMVLINPQIIEKRGEDGI-EEGCLSVPGSRALVPRAAEVTVKALNRDGEEYTFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKI 162


>gi|42520067|ref|NP_965982.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81700107|sp|Q73IJ6|DEF_WOLPM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|42409804|gb|AAS13916.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 179

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 106/169 (62%), Gaps = 8/169 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V+D+Q
Sbjct: 5   PIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFVMDIQ 64

Query: 65  DHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                  P  +        INP+I   SD+  + +EGCLSIP+   ++KR  ++TV+Y D
Sbjct: 65  LETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTVKYKD 124

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+
Sbjct: 125 LDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKV 173


>gi|298501230|ref|ZP_07011029.1| peptide deformylase [Vibrio cholerae MAK 757]
 gi|297540102|gb|EFH76164.1| peptide deformylase [Vibrio cholerae MAK 757]
          Length = 206

 Score =  154 bits (389), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 43  VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 102

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 103 T--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 159

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 160 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 199


>gi|104779338|ref|YP_605836.1| peptide deformylase [Pseudomonas entomophila L48]
 gi|95108325|emb|CAK13019.1| peptide deformylase 1 [Pseudomonas entomophila L48]
          Length = 168

 Score =  154 bits (389), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +   + A+G
Sbjct: 67  RSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPYELEAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K
Sbjct: 127 LLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEK 162


>gi|254453655|ref|ZP_05067092.1| peptide deformylase [Octadecabacter antarcticus 238]
 gi|198268061|gb|EDY92331.1| peptide deformylase [Octadecabacter antarcticus 238]
          Length = 159

 Score =  154 bits (389), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/150 (48%), Positives = 103/150 (68%), Gaps = 1/150 (0%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHAHRKNPMVF 75
           ++ P+  ++  +  L D+MLE MY   GIGLAA Q+G++ R++V+D ++D      PMV 
Sbjct: 1   MADPVATVDKTLHALADDMLETMYDAPGIGLAAPQLGIMQRMLVMDCIKDDMETPQPMVL 60

Query: 76  INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           INP++I  S + ++Y EGCLSIP+  A+V+RSA + V +MD N + Q      L ATC+Q
Sbjct: 61  INPRVIAASSETNIYDEGCLSIPEQYAEVERSAVVKVEWMDLNGKTQQDEFSDLWATCVQ 120

Query: 136 HELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           HE+DHLNG LFID+L  LKR MIT+KM KL
Sbjct: 121 HEIDHLNGKLFIDYLKPLKRQMITRKMQKL 150


>gi|120596857|ref|YP_961431.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|120556950|gb|ABM22877.1| peptide deformylase [Shewanella sp. W3-18-1]
          Length = 170

 Score =  154 bits (389), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 105/160 (65%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V+DLQD   
Sbjct: 9   FPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEIE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+II+ S DF   +EGCLS+P   A V R+ F+TV+ +D N    I+ AD 
Sbjct: 69  R--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGCEFIVEADE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|325913842|ref|ZP_08176201.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325539917|gb|EGD11554.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 170

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 108/164 (65%), Gaps = 6/164 (3%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAVPVDATEVTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKRFMVI 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +   +  P VFINP+I+T   +  VYQEGCLS+P   ADV R+  I VRY+D   Q 
Sbjct: 65  DVSEE--KNAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAIAVRYLDRQGQA 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             +  +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K+
Sbjct: 122 HELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKM 165


>gi|167855659|ref|ZP_02478417.1| peptide deformylase [Haemophilus parasuis 29755]
 gi|219871701|ref|YP_002476076.1| peptide deformylase [Haemophilus parasuis SH0165]
 gi|254767590|sp|B8F726|DEF_HAEPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167853231|gb|EDS24487.1| peptide deformylase [Haemophilus parasuis 29755]
 gi|219691905|gb|ACL33128.1| N-formylmethionyl-tRNA deformylase [Haemophilus parasuis SH0165]
          Length = 170

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L +V +P+E +++++   IDNM + MY  +GIGLAA Q+ VL R++ ID++ 
Sbjct: 6   VLIYPDENLAKVCQPVETVDAELNTFIDNMFDTMYEHEGIGLAAPQVNVLKRVITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + N +V INP+I+  S +  + +EGCLSIP  RA V R   +TV+ ++   Q   + 
Sbjct: 65  -GDKTNQIVLINPEILESSGETGI-EEGCLSIPGCRALVPRKEKLTVKALNREGQTFTLE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGLLA C+QHE+DHLNG+LF+DH+S+LKR  I +KM KL
Sbjct: 123 ADGLLAICIQHEIDHLNGVLFVDHISQLKRQRIKEKMLKL 162


>gi|260554281|ref|ZP_05826531.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
 gi|260404590|gb|EEW98110.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
          Length = 176

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 108/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  PMVFINPKI   +++   Y+EGCLS+P     V R + + +  ++   Q   I
Sbjct: 65  ES--KDEPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAFEI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ADGLLA C+QHE+DHL G LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 123 EADGLLAVCIQHEMDHLKGKLFVDYLSPLKRQRAREKVEKIVRQRE 168


>gi|192358847|ref|YP_001984035.1| peptide deformylase [Cellvibrio japonicus Ueda107]
 gi|238692437|sp|B3PGY7|DEF_CELJU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190685012|gb|ACE82690.1| peptide deformylase [Cellvibrio japonicus Ueda107]
          Length = 169

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR V++P+ +++  I  L+D+M E MY   GIGLAA Q+ V  R+VVID+ 
Sbjct: 5   PILEFPDPRLRTVAKPVTQVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  P+VFINP+I    ++ S Y EGCLS+P +   V+R   I V+ +D       +
Sbjct: 65  ED--KSQPLVFINPEIEVLDEELSQYDEGCLSVPGFYETVERPGHIRVKALDRAGNAFEL 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              GLLA C+QHELDHLNG LF+DH+S  KR  I  K+ K
Sbjct: 123 QPQGLLAVCIQHELDHLNGKLFVDHISPFKRSRIRSKLEK 162


>gi|89074760|ref|ZP_01161218.1| peptide deformylase [Photobacterium sp. SKA34]
 gi|89049524|gb|EAR55085.1| peptide deformylase [Photobacterium sp. SKA34]
          Length = 169

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVVIDVSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV +NPKI     +  + +EGCLS+P  R  V R+A ++V  +D N +     
Sbjct: 66  E--RNQPMVLVNPKITEEHGEDGI-EEGCLSVPTARGFVPRAAGVSVTALDRNGKEYSFK 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGLLA C+QHELDHL G LF+D+LS LKR  I +K+ K+
Sbjct: 123 ADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKI 162


>gi|126172288|ref|YP_001048437.1| peptide deformylase [Shewanella baltica OS155]
 gi|152998582|ref|YP_001364263.1| peptide deformylase [Shewanella baltica OS185]
 gi|160873157|ref|YP_001552473.1| peptide deformylase [Shewanella baltica OS195]
 gi|217971247|ref|YP_002355998.1| peptide deformylase [Shewanella baltica OS223]
 gi|125995493|gb|ABN59568.1| peptide deformylase [Shewanella baltica OS155]
 gi|151363200|gb|ABS06200.1| peptide deformylase [Shewanella baltica OS185]
 gi|160858679|gb|ABX47213.1| peptide deformylase [Shewanella baltica OS195]
 gi|217496382|gb|ACK44575.1| peptide deformylase [Shewanella baltica OS223]
 gi|315265382|gb|ADT92235.1| peptide deformylase [Shewanella baltica OS678]
          Length = 170

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFINP+II  S DF   +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVER--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|194367357|ref|YP_002029967.1| peptide deformylase [Stenotrophomonas maltophilia R551-3]
 gi|238693439|sp|B4SKH7|DEF_STRM5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194350161|gb|ACF53284.1| peptide deformylase [Stenotrophomonas maltophilia R551-3]
          Length = 170

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 107/163 (65%), Gaps = 6/163 (3%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P++ FPDP LR  +  I   E        L+DNM + MY   GIGLAA Q+ V  R +VI
Sbjct: 5   PILEFPDPRLRTKAALIDAAEVTTPAFQELVDNMFQTMYDAPGIGLAATQVDVHKRFMVI 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +   +  P VFINP+I+   D   VYQEGCLS+P   ADV R+  ITV+Y+D + Q 
Sbjct: 65  DVSEE--KNEPHVFINPEIVA-KDGGRVYQEGCLSVPGIFADVTRADTITVKYLDRDGQQ 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K
Sbjct: 122 QELEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAK 164


>gi|170719274|ref|YP_001746962.1| peptide deformylase [Pseudomonas putida W619]
 gi|169757277|gb|ACA70593.1| peptide deformylase [Pseudomonas putida W619]
          Length = 168

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQIVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +   + A+G
Sbjct: 67  RSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPFELEAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K
Sbjct: 127 LLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEK 162


>gi|119773185|ref|YP_925925.1| peptide deformylase [Shewanella amazonensis SB2B]
 gi|119765685|gb|ABL98255.1| peptide deformylase [Shewanella amazonensis SB2B]
          Length = 167

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 101/156 (64%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++P+ +    + + ID+M E MY  +GIGLAA Q+    RL+V+DLQD   
Sbjct: 9   FPDERLRTVAKPVTEFTPALQSQIDDMFETMYEENGIGLAATQVDFHQRLIVMDLQDEVE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+I+  S DF   +EGCLS+P   A V R+  ITV+ +D N     + ADG
Sbjct: 69  R--PKVFINPEIVAKSGDF-CNEEGCLSVPGVYAKVDRAELITVKALDRNGNEFTVEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           L A CLQHE+DHL G LF+D+LS LKR  I +K+ K
Sbjct: 126 LFAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEK 161


>gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
          Length = 167

 Score =  153 bits (387), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 8   FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +       A+G
Sbjct: 66  KSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 126 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 161


>gi|15595217|ref|NP_248709.1| peptide deformylase [Pseudomonas aeruginosa PAO1]
 gi|107099012|ref|ZP_01362930.1| hypothetical protein PaerPA_01000019 [Pseudomonas aeruginosa PACS2]
 gi|218888765|ref|YP_002437629.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
 gi|254237739|ref|ZP_04931062.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
 gi|254243131|ref|ZP_04936453.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
 gi|296386491|ref|ZP_06875990.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
 gi|17432949|sp|Q9I7A8|DEF_PSEAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase [Pseudomonas aeruginosa PAO1]
 gi|126169670|gb|EAZ55181.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
 gi|126196509|gb|EAZ60572.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
 gi|218768988|emb|CAW24746.1| polypeptide deformylase [Pseudomonas aeruginosa LESB58]
          Length = 168

 Score =  153 bits (387), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +       A+G
Sbjct: 67  KSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162


>gi|258404153|ref|YP_003196895.1| peptide deformylase [Desulfohalobium retbaense DSM 5692]
 gi|257796380|gb|ACV67317.1| peptide deformylase [Desulfohalobium retbaense DSM 5692]
          Length = 167

 Score =  153 bits (387), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +PDP+L R + P+ +I+ ++  L  +M+E MY+  GIGLAA Q+G  +RL+ +D+  
Sbjct: 5   ICTYPDPVLARRAEPVAEISEEVRQLASDMVETMYANQGIGLAAPQVGKSWRLITVDISG 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             ++   +  +NP+I  + D  +  +EGCLS+P++R+ V+R+A + V   D +     + 
Sbjct: 65  PENQTELVTLVNPEI-QWRDGETETEEGCLSVPEFRSKVQRAAKVRVTGQDLDGNAVDME 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGLLA CLQHE+DHL G + +DH+SRLKR M TKK+SK 
Sbjct: 124 ADGLLAVCLQHEIDHLEGTIILDHVSRLKRSMYTKKVSKW 163


>gi|229524948|ref|ZP_04414353.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
 gi|229338529|gb|EEO03546.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
          Length = 194

 Score =  153 bits (387), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 31  VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 90

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 91  T--RDLPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 147

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 148 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 187


>gi|49081366|gb|AAT50122.1| PA0019 [synthetic construct]
          Length = 169

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +       A+G
Sbjct: 67  KSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162


>gi|262371336|ref|ZP_06064654.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
 gi|262313673|gb|EEY94722.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
          Length = 177

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 106/165 (64%), Gaps = 2/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR ++ P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSFPDPRLRTIAEPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +H  +  P+VFINPK+   +++   Y+EGCLS+P     V+R + + +  ++   Q   I
Sbjct: 65  EH--KDQPLVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAFEI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ KL + R
Sbjct: 123 EADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLTRQR 167


>gi|99034823|ref|ZP_01314739.1| hypothetical protein Wendoof_01000437 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 179

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 105/169 (62%), Gaps = 8/169 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V+D+Q
Sbjct: 5   PIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFVMDIQ 64

Query: 65  DHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                  P  +        INP+I   SD+  + +EGCLSIP+    +KR  ++TV+Y D
Sbjct: 65  LETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHKIKRPKYLTVKYKD 124

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+
Sbjct: 125 LDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKV 173


>gi|254515964|ref|ZP_05128024.1| peptide deformylase [gamma proteobacterium NOR5-3]
 gi|219675686|gb|EED32052.1| peptide deformylase [gamma proteobacterium NOR5-3]
          Length = 168

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 105/161 (65%), Gaps = 2/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR V++P+E ++  +  LIDNMLE MY+  GIGLAA Q+ V  RL+V+D  ++  
Sbjct: 9   FPDPRLRTVAKPVEVVDDALRTLIDNMLETMYAASGIGLAATQVNVHQRLLVLDTSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R +PM+FINP++    D    Y EGCLS+P +  +V R   I V  +  + +   +  DG
Sbjct: 67  RDSPMIFINPQVTILDDTLGSYDEGCLSVPGFYEEVNRPRTIRVEALGRDGKAFSLELDG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           L A CLQHE+DHL+G LF+D++S LKR+ I  K+ K  +LR
Sbjct: 127 LTAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167


>gi|294138834|ref|YP_003554812.1| polypeptide deformylase [Shewanella violacea DSS12]
 gi|293325303|dbj|BAJ00034.1| polypeptide deformylase [Shewanella violacea DSS12]
          Length = 170

 Score =  153 bits (387), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 104/161 (64%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++P+ + N+ +   IDNM E MY   GIGLAA Q+    +L+++DLQD   
Sbjct: 9   FPDERLRTFAKPVTEFNTGLQTQIDNMFETMYEEKGIGLAATQVDYHRQLIIMDLQDEEE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFIN +I+  S  FS  +EGCLS+P   AD++R+  +T++ +D +     + ADG
Sbjct: 69  R--PKVFINLEIVASSGHFS-NEEGCLSVPGIYADIERAEHVTIKALDRDGNEFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA CLQHELDHL G LF+D+LS LKR  I +K+ K  +L 
Sbjct: 126 LLAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARLE 166


>gi|319424441|gb|ADV52515.1| peptide deformylase [Shewanella putrefaciens 200]
          Length = 170

 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 105/160 (65%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V+DLQD   
Sbjct: 9   FPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+II+ S DF   +EGCLS+P   A V R+ F+TV+ +D N    I+ A+ 
Sbjct: 69  R--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGCEFIVEANE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|83642943|ref|YP_431378.1| peptide deformylase [Hahella chejuensis KCTC 2396]
 gi|123767556|sp|Q2SQX1|DEF_HAHCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|83630986|gb|ABC26953.1| peptide deformylase [Hahella chejuensis KCTC 2396]
          Length = 168

 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P++  ++ +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MSKLQILEFPDPRLRTVAKPVQTFDAALGQLIDDMFETMYEAPGIGLAATQVDVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  PMVFINP I     D    QEGCLS+P +   V R   + +R  D N +
Sbjct: 61  IDVSED--KSEPMVFINPDIEVLDGDPEEMQEGCLSVPGFYESVTRIPHVKIRAQDRNGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLLA CLQHE+DHLNG L++D+LS +KR  I KK+ K  ++R
Sbjct: 119 SYEMEARGLLAVCLQHEVDHLNGKLYVDYLSNVKRTRIRKKLEKQHKMR 167


>gi|34809567|pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
 gi|34809568|pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
          Length = 171

 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +       A+G
Sbjct: 67  KSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162


>gi|58697042|ref|ZP_00372504.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|58698050|ref|ZP_00372974.1| peptide deformylase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225629944|ref|YP_002726735.1| polypeptide deformylase [Wolbachia sp. wRi]
 gi|254767611|sp|C0R5A2|DEF_WOLWR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|58535407|gb|EAL59482.1| peptide deformylase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58536692|gb|EAL59978.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|225591925|gb|ACN94944.1| polypeptide deformylase [Wolbachia sp. wRi]
          Length = 179

 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 105/169 (62%), Gaps = 8/169 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V+D+Q
Sbjct: 5   PIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFVVDVQ 64

Query: 65  DHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                  P  +        INP+I   SD+  + +EGCLSIP+   ++KR  ++TV+Y D
Sbjct: 65  LETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTVKYKD 124

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM   K  K+
Sbjct: 125 LDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAITKAQKI 173


>gi|157959861|ref|YP_001499895.1| peptide deformylase [Shewanella pealeana ATCC 700345]
 gi|157844861|gb|ABV85360.1| peptide deformylase [Shewanella pealeana ATCC 700345]
          Length = 199

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 104/161 (64%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++PI + N  +   ID+M E MY   GIGLAA Q+   ++L+V+DLQD   
Sbjct: 38  FPDERLRTVAQPITEFNPALQTQIDDMFETMYEEKGIGLAATQVDYHHQLIVMDLQDEVE 97

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFIN +I   S DF   +EGCLS+P   A V R+ F+T++ +D + +   + ADG
Sbjct: 98  R--PKVFINLEITAKSGDF-CNEEGCLSVPGVYAKVDRAEFVTIKALDRDGKEFTLEADG 154

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           L A CLQHELDHL+G LF+D+LS LKR  I +K+ K  +L 
Sbjct: 155 LFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARLE 195


>gi|167621968|ref|YP_001672262.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
 gi|167351990|gb|ABZ74603.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
          Length = 199

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 105/161 (65%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++PI + N+ +   ID+M E MY   GIGLA+ Q+   ++L+V+DLQD   
Sbjct: 38  FPDERLRTVAKPIAEFNAALQTQIDDMFETMYEEKGIGLASTQVNYHHQLIVMDLQDDVE 97

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFIN +I+  S DF   +EGCLS+P   A V R+ F+T++ +D +     + ADG
Sbjct: 98  R--PKVFINLEIVAKSGDF-CNEEGCLSVPGVYAKVDRAEFVTIKALDRDGNEFSLEADG 154

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           L A CLQHELDHL+G LF+D+LS LKR  I +K+ K  +L 
Sbjct: 155 LFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARLE 195


>gi|152988653|ref|YP_001345416.1| peptide deformylase [Pseudomonas aeruginosa PA7]
 gi|150963811|gb|ABR85836.1| peptide deformylase [Pseudomonas aeruginosa PA7]
          Length = 168

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 103/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D + +     A+G
Sbjct: 67  KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPFEEVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAVCIQHECDHLNGRLFVDYLSTLKRDRIRKKLEK 162


>gi|109896355|ref|YP_659610.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
 gi|109698636|gb|ABG38556.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
          Length = 169

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/160 (49%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V+ P++KI+S I  L+ +MLE M   +GIGLAA QI V  R+VVID+ +   
Sbjct: 9   FPDERLRTVATPVDKIDSSIKTLVSDMLETMKDENGIGLAATQINVHKRVVVIDVSEEQD 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+I T  D  ++ +EGCLS+P+  A V+R+  +TV+ +D N     + ADG
Sbjct: 69  K--PQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAEKVTVKALDENGDAFTLDADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHELDHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 126 LLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165


>gi|326319402|ref|YP_004237074.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376238|gb|ADX48507.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 169

 Score =  152 bits (384), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 109/160 (68%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P++ ++  +  L+D+MLE MY   GIGLAA Q+ V  R++ ID+ 
Sbjct: 5   PILCYPDPRLHKVAQPVQAVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIITIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P+V INP+I+  S+D  V +EGCLS+P     V+RS+ + V+ +D   Q ++I
Sbjct: 65  ED--RDTPLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSSAVRVQALDAQGQSRVI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLA C+QHE+DHL G +F+++LS LKR  I  KM K
Sbjct: 123 EAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLK 162


>gi|304313372|ref|YP_003812970.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1]
 gi|301799105|emb|CBL47348.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1]
          Length = 170

 Score =  152 bits (384), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 105/156 (67%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR  ++P+ + ++ +  L ++MLE MY   GIGLAA QI V  +++V+D+ +   
Sbjct: 9   FPDPRLRTQAKPVTQFDAALRKLTEDMLETMYDAPGIGLAATQINVHQQVIVMDVSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  PMVFINP+I     +   Y+EGCLS+P +  +V R   I V+ ++   +   + ADG
Sbjct: 67  KSQPMVFINPQITVVGGE-KEYEEGCLSVPGFHENVVRPDVIHVKALNAQGEAFELQADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LL+ CLQHE+DHLNG+LF+DH+SRLKRD I +K+ K
Sbjct: 126 LLSVCLQHEMDHLNGVLFVDHISRLKRDRIRRKLEK 161


>gi|116053739|ref|YP_788174.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313111460|ref|ZP_07797261.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
 gi|115588960|gb|ABJ14975.1| polypeptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310883763|gb|EFQ42357.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
          Length = 168

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D +       A+G
Sbjct: 67  KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162


>gi|330993401|ref|ZP_08317336.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1]
 gi|329759431|gb|EGG75940.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1]
          Length = 180

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 106/161 (65%), Gaps = 1/161 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ P  +LR+ +R +   + D +  +I  M   MY   GIGLAA Q+G+  R  ++D+
Sbjct: 14  PILVAPQAVLRQKTRLVRPEDMDGLRTIIPRMFAAMYQAPGIGLAAPQVGLGMRFAIVDV 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    +NP+V INP++I  +D  +  +EGCLS+P+  A+V R   + VRY D   + Q 
Sbjct: 74  SDKDGPRNPIVLINPEVIAETDSMAAREEGCLSLPNQYAEVVRPEAVRVRYQDMEGKVQE 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + AD LLATCLQHE+DHL GILF+DHLS LKR+MI ++++K
Sbjct: 134 LEADDLLATCLQHEIDHLEGILFVDHLSTLKRNMIMRRLAK 174


>gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From Pseudomonas
           Aeruginosa
 gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From Pseudomonas
           Aeruginosa
 gi|47168958|pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide
           Deformylase Inhibitors
 gi|47168959|pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide
           Deformylase Inhibitors
          Length = 180

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 21  FPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-- 78

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D +       A+G
Sbjct: 79  KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEG 138

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 139 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 174


>gi|229587596|ref|YP_002869715.1| peptide deformylase [Pseudomonas fluorescens SBW25]
 gi|229359462|emb|CAY46303.1| peptide deformylase [Pseudomonas fluorescens SBW25]
          Length = 168

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+  ++  +  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   FPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P V+INP+    +D+   YQEGCLS+P++  +V+R   + ++ +D + +   + A+G
Sbjct: 67  RSEPRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPFELIAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 127 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162


>gi|90406714|ref|ZP_01214907.1| peptide deformylase [Psychromonas sp. CNPT3]
 gi|90312167|gb|EAS40259.1| peptide deformylase [Psychromonas sp. CNPT3]
          Length = 170

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 105/157 (66%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR V++ +     +++++  +M++ MY  +G+GLAA Q+ +  R+VVID+ D   
Sbjct: 9   FPDPRLRTVAKKVSNFTPELIDIAQDMIDTMYEENGVGLAATQVDIHQRIVVIDVSDE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R +P+V INP+II+ S +    QEGCLS+PD  AD+ R+ F+TV++ D     Q I AD 
Sbjct: 67  RDDPIVLINPEIISQSGE-ECSQEGCLSVPDINADITRAEFVTVKFQDVQGNAQQIEADS 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHELDHL G LFID+LS  K+  I  K+ KL
Sbjct: 126 LLAVCIQHELDHLIGKLFIDYLSPFKQKRIKTKLEKL 162


>gi|170724408|ref|YP_001758434.1| peptide deformylase [Shewanella woodyi ATCC 51908]
 gi|169809755|gb|ACA84339.1| peptide deformylase [Shewanella woodyi ATCC 51908]
          Length = 169

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 101/156 (64%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+ + N+D+   IDNM E MY   GIGLAA Q+   ++L+V+DLQD   
Sbjct: 9   FPDEKLRTIAKPVTEFNADLQTQIDNMFETMYEEKGIGLAATQVDYHHQLIVMDLQDEVE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFIN +I+  S  F   +EGCLS+P   A+V+R+  +T++ +D       + ADG
Sbjct: 69  R--PKVFINLEIVASSGHFE-NEEGCLSVPGIFANVERAEHVTIKALDREGNEFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           L   CLQHELDHL G LF+D+LS LKR  I +K+ K
Sbjct: 126 LFGICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEK 161


>gi|54310617|ref|YP_131637.1| peptide deformylase [Photobacterium profundum SS9]
 gi|46915060|emb|CAG21835.1| Putative polypeptide deformylase [Photobacterium profundum SS9]
          Length = 169

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 108/160 (67%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++IFPD  LR +++P+E I  DI N++D+MLE MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLIFPDERLRTIAKPVEAITPDIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I     +  + +EGCLS+P  RA V R+A ++V+ +D +       
Sbjct: 66  E--RDQPMVLINPEITDKRGEDGI-EEGCLSVPGSRALVSRAAEVSVKALDRDGNPFSFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+
Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKM 162


>gi|330720123|gb|EGG98527.1| Peptide deformylase [gamma proteobacterium IMCC2047]
          Length = 168

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 104/165 (63%), Gaps = 2/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR  + PI  ++  I  L D+MLE MY   GIGLAA Q+ V  R+VVID+ 
Sbjct: 5   PILEFPDPRLRNKALPINDVDDSIRKLADDMLETMYYAPGIGLAATQVNVQKRIVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +  P+VFINP++    D F    EGCLS+P +   V+R   I VR  D N +   I
Sbjct: 65  ED--KSQPLVFINPEVEVIGDGFEEMDEGCLSVPGFYETVQRPDHIKVRAQDRNGETFEI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             DG+LA C+QHE+DHL+G LF+D+LS LKR  I KK+ K+ + R
Sbjct: 123 EDDGMLAVCIQHEIDHLDGKLFVDYLSPLKRQRIRKKLEKIHRQR 167


>gi|27364480|ref|NP_760008.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|31076651|sp|Q8DDE3|DEF1_VIBVU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|27360599|gb|AAO09535.1| peptide deformylase [Vibrio vulnificus CMCP6]
          Length = 170

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 109/160 (68%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D +     + 
Sbjct: 66  S--RNEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGHEFTLE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|332525408|ref|ZP_08401568.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
 gi|332108677|gb|EGJ09901.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
          Length = 172

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 108/164 (65%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L +V++P+  +++ +  L+ +MLE MY ++G+GLAA Q+ V  RL V
Sbjct: 1   MAQLPILRYPDPRLHKVAKPVAAVDARVKQLVADMLETMYESEGVGLAATQVDVHERLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         PMVF+NP+I+  S++  +++EGCLS+P     V R+A +TVR +D    
Sbjct: 61  MDTS--PEHDQPMVFVNPQIVARSEELVIWEEGCLSVPQVWDKVTRNARVTVRALDREGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I  DGL A C QHE+DHL+G +F+++LS LKR+ I  KM+K
Sbjct: 119 EFEIALDGLAAVCAQHEIDHLDGKVFVEYLSLLKRERIKVKMAK 162


>gi|190571318|ref|YP_001975676.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018714|ref|ZP_03334522.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|238058217|sp|B3CMB1|DEF_WOLPP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190357590|emb|CAQ55031.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995665|gb|EEB56305.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 179

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 106/173 (61%), Gaps = 8/173 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P+VI PD  L   +  +  I   I  L+++M E MY  +G+GLAAVQ+GVL R+ +
Sbjct: 1   MSKLPIVIAPDERLTTRASEVIDITDKIKELVNDMFETMYYAEGLGLAAVQVGVLKRIFI 60

Query: 61  IDLQDHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P  +        INP+I   S +  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  MDVQPEKAEDGPAGYESTGKFCMINPEITELSGEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +Y + N + Q + A G LA C+QHELDHLNGIL++ HLS+LK DM  KK  K+
Sbjct: 121 KYKNLNNEEQTLKASGWLARCIQHELDHLNGILYVRHLSKLKYDMAMKKAQKV 173


>gi|312958120|ref|ZP_07772643.1| peptide deformylase [Pseudomonas fluorescens WH6]
 gi|311287551|gb|EFQ66109.1| peptide deformylase [Pseudomonas fluorescens WH6]
          Length = 212

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+  ++  +  L+D+M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 53  FPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVVMDLSED-- 110

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P V+INP+    +D+   YQEGCLS+P++  +V+R   + ++ +D + +   + A+G
Sbjct: 111 RSEPRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPFEMIAEG 170

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 171 LLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 206


>gi|121610998|ref|YP_998805.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
 gi|121555638|gb|ABM59787.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
          Length = 170

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 103/160 (64%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L R++RP+  ++  I  L D+ML  MY   GIGLAA Q+ V  RL+V+D+ 
Sbjct: 6   PILRYPDPRLHRIARPVLAVDERIRALADDMLATMYQAQGIGLAATQVDVHERLLVVDVS 65

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D      P+V INP+II  S +   + EGCLS+P    DV+R   + VR +D   Q Q+I
Sbjct: 66  DE--HDQPLVLINPEIIWTSAEKQTHNEGCLSVPGIYDDVERFDAVHVRALDTRGQPQVI 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA CLQHE+DHL G +F+ +LS LKR+ I  +M K
Sbjct: 124 EADGLLAMCLQHEMDHLQGKVFVQYLSPLKRNRIKTRMIK 163


>gi|121999101|ref|YP_001003888.1| peptide deformylase [Halorhodospira halophila SL1]
 gi|121590506|gb|ABM63086.1| peptide deformylase [Halorhodospira halophila SL1]
          Length = 169

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 107/163 (65%), Gaps = 3/163 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++++PDP LR  + P+ +++  +  L+D+MLE MY   GIGLAA Q+G   R+ VID+ +
Sbjct: 6   ILVYPDPRLRERAEPVAEVDDAVRRLVDDMLETMYEARGIGLAATQVGDRRRVAVIDVSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  P+V INP+I+  + + S  +EGCLSIP Y  DV R+  +  R +D +AQ     
Sbjct: 66  E--RDEPLVLINPEILEATGEAS-GEEGCLSIPGYYDDVARATRVRYRALDRDAQPIEGE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LA CLQHE+DHL+G LFID+LS LKR  + K+M K  +L
Sbjct: 123 AEGTLAVCLQHEIDHLDGRLFIDYLSELKRKRVRKRMEKRERL 165


>gi|302381971|ref|YP_003817794.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192599|gb|ADL00171.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264]
          Length = 194

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 107/176 (60%), Gaps = 18/176 (10%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH------ 66
           IL++VS+P+  ++  +  L+D+ML+ MY   GIGLAAVQIG L R+VV+DL D       
Sbjct: 17  ILKQVSKPVAVVDDAVRALMDDMLDTMYDAPGIGLAAVQIGELQRVVVMDLGDGPAPEAA 76

Query: 67  ------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                           NP  F+NP++I  SD+   Y+EGCLSIP+Y   V+R A + V Y
Sbjct: 77  EAAAEDEEGSEETRVPNPRFFVNPEVIWASDETFCYEEGCLSIPEYFDQVERPARVRVAY 136

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +D          +GL A C QHELDHLNG+LFIDHLSRL+RD    K+ K ++LR+
Sbjct: 137 LDRTGARIEGEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRAMSKVKKTMRLRE 192


>gi|320154884|ref|YP_004187263.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
 gi|319930196|gb|ADV85060.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
          Length = 170

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 109/160 (68%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D +     + 
Sbjct: 66  S--RNEPMVLINPEILEKHGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGHEFTLE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|167031105|ref|YP_001666336.1| peptide deformylase [Pseudomonas putida GB-1]
 gi|166857593|gb|ABY96000.1| peptide deformylase [Pseudomonas putida GB-1]
          Length = 168

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHLQVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +   +  +G
Sbjct: 67  RSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPFELECEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K
Sbjct: 127 LLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEK 162


>gi|120613319|ref|YP_972997.1| peptide deformylase [Acidovorax citrulli AAC00-1]
 gi|120591783|gb|ABM35223.1| peptide deformylase [Acidovorax citrulli AAC00-1]
          Length = 169

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 108/160 (67%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P++ ++  +  L+D+MLE MY   GIGLAA Q+ V  R++ ID+ 
Sbjct: 5   PILCYPDPRLHKVAQPVQVVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIITIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P+V INP+I+  S+D  V +EGCLS+P     V+RS  + V+ +D   Q ++I
Sbjct: 65  ED--RDTPLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSTAVRVQALDAQGQSRVI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLA C+QHE+DHL G +F+++LS LKR  I  KM K
Sbjct: 123 EAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLK 162


>gi|332531650|ref|ZP_08407547.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
 gi|332039013|gb|EGI75442.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
          Length = 174

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 107/161 (66%), Gaps = 2/161 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L  V++P++ +++ I  LI +M E MY  +GIGLAA QI V  RLVVID+ 
Sbjct: 5   PILTYPDPRLHTVAQPVQAVDARIKQLIADMFETMYDMNGIGLAATQINVHERLVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P VFINP+I+  S +  + +EGCLS+P     V+R   + VR +D   Q +++
Sbjct: 65  EG--RDQPQVFINPEIVWASPETKINEEGCLSVPGIYDGVERHERVHVRALDGEGQSRVV 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             +GLL+ C+QHE+DHL G +F+++LS LKR+ I  KM KL
Sbjct: 123 ECEGLLSICIQHEMDHLMGKVFVEYLSPLKRNRIKTKMQKL 163


>gi|322513216|ref|ZP_08066342.1| peptide deformylase [Actinobacillus ureae ATCC 25976]
 gi|322120992|gb|EFX92833.1| peptide deformylase [Actinobacillus ureae ATCC 25976]
          Length = 170

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ ID++ 
Sbjct: 6   VVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYENEGIGLAAPQVGVLKRVITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + N +V INP+I+    +  + +EGCLSIP YRA V R   + V+ ++   +  I  
Sbjct: 65  -GDKTNQVVLINPEILESCGETGI-EEGCLSIPGYRALVPRKEKVKVKALNRKGEEVIYD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL
Sbjct: 123 ADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKL 162


>gi|303245828|ref|ZP_07332110.1| peptide deformylase [Desulfovibrio fructosovorans JJ]
 gi|302492611|gb|EFL52479.1| peptide deformylase [Desulfovibrio fructosovorans JJ]
          Length = 177

 Score =  150 bits (380), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 104/161 (64%), Gaps = 1/161 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P PIL   S P+  +  +I  L D+M E MY+  G+GLAA Q+G   RLVVIDL     
Sbjct: 8   YPHPILAAKSEPVPGVTPEIRQLADDMAETMYANQGVGLAAPQVGRSIRLVVIDLSGPDK 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +  +NP +IT ++      EGCLS+ DYRA+VKR+A +TV   D +     + ADG
Sbjct: 68  REERINLVNP-VITKAEGEQEDDEGCLSVRDYRANVKRAATVTVCATDLDGNPFCLEADG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA CLQHE+DHL+G+LFIDH+SRLKR M  K++ +  + +
Sbjct: 127 LLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWAKQK 167


>gi|26986813|ref|NP_742238.1| peptide deformylase [Pseudomonas putida KT2440]
 gi|148545341|ref|YP_001265443.1| peptide deformylase [Pseudomonas putida F1]
 gi|32363155|sp|Q88RR1|DEF1_PSEPK RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|24981409|gb|AAN65702.1|AE016196_13 polypeptide deformylase [Pseudomonas putida KT2440]
 gi|148509399|gb|ABQ76259.1| peptide deformylase [Pseudomonas putida F1]
 gi|313496440|gb|ADR57806.1| Def [Pseudomonas putida BIRD-1]
          Length = 168

 Score =  150 bits (380), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV+DL +   
Sbjct: 9   FPDPRLRTLAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +   +  +G
Sbjct: 67  RSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPFELECEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K
Sbjct: 127 LLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEK 162


>gi|126668176|ref|ZP_01739137.1| peptide deformylase [Marinobacter sp. ELB17]
 gi|126627325|gb|EAZ97961.1| peptide deformylase [Marinobacter sp. ELB17]
          Length = 167

 Score =  150 bits (380), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 100/157 (63%), Gaps = 2/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP LR +++P+  +  +I  LID+M E MY   GIGLAA Q+ V  ++VV+DL +   
Sbjct: 8   YPDPRLRTLAKPVTTVTDEIRTLIDDMFETMYDAAGIGLAASQVNVHQQIVVMDLSED-- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P VFINPKI     D    QEGCLS+P +  +V+R     ++ +D N +   I A G
Sbjct: 66  NSEPKVFINPKIGILDGDLEAMQEGCLSVPGFYEEVERIEHCLIKALDRNGEAFEIEARG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHLNG LF+D+LS LKR  I KK+ KL
Sbjct: 126 LLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKL 162


>gi|331007625|ref|ZP_08330767.1| Peptide deformylase [gamma proteobacterium IMCC1989]
 gi|330418565|gb|EGG93089.1| Peptide deformylase [gamma proteobacterium IMCC1989]
          Length = 166

 Score =  150 bits (380), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ FPD  LR V++P+ ++      +ID+M E MY+  GIGLAA Q+ +  +++V
Sbjct: 1   MAQLPILEFPDARLRTVAKPVAEVTDATRRIIDDMFETMYAAPGIGLAATQVNIHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP I    ++   Y EGCLS+P +   V+R   I V  +D N  
Sbjct: 61  MDLSED--KSEPQVFINPSITVQGEELDSYDEGCLSVPGFYESVERPKSIKVEAIDRNGS 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             II  +GLLA C+QHE+DHLNG LF+D+LS +KR  I KK+ K
Sbjct: 119 PFIIEPEGLLAVCIQHEIDHLNGKLFVDYLSNMKRQRIRKKLEK 162


>gi|254361452|ref|ZP_04977592.1| peptide deformylase [Mannheimia haemolytica PHL213]
 gi|261491954|ref|ZP_05988531.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496243|ref|ZP_05992648.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153092962|gb|EDN73988.1| peptide deformylase [Mannheimia haemolytica PHL213]
 gi|261308074|gb|EEY09372.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312421|gb|EEY13547.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 170

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PD  L  V  P+E+++  +   ID+M E MY  +GIGLAA Q+GVL R++ ID++ 
Sbjct: 6   VVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEGIGLAAPQVGVLKRVITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + N +V INP+I+  S +  + +EGCLSIP +RA V R   + V+ ++   +  II 
Sbjct: 65  -GDKTNQVVLINPEILESSGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRQGEEIIID 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD L A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL
Sbjct: 123 ADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQKL 162


>gi|212632966|ref|YP_002309491.1| peptide deformylase [Shewanella piezotolerans WP3]
 gi|212554450|gb|ACJ26904.1| Polypeptide deformylase [Shewanella piezotolerans WP3]
          Length = 170

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 103/161 (63%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++PI + N+ +   ID+M E MY   GIGLAA Q+    +L+V+DLQD   
Sbjct: 9   FPDERLRTVAKPITEFNAALQTQIDDMFETMYEEKGIGLAATQVDFHQQLIVMDLQDEID 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFIN +II  S DF   +EGCLS+P   A V R+ F+T++ +D +     + A+G
Sbjct: 69  R--PKVFINLEIIAKSGDF-CNEEGCLSVPGIYAKVDRAEFVTIKALDRDGNEFTLEAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           L A CLQHELDHL G LF+D+LS LKR  I +K+ K  +L 
Sbjct: 126 LFAICLQHELDHLAGKLFVDYLSPLKRQRIKQKLEKAARLE 166


>gi|304412735|ref|ZP_07394338.1| peptide deformylase [Shewanella baltica OS183]
 gi|307305800|ref|ZP_07585546.1| peptide deformylase [Shewanella baltica BA175]
 gi|304348945|gb|EFM13360.1| peptide deformylase [Shewanella baltica OS183]
 gi|306911293|gb|EFN41719.1| peptide deformylase [Shewanella baltica BA175]
          Length = 170

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R    VFINP+II  S DF   +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVERHK--VFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|260775015|ref|ZP_05883915.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609105|gb|EEX35264.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 173

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+EK+  +I   +D+M+E MY  +GIGLAA Q+    R+VVID+ +
Sbjct: 6   VLTFPDERLRTVAKPVEKVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +     
Sbjct: 66  T--RDQPMVLINPEILDKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALDRDGKEYTFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|90581176|ref|ZP_01236975.1| peptide deformylase [Vibrio angustum S14]
 gi|90437697|gb|EAS62889.1| peptide deformylase [Vibrio angustum S14]
          Length = 169

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVVIDVSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV +NP+I     +  + +EGCLS+P  R  V R+A ++V  +D + +     
Sbjct: 66  E--RNQPMVLVNPEITEERGEDGI-EEGCLSVPTARGFVPRAAGVSVTALDRDGKEYSFK 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGLLA C+QHELDHL G LF+D+LS LKR  I +K+ K+
Sbjct: 123 ADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKI 162


>gi|162147911|ref|YP_001602372.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542528|ref|YP_002274757.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786488|emb|CAP56070.1| Peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530205|gb|ACI50142.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 179

 Score =  150 bits (379), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 106/161 (65%), Gaps = 2/161 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ P  ILR+ +RP+   ++  + + +  M   MY   GIGLAA Q+G+  R  ++DL
Sbjct: 14  PILVAPQAILRQKARPVRPEDAAGVRDALPRMFAAMYQAPGIGLAAPQVGMGLRFAIVDL 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +   R+ P++ INP +I  SD  +  +EGCLS+P+  A+V R   + VRY   +   + 
Sbjct: 74  GEEGERQ-PLILINPDVIAESDSLASREEGCLSLPNQYAEVIRPDRVRVRYRTLDGTEEE 132

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + ADGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K
Sbjct: 133 LEADGLLATCIQHEIDHLEGILFVDHLSTLKRNMIMRRLAK 173


>gi|145300986|ref|YP_001143827.1| peptide deformylase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|158514058|sp|A4ST57|DEF_AERS4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|142853758|gb|ABO92079.1| polypeptide deformylase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 170

 Score =  150 bits (379), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 111/159 (69%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V+ P+E    ++ +++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   FPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R++P+V INP+I+  +    + +EGCLS+PD+RA V R+ ++ VR +D N Q   + AD 
Sbjct: 67  REDPLVLINPEILEQAGSTGI-EEGCLSVPDHRALVPRAEWVKVRALDRNGQPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAR 164


>gi|260771088|ref|ZP_05880016.1| peptide deformylase [Vibrio furnissii CIP 102972]
 gi|260613977|gb|EEX39168.1| peptide deformylase [Vibrio furnissii CIP 102972]
 gi|315178587|gb|ADT85501.1| peptide deformylase [Vibrio furnissii NCTC 11218]
          Length = 170

 Score =  150 bits (379), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 110/165 (66%), Gaps = 3/165 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ V  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP I+    +  + +EGCLS+P  RA V R+A +TV+ ++ + +     
Sbjct: 66  T--RDEPMVLINPVILEKRGEDGI-EEGCLSVPGARALVARAAEVTVKALNRDGEEYTFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  D
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFND 167


>gi|37681409|ref|NP_936018.1| peptide deformylase [Vibrio vulnificus YJ016]
 gi|39930925|sp|Q7MGK6|DEF2_VIBVY RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|37200161|dbj|BAC95989.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016]
          Length = 202

 Score =  150 bits (379), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 109/160 (68%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 38  VLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVVIDISE 97

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D +     + 
Sbjct: 98  S--RNEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGHEFTLE 154

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 155 ADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 194


>gi|24371632|ref|NP_715674.1| polypeptide deformylase [Shewanella oneidensis MR-1]
 gi|32363158|sp|Q8EKQ8|DEF1_SHEON RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|24345388|gb|AAN53119.1|AE015454_13 polypeptide deformylase [Shewanella oneidensis MR-1]
          Length = 168

 Score =  150 bits (378), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 101/159 (63%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V+DLQD   
Sbjct: 9   FPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+II  S DF   +EGCLS+P   A V R+ F+TV+ +D +     + AD 
Sbjct: 69  R--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEFTVEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +
Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAK 164


>gi|317050727|ref|YP_004111843.1| peptide deformylase [Desulfurispirillum indicum S5]
 gi|316945811|gb|ADU65287.1| peptide deformylase [Desulfurispirillum indicum S5]
          Length = 171

 Score =  150 bits (378), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 107/164 (65%), Gaps = 2/164 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-L 63
           P++ +PDP+L+++S+P+ + +S +  L+ +M + MY+ +G+GLAA QIG+L R+ V+D  
Sbjct: 4   PILTYPDPLLKKISQPVTQFDSALQQLVSDMFDTMYNANGVGLAAPQIGILRRICVLDPA 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P+V INP+I++  +  + ++EGCLS+P Y  ++KR   I V++ D   Q Q 
Sbjct: 64  SGKEEEAQPLVLINPQILS-GEGLTTFEEGCLSVPGYYGEIKRYERIQVQFNDLQGQEQT 122

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              DG  A   QHE+DHLNG LFI+HL   +RD+I +K+ K ++
Sbjct: 123 AILDGFTAIIAQHEMDHLNGKLFIEHLGSSERDLIRRKIRKAMK 166


>gi|260914694|ref|ZP_05921160.1| peptide deformylase [Pasteurella dagmatis ATCC 43325]
 gi|260631293|gb|EEX49478.1| peptide deformylase [Pasteurella dagmatis ATCC 43325]
          Length = 170

 Score =  150 bits (378), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 111/165 (67%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++++PD  L+ V++P+E++N  I  ++D+M E MY  +GIGLAA Q+ +  R++ 
Sbjct: 1   MAKLNVLVYPDDRLKIVAKPVEEVNDKIREIVDDMFETMYHEEGIGLAATQVDIHQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N  V INP+II    +  + +EGCLS+P +R  V R   +TV+ +D N +
Sbjct: 61  IDVE--GTKENQYVLINPEIIESCGETGI-EEGCLSLPGFRGFVPRKEKVTVKALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              + ADGLLA C+QHE+DHLNGI+F D+LS LKR  + +K+ KL
Sbjct: 118 EYTLNADGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLVKL 162


>gi|153834309|ref|ZP_01986976.1| peptide deformylase [Vibrio harveyi HY01]
 gi|148869317|gb|EDL68331.1| peptide deformylase [Vibrio harveyi HY01]
          Length = 172

 Score =  150 bits (378), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 110/160 (68%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +     
Sbjct: 66  T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEYTFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I +K++K+
Sbjct: 123 ADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQEKLAKI 162


>gi|262273080|ref|ZP_06050897.1| peptide deformylase [Grimontia hollisae CIP 101886]
 gi|262222836|gb|EEY74144.1| peptide deformylase [Grimontia hollisae CIP 101886]
          Length = 170

 Score =  149 bits (377), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E +  +I  ++D+MLE MY  DGIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVESVTPEIQKIVDDMLETMYQEDGIGLAATQVDIHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R++ +TV+ +D +       
Sbjct: 66  T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRASEVTVKALDRDGNEYQFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LK+  I +K+ K+
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKQQRIKQKLEKI 162


>gi|307543965|ref|YP_003896444.1| peptide deformylase [Halomonas elongata DSM 2581]
 gi|307215989|emb|CBV41259.1| peptide deformylase [Halomonas elongata DSM 2581]
          Length = 170

 Score =  149 bits (377), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P++ FPD  LR  +  +E ++ ++  L+D+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLPILEFPDERLRTEAAAVETVDDEVRQLVDDMLETMYDARGIGLAATQVDVHRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +  P+V INP+     D+    QEGCLSIP+Y A+V R+  + ++ ++   +
Sbjct: 61  MDVSDD--QSAPLVLINPEYTPIGDEREPMQEGCLSIPEYYAEVPRALKVHLKALNRQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A+GLLA C+QHE DHL G+LF+D+LS LKRD + KKM K
Sbjct: 119 PYELEAEGLLAHCIQHECDHLRGVLFVDYLSPLKRDRVMKKMQK 162


>gi|90413779|ref|ZP_01221767.1| peptide deformylase [Photobacterium profundum 3TCK]
 gi|90325248|gb|EAS41745.1| peptide deformylase [Photobacterium profundum 3TCK]
          Length = 169

 Score =  149 bits (377), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 109/165 (66%), Gaps = 3/165 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR +++P+E I  +I N++D+MLE MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDERLRTIAKPVEAITPEIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I     +  + +EGCLS+P  RA V R+A ++V+ +D +       
Sbjct: 66  E--RDQPMVLINPEITDKRGEDGI-EEGCLSVPGSRALVPRAAEVSVKALDRDGNPFSFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  D
Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFND 167


>gi|253991650|ref|YP_003043006.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253783100|emb|CAQ86265.1| peptide deformylase [Photorhabdus asymbiotica]
          Length = 170

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR ++ P+EK+++ I +++D+M E MY+ DGIGLAA Q+ +  R++VID+ D   
Sbjct: 9   YPDERLRTIATPVEKVDAKIQSIVDDMFETMYAEDGIGLAATQVDIHQRIIVIDVSDT-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  +    + +EGCLSIP+ RA V R+  + +R +D N Q   + ADG
Sbjct: 67  RNERLVLINPELLEKNGKTGI-EEGCLSIPEQRALVSRAEKVKIRALDYNGQSFELQADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLYKQR 166


>gi|296125655|ref|YP_003632907.1| peptide deformylase [Brachyspira murdochii DSM 12563]
 gi|296017471|gb|ADG70708.1| peptide deformylase [Brachyspira murdochii DSM 12563]
          Length = 189

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/162 (46%), Positives = 103/162 (63%), Gaps = 8/162 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + LVI+ D  L++VS  IEKI+ +I+ LID+M E MY   G+GLAAVQIG+L RL+VI +
Sbjct: 3   RELVIYGDERLQQVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGILKRLIVISV 62

Query: 64  QDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D      P   +  INP+II   ++  + +EGCLS P+ R DV R   I V+Y+D    
Sbjct: 63  PDFDDETKPDFKLALINPEIIWHGEEKEILEEGCLSFPEIRDDVARYKEIKVKYLDKEGN 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS-----RLKRDM 157
            QI+ A+G +A  LQHE+DH NGI FID L      RLKR++
Sbjct: 123 EQILEAEGYIAKVLQHEIDHTNGISFIDRLESYQKRRLKREL 164


>gi|148651859|ref|YP_001278952.1| peptide deformylase [Psychrobacter sp. PRwf-1]
 gi|172048436|sp|A5WBG1|DEF_PSYWF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148570943|gb|ABQ93002.1| peptide deformylase [Psychrobacter sp. PRwf-1]
          Length = 176

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 108/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP LR ++ PI+ ++++I  LI +M+E MY   GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSYPDPRLRTIAEPIKTVDAEIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           ++    +P VFINPK+    +D   Y+EGCLS+PD    V R   + +  +D +      
Sbjct: 65  EN--NDSPRVFINPKVTPLVEDKKPYEEGCLSVPDVYDSVDRPVKVKIEALDADGNAFEE 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            A+GLLA C+QHE+DHLNG+LF+D+LSRLK+     K+ K ++ R+
Sbjct: 123 IAEGLLAVCIQHEMDHLNGVLFVDYLSRLKQTRARDKVKKYLKTRE 168


>gi|77166461|ref|YP_344986.1| peptide deformylase [Nitrosococcus oceani ATCC 19707]
 gi|254435308|ref|ZP_05048815.1| peptide deformylase [Nitrosococcus oceani AFC27]
 gi|123593232|sp|Q3J6U0|DEF_NITOC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|76884775|gb|ABA59456.1| peptide deformylase [Nitrosococcus oceani ATCC 19707]
 gi|207088419|gb|EDZ65691.1| peptide deformylase [Nitrosococcus oceani AFC27]
          Length = 167

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 101/156 (64%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAAVQ+ V  ++VVID+ +   
Sbjct: 9   YPDPRLRRKAQPVAAVDKSIKKLADDMLETMYQAPGIGLAAVQVNVPKQVVVIDISED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           + +P+V INP+I+      +  +EGCLS+P+    V R+A ITV Y+D   Q Q +    
Sbjct: 67  KSSPLVLINPEIVARQGK-AESEEGCLSVPEIFEPVTRAAEITVHYLDREGQKQELQTQE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLATC+QHELDHL G LFID+ S LKR  I KK  K
Sbjct: 126 LLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEK 161


>gi|221069823|ref|ZP_03545928.1| peptide deformylase [Comamonas testosteroni KF-1]
 gi|220714846|gb|EED70214.1| peptide deformylase [Comamonas testosteroni KF-1]
          Length = 170

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++VID+ 
Sbjct: 5   PILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  PM  INP+I+  SD+  + +EGCLS+P     V+RS  + V+ +D N   + I
Sbjct: 65  EE--RNEPMALINPEILWASDETQLGEEGCLSVPGIYDGVERSIAVKVKALDENGNSREI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K
Sbjct: 123 DAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVK 162


>gi|33152876|ref|NP_874229.1| peptide deformylase [Haemophilus ducreyi 35000HP]
 gi|39930849|sp|Q7VKK9|DEF_HAEDU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33149101|gb|AAP96618.1| peptide deformylase [Haemophilus ducreyi 35000HP]
          Length = 171

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PD  L +V  P+ +++ ++   ID+M + MY   GIGLAA Q+GVL R++ ID++ 
Sbjct: 6   VVLYPDDRLTKVCEPVTQVDDELNQFIDDMFDTMYQEGGIGLAASQVGVLKRVITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + N +V INP+I+    +  + +EGCLSIP YRA V R   ITV+ ++   +  I +
Sbjct: 65  -GDKTNQVVLINPEILESCGETGI-EEGCLSIPGYRALVPRKEKITVKALNRQGEEVIYH 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD L A C+QHE+DHLNGI+F+DH+S LKR  I  KM KL
Sbjct: 123 ADDLFAICIQHEIDHLNGIVFVDHISNLKRQRIKDKMQKL 162


>gi|284006131|emb|CBA71372.1| polypeptide deformylase [Arsenophonus nasoniae]
          Length = 171

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+++ P++K++++I  ++++M E MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   YPDERLRKIAEPVKKVDAEIQRIVNDMFETMYEEEGIGLAATQVNIHQRIIVIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP I+  S +  + +EGCLS+P+ RA V R+ ++ ++ +D N +   +  D 
Sbjct: 67  RNERLVLINPVILETSGETGI-EEGCLSVPEQRAFVPRAKWVKIKALDVNGKEFELETDD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHLNG LFID+LS LKR  I +K+ KL +L+
Sbjct: 126 LLAICIQHEIDHLNGKLFIDYLSALKRQRIRQKIEKLERLK 166


>gi|85711005|ref|ZP_01042066.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
 gi|85695409|gb|EAQ33346.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
          Length = 173

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PD  LR V++PIE+++  +   ID+M E MY + G+GLAA Q+ V  RL V
Sbjct: 1   MTKLTVLKYPDERLRTVAQPIEQVDDALRATIDDMFETMYESQGVGLAATQVDVHQRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  ++  +  P+VFINP+I T S+     +EGCLS P+  A V+R+  ITV+ +D N +
Sbjct: 61  ADCSEN--QNEPLVFINPEI-TRSEGHFTNEEGCLSFPNVFAKVERAESITVQALDKNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K  +L++
Sbjct: 118 RFSMDAEGLLAICVQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLQE 167


>gi|163751680|ref|ZP_02158899.1| polypeptide deformylase [Shewanella benthica KT99]
 gi|161328419|gb|EDP99575.1| polypeptide deformylase [Shewanella benthica KT99]
          Length = 170

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 105/161 (65%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+ + N+ +   I+NM E MY   G+GLAA Q+    +L+++DLQD   
Sbjct: 9   FPDERLRTLAKPVTEFNTGLQTQINNMFETMYEDKGVGLAATQVDYHRQLIIMDLQDEEE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFIN +I+  S  FS  +EGCLS+P + AD++R+  +T++ +D +     + ADG
Sbjct: 69  R--PKVFINLEIVASSGHFS-NEEGCLSVPGFYADIERAEHVTIKALDRDGIEFTLDADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           L A CLQHELDHL G LF+D+LS LKR  I +K+ K  +L 
Sbjct: 126 LFAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARLE 166


>gi|225619787|ref|YP_002721044.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1]
 gi|254767571|sp|C0QZQ2|DEF_BRAHW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225214606|gb|ACN83340.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1]
          Length = 187

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 105/165 (63%), Gaps = 3/165 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + LVI+ D  L++VS  IEKI+ +I+ LID+M E MY   G+GLAAVQIGVL RLVVI +
Sbjct: 3   RELVIYGDERLQKVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGVLKRLVVISV 62

Query: 64  QDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D    + P   +  INP+II  +D+    +EGCLS P+ R DV R   I V+Y+D    
Sbjct: 63  PDFDDEEKPDFKLALINPEIIWHNDETESLEEGCLSFPEIRDDVARYTQIKVKYLDREGN 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            QI+ A+  +A  LQHE+DH NGI FID L   ++  + +++ +L
Sbjct: 123 EQILDAENYIAKVLQHEIDHTNGISFIDRLESYQKRRLKRELKEL 167


>gi|156972726|ref|YP_001443633.1| peptide deformylase [Vibrio harveyi ATCC BAA-1116]
 gi|166198526|sp|A7N121|DEF_VIBHB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|156524320|gb|ABU69406.1| hypothetical protein VIBHAR_00391 [Vibrio harveyi ATCC BAA-1116]
          Length = 172

 Score =  149 bits (375), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 109/160 (68%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +     
Sbjct: 66  T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEYTFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|89902619|ref|YP_525090.1| peptide deformylase [Rhodoferax ferrireducens T118]
 gi|89347356|gb|ABD71559.1| peptide deformylase [Rhodoferax ferrireducens T118]
          Length = 169

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 106/160 (66%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L  V++P+  ++  +  LI +MLE MY   GIGLAA QI V  RL+V+D+ 
Sbjct: 5   PILCYPDPKLHTVAKPVSTVDVRVQTLIVDMLETMYEAKGIGLAATQINVHERLIVVDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P+V INP+++  S +  + +EGCLS+P     V+R   +TV  +D   Q ++I
Sbjct: 65  EE--RDAPLVLINPQLVWSSAETHLNEEGCLSVPGIYDGVERFDAVTVTALDGQGQSRLI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLA C+QHE+DHL G +F+++LS LKR+ I KKM K
Sbjct: 123 EAEGLLAVCIQHEMDHLQGKVFVEYLSPLKRNRIKKKMLK 162


>gi|58040267|ref|YP_192231.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
           621H]
 gi|58002681|gb|AAW61575.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
           621H]
          Length = 184

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 108/166 (65%), Gaps = 1/166 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++I P P+LR V+R +   + + I   +  M   MY   GIGLAA Q+G+  R  ++D+
Sbjct: 17  PILIAPQPVLREVTRDVRPEDIAFIREQLPGMFSAMYKAPGIGLAAPQVGLGMRFALVDV 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +    + PM+ INP+II+ SD  +  +EGCLS+P+  A+V R   I VRY +   +   
Sbjct: 77  AEEDAPREPMLLINPEIISDSDQLAAREEGCLSLPNQYAEVVRPESIRVRYRNLAGETIE 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             A GLLATC+QHE+DHL+GILF+DHLS LKR+MI ++++K  +LR
Sbjct: 137 RDASGLLATCIQHEMDHLDGILFVDHLSTLKRNMIMRRLAKEQKLR 182


>gi|46143358|ref|ZP_00204456.1| COG0242: N-formylmethionyl-tRNA deformylase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|190151040|ref|YP_001969565.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303249953|ref|ZP_07336155.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|303253125|ref|ZP_07339274.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307246635|ref|ZP_07528706.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307248763|ref|ZP_07530776.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307253382|ref|ZP_07535253.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307255620|ref|ZP_07537425.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257796|ref|ZP_07539553.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307260071|ref|ZP_07541783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|307262201|ref|ZP_07543851.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|307264402|ref|ZP_07545988.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|238692356|sp|B3GYT7|DEF_ACTP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189916171|gb|ACE62423.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302647807|gb|EFL78014.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302651016|gb|EFL81170.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306852507|gb|EFM84741.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306854690|gb|EFM86880.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306859061|gb|EFM91103.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861469|gb|EFM93458.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306863702|gb|EFM95628.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306865907|gb|EFM97783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306868075|gb|EFM99901.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306870218|gb|EFN01976.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 170

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ ID++ 
Sbjct: 6   VVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + N +V INP+I+    +  + +EGCLSIP +RA V R   + V+ ++   +  I  
Sbjct: 65  -GDKTNQVVLINPEILESCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGEEVIYE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL
Sbjct: 123 ADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKL 162


>gi|262089743|gb|ACY24837.1| Def peptide deformylase [uncultured organism]
          Length = 169

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 97/150 (64%), Gaps = 2/150 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+ ++N  +  LID+M E MY   G+GLAA QI V  R+VVID+ +   
Sbjct: 9   FPDPRLRTIAKPVTEVNDRVRKLIDDMFETMYDAPGVGLAASQINVHERIVVIDVSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  PMVFINP++     D   Y EGCLS+P +   V+R   I+V  +D + +   I  +G
Sbjct: 67  KSQPMVFINPEVTVLDSDLHEYDEGCLSVPGFYETVERPEHISVTALDRDGKSFTIKPEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           LLA C+QHELDHLNG LF+D++S  KR  I
Sbjct: 127 LLAVCIQHELDHLNGKLFVDYISSFKRTRI 156


>gi|332139430|ref|YP_004425168.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
 gi|238693290|sp|B4S291|DEF_ALTMD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|327549452|gb|AEA96170.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 169

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV+D+ +   
Sbjct: 9   FPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVVMDVSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+I T  D  ++ +EGCLS+P   A V+R+  ITV+ +D N +   + A+G
Sbjct: 67  QNEPRVFINPEI-TRKDGSTISEEGCLSVPGNYAKVERAEAITVKALDQNGEAFELDAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 126 LLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165


>gi|237749120|ref|ZP_04579600.1| peptide deformylase [Oxalobacter formigenes OXCC13]
 gi|229380482|gb|EEO30573.1| peptide deformylase [Oxalobacter formigenes OXCC13]
          Length = 208

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 113/165 (68%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L + SRP+      + +LI +M + MY   G+GLAA QI V  +L+V
Sbjct: 30  MARLPILRYPDPRLLKPSRPVTDFGDSLKSLIADMAQTMYEAPGVGLAAPQINVHKQLIV 89

Query: 61  IDLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ID+ +   +KN + VFINP+I+  S++ ++++EGCLS+P    +++R A +TVR +D N 
Sbjct: 90  IDVSE---QKNELRVFINPQIVKASEEKAIFEEGCLSLPGIYDEIERPAKVTVRALDANG 146

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K
Sbjct: 147 KEFELEAEGLLAVCVQHEIDHLKGSIFVDYLSPMKRNRIKKKLLK 191


>gi|91226303|ref|ZP_01261143.1| peptide deformylase [Vibrio alginolyticus 12G01]
 gi|262392831|ref|YP_003284685.1| peptide deformylase [Vibrio sp. Ex25]
 gi|91189314|gb|EAS75593.1| peptide deformylase [Vibrio alginolyticus 12G01]
 gi|262336425|gb|ACY50220.1| peptide deformylase [Vibrio sp. Ex25]
          Length = 172

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 108/160 (67%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +     
Sbjct: 66  T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEFTFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|307251005|ref|ZP_07532930.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306856945|gb|EFM89076.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 170

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ ID++ 
Sbjct: 6   VVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + N +V INP+I+    +  + +EGCLSIP +RA V R   + V+ ++   +  I  
Sbjct: 65  -GDKTNQVVLINPEILGSCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGEEVIYE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL
Sbjct: 123 ADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKL 162


>gi|300718672|ref|YP_003743475.1| peptide deformylase [Erwinia billingiae Eb661]
 gi|299064508|emb|CAX61628.1| Peptide deformylase [Erwinia billingiae Eb661]
          Length = 174

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 110/157 (70%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   FPDERLRIVAKPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D       + ADG
Sbjct: 67  REERLVLINPEMLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGNSYELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHL G LFID+LS +KR  I +K+ KL
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKL 162


>gi|319796457|ref|YP_004158097.1| peptide deformylase [Variovorax paradoxus EPS]
 gi|315598920|gb|ADU39986.1| peptide deformylase [Variovorax paradoxus EPS]
          Length = 172

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 109/164 (66%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ +PD  L  V++P++ +++ I  L+ +MLE MY  +GIGLAA QI V  RLVV
Sbjct: 1   MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDAEGIGLAATQIDVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I   SD+  + +EGCLS+P     V RS  + V+ +D N +
Sbjct: 61  IDVSEE--RNKPIVLINPEITWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + I ADGLLA C+QHELDHL G +F+++LS LKR+ I  K+ K
Sbjct: 119 MRTIEADGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLK 162


>gi|225698067|pdb|3FWX|A Chain A, The Crystal Structure Of The Peptide Deformylase From
           Vibrio Cholerae O1 Biovar El Tor Str. N16961
 gi|225698068|pdb|3FWX|B Chain B, The Crystal Structure Of The Peptide Deformylase From
           Vibrio Cholerae O1 Biovar El Tor Str. N16961
          Length = 169

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 108/160 (67%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+ LE  Y+ +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEQVTPEIQQIVDDXLETXYAEEGIGLAATQVDIHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  P V INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q     
Sbjct: 66  T--RDQPXVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+
Sbjct: 123 ADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKI 162


>gi|332976314|gb|EGK13171.1| peptide deformylase [Psychrobacter sp. 1501(2011)]
          Length = 176

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 109/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP LR ++ P++ +++DI  LI +M+E MY   GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSYPDPRLRTIAEPVKTVDADIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           ++    +P VFINPKI    +D   Y+EGCLS+PD    V+R   + +  +D + +    
Sbjct: 65  EN--NDSPRVFINPKITPLVEDKKPYEEGCLSVPDVYDSVERPVKVKIEALDGDGKPFEE 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            A+GLLA C+QHE+DHLNG+LF+D+LS LK+     K+ K ++ R+
Sbjct: 123 IAEGLLAVCIQHEMDHLNGVLFVDYLSSLKQTRARDKVRKYLKTRE 168


>gi|239993910|ref|ZP_04714434.1| peptide deformylase [Alteromonas macleodii ATCC 27126]
          Length = 169

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV+D+ +   
Sbjct: 9   FPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVVMDVSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+II   D  ++ +EGCLS+P   A V+R+  ITV+ +D N +   + A+G
Sbjct: 67  QNEPRVFINPEIIR-KDGSTISEEGCLSVPGNYAKVERAESITVKALDQNGESFELDAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 126 LLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165


>gi|325577099|ref|ZP_08147583.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160681|gb|EGC72802.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
          Length = 175

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ V  P+ ++N DI  ++D+M + MY  +GIGLAA Q+ +L R++ ID++ 
Sbjct: 12  VLIYPDDHLKIVCEPVAEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDIE- 70

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N +V INP+I+    +  + +EGCLSIP +RA V R   +TV+ +D + +   + 
Sbjct: 71  -GDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLD 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K
Sbjct: 129 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 167


>gi|329849466|ref|ZP_08264312.1| peptide deformylase [Asticcacaulis biprosthecum C19]
 gi|328841377|gb|EGF90947.1| peptide deformylase [Asticcacaulis biprosthecum C19]
          Length = 177

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 115/175 (65%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P P+L++VS+P++K++ D+  L+D+MLE MY   GIGLAAVQIG   R++V
Sbjct: 1   MAIREILTVPHPVLKQVSKPVDKVDDDLRRLMDDMLETMYDAPGIGLAAVQIGEPIRVIV 60

Query: 61  IDLQDHAHR--------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +DLQ+            K P  F+NP+II  S++ + Y+EGCLS+P+   +V R + + +
Sbjct: 61  MDLQEKPEGAEPDAEGVKKPRYFVNPEIIWRSEEVAPYEEGCLSVPEIYDEVLRPSKVKL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +Y+D N       ADGL A C+QHE+DHL G LFIDHLS+LKRD    K+ KL +
Sbjct: 121 KYLDYNGNAVEEDADGLFAVCIQHEMDHLEGTLFIDHLSKLKRDRAITKVKKLTR 175


>gi|188492250|ref|ZP_02999520.1| peptide deformylase [Escherichia coli 53638]
 gi|291284645|ref|YP_003501463.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615]
 gi|188487449|gb|EDU62552.1| peptide deformylase [Escherichia coli 53638]
 gi|209757364|gb|ACI76994.1| peptide deformylase [Escherichia coli]
 gi|290764518|gb|ADD58479.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615]
 gi|320661377|gb|EFX28792.1| peptide deformylase [Escherichia coli O55:H7 str. USDA 5905]
          Length = 169

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 115/162 (70%), Gaps = 3/162 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+D
Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167


>gi|42524171|ref|NP_969551.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100]
 gi|39576379|emb|CAE80544.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100]
          Length = 201

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 106/175 (60%), Gaps = 17/175 (9%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           ++ FPDP LR VS+P++    +I  L ++M+E MY  +GIGLAA Q+G L R+VVID   
Sbjct: 5   ILTFPDPKLREVSQPVKTFGPEIAKLAEDMVETMYHANGIGLAAPQVGELVRMVVIDTRP 64

Query: 64  QDHAHR--------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D   R              K P++ INP+I+   +  + + EGCLSIP Y   V+R  +
Sbjct: 65  KDEKGRRYKYEEMTELEAAVKQPLILINPEIVK-GEGKTTFDEGCLSIPGYYETVERYNY 123

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           I ++  D N +  I+  DGLLA C+QHE+DHL G LFIDHLS +K + I  ++ K
Sbjct: 124 IEMKAFDVNGKEYIVKTDGLLAICMQHEMDHLEGTLFIDHLSFVKGNKIKNQIKK 178


>gi|269962644|ref|ZP_06176989.1| peptide deformylase [Vibrio harveyi 1DA3]
 gi|269832567|gb|EEZ86681.1| peptide deformylase [Vibrio harveyi 1DA3]
          Length = 193

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 109/160 (68%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ V  R+VVID+ +
Sbjct: 27  VLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHKRIVVIDISE 86

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +     
Sbjct: 87  T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEYTFD 143

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 144 ADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKI 183


>gi|300115536|ref|YP_003762111.1| peptide deformylase [Nitrosococcus watsonii C-113]
 gi|299541473|gb|ADJ29790.1| peptide deformylase [Nitrosococcus watsonii C-113]
          Length = 167

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 103/160 (64%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAA+Q+ V  ++VVID+ +   
Sbjct: 9   YPDPRLRRKAQPVAVVDKSIRKLADDMLETMYQAPGIGLAAIQVNVPKQVVVIDISED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           + +P+V INP+II      +  +EGCLS+P+    V R+A ITV Y+D   Q Q +    
Sbjct: 67  KSSPLVLINPEIIARQGK-AESEEGCLSVPEIFEPVTRAAEITVHYLDREGQKQELQTQE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLATC+QHELDHL G LFID+ S LKR  I KK  K  +L
Sbjct: 126 LLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165


>gi|329295654|ref|ZP_08252990.1| peptide deformylase [Plautia stali symbiont]
          Length = 170

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 109/159 (68%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR+++ P+  +N+D+  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDDRLRKIAAPVAAVNADVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +V INP+++  S +  + +EGCLSIP+ RA V R+  + VR +D +     +  DG
Sbjct: 67  REERLVLINPELLEKSGETGM-EEGCLSIPEQRAFVPRAERVKVRALDRDGNSFELETDG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHELDHL+G LFID+LS LKR  I +K+ KL +
Sbjct: 126 LLAICIQHELDHLDGKLFIDYLSPLKRQRIKQKLEKLAR 164


>gi|326567834|gb|EGE17938.1| peptide deformylase [Moraxella catarrhalis 12P80B1]
 gi|326568164|gb|EGE18246.1| peptide deformylase [Moraxella catarrhalis BC8]
 gi|326573749|gb|EGE23707.1| peptide deformylase [Moraxella catarrhalis O35E]
          Length = 184

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 106/166 (63%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP LR +++P+   +  +  LI++M E MY   GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIVMDLA 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                 +P VFINPK+    D+ S YQEGCLS+P+    ++R + + +  +D + Q   I
Sbjct: 65  RKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQPFEI 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            A+GLLA C+QHE+DHLNG LF+D+LS LK+     K+ K ++ R+
Sbjct: 125 EAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170


>gi|296114064|ref|YP_003628002.1| peptide deformylase [Moraxella catarrhalis RH4]
 gi|295921758|gb|ADG62109.1| peptide deformylase [Moraxella catarrhalis RH4]
 gi|326559449|gb|EGE09872.1| peptide deformylase [Moraxella catarrhalis 7169]
 gi|326561289|gb|EGE11648.1| peptide deformylase [Moraxella catarrhalis 46P47B1]
 gi|326565177|gb|EGE15368.1| peptide deformylase [Moraxella catarrhalis 103P14B1]
 gi|326566131|gb|EGE16288.1| peptide deformylase [Moraxella catarrhalis BC1]
 gi|326572198|gb|EGE22194.1| peptide deformylase [Moraxella catarrhalis BC7]
 gi|326572807|gb|EGE22792.1| peptide deformylase [Moraxella catarrhalis CO72]
 gi|326574626|gb|EGE24562.1| peptide deformylase [Moraxella catarrhalis 101P30B1]
          Length = 184

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 106/166 (63%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP LR +++P+   +  +  LI++M E MY   GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIVMDLA 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                 +P VFINPK+    D+ S YQEGCLS+P+    ++R + + +  +D + Q   I
Sbjct: 65  RKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQPFEI 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            A+GLLA C+QHE+DHLNG LF+D+LS LK+     K+ K ++ R+
Sbjct: 125 EAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170


>gi|285019618|ref|YP_003377329.1| peptide deformylase [Xanthomonas albilineans GPE PC73]
 gi|283474836|emb|CBA17335.1| putative peptide deformylase protein [Xanthomonas albilineans]
          Length = 170

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 104/159 (65%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           FPD  LR  + P+   E  +     L+D+M + MY+  GIGLAA Q+ V  R +VID+ +
Sbjct: 9   FPDSRLRTKAEPVDPAEVASVAFQRLLDDMFDTMYAAPGIGLAASQVDVHKRFMVIDVSE 68

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +  P VF+NP+I+    +  V+QEGCLS+P   ADV RS  ITVRY+D   Q Q + 
Sbjct: 69  E--KNAPHVFVNPQIVQREGE-QVHQEGCLSVPGIYADVTRSESITVRYLDRQGQSQELT 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK+ K
Sbjct: 126 TDGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLVK 164


>gi|114327357|ref|YP_744513.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
 gi|114315531|gb|ABI61591.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
          Length = 205

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 107/161 (66%), Gaps = 2/161 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++I P   L+  +RP+   ++  I +L+  M   MY   GIGLAA QI  L RL V+D+
Sbjct: 38  PILIAPHKTLKTRARPVTAGDASLIRDLVPRMFATMYKAPGIGLAAPQIDSLLRLAVVDV 97

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                +K P+V INP II  S++ +  +EGCLS+P+  ADV R A I +RY D +   + 
Sbjct: 98  SPD-DQKAPLVLINPDIIARSEEMATREEGCLSLPNQYADVTRPARIKLRYEDLDGSRRE 156

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + AD LLATC+QHE+DHL+GILF+DHLS LKR+M+ ++++K
Sbjct: 157 MEADDLLATCIQHEIDHLDGILFVDHLSTLKRNMLMRRLAK 197


>gi|323493839|ref|ZP_08098957.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
 gi|323311973|gb|EGA65119.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
          Length = 172

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VVID+ D
Sbjct: 6   VLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDVSD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ ++ + +     
Sbjct: 66  T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGEEFTFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|16762876|ref|NP_458493.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144363|ref|NP_807705.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213161458|ref|ZP_03347168.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213418738|ref|ZP_03351804.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213584235|ref|ZP_03366061.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213650879|ref|ZP_03380932.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|289824191|ref|ZP_06543786.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|23396544|sp|Q8Z1W9|DEF_SALTI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|25303718|pir||AB1010 formylmethionine deformylase (EC 3.5.1.31) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505183|emb|CAD09179.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140001|gb|AAO71565.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 169

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N     + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGNPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|239818071|ref|YP_002946981.1| peptide deformylase [Variovorax paradoxus S110]
 gi|239804648|gb|ACS21715.1| peptide deformylase [Variovorax paradoxus S110]
          Length = 173

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 109/164 (66%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ +PD  L  V++P++ +++ I  L+ +MLE MY   GIGLAA Q+ V  RLVV
Sbjct: 1   MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDASGIGLAATQVDVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+II  SD+  + +EGCLS+P     V RS  + V+ +D N +
Sbjct: 61  IDVSEE--RNEPLVLINPEIIWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + I A+GLLA C+QHELDHL G +F+++LS LKR+ I  K+ K
Sbjct: 119 LRTIEAEGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLK 162


>gi|163803316|ref|ZP_02197194.1| peptide deformylase [Vibrio sp. AND4]
 gi|159172886|gb|EDP57725.1| peptide deformylase [Vibrio sp. AND4]
          Length = 172

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 109/160 (68%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDVSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +     
Sbjct: 66  T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEYTFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|294789398|ref|ZP_06754635.1| peptide deformylase [Simonsiella muelleri ATCC 29453]
 gi|294482611|gb|EFG30301.1| peptide deformylase [Simonsiella muelleri ATCC 29453]
          Length = 171

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 104/160 (65%), Gaps = 3/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L  V++P+ ++N  I  L+ +M E MY + GIGLAA Q+ V  R+VVIDL 
Sbjct: 5   PILKYPDPKLHTVAKPVSEVNDRIKKLVADMAETMYESRGIGLAATQVDVHERVVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R   +  INP IIT  D  + Y+EGCLS+P     V R+  +TV ++D +   Q +
Sbjct: 65  EE--RNQLITLINP-IITHKDGETTYEEGCLSVPGVYDTVTRAERVTVEFLDADGHAQKL 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHELDHL G +F+++LS LK++ I  KM K
Sbjct: 122 DADGLLAICIQHELDHLQGKVFVEYLSPLKQNRIKTKMKK 161


>gi|237746966|ref|ZP_04577446.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
 gi|229378317|gb|EEO28408.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
          Length = 183

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 111/164 (67%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L + SRP+   +S++  L++NM + MY   G+GLAA Q+    ++VV
Sbjct: 1   MARLPILRYPDPRLLKPSRPVTSFDSELKTLVENMAQTMYEAPGVGLAAPQVNAHRQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+II  S++ ++++EGCLS+P    +++R A +TVR  D + +
Sbjct: 61  IDVSEK--RNELHVFINPQIIKASEEKTLFEEGCLSLPGIYDEIERPARVTVRAQDVDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K
Sbjct: 119 AFEMEAEGLLAVCVQHEIDHLKGRVFVDYLSPMKRNRIKKKLLK 162


>gi|241766760|ref|ZP_04764590.1| peptide deformylase [Acidovorax delafieldii 2AN]
 gi|241362866|gb|EER58605.1| peptide deformylase [Acidovorax delafieldii 2AN]
          Length = 169

 Score =  147 bits (372), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 110/166 (66%), Gaps = 4/166 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P++ +++ I  L+ +ML  MY   GIGLAA Q+ V  R+VVID+ 
Sbjct: 5   PILCYPDPRLHKVAQPVQAVDARIEALVADMLATMYDAHGIGLAATQVDVHERVVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P+V INP+I+  S +  V  EGCLS+P     V+R+A + VR +D   + + I
Sbjct: 65  EE--RNEPLVLINPEIVWASAERHVGDEGCLSVPGIYDGVERAAAVHVRALDAQGKSRTI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  Q RD
Sbjct: 123 EAEGLLAVCMQHEMDHLMGKVFVEYLSPLKRNRIKTKLLK--QQRD 166


>gi|301155307|emb|CBW14773.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
          Length = 169

 Score =  147 bits (372), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ V  P+ ++N DI  ++D+M + MY  +GIGLAA Q+ +L R++ ID++ 
Sbjct: 6   VLIYPDDHLKVVCEPVVEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N +V INP+I+    +  + +EGCLSIP +RA V R   +TV+ +D + +   + 
Sbjct: 65  -GDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K
Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 161


>gi|297180810|gb|ADI17016.1| N-formylmethionyl-tRNA deformylase [uncultured Vibrionales
           bacterium HF0010_22E23]
          Length = 170

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E +  +I  ++D+MLE MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDERLRTVAKPVESVTPEIQKIVDDMLETMYEENGIGLAATQVDIHQRIVVIDVSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  +A V R+A +TV+ +D +       
Sbjct: 66  T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGSQALVPRAAEVTVKALDRDGNEYQFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+
Sbjct: 123 ADDLLAICVQHELDHLMGKLFVDYLSPLKRQRIKQKLEKI 162


>gi|114561212|ref|YP_748725.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
 gi|114332505|gb|ABI69887.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
          Length = 188

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 102/160 (63%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+      +   IDNMLE MY   GIGLAA Q+    +L+V+DLQD   
Sbjct: 27  FPDERLRTIAQPVTDFGPQLQTQIDNMLETMYLEKGIGLAATQVDFHQQLIVMDLQDEVE 86

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P +FINP+I+  S D +  +EGCLS+P   A V R+ F+T++ +D + +  I+ AD 
Sbjct: 87  R--PTIFINPQIVASSGDLA-NEEGCLSVPGIYAKVDRAEFVTLKALDRHGKEFIVEADE 143

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           L A C+QHE+DHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 144 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARL 183


>gi|311696635|gb|ADP99508.1| peptide deformylase [marine bacterium HP15]
          Length = 167

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP LR +++P+E++      LID+M E MY   GIGLAA Q+ V  +++V+DL +   
Sbjct: 8   YPDPRLRTIAKPVEEVTDADRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVMDLSED-- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP++     +    QEGCLS+P +  DV+R     +R MD + +   + A G
Sbjct: 66  KSEPRVFINPEVEVLDGEREAMQEGCLSVPGFYEDVERIEHCMIRAMDRDGKPFELEAKG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHLNG LF+D+LS LKR+ I KK+ K
Sbjct: 126 LLAVCIQHEMDHLNGRLFVDYLSSLKRNRIRKKLEK 161


>gi|148259426|ref|YP_001233553.1| peptide deformylase [Acidiphilium cryptum JF-5]
 gi|146401107|gb|ABQ29634.1| peptide deformylase [Acidiphilium cryptum JF-5]
          Length = 188

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 2/160 (1%)

Query: 6   LVIFPDPILR-RVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           ++I PD  LR +  R +     D+  L+  M   MY   GIGLAA QIGV  RLVV+DL 
Sbjct: 18  ILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDLA 77

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               +K PMV INP+I   S++    +EGCLS+P   A+V R   I+V + D + + + I
Sbjct: 78  PD-DQKQPMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRTI 136

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K
Sbjct: 137 DADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAK 176


>gi|308188323|ref|YP_003932454.1| peptide deformylase [Pantoea vagans C9-1]
 gi|308058833|gb|ADO11005.1| peptide deformylase [Pantoea vagans C9-1]
          Length = 170

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 109/159 (68%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR+V+ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +V INP+++  S +  + +EGCLSIP+ RA V R+  + VR +D + +   + A  
Sbjct: 67  REERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDRDGKSFELEASE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LFID+LS LKR  I  K+ KL +
Sbjct: 126 LLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLAR 164


>gi|323496960|ref|ZP_08101988.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
 gi|323318034|gb|EGA71017.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
          Length = 173

 Score =  147 bits (371), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E++  +I   +D+M+E MY  +GIGLAA Q+    R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ ++ + +     
Sbjct: 66  T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGEEYTFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|257456003|ref|ZP_05621212.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
 gi|257446592|gb|EEV21626.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
          Length = 176

 Score =  147 bits (371), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 108/170 (63%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +PDP LR +++P+   + ++  LID+M E MY+  GIGLAA Q+    +LVV
Sbjct: 1   MTLRTILNYPDPRLRTLAKPVTHFDDELKTLIDDMFETMYAAKGIGLAATQVDEHIQLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP +   +D+   Y+EGCLS+P+Y   V R   + +  +D    
Sbjct: 61  MDLSEDGSQ--PRVFINPIVTPLADELYSYEEGCLSVPEYYDKVDRPKHVKIEALDAQGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +  A GLLA C+QHE+DHLNG +F+D+LS+LK+D    K+ K+V+ R+
Sbjct: 119 PFVEEAQGLLAVCIQHEIDHLNGKIFVDYLSKLKQDRARDKVRKVVKQRE 168


>gi|254229999|ref|ZP_04923400.1| peptide deformylase [Vibrio sp. Ex25]
 gi|269966999|ref|ZP_06181069.1| peptide deformylase [Vibrio alginolyticus 40B]
 gi|151937501|gb|EDN56358.1| peptide deformylase [Vibrio sp. Ex25]
 gi|269828393|gb|EEZ82657.1| peptide deformylase [Vibrio alginolyticus 40B]
          Length = 203

 Score =  147 bits (371), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 108/160 (67%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 37  VLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDISE 96

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +     
Sbjct: 97  T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEFTFE 153

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 154 ADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 193


>gi|254507283|ref|ZP_05119419.1| peptide deformylase [Vibrio parahaemolyticus 16]
 gi|219549743|gb|EED26732.1| peptide deformylase [Vibrio parahaemolyticus 16]
          Length = 172

 Score =  147 bits (371), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ ++ + +     
Sbjct: 66  T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGEEYTFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|157148861|ref|YP_001456180.1| peptide deformylase [Citrobacter koseri ATCC BAA-895]
 gi|166198515|sp|A8AQI1|DEF_CITK8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157086066|gb|ABV15744.1| hypothetical protein CKO_04699 [Citrobacter koseri ATCC BAA-895]
          Length = 169

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 113/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKSFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|326402652|ref|YP_004282733.1| peptide deformylase [Acidiphilium multivorum AIU301]
 gi|325049513|dbj|BAJ79851.1| peptide deformylase [Acidiphilium multivorum AIU301]
          Length = 185

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 2/160 (1%)

Query: 6   LVIFPDPILR-RVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           ++I PD  LR +  R +     D+  L+  M   MY   GIGLAA QIGV  RLVV+DL 
Sbjct: 15  ILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDLA 74

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               +K PMV INP+I   S++    +EGCLS+P   A+V R   I+V + D + + + I
Sbjct: 75  PD-DQKQPMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRTI 133

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K
Sbjct: 134 DADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAK 173


>gi|332991529|gb|AEF01584.1| peptide deformylase [Alteromonas sp. SN2]
          Length = 169

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++P+E++N DI  L+ +M E M   +GIGLAA Q+    ++VV+++ +   
Sbjct: 9   FPDERLRTVAKPVEEVNDDIKQLVSDMFETMKDENGIGLAATQVDRHVQVVVMNVAED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+I T  D  ++ +EGCLS+P   A V+R+  ITV+ ++ N +   + ADG
Sbjct: 67  QDEPRVFINPEI-TKKDGSTISEEGCLSVPGNYAKVERAEEITVKALNENGEAFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 126 LLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165


>gi|146329347|ref|YP_001209086.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
 gi|158513298|sp|A5EWL8|DEF_DICNV RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146232817|gb|ABQ13795.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
          Length = 181

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 9/168 (5%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I PDP LR  ++P+   +  +  ++ NM E MY   GIGLAA Q+ +  RL+V+D+  
Sbjct: 6   ILIHPDPRLRLPAQPVTHFDDALAEIVQNMYETMYHFHGIGLAAPQVNIQQRLIVMDVPQ 65

Query: 66  HAHRK---------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +  +         + +V +NP+I+  S++   Y+EGCLS+P+  A V R A ITVRY D
Sbjct: 66  RSAEEGEKAEQIPSDKLVLVNPEIVQRSEECQDYEEGCLSLPNQYALVTRPANITVRYQD 125

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                Q   A GLL+ C+QHE+DHLNG LFIDHLSRLKR+ + KK++K
Sbjct: 126 ITGATQERAAQGLLSVCIQHEIDHLNGGLFIDHLSRLKRERLEKKLAK 173


>gi|239904668|ref|YP_002951406.1| peptide deformylase [Desulfovibrio magneticus RS-1]
 gi|239794531|dbj|BAH73520.1| peptide deformylase [Desulfovibrio magneticus RS-1]
          Length = 174

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 101/165 (61%), Gaps = 3/165 (1%)

Query: 5   PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL I  +P P+L + + P+ +I   I  L   M E MY+  GIGLAA Q+G   RL+VID
Sbjct: 2   PLEILKYPHPVLAKKAEPVAEITDAIRELAAGMAEAMYANQGIGLAAPQVGASIRLIVID 61

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           L     R+  M  +NP +IT +      +EGCLS+  YR  V+R+A +TV  +D   Q  
Sbjct: 62  LSGPDKREALMTLVNP-VITAASGEQEDEEGCLSVRSYRTKVRRAANVTVTALDLAGQPL 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            I AD LLA CLQHE+DHL+G+LFID +SRLKR M  K++ +  Q
Sbjct: 121 TIEADELLAVCLQHEVDHLDGVLFIDRISRLKRAMYDKRVKRWAQ 165


>gi|83594679|ref|YP_428431.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
 gi|83577593|gb|ABC24144.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
          Length = 172

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 108/161 (67%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PDP L + + P+E ++  I  L+D+MLE MY   GIGLAA Q+GVL R++V+D  
Sbjct: 5   PILTAPDPRLTKKALPVETVDVSIRKLMDDMLETMYLAPGIGLAAPQVGVLKRVIVLDPA 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  PM   NP+II  S+D   Y+EGCLS+P+    V R   + VRY+D + + + I
Sbjct: 65  REDEAPRPMRLANPEIIWSSEDTKPYEEGCLSVPEQYDTVVRPDRVRVRYLDPDNEIREI 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            ADGLLA  LQHE+DHL+GILF+D+LS LKR+M+ +K+ K+
Sbjct: 125 DADGLLAVILQHEIDHLDGILFVDYLSSLKRNMMLRKLRKM 165


>gi|28899816|ref|NP_799421.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837667|ref|ZP_01990334.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
 gi|260362018|ref|ZP_05775023.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|260876495|ref|ZP_05888850.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|260897448|ref|ZP_05905944.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|260901339|ref|ZP_05909734.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|31076643|sp|Q87KD5|DEF1_VIBPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|28808068|dbj|BAC61305.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748957|gb|EDM59784.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
 gi|308087895|gb|EFO37590.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|308090413|gb|EFO40108.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|308109891|gb|EFO47431.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|308114143|gb|EFO51683.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|328471167|gb|EGF42069.1| peptide deformylase [Vibrio parahaemolyticus 10329]
          Length = 172

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 108/160 (67%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P++ +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVDAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +     
Sbjct: 66  T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEFTFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|264680865|ref|YP_003280775.1| peptide deformylase [Comamonas testosteroni CNB-2]
 gi|262211381|gb|ACY35479.1| peptide deformylase [Comamonas testosteroni CNB-2]
          Length = 170

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 107/160 (66%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++VID+ 
Sbjct: 5   PILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  PM  INP+I+  S++  + +EGCLS+P     V+RS  + V+ +D N   + I
Sbjct: 65  EK--RNEPMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDENGNSREI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K
Sbjct: 123 DAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVK 162


>gi|300721398|ref|YP_003710669.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
 gi|297627886|emb|CBJ88432.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
          Length = 170

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 112/161 (69%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR +++P+EK++++I  +ID+M E MY+ +GIGLAA Q+ +  R+VVID+ +   
Sbjct: 9   YPDERLRTIAKPVEKVDAEIQRIIDDMFETMYAEEGIGLAATQVDIHQRIVVIDVSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           RK  +V INP+++  S +  + +EGCLS+P+ R  V R   I ++ +D + Q   + ADG
Sbjct: 67  RKQLLVLINPELLNESGETGI-EEGCLSVPEQRGFVPRFEQIKIKALDYHGQPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +LR
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKIDRLR 166


>gi|330447316|ref|ZP_08310966.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491507|dbj|GAA05463.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 169

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VVID  +
Sbjct: 6   VLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVVIDTSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I     +  + +EGCLS+P  RA V R+A ++V  +D N       
Sbjct: 66  T--RDQPMVLINPEITEKRGEDGI-EEGCLSVPGARALVPRAAEVSVTALDRNGDTICFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+
Sbjct: 123 ADELLAICIQHELDHLAGKLFVDYLSPLKRQRIKQKLEKI 162


>gi|332289299|ref|YP_004420151.1| peptide deformylase [Gallibacterium anatis UMN179]
 gi|330432195|gb|AEC17254.1| peptide deformylase [Gallibacterium anatis UMN179]
          Length = 171

 Score =  147 bits (370), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 105/159 (66%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V+ P+EK++ +I   IDNM E MY  +GIGLAA Q+    R++ ID++ 
Sbjct: 6   VLCFPDERLRTVAAPVEKVDDEIREFIDNMFETMYQQEGIGLAATQVNRHQRIITIDVE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + N +V INP+I+  SD  +  +EGCLS+P +R  V R   +TV+ +D N +   + 
Sbjct: 65  -GDKSNQLVLINPEIVE-SDGETGIEEGCLSVPGFRGLVPRKEKVTVKALDRNGEPFTLE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A  LLA C+QHE+DHLNG++F+D+LS LKR+ I  K+ K
Sbjct: 123 ASDLLAICIQHEIDHLNGVMFVDYLSPLKRNRIKDKLVK 161


>gi|94499926|ref|ZP_01306462.1| peptide deformylase [Oceanobacter sp. RED65]
 gi|94428127|gb|EAT13101.1| peptide deformylase [Oceanobacter sp. RED65]
          Length = 171

 Score =  147 bits (370), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 98/156 (62%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+E++      LID+M E MY   GIGLAA Q+ V  +++V+D+ +   
Sbjct: 9   FPDTRLRTIAKPVEEVTDAHRKLIDDMFETMYDCPGIGLAATQVNVHEQIIVMDISED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINPK+     +    QEGCLS+P +  DV+R     +  +D N Q   + A G
Sbjct: 67  RSEPHVFINPKVTVLDGEPEKMQEGCLSVPGFYEDVERIEHCKIEALDRNGQPYELEARG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHLNG LF+D+LS  KRD I KK+ K
Sbjct: 127 LLAVCIQHEMDHLNGKLFVDYLSTTKRDRIRKKLEK 162


>gi|206889750|ref|YP_002248176.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|238058215|sp|B5YIL7|DEF_THEYD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|206741688|gb|ACI20745.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 165

 Score =  147 bits (370), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD +L++ +  I +IN D+  LIDNM+E MY+ +GIGLAA Q+GVL RL+V+D      
Sbjct: 9   YPDEVLKKKAETISEINGDLQKLIDNMIETMYNANGIGLAAPQVGVLKRLIVVDTSPREQ 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            ++ +V INP+ IT S+   + +EGCLS+P +   +KR   + V+ +D N +   I A G
Sbjct: 69  NQSLIVLINPE-ITDSEGEILSEEGCLSLPGFTTRLKRKERVIVKGLDRNGKEIEIEATG 127

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           LLA  LQHE+DHL+GIL ID +S LKR++  KK
Sbjct: 128 LLARALQHEIDHLDGILLIDKISPLKRELFRKK 160


>gi|304399256|ref|ZP_07381122.1| peptide deformylase [Pantoea sp. aB]
 gi|304353182|gb|EFM17563.1| peptide deformylase [Pantoea sp. aB]
          Length = 170

 Score =  146 bits (369), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 108/159 (67%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR+V+ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +V INP+++  S +  + +EGCLSIP+ RA V R+  + VR +D +     + A  
Sbjct: 67  REERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDRDGNSFELEASE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LFID+LS LKR  I  K+ KL +
Sbjct: 126 LLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLAR 164


>gi|93004869|ref|YP_579306.1| peptide deformylase [Psychrobacter cryohalolentis K5]
 gi|123386822|sp|Q1QET1|DEF_PSYCK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|92392547|gb|ABE73822.1| peptide deformylase [Psychrobacter cryohalolentis K5]
          Length = 184

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 110/166 (66%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP LR ++ P++++ ++I  LI +M+E MY   GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSYPDPRLRTIATPVKEVTAEIKTLITDMIETMYDAQGIGLAASQVDHHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   + +P VFINPK+    ++   Y+EGCLS+PD    V+R   + +  +D N      
Sbjct: 65  ED--KDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEALDENGNKIDE 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +GLLA C+QHE+DHLNG++F+D+LSRLK+     K+ K++++R+
Sbjct: 123 EVEGLLAVCIQHEMDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168


>gi|281306913|pdb|2W3T|A Chain A, Chloro Complex Of The Ni-Form Of E.Coli Deformylase
 gi|281306914|pdb|2W3U|A Chain A, Formate Complex Of The Ni-Form Of E.Coli Deformylase
          Length = 188

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 8   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 66  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 125 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165


>gi|317486329|ref|ZP_07945159.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6]
 gi|316922399|gb|EFV43655.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6]
          Length = 172

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 101/160 (63%), Gaps = 1/160 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+P+L + S PI ++  +I  L + M E MY +DGIG+AA Q+G L RLV+ID+  
Sbjct: 5   IVTYPNPLLGKPSLPITEVTDEIRKLAEEMTEAMYKSDGIGIAAPQVGQLIRLVIIDVTG 64

Query: 66  HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              R+  MV +NP      D  +   +EGCLS+PDYR+ V+R+A + V   D +      
Sbjct: 65  PEKREGKMVLVNPVWTPLPDAGYVESEEGCLSVPDYRSKVRRTARVHVEATDLDGNPVSF 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            AD +LA C+QHE+DHL+G LFID +SRLKR M   K+ K
Sbjct: 125 DADDILAICVQHEIDHLDGKLFIDRISRLKRIMFENKLKK 164


>gi|71905663|ref|YP_283250.1| peptide deformylase [Dechloromonas aromatica RCB]
 gi|71845284|gb|AAZ44780.1| peptide deformylase [Dechloromonas aromatica RCB]
          Length = 167

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 103/160 (64%), Gaps = 3/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP L++V+ P+ K++  I  L+ +M E MY   GIGLAA Q+ V  R+VVID+ 
Sbjct: 5   PILRFPDPRLKKVALPVAKVDDSIRKLVADMAETMYEAPGIGLAATQVDVHKRVVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +     FINP +++  +     +EGCLS+P     V+R+  + V Y+D +   Q +
Sbjct: 65  ED--KSELQAFINP-VLSRCEGSQTGEEGCLSVPGIYDKVERAESVVVTYLDLDGNQQTL 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA CLQHELDHLNG +F+DHLS LK+  I  K++K
Sbjct: 122 AADGLLAVCLQHELDHLNGTVFVDHLSLLKQTRIRNKLAK 161


>gi|4699740|pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|4699741|pdb|1ICJ|B Chain B, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|4699742|pdb|1ICJ|C Chain C, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|5821888|pdb|1BS4|A Chain A, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821889|pdb|1BS4|B Chain B, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821890|pdb|1BS4|C Chain C, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821891|pdb|1BS5|A Chain A, Peptide Deformylase As Zn2+ Containing Form
 gi|5821892|pdb|1BS5|B Chain B, Peptide Deformylase As Zn2+ Containing Form
 gi|5821893|pdb|1BS5|C Chain C, Peptide Deformylase As Zn2+ Containing Form
 gi|5821894|pdb|1BS6|A Chain A, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821895|pdb|1BS6|B Chain B, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821896|pdb|1BS6|C Chain C, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821900|pdb|1BS7|A Chain A, Peptide Deformylase As Ni2+ Containing Form
 gi|5821901|pdb|1BS7|B Chain B, Peptide Deformylase As Ni2+ Containing Form
 gi|5821902|pdb|1BS7|C Chain C, Peptide Deformylase As Ni2+ Containing Form
 gi|5821903|pdb|1BS8|A Chain A, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821904|pdb|1BS8|B Chain B, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821905|pdb|1BS8|C Chain C, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821915|pdb|1BSZ|A Chain A, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821916|pdb|1BSZ|B Chain B, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821917|pdb|1BSZ|C Chain C, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|7767088|pdb|1BSJ|A Chain A, Cobalt Deformylase Inhibitor Complex From E.Coli
 gi|7767089|pdb|1BSK|A Chain A, Zinc Deformylase Inhibitor Complex From E.Coli
 gi|16975207|pdb|1G27|A Chain A, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975208|pdb|1G27|B Chain B, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975209|pdb|1G27|C Chain C, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975210|pdb|1G2A|A Chain A, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|16975211|pdb|1G2A|B Chain B, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|16975212|pdb|1G2A|C Chain C, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|22219291|pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|22219292|pdb|1LRU|B Chain B, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|22219293|pdb|1LRU|C Chain C, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|62738424|pdb|1XEM|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
           Zinc- Peptide Deformylase Bound To Formate
 gi|62738425|pdb|1XEN|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
           Iron- Peptide Deformylase Bound To Formate
 gi|62738426|pdb|1XEO|A Chain A, High Resolution Crystals Structure Of Cobalt- Peptide
           Deformylase Bound To Formate
 gi|75766233|pdb|2AI8|A Chain A, E.Coli Polypeptide Deformylase Complexed With Sb-485343
 gi|75766234|pdb|2AI8|B Chain B, E.Coli Polypeptide Deformylase Complexed With Sb-485343
 gi|75766235|pdb|2AI8|C Chain C, E.Coli Polypeptide Deformylase Complexed With Sb-485343
          Length = 168

 Score =  146 bits (369), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 8   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 66  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 125 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165


>gi|254447455|ref|ZP_05060921.1| peptide deformylase [gamma proteobacterium HTCC5015]
 gi|198262798|gb|EDY87077.1| peptide deformylase [gamma proteobacterium HTCC5015]
          Length = 169

 Score =  146 bits (369), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 107/158 (67%), Gaps = 3/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR+  +P+E+++ ++   ID+M E MY   GIGLAA+Q+    RL++
Sbjct: 1   MAKLEILHFPDPRLRQACKPVEQVDDELRQFIDDMFETMYDAPGIGLAAIQVNRHERLLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ + A   NP+VFINP+II  +D   V QEGCLS+P +  +V+R+  I V+ +D + +
Sbjct: 61  TDVSEDA--SNPLVFINPEIIE-ADGVEVTQEGCLSVPGFYENVERAEHIVVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              +  DGL A C+QHE+DHL+G LF+D+LS LKR+ I
Sbjct: 118 AFEMACDGLQAVCVQHEIDHLDGKLFVDYLSPLKRNRI 155


>gi|113968375|ref|YP_732168.1| peptide deformylase [Shewanella sp. MR-4]
 gi|114045540|ref|YP_736090.1| peptide deformylase [Shewanella sp. MR-7]
 gi|117918494|ref|YP_867686.1| peptide deformylase [Shewanella sp. ANA-3]
 gi|113883059|gb|ABI37111.1| peptide deformylase [Shewanella sp. MR-4]
 gi|113886982|gb|ABI41033.1| peptide deformylase [Shewanella sp. MR-7]
 gi|117610826|gb|ABK46280.1| peptide deformylase [Shewanella sp. ANA-3]
          Length = 168

 Score =  146 bits (369), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  + P+ +  +++   ID+M E MY   GIGLAA Q+    +L+V+DLQD   
Sbjct: 9   FPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVD 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP+II  S DF   +EGCLS+P   A V R+ F+TV+ +D +     + AD 
Sbjct: 69  R--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEFTVEADE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           L A C+QHE+DHL G LF+D+LS LKR  I +K+ K
Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEK 161


>gi|15803814|ref|NP_289848.1| peptide deformylase [Escherichia coli O157:H7 EDL933]
 gi|15833406|ref|NP_312179.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai]
 gi|16131166|ref|NP_417745.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655]
 gi|26249871|ref|NP_755911.1| peptide deformylase [Escherichia coli CFT073]
 gi|82545649|ref|YP_409596.1| peptide deformylase [Shigella boydii Sb227]
 gi|82778584|ref|YP_404933.1| peptide deformylase [Shigella dysenteriae Sd197]
 gi|89110724|ref|AP_004504.1| peptide deformylase [Escherichia coli str. K-12 substr. W3110]
 gi|91212713|ref|YP_542699.1| peptide deformylase [Escherichia coli UTI89]
 gi|110643525|ref|YP_671255.1| peptide deformylase [Escherichia coli 536]
 gi|117625569|ref|YP_858892.1| peptide deformylase [Escherichia coli APEC O1]
 gi|157156138|ref|YP_001464754.1| peptide deformylase [Escherichia coli E24377A]
 gi|157162760|ref|YP_001460078.1| peptide deformylase [Escherichia coli HS]
 gi|168752265|ref|ZP_02777287.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113]
 gi|168758514|ref|ZP_02783521.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401]
 gi|168764969|ref|ZP_02789976.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501]
 gi|168769148|ref|ZP_02794155.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486]
 gi|168777856|ref|ZP_02802863.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196]
 gi|168783853|ref|ZP_02808860.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076]
 gi|168786176|ref|ZP_02811183.1| peptide deformylase [Escherichia coli O157:H7 str. EC869]
 gi|170018478|ref|YP_001723432.1| peptide deformylase [Escherichia coli ATCC 8739]
 gi|170082807|ref|YP_001732127.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170769511|ref|ZP_02903964.1| peptide deformylase [Escherichia albertii TW07627]
 gi|191169294|ref|ZP_03031043.1| peptide deformylase [Escherichia coli B7A]
 gi|191174456|ref|ZP_03035957.1| peptide deformylase [Escherichia coli F11]
 gi|193066484|ref|ZP_03047528.1| peptide deformylase [Escherichia coli E22]
 gi|193071544|ref|ZP_03052453.1| peptide deformylase [Escherichia coli E110019]
 gi|194430283|ref|ZP_03062778.1| peptide deformylase [Escherichia coli B171]
 gi|194435085|ref|ZP_03067323.1| peptide deformylase [Shigella dysenteriae 1012]
 gi|194439997|ref|ZP_03072055.1| peptide deformylase [Escherichia coli 101-1]
 gi|195939834|ref|ZP_03085216.1| peptide deformylase [Escherichia coli O157:H7 str. EC4024]
 gi|208806494|ref|ZP_03248831.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206]
 gi|208814593|ref|ZP_03255922.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045]
 gi|208821413|ref|ZP_03261733.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042]
 gi|209400361|ref|YP_002272743.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115]
 gi|209920752|ref|YP_002294836.1| peptide deformylase [Escherichia coli SE11]
 gi|215488586|ref|YP_002331017.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69]
 gi|217325115|ref|ZP_03441199.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588]
 gi|218550562|ref|YP_002384353.1| peptide deformylase [Escherichia fergusonii ATCC 35469]
 gi|218555844|ref|YP_002388757.1| peptide deformylase [Escherichia coli IAI1]
 gi|218560348|ref|YP_002393261.1| peptide deformylase [Escherichia coli S88]
 gi|218691573|ref|YP_002399785.1| peptide deformylase [Escherichia coli ED1a]
 gi|218696979|ref|YP_002404646.1| peptide deformylase [Escherichia coli 55989]
 gi|218706894|ref|YP_002414413.1| peptide deformylase [Escherichia coli UMN026]
 gi|227883418|ref|ZP_04001223.1| peptide deformylase [Escherichia coli 83972]
 gi|237703016|ref|ZP_04533497.1| peptide deformylase [Escherichia sp. 3_2_53FAA]
 gi|238902377|ref|YP_002928173.1| peptide deformylase [Escherichia coli BW2952]
 gi|253771890|ref|YP_003034721.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254038447|ref|ZP_04872503.1| peptide deformylase [Escherichia sp. 1_1_43]
 gi|254163214|ref|YP_003046322.1| peptide deformylase [Escherichia coli B str. REL606]
 gi|254795223|ref|YP_003080060.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359]
 gi|256020645|ref|ZP_05434510.1| peptide deformylase [Shigella sp. D9]
 gi|256025986|ref|ZP_05439851.1| peptide deformylase [Escherichia sp. 4_1_40B]
 gi|260846084|ref|YP_003223862.1| peptide deformylase [Escherichia coli O103:H2 str. 12009]
 gi|261224591|ref|ZP_05938872.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254515|ref|ZP_05947048.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK966]
 gi|293406884|ref|ZP_06650808.1| peptide deformylase [Escherichia coli FVEC1412]
 gi|293412705|ref|ZP_06655373.1| peptide deformylase [Escherichia coli B354]
 gi|293416705|ref|ZP_06659342.1| peptide deformylase [Escherichia coli B185]
 gi|293453605|ref|ZP_06664024.1| peptide deformylase [Escherichia coli B088]
 gi|297517904|ref|ZP_06936290.1| peptide deformylase [Escherichia coli OP50]
 gi|298382625|ref|ZP_06992220.1| def [Escherichia coli FVEC1302]
 gi|300815503|ref|ZP_07095728.1| peptide deformylase [Escherichia coli MS 107-1]
 gi|300896634|ref|ZP_07115151.1| peptide deformylase [Escherichia coli MS 198-1]
 gi|300903535|ref|ZP_07121457.1| peptide deformylase [Escherichia coli MS 84-1]
 gi|300918261|ref|ZP_07134865.1| peptide deformylase [Escherichia coli MS 115-1]
 gi|300921905|ref|ZP_07138060.1| peptide deformylase [Escherichia coli MS 182-1]
 gi|300932179|ref|ZP_07147459.1| peptide deformylase [Escherichia coli MS 187-1]
 gi|300973966|ref|ZP_07172373.1| peptide deformylase [Escherichia coli MS 200-1]
 gi|300979823|ref|ZP_07174725.1| peptide deformylase [Escherichia coli MS 45-1]
 gi|301018856|ref|ZP_07183095.1| peptide deformylase [Escherichia coli MS 69-1]
 gi|301021204|ref|ZP_07185238.1| peptide deformylase [Escherichia coli MS 196-1]
 gi|301046057|ref|ZP_07193236.1| peptide deformylase [Escherichia coli MS 185-1]
 gi|301305496|ref|ZP_07211588.1| peptide deformylase [Escherichia coli MS 124-1]
 gi|301325148|ref|ZP_07218680.1| peptide deformylase [Escherichia coli MS 78-1]
 gi|301643894|ref|ZP_07243924.1| peptide deformylase [Escherichia coli MS 146-1]
 gi|306816371|ref|ZP_07450509.1| peptide deformylase [Escherichia coli NC101]
 gi|307139969|ref|ZP_07499325.1| peptide deformylase [Escherichia coli H736]
 gi|307315135|ref|ZP_07594718.1| peptide deformylase [Escherichia coli W]
 gi|309794562|ref|ZP_07688984.1| peptide deformylase [Escherichia coli MS 145-7]
 gi|312968388|ref|ZP_07782598.1| peptide deformylase [Escherichia coli 2362-75]
 gi|312972452|ref|ZP_07786626.1| peptide deformylase [Escherichia coli 1827-70]
 gi|331643982|ref|ZP_08345111.1| peptide deformylase [Escherichia coli H736]
 gi|331649083|ref|ZP_08350169.1| peptide deformylase [Escherichia coli M605]
 gi|331654879|ref|ZP_08355878.1| peptide deformylase [Escherichia coli M718]
 gi|331659577|ref|ZP_08360515.1| peptide deformylase [Escherichia coli TA206]
 gi|331664899|ref|ZP_08365800.1| peptide deformylase [Escherichia coli TA143]
 gi|331670116|ref|ZP_08370955.1| peptide deformylase [Escherichia coli TA271]
 gi|331679355|ref|ZP_08380025.1| peptide deformylase [Escherichia coli H591]
 gi|332281841|ref|ZP_08394254.1| peptide deformylase [Shigella sp. D9]
 gi|62288071|sp|P0A6K3|DEF_ECOLI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62288072|sp|P0A6K4|DEF_ECOL6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62288073|sp|P0A6K5|DEF_ECO57 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122990717|sp|Q1R646|DEF_ECOUT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123048786|sp|Q0TCH5|DEF_ECOL5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123728325|sp|Q31VZ0|DEF_SHIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123769545|sp|Q32B63|DEF_SHIDS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512616|sp|A1AGH8|DEF_ECOK1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167012062|sp|A8A591|DEF_ECOHS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083070|sp|B1IQ13|DEF_ECOLC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229487486|sp|B1X6D9|DEF_ECODH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238058209|sp|B6I200|DEF_ECOSE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238058220|sp|B5YT06|DEF_ECO5E RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767581|sp|B7UK10|DEF_ECO27 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767582|sp|B7MCQ2|DEF_ECO45 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767583|sp|B7LHY3|DEF_ECO55 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767585|sp|B7N171|DEF_ECO81 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767586|sp|B7M0Z2|DEF_ECO8A RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767587|sp|B7NDQ8|DEF_ECOLU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767589|sp|B7LRQ3|DEF_ESCF3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|259645179|sp|C4ZUE1|DEF_ECOBW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|266618787|pdb|3K6L|A Chain A, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|266618788|pdb|3K6L|B Chain B, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|266618789|pdb|3K6L|C Chain C, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|12517916|gb|AAG58408.1|AE005556_1 peptide deformylase [Escherichia coli O157:H7 str. EDL933]
 gi|26110299|gb|AAN82485.1|AE016767_245 Peptide deformylase [Escherichia coli CFT073]
 gi|41474|emb|CAA45206.1| fms [Escherichia coli K-12]
 gi|443989|emb|CAA54367.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli K-12]
 gi|471304|emb|CAA54826.1| deformylase [Escherichia coli]
 gi|606221|gb|AAA58084.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|1789682|gb|AAC76312.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655]
 gi|13363625|dbj|BAB37575.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai]
 gi|81242732|gb|ABB63442.1| peptide deformylase [Shigella dysenteriae Sd197]
 gi|81247060|gb|ABB67768.1| peptide deformylase [Shigella boydii Sb227]
 gi|85676755|dbj|BAE78005.1| peptide deformylase [Escherichia coli str. K12 substr. W3110]
 gi|91074287|gb|ABE09168.1| peptide deformylase [Escherichia coli UTI89]
 gi|110345117|gb|ABG71354.1| peptide deformylase [Escherichia coli 536]
 gi|115514693|gb|ABJ02768.1| peptide deformylase [Escherichia coli APEC O1]
 gi|157068440|gb|ABV07695.1| peptide deformylase [Escherichia coli HS]
 gi|157078168|gb|ABV17876.1| peptide deformylase [Escherichia coli E24377A]
 gi|169753406|gb|ACA76105.1| peptide deformylase [Escherichia coli ATCC 8739]
 gi|169890642|gb|ACB04349.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170121568|gb|EDS90499.1| peptide deformylase [Escherichia albertii TW07627]
 gi|187766994|gb|EDU30838.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196]
 gi|188013857|gb|EDU51979.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113]
 gi|188998869|gb|EDU67855.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076]
 gi|189354695|gb|EDU73114.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401]
 gi|189361833|gb|EDU80252.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486]
 gi|189365123|gb|EDU83539.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501]
 gi|189374112|gb|EDU92528.1| peptide deformylase [Escherichia coli O157:H7 str. EC869]
 gi|190900649|gb|EDV60449.1| peptide deformylase [Escherichia coli B7A]
 gi|190905264|gb|EDV64902.1| peptide deformylase [Escherichia coli F11]
 gi|192925865|gb|EDV80515.1| peptide deformylase [Escherichia coli E22]
 gi|192955132|gb|EDV85626.1| peptide deformylase [Escherichia coli E110019]
 gi|194411672|gb|EDX27999.1| peptide deformylase [Escherichia coli B171]
 gi|194416692|gb|EDX32823.1| peptide deformylase [Shigella dysenteriae 1012]
 gi|194421049|gb|EDX37078.1| peptide deformylase [Escherichia coli 101-1]
 gi|208726295|gb|EDZ75896.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206]
 gi|208735870|gb|EDZ84557.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045]
 gi|208741536|gb|EDZ89218.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042]
 gi|209161761|gb|ACI39194.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115]
 gi|209757358|gb|ACI76991.1| peptide deformylase [Escherichia coli]
 gi|209757360|gb|ACI76992.1| peptide deformylase [Escherichia coli]
 gi|209757362|gb|ACI76993.1| peptide deformylase [Escherichia coli]
 gi|209757366|gb|ACI76995.1| peptide deformylase [Escherichia coli]
 gi|209914011|dbj|BAG79085.1| polypeptide deformylase [Escherichia coli SE11]
 gi|215266658|emb|CAS11097.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69]
 gi|217321336|gb|EEC29760.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588]
 gi|218353711|emb|CAU99982.1| peptide deformylase [Escherichia coli 55989]
 gi|218358103|emb|CAQ90750.1| peptide deformylase [Escherichia fergusonii ATCC 35469]
 gi|218362612|emb|CAR00238.1| peptide deformylase [Escherichia coli IAI1]
 gi|218367117|emb|CAR04891.1| peptide deformylase [Escherichia coli S88]
 gi|218429137|emb|CAR10089.2| peptide deformylase [Escherichia coli ED1a]
 gi|218433991|emb|CAR14908.1| peptide deformylase [Escherichia coli UMN026]
 gi|222034995|emb|CAP77738.1| Peptide deformylase [Escherichia coli LF82]
 gi|226838953|gb|EEH70976.1| peptide deformylase [Escherichia sp. 1_1_43]
 gi|226902280|gb|EEH88539.1| peptide deformylase [Escherichia sp. 3_2_53FAA]
 gi|227839562|gb|EEJ50028.1| peptide deformylase [Escherichia coli 83972]
 gi|238861987|gb|ACR63985.1| peptide deformylase [Escherichia coli BW2952]
 gi|242378813|emb|CAQ33605.1| peptide deformylase [Escherichia coli BL21(DE3)]
 gi|253322934|gb|ACT27536.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975115|gb|ACT40786.1| peptide deformylase [Escherichia coli B str. REL606]
 gi|253979271|gb|ACT44941.1| peptide deformylase [Escherichia coli BL21(DE3)]
 gi|254594623|gb|ACT73984.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359]
 gi|257761231|dbj|BAI32728.1| peptide deformylase [Escherichia coli O103:H2 str. 12009]
 gi|260447695|gb|ACX38117.1| peptide deformylase [Escherichia coli DH1]
 gi|281180321|dbj|BAI56651.1| polypeptide deformylase [Escherichia coli SE15]
 gi|284923293|emb|CBG36387.1| polypeptide deformylase [Escherichia coli 042]
 gi|291321731|gb|EFE61162.1| peptide deformylase [Escherichia coli B088]
 gi|291425695|gb|EFE98729.1| peptide deformylase [Escherichia coli FVEC1412]
 gi|291431281|gb|EFF04266.1| peptide deformylase [Escherichia coli B185]
 gi|291468352|gb|EFF10845.1| peptide deformylase [Escherichia coli B354]
 gi|294491738|gb|ADE90494.1| peptide deformylase [Escherichia coli IHE3034]
 gi|298276461|gb|EFI17979.1| def [Escherichia coli FVEC1302]
 gi|299881612|gb|EFI89823.1| peptide deformylase [Escherichia coli MS 196-1]
 gi|300301942|gb|EFJ58327.1| peptide deformylase [Escherichia coli MS 185-1]
 gi|300308976|gb|EFJ63496.1| peptide deformylase [Escherichia coli MS 200-1]
 gi|300359511|gb|EFJ75381.1| peptide deformylase [Escherichia coli MS 198-1]
 gi|300399513|gb|EFJ83051.1| peptide deformylase [Escherichia coli MS 69-1]
 gi|300404408|gb|EFJ87946.1| peptide deformylase [Escherichia coli MS 84-1]
 gi|300409429|gb|EFJ92967.1| peptide deformylase [Escherichia coli MS 45-1]
 gi|300414522|gb|EFJ97832.1| peptide deformylase [Escherichia coli MS 115-1]
 gi|300421706|gb|EFK05017.1| peptide deformylase [Escherichia coli MS 182-1]
 gi|300460063|gb|EFK23556.1| peptide deformylase [Escherichia coli MS 187-1]
 gi|300532395|gb|EFK53457.1| peptide deformylase [Escherichia coli MS 107-1]
 gi|300839191|gb|EFK66951.1| peptide deformylase [Escherichia coli MS 124-1]
 gi|300847980|gb|EFK75740.1| peptide deformylase [Escherichia coli MS 78-1]
 gi|301077737|gb|EFK92543.1| peptide deformylase [Escherichia coli MS 146-1]
 gi|305850767|gb|EFM51224.1| peptide deformylase [Escherichia coli NC101]
 gi|306905484|gb|EFN36019.1| peptide deformylase [Escherichia coli W]
 gi|307555374|gb|ADN48149.1| peptide deformylase [Escherichia coli ABU 83972]
 gi|307628321|gb|ADN72625.1| peptide deformylase [Escherichia coli UM146]
 gi|308121612|gb|EFO58874.1| peptide deformylase [Escherichia coli MS 145-7]
 gi|309703698|emb|CBJ03039.1| polypeptide deformylase [Escherichia coli ETEC H10407]
 gi|310334829|gb|EFQ01034.1| peptide deformylase [Escherichia coli 1827-70]
 gi|312287213|gb|EFR15123.1| peptide deformylase [Escherichia coli 2362-75]
 gi|312947837|gb|ADR28664.1| peptide deformylase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315062578|gb|ADT76905.1| peptide deformylase [Escherichia coli W]
 gi|315137862|dbj|BAJ45021.1| peptide deformylase [Escherichia coli DH1]
 gi|315255870|gb|EFU35838.1| peptide deformylase [Escherichia coli MS 85-1]
 gi|315284579|gb|EFU44024.1| peptide deformylase [Escherichia coli MS 110-3]
 gi|315292338|gb|EFU51690.1| peptide deformylase [Escherichia coli MS 153-1]
 gi|315297152|gb|EFU56432.1| peptide deformylase [Escherichia coli MS 16-3]
 gi|315617089|gb|EFU97699.1| peptide deformylase [Escherichia coli 3431]
 gi|320173931|gb|EFW49107.1| Peptide deformylase [Shigella dysenteriae CDC 74-1112]
 gi|320182716|gb|EFW57602.1| Peptide deformylase [Shigella boydii ATCC 9905]
 gi|320187008|gb|EFW61720.1| Peptide deformylase [Shigella flexneri CDC 796-83]
 gi|320191679|gb|EFW66329.1| Peptide deformylase [Escherichia coli O157:H7 str. EC1212]
 gi|320195378|gb|EFW70005.1| Peptide deformylase [Escherichia coli WV_060327]
 gi|320199474|gb|EFW74064.1| Peptide deformylase [Escherichia coli EC4100B]
 gi|320639591|gb|EFX09185.1| peptide deformylase [Escherichia coli O157:H7 str. G5101]
 gi|320645089|gb|EFX14105.1| peptide deformylase [Escherichia coli O157:H- str. 493-89]
 gi|320650400|gb|EFX18866.1| peptide deformylase [Escherichia coli O157:H- str. H 2687]
 gi|320655925|gb|EFX23845.1| peptide deformylase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320666399|gb|EFX33382.1| peptide deformylase [Escherichia coli O157:H7 str. LSU-61]
 gi|323162965|gb|EFZ48800.1| peptide deformylase [Escherichia coli E128010]
 gi|323182765|gb|EFZ68166.1| peptide deformylase [Escherichia coli 1357]
 gi|323189108|gb|EFZ74392.1| peptide deformylase [Escherichia coli RN587/1]
 gi|323376835|gb|ADX49103.1| peptide deformylase [Escherichia coli KO11]
 gi|323934515|gb|EGB30923.1| peptide deformylase [Escherichia coli E1520]
 gi|323939292|gb|EGB35504.1| peptide deformylase [Escherichia coli E482]
 gi|323944293|gb|EGB40369.1| peptide deformylase [Escherichia coli H120]
 gi|323950200|gb|EGB46082.1| peptide deformylase [Escherichia coli H252]
 gi|323954591|gb|EGB50374.1| peptide deformylase [Escherichia coli H263]
 gi|323966248|gb|EGB61683.1| peptide deformylase [Escherichia coli M863]
 gi|323970090|gb|EGB65364.1| peptide deformylase [Escherichia coli TA007]
 gi|323974761|gb|EGB69874.1| peptide deformylase [Escherichia coli TW10509]
 gi|324009052|gb|EGB78271.1| peptide deformylase [Escherichia coli MS 57-2]
 gi|324014963|gb|EGB84182.1| peptide deformylase [Escherichia coli MS 60-1]
 gi|324111965|gb|EGC05944.1| peptide deformylase [Escherichia fergusonii B253]
 gi|324116324|gb|EGC10244.1| peptide deformylase [Escherichia coli E1167]
 gi|326342535|gb|EGD66309.1| Peptide deformylase [Escherichia coli O157:H7 str. 1044]
 gi|326344522|gb|EGD68271.1| Peptide deformylase [Escherichia coli O157:H7 str. 1125]
 gi|327250935|gb|EGE62628.1| peptide deformylase [Escherichia coli STEC_7v]
 gi|330909331|gb|EGH37845.1| peptide deformylase [Escherichia coli AA86]
 gi|331036276|gb|EGI08502.1| peptide deformylase [Escherichia coli H736]
 gi|331041581|gb|EGI13725.1| peptide deformylase [Escherichia coli M605]
 gi|331046894|gb|EGI18972.1| peptide deformylase [Escherichia coli M718]
 gi|331052792|gb|EGI24825.1| peptide deformylase [Escherichia coli TA206]
 gi|331057409|gb|EGI29395.1| peptide deformylase [Escherichia coli TA143]
 gi|331062178|gb|EGI34098.1| peptide deformylase [Escherichia coli TA271]
 gi|331072527|gb|EGI43852.1| peptide deformylase [Escherichia coli H591]
 gi|332085435|gb|EGI90601.1| peptide deformylase [Shigella boydii 5216-82]
 gi|332086260|gb|EGI91416.1| peptide deformylase [Shigella dysenteriae 155-74]
 gi|332090315|gb|EGI95413.1| peptide deformylase [Shigella boydii 3594-74]
 gi|332104193|gb|EGJ07539.1| peptide deformylase [Shigella sp. D9]
 gi|332345234|gb|AEE58568.1| peptide deformylase [Escherichia coli UMNK88]
          Length = 169

 Score =  146 bits (369), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|161506040|ref|YP_001573152.1| peptide deformylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189083077|sp|A9MN80|DEF_SALAR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|160867387|gb|ABX24010.1| hypothetical protein SARI_04221 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 169

 Score =  146 bits (369), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +     + ADG
Sbjct: 67  RNERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|91205375|ref|YP_537730.1| peptide deformylase [Rickettsia bellii RML369-C]
 gi|91068919|gb|ABE04641.1| Polypeptide deformylase [Rickettsia bellii RML369-C]
          Length = 175

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 110/166 (66%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S+ + ++N+ I   +D+M+E MY  DG GLAAVQ+GVL R++VID++
Sbjct: 5   PIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMVIDIK 64

Query: 65  DHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   K P  F     +NP+II  S++  +  EGC+S+P+ R ++ RS  I +RY+D + 
Sbjct: 65  DHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYLDYHN 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q + A+  LA  +QHE DHL G L ID+LS +KRD+  +K+ KL
Sbjct: 125 KPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRDIALRKLRKL 170


>gi|16272565|ref|NP_438782.1| peptide deformylase [Haemophilus influenzae Rd KW20]
 gi|260581531|ref|ZP_05849338.1| peptide deformylase [Haemophilus influenzae RdAW]
 gi|1169264|sp|P44786|DEF_HAEIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1573618|gb|AAC22282.1| polypeptide deformylase (def) [Haemophilus influenzae Rd KW20]
 gi|260091805|gb|EEW75761.1| peptide deformylase [Haemophilus influenzae RdAW]
          Length = 169

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 107/159 (67%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ V  P+ K+N  I  ++D+M + MY   GIGLAA Q+ +L R++ ID++ 
Sbjct: 6   VLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +   + 
Sbjct: 65  -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K
Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161


>gi|261250604|ref|ZP_05943179.1| peptide deformylase [Vibrio orientalis CIP 102891]
 gi|260939173|gb|EEX95160.1| peptide deformylase [Vibrio orientalis CIP 102891]
          Length = 172

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ ++ + +     
Sbjct: 66  T--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALNRDGEEFTFE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|293393278|ref|ZP_06637592.1| peptide deformylase [Serratia odorifera DSM 4582]
 gi|291424188|gb|EFE97403.1| peptide deformylase [Serratia odorifera DSM 4582]
          Length = 169

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR+V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRKVAAPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N     + AD 
Sbjct: 67  RDQRLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDYNGNSFELAADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L+
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKLQ 166


>gi|323173923|gb|EFZ59551.1| peptide deformylase [Escherichia coli LT-68]
 gi|325498855|gb|EGC96714.1| hypothetical protein ECD227_2952 [Escherichia fergusonii ECD227]
          Length = 164

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 4   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 61

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 62  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 120

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 121 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161


>gi|71064611|ref|YP_263338.1| peptide deformylase [Psychrobacter arcticus 273-4]
 gi|123734488|sp|Q4FVQ4|DEF_PSYA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71037596|gb|AAZ17904.1| peptide deformylase [Psychrobacter arcticus 273-4]
          Length = 184

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 111/166 (66%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP LR ++ P++++ ++I  LI +M+E MY  +GIGLAA Q+    +L+V+DL 
Sbjct: 5   PILSYPDPRLRMIATPVKEVTAEIKTLITDMIETMYDAEGIGLAASQVDHHIQLIVMDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   + +P VFINPK+    ++   Y+EGCLS+PD    V+R   + +  +D N      
Sbjct: 65  ED--KDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEAIDQNGNAIDE 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +GLLA C+QHE+DHLNG++F+D+LSRLK+     K+ K++++R+
Sbjct: 123 EVEGLLAVCIQHEIDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168


>gi|329890845|ref|ZP_08269188.1| peptide deformylase [Brevundimonas diminuta ATCC 11568]
 gi|328846146|gb|EGF95710.1| peptide deformylase [Brevundimonas diminuta ATCC 11568]
          Length = 190

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/172 (45%), Positives = 105/172 (61%), Gaps = 16/172 (9%)

Query: 13  ILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA---- 67
           IL+ V+ P+E   +D +  L+D+MLE MY   GIGLAA QIG L R+VV+DL D      
Sbjct: 17  ILKTVAAPVEGGVTDAVRALMDDMLETMYDAPGIGLAAPQIGELTRVVVMDLGDKPVEGA 76

Query: 68  -----------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                       R+NP  F+NP+I+  S++   Y+EGCLS+P Y   V+R A + VRYM+
Sbjct: 77  SDEPQTEEEALERRNPRFFVNPEILWSSEEMFSYEEGCLSVPTYYDSVERPARVRVRYMN 136

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +      +GL A C QHELDHLNG+LFIDHLSRL+RD    K+ K  ++
Sbjct: 137 YQGETIEEEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRAVSKVKKHARM 188


>gi|258545465|ref|ZP_05705699.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
 gi|258519298|gb|EEV88157.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
          Length = 184

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 104/172 (60%), Gaps = 15/172 (8%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I PD  LR+ + P+ +  + +  + DNM   MY   GIGLAA Q+ +  R+VV+D+ +
Sbjct: 6   ILIHPDRRLRKTAEPVSQFTNALKTITDNMFATMYEAHGIGLAATQVNIHQRIVVMDVPE 65

Query: 66  H-------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                          H K  +V INP+II  S++ + +QEGCLS+P   ADV+R A I  
Sbjct: 66  RREDDETETPDAPIPHTK--LVLINPEIIATSEETASWQEGCLSLPGQFADVERPAKIRY 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Y D         A+GLL  C+QHE+DHLNG+LFIDHLSRLKR+ + KK++K
Sbjct: 124 AYYDLGGSRCEGEAEGLLGVCIQHEIDHLNGVLFIDHLSRLKRERLEKKLAK 175


>gi|237728621|ref|ZP_04559102.1| peptide deformylase [Citrobacter sp. 30_2]
 gi|283835704|ref|ZP_06355445.1| hypothetical protein CIT292_10096 [Citrobacter youngae ATCC 29220]
 gi|226909243|gb|EEH95161.1| peptide deformylase [Citrobacter sp. 30_2]
 gi|291068383|gb|EFE06492.1| peptide deformylase [Citrobacter youngae ATCC 29220]
          Length = 169

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++   D  +  +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  RDEQLVLINPELLE-KDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKSFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|322831106|ref|YP_004211133.1| peptide deformylase [Rahnella sp. Y9602]
 gi|321166307|gb|ADW72006.1| peptide deformylase [Rahnella sp. Y9602]
          Length = 170

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   FPDERLRITAKPVKEVNAEIQQIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIPD RA V R+  + +R +D + +   + AD 
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPDQRALVPRAEKVKIRALDRDGKTFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +KM K+ +L
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKMAKL 165


>gi|16766695|ref|NP_462310.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415326|ref|YP_152401.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62181912|ref|YP_218329.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161616432|ref|YP_001590397.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167554203|ref|ZP_02347944.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167995181|ref|ZP_02576271.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168239761|ref|ZP_02664819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245233|ref|ZP_02670165.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264713|ref|ZP_02686686.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168468037|ref|ZP_02701874.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168823236|ref|ZP_02835236.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194444564|ref|YP_002042658.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194451296|ref|YP_002047431.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194734454|ref|YP_002116350.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197248664|ref|YP_002148327.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197265509|ref|ZP_03165583.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364256|ref|YP_002143893.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198245506|ref|YP_002217370.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200388386|ref|ZP_03214998.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205354966|ref|YP_002228767.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858648|ref|YP_002245299.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913879|ref|ZP_04657716.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|23396546|sp|Q8ZLM7|DEF_SALTY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|75505525|sp|Q57J64|DEF_SALCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81677960|sp|Q5PIT8|DEF_SALPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083078|sp|A9N8B1|DEF_SALPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690058|sp|B5F7R3|DEF_SALA4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690317|sp|B5FJI2|DEF_SALDC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690438|sp|B5R1E3|DEF_SALEP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690545|sp|B5RH49|DEF_SALG2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690672|sp|B4TJX7|DEF_SALHS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690738|sp|B5BGV3|DEF_SALPK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238693518|sp|B4SUQ8|DEF_SALNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238693718|sp|B4TXB0|DEF_SALSV RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|16421962|gb|AAL22269.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56129583|gb|AAV79089.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62129545|gb|AAX67248.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161365796|gb|ABX69564.1| hypothetical protein SPAB_04247 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403227|gb|ACF63449.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194409600|gb|ACF69819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194709956|gb|ACF89177.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195628902|gb|EDX48312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197095733|emb|CAR61303.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197212367|gb|ACH49764.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197243764|gb|EDY26384.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197287582|gb|EDY26974.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197940022|gb|ACH77355.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199605484|gb|EDZ04029.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205274747|emb|CAR39803.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205321541|gb|EDZ09380.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327093|gb|EDZ13857.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205336019|gb|EDZ22783.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340500|gb|EDZ27264.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205346889|gb|EDZ33520.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206710451|emb|CAR34809.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261248563|emb|CBG26401.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995615|gb|ACY90500.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159949|emb|CBW19468.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914429|dbj|BAJ38403.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087852|emb|CBY97615.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321226458|gb|EFX51508.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322615053|gb|EFY11977.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617340|gb|EFY14241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625562|gb|EFY22387.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626404|gb|EFY23213.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632084|gb|EFY28837.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635037|gb|EFY31760.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643262|gb|EFY39829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646654|gb|EFY43161.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650000|gb|EFY46419.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652717|gb|EFY49057.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659526|gb|EFY55770.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665532|gb|EFY61719.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322670426|gb|EFY66565.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322670499|gb|EFY66633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675075|gb|EFY71158.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681612|gb|EFY77641.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685956|gb|EFY81945.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322716398|gb|EFZ07969.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131764|gb|ADX19194.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195826|gb|EFZ80999.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323196418|gb|EFZ81569.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202703|gb|EFZ87742.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207308|gb|EFZ92258.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211256|gb|EFZ96101.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216035|gb|EGA00766.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223474|gb|EGA07802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226796|gb|EGA10986.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231842|gb|EGA15952.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323233205|gb|EGA17300.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237272|gb|EGA21337.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245507|gb|EGA29506.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249013|gb|EGA32935.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250636|gb|EGA34517.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256865|gb|EGA40579.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263014|gb|EGA46561.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266014|gb|EGA49509.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272771|gb|EGA56174.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625151|gb|EGE31496.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326630115|gb|EGE36458.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332990258|gb|AEF09241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 169

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +     + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|283852905|ref|ZP_06370166.1| peptide deformylase [Desulfovibrio sp. FW1012B]
 gi|283571734|gb|EFC19733.1| peptide deformylase [Desulfovibrio sp. FW1012B]
          Length = 175

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 100/159 (62%), Gaps = 1/159 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P P L + + P+ +I  +I  L   M E MY+  GIGLAA Q+G   RLVVIDL     
Sbjct: 8   YPHPTLAQKAAPVTEITPEIRELAAAMAETMYANQGIGLAAPQVGRSIRLVVIDLSGPDK 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  M  +NP +IT        +EGCLS+ DYR +V R+A +TV+  D +     + ADG
Sbjct: 68  REGLMTLVNP-VITDPAGEEEDEEGCLSVRDYRTNVVRAATVTVKATDLDGNPFCLEADG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA CLQHE+DHL+G+LFIDH+SRLKR M  K++ +  +
Sbjct: 127 LLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWAR 165


>gi|320105840|ref|YP_004181430.1| peptide deformylase [Terriglobus saanensis SP1PR4]
 gi|319924361|gb|ADV81436.1| peptide deformylase [Terriglobus saanensis SP1PR4]
          Length = 169

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 103/162 (63%), Gaps = 1/162 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPDP+L +V+ P+   +  +  L+D+M   MY+ +GIGLAA QI +  R+ +IDL  
Sbjct: 5   IIKFPDPVLEKVAEPVTLFDDSLKKLVDDMFASMYAAEGIGLAAPQINISRRITIIDLSF 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               +  +V INP++I         +EGCLS+PD R  V R+A++ VR  D   +H  + 
Sbjct: 65  QKRPEEKIVLINPEVIAVEGK-QHEEEGCLSLPDIREKVTRAAWVKVRAQDATGKHFEVE 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              LLA   QHE+DHLNGILFI  +SRLKRD++++++ K+++
Sbjct: 124 GTELLARAFQHEIDHLNGILFISKISRLKRDLVSRRIRKMMK 165


>gi|329118894|ref|ZP_08247589.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464922|gb|EGF11212.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 167

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+EKI++ I  LI +M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   YPDERLHTVAKPVEKIDARIKTLIADMFETMYEARGIGLAATQVDVHERVVVMDLSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +IT  +  + Y+EGCLS+P     V R+  +TV  ++ N +   + ADG
Sbjct: 67  RNEPRVFINP-VITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALNENGEKFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIRTKLKK 161


>gi|320539229|ref|ZP_08038900.1| peptide deformylase [Serratia symbiotica str. Tucson]
 gi|320030867|gb|EFW12875.1| peptide deformylase [Serratia symbiotica str. Tucson]
          Length = 169

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 113/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR+++ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   FPDDRLRKIAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDISNN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLS+P+ RA V R+A + +R +D + +   + AD 
Sbjct: 67  RDQRLVLINPELLEKSGETGI-EEGCLSLPEQRALVPRAANVKIRALDFDGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|34580779|ref|ZP_00142259.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|28262164|gb|EAA25668.1| polypeptide deformylase [Rickettsia sibirica 246]
          Length = 176

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 108/166 (65%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++VID+Q
Sbjct: 6   PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIQ 65

Query: 65  DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   A  K+  P+  +NP+II  +++     EGC+S+P+ R +V R   I +RY+D + 
Sbjct: 66  DHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYLDYHG 125

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 126 KSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 171


>gi|259909966|ref|YP_002650322.1| peptide deformylase [Erwinia pyrifoliae Ep1/96]
 gi|224965588|emb|CAX57120.1| Peptide deformylase [Erwinia pyrifoliae Ep1/96]
 gi|283480066|emb|CAY75982.1| peptide deformylase [Erwinia pyrifoliae DSM 12163]
 gi|310765564|gb|ADP10514.1| peptide deformylase [Erwinia sp. Ejp617]
          Length = 169

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 110/157 (70%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   FPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +     + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNSVELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHL G LFID+LS +KR  I +K+ KL
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKL 162


>gi|300822910|ref|ZP_07103046.1| peptide deformylase [Escherichia coli MS 119-7]
 gi|300524676|gb|EFK45745.1| peptide deformylase [Escherichia coli MS 119-7]
          Length = 169

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKLKIRALDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|157828155|ref|YP_001494397.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238650436|ref|YP_002916288.1| peptide deformylase [Rickettsia peacockii str. Rustic]
 gi|157800636|gb|ABV75889.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238624534|gb|ACR47240.1| peptide deformylase [Rickettsia peacockii str. Rustic]
          Length = 175

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 108/166 (65%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++VID+Q
Sbjct: 5   PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIQ 64

Query: 65  DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   A  K+  P+  +NP+II  +++     EGC+S+P+ R +V R   I +RY+D + 
Sbjct: 65  DHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYLDYHG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 125 KSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|224585201|ref|YP_002639000.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469729|gb|ACN47559.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 164

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 4   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 61

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +     + ADG
Sbjct: 62  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEADG 120

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 121 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 160


>gi|321472939|gb|EFX83908.1| hypothetical protein DAPPUDRAFT_47755 [Daphnia pulex]
          Length = 166

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 5/154 (3%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           P P+L R S PI+ I++ I   +D+MLE MY++ GIGLAA+Q+G+L R++VIDL + +  
Sbjct: 10  PSPLLHRTSLPIKTIDATIHKALDDMLETMYASSGIGLAAIQVGLLKRMLVIDLGEASES 69

Query: 70  ----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+  SD+ + + EGCLS+P +  ++ R A I VRY D   ++  I+
Sbjct: 70  DTWAGKPLKIINPQILWTSDNQNTFNEGCLSVPQHYVEISRPAEIKVRYQDETGKYHEIH 129

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL-KRDMI 158
           A GLLATCLQHE+DHLNGI  ++   R+ +RD +
Sbjct: 130 AAGLLATCLQHEIDHLNGITILNPPIRISQRDFV 163


>gi|292489813|ref|YP_003532703.1| peptide deformylase [Erwinia amylovora CFBP1430]
 gi|292900855|ref|YP_003540224.1| polypeptide deformylase [Erwinia amylovora ATCC 49946]
 gi|291200703|emb|CBJ47836.1| polypeptide deformylase [Erwinia amylovora ATCC 49946]
 gi|291555250|emb|CBA23521.1| peptide deformylase [Erwinia amylovora CFBP1430]
 gi|312173996|emb|CBX82249.1| peptide deformylase [Erwinia amylovora ATCC BAA-2158]
          Length = 169

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 109/157 (69%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +     + ADG
Sbjct: 67  RDERLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNSFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHELDHL G LFID+LS +KR  I +K+ KL
Sbjct: 126 LLAICIQHELDHLVGKLFIDYLSPMKRQRIRQKLEKL 162


>gi|83941567|ref|ZP_00954029.1| peptide deformylase [Sulfitobacter sp. EE-36]
 gi|83847387|gb|EAP85262.1| peptide deformylase [Sulfitobacter sp. EE-36]
          Length = 153

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 97/143 (67%), Gaps = 1/143 (0%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHAHRKNPMVFINPKIIT 82
           +  ++ +L D+ML  MY   GIGLAA QIGV+ RL+V+D +++      P+V  NP+II 
Sbjct: 4   MTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGETPRPLVMFNPEIIA 63

Query: 83  FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            SD  + Y+EGCLSIP+  ADV R A + VR++D +   Q      L ATC+QHE+DHL+
Sbjct: 64  ASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDHLD 123

Query: 143 GILFIDHLSRLKRDMITKKMSKL 165
           G LFID+L  +KR MIT+KM+KL
Sbjct: 124 GKLFIDYLKPMKRQMITRKMTKL 146


>gi|157373176|ref|YP_001471776.1| peptide deformylase [Shewanella sediminis HAW-EB3]
 gi|157315550|gb|ABV34648.1| Peptide deformylase [Shewanella sediminis HAW-EB3]
          Length = 170

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 100/161 (62%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+ + N+D+   IDNM + MY   GIGLAA Q+     L+++DLQD   
Sbjct: 9   FPDERLRTIAKPVAEFNADLQAQIDNMFDTMYEEKGIGLAATQVDFHQHLIIMDLQDDVE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFIN +I T  D     +EGCLS+P   A+V R+  +T++  D       + ADG
Sbjct: 69  R--PTVFINMEI-TARDGSCTNEEGCLSVPGIYANVDRAESVTIKAFDREGVEFTLDADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           L A CLQHELDHLNG LF+D+LS LKR  I +K+ K  +L 
Sbjct: 126 LFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARLE 166


>gi|83855044|ref|ZP_00948574.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
 gi|83842887|gb|EAP82054.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
          Length = 153

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 97/143 (67%), Gaps = 1/143 (0%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHAHRKNPMVFINPKIIT 82
           +  ++ +L D+ML  MY   GIGLAA QIGV+ RL+V+D +++      P+V  NP+II 
Sbjct: 4   MTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGEAPRPLVMFNPEIIA 63

Query: 83  FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            SD  + Y+EGCLSIP+  ADV R A + VR++D +   Q      L ATC+QHE+DHL+
Sbjct: 64  ASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDHLD 123

Query: 143 GILFIDHLSRLKRDMITKKMSKL 165
           G LFID+L  +KR MIT+KM+KL
Sbjct: 124 GKLFIDYLKPMKRQMITRKMTKL 146


>gi|171057041|ref|YP_001789390.1| peptide deformylase [Leptothrix cholodnii SP-6]
 gi|170774486|gb|ACB32625.1| peptide deformylase [Leptothrix cholodnii SP-6]
          Length = 171

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +++RP+ +++  I  L+ +M E MY   GIGLAA Q+ V  R++VID+ 
Sbjct: 5   PILRYPDPRLNKIARPVIQVDERIRQLVSDMFETMYEARGIGLAATQVDVHERVIVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R +P+V INP+I+  S++  V  EGCLS+P     V+R A + V  +D N Q    
Sbjct: 65  EE--RNDPLVLINPRIVAASEEMMVGDEGCLSVPTIYDRVERHAQVQVEALDRNGQRYEF 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLL+ C+QHE+DHL G +F+++LS LKR+ I  KM K
Sbjct: 123 EADGLLSVCVQHEMDHLLGKVFVEYLSPLKRNRIRSKMIK 162


>gi|226329516|ref|ZP_03805034.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198]
 gi|225202702|gb|EEG85056.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198]
          Length = 174

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 110/160 (68%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   YPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVNIHQRIIVIDVSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  + D  + +EGCLSIP+ RA + R+  + VR +D N Q   + AD 
Sbjct: 67  RDERLVLINPELLDANGDTGI-EEGCLSIPEQRAFIPRAEHVKVRALDYNGQPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKL 165


>gi|187732040|ref|YP_001881970.1| peptide deformylase [Shigella boydii CDC 3083-94]
 gi|238689490|sp|B2U2Q4|DEF_SHIB3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|187429032|gb|ACD08306.1| peptide deformylase [Shigella boydii CDC 3083-94]
          Length = 169

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP  RA V R+  + +R +D + +   + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPKQRALVPRAEKVKIRALDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|165932853|ref|YP_001649642.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|165907940|gb|ABY72236.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
          Length = 175

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 108/166 (65%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++VID+Q
Sbjct: 5   PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIQ 64

Query: 65  DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   A  K+  P+  +NP++I  +++     EGC+S+P+ R +V R   I +RY+D + 
Sbjct: 65  DHDSVARPKDFYPLFIVNPEVIEKAEELVTANEGCISLPEQRIEVARPESIKIRYLDYHG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 125 KSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|157830814|pdb|1DFF|A Chain A, Peptide Deformylase
          Length = 164

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 113/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 8   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 66  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L
Sbjct: 125 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164


>gi|183600719|ref|ZP_02962212.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827]
 gi|188019699|gb|EDU57739.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827]
          Length = 174

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   YPDERLRTIAKPVEKVDAEIQQIVDDMFETMYEEEGIGLAATQVDIHQRIIVIDVSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+    V R+  + VR +D N     + ADG
Sbjct: 67  RDQRLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEHVKVRALDYNGDSFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL ++R
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRMR 166


>gi|157372744|ref|YP_001480733.1| peptide deformylase [Serratia proteamaculans 568]
 gi|167012065|sp|A8GKG5|DEF_SERP5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157324508|gb|ABV43605.1| peptide deformylase [Serratia proteamaculans 568]
          Length = 169

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 113/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+V+ P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   YPDDRLRKVAAPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+A + +R +D + +   + AD 
Sbjct: 67  RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAAAVKIRALDRDGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|223041757|ref|ZP_03611950.1| peptide deformylase [Actinobacillus minor 202]
 gi|240948040|ref|ZP_04752457.1| peptide deformylase [Actinobacillus minor NM305]
 gi|223017441|gb|EEF15859.1| peptide deformylase [Actinobacillus minor 202]
 gi|240297656|gb|EER48133.1| peptide deformylase [Actinobacillus minor NM305]
          Length = 170

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PD  L +V  P+  ++ ++   ID+M + MY  +GIGLAA Q+ VL R++ ID++ 
Sbjct: 6   VVLYPDENLAKVCEPVAVVDDELNRFIDDMFDTMYEHEGIGLAAPQVDVLKRVITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + N +V INP+II  S +  + +EGCLSIP +RA V R   + V+ ++   +  +  
Sbjct: 65  -GDKTNQVVLINPEIIESSGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRQGEEVVYD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGL A C+QHE+DHLNGILF+DHLS LKR  I +KM KL
Sbjct: 123 ADGLFAICIQHEIDHLNGILFVDHLSPLKRQRIKEKMVKL 162


>gi|56459130|ref|YP_154411.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
 gi|81678352|sp|Q5QXI5|DEF_IDILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56178140|gb|AAV80862.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
          Length = 174

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PD  LR+V++ IEK++ +I ++ID+M E MY   G+GLAA Q+ V  RL V
Sbjct: 1   MAKMTVLQYPDERLRKVAQKIEKVDDNIRSVIDDMFETMYEEQGVGLAATQVDVHRRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +  +   P+VFINP+I      F    EGCLS P   A V+R+  ITV  +D N +
Sbjct: 61  SDCSEDQN--EPLVFINPEITEAEGHFK-NDEGCLSFPGVYAKVERAERITVTALDKNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K  +L
Sbjct: 118 RFSRSAEGLLAICIQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRL 165


>gi|309785609|ref|ZP_07680240.1| peptide deformylase [Shigella dysenteriae 1617]
 gi|308926729|gb|EFP72205.1| peptide deformylase [Shigella dysenteriae 1617]
          Length = 169

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEGGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|24114564|ref|NP_709074.1| peptide deformylase [Shigella flexneri 2a str. 301]
 gi|30064608|ref|NP_838779.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
 gi|74313805|ref|YP_312224.1| peptide deformylase [Shigella sonnei Ss046]
 gi|110807134|ref|YP_690654.1| peptide deformylase [Shigella flexneri 5 str. 8401]
 gi|170680840|ref|YP_001745549.1| peptide deformylase [Escherichia coli SMS-3-5]
 gi|218702049|ref|YP_002409678.1| peptide deformylase [Escherichia coli IAI39]
 gi|260857407|ref|YP_003231298.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
 gi|260870029|ref|YP_003236431.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
 gi|300935284|ref|ZP_07150295.1| peptide deformylase [Escherichia coli MS 21-1]
 gi|331674794|ref|ZP_08375551.1| peptide deformylase [Escherichia coli TA280]
 gi|331684929|ref|ZP_08385515.1| peptide deformylase [Escherichia coli H299]
 gi|39930879|sp|Q83PZ1|DEF_SHIFL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122957164|sp|Q0T016|DEF_SHIF8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123773439|sp|Q3YWX3|DEF_SHISS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767584|sp|B7NLK6|DEF_ECO7I RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767588|sp|B1LGP3|DEF_ECOSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|24053759|gb|AAN44781.1| peptide deformylase [Shigella flexneri 2a str. 301]
 gi|30042867|gb|AAP18590.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
 gi|73857282|gb|AAZ89989.1| peptide deformylase [Shigella sonnei Ss046]
 gi|110616682|gb|ABF05349.1| peptide deformylase [Shigella flexneri 5 str. 8401]
 gi|170518558|gb|ACB16736.1| peptide deformylase [Escherichia coli SMS-3-5]
 gi|218372035|emb|CAR19895.1| peptide deformylase [Escherichia coli IAI39]
 gi|257756056|dbj|BAI27558.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
 gi|257766385|dbj|BAI37880.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
 gi|281602655|gb|ADA75639.1| putative N-formylmethionyl-tRNA deformylase [Shigella flexneri
           2002017]
 gi|300459487|gb|EFK22980.1| peptide deformylase [Escherichia coli MS 21-1]
 gi|323154124|gb|EFZ40327.1| peptide deformylase [Escherichia coli EPECa14]
 gi|323164851|gb|EFZ50642.1| peptide deformylase [Shigella sonnei 53G]
 gi|323179177|gb|EFZ64751.1| peptide deformylase [Escherichia coli 1180]
 gi|331067703|gb|EGI39101.1| peptide deformylase [Escherichia coli TA280]
 gi|331077300|gb|EGI48512.1| peptide deformylase [Escherichia coli H299]
 gi|332749605|gb|EGJ80022.1| peptide deformylase [Shigella flexneri K-671]
 gi|332753999|gb|EGJ84372.1| peptide deformylase [Shigella flexneri 2747-71]
 gi|332996761|gb|EGK16386.1| peptide deformylase [Shigella flexneri K-272]
 gi|332998313|gb|EGK17913.1| peptide deformylase [Shigella flexneri K-218]
 gi|333012534|gb|EGK31915.1| peptide deformylase [Shigella flexneri K-304]
 gi|333014514|gb|EGK33862.1| peptide deformylase [Shigella flexneri K-227]
          Length = 169

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + A+G
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|313648791|gb|EFS13231.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
 gi|332749748|gb|EGJ80163.1| peptide deformylase [Shigella flexneri 4343-70]
 gi|332766530|gb|EGJ96737.1| peptide deformylase [Shigella flexneri 2930-71]
 gi|332998300|gb|EGK17901.1| peptide deformylase [Shigella flexneri VA-6]
          Length = 164

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 4   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 61

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + A+G
Sbjct: 62  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAEG 120

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 121 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161


>gi|197287101|ref|YP_002152973.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227354903|ref|ZP_03839317.1| polypeptide deformylase [Proteus mirabilis ATCC 29906]
 gi|194684588|emb|CAR46445.1| polypeptide deformylase [Proteus mirabilis HI4320]
 gi|227164985|gb|EEI49824.1| polypeptide deformylase [Proteus mirabilis ATCC 29906]
          Length = 171

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   YPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVDIHQRIIVIDISET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++    D  + +EGCLSIP+ RA V R+  + VR +D N Q   + AD 
Sbjct: 67  RDQKLVLINPELLDQEGDTGI-EEGCLSIPEQRAFVPRAERVKVRALDYNGQPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKRR 166


>gi|38639603|ref|NP_943372.1| peptide deformylase [Klebsiella pneumoniae]
 gi|168998831|ref|YP_001688099.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044]
 gi|262040714|ref|ZP_06013948.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|38016701|gb|AAR07722.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae]
 gi|238549851|dbj|BAH66202.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259041938|gb|EEW42975.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 169

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 114/162 (70%), Gaps = 3/162 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R ++   +   + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALNRYGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+D
Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167


>gi|315635057|ref|ZP_07890338.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
 gi|315476319|gb|EFU67070.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
          Length = 170

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 109/160 (68%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+P+  L+ V  P+  +N D   +ID+M + MY  +GIGLAA Q+ +L R++ ID++ 
Sbjct: 6   VLIYPEEHLKVVCDPVLNVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N +V INP+I+    +  + +EGCLSIP +RA V R   +TV+ +D + +   + 
Sbjct: 65  -GDKQNQLVLINPEILDAEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRDGKEFTLK 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K+
Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLMKV 162


>gi|283788078|ref|YP_003367943.1| polypeptide deformylase [Citrobacter rodentium ICC168]
 gi|282951532|emb|CBG91231.1| polypeptide deformylase [Citrobacter rodentium ICC168]
          Length = 169

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++    +  + +EGCLSIP+ RA V R+  + +R +D   +   + ADG
Sbjct: 67  RDERLVLINPELLEKEGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|299531890|ref|ZP_07045290.1| peptide deformylase [Comamonas testosteroni S44]
 gi|298720065|gb|EFI61022.1| peptide deformylase [Comamonas testosteroni S44]
          Length = 170

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 107/160 (66%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++VID+ 
Sbjct: 5   PILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  PM  INP+I+  S++  + +EGCLS+P     V+RS  + V+ +D +   + I
Sbjct: 65  EK--RNEPMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDESGNSREI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K
Sbjct: 123 DAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVK 162


>gi|83404829|ref|YP_424843.1| peptide deformylase [Escherichia coli]
 gi|157149370|ref|YP_001451409.1| peptide deformylase [Escherichia coli E24377A]
 gi|298206469|ref|YP_003717571.1| peptide deformylase [Escherichia coli ETEC 1392/75]
 gi|83308554|emb|CAI79523.1| peptide deformylase [Escherichia coli]
 gi|157076537|gb|ABV16250.1| peptide deformylase [Escherichia coli E24377A]
 gi|297374341|emb|CBL93313.1| peptide deformylase [Escherichia coli ETEC 1392/75]
          Length = 169

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|145631964|ref|ZP_01787717.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
           R3021]
 gi|144982378|gb|EDJ89955.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
           R3021]
 gi|309973885|gb|ADO97086.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2846]
          Length = 169

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 107/159 (67%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ ID++ 
Sbjct: 6   VLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +   + 
Sbjct: 65  -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K
Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161


>gi|323959563|gb|EGB55216.1| peptide deformylase [Escherichia coli H489]
          Length = 169

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  + +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  RDERLVLINPELLEKNGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|68249189|ref|YP_248301.1| peptide deformylase [Haemophilus influenzae 86-028NP]
 gi|145629886|ref|ZP_01785678.1| peptide deformylase [Haemophilus influenzae 22.1-21]
 gi|145637962|ref|ZP_01793602.1| peptide deformylase [Haemophilus influenzae PittHH]
 gi|145639368|ref|ZP_01794973.1| peptide deformylase [Haemophilus influenzae PittII]
 gi|145642285|ref|ZP_01797850.1| peptide deformylase [Haemophilus influenzae R3021]
 gi|148826745|ref|YP_001291498.1| peptide deformylase [Haemophilus influenzae PittEE]
 gi|148827778|ref|YP_001292531.1| peptide deformylase [Haemophilus influenzae PittGG]
 gi|229846679|ref|ZP_04466787.1| peptide deformylase [Haemophilus influenzae 7P49H1]
 gi|81336405|sp|Q4QMV6|DEF_HAEI8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166198517|sp|A5UEB4|DEF_HAEIE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166198518|sp|A5UH92|DEF_HAEIG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|68057388|gb|AAX87641.1| peptide deformylase [Haemophilus influenzae 86-028NP]
 gi|144977740|gb|EDJ87687.1| peptide deformylase [Haemophilus influenzae 22.1-21]
 gi|145268853|gb|EDK08816.1| peptide deformylase [Haemophilus influenzae PittHH]
 gi|145271415|gb|EDK11327.1| peptide deformylase [Haemophilus influenzae PittII]
 gi|145273041|gb|EDK12922.1| peptide deformylase [Haemophilus influenzae 22.4-21]
 gi|148716905|gb|ABQ99115.1| peptide deformylase [Haemophilus influenzae PittEE]
 gi|148719020|gb|ABR00148.1| hypothetical protein CGSHiGG_06235 [Haemophilus influenzae PittGG]
 gi|229810772|gb|EEP46490.1| peptide deformylase [Haemophilus influenzae 7P49H1]
 gi|301169340|emb|CBW28939.1| peptide deformylase [Haemophilus influenzae 10810]
 gi|309751783|gb|ADO81767.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2866]
          Length = 169

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 107/159 (67%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ ID++ 
Sbjct: 6   VLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +   + 
Sbjct: 65  -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K
Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161


>gi|145633869|ref|ZP_01789590.1| peptide deformylase [Haemophilus influenzae 3655]
 gi|145635938|ref|ZP_01791624.1| peptide deformylase [Haemophilus influenzae PittAA]
 gi|229845579|ref|ZP_04465706.1| peptide deformylase [Haemophilus influenzae 6P18H1]
 gi|144985241|gb|EDJ92084.1| peptide deformylase [Haemophilus influenzae 3655]
 gi|145266797|gb|EDK06815.1| peptide deformylase [Haemophilus influenzae PittAA]
 gi|229811514|gb|EEP47216.1| peptide deformylase [Haemophilus influenzae 6P18H1]
          Length = 169

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 107/159 (67%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ ID++ 
Sbjct: 6   VLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +   + 
Sbjct: 65  -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K
Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161


>gi|198282168|ref|YP_002218489.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667290|ref|YP_002424533.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246689|gb|ACH82282.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519503|gb|ACK80089.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 167

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 3/162 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  L+ V+RPI +++  I  L D+M E MY   GIGLAA Q+   +RL+V+D+ ++  
Sbjct: 9   IPDARLKDVARPIARVDKQIQQLADDMAETMYDAPGIGLAAPQVAAGHRLIVVDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R + +  +NP+II  + +  + +EGCLS+P     V+R+  +TVR      +   + ADG
Sbjct: 67  RNDLLTLLNPEIIARTGEEEM-KEGCLSVPGVLETVRRAEKVTVRATTVQGKTVELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           LLA CLQHE+DHL+G LFIDHLSRLK+ +I +K  K V+L D
Sbjct: 126 LLAVCLQHEIDHLDGTLFIDHLSRLKQSLIRRKAEKRVRLGD 167


>gi|262040754|ref|ZP_06013985.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041898|gb|EEW42938.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 169

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +V INP+++   D  +  +EGCLSIP+ RA V R+  + +R +D N +   + ADG
Sbjct: 67  REEQLVLINPEMLE-KDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNDKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|88607030|ref|YP_505871.1| peptide deformylase [Anaplasma phagocytophilum HZ]
 gi|88598093|gb|ABD43563.1| peptide deformylase [Anaplasma phagocytophilum HZ]
          Length = 187

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/189 (42%), Positives = 110/189 (58%), Gaps = 24/189 (12%)

Query: 1   MVKKPLVIFPDPILRRVSRPI------EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54
           M  +PLV+ PD  L   S  +      EK NS    L+++M + MY+  GIGLAAVQ+GV
Sbjct: 1   MSVRPLVVLPDSRLFLCSEEVRETDFCEKFNS----LVEDMFDTMYAEQGIGLAAVQVGV 56

Query: 55  LYRLVVIDLQDHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDY 100
             R+ VIDL       +              PMV INP+I+  S D    +EGCLS+PD 
Sbjct: 57  HKRIFVIDLGPKTEESSEIADDPDGYHSTCGPMVVINPEIVEKSVDLVSMEEGCLSVPDQ 116

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           R  V R   I ++Y D + + +I+ A GLL+ CLQHE+DHLNG +F+ H+S+LKRD++ +
Sbjct: 117 RELVVRPERIVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNGTVFLKHISKLKRDLVMQ 176

Query: 161 KMSKLVQLR 169
           KM K   LR
Sbjct: 177 KMRKAASLR 185


>gi|319775435|ref|YP_004137923.1| peptide deformylase [Haemophilus influenzae F3047]
 gi|329122537|ref|ZP_08251120.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
 gi|317450026|emb|CBY86240.1| peptide deformylase [Haemophilus influenzae F3047]
 gi|327473142|gb|EGF18566.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
          Length = 169

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 107/159 (67%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ ID++ 
Sbjct: 6   VLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +   + 
Sbjct: 65  -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K
Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLK 161


>gi|311277759|ref|YP_003939990.1| peptide deformylase [Enterobacter cloacae SCF1]
 gi|308746954|gb|ADO46706.1| peptide deformylase [Enterobacter cloacae SCF1]
          Length = 169

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 112/161 (69%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V+ P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   IPDERLRKVAEPVQEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +V INP++I   D  +  +EGCLS+P+ RA V R+  + VR +D + +   + ADG
Sbjct: 67  REQQLVLINPELIE-KDGETGIEEGCLSVPEQRALVPRAETVKVRALDRDGKPFELNADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +++
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMK 166


>gi|251793801|ref|YP_003008533.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
 gi|247535200|gb|ACS98446.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
          Length = 170

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 112/165 (67%), Gaps = 3/165 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+P+  L+ +  P+ ++N D   +ID+M + MY  +GIGLAA Q+ +L R++ ID++ 
Sbjct: 6   VLIYPEDHLKVICDPVTEVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N +V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +   + 
Sbjct: 65  -GDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLK 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           AD LLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K+ + R+
Sbjct: 123 ADRLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKVKKQRE 167


>gi|270264340|ref|ZP_06192606.1| peptide deformylase [Serratia odorifera 4Rx13]
 gi|270041476|gb|EFA14574.1| peptide deformylase [Serratia odorifera 4Rx13]
          Length = 169

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+V+ P++++N+ I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   YPDERLRKVAAPVKEVNATIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+A + +R +D + +   + AD 
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAANVKIRALDRDGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 126 LLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|238021725|ref|ZP_04602151.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147]
 gi|237866339|gb|EEP67381.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147]
          Length = 167

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 104/160 (65%), Gaps = 3/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  P+  L  V++P+ +++  I  L+ +M E MY++ GIGLAA Q+ V  R+VVIDL 
Sbjct: 5   PILTHPNERLHIVAQPVAQVDERIRTLVQDMAETMYASKGIGLAATQVDVHERVVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +   +  INP +IT  D  + Y+EGCLS+P    +V R+  ITV ++D     Q +
Sbjct: 65  EE--KNQLLALINP-VITKKDGETTYEEGCLSVPGIYEEVTRAETITVEFLDIQGNKQTL 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHELDHLNG LF+++LS LK++ I  KM K
Sbjct: 122 DADGLLAICVQHELDHLNGKLFVEYLSPLKQNRIKTKMKK 161


>gi|254282388|ref|ZP_04957356.1| peptide deformylase [gamma proteobacterium NOR51-B]
 gi|219678591|gb|EED34940.1| peptide deformylase [gamma proteobacterium NOR51-B]
          Length = 168

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 98/160 (61%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR  ++P+ +++  I  LID+MLE MY   GIGLAA Q+ V  R++VID+ 
Sbjct: 5   PILEFPDPRLRTRAKPVTEVDQRIRRLIDDMLETMYDAPGIGLAASQVDVHERVIVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +  +R  P VFINP++         Y EGCLS+P +   V R + I V  +D        
Sbjct: 65  E--NRDEPRVFINPEVTVIDKTLGSYDEGCLSVPGFFETVNRPSSIEVTALDREGDTFAE 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             DGLLA CLQHE+DHL G LF+D+LS LKR  I  K+ K
Sbjct: 123 ELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRSKLEK 162


>gi|157826975|ref|YP_001496039.1| peptide deformylase [Rickettsia bellii OSU 85-389]
 gi|157802279|gb|ABV79002.1| peptide deformylase [Rickettsia bellii OSU 85-389]
          Length = 175

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 110/166 (66%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S+ + ++N+ I   +D+M+E MY  DG GLAAVQ+GVL R++VID++
Sbjct: 5   PIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMVIDIK 64

Query: 65  DHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   K P  F     +NP+II  S++  +  EGC+S+P+ R ++ RS  I +RY+D + 
Sbjct: 65  DHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYLDYHN 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q + A+  LA  +QHE DHL G L ID+LS +KR++  +K+ KL
Sbjct: 125 KPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRNIALRKLRKL 170


>gi|312882739|ref|ZP_07742474.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369597|gb|EFP97114.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 173

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 105/160 (65%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V+ P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVATPVENVTPEIQKFVDDMIETMYDEEGIGLAATQVDCHKRIVVIDVSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +     
Sbjct: 66  T--RDQPMVLINPEILDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEFTFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLTKI 162


>gi|229586451|ref|YP_002844952.1| peptide deformylase [Rickettsia africae ESF-5]
 gi|228021501|gb|ACP53209.1| Polypeptide deformylase [Rickettsia africae ESF-5]
          Length = 175

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 108/166 (65%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++VID+Q
Sbjct: 5   PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIQ 64

Query: 65  DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   A  K+  P+  +NP++I  +++     EGC+S+P+ R +V R   I +RY+D + 
Sbjct: 65  DHDSVARPKDFYPLFIVNPEMIEQAEELVTANEGCISLPEQRIEVARPESIKIRYLDYHG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 125 KSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|332533677|ref|ZP_08409536.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036841|gb|EGI73302.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 168

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 108/164 (65%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR V++ + +++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTVAKDVVQVDDTVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+II   D  +V +EGCLS+P+  A V R+  +TV  ++ N +
Sbjct: 61  IDVSEE--RNEPLVLINPQIIK-KDGSTVSEEGCLSVPNSYAKVDRAETVTVAALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K
Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEK 161


>gi|329114447|ref|ZP_08243209.1| Peptide deformylase [Acetobacter pomorum DM001]
 gi|326696523|gb|EGE48202.1| Peptide deformylase [Acetobacter pomorum DM001]
          Length = 275

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 111/163 (68%), Gaps = 4/163 (2%)

Query: 5   PLVIF--PDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           PL I   P P+LR+ +R ++  + +DI  ++ NM   MY   GIGLAA Q+G+  R +++
Sbjct: 109 PLQILTPPHPVLRQKARLVKPEDVADIRKILPNMFSAMYQAPGIGLAAPQVGLSQRFLLV 168

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +   R +P+V INP++I  ++D +V +EGCLS+P+  A+V R   I VR+ + N   
Sbjct: 169 DLGEKDAR-DPIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNINGDV 227

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K
Sbjct: 228 VEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAK 270


>gi|258541770|ref|YP_003187203.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632848|dbj|BAH98823.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635905|dbj|BAI01874.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256638960|dbj|BAI04922.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642014|dbj|BAI07969.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645069|dbj|BAI11017.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648124|dbj|BAI14065.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651177|dbj|BAI17111.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654168|dbj|BAI20095.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 186

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 111/163 (68%), Gaps = 4/163 (2%)

Query: 5   PLVIF--PDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           PL I   P P+LR+ +R ++  + ++I  ++ NM   MY   GIGLAA Q+G+  R +++
Sbjct: 20  PLQILTPPHPVLRQKARLVKPEDVAEIRKILPNMFSAMYQAPGIGLAAPQVGLSQRFILV 79

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +   R +P+V INP++I  ++D +V +EGCLS+P+  A+V R   I VR+ + N   
Sbjct: 80  DLGEKDAR-DPIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNVNGDV 138

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K
Sbjct: 139 VEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAK 181


>gi|117620047|ref|YP_854786.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561454|gb|ABK38402.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 170

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 109/159 (68%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V+ P+E    ++ +++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   FPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R++P+V INP+II  +    + +EGCLS+P  RA V R+ ++ VR +D + +   + AD 
Sbjct: 67  REDPLVLINPEIIEQAGSTGI-EEGCLSVPGSRALVPRAEWVKVRALDRHGKAFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAR 164


>gi|271502213|ref|YP_003335239.1| peptide deformylase [Dickeya dadantii Ech586]
 gi|270345768|gb|ACZ78533.1| peptide deformylase [Dickeya dadantii Ech586]
          Length = 169

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 108/159 (67%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRTQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S D  + +EGCLSIP+ RA V R+  + VR +D   +   + ADG
Sbjct: 67  RDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKPFELDADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAR 164


>gi|260599606|ref|YP_003212177.1| peptide deformylase [Cronobacter turicensis z3032]
 gi|260218783|emb|CBA34131.1| Peptide deformylase [Cronobacter turicensis z3032]
          Length = 177

 Score =  144 bits (364), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PD  LR V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ ++  R
Sbjct: 16  PDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSEN--R 73

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N +   + ADGL
Sbjct: 74  DERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRNGKSFELEADGL 132

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LA C+QHE+DHL G LFID+LS +KR  I +K+ KL +++
Sbjct: 133 LAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 172


>gi|291619142|ref|YP_003521884.1| Def [Pantoea ananatis LMG 20103]
 gi|291154172|gb|ADD78756.1| Def [Pantoea ananatis LMG 20103]
 gi|327395471|dbj|BAK12893.1| peptide deformylase Def [Pantoea ananatis AJ13355]
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 108/159 (67%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR+++ P++++N+D+  ++D+M E MYS +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   FPDERLRKIAAPVKEVNADVQRIVDDMFETMYSEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + VR +D   +   +    
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDREGKSFELETGD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL+G LFID+LS LKR  I  K+ KL +
Sbjct: 126 LLAICIQHEIDHLDGKLFIDYLSPLKRQRIKTKLEKLAR 164


>gi|289209433|ref|YP_003461499.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
 gi|288945064|gb|ADC72763.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
          Length = 177

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 107/164 (65%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ FPDP LR  + P+E ++ +I  L+D+MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAKREILHFPDPRLRLKAEPVETVDDEIRTLVDDMLETMYDAPGIGLAATQINVQKRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D   +  P V INP+I+  S +  +  EGCLS+P +   V+R+  I VR +  + +
Sbjct: 61  ADVSDD--QSEPHVLINPEILETSGEEEM-DEGCLSVPGFYEKVQRADRIRVRALGRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K
Sbjct: 118 PFELDIDGLLAVCIQHEIDHLDGKLFVDYLSSLKRNRIRKKLEK 161


>gi|242237892|ref|YP_002986073.1| peptide deformylase [Dickeya dadantii Ech703]
 gi|242129949|gb|ACS84251.1| peptide deformylase [Dickeya dadantii Ech703]
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 108/157 (68%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRITAKPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVNIHQRIIVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S D  + +EGCLSIP+ RA V R+  + +R +D + +   +  DG
Sbjct: 67  RDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAERVKIRALDKDGKPFELETDG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKL 162


>gi|37521797|ref|NP_925174.1| peptide deformylase [Gloeobacter violaceus PCC 7421]
 gi|39930959|sp|Q7NIF5|DEF2_GLOVI RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|35212795|dbj|BAC90169.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
          Length = 187

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 96/153 (62%), Gaps = 2/153 (1%)

Query: 1   MVKKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + K PL I    D +LR+ S+ I  IN ++  L   ML+ MYS DGIGLAA Q+GV  R+
Sbjct: 12  LAKPPLAIHTLGDRVLRQGSKQISGINDEVRKLAQQMLQTMYSADGIGLAAPQVGVNKRM 71

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+D+      + P+V INP I  FS D +V QEGCLS+P   ADV+R   +   Y D N
Sbjct: 72  IVVDIDPENAARPPLVLINPLIKQFSSDLAVDQEGCLSVPSIYADVRRPERVVATYRDLN 131

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +   + A GLLA C+QHE+DHL+G+LF+D + 
Sbjct: 132 GRPVTLEATGLLARCIQHEIDHLDGVLFVDRVE 164


>gi|330827125|ref|YP_004390428.1| peptide deformylase [Alicycliphilus denitrificans K601]
 gi|329312497|gb|AEB86912.1| Peptide deformylase [Alicycliphilus denitrificans K601]
          Length = 171

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 106/160 (66%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P+  ++  +  ++D+ML  MY  +GIGLAA Q+ V  R+VVID+ 
Sbjct: 5   PILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P+V INP+I   S +  + +EGCLS+P     V+RS  +  R +D + Q + I
Sbjct: 65  EE--RDQPLVLINPEITWASPEMRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQPRTI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K
Sbjct: 123 EAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLK 162


>gi|251788004|ref|YP_003002725.1| peptide deformylase [Dickeya zeae Ech1591]
 gi|247536625|gb|ACT05246.1| peptide deformylase [Dickeya zeae Ech1591]
          Length = 169

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 108/159 (67%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRIQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S D  + +EGCLSIP+ RA V R+  + VR +D   +   + ADG
Sbjct: 67  RDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +
Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLAR 164


>gi|168234463|ref|ZP_02659521.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194472649|ref|ZP_03078633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194459013|gb|EDX47852.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331619|gb|EDZ18383.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 169

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +     + A+G
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEANG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|149190435|ref|ZP_01868706.1| peptide deformylase [Vibrio shilonii AK1]
 gi|148835689|gb|EDL52655.1| peptide deformylase [Vibrio shilonii AK1]
          Length = 169

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 105/160 (65%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+    R+VVID+ D
Sbjct: 6   VLTFPDDRLRTVAKPVEAVTPEIQKVVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I     +  + +EGCLS+P  RA V R+A ++V+ ++ + +     
Sbjct: 66  T--RDQPMVLINPEITEKRGEDGI-EEGCLSVPGARALVPRAAEVSVKALNRDGEEFTFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K+ K+
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKDKLEKI 162


>gi|302341791|ref|YP_003806320.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
 gi|301638404|gb|ADK83726.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 1/153 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  +PDP+L      I++++ ++  L  +M++ MY   G+GLAA Q+G   R+VV+D  
Sbjct: 5   PICKYPDPVLAEKCAEIDRVDDELRRLAQDMIDTMYDAPGVGLAAPQVGRAIRMVVVDTA 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  PMV INP+++       V+ E CLS+PDYRADV R++ + V   D       I
Sbjct: 65  EDDKRGTPMVLINPRVVAKRGQL-VWDEACLSVPDYRADVVRASEVVVEAGDLEGNDLRI 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            A+GL A CLQHE+DHL+G+LF+DH+S LKR M
Sbjct: 124 EAEGLTAVCLQHEIDHLDGVLFLDHISSLKRAM 156


>gi|149910328|ref|ZP_01898971.1| peptide deformylase [Moritella sp. PE36]
 gi|149806576|gb|EDM66544.1| peptide deformylase [Moritella sp. PE36]
          Length = 167

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 107/159 (67%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  L+++++P+++I      +ID+MLE MY+ +GIGLAAVQ+ +L R+VVID+     
Sbjct: 9   FPDDRLKKIAQPVQEITPATQIIIDDMLETMYAEEGIGLAAVQVNILQRIVVIDVS--GT 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P++ INP ++T     +  +EGCLS+P+ RA V R+  +TV  +D +     + A  
Sbjct: 67  RGEPLILINP-VLTNKCGETGIEEGCLSVPESRAFVPRAESVTVTALDRDGNEFTLEAHD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA CLQHE+DHLNG LFID+LS LK+  I KK+ KL +
Sbjct: 126 LLAICLQHEVDHLNGKLFIDYLSPLKQQRIRKKLEKLAR 164


>gi|297183538|gb|ADI19667.1| N-formylmethionyl-tRNA deformylase [uncultured Alteromonadales
           bacterium HF4000_16C08]
          Length = 169

 Score =  144 bits (363), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV+D+ +   
Sbjct: 9   FPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVVMDVSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+I T  D  ++ +EGCLS+P   A V+R+  ITV+ ++   +   + A+G
Sbjct: 67  QNEPRVFINPEI-TRKDGSTISEEGCLSVPGNYAKVERAEAITVKALNEEGEAFELDAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 126 LLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKDARL 165


>gi|254497986|ref|ZP_05110749.1| peptide deformylase [Legionella drancourtii LLAP12]
 gi|254352763|gb|EET11535.1| peptide deformylase [Legionella drancourtii LLAP12]
          Length = 171

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 103/160 (64%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++  PDP LR +S+P+   +  +  LID+M E MY   G+GLAA QIGV  RL VID+  
Sbjct: 6   ILYLPDPRLRELSKPVVTFDDTLQTLIDDMFETMYDAHGVGLAAAQIGVSLRLSVIDIL- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +KN +V INP+II  S+  S + EGCLS+P     V R+  +TV+ +D + +   I 
Sbjct: 65  -GDKKNQIVIINPEIIA-SEGESKFDEGCLSVPGAYDTVTRAEKVTVKALDRHGKPFEIK 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A+GLLA CLQHE+DH+NG LFID LS LK+ M  KK+ K 
Sbjct: 123 AEGLLAECLQHEIDHMNGKLFIDMLSPLKKAMARKKLDKF 162


>gi|15892201|ref|NP_359915.1| peptide deformylase [Rickettsia conorii str. Malish 7]
 gi|20137640|sp|Q92IZ1|DEF1_RICCN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|15619334|gb|AAL02816.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
          Length = 175

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 108/166 (65%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++VID+Q
Sbjct: 5   PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIQ 64

Query: 65  DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   A  K+  P+  +NP+II  +++     EGC+S+P+ R +V R   I +RY+D + 
Sbjct: 65  DHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYLDYHG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + + + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 125 KSRELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|317049806|ref|YP_004117454.1| peptide deformylase [Pantoea sp. At-9b]
 gi|316951423|gb|ADU70898.1| peptide deformylase [Pantoea sp. At-9b]
          Length = 170

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 108/159 (67%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR+++ P++ +++ +  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDDRLRKIAAPVKTVDAGVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +V INP+++    +  + +EGCLSIP+ RA V R+ ++ VR  D +     +  DG
Sbjct: 67  REERLVLINPELLEKGGETGI-EEGCLSIPEQRAFVPRAEWVKVRAQDRDGNSFELETDG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL+G LFID+LS LKR  I +K+ KL +
Sbjct: 126 LLAICIQHEIDHLDGKLFIDYLSPLKRQRIKQKLEKLAR 164


>gi|78224529|ref|YP_386276.1| peptide deformylase [Geobacter metallireducens GS-15]
 gi|78195784|gb|ABB33551.1| peptide deformylase [Geobacter metallireducens GS-15]
          Length = 167

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 104/164 (63%), Gaps = 1/164 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +P+PIL++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VID+
Sbjct: 3   RTILTYPNPILKKKAVPVAVINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVIDV 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                R   +V INP +   ++  S  +EGCLS+P Y A+V R A + V+ ++ + +   
Sbjct: 63  SQREERPELIVCINP-VFVHTEGESYEEEGCLSVPKYSANVHRHAKVVVKALNLDGEEVT 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             A+GLLA   QHE+DHL G+LF+DHLS LKR+M  KK  ++V+
Sbjct: 122 YRAEGLLAIAFQHEIDHLEGMLFVDHLSPLKREMFKKKYRRMVE 165


>gi|57238784|ref|YP_179920.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden]
 gi|58578709|ref|YP_196921.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden]
 gi|58616771|ref|YP_195970.1| peptide deformylase [Ehrlichia ruminantium str. Gardel]
 gi|57160863|emb|CAH57765.1| putative peptide deformylase 1 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416383|emb|CAI27496.1| Peptide deformylase [Ehrlichia ruminantium str. Gardel]
 gi|58417335|emb|CAI26539.1| Peptide deformylase [Ehrlichia ruminantium str. Welgevonden]
          Length = 181

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 105/171 (61%), Gaps = 12/171 (7%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV----I 61
           LV  PD  L   S  + ++  +I  L+D+M EVM++ +GIGLAAVQ+G+  R+ V    +
Sbjct: 6   LVTIPDHRLSLCSEEVTEVTQEIKKLVDDMFEVMHTNNGIGLAAVQVGIHKRIFVADVPV 65

Query: 62  DLQDHAHRK--------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           D +DH   K         P   INPKI+  S +    QEGCLS+PD    V R  ++T++
Sbjct: 66  DYKDHETIKTDGYKSHGGPYCMINPKIVDMSQEKVKMQEGCLSVPDCLEYVMRPKYVTMQ 125

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Y+D N    II A G LA CL+HELDHLNGI+F+ +LS+ KRD+I +K+ K
Sbjct: 126 YLDYNGNKCIIKAQGWLARCLEHELDHLNGIVFLKYLSKFKRDLIVEKIRK 176


>gi|301064006|ref|ZP_07204471.1| peptide deformylase [delta proteobacterium NaphS2]
 gi|300441917|gb|EFK06217.1| peptide deformylase [delta proteobacterium NaphS2]
          Length = 171

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 96/144 (66%), Gaps = 1/144 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P+P+L++ + P++ I+ ++  +ID MLE MY+  GIGLAA Q+GVL R++V D      
Sbjct: 9   YPEPVLKKNAEPVKNIDEELQEIIDQMLETMYAAPGIGLAANQVGVLKRVIVFDGSPREE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
             NP + INP+I+        + E CLS+PD+ A+V R+A I V+ +D N +   + A  
Sbjct: 69  GANPQILINPEIVAAEGSIK-WDEACLSVPDFTAEVNRNANIQVKGLDRNGKPLELEAKD 127

Query: 129 LLATCLQHELDHLNGILFIDHLSR 152
           LLA CLQHE+DHL+GILFID +SR
Sbjct: 128 LLAVCLQHEIDHLDGILFIDRISR 151


>gi|121596335|ref|YP_988231.1| peptide deformylase [Acidovorax sp. JS42]
 gi|222112559|ref|YP_002554823.1| peptide deformylase [Acidovorax ebreus TPSY]
 gi|120608415|gb|ABM44155.1| peptide deformylase [Acidovorax sp. JS42]
 gi|221732003|gb|ACM34823.1| peptide deformylase [Acidovorax ebreus TPSY]
          Length = 170

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P+  ++  +  ++D+M   MY   GIGLAA Q+ V  R+VVID+ 
Sbjct: 5   PILCYPDPRLHKVAQPVTAVDERVRAIVDDMFATMYDAHGIGLAATQVDVHERIVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P+V INP+I   S +  V  EGCLS+P     V+RS  + VR +D + Q ++I
Sbjct: 65  EE--RDTPLVLINPEITWASAEKQVGDEGCLSVPGIYDGVERSTAVHVRALDRDGQPRVI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K
Sbjct: 123 EAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLK 162


>gi|294141147|ref|YP_003557125.1| polypeptide deformylase [Shewanella violacea DSS12]
 gi|293327616|dbj|BAJ02347.1| polypeptide deformylase [Shewanella violacea DSS12]
          Length = 163

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/162 (46%), Positives = 105/162 (64%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R +R +E I+S +   ID++LE +Y T DGIGLAA Q+G  + ++VIDL 
Sbjct: 6   ILTIPDERLKRKARTVEDIDS-VQGFIDDLLETLYDTEDGIGLAATQVGSEHAILVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P V INP+I+    DF + +EGCLSIP YRA V RS  +TV+ +D   +   I
Sbjct: 65  EE--RDQPQVLINPEIVATQGDF-IGEEGCLSIPGYRAKVARSEQVTVKALDRTGKPFEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             D  LA  LQHE+DHL GI+F DHLS+LK+ +  KK+ K V
Sbjct: 122 ETDTFLAIVLQHEMDHLQGIVFTDHLSKLKQQIALKKVKKYV 163


>gi|152972195|ref|YP_001337341.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238896783|ref|YP_002921528.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044]
 gi|330002243|ref|ZP_08304254.1| peptide deformylase [Klebsiella sp. MS 92-3]
 gi|166198519|sp|A6TEU0|DEF_KLEP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|150957044|gb|ABR79074.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238549110|dbj|BAH65461.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537382|gb|EGF63631.1| peptide deformylase [Klebsiella sp. MS 92-3]
          Length = 169

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +V INP+++   D  +  +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  REEQLVLINPEMLE-KDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|319764921|ref|YP_004128858.1| peptide deformylase [Alicycliphilus denitrificans BC]
 gi|317119482|gb|ADV01971.1| peptide deformylase [Alicycliphilus denitrificans BC]
          Length = 171

 Score =  144 bits (362), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 106/160 (66%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P+  ++  +  ++D+ML  MY  +GIGLAA Q+ V  R+VVID+ 
Sbjct: 5   PILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P+V INP+I   S +  + +EGCLS+P     V+RS  +  R +D + Q + I
Sbjct: 65  EE--RDQPLVLINPEITWASPETRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQPRTI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K
Sbjct: 123 EAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLK 162


>gi|294638020|ref|ZP_06716280.1| peptide deformylase [Edwardsiella tarda ATCC 23685]
 gi|291088812|gb|EFE21373.1| peptide deformylase [Edwardsiella tarda ATCC 23685]
          Length = 171

 Score =  144 bits (362), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 107/157 (68%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   FPDERLRTIAKPVNEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDISEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++    +  + +EGCLS+P+ RA V R+  ITVR +D + +   +  DG
Sbjct: 67  RDQRLVLINPELLQKGGETGI-EEGCLSVPEQRALVPRAETITVRALDRDGKPFELETDG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL
Sbjct: 126 LLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKL 162


>gi|206580091|ref|YP_002236311.1| peptide deformylase [Klebsiella pneumoniae 342]
 gi|288933300|ref|YP_003437359.1| peptide deformylase [Klebsiella variicola At-22]
 gi|290512102|ref|ZP_06551470.1| peptide deformylase [Klebsiella sp. 1_1_55]
 gi|238058213|sp|B5XNC4|DEF_KLEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|206569149|gb|ACI10925.1| peptide deformylase [Klebsiella pneumoniae 342]
 gi|288888029|gb|ADC56347.1| peptide deformylase [Klebsiella variicola At-22]
 gi|289775892|gb|EFD83892.1| peptide deformylase [Klebsiella sp. 1_1_55]
          Length = 169

 Score =  144 bits (362), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +V INP+++   D  +  +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  REERLVLINPELLE-KDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|119471681|ref|ZP_01614066.1| N-terminal methionine peptide deformylase [Alteromonadales
           bacterium TW-7]
 gi|119445460|gb|EAW26747.1| N-terminal methionine peptide deformylase [Alteromonadales
           bacterium TW-7]
          Length = 168

 Score =  144 bits (362), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 107/164 (65%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR +++ +  ++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTIAKDVADVDDQVRQIVKDMLETMYDENGIGLAATQVNIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+II   D  ++ +EGCLS+P+  A V R+  +TV  ++ N +
Sbjct: 61  IDVSEE--RDEPLVLINPQIIK-KDGSTISEEGCLSVPNSYAKVDRAETVTVAALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K
Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEK 161


>gi|194439835|ref|ZP_03071900.1| peptide deformylase [Escherichia coli 101-1]
 gi|194421225|gb|EDX37247.1| peptide deformylase [Escherichia coli 101-1]
 gi|323974492|gb|EGB69619.1| peptide deformylase [Escherichia coli TW10509]
          Length = 169

 Score =  143 bits (361), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + A+G
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|222054052|ref|YP_002536414.1| peptide deformylase [Geobacter sp. FRC-32]
 gi|221563341|gb|ACM19313.1| peptide deformylase [Geobacter sp. FRC-32]
          Length = 171

 Score =  143 bits (361), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 107/167 (64%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+KK ++ FPDP L++  +P+  IN  +  L+ +M E MY   G+GLAA QIGV  R+VV
Sbjct: 1   MIKK-ILTFPDPELKKKCQPVTVINDKVRELVRDMAETMYDAPGVGLAAPQIGVHQRVVV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     +   +V INP +I  +D  +  +EGCLSIP Y A+V+R   + V+ ++   +
Sbjct: 60  IDVTGKDEQPQLLVAINP-VIVHADGEAYEEEGCLSIPKYAANVRRHERVVVKALNLEGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLA   QHE+DHL+GILFIDH+S LKR++  +K  + ++
Sbjct: 119 EVTFKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRRTME 165


>gi|319897841|ref|YP_004136038.1| peptide deformylase [Haemophilus influenzae F3031]
 gi|317433347|emb|CBY81725.1| peptide deformylase [Haemophilus influenzae F3031]
          Length = 169

 Score =  143 bits (361), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+    P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ ID++ 
Sbjct: 6   VLIYPDDHLKVACEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +   + 
Sbjct: 65  -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K
Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLK 161


>gi|307132806|ref|YP_003884822.1| peptide deformylase [Dickeya dadantii 3937]
 gi|306530335|gb|ADN00266.1| peptide deformylase [Dickeya dadantii 3937]
          Length = 169

 Score =  143 bits (361), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 109/159 (68%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRIKAQPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S D  + +EGCLSIP+ RA V R+  ++VR +D   +   + A+G
Sbjct: 67  RDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAERVSVRALDREGKPFELEAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL +
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAR 164


>gi|77917861|ref|YP_355676.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380]
 gi|77543944|gb|ABA87506.1| peptide deformylase [Pelobacter carbinolicus DSM 2380]
          Length = 171

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 104/163 (63%), Gaps = 6/163 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  +PDP+L+  S PI  I  +I  L  +M E MY+  G+GLAA Q+G+  +LVV+D  
Sbjct: 5   PIRHYPDPVLKNKSEPILTITEEIKTLAADMAETMYAAPGVGLAAPQVGINKKLVVMDC- 63

Query: 65  DHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             A ++NP  +V INP+II    D S  +EGCLS+P Y   +KR++ + VRY +   Q  
Sbjct: 64  --APKENPELIVAINPEIIEREGD-SFEEEGCLSVPGYYCRIKRNSHVKVRYQNLEGQTV 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              A GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  K+
Sbjct: 121 EREATGLLAIAFQHEIDHLHGLLFVDHLSSLKKNMFRKKYQKI 163


>gi|56417231|ref|YP_154305.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. St. Maries]
 gi|222475595|ref|YP_002564012.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Florida]
 gi|254995399|ref|ZP_05277589.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Mississippi]
 gi|255003586|ref|ZP_05278550.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Puerto Rico]
 gi|255004717|ref|ZP_05279518.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Virginia]
 gi|56388463|gb|AAV87050.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. St. Maries]
 gi|222419733|gb|ACM49756.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Florida]
          Length = 185

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 17/177 (9%)

Query: 5   PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL+  PD  L   S  +        +  L +NMLE MY   GIGLAAVQ+GV  R+ V+D
Sbjct: 5   PLLTLPDSRLSLCSEEVHAADFGPQLETLTNNMLETMYHNKGIGLAAVQVGVHKRICVVD 64

Query: 63  LQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           L+  + R                 P+V +NP ++  S+  +  +EGCLS+P YR  V+R 
Sbjct: 65  LEYGSDRYEIPEDDGVGEYRATCGPVVILNPIVVEESEQLATMEEGCLSVPGYRETVQRP 124

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I V+Y D N Q + I A GLLA CLQHELDHLNG++F+  +S+LKRDM+ +K+ K
Sbjct: 125 ERIVVQYTDLNRQTKYIKACGLLARCLQHELDHLNGVVFLQRVSKLKRDMVMEKIRK 181


>gi|254784305|ref|YP_003071733.1| peptide deformylase [Teredinibacter turnerae T7901]
 gi|259645186|sp|C5BKQ0|DEF_TERTT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|237684580|gb|ACR11844.1| peptide deformylase [Teredinibacter turnerae T7901]
          Length = 168

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 105/160 (65%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPD  LR V++P+E+++  +  +ID+M E MY   GIGLAA Q+ V  +++VID+ 
Sbjct: 5   PILEFPDARLRTVAKPVEQVDERVRAIIDDMFETMYDAPGIGLAATQVNVHEQIIVIDIS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           ++     P+VFINP+I    +    Y+EGCLS+P +  +V R   + V  ++ + +  ++
Sbjct: 65  EN--HDEPLVFINPRIDVLDETLFDYEEGCLSVPGFYEEVTRPRHVRVTALNRDGEEFVL 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +GLLA C+QHE+DHL G LF+D++S +KR  I KK+ K
Sbjct: 123 EPEGLLAVCIQHEIDHLKGKLFVDYVSNIKRQRIRKKLEK 162


>gi|288941787|ref|YP_003444027.1| peptide deformylase [Allochromatium vinosum DSM 180]
 gi|288897159|gb|ADC62995.1| peptide deformylase [Allochromatium vinosum DSM 180]
          Length = 185

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPDP LR+ +RP+E+++  I  L+D+MLE MY+  GIGLAA Q+ V  +++VID+ +
Sbjct: 6   ILTFPDPRLRQKARPVEQVDDQIRRLVDDMLETMYAAPGIGLAATQVDVQRQIIVIDVSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H   P+ FINP+++   +      EGCLS+P +   V R+  +TV  +D + +   + 
Sbjct: 66  -GH-DTPLCFINPRLVA-REGTEQMDEGCLSVPGFFETVTRAERVTVEALDRDGKPFKLD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHL+G LF+DH+S LKR  I  K+ K
Sbjct: 123 ADGLLAVCIQHEMDHLDGKLFVDHISILKRQRIRHKLEK 161


>gi|15603424|ref|NP_246498.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|13431442|sp|P57948|DEF_PASMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|12721951|gb|AAK03643.1| Def [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 170

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 111/165 (67%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++++PD  L+ +++P+ ++N +I  ++DNM E MY  +GIGLAA Q+ +  R++ 
Sbjct: 1   MARLNVLVYPDERLKIIAKPVVEVNDEIREIVDNMFETMYLEEGIGLAATQVNIHQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N  V INP+II    +  + +EGCLS+P +R  V R   +T++ +D + +
Sbjct: 61  IDVE--GTKENQYVLINPEIIDSCGETGI-EEGCLSLPGFRGFVPRKEKVTIKALDRHGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              + A+GLLA C+QHE+DHLNGI+F D+LS LKR  + +K+ KL
Sbjct: 118 EYTLSAEGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLLKL 162


>gi|95928563|ref|ZP_01311310.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
 gi|95135353|gb|EAT17005.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
          Length = 171

 Score =  143 bits (361), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 104/161 (64%), Gaps = 6/161 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD +L  +S PI  ++ +I  L  +M E MY+  G+GLAA Q+G+  RL+V+D      
Sbjct: 9   YPDAVLAEMSEPIAVVDDEIRQLAADMAETMYAAPGVGLAAPQVGISRRLIVLDC---GG 65

Query: 69  RKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            +NP +   +NP+I+    D S  +EGCLS+P Y A VKRS+++ VRY+D + Q     A
Sbjct: 66  EENPELIKAVNPEILERQGD-SCEEEGCLSVPGYYAAVKRSSWVKVRYVDMDGQTVEREA 124

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +GLLA C QHE+DHL+G LF+D LS LK+ M  KK  K+++
Sbjct: 125 EGLLAICFQHEIDHLDGKLFVDRLSSLKKGMFRKKYPKILE 165


>gi|254483306|ref|ZP_05096537.1| peptide deformylase [marine gamma proteobacterium HTCC2148]
 gi|214036401|gb|EEB77077.1| peptide deformylase [marine gamma proteobacterium HTCC2148]
          Length = 168

 Score =  143 bits (360), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR V+ P+  +      L+D+MLE MY+  GIGLAA Q+ V  R++VIDL +   
Sbjct: 9   FPDPRLRTVAAPVNSVTDKHRQLLDDMLETMYAAPGIGLAATQVNVHERILVIDLSEK-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           + +P+VFINP++     +   Y EGCLS+P Y   V R   I V+ +  + +      +G
Sbjct: 67  QNDPLVFINPEVEILDKELGEYDEGCLSVPGYYETVNRPQRIAVKALGRDGKPFSSEIEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K
Sbjct: 127 LLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEK 162


>gi|88801027|ref|ZP_01116576.1| peptide deformylase [Reinekea sp. MED297]
 gi|88776230|gb|EAR07456.1| peptide deformylase [Reinekea sp. MED297]
          Length = 169

 Score =  143 bits (360), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 100/156 (64%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR V++PIEK++ +I  L D+MLE MY   GIGLAA Q+    RL+V+D+ +   
Sbjct: 9   FPDPRLRTVAKPIEKVDGEIQKLADDMLETMYDAPGIGLAASQVDRHIRLIVVDVSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           + +P + INP+     +D   YQEGCLS+P Y   V RS  I+VR ++ +       A  
Sbjct: 67  QNDPHILINPEYDRLGEDIE-YQEGCLSVPGYYEKVSRSDRISVRALNRDGDAIEFEATD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           L A C+QHE+DHL+G LF+D+LS LKR  I KK+ K
Sbjct: 126 LFAICIQHEIDHLDGKLFVDYLSNLKRTRIRKKLEK 161


>gi|22127893|ref|NP_671316.1| peptide deformylase [Yersinia pestis KIM 10]
 gi|45440100|ref|NP_991639.1| peptide deformylase [Yersinia pestis biovar Microtus str. 91001]
 gi|51597955|ref|YP_072146.1| peptide deformylase [Yersinia pseudotuberculosis IP 32953]
 gi|108809222|ref|YP_653138.1| peptide deformylase [Yersinia pestis Antiqua]
 gi|108813987|ref|YP_649754.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|145597483|ref|YP_001161558.1| peptide deformylase [Yersinia pestis Pestoides F]
 gi|150260710|ref|ZP_01917438.1| polypeptide deformylase [Yersinia pestis CA88-4125]
 gi|153950090|ref|YP_001402830.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758]
 gi|162418261|ref|YP_001605206.1| peptide deformylase [Yersinia pestis Angola]
 gi|165927898|ref|ZP_02223730.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936499|ref|ZP_02225067.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010552|ref|ZP_02231450.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213183|ref|ZP_02239218.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398768|ref|ZP_02304292.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419139|ref|ZP_02310892.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425700|ref|ZP_02317453.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468246|ref|ZP_02332950.1| peptide deformylase [Yersinia pestis FV-1]
 gi|170022577|ref|YP_001719082.1| peptide deformylase [Yersinia pseudotuberculosis YPIII]
 gi|186897151|ref|YP_001874263.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+]
 gi|218927448|ref|YP_002345323.1| peptide deformylase [Yersinia pestis CO92]
 gi|229836276|ref|ZP_04456443.1| peptide deformylase [Yersinia pestis Pestoides A]
 gi|229840100|ref|ZP_04460259.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842182|ref|ZP_04462337.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904518|ref|ZP_04519629.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|270488264|ref|ZP_06205338.1| peptide deformylase [Yersinia pestis KIM D27]
 gi|294502316|ref|YP_003566378.1| peptide deformylase [Yersinia pestis Z176003]
 gi|23396545|sp|Q8ZJ79|DEF_YERPE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81691640|sp|Q664V4|DEF_YERPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123073067|sp|Q1CCX6|DEF_YERPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123372104|sp|Q1C2X9|DEF_YERPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158514064|sp|A4TH23|DEF_YERPP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167012067|sp|A7FNK2|DEF_YERP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687338|sp|A9R927|DEF_YERPG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238688470|sp|B1JJH8|DEF_YERPY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238691391|sp|B2K504|DEF_YERPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21961030|gb|AAM87567.1|AE014004_5 peptide deformylase [Yersinia pestis KIM 10]
 gi|45434955|gb|AAS60516.1| polypeptide deformylase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51591237|emb|CAH22903.1| polypeptide deformylase [Yersinia pseudotuberculosis IP 32953]
 gi|108777635|gb|ABG20154.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|108781135|gb|ABG15193.1| peptide deformylase [Yersinia pestis Antiqua]
 gi|115346059|emb|CAL18925.1| polypeptide deformylase [Yersinia pestis CO92]
 gi|145209179|gb|ABP38586.1| peptide deformylase [Yersinia pestis Pestoides F]
 gi|149290118|gb|EDM40195.1| polypeptide deformylase [Yersinia pestis CA88-4125]
 gi|152961585|gb|ABS49046.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758]
 gi|162351076|gb|ABX85024.1| peptide deformylase [Yersinia pestis Angola]
 gi|165915615|gb|EDR34224.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165920174|gb|EDR37475.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990642|gb|EDR42943.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205481|gb|EDR49961.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963133|gb|EDR59154.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051272|gb|EDR62680.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167055390|gb|EDR65184.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749111|gb|ACA66629.1| peptide deformylase [Yersinia pseudotuberculosis YPIII]
 gi|186700177|gb|ACC90806.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+]
 gi|229678636|gb|EEO74741.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|229690492|gb|EEO82546.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696466|gb|EEO86513.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706344|gb|EEO92351.1| peptide deformylase [Yersinia pestis Pestoides A]
 gi|262360396|gb|ACY57117.1| peptide deformylase [Yersinia pestis D106004]
 gi|262364346|gb|ACY60903.1| peptide deformylase [Yersinia pestis D182038]
 gi|270336768|gb|EFA47545.1| peptide deformylase [Yersinia pestis KIM D27]
 gi|294352775|gb|ADE63116.1| peptide deformylase [Yersinia pestis Z176003]
 gi|320013375|gb|ADV96946.1| peptide deformylase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 170

 Score =  143 bits (360), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++VID+ ++  
Sbjct: 9   YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIVIDISEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   +  DG
Sbjct: 67  RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELETDG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|119475268|ref|ZP_01615621.1| peptide deformylase [marine gamma proteobacterium HTCC2143]
 gi|119451471|gb|EAW32704.1| peptide deformylase [marine gamma proteobacterium HTCC2143]
          Length = 168

 Score =  143 bits (360), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 99/156 (63%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++ ++ ++  I  L+D+ML  MY   GIGLAA QI +  R+VVID+ +   
Sbjct: 9   FPDPRLRTIAKTVDTVDESIRTLLDDMLVTMYDASGIGLAATQINIHQRIVVIDVSETGD 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP+II        Y+EGCLS+P +   V R   I V+ +D +     +  +G
Sbjct: 69  Q--PQVFINPEIIILDGPDHEYEEGCLSVPGFHETVSRPEKIIVKALDRDGNPFELQPEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHLNG LF+DH+S+LKR  I  K+ K
Sbjct: 127 LLAVCIQHEVDHLNGKLFVDHISQLKRKRIRAKLEK 162


>gi|148262893|ref|YP_001229599.1| peptide deformylase [Geobacter uraniireducens Rf4]
 gi|146396393|gb|ABQ25026.1| peptide deformylase [Geobacter uraniireducens Rf4]
          Length = 171

 Score =  143 bits (360), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M++K ++ FPDP L++ S+P+  IN+ ++ L+ +M E MY   G+GLAA QIGV  R+VV
Sbjct: 1   MIRK-ILTFPDPELKKKSQPVVVINNKVIELVRDMAETMYDAPGVGLAAPQIGVHQRIVV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+         +V INP +I  +D  S  +EGCLSIP Y A+V+R   + V+ ++ + +
Sbjct: 60  IDVAGKDDPPQLIVAINP-VIIHADGESYEEEGCLSIPKYAANVRRHERVVVKALNLDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLA   QHE+DHL+GILFIDH+S LKR++  +K  + ++
Sbjct: 119 EITCKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRRTLE 165


>gi|261866825|ref|YP_003254747.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293391665|ref|ZP_06635999.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261412157|gb|ACX81528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290952199|gb|EFE02318.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 170

 Score =  143 bits (360), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 107/157 (68%), Gaps = 3/157 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+P+  L+ V  P+ ++N +   +IDNM + MY   GIGLAA Q+ +L R++ ID++ 
Sbjct: 6   VLIYPEEHLKVVCDPVVEVNDNTRKIIDNMFDTMYQEGGIGLAAPQVDILQRIITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N +V INP+I+    +  + +EGCLSIP +RA V R   +TV+ +D + +   + 
Sbjct: 65  -GDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLK 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+
Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKL 159


>gi|148978497|ref|ZP_01814971.1| peptide deformylase [Vibrionales bacterium SWAT-3]
 gi|145962404|gb|EDK27684.1| peptide deformylase [Vibrionales bacterium SWAT-3]
          Length = 171

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 105/160 (65%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VVID+ +
Sbjct: 6   VLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D +       
Sbjct: 66  T--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGNEFTFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|326793337|ref|YP_004311157.1| peptide deformylase [Marinomonas mediterranea MMB-1]
 gi|326544101|gb|ADZ89321.1| Peptide deformylase [Marinomonas mediterranea MMB-1]
          Length = 168

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 106/155 (68%), Gaps = 4/155 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP LR V++ +E++  +I   ID+ML+ MY   GIGLAA Q+ +  R+VV+D  
Sbjct: 5   PVLEYPDPKLRTVAKEVEQVTPEIQAYIDDMLDTMYDESGIGLAATQVDIHLRIVVMD-- 62

Query: 65  DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            H+  +N PMVFINP+ +   D+ + +QEGCLS+P Y   + R+A + V+ +D + +   
Sbjct: 63  -HSEERNEPMVFINPEFVVLDDEPNEFQEGCLSVPGYYEHIYRAAKVKVKALDRDGKPFE 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           +  D L+A C+QHE+DHL+G LF+D++S LKR+ I
Sbjct: 122 MEVDELMAVCVQHEIDHLDGKLFVDYISPLKRNRI 156


>gi|167950832|ref|ZP_02537906.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 194

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 104/161 (64%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++P+ +++  I  L+D+M E MY   GIGLAA Q+ V  +++VIDL +   
Sbjct: 27  FPDSRLRNKAKPVSQVDDAIRKLVDDMFETMYEAPGIGLAATQVNVAKQIIVIDLSEE-- 84

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P+  INP+I++   +  +  EGCLS+P     VKR+A I+VR +D +     +  +G
Sbjct: 85  KNQPLCLINPEILSKEGEEKM-DEGCLSVPGIYESVKRAARISVRALDRDGAPFELETEG 143

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHLNG LF+D+LS LKR  I K++ K  +LR
Sbjct: 144 LLAVCIQHEIDHLNGKLFVDYLSSLKRQRIRKRLEKESRLR 184


>gi|260583339|ref|ZP_05851112.1| peptide deformylase [Haemophilus influenzae NT127]
 gi|260093610|gb|EEW77525.1| peptide deformylase [Haemophilus influenzae NT127]
          Length = 169

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ ID++ 
Sbjct: 6   VLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N  V INP+I+    +  + +EGCLSIP +RA V R   + VR +D + +   + 
Sbjct: 65  -GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVKVRALDRDGKEFTLD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K
Sbjct: 123 ADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161


>gi|227328917|ref|ZP_03832941.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 170

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP++I  S D  + +EGCLSIP+ RA V R+  + VR +D   +   + A  
Sbjct: 67  RDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKAFELEASE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL +
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAK 164


>gi|88860597|ref|ZP_01135234.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           tunicata D2]
 gi|88817192|gb|EAR27010.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           tunicata D2]
          Length = 167

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+ +++  I  ++ +M + MY   GIGLAA Q  +  R+VVID+ +   
Sbjct: 9   FPDERLRTIAKPVTQVDDSIKKIVADMFDTMYEESGIGLAATQANIHLRIVVIDVTED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           + + +V INP+I T  D  ++ +EGCLS+P+  A V R+  +TV+ ++ + Q   + ADG
Sbjct: 67  KSDQLVLINPEI-TKKDGSTISEEGCLSVPNSYAKVDRAETVTVKALNLDGQEFSLDADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHELDHL G LF+D+LS LKRD I KK+ K  ++
Sbjct: 126 LLAICIQHELDHLQGKLFVDYLSPLKRDRIRKKLEKEAKM 165


>gi|171464332|ref|YP_001798445.1| peptide deformylase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238692833|sp|B1XSN2|DEF_POLNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|171193870|gb|ACB44831.1| peptide deformylase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 171

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 107/159 (67%), Gaps = 2/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PD  L +V++P+ ++++ I  ++ +M + MY   G+GLAA Q+ +  R+VVID+ D
Sbjct: 6   VLCYPDSRLHKVAKPVAQVDARIKKIVADMADTMYEAPGVGLAATQVDIHERIVVIDVSD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   MVFINP+I+  S +   ++EGCLS+P++  +V+R A I V+ +D + +   I 
Sbjct: 66  E--QNELMVFINPEIVWTSSETKSWREGCLSVPEFYDEVERPAEIRVKALDIDGKEFEIE 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADG LA CLQHELDHL G +F+++LS  KR  I++KM K
Sbjct: 124 ADGSLAVCLQHELDHLQGKVFVEYLSIFKRTRISQKMKK 162


>gi|253690150|ref|YP_003019340.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259645184|sp|C6DFR5|DEF_PECCP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|251756728|gb|ACT14804.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 170

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP++I  S D  + +EGCLSIP+ RA V R+  + VR +D   +   + A  
Sbjct: 67  RDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKTFELEASE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL +
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAK 164


>gi|156932268|ref|YP_001436184.1| peptide deformylase [Cronobacter sakazakii ATCC BAA-894]
 gi|166198516|sp|A7MPE9|DEF_ENTS8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|156530522|gb|ABU75348.1| hypothetical protein ESA_00039 [Cronobacter sakazakii ATCC BAA-894]
          Length = 171

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 112/161 (69%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  RDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRDGKSFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LFID+LS +KR  I +K+ KL +++
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 166


>gi|15617090|ref|NP_240303.1| polypeptide deformylase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681842|ref|YP_002468228.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682397|ref|YP_002468781.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471547|ref|ZP_05635546.1| peptide deformylase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11131992|sp|P57563|DEF_BUCAI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767572|sp|B8D9R9|DEF_BUCA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767573|sp|B8D821|DEF_BUCAT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|25303709|pir||E84987 formylmethionine deformylase (EC 3.5.1.31) [imported] - Buchnera
           sp. (strain APS)
 gi|10039155|dbj|BAB13189.1| polypeptide deformylase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622130|gb|ACL30286.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624685|gb|ACL30840.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 173

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 108/157 (68%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR +++P+++IN  I  + ++M++ MY  +GIGLAA Q+ +  +++V++  +   
Sbjct: 9   YPDIRLRILAKPVKEINKKIQKIANDMIDTMYQEEGIGLAATQVNIPLQIIVVNTMEQ-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +KN +V INPKII    D S+ +EGCLSIP+Y+A + RS +I V+ ++ + +   I A  
Sbjct: 67  KKNNLVLINPKIIKKEGDISI-EEGCLSIPEYQASIPRSNYIQVQAVNLDGEKIEIEAKS 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +L+ C+QHE+DHL G LFID+LS+ KR+ I KK  K+
Sbjct: 126 ILSICIQHEIDHLKGKLFIDYLSKFKRERIQKKFEKI 162


>gi|311109268|ref|YP_003982121.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
 gi|310763957|gb|ADP19406.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
          Length = 170

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 108/160 (67%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VVID+ 
Sbjct: 5   PILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           + +++   +V INP+I   SDD+ +Y+EGCLS+P    DV+R++ I  + +D + +    
Sbjct: 65  EDSNQL--LVLINPEITWHSDDYKIYEEGCLSVPGVYDDVERASRIRCKALDVDGKPFEF 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHELDHL G +F+++LS LK++ I  ++ K
Sbjct: 123 EADGLLAVCVQHELDHLEGKVFVEYLSSLKQNRIKTRLKK 162


>gi|188535243|ref|YP_001909040.1| peptide deformylase [Erwinia tasmaniensis Et1/99]
 gi|238692005|sp|B2VK93|DEF_ERWT9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188030285|emb|CAO98174.1| Peptide deformylase [Erwinia tasmaniensis Et1/99]
          Length = 169

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 109/157 (69%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V I+P+++  S +  + +EGCLSIP+ RA V R+  + +R +D +     + ADG
Sbjct: 67  RDERLVLIDPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNSFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHL G LFID+LS +KR  I +K+ KL
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKL 162


>gi|167648525|ref|YP_001686188.1| peptide deformylase [Caulobacter sp. K31]
 gi|189083067|sp|B0T1S9|DEF_CAUSK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167350955|gb|ABZ73690.1| peptide deformylase [Caulobacter sp. K31]
          Length = 173

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 97/152 (63%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +L++VS+ +  ++  +  L+D+MLE MY   GIGLAAVQ+G L  ++V+DL        P
Sbjct: 17  VLKQVSKDVPAVDDALRGLMDDMLETMYDAPGIGLAAVQVGELVNVIVMDLAREGEEPAP 76

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
             F+NPKI   S++   Y+EGCLS+P+    V+R A + + Y++   +     A+ L A 
Sbjct: 77  RYFVNPKITWASEELFEYEEGCLSVPEVYDAVERPAKVKISYLNYQGEAVEEDAEELFAV 136

Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           C+QHE+DHL G+LFIDHLSRLKRD    K+ K
Sbjct: 137 CIQHEMDHLKGVLFIDHLSRLKRDRAISKVKK 168


>gi|50122919|ref|YP_052086.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
 gi|81693081|sp|Q6D002|DEF_ERWCT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49613445|emb|CAG76896.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
          Length = 169

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP++I  S D  + +EGCLSIP+ RA V R+  + VR +D   +   + A  
Sbjct: 67  RDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKAFELEASE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL +
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAK 164


>gi|298529648|ref|ZP_07017051.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511084|gb|EFI34987.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 169

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD IL + +RP+EKI+  I++L  +M  +MY   GIGLAA Q+G   R+V +DL    +
Sbjct: 8   YPDKILTQKARPVEKIDDYIIDLSRDMARLMYEHRGIGLAAPQVGESLRVVTVDLSGPDN 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +++   +INP+II  S+D +  +EGCLS+  Y+  V R+  + VR ++   +  I   + 
Sbjct: 68  QEDLFTYINPEIIA-SEDETTTEEGCLSVAGYQTRVCRARKVKVRALNLQGEEVIHEGED 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           L A CLQHE+DHLNGILFIDH+SRLKR M  KK+ K ++
Sbjct: 127 LWAVCLQHEIDHLNGILFIDHISRLKRAMYDKKVKKWLE 165


>gi|239948084|ref|ZP_04699837.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|241563350|ref|XP_002401667.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|215501859|gb|EEC11353.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|239922360|gb|EER22384.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 175

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 106/166 (63%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S+P+ +        +D+M++ MY  DG GLAAVQ+GVL R++VID++
Sbjct: 5   PIVKAPDERLKQKSQPVLEFTDQTRKFMDDMIKTMYHEDGAGLAAVQVGVLKRILVIDIK 64

Query: 65  DHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   + P     +  +NP+II  S++     EGC+S+P+ R +V R   I +RY+D + 
Sbjct: 65  DHDSVERPKDLYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRYLDYHN 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 125 KQQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|117923458|ref|YP_864075.1| peptide deformylase [Magnetococcus sp. MC-1]
 gi|117607214|gb|ABK42669.1| peptide deformylase [Magnetococcus sp. MC-1]
          Length = 173

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 98/156 (62%), Gaps = 4/156 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+V  PDP+L++ + P+  +++ I  L+ +MLE MY+  GIGLAA Q+GV  R++V+D+ 
Sbjct: 5   PIVTAPDPVLKKRAEPVVAVDASIQQLMRDMLETMYAAPGIGLAAPQVGVSKRVIVVDVT 64

Query: 64  --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
             +  A    P    NP+II    + + ++EGCLS+P+    V R   + VR ++   + 
Sbjct: 65  YSEAAAQDGEPYCLANPEIIAAEGEIT-WEEGCLSVPESYGKVDRKEHVVVRGLNAQGEL 123

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
             + A GL A CLQHE+DHL+G LFIDHLS LKR M
Sbjct: 124 VTLEAHGLFAVCLQHEIDHLDGTLFIDHLSSLKRTM 159


>gi|330831510|ref|YP_004394462.1| peptide deformylase 1 [Aeromonas veronii B565]
 gi|328806646|gb|AEB51845.1| Peptide deformylase 1 [Aeromonas veronii B565]
          Length = 170

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 106/159 (66%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V+ P+E    ++  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   FPDERLRTVAAPVETFTPELQQIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R++P+V INP++I       + +EGCLS+P  RA V R+  I +R +D N +   + AD 
Sbjct: 67  REDPLVLINPEVIEQCGSTGI-EEGCLSVPGSRALVPRAEQIKIRALDRNGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAR 164


>gi|300946508|ref|ZP_07160774.1| peptide deformylase [Escherichia coli MS 116-1]
 gi|300955324|ref|ZP_07167706.1| peptide deformylase [Escherichia coli MS 175-1]
 gi|300317768|gb|EFJ67552.1| peptide deformylase [Escherichia coli MS 175-1]
 gi|300453814|gb|EFK17434.1| peptide deformylase [Escherichia coli MS 116-1]
          Length = 169

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +  +D + +   + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKICALDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 126 LLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|88608268|ref|YP_506280.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama]
 gi|123763725|sp|Q2GE16|DEF_NEOSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|88600437|gb|ABD45905.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama]
          Length = 186

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 109/173 (63%), Gaps = 13/173 (7%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64
           L+I PDP+L  VS  +  ++ +    +D+MLE MY   GIGLAAVQ+GVL R++V+D+  
Sbjct: 6   LIIEPDPLLHEVSEAVAGLSDEKRVFLDDMLETMYHCGGIGLAAVQVGVLERIIVVDVPV 65

Query: 65  ---------DHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                    +H   K+   P  F+NP+II FS +     EGCLS+P+   ++ R   + V
Sbjct: 66  GKEWHSSPLNHVGYKSSGGPYYFVNPEIIEFSQNLVPADEGCLSLPEQHYEIIRPDAVVV 125

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +Y++ + +  ++ A+G LA C+QHE+DHLNG L++ HLS+LK D+  KK +++
Sbjct: 126 KYLNYDGEECLLKANGWLARCIQHEMDHLNGRLYVSHLSKLKHDLAIKKAAEI 178


>gi|325272511|ref|ZP_08138888.1| peptide deformylase [Pseudomonas sp. TJI-51]
 gi|324102354|gb|EGB99823.1| peptide deformylase [Pseudomonas sp. TJI-51]
          Length = 168

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 101/156 (64%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+   +  +  LID+M E MY   GIGLAA Q+ V  ++VV+DL +   
Sbjct: 9   FPDPRLRTIAKPVTVFDDALRQLIDDMFETMYEAPGIGLAATQVNVHQQVVVMDLSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +   +DD   YQEGCLS+P +  +V R   + V+  D + +   +  +G
Sbjct: 67  RSEPRVFINPTVEELTDDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPFELECEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K
Sbjct: 127 LLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEK 162


>gi|227115518|ref|ZP_03829174.1| peptide deformylase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 170

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP++I  S D  + +EGCLSIP+ RA V R+  + VR +D   +   + A  
Sbjct: 67  RDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKPFELEASE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL +
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAK 164


>gi|241760428|ref|ZP_04758522.1| peptide deformylase [Neisseria flavescens SK114]
 gi|241319097|gb|EER55590.1| peptide deformylase [Neisseria flavescens SK114]
          Length = 167

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+EKI+  I  L+ +M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   YPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVVMDLTED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 67  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++HLS+LK+  I  K+ K
Sbjct: 126 LLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKK 161


>gi|225075032|ref|ZP_03718231.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
           NRL30031/H210]
 gi|261380545|ref|ZP_05985118.1| peptide deformylase [Neisseria subflava NJ9703]
 gi|319639522|ref|ZP_07994269.1| peptide deformylase [Neisseria mucosa C102]
 gi|224953637|gb|EEG34846.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
           NRL30031/H210]
 gi|284796513|gb|EFC51860.1| peptide deformylase [Neisseria subflava NJ9703]
 gi|317399093|gb|EFV79767.1| peptide deformylase [Neisseria mucosa C102]
          Length = 167

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+EKI+  I  L+ +M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   YPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVVMDLTED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 67  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++HLS+LK+  I  K+ K
Sbjct: 126 LLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKK 161


>gi|238792969|ref|ZP_04636599.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909]
 gi|238727823|gb|EEQ19347.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++VID+ ++  
Sbjct: 9   YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + VR +D + +   + AD 
Sbjct: 67  RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKVRALDRDGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|238758793|ref|ZP_04619967.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236]
 gi|238703090|gb|EEP95633.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++VID+ ++  
Sbjct: 9   YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + VR +D + +   + AD 
Sbjct: 67  RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKVRALDRDGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|188574933|ref|YP_001911862.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519385|gb|ACD57330.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 152

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 97/135 (71%), Gaps = 5/135 (3%)

Query: 31  LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFSDDFSV 89
           L+D+M + MY   GIGLAA Q+ V  R +VID+ D    KN P VF+NP+I++   +  +
Sbjct: 16  LLDDMFQTMYEAPGIGLAASQVDVHKRFMVIDVSD---EKNLPQVFVNPEIVSKQGE-QL 71

Query: 90  YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            QEGCLS+P   ADV R+  ITVRY+D   Q Q ++ADGLLA C+QHE+DHL+G LF+D+
Sbjct: 72  CQEGCLSVPGIYADVSRADAITVRYLDRQGQAQELHADGLLAVCIQHEMDHLDGKLFVDY 131

Query: 150 LSRLKRDMITKKMSK 164
           LS LKR+M+ KK++K
Sbjct: 132 LSPLKREMVRKKLAK 146


>gi|91791393|ref|YP_561044.1| peptide deformylase [Shewanella denitrificans OS217]
 gi|91713395|gb|ABE53321.1| peptide deformylase [Shewanella denitrificans OS217]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 102/161 (63%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR ++ P+      +   ID+M+E MY+  GIGLAA Q+    +L+V+DLQD   
Sbjct: 9   FPDERLRTIAVPVTDFGPQLQAQIDSMIETMYAEKGIGLAASQVDFHQQLIVMDLQDDIE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P +FINP+I+  S +FS  +EGCLS+P   A V R+ F+T++ +D + +   + AD 
Sbjct: 69  R--PKIFINPEIVAKSGEFS-NEEGCLSVPGVYAKVDRAEFVTLKALDRDGKPFTVEADE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           L A C+QHE+DHL G LF+D+LS LKR  I  K+ K  +L 
Sbjct: 126 LFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARLE 166


>gi|238752657|ref|ZP_04614128.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
 gi|238709084|gb|EEQ01331.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+++ P++++NS+I  ++D+M + MY+ +GIGLAA Q+ V  +++VID+ ++  
Sbjct: 9   YPDERLRKIAAPVKEVNSEIQRIVDDMFDTMYAEEGIGLAATQVDVHLQIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + AD 
Sbjct: 67  RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAKL 165


>gi|118578953|ref|YP_900203.1| peptide deformylase [Pelobacter propionicus DSM 2379]
 gi|118501663|gb|ABK98145.1| peptide deformylase [Pelobacter propionicus DSM 2379]
          Length = 172

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +P+P L++ S  +  I  +I  L+ +M E MY   G+GLAA QIGV  R+++ID+
Sbjct: 3   RTILTYPNPELKKKSAAVTIITDEIRELVSDMTETMYHAPGVGLAAPQIGVHQRVIIIDV 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             H      ++ INP +I  ++  S  +EGCLS+P Y A+V+R A +TVR +D   + Q 
Sbjct: 63  SAHDEPNELIIAINP-VIVHAEGESYEEEGCLSVPKYAANVRRHASVTVRGLDLEGREQT 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            +A+GLLA   QHE+DHL+G LF+DHLS LKRD+
Sbjct: 122 WHAEGLLAIAFQHEIDHLDGRLFVDHLSPLKRDL 155


>gi|238921409|ref|YP_002934924.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146]
 gi|259645180|sp|C5BF17|DEF_EDWI9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238870978|gb|ACR70689.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146]
          Length = 171

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   FPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++    +  + +EGCLS+P+ RA V R+  I VR +D + +   +  DG
Sbjct: 67  RDQRLVLINPELLQHDGEAGI-EEGCLSVPEQRALVTRAENIKVRALDRDGKSFELETDG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL
Sbjct: 126 LLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKL 162


>gi|261346901|ref|ZP_05974545.1| peptide deformylase [Providencia rustigianii DSM 4541]
 gi|282564968|gb|EFB70503.1| peptide deformylase [Providencia rustigianii DSM 4541]
          Length = 173

 Score =  141 bits (356), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 108/161 (67%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR +++P+EK+++ I  ++D+M E MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   YPDERLRTIAKPVEKVDASIQRIVDDMFETMYDEEGIGLAATQVDIHQRIIVIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP++I    +  + +EGCLSIP+ +  V R+  + VR ++ N +   + ADG
Sbjct: 67  RSERLVLINPELIDKKGETGI-EEGCLSIPEQQGFVARAEQVKVRALNYNGELFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRQR 166


>gi|327398774|ref|YP_004339643.1| peptide deformylase [Hippea maritima DSM 10411]
 gi|327181403|gb|AEA33584.1| Peptide deformylase [Hippea maritima DSM 10411]
          Length = 168

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 102/158 (64%), Gaps = 2/158 (1%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           ++PD ILR+ ++ +EKI+  I++L++ M E MY  +GIGLAA Q+G+  +LVVIDL+   
Sbjct: 5   VYPDGILRKKAKDVEKIDDRIVDLLNQMRETMYKFNGIGLAAEQVGLQEKLVVIDLRPDG 64

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK-RSAFITVRYMDCNAQHQIIYA 126
            +  P+  INP II     F  ++EGCLS+P Y   VK R  +I V+Y+D N   QI+  
Sbjct: 65  -KNQPIELINPVIIASEGIFEEHEEGCLSVPGYYDVVKDRKKWIKVKYLDRNENEQILET 123

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D  L+  +QHE+DHLNG LFIDHL   +++   K+  K
Sbjct: 124 DEFLSVVIQHEIDHLNGKLFIDHLPPTRKEFFKKQWKK 161


>gi|238763701|ref|ZP_04624660.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638]
 gi|238698003|gb|EEP90761.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638]
          Length = 170

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++VID+ ++  
Sbjct: 9   YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + AD 
Sbjct: 67  RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|254467786|ref|ZP_05081192.1| peptide deformylase [beta proteobacterium KB13]
 gi|207086596|gb|EDZ63879.1| peptide deformylase [beta proteobacterium KB13]
          Length = 166

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 102/157 (64%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +++  +E  +     L+ +M E MY + GIGLAA Q+ V  R++VID+ D   
Sbjct: 9   YPDPRLHKIAEIVEVFDESTEKLVQDMAETMYESKGIGLAATQVDVHRRIIVIDISDD-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +K+ +V INPK+I F D    Y EGCLS+P +   VKR   IT+ Y D     + + ADG
Sbjct: 67  KKDLLVLINPKLIKF-DGQQEYDEGCLSVPGFFETVKRYENITISYQDLKGNIKTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LL+ C+QHE+DHL G +FI++LS+LK+  I KK+SKL
Sbjct: 126 LLSVCIQHEMDHLVGKVFIEYLSQLKQQRIKKKISKL 162


>gi|317401262|gb|EFV81903.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
          Length = 170

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 108/160 (67%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VVID+ 
Sbjct: 5   PILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           + +++   +V INP+I   SDD+ +Y+EGCLS+P    +V+R++ I  + +D + +    
Sbjct: 65  EESNQL--LVLINPEITWRSDDYKIYEEGCLSVPGIYDEVERASRIRCKALDIDGKPFEF 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHELDHL G +F+++LS LK++ I  K+ K
Sbjct: 123 DADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKK 162


>gi|157964273|ref|YP_001499097.1| peptide deformylase [Rickettsia massiliae MTU5]
 gi|157844049|gb|ABV84550.1| Polypeptide deformylase [Rickettsia massiliae MTU5]
          Length = 176

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 107/166 (64%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++VID++
Sbjct: 6   PIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHKDGAGLAAVQVGVLKRILVIDIK 65

Query: 65  DH---AHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   A  K+  P+  +NP+II  S++     EGC+S+P+ R +V R   I +R +D + 
Sbjct: 66  DHDSVARPKDFYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRCLDYHG 125

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 126 KSQELQANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 171


>gi|291278698|ref|YP_003495533.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
 gi|290753400|dbj|BAI79777.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
          Length = 172

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 108/165 (65%), Gaps = 1/165 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+PILRR S+ +++I+  ++ LID+M+E MY+  G+GLAA Q+GV  R++VID   
Sbjct: 5   IVKYPNPILRRKSKEVKEIDGRVIKLIDDMVETMYAAPGLGLAAPQVGVNERILVIDPSA 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP +I  +D   + +EGCLSIP   A+V+R+A + V+ +D + +   I 
Sbjct: 65  GEDKSKLIKIINP-VIVEADGEVIEEEGCLSIPGEYANVRRAAKVLVKGLDVDGKEVEIE 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           A+ LLA   QHE+DHLNG+LFID LS  KR+ I K + K +   D
Sbjct: 124 AEDLLARAFQHEIDHLNGVLFIDRLSPTKRETIQKHIKKRIAAGD 168


>gi|269140540|ref|YP_003297241.1| peptide deformylase [Edwardsiella tarda EIB202]
 gi|267986201|gb|ACY86030.1| peptide deformylase [Edwardsiella tarda EIB202]
 gi|304560325|gb|ADM42989.1| Peptide deformylase [Edwardsiella tarda FL6-60]
          Length = 171

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   FPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++    +  + +EGCLS+P+ RA V R+  I VR +D + +   +  DG
Sbjct: 67  RDQRLVLINPELLQHDGEAGI-EEGCLSVPEQRALVTRAESIKVRALDRDGKPFELETDG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL
Sbjct: 126 LLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKL 162


>gi|67458716|ref|YP_246340.1| peptide deformylase [Rickettsia felis URRWXCal2]
 gi|67004249|gb|AAY61175.1| Polypeptide deformylase [Rickettsia felis URRWXCal2]
          Length = 175

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 106/166 (63%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S+P+ +        +D+M++ MY  DG GLAAVQ+GVL R++VID++
Sbjct: 5   PIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMVKTMYHEDGGGLAAVQVGVLKRIMVIDIK 64

Query: 65  DHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   + P  F     +NP+II  S++     EGC+S+P+ R +V R   I +RY+D + 
Sbjct: 65  DHDPIERPKDFYPLFIVNPEIIEKSEELITANEGCISVPEQRIEVARPESIKIRYLDYHG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 125 KSQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|238797211|ref|ZP_04640712.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969]
 gi|238718848|gb|EEQ10663.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969]
          Length = 170

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++VID+ ++  
Sbjct: 9   YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + AD 
Sbjct: 67  RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|123444064|ref|YP_001008034.1| peptide deformylase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|238788878|ref|ZP_04632668.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641]
 gi|332163227|ref|YP_004299804.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|158512897|sp|A1JRZ1|DEF_YERE8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122091025|emb|CAL13908.1| polypeptide deformylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238722905|gb|EEQ14555.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641]
 gi|318607709|emb|CBY29207.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325667457|gb|ADZ44101.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330861818|emb|CBX71990.1| peptide deformylase [Yersinia enterocolitica W22703]
          Length = 170

 Score =  141 bits (355), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++VID+ ++  
Sbjct: 9   YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + AD 
Sbjct: 67  RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|157825411|ref|YP_001493131.1| peptide deformylase [Rickettsia akari str. Hartford]
 gi|166198521|sp|A8GMJ8|DEF_RICAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157799369|gb|ABV74623.1| peptide deformylase [Rickettsia akari str. Hartford]
          Length = 175

 Score =  141 bits (355), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++VID++
Sbjct: 5   PIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILVIDIK 64

Query: 65  DHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   + P  F     +NP++I  S++     EGC+S+P  R +V R   I +RY+D + 
Sbjct: 65  DHDSVERPKDFYPLFIVNPEMIEKSEELIKSNEGCISVPGQRIEVARPESIKIRYLDYHG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 125 KSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|238898789|ref|YP_002924471.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259645182|sp|C4K6Y0|DEF_HAMD5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229466549|gb|ACQ68323.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 171

 Score =  141 bits (355), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 109/162 (67%), Gaps = 3/162 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR+++ P++K++  I  + D+MLE MY  +GIGLAA Q+ +  R++VID+ +  H
Sbjct: 9   FPDDRLRKIASPVKKMDDQIRQIADDMLETMYQAEGIGLAATQVNIHQRIIVIDVSEDRH 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P++ INP+++  S +  + +EGCLSIP  +A + R+  IT++ ++   +   + AD 
Sbjct: 69  Q--PLILINPELLEKSGETGI-EEGCLSIPGEKAFIPRAKEITIQALNREGRSFRLSADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           LLA C+QHE+DHL G LF+D+LS  KR  I KKM KL ++ +
Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPFKRQRIQKKMEKLQKINE 167


>gi|189426265|ref|YP_001953442.1| peptide deformylase [Geobacter lovleyi SZ]
 gi|189422524|gb|ACD96922.1| peptide deformylase [Geobacter lovleyi SZ]
          Length = 166

 Score =  141 bits (355), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 104/161 (64%), Gaps = 1/161 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P++ FPDP+L++ S P+  I  +I+ L  +M E MY   G+GLAA QIGVL R++VID+
Sbjct: 3   RPILAFPDPLLKQKSAPVTIITDEIIQLARDMAETMYDAPGVGLAAPQIGVLQRVIVIDV 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +  INP ++   +  +  +EGCLS+PD+ A+VKR   + V+ +    Q +I
Sbjct: 63  AAKNEPPQLITAINP-VVIHGEGETYEEEGCLSVPDFSANVKRHERVVVKGLSLEGQERI 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +ADGLLA   QHE+DHL+GILF+D LS LKRD+  KK  K
Sbjct: 122 WHADGLLAVAFQHEIDHLDGILFVDRLSPLKRDLFVKKCKK 162


>gi|310778475|ref|YP_003966808.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
 gi|309747798|gb|ADO82460.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
          Length = 170

 Score =  141 bits (355), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + DP+LR+ + P+E +N +I  +ID+M+E M+   G+GLAA QIGV  R+ VID++D   
Sbjct: 8   YGDPVLRKEALPVEDVNDEIREIIDSMVESMHEAGGVGLAAPQIGVSKRIFVIDIEDGKI 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           RK     INP+ + FS +   ++EGCLS+P     VKR A + ++Y + N +  I  A+G
Sbjct: 68  RK----VINPEFLEFSKEIVEHEEGCLSVPGVYKKVKRPARVKIKYTNENGEKVIEEAEG 123

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LL+   QHE DHL+  LF+D LS + + M++KK+  L
Sbjct: 124 LLSRAFQHEADHLDATLFVDKLSPVAKRMVSKKLQAL 160


>gi|304415447|ref|ZP_07396096.1| peptide deformylase [Candidatus Regiella insecticola LSR1]
 gi|304282711|gb|EFL91225.1| peptide deformylase [Candidatus Regiella insecticola LSR1]
          Length = 200

 Score =  140 bits (354), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 110/167 (65%), Gaps = 10/167 (5%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD--- 65
           FPD  LR++++P+EKI+++I  ++D+M + +Y+ +GIGLAA Q+ +  +++VI + D   
Sbjct: 32  FPDVQLRKIAKPVEKIDANIERIVDDMFDTIYAEEGIGLAATQVNIHKQIIVIHIPDDSD 91

Query: 66  -----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                 AH + P+V INP+++  S +  + +EGCLSIP  R  VKRS  + +R +D +  
Sbjct: 92  QNERIEAHYR-PLVLINPELLEESGETGI-KEGCLSIPGVREWVKRSERVKIRALDRDGN 149

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHE+DHL G LFID+LS LK   I KK+ K  Q
Sbjct: 150 SFTLEADGLLAICIQHEMDHLKGKLFIDYLSPLKFQRIQKKIRKKAQ 196


>gi|77359005|ref|YP_338580.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123587108|sp|Q3IDI2|DEF_PSEHT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|76873916|emb|CAI85137.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 167

 Score =  140 bits (354), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 102/156 (65%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +++ +  ++  +  +I +MLE MY  +GIGLAA Q+ +  R+VVID+ +   
Sbjct: 9   FPDERLRTIAQEVAHVDDQVRVIIKDMLETMYDENGIGLAATQVNIHQRIVVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P+V INP+II   D  +V +EGCLS+P+  A V R+  +TV  ++   +  ++ AD 
Sbjct: 67  RNEPLVLINPQIIK-KDGTTVSEEGCLSVPNSYAKVDRAETVTVAALNEQGEEFVLDADE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL G LFID+LS LKR  I KK+ K
Sbjct: 126 LLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEK 161


>gi|84393441|ref|ZP_00992198.1| peptide deformylase [Vibrio splendidus 12B01]
 gi|86147129|ref|ZP_01065445.1| peptide deformylase [Vibrio sp. MED222]
 gi|84375957|gb|EAP92847.1| peptide deformylase [Vibrio splendidus 12B01]
 gi|85835013|gb|EAQ53155.1| peptide deformylase [Vibrio sp. MED222]
          Length = 170

 Score =  140 bits (354), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 103/160 (64%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VVID+ +
Sbjct: 6   VLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I     +  + +EGCLS+P  RA V R+A +TV+ +D         
Sbjct: 66  T--RDEPMVLINPEITDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDREGNEFTFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKI 162


>gi|56750222|ref|YP_170923.1| peptide deformylase [Synechococcus elongatus PCC 6301]
 gi|81300149|ref|YP_400357.1| peptide deformylase [Synechococcus elongatus PCC 7942]
 gi|56685181|dbj|BAD78403.1| polypeptide deformylase [Synechococcus elongatus PCC 6301]
 gi|81169030|gb|ABB57370.1| peptide deformylase [Synechococcus elongatus PCC 7942]
          Length = 192

 Score =  140 bits (354), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 98/153 (64%), Gaps = 2/153 (1%)

Query: 1   MVKKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + K PL +    D +LR+ ++ + +I+ ++   I  ML+ MYS DGIGLAA Q+G+  +L
Sbjct: 14  LAKPPLDLHYLGDRVLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQL 73

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VIDL+    +  P+V INPKI   + D    QEGCLSIP    DV+R   + V Y D N
Sbjct: 74  IVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDEN 133

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + Q + ADGLLA C+QHE+DHLNG+LF+D + 
Sbjct: 134 GRPQRLVADGLLARCIQHEMDHLNGVLFVDRVE 166


>gi|291333895|gb|ADD93575.1| peptide deformylase [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 171

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR  ++P++++ +    LIDNM+  MY + GIGLAA Q+    R++VID+ +   
Sbjct: 9   FPDPRLRTKAKPVQEVTNVHKELIDNMIHTMYESKGIGLAATQVDFHERILVIDISEE-- 66

Query: 69  RKNPMVFINPKI-ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           R +P VFINP++ I    + S Y+EGCLS+P +  ++ R   I V Y+D + + Q +  +
Sbjct: 67  RDDPQVFINPEVEILNKKEKSGYEEGCLSVPGFYEEIIRPEKIKVTYLDRDGKKQTLMPE 126

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           GLLA  +QHE+DHL GIL +D++S +KR  I +K+ K
Sbjct: 127 GLLAVVIQHEIDHLEGILMVDYISSIKRQRIKQKLQK 163


>gi|238754205|ref|ZP_04615563.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
 gi|238707701|gb|EEQ00061.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
          Length = 170

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  +++VID+ ++  
Sbjct: 9   YPDERLRKVATPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQQIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  I +R +D + +   + AD 
Sbjct: 67  RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKIKIRALDRDGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLDKLAKL 165


>gi|224826194|ref|ZP_03699297.1| peptide deformylase [Lutiella nitroferrum 2002]
 gi|224601831|gb|EEG08011.1| peptide deformylase [Lutiella nitroferrum 2002]
          Length = 167

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 102/156 (65%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V+RP+  ++  I  LID+M E MY  +GIGLAA Q+ V  R+VVID+ +   
Sbjct: 9   YPDERLHKVARPVGAVDERIRQLIDDMAETMYECNGIGLAATQVNVHERVVVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +     F+NP+I+    D +VY+EGCLS+P     V RS ++ VR ++ N +   I  DG
Sbjct: 67  KSALTAFVNPEIVERRGD-TVYEEGCLSVPGIYDKVHRSEWVRVRALNRNGEPFEIETDG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL+G +F+D+LS+LK+  I  KM K
Sbjct: 126 LLAICIQHEIDHLDGKVFVDYLSQLKQSRIKAKMKK 161


>gi|315125137|ref|YP_004067140.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
           SM9913]
 gi|315013650|gb|ADT66988.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
           SM9913]
          Length = 168

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 105/164 (64%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR +++ +  ++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTIAKEVTVVDDQVREIVKDMLETMYDENGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+II   D  +V +EGCLS+P   A V R+  +TV  ++   +
Sbjct: 61  IDVSEE--RNEPLVLINPQIIK-KDGSTVSEEGCLSVPHSYAKVDRAETVTVAALNEEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I+ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K
Sbjct: 118 EFILDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEK 161


>gi|261378988|ref|ZP_05983561.1| peptide deformylase [Neisseria cinerea ATCC 14685]
 gi|269144603|gb|EEZ71021.1| peptide deformylase [Neisseria cinerea ATCC 14685]
          Length = 167

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   YPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVVMDLTED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 67  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAESVKVEALNEKGEKFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++HLS+LK+  I  K+ K
Sbjct: 126 LLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKK 161


>gi|121606766|ref|YP_984095.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
 gi|120595735|gb|ABM39174.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
          Length = 173

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 103/162 (63%), Gaps = 4/162 (2%)

Query: 5   PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL I  +PDP L  V++P+   ++ +  L D M   MY+ +GIGLAA Q+ V  RLVVID
Sbjct: 3   PLTILRYPDPRLHTVAKPVAAFDARLRQLADAMFHTMYAAEGIGLAATQVDVHERLVVID 62

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + +   R  P+V INP+I+  S +  +  EGCLS+P     V+R+  + V  +D N Q Q
Sbjct: 63  VSEG--RNQPLVLINPEIVWASAETRIGDEGCLSVPGIYDGVERALAVKVAALDLNGQKQ 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K
Sbjct: 121 LHEAEGMLAVCIQHEMDHLIGKVFVEYLSPLKRNRIKTKLIK 162


>gi|332285819|ref|YP_004417730.1| peptide deformylase [Pusillimonas sp. T7-7]
 gi|330429772|gb|AEC21106.1| peptide deformylase [Pusillimonas sp. T7-7]
          Length = 170

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 109/160 (68%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P+++++  I  L+ +M E MY   G+GLAA Q+ V  R+VVID+ 
Sbjct: 5   PILRYPDPRLHKVAKPVQEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +  +  + +V INP+I+  SD+  VY+EGCLS+P    +V+RSA I VR ++   +    
Sbjct: 65  EDGN--DLIVLINPEILWKSDEVQVYEEGCLSVPGVYDEVERSARIRVRALNEQGEPYEF 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLA C+QHELDHL G +F+++LS LK++ I  ++ K
Sbjct: 123 DAEGLLAVCVQHELDHLLGKVFVEYLSVLKQNRIKTRLRK 162


>gi|269958379|ref|YP_003328166.1| peptide deformylase [Anaplasma centrale str. Israel]
 gi|269848208|gb|ACZ48852.1| peptide deformylase [Anaplasma centrale str. Israel]
          Length = 199

 Score =  140 bits (353), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 109/180 (60%), Gaps = 23/180 (12%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-----IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           PLV  PD    R+S   E++++D     +  L ++ML+ MY   GIGLAAVQ+GV  R+ 
Sbjct: 16  PLVTLPDS---RLSLCSEEVHADDFGQQLETLANDMLDTMYHNKGIGLAAVQVGVHKRIF 72

Query: 60  VIDLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           V+DL+  + R                 P V +NP I+  S+     +EGCLS+PDYR  V
Sbjct: 73  VVDLEYGSDRYEVPRDDGAGEFRATCGPTVVVNPVIVEESERLVAMEEGCLSVPDYRETV 132

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +R   I V+Y+D N + + I A GLLA CLQHELDHLNG++F+  +S+LKRDM+ +K+ +
Sbjct: 133 RRPESIVVQYVDLNRRQKYIKACGLLARCLQHELDHLNGVVFLQRISKLKRDMVMEKIRR 192


>gi|268593574|ref|ZP_06127795.1| peptide deformylase [Providencia rettgeri DSM 1131]
 gi|291310851|gb|EFE51304.1| peptide deformylase [Providencia rettgeri DSM 1131]
          Length = 173

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR +++P++K+++ I  ++D+M + MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   YPDERLRTIAKPVDKVDASIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R + +V INP+++  S +  + +EGCLSIP+    V R+  + VR ++ N +   + ADG
Sbjct: 67  RDDRLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEQVKVRALNYNGESFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +LR
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166


>gi|212709012|ref|ZP_03317140.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM
           30120]
 gi|212688378|gb|EEB47906.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM
           30120]
          Length = 173

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 107/161 (66%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR V++P+EK+++ I  +ID+M + MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   YPDERLRTVAKPVEKVDASIQRIIDDMFDTMYDEEGIGLAATQVDIHQRIIVIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++    +  + +EGCLS+P+    V R+  + VR ++ N     + ADG
Sbjct: 67  RNERLVLINPELLNKEGETGI-EEGCLSVPEQHGFVPRAEKVKVRALNYNGDAFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +LR
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166


>gi|254491036|ref|ZP_05104217.1| peptide deformylase [Methylophaga thiooxidans DMS010]
 gi|224463549|gb|EEF79817.1| peptide deformylase [Methylophaga thiooxydans DMS010]
          Length = 167

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 101/156 (64%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR+ + PI  +N  I  L D+MLE MY   GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDPRLRKKAEPITDVNDKIRQLADDMLETMYDAPGIGLAATQVNIQKRILVIDISED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           + +P+V INP+I+    +   ++EGCLS+P+    V R+  + ++ ++   +      DG
Sbjct: 67  KSDPLVLINPEIVAAEGERE-FEEGCLSVPEAYEAVIRADKVKIKAVNLQGEDFEFTTDG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLATC+QHE+DHL+G LF+D+LS LKR  I K++ K
Sbjct: 126 LLATCVQHEIDHLDGKLFVDYLSNLKRQRIKKRLEK 161


>gi|37528512|ref|NP_931857.1| peptide deformylase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|39930823|sp|Q7MYI2|DEF_PHOLL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|36787950|emb|CAE17067.1| polypeptide deformylase (PDF) (formylmethionine deformylase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 170

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 107/157 (68%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR ++ P+E ++++I  +ID+M E MY+ +GIGLAA Q+ +  R+VVID+ +   
Sbjct: 9   YPDERLRTIATPVETVDAEIRRIIDDMFETMYAEEGIGLAATQVDIHQRIVVIDVSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + ++ +D N +   + AD 
Sbjct: 67  RNERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIKALDYNGRPFELQADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL
Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKL 162


>gi|170718226|ref|YP_001785248.1| peptide deformylase [Haemophilus somnus 2336]
 gi|189083072|sp|B0UWZ5|DEF_HAES2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|168826355|gb|ACA31726.1| peptide deformylase [Haemophilus somnus 2336]
          Length = 170

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 103/160 (64%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ V+ P+   + ++   IDNM E MY  +GIGLAA Q+ V  R++ ID++ 
Sbjct: 6   VLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N +V INPKI+    +  + +EGCLS+P  R  V R   + V+  +   +  ++ 
Sbjct: 65  -GTKENQIVLINPKILESFGETGI-EEGCLSLPGLRGFVPRKETVKVKAQNRQGEEFMLD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGLLA C+QHE+DHLNGI+F DHLS LKR  + +K+ KL
Sbjct: 123 ADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKL 162


>gi|260774331|ref|ZP_05883246.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
 gi|260611292|gb|EEX36496.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
          Length = 171

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 110/163 (67%), Gaps = 5/163 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP L+  +  ++ I S +  LID+MLE +YSTD GIGLA+VQ+G    +V+IDL 
Sbjct: 6   ILTAPDPRLKITAEKVQDIES-VQKLIDDMLETLYSTDNGIGLASVQVGRKEAVVIIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D+  R  P++ INP++++ S+  ++ QEGCLS+PDY A+V+R   + V  +D   Q   I
Sbjct: 65  DN--RDQPLILINPEVVSGSNK-ALGQEGCLSVPDYYAEVERYTSVVVSALDRTGQRITI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +D  LA  +QHE+DHL+G LFID++S LKR M  KK+ K V+
Sbjct: 122 ESDDFLAIVMQHEIDHLSGNLFIDYISPLKRQMAMKKVKKYVK 164


>gi|323141161|ref|ZP_08076062.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
 gi|322414304|gb|EFY05122.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
          Length = 160

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 96/148 (64%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +VI   P+LR V++P+E+I+  +  L+ +M E MYS DG+GLAA Q+GV  R+VV
Sbjct: 1   MAKLKIVIAGAPVLREVAQPVERIDKKLQRLLRDMAETMYSADGVGLAAPQVGVSKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +       INP+I+       +  EGCLS+PDY  +V+RS ++   + D   Q
Sbjct: 61  IDVGEGLYE-----LINPEIVKREGKV-LGSEGCLSVPDYEGEVERSEYVECEFTDKTGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
             ++ A GLLA C+QHELDHL+GILFID
Sbjct: 115 RMLLSASGLLAICIQHELDHLDGILFID 142


>gi|253997897|ref|YP_003049960.1| peptide deformylase [Methylovorus sp. SIP3-4]
 gi|313199962|ref|YP_004038620.1| peptide deformylase [Methylovorus sp. MP688]
 gi|253984576|gb|ACT49433.1| peptide deformylase [Methylovorus sp. SIP3-4]
 gi|312439278|gb|ADQ83384.1| peptide deformylase [Methylovorus sp. MP688]
          Length = 166

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 107/157 (68%), Gaps = 5/157 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L  V++P++++N++I  LID+M E MY+  GIGLAA Q+ V  +++V+DL +   
Sbjct: 9   YPDPRLYTVAKPVKEVNANIRRLIDDMAETMYAAPGIGLAATQVDVHQQIIVMDLSEA-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINPKI T       Y+EGCLS+P    +V R+A +TV  +D N +  ++ A 
Sbjct: 67  -KNELRVFINPKI-TAKCGAQDYEEGCLSVPGIYENVTRAAEVTVEALDRNGEPFVLEAQ 124

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           GLLA C+QHE+DHL G +F+D+LS LK++ I  K+ K
Sbjct: 125 GLLAVCIQHEMDHLLGKVFVDYLSPLKQNRIKTKLKK 161


>gi|330881833|gb|EGH15982.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 136

 Score =  140 bits (353), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 2/136 (1%)

Query: 33  DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQE 92
           D+M E MY   GIGLAA Q+ V  R+VV+DL +   R  PMVFINP+I   +D+   YQE
Sbjct: 1   DDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED--RSEPMVFINPEIEKLTDEMDQYQE 58

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           GCLS+P +  +V R   + V+ +D N +   + A+GLLA C+QHE DHLNG LF+D+LS 
Sbjct: 59  GCLSVPGFYENVDRPQKVRVKALDRNGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSN 118

Query: 153 LKRDMITKKMSKLVQL 168
           LKRD I KK+ K  +L
Sbjct: 119 LKRDRIKKKLEKQHKL 134


>gi|317494307|ref|ZP_07952721.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917557|gb|EFV38902.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 169

 Score =  140 bits (353), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 110/157 (70%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR V++P++++  +I  ++D+M + MY+ +GIGLAA Q+ V  R++VID+ ++  
Sbjct: 9   FPDERLRTVAQPVKEVTPEIQRIVDDMFDTMYAEEGIGLAATQVDVHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP++++ SD  +  +EGCLS+P++RA V R+  + +R +D + +   + AD 
Sbjct: 67  RDQRLVLINPELLS-SDGETGIEEGCLSVPEHRALVPRAERVKIRALDRDGKPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL
Sbjct: 126 LLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKL 162


>gi|94312496|ref|YP_585706.1| peptide deformylase [Cupriavidus metallidurans CH34]
 gi|93356348|gb|ABF10437.1| formylmethionine deformylase [Cupriavidus metallidurans CH34]
          Length = 168

 Score =  140 bits (353), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L +V++P+E ++  I  L+ +M E MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLDILTYPDPRLHKVAKPVEVVDDRIRQLVKDMAETMYEAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   MVFINP++   S++  V++EGCLS+P+    V+R   + VR +D   +
Sbjct: 61  IDISES--RDELMVFINPEVTWASENRKVWEEGCLSVPEVYDRVERPDRVKVRALDEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL+G +F+++LS LK   I  K+ K V+ R
Sbjct: 119 AFELDADDLLAVCIQHEIDHLDGKVFVEYLSPLKLQRIKSKLQKRVRSR 167


>gi|152994060|ref|YP_001338895.1| peptide deformylase [Marinomonas sp. MWYL1]
 gi|150834984|gb|ABR68960.1| peptide deformylase [Marinomonas sp. MWYL1]
          Length = 181

 Score =  140 bits (352), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 104/160 (65%), Gaps = 2/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR++++PI K   ++   ID+ML+ MY  +G+GLAA Q+   +RLVV+D  +   
Sbjct: 19  YPDKRLRKIAKPITKFTDELQTKIDDMLDTMYDENGLGLAATQVDYHHRLVVMDFSEE-- 76

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P+VFINP+     D+ + +QEGCLS+P +   + R+A + V+ +D N +   +  D 
Sbjct: 77  RNEPIVFINPEFEVLDDEPNEFQEGCLSVPGFYEHIYRAAKVRVKALDRNGKPFTLEVDE 136

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           L+A C+QHE+DHL+G L +D+L+ LKR+ I  K+ K  +L
Sbjct: 137 LMAVCVQHEVDHLDGKLMVDYLTPLKRNRIKSKLEKAHKL 176


>gi|149375618|ref|ZP_01893387.1| polypeptide deformylase [Marinobacter algicola DG893]
 gi|149360020|gb|EDM48475.1| polypeptide deformylase [Marinobacter algicola DG893]
          Length = 167

 Score =  140 bits (352), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 100/157 (63%), Gaps = 2/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP LR +++P++++  +   LID+M E MY   GIGLAA Q+ V  +++V+DL +   
Sbjct: 8   YPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVMDLSED-- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP++     +    QEGCLS+P +  DV R     +R +  + +   I A G
Sbjct: 66  KSEPRVFINPEVEVLEGELEEMQEGCLSVPGFYEDVSRIEHCMIRAIGRDGKPFEIEARG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHLNG LF+D+LS LKR  I KK+ KL
Sbjct: 126 LLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKL 162


>gi|269468439|gb|EEZ80104.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster
           bacterium]
          Length = 185

 Score =  140 bits (352), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 111/182 (60%), Gaps = 20/182 (10%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP LR  ++ ++ +N     L+ NM E MY+ DGIGLAA QI    ++VV+D+ 
Sbjct: 4   PILHYPDPRLRTKAKEVDAVNDKTRILVKNMFETMYAEDGIGLAATQINQHLQIVVMDVP 63

Query: 65  DH--------AHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           D          +RKN           P+ FINPKI T S     + EGCLS+P ++A+V+
Sbjct: 64  DSQDDYELLLKNRKNDSDKETNIQHHPLCFINPKITTISG-HEKHIEGCLSVPGFQAEVE 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           RS  IT+  ++   +   ++A  LLA C+QHELDHL GILF+D+LS+LK+  + +K  K+
Sbjct: 123 RSNQITIEALNEQGESFTLHASNLLAVCIQHELDHLKGILFVDYLSKLKQKRLLEKTKKV 182

Query: 166 VQ 167
           ++
Sbjct: 183 IK 184


>gi|21672742|ref|NP_660809.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008354|sp|Q8K975|DEF_BUCAP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21623388|gb|AAM68020.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 167

 Score =  140 bits (352), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 3/148 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR +++P+EKI  +I  + +NM++ MY  +GIGLAA Q+ +  +++VI  + HA 
Sbjct: 9   YPDQRLRLIAKPVEKITKEIYKITNNMIDTMYQEEGIGLAATQVNIQLQIIVIH-KIHAI 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            KN ++ INPKII      S+ +EGCLSIP+YRA V R  +I ++ ++ N     I AD 
Sbjct: 68  EKN-LILINPKIIEKKGSISI-EEGCLSIPEYRAFVPRFNYIKIQAINLNGNTVEIEADS 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRD 156
           +L+ C+QHE+DHLNG LFID+LS LKR+
Sbjct: 126 ILSICIQHEIDHLNGKLFIDYLSELKRE 153


>gi|218710998|ref|YP_002418619.1| peptide deformylase [Vibrio splendidus LGP32]
 gi|218324017|emb|CAV20379.1| Peptide deformylase [Vibrio splendidus LGP32]
          Length = 206

 Score =  139 bits (351), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 105/165 (63%), Gaps = 3/165 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VVID+ +
Sbjct: 42  VLTLPDNRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDISE 101

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP+I     +  + +EGCLS+P  RA V R+A +TV+ +D         
Sbjct: 102 T--RDEPMVLINPEITDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDREGNEFTFD 158

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 159 ADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 203


>gi|325294662|ref|YP_004281176.1| peptide deformylase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065110|gb|ADY73117.1| Peptide deformylase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 177

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 3/160 (1%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           I+PD +L++ +  + + N ++  L+++M E MY   G+GLAA QIG+L ++VVIDL    
Sbjct: 7   IYPDDVLKKKAEVVTEFNEELEQLVNDMFETMYKRGGVGLAANQIGILKKVVVIDLHSGK 66

Query: 68  HR--KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            +  K  ++ INP+I+    +  V +EGCLS+P     VKR+A+  V+  +   +  II 
Sbjct: 67  EKQGKEQIILINPEIVALEGE-EVKEEGCLSLPGLYKKVKRAAYAKVKAQNLKGEEFIIE 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +GLLA   QHE+DHLNGI+FID LS L+R +  +K  KL
Sbjct: 126 GEGLLARAFQHEIDHLNGIVFIDRLSPLQRRLALEKYKKL 165


>gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1]
 gi|300076747|gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +++ P+   +  I  L+ +M E MY+  G+GLAA Q+ V  ++VVID+ D   
Sbjct: 9   YPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVVIDVSDDG- 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            KN  VFINP+I+  S+D  VY EGCLS+P     V+R A + VR  D + +   + AD 
Sbjct: 68  -KNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAFEVDADE 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LKR+ I  K+ K
Sbjct: 127 LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQK 162


>gi|290477161|ref|YP_003470076.1| peptide deformylase [Xenorhabdus bovienii SS-2004]
 gi|289176509|emb|CBJ83318.1| peptide deformylase [Xenorhabdus bovienii SS-2004]
          Length = 170

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR +++P+EK+++ I ++ID+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   YPDERLRTIAKPVEKVDAGIQSIIDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++       + +EGCLS+P+ RA V R   + ++ +D + Q   + AD 
Sbjct: 67  RDQRLVLINPELMNEVGATGI-EEGCLSVPEQRAFVPRFEQVKIKALDYHGQQFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LFID+LS LKR  I +K+ K+ +LR
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKVEKIDRLR 166


>gi|260465452|ref|ZP_05812642.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
 gi|259029756|gb|EEW31042.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
          Length = 166

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP+P+LR V+ P++  +SD+  L  ++++ M++  GIG+    IG+L RLVV
Sbjct: 1   MAVRPIIRFPNPLLRAVAEPVKLFDSDLHGLAGDLVDTMHAAPGIGITGPHIGILRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I L   A    P +++NP I+  S +   + EG +S+P    D++R A I VRY D +  
Sbjct: 61  IQLPSAA---KPGIYVNPSIVHASTEMIRHAEGSVSMPGVTEDIERHARIIVRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   ADGLLA C QHE+D L+G+ +   L+RLKRD + K+  KL++
Sbjct: 118 EQFENADGLLAVCHQHEIDQLDGLFWTHRLTRLKRDRLVKRYGKLMR 164


>gi|238783197|ref|ZP_04627223.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970]
 gi|238715993|gb|EEQ07979.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970]
          Length = 170

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 110/160 (68%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++VID+ ++  
Sbjct: 9   YPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   +  D 
Sbjct: 67  RDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELETDD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|257091704|ref|YP_003165345.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257044228|gb|ACV33416.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 167

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 3/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FPDP LR+V+  ++KI+  I  L  +M E MY   GIGLAA Q+ V  R++V+D  
Sbjct: 5   PILRFPDPRLRKVAARVDKIDDGIRRLARDMAETMYEAPGIGLAATQVDVHARVIVVDAS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R   +  INP+I+   D   V +EGCLS+P     V+R+  + VRY D +   Q +
Sbjct: 65  ET--RDQLLTLINPEILQ-QDGLQVCEEGCLSVPGVYDKVERAEHVVVRYQDLDGAEQTV 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A GLLA CLQHE+DHL G +F++HLS+LK+  I  K++K
Sbjct: 122 DATGLLAVCLQHEIDHLQGRVFVEHLSQLKQLRIRNKLAK 161


>gi|71279368|ref|YP_266802.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
 gi|71145108|gb|AAZ25581.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
          Length = 171

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR  ++P+  I      +ID+ML  MY  +G+GLAA Q+ +  R+VV+D  +   
Sbjct: 9   FPDPRLRTKAQPVTDITDATATIIDDMLATMYEENGVGLAATQVDIHQRIVVMDTSED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P++FINP+II  S++ S+ +EGCLS+P   A V R    TV+ +D + +   + A  
Sbjct: 67  NDQPIIFINPEIIATSNETSINEEGCLSVPGTYAKVDRHDACTVKALDRHGKEFSLNATE 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           L + C+QHELDHL G+LF+D+LS LKR  I KK+ K
Sbjct: 127 LQSICIQHELDHLKGVLFVDYLSPLKRQRIQKKLEK 162


>gi|145590257|ref|YP_001156854.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048663|gb|ABP35290.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 171

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 108/159 (67%), Gaps = 2/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PD  L +V++P+ ++++ I  ++ +M + MY   G+GLAA Q+ +  R+VVID+ D
Sbjct: 6   VLCYPDQRLHKVAKPVAQVDARIQKIVADMADTMYDAPGVGLAATQVDIHERIVVIDVSD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   MVFINP+I+  S +   ++EGCLS+P++  +V+R A I V+ ++   +   + 
Sbjct: 66  D--QNELMVFINPEIVWASPEKKSWREGCLSVPEFYDEVERPAEIRVKALNLKGEEFELE 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA CLQHELDHL G +F+++LS LK+  I++KM K
Sbjct: 124 ADGLLAVCLQHELDHLQGKVFVEYLSMLKQVRISQKMKK 162


>gi|220933382|ref|YP_002512281.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767610|sp|B8GU11|DEF_THISH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219994692|gb|ACL71294.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 178

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 114/167 (68%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR+ + P++K++ +I  L+D+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MAKLEILHFPDPRLRKRAVPVDKVDDEIRRLVDDMFETMYDAPGIGLAATQVNVQRQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  +  P+VFINP+I+    +  + QEGCLS+P Y   V+R+  + VR +D N +
Sbjct: 61  IDVSENNDQ--PLVFINPEILDRVGEEEM-QEGCLSVPGYFETVRRADRVRVRALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ KL +
Sbjct: 118 PFELETDGLLAVCIQHEMDHLDGKLFVDYLSPLKRNRIQKKLEKLTR 164


>gi|221135272|ref|ZP_03561575.1| peptide deformylase [Glaciecola sp. HTCC2999]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 103/159 (64%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR  ++P+  IN  I  L+ +M E M +  G+GLAA Q+ V  +++V+D+ D
Sbjct: 6   VLTFPDERLRTKAKPVNDINDSIRTLVADMFETMKAERGVGLAATQVNVHQQVIVMDVSD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +  P+VFINPK+I       + +EGCLS+P+  A V+R+ +I V  ++ + +   + 
Sbjct: 66  D--QDTPLVFINPKVIE-QRGTKINEEGCLSVPNNYAKVERAEWIKVSALNEHGEEFTME 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A+GLLA C+QHE+DHL G LF+D+LS LKR  I KK+ K
Sbjct: 123 AEGLLAVCIQHEMDHLQGKLFVDYLSSLKRQRIMKKLEK 161


>gi|157375143|ref|YP_001473743.1| peptide deformylase [Shewanella sediminis HAW-EB3]
 gi|157317517|gb|ABV36615.1| Peptide deformylase [Shewanella sediminis HAW-EB3]
          Length = 163

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R ++P++ I S +   ID++L+ MY T DGIGLAA Q+G L+ ++VIDL 
Sbjct: 6   ILTIPDERLKRKAQPVKDIES-VQGFIDDLLDTMYDTEDGIGLAATQVGSLHAILVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               R  P V INP+II    DF V +EGCLSIP YRA V RS  + ++ +D       I
Sbjct: 65  --PERDQPQVLINPEIIEAEGDF-VGEEGCLSIPGYRAKVTRSEKVKIKALDRTGTPFEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D  LA  +QHE++HL G++F DHLS+LK+ +  KK+SK
Sbjct: 122 ETDTFLAIVIQHEMEHLQGVVFTDHLSKLKQQIALKKVSK 161


>gi|124265476|ref|YP_001019480.1| peptide deformylase [Methylibium petroleiphilum PM1]
 gi|124258251|gb|ABM93245.1| peptide deformylase [Methylibium petroleiphilum PM1]
          Length = 170

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L  V++P+++++  +  L+D+MLE MY   G+GLAA Q+ V  R++VID+ D   
Sbjct: 9   YPDPRLHTVAKPVKEVDERVRQLVDDMLETMYDAQGVGLAATQVDVHERVIVIDVSDD-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P V INP+++  SD+  V  EGCLS+P     V R A +TVR +  + Q     A+ 
Sbjct: 67  RNEPRVLINPELLQVSDEMVVGDEGCLSVPQIYDKVPRHAKVTVRALGRDGQAYQFDAEE 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LL+ C+QHE+DHL G +F+++LS LKR+ I  KM K
Sbjct: 127 LLSVCVQHEMDHLMGKVFVEYLSPLKRNRIKSKMLK 162


>gi|146313352|ref|YP_001178426.1| peptide deformylase [Enterobacter sp. 638]
 gi|167012063|sp|A4WF95|DEF_ENT38 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145320228|gb|ABP62375.1| peptide deformylase [Enterobacter sp. 638]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 112/161 (69%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + AD 
Sbjct: 67  REERLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKSFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL ++R
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 166


>gi|73666676|ref|YP_302692.1| peptide deformylase [Ehrlichia canis str. Jake]
 gi|72393817|gb|AAZ68094.1| peptide deformylase [Ehrlichia canis str. Jake]
          Length = 185

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 102/175 (58%), Gaps = 14/175 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L   S  + +++  +  L+D+M E M+   G+GLAAVQ+G+  R++V+D+ 
Sbjct: 5   PIVTVPDKRLSLCSEEVREVDQSVKKLVDDMFEAMHVNKGVGLAAVQVGIHKRVLVVDVP 64

Query: 65  DHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +     +              P   INPKI+  S +    +EGCLS+PDY   V R  ++
Sbjct: 65  EEFRETDDITSQIEGYELCGGPYCIINPKIVDASQEKVTLREGCLSVPDYFDYVVRPQYV 124

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           TV+Y+D N    II A G LA CL+HE+DHLNGI+F+ +LS+ KRD    K+ K+
Sbjct: 125 TVQYLDYNGNECIIKAQGWLARCLEHEIDHLNGIVFLKYLSKFKRDFAIGKVKKM 179


>gi|225024414|ref|ZP_03713606.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC
           23834]
 gi|224942795|gb|EEG24004.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC
           23834]
          Length = 167

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 99/157 (63%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   YPDPRLNLVAKPVEQVDERIKQLVADMAETMYEAKGIGLAATQVDVHERVVVMDLSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    V INP II   D  ++Y+EGCLS+P     V R+  I    +D   +   I+ADG
Sbjct: 67  RDQLQVLINPVIIE-RDGETIYEEGCLSVPGVYDKVTRAESIVAEALDAEGKPYTIHADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           L A C+QHE+DHL+G +F+ +LSRLK++ I  KM KL
Sbjct: 126 LQAICIQHEIDHLDGKVFVQYLSRLKQERIKTKMKKL 162


>gi|319788404|ref|YP_004147879.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466916|gb|ADV28648.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
          Length = 180

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 7/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++   DP+LR+ S  IE I+  + +L+ +MLE M   DG GLAAVQIG L R++V
Sbjct: 1   MAIRPILPITDPLLRQKSAEIETIDDSVRDLVSDMLETMQDADGAGLAAVQIGELRRILV 60

Query: 61  IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMD 116
            D+   + HA  K   VFINP+II  SD+    + EGCLS+P+    V R+  + VR+ D
Sbjct: 61  ADIPLDEPHASHK---VFINPEIIWQSDEIQELEGEGCLSMPEIYFTVPRALEVKVRFTD 117

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +A    ++A+G  A C QHE+DHLNGI  IDH+S LKRD    K  K +++
Sbjct: 118 LDAVTHEVHAEGFSAVCFQHEIDHLNGIRQIDHVSSLKRDKFLAKFRKYLRI 169


>gi|308272079|emb|CBX28687.1| Peptide deformylase [uncultured Desulfobacterium sp.]
          Length = 177

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 100/159 (62%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PD  L   ++P++ IN+D+  +ID+M+E MY   GIGLA++QIG    ++V D+  
Sbjct: 12  ILTYPDRFLTNTAKPVKGINADLQKIIDDMIETMYDAPGIGLASIQIGCDKSMIVYDIDQ 71

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++  V +NP II    +     EGCLS+PD R+DVKR+A + V  +D       I 
Sbjct: 72  TEHKRSIQVLLNPVIIETDGEIVSNNEGCLSVPDLRSDVKRAASVIVEALDREGNPLKIE 131

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A   LA  LQHE+DHLNG+LF+D +S LKR++  + + K
Sbjct: 132 AHDQLAVVLQHEIDHLNGVLFLDRISTLKRELYKRHVKK 170


>gi|162452083|ref|YP_001614450.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56']
 gi|161162665|emb|CAN93970.1| Polypeptide deformylase [Sorangium cellulosum 'So ce 56']
          Length = 170

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +PDP LR+ ++P+ +I+ +I  LID+M E MY+  G+GLAA QIG  +R+ +
Sbjct: 1   MAIRTILHYPDPRLRQKAQPVGEISPEITKLIDDMAETMYAAPGVGLAATQIGEPHRVFL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+       N +VFINP+I+      +   EGCLS P    D+KR+  +TVR    +  
Sbjct: 61  VDIAADDEPSNLLVFINPEIVRQEGQLT-GPEGCLSFPGISEDIKRAERVTVRARGRDGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I ADGLLA  +QHELDHL+G+L ID +  LK+ ++ +KM K
Sbjct: 120 TFEIAADGLLAVAIQHELDHLDGVLMIDRMGTLKKRIVQRKMQK 163


>gi|322434765|ref|YP_004216977.1| peptide deformylase [Acidobacterium sp. MP5ACTX9]
 gi|321162492|gb|ADW68197.1| peptide deformylase [Acidobacterium sp. MP5ACTX9]
          Length = 188

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP+L +    +   +  +  L+D M E MY   GIGLAA QIG+  R+ VID+    +
Sbjct: 27  WPDPVLAKKGVEVTAFDDRLKTLVDEMFESMYEAQGIGLAAPQIGISERITVIDVSFKKN 86

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            K+ +  INP II  ++   V +EGCLS+PD R  V R+ ++ V+  D       +  D 
Sbjct: 87  PKDRLALINPVIIE-AEGKQVEEEGCLSLPDIREKVSRAGWVKVKAQDVTGTWFEVEGDE 145

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA  LQHE+DHL+G+LFID +SRLKR+++ +K+ K+
Sbjct: 146 LLARALQHEIDHLDGVLFIDRISRLKRELVLRKIKKM 182


>gi|255020222|ref|ZP_05292291.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
 gi|254970364|gb|EET27857.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
          Length = 168

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 105/159 (66%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PD  L++ + PI +I+ DI  L D+M E MY+  GIGLAA+Q+    RL+V+D+ +
Sbjct: 6   IVEYPDVRLKQEAAPIARIDRDIEALADDMAETMYAAPGIGLAAIQVAAPQRLIVVDVSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R   +  +NP+II  S +  + QEGCLS+P     V+R+  + VR +D   +   + 
Sbjct: 66  A--RNELLTLVNPEIIESSGEEEM-QEGCLSVPGVLETVRRAERVKVRALDLRGKTLELE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA CLQHE+DHLNG LF+DHLSRLK+++I +K  K
Sbjct: 123 ADGLLAVCLQHEIDHLNGTLFVDHLSRLKQNLIRRKAEK 161


>gi|269214256|ref|ZP_06158455.1| peptide deformylase [Neisseria lactamica ATCC 23970]
 gi|269210257|gb|EEZ76712.1| peptide deformylase [Neisseria lactamica ATCC 23970]
          Length = 181

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV+DL ++  
Sbjct: 23  YPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVVMDLSEN-- 80

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 81  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 139

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 140 LLAICVQHELDHLMGIVFVERLSQLKQSRIKTKLKK 175


>gi|91774543|ref|YP_544299.1| peptide deformylase [Methylobacillus flagellatus KT]
 gi|91708530|gb|ABE48458.1| peptide deformylase [Methylobacillus flagellatus KT]
          Length = 167

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 104/159 (65%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP L +V+ P+E++N DI  L+ +M E MY+  GIGLAA Q+ V  +++VIDL +
Sbjct: 6   ILTYPDPRLHKVAAPVEEVNDDIRQLVRDMAETMYAAPGIGLAATQVDVHKQVIVIDLSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +    VFINPKI++       Y+EGCLS+P     V R+A +TV  +D + +   + 
Sbjct: 66  D--KSALQVFINPKIVSQCGSQE-YEEGCLSVPGIYEPVTRAAEVTVEALDEHGKPFTLK 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHL G +F+++LS LK+  I  K+ K
Sbjct: 123 ADGLLAVCIQHEIDHLLGKVFVEYLSSLKQTRIKNKLKK 161


>gi|319778670|ref|YP_004129583.1| Peptide deformylase [Taylorella equigenitalis MCE9]
 gi|317108694|gb|ADU91440.1| Peptide deformylase [Taylorella equigenitalis MCE9]
          Length = 169

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 109/160 (68%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L+++++ ++ ++  I  ++++M E MY+ +G+GLAA Q+ +  R+VVID+ 
Sbjct: 5   PILKYPDPRLKKIAKDVDVVDESIKKIVEDMAETMYAANGVGLAATQVDIHKRIVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R + +V INP+II  S++  +++EGCLS+P    +V+R + + V+ +D N      
Sbjct: 65  EE--RNDLLVLINPEIIGISEEKVIHEEGCLSVPTIYDNVERFSEVRVKALDQNGNAFEF 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHELDHL G +F++ LS LK++ I  K+ K
Sbjct: 123 KADGLLAICVQHELDHLMGKVFVEKLSALKQNRIKTKLKK 162


>gi|171909540|ref|ZP_02925010.1| peptide deformylase [Verrucomicrobium spinosum DSM 4136]
          Length = 192

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 110/177 (62%), Gaps = 16/177 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+VI+ DP+LR   +PI ++  +I  L  +M+E M++  G+GLAA Q+G+  +L VI++ 
Sbjct: 4   PIVIYGDPVLRVKCKPITEVTEEIRKLSQDMIETMHNARGVGLAAPQVGIALQLAVIEVP 63

Query: 65  DHAH-----RKN----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
                    R N          P++F+NPK+     + ++ +EGCLSIPD R++V+RSA 
Sbjct: 64  PDDESVTYVRLNGEDTPLAEAMPLIFLNPKL-DHGKEKAMGEEGCLSIPDLRSEVRRSAG 122

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           + V Y   + + + I ADGLLA  LQHE+DHLNGILFID LS   +  + +K+ +L+
Sbjct: 123 VKVEYQTLDGETRTIEADGLLARALQHEIDHLNGILFIDRLSAAAKLGVRRKLKRLM 179


>gi|328952875|ref|YP_004370209.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109]
 gi|328453199|gb|AEB09028.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109]
          Length = 167

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 97/149 (65%), Gaps = 1/149 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P+ +L+  + P+ +I  DI  LID+M   MY+  GIGLAA Q+G L R+++ D+     
Sbjct: 9   YPESVLKEKALPVTEITEDIQRLIDDMAATMYNAPGIGLAANQVGALQRVIIFDITPKNE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            +   V INP+II  ++   VYQE CLS+ DY ADV+R A +    +D N +   I A+ 
Sbjct: 69  GRKLNVLINPEIIA-AEGAQVYQEACLSVLDYAADVRRKARVLATGLDRNGKEVRIEAED 127

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDM 157
           LLA  LQHE+DHL+GILFID +SRLKR++
Sbjct: 128 LLAVVLQHEIDHLDGILFIDRISRLKRNL 156


>gi|225874677|ref|YP_002756136.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
 gi|254767569|sp|C1F541|DEF_ACIC5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225792384|gb|ACO32474.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
          Length = 170

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+ +P+V +PDP+L++ + P+ + N ++  L+D+M E MY   GIGLAA QIG+  RL V
Sbjct: 1   MMIRPIVKYPDPVLQQPAEPVTEFNEELRALVDDMFESMYEAKGIGLAAPQIGISKRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL    +    +V INP+II   +     +EGCLS+PD R  V R+  +TVR  + + +
Sbjct: 61  IDLSFKENPDEKIVLINPEII-HREGRQYEEEGCLSLPDIREKVVRAEKVTVRAQNLDGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              +  + LL+   QHE+DHL+G+LFI  +S LKRD++ +++ K+
Sbjct: 120 WFEMDGEELLSRAFQHEIDHLDGVLFIFRISALKRDLVLRRIRKM 164


>gi|293602354|ref|ZP_06684800.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
 gi|292819116|gb|EFF78151.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
          Length = 170

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 105/160 (65%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VVID+ 
Sbjct: 5   PILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           + ++    +  INP+I   SDD  +Y+EGCLS+P    +V+R++ I  + +D + +    
Sbjct: 65  EDSN--ELLALINPEITWRSDDHKIYEEGCLSVPGIYDEVERASRIRCKALDIDGKPFEF 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHELDHL G +F+++LS LK++ I  K+ K
Sbjct: 123 EADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKK 162


>gi|113460190|ref|YP_718247.1| peptide deformylase [Haemophilus somnus 129PT]
 gi|123131908|sp|Q0I181|DEF_HAES1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|112822233|gb|ABI24322.1| peptide deformylase [Haemophilus somnus 129PT]
          Length = 170

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 103/160 (64%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ V+ P+   + ++   IDNM E MY  +GIGLAA Q+ V  R++ ID++ 
Sbjct: 6   VLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIITIDIE- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N +V INP+I+    +  + +EGCLS+P  R  V R   + V+  +   +  ++ 
Sbjct: 65  -GTKENQIVLINPEILESFGETGI-EEGCLSLPGLRGFVPRKETVKVKAQNRQGEDFMLD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGLLA C+QHE+DHLNGI+F DHLS LKR  + +K+ KL
Sbjct: 123 ADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKL 162


>gi|126209175|ref|YP_001054400.1| peptide deformylase [Actinobacillus pleuropneumoniae L20]
 gi|165977146|ref|YP_001652739.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|126097967|gb|ABN74795.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
 gi|165877247|gb|ABY70295.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 154

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/147 (44%), Positives = 98/147 (66%), Gaps = 3/147 (2%)

Query: 19  RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINP 78
            P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ ID++    + N +V INP
Sbjct: 3   EPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVITIDIE--GDKTNQVVLINP 60

Query: 79  KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHEL 138
           +I+    +  + +EGCLSIP +RA V R   + V+ ++   +  I  ADGL A C+QHE+
Sbjct: 61  EILESCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGEEVIYEADGLFAICIQHEI 119

Query: 139 DHLNGILFIDHLSRLKRDMITKKMSKL 165
           DHLNG+LF+DH+S LKR  I +KM KL
Sbjct: 120 DHLNGVLFVDHISALKRQRIKEKMQKL 146


>gi|158522244|ref|YP_001530114.1| peptide deformylase [Desulfococcus oleovorans Hxd3]
 gi|238686886|sp|A8ZUK5|DEF_DESOH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158511070|gb|ABW68037.1| peptide deformylase [Desulfococcus oleovorans Hxd3]
          Length = 173

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 102/162 (62%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P  +L+  + P+  I+  +  LID+M + MY+  G+GLAAVQ+    RLV+ D+ D
Sbjct: 6   IVTYPADVLKDGALPVANIDGKLQQLIDDMAQTMYAHQGVGLAAVQVDSGLRLVIYDVSD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++   V INP+++    +    QEGCLS+P+ R DVKR+A + V  +D   +  +I 
Sbjct: 66  QREKQQFRVVINPEVVAVDGECVSEQEGCLSVPELRTDVKRAATVRVEGVDREGRPLVID 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           A+GL A  LQHE+DHLNG L +D  SRLKR++  +K+ K ++
Sbjct: 126 AEGLEAIVLQHEIDHLNGTLILDRASRLKRELYKRKVQKRIK 167


>gi|304388911|ref|ZP_07370958.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
 gi|304337045|gb|EFM03232.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
 gi|316985956|gb|EFV64895.1| peptide deformylase [Neisseria meningitidis H44/76]
          Length = 181

 Score =  137 bits (346), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E+++  I  LI +M E MY + GIGLAA Q+ V  R+VV+DL +   
Sbjct: 23  YPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVVMDLTED-- 80

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 81  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 139

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 140 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 175


>gi|85060224|ref|YP_455926.1| peptide deformylase [Sodalis glossinidius str. 'morsitans']
 gi|123738923|sp|Q2NQQ4|DEF_SODGM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|84780744|dbj|BAE75521.1| polypeptide deformylase [Sodalis glossinidius str. 'morsitans']
          Length = 171

 Score =  137 bits (346), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+V++P+  +N  I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   YPDERLRKVAKPVVDVNDAIRRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  +  EGCLSIPD R  V R+  + V+ +D +     + AD 
Sbjct: 67  RDQRLVMINPELLEKSGETGI-DEGCLSIPDQRGFVPRAEKVKVQALDRDGNSFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA C+QHE+DHL G LF+D+LS LKR  I +KM KL ++
Sbjct: 126 LLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKLARM 165


>gi|94987209|ref|YP_595142.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731458|emb|CAJ54821.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 171

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 101/157 (64%), Gaps = 1/157 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L+++S  ++ I  DI NL   M++ MY  +GIGLAA Q+G L RL+V+D+     
Sbjct: 8   YPDISLQKISLEVQDITQDIHNLAKQMVQTMYDANGIGLAAPQVGYLLRLIVVDVSGPEQ 67

Query: 69  RKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           + + +V INPKI    D  F   +EGCLS+PDYR+ VKR A + +  +D ++      A+
Sbjct: 68  KSSLLVLINPKITPVIDSGFIEGEEGCLSVPDYRSKVKRHAKVLLDAIDLDSNPVSFEAE 127

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           GLL+ CLQHE+DHL+G LFID +S LKR +   ++ K
Sbjct: 128 GLLSVCLQHEIDHLDGKLFIDRVSYLKRKLYDGRLKK 164


>gi|319940733|ref|ZP_08015075.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
 gi|319805884|gb|EFW02651.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
          Length = 179

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P++ +P P L   + P+   N  I  L+++M E MY+  G+GLAA Q+G+L R+VV
Sbjct: 1   MAKLPILQYPHPKLAAKAEPVADFNDAIKTLVNDMAETMYAAPGVGLAANQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     + +VFINP+II    D   ++EGCLS+      VKR   + V   +   +
Sbjct: 61  IDITDD--NSDLLVFINPEIIETKGDLVDHEEGCLSLKGLYEHVKRPGQVRVHAQNIEGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              +   GLLA C+QHE+DHLNGI+FIDHLS+LK+     K+ KL
Sbjct: 119 PFELECTGLLAVCIQHEVDHLNGIVFIDHLSQLKKQRACTKLRKL 163


>gi|213855562|ref|ZP_03383802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 148

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/143 (45%), Positives = 101/143 (70%), Gaps = 3/143 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N     + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGNPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA C+QHE+DHL G LFID+LS
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLS 148


>gi|183598657|ref|ZP_02960150.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827]
 gi|188020843|gb|EDU58883.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827]
          Length = 167

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+  I +    LID++L+ MYSTD GIGLAA QIG    ++
Sbjct: 1   MAVRAIIEIPDERLRVKCDPVTDIAA-AQPLIDDLLDTMYSTDNGIGLAATQIGATLSVM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ ++  R  PMVF+NP+II  S+  + YQEGCLS+P+  ADV R   + V+ +D + 
Sbjct: 60  VIDISEN--RDQPMVFVNPEIIE-SEGETSYQEGCLSVPEIYADVARFKRVKVKALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +  I  +D  LA  +QHE+DHL+G +F+DHLS LKR+M+ KK+ K  +LR
Sbjct: 117 KAFITDSDEFLAIVMQHEIDHLHGKVFLDHLSTLKRNMLLKKLKKQQRLR 166


>gi|299136398|ref|ZP_07029581.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
 gi|298600913|gb|EFI57068.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
          Length = 185

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 102/160 (63%), Gaps = 1/160 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDP+L +    + +   ++  L+D M E MY+  GIGLAA QIG+  ++ VID+  
Sbjct: 21  VVKYPDPVLSKPGEKVTEFTPELAQLVDEMFESMYAAQGIGLAAPQIGISKQITVIDVSF 80

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               ++ +  INP+II   +   V +EGCLS+P+ R  V R+A + VR  +   +   + 
Sbjct: 81  KERPEDKLALINPEIIE-REGKQVEEEGCLSLPEIREKVSRAARVKVRAQNVKGEFFEVE 139

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            + LLA  LQHE+DHL+GILFI+HLSRLKRD++ +++ KL
Sbjct: 140 GEELLARALQHEIDHLHGILFIEHLSRLKRDLVHRRIRKL 179


>gi|294338535|emb|CAZ86864.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
           3As]
          Length = 168

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 100/159 (62%), Gaps = 2/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP L  V++P+  ++  +  L+  M E MY+++G+GLAA Q+ V  R++V+D  +
Sbjct: 6   IIQYPDPRLYTVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIVMDTSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  P+  INP+I+  S +   ++EGCLS+P     V R A + VR +D   Q   + 
Sbjct: 66  E--RNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQPFEMD 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGL A C+QHE+DHL G +F+D+LS LKR+ I  KM K
Sbjct: 124 ADGLTAVCIQHEMDHLLGKVFVDYLSPLKRNRIKTKMLK 162


>gi|15676038|ref|NP_273168.1| peptide deformylase [Neisseria meningitidis MC58]
 gi|121633988|ref|YP_974233.1| peptide deformylase [Neisseria meningitidis FAM18]
 gi|161870945|ref|YP_001600125.1| peptide deformylase [Neisseria meningitidis 053442]
 gi|218767202|ref|YP_002341714.1| peptide deformylase [Neisseria meningitidis Z2491]
 gi|254805844|ref|YP_003084065.1| peptide deformylase [Neisseria meningitidis alpha14]
 gi|54036954|sp|P63916|DEF_NEIMB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040742|sp|P63915|DEF_NEIMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512959|sp|A1KRE5|DEF_NEIMF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083074|sp|A9M464|DEF_NEIM0 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|7225325|gb|AAF40569.1| peptide deformylase [Neisseria meningitidis MC58]
 gi|120865694|emb|CAM09421.1| polypeptide deformylase [Neisseria meningitidis FAM18]
 gi|121051210|emb|CAM07481.1| polypeptide deformylase [Neisseria meningitidis Z2491]
 gi|161596498|gb|ABX74158.1| polypeptide deformylase [Neisseria meningitidis 053442]
 gi|254669386|emb|CBA08535.1| peptide deformylase [Neisseria meningitidis alpha14]
 gi|254671149|emb|CBA08206.1| polypeptide deformylase [Neisseria meningitidis alpha153]
 gi|254672814|emb|CBA06953.1| polypeptide deformylase [Neisseria meningitidis alpha275]
 gi|261391648|emb|CAX49096.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
           meningitidis 8013]
 gi|308388328|gb|ADO30648.1| polypeptide deformylase [Neisseria meningitidis alpha710]
 gi|319411407|emb|CBY91818.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
           meningitidis WUE 2594]
 gi|325129146|gb|EGC51994.1| peptide deformylase [Neisseria meningitidis N1568]
 gi|325131145|gb|EGC53866.1| peptide deformylase [Neisseria meningitidis OX99.30304]
 gi|325133177|gb|EGC55848.1| peptide deformylase [Neisseria meningitidis M6190]
 gi|325135219|gb|EGC57844.1| peptide deformylase [Neisseria meningitidis M13399]
 gi|325137169|gb|EGC59764.1| peptide deformylase [Neisseria meningitidis M0579]
 gi|325138789|gb|EGC61341.1| peptide deformylase [Neisseria meningitidis ES14902]
 gi|325141255|gb|EGC63754.1| peptide deformylase [Neisseria meningitidis CU385]
 gi|325143271|gb|EGC65609.1| peptide deformylase [Neisseria meningitidis 961-5945]
 gi|325145432|gb|EGC67708.1| peptide deformylase [Neisseria meningitidis M01-240013]
 gi|325197399|gb|ADY92855.1| peptide deformylase [Neisseria meningitidis G2136]
 gi|325199324|gb|ADY94779.1| peptide deformylase [Neisseria meningitidis H44/76]
 gi|325203055|gb|ADY98509.1| peptide deformylase [Neisseria meningitidis M01-240149]
 gi|325203229|gb|ADY98682.1| peptide deformylase [Neisseria meningitidis M01-240355]
 gi|325205203|gb|ADZ00656.1| peptide deformylase [Neisseria meningitidis M04-240196]
 gi|325207147|gb|ADZ02599.1| peptide deformylase [Neisseria meningitidis NZ-05/33]
          Length = 167

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E+++  I  LI +M E MY + GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   YPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVVMDLTED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 67  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 161


>gi|288575787|ref|ZP_05977581.2| peptide deformylase [Neisseria mucosa ATCC 25996]
 gi|288566988|gb|EFC88548.1| peptide deformylase [Neisseria mucosa ATCC 25996]
          Length = 193

 Score =  137 bits (345), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+EK++  I  L+ +M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 35  YPDERLHTVAKPVEKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVVMDLTED-- 92

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VF+NP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 93  RSEPRVFVNP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 151

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 152 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 187


>gi|119503586|ref|ZP_01625669.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
 gi|119460648|gb|EAW41740.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
          Length = 168

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 2/162 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR ++ P+  +++ +  L D+MLE MY   GIGLAA Q+ V  R++VID+ ++  
Sbjct: 9   FPDPRLRTIAVPVTHVDARVQRLTDDMLETMYDAPGIGLAATQVDVHERVIVIDISEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P +FINP +         Y EGCLS+P +   ++R   I V   D + +      DG
Sbjct: 67  KDQPQIFINPVVEALDQTLGEYDEGCLSVPGFYETIRRPERIRVTAKDRDGELFSRELDG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           LLA CLQHE+DHL G LF+D+LS LKR  I  K+ K  + RD
Sbjct: 127 LLAICLQHEIDHLEGKLFVDYLSPLKRQRIRGKLEKAQRQRD 168


>gi|87121016|ref|ZP_01076908.1| peptide deformylase [Marinomonas sp. MED121]
 gi|86163854|gb|EAQ65127.1| peptide deformylase [Marinomonas sp. MED121]
          Length = 169

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 99/160 (61%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP LR V++P+   N  +   ID+MLE MY  +G+GLAA Q+    RLVV+D  
Sbjct: 5   PVLEYPDPRLRTVAKPVTDFNDALQVKIDDMLETMYDQNGLGLAATQVDFHQRLVVMDFS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   + +PMVFINP+     D  +  QEGCLS+P +   + R+A + V  +D N      
Sbjct: 65  EE--KNDPMVFINPRFEVLDDAANEEQEGCLSVPGFYEHIYRAARVKVIALDRNGNEFEK 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              GLLA C+QHE+DHL+G L +D+LS LKR+ I  K+ K
Sbjct: 123 KVAGLLAVCVQHEIDHLDGKLMVDYLSPLKRNRIKTKLVK 162


>gi|309378546|emb|CBX22818.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 167

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   YPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVVMDLTED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 67  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 161


>gi|261823200|ref|YP_003261306.1| peptide deformylase [Pectobacterium wasabiae WPP163]
 gi|261607213|gb|ACX89699.1| peptide deformylase [Pectobacterium wasabiae WPP163]
          Length = 170

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR  ++ ++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++VID+ +   
Sbjct: 9   FPDERLRITAQSVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP++I  S +  + +EGCLSIP+ RA V R+  + VR +D   +   + A  
Sbjct: 67  RDQRLVLINPELIEKSGETGI-EEGCLSIPETRALVPRAEHVKVRALDREGKVFELEASE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL +
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAK 164


>gi|295096931|emb|CBK86021.1| peptide deformylase [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 169

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +     + AD 
Sbjct: 67  RDERLVLINPEMLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|288550484|ref|ZP_05970614.2| peptide deformylase [Enterobacter cancerogenus ATCC 35316]
 gi|288314935|gb|EFC53873.1| peptide deformylase [Enterobacter cancerogenus ATCC 35316]
          Length = 164

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 4   IPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSEN-- 61

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D   +   + AD 
Sbjct: 62  RDGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKPFELEADD 120

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL ++R
Sbjct: 121 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 161


>gi|149925345|ref|ZP_01913609.1| peptide deformylase [Limnobacter sp. MED105]
 gi|149825462|gb|EDM84670.1| peptide deformylase [Limnobacter sp. MED105]
          Length = 169

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 103/165 (62%), Gaps = 2/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L+ V+ P+ + +  ++ L  +M E MY   G+GLAA Q+ V  R++VID+ 
Sbjct: 5   PILRYPDPRLKTVATPVTQFDDALVKLTQDMAETMYDAPGVGLAATQVNVHKRIIVIDVT 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   +    VFINP+II  S +  VY+EGCLS+P     V+R   + VR  +   +   I
Sbjct: 65  DD--KSGLTVFINPEIIDASKECKVYEEGCLSVPGIYEKVERPDTVKVRAQNVKGEWFEI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             D LLA C+QHE+DHLNG +F+++LS+LK+  I  KM K  +L+
Sbjct: 123 DCDELLAVCIQHEIDHLNGKVFVEYLSQLKQTRIKTKMKKQDKLQ 167


>gi|296104994|ref|YP_003615140.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059453|gb|ADF64191.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 169

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D       + AD 
Sbjct: 67  RDGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGNPFELEADD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 126 LLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|152977798|ref|YP_001343427.1| peptide deformylase [Actinobacillus succinogenes 130Z]
 gi|150839521|gb|ABR73492.1| peptide deformylase [Actinobacillus succinogenes 130Z]
          Length = 183

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 105/159 (66%), Gaps = 3/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ V+ P+ + N ++   ID+M + MY  +GIGLAA Q+ V  R++ ID+  
Sbjct: 18  VLIYPDERLKTVAAPVTEFNDELQTFIDDMFDTMYQEEGIGLAATQVDVHKRVITIDIS- 76

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +V INP+++  S+  +  +EGCLS+P +R  V R   ITV+ ++   +   ++
Sbjct: 77  -GEKNEQLVLINPELLD-SEGETGIEEGCLSLPGFRGFVPRKEKITVKALNRYGEEFTLH 134

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ K
Sbjct: 135 ADGLLAICIQHEMDHLNGIVFADYLSPLKRNRMKEKLVK 173


>gi|194099884|ref|YP_002003021.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
 gi|291042744|ref|ZP_06568485.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|293398236|ref|ZP_06642441.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
 gi|193935174|gb|ACF30998.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
 gi|291013178|gb|EFE05144.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|291611499|gb|EFF40569.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
 gi|317165346|gb|ADV08887.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 181

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E+++  I  L+ +M E MY + GIGLAA Q+ V  R+VV+DL +   
Sbjct: 23  YPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVVMDLTED-- 80

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 81  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKFTLEADG 139

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 140 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 175


>gi|270157753|ref|ZP_06186410.1| peptide deformylase [Legionella longbeachae D-4968]
 gi|289163978|ref|YP_003454116.1| polypeptide deformylase [Legionella longbeachae NSW150]
 gi|269989778|gb|EEZ96032.1| peptide deformylase [Legionella longbeachae D-4968]
 gi|288857151|emb|CBJ10967.1| putative polypeptide deformylase [Legionella longbeachae NSW150]
          Length = 170

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 101/160 (63%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++  PD  LR V++P+   +  +  LI++M E MY+  G+GLAA QIG+  RL VID+  
Sbjct: 6   ILYLPDARLREVAKPVVHFDDKLQTLIEDMFETMYAAHGVGLAAPQIGIGLRLSVIDIA- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +KN +V INP+II  S+    ++EGCLS+P     V R+  + V+ +D   +   I 
Sbjct: 65  -GDKKNQLVIINPEIIA-SEGEKKFEEGCLSVPGAYDTVIRAEKVIVKALDRTGKPFEIQ 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGLLA CLQHE+DH+NG LFID LS LK+ M  KK+ K 
Sbjct: 123 ADGLLAECLQHEIDHMNGKLFIDLLSPLKKAMARKKLEKF 162


>gi|296134589|ref|YP_003641831.1| peptide deformylase [Thiomonas intermedia K12]
 gi|295794711|gb|ADG29501.1| peptide deformylase [Thiomonas intermedia K12]
          Length = 168

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L  V++P+  ++  +  L+  M E MY+++G+GLAA Q+ V  R++V+D  +   
Sbjct: 9   YPDPRLYIVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIVMDTSEQ-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P+  INP+I+  S +   ++EGCLS+P     V R A + VR +D   Q   + ADG
Sbjct: 67  RNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQPFEMDADG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           L A C+QHE+DHL G +F+D+LS LKR+ I  KM K
Sbjct: 127 LTAVCIQHEMDHLMGKVFVDYLSPLKRNRIKTKMLK 162


>gi|313667406|ref|YP_004047690.1| polypeptide deformylase [Neisseria lactamica ST-640]
 gi|313004868|emb|CBN86294.1| polypeptide deformylase [Neisseria lactamica 020-06]
          Length = 167

 Score =  137 bits (344), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   YPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVVMDLTED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 67  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 161


>gi|53803080|ref|YP_115237.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
 gi|53756841|gb|AAU91132.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
          Length = 178

 Score =  137 bits (344), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 3/162 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR+ + P+E  +  +   +D+M E MY+  G+GLAA Q+ V  R++VID+ +   
Sbjct: 9   FPDERLRKKAAPVEVFDDTLRRTVDDMFETMYAAPGVGLAATQVNVHKRILVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P+  INP+++    +  + +EGCLS+P     V R+  + VR  D N +   + A+G
Sbjct: 67  KDAPLCLINPELLEKQGNGEM-EEGCLSVPGIFEKVPRAESVRVRAQDRNGEFFEMSAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           LLA C+QHE+DHL G LF+DHLS LKR M  KK+ K  +LR+
Sbjct: 126 LLAVCIQHEMDHLEGKLFLDHLSTLKRQMARKKLQKERRLRE 167


>gi|59802191|ref|YP_208903.1| peptide deformylase [Neisseria gonorrhoeae FA 1090]
 gi|239997891|ref|ZP_04717815.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|240015128|ref|ZP_04722041.1| peptide deformylase [Neisseria gonorrhoeae DGI18]
 gi|240017578|ref|ZP_04724118.1| peptide deformylase [Neisseria gonorrhoeae FA6140]
 gi|240081720|ref|ZP_04726263.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|240116732|ref|ZP_04730794.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|240118954|ref|ZP_04733016.1| peptide deformylase [Neisseria gonorrhoeae PID1]
 gi|240124492|ref|ZP_04737448.1| peptide deformylase [Neisseria gonorrhoeae PID332]
 gi|240129167|ref|ZP_04741828.1| peptide deformylase [Neisseria gonorrhoeae SK-93-1035]
 gi|260439507|ref|ZP_05793323.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|268593743|ref|ZP_06127910.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|268597818|ref|ZP_06131985.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|268602403|ref|ZP_06136570.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|268604665|ref|ZP_06138832.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
 gi|268683123|ref|ZP_06149985.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
 gi|268687550|ref|ZP_06154412.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
 gi|75507292|sp|Q5F5P6|DEF_NEIG1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|59719086|gb|AAW90491.1| putative polypeptide deformylase [Neisseria gonorrhoeae FA 1090]
 gi|268547132|gb|EEZ42550.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|268551606|gb|EEZ46625.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|268586534|gb|EEZ51210.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|268588796|gb|EEZ53472.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
 gi|268623407|gb|EEZ55807.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
 gi|268627834|gb|EEZ60234.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
          Length = 167

 Score =  137 bits (344), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E+++  I  L+ +M E MY + GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   YPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVVMDLTED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 67  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 161


>gi|240113996|ref|ZP_04728486.1| peptide deformylase [Neisseria gonorrhoeae MS11]
 gi|240122199|ref|ZP_04735161.1| peptide deformylase [Neisseria gonorrhoeae PID24-1]
 gi|240124639|ref|ZP_04737525.1| peptide deformylase [Neisseria gonorrhoeae SK-92-679]
 gi|254494753|ref|ZP_05107924.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
 gi|268600061|ref|ZP_06134228.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
 gi|268683213|ref|ZP_06150075.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
 gi|226513793|gb|EEH63138.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
 gi|268584192|gb|EEZ48868.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
 gi|268623497|gb|EEZ55897.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
          Length = 161

 Score =  137 bits (344), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E+++  I  L+ +M E MY + GIGLAA Q+ V  R+VV+DL +   
Sbjct: 3   YPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVVMDLTED-- 60

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 61  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKFTLEADG 119

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 120 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 155


>gi|170726943|ref|YP_001760969.1| peptide deformylase [Shewanella woodyi ATCC 51908]
 gi|169812290|gb|ACA86874.1| peptide deformylase [Shewanella woodyi ATCC 51908]
          Length = 163

 Score =  137 bits (344), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 102/160 (63%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R ++P+  I++ +   ID++LE MY TD GIGLAA Q+G  + ++VIDL 
Sbjct: 6   ILTIPDERLKRKAKPVTDISA-VQGFIDDLLETMYHTDDGIGLAATQVGSEHAILVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               R  P V INP+I+    +F V +EGCLSIP YRA V R+  + V  +D       I
Sbjct: 65  --PERDQPQVLINPEIVAAEGEF-VGEEGCLSIPGYRAKVARNEKVKVTALDREGTPFEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D  LA  LQHE+DHLNG++F DHLS+LK+ +  +K+SK
Sbjct: 122 ETDTFLAIVLQHEMDHLNGVVFTDHLSKLKQQIALRKVSK 161


>gi|59713150|ref|YP_205926.1| peptide deformylase [Vibrio fischeri ES114]
 gi|197334102|ref|YP_002157326.1| peptide deformylase [Vibrio fischeri MJ11]
 gi|75506885|sp|Q5E1Q8|DEF_VIBF1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690282|sp|B5FCW6|DEF_VIBFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|59481251|gb|AAW87038.1| peptide deformylase [Vibrio fischeri ES114]
 gi|197315592|gb|ACH65039.1| peptide deformylase [Vibrio fischeri MJ11]
          Length = 170

 Score =  137 bits (344), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 97/150 (64%), Gaps = 3/150 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVVIDVSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP I   S D  + +EGCLS+P  +  V RSA ++V  +D +       
Sbjct: 66  T--RDEPMVLINPVITQKSGDDGI-EEGCLSVPGAKGLVPRSAEVSVSALDRDGNEFSFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           AD LLA C+QHELDHL+G LF+D+LS LKR
Sbjct: 123 ADDLLAICVQHELDHLDGKLFVDYLSPLKR 152


>gi|255067832|ref|ZP_05319687.1| peptide deformylase [Neisseria sicca ATCC 29256]
 gi|255047923|gb|EET43387.1| peptide deformylase [Neisseria sicca ATCC 29256]
          Length = 193

 Score =  136 bits (343), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 35  YPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVVMDLTED-- 92

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 93  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 151

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 152 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 187


>gi|323493448|ref|ZP_08098570.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
 gi|323312271|gb|EGA65413.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
          Length = 167

 Score =  136 bits (343), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 108/159 (67%), Gaps = 5/159 (3%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAH 68
           PDP L+  +  ++ ++S +  LID+ML+ +Y+TD GIGLAA+Q+G    +V+IDL ++  
Sbjct: 10  PDPRLKVTAEKVQDVSS-VQTLIDDMLDTLYATDNGIGLAAIQVGRKEAVVIIDLSEN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P++ +NP++++ SD  ++ QEGCLS+PDY ADV+R   + V  +D       + +D 
Sbjct: 67  RDEPLILVNPEVVSGSDK-AMGQEGCLSVPDYYADVERFTSVVVSALDREGNQITLESDD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            LA  +QHE+DHL+G LFID+LS LKR M  KK+ K ++
Sbjct: 126 FLAIVMQHEIDHLSGNLFIDYLSPLKRQMAMKKVKKYLK 164


>gi|119896391|ref|YP_931604.1| peptide deformylase [Azoarcus sp. BH72]
 gi|119668804|emb|CAL92717.1| probable peptide deformylase [Azoarcus sp. BH72]
          Length = 167

 Score =  136 bits (343), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 102/160 (63%), Gaps = 3/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L R + P++ ++ D+  LID+M E MY   GIGLAA Q+ V  R+VVID+ 
Sbjct: 5   PILRYPDPRLHRRAAPVDTVDDDVRKLIDDMAETMYEAPGIGLAATQVDVHRRVVVIDIS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +   M  INP+I+   D   V +EGCLS+P     V R+  +TVR +D N     +
Sbjct: 65  ED--KSGLMALINPQILE-RDGEQVCEEGCLSVPGVYEKVTRAERVTVRALDRNGHPFEV 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLA C+QHE+DHL+G +F+++LS LK   I  K++K
Sbjct: 122 AAEGLLAVCIQHEIDHLDGKVFVEYLSPLKLGRIKSKLAK 161


>gi|297250811|ref|ZP_06934289.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
 gi|296837967|gb|EFH21905.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
          Length = 181

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 98/156 (62%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E+++  +  L+ +M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 23  YPDERLHTVAKPVEQVDGRVRKLVADMFETMYEARGIGLAATQVDVHERVVVMDLTED-- 80

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 81  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 139

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 140 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 175


>gi|329894842|ref|ZP_08270642.1| Peptide deformylase [gamma proteobacterium IMCC3088]
 gi|328922736|gb|EGG30070.1| Peptide deformylase [gamma proteobacterium IMCC3088]
          Length = 178

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 95/156 (60%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR +++P+ ++      LI +M E MY   GIGLAA Q+ V  R++VID+ +   
Sbjct: 19  FPDPRLRTIAKPVAEVTDQHRALIKDMFETMYQAPGIGLAATQVNVHERILVIDVSE--D 76

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P VFINP++     +   Y EGCLS+P +   V R   I VR ++   +       G
Sbjct: 77  KSEPRVFINPEVEVLDPELGEYDEGCLSVPGFYDTVCRPQRIKVRALNEQGEAYEEELGG 136

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K
Sbjct: 137 LLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEK 172


>gi|212695671|ref|ZP_03303799.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677344|gb|EEB36951.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 162

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 97/139 (69%), Gaps = 4/139 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR+ S+ ++++N  I  L+D+M E MY  DG+GLAA Q+G+L R++V+D++D     
Sbjct: 20  DPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIVVDIRDE---D 76

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  +NP+II   D   V  EGCLS+P++ A+VKR A + V+Y+D N + + I A+GL 
Sbjct: 77  GLIKLVNPEIIE-KDGEQVGVEGCLSVPNFNANVKRPAHVIVKYLDENGEEKKIEAEGLK 135

Query: 131 ATCLQHELDHLNGILFIDH 149
           A  L HE+DHLNG+LFID+
Sbjct: 136 AVALCHEIDHLNGVLFIDN 154


>gi|291285975|ref|YP_003502791.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883135|gb|ADD66835.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 175

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 100/158 (63%), Gaps = 1/158 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD +LR  + P++ I+  I  L+DNM+E M++  G+GLAA Q+G+  RL+VID     +
Sbjct: 8   FPDKVLRIKAEPVDSIDESITELLDNMVETMHARSGVGLAAPQVGISKRLIVIDTSAGEN 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +  INP+II+ ++   V +EGCLSIP     V+R+  +TV+ MD N +   + A+G
Sbjct: 68  EGMLLRVINPEIIS-AEGEQVGEEGCLSIPGEYEPVRRAEKVTVKAMDENGKPYTMEAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            LA   QHE+DHL+G+LFID L   K+D + K + + +
Sbjct: 127 FLARAFQHEIDHLDGVLFIDRLPSYKKDTLKKTIKRRI 164


>gi|90415408|ref|ZP_01223342.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207]
 gi|90332731|gb|EAS47901.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207]
          Length = 168

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 96/157 (61%), Gaps = 2/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR V++P+ +++  I  LI +M + M    GIGLAA QI V  R++V++L +   
Sbjct: 9   FPDPRLRTVAKPVAEVDETIKRLIADMFDTMKDAQGIGLAATQIDVHLRVIVMNLGEDD- 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P VFINP+I    +    Y+EGCLS+P +   V R A + +R +D   +     A G
Sbjct: 68  -IGPRVFINPEIEPLDESVDPYEEGCLSVPGFYEKVDRPAHVVIRALDGEGKAFKEEARG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHL G LF+D+LS  KR  I KK+ K+
Sbjct: 127 LLAVCIQHEIDHLEGKLFVDYLSPFKRQRIRKKLEKI 163


>gi|218778408|ref|YP_002429726.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01]
 gi|254767578|sp|B8FHH0|DEF_DESAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|218759792|gb|ACL02258.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01]
          Length = 172

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 106/164 (64%), Gaps = 2/164 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P PIL +  + IE I+ D++ L+++M E +Y   G+GLAAVQ+GV   ++V D+ +
Sbjct: 6   IVTYPAPILGKPCKLIEDIDEDLVCLVEDMTETLYDAPGLGLAAVQVGVDKAMLVYDVAE 65

Query: 66  HAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             + ++    V INPKI+      +   EGCLS+P++RADV R A +TV  +D   +   
Sbjct: 66  DENSESTGLKVLINPKIVHTEGKVTSENEGCLSVPEFRADVPRFACVTVEGVDHEGKPVK 125

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           I A+GLLA  LQHE+DHL G LFID +S LKR M  ++++K ++
Sbjct: 126 IDAEGLLAIVLQHEIDHLEGKLFIDRISSLKRSMYKRRVAKALK 169


>gi|157964561|ref|YP_001499385.1| polypeptide deformylase [Rickettsia massiliae MTU5]
 gi|157844337|gb|ABV84838.1| Polypeptide deformylase [Rickettsia massiliae MTU5]
          Length = 189

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 16  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 75

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 76  N-NKSSPIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 134

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG +F+D+LS+LKRD + KKM K ++L
Sbjct: 135 AEGFLATVIQHEIDYLNGKIFLDYLSKLKRDTLLKKMLKHIKL 177


>gi|91790468|ref|YP_551420.1| peptide deformylase [Polaromonas sp. JS666]
 gi|91699693|gb|ABE46522.1| peptide deformylase [Polaromonas sp. JS666]
          Length = 173

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 105/164 (64%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  +++P+  +++ +  L  +M + MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MTQLTILRYPDPRLHTIAKPVGAVDARLRQLASDMFDTMYEAAGIGLAATQVDVHERLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I+  S +  V  EGCLS+P     V+RS  + V+ +D + +
Sbjct: 61  IDVSED--RDQPLVLINPEILWASPETRVGDEGCLSVPGIYDGVERSVAVKVQALDLDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q+  A+G+LA C+QHE+DHL G +F+++LS LKR+ I  KM K
Sbjct: 119 LQVHAAEGMLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIK 162


>gi|114777061|ref|ZP_01452081.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1]
 gi|114552582|gb|EAU55042.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1]
          Length = 180

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 109/180 (60%), Gaps = 14/180 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++I PD  L +VSRP+E  ++ ++  LI +M + MY   G+GLAA Q+G L R+ 
Sbjct: 1   MAVREILIHPDDRLVQVSRPVEFPLSDEVKELIRDMADTMYDAPGVGLAAPQVGELLRIA 60

Query: 60  VID--LQDHAHRKNP---------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           V D   +D   R +           V+INP+ +  SD+   ++EGCLS+P+   DV R A
Sbjct: 61  VTDTVWRDKEVRHDGDLPGGHRELKVWINPEFLWKSDEMETWEEGCLSVPETWGDVSRPA 120

Query: 109 FITVRYMDCNA-QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + +R+ D +  QH+  + DG  A  LQHE DHL+G LFID+LS LKR MITKKM KL +
Sbjct: 121 ALRLRWFDEHGVQHEQDF-DGFQAVALQHEFDHLDGKLFIDYLSPLKRRMITKKMKKLYK 179


>gi|212635128|ref|YP_002311653.1| peptide deformylase [Shewanella piezotolerans WP3]
 gi|212556612|gb|ACJ29066.1| Formylmethionine deformylase [Shewanella piezotolerans WP3]
          Length = 163

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 101/160 (63%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R + P++ I++ +   ID+++E MY TD GIGLAA Q+G L+ ++VIDL 
Sbjct: 6   ILTIPDVRLKRKAEPVKDIDA-VQGFIDDLIETMYDTDDGIGLAATQVGSLHAILVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  PMV INP+I+    +F   +EGCLSIP YRA V R   + V  +D   Q   I
Sbjct: 65  EE--RDQPMVLINPEIVETRGEFQ-GEEGCLSIPGYRAKVNRHEGVKVTALDRTGQAFEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D  LA  LQHE+DHL GI+F DHLS LK+ +  KK+ K
Sbjct: 122 DTDEFLAIVLQHEMDHLKGIVFTDHLSMLKQQIALKKVKK 161


>gi|187476716|ref|YP_784740.1| peptide deformylase [Bordetella avium 197N]
 gi|115421302|emb|CAJ47807.1| peptide deformylase [Bordetella avium 197N]
          Length = 170

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 105/160 (65%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++VID+ 
Sbjct: 5   PILRYPDPRLHKVAKPVAVVDDRIRQLVKDMAETMYDAPGVGLAATQVDVHERVIVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +  +    +  INP+I   S++  VY+EGCLS+P    +VKR+A I  + +D + +    
Sbjct: 65  EDGNELRAL--INPEITWMSEELQVYEEGCLSVPGIYDEVKRAARIRCKALDTDGKVFEF 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLA C+QHE+DHL+G +F+++LS LK++ I  ++ K
Sbjct: 123 EAEGLLAVCVQHEIDHLDGKVFVEYLSVLKQNRIKTRLKK 162


>gi|238650243|ref|YP_002916094.1| polypeptide deformylase [Rickettsia peacockii str. Rustic]
 gi|238624341|gb|ACR47047.1| polypeptide deformylase [Rickettsia peacockii str. Rustic]
          Length = 183

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYTPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIARAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  N-NKSSPIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELS 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG  F+D+LS+LKRD++ KKM K ++L
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDILLKKMLKHIKL 171


>gi|325849091|ref|ZP_08170583.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480336|gb|EGC83399.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 153

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 97/139 (69%), Gaps = 4/139 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR+ S+ ++++N  I  L+D+M E MY  DG+GLAA Q+G+L R++V+D++D     
Sbjct: 11  DPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIVVDIRDE---D 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  +NP+II   D   V  EGCLS+P++ A+VKR A + V+Y+D N + + I A+GL 
Sbjct: 68  GLIKLVNPEIIE-KDGEQVGVEGCLSVPNFNANVKRPAHVIVKYLDENGEEKKIEAEGLK 126

Query: 131 ATCLQHELDHLNGILFIDH 149
           A  L HE+DHLNG+LFID+
Sbjct: 127 AVALCHEIDHLNGVLFIDN 145


>gi|3023625|sp|P94601|DEF_FREDI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1772503|emb|CAA71353.1| polypeptide deformylase [Tolypothrix sp. PCC 7601]
          Length = 187

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 93/140 (66%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I K++ ++  LI +ML+ MYS DGIGLAA Q+G+  +L+VIDL+      
Sbjct: 24  DRVLRQPAKRIAKVDDELRQLIRDMLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPDNPAN 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP I   S +  V QEGCLSIP+   DVKR   + + Y D N + + + A  LL
Sbjct: 84  PPLVLINPTIKQVSKEICVAQEGCLSIPNVYMDVKRPEVVEIAYKDENGRPKTLKATDLL 143

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A C+QHE+DHLNG++F+D +
Sbjct: 144 ARCIQHEMDHLNGVVFVDRV 163


>gi|116747597|ref|YP_844284.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB]
 gi|158512342|sp|A0LEJ7|DEF_SYNFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116696661|gb|ABK15849.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB]
          Length = 170

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 95/149 (63%), Gaps = 1/149 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDPILR+ +  +E I+  ++ LID+M E MY   GIGLAA Q+G    L+V+DLQ    
Sbjct: 9   YPDPILRQKAASVENIDEALIKLIDDMTETMYEAPGIGLAANQVGRSLSLIVVDLQRQDE 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +V INP+I+    + + ++EGCLS+P+Y + VKR A + VR    + +   I A G
Sbjct: 69  EHGLIVLINPQIVATQGEIT-WEEGCLSVPEYFSAVKRHAEVVVRGYGRDGKEMEIQAGG 127

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDM 157
           LLA  LQHE+DHL G LFID L+ + RD+
Sbjct: 128 LLAVALQHEIDHLEGRLFIDRLNPITRDI 156


>gi|300871518|ref|YP_003786391.1| peptide deformylase [Brachyspira pilosicoli 95/1000]
 gi|300689219|gb|ADK31890.1| peptide deformylase [Brachyspira pilosicoli 95/1000]
          Length = 177

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 101/165 (61%), Gaps = 9/165 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M++K LVI+ D  L+  S  +E ++ +I+ LID+M E MY  +G+GLAAVQ+GVL R++V
Sbjct: 1   MIRK-LVIYGDDRLKEKSSYVENVDEEILTLIDDMFETMYKANGVGLAAVQVGVLKRVIV 59

Query: 61  IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I + D      P   +  INP+II   +D  + +EGCLS P    +V R   I V+Y+D 
Sbjct: 60  ISVPDFDDETKPDFKLALINPEIIWHGEDTEILEEGCLSFPKISDEVARYKEIKVKYIDT 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-----RLKRDM 157
             + QI+ A   +A  LQHE+DH NGI FID L      RLK+D+
Sbjct: 120 ENKEQILDAKDYIAKVLQHEIDHTNGITFIDRLESYQKRRLKKDL 164


>gi|34580422|ref|ZP_00141902.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|229586763|ref|YP_002845264.1| Polypeptide deformylase [Rickettsia africae ESF-5]
 gi|28261807|gb|EAA25311.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|228021813|gb|ACP53521.1| Polypeptide deformylase [Rickettsia africae ESF-5]
          Length = 183

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  N-NKSSPIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG  F+D+LS+LKRD + KKM K ++L
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKKMLKHIKL 171


>gi|157834784|pdb|2DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr,
           20 Structures
          Length = 147

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 102/143 (71%), Gaps = 3/143 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 8   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 66  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA C+QHE+DHL G LF+D+LS
Sbjct: 125 LLAICIQHEMDHLVGKLFMDYLS 147


>gi|256830603|ref|YP_003159331.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028]
 gi|256579779|gb|ACU90915.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028]
          Length = 170

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 105/167 (62%), Gaps = 1/167 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +V +P+P+L + + P+ +I  +I  L   MLE+MY+  GIGLAA Q+    RL+ +DL
Sbjct: 3   RTIVTYPNPVLAKKAAPVVEITEEIRALAAEMLEIMYADKGIGLAAPQVAESIRLITVDL 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                R++P VF+NP +     +    +EGCLS+  YR  VKR+  + +   D + +   
Sbjct: 63  SGPDKREDPHVFVNPVLSNLEGEVE-SEEGCLSVVGYRTTVKRAERLHLSATDLDGKPVE 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           + AD L+A CLQHE+DHL+G+LFID +S+LKR +  +K+ K ++ ++
Sbjct: 122 MDADDLMAICLQHEVDHLDGVLFIDKISKLKRTLYERKLKKWLKEKN 168


>gi|157830807|pdb|1DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr,
           9 Structures
 gi|256599481|pdb|2KMN|A Chain A, Solution Structure Of Peptide Deformylase Complexed With
           Actinonin
          Length = 147

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 102/143 (71%), Gaps = 3/143 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++  
Sbjct: 8   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN-- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 66  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA C+QHE+DHL G LF+D+LS
Sbjct: 125 LLAICIQHEMDHLVGKLFMDYLS 147


>gi|258622314|ref|ZP_05717340.1| peptide deformylase [Vibrio mimicus VM573]
 gi|258624834|ref|ZP_05719762.1| peptide deformylase [Vibrio mimicus VM603]
 gi|262164774|ref|ZP_06032512.1| peptide deformylase [Vibrio mimicus VM223]
 gi|262173015|ref|ZP_06040692.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|258582832|gb|EEW07653.1| peptide deformylase [Vibrio mimicus VM603]
 gi|258585638|gb|EEW10361.1| peptide deformylase [Vibrio mimicus VM573]
 gi|261890373|gb|EEY36360.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|262027154|gb|EEY45821.1| peptide deformylase [Vibrio mimicus VM223]
          Length = 168

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 109/165 (66%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP LR  S+ +  + S +  LID++L+ +Y+TD GIGLAA Q+G    +VVIDL 
Sbjct: 6   ILTAPDPRLRVQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D+  R  PMV INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D + +   I
Sbjct: 65  DN--RDEPMVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDRDGKPLKI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 122 ESSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|152981416|ref|YP_001353370.1| formylmethionine deformylase [Janthinobacterium sp. Marseille]
 gi|151281493|gb|ABR89903.1| formylmethionine deformylase [Janthinobacterium sp. Marseille]
          Length = 173

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 105/164 (64%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  V+ P+++I  DI  L+ +M + MY+ DGIGLAA Q+ V  +++V
Sbjct: 1   MTRLSVLQYPDPRLYTVAEPVQQITQDIRRLVADMTQTMYALDGIGLAATQVDVHLQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R    V INP I+      + Y+EGCLS+PD    V+R+A+I VR +D + +
Sbjct: 61  IDVSEKQNRLQ--VLINPTIVKMGGK-AEYEEGCLSVPDVFESVRRAAWIHVRALDLDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A+GL A C+QHE+DHL G++F++HLS   +  I   +SK
Sbjct: 118 TIDVQAEGLKAMCIQHEMDHLQGMVFVEHLSPTNQRRILNSLSK 161


>gi|189499854|ref|YP_001959324.1| peptide deformylase [Chlorobium phaeobacteroides BS1]
 gi|238692288|sp|B3EPG5|DEF_CHLPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189495295|gb|ACE03843.1| peptide deformylase [Chlorobium phaeobacteroides BS1]
          Length = 185

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 103/163 (63%), Gaps = 3/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  + D +LRR ++P+++ ++ +  LI NMLE M + +GIGLAA Q+GV  RL+V+DL 
Sbjct: 4   PINTYSDEVLRRKAKPLKESDAQLEELISNMLESMRNAEGIGLAAPQVGVSLRLIVVDLS 63

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             +     +PMV INP I++    F+  +EGCLSIPD R DV R + I ++Y D N +  
Sbjct: 64  LAEGYEAASPMVVINPHILSVKS-FNSMEEGCLSIPDVRGDVVRPSAIQLKYRDRNFEEC 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           I   D L A  +QHE+DHL+G LF+D + R  R  I K++  L
Sbjct: 123 IGEFDRLAARVIQHEIDHLDGTLFVDRMQRRDRRKIQKELDAL 165


>gi|254251081|ref|ZP_04944399.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
 gi|124893690|gb|EAY67570.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
          Length = 167

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+I+  SD   VY+EGCLS+P    +V+R   + VR ++ N +   +  +
Sbjct: 67  -KNELRAFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDRVRVRALNENGETFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 126 GLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKL 163


>gi|209693699|ref|YP_002261627.1| peptide deformylase [Aliivibrio salmonicida LFI1238]
 gi|238058218|sp|B6EP21|DEF_ALISL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|208007650|emb|CAQ77760.1| peptide deformylase (polypeptide deformylase) [Aliivibrio
           salmonicida LFI1238]
          Length = 169

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 96/150 (64%), Gaps = 3/150 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FPD  LR V++P++ +  +I   ID+M+E MY  +GIGLAA Q+    R+VVID+ +
Sbjct: 6   VLTFPDDRLRTVAKPVKTVTPEIQTFIDDMIETMYDEEGIGLAATQVDFHQRIVVIDVSE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R  PMV INP I   S D  + +EGCLS+P  +  V RSA ++V  +D +       
Sbjct: 66  T--RDEPMVLINPVITQKSGDDGI-EEGCLSVPGAKGMVPRSAEVSVTALDRDGNEFSFD 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           AD LLA C+QHELDHL G LF+D+LS LKR
Sbjct: 123 ADDLLAICVQHELDHLEGKLFVDYLSPLKR 152


>gi|256544906|ref|ZP_05472277.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170]
 gi|256399405|gb|EEU13011.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170]
          Length = 154

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 96/139 (69%), Gaps = 4/139 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR+ S+ ++++N  I  L+D+M E MY  DG+GLAA Q+G+L R++V+D++D     
Sbjct: 11  DPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIVVDVRDE---D 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  +NP+II   D   V  EGCLS+P++ A+VKR A + V+Y+D N   + I A+GL 
Sbjct: 68  GLIKLVNPEIIE-KDGEQVGVEGCLSVPNFNANVKRPAHVVVKYLDENGDEKKIEAEGLK 126

Query: 131 ATCLQHELDHLNGILFIDH 149
           A  L HE+DHLNGILFID+
Sbjct: 127 AVALCHEIDHLNGILFIDN 145


>gi|226310454|ref|YP_002770348.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
 gi|226093402|dbj|BAH41844.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
          Length = 171

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  K ++ F DPILR+V++P+E++N     L+D M E +Y+ DG  GLAA QIG+L R+V
Sbjct: 1   MAVKQILPFGDPILRKVAKPVEELNEKTFKLLDEMAETLYAADGRAGLAAPQIGILRRVV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  D       +  INP+II  S +  +  E CLS P Y  +VKR+  + V+ ++   
Sbjct: 61  VMDCGD-----GLIELINPEIIERSGE-QIGMEACLSFPGYYGNVKRAEHVKVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+  DG LA C+QHE+DHL+GILF+DH+  
Sbjct: 115 EEMILAGDGFLAVCMQHEIDHLDGILFVDHVQE 147


>gi|261252741|ref|ZP_05945314.1| peptide deformylase [Vibrio orientalis CIP 102891]
 gi|260936132|gb|EEX92121.1| peptide deformylase [Vibrio orientalis CIP 102891]
          Length = 167

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 5/159 (3%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAH 68
           PDP L+  +  ++ + S +  LID+MLE +Y+TD GIGLA+ Q+G    +V+IDL +   
Sbjct: 10  PDPRLKVKAEKVQDL-STVQTLIDDMLETLYATDNGIGLASTQVGRKEAVVIIDLSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P++ +NP++++ SD  ++ QEGCLS+PDY ADV+R   + V  +D   +   I +D 
Sbjct: 67  RDEPLILVNPEVVSGSDK-ALGQEGCLSVPDYYADVERFTSVVVSALDREGKPITIESDE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            LA  +QHE+DHL+G LFID+LS LKR M  KK+ K V+
Sbjct: 126 FLAIVMQHEIDHLSGNLFIDYLSPLKRKMAMKKVKKYVK 164


>gi|171319440|ref|ZP_02908545.1| peptide deformylase [Burkholderia ambifaria MEX-5]
 gi|171095332|gb|EDT40313.1| peptide deformylase [Burkholderia ambifaria MEX-5]
          Length = 167

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDISEE-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+II  SD+  VY+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 67  -KNELRAFINPEIIWSSDEKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGEAFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163


>gi|254796760|ref|YP_003081596.1| peptide deformylase [Neorickettsia risticii str. Illinois]
 gi|254590005|gb|ACT69367.1| peptide deformylase [Neorickettsia risticii str. Illinois]
          Length = 205

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 104/165 (63%), Gaps = 13/165 (7%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           LVI PDPIL +VS  +  ++ +    +D+MLE MY   GIGLAAVQ+GVL R++V+D+  
Sbjct: 26  LVIEPDPILHKVSGNVVGVSDEKREFLDDMLETMYHYTGIGLAAVQVGVLERIIVVDVPP 85

Query: 64  --QDHAHRKN---------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             + H+   N         P   +NP+II FS +     EGCLS+P+   ++ R   + V
Sbjct: 86  DKEWHSSPLNHVGYESSGGPYYLVNPEIIEFSRNLVSADEGCLSLPEQNYEIVRPDAVVV 145

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
           +Y++ N +  ++ A+G LA C+QHE+DHL+G L++ HLS+LK D+
Sbjct: 146 KYLNYNGEECLLKANGWLARCIQHEVDHLDGKLYVSHLSKLKYDL 190


>gi|186474806|ref|YP_001856276.1| peptide deformylase [Burkholderia phymatum STM815]
 gi|184191265|gb|ACC69230.1| peptide deformylase [Burkholderia phymatum STM815]
          Length = 167

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 103/159 (64%), Gaps = 2/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+EK++  I  L+ +M E MY+  G+GLAA Q+ V  R++VID+ D   
Sbjct: 9   YPDKRLHKVAKPVEKVDDRIRKLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSDT-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            +    FINP+I+  SD+  +++EGCLS+P    +V+R+  + VR M+   +   +  +G
Sbjct: 67  HEELRAFINPEILWSSDERKIHEEGCLSVPGIYDNVERAEKVRVRAMNEKGETFELDCEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G +F+++LS LK+  I  KM KL  
Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQTRIKSKMKKLAH 165


>gi|220907940|ref|YP_002483251.1| peptide deformylase [Cyanothece sp. PCC 7425]
 gi|219864551|gb|ACL44890.1| peptide deformylase [Cyanothece sp. PCC 7425]
          Length = 188

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 2/153 (1%)

Query: 3   KKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + PL I    D +LR+  + I ++N++   L   ML+ MYS DGIGLAA Q+GV  +L+V
Sbjct: 14  EPPLTIHYLGDRVLRQPCKRISQVNNETRELARTMLQTMYSADGIGLAAPQVGVNKQLIV 73

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+        P++ +NP I  FS + S+ QEGCLSIP    DVKR   I V Y D   +
Sbjct: 74  VDIHPDEAANPPLILVNPVIREFSPEVSLGQEGCLSIPGVYLDVKRPEMIEVAYKDEQGR 133

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            Q++YA GLL+  +QHE+DHL G++F+D +  +
Sbjct: 134 PQVLYASGLLSRAIQHEIDHLGGVMFVDRVENM 166


>gi|226942060|ref|YP_002797134.1| Def [Laribacter hongkongensis HLHK9]
 gi|226716987|gb|ACO76125.1| Def [Laribacter hongkongensis HLHK9]
          Length = 167

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V+RP++ ++  +  LID+M E MY+  GIGLAA QI    RLVVIDL +   
Sbjct: 9   YPDERLHTVARPVDVVDDALRRLIDDMAETMYAAHGIGLAATQIDYHRRLVVIDLSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +V INP +IT     +VY+EGCLS+P     V R+  +TV  +D N Q   + A+G
Sbjct: 67  HDGLLVLINP-VITRKAGETVYEEGCLSVPGIYDKVTRAETVTVEALDRNGQPFSLDAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL+G +F++HLS++K+  I +K+ K
Sbjct: 126 LLAICIQHEIDHLDGKVFVEHLSQMKQSRIKQKLKK 161


>gi|34499720|ref|NP_903935.1| peptide deformylase [Chromobacterium violaceum ATCC 12472]
 gi|39930829|sp|Q7NQ75|DEF_CHRVO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34105571|gb|AAQ61925.1| Polypeptide deformylase [Chromobacterium violaceum ATCC 12472]
          Length = 167

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E  ++ +   ID+M E MY   GIGLAA Q+    RLVV+D+ +   
Sbjct: 9   YPDERLHTVAKPVEVFDAALQQQIDDMFETMYEAKGIGLAATQVDYHRRLVVMDISEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+   D  +VY+EGCLS+P     V R+  + V+  D + +   + ADG
Sbjct: 67  RDERRVFINPEIVE-KDGETVYEEGCLSVPGIYDKVTRAERVKVKAQDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHLNG++F++ LS++K+  I  K+ K
Sbjct: 126 LLAICIQHELDHLNGVVFVERLSQMKQQRIKTKLKK 161


>gi|78484538|ref|YP_390463.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
 gi|123755296|sp|Q31J84|DEF_THICR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78362824|gb|ABB40789.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
          Length = 169

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +V++PD  LR V +P+ ++  ++  LID M   MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MDKLDIVLYPDEGLREVCKPVPEMTDELDKLIDEMFYTMYDAPGIGLAAPQVAVQQRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +  P+  +NP+II  +   + ++EGCLSIP   A V R + I VR MD + +
Sbjct: 61  VDISET--KDEPIALLNPEIIKTAGKIT-WEEGCLSIPGIYAKVDRPSDILVRGMDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+ LLA C+QHE+DHLNG LFIDHLS LKR    +K  K
Sbjct: 118 TIEFEANELLAVCIQHEIDHLNGKLFIDHLSGLKRTRAIQKFKK 161


>gi|67459122|ref|YP_246746.1| polypeptide deformylase [Rickettsia felis URRWXCal2]
 gi|67004655|gb|AAY61581.1| Polypeptide deformylase [Rickettsia felis URRWXCal2]
          Length = 183

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ +     +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQTLNIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P+VFINP+I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  N-NKSSPIVFINPEITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELE 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG  F+D++S+LKRD + KKM K ++L
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYVSKLKRDTLLKKMLKHIKL 171


>gi|163756828|ref|ZP_02163937.1| peptide deformylase [Kordia algicida OT-1]
 gi|161323217|gb|EDP94557.1| peptide deformylase [Kordia algicida OT-1]
          Length = 196

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 103/177 (58%), Gaps = 12/177 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V F DP+LR+V++ I     ++  L++NM E MY+  G+GLAA Q+G+  RL +ID  
Sbjct: 4   PIVAFGDPVLRKVAKDITPDYPNLDTLLENMFETMYNAYGVGLAAPQVGLPIRLFMIDAT 63

Query: 65  --------DHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                   D   RK       VFIN KII  + +  V+ EGCLSIPD R DV R   I +
Sbjct: 64  GFAEDEELDEEQRKQLEGMKKVFINAKIIERNGEPWVFNEGCLSIPDIREDVFRPESIKI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            YMD N +  +   DGL A  +QHE DH+ GILF D LS LKR ++  +++ + + R
Sbjct: 124 EYMDENFEKHVEEYDGLAARVIQHEYDHIEGILFTDKLSALKRRLLKGRLTNISRGR 180


>gi|124007536|ref|ZP_01692241.1| peptide deformylase [Microscilla marina ATCC 23134]
 gi|123987019|gb|EAY26775.1| peptide deformylase [Microscilla marina ATCC 23134]
          Length = 183

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 99/165 (60%), Gaps = 3/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DP+L++ +  I    +D+  L++NM E MY   G+GLAA QIG   RL VID +
Sbjct: 4   PIVAYGDPVLKKKAEEIAP-GTDVSELVENMFETMYEAHGVGLAAPQIGKSLRLFVIDPE 62

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D A +   M FINP I+       V++EGCLSIPD R +V R   I ++Y D N +  
Sbjct: 63  PMDEALQNMKMTFINPVILEEEGTEWVFEEGCLSIPDIRENVSRQPKIRIKYFDLNWKEH 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               DG+ A  +QHE DH+ G+LF D+LS  K+ ++  +++K+ +
Sbjct: 123 EAEYDGMAARVIQHEYDHIEGVLFTDYLSGFKKRLLKSRLTKISK 167


>gi|167834978|ref|ZP_02461861.1| peptide deformylase [Burkholderia thailandensis MSMB43]
          Length = 167

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+++  SD   VY+EGCLS+P    +V+R   + VR +D   +   I  +
Sbjct: 67  -KNELRVFINPELVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGETFEIDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL
Sbjct: 126 GLLAVCIQHEMDHLIGRVFVQYLSPLKQTRIKTKMKKL 163


>gi|170697716|ref|ZP_02888803.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
 gi|170137331|gb|EDT05572.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
          Length = 167

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 104/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDISEE-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 67  -KNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGESFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163


>gi|37676994|ref|NP_937390.1| peptide deformylase [Vibrio vulnificus YJ016]
 gi|39930924|sp|Q7MCQ2|DEF1_VIBVY RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|37201538|dbj|BAC97360.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016]
          Length = 168

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 107/165 (64%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP LR  S+ +  + + +  LID++LE +Y TD G+GLAA Q+G    +VVIDL 
Sbjct: 6   ILTAPDPRLRVQSKEVTDVAA-VQTLIDDLLETLYETDNGVGLAAPQVGREEAIVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           ++  R  P+V +NPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D N +   I
Sbjct: 65  EN--RDEPLVLVNPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDRNGKELRI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K  +LR
Sbjct: 122 ETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166


>gi|157803421|ref|YP_001491970.1| peptide deformylase [Rickettsia canadensis str. McKiel]
 gi|166198522|sp|A8EXV2|DEF_RICCK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157784684|gb|ABV73185.1| peptide deformylase [Rickettsia canadensis str. McKiel]
          Length = 175

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  PD  L++ S  + ++       +D+ML+ MY  D  GLAAVQ+G+L R++VID++
Sbjct: 5   PIVTAPDERLKQKSHRVLEVTDQTRKFMDDMLKTMYHEDAAGLAAVQVGILKRILVIDIK 64

Query: 65  DHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DH   + P  F     +NP II  S++     EGC+S+P  R +V R   I ++Y+D + 
Sbjct: 65  DHDPVERPKDFYPLFIVNPDIIDKSEELVTANEGCISVPRQRVEVARPESIKIKYLDYHN 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 125 KQQELEANDWLARVIQHEYDHLEGKLMIDYLSSLKRDVVLRKLKKL 170


>gi|332974243|gb|EGK11176.1| peptide deformylase [Kingella kingae ATCC 23330]
          Length = 167

 Score =  134 bits (338), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 102/160 (63%), Gaps = 3/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  P+  L  V++P+ +++  I  L+ +M E MY+  GIGLAA Q+ V  R+VVIDL 
Sbjct: 5   PILTHPNERLHIVAQPVVQVDDRIRTLVQDMAETMYAARGIGLAATQVDVHERVVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +  ++   +  INP +IT  D  + Y+EGCLS+P     V R+  ITV ++D     Q +
Sbjct: 65  EEHNQL--LALINP-VITKKDGETTYEEGCLSVPGIYDTVTRAKTITVEFLDTQGNKQSL 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHELDHL G LF+++LS LK++ I  K+ K
Sbjct: 122 DADGLLAICIQHELDHLAGKLFVEYLSPLKQNRIKTKLKK 161


>gi|262403341|ref|ZP_06079901.1| peptide deformylase [Vibrio sp. RC586]
 gi|262350840|gb|EEY99973.1| peptide deformylase [Vibrio sp. RC586]
          Length = 168

 Score =  134 bits (338), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 108/165 (65%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP LR  S+ +  + S +  LID++L+ +Y+TD GIGLAA Q+G    +VVIDL 
Sbjct: 6   ILTAPDPRLRVQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D+  R  PMV INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D + +   I
Sbjct: 65  DN--RDEPMVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDRDGKPLRI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|330818688|ref|YP_004362393.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
 gi|327371081|gb|AEA62437.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
          Length = 167

 Score =  134 bits (338), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++ ++  I  L+D+M E MY+  GIGLAA Q+ V  R++VID  +   
Sbjct: 9   YPDKRLHKVAKPVDVVDDRIRKLVDDMAETMYAAPGIGLAATQVDVHERVIVIDTSED-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +  + Q   +  +
Sbjct: 67  -KNALQVFINPEIVWSSDGKQVYEEGCLSVPGVYDEVERPDHVRVRALGRDGQPFELECE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK++ I  KM KL
Sbjct: 126 GLLAVCIQHEMDHLMGRVFVQYLSPLKQNRIKSKMKKL 163


>gi|134094837|ref|YP_001099912.1| peptide deformylase [Herminiimonas arsenicoxydans]
 gi|133738740|emb|CAL61787.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas
           arsenicoxydans]
          Length = 177

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 106/164 (64%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PD  L +V++ + ++++ I  L+++M + MY+ DGIGLAA Q+ V  R+++
Sbjct: 1   MSKLAILQYPDERLHKVAQAVTQVDAGIRRLVEDMAQTMYAADGIGLAATQVNVHLRVIL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   R   +V INP++I         +EGCLS+PD    VKR+A+I +R +D N +
Sbjct: 61  VDISED--RSQLLVMINPEVIKMGGSAEC-EEGCLSVPDVYEKVKRAAWIRLRALDINGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + ADGL A C+QHELDHL G++F++HLS L +  I   ++K
Sbjct: 118 PFEVQADGLKAMCIQHELDHLQGMVFVEHLSPLNQARILSTLAK 161


>gi|115353233|ref|YP_775072.1| peptide deformylase [Burkholderia ambifaria AMMD]
 gi|115283221|gb|ABI88738.1| peptide deformylase [Burkholderia ambifaria AMMD]
          Length = 167

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 104/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDISEE-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 67  -KNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163


>gi|323524423|ref|YP_004226576.1| peptide deformylase [Burkholderia sp. CCGE1001]
 gi|323381425|gb|ADX53516.1| peptide deformylase [Burkholderia sp. CCGE1001]
          Length = 167

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++VID+ D AH
Sbjct: 9   YPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSD-AH 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            +  + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +   +  +G
Sbjct: 68  DQ-LLAFINPEIIWSSDEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFELDCEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G +F+++LS LK+  I  KM KL  
Sbjct: 127 LLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLAH 165


>gi|325267954|ref|ZP_08134603.1| peptide deformylase [Kingella denitrificans ATCC 33394]
 gi|324980640|gb|EGC16303.1| peptide deformylase [Kingella denitrificans ATCC 33394]
          Length = 167

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 3/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  P+  L  V++P+ +++  I  L+ +M E MY+  GIGLAA Q+ V  R+VVIDL 
Sbjct: 5   PILTHPNERLHIVAKPVAQVDDRIRTLVADMAETMYAAKGIGLAATQVDVHERVVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +  ++   +  INP  IT  D  + ++EGCLS+P     V R+  +TV Y+D   + Q +
Sbjct: 65  EEHNQL--LALINP-TITKKDGETTFEEGCLSVPGIYDTVSRAETVTVEYLDTEGKPQSL 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHELDHL G LF+++LS LK+  I  K+ K
Sbjct: 122 DADGLLAICIQHELDHLAGKLFVEYLSPLKQSRIKSKLKK 161


>gi|148285009|ref|YP_001249099.1| peptide deformylase [Orientia tsutsugamushi str. Boryong]
 gi|158514262|sp|A5CF65|DEF_ORITB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146740448|emb|CAM80944.1| polypeptide deformylase [Orientia tsutsugamushi str. Boryong]
          Length = 181

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 9/169 (5%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           LV  PDPIL++VS P++ +N  I  LID+MLE MY   G+GLAA Q+ V  R++V+DL  
Sbjct: 6   LVTAPDPILKKVSSPVDTVNDSIRQLIDDMLETMYHNHGVGLAAPQVAVSKRIIVLDLSK 65

Query: 66  ---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                    ++  K P+  +NP +   S+     +EGCLS+P    +V R   I V Y+D
Sbjct: 66  VDIEEDNITNSEYKYPLFMVNPIVKAISNQTVTAKEGCLSLPKQAIEVSRYHEIQVTYLD 125

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              + + + A G LA  +QHE+DHL+GIL +D+LS LK++     +SK+
Sbjct: 126 YYNKLKTLNAAGWLARAIQHEVDHLDGILLVDYLSNLKKEATLNTLSKI 174


>gi|33591756|ref|NP_879400.1| peptide deformylase [Bordetella pertussis Tohama I]
 gi|33594959|ref|NP_882602.1| peptide deformylase [Bordetella parapertussis 12822]
 gi|33599236|ref|NP_886796.1| peptide deformylase [Bordetella bronchiseptica RB50]
 gi|39931022|sp|Q7VS88|DEF2_BORPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|39931030|sp|Q7W1V3|DEF1_BORPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|39931046|sp|Q7WQS9|DEF1_BORBR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|33565035|emb|CAE39984.1| polypeptide deformylase [Bordetella parapertussis]
 gi|33571399|emb|CAE44880.1| polypeptide deformylase [Bordetella pertussis Tohama I]
 gi|33575282|emb|CAE30745.1| polypeptide deformylase [Bordetella bronchiseptica RB50]
 gi|332381173|gb|AEE66020.1| peptide deformylase [Bordetella pertussis CS]
          Length = 170

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 100/156 (64%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L + ++P+  ++  I  L+ +M + MY   G+GLAA Q+ V  R+VVID+ +  +
Sbjct: 9   YPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVVIDVSEEGN 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
             +  V INP+I   SD+   Y+EGCLS+P    +V+R+A I  + +D   Q     ADG
Sbjct: 69  --DLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQPYEFEADG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL+G +F+++LS LK++ I  K+ K
Sbjct: 127 LLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKK 162


>gi|194291227|ref|YP_002007134.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
 gi|193225062|emb|CAQ71073.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
          Length = 168

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSET--RDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK + I  K+ K  + R
Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERAR 167


>gi|167579358|ref|ZP_02372232.1| peptide deformylase [Burkholderia thailandensis TXDOH]
 gi|167617459|ref|ZP_02386090.1| peptide deformylase [Burkholderia thailandensis Bt4]
 gi|257140665|ref|ZP_05588927.1| peptide deformylase [Burkholderia thailandensis E264]
          Length = 167

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +D   +   +  +
Sbjct: 67  -KNELRVFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGEPFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL
Sbjct: 126 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 163


>gi|51473406|ref|YP_067163.1| peptide deformylase [Rickettsia typhi str. Wilmington]
 gi|81692314|sp|Q68XG1|DEF_RICTY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|51459718|gb|AAU03681.1| PDF [Rickettsia typhi str. Wilmington]
          Length = 175

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 103/165 (62%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  PD  L++ S+P+ +        + +MLE MY+ +G GLAAVQ+GVL R++VID++ 
Sbjct: 6   IVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNANGAGLAAVQVGVLQRILVIDIKA 65

Query: 66  HAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           H   + P  F     +NP+II  S +     EGC+S+P+ R +V R   + +RY+D + +
Sbjct: 66  HDPVERPKDFYPLFIVNPEIIEQSTELVTANEGCISLPEQRIEVMRPESVKIRYLDYHGK 125

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q + A+  LA  +QHE DHL G L +D+LS LKRD++ +K+ KL
Sbjct: 126 SQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKL 170


>gi|284159413|ref|YP_440687.3| peptide deformylase [Burkholderia thailandensis E264]
 gi|83652775|gb|ABC36838.1| peptide deformylase [Burkholderia thailandensis E264]
          Length = 179

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 21  YPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 78

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +D   +   +  +
Sbjct: 79  -KNELRVFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGEPFELDCE 137

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL
Sbjct: 138 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 175


>gi|113869635|ref|YP_728124.1| peptide deformylase [Ralstonia eutropha H16]
 gi|113528411|emb|CAJ94756.1| formylmethionine deformylase [Ralstonia eutropha H16]
          Length = 168

 Score =  134 bits (337), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSET--RDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK + I  K+ K  + R
Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERTR 167


>gi|305664803|ref|YP_003861090.1| peptide deformylase [Maribacter sp. HTCC2170]
 gi|88707925|gb|EAR00164.1| peptide deformylase [Maribacter sp. HTCC2170]
          Length = 196

 Score =  134 bits (337), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DP+LR+V + IEK    +  LI+NM E MY+  G+GLAA QIG+  RL ++D  
Sbjct: 4   PIVAYGDPVLRKVGKEIEKNLPKLDELIENMWETMYNASGVGLAAPQIGLPVRLFLVDAT 63

Query: 65  DHAH--------RKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A         RK+      VFIN K+   + +  V+ EGCLSIP+ R DV R   IT+
Sbjct: 64  PFAEDDELSEKERKDLDGFKKVFINAKMQEETGEDWVFNEGCLSIPEIREDVTRKDTITI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y D N + Q    DG+LA  +QHE DH+ GILF D LS LK+ ++  +++ + +
Sbjct: 124 TYFDENFKKQTENFDGILARIIQHEYDHIEGILFTDKLSSLKKRLLKGRLANISK 178


>gi|123965312|ref|YP_001010393.1| peptide deformylase [Prochlorococcus marinus str. MIT 9515]
 gi|158512726|sp|A2BU25|DEF_PROM5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123199678|gb|ABM71286.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 203

 Score =  134 bits (337), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 5   PLVIFP--DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL IF   + +LR  ++ I K++ D  NL  +ML+ MYS  GIGLAA Q+G+   L+VID
Sbjct: 30  PLEIFKLGNDVLRTNAKRIGKVDLDTRNLAKDMLKSMYSAKGIGLAAPQVGISKELLVID 89

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +        P++ INP+I  F +  + Y+EGCLSIP    +V R + I +R+ D   + +
Sbjct: 90  INFEDSAAEPLILINPEITAFGNTLNSYEEGCLSIPGVYLNVVRPSTIKLRFSDEMGRPR 149

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + ADGLLA C+QHE+DHL G+LF+D ++  K D+ T+   +  Q++D
Sbjct: 150 KMNADGLLARCIQHEVDHLRGVLFVDRVTS-KEDLKTELKKEGFQMKD 196


>gi|157962208|ref|YP_001502242.1| peptide deformylase [Shewanella pealeana ATCC 700345]
 gi|157847208|gb|ABV87707.1| peptide deformylase [Shewanella pealeana ATCC 700345]
          Length = 163

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R + P+  I S +   ID+++E MY TD GIGLAA Q+G L+ ++VIDL 
Sbjct: 6   ILTIPDERLKRKAVPVTDIES-VQGFIDDLIETMYDTDDGIGLAATQVGSLHAILVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  PMV INP+I+    ++   +EGCLSIP YRA V R   + V  +D   +   I
Sbjct: 65  EE--RDQPMVLINPEIVESRGEYQ-GEEGCLSIPGYRAKVNRHEGVKVSALDRQGKAFEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D  LA  LQHE+DHLNG++F DHLS LK+ +  KK+ K
Sbjct: 122 DTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKK 161


>gi|152981308|ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
 gi|151281385|gb|ABR89795.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
          Length = 178

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 98/157 (62%), Gaps = 4/157 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HA 67
           +PDP L +V++P+   +  I  L+ +M E MY   G+GLAA Q+ V  +++VID  + H 
Sbjct: 9   YPDPRLHKVAKPVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIVIDTSETHT 68

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
             +    +INP+II  S +  VY EGCLS+P     V+R A + VR  D + +   + AD
Sbjct: 69  ELR---AYINPEIIWASPEMQVYDEGCLSVPGVYDGVERHAKVKVRAFDADGKQFELEAD 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           GLLA C+QHE+DHL G +F+++LS LKR+ I  KM K
Sbjct: 126 GLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLK 162


>gi|218887129|ref|YP_002436450.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758083|gb|ACL08982.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 184

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 95/160 (59%), Gaps = 5/160 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L      I +I  +I  L  +M E MY  DGIGLAA Q+G   RL+V+D+     
Sbjct: 8   YPDPRLAVECEDITEITDEIRQLAADMAETMYRQDGIGLAAPQVGEHCRLIVVDVSGPEK 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQHQIIYAD 127
           R+  M F+NP++   + D    +EGCLS+P  YRA V RS  + +   D +     + AD
Sbjct: 68  REALMTFVNPRL-ELTGDKVDSEEGCLSVPGGYRATVTRSDTVRLTARDLDGNEVCMDAD 126

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKR---DMITKKMSK 164
           GLLA CLQHE+DHL G LFIDH+SRLKR   D   KKM K
Sbjct: 127 GLLAVCLQHEVDHLKGTLFIDHISRLKRTLYDSRVKKMQK 166


>gi|124385914|ref|YP_001028237.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|254203663|ref|ZP_04910023.1| polypeptide deformylase [Burkholderia mallei FMH]
 gi|124293934|gb|ABN03203.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|147745175|gb|EDK52255.1| polypeptide deformylase [Burkholderia mallei FMH]
          Length = 216

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 58  YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 115

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +   +  +
Sbjct: 116 -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGESFELDCE 174

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL
Sbjct: 175 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 212


>gi|325526701|gb|EGD04225.1| peptide deformylase [Burkholderia sp. TJI49]
          Length = 167

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 67  -KNELRAFINPEIIWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKL 163


>gi|78067947|ref|YP_370716.1| peptide deformylase [Burkholderia sp. 383]
 gi|77968692|gb|ABB10072.1| peptide deformylase [Burkholderia sp. 383]
          Length = 167

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+I+  SD+  +Y+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 67  -KNELRAFINPEIVWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163


>gi|172062105|ref|YP_001809757.1| peptide deformylase [Burkholderia ambifaria MC40-6]
 gi|171994622|gb|ACB65541.1| peptide deformylase [Burkholderia ambifaria MC40-6]
          Length = 167

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDISEE-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 67  -KNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163


>gi|15604081|ref|NP_220596.1| peptide deformylase [Rickettsia prowazekii str. Madrid E]
 gi|6225256|sp|Q9ZDV8|DEF_RICPR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|3860772|emb|CAA14673.1| METHIONYL-TRNA DEFORMYLASE (def) [Rickettsia prowazekii]
 gi|292571805|gb|ADE29720.1| Polypeptide deformylase [Rickettsia prowazekii Rp22]
          Length = 175

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 103/165 (62%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  PD  L++ S+P+ +        + +MLE MY+ DG GLAAVQ+G+L R++VID+++
Sbjct: 6   IVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNADGAGLAAVQVGILLRILVIDIKE 65

Query: 66  HAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   + P  F     +NP+II  S +     EGC+S+P  R +V R   + +RY+D + +
Sbjct: 66  YDPVERPKDFYPLFIVNPEIIEKSTELVTANEGCISLPKQRIEVTRPESVKIRYLDYHGK 125

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q + A+  LA  +QHE DHL G L +D+LS LKRD++ +K+ KL
Sbjct: 126 SQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKL 170


>gi|319790017|ref|YP_004151650.1| peptide deformylase [Thermovibrio ammonificans HB-1]
 gi|317114519|gb|ADU97009.1| peptide deformylase [Thermovibrio ammonificans HB-1]
          Length = 177

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--D 65
           I+PD  L+  ++ +E+ N ++++L++ M E MY   G+GLAA Q+GVL R++++DL+   
Sbjct: 6   IYPDEALKSKAQKVEEFNQELVDLVNGMFETMYKRGGVGLAANQVGVLKRVLILDLKAGT 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               KNP+V +NP+I+  S+   V +EGCLS+P     VKR+ ++ V+  + + +   I 
Sbjct: 66  EEQGKNPIVLVNPEIVA-SEGEVVKEEGCLSLPGLYRKVKRAQWVKVKAQNLDGEEIEIE 124

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +GLLA  LQHE+DHLNG++FID LS L++ +  +K  KL
Sbjct: 125 GEGLLARALQHEIDHLNGVVFIDRLSPLQKRLALEKFKKL 164


>gi|74316032|ref|YP_313772.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259]
 gi|74055527|gb|AAZ95967.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC
           25259]
          Length = 177

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 100/156 (64%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++P+E +++ I  L+D+M E MY+  GIGLAA Q+ V  R+VVID  +   
Sbjct: 9   YPDSRLHTVAKPVEAVDARIRKLVDDMAETMYAAPGIGLAATQVNVHERVVVIDTSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+  S      +EGCLS+P     V R+  +TVR +D + +   + ADG
Sbjct: 67  RDALRVFINPEIVAQSGREE-SEEGCLSVPGVFDRVTRAERVTVRALDRDGKPFELEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL G +F+D+LS LKR+ I  K+ K
Sbjct: 126 LLAVCIQHELDHLAGKVFVDYLSPLKRNRIKTKLLK 161


>gi|297537405|ref|YP_003673174.1| peptide deformylase [Methylotenera sp. 301]
 gi|297256752|gb|ADI28597.1| peptide deformylase [Methylotenera sp. 301]
          Length = 166

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 103/159 (64%), Gaps = 3/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +V++P++++++ I  LID+M E MY   GIGLAA Q+    +L++ID  +   
Sbjct: 9   YPDPRLHKVAKPVKEVDASIRRLIDDMRETMYDAPGIGLAATQVDQHIQLLIIDTSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           + +  VFINPKII  S     Y+EGCLS+P     V R+  +TV  +D N +   + A+G
Sbjct: 67  KDHLQVFINPKIIEKSG-VQDYEEGCLSVPGVYETVTRAEKVTVEALDYNGKPFTLKAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LL+ C+QHE+DHL G +F+++LS LKR  I  KM KL +
Sbjct: 126 LLSICIQHEMDHLLGKVFVEYLSPLKRSRIKNKMLKLTR 164


>gi|73543090|ref|YP_297610.1| peptide deformylase [Ralstonia eutropha JMP134]
 gi|72120503|gb|AAZ62766.1| peptide deformylase [Ralstonia eutropha JMP134]
          Length = 168

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+++++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVKEVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSET--RDALQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK++ I  K+ K  + R
Sbjct: 119 TFELDADDLLAVCIQHEMDHLLGKVFVEYLSPLKQNRIKSKLHKRERAR 167


>gi|269215460|ref|ZP_06159314.1| peptide deformylase [Slackia exigua ATCC 700122]
 gi|269130947|gb|EEZ62022.1| peptide deformylase [Slackia exigua ATCC 700122]
          Length = 187

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 86/144 (59%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP LR+V    +  +  +  L   M + MY+ +G GLAA Q+GVL RL+VID   
Sbjct: 13  VLAYPDPTLRQVCEDCDPADKSLRKLARRMAKTMYADNGCGLAAPQVGVLKRLIVIDCDQ 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            +  KNP+  +NP +I       V +EGCLS+P     ++R A+  VRY D N +  II 
Sbjct: 73  DSGAKNPITLLNPTVIETRGPEVVEEEGCLSVPGITVPIRRPAYAIVRYTDLNGEDWIIE 132

Query: 126 ADGLLATCLQHELDHLNGILFIDH 149
            DGLLA CLQHE+DHLNGI   + 
Sbjct: 133 GDGLLARCLQHEIDHLNGITLFES 156


>gi|134284113|ref|ZP_01770807.1| polypeptide deformylase [Burkholderia pseudomallei 305]
 gi|76578939|gb|ABA48414.1| peptide deformylase [Burkholderia pseudomallei 1710b]
 gi|134244565|gb|EBA44669.1| polypeptide deformylase [Burkholderia pseudomallei 305]
          Length = 201

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 43  YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 100

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +   +  +
Sbjct: 101 -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFELDCE 159

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL
Sbjct: 160 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 197


>gi|15892597|ref|NP_360311.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
 gi|23396566|sp|Q92HU7|DEFL_RICCN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|15619763|gb|AAL03212.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
          Length = 183

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 106/163 (65%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  N-NKSSPIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+++LNG  F+D LS+LKRD + KKM K ++L
Sbjct: 129 AEGFLATVIQHEIEYLNGKTFLDSLSKLKRDTLLKKMLKHIKL 171


>gi|160947099|ref|ZP_02094266.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270]
 gi|158446233|gb|EDP23228.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270]
          Length = 164

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 91/138 (65%), Gaps = 4/138 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR+ +R +E I+  I NL+++M E MY++DG+GLA  QIG+L RLV ID+ D     
Sbjct: 11  DPVLRKKARKVEVIDDKIKNLLEDMAETMYNSDGVGLACPQIGILKRLVTIDVGDE---H 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+  S +  V  EGCLSIPD R  VKR   +  +Y D +   QII A GLL
Sbjct: 68  GLLKMINPEILESSGE-QVGPEGCLSIPDVRGFVKRPEKVKFKYTDVDENEQIIDATGLL 126

Query: 131 ATCLQHELDHLNGILFID 148
           A C+ HE+DHLNGILF D
Sbjct: 127 AVCICHEIDHLNGILFTD 144


>gi|126449977|ref|YP_001081879.1| polypeptide deformylase [Burkholderia mallei NCTC 10247]
 gi|251767985|ref|ZP_02269083.2| peptide deformylase [Burkholderia mallei PRL-20]
 gi|254177135|ref|ZP_04883792.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|126242847|gb|ABO05940.1| peptide deformylase [Burkholderia mallei NCTC 10247]
 gi|160698176|gb|EDP88146.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|243061150|gb|EES43336.1| peptide deformylase [Burkholderia mallei PRL-20]
          Length = 179

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 21  YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 78

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +   +  +
Sbjct: 79  -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGESFELDCE 137

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL
Sbjct: 138 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 175


>gi|186684172|ref|YP_001867368.1| peptide deformylase [Nostoc punctiforme PCC 73102]
 gi|186466624|gb|ACC82425.1| peptide deformylase [Nostoc punctiforme PCC 73102]
          Length = 187

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 92/141 (65%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I K++ ++  ++  ML+ MYS DGIGLAA Q+G+  +L+VIDL+      
Sbjct: 24  DRVLRQAAKRISKVDDELRQMVREMLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPENAAN 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP I   S D SV +EGCLSIP+   DVKR   + + Y D   + + + A+ LL
Sbjct: 84  PPLVLINPTIKQVSRDISVAEEGCLSIPNVYLDVKRPEVVEIAYKDEYGRPRTLKANDLL 143

Query: 131 ATCLQHELDHLNGILFIDHLS 151
             C+QHE+DHLNG++F+D + 
Sbjct: 144 GRCIQHEMDHLNGVVFVDRVE 164


>gi|52842801|ref|YP_096600.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54295432|ref|YP_127847.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
 gi|54298584|ref|YP_124953.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
 gi|148358671|ref|YP_001249878.1| peptide deformylase [Legionella pneumophila str. Corby]
 gi|296108239|ref|YP_003619940.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|52629912|gb|AAU28653.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|53752369|emb|CAH13801.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
 gi|53755264|emb|CAH16758.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
 gi|148280444|gb|ABQ54532.1| peptide deformylase [Legionella pneumophila str. Corby]
 gi|295650141|gb|ADG25988.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|307611474|emb|CBX01145.1| hypothetical protein LPW_28441 [Legionella pneumophila 130b]
          Length = 170

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LR++++P+E  +  +  LI++M + MY   G+GLAA QIGV  RL V
Sbjct: 1   MAIRKILYLPDERLRKIAKPVETFDESLQTLINDMFDTMYDARGVGLAAPQIGVSLRLSV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     +K  +V +NP+I++ S     ++EGCLS+P     V R+  +TV+ +D   +
Sbjct: 61  IDIV--GDKKEQIVIVNPEIVS-SHGEKEFEEGCLSVPGAYDTVVRAEKVTVKALDRFGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  +GLLA CLQHE+DH+NG LF+D LS LKR M  +K+ K  +L+
Sbjct: 118 PFEITGEGLLAECLQHEIDHMNGKLFVDMLSPLKRMMARRKLDKFKRLQ 166


>gi|254424040|ref|ZP_05037758.1| peptide deformylase [Synechococcus sp. PCC 7335]
 gi|196191529|gb|EDX86493.1| peptide deformylase [Synechococcus sp. PCC 7335]
          Length = 187

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 65/141 (46%), Positives = 94/141 (66%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ + KI++ + +L+  ML+ MYS DGIGLAA Q+GV  +L+VID        
Sbjct: 24  DRVLRQPAKRVAKIDNALRDLVRKMLQTMYSEDGIGLAAPQVGVNKQLLVIDADPENEAA 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           + +V +NPKII +SD+ +  QEGCLSIP    DV R A I V + D N + + + AD LL
Sbjct: 84  SALVLVNPKIIRYSDELAAGQEGCLSIPGVYLDVIRPAAIEVSFKDENGRPRKLKADDLL 143

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  +QHE+DHLNG+LF+D + 
Sbjct: 144 ARVIQHEMDHLNGVLFVDRVE 164


>gi|238028945|ref|YP_002913176.1| polypeptide deformylase [Burkholderia glumae BGR1]
 gi|237878139|gb|ACR30472.1| Polypeptide deformylase [Burkholderia glumae BGR1]
          Length = 167

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+  ++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID  +   
Sbjct: 9   YPDKRLHKVAKPVAVVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDTSED-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+  SD   +Y+EGCLS+P    +V+R   + VR +D   Q   +  +
Sbjct: 67  -KNELRVFINPEIVWSSDGKQIYEEGCLSVPGVYDEVERPDHVRVRALDVQGQQFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK++ I  KM KL
Sbjct: 126 GLLAVCVQHEMDHLLGRVFVQYLSPLKQNRIKSKMKKL 163


>gi|53724672|ref|YP_101982.1| peptide deformylase [Burkholderia mallei ATCC 23344]
 gi|67642453|ref|ZP_00441209.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
 gi|121600699|ref|YP_994101.1| peptide deformylase [Burkholderia mallei SAVP1]
 gi|254208639|ref|ZP_04914987.1| polypeptide deformylase [Burkholderia mallei JHU]
 gi|254360307|ref|ZP_04976577.1| polypeptide deformylase [Burkholderia mallei 2002721280]
 gi|52428095|gb|AAU48688.1| polypeptide deformylase [Burkholderia mallei ATCC 23344]
 gi|121229509|gb|ABM52027.1| polypeptide deformylase [Burkholderia mallei SAVP1]
 gi|147750515|gb|EDK57584.1| polypeptide deformylase [Burkholderia mallei JHU]
 gi|148029547|gb|EDK87452.1| polypeptide deformylase [Burkholderia mallei 2002721280]
 gi|238523609|gb|EEP87046.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
          Length = 167

 Score =  133 bits (334), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +   +  +
Sbjct: 67  -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGESFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL
Sbjct: 126 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 163


>gi|189184237|ref|YP_001938022.1| peptide deformylase [Orientia tsutsugamushi str. Ikeda]
 gi|238692021|sp|B3CTU1|DEF_ORITI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189181008|dbj|BAG40788.1| methionyl-tRNA deformylase [Orientia tsutsugamushi str. Ikeda]
          Length = 181

 Score =  133 bits (334), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 102/169 (60%), Gaps = 9/169 (5%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           L+  PDPIL++V+ P++ +N  I  L+D+MLE MY   G+GLAA Q+ V  R++V+DL  
Sbjct: 6   LITAPDPILKKVASPVDTVNDSIRQLMDDMLETMYHNHGVGLAAPQVAVSKRIIVLDLSK 65

Query: 66  ---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                    ++  K P+  +NP +   S+  +  +EGCLS+P    +V R   I V Y+D
Sbjct: 66  VDIKEDNITNSEYKYPLFMVNPIVKAISNQTATAKEGCLSLPKQAIEVSRYHEIQVTYLD 125

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              +   + A+G LA  +QHE+DHL+GIL +D+LS LK++     +SK+
Sbjct: 126 YYNKLTTLNAEGWLARAIQHEVDHLDGILLVDYLSNLKKEAALNTLSKI 174


>gi|167561029|ref|ZP_02353945.1| peptide deformylase [Burkholderia oklahomensis EO147]
 gi|167568291|ref|ZP_02361165.1| peptide deformylase [Burkholderia oklahomensis C6786]
          Length = 167

 Score =  133 bits (334), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+   D   VY+EGCLS+P    +V+R   + VR ++   +   I  +
Sbjct: 67  -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALNEQGESFEIDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL
Sbjct: 126 GLLAVCVQHEMDHLMGRVFVQYLSSLKQSRIKTKMKKL 163


>gi|330445859|ref|ZP_08309511.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490050|dbj|GAA04008.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 173

 Score =  133 bits (334), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 105/163 (64%), Gaps = 5/163 (3%)

Query: 10  PDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67
           P+P LR  +  +  + ++ I  LID+ML+ MY T +GIGLAA Q+G    ++VIDL +  
Sbjct: 10  PNPKLRVQAEEVTDVKAEHIQTLIDDMLQTMYETGNGIGLAAPQVGRKESIIVIDLSEE- 68

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R  P VF+NPKI+   ++  V QEGCLS+PDY ADV+R   I +  +D +     +  D
Sbjct: 69  -RNEPQVFVNPKIVR-GENPVVGQEGCLSVPDYYADVERFEKIELTALDRDGNDIHLERD 126

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             LA  LQHE+DHL GILFID+LS LKR M  KK+ K +++++
Sbjct: 127 DFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKYLKMQE 169


>gi|325983533|ref|YP_004295935.1| peptide deformylase [Nitrosomonas sp. AL212]
 gi|325533052|gb|ADZ27773.1| peptide deformylase [Nitrosomonas sp. AL212]
          Length = 167

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V+ P+ +I   I  LI++M E MY+  GIGLAA Q+ V  R++VID  +   
Sbjct: 9   YPDEKLHTVAAPVSQITDKIRTLINDMAETMYAAPGIGLAATQVDVHERVIVIDTSEA-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R + +V INP+I T S+  S Y+EGCLS+P     V+R+  + VR ++   +  ++ ADG
Sbjct: 67  RNDLLVLINPEI-TASNGISDYEEGCLSVPGIYGKVQRAESVKVRALNAQGESFVLDADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++ SRLK+     K+ K
Sbjct: 126 LLAVCIQHEMDHLAGKVFVEYWSRLKQVRTLAKLKK 161


>gi|83589748|ref|YP_429757.1| peptide deformylase [Moorella thermoacetica ATCC 39073]
 gi|123766806|sp|Q2RK25|DEF_MOOTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|83572662|gb|ABC19214.1| peptide deformylase [Moorella thermoacetica ATCC 39073]
          Length = 155

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 97/147 (65%), Gaps = 6/147 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++   DP+LR  S+P+ KI S++  L+DN+ + MY   G+GLAA QIGVL R++V+D+ +
Sbjct: 6   ILTLGDPLLREKSQPVRKITSNVWKLLDNLADTMYDAPGVGLAAPQIGVLKRVIVVDVGE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                     INP++I  S +  V  EGCLSIP  + +V R+A +TVR +D + + + I 
Sbjct: 66  GLTE-----LINPEVIAASGE-EVGAEGCLSIPGAQGEVPRAAVVTVRGLDRHGRVREIR 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+GL A  LQHE+DHL+GILFID + R
Sbjct: 120 AEGLYARALQHEIDHLDGILFIDKVVR 146


>gi|229514651|ref|ZP_04404112.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229348631|gb|EEO13589.1| peptide deformylase [Vibrio cholerae TMA 21]
          Length = 168

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP LR  S+ +  + S +  LID++L+ +Y+TD GIGLAA Q+G    +VVIDL 
Sbjct: 6   ILTAPDPRLRLQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D+  R  P+V INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D   +   I
Sbjct: 65  DN--RDQPLVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLCI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|161526293|ref|YP_001581305.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|160343722|gb|ABX16808.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
          Length = 181

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 23  YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 80

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 81  -KNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGETFELDCE 139

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 140 GLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKL 177


>gi|126441948|ref|YP_001057204.1| polypeptide deformylase [Burkholderia pseudomallei 668]
 gi|126453149|ref|YP_001064443.1| polypeptide deformylase [Burkholderia pseudomallei 1106a]
 gi|217424946|ref|ZP_03456442.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|226194603|ref|ZP_03790198.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
 gi|237810338|ref|YP_002894789.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|242315752|ref|ZP_04814768.1| peptide deformylase [Burkholderia pseudomallei 1106b]
 gi|254182253|ref|ZP_04888850.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|254197101|ref|ZP_04903524.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|126221441|gb|ABN84947.1| peptide deformylase [Burkholderia pseudomallei 668]
 gi|126226791|gb|ABN90331.1| peptide deformylase [Burkholderia pseudomallei 1106a]
 gi|169653843|gb|EDS86536.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|184212791|gb|EDU09834.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|217391966|gb|EEC31992.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|225933304|gb|EEH29296.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
 gi|237506162|gb|ACQ98480.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|242138991|gb|EES25393.1| peptide deformylase [Burkholderia pseudomallei 1106b]
          Length = 179

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 21  YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 78

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +   +  +
Sbjct: 79  -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFELDCE 137

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL
Sbjct: 138 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 175


>gi|221201858|ref|ZP_03574895.1| peptide deformylase [Burkholderia multivorans CGD2M]
 gi|221207636|ref|ZP_03580644.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221214668|ref|ZP_03587638.1| peptide deformylase [Burkholderia multivorans CGD1]
 gi|221165558|gb|EED98034.1| peptide deformylase [Burkholderia multivorans CGD1]
 gi|221172482|gb|EEE04921.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221178278|gb|EEE10688.1| peptide deformylase [Burkholderia multivorans CGD2M]
          Length = 181

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 23  YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 80

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 81  -KNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGETFELDCE 139

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 140 GLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKL 177


>gi|167623826|ref|YP_001674120.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
 gi|167353848|gb|ABZ76461.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
          Length = 163

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R + P+  I S +   ID+++E MY TD GIGLAA Q+G L+ ++VIDL 
Sbjct: 6   ILTIPDERLKRKAVPVTDIES-VQGFIDDLIETMYDTDDGIGLAATQVGSLHAILVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R  PMV INP+ +    ++   +EGCLSIP YRA V R   + V  +D + +   I
Sbjct: 65  DE--RDQPMVLINPEFLESRGEYQ-GEEGCLSIPGYRAKVNRHQGVKVTALDRHGKAFEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D  LA  LQHE+DHLNG++F DHLS LK+ +  KK+ K
Sbjct: 122 DTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKK 161


>gi|303233917|ref|ZP_07320566.1| peptide deformylase [Finegoldia magna BVS033A4]
 gi|302494842|gb|EFL54599.1| peptide deformylase [Finegoldia magna BVS033A4]
          Length = 162

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 91/150 (60%), Gaps = 3/150 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR+ SR +EKI++ I  + ++M E MY   GIGLA VQ+G+L R+VVID+QD   + 
Sbjct: 11  DPILRKKSREVEKIDNRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK- 69

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             MV INPKII  S+D  +  EGCLS+P     V+R   + V Y D N   Q +      
Sbjct: 70  --MVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGNTQRVTGTDYK 127

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           A C  HELDHL+G+L+ D +  L  + + +
Sbjct: 128 AHCFCHELDHLDGVLYTDKVLNLSEEEVER 157


>gi|296161362|ref|ZP_06844169.1| peptide deformylase [Burkholderia sp. Ch1-1]
 gi|295888348|gb|EFG68159.1| peptide deformylase [Burkholderia sp. Ch1-1]
          Length = 167

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 103/162 (63%), Gaps = 2/162 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++VID+ D
Sbjct: 6   IINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIVIDVSD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +   + 
Sbjct: 66  D--HNELLAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFEMD 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL  
Sbjct: 124 CEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLAH 165


>gi|167585076|ref|ZP_02377464.1| peptide deformylase [Burkholderia ubonensis Bu]
          Length = 167

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 101/157 (64%), Gaps = 2/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDISED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +     FINP+++  SD   VY+EGCLS+P    +V+R   + VR +D   +   +  +G
Sbjct: 67  KSELRAFINPELVWSSDAKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGETFELDCEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 127 LLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKSKMKKL 163


>gi|189348993|ref|YP_001944621.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|189333015|dbj|BAG42085.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
          Length = 167

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 67  -KNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGETFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 126 GLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKL 163


>gi|91781430|ref|YP_556636.1| peptide deformylase [Burkholderia xenovorans LB400]
 gi|91685384|gb|ABE28584.1| peptide deformylase [Burkholderia xenovorans LB400]
          Length = 167

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 103/162 (63%), Gaps = 2/162 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++VID+ D
Sbjct: 6   IINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIVIDVSD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +   + 
Sbjct: 66  D--HNELLTFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFEMD 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL  
Sbjct: 124 CEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLAH 165


>gi|325534093|pdb|3QU1|A Chain A, Peptide Deformylase From Vibrio Cholerae
 gi|325534094|pdb|3QU1|B Chain B, Peptide Deformylase From Vibrio Cholerae
          Length = 171

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP LR  S+ +  + S +  LID++L+ +Y+TD GIGLAA Q+G    +VVIDL 
Sbjct: 9   ILTAPDPRLRVQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 67

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D+  R  P+V INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D   +   I
Sbjct: 68  DN--RDQPLVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRI 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 125 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 169


>gi|163859048|ref|YP_001633346.1| peptide deformylase [Bordetella petrii DSM 12804]
 gi|163262776|emb|CAP45079.1| polypeptide deformylase [Bordetella petrii]
          Length = 170

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L + ++P+  ++  I  L+ +M + MY   G+GLAA Q+ V  R+VVID+ +  +
Sbjct: 9   YPDPRLHKKAKPVAVVDDRIRKLVRDMADTMYDAPGVGLAATQVDVHERVVVIDVSEEGN 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                V INP+I   SD+   Y+EGCLS+P    +V+R+A I  R +D +       A+G
Sbjct: 69  ELR--VLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRYRALDADGNPYEAEAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL+G +F+++LS LK++ I  K+ K
Sbjct: 127 LLAVCVQHELDHLDGKVFVEYLSSLKQNRIKTKLKK 162


>gi|53717762|ref|YP_106748.1| peptide deformylase [Burkholderia pseudomallei K96243]
 gi|162210090|ref|YP_331761.2| peptide deformylase [Burkholderia pseudomallei 1710b]
 gi|167717517|ref|ZP_02400753.1| polypeptide deformylase [Burkholderia pseudomallei DM98]
 gi|167736559|ref|ZP_02409333.1| polypeptide deformylase [Burkholderia pseudomallei 14]
 gi|167813633|ref|ZP_02445313.1| polypeptide deformylase [Burkholderia pseudomallei 91]
 gi|167822177|ref|ZP_02453648.1| polypeptide deformylase [Burkholderia pseudomallei 9]
 gi|167843768|ref|ZP_02469276.1| polypeptide deformylase [Burkholderia pseudomallei B7210]
 gi|167892270|ref|ZP_02479672.1| polypeptide deformylase [Burkholderia pseudomallei 7894]
 gi|167900763|ref|ZP_02487968.1| polypeptide deformylase [Burkholderia pseudomallei NCTC 13177]
 gi|167908987|ref|ZP_02496078.1| polypeptide deformylase [Burkholderia pseudomallei 112]
 gi|167917029|ref|ZP_02504120.1| polypeptide deformylase [Burkholderia pseudomallei BCC215]
 gi|254188218|ref|ZP_04894730.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254258214|ref|ZP_04949268.1| peptide deformylase [Burkholderia pseudomallei 1710a]
 gi|52208176|emb|CAH34107.1| peptide deformylase [Burkholderia pseudomallei K96243]
 gi|157935898|gb|EDO91568.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254216903|gb|EET06287.1| peptide deformylase [Burkholderia pseudomallei 1710a]
          Length = 167

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +   +  +
Sbjct: 67  -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL
Sbjct: 126 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 163


>gi|153802627|ref|ZP_01957213.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|124121843|gb|EAY40586.1| polypeptide deformylase [Vibrio cholerae MZO-3]
          Length = 168

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP LR  S+ +  + S +  LID++L+ +Y+TD GIGLAA Q+G    +VVIDL 
Sbjct: 6   ILTAPDPRLRLQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D+  R  P+V INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D   +   I
Sbjct: 65  DN--RDQPLVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|254295706|ref|ZP_04963163.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
 gi|157805961|gb|EDO83131.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
          Length = 165

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 7   YPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSED-- 64

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +   +  +
Sbjct: 65  -KNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFELDCE 123

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL
Sbjct: 124 GLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKL 161


>gi|15600920|ref|NP_232550.1| peptide deformylase [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|121587986|ref|ZP_01677739.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121729670|ref|ZP_01682131.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|147672038|ref|YP_001215964.1| peptide deformylase [Vibrio cholerae O395]
 gi|153819711|ref|ZP_01972378.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|153822662|ref|ZP_01975329.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|153825061|ref|ZP_01977728.1| peptide deformylase [Vibrio cholerae MZO-2]
 gi|153830707|ref|ZP_01983374.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|227811776|ref|YP_002811786.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|229506685|ref|ZP_04396194.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229510520|ref|ZP_04400000.1| peptide deformylase [Vibrio cholerae B33]
 gi|229517348|ref|ZP_04406793.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229527868|ref|ZP_04417259.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229605159|ref|YP_002875863.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|254850416|ref|ZP_05239766.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|297579720|ref|ZP_06941647.1| polypeptide deformylase [Vibrio cholerae RC385]
 gi|298500007|ref|ZP_07009813.1| peptide deformylase [Vibrio cholerae MAK 757]
 gi|23396575|sp|Q9KN16|DEF2_VIBCH RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|9657539|gb|AAF96063.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547784|gb|EAX57873.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121628568|gb|EAX61048.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|126509754|gb|EAZ72348.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|126519819|gb|EAZ77042.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|146314421|gb|ABQ18961.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|148873804|gb|EDL71939.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|149741386|gb|EDM55420.1| peptide deformylase [Vibrio cholerae MZO-2]
 gi|227010918|gb|ACP07129.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|227014777|gb|ACP10986.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|229334230|gb|EEN99715.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229345384|gb|EEO10357.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229352965|gb|EEO17905.1| peptide deformylase [Vibrio cholerae B33]
 gi|229357036|gb|EEO21954.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229371645|gb|ACQ62067.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|254846121|gb|EET24535.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|297535366|gb|EFH74200.1| polypeptide deformylase [Vibrio cholerae RC385]
 gi|297541988|gb|EFH78039.1| peptide deformylase [Vibrio cholerae MAK 757]
          Length = 168

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP LR  S+ +  + S +  LID++L+ +Y+TD GIGLAA Q+G    +VVIDL 
Sbjct: 6   ILTAPDPRLRVQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D+  R  P+V INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D   +   I
Sbjct: 65  DN--RDQPLVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|312797602|ref|YP_004030524.1| peptide deformylase [Burkholderia rhizoxinica HKI 454]
 gi|312169377|emb|CBW76380.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI
           454]
          Length = 169

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 103/161 (63%), Gaps = 2/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+E+++  I  L+ +M E MY+  G+GLAA Q+ V  R+VVID+ D   
Sbjct: 11  YPDKRLHKVAKPVERVDERIRKLVADMAETMYAASGVGLAATQVDVHERVVVIDVSDT-- 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+  SD+  + +EGCLS+P     V+R+  + VR ++ N +   +  +G
Sbjct: 69  RDALRVFINPEIVWSSDERDINEEGCLSVPRICDSVERAERVRVRALNENGESFELECEG 128

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHL G +F+++LS LK+  I   M K  + R
Sbjct: 129 LLAICIQHEMDHLLGKVFVEYLSPLKQMRIKTTMKKFERAR 169


>gi|134297376|ref|YP_001121111.1| peptide deformylase [Burkholderia vietnamiensis G4]
 gi|134140533|gb|ABO56276.1| peptide deformylase [Burkholderia vietnamiensis G4]
          Length = 167

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+I+  SD   VY+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 67  -KNELRAFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNERGEPFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163


>gi|170734476|ref|YP_001766423.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
 gi|254246863|ref|ZP_04940184.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184]
 gi|124871639|gb|EAY63355.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184]
 gi|169817718|gb|ACA92301.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
          Length = 167

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 103/158 (65%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+I+  SD   +Y+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 67  -KNELRAFINPEIVWSSDAKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163


>gi|307822764|ref|ZP_07652995.1| peptide deformylase [Methylobacter tundripaludum SV96]
 gi|307736368|gb|EFO07214.1| peptide deformylase [Methylobacter tundripaludum SV96]
          Length = 168

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 100/157 (63%), Gaps = 3/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR+ +  ++ ++  I  L+D+MLE MY + G+GLAA Q+ V  R+VVID+ +   
Sbjct: 9   FPDERLRKKAAIVKTVDDKIKKLVDDMLETMYESHGVGLAATQVNVHQRVVVIDVSEE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P+  INP+II   D     +EGCLS+P +   V+R+  I V+ +D   +   + A  
Sbjct: 67  KDAPLCLINPEIIE-KDGVKESEEGCLSVPGFFEKVERAEHIIVKALDREGEPFELSARD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA C+QHELDHL+G LF+D++S LKR  I KK+ K+
Sbjct: 126 LLAVCVQHELDHLDGKLFVDYISPLKRQRIKKKLEKI 162


>gi|300692919|ref|YP_003753914.1| peptide deformylase [Ralstonia solanacearum PSI07]
 gi|299079979|emb|CBJ52656.1| peptide deformylase [Ralstonia solanacearum PSI07]
          Length = 169

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 100/156 (64%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +V++P+ +++  I  L+ +M E MY   GIGLAA Q+ V  R++ ID+ +   
Sbjct: 9   YPDPRLHKVAKPVAEVDGRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +   + ADG
Sbjct: 67  RDELRVFINPEILWASKERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGETFELEADG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LK++ I  K+ K
Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 162


>gi|298370618|ref|ZP_06981933.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281228|gb|EFI22718.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 167

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V++ + K++  I  L+ +M E MY   GIGLAA Q+ V  R+VV+DL +   
Sbjct: 9   YPDERLHTVAKSVGKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVVMDLTED-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R  P VFINP +I   D  + Y+EGCLS+P     V R+  + V  ++   +   + ADG
Sbjct: 67  RSEPRVFINP-VIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHELDHL GI+F++ LS+LK+  I  K+ K
Sbjct: 126 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKK 161


>gi|261344111|ref|ZP_05971755.1| peptide deformylase [Providencia rustigianii DSM 4541]
 gi|282567702|gb|EFB73237.1| peptide deformylase [Providencia rustigianii DSM 4541]
          Length = 168

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 100/158 (63%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+    + +  LID+++E MYSTD GIGLAA QI     ++
Sbjct: 1   MAVREIIEIPDERLRIKCAPVTDFAA-VQTLIDDLIETMYSTDTGIGLAAPQIAETKAIM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +   R  PMVFINP+II  S+  + YQEGCLS+PD  ADV R   + V+  D + 
Sbjct: 60  VIDISEE--RNQPMVFINPEIIE-SEGETSYQEGCLSVPDVYADVPRFQRVKVKAFDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              I+ +D  LA  +QHE+DHLNG +FIDHLS LKR+M
Sbjct: 117 NEFIVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154


>gi|212709522|ref|ZP_03317650.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM
           30120]
 gi|212687860|gb|EEB47388.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM
           30120]
          Length = 168

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 100/158 (63%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+    + +  L+D+++E MYSTD GIGLAA QI     ++
Sbjct: 1   MAVREIIEIPDERLRIQCSPVTDFAA-VQTLVDDLIETMYSTDNGIGLAATQIAETKAIM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +   R  PMVFINP+II  S+  + YQEGCLS+PD  ADV R   + V+  D + 
Sbjct: 60  VIDISEE--RNEPMVFINPEIIE-SEGETSYQEGCLSVPDVYADVPRFLRVKVKAFDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              ++ +D  LA  +QHE+DHLNG +FIDHLS LKR+M
Sbjct: 117 NEFVVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154


>gi|302380585|ref|ZP_07269050.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3]
 gi|302311528|gb|EFK93544.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3]
          Length = 162

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 3/150 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR+ SR +EKI+  I  + ++M E MY   GIGLA VQ+G+L R+VVID+QD   + 
Sbjct: 11  DPILRKKSREVEKIDDRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK- 69

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             MV INPKII  S+D  +  EGCLS+P     V+R   + V Y D N   Q +      
Sbjct: 70  --MVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGNTQRVTGTDYK 127

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           A C  HELDHL+G+L+ D +  L  + + +
Sbjct: 128 AHCFCHELDHLDGVLYTDKVLNLSEEEVER 157


>gi|307728142|ref|YP_003905366.1| peptide deformylase [Burkholderia sp. CCGE1003]
 gi|307582677|gb|ADN56075.1| peptide deformylase [Burkholderia sp. CCGE1003]
          Length = 167

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++VID+ D AH
Sbjct: 9   YPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSD-AH 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            +  + FINP+I+  S++  + +EGCLS+P    +V+R+  + VR ++   +   +  +G
Sbjct: 68  DQ-LLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFEMDCEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G +F+++LS LK+  I  KM KL  
Sbjct: 127 LLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLAH 165


>gi|169824358|ref|YP_001691969.1| polypeptide deformylase [Finegoldia magna ATCC 29328]
 gi|238687734|sp|B0S139|DEF_FINM2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167831163|dbj|BAG08079.1| polypeptide deformylase [Finegoldia magna ATCC 29328]
          Length = 162

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 91/150 (60%), Gaps = 3/150 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR+ SR +EKI+  I  ++++M E MY   GIGLA VQ+G+L R+VVID+QD   + 
Sbjct: 11  DPILRKKSREVEKIDDRIKQIVEDMFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK- 69

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             MV INPKII  S++  +  EGCLS+P     V+R   + V Y D N   Q +      
Sbjct: 70  --MVLINPKIIEKSEEKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGNTQRVMGTDYK 127

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           A C  HELDHL+G+L+ D +  L  + + +
Sbjct: 128 AHCFCHELDHLDGVLYTDKVLNLSEEEVER 157


>gi|94971313|ref|YP_593361.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
 gi|94553363|gb|ABF43287.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
          Length = 170

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 1/163 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V   DP+L R +  + + +  +  L+++M E MY   G+GLAA QIG+  R+ V+D+ 
Sbjct: 4   PIVKLGDPVLERPAAAVTEFDDGLKKLVEDMFESMYDAHGVGLAAPQIGIGKRIAVVDVT 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +V INP+II  +D     QEGCLSIPD+R  V R+  +TV+  D   +    
Sbjct: 64  FKEDPNAKLVLINPEII-LTDGRQTSQEGCLSIPDFREKVTRARRVTVKAQDLTGKWFEH 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + LLA    HE DHLNG L+I H+S LKRD+I +K+ KL++
Sbjct: 123 TGEDLLARAFLHETDHLNGKLYISHVSALKRDLIKRKVKKLIK 165


>gi|94676503|ref|YP_588858.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|123384127|sp|Q1LT56|DEF_BAUCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|94219653|gb|ABF13812.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 167

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 107/163 (65%), Gaps = 3/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PD  LR++S+P+ KIN+ I  ++ +M + MY  +GIGLAA Q+ +   ++VID+ 
Sbjct: 5   PILYYPDHRLRQISKPVNKINNSIYRIVYDMFDTMYHKNGIGLAAPQVNINLNIIVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           ++  ++  +V INP+++  S +  ++ EGCLSIP+    V R+  I VR +D N     +
Sbjct: 65  ENKEQR--LVLINPELLAKSGETGIH-EGCLSIPEQHGFVPRAKNIKVRALDLNGNSFNL 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + L A C+QHE+DHL G LFID+LS LKR  + KKM +L++
Sbjct: 122 ETNDLQAICIQHEMDHLVGKLFIDYLSPLKRQRLLKKMKQLIR 164


>gi|300705526|ref|YP_003747129.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
 gi|299073190|emb|CBJ44548.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
          Length = 169

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA QI V  R++ ID+ +   
Sbjct: 9   YPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGVGLAATQIDVHERVITIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +   + ADG
Sbjct: 67  RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELEADG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LK++ I  K+ K
Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 162


>gi|241664932|ref|YP_002983292.1| peptide deformylase [Ralstonia pickettii 12D]
 gi|309780262|ref|ZP_07675013.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
 gi|240866959|gb|ACS64620.1| peptide deformylase [Ralstonia pickettii 12D]
 gi|308920965|gb|EFP66611.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
          Length = 171

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++ ID+ +   
Sbjct: 9   YPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVITIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+  SD+  V+ EGCLS+PD    V R A + VR ++   +   + AD 
Sbjct: 67  RDELRVFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGETFELEADD 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LK+  I  K+ K
Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKK 162


>gi|238926274|ref|ZP_04658034.1| peptide deformylase [Selenomonas flueggei ATCC 43531]
 gi|238885954|gb|EEQ49592.1| peptide deformylase [Selenomonas flueggei ATCC 43531]
          Length = 160

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 93/146 (63%), Gaps = 4/146 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+L++ + PIE++      L+D+M E MY+ DG+GLAA Q+G   R+VVID+QD     
Sbjct: 15  DPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVVIDVQDE---H 71

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  +NP +IT  +      EGCLS+P    DV+R+  +TV Y D  ++ + + A+GLL
Sbjct: 72  GLLELVNP-VITMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSRRRTLTAEGLL 130

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRD 156
           A C+QHE DHL G LFID   RL+++
Sbjct: 131 ARCIQHECDHLEGRLFIDIAVRLRKE 156


>gi|157363555|ref|YP_001470322.1| peptide deformylase [Thermotoga lettingae TMO]
 gi|167012066|sp|A8F524|DEF_THELT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157314159|gb|ABV33258.1| peptide deformylase [Thermotoga lettingae TMO]
          Length = 171

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 110/168 (65%), Gaps = 9/168 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MVKK + +  DP+LR+ S+ +E+++   ++LI ++ E MY+TDGIGLAA QIGV  R+ V
Sbjct: 1   MVKK-IRLLGDPVLRKKSKNVERVDETTISLIKDLFETMYATDGIGLAAPQIGVSLRIFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VFINP+II  S++  + +EGCLS+P+   DV+RS  +TVRYM+ + +
Sbjct: 60  MD------DGKPRVFINPEIIYKSEEKEIAEEGCLSVPEVFEDVERSKEVTVRYMNEHGE 113

Query: 121 H-QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             +  + D   A  +QHE DHL G+LFID +   +R  I KK+ ++V+
Sbjct: 114 EVEESFVD-YSARVVQHEYDHLQGVLFIDLIPSSRRFAIRKKLIEIVR 160


>gi|322384330|ref|ZP_08058028.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150832|gb|EFX44269.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 160

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 4/156 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V+ PDP+LR  ++P+ K NS +  L+D+M + MY  +G+GLAA Q+G+L R +V+D+ D
Sbjct: 6   IVMDPDPVLREKAKPVTKFNSSLHKLLDDMADTMYENEGVGLAAPQVGILKRAIVMDVGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  +NP+I+  S +  +  EGCLSIPD + DV+R   +TV+  D N    I+ 
Sbjct: 66  E---HGLIELVNPEIVATSGE-QIGPEGCLSIPDLQGDVRRPMNVTVKGQDRNGNEVIVE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              LLA C+ HE+DHLNGILF D   +L R+ + + 
Sbjct: 122 GTELLARCIMHEVDHLNGILFTDLALKLYRNELEEN 157


>gi|170694015|ref|ZP_02885171.1| peptide deformylase [Burkholderia graminis C4D1M]
 gi|170141087|gb|EDT09259.1| peptide deformylase [Burkholderia graminis C4D1M]
          Length = 167

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++VID+ D AH
Sbjct: 9   YPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSD-AH 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            +  + FINP+I+  S++  + +EGCLS+P    +V+R+  + VR ++   +   +  +G
Sbjct: 68  DQ-LLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFEMDCEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G +F+++LS LK+  I  KM KL  
Sbjct: 127 LLAVCIQHEMDHLMGHVFVEYLSPLKQTRIKSKMKKLAH 165


>gi|319945035|ref|ZP_08019297.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
 gi|319741605|gb|EFV94030.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
          Length = 170

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  V+  +  ++  I  L+ +M E MY+  GIGLAA Q+ V  R+VVID+ +   
Sbjct: 9   YPDARLHTVAERVPVVDDRIRKLVADMAETMYAAPGIGLAATQVNVHERVVVIDITET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                VFINP+I   SD    Y+EGCLSIP     V+R   +TV  +  + +   + ADG
Sbjct: 67  HDQLQVFINPEITWSSDTLQSYEEGCLSIPGIYDKVERPDAVTVTALGLDGKPFTLEADG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LLA C+QHE+DHLNG LF  HLSRLK++ I +K+ K+ + R
Sbjct: 127 LLAVCIQHEIDHLNGKLFTQHLSRLKQNRIRQKVLKMERER 167


>gi|107024058|ref|YP_622385.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116691145|ref|YP_836768.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|206558867|ref|YP_002229627.1| peptide deformylase [Burkholderia cenocepacia J2315]
 gi|105894247|gb|ABF77412.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116649234|gb|ABK09875.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|198034904|emb|CAR50776.1| peptide deformylase [Burkholderia cenocepacia J2315]
          Length = 167

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 102/158 (64%), Gaps = 4/158 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEE-- 66

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN +  FINP+I+  SD    Y+EGCLS+P    +V+R   + VR ++   +   +  +
Sbjct: 67  -KNELRAFINPEIVWSSDAKQTYEEGCLSVPGIYDEVERPDHVRVRALNEQGETFELDCE 125

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL
Sbjct: 126 GLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKL 163


>gi|88811384|ref|ZP_01126639.1| polypeptide deformylase [Nitrococcus mobilis Nb-231]
 gi|88791273|gb|EAR22385.1| polypeptide deformylase [Nitrococcus mobilis Nb-231]
          Length = 177

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 95/143 (66%), Gaps = 3/143 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP LR  ++P+EK+  ++  L+D++ E MY   GIGLAA Q+ + +R++V+D+ +   
Sbjct: 9   YPDPQLRIRAQPVEKVTDEVRRLVDDLFETMYDAPGIGLAATQVNIHWRVLVVDITEA-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P+ FINP+I+    +  + QEGCLS+P Y   V+R+ ++ V   D + +   +  DG
Sbjct: 67  KNEPLAFINPQILERKGEEEM-QEGCLSVPGYFDTVRRAEWVKVHAQDRSGEPFELETDG 125

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA C+QHE+DHL G LF+D+LS
Sbjct: 126 LLAVCIQHEIDHLEGKLFVDYLS 148


>gi|158337779|ref|YP_001518955.1| peptide deformylase [Acaryochloris marina MBIC11017]
 gi|158308020|gb|ABW29637.1| peptide deformylase [Acaryochloris marina MBIC11017]
          Length = 189

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 3/157 (1%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ + K++ +I  L   ML+ MYS DGIGLAA Q+ V  +L+V+D        
Sbjct: 24  DRVLRQSAKRVSKVDDEIRELARQMLQTMYSADGIGLAAPQVAVGKQLIVVDTDPEEPAN 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ +NPKI   SDD ++ QEGCLSIP    DV+R A I V Y D   + Q+I A  LL
Sbjct: 84  QPIILLNPKIRRHSDDLALGQEGCLSIPGVYLDVRRPAQIEVAYKDEQGRPQVIVATDLL 143

Query: 131 ATCLQHELDHLNGILFIDHLSR---LKRDMITKKMSK 164
           A  +QHE+DHL G++F+D +     L +++  +  SK
Sbjct: 144 ARVIQHEMDHLTGVMFVDRVENSLLLNQELTKQGFSK 180


>gi|40063276|gb|AAR38094.1| polypeptide deformylase [uncultured marine bacterium 578]
          Length = 165

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 94/143 (65%), Gaps = 3/143 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR +++P+  +NSDI   + +M E MY   GIGLAA Q+    R++VID+ +  +
Sbjct: 8   YPDKRLRTIAKPVVSVNSDIKKQVKDMFETMYDAPGIGLAATQVNFHQRIIVIDISEDCN 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P   INP+II  S +   ++EGCLS+PDY  +VKR+  I V  ++ +     I A+ 
Sbjct: 68  Q--PFCLINPEIIEKSGEIE-WEEGCLSVPDYYENVKRANKIKVCALNEHGNTFDIEANE 124

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           +LA C+QHE+DHLNGILF+DHLS
Sbjct: 125 MLAICIQHEMDHLNGILFVDHLS 147


>gi|229526222|ref|ZP_04415626.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
 gi|254286639|ref|ZP_04961594.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|150423223|gb|EDN15169.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|229336380|gb|EEO01398.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
          Length = 168

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 107/165 (64%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP LR  S+ +  + S +  LID++L+ +Y+TD GIGLAA Q+G    +VVIDL 
Sbjct: 6   ILTAPDPRLRVQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D+  R  P+V INPK+++  ++  + QEGCLS+PDY ADV+R   + V  +D   +   I
Sbjct: 65  DN--RDQPLVLINPKVVS-GNNKEMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|187922316|ref|YP_001893958.1| peptide deformylase [Burkholderia phytofirmans PsJN]
 gi|187713510|gb|ACD14734.1| peptide deformylase [Burkholderia phytofirmans PsJN]
          Length = 167

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 100/159 (62%), Gaps = 2/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++ ID+ D   
Sbjct: 9   YPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVITIDVSDD-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +   +  +G
Sbjct: 67  HNELLAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFEMDCEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G +F+++LS LK+  I  KM KL  
Sbjct: 127 LLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLAH 165


>gi|329913547|ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545311|gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
          Length = 177

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +++RP+   +  +  L+ +M E MY   G+GLA+ Q+ V  +L+++D+ D+  
Sbjct: 9   YPDPRLHKIARPVTVFDDRLKQLVADMAETMYDAPGVGLASSQVDVHEQLIIVDISDN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +    V INP+I   S +  +Y EGCLS+P     V+R A I VR +D + +     ADG
Sbjct: 67  QSELRVLINPEITWASTEMQLYDEGCLSVPGVYDGVERHARIKVRALDVDGKEFDTTADG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LKR+ I  KM K
Sbjct: 127 LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLK 162


>gi|120599034|ref|YP_963608.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|146292895|ref|YP_001183319.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|120559127|gb|ABM25054.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|145564585|gb|ABP75520.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|319426575|gb|ADV54649.1| peptide deformylase [Shewanella putrefaciens 200]
          Length = 163

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 102/160 (63%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R ++P++ I + +   ID+++E MY TD GIGLAA Q+G    ++VIDL 
Sbjct: 6   ILTIPDERLKRKAQPVKDIEA-VQGFIDDLIETMYHTDDGIGLAATQVGSTDAIIVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R  P+V INP+I+  S +F V +EGCLSIP YRA V R   + V  +D   +   I
Sbjct: 65  DG--RDQPLVLINPEIVEKSGEF-VGEEGCLSIPGYRAKVSRFEKVKVTALDRTGKAIEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K
Sbjct: 122 ETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRK 161


>gi|27367269|ref|NP_762796.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|320159078|ref|YP_004191456.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
 gi|31076649|sp|Q8D5P5|DEF2_VIBVU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|27358838|gb|AAO07786.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|319934390|gb|ADV89253.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
          Length = 168

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 107/165 (64%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP LR  S+ +  + + +  LID++LE +Y TD G+GLAA Q+G    +VVIDL 
Sbjct: 6   ILTAPDPRLRVQSKEVTDVAA-VQTLIDDLLETLYETDNGVGLAAPQVGREEAIVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           ++  R  P+V +NPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D + +   I
Sbjct: 65  EN--RDEPLVLVNPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDRDGKPLRI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K  +LR
Sbjct: 122 ETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166


>gi|83748633|ref|ZP_00945651.1| Peptide deformylase [Ralstonia solanacearum UW551]
 gi|83724677|gb|EAP71837.1| Peptide deformylase [Ralstonia solanacearum UW551]
          Length = 169

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ ID+ +   
Sbjct: 9   YPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +   + ADG
Sbjct: 67  RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELDADG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LK++ I  K+ K
Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 162


>gi|224419234|ref|ZP_03657240.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|253826952|ref|ZP_04869837.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|313142736|ref|ZP_07804929.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|253510358|gb|EES89017.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|313131767|gb|EFR49384.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
          Length = 168

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 105/162 (64%), Gaps = 4/162 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---D 62
           ++ +P+PILR++S+PIE  N  +  L+D+M EVM   +G+G++A+Q+    R ++I   D
Sbjct: 4   VITYPNPILRQISQPIEVFNESLHELLDSMYEVMLQKNGVGISAIQVAKPIRALLICLPD 63

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            + + H+++ +  INP+I+   D   ++ EGCLS+P++  +VKR++ + V Y D     +
Sbjct: 64  EEGNQHKEDLLEIINPQILE-KDGEIIFNEGCLSVPEFYEEVKRASSLKVAYQDRYGNPK 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + A   LA  LQHE+DHLNGILFID LS LKR    K++ +
Sbjct: 123 EMEAKDYLAVALQHEIDHLNGILFIDKLSILKRKKFEKELKQ 164


>gi|304437066|ref|ZP_07397029.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370017|gb|EFM23679.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 160

 Score =  131 bits (329), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 92/145 (63%), Gaps = 4/145 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+L++ + PIE++      L+D+M E MY+ DG+GLAA Q+G   R+VVID+QD     
Sbjct: 15  DPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVVIDVQDE---H 71

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  +NP +IT  +      EGCLS+P    DV+R+  +TV Y D  ++ + + A+GLL
Sbjct: 72  GLLELVNP-VITMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSRRRTLTAEGLL 130

Query: 131 ATCLQHELDHLNGILFIDHLSRLKR 155
           A C+QHE DHL G LFID   RL++
Sbjct: 131 ARCIQHECDHLEGRLFIDIAVRLRK 155


>gi|306440704|pdb|3OCA|A Chain A, Crystal Structure Of Peptide Deformylase From Ehrlichia
           Chaffeensis
 gi|306440705|pdb|3OCA|B Chain B, Crystal Structure Of Peptide Deformylase From Ehrlichia
           Chaffeensis
          Length = 209

 Score =  131 bits (329), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 17/176 (9%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---- 61
           +V  PD  L   S  +EK++  I  L+D+M E M++  G+GLAAVQ+GV  R++V+    
Sbjct: 27  IVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPE 86

Query: 62  DLQDHAHRKN-------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           + +D    +N             P   INPKI+  S +    +EGCLS+P Y   + R  
Sbjct: 87  EFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQ 146

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            I V+Y+D N    II A G LA CLQHE+DHLNG +F+ +LS+ KRD   +K+ K
Sbjct: 147 RIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKK 202


>gi|261856667|ref|YP_003263950.1| peptide deformylase [Halothiobacillus neapolitanus c2]
 gi|261837136|gb|ACX96903.1| peptide deformylase [Halothiobacillus neapolitanus c2]
          Length = 171

 Score =  131 bits (329), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 99/165 (60%), Gaps = 1/165 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +++FPD  LRRV+  +++ ++ +  L + MLE MY   G+GLAA QI V  R+ V D  +
Sbjct: 6   VLLFPDERLRRVAAEVKQFDARVQRLSEQMLETMYDARGVGLAATQIDVHERMFVADCAE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+VFINP I+  S      +EGCLSIP     V R+  + VR  +   +     
Sbjct: 66  DGCAPEPLVFINPVILDRSGSVE-SEEGCLSIPGVTDKVMRAEAVRVRAQNAFGESFERE 124

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           A GLLA C+QHE+DHL+G LFID+LS LKR  I KK+ K ++ ++
Sbjct: 125 AGGLLAICIQHEIDHLDGRLFIDYLSPLKRQRIRKKLEKALRQKE 169


>gi|207727558|ref|YP_002255952.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum MolK2]
 gi|206590795|emb|CAQ56407.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum MolK2]
          Length = 174

 Score =  131 bits (329), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ ID+ +   
Sbjct: 14  YPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDVSES-- 71

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +   + ADG
Sbjct: 72  RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELDADG 131

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LK++ I  K+ K
Sbjct: 132 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 167


>gi|207741949|ref|YP_002258341.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum IPO1609]
 gi|206593335|emb|CAQ60262.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum IPO1609]
          Length = 174

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ ID+ +   
Sbjct: 14  YPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDVSES-- 71

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +   + ADG
Sbjct: 72  RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELDADG 131

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LK++ I  K+ K
Sbjct: 132 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 167


>gi|113474637|ref|YP_720698.1| peptide deformylase [Trichodesmium erythraeum IMS101]
 gi|110165685|gb|ABG50225.1| peptide deformylase [Trichodesmium erythraeum IMS101]
          Length = 187

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 95/149 (63%), Gaps = 2/149 (1%)

Query: 5   PLVIF--PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL I+   D  LR+ ++ + K++SD+  L+  ML+ MY+ DGIGLAA Q+ V  +++VID
Sbjct: 16  PLEIYYLGDRSLRQSAKRVAKVDSDMRKLVREMLQTMYTADGIGLAAPQVNVQKQVIVID 75

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            +       P+V INP I  +S+D  ++QEGCLSIP    DV+R + I V Y D N + Q
Sbjct: 76  CEPTNSATPPLVLINPTIKKYSNDICLFQEGCLSIPGVYLDVQRPSEIEVAYKDENGRPQ 135

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            + A  LL+  +QHE+DHL GILF+D + 
Sbjct: 136 TLQAQELLSRAIQHEMDHLQGILFVDRVE 164


>gi|269102516|ref|ZP_06155213.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162414|gb|EEZ40910.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 171

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 100/157 (63%), Gaps = 5/157 (3%)

Query: 10  PDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67
           P+P LR  +  +  + ++ I  L+D+ML+ MY T +GIGLAA Q+G    ++VIDL +  
Sbjct: 10  PNPKLRVQAEDVVDVKAEHIQTLVDDMLQTMYETGNGIGLAAPQVGRKEAIIVIDLSEE- 68

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R  P VFINPKI+   ++  V QEGCLS+PDY ADV+R   I +  +D +     +  D
Sbjct: 69  -RNEPQVFINPKIVR-GENPVVGQEGCLSVPDYYADVERFEKIAITALDRDGNEINMERD 126

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             LA  LQHE+DHL GILFID+LS LKR M  KK+ K
Sbjct: 127 DFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKK 163


>gi|39995240|ref|NP_951191.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
 gi|39982002|gb|AAR33464.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
          Length = 182

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 1/164 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +PDP+L++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VID+
Sbjct: 18  RTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVIDV 77

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                R   +V INP +I   +  S  +EGCLS+P Y A+V R   + V+ ++   +  +
Sbjct: 78  SQRDERPELIVCINP-VIIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEEVV 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             A+GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  ++ +
Sbjct: 137 HRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTE 180


>gi|284040267|ref|YP_003390197.1| peptide deformylase [Spirosoma linguale DSM 74]
 gi|283819560|gb|ADB41398.1| peptide deformylase [Spirosoma linguale DSM 74]
          Length = 190

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 100/176 (56%), Gaps = 11/176 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ + DP+LR+ ++ IE  + D+  L  NM E MY+  GIGLAA QIG   R+ V+D +
Sbjct: 4   PIIAYGDPVLRKRAKDIEPGSLDVKTLSQNMFETMYAASGIGLAAPQIGQSVRMFVVDGE 63

Query: 65  -----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                      D +      VFINP+II  + D   ++EGCLSIP  R +V R   I +R
Sbjct: 64  PLNEDEPEEDIDQSLVGFKKVFINPEIIEEAGDDWGFEEGCLSIPGIRGEVFRPEIIVIR 123

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Y D +        DG+ A  +QHE DHL+G LF D+L  L+R +I KK+S + + +
Sbjct: 124 YFDVDWNEHEEEYDGMAARIIQHEYDHLDGKLFTDYLPSLRRTLIKKKLSDISKGK 179


>gi|220931832|ref|YP_002508740.1| peptide deformylase [Halothermothrix orenii H 168]
 gi|254767591|sp|B8CWS6|DEF_HALOH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219993142|gb|ACL69745.1| peptide deformylase [Halothermothrix orenii H 168]
          Length = 154

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 96/148 (64%), Gaps = 4/148 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR  ++P+ +I    ++LIDNM+E MY  +G+GLAA Q+GV  R++V+D  +    +
Sbjct: 11  DPVLRSKAKPVTEITKKTLSLIDNMVETMYQAEGVGLAAPQVGVSKRIIVVDTGEG---Q 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+II  ++   + +EGCLS+P     V R++ +TV+ ++   +   I A+G L
Sbjct: 68  GLIELINPEIIE-TEGKDIMEEGCLSVPGQTGKVIRASKVTVKGLNRGGKEVRIRAEGFL 126

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMI 158
           A   QHE+DHLNGILFID + R+  +MI
Sbjct: 127 ARAFQHEIDHLNGILFIDKVVRIGEEMI 154


>gi|332885374|gb|EGK05623.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836]
          Length = 187

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 104/171 (60%), Gaps = 7/171 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+V   I K   ++  LIDNM E MY+ DGIGLAA QIG+  RL VIDL+
Sbjct: 4   PIYLYGHPVLRKVGEDITKDYPNLGTLIDNMFETMYNADGIGLAAPQIGLAIRLFVIDLE 63

Query: 65  DHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN- 118
             A  +        VFINP+I+  S +    +EGCLSIP     V+R   I ++Y+D N 
Sbjct: 64  PLAEDEPKYAGFKKVFINPRIVEESGEPVKLEEGCLSIPGINEMVERKERIRIQYLDENF 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             H  +Y D   A C+QHE DH+ G+LF+D +S +++ +I  K++ L++ R
Sbjct: 124 VAHDEVYED-FFARCIQHEYDHIEGVLFVDLISGIRKQLIKSKLNNLLKGR 173


>gi|68171578|ref|ZP_00544952.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658603|ref|YP_506903.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas]
 gi|67999004|gb|EAM85681.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88600060|gb|ABD45529.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas]
          Length = 188

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 17/176 (9%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---- 61
           +V  PD  L   S  +EK++  I  L+D+M E M++  G+GLAAVQ+GV  R++V+    
Sbjct: 6   IVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPE 65

Query: 62  DLQDHAHRKN-------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           + +D    +N             P   INPKI+  S +    +EGCLS+P Y   + R  
Sbjct: 66  EFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQ 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            I V+Y+D N    II A G LA CLQHE+DHLNG +F+ +LS+ KRD   +K+ K
Sbjct: 126 RIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKK 181


>gi|323496228|ref|ZP_08101286.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
 gi|323318505|gb|EGA71458.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
          Length = 167

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 106/165 (64%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP L+  +  +E  +S I  LID+ML+ +Y TD GIGLA+ Q+G    +V+IDL 
Sbjct: 6   ILTAPDPKLKTQAHKVEDFSS-IQTLIDDMLDTLYDTDNGIGLASTQVGRSEAVVIIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D+  R  P++ +NP++++ S   ++ QEGCLS+PDY A+V+R   + V   D +     I
Sbjct: 65  DN--RDEPLILVNPEVVSGSHK-ALGQEGCLSVPDYYAEVERYTSVVVSAQDRHGNSITI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +D  LA  +QHE+DHL G LFID+LS LKR M  KK+ K ++ R
Sbjct: 122 ESDDFLAIVMQHEIDHLAGNLFIDYLSPLKRQMAMKKVKKHLKSR 166


>gi|17230571|ref|NP_487119.1| peptide deformylase [Nostoc sp. PCC 7120]
 gi|23396564|sp|Q8YSK6|DEF1_ANASP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|17132173|dbj|BAB74778.1| polypeptide deformylase [Nostoc sp. PCC 7120]
          Length = 187

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 89/140 (63%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I K++ +   LI +ML+ MYS+DGIGLAA Q+G+  +L+VID +      
Sbjct: 24  DRVLRQPAKRITKVDDETRQLIRDMLQTMYSSDGIGLAAPQVGINKQLIVIDCEPDNPAN 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP I   S +    QEGCLSIP    DVKR   + V Y D N + Q + A  LL
Sbjct: 84  PPLILINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLL 143

Query: 131 ATCLQHELDHLNGILFIDHL 150
             C+QHE+DHLNG++F+D +
Sbjct: 144 GRCIQHEMDHLNGVVFVDRV 163


>gi|189485012|ref|YP_001955953.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|238058216|sp|B1GZ10|DEF_UNCTG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|170286971|dbj|BAG13492.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 168

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 94/158 (59%), Gaps = 3/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +  + DP LR+ +  + +IN  I  L  +MLE MYS  G+GLAA Q+G+L R  V
Sbjct: 1   MAKLKIKKYGDPALRKRAEAVSEINEIIKELASDMLETMYSASGVGLAAPQVGILLRFCV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+    ++K+P+V INP+II+  +  +  +EGCLS P +  +V R   I   Y D N  
Sbjct: 61  IDVD--PNKKSPIVMINPEIISGENKITA-EEGCLSFPGFYGNVNRFENIIAGYTDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Q I A   LA  LQHE+DHL+  LFID+L   KR+ I
Sbjct: 118 RQEIKAQNFLAKALQHEIDHLDAKLFIDYLPDWKRESI 155


>gi|257063703|ref|YP_003143375.1| peptide deformylase [Slackia heliotrinireducens DSM 20476]
 gi|256791356|gb|ACV22026.1| peptide deformylase [Slackia heliotrinireducens DSM 20476]
          Length = 180

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 83/144 (57%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +PDP LR V  P +  +  +  L   M   MY+ +G GLAA Q+GV  R++VID  
Sbjct: 7   PVVTYPDPTLREVCVPCDPSDKSLKKLARQMANTMYANNGCGLAAPQVGVNKRIIVIDCD 66

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +  +NP+  +NP+II       +  EGCLS P    +++R  +  V+Y D N +  II
Sbjct: 67  QDSGTRNPITLLNPEIIETRGPEELDGEGCLSCPGITVEIRRPTYAIVKYTDLNGEDWII 126

Query: 125 YADGLLATCLQHELDHLNGILFID 148
             DGLL  CLQHE+DHLNGI   +
Sbjct: 127 EGDGLLGRCLQHEIDHLNGITLFE 150


>gi|187930742|ref|YP_001901229.1| peptide deformylase [Ralstonia pickettii 12J]
 gi|187727632|gb|ACD28797.1| peptide deformylase [Ralstonia pickettii 12J]
          Length = 171

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++ ID+ +   
Sbjct: 9   YPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVITIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+  SD+  V+ EGCLS+PD    V R A + VR ++       + AD 
Sbjct: 67  RDELRVFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGDTFELEADD 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LK+  I  K+ K
Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKK 162


>gi|242277625|ref|YP_002989754.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
 gi|242120519|gb|ACS78215.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
          Length = 170

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 95/162 (58%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P+  L+ V   +E++  ++  +IDNM+E MY  DG+GLAA Q+GV  RL+VID   
Sbjct: 5   ILAYPEESLKEVCSRVEEVTPELKEIIDNMIETMYEDDGVGLAAPQVGVQKRLIVIDPSG 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R +  V INP+I+  S      +E CLS P ++  +KR   +TV   D       I 
Sbjct: 65  PKERTDLQVIINPEIVEKSSQKVDSEEACLSCPGFKCVIKRHETVTVTGTDPEGNDVRIE 124

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           AD  LA  LQHE+DHL+G L +D + RLKR M  KK+ K ++
Sbjct: 125 ADDFLAIVLQHEIDHLDGTLIVDRVGRLKRAMYDKKVKKWLK 166


>gi|126174517|ref|YP_001050666.1| peptide deformylase [Shewanella baltica OS155]
 gi|153000548|ref|YP_001366229.1| peptide deformylase [Shewanella baltica OS185]
 gi|160875185|ref|YP_001554501.1| peptide deformylase [Shewanella baltica OS195]
 gi|217973486|ref|YP_002358237.1| peptide deformylase [Shewanella baltica OS223]
 gi|304408620|ref|ZP_07390241.1| peptide deformylase [Shewanella baltica OS183]
 gi|307305448|ref|ZP_07585196.1| peptide deformylase [Shewanella baltica BA175]
 gi|125997722|gb|ABN61797.1| peptide deformylase [Shewanella baltica OS155]
 gi|151365166|gb|ABS08166.1| peptide deformylase [Shewanella baltica OS185]
 gi|160860707|gb|ABX49241.1| peptide deformylase [Shewanella baltica OS195]
 gi|217498621|gb|ACK46814.1| peptide deformylase [Shewanella baltica OS223]
 gi|304352441|gb|EFM16838.1| peptide deformylase [Shewanella baltica OS183]
 gi|306911751|gb|EFN42176.1| peptide deformylase [Shewanella baltica BA175]
 gi|315267381|gb|ADT94234.1| peptide deformylase [Shewanella baltica OS678]
          Length = 163

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 101/160 (63%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R ++P++ I + +   ID+++E MY TD GIGLAA Q+G    ++VIDL 
Sbjct: 6   ILTIPDERLKRKAQPVKDIEA-VQGFIDDLIETMYHTDDGIGLAATQVGSTDAIIVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R  P V INP+I+  S +F V +EGCLSIP YRA V R   + V  +D   +   I
Sbjct: 65  DG--RDQPQVLINPEIVEKSGEF-VGEEGCLSIPGYRAKVSRFEKVKVTALDRTGKAIEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K
Sbjct: 122 ETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRK 161


>gi|298504245|gb|ADI82968.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens
           KN400]
          Length = 167

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 1/164 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +PDP+L++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VID+
Sbjct: 3   RTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVIDV 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                R   +V INP +I   +  S  +EGCLS+P Y A+V R   + V+ ++   +  +
Sbjct: 63  SQRDERPELIVCINP-VIIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEEVV 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             A+GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  ++ +
Sbjct: 122 HRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTE 165


>gi|322421893|ref|YP_004201116.1| peptide deformylase [Geobacter sp. M18]
 gi|320128280|gb|ADW15840.1| peptide deformylase [Geobacter sp. M18]
          Length = 168

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 110/169 (65%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  KP+V +PDPIL++V  P++ I+ +I  L++++++ M++  G +G+AA Q+GV  R+ 
Sbjct: 1   MAVKPIVTYPDPILKQVCPPVQAIDVEIRQLVEDLVDTMHAGPGSVGVAAPQVGVARRVC 60

Query: 60  VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           VID+  + H K      ++ INP+I+  S   +V +EGC+S+PDY  DV+R+  +T+R+ 
Sbjct: 61  VIDVSKNRHGKENNHGLLLMINPEILAKSG-AAVMREGCMSVPDYTGDVERATELTLRFT 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +   +   A G  A  +QHE+DHL+G+LF+D ++ LK  +  +K  K
Sbjct: 120 EPDGGVREFEASGFEAVAIQHEMDHLDGLLFLDRIASLKTGLFRRKSYK 168


>gi|268316440|ref|YP_003290159.1| peptide deformylase [Rhodothermus marinus DSM 4252]
 gi|262333974|gb|ACY47771.1| peptide deformylase [Rhodothermus marinus DSM 4252]
          Length = 189

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 9/156 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++ DPILR  ++P+   + ++  L+D+M+E M++  GIGLAA Q+G   R+ V+DL 
Sbjct: 4   PIHVYGDPILRERAQPVAADSPELQQLLDDMVETMHAASGIGLAAPQVGRRERVFVVDLT 63

Query: 64  --------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                   +       PM FINP+I+  S++   ++EGCLSIPD R  V+R   + +RY+
Sbjct: 64  PMKEELEAEGETLPPMPMFFINPEIVWTSEEQCSFEEGCLSIPDVREVVERPVAVRIRYL 123

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           D   + Q + A G+LA  +QHE DHL GILFID +S
Sbjct: 124 DRQFRPQELEARGMLARVIQHEYDHLEGILFIDRIS 159


>gi|297588336|ref|ZP_06946979.1| peptide deformylase [Finegoldia magna ATCC 53516]
 gi|297573709|gb|EFH92430.1| peptide deformylase [Finegoldia magna ATCC 53516]
          Length = 162

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 92/150 (61%), Gaps = 3/150 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR+ SR ++KI+  I  ++D+M E MY   GIGLA VQ+G+L R+VVID+QD   + 
Sbjct: 11  DPILRKKSREVKKIDDRIKQIVDDMFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK- 69

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             MV INPKI+  SD+  +  EGCLS+P     V+R   +TV Y D +   Q   A    
Sbjct: 70  --MVLINPKIVERSDEKQINVEGCLSVPGKNGYVERPKTVTVEYTDLDGNIQRKTATDYK 127

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           A C  HELDHL+G+L+ D +  L  + + +
Sbjct: 128 AHCFCHELDHLDGVLYTDKVLNLSDEEVER 157


>gi|22299219|ref|NP_682466.1| peptide deformylase [Thermosynechococcus elongatus BP-1]
 gi|39930888|sp|Q8DIB4|DEF_THEEB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22295401|dbj|BAC09228.1| polypeptide deformylase [Thermosynechococcus elongatus BP-1]
          Length = 188

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 91/141 (64%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ + K++  I ++   ML+ MYS DGIGLAA Q+G+  +++VID+       
Sbjct: 24  DRVLRQPAKRVSKVDDSIRDIARKMLQTMYSADGIGLAAPQVGINKQILVIDIHPDDPEA 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP I  FS++  V QEGCLSIP    +V+R A + V Y D   + Q+I A GLL
Sbjct: 84  EPLVMINPVIKDFSEELEVCQEGCLSIPGVYLEVRRPAMVEVSYKDEWGRPQVIMAGGLL 143

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  +QHE+DHL G++F+D + 
Sbjct: 144 ARAIQHEIDHLTGVMFVDRVE 164


>gi|254229199|ref|ZP_04922618.1| peptide deformylase [Vibrio sp. Ex25]
 gi|262395549|ref|YP_003287402.1| peptide deformylase [Vibrio sp. Ex25]
 gi|151938284|gb|EDN57123.1| peptide deformylase [Vibrio sp. Ex25]
 gi|262339143|gb|ACY52937.1| peptide deformylase [Vibrio sp. Ex25]
          Length = 168

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 107/162 (66%), Gaps = 5/162 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67
            PDP L+  +  +  + S +  LID+MLE +Y+T +GIGLA+ Q+G    +VVID+ D  
Sbjct: 9   IPDPRLKVKAEKVTDV-STVQTLIDDMLETLYATGNGIGLASTQVGRKEAVVVIDISDE- 66

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R +P++ +NP++++  ++ ++ QEGCLS+P+Y ADV+R   + V  +D +     I +D
Sbjct: 67  -RNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDGNPMTIESD 124

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 125 EFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166


>gi|46581767|ref|YP_012575.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601080|ref|YP_965480.1| peptide deformylase [Desulfovibrio vulgaris DP4]
 gi|46451190|gb|AAS97835.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561309|gb|ABM27053.1| peptide deformylase [Desulfovibrio vulgaris DP4]
 gi|311232326|gb|ADP85180.1| peptide deformylase [Desulfovibrio vulgaris RCH1]
          Length = 171

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 87/140 (62%)

Query: 30  NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV 89
            L  +M+E MY  DGIGLAA Q+G   RL+V+D+     R++ M FINP++    D+   
Sbjct: 29  QLAADMVETMYREDGIGLAAPQVGANCRLIVVDVSGPEKRESLMTFINPRLEPLGDEKVE 88

Query: 90  YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            +EGCLS+P  RA V+R   + +   D +     + ADGLLA CLQHE+DHL G LFID 
Sbjct: 89  SEEGCLSVPALRAKVERHERVRLTARDLDGNEVCMDADGLLAICLQHEIDHLGGTLFIDR 148

Query: 150 LSRLKRDMITKKMSKLVQLR 169
           +SRLKR +   K+ K ++ R
Sbjct: 149 ISRLKRSLYDAKVKKWLKAR 168


>gi|75907053|ref|YP_321349.1| peptide deformylase [Anabaena variabilis ATCC 29413]
 gi|75700778|gb|ABA20454.1| peptide deformylase [Anabaena variabilis ATCC 29413]
          Length = 187

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 88/140 (62%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I K++ +   LI +ML+ MYS DGIGLAA Q+G+  +L+VID +      
Sbjct: 24  DRVLRQPAKRITKVDDETRQLIRDMLQTMYSNDGIGLAAPQVGINKQLIVIDCEPDNPAN 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP I   S +    QEGCLSIP    DVKR   + V Y D N + Q + A  LL
Sbjct: 84  PPLVLINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLL 143

Query: 131 ATCLQHELDHLNGILFIDHL 150
             C+QHE+DHLNG++F+D +
Sbjct: 144 GRCIQHEMDHLNGVVFVDRV 163


>gi|299068355|emb|CBJ39579.1| peptide deformylase [Ralstonia solanacearum CMR15]
          Length = 169

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ ID+ +   
Sbjct: 9   YPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDISES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+  SD   V+ EGCLS+PD    V+R   + VR ++   +   +  DG
Sbjct: 67  RDELRVFINPEIVWASDARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELETDG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LK++ I  K+ K
Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 162


>gi|217968557|ref|YP_002353791.1| peptide deformylase [Thauera sp. MZ1T]
 gi|217505884|gb|ACK52895.1| peptide deformylase [Thauera sp. MZ1T]
          Length = 167

 Score =  130 bits (327), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 3/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L  V+ P+ +++ +I  LI +M E MY   GIGLAA Q+ V  R+VVID+ 
Sbjct: 5   PILRYPDPRLHTVAAPVGRVDDEIRRLIADMAETMYEAPGIGLAATQVDVHKRIVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +   M  INP+I+  S +  V +EGCLS+P     V R+  + VR ++   +    
Sbjct: 65  ED--KSGLMALINPEILERSGE-QVCEEGCLSVPGIYEKVSRAERVKVRALNEKGESFEF 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHE+DHL+G +F+++LS+LK   I  K++K
Sbjct: 122 EADGLLAVCVQHEIDHLDGKVFVEYLSQLKLGRIKSKLAK 161


>gi|15894999|ref|NP_348348.1| peptide deformylase [Clostridium acetobutylicum ATCC 824]
 gi|3023622|sp|O05100|DEF1_CLOAB RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|15024688|gb|AAK79688.1|AE007681_9 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC
           824]
 gi|1905954|gb|AAB50347.1| deformylase [Clostridium acetobutylicum ATCC 824]
 gi|325509136|gb|ADZ20772.1| peptide deformylase [Clostridium acetobutylicum EA 2018]
          Length = 150

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 96/144 (66%), Gaps = 6/144 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+ SR +EKI+  ++ LID+M E MY+ DG+GLAA Q+G+L RLVVID+ +   
Sbjct: 9   YGDELLRKKSRKVEKIDKRLLTLIDDMFETMYNADGVGLAAPQVGILKRLVVIDVGE--- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+V INP+I+  S   +V  EGCLSIP+ + +V+R  ++  + ++   +  +I A+ 
Sbjct: 66  --GPVVLINPEILETSGK-AVDVEGCLSIPERQGEVERPTYVKAKALNEKGEEIVIEAED 122

Query: 129 LLATCLQHELDHLNGILFIDHLSR 152
           L A  + HE DHLNG+LF+D L+ 
Sbjct: 123 LFARAICHETDHLNGVLFVDKLAE 146


>gi|261409931|ref|YP_003246172.1| peptide deformylase [Paenibacillus sp. Y412MC10]
 gi|261286394|gb|ACX68365.1| peptide deformylase [Paenibacillus sp. Y412MC10]
          Length = 172

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 100/151 (66%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG  GLAA QIG+L RL+
Sbjct: 1   MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  +       +  INP+I+   D   +  E CLS P Y   VKR+  +TV+ ++   
Sbjct: 61  VMDCGEGL-----IELINPEIVEM-DGEQMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Q  I+  +  LA C+QHE+DHLNGILF+DH+
Sbjct: 115 QTVILKGEDYLARCMQHEIDHLNGILFVDHV 145


>gi|313144549|ref|ZP_07806742.1| peptide deformylase [Helicobacter cinaedi CCUG 18818]
 gi|313129580|gb|EFR47197.1| peptide deformylase [Helicobacter cinaedi CCUG 18818]
          Length = 179

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 97/151 (64%), Gaps = 5/151 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----Q 64
           +P+PILR+ S  +E  +  +  L+D+M E M  + G+GLAA+Q+G+  R++VI+L     
Sbjct: 15  YPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVINLPRDED 74

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              ++++ +  INP  +T  DD   ++EGCLS+P++   VKR   ++V Y D     +I+
Sbjct: 75  KQQYKEDLLEVINPTFLTQEDDIE-WEEGCLSVPEFYESVKRFNKVSVAYKDRFGNDKIL 133

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            A+G LA  LQHE+DHLNGILF+D L  L+R
Sbjct: 134 QAEGFLAVALQHEIDHLNGILFVDKLPILRR 164


>gi|295675125|ref|YP_003603649.1| peptide deformylase [Burkholderia sp. CCGE1002]
 gi|295434968|gb|ADG14138.1| peptide deformylase [Burkholderia sp. CCGE1002]
          Length = 167

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 101/159 (63%), Gaps = 2/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               + FINP+I+  SD   + +EGCLS+P    +V+R+  + VR ++   +   +  +G
Sbjct: 67  HDELLAFINPEIVWSSDQRKLSEEGCLSVPGIYDNVERAEKVRVRALNQKGETFELDCEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G +F+++LS LK+  I  KM KL  
Sbjct: 127 LLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLAH 165


>gi|153836422|ref|ZP_01989089.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
 gi|149750324|gb|EDM61069.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
          Length = 168

 Score =  130 bits (327), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 107/162 (66%), Gaps = 5/162 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67
            PDP L+  +  +  + S I  LID+MLE +Y+T +GIGLA+ Q+G    +VVID+ D  
Sbjct: 9   IPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVVVIDISDE- 66

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R +P++ +NP++++  ++ ++ QEGCLS+P+Y ADV+R   + V  +D +     I +D
Sbjct: 67  -RNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDGSPITIESD 124

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 125 EFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166


>gi|33860628|ref|NP_892189.1| peptide deformylase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|39930841|sp|Q7V3K7|DEF_PROMP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33633570|emb|CAE18527.1| putative formylmethionine deformylase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 201

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 92/141 (65%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR  ++ I K+++ I NL  +ML+ MY+  GIGLAA QIG+   L+VID+       
Sbjct: 38  DDVLRENAKRISKVDNSIRNLAKDMLQSMYAAKGIGLAAPQIGIKKELLVIDVNFEDAAA 97

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+I  +    + Y+EGCLSIP    +V R + I +R+ D   + + + ADGLL
Sbjct: 98  EPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLRFRDEMGRPRKMKADGLL 157

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A C+QHE+DHLNG+LF+D ++
Sbjct: 158 ARCIQHEMDHLNGVLFVDRVT 178


>gi|224438109|ref|ZP_03659044.1| peptide deformylase [Helicobacter cinaedi CCUG 18818]
          Length = 175

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 97/151 (64%), Gaps = 5/151 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----Q 64
           +P+PILR+ S  +E  +  +  L+D+M E M  + G+GLAA+Q+G+  R++VI+L     
Sbjct: 11  YPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVINLPRDED 70

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              ++++ +  INP  +T  DD   ++EGCLS+P++   VKR   ++V Y D     +I+
Sbjct: 71  KQQYKEDLLEVINPTFLTQEDDIE-WEEGCLSVPEFYESVKRFNKVSVAYKDRFGNDKIL 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            A+G LA  LQHE+DHLNGILF+D L  L+R
Sbjct: 130 QAEGFLAVALQHEIDHLNGILFVDKLPILRR 160


>gi|28900639|ref|NP_800294.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365515|ref|ZP_05778052.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|260877578|ref|ZP_05889933.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|260895409|ref|ZP_05903905.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|260901682|ref|ZP_05910077.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|31076642|sp|Q87I22|DEF2_VIBPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|28809019|dbj|BAC62127.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085281|gb|EFO34976.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|308090907|gb|EFO40602.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|308108907|gb|EFO46447.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|308114324|gb|EFO51864.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|328470579|gb|EGF41490.1| peptide deformylase [Vibrio parahaemolyticus 10329]
          Length = 168

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 107/162 (66%), Gaps = 5/162 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67
            PDP L+  +  +  + S I  LID+MLE +Y+T +GIGLA+ Q+G    +VVID+ D  
Sbjct: 9   IPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVVVIDISDE- 66

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R +P++ +NP++++  ++ ++ QEGCLS+P+Y ADV+R   + V  +D +     I +D
Sbjct: 67  -RNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDGNPITIESD 124

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 125 EFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166


>gi|253997550|ref|YP_003049614.1| peptide deformylase [Methylotenera mobilis JLW8]
 gi|253984229|gb|ACT49087.1| peptide deformylase [Methylotenera mobilis JLW8]
          Length = 166

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L  V++P++++N+ +  LID+M E MY+  GIGLAA Q+    +L+++D  +   
Sbjct: 9   YPDPRLHTVAKPVKEVNAAVHRLIDDMAETMYAAPGIGLAATQVDQHVQLLLVDTSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +    VFINPKI+   D   VY+EGCLS+P     V R+  I V  +  + +   + A G
Sbjct: 67  KDQLQVFINPKILE-RDGEQVYEEGCLSVPGVYESVTRAEKILVEALGKDGKRFTLEAHG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LL+ C+QHE+DHL G +F+++LS LKR+ I  KM K
Sbjct: 126 LLSVCIQHEMDHLQGKVFVEYLSPLKRNRIKNKMLK 161


>gi|91205496|ref|YP_537851.1| polypeptide deformylase [Rickettsia bellii RML369-C]
 gi|157827211|ref|YP_001496275.1| polypeptide deformylase [Rickettsia bellii OSU 85-389]
 gi|91069040|gb|ABE04762.1| Polypeptide deformylase [Rickettsia bellii RML369-C]
 gi|157802515|gb|ABV79238.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389]
          Length = 183

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 101/163 (61%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++    IE ++ +I  +ID ML  M     +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQGELIEVVDDNIRTIIDKMLNTMQIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P++FINP+I  FS D   + E  LS P   A + RS  I + Y+D +   Q + 
Sbjct: 70  N-NKSSPIIFINPEITYFSSDKQTFMERSLSFPGIEAPITRSKAIKINYLDYHGNKQELE 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A   LAT +QHE+D+LNG +F+DHLS+LKRD + KKM K +++
Sbjct: 129 AQDFLATVIQHEVDYLNGKVFLDHLSKLKRDTLLKKMLKYIKM 171


>gi|256827225|ref|YP_003151184.1| peptide deformylase [Cryptobacterium curtum DSM 15641]
 gi|256583368|gb|ACU94502.1| peptide deformylase [Cryptobacterium curtum DSM 15641]
          Length = 175

 Score =  130 bits (326), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 85/150 (56%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V+ PDPILR+ +   +  +  + +L   M E MY  +G GLAA Q+GVL RL+VID   
Sbjct: 3   IVLSPDPILRQRAEEADIADESLKSLAQQMAETMYENNGCGLAAPQVGVLKRLIVIDCDT 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            +  +NP+  INP I+  + ++    EGCLS+P     ++R AF  V Y D +     I 
Sbjct: 63  ESEERNPITLINPVILETAGEWETEGEGCLSVPGITVPIRRRAFARVEYRDLDGNVCTIE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            DGLL  CLQHE+DHLNG    +    + R
Sbjct: 123 GDGLLGRCLQHEIDHLNGKTLFESCDPITR 152


>gi|284047692|ref|YP_003398031.1| peptide deformylase [Acidaminococcus fermentans DSM 20731]
 gi|283951913|gb|ADB46716.1| peptide deformylase [Acidaminococcus fermentans DSM 20731]
          Length = 158

 Score =  130 bits (326), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 88/137 (64%), Gaps = 4/137 (2%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           PILR  + P+ + +  +  L+ +M E MY+ +G GLAA QIG+  RLVVID  D A  + 
Sbjct: 12  PILREKAVPVTRFDKKLARLLKDMAETMYAANGCGLAAPQIGLSKRLVVIDAGDGAGIRE 71

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
              F+NP ++T  +  +V  EGCLS+PDY  +VKR+A ITV + D    H  + ADGLLA
Sbjct: 72  ---FVNP-VLTDPEGEAVDSEGCLSVPDYEGEVKRAARITVHFQDRKGDHYRLTADGLLA 127

Query: 132 TCLQHELDHLNGILFID 148
             LQHE DHL G+LFID
Sbjct: 128 RALQHECDHLEGVLFID 144


>gi|332830442|gb|EGK03070.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286]
          Length = 187

 Score =  130 bits (326), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 104/172 (60%), Gaps = 9/172 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++   +LR+ SR I     ++  LI+NM E MY+ DGIGLAA QIG+  RL VIDL+
Sbjct: 4   PIYLYGHSVLRKKSREISSDYPNLKELIENMFETMYNADGIGLAAPQIGLDIRLFVIDLE 63

Query: 65  DHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
             A   NP+      VFINP II  + +    +EGCLSIP     V R+  I ++Y+D N
Sbjct: 64  PLA-EDNPIYSGFKKVFINPVIIEETGEVVKMEEGCLSIPGINEGVDRNEKIRIQYLDEN 122

Query: 119 -AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              H  +Y D   A C+QHE DH+ GILFID +S +++ +I  K++ L++ R
Sbjct: 123 FVSHDEVY-DAFFARCIQHEYDHIEGILFIDKISGIRKQLIKSKLNNLIKGR 173


>gi|227821802|ref|YP_002825772.1| peptide deformylase [Sinorhizobium fredii NGR234]
 gi|227340801|gb|ACP25019.1| peptide deformylase-like protein [Sinorhizobium fredii NGR234]
          Length = 163

 Score =  129 bits (325), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 99/165 (60%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP+P L   +  + + +S + +L+D++ + M +  GIG+ A  IGVL R+ V
Sbjct: 1   MALRPIIRFPNPALGMSAEMVTRFDSSLRSLVDDLTDTMRAAPGIGITAPHIGVLQRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+L+  A    P  F+NP++I  S++   + EG +S+P    +V+R   I VRY   + +
Sbjct: 61  IELERQA---GPRTFVNPQMIWCSEETERHSEGSVSMPGISEEVERPTSIRVRYQTISGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                A GL+A CLQHE+D L+GI +I  LSRLKR+   K+  KL
Sbjct: 118 TLEEEASGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAVKRFEKL 162


>gi|83816785|ref|YP_445415.1| peptide deformylase [Salinibacter ruber DSM 13855]
 gi|294507298|ref|YP_003571356.1| peptide deformylase [Salinibacter ruber M8]
 gi|123739741|sp|Q2S316|DEF_SALRD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|83758179|gb|ABC46292.1| peptide deformylase [Salinibacter ruber DSM 13855]
 gi|294343626|emb|CBH24404.1| Peptide deformylase [Salinibacter ruber M8]
          Length = 195

 Score =  129 bits (325), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 93/156 (59%), Gaps = 9/156 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++    LR  + P+++    +  LIDNM+E M++  GIGLAA Q+G   RL V+DL 
Sbjct: 4   PIYVYGHEALRNETDPVQENTEALQELIDNMIETMHNAAGIGLAAPQVGRTERLFVVDLT 63

Query: 65  DHAHR---------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             A             PMVFINP+I+  S+D +  +EGCLSIP+ R  V R   I +RY 
Sbjct: 64  PMADEIAEAGEPLPPQPMVFINPEIVEESEDTAEMEEGCLSIPEVREAVARPERIRMRYR 123

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           D   + Q + A G+L+  LQHE DHL+G+LF D+LS
Sbjct: 124 DREFEEQELEAGGMLSRVLQHERDHLDGVLFTDYLS 159


>gi|88807213|ref|ZP_01122725.1| peptide deformylase [Synechococcus sp. WH 7805]
 gi|88788427|gb|EAR19582.1| peptide deformylase [Synechococcus sp. WH 7805]
          Length = 183

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 95/156 (60%), Gaps = 7/156 (4%)

Query: 3   KKPLVIFP-------DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           K+PL   P       D +LR  +R I K++  + +L  +ML  MY+  GIGLAA Q+GV 
Sbjct: 5   KEPLETAPLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVH 64

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            +L+VIDL        P+V INP+II+ S     Y+EGCLSIP    DV R + + V + 
Sbjct: 65  QQLLVIDLDPETASSPPLVLINPEIISASASLDTYEEGCLSIPGVYLDVVRPSAVQVSFR 124

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           D   + + + ADGL+A C+QHE+DHL G+LF+D ++
Sbjct: 125 DEMGRPKTLKADGLMARCIQHEMDHLTGVLFVDRVT 160


>gi|89074343|ref|ZP_01160825.1| peptide deformylase [Photobacterium sp. SKA34]
 gi|89049830|gb|EAR55371.1| peptide deformylase [Photobacterium sp. SKA34]
          Length = 170

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 102/162 (62%), Gaps = 5/162 (3%)

Query: 10  PDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67
           P+P LR  +  +  + ++ I  LID+ML  MY T +GIGLAA Q+G    ++VIDL +  
Sbjct: 10  PNPKLRVQAEDVADVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESIIVIDLSEE- 68

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R  P VF+NPKI+   ++  V QEGCLS+PDY ADV+R   I +  +D +     +  D
Sbjct: 69  -RNEPHVFVNPKIVR-GENPVVGQEGCLSVPDYYADVERFEKIELTALDRDGNDIHLERD 126

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             LA  LQHE+DHL GILFID+LS LKR M  KK+ K ++ +
Sbjct: 127 DFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLKAQ 168


>gi|269968185|ref|ZP_06182216.1| peptide deformylase [Vibrio alginolyticus 40B]
 gi|269827183|gb|EEZ81486.1| peptide deformylase [Vibrio alginolyticus 40B]
          Length = 168

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 106/160 (66%), Gaps = 5/160 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67
            PDP L+  +  +  + S +  LID+MLE +Y+T +GIGLA+ Q+G    +VVID+ D  
Sbjct: 9   IPDPRLKVKAEKVTDV-STVQTLIDDMLETLYATGNGIGLASTQVGRKEAVVVIDISDE- 66

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R +P++ +NP++++  ++ ++ QEGCLS+P+Y ADV+R   + V  +D +     I +D
Sbjct: 67  -RNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDGNPITIESD 124

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+
Sbjct: 125 EFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVK 164


>gi|189347171|ref|YP_001943700.1| peptide deformylase [Chlorobium limicola DSM 245]
 gi|238692163|sp|B3EE19|DEF_CHLL2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189341318|gb|ACD90721.1| peptide deformylase [Chlorobium limicola DSM 245]
          Length = 185

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P+ I+ D +LR+ + P+E ++ ++  L+ NM E MYS  GIGLAA Q+G   RL+V+D  
Sbjct: 4   PINIYSDDVLRQQALPLEGVDKEVEELLGNMFETMYSAPGIGLAAPQVGRSLRLLVLDIS 63

Query: 63  -LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            ++++A+ K PMV INP+I+     +   +EGCLS+P  + DV R + I++ Y D + + 
Sbjct: 64  CMREYANVK-PMVVINPEIVAVKG-YRSMEEGCLSLPGLQGDVVRPSSISLNYRDEHFEG 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Q     GLLA  LQHE+DHL+G LF+D L + +R  + K++  L   R
Sbjct: 122 QNAEFSGLLARVLQHEIDHLDGRLFVDRLQKKERRKVQKELDALASGR 169


>gi|116073817|ref|ZP_01471079.1| peptide deformylase [Synechococcus sp. RS9916]
 gi|116069122|gb|EAU74874.1| peptide deformylase [Synechococcus sp. RS9916]
          Length = 201

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 88/141 (62%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ +R I K++  +  L  +ML  MY+  GIGLAA Q+GV  +L+VIDL       
Sbjct: 38  DEVLRQEARRISKVDESVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDLDLETPSS 97

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I T S     Y+EGCLSIP    DV R   I + Y D   + + + ADGL+
Sbjct: 98  PPLVLINPEITTASATVDTYEEGCLSIPGVYLDVVRPTAIQLSYRDEMGRPKTMKADGLM 157

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A C+QHE+DHL G+LF+D ++
Sbjct: 158 ARCIQHEMDHLKGVLFVDRVT 178


>gi|134093408|ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicoxydans]
 gi|133737311|emb|CAL60354.1| Peptide deformylase (PDF) [Herminiimonas arsenicoxydans]
          Length = 176

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 97/156 (62%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L ++++P+   ++ I  L+ +M E MY   G+GLAA Q+ V  +++VID  +   
Sbjct: 9   YPDSRLHKIAKPVTTFDARIKTLVADMAETMYDAPGVGLAASQVDVHEQVIVIDTSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R     +INP++I  S +  +Y EGCLS+P     V+R A + VR  D + +   + A+G
Sbjct: 67  RTELRAYINPELIWVSPEMQIYDEGCLSVPGVYDGVERHAKVKVRAYDADGKQFELEAEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LKR+ I  KM K
Sbjct: 127 LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKMLK 162


>gi|127513031|ref|YP_001094228.1| peptide deformylase [Shewanella loihica PV-4]
 gi|126638326|gb|ABO23969.1| peptide deformylase [Shewanella loihica PV-4]
          Length = 163

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 103/160 (64%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R ++P+E I + +   ID+++E MY TD GIGLAA Q+G  + ++VIDL 
Sbjct: 6   ILTIPDERLKRKAKPVEDIAA-VQGFIDDLIETMYHTDDGIGLAATQVGSEHAILVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  PMV INP+ +  S +  V +EGCLSIP YRA V R   + V+ ++   +   I
Sbjct: 65  ED--RDQPMVVINPEFVERSGEI-VGEEGCLSIPGYRAKVTRFEKVKVKALNREGEAFEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K
Sbjct: 122 ESDDFLAIVLQHEMDHLDGKVFIEHLSPLKQQIALKKVKK 161


>gi|325105696|ref|YP_004275350.1| peptide deformylase [Pedobacter saltans DSM 12145]
 gi|324974544|gb|ADY53528.1| peptide deformylase [Pedobacter saltans DSM 12145]
          Length = 188

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 99/171 (57%), Gaps = 5/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+L++V+  IEK   ++  LI+NM E M + +G+GLAA QIG+  RL VI
Sbjct: 1   MKLPIVAYGDPVLKKVAVDIEKDYPELPALIENMFETMDNANGVGLAAPQIGLSIRLFVI 60

Query: 62  DLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D    A     +     +FINP I   S     + EGCLSIPD R DV R   IT+ Y D
Sbjct: 61  DATPFADEDASLASFKKIFINPIITDESGKEWKFNEGCLSIPDIREDVSRKEQITISYFD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            N  H     +GL A  +QHE DH+ G LF D +S LK+ M+  K+  +V+
Sbjct: 121 ENWIHHEDTFNGLAARVIQHEYDHIQGKLFTDRISPLKKAMLKGKLDAIVK 171


>gi|254431727|ref|ZP_05045430.1| peptide deformylase [Cyanobium sp. PCC 7001]
 gi|197626180|gb|EDY38739.1| peptide deformylase [Cyanobium sp. PCC 7001]
          Length = 183

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 87/141 (61%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR  +R I K++  +  L  +ML  MY+  GIGLAA Q+GV  +L+VIDL       
Sbjct: 20  DAVLRTPARRISKVDEAVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDLDPDNPAT 79

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            PMV INP+I +F      Y+EGCLSIP    +V R   + V + D   + Q +  DGLL
Sbjct: 80  PPMVLINPEIRSFGGSLDTYEEGCLSIPGVYLNVVRPTAVEVSFRDEMGRPQKLRTDGLL 139

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A C+QHE+DHLNG+LF+D ++
Sbjct: 140 ARCIQHEMDHLNGVLFVDRVT 160


>gi|90579699|ref|ZP_01235508.1| peptide deformylase [Vibrio angustum S14]
 gi|90439273|gb|EAS64455.1| peptide deformylase [Vibrio angustum S14]
          Length = 170

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 101/160 (63%), Gaps = 5/160 (3%)

Query: 10  PDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67
           P+P LR  +  +  + ++ I  LID+ML  MY T +GIGLAA Q+G    ++VIDL +  
Sbjct: 10  PNPKLRVQAEDVVDVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESIIVIDLSEE- 68

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R  P VF+NPKI+   ++  V QEGCLS+PDY ADV+R   I +  +D +     +  D
Sbjct: 69  -RNEPQVFVNPKIVR-GENPVVGQEGCLSVPDYYADVERFEKIELTALDRDGNDIHLERD 126

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             LA  LQHE+DHL GILFID+LS LKR M  KK+ K ++
Sbjct: 127 DFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLK 166


>gi|300775194|ref|ZP_07085056.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
 gi|300505934|gb|EFK37070.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
          Length = 190

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 97/159 (61%), Gaps = 13/159 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+  F DP+LR+V + I+K    +  LIDNM E MYS +GIGLAA QIG+  RL VID+ 
Sbjct: 4   PIRAFGDPVLRKVGKDIDKDYPGLQELIDNMFETMYSANGIGLAAPQIGLDIRLFVIDVT 63

Query: 64  -----QDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                +D+   K+ +     VFIN +I+  S +   + EGCLSIPD R DVKR   I + 
Sbjct: 64  PLAEDEDYEDIKDELAEFKKVFINAQILEESGEEWKFNEGCLSIPDVREDVKRKGTIVIE 123

Query: 114 YMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y D N  +H   ++D + A  +QHE DH+ GILF DHLS
Sbjct: 124 YYDENFVKHTETFSD-IRARVIQHEYDHIEGILFTDHLS 161


>gi|33239533|ref|NP_874475.1| peptide deformylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|39930846|sp|Q7VED2|DEF_PROMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33237058|gb|AAP99127.1| N-formylmethionyl-tRNA deformylase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 203

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 87/135 (64%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR+ ++ I K++ +I +L+  ML  MY+  GIGLAA QIG   +L+VIDL        P+
Sbjct: 41  LRQSAKRISKVDKNIRDLVKKMLHSMYAAKGIGLAAPQIGSQQQLLVIDLDIENSATPPI 100

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           + INP+I  FS     Y+EGCLSIP    DV R + I V + D   + + I ADGLLA C
Sbjct: 101 ILINPEITEFSATIDTYEEGCLSIPGVYLDVIRPSSIKVNFRDEMGRPKKINADGLLARC 160

Query: 134 LQHELDHLNGILFID 148
           +QHE+DHLNG+LF+D
Sbjct: 161 IQHEMDHLNGVLFVD 175


>gi|313894829|ref|ZP_07828389.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976510|gb|EFR41965.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 156

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 92/138 (66%), Gaps = 4/138 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+L++V+ PI+++      L+D+M E MYS +G+GLAA QIG   R+VVID++D     
Sbjct: 11  DPVLKQVAEPIDRLTKRHRQLLDDMAETMYSANGVGLAAPQIGKSIRMVVIDVEDE---H 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP +IT  +   V  EGCLS+P    DV+R+A +TV Y D  ++ + + A+GLL
Sbjct: 68  GLLELINP-VITMREGTVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSRRRSLTAEGLL 126

Query: 131 ATCLQHELDHLNGILFID 148
           A C+QHE DHL+G LFID
Sbjct: 127 ARCIQHECDHLDGRLFID 144


>gi|257457589|ref|ZP_05622756.1| peptide deformylase [Treponema vincentii ATCC 35580]
 gi|257444975|gb|EEV20051.1| peptide deformylase [Treponema vincentii ATCC 35580]
          Length = 173

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 4/154 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +  LR+ S+P+E I+  +  LI  M   M   +GIGLAA QIG   RL ++ + D   R 
Sbjct: 8   EETLRQPSKPVEHIDEALHELIREMFITMDEDNGIGLAAPQIGKNVRLFIVKIDDGIER- 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              VFINP I+  S+    Y+EGCLSIP   ADV R   +TV+Y D N + + I A GLL
Sbjct: 67  ---VFINPLIVGTSEKQCSYEEGCLSIPKMFADVVRPEAVTVQYQDMNGRRRTIEATGLL 123

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A  +QHE DHL G+LFID LS  +RD +  K ++
Sbjct: 124 ARVIQHEYDHLEGVLFIDRLSEKERDSLVAKFTQ 157


>gi|110637113|ref|YP_677320.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
 gi|123163813|sp|Q11X86|DEF_CYTH3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110279794|gb|ABG57980.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
          Length = 184

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 102/166 (61%), Gaps = 3/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DP+L++V++ IEK + D++ +  +M E M +  G+GLAA Q+ +  R+ VID  
Sbjct: 4   PIVAYGDPVLKKVAQDIEKGSLDVVKMSADMFETMENAHGVGLAAPQVALNLRMFVIDTS 63

Query: 65  DHAHRK-NPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                K  P+   FINP I     D   Y+EGCLSIP  RADV R A + +RY D + + 
Sbjct: 64  VFDDEKITPVRKTFINPVIEEEWGDEWPYEEGCLSIPGVRADVYRPANLRIRYFDTDWKE 123

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   DG+ A  +QHE DH+ G+LF+DHLS +K+ ++  K++ + +
Sbjct: 124 HVEEFDGMTARVIQHEYDHIEGVLFVDHLSSIKKRLLKGKLTNISK 169


>gi|329924705|ref|ZP_08279720.1| peptide deformylase [Paenibacillus sp. HGF5]
 gi|328940539|gb|EGG36861.1| peptide deformylase [Paenibacillus sp. HGF5]
          Length = 172

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 100/151 (66%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG  GLAA QIG+L RL+
Sbjct: 1   MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  +       +  INP+I+   D   +  E CLS P Y   VKR+  +TV+ ++   
Sbjct: 61  VMDCGEGL-----IELINPEIVEM-DGEQMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  I+  +  LA C+QHE+DHLNGILF+DH+
Sbjct: 115 ETVILKGEDYLARCMQHEIDHLNGILFVDHV 145


>gi|317967982|ref|ZP_07969372.1| peptide deformylase [Synechococcus sp. CB0205]
          Length = 200

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 89/141 (63%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR  +R I K++  +  L  +ML  MY+  GIGLAA QIGV  +L+VIDL+      
Sbjct: 37  DEVLREPARRIGKVDDAVRKLATDMLVSMYAAKGIGLAAPQIGVNQQLLVIDLELEDPSS 96

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I +       Y+EGCLSIP    DV R + + V Y D   + + + ADGL+
Sbjct: 97  PPLVLINPEITSVGGGLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDAFGRPKRMKADGLM 156

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A C+QHE+DHLNG+LF+D ++
Sbjct: 157 ARCIQHEMDHLNGVLFVDRVT 177


>gi|282900896|ref|ZP_06308832.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194234|gb|EFA69195.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii
           CS-505]
          Length = 190

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 99/155 (63%), Gaps = 4/155 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I KI+ ++  LI +ML+ MYS DGIGLAA Q+GV  +LVVID        
Sbjct: 24  DRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKPEM 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP I   S +  V QEGCLSIP    +VKR   + + Y D   + Q + AD LL
Sbjct: 84  PPLILINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADNLL 143

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDM-ITKKMSK 164
           A C+ HE+DHLNG++F+D   R++  + +T+++SK
Sbjct: 144 ARCILHEMDHLNGVVFVD---RVENSLSLTEELSK 175


>gi|17544789|ref|NP_518191.1| peptide deformylase [Ralstonia solanacearum GMI1000]
 gi|23396562|sp|Q8Y3B0|DEF1_RALSO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|17427078|emb|CAD13598.1| probable peptide deformylase 1 (pdf 1) (polypeptide deformylase1)
           protein [Ralstonia solanacearum GMI1000]
          Length = 169

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 2/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ ID+ +   
Sbjct: 9   YPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVITIDVSES-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R    VFINP+I+  S+   V+ EGCLS+PD    V+R   + VR ++   +   +  DG
Sbjct: 67  RDELRVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESFELETDG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS LK++ I  K+ K
Sbjct: 127 LLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKK 162


>gi|260434658|ref|ZP_05788628.1| peptide deformylase [Synechococcus sp. WH 8109]
 gi|260412532|gb|EEX05828.1| peptide deformylase [Synechococcus sp. WH 8109]
          Length = 201

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 88/141 (62%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ +R I K+N  +  L  +ML  MY+  GIGLAA Q+G+  +L+VIDL       
Sbjct: 38  DEVLRQSARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAAT 97

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I   S     Y+EGCLSIP    DV R   I + + D   + + + ADGL+
Sbjct: 98  PPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLM 157

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A C+QHE+DHLNG+LF+D ++
Sbjct: 158 ARCIQHEMDHLNGVLFVDRVT 178


>gi|72383267|ref|YP_292622.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
 gi|123773734|sp|Q46HV9|DEF_PROMT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|72003117|gb|AAZ58919.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
          Length = 202

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 94/149 (63%), Gaps = 2/149 (1%)

Query: 5   PLVIFP--DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL ++   D  LR  +  I K++  I  L  +ML  MYS+ GIGLAA Q+G+  RL+VID
Sbjct: 30  PLKVYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVID 89

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           L+       PMVFINP+II+ S     Y+EGCLSIP    +V R + I + Y D   + +
Sbjct: 90  LKFEDPNSPPMVFINPEIISSSATLDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPK 149

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            + ADGL+A C+QHE+DHLNG+ F+D ++
Sbjct: 150 KMNADGLMARCIQHEIDHLNGVCFVDKVT 178


>gi|148245003|ref|YP_001219697.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326830|dbj|BAF61973.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA]
          Length = 180

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 110/178 (61%), Gaps = 15/178 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PD  LR  ++ +  +N  I  LI NM E MY+ +GIGLAA Q+    ++VVID+ 
Sbjct: 4   PILSYPDKRLRIKAKNVNIVNKTIQTLIKNMFETMYARNGIGLAATQVNQHLQIVVIDVP 63

Query: 65  DH----AHRKN----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +      +RKN          P+ FINP+I         + EGCLS+ D++A+++R+  I
Sbjct: 64  NSQFLFKNRKNNSQKLLQKQHPLCFINPEIKEKYGQ-EKHTEGCLSVSDFQAEIQRANHI 122

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            V+ ++   +  I+ A GLLA C+QHE+DHL GILF+D+LS+LK+  + +++ K+ ++
Sbjct: 123 KVKALNEKGEIFILQATGLLAICIQHEIDHLKGILFVDYLSKLKQKRLLERIKKMTKV 180


>gi|78224736|ref|YP_386483.1| formylmethionine deformylase [Geobacter metallireducens GS-15]
 gi|78195991|gb|ABB33758.1| Formylmethionine deformylase [Geobacter metallireducens GS-15]
          Length = 168

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 103/166 (62%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  +P++ +P P+L++VS  +  I+ +I  LID++L+ M +  G +G+AA QIG   R+ 
Sbjct: 1   MPAQPILCYPHPVLKKVSHAVAVIDDEIRGLIDDLLDTMRAGPGSVGVAAPQIGATLRVC 60

Query: 60  VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+    H K      +V +NP+I+   +  ++ +EGC+S+PDY  DV+R+  ITVR+ 
Sbjct: 61  VVDVSGSRHGKENNHGVLVMVNPEIV-HREGAAIMREGCMSVPDYTGDVERATTITVRFR 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           D     + I A G  A  +QHE+DHL+GILF+D +  LK  +  +K
Sbjct: 120 DGEGTEREISASGFEAVAIQHEMDHLDGILFLDRIVSLKTGLFRRK 165


>gi|110597712|ref|ZP_01385996.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031]
 gi|110340619|gb|EAT59099.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031]
          Length = 186

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 104/165 (63%), Gaps = 3/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+ D ILR+ ++P++ I+S I  LI +M E M + +GIGLAA Q+G   RL+V+DL 
Sbjct: 4   PINIYSDDILRQKAKPLKGIDSTIEALIASMFESMRNAEGIGLAAPQVGHSVRLLVLDLS 63

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D+   + PMV INP I+  S   +V +EGCLSIP    DV+R A I+++Y D +   +
Sbjct: 64  CIDNYANEKPMVVINPHILAVSG-CNVMEEGCLSIPGVNGDVERPAVISLKYRDEHFLER 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                G+LA  LQHE+DHL+G LF+D + +  R  I K+++ +  
Sbjct: 123 TREFSGMLARALQHEIDHLDGTLFVDRMEKRSRKKIQKELTDIAS 167


>gi|261416784|ref|YP_003250467.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373240|gb|ACX75985.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325617|gb|ADL24818.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 179

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 95/166 (57%), Gaps = 3/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+ DP+LR+   PI +I  ++  L  +MLE MY   G GLAA QIG   RLVVID  
Sbjct: 5   PIRIYGDPVLRKKCEPITEITPELRQLAKDMLETMYDAPGCGLAAPQIGKNIRLVVIDTA 64

Query: 65  -DHAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                   P +  NP+     D  +V Y EGCLS+P+   +V R   +TVR+ D N + Q
Sbjct: 65  IPDEEEPRPYIMFNPEWEAEPDAKNVDYDEGCLSLPEIFCNVVRPDRVTVRFFDINGEAQ 124

Query: 123 IIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            I+  +GL A C+QHE DHLNG LF+D +S   R M   K+ K+ +
Sbjct: 125 EIHNCEGLFARCIQHECDHLNGDLFVDKISTSDRTMNQSKLRKMAK 170


>gi|282896056|ref|ZP_06304082.1| Polypeptide deformylase [Raphidiopsis brookii D9]
 gi|281198974|gb|EFA73849.1| Polypeptide deformylase [Raphidiopsis brookii D9]
          Length = 218

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 4/155 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I KI+ ++  LI +ML+ MYS DGIGLAA Q+GV  +LVVID        
Sbjct: 52  DRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKPEI 111

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP I   S +  V QEGCLSIP    +VKR   + + Y D   + Q + AD LL
Sbjct: 112 PPLVLINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADNLL 171

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDM-ITKKMSK 164
           A C+ HE+DHLNG++F+D   R++  + +T+++SK
Sbjct: 172 ARCILHEMDHLNGVVFVD---RVENSLSLTEELSK 203


>gi|333029959|ref|ZP_08458020.1| Peptide deformylase [Bacteroides coprosuis DSM 18011]
 gi|332740556|gb|EGJ71038.1| Peptide deformylase [Bacteroides coprosuis DSM 18011]
          Length = 186

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 97/168 (57%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR V++ I     ++  LI NM E M   DGIGLAA QIG+  RLVV+DL 
Sbjct: 4   PIYVYGQPVLREVAKDITPEYPNLKELIQNMFETMEHADGIGLAAPQIGLSIRLVVMDLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D    K    VFINP I     D     EGCLS+P    DV R   + V Y D N 
Sbjct: 64  VLSEDFPELKGFRKVFINPYIEEVDGDDITMGEGCLSLPGIGEDVTRPDVVYVTYQDENF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      +G LA  +QHE DHL+GI+FIDH+S L++ MI  K++K+V+
Sbjct: 124 EKHTEKVEGYLARVMQHEFDHLDGIMFIDHISPLRKQMIRSKLNKMVK 171


>gi|295134935|ref|YP_003585611.1| peptide deformylase [Zunongwangia profunda SM-A87]
 gi|294982950|gb|ADF53415.1| peptide deformylase [Zunongwangia profunda SM-A87]
          Length = 196

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 12/173 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DP+L++ ++PI+K    +  LI NM + MY+  G+GLAA Q+GV  RL VID  
Sbjct: 4   PIVAYGDPVLKKKAKPIDKDYPKLEELISNMWDTMYNAYGVGLAAPQVGVPIRLFVIDAA 63

Query: 65  DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A             +    VFIN K+I  + D   + EGCLSIPD R D+ R   +T+
Sbjct: 64  PFAEDDDLTAEEKEYLKGFKRVFINAKVIEETGDEWAFSEGCLSIPDVREDIFRKPEVTI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Y D N + +     GL A  +QHE DH  GILF + +S LK+ +I  ++ K+
Sbjct: 124 EYQDQNFETKKETFTGLAARVVQHEYDHTEGILFTEKISSLKKRLINGRLKKI 176


>gi|229522817|ref|ZP_04412231.1| peptide deformylase [Vibrio cholerae TM 11079-80]
 gi|229340034|gb|EEO05042.1| peptide deformylase [Vibrio cholerae TM 11079-80]
          Length = 168

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 106/165 (64%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP LR  S+ +  + S +  LID++L+ + +TD GIGLAA Q+G    +VVIDL 
Sbjct: 6   ILTAPDPRLRLQSKQVTDVAS-VQTLIDDLLDTLCATDNGIGLAAPQVGREEAIVVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D+  R  P+V INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D   +   I
Sbjct: 65  DN--RDQPLVLINPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 122 ETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|260887303|ref|ZP_05898566.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
 gi|330838943|ref|YP_004413523.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
 gi|260862939|gb|EEX77439.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
 gi|329746707|gb|AEC00064.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
          Length = 155

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 93/145 (64%), Gaps = 6/145 (4%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           P+L+ +  P+E++++ +  L+D+M E MY  +GIG+AA Q+G   R+VVID+ D      
Sbjct: 12  PVLKEICAPVERVDARLRKLLDDMAETMYEANGIGIAAPQVGEALRMVVIDIGD-----G 66

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  +NPKI TF +      EGCLS+P    +V+R+A + V ++D   + + I A GLLA
Sbjct: 67  IIELVNPKI-TFREGSETDSEGCLSVPGIFGEVERAAKVKVEFLDRRGKRKHITAKGLLA 125

Query: 132 TCLQHELDHLNGILFIDHLSRLKRD 156
            C+QHELDHL G+LFID    L+++
Sbjct: 126 RCIQHELDHLEGVLFIDVAQSLRKE 150


>gi|78213784|ref|YP_382563.1| peptide deformylase [Synechococcus sp. CC9605]
 gi|123756848|sp|Q3AHC4|DEF_SYNSC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78198243|gb|ABB36008.1| Formylmethionine deformylase [Synechococcus sp. CC9605]
          Length = 201

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 88/141 (62%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ +R I K+N  +  L  +ML  MY+  GIGLAA Q+G+  +L+VIDL       
Sbjct: 38  DEVLRQPARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAAT 97

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I   S     Y+EGCLSIP    DV R   I + + D   + + + ADGL+
Sbjct: 98  PPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLM 157

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A C+QHE+DHLNG+LF+D ++
Sbjct: 158 ARCIQHEMDHLNGVLFVDRVT 178


>gi|113970479|ref|YP_734272.1| peptide deformylase [Shewanella sp. MR-4]
 gi|113885163|gb|ABI39215.1| peptide deformylase [Shewanella sp. MR-4]
          Length = 163

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 103/160 (64%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R ++P++ I + I   ID+++E MY TD GIGLA+ Q+G    ++VIDL 
Sbjct: 6   ILTIPDERLKRKAQPVKDIEA-IQGFIDDLIETMYHTDDGIGLASTQVGSTDAVIVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           ++  R  P+V INP+I+  S ++ V +EGCLSIP YRA V R   + V  +D   +   I
Sbjct: 65  EN--RDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVSRFEKVKVTALDRQGKAIEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K
Sbjct: 122 ETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRK 161


>gi|114047714|ref|YP_738264.1| peptide deformylase [Shewanella sp. MR-7]
 gi|113889156|gb|ABI43207.1| peptide deformylase [Shewanella sp. MR-7]
          Length = 163

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 103/160 (64%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R ++P++ I + I   ID+++E MY TD GIGLA+ Q+G    ++VIDL 
Sbjct: 6   ILTIPDERLKRKAQPVKDIEA-IQGFIDDLIETMYHTDDGIGLASTQVGSTDAVIVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           ++  R  P+V INP+I+  S ++ V +EGCLSIP YRA V R   + V  +D   +   I
Sbjct: 65  EN--RDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVSRFEKVKVTALDRQGKAIEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K
Sbjct: 122 ETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRK 161


>gi|306840629|ref|ZP_07473381.1| peptide deformylase [Brucella sp. BO2]
 gi|306289367|gb|EFM60603.1| peptide deformylase [Brucella sp. BO2]
          Length = 164

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 99/165 (60%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   + D+  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L        P  +INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELD---RTTGPKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRLKR+ + K+  KL
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLKRERLIKRYEKL 162


>gi|71281182|ref|YP_267165.1| peptide deformylase [Colwellia psychrerythraea 34H]
 gi|71146922|gb|AAZ27395.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
          Length = 166

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 101/159 (63%), Gaps = 5/159 (3%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAH 68
           P+  L   ++P+  + S I  LID+++E MY T DGIGLAA Q+G    +VVID+ D+  
Sbjct: 10  PNDKLIEQAKPVSDV-SQIQMLIDDLIETMYDTEDGIGLAATQVGRSEAVVVIDISDN-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V +NP +IT  +  +  QEGCLSIP Y ADV+R   +TV  +D N +   I +D 
Sbjct: 67  RDELLVLVNP-VITHGEATAKGQEGCLSIPGYYADVERFTHVTVEALDRNGKELTITSDE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            LA  +QHE+DHL G LFID+LS LK+ M  KK+ K ++
Sbjct: 126 FLAIVMQHEIDHLKGKLFIDYLSPLKQQMALKKVKKTIK 164


>gi|86133858|ref|ZP_01052440.1| polypeptide deformylase [Polaribacter sp. MED152]
 gi|85820721|gb|EAQ41868.1| polypeptide deformylase [Polaribacter sp. MED152]
          Length = 196

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 96/175 (54%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DP+LR++   I+K   ++  LI NM E MY+  G+GLAA QIG   RL VID  
Sbjct: 4   PIVAYGDPVLRKMGVEIDKDYPNLKELIANMKETMYNASGVGLAAPQIGKAIRLFVIDAS 63

Query: 65  DHAHRKNPM------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A   +              V+INPKII    +   + EGCLSIPD R DV R + +T+
Sbjct: 64  PFAEDDDLDDEERATLKDFNRVYINPKIIDEEGEEWTFNEGCLSIPDVREDVTRKSKVTL 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y D +        DGL A   QHE DH+ G+LF D +S LK+ +I +K+  + +
Sbjct: 124 EYQDEDFNTHTEVLDGLAARVFQHEYDHIEGVLFTDKVSSLKKRLIKRKLENISK 178


>gi|123967617|ref|YP_001008475.1| peptide deformylase [Prochlorococcus marinus str. AS9601]
 gi|158513947|sp|A2BNK7|DEF_PROMS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123197727|gb|ABM69368.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           AS9601]
          Length = 201

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 97/154 (62%), Gaps = 2/154 (1%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ S+ I K++  I  L   ML+ MY+  GIGLAA QIG+   L+VID+       
Sbjct: 38  DDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAA 97

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+I  F    + Y+EGCLSIP    +V R + I +++ D   + + + ADGLL
Sbjct: 98  EPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLL 157

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A C+QHE+DHLNGILF+D ++   +D + K++ K
Sbjct: 158 ARCIQHEMDHLNGILFVDRVT--SKDDLNKELLK 189


>gi|320530181|ref|ZP_08031251.1| peptide deformylase [Selenomonas artemidis F0399]
 gi|320137614|gb|EFW29526.1| peptide deformylase [Selenomonas artemidis F0399]
          Length = 156

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 93/138 (67%), Gaps = 4/138 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+L++V+ PI+++      L+D+M E MY+++G+GLAA QIG   R+VVID++D     
Sbjct: 11  DPVLKQVAEPIDRLTKRHRQLLDDMAETMYASNGVGLAAPQIGKSIRMVVIDVEDE---H 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  +NP +IT  +   V  EGCLS+P    DV+R+A +TV Y D  ++ + + A+GLL
Sbjct: 68  GLLELVNP-VITMREGSVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSRRRSLTAEGLL 126

Query: 131 ATCLQHELDHLNGILFID 148
           A C+QHE DHL+G LFID
Sbjct: 127 ARCIQHECDHLDGRLFID 144


>gi|126695417|ref|YP_001090303.1| peptide deformylase [Prochlorococcus marinus str. MIT 9301]
 gi|126542460|gb|ABO16702.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 201

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 97/154 (62%), Gaps = 2/154 (1%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ S+ I K++  I  L   ML+ MY+  GIGLAA QIG+   L+VID+       
Sbjct: 38  DDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAA 97

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+I  F    + Y+EGCLSIP    +V R + I +++ D   + + + ADGLL
Sbjct: 98  EPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLL 157

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A C+QHE+DHLNGILF+D ++   +D + K++ K
Sbjct: 158 ARCIQHEMDHLNGILFVDRVT--SKDDLNKELLK 189


>gi|308047745|ref|YP_003911311.1| peptide deformylase [Ferrimonas balearica DSM 9799]
 gi|307629935|gb|ADN74237.1| peptide deformylase [Ferrimonas balearica DSM 9799]
          Length = 171

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPD  LR V+ P+      +  L+D+M + MY   GIGLAA QI    +++V
Sbjct: 1   MAVREVLRFPDERLRTVAEPVTDFGPALQQLVDDMFDTMYEERGIGLAATQINEHVQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P VFINPKII     F+  +EGCLS+P   A V+R+  +     D    
Sbjct: 61  MDHSED--RSEPKVFINPKIIEEKGHFT-NEEGCLSVPGVYAKVERAEHVVFEAQDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LL+ C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 PFTVEADELLSICIQHEMDHLLGKLFVDYLSPLKRQRIKQKLEKQARL 165


>gi|255529965|ref|YP_003090337.1| peptide deformylase [Pedobacter heparinus DSM 2366]
 gi|255342949|gb|ACU02275.1| peptide deformylase [Pedobacter heparinus DSM 2366]
          Length = 186

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 2/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++ + DP+L++V  PIE+   D+  LI NM E MY+  G+GLAA Q+G+  RL ++
Sbjct: 1   MKLPIIAYGDPVLKKVCTPIEQTYPDLKQLISNMFETMYNAHGVGLAAPQVGLPIRLFIV 60

Query: 62  DLQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D       KN    VFIN +I+  + +   + EGCLSIPD R DV R   I ++Y D + 
Sbjct: 61  DTGADEGDKNKFKKVFINAEILEETGEPWAFNEGCLSIPDIREDVMRKPNIRIKYYDEHW 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +       G+ A  +QHE DH+ G LF D LS L++ M+  K+
Sbjct: 121 ELHEEEVSGMPARVIQHEYDHIEGKLFTDTLSLLRKTMLKSKL 163


>gi|241608057|ref|XP_002405931.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|215500709|gb|EEC10203.1| polypeptide deformylase, putative [Ixodes scapularis]
          Length = 164

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D +L+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKILQTLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ + + FINP+I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  N-NKSSTIAFINPEITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           A+G LAT +QHE+D+LNG  F+D+LS+LKRD + KK
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKK 164


>gi|148240477|ref|YP_001225864.1| peptide deformylase [Synechococcus sp. WH 7803]
 gi|147849016|emb|CAK24567.1| Peptide deformylase [Synechococcus sp. WH 7803]
          Length = 201

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 7/156 (4%)

Query: 3   KKPLVIFP-------DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           K+PL   P       D +LR  +R I K++  + +L  +ML  MY+  GIGLAA Q+GV 
Sbjct: 23  KEPLDTAPLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVH 82

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            +L+VIDL        P+V INP+I + S     Y+EGCLSIP    DV R + + V + 
Sbjct: 83  QQLLVIDLDPETASSPPLVLINPEITSASASLETYEEGCLSIPGVYLDVVRPSAVQVSFR 142

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           D   + + + ADGL+A C+QHE+DHL G+LF+D ++
Sbjct: 143 DEMGRPRTMKADGLMARCIQHEMDHLTGVLFVDRVT 178


>gi|52426256|ref|YP_089393.1| peptide deformylase [Mannheimia succiniciproducens MBEL55E]
 gi|81691285|sp|Q65QF2|DEF_MANSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|52308308|gb|AAU38808.1| Def protein [Mannheimia succiniciproducens MBEL55E]
          Length = 171

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 102/160 (63%), Gaps = 3/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++I+PD  L+ ++ P+ + N ++   ID+M E MY  +GIGLAA Q+ V  R++ ID+  
Sbjct: 6   VLIYPDERLKTIAEPVTEFNDELQTFIDDMFETMYQEEGIGLAATQVDVHKRVITIDIT- 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +V INP+++    +  + +  CLS+P  R  V R   +TV+ ++   +   ++
Sbjct: 65  -GEKTEQLVLINPELLDGEGETGIEEG-CLSLPGLRGFVPRKEKVTVKALNRQGEEFTLH 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ KL
Sbjct: 123 ADGLLAICIQHEIDHLNGIVFADYLSPLKRNRMKEKLVKL 162


>gi|295696040|ref|YP_003589278.1| peptide deformylase [Bacillus tusciae DSM 2912]
 gi|295411642|gb|ADG06134.1| peptide deformylase [Bacillus tusciae DSM 2912]
          Length = 155

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 93/141 (65%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR  ++P+ K+  +I  LID+M + MY+ DGIGLAA Q+G+L R++V D+ +     
Sbjct: 11  DPILREKAKPVSKVTPNIQRLIDDMADTMYNADGIGLAAPQVGILKRVIVADIGEGL--- 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  +NP+++   +      EGCLSIP  +ADV R+  + VR  D N +  ++ A+GLL
Sbjct: 68  --LGLVNPEVV-LEEGEQTGPEGCLSIPGIQADVTRAHHVIVRAQDRNGEPLVVDAEGLL 124

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A CL HE+DHL+GILF+D ++
Sbjct: 125 ARCLLHEIDHLDGILFLDRVT 145


>gi|303233239|ref|ZP_07319911.1| peptide deformylase [Atopobium vaginae PB189-T1-4]
 gi|302480629|gb|EFL43717.1| peptide deformylase [Atopobium vaginae PB189-T1-4]
          Length = 183

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 89/154 (57%), Gaps = 2/154 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K +V FP PIL+ V  P++ I SDI  L  +ML+VMY+TDG GLAA QIG   RLVVID+
Sbjct: 8   KEMVCFPSPILQTVCTPVKHITSDIKELAHHMLDVMYATDGCGLAAPQIGETIRLVVIDV 67

Query: 64  -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                  KNP V +NP I+T      +  EGCLS P     V R + +     + + +  
Sbjct: 68  DWSSTSAKNPYVLVNPTIVTADGKDRLMPEGCLSYPGIMVGVTRPSHVICEAYNLDGECM 127

Query: 123 IIYADG-LLATCLQHELDHLNGILFIDHLSRLKR 155
              A G L+A CLQHE DH+NGI   DHL  L++
Sbjct: 128 RYEATGNLMAACLQHECDHINGITIPDHLPPLEK 161


>gi|313673898|ref|YP_004052009.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940654|gb|ADR19846.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 167

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 5/157 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP LR   +P++K + ++  ++++M E MY+  G+GLAA Q+G+  RL +ID+   + 
Sbjct: 8   YPDPRLRVKCKPVDKFDEELKKIVNDMAETMYNAPGVGLAAPQVGIDKRLFIIDI---SK 64

Query: 69  RKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            KN + VFINP I+    +    +EGCLS+P   A+V R+  +     D N    II AD
Sbjct: 65  EKNDLKVFINPTILKKEGEI-CDEEGCLSVPGEYANVTRAEVVEAVAQDINGNEFIIKAD 123

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           GL+A  +QHELDHLNG LF+D L   KR+ + K + +
Sbjct: 124 GLMARAIQHELDHLNGTLFLDRLPAFKRESVKKHIKR 160


>gi|227484652|ref|ZP_03914968.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237372|gb|EEI87387.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172]
          Length = 161

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/138 (47%), Positives = 91/138 (65%), Gaps = 3/138 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR++SRP+E +   I  L+D+M E MY+ DG+GLAA Q+G L R++V+D +D     
Sbjct: 11  DPILRKISRPVEDVTDRIRILLDDMAETMYAADGVGLAAPQVGNLRRVIVVDPRD--GED 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           + +  +NP+I+   D   +  EGCLSIPD+ A VKR   + V+Y+D N + +I  A G  
Sbjct: 69  SLVKLVNPEILEM-DGEQIGVEGCLSIPDFNATVKRPEHVKVKYLDENGEEKIWDAHGFP 127

Query: 131 ATCLQHELDHLNGILFID 148
           A  L HE+DHLNGILF D
Sbjct: 128 AVILCHEIDHLNGILFKD 145


>gi|304316976|ref|YP_003852121.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778478|gb|ADL69037.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 159

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 93/143 (65%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPIL + ++ +EKI+  I+ ++D+M E MYS DG+GLAA QIG+L RLVV+D+ D     
Sbjct: 11  DPILYKKAKHVEKIDDHILMILDDMAETMYSADGVGLAANQIGILRRLVVVDVGD----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+II   +   + QEGCLS+P+  A+VKR   I V+Y D N   + I  +  L
Sbjct: 66  GLIELINPEII-LEEGEQIGQEGCLSVPNVTAEVKRPKKIKVKYQDRNGDIREIEGEDFL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  L HE+DHLNG+LF+D   R+
Sbjct: 125 ARALSHEIDHLNGVLFVDKAIRI 147


>gi|194334376|ref|YP_002016236.1| peptide deformylase [Prosthecochloris aestuarii DSM 271]
 gi|238693348|sp|B4S9B9|DEF_PROA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194312194|gb|ACF46589.1| peptide deformylase [Prosthecochloris aestuarii DSM 271]
          Length = 186

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 101/164 (61%), Gaps = 3/164 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+ D +LRR ++P++ I++    LI NM+E M +  GIGLAA QIG+  RL+++DL 
Sbjct: 4   PITIYSDEVLRRKAKPLKGIDTSHEELIGNMIESMRNASGIGLAAPQIGLSMRLLIVDLS 63

Query: 65  DHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                +N  PMV INP I+     ++  +EGCLSIPD  ADV R + I ++Y + + + +
Sbjct: 64  PVQGYENAEPMVVINPHILAVKG-YNAMEEGCLSIPDIHADVVRPSSIQLKYRNEHFEER 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +     L+A  LQHE+DHL+G LF+D L R  R  + K +  + 
Sbjct: 123 VDEFSALMARVLQHEIDHLDGTLFVDKLQRRDRRKVQKSLEDIA 166


>gi|124024845|ref|YP_001013961.1| peptide deformylase [Prochlorococcus marinus str. NATL1A]
 gi|158512738|sp|A2BZN6|DEF_PROM1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123959913|gb|ABM74696.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           NATL1A]
          Length = 202

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 93/149 (62%), Gaps = 2/149 (1%)

Query: 5   PLVIFP--DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL ++   D  LR  +  I K++  I  L  +ML  MYS+ GIGLAA Q+G+  RL+VID
Sbjct: 30  PLKVYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVID 89

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           L        PMVFINP+II+ S     Y+EGCLSIP    +V R + I + Y D   + +
Sbjct: 90  LNFEDPNSPPMVFINPEIISSSATVDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPK 149

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            + ADGL+A C+QHE+DHLNG+ F+D ++
Sbjct: 150 KMNADGLMARCIQHEIDHLNGVCFVDKVT 178


>gi|117920762|ref|YP_869954.1| peptide deformylase [Shewanella sp. ANA-3]
 gi|117613094|gb|ABK48548.1| peptide deformylase [Shewanella sp. ANA-3]
          Length = 163

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 102/160 (63%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R ++P++ I + I   ID+++E MY TD GIGLA+ Q+G    ++VIDL 
Sbjct: 6   ILTIPDERLKRKAQPVKDIEA-IQGFIDDLIETMYHTDDGIGLASTQVGSTDAVIVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P+V INP+I+  S ++ V +EGCLSIP YRA V R   + V  +D   +   I
Sbjct: 65  ET--RDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVTRFEKVKVTALDRQGKAIEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K
Sbjct: 122 ETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRK 161


>gi|32491245|ref|NP_871499.1| hypothetical protein WGLp496 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30172741|sp|Q8D258|DEF_WIGBR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|25166452|dbj|BAC24642.1| def [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 152

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 96/146 (65%), Gaps = 3/146 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P+  LR+++  I  I+S+I +LI NMLE MY  +GIGLAA Q+ V  R++VID+  + +
Sbjct: 9   YPNKKLRKIASNISLIDSEIKSLIKNMLETMYFNEGIGLAATQVDVHKRIIVIDISKNKN 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P++ INP  I        ++EGCLSIP   A V RS  + ++ ++C  +  ++ + G
Sbjct: 69  K--PLILINPVFINKCGA-QTFEEGCLSIPKKTAFVNRSKKVKIKAINCLGEEFLLKSKG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLK 154
           LLATC+QHE+DHL G LFID++  LK
Sbjct: 126 LLATCIQHEMDHLIGKLFIDYIKPLK 151


>gi|87125300|ref|ZP_01081146.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
 gi|86167069|gb|EAQ68330.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
          Length = 201

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 7/158 (4%)

Query: 1   MVKKPLVIFP-------DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG 53
           + K+PL + P       D +LR+ ++ I K+++ + +L  +ML  MY+  GIGLAA Q+G
Sbjct: 21  VTKEPLDVPPLEIHTLGDRVLRQPAKRISKVDAAVRDLARDMLRSMYTARGIGLAAPQVG 80

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V  +L+VIDL        P+V INP+I + S     Y+EGCLSIP    DV R + I + 
Sbjct: 81  VHKQLLVIDLDIENAAAPPLVLINPEITSASASVDTYEEGCLSIPGVYLDVVRPSAIQLS 140

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y D   + + + ADGL+A C+QHE+DHL G+LF+D ++
Sbjct: 141 YRDEMGRPRTMKADGLMARCIQHEMDHLKGVLFVDRVT 178


>gi|78778455|ref|YP_396567.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
 gi|123727935|sp|Q31DB4|DEF_PROM9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78711954|gb|ABB49131.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
          Length = 201

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 96/151 (63%), Gaps = 3/151 (1%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ S+ I K++  I  L   M++ MY+  GIGLAA QIG+   L+VID+       
Sbjct: 38  DDVLRQNSKRITKVDESIRKLTREMIQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAA 97

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+I  +    + Y+EGCLSIP    +V R + I +++ D   + + + ADGLL
Sbjct: 98  EPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLL 157

Query: 131 ATCLQHELDHLNGILFIDHLSR---LKRDMI 158
           A C+QHE+DHLNGILF+D ++    LK+++I
Sbjct: 158 ARCIQHEMDHLNGILFVDRVTSKDDLKKELI 188


>gi|242309635|ref|ZP_04808790.1| peptide deformylase [Helicobacter pullorum MIT 98-5489]
 gi|239523636|gb|EEQ63502.1| peptide deformylase [Helicobacter pullorum MIT 98-5489]
          Length = 169

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 106/162 (65%), Gaps = 4/162 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---D 62
           ++ +P+P+LR++S+PIE  +  +  L+D M E M + +G+G++A+Q+    R ++I   D
Sbjct: 5   VITYPNPLLRQISKPIENFDESLHQLLDAMYETMLNKNGVGISAIQVAKPIRALLICLPD 64

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            + + H++N +  INP+II  + +  ++ EGCLS+P++  +VKR + + + Y +   ++ 
Sbjct: 65  EEGNQHKENLLEIINPEIIEKNGEI-LFNEGCLSVPEFYEEVKRYSSLKIHYQNRYGENL 123

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + A+  LA  LQHE+DHLNGILFID LS +KR    K++ +
Sbjct: 124 QLEANDYLAVALQHEIDHLNGILFIDKLSIIKRKKFEKELKQ 165


>gi|91225452|ref|ZP_01260574.1| peptide deformylase [Vibrio alginolyticus 12G01]
 gi|91189815|gb|EAS76088.1| peptide deformylase [Vibrio alginolyticus 12G01]
          Length = 168

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 105/160 (65%), Gaps = 5/160 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHA 67
            PDP L+  +  +  + S I  LID+MLE +Y+T +GIGLA+ Q+G    +VVID+ D  
Sbjct: 9   IPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVVVIDISDE- 66

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R +P++ +NP++++  ++ ++ QEGCLS+P+Y ADV+R   + V  +D +     I + 
Sbjct: 67  -RNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDGNPITIESG 124

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+
Sbjct: 125 EFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVK 164


>gi|24374073|ref|NP_718116.1| peptide deformylase [Shewanella oneidensis MR-1]
 gi|32363156|sp|Q8EE60|DEF3_SHEON RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName:
           Full=Polypeptide deformylase 3
 gi|24348554|gb|AAN55560.1|AE015695_2 polypeptide deformylase [Shewanella oneidensis MR-1]
          Length = 163

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 102/160 (63%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  L+R ++P++ I + I   ID+++E MY TD GIGLA+ Q+G    ++VIDL 
Sbjct: 6   ILTIPDERLKRKAQPVKDIEA-IQGFIDDLIETMYHTDDGIGLASTQVGSTDAVIVIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P+V +NP+I+  S ++ V +EGCLSIP YRA V R   + V  +D   +   I
Sbjct: 65  ET--RDQPLVLVNPEIVEKSGEY-VGEEGCLSIPGYRAKVTRFEKVKVTALDRQGKAIEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K
Sbjct: 122 ETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRK 161


>gi|325972108|ref|YP_004248299.1| peptide deformylase [Spirochaeta sp. Buddy]
 gi|324027346|gb|ADY14105.1| Peptide deformylase [Spirochaeta sp. Buddy]
          Length = 167

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 94/158 (59%), Gaps = 4/158 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L    +P+ K +S +  L+D M E M   DG+GLAA Q+GV  RL VI +Q   +R 
Sbjct: 9   DEVLTEKCQPVTKFDSALRILVDAMFETMAEADGVGLAAPQVGVNSRLFVIHIQGSENR- 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
               +INP+II  S +    +EGCLSIP    DV+R A +TV+  D   +   + A+GLL
Sbjct: 68  ---AYINPQIIETSIETDTSEEGCLSIPGVWHDVQRPARVTVQAQDVEGKVFTVKAEGLL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A  +QHE DHLNG+LFID L+  +R+ + K   K  +L
Sbjct: 125 ARAIQHEYDHLNGVLFIDRLNDEEREKMVKAYEKRAKL 162


>gi|255657698|ref|ZP_05403107.1| peptide deformylase [Mitsuokella multacida DSM 20544]
 gi|260849886|gb|EEX69893.1| peptide deformylase [Mitsuokella multacida DSM 20544]
          Length = 155

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 4/144 (2%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           P+L+ V  P+EKI+ D+  L+D+M   MY +DG+GLAA Q+G   R+VVID QD      
Sbjct: 12  PVLKEVCAPVEKIDKDLRKLLDDMAVTMYESDGVGLAAPQVGRPIRVVVIDCQDD---HG 68

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  INP +ITF +  +   EGCLS+P    +V+R+A + V +++   + Q + A GLLA
Sbjct: 69  LIELINP-VITFREGTATDTEGCLSVPGIYGEVERAAKVKVEFLNRRGKKQHLTATGLLA 127

Query: 132 TCLQHELDHLNGILFIDHLSRLKR 155
            C+QHELDHL G LFID    L R
Sbjct: 128 RCIQHELDHLEGQLFIDIAKSLHR 151


>gi|86604850|ref|YP_473613.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
 gi|86553392|gb|ABC98350.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
          Length = 198

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 89/141 (63%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ + ++N +I  L  +ML+ MYS DGIGLAA Q+G+  RL+V+DL       
Sbjct: 24  DKVLRQPAKRVSQVNDEIRQLARHMLQTMYSADGIGLAAPQVGIPKRLIVVDLYPDKPEV 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I  +  +    QEGCLSIP    +V R   + V + D   + + + AD LL
Sbjct: 84  PPLVLINPEIREYLGEVVAGQEGCLSIPGVFCEVMRPQGVVVSFKDETGRPRTLQADDLL 143

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  +QHE+DHLNG+LF+DH+ 
Sbjct: 144 ARVIQHEIDHLNGVLFVDHVE 164


>gi|94264678|ref|ZP_01288460.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93454909|gb|EAT05153.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 263

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 106/184 (57%), Gaps = 19/184 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  +RP+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           I          D +D        A  +NP +V INP+++    +  V +EGCLS+ DY +
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            VKR A + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+
Sbjct: 191 KVKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250

Query: 163 SKLV 166
            K++
Sbjct: 251 KKII 254


>gi|126640269|ref|YP_001083253.1| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
           ATCC 17978]
          Length = 142

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M E MY+  GIGLAA Q+    +L+V+DL +   +  PMVFINPK+   +++   Y+EGC
Sbjct: 1   MFETMYAAPGIGLAASQVDRHIQLIVMDLSES--KDEPMVFINPKVTPLTEETQPYEEGC 58

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           LS+P     V R + + +  ++   Q   I ADGLLA C+QHE+DHLNG LF+D+LS LK
Sbjct: 59  LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 118

Query: 155 RDMITKKMSKLVQLRD 170
           R    +K+ K+V+ R+
Sbjct: 119 RQRAREKVEKIVRQRE 134


>gi|148241454|ref|YP_001226611.1| peptide deformylase [Synechococcus sp. RCC307]
 gi|166198524|sp|A5GQU9|DEF_SYNR3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|147849764|emb|CAK27258.1| Peptide deformylase [Synechococcus sp. RCC307]
          Length = 201

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 86/138 (62%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR+ ++ I K+N  +  L   ML  MY+  GIGLAA Q+GV  +L+VIDL        P+
Sbjct: 41  LRKPAKRISKVNEQVRELAREMLRSMYAAHGIGLAAPQVGVHQQLLVIDLDPEEAANPPL 100

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V INP+I+  S     Y+EGCLSIP    +V R + + V+Y D   + Q   ADGL+A C
Sbjct: 101 VLINPEIVATSGALDTYEEGCLSIPGVYLNVVRPSQVDVKYRDELGRPQRRKADGLMARC 160

Query: 134 LQHELDHLNGILFIDHLS 151
           + HE+DHLNG+LF+D +S
Sbjct: 161 ILHEMDHLNGVLFVDRVS 178


>gi|148270260|ref|YP_001244720.1| peptide deformylase [Thermotoga petrophila RKU-1]
 gi|166198525|sp|A5ILS1|DEF_THEP1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|147735804|gb|ABQ47144.1| peptide deformylase [Thermotoga petrophila RKU-1]
          Length = 164

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 94/155 (60%), Gaps = 5/155 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D+ +  
Sbjct: 6   VFGDPVLRKRAKPVTKFDDNLEKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-- 63

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               P+  INP+I+    +  V +EGCLS P+   +++RS  I VRY +   ++     +
Sbjct: 64  ---GPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVRYQNTKGEYVEEVLE 120

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           G  A   QHE DHLNG+L ID +S  KR ++ KK+
Sbjct: 121 GYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKL 155


>gi|149278151|ref|ZP_01884289.1| peptide deformylase [Pedobacter sp. BAL39]
 gi|149230917|gb|EDM36298.1| peptide deformylase [Pedobacter sp. BAL39]
          Length = 184

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 1/162 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+L++V  PIE+   ++  LI NM E MY+  G+GLAA QIG+  RL VI
Sbjct: 1   MKLPIVAYGDPVLKKVCAPIEQDYPELKQLISNMFETMYNAHGVGLAAPQIGLPIRLFVI 60

Query: 62  DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D   D        V+IN +I+  + +   + EGCLSIPD R DV R   I +RY D N +
Sbjct: 61  DTGGDEDEDGVKRVYINAEILEENGEPWAFNEGCLSIPDIREDVMRKPNIRIRYYDENWE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
                  G+LA  +QHE DH+ G LF + LS L++ M+  K+
Sbjct: 121 LHEKEVTGMLARVIQHEYDHIQGKLFTETLSLLRKRMLQSKL 162


>gi|326798583|ref|YP_004316402.1| peptide deformylase [Sphingobacterium sp. 21]
 gi|326549347|gb|ADZ77732.1| Peptide deformylase [Sphingobacterium sp. 21]
          Length = 190

 Score =  127 bits (318), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 100/173 (57%), Gaps = 8/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+L+R +  I+K   ++ NLI NM E MY+  G+G+AA Q+G+  RL V+
Sbjct: 1   MKLPIVAYGDPVLKRKAIDIDKDYPELENLIANMFETMYAAHGVGIAAPQVGLSIRLFVV 60

Query: 62  DLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D    A    P       VFIN  I     +   + EGCLSIPD R DV R + I +RY 
Sbjct: 61  DASPFAEDDAPELKDFKKVFINAHIEEEEGEKWEFNEGCLSIPDIREDVSRHSIIHIRYF 120

Query: 116 DCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D N  +H+  Y DGL A  +QHE DH+ G LF D LS L++ M+  K+  + +
Sbjct: 121 DENWVEHREKY-DGLAARVIQHEYDHIEGKLFTDRLSVLRKAMLKSKLDAISK 172


>gi|117621144|ref|YP_856896.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562551|gb|ABK39499.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 166

 Score =  127 bits (318), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP L   +  +E I + +  LID+MLE +Y+TD GIGLAA Q+G    +V+IDL 
Sbjct: 6   ILTVPDPRLGIKAEQVEDIAA-VQGLIDDMLETLYATDNGIGLAATQVGRKEAIVIIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P+V INP++ T   + ++ QEGCLS+PDY ADV+R   + V  +D +     +
Sbjct: 65  EK--RDQPLVLINPQV-TSGTEPALGQEGCLSVPDYYADVERYGSVVVSALDRHGVPITV 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   LA  +QHE+DHL G +FID+LS LKR M  KK+ K
Sbjct: 122 KSSDFLAIVMQHEIDHLQGKVFIDYLSPLKRKMALKKVKK 161


>gi|116621863|ref|YP_824019.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076]
 gi|116225025|gb|ABJ83734.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076]
          Length = 171

 Score =  127 bits (318), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 101/167 (60%), Gaps = 2/167 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+V F DP+L R +  + + ++ ++   +D+M E MY+  G+GLAA QIGV  ++ VID+
Sbjct: 4   PIVKFGDPVLEREADTVTEFDTPELHKFLDDMFESMYAAKGVGLAAPQIGVSKKIAVIDV 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +  +  + +V INPKI+   D     +EGCLSIP +R  V+R+  +T+R  +   +   
Sbjct: 64  SNGENADDKLVIINPKILKI-DGKQEGEEGCLSIPGFREQVRRARCVTIRAQNAKGEEFE 122

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + LLA    HE DHL G L+I H+S LKRD++ +K+ KL +  D
Sbjct: 123 KTGEDLLARAFLHETDHLYGRLYITHISALKRDLMKRKIKKLQRAGD 169


>gi|254409726|ref|ZP_05023507.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
 gi|196183723|gb|EDX78706.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
          Length = 190

 Score =  127 bits (318), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 86/141 (60%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ + K++  I  L   ML+ MYS DGIGLAA Q+GV  +++VID +      
Sbjct: 26  DRVLRQPAKRVAKVDQSIRQLAHQMLQTMYSADGIGLAAPQVGVNKQIIVIDCEPDNPEN 85

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP I  F       QEGCLS+P    DVKR   + V Y D N + Q + ADGLL
Sbjct: 86  PPLILINPTIKRFGQSICDAQEGCLSVPGVYLDVKRPVEVEVAYKDENGRPQRLKADGLL 145

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           +  +QHE+DHL G++F+D + 
Sbjct: 146 SRAIQHEMDHLTGVMFVDRVE 166


>gi|51244598|ref|YP_064482.1| peptide deformylase [Desulfotalea psychrophila LSv54]
 gi|81692939|sp|Q6AQ98|DEF_DESPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|50875635|emb|CAG35475.1| probable peptide deformylase [Desulfotalea psychrophila LSv54]
          Length = 169

 Score =  127 bits (318), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 95/161 (59%), Gaps = 2/161 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +PDP+LR+ +  I   +  ++ L ++M E MY   GIGLAA QIG   +LVV+    
Sbjct: 6   ICTYPDPVLRKETVAITVFDEKLVKLTEDMAETMYDAPGIGLAAPQIGESLKLVVVSTAR 65

Query: 66  HAHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               K   MV  NP+I+   ++  V +EGCLS+P+  A VKR   I V Y D N +   +
Sbjct: 66  REDSKQEYMVMANPEIVE-KEESQVDEEGCLSVPELLAMVKRYRKIKVNYQDINGEPCSM 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             +   A  LQHE+DHLNGILF+DHLS LKR++  KK+ K 
Sbjct: 125 TVEDRFAVVLQHEIDHLNGILFLDHLSSLKRNLYKKKVKKW 165


>gi|85700137|gb|ABC74518.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 103/160 (64%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+MLE M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMLETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|220903297|ref|YP_002478609.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867596|gb|ACL47931.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 172

 Score =  126 bits (317), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 96/163 (58%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDP L+ V  P+ ++  +I  L  +MLE MY   G+GLAA Q+G   R++V+D   
Sbjct: 5   IVTYPDPRLKEVCEPVAEVTDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVMDPSA 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQII 124
               +NP V INP +    ++    QEGCLS+P +YRADVKR + + +   D +      
Sbjct: 65  QKDERNPRVLINPVLTLSGEEIISEQEGCLSVPMNYRADVKRMSRVHLSATDLDGNAIEE 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             +   A  +QHE DHL+GILFID +SRL+R +   K+ K ++
Sbjct: 125 DLEDFDAIVMQHEYDHLDGILFIDKVSRLRRSLYDSKVKKWLK 167


>gi|152991610|ref|YP_001357331.1| peptide deformylase [Sulfurovum sp. NBC37-1]
 gi|151423471|dbj|BAF70974.1| formylmethionine deformylase [Sulfurovum sp. NBC37-1]
          Length = 174

 Score =  126 bits (317), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 104/168 (61%), Gaps = 8/168 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +VI+PD  L+++SR +   +  + +L+D+M E M + +G+GLAA+Q+GV  R ++I++
Sbjct: 3   REIVIYPDKRLKQISREVGSFDGALHDLLDDMYETMIARNGVGLAAIQVGVDLRALIINV 62

Query: 64  ----QDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
               ++  H   ++N +  INP I+   D    +QEGCLS+P    DV+R+  + V Y D
Sbjct: 63  PLEKEEGEHDQPKENTLEMINPVIVEM-DGKEKFQEGCLSVPGVYEDVERAKHVKVEYYD 121

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            N +  II  D  LA  +QHE+DHL+G +FI+ LS LKR    K+ +K
Sbjct: 122 RNGEKHIIEDDDFLAIAMQHEIDHLDGKVFIEKLSFLKRKKFEKEWAK 169


>gi|160872447|ref|ZP_02062579.1| peptide deformylase [Rickettsiella grylli]
 gi|159121246|gb|EDP46584.1| peptide deformylase [Rickettsiella grylli]
          Length = 168

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 103/165 (62%), Gaps = 3/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++  PD  LR  +  I   ++ +  LID+M E MY+  GIGLAA QI +  +L VID+ 
Sbjct: 5   PIIQLPDVRLRVPTTSITVFDATLQQLIDDMFETMYAAKGIGLAAPQIAISKKLAVIDVT 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           ++  + + +  INP I+    + ++ +EGCLS+P       R+ ++ ++ +D N +   I
Sbjct: 65  NN--KSHTLCLINPTIVEKKGE-ALLEEGCLSVPGIYDKAPRALWVKLQALDRNGKPYEI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            A+GLLA C+QHE+DHLNG LF+DHLS LK+ +  KK+ K+ + R
Sbjct: 122 EAEGLLAHCIQHEVDHLNGKLFLDHLSPLKQQLARKKLDKIKKRR 166


>gi|15644409|ref|NP_229461.1| peptide deformylase [Thermotoga maritima MSB8]
 gi|3023626|sp|P96113|DEF_THEMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|4982236|gb|AAD36728.1|AE001808_3 polypeptide deformylase [Thermotoga maritima MSB8]
 gi|1772608|emb|CAA71356.1| polypeptide deformylase [Thermotoga maritima]
          Length = 164

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 5/155 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D+ +  
Sbjct: 6   VFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-- 63

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               P+  INP+I+    +  V +EGCLS P+   +++RS  I V+Y +   ++     +
Sbjct: 64  ---GPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELE 120

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           G  A   QHE DHLNG+L ID +S  KR ++ KK+
Sbjct: 121 GYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKL 155


>gi|317011008|gb|ADU84755.1| peptide deformylase [Helicobacter pylori SouthAfrica7]
          Length = 174

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---QD 65
           +P  ILR +S+ +   +  +   +D+M E M +++GIGLAA+Q+G+  R+++I+L    D
Sbjct: 9   YPSKILRTISKEVVSFDEKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPREDD 68

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  LQHKEDCLEIINPKWIETKGSL-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASALLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|292670259|ref|ZP_06603685.1| peptide deformylase [Selenomonas noxia ATCC 43541]
 gi|292648211|gb|EFF66183.1| peptide deformylase [Selenomonas noxia ATCC 43541]
          Length = 156

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 90/138 (65%), Gaps = 4/138 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +P+L++ + PIE++      ++D+M E MY+ +G+GLAA QIG   RLVVID++D     
Sbjct: 11  NPVLKQKAEPIERLTKRHRQMLDDMAETMYAANGVGLAAPQIGKSLRLVVIDVEDE---H 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  +NP +IT  +   V  EGCLSIP    DV+R+  +TV Y D  ++ + + ADGLL
Sbjct: 68  GLLELVNP-VITMREGSVVDSEGCLSIPKVYGDVERAERVTVEYTDRRSRRRTLTADGLL 126

Query: 131 ATCLQHELDHLNGILFID 148
           A C+QHE DHL+G LFID
Sbjct: 127 ARCIQHECDHLDGRLFID 144


>gi|166364192|ref|YP_001656465.1| peptide deformylase [Microcystis aeruginosa NIES-843]
 gi|159030946|emb|CAO88636.1| def [Microcystis aeruginosa PCC 7806]
 gi|166086565|dbj|BAG01273.1| polypeptide deformylase [Microcystis aeruginosa NIES-843]
          Length = 191

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 90/140 (64%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I K++  I  L   ML+ MYS++GIGLAA Q+ V  +L+VID +      
Sbjct: 24  DRVLRQPAKRIAKVDDSIRQLAREMLQTMYSSNGIGLAAPQVAVNKQLIVIDCEHDKPEN 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+II +S +    +EGCLSIPD   DV R   I V Y D   + + + A+GLL
Sbjct: 84  PPLILINPQIIGYSRELCKAEEGCLSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLL 143

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A  +QHE+DHLNG++F+D +
Sbjct: 144 ARVIQHEMDHLNGVMFVDRV 163


>gi|291612480|ref|YP_003522637.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
 gi|291582592|gb|ADE10250.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
          Length = 167

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 3/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PD  L +V++ +E+IN     L+ +M E MY+  GIGLAA Q+    RL+VID+ 
Sbjct: 5   PIIQYPDERLHKVAKKVEQINEATRKLVRDMAETMYAAPGIGLAATQVDKHIRLIVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +     +  VFINP+++    D    +EGCLS+P     V R+ F+TV  +D + +   +
Sbjct: 65  ET--HDDLKVFINPELVDSMGDKE-NEEGCLSVPGIYEKVTRAEFVTVNALDEHGKPFTL 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLA C+QHE+DHL G +F++ LS LK+  I  K+ K
Sbjct: 122 NAEGLLAVCIQHEMDHLQGRVFVEKLSHLKQTRIRAKLKK 161


>gi|257784671|ref|YP_003179888.1| peptide deformylase [Atopobium parvulum DSM 20469]
 gi|257473178|gb|ACV51297.1| peptide deformylase [Atopobium parvulum DSM 20469]
          Length = 180

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 1/151 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PDP L +    I+ IN D+  + ++ML+VMY+TDG+GLA  QIG + R+VVID+  
Sbjct: 8   MVLWPDPRLSQKCEEIDDINDDVRKMAEHMLKVMYATDGVGLAGPQIGYMKRMVVIDVDY 67

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++NP V INP+I     +  VY+EGCLS P     V R + + V   + +       
Sbjct: 68  PNGQENPFVLINPEIKVADGEPRVYEEGCLSFPGITVPVTRPSHVVVHAYNLDGDLMRYE 127

Query: 126 ADG-LLATCLQHELDHLNGILFIDHLSRLKR 155
           A+G L A CLQHE+DH+NG+   DHL    R
Sbjct: 128 AEGDLFAVCLQHEIDHINGVTMPDHLGPGAR 158


>gi|226313317|ref|YP_002773211.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
 gi|226096265|dbj|BAH44707.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
          Length = 158

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 91/148 (61%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDPILR  +  + K NS++  L+D+M + MY  DG+GLAA Q+G+  R++V
Sbjct: 1   MAIRTIVKHPDPILREKAMVVTKFNSNLHKLLDDMADTMYDADGVGLAAPQVGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D       +  INP+II    +   Y EGCLSIP  + DV+R  +I +R  D N  
Sbjct: 61  MDCGD-----GLIEMINPEIIEHEGEQYDYPEGCLSIPGLQGDVRRHKWIKLRGHDRNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              + AD LL+ C QHE+DHLNG+LFID
Sbjct: 116 VVELEADDLLSRCAQHEIDHLNGVLFID 143


>gi|159902617|ref|YP_001549961.1| peptide deformylase [Prochlorococcus marinus str. MIT 9211]
 gi|159887793|gb|ABX08007.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 201

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 89/138 (64%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR+ ++ + K+++ I  LI  ML  MYS  GIGLAA Q+G+  +L+VIDL        P+
Sbjct: 41  LRQTAQRVSKVDNSIRTLIKKMLHSMYSAKGIGLAAPQVGIHKQLLVIDLDIENSTTPPI 100

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V INP+I  FS     Y+EGCLSIP    +V R + I + + D   + + + ADGLL+ C
Sbjct: 101 VLINPQITDFSAAIETYEEGCLSIPGVYLNVIRPSSIKLNFRDEMGRPKKMNADGLLSRC 160

Query: 134 LQHELDHLNGILFIDHLS 151
           +QHE+DHLNG+LF+D ++
Sbjct: 161 IQHEMDHLNGVLFVDRVT 178


>gi|309389021|gb|ADO76901.1| peptide deformylase [Halanaerobium praevalens DSM 2228]
          Length = 150

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 93/143 (65%), Gaps = 5/143 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR  ++ I+++N     LIDNM E MY+ DG+GLAA QIG+L R+ V+D+++     
Sbjct: 11  DPVLRTKAKEIDEVNKKTNELIDNMFETMYAEDGVGLAAPQIGMLKRIAVVDIREG---- 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           N ++ INP+II   +  ++ +EGCLSIP    DV R+  I V+ ++   +     A+G  
Sbjct: 67  NKVILINPEIIE-KEGKAIMEEGCLSIPGETGDVIRAEKIKVKSLNRKGKEVTFLAEGFE 125

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  +QHE+DHL+GILF+D + ++
Sbjct: 126 ARAIQHEIDHLDGILFVDKIIKI 148


>gi|315637680|ref|ZP_07892885.1| peptide deformylase [Arcobacter butzleri JV22]
 gi|315478027|gb|EFU68755.1| peptide deformylase [Arcobacter butzleri JV22]
          Length = 171

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 104/164 (63%), Gaps = 4/164 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +P+ +LR  S+ +EK +S++  L+D+M E M + +G+GLAA+Q+ V   ++VI+L
Sbjct: 3   REVITYPNKLLRLKSKDVEKFDSELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVINL 62

Query: 64  --QDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             ++    KN ++  INP +IT  D   V+ EGCLS+P +  DV R+  I V Y +   +
Sbjct: 63  PNEEDVQDKNDLIEAINP-VITHKDGTQVFTEGCLSVPGFSEDVTRAEHIVVEYFNRFGE 121

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q + ++G LA   QHE++HL+G LFI++LS +KR    K+  K
Sbjct: 122 KQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKK 165


>gi|332709623|ref|ZP_08429583.1| peptide deformylase [Lyngbya majuscula 3L]
 gi|332351656|gb|EGJ31236.1| peptide deformylase [Lyngbya majuscula 3L]
          Length = 187

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 93/149 (62%), Gaps = 2/149 (1%)

Query: 5   PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL I    D +LR+ ++ + K++ +I  L + ML+ MYS DGIGLAA Q+G+  +++V+D
Sbjct: 16  PLTIHYLGDRVLRQPAKRVAKVDQNIRKLAEQMLQTMYSADGIGLAAPQVGINKQMIVVD 75

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            + +     P+V INP+I +F       QEGCLSIP    DV R   I V Y D N + +
Sbjct: 76  CEPNNQDNQPLVLINPEIKSFGSTPCDGQEGCLSIPGVYLDVTRPDEIEVAYKDQNGRPR 135

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            + A+GLL+  +QHE+DHL G++F+D + 
Sbjct: 136 TLKANGLLSRVIQHEIDHLKGVMFVDRVQ 164


>gi|288574972|ref|ZP_06393329.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570713|gb|EFC92270.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 164

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 6/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I+PDP+LR  ++ IE+ + +  + ++ M  +MY  DG+GLAA Q+G   ++ V
Sbjct: 1   MSDRTIRIYPDPVLREPTKEIERFDDNFKSFLEEMESLMYEYDGVGLAAPQVGESLKVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I  +   H     V INP+I+ + D   V QEGCLS P    DV R A + V   D N +
Sbjct: 61  IAYEGKLH-----VLINPRIVDY-DGRQVDQEGCLSFPGIFEDVARPASVVVEAQDENGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A+G LA  + HE+DHLNG L IDHLS +KR+M+
Sbjct: 115 PYSIEAEGFLARAMCHEIDHLNGKLMIDHLSPMKREMV 152


>gi|254526876|ref|ZP_05138928.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
 gi|221538300|gb|EEE40753.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
          Length = 201

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 98/161 (60%), Gaps = 5/161 (3%)

Query: 5   PLVIFP--DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL I+      LR  ++ I K++ DI  L   ML+ MYS  GIGLAA Q+G+   L+VID
Sbjct: 30  PLEIYKLGSKALRTTAKRISKVDIDIRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVID 89

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +        P++ INP+I  +    + Y+EGCLSIP    +V R + I +++ D   + +
Sbjct: 90  INFEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPR 149

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR---LKRDMITK 160
            + ADGLLA C+QHE+DHL G+LF+D ++    LK+++I +
Sbjct: 150 KMNADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELIKE 190


>gi|302338169|ref|YP_003803375.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
 gi|301635354|gb|ADK80781.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
          Length = 161

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 4/159 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++   + +LR  +  + +++  I  L D+M+  M+  DG+GLAA QIGVL RL V     
Sbjct: 3   ILTLGNELLRERTATVAEVDESIRRLADDMIVTMHEDDGVGLAAPQIGVLKRLFVC---- 58

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           H     P VFINP+II  S +   Y+EGCLSIP   ADV R   I V+ +D N +   + 
Sbjct: 59  HVRGDVPRVFINPEIIGTSQEQVRYEEGCLSIPGIYADVLRPESIQVQAIDENGKAFKLA 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A+GLLA  +QHE+DHL G+LFIDHL   KR  + K   K
Sbjct: 119 AEGLLARVIQHEMDHLKGVLFIDHLEERKRRRLLKLYEK 157


>gi|312890426|ref|ZP_07749963.1| peptide deformylase [Mucilaginibacter paludis DSM 18603]
 gi|311297196|gb|EFQ74328.1| peptide deformylase [Mucilaginibacter paludis DSM 18603]
          Length = 190

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 6/168 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +K P++ + DP+LRR +  IE      I  L++NM E MY+  G+GLAA Q+G+  RL V
Sbjct: 1   MKYPIIAYGDPVLRRAATNIEPDEYPHIKELVENMFETMYAARGVGLAAPQVGLSMRLFV 60

Query: 61  IDLQ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID      D    K+   VFIN K++  + +   + EGCLSIPD R DV R   + + Y 
Sbjct: 61  IDATPFDDDEPELKDFKKVFINAKVLEETGEEWSFNEGCLSIPDIREDVYRKPVVRLSYY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           D N +H      GL A  +QHE DH+ G LF D LS L++ +I KK++
Sbjct: 121 DENWKHHEETFKGLAARVIQHEYDHIEGKLFTDKLSPLRKRLIQKKLT 168


>gi|225010669|ref|ZP_03701139.1| peptide deformylase [Flavobacteria bacterium MS024-3C]
 gi|225005222|gb|EEG43174.1| peptide deformylase [Flavobacteria bacterium MS024-3C]
          Length = 196

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 98/175 (56%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+V + DP+L++V+  I   + ++ +LI+NM E MY   G+GLAA QIG+  RL VID  
Sbjct: 4   PIVAYGDPVLKKVANAIAADHPNLESLIENMWETMYHAHGVGLAAPQIGLPIRLFVIDAT 63

Query: 64  -----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                      +  A +    VFIN  I   + +   + EGCLSIPD R DV R   IT+
Sbjct: 64  PFADDEDLTQSEQDALKNFKAVFINATITEETGEEWTFNEGCLSIPDVREDVIRKPKITI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y D   +      DGL+A  +QHE DH+ GILF D LS LK+ ++  ++S + +
Sbjct: 124 TYQDETFKTHTKTFDGLVARVIQHEYDHIEGILFTDKLSSLKKRILKGRLSNISK 178


>gi|160896282|ref|YP_001561864.1| peptide deformylase [Delftia acidovorans SPH-1]
 gi|160361866|gb|ABX33479.1| peptide deformylase [Delftia acidovorans SPH-1]
 gi|162662271|gb|EDQ49167.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 170

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L  V++P+ K++  I  L+ +M   MY   G+GLAA Q+ V  R+VV+D+ 
Sbjct: 5   PILCYPDPRLHTVAKPVAKVDDRIRQLVQDMYATMYDAQGVGLAATQVNVHERVVVVDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P   INP+++  S++  + +EGCLS+P     V+RS  I V+ +D N   +II
Sbjct: 65  EG--RDEPFALINPELLWASEETQLGEEGCLSVPGIYDGVERSTAIKVKALDENGNERII 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+G  A C+QHE+DHL G +F+++LS LKR+ I  K+ K
Sbjct: 123 EAEGFKAICIQHEMDHLMGKVFVEYLSPLKRNRIKTKLLK 162


>gi|182677516|ref|YP_001831662.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633399|gb|ACB94173.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 165

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 100/169 (59%), Gaps = 4/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FPDP L   ++ +E  +  +  L D+++E +++  GIG+ A  IGV  RLV 
Sbjct: 1   MAVRPVIRFPDPRLSMAAQKVEHFDETLRTLADDLVESLHAAHGIGITAPHIGVPARLVA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L  +  R    +++NP+II  SD    +QEG +S+P     V+R A I VRY D +  
Sbjct: 61  LELTPNQTR----LYVNPEIIWSSDTKIRHQEGSVSMPGVTEIVERCAEIHVRYQDLDGS 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             I  ADG LA C QHE+D L+G+ +I  LSRLKR+ + K+  KL   R
Sbjct: 117 VHIEKADGFLAICHQHEIDQLDGLFWIQRLSRLKRERVIKRYEKLASDR 165


>gi|34558486|ref|NP_908301.1| peptide deformylase [Wolinella succinogenes DSM 1740]
 gi|39930815|sp|Q7M7M2|DEF_WOLSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34481780|emb|CAE11201.1| POLYPEPTIDE DEFORMYLASE PDF FORMYLMETHIONINEDEFORMYLASE [Wolinella
           succinogenes]
          Length = 170

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 99/163 (60%), Gaps = 4/163 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +P P+L++ S P+   + ++   +D M   M + +G+GLAAVQ+G   R +++++ 
Sbjct: 3   PIITYPHPLLKKRSEPVTLFDEELRQFLDEMYITMLAKNGVGLAAVQVGNPIRALIVNIP 62

Query: 65  D---HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D   +  R+N +  INP+ ++   +   + EGCLS+P++  DV R   + + Y D   + 
Sbjct: 63  DEEGNQERENLLEIINPEFLSKEGEIQ-FNEGCLSVPEFYEDVTRFDRVRLTYQDRYGER 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I A+G LA  LQHE+DHLNGILFID LS +KR    K++ K
Sbjct: 122 HEIEAEGYLAVALQHEIDHLNGILFIDKLSLIKRKKFEKELKK 164


>gi|318040515|ref|ZP_07972471.1| peptide deformylase [Synechococcus sp. CB0101]
          Length = 200

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 90/141 (63%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR  ++ I K++  I +L  +ML  MY+  GIGLAA QIG   +L+VIDL+    + 
Sbjct: 37  DQVLRTPAKRIGKVDDSIRSLARDMLVSMYAAKGIGLAAPQIGEPLQLLVIDLEIEDPKS 96

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+I +       Y+EGCLSIP    DV R + + V Y D   + + + ADGL+
Sbjct: 97  PPLILINPEITSVGGSLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDEMGRPKRLKADGLM 156

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A C+QHE+DHLNG+LF+D ++
Sbjct: 157 ARCIQHEMDHLNGVLFVDRVT 177


>gi|86610195|ref|YP_478957.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558737|gb|ABD03694.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 196

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 89/141 (63%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I ++N +I  L  +ML+ MYS DGIGLAA Q+G+  R++V+DL       
Sbjct: 26  DKVLRQPAKRISQVNDEIRQLARDMLQTMYSFDGIGLAAPQVGIPKRMIVVDLYPDKPEV 85

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I  +  +    QEGCLSIP    +V R   I V + D   + + + AD LL
Sbjct: 86  PPLVLINPEIREYIGEAVAGQEGCLSIPGVFCEVMRPEGIVVSFKDETGRPRTLRADDLL 145

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  +QHE+DHLNG+LF+DH+ 
Sbjct: 146 ARVIQHEIDHLNGVLFVDHVE 166


>gi|308062113|gb|ADO04001.1| peptide deformylase [Helicobacter pylori Cuz20]
          Length = 175

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +DNM E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDNMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|85375926|gb|ABC70185.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             HR++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHREDCLEIINPKWIETGGSI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|260778893|ref|ZP_05887785.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605057|gb|EEX31352.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 168

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 105/163 (64%), Gaps = 5/163 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQ 64
           ++  PDP L+  +  +  I S +  LID+MLE +Y+T +GIGLAA Q+G    +V+IDL 
Sbjct: 6   ILTAPDPKLKIKAEKVSDIQS-VQTLIDDMLETLYATSNGIGLAATQVGHREAIVIIDLS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P++ +NP+++    + ++ QEGCLS+PDY ADV+R   + V  +D + +   I
Sbjct: 65  ES--RDQPLILVNPEVVE-GKNRAMGQEGCLSVPDYYADVERYTSVVVEALDRHGEPVRI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +D  LA  +QHE+DHL G LFID+LS LK+ M  KK+ K ++
Sbjct: 122 ESDDFLAIVMQHEIDHLAGNLFIDYLSPLKQRMALKKVKKHIK 164


>gi|301632277|ref|XP_002945217.1| PREDICTED: peptide deformylase 1-like [Xenopus (Silurana)
           tropicalis]
          Length = 217

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 89/138 (64%), Gaps = 2/138 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +V++P+  +++ I +L+ +ML  MY   GIGLAA Q+ V  R+VVID  
Sbjct: 5   PILCYPDPRLHQVAQPVRAVDARIQSLVSDMLATMYDAQGIGLAATQVDVHERVVVIDTS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R  P+V INP+I+  S +  V  EGCLS+P     V+R + + VR +D     ++I
Sbjct: 65  EE--RNQPLVLINPEIVWASAEKVVRDEGCLSVPGIYDGVERCSAVHVRALDEKGAARVI 122

Query: 125 YADGLLATCLQHELDHLN 142
            A+GLLA C+QHE+DHL 
Sbjct: 123 QAEGLLAVCMQHEMDHLT 140


>gi|170288957|ref|YP_001739195.1| peptide deformylase [Thermotoga sp. RQ2]
 gi|281412566|ref|YP_003346645.1| peptide deformylase [Thermotoga naphthophila RKU-10]
 gi|238688844|sp|B1LB14|DEF_THESQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|170176460|gb|ACB09512.1| peptide deformylase [Thermotoga sp. RQ2]
 gi|281373669|gb|ADA67231.1| peptide deformylase [Thermotoga naphthophila RKU-10]
          Length = 164

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 5/155 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D+ +  
Sbjct: 6   VFGDPVLRKRAKPVTKFDDNLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-- 63

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               P+  INP+I+    +  V +EGCLS P+   +++RS  I V+Y +   ++     +
Sbjct: 64  ---GPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELE 120

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           G  A   QHE DHLNG+L ID +S  KR ++ KK+
Sbjct: 121 GYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKL 155


>gi|225012717|ref|ZP_03703152.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
 gi|225003250|gb|EEG41225.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
          Length = 195

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 97/173 (56%), Gaps = 12/173 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P+V +  P+L++ +  I +   ++  LI+NM E MY+++G+GLAA QIG+  RL VID  
Sbjct: 4   PIVAYGAPVLKKEAAEISEEYPNLDQLIENMWETMYASNGVGLAAPQIGLSIRLFVIDTA 63

Query: 63  ----------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                     L+    +    VFINP +I        + EGCLSIPD R DV R   I +
Sbjct: 64  PFSEDDELDELEAETLKSFKKVFINPVVIEEDGSLWEFNEGCLSIPDVREDVSRHERIKI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Y D   + Q +   GL A  +QHE DH+ G+LF DHL+ LKR ++  +++ +
Sbjct: 124 HYFDQQFKEQELVLTGLAARVVQHEYDHIEGVLFTDHLTPLKRRLLKNRLNSI 176


>gi|86142250|ref|ZP_01060760.1| peptide deformylase [Leeuwenhoekiella blandensis MED217]
 gi|85831002|gb|EAQ49459.1| peptide deformylase [Leeuwenhoekiella blandensis MED217]
          Length = 196

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P+V + DP+LR+ +  I +   ++  L+ NM E MY   G+GLAA QIG   RL V+D  
Sbjct: 4   PIVAYGDPVLRKKAVEIPQDYPELKELVANMFETMYGASGVGLAAPQIGKAIRLFVVDAT 63

Query: 63  -------LQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  L D      R     FINP+I+  + D   + EGCLSIP    DV R   I +
Sbjct: 64  PFADDEDLSDEEQERLRTFKKAFINPQILEETGDEWAFSEGCLSIPGINEDVFRCPIIKI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +Y D +    +   DGLLA  +QHE DH+ GILF D LS LK+ +I  K++ + +
Sbjct: 124 KYQDEDFNEHVEEFDGLLARVIQHEYDHIEGILFTDKLSSLKKRIIKSKLAGISK 178


>gi|322421200|ref|YP_004200423.1| peptide deformylase [Geobacter sp. M18]
 gi|320127587|gb|ADW15147.1| peptide deformylase [Geobacter sp. M18]
          Length = 171

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 108/167 (64%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV+K ++ +PDP L++ S P+  I      L+ +M E MY   G+GLAA QIGV  R++V
Sbjct: 1   MVRK-ILTYPDPELKKRSLPVTVITDKTRELVRDMAETMYDAPGVGLAAPQIGVHQRIIV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     +   +V INP+II  ++  +  +EGCLS+P + A+V+R A + V+ ++ + +
Sbjct: 60  IDVSCKDEKPELIVAINPEII-HAEGEAYEEEGCLSVPKFSANVRRHAKVVVKSLNLDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             +I AD LLA   QHE+DHL+G+LFIDHLS LK+ +  K+  + ++
Sbjct: 119 EVVIRADDLLAIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQRALE 165


>gi|149194678|ref|ZP_01871773.1| peptide deformylase [Caminibacter mediatlanticus TB-2]
 gi|149135101|gb|EDM23582.1| peptide deformylase [Caminibacter mediatlanticus TB-2]
          Length = 173

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 100/153 (65%), Gaps = 4/153 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ IL+++S+P+E+ +S++  L+D+M E M + +GIGLAA+Q+GV  R ++IDL D
Sbjct: 6   IVTYPNKILKQISKPVERFDSELHKLLDDMYETMIAKNGIGLAAIQVGVPIRALLIDLGD 65

Query: 66  HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              +++    +  INP+ + +      Y EGCLS+PDY  +V+R   + V++ D   +  
Sbjct: 66  EEGKQSKDTLIEVINPEFLEWDGSLK-YNEGCLSVPDYFDEVERYKKVKVKFFDRFGKEH 124

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           I+ A+ LL+   QHE DHL+G +FI+ L  +KR
Sbjct: 125 IVDAEDLLSVAFQHETDHLDGHVFIERLDYIKR 157


>gi|269123156|ref|YP_003305733.1| peptide deformylase [Streptobacillus moniliformis DSM 12112]
 gi|268314482|gb|ACZ00856.1| peptide deformylase [Streptobacillus moniliformis DSM 12112]
          Length = 169

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+K  + ++  PILR+ S  + + N ++ N +D M++ M   +GIGLAA Q+G+  R  V
Sbjct: 1   MIKLNIYVYEAPILRKKSEEVVEFNDELRNTLDEMVKTMRLANGIGLAANQVGIGKRFFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ D   +      +NP+I++F ++   +QEGCLSIP    +V R   I VRY D N  
Sbjct: 61  LEIDDEITK-----VVNPEILSFGEEMVEFQEGCLSIPGIFKNVLRPESIVVRYQDENGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                 +GL +   QHELDH++GILFID +S + R++I KK+ 
Sbjct: 116 FVERELNGLKSRAFQHELDHIDGILFIDKISPMSRNLIRKKLE 158


>gi|210134993|ref|YP_002301432.1| peptide deformylase [Helicobacter pylori P12]
 gi|238058211|sp|B6JM24|DEF_HELP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|210132961|gb|ACJ07952.1| polypeptide deformylase [Helicobacter pylori P12]
          Length = 174

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  VQHKEDCLEIINPKWIETKGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|254457336|ref|ZP_05070764.1| peptide deformylase [Campylobacterales bacterium GD 1]
 gi|207086128|gb|EDZ63412.1| peptide deformylase [Campylobacterales bacterium GD 1]
          Length = 174

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 103/163 (63%), Gaps = 4/163 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PD IL+++S  +EK + ++ +L+D M  +M  T+GIGLAA+Q+    +++++++ +
Sbjct: 5   IVEYPDKILKQISEKVEKFDKELHDLLDAMYPIMVKTNGIGLAAIQVARPKQVLILNIPE 64

Query: 66  HAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               +   N +  +NP II   D   VYQEGCLS+P +  D+ R   ITV Y D +A  +
Sbjct: 65  EDGEQPIENLIEMVNP-IIVKKDGEIVYQEGCLSVPSFYEDIIRFENITVNYQDRDANTK 123

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            + A+GLL+  +QHE+DHL GILFID LS  +R    K+  ++
Sbjct: 124 TLEANGLLSVAIQHEIDHLKGILFIDKLSYARRKKFEKEYKRM 166


>gi|209515834|ref|ZP_03264696.1| peptide deformylase [Burkholderia sp. H160]
 gi|209503682|gb|EEA03676.1| peptide deformylase [Burkholderia sp. H160]
          Length = 167

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 99/159 (62%), Gaps = 2/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +V++P+ ++N  I  L+ +M E MY+  G+GLAA Q+ V  R++VID+ +   
Sbjct: 9   YPDKRLHKVAKPVTEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIVIDVSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +  INP+I+  SD+    +EGCLS+P    +V+R+  + VR ++   +   +  +G
Sbjct: 67  HDELLALINPEIVWSSDERKFSEEGCLSVPGIYDNVERAEKVRVRALNEKGETFELDCEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA C+QHE+DHL G +F+++LS LK+  I  KM KL  
Sbjct: 127 LLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLAH 165


>gi|270692640|ref|ZP_06222945.1| peptide deformylase [Haemophilus influenzae HK1212]
 gi|270316024|gb|EFA28060.1| peptide deformylase [Haemophilus influenzae HK1212]
          Length = 132

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/130 (48%), Positives = 89/130 (68%), Gaps = 3/130 (2%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M + MY   GIGLAA Q+ +L R++ ID++    ++N  V INP+I+  S+  +  +EGC
Sbjct: 1   MFDTMYQEKGIGLAAPQVDILQRIITIDVE--GDKQNQFVLINPEILA-SEGETGIEEGC 57

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           LSIP +RA V R   +TVR +D + +   + ADGLLA C+QHE+DHLNGILF+D+LS LK
Sbjct: 58  LSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 117

Query: 155 RDMITKKMSK 164
           R  I +K+ K
Sbjct: 118 RQRIKEKLLK 127


>gi|126733795|ref|ZP_01749542.1| formylmethionine deformylase [Roseobacter sp. CCS2]
 gi|126716661|gb|EBA13525.1| formylmethionine deformylase [Roseobacter sp. CCS2]
          Length = 166

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P V++P P LR  + P+  I  ++  + D M+  M +  G+GLAA Q+GV   L V
Sbjct: 1   MTHRPFVMWPHPALRTAATPVAVITDEVRAIWDEMIVAMDTMPGVGLAAPQLGVEMALAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R   +   NP I+  S +  V++EG  ++P   A V R   +TVR+++ + Q
Sbjct: 61  IDASEE--RGQAIRMANPTILHSSVEPRVHEEGSPNLPGVWAKVTRPRAVTVRFLNADGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  GL AT +QH++DHL+G +F DHL+R+KRDM+ KK +KL
Sbjct: 119 WDRQDFVGLWATSVQHQIDHLSGKMFFDHLTRVKRDMLIKKSAKL 163


>gi|42527153|ref|NP_972251.1| polypeptide deformylase [Treponema denticola ATCC 35405]
 gi|41817577|gb|AAS12162.1| polypeptide deformylase [Treponema denticola ATCC 35405]
 gi|325474196|gb|EGC77384.1| polypeptide deformylase [Treponema denticola F0402]
          Length = 169

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 93/145 (64%), Gaps = 5/145 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +  LR VS+P+EKI+ +I +LID M   +   +GIGLAA Q+G   RL ++ + +  +  
Sbjct: 8   EETLREVSKPVEKIDENIKSLIDEMFVTVKKENGIGLAAPQVGENIRLFIVFINEQKY-- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              VFINP+II  S +  + +EGCLSIP    +V R + + V++++ + + + I A GLL
Sbjct: 66  ---VFINPEIIETSQEMCLMEEGCLSIPKVYDEVMRPSAVKVQFLNIDGKIKTIEASGLL 122

Query: 131 ATCLQHELDHLNGILFIDHLSRLKR 155
           A  +QHE DHLNGILFID LS  K+
Sbjct: 123 ARVIQHENDHLNGILFIDRLSEEKK 147


>gi|119510121|ref|ZP_01629260.1| peptide deformylase [Nodularia spumigena CCY9414]
 gi|119465182|gb|EAW46080.1| peptide deformylase [Nodularia spumigena CCY9414]
          Length = 187

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 88/141 (62%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I K++ +I  L   ML+ MYS+DGIGLAA Q+G+  +L+VID +      
Sbjct: 24  DRVLRQDAKRIAKVDDEIRQLAREMLQTMYSSDGIGLAAPQVGIHKQLIVIDCEPDNPDH 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP I   S +  V QEGCLSIP    DVKR   + + Y D   + + + A  LL
Sbjct: 84  PPLVLINPTIKQMSKEVCVAQEGCLSIPKVYLDVKRPEAVEIAYKDEYGRPKTLKATDLL 143

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A C+QHE+DHL G++F+D + 
Sbjct: 144 ARCIQHEMDHLKGVVFVDRVE 164


>gi|113955292|ref|YP_731667.1| peptide deformylase [Synechococcus sp. CC9311]
 gi|122945537|sp|Q0I7A5|DEF_SYNS3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|113882643|gb|ABI47601.1| peptide deformylase [Synechococcus sp. CC9311]
          Length = 202

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 92/156 (58%), Gaps = 7/156 (4%)

Query: 3   KKPLVIFP-------DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           K+PL   P       D  LR  +R I K++  + +L  +ML  MY+  GIGLAA Q+GV 
Sbjct: 23  KEPLETAPLDIHTLGDDALRGDARRIGKVDERVRDLARDMLRSMYTASGIGLAAPQVGVH 82

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            +L+VIDL        P+V INP+I T S     Y+EGCLSIP    DV R   I + + 
Sbjct: 83  QQLLVIDLDFETPSTPPLVLINPEITTCSASVDTYEEGCLSIPGVYLDVVRPTAIQLSFR 142

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           D   + + + ADGL+A C+QHE+DHL G+LF+D ++
Sbjct: 143 DEMGRPRTMKADGLMARCIQHEMDHLRGVLFVDRVT 178


>gi|307637482|gb|ADN79932.1| Peptide deformylase [Helicobacter pylori 908]
 gi|325996072|gb|ADZ51477.1| Peptide deformylase [Helicobacter pylori 2018]
 gi|325997668|gb|ADZ49876.1| Peptide deformylase [Helicobacter pylori 2017]
          Length = 174

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  VQHKEDCLEIINPKWIETKGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|302392197|ref|YP_003828017.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
 gi|302204274|gb|ADL12952.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
          Length = 145

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 90/141 (63%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR  ++P++++      LI NM + MY   G+GLAA QIG+  R++V+D+ +     
Sbjct: 11  DPVLRTEAKPVDEVTEKTEGLIKNMQDTMYDASGVGLAAPQIGISKRVIVVDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+  INP+I+  S    + +EGCLSIP+   +V+R+A + V  +D + +   I A+GLL
Sbjct: 66  GPLALINPEIVESSGS-EIDEEGCLSIPNENGNVERAARVVVDALDSDGREVEIEAEGLL 124

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  LQHE+DHL GILF+D + 
Sbjct: 125 ARVLQHEIDHLEGILFVDKVE 145


>gi|300868003|ref|ZP_07112642.1| peptide deformylase [Oscillatoria sp. PCC 6506]
 gi|300334024|emb|CBN57820.1| peptide deformylase [Oscillatoria sp. PCC 6506]
          Length = 186

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 92/151 (60%), Gaps = 2/151 (1%)

Query: 3   KKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           K PL I    D  LR+ ++ +  ++++I  L+  ML+ MYS +GIGLAA Q+ V  +++V
Sbjct: 14  KPPLTIHTLGDRALRQPAKRVASVDAEIRQLVREMLQTMYSAEGIGLAAPQVAVQKQVIV 73

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D +       P+V INP I  +S +  V+QEGCLSIP    +VKR   I V Y D   +
Sbjct: 74  VDCEPDNAANPPLVLINPSIKKYSGEVCVFQEGCLSIPGVYLEVKRPEAIEVFYRDEYGR 133

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            Q + A  LL+  +QHE+DHLNG+LF+D + 
Sbjct: 134 PQTLKATELLSRAIQHEMDHLNGVLFVDRVE 164


>gi|85700147|gb|ABC74523.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNSFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|157412419|ref|YP_001483285.1| peptide deformylase [Prochlorococcus marinus str. MIT 9215]
 gi|157386994|gb|ABV49699.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 201

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 5/159 (3%)

Query: 5   PLVIFP--DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL I+      LR  ++ I K++ D   L   ML+ MYS  GIGLAA Q+G+   L+VID
Sbjct: 30  PLEIYKLGSKTLRTTAKRISKVDIDTRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVID 89

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +        P++ INP+I  +    + Y+EGCLSIP    +V R + I +++ D   + +
Sbjct: 90  INFEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPR 149

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR---LKRDMI 158
            + ADGLLA C+QHE+DHL G+LF+D ++    LK+++I
Sbjct: 150 KMNADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELI 188


>gi|85700133|gb|ABC74516.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKWIETGGSI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSVLKRKKFEKELKEL 167


>gi|15611796|ref|NP_223447.1| peptide deformylase [Helicobacter pylori J99]
 gi|8134402|sp|Q9ZL51|DEF_HELPJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|4155293|gb|AAD06310.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99]
          Length = 174

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  VQHKEDCLEIINPKWIETKGSI-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|170078943|ref|YP_001735581.1| peptide deformylase [Synechococcus sp. PCC 7002]
 gi|238689048|sp|B1XJP0|DEF_SYNP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169886612|gb|ACB00326.1| peptide deformylase [Synechococcus sp. PCC 7002]
          Length = 187

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 86/141 (60%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I K++ +I  L   ML+ MYS+ GIGLAA Q+GV  RL+VID        
Sbjct: 24  DKVLRQKAKRIAKVDDEIRTLAKEMLQTMYSSQGIGLAAPQVGVNKRLIVIDTDPENPAN 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I  F      ++EGCLSIP    DV R   I V Y D   + + I A GLL
Sbjct: 84  APLVLINPEIKKFGQQLCPFEEGCLSIPGVHLDVIRPDEIEVSYRDEQGKPKRIKASGLL 143

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           +  +QHE+DHL+G++F+D + 
Sbjct: 144 SRVIQHEIDHLDGVMFVDRVE 164


>gi|312884517|ref|ZP_07744221.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367829|gb|EFP95377.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 171

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 101/161 (62%), Gaps = 5/161 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDL 63
           P++  PDP L+  +  +   +  + + ID+ML+ +YST +GIGLAA Q+G    +VVIDL
Sbjct: 5   PILTTPDPRLKYEAEQVTDFDK-VQSFIDDMLDTLYSTANGIGLAATQVGRKEAVVVIDL 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +   R  P++ +NPK++    +  + QEGCLS+PDY ADV+R   + V+  D       
Sbjct: 64  SEA--RDQPLILVNPKVVC-GKNREMGQEGCLSVPDYYADVERFTSVVVQAQDRLGNAIK 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +D  LA  +QHE+DHL+G LFID+LS LKR M  KK+ K
Sbjct: 121 VESDDFLAIVMQHEIDHLSGRLFIDYLSPLKRQMALKKVKK 161


>gi|317014203|gb|ADU81639.1| peptide deformylase [Helicobacter pylori Gambia94/24]
          Length = 174

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  VQHKEDCLEIINPKWIETKGSI-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|193215216|ref|YP_001996415.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110]
 gi|193088693|gb|ACF13968.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110]
          Length = 202

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 99/154 (64%), Gaps = 5/154 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P+    +P+L +V++P++ +++++   I++M E MY+ DGIGLAA Q+G   RL+V+D  
Sbjct: 23  PVYTLGEPVLNKVAKPLKGVDAEMKQFIEDMFETMYNADGIGLAAPQVGKSLRLLVVDVS 82

Query: 63  -LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            ++D+   K P+V INP+I+  +   S  +EGCLS+P    +V R   IT++Y D +   
Sbjct: 83  VMEDYQDEK-PLVVINPQILE-TKGLSTMEEGCLSVPGVHEEVTRPKQITLKYRDADFVE 140

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           ++   DG++A  LQHE++HL G LFID+L    R
Sbjct: 141 RVEIYDGMMARVLQHEIEHLQGNLFIDNLDAKTR 174


>gi|49089809|gb|AAT51863.1| peptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|15645412|ref|NP_207586.1| peptide deformylase [Helicobacter pylori 26695]
 gi|3023623|sp|P56419|DEF_HELPY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2313922|gb|AAD07841.1| polypeptide deformylase (def) [Helicobacter pylori 26695]
          Length = 174

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|87301353|ref|ZP_01084194.1| peptide deformylase [Synechococcus sp. WH 5701]
 gi|87284321|gb|EAQ76274.1| peptide deformylase [Synechococcus sp. WH 5701]
          Length = 201

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 89/149 (59%), Gaps = 2/149 (1%)

Query: 5   PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL I    D +LR+ ++ I K++  +  L  NML  MYS  GIGLAA Q+GV  +++VID
Sbjct: 30  PLTIHRLGDQVLRQSAKRISKVDESVRELARNMLRSMYSAHGIGLAAPQVGVHKQVLVID 89

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           L        PMV +NP+I   S   + Y+EGCLSIP     V R +   V Y D   + +
Sbjct: 90  LDPENPATPPMVLVNPEINATSAALNTYEEGCLSIPGVYLSVVRPSEAEVSYRDEQGRPR 149

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            I ADGLLA C+ HE+DHL G+LF+D +S
Sbjct: 150 RIKADGLLARCILHEMDHLKGVLFVDLVS 178


>gi|282858813|ref|ZP_06267958.1| peptide deformylase [Prevotella bivia JCVIHMP010]
 gi|282588382|gb|EFB93542.1| peptide deformylase [Prevotella bivia JCVIHMP010]
          Length = 186

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 98/174 (56%), Gaps = 16/174 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+  +  P+LR+V++ I     D+  LI NM E   ++DG+GLAA QIG   R+VVIDL 
Sbjct: 4   PIYTYGQPVLRKVAQDIPTDYPDLQELIQNMFETCSASDGVGLAAPQIGKSIRVVVIDLD 63

Query: 64  ---------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113
                    +D+ H      FIN  I+ F D +  + +EGCLS+P     V+R+  + + 
Sbjct: 64  VMSDAFPEYKDYKH-----AFINGHILEFDDTETEIMEEGCLSLPGLHEKVERAKRVHIE 118

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           ++D N QH   + DG LA  +QHE DHL G +F D +S  ++ MI  KM  ++Q
Sbjct: 119 WLDENLQHHDEWVDGFLARVIQHEFDHLEGKVFTDRVSPFRKQMIKNKMKAMLQ 172


>gi|258593266|emb|CBE69605.1| Peptide deformylase (PDF) (Polypeptide deformylase) [NC10 bacterium
           'Dutch sediment']
          Length = 169

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 90/151 (59%), Gaps = 1/151 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++++P P++R+ S  +  IN ++   ID+M+E MY+  G+GLAA Q+G L R++V
Sbjct: 1   MAKLSILLYPSPVIRKKSVSVTSINGELQRFIDDMVETMYAAPGMGLAAPQVGALKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D      PM  INP ++       V +EGCL IPD    V R   + V+  D N +
Sbjct: 61  LDPSDDRTSHRPMALINPVLVAGEGQI-VDEEGCLCIPDLNEPVSRFKQVVVKAYDRNEK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I+    LLA  LQHE+DHL+GILFID LS
Sbjct: 120 EIILEGADLLARILQHEIDHLDGILFIDRLS 150


>gi|254445347|ref|ZP_05058823.1| peptide deformylase [Verrucomicrobiae bacterium DG1235]
 gi|198259655|gb|EDY83963.1| peptide deformylase [Verrucomicrobiae bacterium DG1235]
          Length = 191

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 17/178 (9%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64
           +V + + +L    +P+ K ++++  L +NM++ MY  +GIGLAA Q+G+     V+DL  
Sbjct: 5   IVQYGEKVLHETGKPVTKFDAELAELFENMVDTMYEAEGIGLAAQQVGLPLMFCVVDLNG 64

Query: 65  ---------DHAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
                    D A        PM   NPK+         Y+EGCLS P+ R DV+R+ +I 
Sbjct: 65  CDPDFDYTLDGAKPPFDLFMPMAIANPKVELIKSKELAYEEGCLSFPEIRGDVERTDWIR 124

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + D      +I A+GLL  C+QHE+DHLNGILFID   R+K+ ++ K   ++ QL+
Sbjct: 125 CEFQDLQGNPHVIEANGLLGRCIQHEVDHLNGILFID---RMKKRVLKKIQPQVNQLK 179


>gi|118137648|pdb|2EW5|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In
           Complex With Inhibitor
 gi|118137649|pdb|2EW6|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In
           Complex With Inhibitor
 gi|118137650|pdb|2EW7|A Chain A, Crystal Structure Of Helicobacter Pylori Peptide
           Deformylase
          Length = 181

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 8   YPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 67

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 68  VQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 126

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 127 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 166


>gi|222056880|ref|YP_002539242.1| peptide deformylase [Geobacter sp. FRC-32]
 gi|221566169|gb|ACM22141.1| peptide deformylase [Geobacter sp. FRC-32]
          Length = 168

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 107/169 (63%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + ++++P P+L+++  P+  I+ +I  L+ ++L+ M++  G +G+AA QIGV  R+ 
Sbjct: 1   MPGQKILLYPHPVLKKLCHPVGAIDGEIKGLLQDLLDCMHAGPGSVGVAAPQIGVTLRVC 60

Query: 60  VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+ +  + K+     +  INP +IT     ++ +EGC+S+PDY  DV+R+  ITVR+ 
Sbjct: 61  VVDVSNSRNGKDNNHGLLQLINP-VITERSGAAIMREGCMSVPDYTGDVERATEITVRFT 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N   + + A G  A  +QHE+DHL+G+LF+D ++ LK  +  +K  K
Sbjct: 120 DGNGIEREVKASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKNYK 168


>gi|261839392|gb|ACX99157.1| peptide deformylase [Helicobacter pylori 52]
          Length = 175

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ I   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEIVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|188527363|ref|YP_001910050.1| peptide deformylase [Helicobacter pylori Shi470]
 gi|238691921|sp|B2UT38|DEF_HELPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188143603|gb|ACD48020.1| peptide deformylase [Helicobacter pylori Shi470]
          Length = 175

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ I   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEIVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|300854442|ref|YP_003779426.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM
           13528]
 gi|300434557|gb|ADK14324.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM
           13528]
          Length = 152

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 8/152 (5%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D ILR+ SR +E+IN  I  L+D+M E +Y  DG+GLAA Q+GVL R++VID+ +   
Sbjct: 9   YGDSILRKKSRKVEEINERIHVLLDDMEETLYEEDGVGLAAPQVGVLKRVIVIDVGE--- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +  +NP+I T+S+  +V  EGCLSIP    +V+R   + V+ ++   +  +I  + 
Sbjct: 66  --GILKLVNPEI-TYSEGKAVDIEGCLSIPGSEGEVERPKKVKVKALNEKGEEIVIEGED 122

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           LLA  L HE+DHLNGILFID +  +K+  +TK
Sbjct: 123 LLARALCHEIDHLNGILFIDKI--IKKGEVTK 152


>gi|85700129|gb|ABC74514.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKWIETGGSI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|224373737|ref|YP_002608109.1| peptide deformylase [Nautilia profundicola AmH]
 gi|254767597|sp|B9L6X1|DEF_NAUPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|223589661|gb|ACM93397.1| peptide deformylase [Nautilia profundicola AmH]
          Length = 174

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 101/160 (63%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +L+++S+P+E+ + D+  L+D+M E M   +G+GLAA+Q+ V  R ++ID+ D
Sbjct: 6   IVTYPNKVLKQISKPVERFDKDLHKLLDDMYETMIKNNGVGLAAIQVAVPIRALLIDIGD 65

Query: 66  HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              +++    +  INP+ +T+ D      EGCLS+PDY  +V+R   + V++ D   +  
Sbjct: 66  EEGKQSKDTLIEVINPEFLTW-DGTQKDTEGCLSVPDYFDEVERYKNVKVKFFDRFGKEH 124

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           ++ A+GLL+   QHE DHL+G LF++ L  +KR    K+ 
Sbjct: 125 VMEAEGLLSVAFQHETDHLDGHLFVERLDYIKRKKFEKEW 164


>gi|255262069|ref|ZP_05341411.1| peptide deformylase [Thalassiobium sp. R2A62]
 gi|255104404|gb|EET47078.1| peptide deformylase [Thalassiobium sp. R2A62]
          Length = 164

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 6/164 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +  V++PD  LR  +  + +I  DI  + D M+E M +  G+GLAAVQIGV  RL V+D 
Sbjct: 3   RSYVMWPDKRLRTAASDVAEITDDIRAIWDEMIEAMDAMPGVGLAAVQIGVPLRLAVVDA 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D   R   +   NP+I+  S +   +QE   ++P   A V R   +TV++MD N   ++
Sbjct: 63  SD--ARGQAIRMANPEILFASAEMRTHQEASPNLPGVSAIVGRPRAVTVQFMDANG--EL 118

Query: 124 IYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +  D  GL AT +QH++DHL G ++ DH+SR KRDM+ KK +KL
Sbjct: 119 VQRDLVGLWATSVQHQIDHLAGRMYFDHVSRTKRDMLIKKSAKL 162


>gi|4098215|gb|AAD09580.1| N-formylmethionylaminoacyl-tRNA deformylase [Helicobacter pylori]
          Length = 174

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKWIETGGSI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|317178847|dbj|BAJ56635.1| peptide deformylase [Helicobacter pylori F30]
          Length = 175

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|332673404|gb|AEE70221.1| peptide deformylase [Helicobacter pylori 83]
          Length = 174

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPKEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSI-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEMDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|317009197|gb|ADU79777.1| peptide deformylase [Helicobacter pylori India7]
          Length = 174

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 103/160 (64%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPKEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK+I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKLIEAGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|85700127|gb|ABC74513.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKWIGTGGSI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|255746035|ref|ZP_05419982.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262162126|ref|ZP_06031141.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
 gi|255735789|gb|EET91187.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262028201|gb|EEY46859.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
 gi|327485372|gb|AEA79778.1| Peptide deformylase [Vibrio cholerae LMA3894-4]
          Length = 145

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/145 (46%), Positives = 96/145 (66%), Gaps = 4/145 (2%)

Query: 26  SDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
           + +  LID++L+ +Y+TD GIGLAA Q+G    +VVIDL D+  R  P+V INPK+++ S
Sbjct: 2   ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLSDN--RDQPLVLINPKVVSGS 59

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
           +   + QEGCLS+PDY ADV+R   + V  +D   +   I     LA  +QHE+DHL+G 
Sbjct: 60  NK-EMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGN 118

Query: 145 LFIDHLSRLKRDMITKKMSKLVQLR 169
           LFID+LS LK+ M  KK+ K V+ R
Sbjct: 119 LFIDYLSPLKQQMAMKKVKKHVKNR 143


>gi|239617141|ref|YP_002940463.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1]
 gi|239505972|gb|ACR79459.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1]
          Length = 164

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 7/163 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V   +P+LR  S  I+K + ++   +  +  +MY  DG+GLAA Q+ VL R+ V D   
Sbjct: 3   IVYIGNPVLREKSEAIKKFDDNLKTFVKELTSIMYKEDGVGLAAPQVAVLKRMFVFD--- 59

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQII 124
                 P V INP+I+  S +  + +EGCLSIP   ADV+R  ++ +RY D +   H+ +
Sbjct: 60  --DGSGPKVIINPEILEKSKELVIMEEGCLSIPGVYADVERPEWVKMRYQDVDGNVHEEL 117

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + +G     +QHE DHLNGILFID+LS  K+ MI  K+ ++++
Sbjct: 118 F-EGYAGRIVQHEYDHLNGILFIDYLSPAKKMMIRPKLREIMK 159


>gi|85700135|gb|ABC74517.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAVQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|308182949|ref|YP_003927076.1| peptide deformylase [Helicobacter pylori PeCan4]
 gi|308065134|gb|ADO07026.1| peptide deformylase [Helicobacter pylori PeCan4]
          Length = 175

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGTI-IYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|254779233|ref|YP_003057338.1| peptide deformylase [Helicobacter pylori B38]
 gi|254001144|emb|CAX29102.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Helicobacter
           pylori B38]
          Length = 174

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|256823831|ref|YP_003147794.1| peptide deformylase [Kangiella koreensis DSM 16069]
 gi|256797370|gb|ACV28026.1| peptide deformylase [Kangiella koreensis DSM 16069]
          Length = 175

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 93/156 (59%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPDP LR  ++P+     ++   ID+M E MY+  GIGLAA Q+ +  +  VID+ D   
Sbjct: 9   FPDPRLRTKAKPVTDFGDELQQQIDSMFETMYAAPGIGLAATQVNIHKQFFVIDVSDD-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P+VFINP+I+         +EGCLS P   A V+R+  I V+ +D + +   +    
Sbjct: 67  KSEPLVFINPQIVE-KRGVEEMEEGCLSFPGVYAKVQRANEIVVKALDRHGKPFEMDTGE 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE DH+ G LF+D+LS LKR+ I K + K
Sbjct: 126 LLAVCIQHENDHIEGKLFVDYLSPLKRNRIRKMLEK 161


>gi|33863868|ref|NP_895428.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313]
 gi|124022020|ref|YP_001016327.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303]
 gi|39930996|sp|Q7V5F9|DEF2_PROMM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|33635451|emb|CAE21776.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9313]
 gi|123962306|gb|ABM77062.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 201

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 91/139 (65%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +LR+ +R I K++  + +L+ +ML  MY+  GIGLAA Q+G+  +L+V+DL        P
Sbjct: 40  VLRQSTRRIGKVDESVRDLVRDMLRSMYAAKGIGLAAPQVGIHKQLLVLDLDLETPTTPP 99

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +V INP+II+ S     Y+EGCLSIP    +V R + I + + D   + + + ADGL+A 
Sbjct: 100 VVLINPEIISSSATVETYEEGCLSIPGVYLNVVRPSEIVLSFRDEMGRPRKMKADGLMAR 159

Query: 133 CLQHELDHLNGILFIDHLS 151
           C+QHE+DHL G+LF+D ++
Sbjct: 160 CIQHEMDHLEGVLFVDRVT 178


>gi|259417997|ref|ZP_05741916.1| peptide deformylase [Silicibacter sp. TrichCH4B]
 gi|259346903|gb|EEW58717.1| peptide deformylase [Silicibacter sp. TrichCH4B]
          Length = 169

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 85/147 (57%), Gaps = 1/147 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +PDP L  +  P+ +   D+  LI NMLE MY   G GLAA Q+GVL RL V+D+ 
Sbjct: 5   PIVKWPDPRLTAICAPVAE-GEDLSGLIANMLETMYDAPGRGLAAPQVGVLKRLFVMDVD 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                +NP+V +NP I+  + + +  +EGCLSIPD    V R   I VR+ D        
Sbjct: 64  WKDGARNPVVMVNPDILWRATEIAEGEEGCLSIPDVTTPVTRPTEIRVRWYDAKNTVNEQ 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
             DG  A C+QHE DHL+G +  DHLS
Sbjct: 124 CFDGFAARCIQHEYDHLDGRVTFDHLS 150


>gi|149922552|ref|ZP_01910982.1| peptide deformylase [Plesiocystis pacifica SIR-1]
 gi|149816579|gb|EDM76074.1| peptide deformylase [Plesiocystis pacifica SIR-1]
          Length = 177

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 96/162 (59%), Gaps = 2/162 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDP LR  +  +  +N +I +L+ +M + MY+ +  G+AA+Q+G L R+ +ID + 
Sbjct: 6   IVKYPDPRLREDTFDVADVNDEIRSLVRDMTDTMYALNAAGIAAIQVGRLERIFLIDGKV 65

Query: 66  HAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
               +N  P+VFINP+++       V +EGCLS PD   DVKR  +  VR +D N +   
Sbjct: 66  AGGDENSDPLVFINPEVVETGKGQVVAEEGCLSFPDVFVDVKRPRWAKVRALDVNGESFE 125

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +  D L    LQHE DHL G L ID +  +K++MI +KM + 
Sbjct: 126 VDGDELFGRALQHEHDHLTGKLMIDLVGMVKKEMIKRKMKRW 167


>gi|94268712|ref|ZP_01291263.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93451495|gb|EAT02324.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 259

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 19/183 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  +RP+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           I          D +D        A  +NP +V INP+++    +  V +EGCLS+ DY +
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            VKR   + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+
Sbjct: 191 KVKRYTRVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250

Query: 163 SKL 165
            K+
Sbjct: 251 KKI 253


>gi|78183988|ref|YP_376423.1| peptide deformylase [Synechococcus sp. CC9902]
 gi|123743565|sp|Q3AZU8|DEF_SYNS9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78168282|gb|ABB25379.1| peptide deformylase [Synechococcus sp. CC9902]
          Length = 201

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 85/138 (61%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR+ ++ I K+N  +  L  +ML  MY+  GIGLAA Q+ V  +L+VIDL        P+
Sbjct: 41  LRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDLDLENAATPPL 100

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V INP+I   S     Y+EGCLSIP    DV R   I + Y D   + + + ADGL+A C
Sbjct: 101 VLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRKMKADGLMARC 160

Query: 134 LQHELDHLNGILFIDHLS 151
           +QHE+DHLNG+LF+D ++
Sbjct: 161 IQHEMDHLNGVLFVDRVT 178


>gi|148266395|ref|YP_001233101.1| peptide deformylase [Geobacter uraniireducens Rf4]
 gi|146399895|gb|ABQ28528.1| peptide deformylase [Geobacter uraniireducens Rf4]
          Length = 168

 Score =  124 bits (310), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 105/169 (62%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + ++++P PIL+++  P+  I+  I  L+ ++L+ M++  G +G+AA QIGV  R+ 
Sbjct: 1   MPVQKILLYPHPILKKMCHPVAAIDRSITGLLQDLLDTMHAGPGSVGVAAPQIGVTLRVC 60

Query: 60  VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+    + K      +  INP+I T     ++ +EGC+S+PDY  DV+R+  IT+R+M
Sbjct: 61  VVDVSASRNGKENNHGLLQMINPEI-TKRQGAAIMREGCMSVPDYTGDVERATEITIRFM 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D +  H  I A G  A  +QHE+DHL+G+LF+D ++ LK  +  +K  K
Sbjct: 120 DGDGIHHEIEASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKSYK 168


>gi|221194831|ref|ZP_03567888.1| peptide deformylase [Atopobium rimae ATCC 49626]
 gi|221185735|gb|EEE18125.1| peptide deformylase [Atopobium rimae ATCC 49626]
          Length = 183

 Score =  124 bits (310), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PD  L      I +I  +I ++   ML+ MY+TDG+GLAA QIG+L R+VVID+  
Sbjct: 7   IVLWPDERLTDTCEEISEITDEIRDIAKRMLQDMYATDGVGLAAPQIGILKRMVVIDVDY 66

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +KNP V INP++IT   +   Y EGCLS P     V R + + V   + +       
Sbjct: 67  PDGQKNPFVLINPEVITADGEPRTYNEGCLSFPGITVPVTRPSHVVVHAQNLDGDLMQYE 126

Query: 126 ADG-LLATCLQHELDHLNGILFIDHLSRLKR 155
           A+G L A CLQHE+DH+NGI   DHL    R
Sbjct: 127 AEGDLFAVCLQHEIDHINGITMPDHLGPTAR 157


>gi|217034160|ref|ZP_03439580.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10]
 gi|216943444|gb|EEC22900.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10]
 gi|317182103|dbj|BAJ59887.1| peptide deformylase [Helicobacter pylori F57]
          Length = 175

 Score =  124 bits (310), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|154149172|ref|YP_001405640.1| peptide deformylase [Campylobacter hominis ATCC BAA-381]
 gi|153805181|gb|ABS52188.1| peptide deformylase [Campylobacter hominis ATCC BAA-381]
          Length = 171

 Score =  124 bits (310), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 99/162 (61%), Gaps = 4/162 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           ++ +P+  L + S+ +EK + ++   +D+M E M S  GIGLAA+Q+G   R +VI+L  
Sbjct: 5   ILTYPNKKLYQKSKKVEKFDDELGKFLDDMYETMISKKGIGLAAIQVGRPIRAIVINLVD 64

Query: 64  -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D   ++N +  INP+I+T   +  +YQEGCLS+P Y  DVKR+ F+ + + +   + +
Sbjct: 65  ENDEQKKENLLEIINPEILTQEGEI-IYQEGCLSVPGYYEDVKRAEFVKLGFQNRFGETK 123

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +    LLA C+QHE+DHL+G LFI+ +   KR    K+  K
Sbjct: 124 EMEVQELLAVCIQHEIDHLDGHLFIEKIGYNKRKKFDKEFKK 165


>gi|194477103|ref|YP_002049282.1| peptide deformylase [Paulinella chromatophora]
 gi|171192110|gb|ACB43072.1| peptide deformylase [Paulinella chromatophora]
          Length = 201

 Score =  124 bits (310), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 96/155 (61%), Gaps = 3/155 (1%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR  ++ I +IN ++ ++  +ML  MY+  GIGLAA Q+G+  +L+VID+        P+
Sbjct: 41  LRTSAKRIMRINEEVRDIARDMLRSMYAAKGIGLAAPQVGINKQLIVIDIDLENSTTPPI 100

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           + INP+II  +   + Y+EGCLSIP    DV R + I V + D     + +  DGLLA C
Sbjct: 101 ILINPEIIASNASLNTYEEGCLSIPGVYLDVVRPSIIEVSFRDEQDFPRCLKTDGLLARC 160

Query: 134 LQHELDHLNGILFIDHL---SRLKRDMITKKMSKL 165
           +QHE+DHL G+LF+D +   SRL+ +++   + K+
Sbjct: 161 IQHEMDHLKGVLFVDRVKDESRLEEELVKNNLRKV 195


>gi|116071395|ref|ZP_01468664.1| peptide deformylase [Synechococcus sp. BL107]
 gi|116066800|gb|EAU72557.1| peptide deformylase [Synechococcus sp. BL107]
          Length = 201

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 85/138 (61%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR+ ++ I K+N  +  L  +ML  MY+  GIGLAA Q+ V  +L+VIDL        P+
Sbjct: 41  LRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDLDLENAATPPL 100

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V INP+I   S     Y+EGCLSIP    DV R   I + Y D   + + + ADGL+A C
Sbjct: 101 VLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRKMKADGLMARC 160

Query: 134 LQHELDHLNGILFIDHLS 151
           +QHE+DHLNG+LF+D ++
Sbjct: 161 IQHEMDHLNGVLFVDRVT 178


>gi|227539328|ref|ZP_03969377.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241010|gb|EEI91025.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 192

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+LR+ ++ I++   +I  LI NM + MY+  G+GLAA QIG+  R+ VI
Sbjct: 1   MKLPIVAYGDPVLRKKTQEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLAIRVFVI 60

Query: 62  DL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           D         +D + +    VFINP I+  + +   + EGCLSIPD   +V R A + + 
Sbjct: 61  DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           Y+D N +   I   GL A  +QHE DHL G LF D L  LK+ M+  K+
Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKL 169


>gi|312143913|ref|YP_003995359.1| peptide deformylase [Halanaerobium sp. 'sapolanicus']
 gi|311904564|gb|ADQ15005.1| peptide deformylase [Halanaerobium sp. 'sapolanicus']
          Length = 150

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 91/143 (63%), Gaps = 5/143 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR  ++ ++KI    + LIDNM E MY+ +G+GLAA Q+G+L R+ VID+ +     
Sbjct: 11  DPVLRSKAKKVDKITPKTIQLIDNMFETMYAEEGVGLAAPQVGILKRIAVIDIGEG---- 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           N +V INP+II  +    + +EGCLSIP    +V RS  I V  ++ + +   I A+G  
Sbjct: 67  NKIVLINPEIIEENGKM-IMEEGCLSIPGRTGEVIRSKEIKVSSLNRDGEEIEIIAEGFE 125

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  +QHE+DHL+G+LFID +  L
Sbjct: 126 ARAIQHEIDHLDGVLFIDKMVEL 148


>gi|260072680|gb|ACX30577.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster
           bacterium]
          Length = 163

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 96/156 (61%), Gaps = 20/156 (12%)

Query: 31  LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--------AHRKN----------- 71
           L+ NM E MY+ DGIGLAA QI    ++VV+D+ D          +RKN           
Sbjct: 8   LVKNMFETMYAEDGIGLAATQINQHLQIVVMDVPDSQDDYELLLKNRKNDSDKETNIQHH 67

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P+ FINPKI T S     + EGCLS+P ++A+V+RS  IT+  ++   +   ++A  LLA
Sbjct: 68  PLCFINPKITTISG-HEKHIEGCLSVPGFQAEVERSNQITIEALNEQGESFTLHASNLLA 126

Query: 132 TCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            C+QHELDHL GILF+D+LS+LK+  + +K  K+++
Sbjct: 127 VCIQHELDHLKGILFVDYLSKLKQKRLLEKTKKVIK 162


>gi|325955519|ref|YP_004239179.1| peptide deformylase [Weeksella virosa DSM 16922]
 gi|323438137|gb|ADX68601.1| Peptide deformylase [Weeksella virosa DSM 16922]
          Length = 190

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 100/175 (57%), Gaps = 13/175 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ + DPILR+ +  IE+    +  LI+NM + MY ++G+GLAA QIG   R+ V+D +
Sbjct: 4   PIIAYGDPILRKKTALIEQDYPHLTELIENMFDTMYDSNGVGLAAPQIGKSIRMFVVDCR 63

Query: 65  DHAH-----------RKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A                 +FINPK I TF DD+  + EGCLSIP+   DV R   IT+
Sbjct: 64  PFAEDEDNDEEKETLENFKKIFINPKKIETFGDDWK-FTEGCLSIPNIHEDVTRPDGITL 122

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y+D N         GL A  +QHE DHL+G LFID+LS  K+ +I+ K+  + +
Sbjct: 123 TYLDENFVEHTESFTGLPARVIQHEYDHLDGKLFIDYLSSFKKKLISNKLKNISK 177


>gi|149200572|ref|ZP_01877580.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
 gi|149136344|gb|EDM24789.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
          Length = 197

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 15/170 (8%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID--LQDH 66
           F +P+LR+V+ PI +IN +I  L++ M++ MY  +GIGLAA Q+G   R+ VID   +D 
Sbjct: 13  FGNPVLRKVAEPISEINDEIRELVEEMVDTMYEENGIGLAAPQVGRSLRVFVIDTHFEDE 72

Query: 67  AHR---------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +          K P+  INP+II+ S +   ++EGCLSIP   A V R + I ++    
Sbjct: 73  TYGSDGEKLLCPKMPLALINPEIISTSGEDISFEEGCLSIPQINAAVVRPSNIVLKAQ-- 130

Query: 118 NAQHQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             + +II AD  GL + C+QHE+DHL+G+LF D   +    ++ KK+ +L
Sbjct: 131 TLEGEIIEADFGGLTSRCMQHEIDHLDGVLFTDKAEKDDLKLVAKKLEQL 180


>gi|33519686|ref|NP_878518.1| peptide deformylase [Candidatus Blochmannia floridanus]
 gi|39930852|sp|Q7VQC0|DEF_BLOFL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33517349|emb|CAD83734.1| polypeptide deformylase [Candidatus Blochmannia floridanus]
          Length = 175

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 2/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PD  LR+++R +  I+ D   +I +M E MY   GIGLAA Q+ +  +++VIDL +
Sbjct: 6   MLYYPDQRLRKIARSVSIISHDTKKIISDMFETMYFQQGIGLAATQVDIHQKIIVIDLNN 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +  ++  +VFINP II      +   EGCLSIP  RA V RS  I V+ +D N  +  + 
Sbjct: 66  NIQKR--LVFINPCIIKKIGTITHIIEGCLSIPKIRASVPRSQNIIVQSLDENGNNFEME 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LL+ C+QHE+DHL G LFID+LS  K   I KK++K 
Sbjct: 124 ATDLLSVCIQHEIDHLLGKLFIDYLSPFKIQRIHKKINKW 163


>gi|308184577|ref|YP_003928710.1| peptide deformylase [Helicobacter pylori SJM180]
 gi|308060497|gb|ADO02393.1| peptide deformylase [Helicobacter pylori SJM180]
          Length = 174

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIEAGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|85700143|gb|ABC74521.1| polypeptide deformylase [Helicobacter pylori]
 gi|85700145|gb|ABC74522.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|298207815|ref|YP_003715994.1| peptide deformylase [Croceibacter atlanticus HTCC2559]
 gi|83850453|gb|EAP88321.1| peptide deformylase [Croceibacter atlanticus HTCC2559]
          Length = 196

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 97/175 (55%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + +P+L++ ++ I K    +  LI+NM E MY   G+GLAA Q+G+  RL VID  
Sbjct: 4   PIVAYGNPVLKKKAKDITKDYPKLDELIENMWETMYGAHGVGLAAPQVGLPIRLFVIDPS 63

Query: 65  DHA--------HRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A         RK       +FINP I   + D   + EGCLSIPD R DV R   IT+
Sbjct: 64  PFADDEELTEEERKQLTGLKKLFINPVITEETGDEWAFSEGCLSIPDVREDVFRQPDITI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y+D N +       G+ A  +QHE DH+ GILF D LS LK+ +I  K++ + +
Sbjct: 124 EYVDENFKAHTETYTGIAARVIQHEYDHIEGILFTDKLSSLKKRLIKGKLNNISK 178


>gi|302335855|ref|YP_003801062.1| peptide deformylase [Olsenella uli DSM 7084]
 gi|301319695|gb|ADK68182.1| peptide deformylase [Olsenella uli DSM 7084]
          Length = 180

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 92/153 (60%), Gaps = 1/153 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +V  PD  LR    PIEKI++ +  L   MLE MY+T+G+GLAA Q+G L +LVVID+
Sbjct: 5   EEIVTAPDERLRTECAPIEKIDNKVRLLAKRMLEDMYATEGVGLAAPQVGELVQLVVIDV 64

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                +++P V INP+++    D  V  EGCLS P     V R + + V  +D +     
Sbjct: 65  DYADGKRSPYVLINPRVVVADGDEVVGSEGCLSFPGITVQVSRPSHVVVEALDLDGDLMR 124

Query: 124 IYA-DGLLATCLQHELDHLNGILFIDHLSRLKR 155
             A + LLA CLQHE+DHL+GI  +DHLS  +R
Sbjct: 125 YEARNNLLAVCLQHEIDHLHGITMLDHLSPARR 157


>gi|313674138|ref|YP_004052134.1| peptide deformylase [Marivirga tractuosa DSM 4126]
 gi|312940836|gb|ADR20026.1| peptide deformylase [Marivirga tractuosa DSM 4126]
          Length = 185

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +  P+L+   + I+K   D+  L+D+M E MY+ +G+GLAA QIG   RL VID  
Sbjct: 4   PIVAYGHPVLKTKGKDIDKGEIDVKTLVDDMFETMYNANGVGLAAPQIGKSLRLFVIDTD 63

Query: 65  ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               +    K    FINP+I+    +   ++EGCLSIP+ R DV R   I ++Y D N  
Sbjct: 64  PIDDEEDQPKVKQAFINPQILEEEGEEWAFEEGCLSIPNIREDVNRKPTIRIKYFDENWN 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DG +A  +QHE DH+ GILF DH+S  K+ ++  K++ + + +
Sbjct: 124 EHEKEYDGFVARVIQHEYDHIEGILFTDHVSAFKKRILKGKLANISKGK 172


>gi|212703762|ref|ZP_03311890.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098]
 gi|212672730|gb|EEB33213.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098]
          Length = 170

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 97/165 (58%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P   L+    P+ +I  +I  L  +MLE MY   G+GLAA Q+G   R++V+D   
Sbjct: 5   IVTYPAASLKEKCVPVTEITDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVMDPAA 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQII 124
               K P V INP++    +     QEGCLS+P +YRADV+R+  + +RYMD +   +I+
Sbjct: 65  QDEEKQPRVVINPELTLSEETVLSRQEGCLSVPLNYRADVQRAERVHLRYMDLDG--KIV 122

Query: 125 YAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             D  G  A  +QHE DHL+G LFID + RL+R +   ++ K ++
Sbjct: 123 EEDLEGFAAIVIQHEADHLDGTLFIDRIGRLRRSLYDTRVKKWLK 167


>gi|289578510|ref|YP_003477137.1| peptide deformylase [Thermoanaerobacter italicus Ab9]
 gi|289528223|gb|ADD02575.1| peptide deformylase [Thermoanaerobacter italicus Ab9]
          Length = 159

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 93/143 (65%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++P+ +INS ++ ++D+M++ MY  +G+GLAA Q+G+L RL+VID+ +     
Sbjct: 11  DEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIVIDIGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+ + +   V  EGCLSIP    +VKR   + VRY+D   + + I  + LL
Sbjct: 66  GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVRYLDREGKEREIEGEDLL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  L HE+DHLNG+LFID   R 
Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147


>gi|157737933|ref|YP_001490617.1| peptide deformylase [Arcobacter butzleri RM4018]
 gi|157699787|gb|ABV67947.1| polypeptide deformylase [Arcobacter butzleri RM4018]
          Length = 171

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 104/164 (63%), Gaps = 4/164 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +P+ +LR  S+ +EK ++++  L+D+M E M + +G+GLAA+Q+ V   ++VI+L
Sbjct: 3   REVITYPNKLLRLKSKDVEKFDNELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVINL 62

Query: 64  --QDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             ++    KN ++  INP +IT  D   V+ EGCLS+P +  DV R+  I V Y +   +
Sbjct: 63  PNEEDIQDKNDLIEAINP-VITHKDGTQVFTEGCLSVPGFSEDVTRAEHIIVEYFNRFGE 121

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q + ++G LA   QHE++HL+G LFI++LS +KR    K+  K
Sbjct: 122 KQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKK 165


>gi|67923097|ref|ZP_00516588.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
 gi|67855050|gb|EAM50318.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
          Length = 188

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 86/140 (61%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D  LR+ ++ I K++  I  L   ML+ MYS+ GIGLAA Q+ +  +L+V+D +      
Sbjct: 24  DRALRQPAKRIAKVDDSIRKLAKEMLQTMYSSQGIGLAAPQVAIQKQLIVVDCEPDNPAN 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +P++ INPKI  FS +  V +EGCLSIP    DV R   I V + D   + + I A  LL
Sbjct: 84  SPLILINPKITVFSKELCVVEEGCLSIPGVYLDVTRPKAIEVSFKDEQGKPRKIQATELL 143

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A  +QHE+DHLNG++F+D +
Sbjct: 144 ARVIQHEMDHLNGVMFVDRV 163


>gi|237753393|ref|ZP_04583873.1| polypeptide deformylase pdf formylmethioninedeformylase
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229375660|gb|EEO25751.1| polypeptide deformylase pdf formylmethioninedeformylase
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 168

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 103/162 (63%), Gaps = 4/162 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P+P+LR++S+ +E  +  +  L+D M EVM + +G+G++A+Q+    R ++I + D
Sbjct: 4   VITYPNPLLRQISKSVEVFDKGLHTLLDEMYEVMLAKNGVGISAIQVAKPIRALLICIPD 63

Query: 66  ---HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              + H+++ +  INPKII   D   ++ EGCLS+P++  ++KR++ I + Y D     Q
Sbjct: 64  EDGNQHKEDLLEVINPKIIE-RDGEILFNEGCLSVPEFYEEIKRASNIKIAYQDRYGNPQ 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            I A   LA   QHE+DHLNG+LFID LS +KR    K++ +
Sbjct: 123 EIVAQDYLAVAFQHEIDHLNGVLFIDKLSIVKRKKFEKELKQ 164


>gi|99082419|ref|YP_614573.1| peptide deformylase [Ruegeria sp. TM1040]
 gi|99038699|gb|ABF65311.1| Peptide deformylase [Ruegeria sp. TM1040]
          Length = 169

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +PDP L     P+     D+  LID++LE MY+  G GLAA Q+GVL R+ V+D+ 
Sbjct: 5   PIVQWPDPRLSTACAPV-GAAEDLGTLIDDVLETMYAAPGRGLAAPQVGVLKRVFVMDVD 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                +NP+V I P+++  SDD ++ +E CLSIP     + R   I +R+ D +   Q  
Sbjct: 64  WKEGPRNPVVMIYPEVLWRSDDTTLAKEACLSIPGLSTRITRPTKIRIRWQDADRAAQEQ 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
             DG  A C+QHE DHL+G +  DH S  +R ++  +
Sbjct: 124 TFDGFAARCIQHEYDHLDGRVTFDHFSSEERRLLEAQ 160


>gi|89895440|ref|YP_518927.1| hypothetical protein DSY2694 [Desulfitobacterium hafniense Y51]
 gi|123091730|sp|Q24U09|DEF_DESHY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|89334888|dbj|BAE84483.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 150

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 90/143 (62%), Gaps = 6/143 (4%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +LR  + P+++I  +I  L+DNML+ +Y  +G+GLAA Q+GV  R+VVID+ +      P
Sbjct: 13  VLREKAVPVKEITPNIEKLLDNMLDTLYDANGVGLAAPQVGVSKRVVVIDVGE-----GP 67

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +  INP II    +  +  EGCLSIP     V R+A + V  ++   + Q+I  +GLLA 
Sbjct: 68  IELINPVIIAKEGE-DLDDEGCLSIPGITGQVARAAKVKVEALNRQGELQVIEGEGLLAR 126

Query: 133 CLQHELDHLNGILFIDHLSRLKR 155
           CLQHE+DHL GILF+D   + +R
Sbjct: 127 CLQHEIDHLEGILFVDKAKKTQR 149


>gi|304440681|ref|ZP_07400565.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370868|gb|EFM24490.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 160

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 85/138 (61%), Gaps = 5/138 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR++S+ +  IN  +  LI +M E M  ++G+GLAA Q+G+L R++ +D QD     
Sbjct: 11  DPILRKISKEVNDINDRMKTLISDMFETMDYSNGVGLAAPQVGILRRIITLDDQDGLR-- 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
               FINPKII   D   V  EGCLS+P  +  V R+  I V YMD N + + + A+G  
Sbjct: 69  --GAFINPKIIE-KDGEQVGPEGCLSVPGKQGTVNRANHIVVTYMDENGEEKTLEAEGFT 125

Query: 131 ATCLQHELDHLNGILFID 148
           A   QHE+DHLNGIL+ D
Sbjct: 126 ARIFQHEIDHLNGILYTD 143


>gi|78778228|ref|YP_394543.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251]
 gi|78498768|gb|ABB45308.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251]
          Length = 178

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 102/167 (61%), Gaps = 4/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  +V +PD  L+  S+ +EK + ++  L++ M   M  ++GIGLAA+Q+G   +++++
Sbjct: 1   MKLTIVEYPDKRLKEKSKIVEKFDEELHKLLEAMYASMIESNGIGLAAIQVGYAKQVLLL 60

Query: 62  DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++    D   R + +  INP IIT S+  ++YQEGCLS+P +  DV R   + V Y D  
Sbjct: 61  NIPDDNDEQSRDSLIEMINP-IITQSEGETIYQEGCLSVPSFYEDVSRFERVCVNYQDRE 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              + I A GLL+  +QHE+DHL+G+LFID LS  +R    K+  K+
Sbjct: 120 GNTKTIEATGLLSVAIQHEIDHLHGVLFIDKLSYSRRKKFEKEYKKV 166


>gi|315586543|gb|ADU40924.1| peptide deformylase [Helicobacter pylori 35A]
          Length = 175

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|27904914|ref|NP_778040.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29611708|sp|P59493|DEF_BUCBP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|27904312|gb|AAO27145.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 160

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 99/154 (64%), Gaps = 5/154 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHA 67
           +PD  LR +++PI KI++ I N+I NM + MY  +GIGLAA Q+ +  +++VID +++  
Sbjct: 9   YPDDRLRIIAKPISKIDTKIHNIIINMFDTMYYENGIGLAATQVNIPLQIIVIDKIEELN 68

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           H   P+V INPKI   S   S+ QEGCLSIP+Y+A++ RS  ITV  ++   +   +   
Sbjct: 69  H---PLVLINPKITKRSGLTSI-QEGCLSIPNYQAEISRSKKITVTALNYFGKRIKLKTS 124

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
             L+ C+QHE+DHL G L ID+LS L    + KK
Sbjct: 125 STLSICIQHEIDHLIGKLLIDYLSNLTNLKLLKK 158


>gi|225181326|ref|ZP_03734770.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
 gi|225167907|gb|EEG76714.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
          Length = 154

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 89/143 (62%), Gaps = 4/143 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR  ++ + +I   +  L+++M+E MY  +GIGLAA Q+G+  R++VID+QD     
Sbjct: 11  DPVLREKAKEVPEITPQVKKLLEDMVETMYDAEGIGLAAPQVGISKRIIVIDVQDET--- 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+II+  +      EGCLS P    +V+R   +TVR  D +     I A GLL
Sbjct: 68  GVLKLINPEIIS-GEGKETSVEGCLSFPGVAGEVERDESVTVRAQDPDGNTVEICASGLL 126

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A   QHE+DHL+GILF+D ++RL
Sbjct: 127 ARAFQHEIDHLDGILFVDKVTRL 149


>gi|85700139|gb|ABC74519.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  123 bits (309), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 101/159 (63%), Gaps = 4/159 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKE 166


>gi|227500109|ref|ZP_03930180.1| peptide deformylase [Anaerococcus tetradius ATCC 35098]
 gi|227217824|gb|EEI83121.1| peptide deformylase [Anaerococcus tetradius ATCC 35098]
          Length = 158

 Score =  123 bits (308), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 89/138 (64%), Gaps = 3/138 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR++SR + +I   I  L+D+M + MY  DG+GLAA Q+G+L R++V+D  D +   
Sbjct: 11  DPILRKISRNVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIVVDPHDDS--T 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  +NP+II   D   V  EGCLSIP++ A VKR   + V+Y++ N + +I  A G  
Sbjct: 69  GLIKLVNPEIIE-EDGEQVGIEGCLSIPNFNATVKRPEHVKVKYLNENGEEKIWDAHGFP 127

Query: 131 ATCLQHELDHLNGILFID 148
           A  L HE+DHLNGILF D
Sbjct: 128 AEILSHEIDHLNGILFRD 145


>gi|317012603|gb|ADU83211.1| peptide deformylase [Helicobacter pylori Lithuania75]
          Length = 174

 Score =  123 bits (308), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPKEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 AIELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|218248691|ref|YP_002374062.1| peptide deformylase [Cyanothece sp. PCC 8801]
 gi|257061756|ref|YP_003139644.1| peptide deformylase [Cyanothece sp. PCC 8802]
 gi|218169169|gb|ACK67906.1| peptide deformylase [Cyanothece sp. PCC 8801]
 gi|256591922|gb|ACV02809.1| peptide deformylase [Cyanothece sp. PCC 8802]
          Length = 187

 Score =  123 bits (308), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 89/141 (63%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I K++  I  L   ML+ MYS++GIGLAA Q+GV  +L+V+D   +    
Sbjct: 24  DRVLRQPAKRIAKVDDTIRQLAKEMLQTMYSSNGIGLAAPQVGVHKQLIVVDCDPNDPAN 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+I  FS +  V +EGCLSIP    DV R   I V + D   + + + A  LL
Sbjct: 84  QPIILINPQITRFSQELCVVEEGCLSIPGVYLDVTRPKAIEVSFRDEQGKPRKLQATDLL 143

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  +QHE+DHLNG++F+D ++
Sbjct: 144 ARVIQHEMDHLNGVMFVDRVN 164


>gi|20807950|ref|NP_623121.1| peptide deformylase [Thermoanaerobacter tengcongensis MB4]
 gi|23396539|sp|Q8R9T0|DEF_THETN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|20516520|gb|AAM24725.1| N-formylmethionyl-tRNA deformylase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 159

 Score =  123 bits (308), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 92/143 (64%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR+ ++P+ +INS I+ ++++M E MY  DG+GLAA Q+G+L RLVVID+ +     
Sbjct: 11  DPVLRKKAKPVTEINSHIITILEDMAETMYLNDGVGLAANQVGILRRLVVIDVGEGL--- 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+ + +   +  EGCLSIP    +VKR   + VRY+D     + I  + LL
Sbjct: 68  --LELINPEIV-YEEGEQIGPEGCLSIPGVFGEVKRPQKVKVRYLDREGNVKEIVGEDLL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  L HE+DHL G+LF+D + R 
Sbjct: 125 ARALCHEIDHLEGVLFVDKVIRF 147


>gi|310828897|ref|YP_003961254.1| peptide deformylase [Eubacterium limosum KIST612]
 gi|308740631|gb|ADO38291.1| peptide deformylase [Eubacterium limosum KIST612]
          Length = 146

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 6/140 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR+ +R I +IN  I+ L  +ML+ MY+ +G+GLAA Q+GVL +L+VID+ +     
Sbjct: 11  DPILRKKTREITEINDRIIELQKDMLDTMYAEEGVGLAAPQVGVLKQLIVIDIGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+  INP+I T  +   V +E CLS PD    V+R  F+TV Y D N     +   GL+
Sbjct: 66  GPVTLINPEI-TKQEGSVVEEEACLSFPDRSGKVERPEFVTVEYTDLNGDRYEMECQGLM 124

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A  + HE+DHLNGI+F+D +
Sbjct: 125 ARAVCHEVDHLNGIVFLDRV 144


>gi|303326112|ref|ZP_07356555.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
 gi|302864028|gb|EFL86959.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
          Length = 172

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 1/166 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDP L++   P+ ++  +I  L  +MLE MY+  G+GLAA Q+G   R++V+D   
Sbjct: 5   IVTYPDPRLKQPCEPVTEVTDEIRKLAADMLETMYAAPGVGLAAPQVGRNIRMLVMDPAG 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQII 124
               K P V INP +    +D    QEGCLS+P +YRADV R + + ++  D +      
Sbjct: 65  KDEDKQPRVLINPVLELSGEDVVSEQEGCLSVPLNYRADVPRKSRVLLKATDLDGNGIEE 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 A  +QHE DHL+GILFID +SRL+R +   K+ K ++ ++
Sbjct: 125 DLTDFPAIIIQHEADHLDGILFIDKISRLRRTLYDSKVKKWLKRKN 170


>gi|78187332|ref|YP_375375.1| formylmethionine deformylase [Chlorobium luteolum DSM 273]
 gi|123730026|sp|Q3B2U9|DEF_PELLD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78167234|gb|ABB24332.1| peptide deformylase [Chlorobium luteolum DSM 273]
          Length = 190

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 100/160 (62%), Gaps = 3/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  + D +L + ++P++ +++DI +LID+M E M +  GIGLAA Q+G   RL+V+D+ 
Sbjct: 4   PINTYSDEVLHQKAKPLKGVDADISSLIDSMFESMENASGIGLAAPQVGCSIRLLVLDVS 63

Query: 65  DHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                ++  PMV INP ++      ++ +EGCLS+P  + DV R + IT++Y D N Q  
Sbjct: 64  CMKSYEDVPPMVVINPNVLAVRGK-NLMEEGCLSVPGVQGDVLRPSEITLKYRDRNFQEH 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
                G+LA  LQHE+DHLNG LF+D + +  R  I +++
Sbjct: 123 TEEFSGMLARVLQHEIDHLNGTLFVDRMEKRDRRRIQQEL 162


>gi|108563203|ref|YP_627519.1| peptide deformylase [Helicobacter pylori HPAG1]
 gi|123373755|sp|Q1CT77|DEF_HELPH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|107836976|gb|ABF84845.1| polypeptide deformylase [Helicobacter pylori HPAG1]
          Length = 174

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|300722039|ref|YP_003711319.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
 gi|297628536|emb|CBJ89108.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
          Length = 168

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 99/166 (59%), Gaps = 5/166 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++  PD  LR+    +   +  +  L+D+MLE MY+TD GIGLAA Q+G    ++VIDL 
Sbjct: 6   ILTIPDERLRQKCVDVTDFDK-VQTLVDDMLETMYATDNGIGLAAPQVGRKEAVLVIDL- 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               R  P V +NPKI+   +   V QEGCLSIP Y ADV+R   + V   D       I
Sbjct: 64  -SPDRDKPTVLVNPKIVE-KERRVVNQEGCLSIPGYYADVERFEKVKVEAFDRQGNQTTI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ++  L+  +QHE+DHLNG++FID+LS L+R M  KK+ K +  R+
Sbjct: 122 ESEDFLSIVMQHEIDHLNGVIFIDYLSPLRRKMALKKVQKYISNRN 167


>gi|208434704|ref|YP_002266370.1| polypeptide deformylase [Helicobacter pylori G27]
 gi|238058212|sp|B5Z7F5|DEF_HELPG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|208432633|gb|ACI27504.1| polypeptide deformylase [Helicobacter pylori G27]
          Length = 174

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|207091735|ref|ZP_03239522.1| peptide deformylase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 175

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|261837976|gb|ACX97742.1| polypeptide deformylase [Helicobacter pylori 51]
 gi|317177377|dbj|BAJ55166.1| peptide deformylase [Helicobacter pylori F16]
 gi|317180556|dbj|BAJ58342.1| peptide deformylase [Helicobacter pylori F32]
          Length = 175

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +I+ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKILE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|33864860|ref|NP_896419.1| peptide deformylase [Synechococcus sp. WH 8102]
 gi|39930836|sp|Q7U9D4|DEF_SYNPX RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33632383|emb|CAE06839.1| putative formylmethionine deformylase [Synechococcus sp. WH 8102]
          Length = 201

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 85/139 (61%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +LR+ +R I K+      L  +ML  MY+  GIGLAA Q+G+  +L+VIDL        P
Sbjct: 40  VLRQSARRIGKVTEQTRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPP 99

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +V INP+I   S     Y+EGCLSIP    DV R   I + + D   + + + ADGL+A 
Sbjct: 100 LVLINPEISAASASIDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMAR 159

Query: 133 CLQHELDHLNGILFIDHLS 151
           C+QHE+DHLNG+LF+D ++
Sbjct: 160 CIQHEMDHLNGVLFVDRVT 178


>gi|227824654|ref|ZP_03989486.1| peptide deformylase [Acidaminococcus sp. D21]
 gi|226905153|gb|EEH91071.1| peptide deformylase [Acidaminococcus sp. D21]
          Length = 164

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 4/145 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V    PILR  +  + + +  +   +  M E MY+ +G GLAA QIG+  R++VID  
Sbjct: 13  PIVKVGAPILREKAEAVTRFDKKLEKTLKAMAESMYANNGCGLAAPQIGLSKRMIVIDAD 72

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D A  +    F+NP +  F  +  +  EGCLS+ DY  +VKR+A +TVR+ D    H  +
Sbjct: 73  DGAGIRE---FVNPVLSEFKGE-EIDTEGCLSVDDYEGEVKRAAEVTVRFQDRKGGHWRL 128

Query: 125 YADGLLATCLQHELDHLNGILFIDH 149
            A GLLA  LQHE DHL+GILFID 
Sbjct: 129 TASGLLARALQHECDHLDGILFIDR 153


>gi|56477100|ref|YP_158689.1| peptide deformylase [Aromatoleum aromaticum EbN1]
 gi|56313143|emb|CAI07788.1| N-formylmethionyl-tRNA deformylase 1 [Aromatoleum aromaticum EbN1]
          Length = 167

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 3/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L + + P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R+VVID+ 
Sbjct: 5   PILRYPDPRLHKHAAPVAVVDDSIRQLVRDMAETMYEAPGVGLAATQVDVHKRVVVIDVS 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   R     FINP+I+  S + +  +EGCLS+P     V R+  + VR +D   +   +
Sbjct: 65  ED--RSTLRAFINPEILEKSGEQTC-EEGCLSVPGVYEKVTRAERVKVRALDERGEPFEL 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A+GLLA C+QHE+DHL+G +F+++LS LK   I  +++K
Sbjct: 122 EAEGLLAVCIQHEIDHLDGRVFVEYLSPLKLGRIKARLAK 161


>gi|15639744|ref|NP_219194.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025982|ref|YP_001933754.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
 gi|6014952|sp|O83738|DEF_TREPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238689341|sp|B2S3Z6|DEF_TREPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|3323063|gb|AAC65724.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018557|gb|ACD71175.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
 gi|291060119|gb|ADD72854.1| peptide deformylase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 162

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           L    +P L  VS P+ +++  +   I  M  VM    G+GLAA Q+G   R+ V+D++ 
Sbjct: 3   LKFLGEPCLTTVSEPVSEVDEQLRAFISGMFRVMRGAGGVGLAAPQVGRTVRVFVVDVEH 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           H        FINP+I   S++ S Y+EGCLSIP     V R   ++V+Y+D N +   + 
Sbjct: 63  HVR-----AFINPQITAASEEQSSYEEGCLSIPHIYERVLRPRRVSVQYLDENGKRCAVD 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADG+LA  +QHE DHL+GILF+D +   +RD   ++ + L
Sbjct: 118 ADGILARVIQHEYDHLDGILFLDRIDEKRRDDALRRYAAL 157


>gi|145220094|ref|YP_001130803.1| peptide deformylase [Prosthecochloris vibrioformis DSM 265]
 gi|189083076|sp|A4SFP2|DEF_PROVI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145206258|gb|ABP37301.1| peptide deformylase [Chlorobium phaeovibrioides DSM 265]
          Length = 190

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 3/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  + D +L + ++P++ ++  +  LID+M E M +  GIGLAA Q+G   RL+V+D+ 
Sbjct: 4   PITTYTDEVLHQTAKPLKGVDGAVEELIDSMFESMENASGIGLAAPQVGHSLRLLVLDIS 63

Query: 65  DHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                ++  PMV INP I++     ++ +EGCLS+P  + DV+R + IT++Y D N   Q
Sbjct: 64  CMKSYEDVAPMVVINPHILSVKGK-NLMEEGCLSVPGVQGDVQRPSSITLKYRDRNFLEQ 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                G+LA  LQHE+DHL+G LFID + +  R  I K++  + +
Sbjct: 123 TEEFSGMLARVLQHEIDHLSGTLFIDRMEKRDRRKIQKELDDIAK 167


>gi|95931365|ref|ZP_01314077.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
 gi|95132581|gb|EAT14268.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
          Length = 166

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 100/166 (60%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M  + ++++PDP L+ V RP E  ++D   L+ ++++ MY S   +G+AA QIG+  R+ 
Sbjct: 1   MAVREVLVYPDPRLKEVCRPAEVGHADTAALVQDLIDTMYDSGHSVGIAAPQIGICQRVA 60

Query: 60  VIDLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+ +      H    +  +NP II  S    V +EGC+S+PDY  +V+R+  I V++ 
Sbjct: 61  VVDVSNSKLGKKHNHGLVTMVNPTIIE-STGSKVMREGCMSVPDYTGNVERAREIVVQFY 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           D   Q Q++   G  A  +QHELDHL+G+LF+D +S  K D+  +K
Sbjct: 120 DQEGQDQVMRCKGFEAVAIQHELDHLDGLLFLDRVSNPKADIFKRK 165


>gi|217032886|ref|ZP_03438363.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128]
 gi|298736496|ref|YP_003729022.1| peptide deformylase [Helicobacter pylori B8]
 gi|216945380|gb|EEC24048.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128]
 gi|298355686|emb|CBI66558.1| peptide deformylase [Helicobacter pylori B8]
          Length = 174

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKWIETGGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|315646177|ref|ZP_07899297.1| peptide deformylase [Paenibacillus vortex V453]
 gi|315278376|gb|EFU41692.1| peptide deformylase [Paenibacillus vortex V453]
          Length = 164

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 4/148 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  PD +L + ++ + KI  ++  L+D+M + MY  DG+GLAA Q+G+L RL+VID  D
Sbjct: 6   IVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDADGVGLAAPQVGILKRLIVIDAGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  INP+I+  S+      EGCLSIP +  DV+R+  +TV+ +D      I+ 
Sbjct: 66  E---HGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGNELIVT 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153
             GLLA   QHE+DHLNG+LF +   R+
Sbjct: 122 GTGLLARAFQHEIDHLNGVLFTEIADRV 149


>gi|254460696|ref|ZP_05074112.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
 gi|206677285|gb|EDZ41772.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 166

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 87/162 (53%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PD  L+     +E I  +I  L+ +M E MY+  G GLAA Q+GV+ RL V+D  
Sbjct: 5   PIITWPDVRLQTECAAVEAIGPEIEQLVGDMFETMYTAPGRGLAASQVGVMRRLFVMDAT 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                 NP+V INP I+  SD  S  +E CLSI    ADV R   I + Y   N +    
Sbjct: 65  WKEGDMNPLVCINPSIVPLSDARSTNEEACLSIVGVSADVSRPNEIELSYTGLNGKRVTA 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             +G  A C QHE+DHL+G +  DHL   +R  +  K  +++
Sbjct: 125 VIEGFAAVCAQHEMDHLDGRVIFDHLGAPERAALEAKYKEII 166


>gi|297379991|gb|ADI34878.1| peptide deformylase [Helicobacter pylori v225d]
          Length = 175

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 101/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+ +I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMFIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFFEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEMDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|262195424|ref|YP_003266633.1| peptide deformylase [Haliangium ochraceum DSM 14365]
 gi|262078771|gb|ACY14740.1| peptide deformylase [Haliangium ochraceum DSM 14365]
          Length = 175

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 99/162 (61%), Gaps = 2/162 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P+V++PD  LR+ +R +E+++  + +L  N+++ MYS +G+G+AAVQIG   ++ +++  
Sbjct: 5   PIVVWPDARLRQETRRVEQVDDAVRDLYRNLVDTMYSLNGLGIAAVQIGDPTQMFIVEPA 64

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           L        P+ FINP+++  S+D    +EGCLS P     V R A   VR +  + +  
Sbjct: 65  LAGRDANDEPVAFINPEVVWTSEDSDKSEEGCLSFPGIYVQVDRPAKARVRALGIDGEIF 124

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + A+GL A CL HE DHL G L +D +  LKR MI +K+++
Sbjct: 125 EVEAEGLFARCLLHENDHLTGKLLVDFVGPLKRQMIRRKLNR 166


>gi|88802639|ref|ZP_01118166.1| peptide deformylase [Polaribacter irgensii 23-P]
 gi|88781497|gb|EAR12675.1| peptide deformylase [Polaribacter irgensii 23-P]
          Length = 196

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 86/159 (54%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ + DP+LR+VS  I +   D+  LI NM E MY+  G+GLAA QIG   RL +ID  
Sbjct: 4   PIIAYGDPVLRKVSEDIPEDYPDLDKLIHNMRETMYNASGVGLAAPQIGKAIRLFLIDAS 63

Query: 65  DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A  +               VFIN +II    +  V+ EGCLSIPD R DV R   I +
Sbjct: 64  PFAEDEELSEKDRNVLKTFNKVFINAQIIAEEGEEWVFNEGCLSIPDVREDVSRQPVIKI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +Y D N +      +GL A   QHE DH+ GILF D LS
Sbjct: 124 KYQDENFKKHFETLEGLAARVFQHEYDHIEGILFTDKLS 162


>gi|29345830|ref|NP_809333.1| peptide deformylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253567816|ref|ZP_04845227.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6]
 gi|298384715|ref|ZP_06994275.1| peptide deformylase [Bacteroides sp. 1_1_14]
 gi|39930885|sp|Q8AAP4|DEF_BACTN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|29337723|gb|AAO75527.1| peptide deformylase(PDF) [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841889|gb|EES69969.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6]
 gi|298262994|gb|EFI05858.1| peptide deformylase [Bacteroides sp. 1_1_14]
          Length = 184

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 97/168 (57%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I L 
Sbjct: 4   PIYVYGQPVLRKVAEDITPEYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D+   K+    +INP II    +    +EGCLS+P     VKR   I V+YMD N 
Sbjct: 64  PLSEDYPEFKDFNKAYINPHIIEVGGEEVSMEEGCLSLPGIHESVKRGNKIRVKYMDENF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +++
Sbjct: 124 VEHDEVVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIRGKLNTMLK 171


>gi|284054434|ref|ZP_06384644.1| peptide deformylase [Arthrospira platensis str. Paraca]
 gi|291565688|dbj|BAI87960.1| peptide deformylase [Arthrospira platensis NIES-39]
          Length = 187

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 91/150 (60%), Gaps = 2/150 (1%)

Query: 3   KKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           K PL I    D +LR+ ++ + +I+ +I  L+  ML+ MYS DGIGLAA Q+GV  +++V
Sbjct: 14  KTPLDIHYLGDRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIV 73

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID +       P+V INP I   S + S +QEGCLSIP    DV R   + V + D N +
Sbjct: 74  IDCEPDNAATPPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGR 133

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + I A  LL   +QHE+DHL G+LF+D +
Sbjct: 134 PRTILATELLCRAIQHEIDHLQGVLFVDRV 163


>gi|82701528|ref|YP_411094.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
 gi|82409593|gb|ABB73702.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
          Length = 191

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 97/156 (62%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  ++ P+ ++  +I  L+ +M E MY+  G+GLAA Q+ V  R++VID+ +   
Sbjct: 33  YPDERLHTIAAPVPEVTDEIRVLVQDMAETMYAAPGVGLAATQVDVHKRVIVIDVSNT-- 90

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +V INP+I T   + S Y+EGCLS+P     V R+A ITV  ++ + +   + ADG
Sbjct: 91  HDQLLVLINPEITTHEGE-SDYEEGCLSVPGIFGKVPRAAQITVEALNKDGERFTLDADG 149

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++ SR+K+  I  K  K
Sbjct: 150 LLAVCIQHEMDHLLGRVFVEYWSRMKQSRIQAKFRK 185


>gi|15965155|ref|NP_385508.1| peptide deformylase [Sinorhizobium meliloti 1021]
 gi|307309167|ref|ZP_07588838.1| peptide deformylase [Sinorhizobium meliloti BL225C]
 gi|23396568|sp|Q92QD0|DEFL_RHIME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|15074335|emb|CAC45981.1| Putative polypeptide deformylase [Sinorhizobium meliloti 1021]
 gi|306900313|gb|EFN30929.1| peptide deformylase [Sinorhizobium meliloti BL225C]
          Length = 172

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 95/165 (57%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP P+L   +  I + +  +  L D++++ M +  GIG+ A  IG+L RL V
Sbjct: 1   MAVRPIIRFPSPLLTTSAERIGRFDGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I++        P  F+NP+I+  S + + + EG +S+P    +V+R   + V +   + +
Sbjct: 61  IEVDPQT---GPRSFVNPEIVWQSSETAWHTEGSVSMPGVAEEVERPVRVRVSFQTLDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +   A+GL+A CLQHE+D LNGI +I  LSRLKR+   K+  K 
Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKF 162


>gi|224023749|ref|ZP_03642115.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
           18228]
 gi|224016971|gb|EEF74983.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
           18228]
          Length = 184

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 97/167 (58%), Gaps = 5/167 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA Q+G+  R+VV++L 
Sbjct: 4   PIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVVNLD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               D    K+   V+INP I+   D+    +EGCLS+P     VKR   I V Y+D N 
Sbjct: 64  VLSDDMPEFKDFKRVYINPHILETGDEMVSMEEGCLSLPGIHESVKRPDRIHVTYLDENM 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                + +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +V
Sbjct: 124 TAHDEWVEGYLARVMQHEFDHLDGTMFIDHLSSLRKQMIRGKLNNMV 170


>gi|260062214|ref|YP_003195294.1| peptide deformylase [Robiginitalea biformata HTCC2501]
 gi|88783776|gb|EAR14947.1| peptide deformylase [Robiginitalea biformata HTCC2501]
          Length = 196

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 85/159 (53%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DP+LRR    I     ++  LI+NM E MY  +G+GLAA Q+G   RL ++D  
Sbjct: 4   PIVAYGDPVLRRKCEAIGPEYPELATLIENMWETMYQANGVGLAAPQVGRPIRLFLVDTS 63

Query: 65  DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A             R    VFIN ++   +     + EGCLSIPD R DV R   IT+
Sbjct: 64  PFAEDEDFSPEEQEKLRAFKRVFINAQMQEETGKKWAFNEGCLSIPDIREDVTRQDTITL 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           RY D   +      DGLLA  +QHE DH+ GILF DH+S
Sbjct: 124 RYQDAEFKEHTETFDGLLARVIQHEYDHIEGILFTDHIS 162


>gi|222099700|ref|YP_002534268.1| Peptide deformylase [Thermotoga neapolitana DSM 4359]
 gi|254767608|sp|B9K7G9|DEF_THENN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|221572090|gb|ACM22902.1| Peptide deformylase [Thermotoga neapolitana DSM 4359]
          Length = 164

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 92/155 (59%), Gaps = 5/155 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +F DP+LR+ ++P+ K +  +   I+ M+E MY  DG+GLAA Q+G+  R  V+D+ +  
Sbjct: 6   VFGDPVLRKRAKPVTKFDEALKRTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-- 63

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               P+  INP+I+  S +  + +EGCLS P+   +++RS  + VRY +   +      +
Sbjct: 64  ---GPVAVINPEILEASPETEIAEEGCLSFPEIFVEIERSKRVKVRYQNVRGEFVEEELE 120

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           G  A   QHE DHLNG+L ID +   KR ++ K++
Sbjct: 121 GYPARVFQHEFDHLNGVLIIDRIKPAKRLLLRKRL 155


>gi|319955771|ref|YP_004167034.1| peptide deformylase [Nitratifractor salsuginis DSM 16511]
 gi|319418175|gb|ADV45285.1| peptide deformylase [Nitratifractor salsuginis DSM 16511]
          Length = 177

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 101/168 (60%), Gaps = 10/168 (5%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---- 61
           +V++PD  L+ +S+P+E+ + ++  L+D+M E M + +G+GLAA+Q+ V  R ++I    
Sbjct: 5   IVVYPDKRLKEISQPVERFDEELHTLLDDMYETMIAKNGVGLAAIQVAVPVRALIINVPV 64

Query: 62  --DLQD---HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
             D +D      ++N +  INP +I  ++  + YQEGCLS+P Y  +V+R   + + Y D
Sbjct: 65  DTDSEDPRVQQPKENTLEVINP-VILDAEGKTRYQEGCLSVPGYFEEVERYKAVRIEYQD 123

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  I+  D  LA  +QHE+DHL G LFI+ LS LKR    K+  K
Sbjct: 124 RYGEKHILEDDDFLAIAVQHEMDHLEGRLFIEKLSLLKRKKFEKEWKK 171


>gi|94266527|ref|ZP_01290215.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93452856|gb|EAT03376.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 259

 Score =  122 bits (306), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 19/183 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  + P+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKAAPVTEFDDSLRALVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           I          D +D        A  +NP +V INP+++    +  V +EGCLS+ DY +
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            VKR A + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+
Sbjct: 191 KVKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250

Query: 163 SKL 165
            K+
Sbjct: 251 KKI 253


>gi|157165463|ref|YP_001465989.1| peptide deformylase [Campylobacter concisus 13826]
 gi|112801795|gb|EAT99139.1| peptide deformylase [Campylobacter concisus 13826]
          Length = 172

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 92/150 (61%), Gaps = 4/150 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P+  L  +S+ +E  +  +  L+D+M E M + +GIGLAA+QIGV  R+ +I+L +   
Sbjct: 8   YPNKKLYEISKEVEVFDEKLHKLLDDMYETMIAKEGIGLAAIQIGVAKRIFIINLANEEG 67

Query: 69  ---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              ++N +  INPK     +   VYQEGCLS+P Y  DVKRS  + +++ D   + Q + 
Sbjct: 68  VQDKENLIEIINPKF-ELREGECVYQEGCLSVPGYYEDVKRSEVVAIKFQDRFGKEQTLK 126

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            DGLLA  +QHE DHL+G LFI+ +   KR
Sbjct: 127 TDGLLAIAIQHENDHLDGHLFIEKIGFNKR 156


>gi|219669870|ref|YP_002460305.1| peptide deformylase [Desulfitobacterium hafniense DCB-2]
 gi|254767579|sp|B8FS81|DEF_DESHD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219540130|gb|ACL21869.1| peptide deformylase [Desulfitobacterium hafniense DCB-2]
          Length = 150

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 89/143 (62%), Gaps = 6/143 (4%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +LR  + P+++I  +I  L+DNML+ +Y  +G+GLAA Q+GV  R+VVID+ +      P
Sbjct: 13  VLREKAVPVKEITPNIAKLLDNMLDTLYDANGVGLAAPQVGVSKRVVVIDVGE-----GP 67

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +  INP II    +  +  EGCLSIP     V R+A + V  ++   + Q+I  +GLL+ 
Sbjct: 68  LELINPVIIAKEGE-DLDDEGCLSIPGITGQVARAAKVKVEALNRQGELQVIEGEGLLSR 126

Query: 133 CLQHELDHLNGILFIDHLSRLKR 155
           CLQHE+DHL GILF+D   +  R
Sbjct: 127 CLQHEIDHLEGILFVDKAKKTSR 149


>gi|255008473|ref|ZP_05280599.1| peptide deformylase [Bacteroides fragilis 3_1_12]
 gi|313146202|ref|ZP_07808395.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12]
 gi|313134969|gb|EFR52329.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12]
          Length = 184

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 99/168 (58%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+VVI+L 
Sbjct: 4   PIYVYGQPVLRQVAEDITPDYPNLKELIENMFETMDHADGVGLAAPQIGLPVRVVVINLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D+   K+    +IN  I     D    +EGCLS+P     VKR + I VRYMD N 
Sbjct: 64  VLSEDYPEYKDFRKAYINAHIDVVEGDEVSMEEGCLSLPGIHESVKRGSKIHVRYMDENF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++
Sbjct: 124 VEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLK 171


>gi|332878465|ref|ZP_08446186.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683560|gb|EGJ56436.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 185

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 100/169 (59%), Gaps = 6/169 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  F  P+LR+V+  I     ++  LIDNM E +  ++GIGLAA QIG+  RLVVI+L 
Sbjct: 4   PIYTFGQPVLRKVAEDITPDYPELKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVINLD 63

Query: 65  ----DHAHRKNPM-VFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
               D    K  +  FINP I+ + D +    +EGCLS+P     V+R   I V Y+D +
Sbjct: 64  LISDDLPEYKGFVHAFINPHILEYDDTETDSMEEGCLSLPGIHEPVRRPTRIRVSYLDED 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q    + +G LA  +QHE DHL+G +F+DHLS L++ M+  K+  L++
Sbjct: 124 FQPHDEWVEGYLARVMQHEFDHLDGKMFVDHLSMLRKQMVKGKLGNLLK 172


>gi|268589951|ref|ZP_06124172.1| peptide deformylase [Providencia rettgeri DSM 1131]
 gi|291314667|gb|EFE55120.1| peptide deformylase [Providencia rettgeri DSM 1131]
          Length = 169

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+    + +  LID++L+ MYSTD GIGLAA QI     ++
Sbjct: 1   MAVREIIEIPDERLRIKCSPVTDFAA-VQTLIDDLLDTMYSTDNGIGLAATQIAETKSIM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ ++  R  PMVF+NP+I+  S+  + YQEGCLS+P+  ADV R   + V+  D + 
Sbjct: 60  VIDISEN--RDEPMVFVNPEIVE-SEGETSYQEGCLSVPEIYADVDRFLRVKVKAYDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
           +   + +D  LA  +QHE+DHL+G +F+DHLS LKR+M
Sbjct: 117 KAFEVDSDEFLAIVMQHEIDHLHGKVFLDHLSPLKRNM 154


>gi|257791461|ref|YP_003182067.1| peptide deformylase [Eggerthella lenta DSM 2243]
 gi|257475358|gb|ACV55678.1| peptide deformylase [Eggerthella lenta DSM 2243]
          Length = 183

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 80/150 (53%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+PIL +V  P +  +  +  L   M + MY  DG GLAA Q+GV  RLVVID   
Sbjct: 7   IVQSPNPILNQVCDPCDLGDKSLKKLAKQMAKAMYKNDGCGLAAPQLGVAKRLVVIDCDQ 66

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               +NP+V +NP ++    D  V  EGCLS P     + R  F  VRY D + +   I 
Sbjct: 67  EEGEQNPIVLVNPVLVDTQGDPVVAGEGCLSCPGITVPIARPPFARVRYFDLDGEEWEIE 126

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            D LL  CLQHELDHL+GI   +    + R
Sbjct: 127 GDDLLGRCLQHELDHLDGITMFERCDPMAR 156


>gi|33357295|pdb|1LME|A Chain A, Crystal Structure Of Peptide Deformylase From Thermotoga
           Maritima
 gi|33357296|pdb|1LME|B Chain B, Crystal Structure Of Peptide Deformylase From Thermotoga
           Maritima
          Length = 176

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 93/155 (60%), Gaps = 5/155 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D+ +  
Sbjct: 18  VFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-- 75

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               P+  INP+I+    +  V +EG LS P+   +++RS  I V+Y +   ++     +
Sbjct: 76  ---GPVAVINPEILEIDPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELE 132

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           G  A   QHE DHLNG+L ID +S  KR ++ KK+
Sbjct: 133 GYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKL 167


>gi|308063423|gb|ADO05310.1| peptide deformylase [Helicobacter pylori Sat464]
          Length = 175

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  IL+ +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILKTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLIINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGTI-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|317151959|ref|YP_004120007.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942210|gb|ADU61261.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2]
          Length = 165

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 1/160 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +PD +L   + P+ +I  ++  LI++M+E MY  DG+GLAA Q+G   RL+ +D   
Sbjct: 5   ICTWPDDVLAARAEPVAEITPEMKKLINDMVETMYEGDGVGLAAPQVGESIRLICVDQTG 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R +  V INP+I+    +    +EGCLS P++   V R   + V  MD +     I 
Sbjct: 65  PKLRADLRVLINPEIVECDGEVE-SEEGCLSCPEFSGTVMRKERVKVTGMDPDGGPVCID 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            DG LA  LQHE+DHLNGI   D   RLK+ M  K+ +K 
Sbjct: 124 TDGFLAIVLQHEIDHLNGITIADRAGRLKKAMYRKRAAKW 163


>gi|91216549|ref|ZP_01253515.1| peptide deformylase [Psychroflexus torquis ATCC 700755]
 gi|91185343|gb|EAS71720.1| peptide deformylase [Psychroflexus torquis ATCC 700755]
          Length = 196

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  +  P+L++ +  I K +  I  L++NM E MY+  G+GLAA QIG+  RL ++D +
Sbjct: 4   PIAAYGSPVLKKKAEDISKDHPKIDELLENMFETMYNASGVGLAAPQIGLSIRLFIVDAK 63

Query: 65  DHAH-------RKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             +         KN +     VFINP+II  +     + EGCLSIPD   D+ R   ITV
Sbjct: 64  PFSEDESLSELEKNELEAFKRVFINPQIIEENGIEWDFNEGCLSIPDVHEDIFRKPEITV 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y+D N   Q     GL A  +QHE DH+ G+LF D +S LK+ +I  K++ + +
Sbjct: 124 EYLDENFTPQKEKLSGLAARVVQHEYDHIEGVLFTDRISSLKKRLIKNKLTNISK 178


>gi|209526681|ref|ZP_03275205.1| peptide deformylase [Arthrospira maxima CS-328]
 gi|209492917|gb|EDZ93248.1| peptide deformylase [Arthrospira maxima CS-328]
          Length = 187

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 87/140 (62%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ + +I+ +I  L+  ML+ MYS DGIGLAA Q+GV  +++VID +      
Sbjct: 24  DRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIVIDCEPDNAAT 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP I   S + S +QEGCLSIP    DV R   + V + D N + + I A  LL
Sbjct: 84  PPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGRPRSILATELL 143

Query: 131 ATCLQHELDHLNGILFIDHL 150
              +QHE+DHL G+LF+D +
Sbjct: 144 CRAIQHEIDHLQGVLFVDRV 163


>gi|307150582|ref|YP_003885966.1| peptide deformylase [Cyanothece sp. PCC 7822]
 gi|306980810|gb|ADN12691.1| peptide deformylase [Cyanothece sp. PCC 7822]
          Length = 187

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 88/141 (62%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I K++  +  L   ML+ MYS +GIGLAA Q+ V  +L+V+D +      
Sbjct: 24  DRVLRQPAKRIAKVDDAVRQLAKEMLQTMYSANGIGLAAPQVAVNKQLLVVDCEPDNATN 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+I  FS D   ++EGCLSIP    DV R   I V + D + + + + A GLL
Sbjct: 84  QPIILINPQITHFSRDLCQFEEGCLSIPGVYLDVVRPKAIEVSFKDESGRPKKLKATGLL 143

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  +QHE+DHLNG++F+D + 
Sbjct: 144 ARVIQHEMDHLNGVMFVDRVG 164


>gi|238019378|ref|ZP_04599804.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748]
 gi|237864077|gb|EEP65367.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748]
          Length = 162

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 92/143 (64%), Gaps = 4/143 (2%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           P+L++++ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V+D  DHA    
Sbjct: 12  PVLKQIAEPVEHVNKKLRALIDDMAETMYETEGVGLAAPQVAVSKRIIVVD--DHA-GSG 68

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  INP+I T ++   V  EGCLS+P Y  DV+R   ITV+ +D + +   I A+G LA
Sbjct: 69  LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFDKITVKGIDPHNKKVTIKAEGFLA 127

Query: 132 TCLQHELDHLNGILFIDHLSRLK 154
              QHE+DHL G LFI+  + L+
Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLR 150


>gi|224060121|ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
 gi|222847305|gb|EEE84852.1| peptide deformylase [Populus trichocarpa]
          Length = 258

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 90/160 (56%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++  L+D M +VMY TDGIGL+A Q+G+  +L+V +  D
Sbjct: 69  IVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPAD 128

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                + +V +NP++  +S    ++ EGCLS P   ADVKR   + +   D N     + 
Sbjct: 129 EHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKIDARDINGARFTVN 188

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             GL A   QHE DHL GILF D ++    D I   +  L
Sbjct: 189 LSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQAL 228


>gi|269926311|ref|YP_003322934.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789971|gb|ACZ42112.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798]
          Length = 203

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 97/150 (64%), Gaps = 12/150 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-----QDHA 67
           +LR+ S P+ K +S++  L+++M+E M   DG+GL+AVQ+G L R+VV+++     QD  
Sbjct: 17  VLRKRSSPVTKFDSELRKLVEDMIETMREADGVGLSAVQVGDLRRVVVMEMPGKYEQDED 76

Query: 68  HRK---NP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA-Q 120
             +   +P    V INP+I   S D    QEGCLS+P   A+V R+ ++ VRY D N  +
Sbjct: 77  GNQIEVSPPKLYVMINPEITKVSHDRIPMQEGCLSLPGRYAEVPRAPWVEVRYKDLNGKE 136

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
           H+++  + LL+ C+QHE+DHL+GILF + +
Sbjct: 137 HKLLAEEQLLSQCIQHEVDHLDGILFTERI 166


>gi|303256332|ref|ZP_07342348.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
 gi|330999027|ref|ZP_08322752.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
 gi|302861061|gb|EFL84136.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
 gi|329575769|gb|EGG57295.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
          Length = 175

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L   +  + + +  +  L  +M E MY   G+GLAA Q+    RL+VID+ 
Sbjct: 5   PILKYPDPRLATKAAVVTEFDDKLKQLAADMAETMYKAPGVGLAATQVDRHIRLIVIDIT 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   + +  V +NP+++  S++   ++EGCLS+P     V R A + V+  D       +
Sbjct: 65  EE--KNDLKVLVNPELVESSEETKPWEEGCLSLPGIYDKVTRPAKVKVKAQDLEGNFFEL 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             DGLLA C+QHE+DHL G +F+DHLS LK+  I  K+ K+
Sbjct: 123 ECDGLLAVCVQHEMDHLEGTVFVDHLSMLKKQRIRHKIRKM 163


>gi|182420425|ref|ZP_02951645.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237667734|ref|ZP_04527718.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375711|gb|EDT73311.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237656082|gb|EEP53638.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 146

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 91/144 (63%), Gaps = 6/144 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+  R +E+I+  ++ LI +MLE MY  DG+GLAA Q+G+L RL VID+ D   
Sbjct: 9   YGDDVLRKECREVEEIDKRLLVLIKDMLETMYDADGVGLAAPQVGILKRLFVIDIGD--- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+VFINP+II  S    + +EGCLS+P    +V R  ++  R ++   Q   I A+ 
Sbjct: 66  --GPLVFINPEIIETSGK-QIDEEGCLSLPGKMEEVMRPNYVRARALNEKGQEFEIEAEE 122

Query: 129 LLATCLQHELDHLNGILFIDHLSR 152
           LLA  + HE DHLNG LFID +++
Sbjct: 123 LLARAILHEYDHLNGTLFIDRVNK 146


>gi|294055692|ref|YP_003549350.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221]
 gi|293615025|gb|ADE55180.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221]
          Length = 193

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 20/178 (11%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + +PILR V  P+ + N ++  L ++M+E MY+ +GIGLAA QI    ++ V+D++    
Sbjct: 8   YGEPILREVGAPVTEFNPELKQLAEDMIETMYAEEGIGLAAQQIDKALQICVVDVRPPEG 67

Query: 69  RK-----------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            +                  PM  INPK+    D   VY+EGCLS PD R  V R   + 
Sbjct: 68  AEVPYNYSFDGRQPPLDLIMPMAIINPKVTIIDDTEDVYEEGCLSFPDVRGRVHRPIGVR 127

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + D      II ADGLL  C+ HE+DHLNG LFID +   KRD+  K  +++ +L+
Sbjct: 128 CEFQDTEGNPHIIEADGLLGRCILHEVDHLNGELFIDLME--KRDL-RKNETRIKKLK 182


>gi|152989916|ref|YP_001355638.1| peptide deformylase [Nitratiruptor sp. SB155-2]
 gi|151421777|dbj|BAF69281.1| formylmethionine deformylase [Nitratiruptor sp. SB155-2]
          Length = 176

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 93/150 (62%), Gaps = 4/150 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +PD  L   S+ +E  + ++  L+D+M E M + +GIGLAA+Q+ V  R ++I+L
Sbjct: 3   RQIITYPDKRLFLRSKEVENFDEELQTLLDDMYETMVAKNGIGLAAIQVAVPLRALIINL 62

Query: 64  QDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D     H+++ +  INP +I       VY EGCLS+PDY  DV+R+ ++ V Y D    
Sbjct: 63  PDEEGKQHKEDLLELINP-VIVEKKGTQVYTEGCLSVPDYYDDVERAEWVKVEYQDRYGN 121

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + +  DGLLA  +QHE+DHL+G LFI+ L
Sbjct: 122 KKTLETDGLLAVAVQHEMDHLDGHLFIEKL 151


>gi|134299448|ref|YP_001112944.1| peptide deformylase [Desulfotomaculum reducens MI-1]
 gi|134052148|gb|ABO50119.1| peptide deformylase [Desulfotomaculum reducens MI-1]
          Length = 172

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 93/142 (65%), Gaps = 7/142 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP LR+V +P+ +I  +I+ L+++M + + +T +G  LAA Q+G L R+VVIDL +    
Sbjct: 11  DPALRKVCKPVCEITPNILQLLNDMADTLRATPNGAALAAPQVGFLRRVVVIDLGNEK-- 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +  INP+II  S +  V  EGCLS+P     VKRS F+ V+ M+   +  ++   GL
Sbjct: 69  ---IELINPEIIEKSGE-QVGSEGCLSLPGIWGRVKRSKFVKVKAMNREGEEILVEGKGL 124

Query: 130 LATCLQHELDHLNGILFIDHLS 151
           LA CLQHE+DHL+GIL+IDH++
Sbjct: 125 LARCLQHEIDHLDGILYIDHVA 146


>gi|158421732|ref|YP_001523024.1| peptide deformylase [Azorhizobium caulinodans ORS 571]
 gi|158328621|dbj|BAF86106.1| polypeptide deformylase [Azorhizobium caulinodans ORS 571]
          Length = 165

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 96/162 (59%), Gaps = 4/162 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           LV FPDP LR+ + P+   +  + +   ++L+ M +  GIG+     G++ RLV ++L +
Sbjct: 6   LVRFPDPRLRQPAEPVTVFDGALADRAQDLLDTMRAAPGIGITGPHAGLMIRLVALELPE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P  ++NP+++  S +   + EG +S+P    +V+R A + V +   +     + 
Sbjct: 66  TA----PAFYVNPRVLRASPEMGRHPEGSVSMPGVVEEVERPARVRVAFQGLDGTGHEVE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           ADGLL+ CLQHE+D L+GI +I  LSRLKR+ + KK  KL++
Sbjct: 122 ADGLLSVCLQHEIDQLDGIFWIQRLSRLKRERVVKKYEKLLK 163


>gi|323344260|ref|ZP_08084486.1| peptide deformylase [Prevotella oralis ATCC 33269]
 gi|323094989|gb|EFZ37564.1| peptide deformylase [Prevotella oralis ATCC 33269]
          Length = 187

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 7/170 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ I+  P+LR+V++ I     D+  LI +M E + ++DG+GLAA QIG   R+ VIDL 
Sbjct: 4   PIYIYGQPVLRKVAKDITPDYPDLEELIKDMFETLTASDGVGLAAPQIGKSIRVAVIDLD 63

Query: 64  ----QDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               +   ++     +INP II   D+    + +EGCLSIP     V R + I V+YMD 
Sbjct: 64  VLSGELPEYKDFRKAYINPHIIEIDDNSKKEIMEEGCLSIPGIHESVTRPSRIHVQYMDT 123

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  + DG LA  +QHE DHL+G +F+D LS  ++ M+  K+  L+Q
Sbjct: 124 AFVQHDEWVDGYLARVMQHEFDHLDGTMFVDRLSPFRKQMVNSKLKALIQ 173


>gi|86137256|ref|ZP_01055834.1| peptide deformylase [Roseobacter sp. MED193]
 gi|85826580|gb|EAQ46777.1| peptide deformylase [Roseobacter sp. MED193]
          Length = 165

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +I  +  +M+E M +  G+GL A QIGV+ RL V
Sbjct: 1   MTARTCLPWPDKRLRTAATEVSEITDEIRAIWTDMIETMEAMPGVGLGANQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+++  S     ++E   ++P   A +KR   +TVRYMD N +
Sbjct: 61  VD--GSRERGKAVRMANPEVLHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118

Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             I   D  G+ AT +QH++DHLNG LF DHLS++KRDM+ KK  KL
Sbjct: 119 --ITERDFVGIEATSVQHQIDHLNGKLFFDHLSKVKRDMLIKKSKKL 163


>gi|255323209|ref|ZP_05364344.1| peptide deformylase [Campylobacter showae RM3277]
 gi|255299732|gb|EET79014.1| peptide deformylase [Campylobacter showae RM3277]
          Length = 170

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 99/164 (60%), Gaps = 5/164 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++ +P+  L   S  ++  + ++   +D+M E M + +GIGLAA+Q G   R+++I+L 
Sbjct: 4   EILTYPNKKLFVKSLEVKAFDENLHKFLDDMYETMIAKNGIGLAAIQTGEAKRILIINLV 63

Query: 65  DHA---HRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D      RK  ++  INPKI+    +  +YQEGCLS+P Y  DVKR+ FIT+ Y D   +
Sbjct: 64  DEESKEQRKEDLLEIINPKILRKEGEI-IYQEGCLSVPGYYEDVKRAEFITLEYQDRFGE 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + + ADGLL+  +QHE+DHL+G LFI+ +   KR    K+  K
Sbjct: 123 RKELEADGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKK 166


>gi|218960357|ref|YP_001740132.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans]
 gi|167729014|emb|CAO79925.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans]
          Length = 186

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 97/163 (59%), Gaps = 3/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++ D  LR+    I+     +   I++++  MY+ DGIG+AA Q+G  YR++VID +
Sbjct: 9   PVRLYGDDFLRKKLPEIDYNTPGLPEFIEDLIYTMYARDGIGIAANQVGSFYRMIVIDPE 68

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             +  ++K+P+V INP +I   +   VY+EGC+S+PD  ADV RS  IT  Y D      
Sbjct: 69  QDNKLNKKSPIVMINP-VIENKEGEVVYEEGCISLPDIFADVSRSKKITYSYTDRMGNRI 127

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              A+ + A  +QHE DHL GILFIDHL  L R  I  K+ KL
Sbjct: 128 TETAEEIKAVVIQHEFDHLEGILFIDHLGTLDRLKIMHKLKKL 170


>gi|255037799|ref|YP_003088420.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
 gi|254950555|gb|ACT95255.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
          Length = 194

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 102/177 (57%), Gaps = 15/177 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DPILR+ +R IEK   D+  L ++M E M+  +G+GLAA QIG+  R+ V+D  
Sbjct: 4   PIVAYGDPILRKPTRFIEKDEVDLKKLSEDMFETMHGANGVGLAAPQIGLNIRIFVVDGT 63

Query: 65  DHAHRKN-------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
             A R                  FINP+I+  + +   ++EGCLSIP  R DV R   + 
Sbjct: 64  PFAERDEDDDDEPDLSLVDFKKTFINPEILEETGEEWGFEEGCLSIPGIRGDVYRPETLR 123

Query: 112 VRYMDCNA-QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +RY D +  +H+  Y+ G+ A  +QHE DHL G LF+D+L  LK+  I KK++ + +
Sbjct: 124 IRYRDLDWNEHEETYS-GMAARIIQHEYDHLLGKLFVDYLPTLKKQFIKKKLTDISK 179


>gi|300774181|ref|ZP_07084049.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758992|gb|EFK55820.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 192

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 8/174 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+LR+ +  I++   +I  LI NM + MY+  G+GLAA QIG+  R+ VI
Sbjct: 1   MKLPIVAYGDPVLRKKTIEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLPIRVFVI 60

Query: 62  DL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           D         +D + +    VFINP I+  + +   + EGCLSIPD   +V R A + + 
Sbjct: 61  DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Y+D N +   I   GL A  +QHE DHL G LF D L  LK+ M+  K+  + +
Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISK 174


>gi|158320460|ref|YP_001512967.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
 gi|158140659|gb|ABW18971.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
          Length = 147

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 88/142 (61%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR++S+P++ I+  I+ L+D+M+E MY  DG+GLAA Q+G+L R++VID+ +     
Sbjct: 11  DPVLRKISKPVDTIDDKIITLLDDMIETMYDADGVGLAAPQVGILKRVIVIDIGEGV--- 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+II   D      EGCLS+P    +V R   + V+  D      I+  + LL
Sbjct: 68  --IELINPEIIA-EDGVQCDNEGCLSLPGITEEVARPRTVKVKGFDRFGNEMIVEGEELL 124

Query: 131 ATCLQHELDHLNGILFIDHLSR 152
           A  L HE+DHLNGILFID   +
Sbjct: 125 ARALCHEIDHLNGILFIDRAEK 146


>gi|329926582|ref|ZP_08280995.1| peptide deformylase [Paenibacillus sp. HGF5]
 gi|328939123|gb|EGG35486.1| peptide deformylase [Paenibacillus sp. HGF5]
          Length = 164

 Score =  121 bits (303), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 4/148 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  PD +L + ++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+VID  D
Sbjct: 6   IVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIVIDAGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  INP+I+  S+      EGCLSIP +  DV+R+  +TV+ +D      +I 
Sbjct: 66  E---HGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGNELVIT 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153
             GLLA   QHE+DHLNG+LF +   R+
Sbjct: 122 GTGLLARAFQHEIDHLNGVLFTEIADRV 149


>gi|282850137|ref|ZP_06259516.1| peptide deformylase [Veillonella parvula ATCC 17745]
 gi|282579630|gb|EFB85034.1| peptide deformylase [Veillonella parvula ATCC 17745]
          Length = 162

 Score =  121 bits (303), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 91/143 (63%), Gaps = 4/143 (2%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           P+L++V+ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V+D Q  +    
Sbjct: 12  PVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVAKRIIVVDDQSGS---G 68

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  INP+I T ++   V  EGCLS+P Y  DV+R   +TV+ +D + +   I A+G LA
Sbjct: 69  LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFNKVTVKGIDPHNKKVTIKAEGFLA 127

Query: 132 TCLQHELDHLNGILFIDHLSRLK 154
              QHE+DHL G LFI+  + L+
Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLR 150


>gi|284929247|ref|YP_003421769.1| peptide deformylase [cyanobacterium UCYN-A]
 gi|284809691|gb|ADB95388.1| peptide deformylase [cyanobacterium UCYN-A]
          Length = 183

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 1/154 (0%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D  LR+ ++ + KI+  I  L  +ML+ MYS++GIGLA+ Q+G+  +L+VID +      
Sbjct: 20  DKDLRKSAKRVSKIDDSIRELARDMLQTMYSSNGIGLASTQVGIHKQLIVIDCEPELSTN 79

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INPKI  +S +  V +EGCLSIP    DV R   I V + + N +   I A  LL
Sbjct: 80  APLILINPKINYYSQELCVMEEGCLSIPGVYFDVIRPEMIQVSFKNENGRPCQISATDLL 139

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A  +QHE+DHLNG++F+D ++    D+ TK   K
Sbjct: 140 ARVIQHEIDHLNGVMFVDRVTN-DLDLTTKLQEK 172


>gi|307322251|ref|ZP_07601618.1| peptide deformylase [Sinorhizobium meliloti AK83]
 gi|306892102|gb|EFN22921.1| peptide deformylase [Sinorhizobium meliloti AK83]
          Length = 172

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP P+L   +  I +    +  L D++++ M +  GIG+ A  IG+L RL V
Sbjct: 1   MAVRPIIRFPSPLLTTSAERIGRFGGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I++        P  F+NP+I+  S + + + EG +S+P    +V+R   + + +   + +
Sbjct: 61  IEVDPQM---GPRSFVNPEIVWQSSETARHSEGSVSMPGVAEEVERPVRVRISFQTLDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +   A+GL+A CLQHE+D LNGI +I  LSRLKR+   K+  K 
Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKF 162


>gi|261405798|ref|YP_003242039.1| peptide deformylase [Paenibacillus sp. Y412MC10]
 gi|261282261|gb|ACX64232.1| peptide deformylase [Paenibacillus sp. Y412MC10]
          Length = 164

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 4/148 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  PD +L + ++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+VID  D
Sbjct: 6   IVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIVIDAGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  INP+I+  S+      EGCLSIP +  DV+R+  +TV+ +D      +I 
Sbjct: 66  E---HGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGNELVIT 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153
             GLLA   QHE+DHLNG+LF +   R+
Sbjct: 122 GTGLLARAFQHEIDHLNGVLFTEIADRV 149


>gi|126661353|ref|ZP_01732418.1| peptide deformylase [Cyanothece sp. CCY0110]
 gi|126617360|gb|EAZ88164.1| peptide deformylase [Cyanothece sp. CCY0110]
          Length = 187

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 96/158 (60%), Gaps = 4/158 (2%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +  D  LR+ ++ I K++  I  L   ML+ MYS+ GIGLAA Q+ +  +L+VID +   
Sbjct: 21  VLGDRALRQPAKRITKVDDSIRKLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDCEPDN 80

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               P++ INPKI   S++  V +EGCLSIP    DV R   I V + D   + + I A 
Sbjct: 81  PENPPLILINPKITRVSEELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRKIQAT 140

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDM-ITKKMSK 164
            LLA  +QHE+DHLNG++F+D   R++ D+ +T+K+ +
Sbjct: 141 DLLARVIQHEMDHLNGVMFVD---RVENDLALTEKLQE 175


>gi|224369791|ref|YP_002603955.1| Def [Desulfobacterium autotrophicum HRM2]
 gi|259645178|sp|C0QI55|DEF_DESAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|223692508|gb|ACN15791.1| Def [Desulfobacterium autotrophicum HRM2]
          Length = 174

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 5/161 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P  +L + +  +E I+  ++ L+++M E M+   G+GLAA Q+G   R++V + Q  + 
Sbjct: 9   YPAAVLLKKALQVETIDDTVIKLVNDMGETMFEAPGVGLAAPQVGQSRRIIVYNPQAGSS 68

Query: 69  RKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             N         INP+II  S       E CLS+PDY  +VKR   +TVR ++   +   
Sbjct: 69  NANEDTKEFKALINPEIIASSGSIVSENEACLSVPDYSCNVKRFETVTVRGLNLEGKKLE 128

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             A GLLA  +QHE+DHL+GIL+ID +S LKR+M  KK+ K
Sbjct: 129 FDAQGLLAVIMQHEIDHLDGILYIDRISTLKRNMYKKKVRK 169


>gi|167752475|ref|ZP_02424602.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216]
 gi|167659544|gb|EDS03674.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216]
          Length = 181

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 5/170 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+V+F  P+LR   R I     ++  LI++M   +   +G+GLAA QIG   RL ++D  
Sbjct: 4   PIVVFGAPVLREKCREIGPDYPEVKKLIEDMFLTLEEAEGVGLAAPQIGKSIRLFIVDCT 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +DH    +    FINP+I   S++  +Y+EGCLS+P     V+RS  I +RY+D N 
Sbjct: 64  PWGEDHPELADYRRAFINPEIYEVSEETKLYEEGCLSLPGLHESVRRSLAIRMRYLDENF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +       GL A  +QHE DHL G++F D LS L+R++I  K+  L + R
Sbjct: 124 EPHDEEFTGLPAWVIQHEYDHLEGVVFTDRLSPLRRNLIKSKLMSLTKGR 173


>gi|298491536|ref|YP_003721713.1| peptide deformylase ['Nostoc azollae' 0708]
 gi|298233454|gb|ADI64590.1| peptide deformylase ['Nostoc azollae' 0708]
          Length = 187

 Score =  120 bits (302), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 86/141 (60%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ + KI+ ++  L+  ML+ MYS DGIGLAA Q+G+  +L+VID +      
Sbjct: 24  DRVLRQPAKRVTKIDDELRQLVREMLQTMYSEDGIGLAAPQVGINKQLIVIDCEPDKPEA 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +V INP I   S +  V +EGCLSIP    DVKR   + + Y D   + + + A  LL
Sbjct: 84  PALVLINPVIKQVSSELCVAEEGCLSIPKVYLDVKRPQVVEIAYKDEYGRPKTLKAGDLL 143

Query: 131 ATCLQHELDHLNGILFIDHLS 151
             C+ HE+DHLNG+LF+D + 
Sbjct: 144 GRCILHEMDHLNGVLFVDRVE 164


>gi|303228554|ref|ZP_07315382.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516801|gb|EFL58715.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a]
          Length = 162

 Score =  120 bits (302), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 92/144 (63%), Gaps = 4/144 (2%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           PIL+ V+ P+E +N  +  LI++M + MY T+G+GLAA Q+ V  R++V+D  DHA    
Sbjct: 12  PILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIVVD--DHA-GSG 68

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  INP+II   +   +  EGCLS+P Y  DV+R   +TV+ +D + +  +I ADG LA
Sbjct: 69  LIALINPEII-HGEGSQIGLEGCLSVPGYFGDVERFEKVTVKGIDPHNKKVMIKADGFLA 127

Query: 132 TCLQHELDHLNGILFIDHLSRLKR 155
              QHE+DHL G LFI+  + L+R
Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLRR 151


>gi|317121756|ref|YP_004101759.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM
           12885]
 gi|315591736|gb|ADU51032.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM
           12885]
          Length = 550

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/143 (40%), Positives = 90/143 (62%), Gaps = 5/143 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +P+LR  ++P+ K+N ++  L+D M   MY+ DGIGLAA Q+GV  R+VV+D+ D     
Sbjct: 31  EPVLRTPAQPVAKVNREVRQLLDRMAATMYAADGIGLAAPQVGVSKRIVVVDVGD----- 85

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+   ++     EGCLS+P   A+V+R A + V  +D + +   I  +GLL
Sbjct: 86  GLIELINPEIVRRGEETETAYEGCLSLPRLLAEVERPATVQVTALDRHGRRIWIEGEGLL 145

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A CLQHE+DHL+G+L  D   ++
Sbjct: 146 ARCLQHEIDHLDGVLITDRARKV 168


>gi|78044307|ref|YP_360316.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123743168|sp|Q3AC18|DEF_CARHZ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|77996422|gb|ABB15321.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 152

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 95/145 (65%), Gaps = 6/145 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPIL+ +++PI++I  +I+ L++NM + MY+ +G+GLAA QIGV  R +V+D+ +     
Sbjct: 11  DPILKEIAKPIKEITPNIIKLLENMADTMYAYNGVGLAAPQIGVSKRAIVVDVGEGL--- 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+II  S +     EGCLS+P  + +V R+  +TV+ ++   +  +I A+GLL
Sbjct: 68  --IELINPEIIEVSGEEKDI-EGCLSVPGVQGEVVRAKKVTVKGLNRYGEEIVIPAEGLL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRLKR 155
           A   QHE+DHLNGILF++    + R
Sbjct: 125 ARAFQHEIDHLNGILFVEKADNIVR 149


>gi|330995383|ref|ZP_08319293.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841]
 gi|329575878|gb|EGG57402.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841]
          Length = 185

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 99/169 (58%), Gaps = 6/169 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  F  P+LR+V+  I     ++  LIDNM E +  ++GIGLAA QIG+  RLVVI+L 
Sbjct: 4   PIYTFGQPVLRKVAEDITPDYPELKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVINLD 63

Query: 65  ----DHAHRKNPM-VFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
               D    K  +  FINP I+ + D +    +EGCLS+P     V+R   I V Y+D  
Sbjct: 64  LISDDLPEYKGFVHAFINPHILEYDDAETDSMEEGCLSLPGIHEPVRRPTRIRVSYLDEV 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q    + +G LA  +QHE DHL+G +F+DHLS L++ M+  K+  L++
Sbjct: 124 FQPHDEWVEGYLARVMQHEFDHLDGKMFVDHLSMLRKQMVKGKLGNLLK 172


>gi|198275233|ref|ZP_03207764.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135]
 gi|198271816|gb|EDY96086.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135]
          Length = 184

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 5/167 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+ ++ I      +  LI NM E M   DG+GLAA QIG+  R+VV++L 
Sbjct: 4   PIYVYGQPVLRQEAQDITPDYPGLKELITNMFETMDRADGVGLAAPQIGLPIRVVVVNLD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               D    K+    +INP I+    +    +EGCLS+P     VKR   I V Y+D N 
Sbjct: 64  VLSDDMPEFKDFKRTYINPHILETGGELVSMEEGCLSLPGIHESVKRPDKIHVTYLDENM 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Q    + +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +V
Sbjct: 124 QPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIRGKLNSMV 170


>gi|251797740|ref|YP_003012471.1| peptide deformylase [Paenibacillus sp. JDR-2]
 gi|247545366|gb|ACT02385.1| peptide deformylase [Paenibacillus sp. JDR-2]
          Length = 161

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 86/148 (58%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LR  ++ + K NS++  L+ +M E MY  DG+GLAA QIG+  R++V
Sbjct: 1   MAIRIIVKEPDPVLRETAKEVTKFNSNLQKLLKDMAETMYDADGVGLAAPQIGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  +NP +I  ++   V  EGCLSIP+   DVKR   I +   D    
Sbjct: 61  VDIGDETGL---ISMVNP-VIVENEGEQVGPEGCLSIPNLNGDVKRYERIVINGQDGEGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              + A G LA   QHE+DHLNGILF D
Sbjct: 117 PFTVEASGFLAVAFQHEIDHLNGILFTD 144


>gi|332521217|ref|ZP_08397675.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4]
 gi|332043310|gb|EGI79507.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4]
          Length = 196

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 95/170 (55%), Gaps = 12/170 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P+V + DP+L+  ++ I+K   ++  LI NM E M+   G+GLAA QIG+  R+ ++D  
Sbjct: 4   PIVAYGDPVLKVKAKEIDKDYPNLKELITNMQETMHGAYGVGLAAPQIGLPIRMFLVDAS 63

Query: 63  -------LQD--HAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  L+D   A  KN    FINP I+  S D   + EGCLSIPD R DV R   I V
Sbjct: 64  PFADDDVLEDDERAFLKNFKHTFINPTILEESGDEWAFNEGCLSIPDVREDVFRKPNIKV 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            Y D + +   +   GL A   QHE DH+ GILF D LS LK+ +I  K+
Sbjct: 124 EYFDEDFKKHTMELSGLAARVFQHEYDHIEGILFTDKLSSLKKRLIKGKL 173


>gi|160883802|ref|ZP_02064805.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483]
 gi|260170792|ref|ZP_05757204.1| peptide deformylase [Bacteroides sp. D2]
 gi|293372830|ref|ZP_06619208.1| peptide deformylase [Bacteroides ovatus SD CMC 3f]
 gi|299149164|ref|ZP_07042225.1| peptide deformylase [Bacteroides sp. 3_1_23]
 gi|315919126|ref|ZP_07915366.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110887|gb|EDO12632.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483]
 gi|292632205|gb|EFF50805.1| peptide deformylase [Bacteroides ovatus SD CMC 3f]
 gi|298512831|gb|EFI36719.1| peptide deformylase [Bacteroides sp. 3_1_23]
 gi|313693001|gb|EFS29836.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 184

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+V I L 
Sbjct: 4   PIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTITLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +++   K+    +INP I+    +    +EGCLS+P     VKR   I V+YMD N 
Sbjct: 64  PLSEEYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMDENF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++
Sbjct: 124 VEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLK 171


>gi|282890597|ref|ZP_06299120.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499594|gb|EFB41890.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 177

 Score =  120 bits (302), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 92/158 (58%), Gaps = 5/158 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           L  + +PILR+ + PIE+I+  I  L  +M+E M++T+GIGLAA QIG L  + V  +  
Sbjct: 5   LAYYGNPILRKKAIPIERIDDSIRQLATDMIETMHATNGIGLAANQIGQLLSIFVTCVPI 64

Query: 64  -QDHAHR--KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            QD          VFINPKI+ +S +F V+ EGCLSIP   +DV R   I ++ MD +  
Sbjct: 65  AQDDGTWIDGKDRVFINPKILAYSQEFQVFSEGCLSIPKLFSDVARPESIKIQAMDLDGN 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                  G  AT   HE DHLNG+LFID L R +R  I
Sbjct: 125 VFEETMTGYEATNFMHENDHLNGVLFIDRLHRTERKKI 162


>gi|118443183|ref|YP_878318.1| peptide deformylase [Clostridium novyi NT]
 gi|118133639|gb|ABK60683.1| peptide deformylase [Clostridium novyi NT]
          Length = 150

 Score =  120 bits (302), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  R +E+IN  I+ LI++M E MY  DG+GLAA Q+G+L RLVV
Sbjct: 1   MALRNIRVEEDSILRKKCREVEEINDRILTLIEDMKETMYEADGVGLAAPQVGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II      + Y EGCLS+P  +  V R   +T + ++   +
Sbjct: 61  IDVGE-----GPITLINPEIIESEGSQTDY-EGCLSLPGKQGKVTRPYKVTAKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              I  +GLLA  + HELDHL+G LFID +
Sbjct: 115 PVEIKGEGLLARAICHELDHLDGTLFIDKV 144


>gi|28210907|ref|NP_781851.1| peptide deformylase [Clostridium tetani E88]
 gi|39930881|sp|Q895Q2|DEF_CLOTE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28203346|gb|AAO35788.1| polypeptide deformylase [Clostridium tetani E88]
          Length = 150

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 96/154 (62%), Gaps = 6/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    D +LR+ SR +EKI+  I  L+D+ML+ MY  +G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRNLRFLGDELLRKKSRRVEKIDDRIQALLDDMLDTMYENNGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II     + + QEGCLS+P  + +V+R   + V+  + + +
Sbjct: 61  IDIGE-----GPLFLINPEIIEQEGSY-IEQEGCLSVPGRQGEVERPYRVKVKAQNRDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             I+  +  LA  L HE+DHLNG+LF+D +  +K
Sbjct: 115 EIIVEGEEFLAKALCHEIDHLNGVLFVDKIIDVK 148


>gi|83273759|ref|XP_729539.1| polypeptide deformylase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487628|gb|EAA21104.1| polypeptide deformylase, putative [Plasmodium yoelii yoelii]
          Length = 236

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 97/163 (59%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +VI+P+ ILR+ S  +   + ++ NLI  M + MY   GIGL+A Q+ +  R++V + L 
Sbjct: 62  IVIYPNSILRQKSEEVIYFDDNLKNLIRRMFKAMYENKGIGLSAPQVNISKRIIVWNALY 121

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +    KN  VFINP I+  S   +   EGCLS P+  A V+R A +++ Y D N    + 
Sbjct: 122 EKRDEKNERVFINPLIVQESAVKNKLIEGCLSFPNIEAKVERPAIVSISYYDINGNKHLK 181

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ A   QHE DHLNG+LFID +++ ++  I  K+++LV+
Sbjct: 182 ILKGIHARVFQHEYDHLNGVLFIDRITQTEKQKIKGKLNELVR 224


>gi|30249917|ref|NP_841987.1| formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
 gi|39931083|sp|Q82TC8|DEF2_NITEU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|30180954|emb|CAD85881.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
          Length = 185

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +++  +  I  +I  L+ NM E MY+  GIGLAA Q+ V  R++VID+ +   
Sbjct: 26  YPDERLHKIATEVPSITREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIVIDVSET-- 83

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+II  S +    QEGCLS+P     V R+  +TVR    + +   + A G
Sbjct: 84  RDELLVLINPEIIASSGNAET-QEGCLSVPGIFDKVTRAEEVTVRATGIDGKSFEMDASG 142

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS  K+  I  K+ K
Sbjct: 143 LLAVCIQHEMDHLMGKVFVEYLSPFKQSRILSKLKK 178


>gi|18310726|ref|NP_562660.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110802372|ref|YP_699030.1| peptide deformylase [Clostridium perfringens SM101]
 gi|23396559|sp|Q8XJL2|DEF1_CLOPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|18145407|dbj|BAB81450.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110682873|gb|ABG86243.1| peptide deformylase [Clostridium perfringens SM101]
          Length = 147

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 89/139 (64%), Gaps = 4/139 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+  R ++ IN  I  L+++M+E MY  +G+GLA+ Q+G+L R+ V+D  D A  +
Sbjct: 11  DEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLASPQVGILKRIFVVDAMDGAGSR 70

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              VFINP+I+  S +    +EGCLS+P     VKR+  I ++ +D N    ++ A+G L
Sbjct: 71  ---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEGFL 126

Query: 131 ATCLQHELDHLNGILFIDH 149
           A  +QHE DHL G+LFIDH
Sbjct: 127 ARAIQHEYDHLEGVLFIDH 145


>gi|282881719|ref|ZP_06290382.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1]
 gi|281304478|gb|EFA96575.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1]
          Length = 187

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 7/170 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ I+  P+LR+V++ I     ++  LI +M E M ++DG+GLAA QIG   R+VVIDL 
Sbjct: 4   PIYIYGQPVLRKVAQDITPAYENLQQLIADMFETMDASDGVGLAAPQIGKSIRVVVIDLN 63

Query: 64  ----QDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               +   ++     +INP II   +D   S  +EGCLSIP     V R   I V+YMD 
Sbjct: 64  VLSDELPEYKDFRRAYINPHIIEIDEDSPVSTMEEGCLSIPGIHESVTRHTRIRVQYMDS 123

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + Q    + +G LA  +QHE DHL G +F+D +S  ++ +I  K+  + Q
Sbjct: 124 DFQPHDEWVEGYLARVMQHEFDHLEGKMFVDRVSPFRKQLIKNKLKAMTQ 173


>gi|255656564|ref|ZP_05401973.1| peptide deformylase 2 [Clostridium difficile QCD-23m63]
 gi|296449984|ref|ZP_06891748.1| peptide deformylase [Clostridium difficile NAP08]
 gi|296878365|ref|ZP_06902373.1| peptide deformylase [Clostridium difficile NAP07]
 gi|296261254|gb|EFH08085.1| peptide deformylase [Clostridium difficile NAP08]
 gi|296430663|gb|EFH16502.1| peptide deformylase [Clostridium difficile NAP07]
          Length = 146

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 96/152 (63%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +EKI+  I+ L+D+M E MY  DG+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II  S +  + +EGCLS+     +V+R  ++ VR ++ N +
Sbjct: 61  IDIGEEL-----IELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  + LLA    HELDHL+GILF+D + +
Sbjct: 115 TIELEGEELLARAFCHELDHLDGILFVDKIEK 146


>gi|269797908|ref|YP_003311808.1| peptide deformylase [Veillonella parvula DSM 2008]
 gi|269094537|gb|ACZ24528.1| peptide deformylase [Veillonella parvula DSM 2008]
          Length = 162

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 91/143 (63%), Gaps = 4/143 (2%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           P+L++V+ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V+D Q  +    
Sbjct: 12  PVLKQVAEPVEHVNKKLRVLIDDMAETMYKTEGVGLAAPQVAVAKRIIVVDDQSGS---G 68

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  INP+I T ++   V  EGCLS+P Y  DV+R   +TV+ +D + +   I A+G LA
Sbjct: 69  LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFNKVTVKGIDPHNKKVTIKAEGFLA 127

Query: 132 TCLQHELDHLNGILFIDHLSRLK 154
              QHE+DHL G LFI+  + L+
Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLR 150


>gi|253575776|ref|ZP_04853111.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844819|gb|EES72832.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 160

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 91/148 (61%), Gaps = 4/148 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  PD +L +V++ ++KI  +I  L+ +M + MY  +G+GLAA QIG+L R++V+D+ D
Sbjct: 6   IVKEPDEVLHQVAKEVKKITPNIQKLLTDMADTMYDAEGVGLAAPQIGILKRVIVVDVGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  INP+I++   +     EGCLSIP YR DV+R+  +TV+ +D N       
Sbjct: 66  E---HGLIELINPEIVSKEGE-QFGPEGCLSIPGYRGDVRRAMTVTVKGLDRNGNEVTYT 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153
              LLA   QHE+DHLNG+L+ D   R+
Sbjct: 122 GSELLARAFQHEIDHLNGVLYTDIAERV 149


>gi|53712973|ref|YP_098965.1| peptide deformylase [Bacteroides fragilis YCH46]
 gi|60681185|ref|YP_211329.1| peptide deformylase [Bacteroides fragilis NCTC 9343]
 gi|253563049|ref|ZP_04840506.1| peptide deformylase [Bacteroides sp. 3_2_5]
 gi|265763070|ref|ZP_06091638.1| peptide deformylase [Bacteroides sp. 2_1_16]
 gi|81315745|sp|Q5LEQ9|DEF_BACFN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81690706|sp|Q64VP5|DEF_BACFR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|52215838|dbj|BAD48431.1| peptide deformylase [Bacteroides fragilis YCH46]
 gi|60492619|emb|CAH07391.1| putative peptide deformylase [Bacteroides fragilis NCTC 9343]
 gi|251946825|gb|EES87107.1| peptide deformylase [Bacteroides sp. 3_2_5]
 gi|263255678|gb|EEZ27024.1| peptide deformylase [Bacteroides sp. 2_1_16]
 gi|301162674|emb|CBW22221.1| putative peptide deformylase [Bacteroides fragilis 638R]
          Length = 184

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+VVI+L 
Sbjct: 4   PIYVYGQPVLRQVAEDITVDYPNLKELIENMFETMDHADGVGLAAPQIGLPIRVVVINLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D+   K+    +IN  I     +    +EGCLS+P     VKR + I VRYMD N 
Sbjct: 64  VLSEDYPEYKDFRKAYINAHIDVVEGEEVSMEEGCLSLPGIHESVKRGSKIHVRYMDENF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++
Sbjct: 124 VEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLK 171


>gi|298372481|ref|ZP_06982471.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275385|gb|EFI16936.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 185

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 9/174 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++   +LR V++PI +   +I  LIDNM E M + DGIGLAA QIG+  RL VID+ 
Sbjct: 4   PVYLYGSGVLREVAKPITEDYPNIRELIDNMFETMRNADGIGLAAPQIGLSIRLFVIDIS 63

Query: 65  D-HAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                R  P         +FIN +I     D  +Y+EGCLSIP     V R   I ++Y+
Sbjct: 64  PLDTERDFPQLRDCPKQKIFINAEITERYGDTVIYEEGCLSIPKINEKVPRPDKIKIKYL 123

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D   +      +G  A  +QHE DH++G +F+DH+S L++ +I  K++ +V+ +
Sbjct: 124 DETFREHEDEFEGYFARVIQHECDHIDGKMFVDHISPLRKQLIKSKLADIVKRK 177


>gi|289548788|ref|YP_003473776.1| peptide deformylase [Thermocrinis albus DSM 14484]
 gi|289182405|gb|ADC89649.1| peptide deformylase [Thermocrinis albus DSM 14484]
          Length = 174

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 6/160 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P P+L++ +  ++ I+S+I+ L+ +M + MY+ +G+GLAA QIG   R++VID      
Sbjct: 8   YPHPLLKQPTLKVDVIDSEILKLVQDMWDTMYAEEGVGLAANQIGEPLRIMVIDTT--PK 65

Query: 69  RKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           R++P   +V INP++I  ++    Y+EGCLS P    +V R + +  R +D + + +   
Sbjct: 66  RESPPVKLVLINPQLIE-AEGHITYREGCLSFPGLSVEVTRYSKVRFRALDLSGEEKEYQ 124

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +G  A   QHELDHLNGI FID LS L+R +  +K  KL
Sbjct: 125 LEGFPAIVFQHELDHLNGITFIDRLSGLRRRLALEKYGKL 164


>gi|328675276|gb|AEB27951.1| Peptide deformylase [Francisella cf. novicida 3523]
          Length = 172

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 5/162 (3%)

Query: 9   FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  V  + D+
Sbjct: 8   YPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFFV--MYDN 65

Query: 67  AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +NP +              +  +EGCLS P   A V R+  + ++ ++   +   + 
Sbjct: 66  LEEQNPEIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFGEEIEVE 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q
Sbjct: 126 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQ 167


>gi|237716076|ref|ZP_04546557.1| peptide deformylase [Bacteroides sp. D1]
 gi|237722139|ref|ZP_04552620.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4]
 gi|262407688|ref|ZP_06084236.1| peptide deformylase [Bacteroides sp. 2_1_22]
 gi|294643796|ref|ZP_06721594.1| peptide deformylase [Bacteroides ovatus SD CC 2a]
 gi|294808456|ref|ZP_06767209.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b]
 gi|298480836|ref|ZP_06999031.1| peptide deformylase [Bacteroides sp. D22]
 gi|229443723|gb|EEO49514.1| peptide deformylase [Bacteroides sp. D1]
 gi|229447949|gb|EEO53740.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4]
 gi|262354496|gb|EEZ03588.1| peptide deformylase [Bacteroides sp. 2_1_22]
 gi|292640885|gb|EFF59105.1| peptide deformylase [Bacteroides ovatus SD CC 2a]
 gi|294444384|gb|EFG13098.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b]
 gi|295085225|emb|CBK66748.1| peptide deformylase [Bacteroides xylanisolvens XB1A]
 gi|298272859|gb|EFI14425.1| peptide deformylase [Bacteroides sp. D22]
          Length = 184

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+V I L 
Sbjct: 4   PIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTITLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +++   K+    +INP I+    +    +EGCLS+P     VKR   I V+YMD N 
Sbjct: 64  PLSEEYPEFKDFNKAYINPHILEVGGEEVNMEEGCLSLPGIHETVKRGDKIRVKYMDENF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++
Sbjct: 124 VEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLK 171


>gi|149176747|ref|ZP_01855358.1| peptide deformylase [Planctomyces maris DSM 8797]
 gi|148844388|gb|EDL58740.1| peptide deformylase [Planctomyces maris DSM 8797]
          Length = 196

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 2/154 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-Q 64
           +V +P P LR  S+P++ I  ++ +++ NM ++MY   GIGLAA Q+ + YRL VI+L  
Sbjct: 6   IVNYPHPALRWKSKPVKSITPELRDIVRNMFDLMYEARGIGLAANQVALPYRLFVINLTS 65

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D    +   VFINP+I T     +  +EGCLS+P    DVKRS  ITV   D N Q   I
Sbjct: 66  DPNEPEEEFVFINPEI-TKRKGTAEGEEGCLSLPQVYGDVKRSEEITVEAYDLNGQLFEI 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
             D L A  +QHE DH+ GI+F D +   KR+ I
Sbjct: 125 TLDDLAARAVQHEHDHIEGIMFPDRMVEAKRNEI 158


>gi|39998545|ref|NP_954496.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
 gi|39985492|gb|AAR36846.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
 gi|298507488|gb|ADI86211.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens
           KN400]
          Length = 169

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 104/170 (61%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + ++ +P P+L++V   +  I+  I  LID+++E M    G +G+AA QIGV  R+ 
Sbjct: 1   MPAQTILQYPHPVLKKVCHTVTAIDEAIRGLIDDLIETMREGPGSVGVAAPQIGVTLRVC 60

Query: 60  VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           VID+    H K+     ++ +NP+I+  S + +V +EGC+S+PDY  DV+RS  + VR++
Sbjct: 61  VIDVSGSRHGKDNNHGLLLMVNPEIVDRSGN-AVMREGCMSVPDYTGDVERSTEVRVRFL 119

Query: 116 D-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D  +   + I A G  A  +QHE+DHL+GILF+D +  +K  +  +K  K
Sbjct: 120 DGADGSEREITASGFEAVAIQHEMDHLDGILFLDRIVSIKTGLFRRKNYK 169


>gi|154244580|ref|YP_001415538.1| peptide deformylase [Xanthobacter autotrophicus Py2]
 gi|154158665|gb|ABS65881.1| peptide deformylase [Xanthobacter autotrophicus Py2]
          Length = 168

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPD  LR V+ P+   +  + NL+ ++L+ + +  GIG+ A  IG+  R+VV
Sbjct: 1   MTARQIITFPDARLRSVAAPVTVFDDALANLVADLLDTLRAAPGIGITAPHIGIGKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   +       +INP+I+  S +   + EG +S+P    +V+R A + VRY D +  
Sbjct: 61  LEL---SAEDGVRAYINPQIVWASAELIRHAEGSVSMPGVTEEVERPARVHVRYQDLSGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +  ADGL A C QHE+D L+G+ +I  LSRLKR+ + K+  K
Sbjct: 118 EHLEEADGLRAVCHQHEIDQLDGVFWIQRLSRLKRERVIKRYEK 161


>gi|119357657|ref|YP_912301.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266]
 gi|158512604|sp|A1BHK0|DEF_CHLPD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|119355006|gb|ABL65877.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266]
          Length = 188

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 103/165 (62%), Gaps = 5/165 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ I+ D +LR  ++P++ I+ +I +L+ +MLE M +  GIGLAA Q+G   RL+VIDL 
Sbjct: 4   PINIYNDEVLRATAKPLKGIDRNIRDLVASMLESMRNASGIGLAAPQVGCSIRLLVIDLS 63

Query: 64  --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
             + +A  K P+V INP ++     ++  +EGCLS+P    DV R + IT++Y D + + 
Sbjct: 64  CMEKYADEK-PVVVINPHLLAVKG-YNAMEEGCLSLPGILGDVVRPSSITLKYRDEHFEE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +     G++A  LQHE+DHL+G LFID + +  R  I K++  L 
Sbjct: 122 RTGEFSGMMARVLQHEIDHLDGKLFIDRMQKRDRRKIDKELHSLA 166


>gi|313893407|ref|ZP_07826979.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442048|gb|EFR60468.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 162

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 91/143 (63%), Gaps = 4/143 (2%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           P+L++V+ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V+D Q  +    
Sbjct: 12  PVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVSKRIIVVDDQVGS---G 68

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  INP+I T ++   V  EGCLS+P Y  DV+R   ITV+ +D + +   I A+G LA
Sbjct: 69  LIALINPEI-THAEGSQVGPEGCLSVPGYYGDVERFNKITVKGIDPHNKKVTIKAEGFLA 127

Query: 132 TCLQHELDHLNGILFIDHLSRLK 154
              QHE+DHL G LFI+  + L+
Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLR 150


>gi|297568346|ref|YP_003689690.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924261|gb|ADH85071.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
          Length = 200

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 30/199 (15%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP P L+  ++P+ + N ++  L  +M+E M++  G+GLAA QIGV  R+VV
Sbjct: 1   MAIQPIVQFPVPSLKSRAKPVSEFNDELRRLALDMIETMHAAPGVGLAAPQIGVPLRVVV 60

Query: 61  ID-------------LQDHAHRKNP----------------MVFINPKIITFSDDFSVYQ 91
           I               Q+H                      +V INP+I+  ++   V +
Sbjct: 61  IAGRVTLDEEQRAALAQEHGEAGEAAPSPPSPPSEEELAPSLVLINPEIVE-AEGQQVDE 119

Query: 92  EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           EGCLS+ +Y  +VKR A I V+  D + Q     A+   A  +QHELDHL+G LFID +S
Sbjct: 120 EGCLSVREYATNVKRFARIRVKAQDLSGQPLDFVAEDFFARVIQHELDHLDGTLFIDRIS 179

Query: 152 RLKRDMITKKMSKLVQLRD 170
            LKR +  KK+ K++Q  +
Sbjct: 180 PLKRTLYRKKLKKIMQAEE 198


>gi|323705507|ref|ZP_08117082.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535409|gb|EGB25185.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 158

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 95/150 (63%), Gaps = 6/150 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPIL + ++ ++KI+  ++ ++D+M E MY+ DG+GLAA QIG+L RLVV+D+ D     
Sbjct: 11  DPILYKKAKYVDKIDDHVIMILDDMAETMYNADGVGLAANQIGILRRLVVVDVGD----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+II   +   + +EGCLS+P+   +VKR   + VRY D   +++ +  +  L
Sbjct: 66  GLIELINPEII-LEEGEQIGKEGCLSVPNVTGEVKRPKKVRVRYQDRTGEYKELEGEDFL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           A  L HE+DHLNGILF++   R+  D   K
Sbjct: 125 ARALSHEIDHLNGILFVNKAIRIINDEEEK 154


>gi|319951883|ref|YP_004163150.1| peptide deformylase [Cellulophaga algicola DSM 14237]
 gi|319420543|gb|ADV47652.1| peptide deformylase [Cellulophaga algicola DSM 14237]
          Length = 196

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 87/159 (54%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ + DP+LR+V   I K    +  L++NM E MY+  G+GLAA QIG+  RL VID  
Sbjct: 4   PIIAYGDPVLRKVGTDIAKDYPKLETLVENMWETMYNASGVGLAAPQIGLPIRLFVIDTT 63

Query: 65  DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             +  ++              VF+N KI   + +   + EGCLSIPD R DV R   I +
Sbjct: 64  PFSEDEDLSPEDQKALDGFKKVFVNAKIEEETGEEWNFNEGCLSIPDVREDVNRKETIKI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            Y+D N   +     GLLA  +QHE DH+ GILF D LS
Sbjct: 124 TYLDENFNEKSESYGGLLARVIQHEYDHIEGILFTDKLS 162


>gi|109947463|ref|YP_664691.1| peptide deformylase [Helicobacter acinonychis str. Sheeba]
 gi|122973308|sp|Q17XD4|DEF_HELAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|109714684|emb|CAJ99692.1| polypeptide deformylase [Helicobacter acinonychis str. Sheeba]
          Length = 175

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 101/160 (63%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +P  ILR +S+ +   ++     +D+M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YPSKILRTISKEVVSFDAKFHQQLDDMHETMIASEGIGLAAIQVGLPLRMLLINLPREDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +++EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETKGSI-MFKEGCLSVPGFYEEVERFEKVKIEYQNRFAKVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|223040084|ref|ZP_03610365.1| peptide deformylase [Campylobacter rectus RM3267]
 gi|222878670|gb|EEF13770.1| peptide deformylase [Campylobacter rectus RM3267]
          Length = 170

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 99/164 (60%), Gaps = 5/164 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++ +P+  L   S  ++  + ++   +D+M E M + +GIGLAA+Q G   R+++++L 
Sbjct: 4   EILTYPNKKLFVKSLEVKVFDEELHKFLDDMYETMIAKNGIGLAAIQTGEAKRILIVNLF 63

Query: 65  DHA---HRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D      RK  ++  INPKI+    +  +YQEGCLS+P Y  DVKR+ FIT+ Y D   Q
Sbjct: 64  DEESKEQRKEDLLEIINPKILRKEGEI-IYQEGCLSVPGYYEDVKRAEFITLEYQDRFGQ 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + + A+GLL+  +QHE+DHL+G LFI+ +   KR    K+  K
Sbjct: 123 RRELEAEGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKK 166


>gi|307719714|ref|YP_003875246.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
 gi|306533439|gb|ADN02973.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
          Length = 163

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 4/150 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+ +  + +I+  +  +++ M ++M+  +GIGLAA Q+G+  R  +     H    
Sbjct: 8   DEILRKRAVLVPEIDGRVARVVEGMFDLMHEANGIGLAAPQVGISQRFFIC----HVPEG 63

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+VFINP+I   S + + ++EGCLSIP   ADV R A + V   +   +   + ADG+L
Sbjct: 64  EPLVFINPEITATSPELTTFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRMEADGML 123

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           A  +QHE DHLNG+LF+D L   KR+ + +
Sbjct: 124 ARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153


>gi|188585959|ref|YP_001917504.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229487487|sp|B2A2K1|DEF_NATTJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|179350646|gb|ACB84916.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 156

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 92/147 (62%), Gaps = 6/147 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHR 69
           DP+L+R ++ +  I+  +  L+ NML+ MY  +GIGLAA QIG+  R++V+D+ +D  ++
Sbjct: 11  DPVLKRKAKKVTNIDDRLERLLTNMLDTMYEAEGIGLAAPQIGISKRVIVVDIGEDEIYQ 70

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
                 INP+I+  SD+     EGCLS P  +  V R   +TV+ ++   +  II A+GL
Sbjct: 71  -----LINPEIVDTSDEQEKALEGCLSYPGLQGRVTRPVKVTVKALNPQEEEMIIEAEGL 125

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRD 156
           LA  LQHE+DHL+GI FID    + R+
Sbjct: 126 LARALQHEIDHLDGITFIDRAEEVFRE 152


>gi|289449949|ref|YP_003475241.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184496|gb|ADC90921.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 160

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 95/150 (63%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M  + +++  D  LR+ +RP++ I +  I  ++D+M++ +Y+T +G+GLAAVQ+G+L R+
Sbjct: 1   MAVREIIVDGDDRLRKKARPVDNIADPKIQQIVDDMIDTLYATGNGVGLAAVQVGILKRI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            VIDLQD    K   V+INP+II         QEGCLS+P +  +V R A +TVR  D N
Sbjct: 61  FVIDLQDG---KGLKVYINPEIIDRQGS-QCNQEGCLSLPGFWGEVIRPAKVTVRAFDRN 116

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFID 148
            +     A GL A C+ HE DHLNGILF D
Sbjct: 117 GKQFEQTATGLGAICISHETDHLNGILFKD 146


>gi|303232127|ref|ZP_07318830.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513233|gb|EFL55272.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6]
          Length = 162

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 4/144 (2%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           PIL+ V+ P+E +N  +  LI++M + MY T+G+GLAA Q+ V  R++V+D  DHA    
Sbjct: 12  PILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIVVD--DHA-GSG 68

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  INP+II   +   +  EGCLS+P Y  DV+R   +TV+ +D + +  +I A+G LA
Sbjct: 69  LIALINPEII-HGEGSQIGLEGCLSVPGYFGDVERFEKVTVKGIDPHNKKVMIKAEGFLA 127

Query: 132 TCLQHELDHLNGILFIDHLSRLKR 155
              QHE+DHL G LFI+  + L+R
Sbjct: 128 RIFQHEIDHLEGHLFIEKATNLRR 151


>gi|255692008|ref|ZP_05415683.1| peptide deformylase [Bacteroides finegoldii DSM 17565]
 gi|260622254|gb|EEX45125.1| peptide deformylase [Bacteroides finegoldii DSM 17565]
          Length = 184

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I L 
Sbjct: 4   PIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D+   K+    +INP I+    +    +EGCLS+P     VKR   I V+YMD N 
Sbjct: 64  PLSEDYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMDENF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++
Sbjct: 124 VEYEEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLK 171


>gi|289803413|ref|ZP_06534042.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 135

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 90/130 (69%), Gaps = 3/130 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +  +
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--N 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N     + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGNPFELEADG 125

Query: 129 LLATCLQHEL 138
           LLA C+QHE+
Sbjct: 126 LLAICIQHEM 135


>gi|270308074|ref|YP_003330132.1| peptide deformylase [Dehalococcoides sp. VS]
 gi|270153966|gb|ACZ61804.1| peptide deformylase [Dehalococcoides sp. VS]
          Length = 167

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 4/147 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            P+P+LR+ ++ +  I+S I  LID+M+E M S DG GLAA Q+GV  RLVV    D   
Sbjct: 9   LPEPVLRKKAKKVPSIDSSIQTLIDDMIETMSSADGAGLAAPQVGVSLRLVVFREPDA-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            K   V INP+I+       V  EGCLSIP Y  ++ R+  +T + +D + +   I   G
Sbjct: 67  -KEATVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGKACRIKGTG 124

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKR 155
           ++A  L+HE +HL+GIL+IDHL   ++
Sbjct: 125 IVAQLLEHETEHLDGILYIDHLESEEK 151


>gi|257877734|ref|ZP_05657387.1| formylmethionine deformylase [Enterococcus casseliflavus EC20]
 gi|257811900|gb|EEV40720.1| formylmethionine deformylase [Enterococcus casseliflavus EC20]
          Length = 162

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 103/164 (62%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LRR ++P++ I  +++ L+D++ E M + DGIG+AA Q+G   ++ ++
Sbjct: 1   MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++++     +    INP+II  S + S+  EGCLSIP     VKR+  ITVRY D   + 
Sbjct: 61  EVEE----DDRFEMINPEIIASSGE-SLDVEGCLSIPHTFGTVKRADEITVRYFDREGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
             + A G LA  +QHE+DHLNG+LF+D L  R+  + + K M +
Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKLVERIPEEDLEKYMEE 159


>gi|172039521|ref|YP_001806022.1| peptide deformylase [Cyanothece sp. ATCC 51142]
 gi|171700975|gb|ACB53956.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142]
          Length = 187

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 86/143 (60%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +  D +LR+ ++ I K++  +  L   ML+ MYS+ GIGLAA Q+ +  +L+VID +   
Sbjct: 21  VLGDRVLRQPAKRIAKVDDSVRQLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDCEPDN 80

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               P++ INPKI   S +  V +EGCLSIP    DV R   I V + D   + + I A 
Sbjct: 81  PANPPLILINPKITRVSQELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRKIQAT 140

Query: 128 GLLATCLQHELDHLNGILFIDHL 150
            LLA  +QHE+DHLNG++F+D +
Sbjct: 141 DLLARVIQHEMDHLNGVMFVDRV 163


>gi|120436619|ref|YP_862305.1| peptide deformylase [Gramella forsetii KT0803]
 gi|158512448|sp|A0M3P3|DEF_GRAFK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|117578769|emb|CAL67238.1| peptide deformylase [Gramella forsetii KT0803]
          Length = 196

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 102/175 (58%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ + DP+L++ ++ I+K    +  LI+NM + MY+  G+GLAA Q+G+  R+ +ID  
Sbjct: 4   PIIAYGDPVLKKKAKDIDKDYPKLEELINNMWDTMYNAYGVGLAAPQVGLPVRMFMIDPA 63

Query: 65  --------DHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                   D A +K  M    VFINP+II  + +   + EGCLSIP+ R DV R   IT+
Sbjct: 64  PFADDEELDEAEKKVLMDLRKVFINPQIIEETGEEWAFSEGCLSIPEVREDVFRQPDITI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y D N +       GL A  +QHE DH+ GILF D LS LK+ +I  K++ + +
Sbjct: 124 EYHDENWEKHTETYSGLAARVIQHEYDHIEGILFTDKLSSLKKRLIKSKLANISK 178


>gi|56708685|ref|YP_170581.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110671157|ref|YP_667714.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134302737|ref|YP_001122705.1| peptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156501451|ref|YP_001427516.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010290|ref|ZP_02275221.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368481|ref|ZP_04984498.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254371316|ref|ZP_04987318.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875560|ref|ZP_05248270.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|295312318|ref|ZP_06803105.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|56605177|emb|CAG46308.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110321490|emb|CAL09691.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134050514|gb|ABO47585.1| Peptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151569556|gb|EDN35210.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156252054|gb|ABU60560.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121375|gb|EDO65576.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254841559|gb|EET19995.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 174

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 5/162 (3%)

Query: 9   FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  +  + D+
Sbjct: 10  YPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFFI--MYDN 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +NP +           +  +  +EGCLS P   A V R+  + ++ ++   +   + 
Sbjct: 68  LEEQNPEIITIINPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFGEEIEVE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q
Sbjct: 128 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQ 169


>gi|89255517|ref|YP_512878.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115314036|ref|YP_762759.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|187930952|ref|YP_001890936.1| peptide deformylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224457894|ref|ZP_03666367.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254366945|ref|ZP_04982982.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
 gi|290954254|ref|ZP_06558875.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143348|emb|CAJ78515.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115128935|gb|ABI82122.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134252772|gb|EBA51866.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
 gi|187711861|gb|ACD30158.1| peptide deformylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|282159936|gb|ADA79327.1| peptide deformylase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 172

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 5/162 (3%)

Query: 9   FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  +  + D+
Sbjct: 8   YPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFFI--MYDN 65

Query: 67  AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +NP +           +  +  +EGCLS P   A V R+  + ++ ++   +   + 
Sbjct: 66  LEEQNPEIITIINPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFGEEIEVE 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q
Sbjct: 126 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQ 167


>gi|150025801|ref|YP_001296627.1| peptide deformylase [Flavobacterium psychrophilum JIP02/86]
 gi|158513727|sp|A6H0E7|DEF_FLAPJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149772342|emb|CAL43820.1| Peptide deformylase [Flavobacterium psychrophilum JIP02/86]
          Length = 194

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+V + DP+LR+V   I K   ++   I NM E MY+  G+GLAA Q+G+  RL ++D  
Sbjct: 4   PIVGYGDPVLRKVCEEITKDYINLEETIANMYETMYNACGVGLAAPQVGLPIRLFIVDAD 63

Query: 64  -----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                      +  A +     FIN K++    +   + EGCLSIPD R DV R+  IT+
Sbjct: 64  PFSDSDDISKEEAAALKGFKKTFINAKMLKEEGEEWSFSEGCLSIPDVREDVYRNPNITI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y D N   +    +GL+A  +QHE DH+ G+LF D ++  K+  I KK+  +++
Sbjct: 124 EYYDENFNKKTEEYNGLIARVIQHEYDHIEGVLFTDKITVFKKQFIKKKLQNIME 178


>gi|308234578|ref|ZP_07665315.1| peptide deformylase [Atopobium vaginae DSM 15829]
          Length = 183

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 92/168 (54%), Gaps = 8/168 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K +V  P  IL+ V  P+++I  +I +L  +M EVMY+TDG GLAA QIG   RLVVID 
Sbjct: 8   KEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVIDC 67

Query: 64  Q-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +     RK P V +NPKI+   +      EGCLS P     VKR + +    ++ +    
Sbjct: 68  EWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGDLI 127

Query: 123 IIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              A G LLA CLQHE DHL G+   DHL       + KKM KL + +
Sbjct: 128 RYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 169


>gi|257868125|ref|ZP_05647778.1| formylmethionine deformylase [Enterococcus casseliflavus EC30]
 gi|257874600|ref|ZP_05654253.1| formylmethionine deformylase [Enterococcus casseliflavus EC10]
 gi|325567766|ref|ZP_08144377.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
 gi|257802239|gb|EEV31111.1| formylmethionine deformylase [Enterococcus casseliflavus EC30]
 gi|257808764|gb|EEV37586.1| formylmethionine deformylase [Enterococcus casseliflavus EC10]
 gi|325158539|gb|EGC70686.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
          Length = 163

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 103/164 (62%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LRR ++P++ I  +++ L+D++ E M + DGIG+AA Q+G   ++ ++
Sbjct: 1   MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++++     +    INP+II  S + S+  EGCLSIP     VKR+  ITVRY D   + 
Sbjct: 61  EVEE----DDRFEMINPEIIASSGE-SLDVEGCLSIPHTFGTVKRADEITVRYFDREGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
             + A G LA  +QHE+DHLNG+LF+D L  R+  + + K M +
Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKLVERIPEEDLEKYMEE 159


>gi|229828535|ref|ZP_04454604.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM
           14600]
 gi|229793129|gb|EEP29243.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM
           14600]
          Length = 160

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 91/148 (61%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DPIL++V RP+ K++     LID+MLE MY  +G+GLAA Q+GVL R+VV
Sbjct: 1   MAIREIRIDGDPILKKVCRPVSKLSDRQQELIDDMLETMYEANGVGLAAPQVGVLRRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V +NP+ IT  D   + +EGCLS+P   A V R   +  R +D N +
Sbjct: 61  IDVGE-----GPLVMVNPE-ITEKDGEQIGEEGCLSVPGKAAIVTRPEHVIARALDRNMK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +   GLLA  + HELDHL+G ++ +
Sbjct: 115 EFSVEGTGLLARAICHELDHLDGHMYTE 142


>gi|307722030|ref|YP_003893170.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294]
 gi|306980123|gb|ADN10158.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294]
          Length = 174

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 98/163 (60%), Gaps = 4/163 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PD  LR+ S  +++ ++ +  L+D M  +M +T+GIGLAA+Q+    R +++++ D
Sbjct: 5   IVEYPDKTLRKKSCEVKEFDASLHKLLDAMNPLMINTNGIGLAAIQVAYPIRALILNVPD 64

Query: 66  HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               + P   +  INP ++T     + YQEGCLS+P +  D+KR   + + Y D     +
Sbjct: 65  EDGEQPPENLLEIINP-VMTHKSGETTYQEGCLSVPQFYEDIKRYDNVVINYQDRYGNTK 123

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            + ADGLLA  +QHE+DHL GILFID LS  +R    K+  ++
Sbjct: 124 TLDADGLLAIAIQHEMDHLEGILFIDKLSYARRKKFEKEYKRM 166


>gi|301168570|emb|CBW28160.1| peptide deformylase [Bacteriovorax marinus SJ]
          Length = 197

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 15/160 (9%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           +  +P P+L++V+ P+ + + D+  L  +ML  MY   GIGLAA QIG   RL V+D+  
Sbjct: 19  IFTYPAPVLKKVAEPVTEFDDDLRALCKDMLFTMYHAPGIGLAAPQIGKSIRLFVMDIDY 78

Query: 64  -QDHAHRK-----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            ++   R            NPM+FINP +I+      +Y+EGCLS+P    +VKR+  IT
Sbjct: 79  DREEVTRADGSSEHVLSNFNPMIFINP-VISNKHGEILYEEGCLSVPGIYEEVKRAKTIT 137

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V Y D   +   I AD LL+ CLQHE DHL GI+F++ LS
Sbjct: 138 VDYQDMWGEKHSIDADELLSICLQHENDHLEGIVFLERLS 177


>gi|260424655|ref|ZP_05732837.2| peptide deformylase [Dialister invisus DSM 15470]
 gi|260402717|gb|EEW96264.1| peptide deformylase [Dialister invisus DSM 15470]
          Length = 161

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 4/150 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++   DPIL+ V+ P+   +  +  L++ M + MY ++G+GLAA QI V  R+ V D  +
Sbjct: 11  IITAGDPILKSVAMPVTAFDKKLKFLVNEMKKTMYESNGVGLAAPQIAVSKRVFVADDGE 70

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                    +INP+     D+     EGCLS+P++  +V+R A +TV+Y D + + +   
Sbjct: 71  SGFE----AYINPRWTPDGDEKVTDTEGCLSVPNWYGEVERYANVTVKYQDIHGKRKQKK 126

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           A GLLA C+QHE DHLNGILFI+  + L +
Sbjct: 127 ATGLLARCIQHETDHLNGILFIEKANSLHK 156


>gi|315224454|ref|ZP_07866281.1| peptide deformylase [Capnocytophaga ochracea F0287]
 gi|314945475|gb|EFS97497.1| peptide deformylase [Capnocytophaga ochracea F0287]
          Length = 196

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 91/175 (52%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ + DP+LR+V   I      +  LI NM + M +  G+GLAA Q+G+  RL V+D  
Sbjct: 4   PIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVVDAS 63

Query: 65  DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A             +     FIN KI+  + D   + EGCLSIP  R DV R   IT+
Sbjct: 64  PFADDDELSEDEQTFLKGFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQITI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y D +   Q +   GL A  +QHE DH+ GILF D LS  KR +I  K++ + +
Sbjct: 124 EYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISK 178


>gi|328944367|ref|ZP_08241830.1| peptide deformylase [Atopobium vaginae DSM 15829]
 gi|327491082|gb|EGF22858.1| peptide deformylase [Atopobium vaginae DSM 15829]
          Length = 187

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 92/168 (54%), Gaps = 8/168 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K +V  P  IL+ V  P+++I  +I +L  +M EVMY+TDG GLAA QIG   RLVVID 
Sbjct: 12  KEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVIDC 71

Query: 64  Q-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +     RK P V +NPKI+   +      EGCLS P     VKR + +    ++ +    
Sbjct: 72  EWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGDLI 131

Query: 123 IIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              A G LLA CLQHE DHL G+   DHL       + KKM KL + +
Sbjct: 132 RYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 173


>gi|238924698|ref|YP_002938214.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|259645181|sp|C4ZEV9|DEF_EUBR3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238876373|gb|ACR76080.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|291526147|emb|CBK91734.1| peptide deformylase [Eubacterium rectale DSM 17629]
 gi|291527119|emb|CBK92705.1| peptide deformylase [Eubacterium rectale M104/1]
          Length = 158

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 6/157 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+L +V R + ++   I+ LID+MLE MY  +G+GLAA Q+G+L R+VV
Sbjct: 1   MALRTIRVEGDPVLGKVCREVTEVTPKIVTLIDDMLETMYEANGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+II  SD      EGCLS+P     V R  ++  R+M  +  
Sbjct: 61  IDVGE-----GPIVMINPEIIE-SDGEQTGDEGCLSVPGKAGQVTRPNYVKARFMGEDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              I  + LLA C+ HELDHL+G L+++ +     D+
Sbjct: 115 EYEIEGEELLARCICHELDHLDGHLYVEKVEGALHDV 151


>gi|126700204|ref|YP_001089101.1| peptide deformylase 2 [Clostridium difficile 630]
 gi|254976176|ref|ZP_05272648.1| peptide deformylase 2 [Clostridium difficile QCD-66c26]
 gi|255093565|ref|ZP_05323043.1| peptide deformylase 2 [Clostridium difficile CIP 107932]
 gi|255307617|ref|ZP_05351788.1| peptide deformylase 2 [Clostridium difficile ATCC 43255]
 gi|255315309|ref|ZP_05356892.1| peptide deformylase 2 [Clostridium difficile QCD-76w55]
 gi|255517977|ref|ZP_05385653.1| peptide deformylase 2 [Clostridium difficile QCD-97b34]
 gi|255651093|ref|ZP_05397995.1| peptide deformylase 2 [Clostridium difficile QCD-37x79]
 gi|260684158|ref|YP_003215443.1| peptide deformylase 2 [Clostridium difficile CD196]
 gi|260687817|ref|YP_003218951.1| peptide deformylase 2 [Clostridium difficile R20291]
 gi|115251641|emb|CAJ69474.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2 )
           [Clostridium difficile]
 gi|260210321|emb|CBA64646.1| peptide deformylase 2 [Clostridium difficile CD196]
 gi|260213834|emb|CBE05821.1| peptide deformylase 2 [Clostridium difficile R20291]
          Length = 146

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 96/152 (63%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +EKI+  I+ L+D+M E MY  DG+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II  S +  + +EGCLS+     +V+R  ++ VR ++ N +
Sbjct: 61  IDIGEEL-----IELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  + LLA    HE+DHL+GILF+D + +
Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146


>gi|304382925|ref|ZP_07365407.1| peptide deformylase [Prevotella marshii DSM 16973]
 gi|304335950|gb|EFM02198.1| peptide deformylase [Prevotella marshii DSM 16973]
          Length = 186

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 98/172 (56%), Gaps = 7/172 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+V++ I     D+  LI NM E M S+DGIGLAA QIG   R+VVIDL 
Sbjct: 4   PIYVYGQPVLRKVAQDISSDYPDLQELIANMFETMDSSDGIGLAAPQIGKSIRVVVIDLN 63

Query: 65  ----DHAHRKN-PMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               D    K+    +INP I+    + +  + +EGCLSIP     V R + I V Y+D 
Sbjct: 64  VLSDDFPEYKDFRKAYINPHILEIDETSEKRLMEEGCLSIPGLHEKVPRFSRIHVTYLDE 123

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                  + +G LA  +QHE DHL G +F+DH+S L++ +I  K+  L Q R
Sbjct: 124 AFVSHDEWVEGYLARVMQHEFDHLEGKMFVDHISPLRKQLIKNKLKALTQGR 175


>gi|52080175|ref|YP_078966.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|52785552|ref|YP_091381.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|319646045|ref|ZP_08000275.1| def protein [Bacillus sp. BT1B_CT2]
 gi|52003386|gb|AAU23328.1| polypeptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|52348054|gb|AAU40688.1| Def [Bacillus licheniformis ATCC 14580]
 gi|317391795|gb|EFV72592.1| def protein [Bacillus sp. BT1B_CT2]
          Length = 160

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+V +P  +L   + P+   +  +  L+DNM + M   DG+GLAA QIGV  R  V
Sbjct: 1   MAVKPIVTYPAEVLETPAEPVASFDKSLKKLLDNMYDTMLELDGVGLAAPQIGVSKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R   +  +NP++I  S +     EGCLS PD   +VKRS ++ V+  D   +
Sbjct: 61  VDIGDDTGR---IELVNPEVIEESGE-QTGPEGCLSFPDLYGEVKRSDYVKVKAFDRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A+G LA  L HE+DHL+GILF   ++R
Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFTSKVTR 148


>gi|295094723|emb|CBK83814.1| peptide deformylase [Coprococcus sp. ART55/1]
          Length = 155

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 5/138 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+V RP+EK++   + LID+M + MY  +G+GLAA Q+G+L R+VVID+ D     
Sbjct: 11  DDILRKVCRPVEKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVVIDVGD----D 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           NP+  INP +IT SD     +EGCLS+P     V R   +  +  D N +   +  +GLL
Sbjct: 67  NPLCLINP-VITESDGEQTGEEGCLSLPGKFGTVTRPMHVICKAFDENMEEFTVEGEGLL 125

Query: 131 ATCLQHELDHLNGILFID 148
           A  + HELDHL+G L+ D
Sbjct: 126 ARAICHELDHLDGKLYKD 143


>gi|153808041|ref|ZP_01960709.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185]
 gi|149129650|gb|EDM20864.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185]
          Length = 184

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 96/168 (57%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I L 
Sbjct: 4   PIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D+   K     +INP I+    +    +EGCLS+P     VKR   I V+YMD + 
Sbjct: 64  PLSEDYPEFKGFNKAYINPHILEIGGEEVSMEEGCLSLPGIHETVKRGNKIRVKYMDEDF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++
Sbjct: 124 VEHEEEVEGYLARVMQHEFDHLDGKMFIDHISALRKQMIKGKLNTMLK 171


>gi|213963665|ref|ZP_03391916.1| peptide deformylase [Capnocytophaga sputigena Capno]
 gi|213953660|gb|EEB64991.1| peptide deformylase [Capnocytophaga sputigena Capno]
          Length = 193

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 94/175 (53%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ + DP+LR+V   I     ++  LI NM + M    G+GLAA Q+G+  RL V+D  
Sbjct: 4   PIIGYGDPVLRKVGEDITPDYPELKALIANMYDTMRHAYGVGLAAPQVGLAIRLFVVDAS 63

Query: 65  DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A             +     FIN KI   + D   + EGCLSIP  R DV R   IT+
Sbjct: 64  PFAEDDDLTAEEQAFLKTFQKTFINAKITEETGDKWNFNEGCLSIPGVREDVSRHKQITI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y+D + + Q +  DGL A  +QHE DH+ GILF D LS  K+ +I  K++ +++
Sbjct: 124 EYLDEDFKPQTLTLDGLAARIVQHEYDHIEGILFTDKLSAFKKQLIKTKLNNIMK 178


>gi|256819049|ref|YP_003140328.1| peptide deformylase [Capnocytophaga ochracea DSM 7271]
 gi|256580632|gb|ACU91767.1| peptide deformylase [Capnocytophaga ochracea DSM 7271]
          Length = 196

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 91/175 (52%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ + DP+LR+V   I      +  LI NM + M +  G+GLAA Q+G+  RL V+D  
Sbjct: 4   PIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVVDAS 63

Query: 65  DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A             +     FIN KI+  + D   + EGCLSIP  R DV R   IT+
Sbjct: 64  PFADDDELSEEEQTFLKDFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQITI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y D +   Q +   GL A  +QHE DH+ GILF D LS  KR +I  K++ + +
Sbjct: 124 EYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISK 178


>gi|160901540|ref|YP_001567121.1| peptide deformylase [Petrotoga mobilis SJ95]
 gi|160359184|gb|ABX30798.1| peptide deformylase [Petrotoga mobilis SJ95]
          Length = 178

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR+ ++ +E  + ++ +++D M   MY  DG+GLAA Q+G+  R  ++D ++  + K
Sbjct: 8   DPVLRKRAKKVENFDDNLKDVVDEMFSTMYLYDGVGLAAPQVGISLRFFIMDSREE-NEK 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              V INP+II F  +   ++EGCLSIPD   DV R   + VRY D +         G  
Sbjct: 67  GKKVVINPEIIEFLGEEVSFEEGCLSIPDIFEDVVRPEGVRVRYQDLSGNVIEEELHGYQ 126

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           A   QHE DHL GILF D L  +K+  + K++++L++
Sbjct: 127 ARIFQHETDHLEGILFTDKLPIVKKARLKKELNQLIE 163


>gi|291167035|gb|EFE29081.1| peptide deformylase [Filifactor alocis ATCC 35896]
          Length = 147

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+VSRP+ ++   I  LI +M++ MY  DG+GLAA Q+GVL R++VID+ +     
Sbjct: 11  DEVLRKVSRPVTEMTPRIEQLIGDMIDTMYQYDGVGLAAPQVGVLRRVIVIDIGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            PMVFINP+I+   +     QEGCLSIP    DVKR   + V   +   +   +  D LL
Sbjct: 66  GPMVFINPEIVE-QEGEQCGQEGCLSIPGVYMDVKRPNHVVVTAKNEKMEDIRVEGDELL 124

Query: 131 ATCLQHELDHLNGILFIDHLSR 152
           A  L HE+DHLNGILF D   R
Sbjct: 125 ARALCHEIDHLNGILFKDIAER 146


>gi|294673344|ref|YP_003573960.1| peptide deformylase [Prevotella ruminicola 23]
 gi|294473242|gb|ADE82631.1| peptide deformylase [Prevotella ruminicola 23]
          Length = 186

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 6/171 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ IF  P+LR+V+  I      + +LI +M E +  ++GIGLAA QIG   RLVVIDL 
Sbjct: 4   PIYIFGQPVLRKVAEDITPDYPQLKDLIGDMWETLAESEGIGLAAPQIGKPIRLVVIDLD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
               D    K    VFIN  I+ + + +  V +EGCLSIP     V R   I V + D N
Sbjct: 64  VLSDDLPEYKGFKQVFINAHIVEYDESNTDVSEEGCLSIPAIHEKVTRPTRIHVEWDDEN 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +H   + +G LA  +QHE DHL+G +F+D +S L++ +I  K+  L Q R
Sbjct: 124 FEHHDEWVEGYLARVMQHEFDHLDGKMFVDRISPLRKQLIKSKLRALTQGR 174


>gi|218439032|ref|YP_002377361.1| peptide deformylase [Cyanothece sp. PCC 7424]
 gi|218171760|gb|ACK70493.1| peptide deformylase [Cyanothece sp. PCC 7424]
          Length = 187

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 87/141 (61%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I K++  +  L   ML+ MYS++GIGLAA Q+ V  +L+VID +      
Sbjct: 24  DRVLRQPAKRIAKVDESVRQLAKEMLQTMYSSNGIGLAAPQVAVNKQLLVIDCEPDNPAN 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+I   S +   ++EGCLSIP    DV R   I V Y D + + + + A  LL
Sbjct: 84  PPLILINPQITQSSQELCQFEEGCLSIPGVYLDVVRPKVIEVSYKDESGRPKKLKATDLL 143

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  +QHE+DHLNGI+F+D + 
Sbjct: 144 ARVIQHEMDHLNGIMFVDRVG 164


>gi|77920127|ref|YP_357942.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380]
 gi|77546210|gb|ABA89772.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380]
          Length = 167

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 105/169 (62%), Gaps = 12/169 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPI----EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  K ++++P P L+ +  P+    E ++S I +LID M+   +S   +G+AA QIG+  
Sbjct: 1   MAVKDILLYPHPALKEICTPVTQCDENVDSLIQDLIDTMVAAGHS---VGVAAPQIGITR 57

Query: 57  RLVVIDLQDH--AHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           R+VV+D+       ++N   +V INP+I+   +  +  +EGC+S+PDY  +V R+  + V
Sbjct: 58  RVVVVDVSHSKLGRKENHGLIVMINPEILE-QEGRTASREGCMSVPDYTGNVTRAESVVV 116

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           +Y+D +   Q+I A G  A  LQHE+DHL+G+LF+D +S LK D+  +K
Sbjct: 117 QYLDRSGNKQVIRATGFEAIALQHEIDHLDGLLFLDRVSSLKTDLFRRK 165


>gi|327312425|ref|YP_004327862.1| peptide deformylase [Prevotella denticola F0289]
 gi|326944165|gb|AEA20050.1| peptide deformylase [Prevotella denticola F0289]
          Length = 214

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 95/174 (54%), Gaps = 16/174 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVIDL 
Sbjct: 32  PIYTYGQPVLRKVAADIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVIDLD 91

Query: 64  ---------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113
                    +D  H      FIN  I+   D +    +EGCLS+P     V R+  I V+
Sbjct: 92  VLSDTFPEYKDFRH-----AFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVK 146

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Y+D N      + DG LA  +QHE DHL+G +F DHLS  +R MI+ K+  L+Q
Sbjct: 147 YLDENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQ 200


>gi|255101749|ref|ZP_05330726.1| peptide deformylase 2 [Clostridium difficile QCD-63q42]
          Length = 146

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 97/152 (63%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +EKI+  I+ L+D+M E MY  DG+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +     + +  INP+II  S +  + +EGCLS+     +V+R  ++ VR ++ N +
Sbjct: 61  IDIGE-----DLIELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  + LLA    HE+DHL+GILF+D + +
Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146


>gi|169831745|ref|YP_001717727.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C]
 gi|238688341|sp|B1I504|DEF_DESAP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169638589|gb|ACA60095.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C]
          Length = 154

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 4/146 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  +R + KI   I  L  N+++ M  + G+GLAA QIGV  R++V++  +
Sbjct: 6   IVQYPDPILREKAREVRKITPQIERLAVNLVDTMRRSGGVGLAAPQIGVSKRVIVVEDPE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               KNP+V INP+I+    D    +EGCLS+P     V+R   +TVR  +   +     
Sbjct: 66  ----KNPIVLINPEIVRLEGDKETAEEGCLSVPGVWGQVERRMCLTVRGYNLEGKQVAYL 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
            +G  A   QHE+DHL+GI+F+D  +
Sbjct: 122 VEGFTARAFQHEIDHLDGIVFLDRAT 147


>gi|332666752|ref|YP_004449540.1| peptide deformylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335566|gb|AEE52667.1| Peptide deformylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 183

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 94/166 (56%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-L 63
           P+  +  P+LR+ +  I     D+  LI +M E MY  +G+GLAA QIG   RL +ID +
Sbjct: 4   PIYAYGHPVLRKKAEDITPDYEDLSKLIADMWETMYHAEGVGLAAPQIGRPIRLFIIDSI 63

Query: 64  QDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           Q     K+      VFIN + +        Y+EGCLSIPD R DV R   +T+RY+D N 
Sbjct: 64  QLEEKGKDVIGLKTVFINAEKVEEKGKIWAYEEGCLSIPDIRGDVDRLDTLTLRYLDENF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              I   DG+ A  +QHE DH+ GILF+++L  +K+ MI  ++  +
Sbjct: 124 VEHITTFDGINARVIQHEYDHIEGILFLEYLKPVKKAMIRGRLENI 169


>gi|295698622|ref|YP_003603277.1| peptide deformylase [Candidatus Riesia pediculicola USDA]
 gi|291157320|gb|ADD79765.1| peptide deformylase [Candidatus Riesia pediculicola USDA]
          Length = 151

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 94/144 (65%), Gaps = 2/144 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+V++P++ I S+I +L+ NM ++MY   GIGLAA Q+ +  R+VVI++     
Sbjct: 10  YPDSRLRKVAKPVKLITSEIKDLVRNMFKIMYEKGGIGLAATQVNIHQRIVVINISQR-E 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +K+ +  INP I++     S+ +E CLS+ +    + RS FI V+    + +  I +A G
Sbjct: 69  KKDELTLINPIILSSHGVISL-EERCLSVSNRAGCILRSKFIEVKTKSLSGKEFIFHAKG 127

Query: 129 LLATCLQHELDHLNGILFIDHLSR 152
           LL+ C+QHE+DHL+G LFID+L +
Sbjct: 128 LLSVCIQHEVDHLDGKLFIDYLRK 151


>gi|146276207|ref|YP_001166366.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554448|gb|ABP69061.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 167

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P V++PD  L+  + P++ +  +I  + D+M+E M +  G GLA  QIGV+ RL V+D 
Sbjct: 3   RPFVMYPDKRLKTAAAPVDAVTDEIHAIWDDMVETMDAMPGYGLAGPQIGVMLRLAVVDC 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D   R   +   NP+I+  S  F  ++EG  ++P   A + R   +TVR+++   + + 
Sbjct: 63  SD--SRGKAIRLANPEILHASGQFREHEEGSPNLPGATAVISRPRAVTVRFLNTAGEMEE 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                + AT +QH++DHLNG L+IDHLS LKR M+  K  K ++
Sbjct: 121 RDFVDIWATSVQHQIDHLNGKLYIDHLSALKRKMVIAKSEKYLR 164


>gi|254375239|ref|ZP_04990719.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548]
 gi|151572957|gb|EDN38611.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548]
          Length = 174

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 5/162 (3%)

Query: 9   FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  +  + D+
Sbjct: 10  YPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFFI--MYDN 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +NP +              +  +EGCLS P   A V R+  + ++ ++       I 
Sbjct: 68  LEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFGDEIEIE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q
Sbjct: 128 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQ 169


>gi|237736610|ref|ZP_04567091.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817]
 gi|229420472|gb|EEO35519.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817]
          Length = 169

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 4/157 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + + +LR V++ +E I+++I+ ++DNM+E M+   G+GLAA Q+G+  R+ V D  D   
Sbjct: 8   YGEAVLREVAQEVENIDNEILEILDNMVETMHEAKGVGLAAPQVGISKRMFVCDQGDGVV 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           RK     INP I   +D    ++EGCLS+P     V+R   I + Y++   +      +G
Sbjct: 68  RK----VINPIITPMTDKLMDFEEGCLSVPGIYKKVQRPEKIKIDYLNEKGEKVSEEVEG 123

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            LA  +QHE DHL+ +LF+D +S + + MI KK+  L
Sbjct: 124 FLAIIMQHEFDHLDAVLFVDKISPMAKRMINKKLQML 160


>gi|300813955|ref|ZP_07094254.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511929|gb|EFK39130.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 166

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 97/159 (61%), Gaps = 4/159 (2%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
            D ILR+ S+ +E  N  +  L+D+M E M S DG+GLAA Q+G+L RL+V+D +D  + 
Sbjct: 10  EDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIVVDDRDEEN- 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           ++    INP +IT  +   V +EGCLSIP  + DVKR+  I V Y   + + + I  +  
Sbjct: 69  QHRFYLINP-VITRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGKEEKINCEDF 127

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LA  +QHE+DHL+GIL+ D   ++ R  I +K   L +L
Sbjct: 128 LARIIQHEIDHLDGILYTDRAEKMYR--IVQKDDNLEEL 164


>gi|291514572|emb|CBK63782.1| peptide deformylase [Alistipes shahii WAL 8301]
          Length = 181

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 7/169 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+VI+ D +LRR   PI     D+  L ++M   +   +G+GLAA QIG   RL ++D  
Sbjct: 4   PIVIYGDEVLRRKCEPIAPDYPDVKKLAEDMFLTLEEAEGVGLAAPQIGKDIRLFIVDCT 63

Query: 65  DHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
             A  ++P        F+NP+I  FS++   Y EGCLS P   ADV RS  I +RYMD +
Sbjct: 64  PWAE-EDPSCADYKRAFVNPEIYEFSEEKKTYNEGCLSFPGIHADVARSLSIRMRYMDTD 122

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                    GL A  +QHE DH+ G++F D ++ L+R ++  K+  L +
Sbjct: 123 FVEHDEEFTGLKAWVIQHEYDHIEGVVFTDRIAPLRRQLLKSKLLNLAK 171


>gi|303271927|ref|XP_003055325.1| peptide deformylase [Micromonas pusilla CCMP1545]
 gi|226463299|gb|EEH60577.1| peptide deformylase [Micromonas pusilla CCMP1545]
          Length = 210

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 5/163 (3%)

Query: 5   PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL I  +P   LR  ++ I   ++++  L D M   MY +DG+GLAA Q+GV YRL+V +
Sbjct: 36  PLEIQKYPSAKLRDENKKIGVFDAELKKLADAMFAKMYESDGVGLAAPQVGVNYRLMVYN 95

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                 +   +V +NPKI+ FS +  +++EGCLS P   ADV+R   +T+   + N +  
Sbjct: 96  EAGERGKGAEVVMVNPKIVKFSKEKDMFEEGCLSFPAIYADVERPTAVTIEAQNVNGKKF 155

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +  DG  A   QHE DHL+G+LF D   R+  D++ K  ++L
Sbjct: 156 KMTLDGFQARVFQHEYDHLDGVLFHD---RMAADVVAKVRAEL 195


>gi|150396253|ref|YP_001326720.1| peptide deformylase [Sinorhizobium medicae WSM419]
 gi|150027768|gb|ABR59885.1| peptide deformylase [Sinorhizobium medicae WSM419]
          Length = 163

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +P+  L   + P+ + +  +  L  ++++ M +  GIG+ A  IG+L RL V
Sbjct: 1   MAVRSIIRYPNAALATATEPVSRFDESLRQLAHDLIDTMRAAPGIGITAPHIGILQRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+    A    P  F+NP+I+  S D + + EG +S+P    +V+R A + VR+     +
Sbjct: 61  IETDPQA---GPRSFVNPEILWQSADSTRHSEGSVSMPGIAEEVERPARVRVRFQTLEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                A GL+A CLQHE+D L+GI +I  LSRLKR+   K+  KL
Sbjct: 118 THEEEAAGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAIKRFEKL 162


>gi|322378951|ref|ZP_08053365.1| peptide deformylase [Helicobacter suis HS1]
 gi|322379805|ref|ZP_08054102.1| peptide deformylase [Helicobacter suis HS5]
 gi|321147773|gb|EFX42376.1| peptide deformylase [Helicobacter suis HS5]
 gi|321148627|gb|EFX43113.1| peptide deformylase [Helicobacter suis HS1]
          Length = 172

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 101/162 (62%), Gaps = 4/162 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           LV +PD  LR +S  +E  ++ +  L+++M E M +  GIGLAA+Q+GV  R+++I+L  
Sbjct: 7   LVHYPDKRLRGLSTEVEVFDTALHTLLEDMQETMLANKGIGLAAIQVGVAKRILIINLPR 66

Query: 66  HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              ++ P   +  INP ++  ++   +++EGCLS+P++  +++R A + + Y D     Q
Sbjct: 67  QDEQQYPEDCLEIINPTLL-HAEGQILWREGCLSVPEFYEEIQRFARVKLAYCDRYGDPQ 125

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + A  LL+  +QHE+DHLNGILF+D LS LKR    K+  K
Sbjct: 126 ELQASDLLSVAIQHEIDHLNGILFVDRLSMLKRKKFEKEFRK 167


>gi|315644089|ref|ZP_07897259.1| peptide deformylase [Paenibacillus vortex V453]
 gi|315280464|gb|EFU43753.1| peptide deformylase [Paenibacillus vortex V453]
          Length = 172

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 96/151 (63%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  K +V F DPILR+V+RP++ +N+  + ++D+M E +Y + G  GLAA QIG+L RL+
Sbjct: 1   MTVKAIVPFGDPILRKVARPVDPVNARALKILDDMAETLYDSAGRAGLAAPQIGILRRLI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  +       +  INP+I+  + +  V  E CLS P Y   V+R+  + V+ ++   
Sbjct: 61  VMDCGE-----GLIELINPEIVEMNGE-QVGPEACLSYPGYYGYVQRAHHVKVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  I+  +  LA C+QHE+DHLNG+LF+DH+
Sbjct: 115 ETIILEGEDYLARCMQHEIDHLNGLLFVDHV 145


>gi|315185956|gb|EFU19720.1| peptide deformylase [Spirochaeta thermophila DSM 6578]
          Length = 163

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 4/150 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D  LR+ +  + +I+  +  +++ M ++M+  +GIGLAA Q+G+  R  +     H    
Sbjct: 8   DETLRKRAVLVPEIDGRLARVVEGMFDLMHEANGIGLAAPQVGISQRFFIC----HVPEG 63

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+VFINP+I   S + + ++EGCLSIP   ADV R A + V   +   +   + ADGLL
Sbjct: 64  EPLVFINPEITATSPELATFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRMEADGLL 123

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           A  +QHE DHLNG+LF+D L   KR+ + +
Sbjct: 124 ARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153


>gi|146300287|ref|YP_001194878.1| peptide deformylase [Flavobacterium johnsoniae UW101]
 gi|189083071|sp|A5FGV5|DEF_FLAJO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146154705|gb|ABQ05559.1| peptide deformylase [Flavobacterium johnsoniae UW101]
          Length = 196

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DP+LR+V   I     ++   I NM E MY+  G+GLAA Q+G+  R+ VID  
Sbjct: 4   PIVGYGDPVLRKVGTAITPDYPNLKETIANMYETMYNAYGVGLAAPQVGLPIRIFVIDTT 63

Query: 65  DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             +  ++               FIN KI+    +   + EGCLSIPD R DV R   +T+
Sbjct: 64  PFSDDEDLPADEQKDLKGFKRTFINAKIVKEEGEEWSFNEGCLSIPDVREDVYRKPTVTI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Y + +   +    DGL+A  +QHE DH+ G+LF D +S LK+ +I KK+  + +
Sbjct: 124 EYCEEDFVMKTEVFDGLIARVIQHEYDHIEGVLFTDKISSLKKRLIQKKLKNITE 178


>gi|253699291|ref|YP_003020480.1| peptide deformylase [Geobacter sp. M21]
 gi|251774141|gb|ACT16722.1| peptide deformylase [Geobacter sp. M21]
          Length = 172

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 99/161 (61%), Gaps = 1/161 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +PDP L++ S P+  I      L  +M E MY   G+GLAA QIGV  R++VID+
Sbjct: 3   RTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVIDV 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V INP+I+  ++  +  +EGCLS+P + A+V+R A I V+ ++ + +   
Sbjct: 63  SGKDETPELIVAINPEIV-HAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLDGEEVT 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             AD LL+   QHE+DHL+G+LFIDHLS LK+ +  K+  +
Sbjct: 122 FRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQR 162


>gi|315924512|ref|ZP_07920733.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622216|gb|EFV02176.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 172

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 88/148 (59%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L  + DPILR+ +R I +IN  I  L  +MLE MY  DG+GLAA Q+GVL +LVV
Sbjct: 1   MAIRKLRYYDDPILRKRAREITEINDRIKTLAADMLETMYDDDGVGLAAPQVGVLRQLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      + P+  INP+I++ S    V  EGCLS PD    V+R  ++T R+ +   Q
Sbjct: 61  IDVG-----QGPITMINPEIVSQSGSI-VDSEGCLSFPDEAGYVERPEYVTARFTNLEGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +    LLA  + HELDHL G +FID
Sbjct: 115 RCEVKGHMLLARAICHELDHLKGEVFID 142


>gi|149370599|ref|ZP_01890288.1| peptide deformylase [unidentified eubacterium SCB49]
 gi|149356150|gb|EDM44707.1| peptide deformylase [unidentified eubacterium SCB49]
          Length = 196

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 97/171 (56%), Gaps = 12/171 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +  P+L+++++ I+K   ++  L+ NM E MY+  G+GLAA QIG+  R+ ++D  
Sbjct: 4   PIVAYGAPVLKKLAKDIDKDYPELDELLANMYETMYNASGVGLAAPQIGLPIRIFIVDAS 63

Query: 65  --------DHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                   D A ++        FIN KII  + D   + EGCLSIPD R DV R   I +
Sbjct: 64  PFSDDDELDPAEQEFLSTFKQTFINAKIIEETGDEWAFNEGCLSIPDVREDVFRKPDIVI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Y D + +       GL A  +QHE DH+ GILF D LS+LK+ +I +++ 
Sbjct: 124 EYYDEDFKKHTEKFTGLAARVIQHEYDHIEGILFTDKLSQLKKRLIKRRLE 174


>gi|110799951|ref|YP_696430.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|168210623|ref|ZP_02636248.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|168214221|ref|ZP_02639846.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|168217031|ref|ZP_02642656.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
 gi|169342685|ref|ZP_02863726.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|110674598|gb|ABG83585.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|169299191|gb|EDS81261.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|170711284|gb|EDT23466.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|170714299|gb|EDT26481.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|182380902|gb|EDT78381.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
          Length = 147

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 4/139 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+  R ++ IN  I  L+++M+E MY  +G+GLAA Q+G+L R+ V+D  D A  +
Sbjct: 11  DEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGSR 70

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              VFINP+I+  S +    +EGCLS+P     VKR+  I ++ +D N    ++ A+  L
Sbjct: 71  ---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFL 126

Query: 131 ATCLQHELDHLNGILFIDH 149
           A  +QHE DHL G+LFIDH
Sbjct: 127 ARAIQHEYDHLEGVLFIDH 145


>gi|331269686|ref|YP_004396178.1| peptide deformylase [Clostridium botulinum BKT015925]
 gi|329126236|gb|AEB76181.1| peptide deformylase [Clostridium botulinum BKT015925]
          Length = 156

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 6/149 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +  D ILR+  + +++IN  I+ LI++M E MY  DG+GLAA QIGVL RLVVID+ +  
Sbjct: 13  VNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVVIDVGE-- 70

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               P+  INP+II+     + Y EGCLS+P  +  V R   +  + ++   +   I+ +
Sbjct: 71  ---GPISLINPEIISSEGSQTDY-EGCLSLPGKQGKVTRPYKVVAKALNEKGEEVEIHGE 126

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRD 156
            LLA  + HELDHL+G+LF+D + + K +
Sbjct: 127 ALLARAICHELDHLDGVLFMDKVVKGKEE 155


>gi|182411922|ref|YP_001816988.1| peptide deformylase [Opitutus terrae PB90-1]
 gi|238692904|sp|B1ZMD5|DEF_OPITP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|177839136|gb|ACB73388.1| peptide deformylase [Opitutus terrae PB90-1]
          Length = 192

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 94/180 (52%), Gaps = 19/180 (10%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64
           +V + DP+LRR    I   +  +  L   ML  M    GIGLAA QIG   +L V+DL+ 
Sbjct: 5   IVHYNDPVLRRKGEKITAFDKALSQLAKEMLATMQEAAGIGLAAQQIGRPVQLCVVDLRR 64

Query: 65  ---------DHAHRKNPMVFINPKIITFSD-------DFSVYQEGCLSIPDYRADVKRSA 108
                    D A  K P+  I P IIT  +       D  + +EGCLS P  R DV R  
Sbjct: 65  AEIDFTWELDGA--KPPLDLIMPMIITNPEITPDRETDVYLVEEGCLSFPKIRGDVPRPD 122

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ITVRY D +     ++ DGLLA C+QHE+DHLNG+LFID + +  R  I   +  L ++
Sbjct: 123 AITVRYQDEHGTPHTLHCDGLLARCIQHEVDHLNGVLFIDRMEKKTRAAIDADVKTLAKI 182


>gi|197117031|ref|YP_002137458.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
 gi|197086391|gb|ACH37662.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
          Length = 172

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 98/161 (60%), Gaps = 1/161 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +PDP L++ S P+  I      L  +M E MY   G+GLAA QIGV  R++VID+
Sbjct: 3   RTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVIDV 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V INP+I+  ++  +  +EGCLS+P + A+V+R A I V+ ++   +   
Sbjct: 63  SGKDETPELIVAINPEIV-HAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLEGEEVT 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             AD LL+   QHE+DHL+G+LFIDHLS LK+ +  K+  +
Sbjct: 122 FRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQR 162


>gi|189461816|ref|ZP_03010601.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136]
 gi|189431410|gb|EDV00395.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136]
          Length = 184

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA Q+G+  R+VVI+L 
Sbjct: 4   PIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVINLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D    K+    +INP I+   ++    +EGCLS+P     VKR   I V Y+D + 
Sbjct: 64  VLSEDMPEFKDFRRAYINPHILETGEELVSMEEGCLSLPGIHEAVKRPDKIHVTYLDEDM 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                + +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +++
Sbjct: 124 NPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIKGKLNNMLK 171


>gi|325852042|ref|ZP_08171125.1| peptide deformylase [Prevotella denticola CRIS 18C-A]
 gi|325484598|gb|EGC87514.1| peptide deformylase [Prevotella denticola CRIS 18C-A]
          Length = 214

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 95/174 (54%), Gaps = 16/174 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVIDL 
Sbjct: 32  PIYTYGQPVLRKVAADIPLDYPDLQELIRNMFETNTASDGVGLAAPQIGKSIRVVVIDLD 91

Query: 64  ---------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113
                    +D  H      FIN  I+   D +    +EGCLS+P     V R+  I V+
Sbjct: 92  VLSDTFPEYKDFRH-----AFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVK 146

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Y+D N      + DG LA  +QHE DHL+G +F DHLS  +R MI+ K+  L+Q
Sbjct: 147 YLDENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQ 200


>gi|78355060|ref|YP_386509.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217465|gb|ABB36814.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 169

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 1/161 (0%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +PD  L      IE+I  +I  L  +M E MY  DGIGLAA Q+G   RL+V+D+
Sbjct: 3   REILTYPDRRLAIECEEIEEITDEIRQLAADMAETMYDADGIGLAAPQVGATCRLIVVDV 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                R++   +INP++          +EGCLS+P  R+ V R+  + +   D +     
Sbjct: 63  SGPEAREDLRTYINPRLELLEGKVDT-EEGCLSVPALRSKVTRTEKVRLHATDLDGNAVC 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           I ADGLL+ CLQHE+DHL+G LFID +SRLKR +   K+ K
Sbjct: 122 IDADGLLSICLQHEIDHLDGTLFIDKISRLKRSLYDNKVKK 162


>gi|85700131|gb|ABC74515.1| polypeptide deformylase [Helicobacter pylori]
 gi|85700141|gb|ABC74520.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 100/160 (62%), Gaps = 4/160 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +   ILR +S+ +   ++ +   + +M E M +++GIGLAA+Q+G+  R+++I+L     
Sbjct: 9   YSSKILRTISKEVVSFDAKLHQQLVDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDG 68

Query: 67  -AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ 
Sbjct: 69  VQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 128 ASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 167


>gi|153010428|ref|YP_001371642.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
 gi|151562316|gb|ABS15813.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
          Length = 166

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 90/147 (61%), Gaps = 3/147 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V +PD  LR V+ P+ + +SD+  L  ++L+ M +  GIG+ A  +G+  RLVV
Sbjct: 1   MTVRPIVSYPDKRLRAVAEPVTQFDSDLQELGTDLLDTMRAAPGIGITAPHVGISKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L        P  ++NP+I+  SD+   +QEG +S+P    DV+R A I +RY D +  
Sbjct: 61  LELPTEL---TPKFYVNPEIVWASDEKIHHQEGSVSMPGVVDDVERHARIKIRYQDLSGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
            Q   ++GLLA C QHE+D L+GI +I
Sbjct: 118 EQTEESEGLLAVCHQHEIDQLDGIFWI 144


>gi|147669331|ref|YP_001214149.1| peptide deformylase [Dehalococcoides sp. BAV1]
 gi|189083069|sp|A5FRA7|DEF_DEHSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146270279|gb|ABQ17271.1| peptide deformylase [Dehalococcoides sp. BAV1]
          Length = 167

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 86/143 (60%), Gaps = 4/143 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            P+P+LR+ ++ +  I+  I  LID+M+E M S DG GLAA Q+GV  RLVV    D   
Sbjct: 9   LPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVVFREPD--- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            K   V INP+II       V  EGCLSIP Y  ++ R+  +T + +D + +   I   G
Sbjct: 66  TKEATVLINPEIIKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGKACRIKGTG 124

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           ++A  L+HE +HL+GIL+IDHL 
Sbjct: 125 IVAQLLEHETEHLDGILYIDHLE 147


>gi|310642740|ref|YP_003947498.1| peptide deformylase [Paenibacillus polymyxa SC2]
 gi|309247690|gb|ADO57257.1| Peptide deformylase [Paenibacillus polymyxa SC2]
          Length = 159

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 88/140 (62%), Gaps = 6/140 (4%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAH 68
           PD +L +V++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+V+D  D H  
Sbjct: 4   PDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIVVDAGDEHGL 63

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            K     INP+I+   +   +  EGCLSIP    DV+R+  +TV+ ++   +   + A G
Sbjct: 64  IK----MINPEIVA-EEGEQLGPEGCLSIPGLNGDVRRAEKVTVKGLNREGKAITVTATG 118

Query: 129 LLATCLQHELDHLNGILFID 148
           LL+   QHE+DHLNG+LF D
Sbjct: 119 LLSRAFQHEIDHLNGVLFTD 138


>gi|254476440|ref|ZP_05089826.1| peptide deformylase [Ruegeria sp. R11]
 gi|214030683|gb|EEB71518.1| peptide deformylase [Ruegeria sp. R11]
          Length = 169

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 91/167 (54%), Gaps = 1/167 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V +PDP+L   + P+  I +D+  L  +ML+ MY   G GLAA Q+GVL R+ V
Sbjct: 1   MAVRPIVAWPDPVLSTPASPVIAI-TDVAALAQDMLDTMYGAPGRGLAAPQVGVLQRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       + P++ INP+I   SD      EGCLSIP     V+RS ++ + + D    
Sbjct: 60  MDTTWKDGTRAPLICINPEIKDRSDRHVSGPEGCLSIPGVSLTVERSEWVDLEWSDLQGV 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                 DG  A C+QHE DHL+GI+  D +S + R    K  +  V+
Sbjct: 120 RHCRRFDGFDAICIQHEYDHLDGIVTFDRVSAVARAEAEKTYNSYVE 166


>gi|146297087|ref|YP_001180858.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410663|gb|ABP67667.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 164

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 7/158 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           I+ D ILR+ S+ +EK +  + +L+D+M E MY  +GIGLAA Q+G+L R +V+D  D A
Sbjct: 6   IYEDEILRKKSKTVEKFDKRLHDLLDDMKETMYEANGIGLAAPQVGILKRAIVVDPGDGA 65

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                +  +NP+ I +S+   +  EGCLS+P+   +V+R   + VR  + + +   I A+
Sbjct: 66  -----IELVNPQ-IEYSEGSQIDIEGCLSVPNVWGEVERPKKVIVRGQNRHGEEIKIEAE 119

Query: 128 GLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164
            LLA  L HE+DHL+GILFID + R +  + + KK SK
Sbjct: 120 DLLARALCHEIDHLDGILFIDKVIRFVTEEEVEKKRSK 157


>gi|118496725|ref|YP_897775.1| peptide deformylase [Francisella tularensis subsp. novicida U112]
 gi|194324032|ref|ZP_03057807.1| peptide deformylase [Francisella tularensis subsp. novicida FTE]
 gi|208780004|ref|ZP_03247347.1| peptide deformylase [Francisella novicida FTG]
 gi|118422631|gb|ABK89021.1| peptide deformylase [Francisella novicida U112]
 gi|194321929|gb|EDX19412.1| peptide deformylase [Francisella tularensis subsp. novicida FTE]
 gi|208744008|gb|EDZ90309.1| peptide deformylase [Francisella novicida FTG]
          Length = 174

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 5/162 (3%)

Query: 9   FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  +  + D+
Sbjct: 10  YPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFFI--MYDN 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +NP +              +  +EGCLS P   A V R+  + ++ ++       I 
Sbjct: 68  LEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFGDEIEIE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q
Sbjct: 128 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQ 169


>gi|168207271|ref|ZP_02633276.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|170661355|gb|EDT14038.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
          Length = 147

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 4/139 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+  R ++ IN  I  L+++M+E MY  +G+GLAA Q+G+L R+ V+D  D A  +
Sbjct: 11  DEILRKKCRVVDDINDRIKILVEDMIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGSR 70

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              VFINP+I+  S +    +EGCLS+P     VKR+  I ++ +D N    ++ A+  L
Sbjct: 71  ---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFL 126

Query: 131 ATCLQHELDHLNGILFIDH 149
           A  +QHE DHL G+LFIDH
Sbjct: 127 ARAIQHEYDHLEGVLFIDH 145


>gi|193213195|ref|YP_001999148.1| peptide deformylase [Chlorobaculum parvum NCIB 8327]
 gi|238692654|sp|B3QPU5|DEF_CHLP8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|193086672|gb|ACF11948.1| peptide deformylase [Chlorobaculum parvum NCIB 8327]
          Length = 187

 Score =  118 bits (295), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 100/168 (59%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+  + DP+L   ++P++ ++S I  LI +M + MY   GIGLAA Q+G   RL+V+D+ 
Sbjct: 4   PINTYSDPVLTAKAKPLKGVDSSIRELIADMFDSMYKAPGIGLAAPQVGHSLRLLVVDIS 63

Query: 64  --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
             +++A  K PMV INP+I++ +   +  +EGCLS+P    DV R + IT+ Y D   + 
Sbjct: 64  TIKEYADYK-PMVVINPRIVSVAGR-NAMEEGCLSVPGVAGDVVRPSKITLHYRDEKFEE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                  ++A  LQHE+DHL+G LF+D + +  R  + K +  + Q R
Sbjct: 122 HTEEFSDMMARVLQHEIDHLDGTLFVDRMEKRDRRKVQKTLDAIKQGR 169


>gi|225028093|ref|ZP_03717285.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353]
 gi|224954563|gb|EEG35772.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353]
          Length = 158

 Score =  118 bits (295), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 87/136 (63%), Gaps = 5/136 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP L +V +P++KI   I  LI++M + MY   G+GLAA Q+G+L R+ VID+ D    +
Sbjct: 11  DPCLNKVCKPVQKITPSIETLIEDMFDTMYEARGVGLAAPQVGILRRICVIDVMD----E 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +P++ INP+II  + +    +EGCLSIP   A V R+ ++ V+  D      II  +GL 
Sbjct: 67  DPIILINPEIIETAGE-QTDEEGCLSIPGKCASVTRADYVKVKSFDMELNPVIIEGEGLR 125

Query: 131 ATCLQHELDHLNGILF 146
           A  LQHE+DHL+G+L+
Sbjct: 126 ARALQHEIDHLDGVLY 141


>gi|57234458|ref|YP_181493.1| peptide deformylase [Dehalococcoides ethenogenes 195]
 gi|123759709|sp|Q3Z8F6|DEF_DEHE1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|57224906|gb|AAW39963.1| peptide deformylase [Dehalococcoides ethenogenes 195]
          Length = 167

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 4/143 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            P+PILR+ ++ +  I+  I  LID+M+E M S DG GLAA Q+GV  RL+V    D   
Sbjct: 9   LPEPILRKKAKKVPSIDGSIQTLIDDMIETMKSADGAGLAAPQVGVSLRLIVFREPDA-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            K   V INP+I+       V  EGCLSIP Y  ++ R+  +T + +D + +   I   G
Sbjct: 67  -KEATVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGKAFRIKGTG 124

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           ++A  L+HE +HL+GIL+IDHL 
Sbjct: 125 VVAQLLEHETEHLDGILYIDHLE 147


>gi|260892750|ref|YP_003238847.1| peptide deformylase [Ammonifex degensii KC4]
 gi|260864891|gb|ACX51997.1| peptide deformylase [Ammonifex degensii KC4]
          Length = 154

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 87/143 (60%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR  ++P++KI   I  LI +M E MY   G+GLAA Q+GV  R++V+D   + ++ 
Sbjct: 14  DKVLREKAQPVDKITPQIQKLIRDMTETMYRAQGVGLAAPQVGVSLRVIVVDTGSNLYQ- 72

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                INP+I+    +    +EGCLSIP    +V R+A + VR +    +   I ADGLL
Sbjct: 73  ----LINPEIVAREGEEK-GREGCLSIPGVWGEVVRAASVLVRALTPEGREVSIEADGLL 127

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  LQHE+DHL+GILFID   ++
Sbjct: 128 ARALQHEIDHLDGILFIDRAEKV 150


>gi|262067438|ref|ZP_06027050.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693]
 gi|291378801|gb|EFE86319.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693]
          Length = 174

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 98/159 (61%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + D IL+++++ +E  +IN +    +D+M+E MY TDGIGLAA Q+GV  R+ V D    
Sbjct: 8   YGDDILKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRIFVCDDGTG 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             RK     INP I   +++   ++EGCLS+P     V+R   + ++Y++ N +     A
Sbjct: 68  KIRK----LINPIIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYINENGEAVEEIA 123

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + LLA  +QHE DHLNGILF++ +S + + +I KK++ +
Sbjct: 124 EDLLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANM 162


>gi|114330413|ref|YP_746635.1| peptide deformylase [Nitrosomonas eutropha C91]
 gi|114307427|gb|ABI58670.1| peptide deformylase [Nitrosomonas eutropha C91]
          Length = 168

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L +++  +  +  +I  L  NM E MY+  G+GLAA Q+ V  R+VVID  +   
Sbjct: 9   YPDERLHKIAAVVPSVTREIRILASNMAETMYAAAGVGLAATQVDVHKRVVVIDTSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+II  S   S  QEGCLS+P     V R+  ITVR  D + +   + A G
Sbjct: 67  RDELLVLINPEIIA-STGKSETQEGCLSVPGIFDKVSRAEQITVRATDIDGKSFEMDATG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA C+QHE+DHL G +F+++LS  K+  I  K+ K
Sbjct: 126 LLAVCIQHEMDHLIGKVFVEYLSPFKQSRILSKLKK 161


>gi|51892481|ref|YP_075172.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
 gi|81692121|sp|Q67PR5|DEF_SYMTH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|51856170|dbj|BAD40328.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
          Length = 217

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 3/149 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P  +LR+ ++P+ KIN+ I  L+D+M E MY+  G+GLAA Q+GV  RL+V+D QD
Sbjct: 6   IVKEPAEVLRKKAKPVTKINASIRKLLDDMTETMYAAPGVGLAAPQVGVSKRLIVVDPQD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            + +      INP+I+  ++ +    EGCLSIP    DV R   + V  +D   +   I 
Sbjct: 66  GSGQL--YQLINPEIVK-AEGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGKKVWID 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLK 154
           A+G LA   QHE+DHL+GIL+ D  + L+
Sbjct: 123 AEGYLARIFQHEIDHLDGILYTDKCTNLR 151


>gi|73748571|ref|YP_307810.1| peptide deformylase [Dehalococcoides sp. CBDB1]
 gi|289432597|ref|YP_003462470.1| peptide deformylase [Dehalococcoides sp. GT]
 gi|123773670|sp|Q3ZXA9|DEF_DEHSC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|73660287|emb|CAI82894.1| polypeptide deformylase [Dehalococcoides sp. CBDB1]
 gi|288946317|gb|ADC74014.1| peptide deformylase [Dehalococcoides sp. GT]
          Length = 167

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 4/143 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            P+P+LR+ ++ +  I+  I  LID+M+E M S DG GLAA Q+GV  RLVV    D   
Sbjct: 9   LPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVVFREPD--- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            K   V INP+I+       V  EGCLSIP Y  ++ R+  +T + +D + +   I   G
Sbjct: 66  TKEATVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGKACRIKGTG 124

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           ++A  L+HE +HL+GIL+IDHL 
Sbjct: 125 IVAQLLEHETEHLDGILYIDHLE 147


>gi|282882057|ref|ZP_06290698.1| peptide deformylase [Peptoniphilus lacrimalis 315-B]
 gi|281298087|gb|EFA90542.1| peptide deformylase [Peptoniphilus lacrimalis 315-B]
          Length = 166

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 4/159 (2%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
            D ILR+ S+ +E  N  +  L+D+M E M S DG+GLAA Q+G+L RL+V+D +D  + 
Sbjct: 10  EDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIVVDDRDEEN- 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           ++    INP +IT  +   V +EGCLSIP  + DVKR+  I V Y   + + + I     
Sbjct: 69  QHRFYLINP-VITRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGKEEKINCKDF 127

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LA  +QHE+DHL+GIL+ D   ++ R  I +K   L +L
Sbjct: 128 LARIIQHEIDHLDGILYTDRAEKMYR--IVQKDDNLEEL 164


>gi|188583614|ref|YP_001927059.1| peptide deformylase [Methylobacterium populi BJ001]
 gi|179347112|gb|ACB82524.1| formylmethionine deformylase [Methylobacterium populi BJ001]
          Length = 171

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 98/166 (59%), Gaps = 5/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV++PDP L R + P+      +  L  ++L+ + +   +GL A+ IG   R+VV
Sbjct: 1   MPARPLVLYPDPRLHRAAGPVTASGEGVRALAADVLDTLGAVSAMGLTAIHIGRPERVVV 60

Query: 61  IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           I LQ D  H     V+++P ++  S + + + EG +S+P     V+R A + VRY D + 
Sbjct: 61  IRLQPDEPH----AVYVDPVLVWASPERAAHPEGSVSMPGVVEPVERPARVRVRYRDLDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                 A+GL A CLQHE+D L+GI +ID LSRL+R+ + K+ +KL
Sbjct: 117 AEHEEEAEGLRAACLQHEIDQLDGIFWIDRLSRLRRERVLKRFAKL 162


>gi|16330073|ref|NP_440801.1| peptide deformylase [Synechocystis sp. PCC 6803]
 gi|2499924|sp|P73441|DEF_SYNY3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1652560|dbj|BAA17481.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
          Length = 187

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 87/140 (62%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I K++  I  L   ML+ MYS +GIGLAA Q+G+  +L+V+D +     +
Sbjct: 24  DKVLRQPAKRIAKVDDSIRKLAKEMLQTMYSANGIGLAAPQVGINKQLLVVDCEQDKPDE 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+I   S++  V +EGCLS+P+   DV R   I V Y D + + Q      L 
Sbjct: 84  PPLIMINPQITRTSEELCVVEEGCLSVPNVYMDVTRPRAIEVTYKDEHGRPQKRLFAELT 143

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A  +QHE+DHLNG++F+D +
Sbjct: 144 ARVIQHEMDHLNGVMFVDRV 163


>gi|89890524|ref|ZP_01202034.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7]
 gi|89517439|gb|EAS20096.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7]
          Length = 196

 Score =  117 bits (294), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DP+LR+V++ I     ++  +++NM E MY   G+GLAA Q+G+  R+ ++D  
Sbjct: 4   PIVAYGDPVLRKVAKDITPDYPNLDKVLENMWETMYGASGVGLAAPQVGMPIRIFLVDTS 63

Query: 65  DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                                 FIN  I+  + +   + EGCLSIP+ R DV R   +T+
Sbjct: 64  PFGDDPELTPEEQKELGSFKKAFINAHIVEENGEEWAFNEGCLSIPNVREDVFRPEEVTI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           RY D N +       GL+A  +QHE DH+ GILF D +S LK+ +I  K++ + +
Sbjct: 124 RYCDENFKEVTETYTGLMARVIQHEYDHIEGILFTDKISSLKKRLIKGKLANISK 178


>gi|258515528|ref|YP_003191750.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779233|gb|ACV63127.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
          Length = 164

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 89/150 (59%), Gaps = 6/150 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V   DP+LR+ + P++ INS I  L+ NM + MY   G+GLAA QIG+  R+VV+D+ +
Sbjct: 6   IVEVGDPVLRQKANPVKNINSSIHKLLKNMADTMYDAKGVGLAAPQIGISKRVVVVDIGE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  INP+II  S       EGCLSIP     V R++ I V+ ++ N +    +
Sbjct: 66  -----GLLELINPRIIKASGQ-ETDTEGCLSIPGTLGQVPRASKIQVQALNRNGEQVEYH 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             G +A  +QHELDHL+GILFID    L++
Sbjct: 120 VKGFMARAVQHELDHLDGILFIDKAESLRK 149


>gi|260591629|ref|ZP_05857087.1| peptide deformylase [Prevotella veroralis F0319]
 gi|260536429|gb|EEX19046.1| peptide deformylase [Prevotella veroralis F0319]
          Length = 186

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 6/169 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVIDL 
Sbjct: 4   PVYTYGQPVLRKVAEDIPLDYPDLQQLIQNMFETNTASDGVGLAAPQIGKSIRVVVIDLD 63

Query: 65  DHA-----HRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
             +     ++     FIN  I+ F D +    +EGCLS+P     V R+  I V+Y+D N
Sbjct: 64  VLSDTFPEYKGFRHAFINGHILEFDDSETETLEEGCLSLPGIHESVTRAKRIYVKYVDEN 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                 + +G LA  +QHE DHL+G +F DHLS  ++ MI  K+  L+Q
Sbjct: 124 LVEHEEWIEGYLARVIQHEFDHLDGKVFTDHLSPFRKQMINSKLKALLQ 172


>gi|114766696|ref|ZP_01445635.1| peptide deformylase [Pelagibaca bermudensis HTCC2601]
 gi|114541086|gb|EAU44141.1| peptide deformylase [Roseovarius sp. HTCC2601]
          Length = 164

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 97/166 (58%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  + P+E I  +I  +  +M++ M +  G+GL A QIGV+ RL V
Sbjct: 1   MTARPCIPWPDKRLRSPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P+   NP+I+  S     + E   ++P   A ++R   +TVR++  N  
Sbjct: 61  VDASE--ERGQPVRMANPEILHASVKLRSHDEASPNLPGVWAKIERPRAVTVRFL--NEA 116

Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +I   D  GL AT +QH++DHLNG ++ DHLS++KRD++ ++  K
Sbjct: 117 GEIEERDFVGLWATSVQHQIDHLNGKMYFDHLSKVKRDILLRRAKK 162


>gi|195953865|ref|YP_002122155.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933477|gb|ACG58177.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
          Length = 171

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 98/164 (59%), Gaps = 3/164 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           +V FP+ IL+R + P++ I+++I  +I  M E MY  DGIGLAA Q+ +   ++VID   
Sbjct: 4   IVTFPNEILKRKTNPVKSIDAEIKEIIKEMKETMYKNDGIGLAANQVNIPLSIMVIDTTS 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           ++    K   V INP ++    +   ++EGCLS P  + +V R+  IT++ ++   +  I
Sbjct: 64  REDDQEKFKDVLINPTVLAKEGEIK-FKEGCLSFPGLQVEVIRAKEITIKAINECEEEVI 122

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   GL A   QHE DHLNGI F+D LS +K+ +  +K  K+++
Sbjct: 123 LNLSGLPAIVFQHEFDHLNGITFLDRLSGIKKRLALEKYQKMLK 166


>gi|296273945|ref|YP_003656576.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299]
 gi|296098119|gb|ADG94069.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299]
          Length = 170

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 4/164 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61
           + ++ +P+ +LR  S+ + K + ++  L+D+M E M +  G+GLAA+Q+ V   +++I  
Sbjct: 3   REVITYPNKLLREKSKDVVKFDDELHTLLDDMYETMIAQSGVGLAAIQVAVPLNVLIILI 62

Query: 62  -DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D   + + +  INPKI T  D   V+ EGCLS+P +  DVKR+  I V Y D    
Sbjct: 63  PDENDIQAKDSLIEAINPKI-THKDGIQVFTEGCLSVPGFNEDVKRAQHIIVEYQDRFGN 121

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +Q +  +  LA   QHE+DHL G LFI+ LS +KR    K+  K
Sbjct: 122 NQKMETEDFLAVAWQHEMDHLEGHLFIEKLSLMKRKKFEKEYKK 165


>gi|253681963|ref|ZP_04862760.1| peptide deformylase [Clostridium botulinum D str. 1873]
 gi|253561675|gb|EES91127.1| peptide deformylase [Clostridium botulinum D str. 1873]
          Length = 149

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  + +++IN  I+ LI++M E MY  DG+GLAA QIGVL RLVV
Sbjct: 1   MALRNIRVNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D +     +  INP+II++    + Y EGCLS+P  +  V R   +  + ++   +
Sbjct: 61  IDVGDGS-----ISLINPEIISYEGSQTDY-EGCLSLPGKQGKVTRPYKVIAKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              I  +GLLA  + HELDHL+G+LF+D +
Sbjct: 115 EVEINGEGLLARAICHELDHLDGVLFMDKV 144


>gi|257871146|ref|ZP_05650799.1| formylmethionine deformylase [Enterococcus gallinarum EG2]
 gi|257805310|gb|EEV34132.1| formylmethionine deformylase [Enterococcus gallinarum EG2]
          Length = 163

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 94/149 (63%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LRR  +P+  I  +++ L+++M E M + DG+G+AA QIG   ++ ++
Sbjct: 1   MRYPIIIHPDDQLRRKPKPVSMITDELVQLLEDMYETMVAHDGVGIAAPQIGKNLQVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +    ++    INP+II  S + SV  EGCLSIP     VKR+  ITVRY D   + 
Sbjct: 61  EVDE----EDRFELINPEIIESSGE-SVDVEGCLSIPHTYGTVKRADEITVRYFDREGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA  +QHE+DHLNG+LFID +
Sbjct: 116 MEVQAFGYLARAIQHEIDHLNGVLFIDKM 144


>gi|189423599|ref|YP_001950776.1| peptide deformylase [Geobacter lovleyi SZ]
 gi|189419858|gb|ACD94256.1| peptide deformylase [Geobacter lovleyi SZ]
          Length = 169

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 106/167 (63%), Gaps = 7/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  +P++ +P P+L++++  +  ++  I  L+ ++++ M +  G +G+AA QIGV  R+ 
Sbjct: 1   MAVQPILKYPHPLLKKMAHRVAALDEPIHTLVQDLIDTMQAGPGSVGVAAPQIGVGLRVC 60

Query: 60  VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+ +  H K+     +  +NP+II+ S   +V +EGC+S+PDY  DV+R+  ITVR++
Sbjct: 61  VVDVSNSRHGKDNNHGLLCMVNPEIISRSG-LAVMREGCMSVPDYTGDVERATEITVRFL 119

Query: 116 DC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           D  + Q + + A G  A  +QHE+DHL+G+LF+D +  +   +  +K
Sbjct: 120 DSRSGQQREVAASGFEAVAIQHEMDHLDGLLFLDRIISVSTGLFRRK 166


>gi|332981562|ref|YP_004463003.1| peptide deformylase [Mahella australiensis 50-1 BON]
 gi|332699240|gb|AEE96181.1| peptide deformylase [Mahella australiensis 50-1 BON]
          Length = 165

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 88/142 (61%), Gaps = 4/142 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           F DPILR+ +RP+ KI+  ++ L+D+M+E M   +G+GLAA Q+G+L R+VVI   D   
Sbjct: 9   FKDPILRKKARPVVKIDKRLLTLLDDMVETMKKAEGVGLAAPQVGILKRVVVIADMDE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +  INP+II  S +  V  EGCLS P     VKR   +TVR MD   + + +   G
Sbjct: 67  -DKIIELINPEIIAQSGE-QVGPEGCLSFPGMSGTVKRPEQVTVRAMDRKGEIREVTGTG 124

Query: 129 LLATCLQHELDHLNGILFIDHL 150
           ++A    HE+DHL+GI+F+D +
Sbjct: 125 IIARAFCHEIDHLDGIVFLDKV 146


>gi|325478778|gb|EGC81889.1| peptide deformylase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 155

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 87/138 (63%), Gaps = 3/138 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR+ S+ + ++   I  L+D+M E MY  DG+GLAA Q+G+L R++V+D  D     
Sbjct: 11  DPLLRKKSKVVPEVTDRIKVLLDDMAETMYQADGVGLAAPQVGILKRVIVVDPHDET--T 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  +NP+II  +D   V  EGCLSIP++ A VKR   + V+Y+D +   +I  A G  
Sbjct: 69  GLVKLVNPEIIE-ADGEQVGVEGCLSIPNFNATVKRPEHVKVKYIDEDGNEKIWDAHGFP 127

Query: 131 ATCLQHELDHLNGILFID 148
           A  L HE+DHL+GILF D
Sbjct: 128 AVILSHEIDHLDGILFRD 145


>gi|310815112|ref|YP_003963076.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
 gi|308753847|gb|ADO41776.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
          Length = 163

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 6/164 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P V++P P+LR+ +  +E I  +I  L D M+E M +  G+GLAAVQ+GV   L V+D 
Sbjct: 3   RPFVMWPAPVLRKPAAQVEAITPEITALWDEMVEAMDAMPGVGLAAVQLGVPLALAVVDA 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D   R   +   NP+I+  S     ++E   ++P   A + R   +TVR++  NA  ++
Sbjct: 63  SD--ARGQAIRMANPEILHASVQLREHEEASPNLPGISAVISRPRAVTVRFL--NAWGEV 118

Query: 124 IYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              D  GL AT +QH++DHL G ++ D LS++KRDM  +K  K 
Sbjct: 119 EERDLVGLWATSMQHQIDHLAGKMYFDRLSKIKRDMFLRKARKF 162


>gi|291563557|emb|CBL42373.1| peptide deformylase [butyrate-producing bacterium SS3/4]
          Length = 158

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 89/148 (60%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D IL +  +P++++N   + LI++M E MY  +G+GLAA Q+GV  R+VV
Sbjct: 1   MAIRQIRTIGDEILTKECKPVKEMNERTLELIEDMFETMYENNGVGLAAPQVGVRKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D     N  V INP+I+  S      QEGCLS+P     V R+  +  + ++ N +
Sbjct: 61  IDVED----GNQYVLINPEILETSGS-QTGQEGCLSVPGKCGQVTRADHVKAKALNENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              I ADGLLA C+ HE DHL+G L++D
Sbjct: 116 EYEIEADGLLARCILHECDHLDGKLYVD 143


>gi|330991623|ref|ZP_08315574.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1]
 gi|329761642|gb|EGG78135.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1]
          Length = 173

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ FP   L++ + P++  ++    L  ++LE M++  GIG+ A  +G+L RLVVIDL 
Sbjct: 5   PIIRFPHACLQQAAAPVDATSARTTELARDLLETMHAAPGIGITACHVGMLLRLVVIDLP 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P    NP+II      +  +EG +S+P   A V R A + VRY   +      
Sbjct: 65  GG---NGPQARANPEIIWQDTATATAEEGSVSMPGIHAPVTRPARVRVRYTGLDGLMVEE 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            A+GLLA CLQHE+D +NGI +   LS L+RD   K+ S+  +L
Sbjct: 122 EAEGLLAACLQHEIDQINGIFWTRRLSPLRRDRAMKRYSRQTRL 165


>gi|291277234|ref|YP_003517006.1| polypeptide deformylase [Helicobacter mustelae 12198]
 gi|290964428|emb|CBG40278.1| polypeptide deformylase [Helicobacter mustelae 12198]
          Length = 171

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 93/147 (63%), Gaps = 5/147 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----Q 64
           +P P+LR+ S+ ++  ++ +   +D+M + M   +G+GLAAVQ+G L+R++++++     
Sbjct: 9   YPHPLLRQKSKEVQNFDASLHAFLDDMYDTMLEREGVGLAAVQVGRLHRILLVNIPRQED 68

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              ++++ +  INP +I   ++   + EGCLS+P +  +VKR   IT+ Y D     Q++
Sbjct: 69  GKQYKEDLLEIINP-VILHQEEEIFWNEGCLSVPGFYEEVKRYGSITLGYQDRFGGEQVL 127

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
            A G LA  LQHE+DHL GILFID LS
Sbjct: 128 RAQGFLAVALQHEMDHLEGILFIDKLS 154


>gi|257066166|ref|YP_003152422.1| peptide deformylase [Anaerococcus prevotii DSM 20548]
 gi|256798046|gb|ACV28701.1| peptide deformylase [Anaerococcus prevotii DSM 20548]
          Length = 158

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 3/138 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR+ S+ + +I   I  L+D+M + MY  DG+GLAA Q+G+L R++V+D  D     
Sbjct: 11  DPILRKTSKLVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIVVDPHDDT--T 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  +NP+II  SD   +  EGCLSIP++ A VKR   + V+Y+D     +I  A G  
Sbjct: 69  GLVKLVNPEIIE-SDGEQIGIEGCLSIPNFNATVKRPEHLKVKYLDEEGNEKIWDAHGFP 127

Query: 131 ATCLQHELDHLNGILFID 148
           A  L HE+DHL+GILF D
Sbjct: 128 AEILSHEIDHLDGILFRD 145


>gi|168186792|ref|ZP_02621427.1| peptide deformylase [Clostridium botulinum C str. Eklund]
 gi|169295112|gb|EDS77245.1| peptide deformylase [Clostridium botulinum C str. Eklund]
          Length = 150

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 86/140 (61%), Gaps = 6/140 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+  R + +I+  I+ LI++M E MY  DG+GLAA Q+G+L RLVVID+ +     
Sbjct: 11  DAILRKNCREVGEIDERILTLIEDMKETMYEADGVGLAAPQVGILKRLVVIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+  INP+II      + Y EGCLS+P  +  V R   +T + ++   +   I  +GLL
Sbjct: 66  GPITLINPEIIESEGSQTDY-EGCLSLPGKQGKVTRPYKVTAKALNEKGEQVKIKGEGLL 124

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A  + HELDHL+G LFID +
Sbjct: 125 ARAICHELDHLDGTLFIDKV 144


>gi|253987938|ref|YP_003039294.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779388|emb|CAQ82549.1| peptide deformylase 2 [Photorhabdus asymbiotica]
          Length = 168

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  LR+    +  + + I  LID+ML+ MYSTD GIGLAA Q+G    ++
Sbjct: 1   MATLEILTIPDERLRQKCVEVTNVEA-IQGLIDDMLDTMYSTDNGIGLAAPQVGRKEAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +ID+   A R  P++ +NPKI+   D   + QEGCLS+P Y ADV+R   + V  ++ + 
Sbjct: 60  IIDIS--ATRDEPLILVNPKIVE-KDRSVIGQEGCLSVPGYYADVERFEKVKVEALNRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
           +   + ++  LA  +QHE+DHL+G +FID+LS LKR M
Sbjct: 117 ETITVESEDFLAIVMQHEIDHLHGKIFIDYLSPLKRQM 154


>gi|149911294|ref|ZP_01899915.1| peptide deformylase [Moritella sp. PE36]
 gi|149805609|gb|EDM65611.1| peptide deformylase [Moritella sp. PE36]
          Length = 168

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 87/142 (61%), Gaps = 6/142 (4%)

Query: 15  RRVSRPIEKIN--SDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           +++  P EK+   S +  LID+ML+ MY TD GIGLA+ Q+G    +VVID+ +   R  
Sbjct: 12  KKLEIPAEKVADVSTVQTLIDDMLDTMYKTDDGIGLASTQVGRKEAVVVIDISEG--RNE 69

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           PMV INP ++   +  S  QEGCLSIP Y ADV+R   + V  +D       I  DG LA
Sbjct: 70  PMVLINPVVVEGENKES-GQEGCLSIPGYYADVERFTKVKVTALDREGNEIEINDDGFLA 128

Query: 132 TCLQHELDHLNGILFIDHLSRL 153
             +QHE+DHL G LFID+LS L
Sbjct: 129 IAMQHEIDHLKGTLFIDYLSPL 150


>gi|21674275|ref|NP_662340.1| polypeptide deformylase [Chlorobium tepidum TLS]
 gi|25452909|sp|Q8KCG7|DEF_CHLTE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21647445|gb|AAM72682.1| peptide deformylase [Chlorobium tepidum TLS]
          Length = 187

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+  + DP+L   ++P++ ++S I  LI  M + MY   GIGLAA Q+G   RLVV+D+ 
Sbjct: 4   PINTYSDPVLAMKAKPLKGVDSAIEELIAEMFDTMYKAPGIGLAAPQVGHSLRLVVVDIS 63

Query: 64  --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
             +++A  K PMV INP+I+      S+ +EGCLS+P    +V R + IT+ Y D   + 
Sbjct: 64  TIKEYADFK-PMVVINPRIVAVRGR-SLMEEGCLSVPGIAGNVVRPSAITLHYRDEKFEE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                  ++A  LQHE+DHL+G LF+D + +  R  I K++  + + R
Sbjct: 122 HTADFHSMMARVLQHEIDHLDGTLFVDRMDKRDRRKIQKELDAIAEGR 169


>gi|154175184|ref|YP_001407439.1| peptide deformylase [Campylobacter curvus 525.92]
 gi|112803277|gb|EAU00621.1| peptide deformylase [Campylobacter curvus 525.92]
          Length = 174

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 91/150 (60%), Gaps = 4/150 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P+  L  VS+ +E  + ++  L+D+M E M + DGIGLAA+Q+GV  R+ +++L +   
Sbjct: 8   YPNKKLYEVSKEVETFDEELHKLLDDMYETMIAKDGIGLAAIQVGVAKRIFIVNLSNEEG 67

Query: 69  ---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + + +  INP+         VYQEGCLS+P +  DVKR+  + +++ D   Q + I 
Sbjct: 68  VQDKADLIEIINPEF-ELKVGECVYQEGCLSVPGFYEDVKRAERVKIKFQDRFGQERQIE 126

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            DGLLA  LQHE DHL+G LFI+ +   KR
Sbjct: 127 TDGLLAVALQHENDHLDGHLFIEKIGYNKR 156


>gi|163743815|ref|ZP_02151188.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161382964|gb|EDQ07360.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
          Length = 165

 Score =  117 bits (292), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  +  + +I  + + L  +M++ M +  G+GLAA QIGVL RL V
Sbjct: 1   MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID    + R   +   NP+I+  S     ++E   ++P   A +KR   +TVRYMD    
Sbjct: 61  ID--GSSERGRAVRLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETG- 117

Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              +  D  G+ AT +QH+LDHLNG ++ D LS++KRDM+ +K  KL
Sbjct: 118 -ATVERDFVGIEATSVQHQLDHLNGKMYFDKLSKVKRDMLIRKAKKL 163


>gi|17433052|sp|Q9FV54|DEF1B_SOLLC RecName: Full=Peptide deformylase 1B, chloroplastic; Short=PDF 1B;
           AltName: Full=Polypeptide deformylase; Flags: Precursor
 gi|11320950|gb|AAG33972.1| peptide deformylase-like protein [Solanum lycopersicum]
          Length = 279

 Score =  117 bits (292), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 89/160 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  ++++  L+D M ++MY TDGIGL+A Q+G+  +L+V +   
Sbjct: 89  IVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNAAG 148

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP++  +S     Y+EGCLS P    DVKR   + V   D N     I 
Sbjct: 149 ERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFEIS 208

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              L A   QHE DHL G+LF D ++    D I +K+  L
Sbjct: 209 LSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVAL 248


>gi|258647932|ref|ZP_05735401.1| peptide deformylase [Prevotella tannerae ATCC 51259]
 gi|260851771|gb|EEX71640.1| peptide deformylase [Prevotella tannerae ATCC 51259]
          Length = 185

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 10/169 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61
           P+  +  P+LR+V++ IE     +  LI++M E M  +DG+GLAA QIG   R++VI   
Sbjct: 4   PIYTYGQPVLRKVAQDIEADFPGLEQLIEDMYETMDKSDGVGLAAPQIGKAIRVIVISLD 63

Query: 62  ----DLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
               D  ++A  ++   +INP II F D + S  +EGCLS+P     VKR   I V+Y D
Sbjct: 64  VLKEDFPEYAGFRH--AYINPHIIEFDDSEISTLEEGCLSLPGIHEPVKRPTRIHVQYRD 121

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            N +    + +G LA  +QHE+DHL G +F D +S L++ M+  K++ +
Sbjct: 122 ENFEPHDEWVEGYLARVMQHEIDHLEGHVFTDRISPLRKQMVKNKLNAI 170


>gi|260574965|ref|ZP_05842967.1| peptide deformylase [Rhodobacter sp. SW2]
 gi|259022970|gb|EEW26264.1| peptide deformylase [Rhodobacter sp. SW2]
          Length = 163

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 5/148 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P++ +PD    R++ P + +   +D+  L  +ML  MY+  G GLAA QIG+L R+ V+D
Sbjct: 5   PILCWPD---ARLATPCDPVAPGADLRALAADMLATMYAATGRGLAAPQIGILQRVFVMD 61

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                 R  P V +NP+I+  S+      EGCLS+P    D+ R A I +R+ D +    
Sbjct: 62  TGWKEGRPAPQVLVNPEILWRSEACKTVAEGCLSLPGISPDISRPAEIRLRWRDLDGTPH 121

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150
             +  G  ATC QHE+DHL+GIL +DHL
Sbjct: 122 EAHLTGFAATCAQHEIDHLDGILTLDHL 149


>gi|283955379|ref|ZP_06372878.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414]
 gi|283793139|gb|EFC31909.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414]
          Length = 676

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV+K ++ +P+P L   S  + K ++++ NL+D+M E M +++G+GLAA+Q+ V  R+++
Sbjct: 1   MVRK-IITYPNPKLFLSSETVNKFDAELHNLLDDMYETMIASNGVGLAAIQVDVPLRVLL 59

Query: 61  IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++    D   +++ +  INP+II   ++     EGCLS+PD+  +VKR   + ++Y D 
Sbjct: 60  VNIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHVLLKYQDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             + + + A G LA  +QHE DHLNG LFI+ +S  KR
Sbjct: 120 FGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157


>gi|308535392|ref|YP_002140756.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
 gi|308052737|gb|ACH40960.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
          Length = 184

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 107/169 (63%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + +V +P+ IL+   + +E+I+  +  L+D++++ M++  G +G+A+ QIGV  R+ 
Sbjct: 17  MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMHAGPGSVGVASPQIGVSLRVC 76

Query: 60  VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           VID+  + H K+     ++ INP+I+  S   +V +EGC+S+PDY  DV+RS  +T+R+ 
Sbjct: 77  VIDVSKNRHGKDNNHGLLLMINPEILARSG-AAVMREGCMSVPDYTGDVERSTELTLRFT 135

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +   +   A G  A  +QHELDHL+G+LF+D ++ LK  +  +K  K
Sbjct: 136 EPDGTVREFEASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 184


>gi|253702639|ref|YP_003023828.1| peptide deformylase [Geobacter sp. M21]
 gi|251777489|gb|ACT20070.1| peptide deformylase [Geobacter sp. M21]
          Length = 168

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 107/169 (63%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + +V +P+ IL+   + +E+I+  +  L+D++++ M +  G +G+A+ QIGV  R+ 
Sbjct: 1   MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMQAGPGSVGVASPQIGVSLRVC 60

Query: 60  VIDLQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           VID+  + H K+     ++ INP+I+  S   +V +EGC+S+PDY  DV+RS  +T+R+ 
Sbjct: 61  VIDVSKNRHGKDNNHGLLLMINPEILARSG-AAVMREGCMSVPDYTGDVERSTELTLRFT 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +   + I A G  A  +QHELDHL+G+LF+D ++ LK  +  +K  K
Sbjct: 120 EPDGTVREIDASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 168


>gi|327402962|ref|YP_004343800.1| peptide deformylase [Fluviicola taffensis DSM 16823]
 gi|327318470|gb|AEA42962.1| peptide deformylase [Fluviicola taffensis DSM 16823]
          Length = 198

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 95/177 (53%), Gaps = 14/177 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DP+L++ +  I+    ++  LI++M E MY   G+GLAA QI    RL V+D  
Sbjct: 4   PIVAYGDPVLKKEAVEIDANYPELKKLIEDMFETMYEASGVGLAAPQINRSIRLFVVDGS 63

Query: 65  DHAH---------RKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
             A          +   M     VFINP I   + +   + EGCLSIP  R +V R   I
Sbjct: 64  PFAETDEDEEEDPKAEGMEGFKRVFINPIIEEETGESWGFHEGCLSIPKIREEVMRKEKI 123

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + Y D N Q    + DG  A  +QHE DH+ G+LF DHLS LKR +++K++  + Q
Sbjct: 124 RITYYDENWQLHDEWFDGYKARIIQHEYDHIEGVLFTDHLSVLKRRLLSKRLQNISQ 180


>gi|149913451|ref|ZP_01901984.1| peptide deformylase [Roseobacter sp. AzwK-3b]
 gi|149812571|gb|EDM72400.1| peptide deformylase [Roseobacter sp. AzwK-3b]
          Length = 165

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 94/158 (59%), Gaps = 2/158 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR  + P+E I  ++  + D+M++ M +  G+GLAA QIGV+ RL V+D  +   
Sbjct: 9   WPDKRLRSPAAPVEAITDEVRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAVVDASET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +   NP+I+  S +   ++E   ++P   A +KR   +TVR+++   + +     G
Sbjct: 67  RGQAVRMANPEILHSSIELRSHEEASPNLPGVSAAIKRPRAVTVRFLNTQGEMEERDFVG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           L AT +QH++D L G LF+D LS++KRDM+ +K  KL 
Sbjct: 127 LWATSVQHQIDQLEGRLFVDRLSKVKRDMLLRKARKLA 164


>gi|118594097|ref|ZP_01551444.1| peptide deformylase [Methylophilales bacterium HTCC2181]
 gi|118439875|gb|EAV46502.1| peptide deformylase [Methylophilales bacterium HTCC2181]
          Length = 165

 Score =  117 bits (292), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 97/153 (63%), Gaps = 3/153 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP L +V++ +  ++     LI +M E MY ++GIGLAA Q+    R++VID+ D
Sbjct: 6   ILTYPDPNLHKVAKRVINVDEVHKKLIKDMAETMYGSNGIGLAATQVNFHERIIVIDISD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + + +  INP+II   +    Y+EGCLS+P +   V+R  +I V+ +D   +   I 
Sbjct: 66  D--KNDLLTLINPEIIQ-KEGKQEYEEGCLSVPGFYEAVERFDYIKVQSLDNRGKSFEIE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           A GLL+ C+QHE+DHL G +F+++LS LK++ I
Sbjct: 123 AHGLLSVCIQHEMDHLEGKVFVEYLSPLKQNRI 155


>gi|227488838|ref|ZP_03919154.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542166|ref|ZP_03972215.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091260|gb|EEI26572.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181995|gb|EEI62967.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 177

 Score =  117 bits (292), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 94/168 (55%), Gaps = 7/168 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M++K L +  DP+L   + P++++ +    L+ +MLE M S  G+GLAA Q+GVL R+ V
Sbjct: 1   MIRK-LRLMGDPVLVSEAEPVDEVTASTKTLVSDMLETMDSAGGVGLAANQVGVLQRVFV 59

Query: 61  IDLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D        NP         INP      ++  + QEGCLSIPD  AD +R   + V  
Sbjct: 60  YDCPVDDSDPNPDREYKRGAIINPVWEPVGEEMQLGQEGCLSIPDVYADTERYMNVHVTG 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +D N  +    A GLLA C+QHE DHL+G+LFI  L++ +R    K++
Sbjct: 120 LDENGDNVDFEATGLLARCIQHETDHLDGVLFIKRLTKERRKEAMKEI 167


>gi|228473115|ref|ZP_04057872.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275697|gb|EEK14474.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
          Length = 198

 Score =  116 bits (291), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 96/174 (55%), Gaps = 14/174 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DP+LR+   PI K   ++  LI++M + MY ++G+GLAA Q+G+  RL V+D +
Sbjct: 4   PIVAYGDPVLRKECMPIAKDYPELPKLIEDMYQTMYHSNGVGLAAPQVGLAIRLFVVDTE 63

Query: 65  DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                 +               FIN KI+    +   + EGCLSIP    DV R   I +
Sbjct: 64  PFCENDDLSDAERDYLKGFKKAFINAKILKEEGEPWPFSEGCLSIPGISEDVLRKPTIVI 123

Query: 113 RYMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Y D + A H   ++ GL+A  +QHE DH+ GILF DHLS  K+ ++  K++ +
Sbjct: 124 EYQDEHFATHTETFS-GLVARVIQHEYDHIEGILFTDHLSSFKKQLLKNKLNNI 176


>gi|319902632|ref|YP_004162360.1| peptide deformylase [Bacteroides helcogenes P 36-108]
 gi|319417663|gb|ADV44774.1| peptide deformylase [Bacteroides helcogenes P 36-108]
          Length = 185

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+V+  I     ++  LIDNM E M + +G+GLAA QIG+  R+VV++L 
Sbjct: 4   PIYVYGQPVLRKVAEDITPDYPNLKELIDNMFETMDNAEGVGLAAPQIGLPIRVVVVNLD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               D    K+   V+IN  I+  + +    +EGCLS+P     V+R   I V+Y+D N 
Sbjct: 64  VLSDDMPEYKDFRKVYINAHILDVAGEEVSMEEGCLSLPGIHESVRRGDKIRVKYLDENM 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL+G +FIDH+S L++ MI  K+  L++
Sbjct: 124 VAHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLGSLLK 171


>gi|329961281|ref|ZP_08299447.1| peptide deformylase [Bacteroides fluxus YIT 12057]
 gi|328531946|gb|EGF58763.1| peptide deformylase [Bacteroides fluxus YIT 12057]
          Length = 186

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI NM E M + +G+GLAA QIG+  R+V ++L 
Sbjct: 4   PIYVYGQPVLRKVAEDITPDYPNLKELIGNMFETMDNAEGVGLAAPQIGLPIRVVTVNLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D    K     +IN  I+  + +    +EGCLS+P     VKR   I V+Y+D N 
Sbjct: 64  VLSEDLPEYKGFRKAYINAHILDVAGEEVSMEEGCLSLPGIHESVKRGDKIHVKYLDENL 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ L++
Sbjct: 124 EEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNALLK 171


>gi|27262480|gb|AAN87521.1| Polypeptide deformylase [Heliobacillus mobilis]
          Length = 166

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 92/147 (62%), Gaps = 6/147 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V   DP+LR  ++ + K N+++  L+D+M + M +  G+GLAA QIG+  R+VVID+ D
Sbjct: 20  IVKIGDPVLREKAKTVTKFNANLGRLMDDMYDTMVAAKGVGLAAPQIGISKRVVVIDVGD 79

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  +NP+I+  ++   +  EGCLSIPD++ +V RS  + V+  + N +  +I 
Sbjct: 80  -----GRIELVNPEILE-AEGSQIDVEGCLSIPDFQEEVNRSQRVKVKAQNRNGEEYVIE 133

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
             G LA  LQHE+DHL G+LF+D L +
Sbjct: 134 GTGFLARALQHEIDHLEGVLFVDLLDK 160


>gi|255560876|ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
 gi|223539350|gb|EEF40941.1| polypeptide deformylase, putative [Ricinus communis]
          Length = 282

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 88/160 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILRR ++ I+  + ++  L+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 92  IVEYPDPILRRKNKRIDTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVG 151

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V INP++  +S     + EGCLS P   ADV R   + +   D N     + 
Sbjct: 152 ERGEGEEIVLINPRLNKYSKKIVPFNEGCLSFPGIYADVLRPESVKIDARDINGARFTVN 211

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             GL A   QHE DHL GILF D ++    D I  ++  L
Sbjct: 212 LSGLPARVFQHEYDHLEGILFFDRMTDEVLDSIRAQLQAL 251


>gi|269119796|ref|YP_003307973.1| peptide deformylase [Sebaldella termitidis ATCC 33386]
 gi|268613674|gb|ACZ08042.1| peptide deformylase [Sebaldella termitidis ATCC 33386]
          Length = 162

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 94/160 (58%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ + +P+LR VS+ + +I  +I  ++D M+E M    G+GLAA Q+G+  R  V ++  
Sbjct: 3   IIYYGNPVLREVSKEVTEITDEIRQILDEMVETMREESGVGLAANQVGLTQRFFVGEVDG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +  +      INP+II F  +    +EGCLSIP     VKR   I VRY +   +     
Sbjct: 63  NVKK-----IINPEIIEFGKEEIELEEGCLSIPGIYKRVKRPEKIKVRYQNEKGETVEEE 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            + + A   QHELDHL+GILFID +S L + +I+K+++++
Sbjct: 118 LNEVWARVFQHELDHLDGILFIDKISPLNKRLISKRLAQI 157


>gi|237740379|ref|ZP_04570860.1| polypeptide deformylase [Fusobacterium sp. 2_1_31]
 gi|229422396|gb|EEO37443.1| polypeptide deformylase [Fusobacterium sp. 2_1_31]
          Length = 174

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 98/159 (61%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + D +L+++++ +E  +IN +    +D+M+E MY TDGIGLAA Q+GV  R+ V +    
Sbjct: 8   YGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYKTDGIGLAAPQVGVSKRVFVCEDGTG 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             RK     INP I   +++   ++EGCLS+P     V+R   + ++Y++ N +     A
Sbjct: 68  KIRK----LINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYLNENGEAVEEIA 123

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + LLA  +QHE DHLNGILF++ +S + + +I KK++ +
Sbjct: 124 EELLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANM 162


>gi|217077056|ref|YP_002334772.1| def peptide deformylase [Thermosipho africanus TCF52B]
 gi|217036909|gb|ACJ75431.1| def peptide deformylase [Thermosipho africanus TCF52B]
          Length = 165

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 99/162 (61%), Gaps = 6/162 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           ++ DPILR+ ++ +E     I  + +++L++MY  DG+GLAA Q+G+  R   +D     
Sbjct: 5   LYGDPILRKKAKIVEDFEY-IQQIKEDLLKIMYLEDGVGLAAPQVGISLRFFAMD----- 58

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               P++ +NP+II  S +  + +EGCLS+P    DV+R  ++ +RY D   + Q    +
Sbjct: 59  DGSGPLIIVNPEIIEHSQEKEIGEEGCLSLPGIFEDVERYKWVKLRYQDEYGKVQEKLFE 118

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           G  A  +QHE DHL+GILFIDHL    +  ++ ++SK++++R
Sbjct: 119 GYSARIVQHERDHLDGILFIDHLPTSVKRRLSTELSKIMRMR 160


>gi|307128595|ref|YP_003880625.1| peptide deformylase [Candidatus Sulcia muelleri CARI]
 gi|306483057|gb|ADM89927.1| peptide deformylase [Candidatus Sulcia muelleri CARI]
          Length = 172

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 99/164 (60%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++I+ +PILR+    I++   +I  LI NM + MY   GIGL+A QIG+  RL +I+  
Sbjct: 4   PILIYGNPILRKKCIEIDQSYQNINLLIKNMYDTMYKAKGIGLSAPQIGLSIRLFIIEYN 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +K   VFINPKII       + +EGCLSIP+   ++KR   + + Y D N +    
Sbjct: 64  NFYKKKFKKVFINPKIIKNYGYDLISKEGCLSIPNIIENIKRKNNLIIEYYDENWKKYRQ 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + +GLL+  +QHE DH++G LFIDH+S +K  +I  K+  +  L
Sbjct: 124 HFNGLLSIIIQHEYDHIDGKLFIDHISDMKNILIKNKLKIMFNL 167


>gi|294782531|ref|ZP_06747857.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
 gi|294481172|gb|EFG28947.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
          Length = 174

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 98/159 (61%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + D +L+++++ +E  +IN +    +D+M+E MY TDGIGLAA Q+GV  R+ V +  + 
Sbjct: 8   YGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRVFVCEDGNR 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             RK     INP I   +++   ++EGCLS+P     V+R   + + Y++ N +     A
Sbjct: 68  KIRK----IINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVKLNYLNENGETVEEIA 123

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + LLA  +QHE DHLNGILF++ +S + + +I KK++ +
Sbjct: 124 EDLLAVVVQHENDHLNGILFVEKISPIAKRLIAKKLANM 162


>gi|289677568|ref|ZP_06498458.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 121

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 2/117 (1%)

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           AA Q+ V  R+VV+DL +   R  PMV INP+I   +D+   YQEGCLS+P +  +V R 
Sbjct: 1   AATQVNVHKRVVVMDLSED--RSEPMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRP 58

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             + V+ +D + +   + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K
Sbjct: 59  QKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 115


>gi|57242491|ref|ZP_00370429.1| polypeptide deformylase [Campylobacter upsaliensis RM3195]
 gi|57016776|gb|EAL53559.1| polypeptide deformylase [Campylobacter upsaliensis RM3195]
          Length = 174

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 102/165 (61%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV+K ++ +P+  L   S P+EK + ++  L+D+M E M S+ G+GLAA+Q+ V  R+ +
Sbjct: 1   MVRK-IITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRIFI 59

Query: 61  ---IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
              ID  +   +++ +  INP I   +D+  V  EGCLS+PD+  +V+R+  IT++Y D 
Sbjct: 60  VNIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRNRKITLKYQDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             + + + A+  LA  +QHE DHL+G LFI+ L   KR+  +K+ 
Sbjct: 120 FGKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKEF 164


>gi|328676180|gb|AEB27050.1| Peptide deformylase [Francisella cf. novicida Fx1]
          Length = 172

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 5/161 (3%)

Query: 9   FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  +  + D+
Sbjct: 8   YPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFFI--MYDN 65

Query: 67  AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +NP +              +  +EGCLS P   A V R+  + ++ ++       I 
Sbjct: 66  LEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFGDEIEIE 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+
Sbjct: 126 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 166


>gi|260912122|ref|ZP_05918678.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633728|gb|EEX51862.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 187

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 13/173 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ I+   +LR+V++ I     ++  LI NM E M ++DGIGLAA QIG+  RL+V+DL 
Sbjct: 4   PVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVVDLD 63

Query: 64  -------QDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPDYRADVKRSAFITVRY 114
                  +   +RK    FINP I+           +EGCLS+P     V R   I V+Y
Sbjct: 64  VLAETYPEYKGYRK---AFINPHIVEIDKQSPTESLEEGCLSLPGIHEKVTRHTRIRVQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +D + Q    + +G L   LQHE+DHL+GILF DHLS  ++ +I  K+  L+Q
Sbjct: 121 VDEDLQPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQ 173


>gi|313888509|ref|ZP_07822176.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845538|gb|EFR32932.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 163

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 88/142 (61%), Gaps = 5/142 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID--LQDHAH 68
           DPILR+ S+ +   N  +  LID+M E M    G+GLAA QIG+L R++V+D   +D+  
Sbjct: 11  DPILRKKSKVVTNYNDRLKLLIDDMYETMDLAPGVGLAAPQIGILKRVIVVDNREEDNDE 70

Query: 69  RKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            + PM F  INP+II   D   V  EGCLS+P  +  VKR+  I V+Y D   Q +++ A
Sbjct: 71  GEKPMRFYMINPEIIE-KDGEEVSMEGCLSVPGKQGTVKRAKHIKVKYNDLEGQEKLMEA 129

Query: 127 DGLLATCLQHELDHLNGILFID 148
           +  LA  +QHE DHL+GIL+ D
Sbjct: 130 EDFLARIIQHETDHLDGILYTD 151


>gi|188589463|ref|YP_001920560.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43]
 gi|251778927|ref|ZP_04821847.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|238689669|sp|B2V4B1|DEF_CLOBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188499744|gb|ACD52880.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43]
 gi|243083242|gb|EES49132.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 147

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 90/144 (62%), Gaps = 6/144 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+  R +EKI+  ++ LI +MLE MY  DG+GLAA Q+G+L RL ++D+ D   
Sbjct: 9   YGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFIVDIGD--- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+VFINP+I+  +D   V +EGCLS+P     V R  ++  R ++   +   I A+ 
Sbjct: 66  --GPLVFINPEILD-TDGKQVDEEGCLSLPGKTEPVMRPNYVKARALNEKGEEFEIEAEE 122

Query: 129 LLATCLQHELDHLNGILFIDHLSR 152
           LLA  + HE DHLNG LFID  ++
Sbjct: 123 LLARAILHEYDHLNGTLFIDRTTK 146


>gi|218290476|ref|ZP_03494596.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239497|gb|EED06692.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1]
          Length = 167

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 4/143 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ---DHA 67
           DP+LR+ ++ + +    I  L+D+M E MY  DGIGLAA QIG+L RLVVID+Q   D  
Sbjct: 11  DPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVVIDVQPKEDSF 70

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            ++  +  +NP+I+  S      +E CLS+P     V+R+A++ VR  +   +   I   
Sbjct: 71  QKRAWIELVNPEIVARS-GVQREREACLSLPGLSGVVERAAYVRVRAQNRYGEFFEIEGR 129

Query: 128 GLLATCLQHELDHLNGILFIDHL 150
            LLA CLQHE+DHL+GILF D+L
Sbjct: 130 DLLARCLQHEIDHLDGILFTDYL 152


>gi|182625873|ref|ZP_02953639.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
 gi|177908907|gb|EDT71399.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
          Length = 147

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 88/139 (63%), Gaps = 4/139 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+  R ++ IN  I  L+++M+E M+  +G+GLAA Q+G+L R+ V+D  D A  +
Sbjct: 11  DEILRKKCRVVDDINDRIKVLVEDMIETMHENNGVGLAAPQVGILKRIFVVDAMDGAGSR 70

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              VFINP+I+  S +    +EGCLS+P     VKR+  I ++ +D N    ++ A+  L
Sbjct: 71  ---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFL 126

Query: 131 ATCLQHELDHLNGILFIDH 149
           A  +QHE DHL G+LFIDH
Sbjct: 127 ARAIQHEYDHLEGVLFIDH 145


>gi|291532990|emb|CBL06103.1| peptide deformylase [Megamonas hypermegale ART12/1]
          Length = 168

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 90/138 (65%), Gaps = 6/138 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L++ ++PIE+I+  I  L+D+M E MY  +G+GLAA Q+G   ++VVID+ +     
Sbjct: 27  DLVLKQQAQPIERIDKTIRTLLDDMAETMYKANGVGLAAPQVGQSIQVVVIDVGE----- 81

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP II   +   +  EGCLS+P+   +V+R+A ++V Y++   +   I A GLL
Sbjct: 82  GLLELINPTIIR-KEGTEIDTEGCLSVPEIYGEVERAAKVSVEYLNRRGRRHRITATGLL 140

Query: 131 ATCLQHELDHLNGILFID 148
           A CLQHE+DHL+G LFID
Sbjct: 141 ARCLQHEIDHLHGRLFID 158


>gi|325298805|ref|YP_004258722.1| Peptide deformylase [Bacteroides salanitronis DSM 18170]
 gi|324318358|gb|ADY36249.1| Peptide deformylase [Bacteroides salanitronis DSM 18170]
          Length = 184

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA Q+G+  R+VV++L 
Sbjct: 4   PIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVVNLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D    K+    +INP I+    +     EGCLS+P     VKR   I V Y+D + 
Sbjct: 64  VLAEDFPEYKDFRRAYINPHILETGGELVSMDEGCLSLPGIHESVKRPDKIHVTYLDEDM 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                + +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++
Sbjct: 124 NPHDEWVEGYLARVMQHEFDHLEGTMFIDHLSALRKQMIKGKLNAMLK 171


>gi|254372091|ref|ZP_04987584.1| hypothetical protein FTCG_01232 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569822|gb|EDN35476.1| hypothetical protein FTCG_01232 [Francisella novicida GA99-3549]
          Length = 174

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 5/161 (3%)

Query: 9   FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  +  + D+
Sbjct: 10  YPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFFI--MYDN 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +NP +              +  +EGCLS P   A V R+  + ++ ++       I 
Sbjct: 68  LEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFGDEIEIE 127

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+
Sbjct: 128 KDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 168


>gi|88859726|ref|ZP_01134366.1| peptide deformylase [Pseudoalteromonas tunicata D2]
 gi|88818743|gb|EAR28558.1| peptide deformylase [Pseudoalteromonas tunicata D2]
          Length = 168

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M   P++   DP L   +  +  +   + +LID++L+ +Y+TD GIGLAA QIG    ++
Sbjct: 1   MAVLPILTAGDPFLAVPATAVTDVKL-VESLIDDLLDTLYATDNGIGLAATQIGRKEAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL   A R  P+V INP +++   +    +  CLS+P YRADV R   + V  +D + 
Sbjct: 60  VIDLS--AERNQPLVLINPVVVSGEAEEKGEEG-CLSVPGYRADVVRYTHVVVEALDRSG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Q   I +D  LA  +QHE+DHL G LFID+LS LKR++  KK+ K V+
Sbjct: 117 QAVRIDSDDFLAIVMQHEIDHLKGTLFIDYLSPLKRNIALKKVKKCVK 164


>gi|212691280|ref|ZP_03299408.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855]
 gi|237712291|ref|ZP_04542772.1| peptide deformylase [Bacteroides sp. 9_1_42FAA]
 gi|237726430|ref|ZP_04556911.1| peptide deformylase [Bacteroides sp. D4]
 gi|265751999|ref|ZP_06087792.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA]
 gi|212666512|gb|EEB27084.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855]
 gi|229434956|gb|EEO45033.1| peptide deformylase [Bacteroides dorei 5_1_36/D4]
 gi|229453612|gb|EEO59333.1| peptide deformylase [Bacteroides sp. 9_1_42FAA]
 gi|263236791|gb|EEZ22261.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA]
          Length = 184

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 7/169 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA QIG+  R+V IDL 
Sbjct: 4   PIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTIDL- 62

Query: 65  DHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D    + P        +INP I+    +    +EGCLS+P     VKR   I V Y+D  
Sbjct: 63  DVMSDELPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLDEE 122

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +    + +G LA  +QHE DHL+G +FIDHLS L++ MI  K+  +++
Sbjct: 123 LKEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLK 171


>gi|118602931|ref|YP_904146.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567870|gb|ABL02675.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 185

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 20/164 (12%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PD  LR  ++ +  I+  I  LI +M E +Y+ DGIGLAA Q+    ++VVIDL+
Sbjct: 4   PILNYPDKRLRTKAKHVNVIDETIQTLIKDMFETIYAKDGIGLAATQVDQHLQVVVIDLE 63

Query: 65  -------------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
                                + + +P+ FINP+I    D    + EGCLS+PD++A+V+
Sbjct: 64  PNSQDDYQLFLKNFQRSSHKQSQKHHPLCFINPRIKE-KDGQEKHIEGCLSVPDFQAEVQ 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           R+  I V  ++   +   + A GLLA C+QHELDHL G+LF+D+
Sbjct: 123 RANHIKVEALNEKGEVFTLQATGLLAICIQHELDHLKGVLFVDY 166


>gi|91792258|ref|YP_561909.1| peptide deformylase [Shewanella denitrificans OS217]
 gi|91714260|gb|ABE54186.1| Peptide deformylase [Shewanella denitrificans OS217]
          Length = 167

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 96/149 (64%), Gaps = 5/149 (3%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAH 68
           P+  L+  ++ +  I   + +LID+ML+ +Y T DGIGLAA Q+G    +++ID+ +   
Sbjct: 10  PNEKLKVTAKKVSNIEQ-VQSLIDDMLDTLYHTEDGIGLAATQVGRNEAIIIIDISET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R +P++ INP++I  ++     QEGCLS+P Y ADV+R + + V  +D +    II  D 
Sbjct: 67  RDSPLILINPEVIEGTN-IEKGQEGCLSVPGYYADVERFSRVKVTGLDRHGNEVIIDNDD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDM 157
            LA  LQHE+DHL G+LFID+LS LK+ M
Sbjct: 126 FLAIVLQHEIDHLKGVLFIDYLSPLKQSM 154


>gi|296115525|ref|ZP_06834155.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977920|gb|EFG84668.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 305

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 3/161 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V+FPD  LR V+ P+   +  +  +  ++L+ + +  GIG+ A  IGVL R+VV+DL 
Sbjct: 142 PIVLFPDQRLRMVAEPVVVFDETLRAMTADLLDTVRAAPGIGITAPHIGVLQRVVVLDLP 201

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P  +INP+I+  SD+ + ++EG +S+P     V+R A + VRY D +    + 
Sbjct: 202 GGL---GPQTYINPEIVWRSDETARHEEGSISMPGVTEVVERPARVRVRYRDVDGHEMME 258

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            ADGL A C QHE+D L G+ +   LS L+R  +  +  K+
Sbjct: 259 DADGLRAVCHQHEIDQLEGVFWTQRLSTLRRSRLMSRYEKI 299


>gi|150006541|ref|YP_001301285.1| peptide deformylase [Bacteroides vulgatus ATCC 8482]
 gi|294778840|ref|ZP_06744257.1| peptide deformylase [Bacteroides vulgatus PC510]
 gi|319642942|ref|ZP_07997578.1| peptide deformylase [Bacteroides sp. 3_1_40A]
 gi|158513745|sp|A6L7J9|DEF_BACV8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149934965|gb|ABR41663.1| peptide deformylase [Bacteroides vulgatus ATCC 8482]
 gi|294447293|gb|EFG15876.1| peptide deformylase [Bacteroides vulgatus PC510]
 gi|317385490|gb|EFV66433.1| peptide deformylase [Bacteroides sp. 3_1_40A]
          Length = 184

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 94/168 (55%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA QIG+  R+V IDL 
Sbjct: 4   PIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTIDLD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               D    K+    +INP I+    +    +EGCLS+P     VKR   I V Y+D   
Sbjct: 64  VMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHEAVKRPDRIHVTYLDEEL 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +    + +G LA  +QHE DHL+G +FIDHLS L++ MI  K+  +++
Sbjct: 124 KEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLK 171


>gi|237744608|ref|ZP_04575089.1| polypeptide deformylase [Fusobacterium sp. 7_1]
 gi|256027377|ref|ZP_05441211.1| polypeptide deformylase [Fusobacterium sp. D11]
 gi|260494468|ref|ZP_05814598.1| peptide deformylase [Fusobacterium sp. 3_1_33]
 gi|289765343|ref|ZP_06524721.1| polypeptide deformylase [Fusobacterium sp. D11]
 gi|229431837|gb|EEO42049.1| polypeptide deformylase [Fusobacterium sp. 7_1]
 gi|260197630|gb|EEW95147.1| peptide deformylase [Fusobacterium sp. 3_1_33]
 gi|289716898|gb|EFD80910.1| polypeptide deformylase [Fusobacterium sp. D11]
          Length = 174

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 99/159 (62%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA Q+GV  R+ V D  + 
Sbjct: 8   YGEEVLKQIAKEVEFNEINDEFRKFLDDMVETMYETDGVGLAAPQVGVSKRVFVCDDGNG 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             RK     INP ++  +++   ++EGCLS+P     V+R   + ++Y++ N +     A
Sbjct: 68  VVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENGEEVEEIA 123

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +  LA  +QHE DHL+GILF++ +S + + +I KK++ +
Sbjct: 124 ENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANI 162


>gi|260437318|ref|ZP_05791134.1| peptide deformylase [Butyrivibrio crossotus DSM 2876]
 gi|292810230|gb|EFF69435.1| peptide deformylase [Butyrivibrio crossotus DSM 2876]
          Length = 168

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DPILR+V +P+++I      L+ +ML+ MY  +G+GLAA Q+G+L R+VV
Sbjct: 11  MALRNIRINDDPILRKVCKPVQEITKKTEELVGDMLDTMYEANGVGLAAPQVGILKRIVV 70

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D      P++ INP+I+  S      QEGCLSIP     V R  ++  +  D    
Sbjct: 71  IDIGD-----GPIIMINPEILETSGS-QTGQEGCLSIPGKAGIVTRPNYVKAKAYDLQMN 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  + LLA  + HEL HL+G L+IDH+ 
Sbjct: 125 EYTIEGEELLARAICHELGHLDGDLYIDHVE 155


>gi|313203124|ref|YP_004041781.1| peptide deformylase [Paludibacter propionicigenes WB4]
 gi|312442440|gb|ADQ78796.1| peptide deformylase [Paludibacter propionicigenes WB4]
          Length = 183

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  + + +LR+V+ PI     ++  LIDNM + MY  +G+GLAA Q+G+  RL+VIDL 
Sbjct: 4   PIYTYGNAVLRKVAEPINADYPELNTLIDNMFQTMYHAEGVGLAAPQVGLPIRLLVIDLA 63

Query: 65  -----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                D       +  INP+I+  S++     EGCLSIP     V R+  I + Y+D + 
Sbjct: 64  PFKEDDPELGAFKITMINPEILERSEEEVSGDEGCLSIPGIHETVSRAQSIKITYLDPDF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      +G  A  +QHE DHL G LF DH++ ++R ++  K++ +V+
Sbjct: 124 KEHTDVFEGYKARVVQHEYDHLEGHLFTDHVTPIRRQLLKSKLTNIVK 171


>gi|150007311|ref|YP_001302054.1| peptide deformylase [Parabacteroides distasonis ATCC 8503]
 gi|255014064|ref|ZP_05286190.1| peptide deformylase [Bacteroides sp. 2_1_7]
 gi|256839600|ref|ZP_05545109.1| polypeptide deformylase [Parabacteroides sp. D13]
 gi|262382116|ref|ZP_06075254.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
 gi|298375297|ref|ZP_06985254.1| peptide deformylase [Bacteroides sp. 3_1_19]
 gi|301310689|ref|ZP_07216628.1| peptide deformylase [Bacteroides sp. 20_3]
 gi|158513748|sp|A6L9R8|DEF_PARD8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149935735|gb|ABR42432.1| polypeptide deformylase [Parabacteroides distasonis ATCC 8503]
 gi|256738530|gb|EEU51855.1| polypeptide deformylase [Parabacteroides sp. D13]
 gi|262297293|gb|EEY85223.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
 gi|298267797|gb|EFI09453.1| peptide deformylase [Bacteroides sp. 3_1_19]
 gi|300832263|gb|EFK62894.1| peptide deformylase [Bacteroides sp. 20_3]
          Length = 185

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+ +  + K   D+  L+ NM E MY+ DG+GLAA Q+G+  RLVVID  
Sbjct: 4   PVFLYGQPVLRKEAEDVPKDYPDLKQLVANMFETMYNADGVGLAAPQVGLSIRLVVIDGD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               D    K      INP+ +  S++    +EGCLS+P     V RS  + VRY D N 
Sbjct: 64  VMGDDFPECKGFKRALINPEFLERSEEEIAMEEGCLSLPGIHEKVSRSKTVRVRYWDENW 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      +G  A  +QHE +HL G +FID++S ++R +   K++ +++
Sbjct: 124 EEHEEVVEGFAARIVQHECEHLTGHVFIDNVSAIRRQLNKGKLNSIIK 171


>gi|325284991|ref|YP_004260781.1| peptide deformylase [Cellulophaga lytica DSM 7489]
 gi|324320445|gb|ADY27910.1| Peptide deformylase [Cellulophaga lytica DSM 7489]
          Length = 196

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 12/156 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+  + DP+LR+ ++ I + +  +  L++NM E MY+  G+GLAA Q+G+  R+ ++D  
Sbjct: 4   PITAYGDPVLRKKAKDINQDHPKLKELLENMWETMYNASGVGLAAPQVGLPLRIFLVDTT 63

Query: 64  -----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                      +  A       FIN KII  + +   + EGCLSIPD R DV R   I +
Sbjct: 64  PFSDDEDLSAEEQKALNGFKKAFINAKIIEETGEEWAFNEGCLSIPDIREDVSRKENIKI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            Y+D N +      +GLLA  +QHE DH+ GILF D
Sbjct: 124 TYLDENFKEHTEEYNGLLARVIQHEYDHIEGILFTD 159


>gi|32307482|gb|AAP79146.1| peptide deformylase [Bigelowiella natans]
          Length = 315

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 92/171 (53%), Gaps = 6/171 (3%)

Query: 3   KKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           K PL +  +PDP LR  +  I +    +  L D M +VMY  DG GLAA Q+G+ YRL+V
Sbjct: 119 KGPLNVIKYPDPRLRTENEKITEFGKPLQELADEMFDVMYDDDGCGLAAPQVGINYRLMV 178

Query: 61  IDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + Q    +K+  MV  NP+II+  ++   ++EGCLS P  R  V+R   + +R  D   
Sbjct: 179 FNPQGDRRKKDTEMVLANPEIISSGEEKDWFREGCLSFPGIRGQVERPTKVLIRAQDVKG 238

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +      +G  A   QHE DHL+G LF D   R+    + +  +KLV L D
Sbjct: 239 EDIEFELEGFTARVFQHEYDHLSGTLFHD---RMPDKEVAEIHAKLVTLED 286


>gi|315639061|ref|ZP_07894229.1| peptide deformylase [Campylobacter upsaliensis JV21]
 gi|315480837|gb|EFU71473.1| peptide deformylase [Campylobacter upsaliensis JV21]
          Length = 177

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 102/167 (61%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV+K ++ +P+  L   S P+EK + ++  L+D+M E M S+ G+GLAA+Q+ V  R+ +
Sbjct: 1   MVRK-IITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRVFI 59

Query: 61  ---IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
              ID  +   +++ +  INP I   +D+  V  EGCLS+PD+  +V+R   IT++Y + 
Sbjct: 60  VNIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRHRKITLKYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             + + + A+  LA  +QHE DHL+G LFI+ L   KR+  +K+  K
Sbjct: 120 FGKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKEFKK 166


>gi|256420948|ref|YP_003121601.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
 gi|256035856|gb|ACU59400.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
          Length = 192

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 93/172 (54%), Gaps = 13/172 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P+V +  P+LR++   I      +  L+ NM E MY+++G+GLAA QI    RL V+D  
Sbjct: 4   PIVAYGHPVLRKMCEDITPDYPQLEQLLANMWETMYASNGVGLAAPQINRPIRLFVVDSE 63

Query: 63  -----LQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
                L++   +  P        FIN  I++ + +   Y EGCLSIP  R DV R   +T
Sbjct: 64  QIINSLEEDEKKDFPGDNGIKQAFINAHIVSTAGEEWAYNEGCLSIPKVREDVYRPESVT 123

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +RY+D   Q Q     G+ A  + HE DH++G LFIDHL  LKR MI  K+ 
Sbjct: 124 LRYVDEKFQPQEKTFTGITARVIFHEYDHIDGKLFIDHLKPLKRRMIKGKLE 175


>gi|253583796|ref|ZP_04860994.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725]
 gi|251834368|gb|EES62931.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725]
          Length = 173

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 2/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + DP+LR  +  +E ++ +I  ++ NM+E MY   G+GLAA Q+G+  R++V+D      
Sbjct: 8   YGDPVLREKTVEVETVDDNIREILQNMVETMYDKKGVGLAAPQVGISKRMLVLDWTGEGE 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +  INP I   +++   ++EGCLSIP     V+R A I V Y++   +      +G
Sbjct: 68  ELRKV--INPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIKVDYLNEKGEKITEELEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             A  +QHE DHL  +LF+D +S + + M+TKK+  L
Sbjct: 126 FPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQAL 162


>gi|302792493|ref|XP_002978012.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
 gi|300154033|gb|EFJ20669.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
          Length = 198

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 84/146 (57%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PDP LR  +  I   + ++  L+D ML+VMY TDG+GL+A Q+GV  RL+V + + 
Sbjct: 13  IVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNPEG 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +    VF+NP I+ F  +    +EGCLS    +ADV+R   I V   D N +     
Sbjct: 73  ERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFGTT 132

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
             G  A   QHE DHL G+L+ID ++
Sbjct: 133 FRGWTARIFQHEYDHLEGVLYIDRMT 158


>gi|254881558|ref|ZP_05254268.1| peptide deformylase [Bacteroides sp. 4_3_47FAA]
 gi|254834351|gb|EET14660.1| peptide deformylase [Bacteroides sp. 4_3_47FAA]
          Length = 184

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA QIG+  R+V IDL 
Sbjct: 4   PIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTIDLD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               D    K+    +INP I+    +    +EGCLS+P     VKR   I V Y+D   
Sbjct: 64  VMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLDEEL 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                + +G LA  +QHE DHL+G +FIDHLS L++ MI  K+  +++
Sbjct: 124 NEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLK 171


>gi|323699398|ref|ZP_08111310.1| peptide deformylase [Desulfovibrio sp. ND132]
 gi|323459330|gb|EGB15195.1| peptide deformylase [Desulfovibrio desulfuricans ND132]
          Length = 165

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +PD +L   + PI +I  ++  LI+NM++ MY +DG+GLAA Q+    RL+ +D   
Sbjct: 5   ICTWPDEVLEAKAEPITEITPELDELIENMVQTMYESDGVGLAAPQVNQSIRLICVDQTG 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R +  V INP+I+    +     EGCLS P+    V+R   + V+ ++ + +   + 
Sbjct: 65  PKERGDLRVLINPEIVECDGEVE-SDEGCLSCPELNLKVRRKERVKVKALNRSGKEICVE 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
             GLLA  LQHE+DHL G+   D   RLK+ M  KK
Sbjct: 124 TGGLLAIILQHEIDHLEGVTLADRSGRLKKAMYRKK 159


>gi|302766631|ref|XP_002966736.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
 gi|300166156|gb|EFJ32763.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
          Length = 198

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 84/146 (57%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PDP LR  +  I   + ++  L+D ML+VMY TDG+GL+A Q+GV  RL+V + + 
Sbjct: 13  IVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNPEG 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +    VF+NP I+ F  +    +EGCLS    +ADV+R   I V   D N +     
Sbjct: 73  ERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFGTT 132

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
             G  A   QHE DHL G+L+ID ++
Sbjct: 133 FRGWTARIFQHEYDHLEGVLYIDRMT 158


>gi|220928951|ref|YP_002505860.1| peptide deformylase [Clostridium cellulolyticum H10]
 gi|219999279|gb|ACL75880.1| peptide deformylase [Clostridium cellulolyticum H10]
          Length = 159

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 92/154 (59%), Gaps = 6/154 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR++SRP++ I+  I+ L+++M + MY  DG+GLAA QIG+L R+VVID+ D  +  
Sbjct: 11  DEVLRKISRPVDSIDKKILALLEDMADTMYRADGVGLAAPQIGILKRIVVIDVGDGLYE- 69

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                INP I+  S +     EGCLSIP     VKR   +T+RY D N +   I A    
Sbjct: 70  ----MINPIILEQSGEQD-GMEGCLSIPGVLGKVKRPMKVTLRYTDRNGESITIEAKEFF 124

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A  + HELDHL+GIL+ D   ++  +   ++M K
Sbjct: 125 ARAICHELDHLDGILYKDKAHKMYTEKELEEMQK 158


>gi|260432736|ref|ZP_05786707.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416564|gb|EEX09823.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 164

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 99/166 (59%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  + P+ +I  +I  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTVRPCLPWPDKRLRTKAEPVTEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D    A R   +   NP+I+  S +   + E   ++P   A +KR   +TVR++  N +
Sbjct: 61  VD--GSAERGRAVRLANPEILHSSIELREHDEASPNLPGVSAKIKRPRAVTVRFL--NEK 116

Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +I   D  G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  K
Sbjct: 117 GEIDRRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKK 162


>gi|257466485|ref|ZP_05630796.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917642|ref|ZP_07913882.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691517|gb|EFS28352.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 173

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + DP+LR+V+  +E IN +I  ++ NMLE MY+TDG+GLAA Q+G+  R+ V D+     
Sbjct: 8   YGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMFVCDVGTPEE 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            +   + INP I   +++    +EGCLS+P     V R A I + Y +   +      +G
Sbjct: 68  SQVKKI-INPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEKIEEILEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             A  +QHE DHL   LF+D +S + + MI KK+  L
Sbjct: 127 FPAIVVQHEYDHLEATLFVDRISPMAKRMIAKKLQAL 163


>gi|194336843|ref|YP_002018637.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693370|sp|B4SBG6|DEF_PELPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194309320|gb|ACF44020.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 188

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 3/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+ D ILR  ++P++ ++S I  LI +M E M +  GIGLAA Q+G   RL+V+D+ 
Sbjct: 4   PINIYSDDILRLKAKPLKGVDSAIEELIASMFESMRNASGIGLAAPQVGRSIRLLVLDVS 63

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                  + PMV INP I++      + +EGCLS+P  +  V R A IT++Y D +   +
Sbjct: 64  CVSKCEHEKPMVVINPHILSVRGHNDM-EEGCLSVPGVQGYVVRPAAITLKYRDEHFAER 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                G++A  +QHE+DHL+G LF+D + +  R  I K+++ L  
Sbjct: 123 TGEFSGMVARVIQHEIDHLDGTLFVDRMEKRDRKKIQKELTALAS 167


>gi|295109186|emb|CBL23139.1| peptide deformylase [Ruminococcus obeum A2-162]
          Length = 157

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 6/138 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR++SRP++++   I+ LID+ML+ MY   G+GLAA Q+G+L R+VVID+ +     
Sbjct: 11  DPVLRKISRPVKEVTPKIVTLIDDMLDTMYEAMGVGLAAPQVGILKRIVVIDIGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+I+  S +     EGCLS+P     V R  ++ V+ MD +    I     LL
Sbjct: 66  GPIILINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAMDEDMNEVIYEGTELL 124

Query: 131 ATCLQHELDHLNGILFID 148
           A    HE+DHL+G ++ D
Sbjct: 125 ARAFCHEIDHLDGKMYTD 142


>gi|77464454|ref|YP_353958.1| formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|77388872|gb|ABA80057.1| Formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1]
          Length = 167

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 99/165 (60%), Gaps = 4/165 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+D 
Sbjct: 3   RPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVVDC 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQ 122
            +  +R   +   NP+I+  S  F  ++EG  ++P   A + R   +TVR+++   +  +
Sbjct: 63  SE--NRGKAIRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGEIEE 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + D + AT +QH++DHLNG L+ID LS LKR M+  K  K ++
Sbjct: 121 RDFVD-IWATSVQHQIDHLNGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|255070681|ref|XP_002507422.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299]
 gi|226522697|gb|ACO68680.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299]
          Length = 257

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 5   PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL I  +P   LR  ++ +   +SD+  L   M ++MY T+G+GLAA Q+GV YR++V +
Sbjct: 83  PLAIQKYPHASLRNDNKIVGVFDSDLEKLAQAMFKIMYDTEGVGLAAPQVGVNYRMMVYN 142

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                 R   +V +NPKI+ FS    +++EGCLS P   ADV+R   + V   +   +  
Sbjct: 143 EAGEPGRGKEVVLVNPKIVKFSKTKDLFEEGCLSFPKIYADVERPTSVQVEAQNLRGKKF 202

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +  DG  A   QHE DHL+G+LF D ++   R  +  ++  L++
Sbjct: 203 KMTLDGFEARVFQHEYDHLDGVLFHDRMTDEVRGTVQGELDALIE 247


>gi|258511303|ref|YP_003184737.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478029|gb|ACV58348.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 167

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 4/143 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ---DHA 67
           DP+LR+ ++ + +    I  L+D+M E MY  DGIGLAA QIG+L RLVVID+Q   D  
Sbjct: 11  DPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVVIDVQPKEDSF 70

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            ++  +  +NP+I+  S      +E CLS+P     V+R+A++ VR  +   +   I   
Sbjct: 71  QKRAWIELVNPEILERS-GVQREREACLSLPGLSGVVERAAYVRVRAQNRYGEFFEIEGR 129

Query: 128 GLLATCLQHELDHLNGILFIDHL 150
            LLA CLQHE+DHL+GILF D+L
Sbjct: 130 DLLARCLQHEIDHLDGILFTDYL 152


>gi|281420284|ref|ZP_06251283.1| peptide deformylase [Prevotella copri DSM 18205]
 gi|281405586|gb|EFB36266.1| peptide deformylase [Prevotella copri DSM 18205]
          Length = 185

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 6/169 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ I+  P+LR+V+  I     D+  LI+NM E + S++GIGLAA QIG+  RLVVIDL 
Sbjct: 4   PIYIYGQPVLRKVAEDITPDYPDLKVLINNMYETLDSSNGIGLAAPQIGLPIRLVVIDLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFS-VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              +D    K     FIN  I+   ++ +   +EGCLSIP     V R   I V+YMD +
Sbjct: 64  VLSEDFPEYKGFRHAFINAHILERDEENTDSSEEGCLSIPGINEKVVRPTRIHVKYMDED 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                 + +G LA  +QHE DHL G +F+D +S L+++MI  K+  +++
Sbjct: 124 FNEHDEWIEGYLARVMQHEFDHLEGTMFVDRVSPLRKNMIAGKLKSIIK 172


>gi|156097168|ref|XP_001614617.1| formylmethionine deformylase [Plasmodium vivax SaI-1]
 gi|148803491|gb|EDL44890.1| formylmethionine deformylase, putative [Plasmodium vivax]
          Length = 186

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 95/163 (58%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V++PDP+LR+    +   + ++  L+ +M  VMY + G+GLAA Q+ +  R++V + L 
Sbjct: 12  IVLYPDPVLRKKCDEVVHFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISRRIIVWNALY 71

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   ++N  VFINP I+  S   S   EGCLS PD    V R + +++ Y D +    + 
Sbjct: 72  EKKKKENERVFINPSIVEPSLVRSKLVEGCLSFPDIEGKVDRPSVVSISYYDLDGNKHLK 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ A   QHE DHL+G+LFID  S+ +R  +  K++ L++
Sbjct: 132 ILKGIHARIFQHEYDHLDGVLFIDRFSQSERHKVRAKLNALIR 174


>gi|163738221|ref|ZP_02145637.1| peptide deformylase [Phaeobacter gallaeciensis BS107]
 gi|161388837|gb|EDQ13190.1| peptide deformylase [Phaeobacter gallaeciensis BS107]
          Length = 165

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  +  + +I  + + L  +M++ M +  G+GLAA QIGVL RL V
Sbjct: 1   MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D    + R   +   NP+I+  S     ++E   ++P   A +KR   +TVRYMD    
Sbjct: 61  VD--GSSERGRAVRLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETG- 117

Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              +  D  G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  KL
Sbjct: 118 -ATVERDFVGIEATSVQHQIDHLNGKMYFDKLSKVKRDMLIRKAKKL 163


>gi|303242018|ref|ZP_07328510.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
 gi|302590436|gb|EFL60192.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
          Length = 160

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 90/140 (64%), Gaps = 6/140 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ S+ +EKI+  I+NL+D+M E MY ++G+GLAA Q+G+L R+VVID+ +   + 
Sbjct: 12  DDVLRKKSKVVEKIDEKILNLLDDMAETMYQSNGVGLAAPQVGILKRVVVIDVGEGLIK- 70

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                INP+II+   +     EGCLS+PD   +VKR+  + V+ +D       +   GLL
Sbjct: 71  ----LINPQIISMEGEQQDI-EGCLSVPDIIGEVKRANKVKVKAIDEKGNSIELDGTGLL 125

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A    HE+DHL+GILFID +
Sbjct: 126 ARAFCHEIDHLDGILFIDKI 145


>gi|257452629|ref|ZP_05617928.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
 gi|317059168|ref|ZP_07923653.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
 gi|313684844|gb|EFS21679.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
          Length = 173

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + DP+LR+V+  +E IN +I  ++ NMLE MY+TDG+GLAA Q+G+  R+ V D+     
Sbjct: 8   YGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMFVCDVGTPEE 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            +   + INP I   +++    +EGCLS+P     V R A I + Y +   +      +G
Sbjct: 68  SQVKKI-INPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEKIEEILEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             A  +QHE DHL   LF+D +S + + MI KK+  L
Sbjct: 127 FPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQAL 163


>gi|195952867|ref|YP_002121157.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932479|gb|ACG57179.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
          Length = 164

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 99/155 (63%), Gaps = 10/155 (6%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
           ++++P+P+L+  S+ + KI+ +I+  I+N+ E MYS D   G+A+ Q+GVL  +VV+D  
Sbjct: 5   ILVYPNPLLKEKSKDVNKIDDNIIKHIENLKETMYSKDFCTGIASSQVGVLQNIVVMDAS 64

Query: 65  DHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
               RK P      +  INP II  S+D  +++EGCLS+P+Y A+++R   ++V+ +D  
Sbjct: 65  --RFRKPPKNHHGLITLINPVIIK-SEDSIIFREGCLSVPEYTANIQRYKHVSVKALDEK 121

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
               I+  +G  A   QHELDHLNGILF+D L+ L
Sbjct: 122 ENEIILDLEGPEAVLFQHELDHLNGILFLDRLTSL 156


>gi|299143971|ref|ZP_07037051.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518456|gb|EFI42195.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 158

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 87/138 (63%), Gaps = 5/138 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR++SR + K +  +  LI++M E M   +G+GLAA Q+GVL R++ +D +   HR 
Sbjct: 11  DPVLRKISREVVKFDDRLKTLIEDMYETMDKAEGVGLAAPQVGVLRRVITVDDRTE-HR- 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                INP+II F     +  EGCLS+P+ +  VKR   I V+Y+D N + + I A   L
Sbjct: 69  --FALINPEII-FESGTQLGYEGCLSLPNKQGKVKRFNEIKVKYLDENGEKKEIEAKEYL 125

Query: 131 ATCLQHELDHLNGILFID 148
           A  LQHE+DHLNGIL+ D
Sbjct: 126 ARILQHEIDHLNGILYSD 143


>gi|226226031|ref|YP_002760137.1| peptide deformylase [Gemmatimonas aurantiaca T-27]
 gi|226089222|dbj|BAH37667.1| peptide deformylase [Gemmatimonas aurantiaca T-27]
          Length = 196

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 87/148 (58%), Gaps = 6/148 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +   P+LR+ ++ +E +  ++  L+DNM + M +  G+GLAA Q+G L RL V+D  D  
Sbjct: 8   VLGSPVLRQETQRVESVTPELRRLVDNMFDTMEAAKGVGLAAPQVGRLERLAVVDADDVR 67

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                +V INP+II   +     +EGCLSIP+  ADV R A + VR  D +     + A 
Sbjct: 68  -----LVVINPEII-LREGLERGEEGCLSIPEVYADVDRPARVIVRAQDIDLNWYEVDAA 121

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKR 155
            LL  CLQHE+DHL G LF D LS LK+
Sbjct: 122 NLLGRCLQHEIDHLFGKLFTDRLSLLKK 149


>gi|325270161|ref|ZP_08136768.1| peptide deformylase [Prevotella multiformis DSM 16608]
 gi|324987462|gb|EGC19438.1| peptide deformylase [Prevotella multiformis DSM 16608]
          Length = 186

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 16/174 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVIDL 
Sbjct: 4   PIYTYGQPVLRKVAEDIPLDYPDLPELIQNMFETNTASDGVGLAAPQIGKSVRVVVIDLD 63

Query: 64  ---------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113
                    +D  H      FIN  I+   D +    +EGCLS+P     V R+  I V+
Sbjct: 64  VLSDTFPEYKDFRH-----AFINGHILELDDSETETMEEGCLSLPGIHESVTRAKRIHVK 118

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Y+D + +    + DG LA  +QHE DHL G +F D LS  +R MI+ K+  L+Q
Sbjct: 119 YLDEHLKEHDEWVDGYLARVIQHEFDHLEGRVFTDRLSAFRRQMISGKLKALLQ 172


>gi|291280498|ref|YP_003497333.1| polypeptide deformylase [Deferribacter desulfuricans SSM1]
 gi|290755200|dbj|BAI81577.1| polypeptide deformylase [Deferribacter desulfuricans SSM1]
          Length = 167

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 101/165 (61%), Gaps = 5/165 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVID 62
           + ++ +P+P+L+ +S+ + ++  DI N+I ++++ M +T    G+AA QIG L R++ ID
Sbjct: 4   REVLTYPNPLLKEISKEVTELTDDIKNIIKDLVDTMDATSHSTGIAAPQIGELVRIIAID 63

Query: 63  LQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +   KN     V INP+I+ + +     +EGC+S+PDY  +V R+  + V+++D N 
Sbjct: 64  PGKNKKCKNHHGKRVLINPEIVKW-EGLIQSREGCMSVPDYTGNVNRAEKVVVQFLDENL 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q     A+G  A  LQHE+DHL+GILFID +   + D+  +K  K
Sbjct: 123 QPGAFEAEGFEAILLQHEIDHLDGILFIDRIISKRTDLFRRKKYK 167


>gi|260655752|ref|ZP_05861221.1| peptide deformylase [Jonquetella anthropi E3_33 E1]
 gi|260629368|gb|EEX47562.1| peptide deformylase [Jonquetella anthropi E3_33 E1]
          Length = 162

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 8/158 (5%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQ-D 65
           ++PDP+LR+ + P+   +  +  L+++M  +M+  DG+GLAA QIG+  ++ V+ D + D
Sbjct: 9   VYPDPVLRQPTEPVTVFDEALRRLLEDMAVIMHEADGVGLAAPQIGIAKKIAVVYDAETD 68

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           H +       INP++I  S      +EGCLS P     VKR   +TVR  D +   Q   
Sbjct: 69  HLYH-----LINPEVIA-SSGGQTGEEGCLSFPGIFGQVKRPLKVTVRCQDGDGNLQEYT 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           A G +A    HE+DHLNG L ID+ S LKR+++ KKM 
Sbjct: 123 AQGFIARAFTHEIDHLNGRLLIDNFSPLKRNLVLKKMG 160


>gi|330837393|ref|YP_004412034.1| peptide deformylase [Spirochaeta coccoides DSM 17374]
 gi|329749296|gb|AEC02652.1| peptide deformylase [Spirochaeta coccoides DSM 17374]
          Length = 167

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 88/146 (60%), Gaps = 4/146 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V   + +LRR + P++  ++ +  L+D+M + +    G+GLAA Q+GV  RL ++D++ 
Sbjct: 4   IVTLGEDVLRRRAEPVKVFDAALRLLVDDMFDSLAQERGVGLAAPQVGVSQRLFIVDIEG 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                   VFINP+II  S + + Y+EGCLSIP    DV R   IT++  D   +   + 
Sbjct: 64  G----EKGVFINPEIIETSMEQTPYEEGCLSIPGIWHDVVRPQRITMQAQDVTGKFFTVK 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
           ADG+ A  LQHE DHLNG LFID L+
Sbjct: 120 ADGMFARVLQHEYDHLNGTLFIDRLN 145


>gi|156743414|ref|YP_001433543.1| peptide deformylase [Roseiflexus castenholzii DSM 13941]
 gi|254767599|sp|A7NPM9|DEF_ROSCS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|156234742|gb|ABU59525.1| peptide deformylase [Roseiflexus castenholzii DSM 13941]
          Length = 185

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 16/161 (9%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-- 70
           IL     P+   N  +  L+ +M E M++ +G+GLAA QIGV  RL VI +      +  
Sbjct: 17  ILTTRCHPVRMPNPSLKQLVADMFETMHAANGVGLAAPQIGVTQRLAVIAIPPMMEERPD 76

Query: 71  ---------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                       V INP+I+  SD   V  EGCLS+P +  +V R+A++TV Y D N + 
Sbjct: 77  GTKVEVAPEQTFVLINPEIVKASDQEDVGLEGCLSLPGWYGEVPRAAWVTVEYTDLNGRR 136

Query: 122 Q-IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           Q I  A GLLA  LQHE+DHL+G+LF + +    RD+ T K
Sbjct: 137 QRIRRATGLLARALQHEIDHLDGVLFTERI----RDLSTLK 173


>gi|169333675|ref|ZP_02860868.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259669|gb|EDS73635.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM
           17244]
          Length = 174

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 6/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D ILR+ S+ ++KI    + LID+M E MY   G+GLAAVQ+GVL R+V 
Sbjct: 1   MALRTIRITGDEILRKTSKEVKKITPRTLELIDDMFETMYDAQGVGLAAVQVGVLRRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D      P+V INP+II  S++  +  EGCLS+P  +    R   + V+ +D +  
Sbjct: 61  IDVGD-----GPVVLINPEIIYKSEEEYLEAEGCLSVPGEQGYTYRPEEVRVKALDRDGN 115

Query: 121 HQIIYA-DGLLATCLQHELDHLNGILFID 148
            +II + D   +  + HEL+HL+GIL+ D
Sbjct: 116 ERIIESKDRFFSKAICHELEHLDGILYTD 144


>gi|256370663|ref|YP_003108488.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009455|gb|ACU52815.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM]
          Length = 180

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 96/163 (58%), Gaps = 2/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P++I+  P+LR+    IEK  NS+ +N LI NM + M    GIGLAA QIG+  RL +I+
Sbjct: 4   PILIYGHPLLRKRCLEIEKFSNSNQINSLIQNMYDTMGQAQGIGLAAPQIGISLRLFIIE 63

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             +   +K   VFINPKI+     + + +EGCLS+P+   ++ R   + + Y D N +  
Sbjct: 64  YNNFYKKKFKQVFINPKILKIYGSYLITKEGCLSLPNIIENIIRKNHLIIEYYDENWKKY 123

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             +  GLL+  +QHE DH+ G  F+DH+S  K+  +  ++ K+
Sbjct: 124 KQHFHGLLSIIIQHEYDHIEGKFFLDHISDQKKLFLHNQLKKI 166


>gi|168182587|ref|ZP_02617251.1| peptide deformylase [Clostridium botulinum Bf]
 gi|237795949|ref|YP_002863501.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|182674255|gb|EDT86216.1| peptide deformylase [Clostridium botulinum Bf]
 gi|229263426|gb|ACQ54459.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 147

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 93/143 (65%), Gaps = 8/143 (5%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+ SR IEKI+  I+ L+++M+E MYS +G+GLAA Q+G+L R VVID+ +   
Sbjct: 9   YGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVVIDVGEGLI 68

Query: 69  RKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           +      INP+II T  +   V  EGCLS+P  + +V+R   + V+ ++   +  ++  +
Sbjct: 69  K-----LINPEIIETEGNQKDV--EGCLSVPGEQGEVERPYKVKVKALNEKGEEIVLEGE 121

Query: 128 GLLATCLQHELDHLNGILFIDHL 150
           GLLA    HE+DHL+G+LF+D +
Sbjct: 122 GLLARAFCHEIDHLDGVLFVDKV 144


>gi|262038785|ref|ZP_06012139.1| peptide deformylase [Leptotrichia goodfellowii F0264]
 gi|261747196|gb|EEY34681.1| peptide deformylase [Leptotrichia goodfellowii F0264]
          Length = 170

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 94/158 (59%), Gaps = 5/158 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++  P LR  S  ++ ++ ++  ++D M+E M   +G+GLAA Q+ +  R  V+++++
Sbjct: 3   IVLYEHPTLRTKSTEVDIVDDELRKILDEMVETMRKANGVGLAANQVDIPKRFFVLEVEN 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +      +NP+II  SD+   Y+EGCLSIP     V R + I V+Y++   +  I  
Sbjct: 63  KVKK-----IVNPEIIESSDEIIEYEEGCLSIPGIYKKVNRPSEIKVKYLNEKGEEVIEE 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              + A   QHELDHL+G+LFID +S L + +I+KK+ 
Sbjct: 118 LKEMWARAFQHELDHLDGVLFIDRISVLNKRLISKKLE 155


>gi|91204615|emb|CAJ70843.1| strongly similar to peptide deformylase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 170

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 95/162 (58%), Gaps = 3/162 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P P+LR+ ++P+ +IN+D+    + M+E+M    GIGLAA Q+G   RL VID+  
Sbjct: 3   IVTYPAPVLRQKAKPLTEINADVYKKAEKMVELMRRVHGIGLAAPQVGWSVRLFVIDVVG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +    N  VFINP I+  + + S  +EGCLS P     V R+  I V   + N Q   + 
Sbjct: 63  NNVDDN--VFINPSIMEEAGETS-NEEGCLSFPGIMGKVIRTHKIKVCAYNLNGQKIEVV 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + LLA   QHELDHLNG LFID +S   R   ++++ +L Q
Sbjct: 120 LEDLLARAWQHELDHLNGCLFIDRMSPASRLAASQQLKELEQ 161


>gi|170748510|ref|YP_001754770.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
 gi|170655032|gb|ACB24087.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
          Length = 165

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV+FPDP L R + P++     +  L D++ + + +   IGL A  IGV  RLVV
Sbjct: 1   MPARPLVLFPDPRLTRPAEPVDAFGPSLQALADDVRDTLMAESAIGLTAPHIGVPARLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + +  +   +   +++NP +   S + + + EG +S+P  R  + R A I + Y D +  
Sbjct: 61  VRMSPNESAR---IYVNPVVSWASPETATHDEGSVSMPGVRERIARPARIRLSYRDLDGS 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +    +G  A  LQHE+D L+G+ +I  LSRLKR+ + K+  K
Sbjct: 118 AREAETEGFPAAVLQHEIDQLDGVFWIARLSRLKRERLLKRFEK 161


>gi|332298812|ref|YP_004440734.1| Peptide deformylase [Treponema brennaborense DSM 12168]
 gi|332181915|gb|AEE17603.1| Peptide deformylase [Treponema brennaborense DSM 12168]
          Length = 187

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 4/138 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           + +LRR S P+ ++  +I  L  +M ++M    G+GLAA Q+GVL RL VI   D   R 
Sbjct: 8   EQLLRRKSEPVNEVTDEIRRLTQDMFQLMDEAQGVGLAAPQVGVLKRLFVITADDGVRR- 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              VFINP+II  S +   Y+EGCLSIP     + R A +TV+ ++ + +   + ADG L
Sbjct: 67  ---VFINPQIIATSSETCDYEEGCLSIPQIYEHITRPAKVTVQAINEHGKPFTLEADGFL 123

Query: 131 ATCLQHELDHLNGILFID 148
           A  +QHE DHL+GIL+ID
Sbjct: 124 ARIIQHENDHLDGILYID 141


>gi|153809825|ref|ZP_01962493.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174]
 gi|149834003|gb|EDM89083.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174]
          Length = 156

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 85/138 (61%), Gaps = 6/138 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR++S+P++++   I+ LID+ML+ MY   G+GLAA Q+G+L R+VVID+ +     
Sbjct: 11  DPVLRKISKPVKEVTPKIITLIDDMLDTMYEAMGVGLAAPQVGILKRIVVIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I+  S +     EGCLS+P     V R  ++ V+ MD      I     LL
Sbjct: 66  GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAMDEEMNEVIYEGTELL 124

Query: 131 ATCLQHELDHLNGILFID 148
           A    HE+DHL+G ++ D
Sbjct: 125 ARAFCHEIDHLDGKMYTD 142


>gi|306845817|ref|ZP_07478385.1| peptide deformylase [Brucella sp. BO1]
 gi|306273709|gb|EFM55547.1| peptide deformylase [Brucella sp. BO1]
          Length = 164

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 101/165 (61%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   + D+  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEDLRQLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRTA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162


>gi|302877267|ref|YP_003845831.1| peptide deformylase [Gallionella capsiferriformans ES-2]
 gi|302580056|gb|ADL54067.1| peptide deformylase [Gallionella capsiferriformans ES-2]
          Length = 167

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L  +++ + ++N     L+ +M E MY+  G+GLAA Q+ V  +++V+D+ +   
Sbjct: 9   YPDERLHTIAKKVVQVNDVTRKLVQDMAETMYAAPGVGLAATQVNVHEQIIVVDVSET-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +VFINP+I+  S +    +EGCLS+P    +V+R+  I+VR ++   +   + A+G
Sbjct: 67  HDELLVFINPEILHRSGEQE-GEEGCLSVPGIYENVRRADKISVRALNQQGESFTLDAEG 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            LA C+QHE+DHL+G +F+++LS+LK+  +  K+ K
Sbjct: 126 FLAVCIQHEVDHLHGRVFVEYLSQLKQSRLRAKLKK 161


>gi|310659160|ref|YP_003936881.1| defa [Clostridium sticklandii DSM 519]
 gi|308825938|emb|CBH21976.1| DefA [Clostridium sticklandii]
          Length = 152

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 88/141 (62%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ SR ++KIN  I+ L+++M++ MY  DG+GLAA Q+GVL R+VVID+ D     
Sbjct: 11  DEVLRKKSRAVDKINDKILELVEDMIDTMYEADGVGLAAPQVGVLKRVVVIDVGD----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I+  S +     EGCLS+P     V R  ++  +  D +    ++ A+ L 
Sbjct: 66  GPIVMINPEILESSGE-QTDDEGCLSLPGKFGCVTRPYYVKAKAYDTDMNEFVVEAEELF 124

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  + HE+DHL+GILF D + 
Sbjct: 125 ARAICHEIDHLDGILFKDKVE 145


>gi|221054422|ref|XP_002258350.1| formylmethionine deformylase [Plasmodium knowlesi strain H]
 gi|193808419|emb|CAQ39122.1| formylmethionine deformylase, putative [Plasmodium knowlesi strain
           H]
          Length = 242

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V++PDP+LR+    +   + ++  L+ +M  VMY + G+GLAA Q+ +  R++V + L 
Sbjct: 68  IVLYPDPVLRKKCNEVVNFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISMRIIVWNALY 127

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   ++N  VFINP I+  S   S   EGCLS PD    V R   +++ Y D +    + 
Sbjct: 128 EKKKKENERVFINPSIVEPSLIRSKLVEGCLSFPDIEGKVDRPRVVSISYYDLDGNKHLK 187

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ A   QHE DHL+GILFID  S+ ++  +  K++++++
Sbjct: 188 ILKGIHARIFQHEYDHLDGILFIDRFSQSEKHKVRAKLNEMIR 230


>gi|11320966|gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]
          Length = 273

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 89/160 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 83  IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              L A   QHE DHL G+LF D ++    D I +++  L
Sbjct: 203 LSSLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 242


>gi|160889625|ref|ZP_02070628.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492]
 gi|270293967|ref|ZP_06200169.1| polypeptide deformylase [Bacteroides sp. D20]
 gi|317479180|ref|ZP_07938317.1| polypeptide deformylase [Bacteroides sp. 4_1_36]
 gi|156860617|gb|EDO54048.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492]
 gi|270275434|gb|EFA21294.1| polypeptide deformylase [Bacteroides sp. D20]
 gi|316904668|gb|EFV26485.1| polypeptide deformylase [Bacteroides sp. 4_1_36]
          Length = 185

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 97/168 (57%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+V+  I     ++  LI+NM E M + +G+GLAA QIG+  R+V I+L 
Sbjct: 4   PIYVYGQPVLRKVAEDIAPDYPNLKELIENMFETMDNAEGVGLAAPQIGLPIRVVTINLD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               D    K+    +IN  I+  S +     EGCLS+P     VKR   I V+Y+D N 
Sbjct: 64  VLSDDLPEYKDFRKAYINAHILEVSGEEVSMDEGCLSLPGIHESVKRGNKIRVQYLDENL 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++
Sbjct: 124 EPHDEIIEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLK 171


>gi|150390546|ref|YP_001320595.1| peptide deformylase [Alkaliphilus metalliredigens QYMF]
 gi|167012061|sp|A6TRW8|DEF_ALKMQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149950408|gb|ABR48936.1| peptide deformylase [Alkaliphilus metalliredigens QYMF]
          Length = 147

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 89/140 (63%), Gaps = 6/140 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR+ SR ++KI+S I  L+D+M+E MY  DG+GLAA Q+G+L +++VID+ +     
Sbjct: 11  DPVLRKKSRVVDKIDSRIHTLLDDMIETMYEADGVGLAAPQVGILKQVIVIDVGEGV--- 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+II  +       EGCLS+P +  +V+R A + VR ++   +   I    LL
Sbjct: 68  --IELINPEIIKETGS-QCDVEGCLSLPGHSGEVERPAIVKVRGLNRQGKMVEIQGTELL 124

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A  L HE+DHLNGILF D +
Sbjct: 125 ARALCHEIDHLNGILFTDKI 144


>gi|288928223|ref|ZP_06422070.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331057|gb|EFC69641.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 187

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 13/173 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ I+   +LR+V++ I     ++  LI NM E M ++DGIGLAA QIG+  RL+V+DL 
Sbjct: 4   PVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVVDLD 63

Query: 64  -------QDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPDYRADVKRSAFITVRY 114
                  +   +RK    FINP I+   +       +EGCLS+P     V R   I ++Y
Sbjct: 64  VLAETYPEYKGYRK---AFINPHIVEIDEQSPTESLEEGCLSLPGIHEKVTRHTRIRMQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +D + +    + +G L   LQHE+DHL+GILF DHLS  ++ +I  K+  L+Q
Sbjct: 121 VDEDLKPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQ 173


>gi|160880624|ref|YP_001559592.1| peptide deformylase [Clostridium phytofermentans ISDg]
 gi|189083068|sp|A9KM99|DEF_CLOPH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|160429290|gb|ABX42853.1| peptide deformylase [Clostridium phytofermentans ISDg]
          Length = 163

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ + I  D IL + S+ IE++   I  LID+ML+ MY   G+GLAA Q+GVL RLVV
Sbjct: 1   MAKRNIRIMGDSILNKTSKVIEEVTPKIDTLIDDMLDTMYDAGGVGLAAPQVGVLKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+    +   P++ INP+II+ +D      EGCLS+P     V R  ++ V+  D + +
Sbjct: 61  IDVSLEGNE--PIILINPEIIS-TDGEQTGDEGCLSLPGKAGIVTRPNYVKVKAYDRHMK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA    HE+DHL+GIL+++ ++
Sbjct: 118 PFEVEGEGLLARAFCHEIDHLDGILYVEKVN 148


>gi|115379822|ref|ZP_01466890.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|310817741|ref|YP_003950099.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|115363181|gb|EAU62348.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|309390813|gb|ADO68272.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 168

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 91/160 (56%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +VI+P  +L   ++P+      +  L+  M E M    GIG+AA Q+GV  R+ ++  +D
Sbjct: 5   IVIWPHKVLTSATQPVMDFGPALEKLLAEMAESMAEAKGIGIAANQVGVSLRVALVGRED 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                     +NP+++  S   ++ +EGCLS+P+    V R   + VRY D   Q     
Sbjct: 65  GTF----FEIVNPQLLERSGKVTL-EEGCLSVPEEWEKVPRFEKVKVRYQDKAGQWHETE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A+G LA   QHE+DHL+G +F+DHLS LKR +I ++M+KL
Sbjct: 120 AEGRLAHVFQHEIDHLDGHVFVDHLSNLKRTLIRERMNKL 159


>gi|126463294|ref|YP_001044408.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104958|gb|ABN77636.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 167

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+D 
Sbjct: 3   RPFVMYPDKRLKTVAAPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVVDC 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +   R   +   NP+I+  S  F  ++EG  ++P   A V R   +TVR+++   + + 
Sbjct: 63  SE--SRGKAIRLANPEILHASGQFREHEEGSPNLPGASAVVSRPRAVTVRFLNEAGETEE 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                + AT +QH++DHL+G L+ID LS LKR M+  K  K ++
Sbjct: 121 RDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|254486314|ref|ZP_05099519.1| peptide deformylase [Roseobacter sp. GAI101]
 gi|214043183|gb|EEB83821.1| peptide deformylase [Roseobacter sp. GAI101]
          Length = 159

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 89/152 (58%), Gaps = 2/152 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +VI+PD  L +V +P+E I   I  LI +M + MY+  G GLAA Q+G   R+ V D   
Sbjct: 6   IVIWPDARLTQVCQPVEGITPGITQLIADMFDTMYAAPGRGLAAPQVGRSERIFVFDAGW 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  +NP+II  S+     +EGCLSIP+   D++R+A +T+R+ D    H+  +
Sbjct: 66  KDGAPTPVACVNPEIIDLSEGRLTGEEGCLSIPNTPMDIERAAQVTLRWTDPEGTHERTF 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR-LKRD 156
             G  A  +QHE DHL+GI+  D + + +K+D
Sbjct: 126 T-GAEAVIVQHEYDHLDGIVIYDRVEKDVKKD 156


>gi|295111635|emb|CBL28385.1| peptide deformylase [Synergistetes bacterium SGP1]
          Length = 182

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 6/156 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP+L++V+ P+   + ++ + +  M  VM  +DG+GLAA Q+GVL ++ V+D ++ A+
Sbjct: 29  YPDPVLKKVAEPVTVFDDELADFVGKMRTVMRVSDGVGLAAPQVGVLRQIAVVDYKEEAY 88

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                  INP+++    +    +  CLS P   A V+R  ++ V   D   +  +  A G
Sbjct: 89  D-----LINPRVLEQGGEQEGEEG-CLSFPGIYAMVRRPEWVRVEAQDVRGEVHVHEASG 142

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            LA    HE+DHLNG LFID+LS LKR  I +KM K
Sbjct: 143 FLARAFLHEMDHLNGKLFIDYLSPLKRGAIRRKMMK 178


>gi|86151304|ref|ZP_01069519.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315123790|ref|YP_004065794.1| peptide deformylase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841651|gb|EAQ58898.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315017512|gb|ADT65605.1| peptide deformylase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 175

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV+K ++ +P+P L   S+ + K ++++  L+D+M E M +++G+GLAA+Q+ +  R+++
Sbjct: 1   MVRK-IITYPNPRLFLNSKIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLL 59

Query: 61  IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++    D   +++ +  INP+II   ++     EGCLS+PD+  +VKR   I ++Y D 
Sbjct: 60  VNIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             + + + A G LA  +QHE DHLNG LFI+ +S  KR
Sbjct: 120 FGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157


>gi|288817601|ref|YP_003431948.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|288787000|dbj|BAI68747.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|308751198|gb|ADO44681.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
          Length = 169

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 98/165 (59%), Gaps = 6/165 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ FP P+L+  ++ ++ I+ D+ +++ +M E MY  +G+GLAA QIG+   ++VID 
Sbjct: 3   REIIKFPHPVLKMPTQKVDVIDKDVQSIVGDMFETMYHAEGVGLAANQIGISLSIMVIDT 62

Query: 64  QDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                  +P+   V INP+++    +   Y+EGCLS P    +V R + + V+ +D N +
Sbjct: 63  S--KKEDSPLLKAVMINPELLEAEGEVK-YKEGCLSFPGLSVEVSRYSKVKVKALDINGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            ++   +G  A   QHE+DHL GI FID ++ +KR +   K +KL
Sbjct: 120 EKLYLLEGFPAIVFQHEMDHLMGITFIDRVNGIKRRLALDKYAKL 164


>gi|283778512|ref|YP_003369267.1| peptide deformylase [Pirellula staleyi DSM 6068]
 gi|283436965|gb|ADB15407.1| peptide deformylase [Pirellula staleyi DSM 6068]
          Length = 222

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P P LR+V++PI+++++++  ++  M ++MY   GIGLAA Q+ +  RL VI+L  
Sbjct: 33  IITYPHPTLRKVAKPIKRVDAELRAMVAQMFDLMYEAKGIGLAANQVDLPLRLFVINLTA 92

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +VFINP +++     +  +EGCLS+P     V R   + V   +   Q     
Sbjct: 93  EKGKGEELVFINP-VLSHPKGSAEAEEGCLSLPGVYGQVVRPKTVQVNAYNLQGQEISAE 151

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             GLLA C+QHE DHL+G++F D +S   R
Sbjct: 152 VGGLLARCIQHENDHLDGVMFPDRMSESSR 181


>gi|187935113|ref|YP_001885413.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
 gi|187723266|gb|ACD24487.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
          Length = 147

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 90/144 (62%), Gaps = 6/144 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+  R +EKI+  ++ LI +MLE MY  DG+GLAA Q+G+L RL ++D+ +   
Sbjct: 9   YGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFIVDIGE--- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+VFINP+I+  +D   V +EGCLS+P     V R  ++  R ++   +   I A+ 
Sbjct: 66  --GPLVFINPEILD-TDGKQVDEEGCLSLPGKTEPVMRPNYVKARALNEKWEEFEIEAEE 122

Query: 129 LLATCLQHELDHLNGILFIDHLSR 152
           LLA  + HE DHLNG LFID  ++
Sbjct: 123 LLARAILHEYDHLNGTLFIDRTTK 146


>gi|332975391|gb|EGK12285.1| peptide deformylase [Desmospora sp. 8437]
          Length = 173

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 95/151 (62%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M ++ +++F DPILR+ +RP+++I   I  L+D++ + +Y+  G   LAA Q+G+L+R++
Sbjct: 1   MAERNILLFGDPILRKRARPVDQITPKIEKLLDDLADTLYAKPGRAALAAPQVGMLWRVI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID  +       +  INP+I   S    V  E CLS P Y   VKR+ ++ V+ ++ + 
Sbjct: 61  VIDGAE-----GLIELINPEI-EESHGEQVGPEACLSYPGYTGIVKRAKYVKVKTLNRHG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +   +  +  LA C+QHE+DHLNG+LFIDH+
Sbjct: 115 ETWFLEGENHLARCIQHEIDHLNGVLFIDHI 145


>gi|150016029|ref|YP_001308283.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
 gi|149902494|gb|ABR33327.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
          Length = 152

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 9/153 (5%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+  R ++KI+  ++ LI++M E MY  DG+GLAA Q+G+L RL V+D+ D   
Sbjct: 9   YGDDVLRKKCREVDKIDDRLLTLIEDMKETMYDADGVGLAAPQVGILKRLFVVDIGD--- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+VFINP+II  S    + +EGCLS+P    +V R  ++  R ++   +   I A+ 
Sbjct: 66  --GPLVFINPEIIETSGS-QIDEEGCLSLPGETEEVMRPNYVRARALNEKGEEFEIEAEE 122

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           LLA  + HE DHLNG LFID   R+K    +KK
Sbjct: 123 LLARAILHEYDHLNGTLFID---RVKGRGASKK 152


>gi|288801322|ref|ZP_06406776.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331705|gb|EFC70189.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 187

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 96/171 (56%), Gaps = 13/171 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V++ I     ++  LI NM E M + DGIGLAA QIG   RL VIDL 
Sbjct: 4   PIYVYGQPVLRKVAQDITPDYPELKELIANMFETMDNADGIGLAAPQIGRSIRLSVIDLD 63

Query: 64  -------QDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPDYRADVKRSAFITVRY 114
                  +    RK    FINP I+   ++  +   +EGCLSIP    +V R   I V++
Sbjct: 64  VLSEYYPEYKGFRK---AFINPHILEVDEESEMLTSEEGCLSIPGIHENVDRRTRIHVKW 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           MD        + +G LA  +QHE DHL+G+LF D +S L++ ++  K++ +
Sbjct: 121 MDEEFTEHDEWIEGYLARVMQHEFDHLDGVLFTDRISPLRKQLVKNKLTAM 171


>gi|327200558|pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b)
 gi|327200559|pdb|3M6O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b)
 gi|327200560|pdb|3M6P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) In Complex With Actinonin
 gi|327200561|pdb|3M6P|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) In Complex With Actinonin
          Length = 193

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 89/160 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 3   IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 63  EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              L A   QHE DHL G+LF D ++    D I +++  L
Sbjct: 123 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 162


>gi|224539752|ref|ZP_03680291.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518630|gb|EEF87735.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 184

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I      +  LI NM E M   +G+GLAA QIG+  R+VV+DL 
Sbjct: 4   PIYVYGQPVLRKVAEDITPDYPGLKELIANMFETMDHAEGVGLAAPQIGLPIRVVVVDLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D+   KN    +INP I+  S +    +EGCLS+P     VKR   I V YMD N 
Sbjct: 64  VLSEDYPEYKNFRKAYINPHILEVSGEEISMEEGCLSLPGIHESVKRGNRIHVTYMDENM 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++
Sbjct: 124 VEHDEVVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLK 171


>gi|282889627|ref|ZP_06298167.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500454|gb|EFB42733.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 178

 Score =  114 bits (284), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 8/168 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           PL  + DPILR+    +E+I+S +  L+++M+E + +  GIGLAA Q+     L +  + 
Sbjct: 4   PLAFYGDPILRKKCARVEQIDSQLKQLVNDMVETLEAHRGIGLAAPQVHHELNLFITKVP 63

Query: 64  ----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                      N  VF+NPKI+ +S++ + Y EGCLSIP+  A V+R   ITV+Y D + 
Sbjct: 64  IRYKNGKEDSGNLHVFVNPKILAYSEEKNRYTEGCLSIPNVYAPVERPLSITVQYTDLDG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +  +    GL A C+ HE DH+NG+LFID   R+K+    K++  L++
Sbjct: 124 KTCVEDFSGLEARCILHENDHINGVLFID---RIKKGNERKQLDPLLK 168


>gi|104161993|emb|CAJ75702.1| N-formylmethionyl-tRNA deformylase [uncultured Thermotogales
           bacterium]
          Length = 166

 Score =  114 bits (284), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV   ++   +PILR VS  +E  + D+   +  + + MY  DG+GLAA Q+ V  R+ V
Sbjct: 1   MVGMKVIHIGNPILRNVSESVEVFDDDLRAFVKELSKTMYVEDGVGLAAPQVAVSRRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D        V INP+I++ SD+    +EGCLSIP   AD+ R + + + Y D   Q
Sbjct: 61  YDPGDGLR-----VVINPEILSKSDEIVKMEEGCLSIPGIYADIDRPSAVRIHYQDEYGQ 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           H         A  +QHE DHL G+LF+D+LS  KR M+  K++++++
Sbjct: 116 HHEEDLTEYPARIVQHESDHLEGVLFVDYLSASKRAMLKPKLNQIIK 162


>gi|161833710|ref|YP_001597906.1| peptide deformylase [Candidatus Sulcia muelleri GWSS]
 gi|189083080|sp|A8Z5V9|DEF_SULMW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|152206200|gb|ABS30510.1| peptide deformylase [Candidatus Sulcia muelleri GWSS]
          Length = 189

 Score =  114 bits (284), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 93/159 (58%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++I+ +  LR+    I+K   DI  LI+NM + MY   GIGL+A QIG+  RL +I+  
Sbjct: 4   PIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFIIEYN 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +K   VFINP II       + +EGCLSIP+   ++KR   I + Y D N +    
Sbjct: 64  NFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKKYKQ 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + +GLL+  +QHE DH+ G LFID++  LK  +I K  +
Sbjct: 124 HFNGLLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFN 162


>gi|257460312|ref|ZP_05625415.1| peptide deformylase [Campylobacter gracilis RM3268]
 gi|257442377|gb|EEV17517.1| peptide deformylase [Campylobacter gracilis RM3268]
          Length = 172

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 98/162 (60%), Gaps = 4/162 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P+  L + S  + K ++ +  L+D+M E M + +GIGLAA+Q+G   R ++I+L +
Sbjct: 5   VLTYPNKKLYQRSIEVVKFDAALGELLDDMYETMIAKNGIGLAAIQVGRPVRALIINLAN 64

Query: 66  HAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                 +K+ +  INP+I+    +  V+QEGCLS+P +  DV R+ FITV++ D      
Sbjct: 65  EEKIQDKKDLIEIINPQILKKEGEV-VFQEGCLSVPGFYEDVTRAEFITVQFQDRAGNTH 123

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + A  LLA C+QHE+DHL+G LFI+ +   KR    K+  K
Sbjct: 124 EMDASELLAVCIQHEMDHLDGHLFIERIGYNKRKKFDKEFKK 165


>gi|118581913|ref|YP_903163.1| peptide deformylase [Pelobacter propionicus DSM 2379]
 gi|118504623|gb|ABL01106.1| peptide deformylase [Pelobacter propionicus DSM 2379]
          Length = 168

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 102/166 (61%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M   P++ +P P+L+++   +  I+ +I  LI ++L+ M +  G +G+AA QIGV  R  
Sbjct: 1   MAIHPILRYPHPLLKKICHEVTGIDREIHALIQDLLDTMRAGPGSVGVAAPQIGVTLRAC 60

Query: 60  VIDLQDHAH-RKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+ +  + R+N    +  INP+II  S   +V +EGC+S+PDY  DV+RS  + V ++
Sbjct: 61  VVDVSNSRNGRENNHGLLRMINPRIIARSGS-AVMREGCMSVPDYTGDVERSTELRVSFL 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           +   + + I A G  A  LQHE+DHL+GILF+D +  +K  +  +K
Sbjct: 120 EPEGELREITASGFEAVALQHEMDHLDGILFLDRIVSVKTGLFRRK 165


>gi|194368702|pdb|3CPM|A Chain A, Plant Peptide Deformylase Pdf1b Crystal Structure
          Length = 193

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 89/160 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 19  IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 79  EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 138

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              L A   QHE DHL G+LF D ++    D I +++  L
Sbjct: 139 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 178


>gi|281355873|ref|ZP_06242367.1| peptide deformylase [Victivallis vadensis ATCC BAA-548]
 gi|281318753|gb|EFB02773.1| peptide deformylase [Victivallis vadensis ATCC BAA-548]
          Length = 197

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+L+  +RP+E +  +I  L  NM E +    G+G+AA Q+G   RLVV D+   +  +
Sbjct: 16  DPVLKAKARPVEAVTPEIRELACNMQEALRVFSGVGIAAPQVGESLRLVVFDIPVDSMGE 75

Query: 71  NPMV------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           NP V             INP+I+  SD      EGCLS+PD  A V R A +  R    +
Sbjct: 76  NPTVGEQLLLPRMPLTVINPEIVASSDVLCESDEGCLSVPDIWAPVVRPATVVFRATTLD 135

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +       GLL  C+QHELDHL+G+LF+D +S      I + + +L++
Sbjct: 136 GEVIECECGGLLGRCIQHELDHLDGVLFVDRVSPEAARTIERDLKQLIR 184


>gi|163785969|ref|ZP_02180417.1| peptide deformylase [Flavobacteriales bacterium ALC-1]
 gi|159877829|gb|EDP71885.1| peptide deformylase [Flavobacteriales bacterium ALC-1]
          Length = 196

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 12/173 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + D +L++ ++ I+K    +  LI+NM E MY   G+GLAA QIG+  RL ++D +
Sbjct: 4   PIVAYGDAVLKKKAKDIDKDYPKLNELIENMYETMYGAYGVGLAAPQIGLPIRLFLVDTE 63

Query: 65  DHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A             +     FIN +I+    D   + EGCLSIPD R DV R   I +
Sbjct: 64  PFAEDESFSEEEQEQLKNFKKTFINAQILEEEGDEWAFNEGCLSIPDVREDVFRQPKIKI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +Y D N +  I   DGL+A  +QHE DH+ G+LF D LS  K+ +I  K++ +
Sbjct: 124 QYQDENFEIHIEEYDGLIARVIQHEYDHIEGVLFTDKLSSFKKRLIKGKLTNI 176


>gi|221640346|ref|YP_002526608.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|221161127|gb|ACM02107.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
          Length = 167

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+D 
Sbjct: 3   RPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVVDC 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +   R   +   NP+I+  S  F  ++EG  ++P   A + R   +TVR+++   + + 
Sbjct: 63  SE--SRGKAIRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGETEE 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                + AT +QH++DHL+G L+ID LS LKR M+  K  K ++
Sbjct: 121 RDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|46199964|ref|YP_005631.1| polypeptide deformylase, fms protein-like protein [Thermus
           thermophilus HB27]
 gi|55980290|ref|YP_143587.1| peptide deformylase [Thermus thermophilus HB8]
 gi|1169265|sp|P43522|DEF_THETH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81678630|sp|Q5SLH2|DEF_THET8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81699227|sp|Q72H33|DEF_THET2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|602914|emb|CAA55695.1| N-formylmethionylaminoacyl-tRNA deformylase [Thermus thermophilus]
 gi|46197591|gb|AAS82004.1| polypeptide deformylase, fms protein-like protein [Thermus
           thermophilus HB27]
 gi|55771703|dbj|BAD70144.1| polypeptide deformylase [Thermus thermophilus HB8]
          Length = 192

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 14/164 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-VVIDL 63
           P+ ++ DP+LRR +RP+E   S I  L ++MLE M+   G+GLAA QIG+  RL V ++ 
Sbjct: 4   PIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEY 62

Query: 64  QDH--AHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITV 112
            D      + P+        V  NP +IT+ +      EGCLS+P  Y  +V R+  I V
Sbjct: 63  ADEPEGEEERPLRELVRRVYVVANP-VITYREGLVEGTEGCLSLPGLYSEEVPRAERIRV 121

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            Y D   + +++  +G +A   QHE+DHL+GILF + L + KR+
Sbjct: 122 EYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKRE 165


>gi|32266068|ref|NP_860100.1| peptide deformylase [Helicobacter hepaticus ATCC 51449]
 gi|39930847|sp|Q7VIN5|DEF_HELHP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|32262117|gb|AAP77166.1| N-formylmethionyl-tRNA deformylase [Helicobacter hepaticus ATCC
           51449]
          Length = 181

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 93/146 (63%), Gaps = 5/146 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----Q 64
           +P+ +LR+ S P+E  + ++ N +D+M E +  + G+GLAA+Q+G   R+++I++     
Sbjct: 16  YPNALLRKKSIPVEIFDDNLHNFLDDMYETLIESKGVGLAAIQVGRAERILIINIPREED 75

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              ++++ +  INP  +T  ++   ++EGCLS+PD+   +KR   +++ Y D     +I+
Sbjct: 76  KQQYKEDLLEIINPTFLT-QEECVEWEEGCLSVPDFYESIKRFDKVSIAYKDRYGNDRIL 134

Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150
            A G LA  +QHE+DHLNG+LF+D L
Sbjct: 135 KAQGFLAVAIQHEIDHLNGVLFVDKL 160


>gi|257469368|ref|ZP_05633462.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185]
 gi|317063614|ref|ZP_07928099.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185]
 gi|313689290|gb|EFS26125.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185]
          Length = 173

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--QDH 66
           + DP+LR  +  +E ++ +I  ++ +M E MY   G+GLAA QIG+  R++V+D   +  
Sbjct: 8   YGDPVLREKTVEVETVDDNIREILQDMAETMYDKKGVGLAAPQIGISKRMLVLDWSGEGE 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
           A RK     +NP I   +++   ++EGCLSIP     V+R A I V Y++   +      
Sbjct: 68  ALRK----VVNPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIRVDYLNEKGEKVTEEL 123

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +G  A  +QHE DHL  +LF+D +S + + M+TKK+  L
Sbjct: 124 EGFPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQAL 162


>gi|1072950|pir||A55228 fms protein homolog - Thermus aquaticus (fragment)
          Length = 191

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 14/164 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-VVIDL 63
           P+ ++ DP+LRR +RP+E   S I  L ++MLE M+   G+GLAA QIG+  RL V ++ 
Sbjct: 3   PIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEY 61

Query: 64  QDH--AHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITV 112
            D      + P+        V  NP +IT+ +      EGCLS+P  Y  +V R+  I V
Sbjct: 62  ADEPEGEEERPLRELVRRVYVVANP-VITYREGLVEGTEGCLSLPGLYSEEVPRAERIRV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            Y D   + +++  +G +A   QHE+DHL+GILF + L + KR+
Sbjct: 121 EYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKRE 164


>gi|57237196|ref|YP_178208.1| peptide deformylase [Campylobacter jejuni RM1221]
 gi|86149710|ref|ZP_01067940.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86153727|ref|ZP_01071930.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597153|ref|ZP_01100388.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|148926356|ref|ZP_01810040.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|153951420|ref|YP_001397439.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|157414500|ref|YP_001481756.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|205356562|ref|ZP_03223325.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|218561870|ref|YP_002343649.1| peptide deformylase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|17432957|sp|Q9PIT8|DEF_CAMJE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|57166000|gb|AAW34779.1| peptide deformylase [Campylobacter jejuni RM1221]
 gi|85839978|gb|EAQ57237.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85842688|gb|EAQ59900.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88190214|gb|EAQ94188.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359576|emb|CAL34360.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|145844748|gb|EDK21853.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|152938866|gb|ABS43607.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|157385464|gb|ABV51779.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|205345567|gb|EDZ32207.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|284925483|gb|ADC27835.1| peptide deformylase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|307747142|gb|ADN90412.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni M1]
 gi|315057628|gb|ADT71957.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni S3]
 gi|315928123|gb|EFV07441.1| peptide deformylase [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930199|gb|EFV09314.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 305]
          Length = 175

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 99/158 (62%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV+K ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R+++
Sbjct: 1   MVRK-IITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLL 59

Query: 61  I---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +   D  D   +++ +  INP+II   ++     EGCLS+PD+  +VKR   I ++Y D 
Sbjct: 60  VNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             + + + A G LA  +QHE DHLNG LFI+ +S  KR
Sbjct: 120 FGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157


>gi|114566758|ref|YP_753912.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318216|sp|Q0AXL3|DEF_SYNWW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114337693|gb|ABI68541.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 152

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 90/143 (62%), Gaps = 6/143 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++  P+ ILR  + P+++IN+ ++ ++DNM + MY+ DG+GLAA QIG+  R++V+D+ +
Sbjct: 6   VITVPNDILRGKALPVKEINAGVLRVLDNMRDTMYAADGVGLAAPQIGIPKRMIVVDIGE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                N +  INP+I+   +   +  EGCLS+P     V R+  + V+ +D N Q     
Sbjct: 66  -----NLLELINPEILK-QEGNQLGSEGCLSVPGIVGRVNRAKKVLVKGLDRNGQELNFA 119

Query: 126 ADGLLATCLQHELDHLNGILFID 148
           A  LLA  LQHE+DHL GILFID
Sbjct: 120 AVDLLAKVLQHEIDHLEGILFID 142


>gi|308069676|ref|YP_003871281.1| peptide deformylase (PDF) [Paenibacillus polymyxa E681]
 gi|305858955|gb|ADM70743.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681]
          Length = 165

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 88/143 (61%), Gaps = 4/143 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V+ PD +L +V++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+V+D  D
Sbjct: 6   IVLEPDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIVVDAGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  INP+I+    +    +  CLSIP    DV+R+  +TV+ +D   +   + 
Sbjct: 66  E---HGLIKMINPEIVAEEGEELGPEG-CLSIPGLNGDVRRAEKVTVKGLDREGKAITVT 121

Query: 126 ADGLLATCLQHELDHLNGILFID 148
           A GLL+   QHE+DHLNGILF D
Sbjct: 122 ATGLLSRAFQHEIDHLNGILFTD 144


>gi|313901452|ref|ZP_07834909.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM
           13965]
 gi|313468280|gb|EFR63737.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM
           13965]
          Length = 540

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/143 (37%), Positives = 87/143 (60%), Gaps = 5/143 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +P+LR  ++P+ ++  +I  L+D M   MY+ DGIGLAA Q+GV  R++V+D+ D     
Sbjct: 32  EPVLRTPAQPVARVTREIRQLLDRMAATMYAADGIGLAAPQVGVSKRVIVVDVGD----- 86

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+   ++     EGCLS+P   A+V+R   + V  +D   +   I  +G+L
Sbjct: 87  GLIELINPEIVRRGEEVEAAYEGCLSLPRLLAEVERPTSVQVTGLDRRGRRIWIEGEGVL 146

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A CLQHE+DHL+G+L  D   ++
Sbjct: 147 ARCLQHEIDHLDGVLITDRARKV 169


>gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]
          Length = 273

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 89/160 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 83  IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              L A   QHE DHL G+LF D ++    D I +++  L
Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 242


>gi|15241461|ref|NP_196970.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide
           deformylase [Arabidopsis thaliana]
 gi|30684999|ref|NP_850821.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide
           deformylase [Arabidopsis thaliana]
 gi|39932734|sp|Q9FUZ2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=AtDEF2;
           Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide
           deformylase; Flags: Precursor
 gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana]
 gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana]
 gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana]
 gi|332004676|gb|AED92059.1| peptide deformylase 1B [Arabidopsis thaliana]
 gi|332004677|gb|AED92060.1| peptide deformylase 1B [Arabidopsis thaliana]
          Length = 273

 Score =  114 bits (284), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 89/160 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 83  IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              L A   QHE DHL G+LF D ++    D I +++  L
Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 242


>gi|147678126|ref|YP_001212341.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum
           SI]
 gi|189083075|sp|A5D1C0|DEF_PELTS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146274223|dbj|BAF59972.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum
           SI]
          Length = 155

 Score =  114 bits (284), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 89/150 (59%), Gaps = 6/150 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V   D IL+  ++ + KIN +I+ L+DNM E MY   G+GLAA QIGV  R++V+D+ +
Sbjct: 6   IVELGDRILKERAKEVPKINQNIIKLLDNMAETMYHARGVGLAAPQIGVSKRVIVVDVGE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  INP +IT         EGCLSIP    DV R++ I V+ +D   +   + 
Sbjct: 66  -----GLLEMINP-VITSCAGHETDSEGCLSIPGIVGDVTRASVIEVKGLDRRGKPLEVK 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           A G LA  LQHE+DHL+GILFI+    +++
Sbjct: 120 AKGYLARALQHEIDHLDGILFIEKAKNIRK 149


>gi|297621379|ref|YP_003709516.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044]
 gi|297376680|gb|ADI38510.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044]
          Length = 174

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           L  + DP LR+  +P+E+IN++I  L++NM+E +   +GIGLAA QI    RL +  +  
Sbjct: 5   LAYYGDPFLRKKCKPVEEINNEIRELVENMVETLVEYNGIGLAAPQIKQDLRLFITAVPK 64

Query: 66  H-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                   +   +VFINP+I+++S++    QEGCLSIP    +V R   I ++  D    
Sbjct: 65  ELPNGDWEQGELIVFINPEIVSYSEETEDRQEGCLSIPKLYGNVNRPVRIVIKATDMEGN 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                 +GL A C  HE DH+NG+L+ID +   +R ++  K+ ++
Sbjct: 125 VFERKFEGLQARCCLHENDHINGVLYIDRIRGKERKLLEPKLREI 169


>gi|121612384|ref|YP_999910.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004870|ref|ZP_02270628.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250043|gb|EAQ73001.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 175

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 100/158 (63%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV+K ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R+++
Sbjct: 1   MVRK-IITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLL 59

Query: 61  IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++    D   +++ +  INP+II   ++     EGCLS+PD+  +VKR   I ++Y D 
Sbjct: 60  VNIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             + + + A G LA  +QHE DHLNG LFI+ +S  KR
Sbjct: 120 FGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157


>gi|40889670|pdb|1RL4|A Chain A, Plasmodium Falciparum Peptide Deformylase Complex With
           Inhibitor
 gi|40889671|pdb|1RL4|B Chain B, Plasmodium Falciparum Peptide Deformylase Complex With
           Inhibitor
          Length = 188

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V +PDPILRR S  +   + ++  ++  M ++MY + GIGL+A Q+ +  R++V + L 
Sbjct: 11  IVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALY 70

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +    +N  +FINP I+  S       EGCLS P     V+R + +++ Y D N    + 
Sbjct: 71  EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 130

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ +   QHE DHLNG LFID ++++ +  +  K+++L++
Sbjct: 131 ILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 173


>gi|332876937|ref|ZP_08444690.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685045|gb|EGJ57889.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 192

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ + DP+LR+V+  I     ++  LI NM + M    G+GLAA QIG+  RL V+D  
Sbjct: 4   PIIAYGDPVLRKVATDISPDYPNLNTLIANMYDTMNYAYGVGLAAPQIGLPIRLFVVDTA 63

Query: 65  DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A   +               FIN KI   + D  ++ EGCLSIP  R DV R   IT+
Sbjct: 64  PFADDDDLTEEERTFLSNFKKTFINAKITEETGDKWLFNEGCLSIPGVREDVSRQKQITI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            ++D     Q +   GL A  +QHE DH+ GILF D LS  K+ +I  K++ +
Sbjct: 124 EFVDEQFTPQRLTLTGLAARVVQHEYDHIEGILFTDKLSSFKKQLIKGKLTNI 176


>gi|296133300|ref|YP_003640547.1| peptide deformylase [Thermincola sp. JR]
 gi|296031878|gb|ADG82646.1| peptide deformylase [Thermincola potens JR]
          Length = 150

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 86/148 (58%), Gaps = 6/148 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V   DPIL+   RP+ KI  +I+ L+D+M + MY  +G+GLAA QIGV  R++V+D+ D
Sbjct: 6   IVEIGDPILKEKCRPVNKITPNIIKLLDDMADTMYDANGVGLAAPQIGVGKRVIVVDVGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  +NP+I+   +      EGCLSIP  +  V R A + VR M+         
Sbjct: 66  GL-----IELVNPEIV-HREGSETDVEGCLSIPGIQGQVPRYAKVRVRGMNREGNRVEYE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153
           A+GLLA   QHE+DHL GILFID    +
Sbjct: 120 AEGLLARAFQHEIDHLEGILFIDRAKEI 147


>gi|163815237|ref|ZP_02206614.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759]
 gi|158449432|gb|EDP26427.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759]
          Length = 155

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 84/138 (60%), Gaps = 5/138 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+  RP+ K++   + LID+M + MY  +G+GLAA Q+G+L R+VVID+ D     
Sbjct: 11  DDILRKTCRPVTKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVVIDVCD----D 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           NP+  INP+II  +D     +EGCLS+P     V R   +  +  D N +   +  +GLL
Sbjct: 67  NPLCLINPEIIE-ADGEQTGEEGCLSLPGKFGTVTRPMHVVCKAYDENMEEFTVEGEGLL 125

Query: 131 ATCLQHELDHLNGILFID 148
           A  + HELDHL+G L+ D
Sbjct: 126 ARAICHELDHLDGKLYKD 143


>gi|77464453|ref|YP_353957.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|77388871|gb|ABA80056.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1]
          Length = 163

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +   P E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGRMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++      EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q  +  G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|312134885|ref|YP_004002223.1| peptide deformylase [Caldicellulosiruptor owensensis OL]
 gi|311774936|gb|ADQ04423.1| peptide deformylase [Caldicellulosiruptor owensensis OL]
          Length = 166

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I+ D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRIYEDEILRKKSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+ I +S+   V  EGCLS+P+   +V+R   + V   D    
Sbjct: 61  IDIGEGA-----IELVNPQ-IEYSEGSVVDVEGCLSVPNMWGEVERPQKVVVNAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164
              + A+GLLA  L HE+DHL+GILF+D + R +  + I ++ S+
Sbjct: 115 EFRLEAEGLLARALCHEIDHLDGILFVDKVIRFVSEEEIEQRRSR 159


>gi|268680776|ref|YP_003305207.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618807|gb|ACZ13172.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
          Length = 171

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 6/154 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++++P+ ILR  SR +   ++ +  L+D+M E M + +GIGLAA+QIGV    ++I+L
Sbjct: 3   REILVYPNKILRETSRDVIHFDATLHELLDDMYETMITKEGIGLAAIQIGVAQNALIINL 62

Query: 64  QDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD-CNA 119
            D      ++N    INP +I   D  +VYQEGCLS+P Y  +V R+  I +R+ D    
Sbjct: 63  VDETGLQKKENLYEIINP-VILEKDGSTVYQEGCLSVPGYYDEVTRAEHIKLRFYDRMGV 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            H+  + D L+A  +QHE+DHL G LFI+ LS L
Sbjct: 122 MHEEEFRD-LMAIAVQHEMDHLKGHLFIEKLSYL 154


>gi|163733889|ref|ZP_02141331.1| peptide deformylase, putative [Roseobacter litoralis Och 149]
 gi|161393000|gb|EDQ17327.1| peptide deformylase, putative [Roseobacter litoralis Och 149]
          Length = 165

 Score =  113 bits (283), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 95/157 (60%), Gaps = 2/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR  +  + +I  D++ + D+M++ M +  G+GLAA QIGV+ RL V+D  D   
Sbjct: 9   WPDARLRTAAADVPEITPDVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAVVDASDSRD 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +   NP+II  S   + ++E   ++P   A V+R   +TVR+MD    +      G
Sbjct: 69  RR--IRLANPEIIEASAIMNDHEEASPNLPGVFAKVRRPRGVTVRFMDETGTYVRRDFVG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           L AT +QH++DHL G ++ D+LS++KRDM+ +K  KL
Sbjct: 127 LEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163


>gi|126662042|ref|ZP_01733041.1| peptide deformylase [Flavobacteria bacterium BAL38]
 gi|126625421|gb|EAZ96110.1| peptide deformylase [Flavobacteria bacterium BAL38]
          Length = 195

 Score =  113 bits (283), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  + +P+LR+V   I     ++   I NM E MY   G+GLAA Q+G+  RL ++D +
Sbjct: 4   PIYGYGEPVLRKVGEDISPEYPNLKETIVNMYETMYHAHGVGLAAPQVGLPIRLFIVDTE 63

Query: 65  -----DHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                D   ++   +       FIN KII    D   + EGCLSIPD R DV R   IT+
Sbjct: 64  PFSDSDDVSKEEAALMKDFKKTFINAKIIKEEGDVWGFNEGCLSIPDVREDVFRHDTITI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            Y D +   +    DGL+A  +QHE DH+ GILF DH+S
Sbjct: 124 EYFDEDFNKKTEVYDGLIARVIQHEYDHIEGILFTDHIS 162


>gi|125973086|ref|YP_001036996.1| peptide deformylase [Clostridium thermocellum ATCC 27405]
 gi|256004589|ref|ZP_05429567.1| peptide deformylase [Clostridium thermocellum DSM 2360]
 gi|281417281|ref|ZP_06248301.1| peptide deformylase [Clostridium thermocellum JW20]
 gi|158513246|sp|A3DCX4|DEF_CLOTH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|125713311|gb|ABN51803.1| peptide deformylase [Clostridium thermocellum ATCC 27405]
 gi|255991461|gb|EEU01565.1| peptide deformylase [Clostridium thermocellum DSM 2360]
 gi|281408683|gb|EFB38941.1| peptide deformylase [Clostridium thermocellum JW20]
 gi|316940693|gb|ADU74727.1| peptide deformylase [Clostridium thermocellum DSM 1313]
          Length = 170

 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+VS+ ++ I+  I  L+D+M E MY+ +G+GLAA Q+GVL R+VVID+ D     
Sbjct: 11  DEILRKVSKKVDVIDERIKTLLDDMAETMYAANGVGLAAPQVGVLKRVVVIDVGD----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             M  INP+I+   +   +  EGCLSIP    +VKR A + V  ++   +   +    LL
Sbjct: 66  GLMELINPEIVE-QEGEQIDIEGCLSIPGVAGEVKRPARVVVEALNREGEKITVEGKELL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  L HE+DHL+GILF D + R 
Sbjct: 125 AVALCHEIDHLDGILFTDKVIRF 147


>gi|302671348|ref|YP_003831308.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316]
 gi|302395821|gb|ADL34726.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316]
          Length = 163

 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 88/141 (62%), Gaps = 5/141 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +  + +++I   I  L+++MLE MY  +G+GLAA Q+G+L R+ VID+      +
Sbjct: 11  DDVLVKNCKEVKEITPRIKELVEDMLETMYEANGVGLAAPQVGILKRIFVIDVTG----E 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +PMVFINP+I+  S + + Y EGCLS+P     V R+ ++  +  D +    II  + LL
Sbjct: 67  DPMVFINPEILETSGEQTGY-EGCLSVPGKSGIVTRANYVKAKATDLDGNEFIIEGEELL 125

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  +QHE DHLNG +++D + 
Sbjct: 126 ARAIQHENDHLNGKMYVDKVE 146


>gi|226312666|ref|YP_002772560.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
 gi|226095614|dbj|BAH44056.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
          Length = 175

 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 97/165 (58%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M ++ +V   DPILR  S+ ++ I   +  ++D+M++ +Y+  G  GL+A+QIG+  RLV
Sbjct: 1   MAERMIVRLGDPILRETSKRVQSITPQVEKILDDMVQTIYAAKGRAGLSAIQIGIPKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D          +  INP ++  S +  V QE CLSIP     V+R+ ++ V+ ++   
Sbjct: 61  VMDCGS-----GLIELINPVLMEKSGE-QVGQEACLSIPGVFGIVRRANYVKVQTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + + I A+  LA C+QHE+DHL GILFIDH   L      KK+++
Sbjct: 115 ETKTIEAEDFLARCIQHEMDHLEGILFIDHTEELYSAKTGKKLNR 159


>gi|283955632|ref|ZP_06373125.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792857|gb|EFC31633.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 175

 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 98/158 (62%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV+K ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R ++
Sbjct: 1   MVRK-IITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRALL 59

Query: 61  I---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +   D  D   +++ +  INP+II   ++     EGCLS+PD+  +VKR   I ++Y D 
Sbjct: 60  VNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             + + + A G LA  +QHE DHLNG LFI+ +S  KR
Sbjct: 120 FGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157


>gi|260574966|ref|ZP_05842968.1| peptide deformylase [Rhodobacter sp. SW2]
 gi|259022971|gb|EEW26265.1| peptide deformylase [Rhodobacter sp. SW2]
          Length = 167

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 6/158 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  L+ V+ P+ +I  ++  +  +M+E M    G+GLAA QIGV+ RL V+D  +   
Sbjct: 9   YPDRRLKTVAEPVAEITDEVRAIWADMVETMDDMPGVGLAAPQIGVMLRLAVVDCSE--T 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127
           R   ++  NP+++  S     + EG  ++P   A + R   +TVR++  NAQ Q+   D 
Sbjct: 67  RGQAVLMANPEVLHASGQMREHDEGSPNLPGVSAVISRPRAVTVRFL--NAQGQVEERDF 124

Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             L AT +QH++DHLNG L+IDHLS LKR M+  K  K
Sbjct: 125 VNLWATSVQHQIDHLNGKLYIDHLSPLKRKMLIAKSQK 162


>gi|19704492|ref|NP_604054.1| polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|23396540|sp|Q8REF0|DEF_FUSNN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|19714766|gb|AAL95353.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 174

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 98/159 (61%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ V D  + 
Sbjct: 8   YGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIFVCDDGNG 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             RK     INP I+  +++   ++EGCLS+P     V+R   + ++Y++   +     A
Sbjct: 68  VLRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYGKEVEEIA 123

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +  LA  +QHE DHL+GILFI+ +S + + +I KK++ +
Sbjct: 124 ENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANI 162


>gi|108762860|ref|YP_635455.1| peptide deformylase [Myxococcus xanthus DK 1622]
 gi|108466740|gb|ABF91925.1| peptide deformylase [Myxococcus xanthus DK 1622]
          Length = 168

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 5/164 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +VI+P  +L   ++P+      +  L++ M E M   +GIG+AA Q+G   R+ ++  +D
Sbjct: 5   IVIWPHKVLTSSTKPVTDFGPPLETLLEQMAESMKEAEGIGIAANQVGESLRVALVGRED 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                     +NP+I+   +  ++ +EGCLS+P       R   + VRY D +A+   + 
Sbjct: 65  GTF----FEIVNPQILEKKEPVTM-EEGCLSVPREWEKCPRFHKVKVRYQDKSAEWHELE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A+G LA  LQHE+DHL+G +F+DHLS LKR +I  +M KL +++
Sbjct: 120 AEGRLAHVLQHEIDHLDGHVFVDHLSSLKRTLILDRMKKLQKVK 163


>gi|296328150|ref|ZP_06870681.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154662|gb|EFG95448.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 174

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 98/159 (61%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ V D  + 
Sbjct: 8   YGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIFVCDDGNG 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             RK     INP I+  +++   ++EGCLS+P     V+R   + ++Y++   +     A
Sbjct: 68  VLRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYGKEVEEIA 123

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +  LA  +QHE DHL+GILFI+ +S + + +I KK++ +
Sbjct: 124 ENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANI 162


>gi|221640345|ref|YP_002526607.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|221161126|gb|ACM02106.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
          Length = 163

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +   P E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++      EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q  +  G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|254451672|ref|ZP_05065109.1| peptide deformylase [Octadecabacter antarcticus 238]
 gi|198266078|gb|EDY90348.1| peptide deformylase [Octadecabacter antarcticus 238]
          Length = 165

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +P   LR  +  + +I  DI  L D M+  M +  G+GLAA Q+GV  RL V
Sbjct: 1   MPHRPFIPWPAKALRTPAVEVTEITDDIRALWDEMINAMDAMPGVGLAAPQLGVSLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R + +   NP I+  S +  +++E   ++P   A ++R   +TVR+M+    
Sbjct: 61  VDASDK--RGSAIRMANPTILHASHELRLHEEASPNLPGLSASLERPRAVTVRFMNDAGM 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +      GL AT +QH++DHL+G ++ D LSR KRDM+ KK  KL
Sbjct: 119 YDRRDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163


>gi|282856366|ref|ZP_06265645.1| peptide deformylase [Pyramidobacter piscolens W5455]
 gi|282585737|gb|EFB91026.1| peptide deformylase [Pyramidobacter piscolens W5455]
          Length = 159

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 6/159 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V FPDP+LRR +RP+   +  +   +D M  VM   DG+G+AA Q+GV  ++ V+  + 
Sbjct: 5   IVEFPDPVLRRATRPVTVFDEALKTFVDEMTIVMKDDDGVGIAAPQVGVSKKVAVVCFEG 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             +     V +NP +I  +      +EGCLS P    +V+R+  + V   D     +   
Sbjct: 65  ERY-----VLVNP-VIVEATGTQRGEEGCLSFPGIFGEVERAERVVVECQDETGAKRRHE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A+G +A   QHE++HL G L IDH S +KR++I K++ K
Sbjct: 119 AEGFVARAFQHEIEHLEGKLLIDHFSPMKRELIRKRLMK 157


>gi|148655206|ref|YP_001275411.1| peptide deformylase [Roseiflexus sp. RS-1]
 gi|254767600|sp|A5US58|DEF_ROSS1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148567316|gb|ABQ89461.1| peptide deformylase [Roseiflexus sp. RS-1]
          Length = 185

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 90/162 (55%), Gaps = 18/162 (11%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-------- 64
           IL     P+   N  +  L+ +M E M++  G+GLAA QIG+  RL VI +         
Sbjct: 17  ILTTRCHPVRLPNPALKQLVADMFETMHAASGVGLAAPQIGITQRLAVISIPPVVEERPD 76

Query: 65  ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               + A  +N  V INP+II  SD   V  EGCLS+P +  +V R+A++TV Y D N +
Sbjct: 77  GSKVEVAPEQN-FVLINPEIIKASDQEDVGLEGCLSLPGWYGEVPRAAWVTVEYTDLNGR 135

Query: 121 HQ-IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            Q I  A GLL   LQHE+DHL+GILF + +    RD+ T K
Sbjct: 136 RQRIRRATGLLGRALQHEIDHLDGILFTERI----RDLSTLK 173


>gi|312793226|ref|YP_004026149.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312876962|ref|ZP_07736937.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796277|gb|EFR12631.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180366|gb|ADQ40536.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 166

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+ I  S+  +V  EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGA-----IELVNPE-IEHSEGSAVDVEGCLSVPNVWGEVERPQKVIVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164
              + A+GLLA  + HE+DHL+GILF+D + R +  + I ++ SK
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSK 159


>gi|167040394|ref|YP_001663379.1| peptide deformylase [Thermoanaerobacter sp. X514]
 gi|300914478|ref|ZP_07131794.1| peptide deformylase [Thermoanaerobacter sp. X561]
 gi|307724286|ref|YP_003904037.1| peptide deformylase [Thermoanaerobacter sp. X513]
 gi|238687587|sp|B0K292|DEF_THEPX RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166854634|gb|ABY93043.1| peptide deformylase [Thermoanaerobacter sp. X514]
 gi|300889413|gb|EFK84559.1| peptide deformylase [Thermoanaerobacter sp. X561]
 gi|307581347|gb|ADN54746.1| peptide deformylase [Thermoanaerobacter sp. X513]
          Length = 166

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 92/143 (64%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++P+ +INS I+ ++++M + MY  DG+GLAA QIGVL RLVVID+ +     
Sbjct: 11  DEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVVIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+ + +   V  EGCLSIP    +VKR   + V+Y+D   + + I  + LL
Sbjct: 66  GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGKEREIEGEDLL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  L HE+DHLNG+LFID   R 
Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147


>gi|254477587|ref|ZP_05090973.1| peptide deformylase [Ruegeria sp. R11]
 gi|214031830|gb|EEB72665.1| peptide deformylase [Ruegeria sp. R11]
          Length = 165

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 6/160 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR  +  + +I  D+  L  +M++ M +  G+GLAA QIGVL RL V+D    + 
Sbjct: 9   WPDKHLRSRAVEVSEITDDVRALWQDMIDTMEAMPGVGLAANQIGVLQRLAVVD--GSSE 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127
           R   +   NP+I+  S     + E   ++P   A +KR   +TVRYMD N +   +  D 
Sbjct: 67  RGRAVRMANPEILHASVALREHDEASPNLPGVSAKIKRPRAVTVRYMDENGE--TVERDF 124

Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K  KL 
Sbjct: 125 VGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLLRKAKKLT 164


>gi|124506707|ref|XP_001351951.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7]
 gi|23504979|emb|CAD51762.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7]
          Length = 241

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V +PDPILRR S  +   + ++  ++  M ++MY + GIGL+A Q+ +  R++V + L 
Sbjct: 67  IVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALY 126

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +    +N  +FINP I+  S       EGCLS P     V+R + +++ Y D N    + 
Sbjct: 127 EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 186

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ +   QHE DHLNG LFID ++++ +  +  K+++L++
Sbjct: 187 ILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 229


>gi|254302996|ref|ZP_04970354.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323188|gb|EDK88438.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 174

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 98/159 (61%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ V D  + 
Sbjct: 8   YGEDVLKQIAKEVEINEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIFVCDDGNG 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             RK     INP I+  +++   ++EGCLS+P     V+R   + ++Y++   +     A
Sbjct: 68  VVRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYGEEIEEIA 123

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +  LA  +QHE DHL+GILF++ +S + + +I KK++ +
Sbjct: 124 ENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANM 162


>gi|293977820|ref|YP_003543250.1| peptide deformylase [Candidatus Sulcia muelleri DMIN]
 gi|292667751|gb|ADE35386.1| peptide deformylase [Candidatus Sulcia muelleri DMIN]
          Length = 189

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 92/159 (57%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++I+ +  LR+    I+K   DI  LI+NM + MY   GIGL+A QIG+  RL +I+  
Sbjct: 4   PIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFIIEYN 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +K   VFINP II       + +EGCLSIP+   ++KR   I + Y D N +    
Sbjct: 64  NFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKKYKQ 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + +G L+  +QHE DH+ G LFID++  LK  +I K  +
Sbjct: 124 HFNGFLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFN 162


>gi|78188466|ref|YP_378804.1| peptide deformylase [Chlorobium chlorochromatii CaD3]
 gi|78170665|gb|ABB27761.1| peptide deformylase [Chlorobium chlorochromatii CaD3]
          Length = 199

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 102/165 (61%), Gaps = 5/165 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P+ I+   +LR+ ++P++ ++ +I  LI  M E M++  GIGLAA Q+G   RL+V+D  
Sbjct: 15  PITIYSHEVLRQKAKPLKGVDKEIETLIAAMFESMHNASGIGLAAPQVGRSLRLLVLDVS 74

Query: 63  -LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            L+++   K PMV INP I++     ++ +EGCLS+P  + DV R + IT++Y +   + 
Sbjct: 75  CLKNYKDEK-PMVVINPHILSVRGACAM-EEGCLSVPGVQGDVVRPSAITMKYRNERFEE 132

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                 G++A  LQHE+DHL+G LF+D + +  +  I  ++++L 
Sbjct: 133 LTAEFSGMVARVLQHEIDHLDGKLFVDRMDKRDKRKIQHELNELT 177


>gi|255019795|ref|ZP_05291871.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
 gi|254970724|gb|EET28210.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
          Length = 171

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 98/162 (60%), Gaps = 8/162 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVID- 62
           P++ +PDP L R + P+E+ + ++ + + ++ E MY+   G+G+AA Q+  L R+V++D 
Sbjct: 5   PILTYPDPRLHRKAEPVEQFDEELRSFVADLTETMYAGPGGVGIAAPQVDRLQRIVLVDV 64

Query: 63  ---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              L D  H    +  INP++I + +  +V +EGC+S+PD+  +V R+  I V+  D + 
Sbjct: 65  RPKLGDDCH--GFLCLINPELIAW-EGMAVGREGCMSVPDFTGNVIRAERIQVQAQDLDG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           + +I    G  A  +QHE+DHL+G LF+D L   K D+  +K
Sbjct: 122 RSRIFECAGFEARAVQHEMDHLDGFLFLDRLVSRKTDLFRRK 163


>gi|269836415|ref|YP_003318643.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745]
 gi|269785678|gb|ACZ37821.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745]
          Length = 177

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 5/150 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-Q 64
           LV   DP LR+ +  I K++ D+  L  +MLE MY+ DG+GLA  Q+GV+ R++VI +  
Sbjct: 6   LVYEGDPRLRQKAVRIRKVDDDLRRLAADMLETMYAADGVGLAGPQVGVMRRIIVIGVPA 65

Query: 65  DHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              +  +P   M  INP+I+  S    V  EGCLSIP++  +V R+  +TV+  D + + 
Sbjct: 66  GFENEDDPPIEMALINPEIVRASG-RQVGPEGCLSIPNWYGEVPRAMHVTVKARDLDDRE 124

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I A G LA  LQHE+DHL+GILF D + 
Sbjct: 125 IRIKASGGLARILQHEIDHLDGILFTDRVE 154


>gi|326335909|ref|ZP_08202086.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691873|gb|EGD33835.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 198

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 14/174 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P++ + DP+LR+V  PI     ++  LI++M + MY + G+GLAA Q+G+  RL V+D  
Sbjct: 4   PIIAYGDPVLRKVCEPITADYPELSKLIEDMFQTMYKSHGVGLAAPQVGLPIRLFVVDTI 63

Query: 64  ----------QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                     ++  + KN    FIN KII+      ++ EGCLSIP    DV R   I +
Sbjct: 64  GFSENEDLTREEKEYLKNFKRPFINAKIISEEGTPWMFNEGCLSIPGINEDVSRKPTIEI 123

Query: 113 RYMDCNAQ-HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Y D     H+  ++ GL+A  +QHE DH  G LF D+LS  K+ ++  K++ +
Sbjct: 124 EYQDEQFNIHRETFS-GLVARVIQHEYDHTEGKLFTDYLSSFKKQLLKNKLNNI 176


>gi|217967822|ref|YP_002353328.1| peptide deformylase [Dictyoglomus turgidum DSM 6724]
 gi|254767580|sp|B8E0X7|DEF_DICTD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|217336921|gb|ACK42714.1| peptide deformylase [Dictyoglomus turgidum DSM 6724]
          Length = 153

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 86/139 (61%), Gaps = 6/139 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPIL+  ++ +EKI+  + NL+ +M+E M  ++G+GLAA Q+G   R++V+D ++     
Sbjct: 10  DPILKIKAKKVEKIDEKVKNLVRDMIETMKFSNGVGLAAPQVGESLRIIVVDYEE----- 64

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           NP+ FINP+I+    +   Y EGCLS+P     +KR+  I  +  D   + +   A GLL
Sbjct: 65  NPIAFINPEILEMDGEVLDY-EGCLSVPGVEVPIKRAERIIFKAQDLQGRTKRYKAKGLL 123

Query: 131 ATCLQHELDHLNGILFIDH 149
           A  +QHE+DHL GIL +D 
Sbjct: 124 ARVIQHEVDHLEGILILDR 142


>gi|313681059|ref|YP_004058798.1| peptide deformylase [Oceanithermus profundus DSM 14977]
 gi|313153774|gb|ADR37625.1| peptide deformylase [Oceanithermus profundus DSM 14977]
          Length = 199

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 101/181 (55%), Gaps = 18/181 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++ DP+LR+ +RP++   SD+  L +NM+E M+   G+GLAA Q+G+  RL V    
Sbjct: 6   PIRLYGDPVLRKKARPVQDF-SDLEELAENMVETMFEYGGVGLAAPQVGLSRRLFVAAEY 64

Query: 64  -------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAF 109
                        +  +  +N  V +NP+I T  +   V  EGCLSIP  Y  DV R   
Sbjct: 65  ALEEEEAEADEEERPKSALRNLYVMVNPRI-THREGTQVGTEGCLSIPGVYSDDVPRDLQ 123

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168
           I V Y D     + + A+G LA  +QHELDHL G+LF+D + + L+R  + +  ++L ++
Sbjct: 124 IRVEYQDVTGAPRTLEAEGYLARVIQHELDHLEGVLFLDRIPAELRRAFLEEHRAELAEM 183

Query: 169 R 169
           +
Sbjct: 184 Q 184


>gi|23500203|ref|NP_699643.1| peptide deformylase [Brucella suis 1330]
 gi|83269660|ref|YP_418951.1| peptide deformylase [Brucella melitensis biovar Abortus 2308]
 gi|161511169|ref|NP_541790.2| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|161620522|ref|YP_001594408.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163844620|ref|YP_001622275.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|189022926|ref|YP_001932667.1| peptide deformylase [Brucella abortus S19]
 gi|225686258|ref|YP_002734230.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|254691174|ref|ZP_05154428.1| peptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|254698957|ref|ZP_05160785.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254699710|ref|ZP_05161538.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|254702846|ref|ZP_05164674.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|254706033|ref|ZP_05167861.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|254711667|ref|ZP_05173478.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|254732404|ref|ZP_05190982.1| peptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|256015237|ref|YP_003105246.1| peptide deformylase [Brucella microti CCM 4915]
 gi|256029699|ref|ZP_05443313.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|256043351|ref|ZP_05446286.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256059334|ref|ZP_05449536.1| peptide deformylase [Brucella neotomae 5K33]
 gi|256111642|ref|ZP_05452632.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|256157852|ref|ZP_05455770.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|256253186|ref|ZP_05458722.1| peptide deformylase [Brucella ceti B1/94]
 gi|256256360|ref|ZP_05461896.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|256262606|ref|ZP_05465138.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544911|ref|ZP_05820732.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260564557|ref|ZP_05835042.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260568243|ref|ZP_05838712.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260756775|ref|ZP_05869123.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str.
           870]
 gi|260760206|ref|ZP_05872554.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str.
           292]
 gi|260763444|ref|ZP_05875776.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882591|ref|ZP_05894205.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68]
 gi|261220293|ref|ZP_05934574.1| peptide deformylase-like protein [Brucella ceti B1/94]
 gi|261313474|ref|ZP_05952671.1| peptide deformylase-like protein [Brucella pinnipedialis
           M163/99/10]
 gi|261319290|ref|ZP_05958487.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94]
 gi|261323293|ref|ZP_05962490.1| peptide deformylase-like protein [Brucella neotomae 5K33]
 gi|261750174|ref|ZP_05993883.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513]
 gi|261753446|ref|ZP_05997155.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686]
 gi|265986710|ref|ZP_06099267.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1]
 gi|265989773|ref|ZP_06102330.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993119|ref|ZP_06105676.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996360|ref|ZP_06108917.1| peptide deformylase-like protein [Brucella ceti M490/95/1]
 gi|54036957|sp|P63920|DEFL_BRUSU RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|54040933|sp|P63919|DEFL_BRUME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|23463805|gb|AAN33648.1| polypeptide deformylase [Brucella suis 1330]
 gi|82939934|emb|CAJ12948.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus
           2308]
 gi|161337333|gb|ABX63637.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163675343|gb|ABY39453.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|189021500|gb|ACD74221.1| Formylmethionine deformylase [Brucella abortus S19]
 gi|225642363|gb|ACO02276.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|255997897|gb|ACU49584.1| peptide deformylase [Brucella microti CCM 4915]
 gi|260098182|gb|EEW82056.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260152200|gb|EEW87293.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260154908|gb|EEW89989.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260670524|gb|EEX57464.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str.
           292]
 gi|260673865|gb|EEX60686.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676883|gb|EEX63704.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str.
           870]
 gi|260872119|gb|EEX79188.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68]
 gi|260918877|gb|EEX85530.1| peptide deformylase-like protein [Brucella ceti B1/94]
 gi|261298513|gb|EEY02010.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94]
 gi|261299273|gb|EEY02770.1| peptide deformylase-like protein [Brucella neotomae 5K33]
 gi|261302500|gb|EEY05997.1| peptide deformylase-like protein [Brucella pinnipedialis
           M163/99/10]
 gi|261739927|gb|EEY27853.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513]
 gi|261743199|gb|EEY31125.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686]
 gi|262550657|gb|EEZ06818.1| peptide deformylase-like protein [Brucella ceti M490/95/1]
 gi|262763989|gb|EEZ10021.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000442|gb|EEZ13132.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092392|gb|EEZ16645.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264658907|gb|EEZ29168.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1]
          Length = 164

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRAA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162


>gi|15594411|ref|NP_212199.1| peptide deformylase [Borrelia burgdorferi B31]
 gi|6014950|sp|O51092|DEF_BORBU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2687938|gb|AAC66445.1| polypeptide deformylase (def) [Borrelia burgdorferi B31]
          Length = 172

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+    
Sbjct: 10  MVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP II  S +FS Y+EGCLSIP    D+ R   + + + D N +   I 
Sbjct: 70  MAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 126

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 127 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 166


>gi|225452422|ref|XP_002276964.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296087647|emb|CBI34903.3| unnamed protein product [Vitis vinifera]
          Length = 275

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++  L+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 85  IVEYPDPILRAKNKLISTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVG 144

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP++  +S    ++ EGCLS P   ADV+R   + +   D      +I 
Sbjct: 145 ERGEGEEIVLVNPRVNKYSKKIVLFNEGCLSFPGIYADVERPESVKIDARDITGARFMIN 204

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             GL A   QHE DHL G LF D ++    D I   +  L
Sbjct: 205 LSGLPARVFQHEFDHLQGTLFFDRMTEEVLDSIHANLQDL 244


>gi|307565540|ref|ZP_07628020.1| peptide deformylase [Prevotella amnii CRIS 21A-A]
 gi|307345699|gb|EFN91056.1| peptide deformylase [Prevotella amnii CRIS 21A-A]
          Length = 186

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 96/169 (56%), Gaps = 6/169 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+  +  P+LR++++ I +   ++  LI +M E   ++DG+GLAA Q+G   R+VVIDL 
Sbjct: 4   PIYTYGQPVLRKIAQDIPESYPELQELIADMFETCSASDGVGLAAPQVGKPIRVVVIDLD 63

Query: 64  --QDH--AHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              D+   ++     FIN  I    D +  V +EGCLS+P     V+R   + V+++D N
Sbjct: 64  VVSDNFPEYKGFRHAFINGHITEVDDTETEVMEEGCLSLPGLHEKVERPKRVRVKWIDEN 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +    +  G LA  +QHE DHL G +F D +S  ++ MI KKM  L+Q
Sbjct: 124 MEEHHEWLSGFLARVVQHEFDHLEGKVFTDRVSPFRKQMIKKKMKALLQ 172


>gi|221217366|ref|ZP_03588837.1| peptide deformylase [Borrelia burgdorferi 72a]
 gi|224533957|ref|ZP_03674542.1| peptide deformylase [Borrelia burgdorferi CA-11.2a]
 gi|225549696|ref|ZP_03770661.1| peptide deformylase [Borrelia burgdorferi 118a]
 gi|221192644|gb|EEE18860.1| peptide deformylase [Borrelia burgdorferi 72a]
 gi|224512960|gb|EEF83326.1| peptide deformylase [Borrelia burgdorferi CA-11.2a]
 gi|225369656|gb|EEG99104.1| peptide deformylase [Borrelia burgdorferi 118a]
          Length = 165

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+    
Sbjct: 3   MVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP II  S +FS Y+EGCLSIP    D+ R   + + + D N +   I 
Sbjct: 63  MAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|225549344|ref|ZP_03770317.1| peptide deformylase [Borrelia burgdorferi 94a]
 gi|225370202|gb|EEG99642.1| peptide deformylase [Borrelia burgdorferi 94a]
          Length = 165

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+    
Sbjct: 3   MVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP II  S +FS Y+EGCLSIP    D+ R   + + + D N +   I 
Sbjct: 63  MAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|330952315|gb|EGH52575.1| peptide deformylase [Pseudomonas syringae Cit 7]
          Length = 119

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 78/119 (65%), Gaps = 2/119 (1%)

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
            Q+ V  R+VV+DL +   R  P VFINP+I   +D+   YQEGCLS+P +  +V R   
Sbjct: 1   TQVNVHKRVVVMDLSED--RSEPRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQK 58

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + V+ +D + +   + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 59  VRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 117


>gi|150020729|ref|YP_001306083.1| peptide deformylase [Thermosipho melanesiensis BI429]
 gi|149793250|gb|ABR30698.1| peptide deformylase [Thermosipho melanesiensis BI429]
          Length = 165

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 98/162 (60%), Gaps = 6/162 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           ++ DPILR+ ++ ++     +  + ++ML+ MY  DG+GLAA Q+G+  R  V+D     
Sbjct: 5   LYGDPILRKSAKAVKDFKY-LQEIKEDMLKTMYLEDGVGLAAPQVGLSLRFFVMD----- 58

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               P+  +NP+II  S++  + +EGCLS+P    +V+R  ++ +++ D   + Q    +
Sbjct: 59  DGSGPLFIVNPEIIAHSEEKEIGEEGCLSLPGIFENVERYKWVKLKFQDEYGKVQTRLFE 118

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           G  A  +QHE DHL+GILFIDHL    +  +  ++SK++++R
Sbjct: 119 GYSARIVQHERDHLDGILFIDHLPNAVKRRLAPELSKIMRMR 160


>gi|206901011|ref|YP_002251154.1| peptide deformylase [Dictyoglomus thermophilum H-6-12]
 gi|238058219|sp|B5YF46|DEF_DICT6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|206740114|gb|ACI19172.1| peptide deformylase [Dictyoglomus thermophilum H-6-12]
          Length = 153

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 86/139 (61%), Gaps = 6/139 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPIL+  ++ +EKI+  +  L  +M+E M   +G+GLAA Q+G   R++V+D +D     
Sbjct: 10  DPILKTKAKKVEKIDEKVKELARDMIETMKFCNGVGLAAPQVGESLRIIVVDYED----- 64

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           NP+V INP+II  S +   Y EGCLS+P     VKR+  I  +  D + + +   A GLL
Sbjct: 65  NPIVLINPEIIEMSGEELDY-EGCLSVPGVEVPVKRAERIVFKAQDLDGRTKKYRAKGLL 123

Query: 131 ATCLQHELDHLNGILFIDH 149
           A  +QHE+DHL+G+L +D 
Sbjct: 124 ARVVQHEVDHLDGMLILDR 142


>gi|313672170|ref|YP_004050281.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938926|gb|ADR18118.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 168

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 103/168 (61%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M  + ++ +P+P L+ +S  + KI+  + ++I ++ + M  +   +G+AA QIG L R++
Sbjct: 1   MAIREVLTYPNPKLKEISEEVLKIDDYVRSVITDLKDTMEDAGHSVGIAAPQIGELIRVI 60

Query: 60  VIDLQDHAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           V+D   +   K    P V INP+II + +  + ++EGC+S+PDY  +V R+  I V+++D
Sbjct: 61  VVDPSKNPKCKEHHGPNVMINPEIIKW-EGLTQFREGCMSVPDYTGNVTRAEKILVQFLD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            N + ++   +G  A  +QHE+DHL+G+LFID +   + D+  +K  K
Sbjct: 120 ENGEQKVFETEGFEAILIQHEIDHLDGVLFIDRIISKRTDLFKRKNYK 167


>gi|332976422|gb|EGK13270.1| peptide deformylase [Desmospora sp. 8437]
          Length = 156

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 7/154 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+ PDPIL+  +RP+ K N  +  L+D+M + MY   G+GLAA Q+G+  R++V
Sbjct: 1   MAIRKIVLVPDPILKEKARPVTKFNERLHKLLDDMADTMYDAPGVGLAAPQVGISKRVIV 60

Query: 61  IDLQDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D        N ++  +NP++     +     EGCLSIP    +V+R+  + ++  D   
Sbjct: 61  VD------DGNGLIEAVNPELFDKEGEQLAPPEGCLSIPGLLGEVRRAEKVRLKARDRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           Q   + A+G LA  LQHE+DHLNGILF D   R+
Sbjct: 115 QFFELEAEGYLARILQHEVDHLNGILFTDIADRV 148


>gi|84685502|ref|ZP_01013400.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666659|gb|EAQ13131.1| peptide deformylase [Rhodobacterales bacterium HTCC2654]
          Length = 158

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           ++PD  LR  ++P+E +  ++  + D M   M +  G+GLAAVQ+G++ RL V+D  +  
Sbjct: 1   MWPDKRLRTAAQPVEAVTDEVRAIWDEMTLAMDAMPGVGLAAVQLGIMQRLAVVDASE-- 58

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R   +   NP+++  S     + E   ++P   A + R   +TVR+MD     +     
Sbjct: 59  ERGKAVRMANPEVLHESVKLREHDEASPNLPGVWATISRPRAVTVRFMDETGAVREQDFV 118

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           GL AT +QH++DHLNG ++ DHLS+LKRD +  K  K
Sbjct: 119 GLWATSVQHQIDHLNGKMYFDHLSKLKRDRLIAKARK 155


>gi|167037732|ref|YP_001665310.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256752269|ref|ZP_05493132.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116147|ref|YP_004186306.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|238687663|sp|B0KA11|DEF_THEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166856566|gb|ABY94974.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256748837|gb|EEU61878.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929238|gb|ADV79923.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 159

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 92/143 (64%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++P+ +INS I+ ++++M + MY  DG+GLAA QIGVL RLVVID+ +     
Sbjct: 11  DEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVVIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+ + +   V  EGCLSIP    +VKR   + V+Y+D   + + I  + LL
Sbjct: 66  GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGKEREIEGEDLL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  L HE+DHLNG+LFID   R 
Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147


>gi|148977715|ref|ZP_01814276.1| peptide deformylase [Vibrionales bacterium SWAT-3]
 gi|145963083|gb|EDK28352.1| peptide deformylase [Vibrionales bacterium SWAT-3]
          Length = 170

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 102/166 (61%), Gaps = 5/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  +P++  PD  LR   + ++ +++ +  LID+ML+ +Y TD GIGLAA Q+G    ++
Sbjct: 1   MAIRPIIEVPDDRLRVTYQIVDDVST-VQTLIDDMLDTLYDTDNGIGLAAAQVGHSEAVL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +ID+ ++  R  P++ INP+II   +     +EGCLS+P   A V+R   + V+ ++   
Sbjct: 60  IIDISEN--RDQPLIMINPQIIEH-EGLIDSEEGCLSVPGVYAKVQRHQRVKVQALNRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +   I  D  LA  +QHE+DHL+G +FID+LS LKR M  KK+ K 
Sbjct: 117 EAFTIEDDDYLAIVMQHEIDHLHGKIFIDYLSPLKRKMAMKKIKKF 162


>gi|302872125|ref|YP_003840761.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574984|gb|ADL42775.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47]
          Length = 166

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I+ D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIKIYEDEILRKRSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+ I +S+   V  EGCLS+P+   +V+R   + V   D    
Sbjct: 61  IDIGEGA-----IELVNPQ-IEYSEGSVVDVEGCLSVPNVWGEVERPQKVVVNAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164
              + A+GLLA  + HE+DHL+GILF+D + R +  + I ++ S+
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSR 159


>gi|254510887|ref|ZP_05122954.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
 gi|221534598|gb|EEE37586.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
          Length = 164

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 6/158 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR  +  + +I  DI  + D+M++ M +  G+GLAA QIGV+ RL V+D      
Sbjct: 9   WPDKRLRTKAGDVTEITDDIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAVVD--GSTE 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127
           R   +   NP+I+  S +   ++E   ++P   A VKR   +TV+++  N Q QI + D 
Sbjct: 67  RGKAVRLANPEILHSSVELREHEEASPNLPGVSAKVKRPRAVTVKFL--NEQGQIDHRDF 124

Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  K
Sbjct: 125 VGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKK 162


>gi|62317677|ref|YP_223530.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941]
 gi|62197870|gb|AAX76169.1| Def-1, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941]
          Length = 164

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  +G+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHVGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRAA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162


>gi|118475317|ref|YP_892810.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414543|gb|ABK82963.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40]
          Length = 172

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 95/153 (62%), Gaps = 4/153 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           ++ +PD  L   S  + K ++++   +D+M + M + +GIGLAA+Q+G   R+ +I+L  
Sbjct: 5   VITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFIINLIN 64

Query: 64  QDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +D    KN ++  INPK I+  D   VYQEGCLS+P Y  DVKR+  I +++ D     +
Sbjct: 65  EDEVQDKNDLLEIINPKFIS-KDGEIVYQEGCLSVPGYYEDVKRAKDIKIQFQDRFGNLK 123

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            + ADGLL+  +QHE DHL+G LFI+ +   KR
Sbjct: 124 ELEADGLLSVAIQHENDHLDGHLFIEKIGFNKR 156


>gi|257464084|ref|ZP_05628468.1| polypeptide deformylase [Fusobacterium sp. D12]
 gi|317061604|ref|ZP_07926089.1| polypeptide deformylase [Fusobacterium sp. D12]
 gi|313687280|gb|EFS24115.1| polypeptide deformylase [Fusobacterium sp. D12]
          Length = 173

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+++  +E++N +I  ++ NM+E MY+ DG+GLAA Q+G+  R+ V D+     
Sbjct: 8   YGDSVLRKIAEKVEEVNDEIREILRNMVETMYARDGVGLAAPQVGISLRMFVCDI-GTPE 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
             N    INP I   +++    +EGCLSIP     V+R A + + Y +   +      +G
Sbjct: 67  ESNVKKIINPLITPLTEETISVEEGCLSIPGIYKKVERIAKLKLEYQNEQGEFVEEILEG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             A  +QHE DHL   LF+D +S + + MI KK+  L
Sbjct: 127 FPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQAL 163


>gi|163744871|ref|ZP_02152231.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45]
 gi|161381689|gb|EDQ06098.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45]
          Length = 165

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 83/155 (53%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +PDP L  +  PIE+I  +I  L  +MLE MY+  G GLA  Q+G + RL V
Sbjct: 1   MSMREVLRWPDPRLAEICAPIEEITPEIEQLAADMLETMYAAPGRGLAGPQVGAMLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     ++ +P+V INP      ++     EGCLSIP    D+ R + + + +   N  
Sbjct: 61  MDAGWKENKSDPLVCINPMFQEIGEERVTNTEGCLSIPGISTDISRPSQVQMVWTGLNGG 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +   +G  A   QHE+DHL+G++  DHL    R
Sbjct: 121 RYVQSFEGAAALIAQHEMDHLDGVVTFDHLDAETR 155


>gi|17985009|gb|AAL54054.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M]
          Length = 203

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 40  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 99

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 100 LELDRAA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 156

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL
Sbjct: 157 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 201


>gi|187778895|ref|ZP_02995368.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC
           15579]
 gi|187772520|gb|EDU36322.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC
           15579]
          Length = 147

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 91/142 (64%), Gaps = 6/142 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+ SR IEKI+  I+ L+++M E MYS +G+GLAA Q+G+L R+VVID+ +   
Sbjct: 9   YGDELLRKKSRKIEKIDDRILTLLEDMAETMYSAEGVGLAAPQVGILKRVVVIDVGE--- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +  INP+II  ++      EGCLS+P  + +V+R   + V+ ++   +  ++  + 
Sbjct: 66  --GLIKLINPEIIE-TEGSQKDVEGCLSVPGEQGEVERPYKVKVKALNEKGEQIVLEGEE 122

Query: 129 LLATCLQHELDHLNGILFIDHL 150
           LLA    HE+DHL+G+LF+D +
Sbjct: 123 LLARAFCHEIDHLDGVLFVDKV 144


>gi|298247409|ref|ZP_06971214.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
 gi|297550068|gb|EFH83934.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
          Length = 172

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 94/152 (61%), Gaps = 3/152 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+  DPILR+ ++ I + ++ +  L+ +M E M++ DG GLAA QIG+  RL V
Sbjct: 1   MSLRNIVMLGDPILRQKAKRIHRFDASLRKLVKDMFETMHANDGAGLAAPQIGLSLRLFV 60

Query: 61  IDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDCN 118
           ++L+D    K+  +   NP+II  ++      +GCLSIP Y   +V+R+  + V+  D N
Sbjct: 61  VELEDPETEKHYKVAMANPEIIK-TEGEQTGLDGCLSIPGYYGVNVRRANKVIVKGQDLN 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +   + A+G  A  LQHE+DHLNG+LFID L
Sbjct: 120 GKPMKVMAEGYYAWALQHEIDHLNGVLFIDLL 151


>gi|237817222|ref|ZP_04596214.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|297249721|ref|ZP_06933422.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|237788035|gb|EEP62251.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|297173590|gb|EFH32954.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|326410617|gb|ADZ67681.1| peptide deformylase [Brucella melitensis M28]
 gi|326553909|gb|ADZ88548.1| peptide deformylase [Brucella melitensis M5-90]
          Length = 214

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 51  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 111 LELDRAA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL
Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 212


>gi|326511653|dbj|BAJ91971.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 270

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 83/146 (56%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDP+LR  ++ I   ++++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 81  VVQYPDPVLRARNKRINTFDNNLRSLADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 140

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP +  FS   SVY+EGCLS P   A+V R   + +   D +     + 
Sbjct: 141 VKGEGEEIVLVNPVVYKFSKRLSVYEEGCLSFPGIYANVLRPDTVKIDAQDASGAKIKVK 200

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
              L A   QHE DHL GILF D ++
Sbjct: 201 LSELSARVFQHEFDHLQGILFFDRMT 226


>gi|163853348|ref|YP_001641391.1| peptide deformylase [Methylobacterium extorquens PA1]
 gi|163664953|gb|ABY32320.1| formylmethionine deformylase [Methylobacterium extorquens PA1]
          Length = 176

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 10/168 (5%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMN-----LIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +PL+ +PD  L R + P+      +       L  ++L+ + +   +GL A+ IG   R+
Sbjct: 4   RPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRPERV 63

Query: 59  VVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           VVI LQ D  H     V+++P +   S + + + EG +S+P     V+R A + VRY D 
Sbjct: 64  VVIRLQPDEPH----AVYVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRYRDL 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +       A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL
Sbjct: 120 DGAEHEEKAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167


>gi|126728526|ref|ZP_01744342.1| peptide deformylase [Sagittula stellata E-37]
 gi|126711491|gb|EBA10541.1| peptide deformylase [Sagittula stellata E-37]
          Length = 163

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P V +PD  LR  +  ++ I  +I  +  +M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTVRPFVPWPDKRLRAAAAQVDAITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R   +   NP+I+  S     ++EG  ++P   A + R   +TV Y+D    
Sbjct: 61  VDASD--ARGQAVRMANPEILHASVQLRDHEEGSPNLPGVWAKIARPRAVTVAYIDETGL 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  GL AT +QH++DHLNG ++ D LS++KRDM+ +K  K+
Sbjct: 119 RVERDFVGLWATSVQHQVDHLNGRMYFDRLSKVKRDMLIRKARKM 163


>gi|294853733|ref|ZP_06794405.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
 gi|294819388|gb|EFG36388.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
          Length = 184

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 21  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMCAAPGIGITAPHIGISKRVVV 80

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 81  LELDRAA---GPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL
Sbjct: 138 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 182


>gi|256958401|ref|ZP_05562572.1| formylmethionine deformylase [Enterococcus faecalis DS5]
 gi|256960470|ref|ZP_05564641.1| formylmethionine deformylase [Enterococcus faecalis Merz96]
 gi|256962963|ref|ZP_05567134.1| formylmethionine deformylase [Enterococcus faecalis HIP11704]
 gi|257080477|ref|ZP_05574838.1| formylmethionine deformylase [Enterococcus faecalis E1Sol]
 gi|257083202|ref|ZP_05577563.1| formylmethionine deformylase [Enterococcus faecalis Fly1]
 gi|257088235|ref|ZP_05582596.1| formylmethionine deformylase [Enterococcus faecalis D6]
 gi|257091366|ref|ZP_05585727.1| formylmethionine deformylase [Enterococcus faecalis CH188]
 gi|257417251|ref|ZP_05594245.1| formylmethionine deformylase [Enterococcus faecalis AR01/DG]
 gi|257417968|ref|ZP_05594962.1| formylmethionine deformylase [Enterococcus faecalis T11]
 gi|256948897|gb|EEU65529.1| formylmethionine deformylase [Enterococcus faecalis DS5]
 gi|256950966|gb|EEU67598.1| formylmethionine deformylase [Enterococcus faecalis Merz96]
 gi|256953459|gb|EEU70091.1| formylmethionine deformylase [Enterococcus faecalis HIP11704]
 gi|256988507|gb|EEU75809.1| formylmethionine deformylase [Enterococcus faecalis E1Sol]
 gi|256991232|gb|EEU78534.1| formylmethionine deformylase [Enterococcus faecalis Fly1]
 gi|256996265|gb|EEU83567.1| formylmethionine deformylase [Enterococcus faecalis D6]
 gi|257000178|gb|EEU86698.1| formylmethionine deformylase [Enterococcus faecalis CH188]
 gi|257159079|gb|EEU89039.1| formylmethionine deformylase [Enterococcus faecalis ARO1/DG]
 gi|257159796|gb|EEU89756.1| formylmethionine deformylase [Enterococcus faecalis T11]
          Length = 169

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ V
Sbjct: 5   LMRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I++ + + R      INP II      S+  EGCLSIP+    V+R+  +TVRY D   +
Sbjct: 65  IEIDEESGR---FELINPVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A G LA   QHE+DHLNG LFID +
Sbjct: 121 EMEVTAYGYLARAFQHEIDHLNGELFIDKM 150


>gi|304404142|ref|ZP_07385804.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
 gi|304347120|gb|EFM12952.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
          Length = 165

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 3/143 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  PDP+LR V++ + K   ++  L+++M + MY  +G+GLAA QIG+  R++V+D+ +
Sbjct: 6   IVKEPDPVLREVAKEVTKFTPNLHKLLNDMADTMYDAEGVGLAAPQIGISKRVIVVDIGE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  +NP +I  S+      EGCLSIP+   DV R+  + V   D N     + 
Sbjct: 66  E--ESGLIEVVNP-VIVLSEGEQFGPEGCLSIPNLNGDVSRADRVKVAGQDRNGNPIEVD 122

Query: 126 ADGLLATCLQHELDHLNGILFID 148
           A G LA   QHE+DHLNGILF D
Sbjct: 123 ASGFLARAFQHEIDHLNGILFTD 145


>gi|187736350|ref|YP_001878462.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426402|gb|ACD05681.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
          Length = 182

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 16/173 (9%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + +P+L+   RP+E  +  +  L +NMLE MY+ +GIGLAA Q+ +  +LVVID+     
Sbjct: 8   YGNPVLKEKCRPVEHFDDSLKTLAENMLETMYAAEGIGLAAPQVSIPIQLVVIDIPKEEE 67

Query: 69  RKN---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                             P++F NP +  +      + EGCLS+   RA V R  F+   
Sbjct: 68  SVTWLKVNGEDKELSDIMPLMFANPVLEPYGP-MHPFHEGCLSVMKIRASVVRPDFVKAT 126

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            +  + +   I  +GLLA CLQHE DHLNGILF++ +S  ++  +  K+ +L 
Sbjct: 127 VLLIDGREITIDCNGLLARCLQHECDHLNGILFVERVSSAQKITLRNKLKRLA 179


>gi|239835143|ref|ZP_04683470.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
 gi|239821282|gb|EEQ92852.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
          Length = 165

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 89/147 (60%), Gaps = 4/147 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V +PD  LR V+ P+   +S +  L  ++L+ M +  GIG+ A  IG+  RLVV
Sbjct: 1   MTVRPIVSYPDKRLRAVADPVTLFDSALQELGTDLLDTMRAAPGIGITAPHIGIAMRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L +      P  ++NP+I+  S++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELPE----AGPKFYVNPQILWASEEKIHHQEGSVSMPGVVDEVERHARIKIRYQDLDGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
            Q   ++GLLA C QHE+D L+GI +I
Sbjct: 117 EQTEESEGLLAVCHQHEIDQLDGIFWI 143


>gi|315453778|ref|YP_004074048.1| polypeptide deformylase [Helicobacter felis ATCC 49179]
 gi|315132830|emb|CBY83458.1| polypeptide deformylase [Helicobacter felis ATCC 49179]
          Length = 173

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 96/149 (64%), Gaps = 5/149 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----Q 64
           +P   LR  S  +   ++ +   +++M E M +  GIGLAA+Q+GV  R+++I+L     
Sbjct: 9   YPHKKLRTRSSEVRVFDAQLHAFLEDMHETMLARKGIGLAAIQVGVPKRILIINLPREED 68

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +  H ++ +  INP +IT ++   +++EGCLS+P++  +++R A +T+ Y D + + +++
Sbjct: 69  ETQHPEDRLEIINP-VITHTEGSILWREGCLSVPEFYEEIERHANLTLAYQDRHGESKML 127

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153
            A  LL+  +QHE+DHLNGILF+D LS L
Sbjct: 128 QASELLSVAIQHEMDHLNGILFVDKLSML 156


>gi|126463293|ref|YP_001044407.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104957|gb|ABN77635.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 163

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 1/159 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP L +   P E     +  L  +ML  MY  +G GLAA Q+G + RL V+D  
Sbjct: 5   PILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFVMDTL 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P VF+NP+I+  ++     +EGCLSIP  R  V R+  I +R+       Q  
Sbjct: 64  WKEAPAAPQVFVNPQILWMAEARVEGREGCLSIPGARPLVARAPEIRLRWTSLFGAEQEA 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 124 LLTGIDAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|237755423|ref|ZP_04584049.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692423|gb|EEP61405.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 177

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 8/164 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           I+PDPIL+  ++ ++  +  +   I+ M E MY  +G+GLAA QIG+ Y+++VID     
Sbjct: 7   IWPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTSLRE 66

Query: 68  HRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +R          MV INPKI+    +     EGCLS P  +  + R+  + V   +   +
Sbjct: 67  NRSEEETEPPVKMVLINPKIVEKEGEVQS-TEGCLSFPGVQITIPRAKRVKVVGKNEKGE 125

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I +   LA  LQHE+DHLNGI FI++LS LKR ++  K  K
Sbjct: 126 DVEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLK 169


>gi|320537113|ref|ZP_08037086.1| peptide deformylase [Treponema phagedenis F0421]
 gi|320146038|gb|EFW37681.1| peptide deformylase [Treponema phagedenis F0421]
          Length = 167

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 85/146 (58%), Gaps = 6/146 (4%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR+ S P+E I  +I +L+  M   M   DGIGLAA QIG   R+ V  + +        
Sbjct: 11  LRQKSIPVENITEEIKDLVQKMFVTMKIKDGIGLAAPQIGKNIRIFVTGVNNEQR----- 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           VFINP+II  S+    Y+EGCLSIP     V R   +TV+Y + + + + +   GLLA  
Sbjct: 66  VFINPQIIETSEKVCSYEEGCLSIPQIYEKVVRPETVTVQYQNIDGRRKTLQTTGLLARV 125

Query: 134 LQHELDHLNGILFIDHL-SRLKRDMI 158
           +QHE DHL+G+LFID +  +L+ + I
Sbjct: 126 IQHENDHLDGVLFIDRIDEKLREEAI 151


>gi|256394328|ref|YP_003115892.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
 gi|256360554|gb|ACU74051.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
          Length = 213

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 9/174 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ I  DP+L R   P+E+ +  +  L+ +M   MY+ +G+GLAA QIGV  R+ V 
Sbjct: 8   TARPITIVGDPVLHRPCAPVEEFDDRLAGLVADMFASMYAAEGVGLAANQIGVPLRVFVY 67

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D QD        H  NP++   P      DD +   EGCLS+P    ++ R  +  V  +
Sbjct: 68  DCQDDDGVEHVGHVVNPVLAEQPPDRRQLDDSA---EGCLSVPGPHHELARPDYARVTGV 124

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D + +   +   G  A CLQHE DHL G L+ID LS+ +R  +  +M ++ + +
Sbjct: 125 DLHGEPITVEGTGYFARCLQHEFDHLEGRLYIDRLSKRQRKNVLAEMERMQEEK 178


>gi|160945220|ref|ZP_02092446.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442951|gb|EDP19956.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105555|emb|CBL03099.1| peptide deformylase [Faecalibacterium prausnitzii SL3/3]
          Length = 178

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G++ RL V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMMRRLFV 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P       + F+NP+I+  S++     EGCLS P +   V R   + VR
Sbjct: 61  VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPVAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             D N +   + ADGLL  C+QHE DHL+GI  ++       D    K +
Sbjct: 121 AQDRNGEWFELEADGLLGRCIQHENDHLDGITIMESSEYFYEDTEEGKKA 170


>gi|303237149|ref|ZP_07323719.1| peptide deformylase [Prevotella disiens FB035-09AN]
 gi|302482536|gb|EFL45561.1| peptide deformylase [Prevotella disiens FB035-09AN]
          Length = 187

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 93/176 (52%), Gaps = 16/176 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+     P+LR+V+  I     ++  LI +M E   ++DGIGLAA QIG   RLVVIDL 
Sbjct: 4   PIYTLGQPVLRKVAEDIPLDYPNLQQLIADMFETCSASDGIGLAAPQIGKSIRLVVIDLD 63

Query: 64  ---------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113
                    +D  H      FIN  I+   D +    +EGCLS+P    +V R   I V+
Sbjct: 64  VISESFPEYKDFKH-----AFINGHILETDDSETETMEEGCLSLPGIHENVTRPKRIHVK 118

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Y+D N +    + DG LA  +QHE DH+ G +F D +S  ++ +I KKM  L Q R
Sbjct: 119 YVDENLEEHDEWIDGYLARVIQHEFDHIEGKVFTDRISPFRKQIIAKKMKALSQGR 174


>gi|295100691|emb|CBK98236.1| peptide deformylase [Faecalibacterium prausnitzii L2-6]
          Length = 178

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G+L R+ V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRVFV 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P       + F+NP+I+  S+D     EGCLS P +   V R   + VR
Sbjct: 61  VWDTTDAPEEIPENYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             D N +   + A+GLLA C+QHE DHL+GI  ++
Sbjct: 121 AQDRNGEWFELEAEGLLARCIQHENDHLDGITIME 155


>gi|69245426|ref|ZP_00603421.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257879837|ref|ZP_05659490.1| formylmethionine deformylase [Enterococcus faecium 1,230,933]
 gi|257882563|ref|ZP_05662216.1| formylmethionine deformylase [Enterococcus faecium 1,231,502]
 gi|257886039|ref|ZP_05665692.1| formylmethionine deformylase [Enterococcus faecium 1,231,501]
 gi|257891678|ref|ZP_05671331.1| formylmethionine deformylase [Enterococcus faecium 1,231,410]
 gi|257894153|ref|ZP_05673806.1| formylmethionine deformylase [Enterococcus faecium 1,231,408]
 gi|258614263|ref|ZP_05712033.1| peptide deformylase [Enterococcus faecium DO]
 gi|260559510|ref|ZP_05831691.1| formylmethionine deformylase [Enterococcus faecium C68]
 gi|261206661|ref|ZP_05921359.1| formylmethionine deformylase [Enterococcus faecium TC 6]
 gi|289565022|ref|ZP_06445476.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|293553674|ref|ZP_06674298.1| peptide deformylase [Enterococcus faecium E1039]
 gi|293563684|ref|ZP_06678125.1| peptide deformylase [Enterococcus faecium E1162]
 gi|293570096|ref|ZP_06681176.1| peptide deformylase [Enterococcus faecium E1071]
 gi|294614918|ref|ZP_06694809.1| peptide deformylase [Enterococcus faecium E1636]
 gi|294618610|ref|ZP_06698149.1| peptide deformylase [Enterococcus faecium E1679]
 gi|294623686|ref|ZP_06702519.1| peptide deformylase [Enterococcus faecium U0317]
 gi|314938232|ref|ZP_07845532.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|314943129|ref|ZP_07849927.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|314949326|ref|ZP_07852668.1| peptide deformylase [Enterococcus faecium TX0082]
 gi|314952260|ref|ZP_07855274.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|314992116|ref|ZP_07857566.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|314996298|ref|ZP_07861354.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|68195808|gb|EAN10244.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257814065|gb|EEV42823.1| formylmethionine deformylase [Enterococcus faecium 1,230,933]
 gi|257818221|gb|EEV45549.1| formylmethionine deformylase [Enterococcus faecium 1,231,502]
 gi|257821895|gb|EEV49025.1| formylmethionine deformylase [Enterococcus faecium 1,231,501]
 gi|257828038|gb|EEV54664.1| formylmethionine deformylase [Enterococcus faecium 1,231,410]
 gi|257830532|gb|EEV57139.1| formylmethionine deformylase [Enterococcus faecium 1,231,408]
 gi|260074609|gb|EEW62930.1| formylmethionine deformylase [Enterococcus faecium C68]
 gi|260079154|gb|EEW66847.1| formylmethionine deformylase [Enterococcus faecium TC 6]
 gi|289163229|gb|EFD11075.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|291587468|gb|EFF19352.1| peptide deformylase [Enterococcus faecium E1071]
 gi|291592204|gb|EFF23822.1| peptide deformylase [Enterococcus faecium E1636]
 gi|291595129|gb|EFF26467.1| peptide deformylase [Enterococcus faecium E1679]
 gi|291596901|gb|EFF28119.1| peptide deformylase [Enterococcus faecium U0317]
 gi|291602249|gb|EFF32477.1| peptide deformylase [Enterococcus faecium E1039]
 gi|291604368|gb|EFF33861.1| peptide deformylase [Enterococcus faecium E1162]
 gi|313589542|gb|EFR68387.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|313593330|gb|EFR72175.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|313595602|gb|EFR74447.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|313598137|gb|EFR76982.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|313642428|gb|EFS07008.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|313644275|gb|EFS08855.1| peptide deformylase [Enterococcus faecium TX0082]
          Length = 163

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+R ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ VI
Sbjct: 1   MRYPILIHPNDKLKRTAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +          INP+II    + S+  EGCLSIP     VKR+  +TVRY D + + 
Sbjct: 61  EVDE----GEKFELINPEIIEAKGE-SLDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|296270495|ref|YP_003653127.1| peptide deformylase [Thermobispora bispora DSM 43833]
 gi|296093282|gb|ADG89234.1| peptide deformylase [Thermobispora bispora DSM 43833]
          Length = 162

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 89/154 (57%), Gaps = 11/154 (7%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR  + P+ + + ++  LID M +VMY+ DG+GLA  QIGV  R+ V D+    +RK
Sbjct: 9   DPVLRTPAEPVTEFDRELRRLIDEMFQVMYAADGVGLAGPQIGVGKRVFVYDI---VNRK 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYR------ADVKRSAFITVRYMDCNAQHQII 124
             +V  NP++     +  V +EGCLS+P         A   R+A +T+R  D   +   +
Sbjct: 66  GHVV--NPELTIDDPEQIVAEEGCLSVPSKETGKPLYAPTPRAAGVTLRGFDRLGRPITV 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            A G+LA C QHE DHLNG L++D L + +R  I
Sbjct: 124 KARGMLARCFQHEFDHLNGTLYVDRLPKEERRRI 157


>gi|283458224|ref|YP_003362842.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
 gi|283134257|dbj|BAI65022.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
          Length = 248

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 9/169 (5%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+VI  +P+L R + P+ + N ++  L+ +M E M +++G+GLAA QIGV  R+    +
Sbjct: 62  RPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTYKM 121

Query: 64  QDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++          INP     KI T   D    +EGCLS P Y   +KR+ ++TV  +D +
Sbjct: 122 ENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLDEH 181

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  A G  A C+QHE DHL+G L+++ L++      T KM K+V+
Sbjct: 182 GNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 226


>gi|332559343|ref|ZP_08413665.1| peptide deformylase [Rhodobacter sphaeroides WS8N]
 gi|332277055|gb|EGJ22370.1| peptide deformylase [Rhodobacter sphaeroides WS8N]
          Length = 167

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+D 
Sbjct: 3   RPFVMYPDKRLKTVAAPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVVDC 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +   R   +   NP+I+  S  F  ++EG  ++P   A + R   +TV +++   + + 
Sbjct: 63  SE--SRGKAIRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVHFLNEAGETEE 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                + AT +QH++DHL+G L+ID LS LKR M+  K  K ++
Sbjct: 121 RDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|326203181|ref|ZP_08193047.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
 gi|325986827|gb|EGD47657.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
          Length = 159

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 92/154 (59%), Gaps = 6/154 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           + +LR++SRP+E I+  I++L+++M + MY  DG+GLAA QIGVL R+VVID+ D  +  
Sbjct: 11  EEVLRKISRPVENIDKKILSLLEDMADTMYRADGVGLAAPQIGVLKRMVVIDVGDGLYE- 69

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                INP I+  S +     EGCLSI      VKR   +T++Y D N +   I A    
Sbjct: 70  ----MINPVILEQSGEQDGI-EGCLSILGVLGKVKRPMNVTLKYTDRNGEDITIEASEFF 124

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A  + HELDHL+GIL+ D   ++  +   ++M K
Sbjct: 125 ARAICHELDHLDGILYKDKAYKMYTEKEFEEMQK 158


>gi|222086074|ref|YP_002544606.1| peptide deformylase [Agrobacterium radiobacter K84]
 gi|221723522|gb|ACM26678.1| peptide deformylase [Agrobacterium radiobacter K84]
          Length = 164

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPDP+L+    P+   +  + +L  ++++ M +  G+G+ A  IGVL R+ V
Sbjct: 1   MSVRSIIRFPDPLLKTTCAPVTIFDDGLHSLAIDLVDTMRAAPGVGITAAHIGVLRRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+L   +       +INP+I  FS++   + EG +S+P    +V R   I  RY D + +
Sbjct: 61  IEL---SREDGIRTYINPEITWFSEETMRHMEGSVSMPGITDEVVRPRAIRFRYQDIDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+G+ ++  LS+LKRD + KK  K
Sbjct: 118 AHEAAAEDFLAICIQHEVDQLDGLFWLQRLSKLKRDRLVKKWEK 161


>gi|86131930|ref|ZP_01050527.1| peptide deformylase [Dokdonia donghaensis MED134]
 gi|85817752|gb|EAQ38926.1| peptide deformylase [Dokdonia donghaensis MED134]
          Length = 196

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 12/175 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +  P+L++ ++ I     ++  L++NM E MY   G+GLAA Q+G+  R+ ++D  
Sbjct: 4   PIVAYGSPVLKKKAKDITPEYPNLSELLENMYETMYGAHGVGLAAPQVGLPIRIFLVDTT 63

Query: 65  DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A  ++               FIN +I+    +   + EGCLSIP    DV R   +T+
Sbjct: 64  PFADDESFTPEEQKQLSSFKKTFINAEILEEEGEEWAFSEGCLSIPGINEDVFRKPTVTI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +Y D N +      +GL+A  +QHE DH++GILF D LS LK+ +I  K++ + +
Sbjct: 124 KYQDENFKEHTETYEGLIARVIQHEYDHIDGILFTDKLSSLKKRLIKGKLANISK 178


>gi|54025579|ref|YP_119821.1| peptide deformylase [Nocardia farcinica IFM 10152]
 gi|54017087|dbj|BAD58457.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
          Length = 185

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DPILR  +  + + + ++  L+ ++ + M+   G+G+AA QIGV  R+ V
Sbjct: 1   MTIQPVRLFGDPILRARASEVTEFDRELRQLVTDLTDTMHDDGGVGMAAPQIGVGLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D A        +NP      D+  V  EGCLSIP  R D +R+  + VR +D +  
Sbjct: 61  YDTGDAAGH-----LVNPTYTVVGDEEQVGPEGCLSIPGLRYDTRRALRVHVRGVDMHGA 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                AD LLA C+QHE DHL+G+LFID L    R
Sbjct: 116 PVEFDADELLARCVQHETDHLDGVLFIDRLDPAAR 150


>gi|255326017|ref|ZP_05367105.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
 gi|255296908|gb|EET76237.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
          Length = 228

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 9/169 (5%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+VI  +P+L R + P+ + N ++  L+ +M E M +++G+GLAA QIGV  R+    +
Sbjct: 42  RPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTYKM 101

Query: 64  QDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++          INP     KI T   D    +EGCLS P Y   +KR+ ++TV  +D +
Sbjct: 102 ENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLDEH 161

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  A G  A C+QHE DHL+G L+++ L++      T KM K+V+
Sbjct: 162 GNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 206


>gi|300726436|ref|ZP_07059884.1| peptide deformylase [Prevotella bryantii B14]
 gi|299776284|gb|EFI72846.1| peptide deformylase [Prevotella bryantii B14]
          Length = 185

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 99/172 (57%), Gaps = 12/172 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI +M + + +++G+GLAA QIG   RLVVIDL 
Sbjct: 4   PIYVYGQPVLRKVASDITPDYPELKQLIQDMFQTLDNSNGVGLAAPQIGKAIRLVVIDLD 63

Query: 64  -------QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                  +    RK   VFIN  I+ + D   S  +EGCLSIP    +V R   I V+YM
Sbjct: 64  ILKDEFPEYEGFRK---VFINAHILEYDDTQESRMEEGCLSIPGLSENVVRPTRIHVKYM 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D N      + +G  A  +QHE DHL GI+++D ++ L+++MI  K+  +++
Sbjct: 121 DENFVEHDEWVEGYKARVMQHEFDHLEGIMYVDKVNALRKNMIGGKLKNIMK 172


>gi|163738220|ref|ZP_02145636.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
 gi|161388836|gb|EDQ13189.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
          Length = 169

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 3/152 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L   ++PI     ++  L  +MLE MY+  G GLAA Q+GVL RL V
Sbjct: 1   MAVLPIRAWPDPVLSTPAKPI-ATPGNVETLARDMLETMYAAPGRGLAAPQVGVLIRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA- 119
           +D       ++P+V +NP I+  S + +   EGCLSI     +V R A++ + + D +  
Sbjct: 60  MDTTWKEGTRDPLVCVNPDIVALSVEMATMSEGCLSIKGVSLEVTRPAWVDLAWSDLHGV 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +HQ  + +G  A C+QHE DHL G +  D +S
Sbjct: 120 RHQRRF-EGFAAACVQHEYDHLEGRVTFDRVS 150


>gi|134299560|ref|YP_001113056.1| peptide deformylase [Desulfotomaculum reducens MI-1]
 gi|134052260|gb|ABO50231.1| peptide deformylase [Desulfotomaculum reducens MI-1]
          Length = 152

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 5/150 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V   D ILR  ++P++++  +I  L+DNM + MY  +G+GLAA QIGV  R++V+D+ +
Sbjct: 6   IVEIGDEILREKAKPVKEVTPNIHKLLDNMADTMYEANGVGLAAPQIGVSKRVIVVDIGE 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +  INP+I+  S       EGCLS+P+   +V R+  + V+ ++   +  +  
Sbjct: 66  -----GLIELINPEIVEVSGHTVTDTEGCLSVPNMIGEVSRADKLVVKGLNRKGEEVLYR 120

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           A   LA   QHE+DHL GI+F+D  S L++
Sbjct: 121 AKDFLARAFQHEIDHLEGIIFVDKASNLRK 150


>gi|291288165|ref|YP_003504981.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885325|gb|ADD69025.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 167

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 100/171 (58%), Gaps = 11/171 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++++PD  L+ ++  +EK++      + +LID M E  +ST   G+AA QIG   
Sbjct: 1   MAVREVLVYPDTRLKEMAEDVEKLDDHAKQVVRDLIDTMEESGHST---GIAATQIGEKL 57

Query: 57  RLVVIDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           R+VV D   +   +N    +V INP+I+ +      ++EGC+S+PDY  +V R+  I ++
Sbjct: 58  RIVVADASKNKKCENNHGRLVLINPEILKWEGMLQ-FREGCMSVPDYTGNVNRARKILIK 116

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Y D N + ++I A+G  A  LQHE DHL+G LFID +   + D+  +K  K
Sbjct: 117 YNDENFEEKVIEAEGFEAVLLQHETDHLDGTLFIDRVISKRTDLFRRKKYK 167


>gi|332290887|ref|YP_004429496.1| peptide deformylase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168973|gb|AEE18228.1| peptide deformylase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 196

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V + DP+L++ ++ I         LI+NM + MY   G+GLAA QIG+  R+ ++D  
Sbjct: 4   PIVAYGDPVLKKKAKDITPEYPKFSELIENMYDTMYEAHGVGLAAPQIGLPIRVFLVDTT 63

Query: 65  DHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             A  ++               F+N +I+    +   + EGCLSIP    DV R   +T+
Sbjct: 64  PFAEDESYTPEEQEQLANFKKTFVNAEILEEEGEEWAFSEGCLSIPGINEDVFRKPKVTI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           RY D N +      DGL+A  +QHE DH+ G+LF D LS LK+ +I  K+
Sbjct: 124 RYRDENFKEYTETYDGLIARVIQHEYDHIEGVLFTDKLSSLKKRLIKGKL 173


>gi|110678659|ref|YP_681666.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114]
 gi|109454775|gb|ABG30980.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114]
          Length = 165

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 95/157 (60%), Gaps = 2/157 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR  +  + +I  +++ + D+M++ M +  G+GLAA QIGV+ RL V+D  D   
Sbjct: 9   WPDARLRTAAADVAEITPEVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAVVDASDTRD 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R+  +   NP+II  S   + ++E   ++P   A ++R   +TVR+MD    +      G
Sbjct: 69  RR--IRLANPEIIEASAIMNDHEEASPNLPGVFAKIRRPRGVTVRFMDETGTYVQRDFVG 126

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           L AT +QH++DHL G ++ D+LS++KRDM+ +K  KL
Sbjct: 127 LEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163


>gi|225574496|ref|ZP_03783106.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038283|gb|EEG48529.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM
           10507]
          Length = 174

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+L +  RP+E++N     LID+ML+ MY   G+GLAA Q+GVL R+VV
Sbjct: 16  MALRQIRVEGDPVLTKKCRPVEEMNDRTRQLIDDMLDTMYEAMGVGLAAPQVGVLKRIVV 75

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INPKI+  S +     EGCLSIP    +V R  ++     + N +
Sbjct: 76  IDVGE-----GPLVMINPKIVETSGE-QTGDEGCLSIPGMAGEVTRPNYVKAIAFNENME 129

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +    LLA  + HE DHL+GI++  H++
Sbjct: 130 EFEVEGTELLARAICHECDHLDGIMYTAHVN 160


>gi|170759595|ref|YP_001787825.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169406584|gb|ACA54995.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
          Length = 147

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 92/143 (64%), Gaps = 8/143 (5%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+ SR IEKI+  I+ L+++M+E MYS +G+GLAA Q+G+L R VVID+ +   
Sbjct: 9   YGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVVIDVGEGLI 68

Query: 69  RKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           +      INP+II T  +   V  EGCLS+P  + +V+R   + V+ ++   +  ++  +
Sbjct: 69  K-----LINPEIIETEGNQKDV--EGCLSVPGEQGEVERPYKVKVKALNEKGEEIVLEGE 121

Query: 128 GLLATCLQHELDHLNGILFIDHL 150
            LLA    HE+DHL+G+LF+D +
Sbjct: 122 DLLARAFCHEIDHLDGVLFVDKV 144


>gi|255525805|ref|ZP_05392735.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296186362|ref|ZP_06854766.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255510538|gb|EET86848.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296049163|gb|EFG88593.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 156

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++ F D IL+R SR +EK++ +++ L++++ + +Y+  GIGLAA QIGVL +++ 
Sbjct: 1   MAVKQILQFGDNILKRSSRRVEKVDEELLGLVEDLKDSLYNGTGIGLAAPQIGVLKKVIF 60

Query: 61  IDLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           IDL+D   +  P++ INPKII     + SV  EGCLS P Y   V R   + V       
Sbjct: 61  IDLRD---KTEPILLINPKIIKKIGKEDSV--EGCLSYPGYEGIVVRPKKVIVAGKSLKW 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +     A+GLLA    HE+DHL+GIL+ D   ++ R
Sbjct: 116 EDVEYTAEGLLAKAFCHEIDHLSGILYTDKAKKIYR 151


>gi|288923166|ref|ZP_06417311.1| peptide deformylase [Frankia sp. EUN1f]
 gi|288345479|gb|EFC79863.1| peptide deformylase [Frankia sp. EUN1f]
          Length = 185

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 5/155 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+    DP+LR  +  +   ++ +  L+DNM+E MY+  G+GLAA Q+GV  ++ V D +
Sbjct: 2   PIRTLGDPVLRTPAEAVTVFDAALRRLVDNMIETMYAAPGVGLAAPQVGVSLQVFVFDTE 61

Query: 65  ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D A  + P+V +NP + T   +     EGCLS+P +     R+A  TVR +D    
Sbjct: 62  YDPRDVAVPRRPLVVVNPVLETGPGE-QHDDEGCLSVPGHAYPTTRAATATVRGVDATGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                ADGLLA C QHE DHL+G L+ID L+   R
Sbjct: 121 AVRYEADGLLARCFQHETDHLHGRLYIDRLTGEDR 155


>gi|163743814|ref|ZP_02151187.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161382963|gb|EDQ07359.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
          Length = 169

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 3/152 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L   ++PI     D+  L  +ML+ MY+  G GLAA Q+GVL RL V
Sbjct: 1   MAVLPIRAWPDPVLSTPAKPI-ATPRDVETLARDMLDTMYAAPGRGLAAPQVGVLIRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA- 119
           +D       ++P+V +NP I+  S + +   EGCLSI     +V R A++ + + D    
Sbjct: 60  MDTTWKEGTRDPLVCVNPDIVALSAETATMSEGCLSIKGVSLEVTRPAWVDLAWSDLQGV 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +HQ  + +G  A C+QHE DHL G +  D +S
Sbjct: 120 RHQRRF-EGFAAACVQHEYDHLEGRVTFDRVS 150


>gi|161511100|ref|NP_770645.2| peptide deformylase [Bradyrhizobium japonicum USDA 110]
          Length = 165

 Score =  110 bits (276), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV +PD  L   +RP+   + ++  L  ++L+ M +  GIG+ A  IGV  R+VV
Sbjct: 1   MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L     +     ++NP+I   S +  +++EG +S+P    +V+R A + + Y D +  
Sbjct: 61  LELD---AKDGARTYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   ++ L A C QHE+D L+G+ +I  LSRLKR+ + KK  K+
Sbjct: 118 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKM 162


>gi|188997413|ref|YP_001931664.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932480|gb|ACD67110.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 177

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 8/163 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----- 63
           +PDPIL+  ++ ++  +  +   I+ M E MY  +G+GLAA QIG+ Y+++VID      
Sbjct: 8   WPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTSLREK 67

Query: 64  --QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
             ++ A     MV INPKI+    +     EGCLS P  +  + R+  + V   +   + 
Sbjct: 68  RSEEEAEPPVKMVLINPKIVEKEGEVQS-TEGCLSFPGVQITIPRAKRVKVVGKNEKGED 126

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I +   LA  LQHE+DHLNGI FI++LS LKR ++  K  K
Sbjct: 127 VEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLK 169


>gi|196234527|ref|ZP_03133350.1| peptide deformylase [Chthoniobacter flavus Ellin428]
 gi|196221407|gb|EDY15954.1| peptide deformylase [Chthoniobacter flavus Ellin428]
          Length = 187

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 16/175 (9%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V + +P+LR   R ++ ++  I  L  +MLE M + +G+GLAA QIGV  ++ VID+  
Sbjct: 5   IVKYGNPVLREKGREVKDVDEKIKQLSVDMLETMRAANGVGLAAQQIGVPIQMTVIDVAG 64

Query: 66  HAHRKN---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
              R +               P+V +NP ++ FS++     EGCLS PD  A++ RS+ +
Sbjct: 65  IEDRPSAMWINDKEVPIEEHMPLVLLNP-VLKFSEEKESGNEGCLSFPDITAEITRSSGV 123

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  + +     A GLLA  LQHE DHL+G+LFID ++   +  I+ K+ +L
Sbjct: 124 QCTATLLDGKKIEFEAAGLLARALQHETDHLHGVLFIDRMNAATKAGISGKLKRL 178


>gi|302844969|ref|XP_002954024.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
           nagariensis]
 gi|300260836|gb|EFJ45053.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
           nagariensis]
          Length = 177

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 4/166 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDP LR V+  I   +  ++ L + M+EVMY  DG+GLAA Q+GV  RL+V +   
Sbjct: 13  IVKYPDPRLRAVNARIGVFDDSLLRLANEMIEVMYQDDGVGLAAPQVGVNIRLMVFNPAG 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH-QII 124
                N  + +NP+I+       + +EGCLS P    DV+RS  ITV+ +D N Q  ++ 
Sbjct: 73  RDRPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQITVKALDANGQPVRLQ 132

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             D  +A   QHE DHL G+LF D   R+K  ++      LV L +
Sbjct: 133 LTDPWVARIFQHEYDHLQGVLFHD---RMKPSVLEAVRPALVALEE 175


>gi|289523051|ref|ZP_06439905.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503594|gb|EFD24758.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 165

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 6/153 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P+PILR  ++ +   N D+  LI++M E MY+ DG+GLAA Q+G+   + V+D + 
Sbjct: 6   VIKYPNPILRSKNKIVTAFNDDLKKLIEDMYETMYANDGLGLAAPQVGINLMVAVVDYEG 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             +       +NP I+    +    +EGCLS P+   D++R   + +   D N +   I 
Sbjct: 66  KKY-----TLVNPAILEKRGE-QTGREGCLSFPEVFEDIERPEIVKIEAFDENGEKYAIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           A GLLA    HE+DHL+G L ID +S +KR+MI
Sbjct: 120 ASGLLARAFCHEIDHLHGRLIIDMVSPVKRNMI 152


>gi|227554544|ref|ZP_03984591.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|257078288|ref|ZP_05572649.1| formylmethionine deformylase [Enterococcus faecalis JH1]
 gi|293385128|ref|ZP_06630954.1| peptide deformylase [Enterococcus faecalis R712]
 gi|293389101|ref|ZP_06633573.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294779979|ref|ZP_06745359.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|307273623|ref|ZP_07554851.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|307288889|ref|ZP_07568862.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|307292141|ref|ZP_07572007.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|312910850|ref|ZP_07769686.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|227176342|gb|EEI57314.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|256986318|gb|EEU73620.1| formylmethionine deformylase [Enterococcus faecalis JH1]
 gi|291077605|gb|EFE14969.1| peptide deformylase [Enterococcus faecalis R712]
 gi|291081569|gb|EFE18532.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294452960|gb|EFG21382.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|306496794|gb|EFM66345.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|306500161|gb|EFM69505.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|306509636|gb|EFM78678.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|311288873|gb|EFQ67429.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|315034825|gb|EFT46757.1| peptide deformylase [Enterococcus faecalis TX0027]
 gi|315150901|gb|EFT94917.1| peptide deformylase [Enterococcus faecalis TX0012]
 gi|315164416|gb|EFU08433.1| peptide deformylase [Enterococcus faecalis TX1302]
 gi|315167224|gb|EFU11241.1| peptide deformylase [Enterococcus faecalis TX1341]
 gi|315172963|gb|EFU16980.1| peptide deformylase [Enterococcus faecalis TX1346]
 gi|315573272|gb|EFU85463.1| peptide deformylase [Enterococcus faecalis TX0309B]
 gi|327536241|gb|AEA95075.1| formylmethionine deformylase [Enterococcus faecalis OG1RF]
          Length = 164

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 4/149 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 1   MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ + + R      INP II      S+  EGCLSIP+    V+R+  +TVRY D   + 
Sbjct: 61  EIDEESGR---FELINPVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHLNG LFID +
Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145


>gi|261419369|ref|YP_003253051.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297530654|ref|YP_003671929.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|319766184|ref|YP_004131685.1| peptide deformylase [Geobacillus sp. Y412MC52]
 gi|261375826|gb|ACX78569.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297253906|gb|ADI27352.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|317111050|gb|ADU93542.1| peptide deformylase [Geobacillus sp. Y412MC52]
          Length = 157

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 4/148 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +PDPIL +   P+   +  +  L+D+M E M + DG+GLAA QIGV  ++ VID+ 
Sbjct: 5   PIVTYPDPILEQPCAPVTAFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQIAVIDVG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R   +  INP +I    +  V  EGCLS P    +V R+ F+ VR  +   +   +
Sbjct: 65  DEHGR---IELINPVVIEARGE-QVDVEGCLSFPGLFGEVPRAKFVKVRAQNRRGRPFTL 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
            A G LA  LQHE+DHL+G+LF   + R
Sbjct: 121 SATGFLARALQHEIDHLHGVLFTSKVIR 148


>gi|126738019|ref|ZP_01753740.1| peptide deformylase [Roseobacter sp. SK209-2-6]
 gi|126720516|gb|EBA17221.1| peptide deformylase [Roseobacter sp. SK209-2-6]
          Length = 165

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  +  + +I  ++     ++++ M +  G+G+ A QIGV+ RL V
Sbjct: 1   MSVRPCLPWPDQRLRTAATEVVEITDEVRTTWQDLIDTMEAMPGVGMGANQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D    + R   +   NP+I+  S     ++E   ++P   A +KR   +TVRYMD N +
Sbjct: 61  VD--GSSERGRAVRMANPEILHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118

Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             I   D  G+ AT +QH++DHL+G L+ D LS++KRDM+ KK  K 
Sbjct: 119 --ITERDFVGIEATSVQHQIDHLDGKLYFDRLSKVKRDMLIKKSKKF 163


>gi|254465693|ref|ZP_05079104.1| peptide deformylase [Rhodobacterales bacterium Y4I]
 gi|206686601|gb|EDZ47083.1| peptide deformylase [Rhodobacterales bacterium Y4I]
          Length = 165

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 6/160 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR  +  + +I  ++  + ++M++ M +  G+GLAA QIGV+ RL V+D    A 
Sbjct: 9   WPDKRLRTKAEEVTEITDEVREIWNDMVDTMEAMPGVGLAANQIGVMLRLAVVD--GSAE 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127
           R   +   NP+I+  S +   + E   ++P   A +KR   +TVRY+  N Q  I   D 
Sbjct: 67  RGRAVKLANPEILHASIELREHDEASPNLPGVSAKIKRPRAVTVRYL--NEQGMIDRRDF 124

Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  KL 
Sbjct: 125 VGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLIRKAKKLT 164


>gi|154485069|ref|ZP_02027517.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC
           27560]
 gi|149734022|gb|EDM50141.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC
           27560]
          Length = 165

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 87/141 (61%), Gaps = 1/141 (0%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +P LR++ +P++++N     LI +M + MY  +G+GLAA Q+G+L R+ V+D  D     
Sbjct: 11  EPCLRKICKPVKEVNLRTKILIGDMFDTMYEANGVGLAAPQVGILKRIFVVDCGDEEGNS 70

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P VFINP+II      + Y EGCLS+P     V R+  + V+  + N +   + A+GLL
Sbjct: 71  VPYVFINPEIIDREGVQTGY-EGCLSVPGKSGMVPRAQKVKVKAFNENMEEFEMEAEGLL 129

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A C+ HE DHL+GI+++D + 
Sbjct: 130 ARCILHENDHLDGIVYVDKVE 150


>gi|39931120|sp|Q89N37|DEFL_BRAJA RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|27352266|dbj|BAC49270.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110]
          Length = 170

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV +PD  L   +RP+   + ++  L  ++L+ M +  GIG+ A  IGV  R+VV
Sbjct: 6   MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L     +     ++NP+I   S +  +++EG +S+P    +V+R A + + Y D +  
Sbjct: 66  LELD---AKDGARTYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   ++ L A C QHE+D L+G+ +I  LSRLKR+ + KK  K+
Sbjct: 123 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKM 167


>gi|83855043|ref|ZP_00948573.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
 gi|83842886|gb|EAP82053.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
          Length = 155

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 1/147 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PD  L  V  P+     +I  LI +M + MY+  G GLAA Q+G   R+ V D   
Sbjct: 6   IVTWPDARLTAVCAPVATRTPEIDQLIADMFDTMYAAPGRGLAAPQVGRTERIFVFDAGW 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I++ SD  ++ +EGCLSIP    D+ R+  +T+R+ D +  H+  +
Sbjct: 66  KEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADGTHERKF 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A G  A  +QHE DHL+GI+  D +++
Sbjct: 126 A-GAEAVIVQHEYDHLDGIVIYDRVAQ 151


>gi|83941566|ref|ZP_00954028.1| peptide deformylase [Sulfitobacter sp. EE-36]
 gi|83847386|gb|EAP85261.1| peptide deformylase [Sulfitobacter sp. EE-36]
          Length = 155

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 1/147 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PD  L  V  P+     +I  LI +M E MY+  G GLAA Q+G   R+ V D   
Sbjct: 6   IVTWPDARLTAVCAPVATRTPEIDQLIADMFETMYAAPGRGLAAPQVGRTERIFVFDAGW 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I++ SD  ++ +EGCLSIP    D+ R+  +T+R+ D +  H+  +
Sbjct: 66  KEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADGTHERKF 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
             G  A  +QHE DHL+GI+  D +++
Sbjct: 126 T-GAEAVIVQHEYDHLDGIVIYDRVAQ 151


>gi|297544786|ref|YP_003677088.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842561|gb|ADH61077.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 159

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 93/143 (65%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++P+ +INS ++ ++D+M++ MY  +G+GLAA Q+G+L RL+VID+ +     
Sbjct: 11  DEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIVIDIGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+ + +   V  EGCLSIP    +VKR   + V+Y+D   + + I  + LL
Sbjct: 66  GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGKEREIEGEDLL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  L HE+DHLNG+LFID   R 
Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147


>gi|108804305|ref|YP_644242.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
 gi|108765548|gb|ABG04430.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
          Length = 164

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 5/156 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           F DP+L+  + P++  +  +  L + M E M   +G+GLAA Q+G L R+ V +++D   
Sbjct: 8   FGDPVLKSRAAPVKTFDGALARLAEEMFETMREHEGVGLAANQVGRLKRIFVAEVEDRR- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +V +NP I   S+     +EGCLSIP  R +V+R A + +   + +     I A+G
Sbjct: 67  ----LVVVNPAIEEASERTERAEEGCLSIPGVRVEVERPAAVVLTGQNLDGSPLRIEAEG 122

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LLA  LQHE DHL+G+L +D + R  R    +++ +
Sbjct: 123 LLARVLQHETDHLDGVLILDRVDRETRRAALRELRE 158


>gi|15888871|ref|NP_354552.1| peptide deformylase [Agrobacterium tumefaciens str. C58]
 gi|23396558|sp|Q8UF49|DEFL_AGRT5 RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|15156637|gb|AAK87337.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58]
          Length = 164

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L  +  P+   +  +  L+ ++++ M +  G+G+ A  IGVL R+ V
Sbjct: 1   MAIRPILPYPHAGLSGICAPVTVFDDHLRELVTDLIDTMRAAPGVGITAAHIGVLQRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L         + +INP+I + S     + EG +S+P +  +V+R + + VR+ D    
Sbjct: 61  LELTP----GTILTYINPEITSHSPQTMRHVEGSVSMPGFTDEVERPSTVEVRFQDITGA 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q   A+G  A C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 117 EQTETAEGFHAICIQHEIDQLDGIFWLKRLSRLKRDRLVKKWEK 160


>gi|302386506|ref|YP_003822328.1| peptide deformylase [Clostridium saccharolyticum WM1]
 gi|302197134|gb|ADL04705.1| peptide deformylase [Clostridium saccharolyticum WM1]
          Length = 163

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 5/157 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+  +P+++I   I  L+++M E MY ++G+GLAA Q+GVL ++VVID++D     
Sbjct: 11  DEILRKQCKPVKEITPRITELVEDMFETMYDSNGVGLAASQVGVLKQIVVIDVEDG---- 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           N  V INP+I+  +       EGCLS+P     V R  ++ ++  D + +   +  +GLL
Sbjct: 67  NQYVLINPEILE-TRGSQTGPEGCLSVPGKSGTVTRPEYVRIKAYDASMEPYELEGEGLL 125

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           A  + HE DHLNG L++D +     D+   +    V+
Sbjct: 126 ARAICHECDHLNGDLYVDKVEGELEDVTPDEEEGEVE 162


>gi|327200562|pdb|3M6Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41q Mutant In Complex With
           Actinonin
          Length = 193

 Score =  110 bits (276), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 88/160 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++ NL+D M +VMY TD IGL+A Q+G+  +L+V +   
Sbjct: 3   IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDQIGLSAPQVGLNVQLMVFNPAG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 63  EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              L A   QHE DHL G+LF D ++    D I +++  L
Sbjct: 123 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 162


>gi|118340581|gb|ABK80631.1| putative formylmethionine deformylase [uncultured marine
           Nitrospinaceae bacterium]
          Length = 169

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 102/161 (63%), Gaps = 5/161 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ 64
           ++++PD  L++VS+P+E+ + D+   I+N+ E   S  G +G+AA Q+G L R+V++D+ 
Sbjct: 6   ILVYPDERLKQVSQPVEEFSEDLKKFIENLEETFRSFPGCVGIAAPQVGRLERIVLVDIS 65

Query: 65  DHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             +   N   +V INP++I F +  S+ +EGCLS+PD+   V+RS  I ++ ++   +  
Sbjct: 66  HKSKHVNHGFLVLINPEVI-FYEGNSLGREGCLSVPDFIGKVERSKSINLKALNQKGEKL 124

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            +   G  A  +QHE+DHLNG LF+D L   +R+ ++K++ 
Sbjct: 125 ELQMSGYEARAVQHEIDHLNGKLFLDRLVS-RRNSLSKRIE 164


>gi|167763509|ref|ZP_02435636.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC
           43183]
 gi|167698803|gb|EDS15382.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC
           43183]
          Length = 184

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 98/168 (58%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+VV+DL 
Sbjct: 4   PVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVVDLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D+   K     +IN  I+  S +    +EGCLS+P     VKR   I V+Y+D + 
Sbjct: 64  VLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLDEDL 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL+G +FIDHLS L+R MI  K++ +++
Sbjct: 124 VEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRRQMIKGKLNAMLK 171


>gi|260427470|ref|ZP_05781449.1| peptide deformylase [Citreicella sp. SE45]
 gi|260421962|gb|EEX15213.1| peptide deformylase [Citreicella sp. SE45]
          Length = 164

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  + P+E I  +I  +  +M++ M +  G+GL A QIGV+ RL V
Sbjct: 1   MTARLCIPWPDKRLRTPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R   +   NP+++  S     + E   ++P   A + R   + VR++  NA+
Sbjct: 61  VDASEK--RGEAVRMANPEVLHASVKLRSHDEASPNLPGVWASIDRPRAVAVRFL--NAE 116

Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +I   D  GL AT +QH++DHLNG ++ DHLS++KRDM+ ++  K
Sbjct: 117 GEIEERDFVGLWATSVQHQIDHLNGRMYFDHLSKVKRDMLLRRAKK 162


>gi|312111728|ref|YP_003990044.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
 gi|311216829|gb|ADP75433.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
          Length = 157

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 4/148 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +P  IL +   P+++ +  ++ L+++M + M   DG+GLAA Q+G+  ++ V+D+ 
Sbjct: 5   PIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAVVDVG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R   +  INP+I+    +  +  EGCLS P   A+VKR+ ++ VR  D   +   +
Sbjct: 65  DEHGR---IELINPRIMEARGE-QIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGRPFTL 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
            A G LA  LQHE+DHLNGILF   + R
Sbjct: 121 KATGFLARALQHEIDHLNGILFTSKVIR 148


>gi|126738020|ref|ZP_01753741.1| peptide deformylase [Roseobacter sp. SK209-2-6]
 gi|126720517|gb|EBA17222.1| peptide deformylase [Roseobacter sp. SK209-2-6]
          Length = 168

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 5/144 (3%)

Query: 12  PILRR----VSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           PILR     +S+  E++  S + +L+ +M E MY+  G GLAA Q+GV++RL V+D    
Sbjct: 5   PILRWPHEGLSKRCEEVAPSTLGSLVADMFETMYAAPGRGLAAPQVGVMHRLFVMDATWK 64

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
               +P+V INP+I+ +     +  EGCLSIP    DV+RS  + +R+ D     Q  + 
Sbjct: 65  EGPGSPVVMINPEIMAYDGGTDILAEGCLSIPGITIDVERSKSVNMRWQDQAGDWQERWF 124

Query: 127 DGLLATCLQHELDHLNGILFIDHL 150
            G  A C+QHE DHL G +  DHL
Sbjct: 125 SGFEARCIQHEFDHLEGRVTFDHL 148


>gi|260167211|ref|ZP_05754022.1| peptide deformylase [Brucella sp. F5/99]
 gi|261756615|ref|ZP_06000324.1| peptide deformylase-like protein [Brucella sp. F5/99]
 gi|261736599|gb|EEY24595.1| peptide deformylase-like protein [Brucella sp. F5/99]
          Length = 164

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A  K   ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRAAGSK---IYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162


>gi|57168634|ref|ZP_00367766.1| polypeptide deformylase [Campylobacter coli RM2228]
 gi|305432738|ref|ZP_07401898.1| peptide deformylase [Campylobacter coli JV20]
 gi|57019915|gb|EAL56595.1| polypeptide deformylase [Campylobacter coli RM2228]
 gi|304444247|gb|EFM36900.1| peptide deformylase [Campylobacter coli JV20]
          Length = 175

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 100/165 (60%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV+K ++ +P+  L   S P+++ + ++  L+D+M + M ++ G+GLAA+Q+ +  R ++
Sbjct: 1   MVRK-IITYPNSRLFLNSEPVKQFDQELHTLLDDMYDTMIASQGVGLAAIQVDIPLRALI 59

Query: 61  IDLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++ D      +++ +  INP+II   ++     EGCLS+PD+  +V+R   I ++Y D 
Sbjct: 60  VNILDENEEQKKEDLLEIINPQIIPLGEEKITCTEGCLSVPDFFEEVERYNHILLKYQDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
               + + A G LA  +QHE DHLNG LFI+ +S LKR    K+ 
Sbjct: 120 FGNFKELEAQGFLAVAIQHENDHLNGHLFIEKISFLKRQKFDKEF 164


>gi|163744870|ref|ZP_02152230.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45]
 gi|161381688|gb|EDQ06097.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45]
          Length = 165

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           V++PD  LR  + PIE +  +I  L D+M+E M +  G+GLAA QIGV+ ++ V+D  + 
Sbjct: 7   VLWPDKRLRSPAEPIEAVTDEIRTLWDDMIETMDAMPGVGLAAPQIGVMLQVAVVDASEA 66

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            +++  +   NP II  S     Y+E   ++P + A ++R   + VR++D          
Sbjct: 67  RNKR--IRLANPVIIDASAVLHPYEEASPNLPGFSAVIRRPRGVKVRFLDETGAEVERDF 124

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            GL A  +QH++DHL G ++ D+LS+ KRDM+ +K  KL
Sbjct: 125 VGLEAVSVQHQIDHLAGKMYFDNLSKTKRDMLLRKARKL 163


>gi|257899948|ref|ZP_05679601.1| formylmethionine deformylase [Enterococcus faecium Com15]
 gi|257837860|gb|EEV62934.1| formylmethionine deformylase [Enterococcus faecium Com15]
          Length = 163

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+R ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ VI
Sbjct: 1   MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGKNKRIAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +          INP+II    + S+  EGCLSIP     VKR+  +TVRY D + + 
Sbjct: 61  EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|86137255|ref|ZP_01055833.1| peptide deformylase [Roseobacter sp. MED193]
 gi|85826579|gb|EAQ46776.1| peptide deformylase [Roseobacter sp. MED193]
          Length = 168

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L  +  P+ +   D+  LI +M E MY+  G GLAA Q+GVL RL V
Sbjct: 1   MALLPILQWPDAGLSTLCTPVGE--EDLTRLIADMFETMYAAPGRGLAAPQVGVLKRLFV 58

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+V INP+ ++   D     EGCLSIP     V R   +++R+ D +  
Sbjct: 59  MDATWKEAPGTPLVMINPEFLSVGADLESGDEGCLSIPGVLTSVPRPKTVSLRWQDQDRN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                 DG  A C+QHE DHL G++ ++ L+   R
Sbjct: 119 WTSGSFDGFAARCIQHEYDHLEGLVTLNRLTPAAR 153


>gi|159463814|ref|XP_001690137.1| peptide deformylase [Chlamydomonas reinhardtii]
 gi|158284125|gb|EDP09875.1| peptide deformylase [Chlamydomonas reinhardtii]
          Length = 248

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 4/166 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP LR V+  I   +  +M L   M+E+MY  DG+GLAA Q+GV  RL+V +   
Sbjct: 58  IIKYPDPRLRAVNAKINVFDESLMRLAKEMIEIMYQDDGVGLAAPQVGVNVRLMVFNPMG 117

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH-QII 124
                N  + +NP+I+       + +EGCLS P    DV+RS  I V+ +D   Q  ++ 
Sbjct: 118 RDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQINVKALDATGQPVKLT 177

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             D  +A   QHE DHL G+LF D   R+K  ++     +LV L +
Sbjct: 178 LTDPWVARIFQHEFDHLQGVLFHD---RMKPSVLETVRPELVALEE 220


>gi|167626939|ref|YP_001677439.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596940|gb|ABZ86938.1| Peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 172

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 9   FPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +P PIL+ +++ +  E+I+ D    I  M E+M   +G+GLAA+Q+G+  R  +  + D+
Sbjct: 8   YPHPILKEIAKEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFFI--MYDN 65

Query: 67  AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + P +              +  +EGCLS P   A + R+  + ++ ++   Q   + 
Sbjct: 66  LESETPKIITIINPKIIDQSGKIIDEEGCLSFPGVSAKINRATRVKIKALNEFGQEIEVE 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            D  LA C+QHE+DHLNG+ F DHL  LKR MI KK  KL+Q
Sbjct: 126 KDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQ 167


>gi|326783953|ref|YP_004324347.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
 gi|310003965|gb|ADO98360.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
          Length = 128

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 77/121 (63%)

Query: 31  LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY 90
           L D M E M+++DGIGLAA Q+G+  R++V+D     H K   + +NPKI   S++  ++
Sbjct: 4   LYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVLF 63

Query: 91  QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            EGCLS+PD   +V R   I V + + + +++    DGL A  +QHE+DHL GILF+D+ 
Sbjct: 64  DEGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYF 123

Query: 151 S 151
           +
Sbjct: 124 N 124


>gi|241667516|ref|ZP_04755094.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876062|ref|ZP_05248772.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842083|gb|EET20497.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 172

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 9   FPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +P PIL+ +++ +  E+I+ D    I  M E+M   +G+GLAA+Q+G+  R  +  + D+
Sbjct: 8   YPHPILKEIAQEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFFI--MYDN 65

Query: 67  AHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + P +              +  +EGCLS P   A V R+  + ++ ++   Q   + 
Sbjct: 66  LESETPKIITIINPKIIDQSGKIIDEEGCLSFPGVSAKVNRATRVKIKALNEFGQEIEVE 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            D  LA C+QHE+DHLNG+ F DHL  LKR MI KK  KL+Q
Sbjct: 126 KDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQ 167


>gi|115438779|ref|NP_001043669.1| Os01g0637600 [Oryza sativa Japonica Group]
 gi|75251983|sp|Q5VNN5|DEF1B_ORYSJ RecName: Full=Peptide deformylase 1B, chloroplastic; Short=OsPDF1B;
           Short=PDF 1B; Flags: Precursor
 gi|55297005|dbj|BAD68576.1| putative polygalacturonase [Oryza sativa Japonica Group]
 gi|55297594|dbj|BAD68940.1| putative polygalacturonase [Oryza sativa Japonica Group]
 gi|113533200|dbj|BAF05583.1| Os01g0637600 [Oryza sativa Japonica Group]
 gi|164633054|gb|ABY64740.1| peptide deformylase 1B1 [Oryza sativa Japonica Group]
 gi|215741408|dbj|BAG97903.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 269

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 80/146 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 80  VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 139

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP +   S    VY+EGCLS P   A+V R   + +   D       + 
Sbjct: 140 VKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 199

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
             GL A   QHE DHL GILF D +S
Sbjct: 200 LSGLSARVFQHEFDHLQGILFFDRMS 225


>gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex aeolicus VF5]
 gi|6014949|sp|O66847|DEF_AQUAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2983203|gb|AAC06802.1| polypeptide deformylase [Aquifex aeolicus VF5]
          Length = 169

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 6/167 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           +VI+P+ IL++ +  ++ I+ ++ NLI +M + MY  +G+GLAA QIGV   ++VID   
Sbjct: 5   IVIYPNEILKKPTEKVDVIDKEVKNLIRDMFDTMYEAEGVGLAANQIGVPLSVMVIDTSP 64

Query: 64  -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            +D    K  +V INP+I         Y+EGCLS P    +V+R   + V  ++ + +  
Sbjct: 65  KEDAPPLK--LVLINPEIKEGEGKIK-YKEGCLSFPGLSVEVERFQKVKVNALNEHGEPV 121

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +  +G  A   QHELDHL GI F+D L   +R M  +K  KL++ R
Sbjct: 122 ELTLEGFPAIVFQHELDHLKGITFVDRLKGWRRRMALEKYQKLLKSR 168


>gi|170754628|ref|YP_001782053.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|169119840|gb|ACA43676.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
          Length = 147

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 92/143 (64%), Gaps = 8/143 (5%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+ SR IEKI+  I+ L+++M+E MY+ +G+GLAA Q+G+L R VVID+ +   
Sbjct: 9   YGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVVIDVGEGLI 68

Query: 69  RKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           +      INP+II T  +   V  EGCLS+P  + +V+R   + V+ ++   +  ++  +
Sbjct: 69  K-----LINPEIIETEGNQKDV--EGCLSVPGEQGEVERPYKVKVKALNEKGEEVVLEGE 121

Query: 128 GLLATCLQHELDHLNGILFIDHL 150
            LLA    HE+DHL+G+LF+D +
Sbjct: 122 DLLARAFCHEIDHLDGVLFVDKV 144


>gi|89052959|ref|YP_508410.1| formylmethionine deformylase [Jannaschia sp. CCS1]
 gi|88862508|gb|ABD53385.1| formylmethionine deformylase [Jannaschia sp. CCS1]
          Length = 164

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 8/161 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P V +PD  LR ++  +  +      +  +M++ M +  G+GLAA QIGV+ RL V+D 
Sbjct: 4   RPFVPYPDKRLRTMAETVGPVTDAHREIWQDMIDTMDAMPGVGLAAPQIGVMLRLAVVDA 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD---CNAQ 120
            D   R   +   +P+II+ SD+ + Y EG  ++P   A + R A +TV + D      +
Sbjct: 64  SD--DRGQAIRMADPEIISASDEMNTYPEGSPNLPGVTAKITRPARVTVAFTDHMGLRVR 121

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            + +    L AT +QH++DHL G +++DHLSR KR+M+ KK
Sbjct: 122 QEFV---DLWATSVQHQIDHLAGKVYVDHLSRTKREMVIKK 159


>gi|327398717|ref|YP_004339586.1| peptide deformylase [Hippea maritima DSM 10411]
 gi|327181346|gb|AEA33527.1| Peptide deformylase [Hippea maritima DSM 10411]
          Length = 168

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 95/163 (58%), Gaps = 6/163 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLVVID 62
           + +VI+PD  L+ +   I+ IN + + +  ++LE M Y    +G+AA QIG L R++ +D
Sbjct: 4   RDIVIYPDQRLKAICDEIKNINDEALQVAKDLLETMRYYNHTVGIAAPQIGELVRIIAVD 63

Query: 63  LQDHAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              +   +      ++ INP+I+ +S      +EGCLS+PDY  +V R+  ITV+Y D +
Sbjct: 64  ASKNKKGQKINHGELIMINPEILDWSSIIKT-REGCLSVPDYTGNVNRARKITVKYWDLD 122

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            +      +G  A  +QHE+DHL+GILFID +   + D+  +K
Sbjct: 123 GKEHQFDTEGFEAVVIQHEIDHLDGILFIDRIISKRTDLFRRK 165


>gi|189218929|ref|YP_001939570.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum
           V4]
 gi|238692077|sp|B3DUG9|DEF_METI4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189185787|gb|ACD82972.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum
           V4]
          Length = 190

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 15/174 (8%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           LV++ +PILR+   PI+  +  +  L+ +MLE M    G+GLAA Q+G+  +L VID+  
Sbjct: 5   LVLYDNPILRKKGMPIDSFDDRLKRLVQDMLETMAYYKGVGLAAQQVGLNLQLAVIDVSG 64

Query: 66  H--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
                               P+  INP  ++++    +  EGCLS P  R DV RS  + 
Sbjct: 65  SKLSSSLLIGGKPAMVEEHMPLFLINP-TLSYTQSKEISNEGCLSFPGLRIDVPRSKRVK 123

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           V+  D   +     A G L+  +QHE DHL G LFID+LS  ++  I +++ K+
Sbjct: 124 VKTFDLEGRPWYFEAGGFLSVAIQHEFDHLQGKLFIDYLSAEQKKAIKEELEKI 177


>gi|327200563|pdb|3M6R|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
 gi|327200564|pdb|3M6R|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
 gi|327200565|pdb|3M6R|C Chain C, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
 gi|327200566|pdb|3M6R|D Chain D, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
          Length = 193

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 88/160 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++ NL+D M +VMY TD IGL+A Q+G+  +L+V +   
Sbjct: 3   IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDMIGLSAPQVGLNVQLMVFNPAG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 63  EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              L A   QHE DHL G+LF D ++    D I +++  L
Sbjct: 123 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 162


>gi|195941804|ref|ZP_03087186.1| polypeptide deformylase (def) [Borrelia burgdorferi 80a]
 gi|223889134|ref|ZP_03623723.1| peptide deformylase [Borrelia burgdorferi 64b]
 gi|224533042|ref|ZP_03673648.1| peptide deformylase [Borrelia burgdorferi WI91-23]
 gi|226320763|ref|ZP_03796319.1| peptide deformylase [Borrelia burgdorferi 29805]
 gi|226322023|ref|ZP_03797548.1| peptide deformylase [Borrelia burgdorferi Bol26]
 gi|223885383|gb|EEF56484.1| peptide deformylase [Borrelia burgdorferi 64b]
 gi|224512036|gb|EEF82431.1| peptide deformylase [Borrelia burgdorferi WI91-23]
 gi|226232613|gb|EEH31367.1| peptide deformylase [Borrelia burgdorferi Bol26]
 gi|226233818|gb|EEH32543.1| peptide deformylase [Borrelia burgdorferi 29805]
          Length = 165

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+    
Sbjct: 3   MVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP II  S + S Y+EGCLSIP    D+ R   + + + D N +   I 
Sbjct: 63  MAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|312148406|gb|ADQ31065.1| peptide deformylase [Borrelia burgdorferi JD1]
 gi|312149552|gb|ADQ29623.1| peptide deformylase [Borrelia burgdorferi N40]
          Length = 165

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+    
Sbjct: 3   MVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP II  S + S Y+EGCLSIP    D+ R   + + + D N +   I 
Sbjct: 63  MAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|167630201|ref|YP_001680700.1| peptide deformylase [Heliobacterium modesticaldum Ice1]
 gi|238687984|sp|B0TGS8|DEF_HELMI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167592941|gb|ABZ84689.1| peptide deformylase [Heliobacterium modesticaldum Ice1]
          Length = 151

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR  ++P+ + NS++  LID+M + M +  G+GLAA QIG+  R+ V+++      K
Sbjct: 11  DPVLREKAKPVTRFNSNLGRLIDDMFDTMAAARGVGLAAPQIGIGKRVCVVEVG-----K 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                +NP+II  ++      EGCLSIPDY   VKR   + V+  D   +  I     LL
Sbjct: 66  RRFELVNPEIIE-AEGEQCDAEGCLSIPDYTGRVKRFQRVRVKAQDRKGETFIAEGTDLL 124

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A   QHE+DHL+GILF+D + 
Sbjct: 125 AVAFQHEIDHLDGILFVDRVE 145


>gi|58176979|pdb|1V3Y|A Chain A, The Crystal Structure Of Peptide Deformylase From Thermus
           Thermophilus Hb8
 gi|58176980|pdb|1V3Y|B Chain B, The Crystal Structure Of Peptide Deformylase From Thermus
           Thermophilus Hb8
          Length = 192

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 14/164 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-VVIDL 63
           P+ ++ DP+LRR +RP+E   S I  L ++MLE M+   G+GLAA QIG+  RL V ++ 
Sbjct: 4   PIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEY 62

Query: 64  QDH--AHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITV 112
            D      + P+        V  NP +IT+ +      EG LS+P  Y  +V R+  I V
Sbjct: 63  ADEPEGEEERPLRELVRRVYVVANP-VITYREGLVEGTEGXLSLPGLYSEEVPRAERIRV 121

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            Y D   + +++  +G +A   QHE+DHL+GILF + L + KR+
Sbjct: 122 EYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKRE 165


>gi|38233909|ref|NP_939676.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200170|emb|CAE49851.1| Putative peptide deformylase [Corynebacterium diphtheriae]
          Length = 169

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 1/155 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+L   S  +E  +S I NL+++MLE M +  G+GLAA Q+GV  R+ V
Sbjct: 1   MAIRDIRLFGDPVLTTKSSDVEVFDSSIRNLVNDMLETMDAAGGVGLAANQVGVTKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   H         INP      +D  +  EGCLSIPD + + +R   ++V   D +  
Sbjct: 61  YDCS-HIEDGLRGHIINPVWEPIGEDIQIGPEGCLSIPDVQEETERWMTVSVSGRDVDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + A GL+A C+QHE DHL+G+LF+  L ++ R
Sbjct: 120 PISLVASGLMARCIQHETDHLDGVLFLRKLDKVHR 154


>gi|34541765|ref|NP_906244.1| peptide deformylase [Porphyromonas gingivalis W83]
 gi|39930820|sp|Q7MT07|DEF_PORGI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34398083|gb|AAQ67143.1| polypeptide deformylase [Porphyromonas gingivalis W83]
          Length = 189

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I      +  LI NM E MY +DGIGLAA QIG+  R++VID  
Sbjct: 4   PIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVIDAD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D+        V IN  I    +D     EGCLS+P     V+R   I +RY+D + 
Sbjct: 64  PLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVDEDF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Q       G  A  +QHE DH++G LFIDH+S +++ +I  K+  +++
Sbjct: 124 QPHEEVLQGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIK 171


>gi|225628893|ref|ZP_03786927.1| peptide deformylase [Brucella ceti str. Cudo]
 gi|225616739|gb|EEH13787.1| peptide deformylase [Brucella ceti str. Cudo]
          Length = 214

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 51  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A  K   ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 111 LELDRAAGSK---IYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL
Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 212


>gi|326389546|ref|ZP_08211113.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200]
 gi|325994551|gb|EGD52976.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200]
          Length = 159

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 91/143 (63%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++P+ +IN  I+ ++++M + MY  DG+GLAA QIGVL RLVVID+ +     
Sbjct: 11  DEVLRKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVVIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+ + +   V  EGCLSIP    +VKR   + V+Y+D   + + I  + LL
Sbjct: 66  GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGKEREIEGEDLL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  L HE+DHLNG+LFID   R 
Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147


>gi|255535832|ref|YP_003096203.1| peptide deformylase [Flavobacteriaceae bacterium 3519-10]
 gi|255342028|gb|ACU08141.1| Peptide deformylase [Flavobacteriaceae bacterium 3519-10]
          Length = 190

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 13/159 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+  F D +LR+  + I K   D+  LI NM + M S  GIGLAA Q+G+  RL ++DL 
Sbjct: 4   PIRAFGDAVLRKHCQEITKDYPDLDELIANMFDTMNSAHGIGLAAPQVGLDIRLFIVDLS 63

Query: 64  -----QDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                +D+A   + +     V IN KI+  + +   + EGCLSIPD R DVKR   I + 
Sbjct: 64  PLAEDEDYADIADELKDFKKVLINAKILEETGEEWKFNEGCLSIPDIREDVKRKETIVIE 123

Query: 114 YMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y D N  +H   ++D + A  +QHE DH+ GILF DHLS
Sbjct: 124 YYDENFVKHTDTFSD-MRARVIQHEYDHIEGILFTDHLS 161


>gi|332299918|ref|YP_004441839.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176981|gb|AEE12671.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707]
          Length = 188

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 5/170 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR +S  I     ++  LI +M + MY +DG+GLAA QIG   RL VID  
Sbjct: 6   PIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQVIDAT 65

Query: 65  DHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             A       +  +V IN  + + S++     EGCLS+P     V R   I V YM+   
Sbjct: 66  PLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPESIVVDYMNEQF 125

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q +   G  A  +QHE DHL+G LF+DH+S +++ MI KK+  + + R
Sbjct: 126 EPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175


>gi|313157241|gb|EFR56671.1| peptide deformylase [Alistipes sp. HGB5]
          Length = 181

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 5/156 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+VI+ + +LR+    I     ++  L+++M + +   +G+GLAA QIG   RL ++D  
Sbjct: 4   PIVIYGNEVLRKQCEEIAPDYPEVKKLVEDMFQTLGEAEGVGLAAPQIGKAIRLFIVDCT 63

Query: 65  -----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                D         FINP+I  FS++   Y EGCLS P   ADV RS  I +RY+D N 
Sbjct: 64  PWGEDDPECADYKRAFINPEIYAFSEEKKTYNEGCLSFPGIHADVPRSLAIRMRYLDENF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                   GL A  +QHE DH+ G++F D +S L+R
Sbjct: 124 VEHDEEFHGLKAWVIQHEYDHIEGVVFTDRISPLRR 159


>gi|271966900|ref|YP_003341096.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270510075|gb|ACZ88353.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 182

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 6/172 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+    +P+L R    + + + D+  L+ +M   MY+ +G+GLAA QIG+  R+ V 
Sbjct: 8   TARPITFVGEPVLHRPCETVTRFDDDLAMLVADMFASMYAAEGVGLAANQIGIGLRVFVY 67

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D        V +NP ++    D      Y EGCLS+P  RA + R     V   D  
Sbjct: 68  DCPDETEEFRKGVVVNPTLVMPGPDEEHLDDYAEGCLSVPGQRASLARPDRAVVHGFDVT 127

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                +   GLLA CLQHE DHL G L+ID L   +R+ +   ++   Q RD
Sbjct: 128 GAPVTVEGTGLLARCLQHETDHLEGRLYIDRLPAERREQV---LAAYEQERD 176


>gi|121533703|ref|ZP_01665530.1| peptide deformylase [Thermosinus carboxydivorans Nor1]
 gi|121307694|gb|EAX48609.1| peptide deformylase [Thermosinus carboxydivorans Nor1]
          Length = 154

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 86/143 (60%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L+  + P+ KI+  +  L+D+M + MY+ +G+GLAA Q+GV  R++V+D+ D     
Sbjct: 11  DKVLKEKAAPVGKIDRKVKQLLDDMAQTMYAAEGVGLAAPQVGVSLRIIVVDVGD----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP +I  ++      EGCLS+P    +V+R A + V  ++ + +   I   GLL
Sbjct: 66  GLIELINP-VIVAAEGSETNTEGCLSVPGVYGEVERYAQVVVEGLERSGKKVRITGTGLL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  LQHE+DHL+G+LFI+    L
Sbjct: 125 ARALQHEIDHLDGVLFIEKAKTL 147


>gi|222618926|gb|EEE55058.1| hypothetical protein OsJ_02762 [Oryza sativa Japonica Group]
          Length = 267

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 80/146 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 80  VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 139

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP +   S    VY+EGCLS P   A+V R   + +   D       + 
Sbjct: 140 VKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 199

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
             GL A   QHE DHL GILF D +S
Sbjct: 200 LSGLSARVFQHEFDHLQGILFFDRMS 225


>gi|313886414|ref|ZP_07820134.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924130|gb|EFR34919.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 188

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 5/170 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR +S  I     ++  LI +M + MY +DG+GLAA QIG   RL VID  
Sbjct: 6   PIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQVIDAT 65

Query: 65  DHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             A       +  +V IN  + + S++     EGCLS+P     V R   I V YM+   
Sbjct: 66  PLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPKSIVVDYMNEQF 125

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q +   G  A  +QHE DHL+G LF+DH+S +++ MI KK+  + + R
Sbjct: 126 EPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175


>gi|299140626|ref|ZP_07033764.1| peptide deformylase [Prevotella oris C735]
 gi|298577592|gb|EFI49460.1| peptide deformylase [Prevotella oris C735]
          Length = 187

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 7/170 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+  P+LR+V++ I      +  LI +M E + +++GIGLAA QIG   R+VVIDL 
Sbjct: 4   PIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVIDLD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               D+   K     FIN  I+ F +D      +EGCLS+P     V R   I V+Y D 
Sbjct: 64  VLSDDYPEYKGLRKAFINAHILEFDEDSPKETIEEGCLSLPGLSEKVTRPTRIHVKYQDE 123

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + DG LA  +QHE DHL G +FID +  L++ MI  K+  +++
Sbjct: 124 DFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMK 173


>gi|297811599|ref|XP_002873683.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319520|gb|EFH49942.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 273

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 87/160 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 83  IVEYPDPILRAKNKRIGVFDQNLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP I  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 143 EPGEGEEIVLVNPIIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              L A   QHE DHL G+LF D ++    D I +++  L
Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 242


>gi|154490274|ref|ZP_02030535.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC
           43184]
 gi|154089166|gb|EDN88210.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC
           43184]
          Length = 185

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 95/168 (56%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+ +  +     D+  L+ NM E MY+ DG+GLAA Q+G+  RL+VID  
Sbjct: 4   PVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVIDAD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               D    K      INP  +  S++    +EGCLS+P     V RSA + V+Y+D + 
Sbjct: 64  VMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSAKVRVKYLDEDL 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      +G  A  +QHE +HL G +FID++S ++R +   K++ +++
Sbjct: 124 KEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIK 171


>gi|253580144|ref|ZP_04857411.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848663|gb|EES76626.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA]
          Length = 158

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 84/138 (60%), Gaps = 6/138 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +VSRP+EK+   I +LI +MLE MY   G+GLAA Q+G+L R+VVID+ +     
Sbjct: 11  DEVLAKVSRPVEKMTPRIHDLIGDMLETMYDAMGVGLAAPQVGMLKRIVVIDIGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I+  S +     EGCLS+P     V R  ++ V+ +D +        +GLL
Sbjct: 66  GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKALDEDMNEVEYEGEGLL 124

Query: 131 ATCLQHELDHLNGILFID 148
           A    HE+DHL+G ++ +
Sbjct: 125 ARAFCHEIDHLDGHMYTE 142


>gi|320108553|ref|YP_004184143.1| peptide deformylase [Terriglobus saanensis SP1PR4]
 gi|319927074|gb|ADV84149.1| peptide deformylase [Terriglobus saanensis SP1PR4]
          Length = 187

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 18/157 (11%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR+ +R +   E ++  I  L+ NM E M+   G+GLAA QIG   +L V++ +   
Sbjct: 10  DPVLRKQARALSQEEILSPAIQELVKNMRETMWRAPGVGLAAPQIGESLQLAVLEGRPQF 69

Query: 68  HRK-----------NP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           H+K            P   +   NPKI       S Y EGCLSIP + A V RS  + V 
Sbjct: 70  HKKMNEAEVKEWQSTPYDYLAIFNPKIELLPAHVSAY-EGCLSIPGFMASVPRSQSVRVT 128

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++  A+ Q+I A+G  A  LQHE+DHLNG+L+ID +
Sbjct: 129 CLNEKAEPQVIEAEGWFARILQHEIDHLNGVLYIDRM 165


>gi|148380464|ref|YP_001255005.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|153931783|ref|YP_001384687.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|153937071|ref|YP_001388208.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|153938227|ref|YP_001391806.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|168180607|ref|ZP_02615271.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|226949863|ref|YP_002804954.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|148289948|emb|CAL84061.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           3502]
 gi|152927827|gb|ABS33327.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|152932985|gb|ABS38484.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|152934123|gb|ABS39621.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|182668570|gb|EDT80549.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|226842477|gb|ACO85143.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|295319831|gb|ADG00209.1| peptide deformylase [Clostridium botulinum F str. 230613]
 gi|322806777|emb|CBZ04346.1| peptide deformylase [Clostridium botulinum H04402 065]
          Length = 147

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 92/143 (64%), Gaps = 8/143 (5%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+ SR IEKI+  I+ L+++M+E MY+ +G+GLAA Q+G+L R VVID+ +   
Sbjct: 9   YGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVVIDVGEGLI 68

Query: 69  RKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           +      INP+II T  +   V  EGCLS+P  + +V+R   + V+ ++   +  ++  +
Sbjct: 69  K-----LINPEIIETEGNQKDV--EGCLSVPGEQGEVERPYKVKVKALNEKGEEIVLEGE 121

Query: 128 GLLATCLQHELDHLNGILFIDHL 150
            LLA    HE+DHL+G+LF+D +
Sbjct: 122 DLLARAFCHEIDHLDGVLFVDKV 144


>gi|312622713|ref|YP_004024326.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203180|gb|ADQ46507.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 166

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+I     + +V  EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGA-----IELVNPEIEQVEGN-AVDVEGCLSVPNVWGEVERPQKVIVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+GLLA  + HE+DHL+GILF+D + R 
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147


>gi|188995931|ref|YP_001930183.1| peptide deformylase [Porphyromonas gingivalis ATCC 33277]
 gi|238689275|sp|B2RMJ1|DEF_PORG3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188595611|dbj|BAG34586.1| putative peptide deformylase [Porphyromonas gingivalis ATCC 33277]
          Length = 189

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I      +  LI NM E MY +DGIGLAA QIG+  R++VID  
Sbjct: 4   PIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVIDAD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D+        V IN  I    +D     EGCLS+P     V+R   I +RY+D + 
Sbjct: 64  PLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVDEDF 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Q       G  A  +QHE DH++G LFIDH+S +++ +I  K+  +++
Sbjct: 124 QPHEEVLHGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIK 171


>gi|241204791|ref|YP_002975887.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858681|gb|ACS56348.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 164

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P++ +P P L+ V  P+   +S +  L  ++L  M +  G+G+ A  IGV+ R+ V++L
Sbjct: 4   RPILRYPHPGLKTVCAPVTAFDSSLTALAGDLLATMRAAPGVGITAAHIGVVSRVTVLEL 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D A      +++NP I  FS +   + EG +S+P    +V R   I  RY D       
Sbjct: 64  -DKA--DGVRLYVNPHITWFSQETMSHVEGSVSMPGATDEVTRPRAIRFRYQDAEGAVHE 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 121 DGAEDFLAICVQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161


>gi|254519243|ref|ZP_05131299.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
 gi|226912992|gb|EEH98193.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
          Length = 147

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 87/140 (62%), Gaps = 4/140 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D  LR+  + + +I    + LI++M + MY  DG+GLAA Q+G+L R+ VID+ D    +
Sbjct: 11  DEALRKKCKVVTEITPRTLKLIEDMADTMYEADGVGLAAPQVGILQRIFVIDIYDDYGLR 70

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              VFINP+I+  S    + +EGCLS+P   ADV+R  ++ V+ ++   +  ++ A  LL
Sbjct: 71  ---VFINPEILEVSGS-QLGEEGCLSVPGEVADVERPNYVKVKALNEKGEEFVLEATELL 126

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A  + HE DHLNG LFID+L
Sbjct: 127 ARAILHENDHLNGTLFIDYL 146


>gi|84514540|ref|ZP_01001904.1| peptide deformylase [Loktanella vestfoldensis SKA53]
 gi|84511591|gb|EAQ08044.1| peptide deformylase [Loktanella vestfoldensis SKA53]
          Length = 152

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 76/138 (55%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR V+ P+   + D+  L+  ML  MY+  G GLAA Q+GV  R+ VID        
Sbjct: 10  DPVLRAVAEPVTAFDEDLALLVAEMLATMYAAPGRGLAAPQVGVSQRVFVIDTTWKDGDP 69

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +P  F+NP+II  S   +   E CLSIPD    V R  ++ +R+ D     Q    DG+ 
Sbjct: 70  DPQAFVNPQIIARSKTTATAVEACLSIPDRAFAVTRPIWVDMRWQDIAGDVQQGRFDGVA 129

Query: 131 ATCLQHELDHLNGILFID 148
           A C+ HE DHL+G+L  D
Sbjct: 130 AICVCHEYDHLDGVLITD 147


>gi|225552226|ref|ZP_03773166.1| peptide deformylase [Borrelia sp. SV1]
 gi|225371224|gb|EEH00654.1| peptide deformylase [Borrelia sp. SV1]
          Length = 165

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ +E I+  I +    M+E+M  + G+GLAA Q+G+   L V+    
Sbjct: 3   MVFYPNDLLRVKTKQVENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENK 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP II  S + S Y+EGCLSIP    D+ R   + + + D N +   I 
Sbjct: 63  MAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|71892002|ref|YP_277732.1| peptide deformylase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|123761479|sp|Q493I1|DEF_BLOPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71796108|gb|AAZ40859.1| polypeptide deformylase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 173

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 89/148 (60%), Gaps = 3/148 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PD  LR ++ P+  ++ D   +I++M + MY   GIGLAA Q+ +  +++VIDL  
Sbjct: 6   ILYYPDKRLRTIADPVVAVSDDTNQIINDMFDTMYFKKGIGLAATQVNIHQQIIVIDL-- 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +   K  +VFINP I   +   S+  E CLSIP     V RS  IT++ +D       + 
Sbjct: 64  YKKNKQRLVFINPSITKKTGIISI-PESCLSIPQIYEIVPRSEKITIQSLDQYGNKFEME 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153
           A+ LLA C+QHE+DHL G LFIDHLS L
Sbjct: 123 ANNLLAICIQHEVDHLFGKLFIDHLSPL 150


>gi|325107786|ref|YP_004268854.1| peptide deformylase [Planctomyces brasiliensis DSM 5305]
 gi|324968054|gb|ADY58832.1| peptide deformylase [Planctomyces brasiliensis DSM 5305]
          Length = 198

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 82/150 (54%), Gaps = 2/150 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-Q 64
           +V++P P LR  S P+++INS +   +D M  +MY   GIGLAA Q+ + Y+L VI+L  
Sbjct: 3   IVLYPHPALRYKSVPVQEINSALRKTVDEMFGLMYDAKGIGLAANQVALPYQLFVINLTA 62

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D A +   MVFINP I+         +EGCLS P+    V RSA I V   D        
Sbjct: 63  DPAEKSEEMVFINPTILKRRGQ-ETGEEGCLSFPEMFGPVDRSAEIVVEAFDLRGALFRY 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLK 154
               + A  +QHE DH+ G LFIDH+   +
Sbjct: 122 ELSEMAARAVQHENDHIEGTLFIDHMKEAE 151


>gi|83951627|ref|ZP_00960359.1| peptide deformylase [Roseovarius nubinhibens ISM]
 gi|83836633|gb|EAP75930.1| peptide deformylase [Roseovarius nubinhibens ISM]
          Length = 165

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 6/164 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P + +PD  LR  +  +  I  +   L D M+ VM +  G+GLAAVQ+G ++RL V+D 
Sbjct: 3   RPCIPWPDKRLRTPAEDVAAITDETCALWDEMIAVMEAMPGVGLAAVQLGEMHRLAVVDA 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
              + R   +   NP+++  S     ++E   ++P   A + R   +TVR++  N + +I
Sbjct: 63  S--SERGQAVRMANPEVLHASAQLREHEEASPNLPGVSAKISRPRAVTVRFL--NQEGEI 118

Query: 124 IYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              D  GL AT +QH++DHL G ++ D LS++KRDM+ ++  KL
Sbjct: 119 EERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARKL 162


>gi|332559342|ref|ZP_08413664.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
 gi|332277054|gb|EGJ22369.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
          Length = 163

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +     E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAVLPILRWPDPRLSQACTAAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++      EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q  +  G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|295399762|ref|ZP_06809743.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978165|gb|EFG53762.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 157

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 88/148 (59%), Gaps = 4/148 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +P  IL +   P+++ +  ++ L+++M + M   DG+GLAA Q+G+  ++ V+D+ 
Sbjct: 5   PIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAVVDVG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R   +  INP+I+    +  +  EGCLS P   A+VKR+ ++ VR  D   +   +
Sbjct: 65  DEHGR---IELINPRIMEARGE-QIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGRPFTL 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
            A G LA  LQHE+DHLNG+LF   + R
Sbjct: 121 KATGFLARALQHEIDHLNGMLFTSKVIR 148


>gi|222529031|ref|YP_002572913.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725]
 gi|254767570|sp|B9MR36|DEF_ANATD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|222455878|gb|ACM60140.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725]
          Length = 166

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 99/165 (60%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+I    +  +V  EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGA-----IELVNPEIEQV-EGSAVDVEGCLSVPNVWGEVERPQKVVVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164
              + A+GLLA  + HE+DHL+GILF+D + R +  + I ++ S+
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSR 159


>gi|228470000|ref|ZP_04054916.1| peptide deformylase [Porphyromonas uenonis 60-3]
 gi|228308381|gb|EEK17219.1| peptide deformylase [Porphyromonas uenonis 60-3]
          Length = 188

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 5/170 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P+ ++  P+LR +S  I     ++  LI +M + MY +DGIGLAA QIG   RL VID  
Sbjct: 6   PIYLYGQPVLRNMSEDITPDYPNLSELIADMWQTMYESDGIGLAAPQIGRNIRLQVIDAT 65

Query: 63  -LQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            L+D       +  V IN  + + S+D     EGCLS+P     V R   I V YM+   
Sbjct: 66  PLEDEYPECATLKLVMINAHMQSLSEDTCSEAEGCLSLPGINERVVRPKSIVVDYMNEQF 125

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q +   G  A  +QHE DHL+G LF+DH+S +++ +I KK+  +V  R
Sbjct: 126 EPQRLELSGYAARVVQHEYDHLDGKLFVDHISAMRKRLIKKKLQHIVDGR 175


>gi|312127907|ref|YP_003992781.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777926|gb|ADQ07412.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108]
          Length = 166

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 99/165 (60%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+I    +  +V  EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGA-----IELVNPEIEQV-EGSAVDVEGCLSVPNVWGEVERPQKVVVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSK 164
              + A+GLLA  + HE+DHL+GILF+D + R +  + I ++ S+
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSR 159


>gi|218130013|ref|ZP_03458817.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697]
 gi|317476772|ref|ZP_07936015.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987816|gb|EEC54142.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697]
 gi|316906947|gb|EFV28658.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 184

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 98/168 (58%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+VV+DL 
Sbjct: 4   PVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVVDLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D+   K     +IN  I+  S +    +EGCLS+P     VKR   I V+Y+D + 
Sbjct: 64  VLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLDEDL 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +++
Sbjct: 124 VEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNAMLK 171


>gi|288925815|ref|ZP_06419746.1| peptide deformylase [Prevotella buccae D17]
 gi|288337470|gb|EFC75825.1| peptide deformylase [Prevotella buccae D17]
          Length = 186

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 7/170 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+  P+LR+V+  I      +  LI +M E + +++G+GLAA QIG   R+ VIDL 
Sbjct: 4   PIYIYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVIDLD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               D    K+    +INP I+ F ++      +EGCLSIP    +V R   I V+Y D 
Sbjct: 64  VLSDDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKYRDT 123

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + +G LA  +QHE DHL+G +F+D +S L++ +I  K+  +++
Sbjct: 124 DFVEHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILK 173


>gi|255970684|ref|ZP_05421270.1| formylmethionine deformylase [Enterococcus faecalis T1]
 gi|256618121|ref|ZP_05474967.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200]
 gi|256761051|ref|ZP_05501631.1| formylmethionine deformylase [Enterococcus faecalis T3]
 gi|256854795|ref|ZP_05560159.1| formylmethionine deformylase [Enterococcus faecalis T8]
 gi|257420429|ref|ZP_05597419.1| formylmethionine deformylase [Enterococcus faecalis X98]
 gi|255961702|gb|EET94178.1| formylmethionine deformylase [Enterococcus faecalis T1]
 gi|256597648|gb|EEU16824.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200]
 gi|256682302|gb|EEU21997.1| formylmethionine deformylase [Enterococcus faecalis T3]
 gi|256710355|gb|EEU25399.1| formylmethionine deformylase [Enterococcus faecalis T8]
 gi|257162253|gb|EEU92213.1| formylmethionine deformylase [Enterococcus faecalis X98]
          Length = 169

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 90/150 (60%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ V
Sbjct: 5   LMRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I++ + +        INP II      S+  EGCLSIP+    V+R+  +TVRY D   +
Sbjct: 65  IEIDEESGH---FELINPVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A G LA   QHE+DHLNG LFID +
Sbjct: 121 EMEVTAYGYLARAFQHEIDHLNGELFIDKM 150


>gi|254720523|ref|ZP_05182334.1| peptide deformylase [Brucella sp. 83/13]
 gi|265985555|ref|ZP_06098290.1| peptide deformylase-like protein [Brucella sp. 83/13]
 gi|306838109|ref|ZP_07470966.1| peptide deformylase [Brucella sp. NF 2653]
 gi|264664147|gb|EEZ34408.1| peptide deformylase-like protein [Brucella sp. 83/13]
 gi|306406846|gb|EFM63068.1| peptide deformylase [Brucella sp. NF 2653]
          Length = 164

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 98/165 (59%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   + D+  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L        P  +INP+I+   ++   +QEG +S+P    +V+R A I + Y D +  
Sbjct: 61  LELD---RTTGPKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLCYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162


>gi|163841093|ref|YP_001625498.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
 gi|162954569|gb|ABY24084.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
          Length = 189

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 80/147 (54%), Gaps = 11/147 (7%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV---LYRLVVIDLQ 64
           I  DP+LR V+ P+ +   ++  LI +M E M   DG+GLAA Q+GV   ++   + +L 
Sbjct: 8   IMGDPVLRTVAEPVTEFGPELAKLIADMFETMDDVDGVGLAAPQVGVSKQIFTYRIGELS 67

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            H         INP +     +     EGCLS+P     V+R     VR MD N    +I
Sbjct: 68  GH--------VINPVLENGEANQPSGAEGCLSVPGLGYAVERKQTSRVRGMDMNGNPVLI 119

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
            ADG+LA C+QHE DHLNG LFID L+
Sbjct: 120 EADGMLARCMQHETDHLNGKLFIDRLT 146


>gi|317490610|ref|ZP_07949082.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|316910286|gb|EFV31923.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
          Length = 180

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 81/150 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+PIL ++  P +  +  +  L   M + MY  DG G+AA Q+GV  RLVVID   
Sbjct: 4   IVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVIDCDQ 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               ++P+V +NP ++    D  V  EGCLS P     + R  F  VRY D + +   I 
Sbjct: 64  DEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEEWEIE 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +GLL  CLQHELDHL+GI   +    + R
Sbjct: 124 GEGLLGRCLQHELDHLDGITMFERCDPMTR 153


>gi|317472516|ref|ZP_07931837.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
 gi|316900030|gb|EFV22023.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
          Length = 157

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 5/147 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ S+ I+++ S  M LI++M + MY   G+GLAA Q+G+L RLVVID     +  
Sbjct: 11  DEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVVID----TYEG 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INPKI+   D   +  EGCLS+P   A VKR   +    +D +     +  +GLL
Sbjct: 67  QPLVLINPKIVE-KDGEQIGDEGCLSLPGKVAVVKRPNHVVCEALDQDMNPIRVEGEGLL 125

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDM 157
           A  + HELDHL+G+L+ D      RD+
Sbjct: 126 ARAICHELDHLDGVLYPDVAEEPVRDV 152


>gi|300087750|ref|YP_003758272.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527483|gb|ADJ25951.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 174

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 11/163 (6%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           I PDP+LR  S+ I  ++  I  L+D+M+E M + +G GLAA Q+GV  R +VI + +  
Sbjct: 8   IHPDPVLRIKSKKIPVVDRSIRELVDDMVETMQTNNGCGLAAPQVGVSLRCIVIGMPE-- 65

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
             ++P   INP+I+    +  V +E CLSIP   A+V RS  + V+ +  + +   I   
Sbjct: 66  --QDPFTIINPEIVKRRGE-RVIEEACLSIPGVGAEVTRSLEVIVKGIGRDGKPLRIKGH 122

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            LLA  L+HE+DHLNG+LFID +         +K+ K+ Q+ D
Sbjct: 123 DLLAQALEHEIDHLNGLLFIDRVDS------QEKLYKITQISD 159


>gi|313207141|ref|YP_004046318.1| peptide deformylase [Riemerella anatipestifer DSM 15868]
 gi|312446457|gb|ADQ82812.1| peptide deformylase [Riemerella anatipestifer DSM 15868]
 gi|315022461|gb|EFT35488.1| peptide deformylase [Riemerella anatipestifer RA-YM]
 gi|325335421|gb|ADZ11695.1| N-formylmethionyl-tRNA deformylase [Riemerella anatipestifer RA-GD]
          Length = 190

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 90/159 (56%), Gaps = 13/159 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  + DP+LR+  + I     ++  LI NM E M    GIGLAA QIG+  RL ++D++
Sbjct: 4   PIRAYGDPVLRKKGQDITPDYPNLKELIQNMFETMEGAHGIGLAAPQIGLDIRLFIVDVR 63

Query: 65  DHAHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             A  ++ +           VFIN KI+  + +   + EGCLSIP+ R DVKR   IT+ 
Sbjct: 64  PLAEDEDYLDIADELKDFRKVFINAKILEETGEEWKFNEGCLSIPEVREDVKRKDTITIE 123

Query: 114 YMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y D +  +H   Y+D + A  +QHE DH+ GILF D LS
Sbjct: 124 YYDEDFKKHTETYSD-IRARVIQHEYDHIEGILFTDKLS 161


>gi|254695522|ref|ZP_05157350.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|261215912|ref|ZP_05930193.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260917519|gb|EEX84380.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 164

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 99/165 (60%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +Q G +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRAA---GPKIYINPEIVWACEEKIRHQVGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162


>gi|229826165|ref|ZP_04452234.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC
           49176]
 gi|229789035|gb|EEP25149.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC
           49176]
          Length = 175

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 3/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL + +R I++ +  I  LID+MLE MY  DG+GLAA Q+GVL RL V
Sbjct: 1   MALRNIRIVGDEILNKRAREIKENSDKIQTLIDDMLETMYDADGVGLAAPQVGVLKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R  P VFINP+I+  S +     EGCLS+P     V R  ++ ++ ++   +
Sbjct: 61  IDCSE--DRNEPFVFINPEILETSGE-QTGSEGCLSVPGKAGIVTRPEYVKMKALNREFE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             II  +GL A  + HE +HL+G ++ + +
Sbjct: 118 EYIIEGEGLFARAMVHENEHLDGHIYTEKV 147


>gi|219847779|ref|YP_002462212.1| peptide deformylase [Chloroflexus aggregans DSM 9485]
 gi|254767576|sp|B8G5R5|DEF_CHLAD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219542038|gb|ACL23776.1| peptide deformylase [Chloroflexus aggregans DSM 9485]
          Length = 188

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 99/171 (57%), Gaps = 14/171 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-- 70
           IL+   RP++  + ++  L+ +M E M++ +G+GLAA QIG+  +L +I++      +  
Sbjct: 17  ILKMQCRPVKLPDRNLKQLVADMFETMHAANGVGLAAPQIGIPIQLCIIEIPPEYEEQPD 76

Query: 71  ---------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ- 120
                     P V INP+I+  S +  +  EGCLS+P +   V R  ++TV + D + + 
Sbjct: 77  GSLIEVNPAEPYVLINPRIVKTSGEEIMRDEGCLSLPGWYGMVPRQTWVTVEFQDLSGKH 136

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK--RDMITKKMSKLVQLR 169
           H++  ADGLL   +QHE+DHL+GILF + +  L   RD+  ++ ++ V+ +
Sbjct: 137 HRLRRADGLLGWAIQHEVDHLHGILFTERIRDLSTLRDITKEREAQPVEAK 187


>gi|259417291|ref|ZP_05741210.1| peptide deformylase [Silicibacter sp. TrichCH4B]
 gi|259346197|gb|EEW58011.1| peptide deformylase [Silicibacter sp. TrichCH4B]
          Length = 165

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 97/169 (57%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +I  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTTRTCLPWPDKRLRTAATEVSEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S +   ++E   ++P   A +KR   +TVR++  N  
Sbjct: 61  VD--GSTERGRAVRLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFL--NED 116

Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I   D  G+ AT +QH++DHLNG ++ D+LS++KRDM+ KK  K  +
Sbjct: 117 GVIDRRDFVGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLIKKARKFAR 165


>gi|306820768|ref|ZP_07454393.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551158|gb|EFM39124.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 166

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 88/157 (56%), Gaps = 9/157 (5%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR-------- 57
           L I  DP+LR+VSR + +++  I  LI++M++ M   DG+GLAA Q+GVL R        
Sbjct: 6   LRIDGDPLLRKVSREVTELSDKIRLLIEDMMDTMTENDGVGLAAPQVGVLKRVIVVDVSD 65

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +    L+D      P+  INP II   D   V QEGCLS+P+   DVKR + I V+  + 
Sbjct: 66  VDPEVLKDENAPDEPIALINPVIIE-KDGEEVGQEGCLSVPNLTGDVKRPSRIVVKAKNE 124

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             +  +  A    A  L HE+DHLNG+L+ID    L+
Sbjct: 125 KFEDVVFEAKHFFARVLCHEIDHLNGVLYIDKAENLR 161


>gi|319760357|ref|YP_004124295.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039071|gb|ADV33621.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF]
          Length = 168

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 3/160 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR+ ++ + KI+     +I +M + MY+  GIGLAA Q+ +  +++VIDL  +  
Sbjct: 9   YPDKRLRKTAKFVSKISKHTKRIIFDMFDTMYAQQGIGLAATQVDIDQQIIVIDLYQNIT 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           ++  +VFINP II          EGCLSIP  +  + RS  I VR ++ +     I A  
Sbjct: 69  QR--LVFINPIIIKKIGIIHTV-EGCLSIPKIKESIPRSKQIIVRSLNQDGNIFEITATD 125

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LL+ C+QHE+DHL G LFID+LS LK   I KK+ K  +L
Sbjct: 126 LLSVCIQHEIDHLLGKLFIDYLSPLKIKRINKKIQKWTKL 165


>gi|99082418|ref|YP_614572.1| formylmethionine deformylase [Ruegeria sp. TM1040]
 gi|99038698|gb|ABF65310.1| formylmethionine deformylase [Ruegeria sp. TM1040]
          Length = 165

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +I  +  +M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTTRTCLPWPDKRLRTKAAEVTEITDEIRAIWVDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D    + R   +   NP+I+  S +   ++E   ++P   A +KR   +TVR++  N  
Sbjct: 61  VD--GSSERGRAVRLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFL--NED 116

Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I   D  G+ AT +QH++DHLNG ++ DHLS++KRDM+ KK  KL +
Sbjct: 117 GVIDRRDFVGIEATSVQHQIDHLNGKMYFDHLSKVKRDMLVKKARKLAR 165


>gi|325831341|ref|ZP_08164595.1| peptide deformylase [Eggerthella sp. HGA1]
 gi|325486595|gb|EGC89043.1| peptide deformylase [Eggerthella sp. HGA1]
          Length = 183

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 81/150 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+PIL ++  P +  +  +  L   M + MY  DG G+AA Q+GV  RLVVID   
Sbjct: 7   IVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVIDCDQ 66

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               ++P+V +NP ++    D  V  EGCLS P     + R  F  VRY D + +   I 
Sbjct: 67  DEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEEWEIE 126

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +GLL  CLQHELDHL+GI   +    + R
Sbjct: 127 GEGLLGRCLQHELDHLDGITMFERCDPMTR 156


>gi|126699364|ref|YP_001088261.1| peptide deformylase 1 [Clostridium difficile 630]
 gi|254975393|ref|ZP_05271865.1| peptide deformylase 1 [Clostridium difficile QCD-66c26]
 gi|255092782|ref|ZP_05322260.1| peptide deformylase 1 [Clostridium difficile CIP 107932]
 gi|255100892|ref|ZP_05329869.1| peptide deformylase 1 [Clostridium difficile QCD-63q42]
 gi|255314522|ref|ZP_05356105.1| peptide deformylase 1 [Clostridium difficile QCD-76w55]
 gi|255517197|ref|ZP_05384873.1| peptide deformylase 1 [Clostridium difficile QCD-97b34]
 gi|255650303|ref|ZP_05397205.1| peptide deformylase 1 [Clostridium difficile QCD-37x79]
 gi|255655776|ref|ZP_05401185.1| peptide deformylase 1 [Clostridium difficile QCD-23m63]
 gi|260683417|ref|YP_003214702.1| peptide deformylase 1 [Clostridium difficile CD196]
 gi|260687013|ref|YP_003218146.1| peptide deformylase 1 [Clostridium difficile R20291]
 gi|296450989|ref|ZP_06892736.1| peptide deformylase 1 [Clostridium difficile NAP08]
 gi|296879045|ref|ZP_06903041.1| peptide deformylase 1 [Clostridium difficile NAP07]
 gi|306520272|ref|ZP_07406619.1| peptide deformylase [Clostridium difficile QCD-32g58]
 gi|115250801|emb|CAJ68625.1| Peptide deformylase 1 (PDF 1) (Polypeptide deformylase 1)
           [Clostridium difficile]
 gi|260209580|emb|CBA63212.1| peptide deformylase 1 [Clostridium difficile CD196]
 gi|260213029|emb|CBE04369.1| peptide deformylase 1 [Clostridium difficile R20291]
 gi|296260207|gb|EFH07055.1| peptide deformylase 1 [Clostridium difficile NAP08]
 gi|296429918|gb|EFH15769.1| peptide deformylase 1 [Clostridium difficile NAP07]
          Length = 151

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +  F D ILR+ S+ +E +++ I  ++++M E MY+T +G GLAA Q+GVL RLV
Sbjct: 1   MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   +      +NP+II    +  +  EGCLS P+    +KR   +TV+ ++   
Sbjct: 61  VIDLGEGLIK-----LVNPEIIKQEGE-QIVVEGCLSFPEVWGKLKRPKKVTVQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +   I   G +A CL HE+DHLNGI+F D +
Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145


>gi|118443269|ref|YP_877731.1| peptide deformylase [Clostridium novyi NT]
 gi|118133725|gb|ABK60769.1| peptide deformylase [Clostridium novyi NT]
          Length = 158

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 13/165 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V   + +LRR SR IEKI+ +++ LI ++ + +YS DG+GLAA QIGVL R  +
Sbjct: 1   MAIKNIVTADNQLLRRKSRRIEKIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+D     +P++ +NPKI+     +    EGCLS P Y   V R   + V  M+   +
Sbjct: 61  IDLRDG---NDPLILLNPKILKKIGKYE-DAEGCLSYPGYEGVVIRPRKVIVAGMNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                A GL+A  + HE DHL+G+L++D         + KKM K+
Sbjct: 117 MVQYVATGLMARAICHETDHLDGVLYMD---------LAKKMYKI 152


>gi|293572654|ref|ZP_06683622.1| peptide deformylase [Enterococcus faecium E980]
 gi|291607240|gb|EFF36594.1| peptide deformylase [Enterococcus faecium E980]
          Length = 163

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 92/149 (61%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+R ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ +I
Sbjct: 1   MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIALI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +          INP+II    + S+  EGCLSIP     VKR+  +TVRY D + + 
Sbjct: 61  EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|255306782|ref|ZP_05350953.1| peptide deformylase 1 [Clostridium difficile ATCC 43255]
          Length = 151

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +  F D ILR+ S+ +E +++ I  ++++M E MY+T +G GLAA Q+GVL RLV
Sbjct: 1   MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   +      +NP+II    +  +  EGCLS P+    +KR   +TV+ ++   
Sbjct: 61  VIDLGEGLIK-----LVNPEIIEQEGE-QIVVEGCLSFPEVWGKLKRPKKVTVQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +   I   G +A CL HE+DHLNGI+F D +
Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145


>gi|291547147|emb|CBL20255.1| peptide deformylase [Ruminococcus sp. SR1/5]
          Length = 157

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L + SR ++K+   I  LI +ML+ MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MALRTIRVQGDSVLTKKSRTVDKMTPRIGELITDMLDTMYDAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S +     EGCLS+P     V R  ++ V+  D N  
Sbjct: 61  IDVGE-----GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAFDVNMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            QI   +GLLA    HE+DHL+G ++ +
Sbjct: 115 EQIYEGEGLLARAFCHEIDHLDGKMYTE 142


>gi|256845417|ref|ZP_05550875.1| peptide deformylase [Fusobacterium sp. 3_1_36A2]
 gi|256718976|gb|EEU32531.1| peptide deformylase [Fusobacterium sp. 3_1_36A2]
          Length = 174

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 99/159 (62%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ V D  + 
Sbjct: 8   YGEDVLKQIAKEVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIFVCDDGNG 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             RK     INP ++  +++   ++EGCLS+P     V+R   + ++Y++ N +     A
Sbjct: 68  VVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENGEEIEEIA 123

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +  LA  +QHE DHL+GILFI+ +S + + +I KK++ +
Sbjct: 124 ENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANM 162


>gi|238916653|ref|YP_002930170.1| hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750]
 gi|238872013|gb|ACR71723.1| Hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750]
          Length = 171

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 86/143 (60%), Gaps = 6/143 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D ILR  ++ I ++   I  LID+M + MY  +G+GLAA Q+G+  RLVVID  D   
Sbjct: 23  LGDDILRAKAKEITEMTPRIEELIDDMFDTMYEANGVGLAAPQVGIRKRLVVIDCGD--- 79

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
             +P+V INP ++  S   +   EGCLS+P    +V R  +  V+ ++ N +  I+  + 
Sbjct: 80  --DPIVLINPVVLETSGSQTGL-EGCLSVPGKTGEVTRPNYAKVKALNENMEEIIVEGEE 136

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA CL HE+DHL+GI+++D + 
Sbjct: 137 LLARCLLHEIDHLDGIMYVDKVE 159


>gi|167747883|ref|ZP_02420010.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662]
 gi|167652705|gb|EDR96834.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662]
          Length = 157

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 5/147 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ S+ I+++ S  M LI++M + MY   G+GLAA Q+G+L RLVVID     +  
Sbjct: 11  DEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVVID----TYEG 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INPKI+   D   +  EGCLS+P   A VKR   +    +D +     +  +GLL
Sbjct: 67  QPLVLINPKIVE-KDGEQIGDEGCLSLPGKVAVVKRPNHVVCEALDRDMNPIRVEGEGLL 125

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDM 157
           A  + HELDHL+G+L+ D      RD+
Sbjct: 126 ARAICHELDHLDGVLYPDVAEEPVRDV 152


>gi|219685342|ref|ZP_03540161.1| peptide deformylase [Borrelia garinii Far04]
 gi|219673115|gb|EED30135.1| peptide deformylase [Borrelia garinii Far04]
          Length = 165

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+    
Sbjct: 3   MVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVRENR 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP II  S + + Y+EGCLSIP    D+ R   I V + D N +   I 
Sbjct: 63  MAR---PLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNGILFID+   R+K  ++   M +
Sbjct: 120 DSDFLARIIQHEMDHLNGILFIDYYEERIKNKLLKPYMRE 159


>gi|34762409|ref|ZP_00143410.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|237742081|ref|ZP_04572562.1| polypeptide deformylase [Fusobacterium sp. 4_1_13]
 gi|294785287|ref|ZP_06750575.1| peptide deformylase [Fusobacterium sp. 3_1_27]
 gi|27887934|gb|EAA25001.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|229429729|gb|EEO39941.1| polypeptide deformylase [Fusobacterium sp. 4_1_13]
 gi|294487001|gb|EFG34363.1| peptide deformylase [Fusobacterium sp. 3_1_27]
          Length = 174

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 99/159 (62%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ V D  + 
Sbjct: 8   YGEDVLKQIAKKVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIFVCDDGNG 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             RK     INP ++  +++   ++EGCLS+P     V+R   + ++Y++ N +     A
Sbjct: 68  VVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENGEEIEEIA 123

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +  LA  +QHE DHL+GILFI+ +S + + +I KK++ +
Sbjct: 124 ENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANM 162


>gi|307264799|ref|ZP_07546361.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920057|gb|EFN50269.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 159

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 91/143 (63%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L++ ++P+ +IN  I+ ++++M + MY  DG+GLAA QIGVL RLVVID+ +     
Sbjct: 11  DEVLKKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVVIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+ + +   V  EGCLSIP    +VKR   + V+Y+D   + + I  + LL
Sbjct: 66  GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGKEREIEGEDLL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  L HE+DHLNG+LFID   R 
Sbjct: 125 ARALCHEIDHLNGVLFIDKAIRF 147


>gi|219684773|ref|ZP_03539715.1| peptide deformylase [Borrelia garinii PBr]
 gi|219671718|gb|EED28773.1| peptide deformylase [Borrelia garinii PBr]
          Length = 165

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+    
Sbjct: 3   MVFYPNDLLRVKTKQIDSIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVRENR 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP II  S + + Y+EGCLSIP    D+ R   I V + D N +   I 
Sbjct: 63  MAK---PLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNGILFID+   R+K  ++   M +
Sbjct: 120 DSDFLARIIQHEMDHLNGILFIDYYEERIKNKLLKPYMRE 159


>gi|89070115|ref|ZP_01157445.1| peptide deformylase [Oceanicola granulosus HTCC2516]
 gi|89044336|gb|EAR50479.1| peptide deformylase [Oceanicola granulosus HTCC2516]
          Length = 162

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 93/163 (57%), Gaps = 2/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++P   LR  + P+ +++  +  + D M+E M +  G GLAA Q+G+  RL V+
Sbjct: 1   MSRPFVMWPHKALRTRAAPVAQVDDAVRAIWDEMVEAMEAMPGYGLAAPQLGIGLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      R   +   NP+++  S +   ++E   ++P   A +KR   +TVR+++   + 
Sbjct: 61  DAS--TARGKAVRLANPELLHASVELREHEEASPNLPGVGAALKRPRAVTVRFLNAAGET 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +     GL AT +QH+LDHL+G ++ D LSR +R+M+ K+  K
Sbjct: 119 EERDFVGLWATSVQHQLDHLDGRMYFDRLSRTRREMLLKRARK 161


>gi|222104825|ref|YP_002539314.1| peptide deformylase [Escherichia coli]
 gi|8571125|gb|AAF76758.1|AF218073_7 unknown [Escherichia coli]
 gi|221589252|gb|ACM18249.1| peptide deformylase [Escherichia coli]
          Length = 150

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 86/126 (68%), Gaps = 3/126 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++VID+ +  +
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEKGIGLAATQVDIHQRIIVIDVSE--N 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 125

Query: 129 LLATCL 134
           LLA C+
Sbjct: 126 LLAICI 131


>gi|297181739|gb|ADI17920.1| N-formylmethionyl-tRNA deformylase [uncultured Desulfobacterales
           bacterium HF0200_07G10]
          Length = 174

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 100/168 (59%), Gaps = 5/168 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ 64
           ++++PD  L +VSRP+++ + DI   + ++ E   S  G +G+AA Q+G   R++++D+ 
Sbjct: 6   ILVYPDKRLTQVSRPVDEFSRDIKTFVKDLEETFRSYPGCVGIAAPQVGRFERIILVDVS 65

Query: 65  DHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                 N   +V INPKI ++  + S+ +EGCLS+PDY   V+R+  I +  ++ N   Q
Sbjct: 66  QKPQHVNHGFLVLINPKITSYEGN-SLGREGCLSVPDYTGKVERAKSIALEALNENGDKQ 124

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +   G  A  +QHE+DHL+G LFID L   +R+ + K++     L++
Sbjct: 125 ELKLSGYEARAVQHEIDHLDGKLFIDRLVG-RRNSLNKRIELSTDLKN 171


>gi|281423116|ref|ZP_06254029.1| peptide deformylase [Prevotella oris F0302]
 gi|281402452|gb|EFB33283.1| peptide deformylase [Prevotella oris F0302]
          Length = 187

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 7/170 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+  P+LR+V++ I      +  LI +M E + +++GIGLAA QIG   R+VVIDL 
Sbjct: 4   PIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVIDLD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               D+   K     FIN  I+ F ++      +EGCLS+P     V R   I V+Y D 
Sbjct: 64  VLSDDYPEYKGLRKAFINAHILEFDEESPKETMEEGCLSLPGLSEKVTRPTRIHVKYQDE 123

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + DG LA  +QHE DHL G +FID +  L++ MI  K+  +++
Sbjct: 124 DFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMK 173


>gi|257438995|ref|ZP_05614750.1| peptide deformylase [Faecalibacterium prausnitzii A2-165]
 gi|257198580|gb|EEU96864.1| peptide deformylase [Faecalibacterium prausnitzii A2-165]
          Length = 178

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G+L R+ V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRIFV 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P       + F+NP+I+  S+D     EGCLS P +   V R   + VR
Sbjct: 61  VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             D N     + A+ LLA C+QHE DHL+GI  ++       D    K +
Sbjct: 121 AQDRNGNWFELEAENLLARCIQHENDHLDGITIMESSEYFYEDTEEGKKA 170


>gi|328951365|ref|YP_004368700.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
 gi|328451689|gb|AEB12590.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
          Length = 197

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 15/178 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++ DPILRR + P+E  +  I  L +N+ E M+   G+GLAA Q+G+  RL V    
Sbjct: 9   PIRLYGDPILRRRALPVEAFDG-IPELAENLFETMFEAGGVGLAAPQVGISRRLFVAAEY 67

Query: 65  D-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITV 112
                        +  K   V +NP +IT+ +   V  EGCLS+P  Y  +V R   + V
Sbjct: 68  LDEEEEAEDTPLKSRVKQLYVMVNP-VITYREGHQVGTEGCLSLPGLYSDEVPRDLRVRV 126

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQLR 169
           +Y D   + +++ A+G LA  +QHELDHL G LFID L    +R  I +  ++L +++
Sbjct: 127 QYQDEYGEPKVLEAEGYLARVIQHELDHLEGKLFIDRLPPEARRAFINEHRAELAEMQ 184


>gi|224534861|ref|ZP_03675430.1| peptide deformylase [Borrelia spielmanii A14S]
 gi|224513801|gb|EEF84126.1| peptide deformylase [Borrelia spielmanii A14S]
          Length = 165

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+    
Sbjct: 3   MVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISSGVGLAAPQVGLDLSLFVVRENK 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP I   S + + Y+EGCLSIP    D+ R   I V + D N +   I 
Sbjct: 63  MAK---PLVFINPLITETSYELNSYKEGCLSIPGVYYDLMRPKTIVVNFYDENGKSFTIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNG+LFID+   R+K+ ++   M +
Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEERIKKKLLKPYMKE 159


>gi|223994725|ref|XP_002287046.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335]
 gi|220978361|gb|EED96687.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335]
          Length = 180

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 6/165 (3%)

Query: 9   FPDPILRRVSRPIEKI-----NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P P LR  +  I +       S+I  +   M  VMY+T+G GLAA Q+G+  RL+V + 
Sbjct: 8   YPHPALRAPNAEITEEELTGPGSEISRIAKEMFLVMYATNGAGLAAPQVGINKRLMVYNE 67

Query: 64  QDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              + R    ++ +NPKI+ FS    + QEGCLS P+   DV+RS +I V   +   +  
Sbjct: 68  SGDSKRWMQEVIMVNPKIVEFSSATDIEQEGCLSFPEMGGDVQRSKWIKVEAQNLKGKKI 127

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                G  A   QHE DHL+G++++D LS   R  +  ++ +LV+
Sbjct: 128 KKKFTGWEARIFQHEYDHLDGVVYVDRLSEEGRKEVQGRLDELVE 172


>gi|329954514|ref|ZP_08295605.1| peptide deformylase [Bacteroides clarus YIT 12056]
 gi|328527482|gb|EGF54479.1| peptide deformylase [Bacteroides clarus YIT 12056]
          Length = 184

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+VV+DL 
Sbjct: 4   PVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVVDLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D+   K     +IN  I+  S +    +EGCLS+P     VKR   I V+Y+D + 
Sbjct: 64  VLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLDEDL 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++
Sbjct: 124 VEHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNAMLK 171


>gi|300861509|ref|ZP_07107593.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|312953219|ref|ZP_07772065.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|295114433|emb|CBL33070.1| peptide deformylase [Enterococcus sp. 7L76]
 gi|300848970|gb|EFK76723.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|310628836|gb|EFQ12119.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|315031809|gb|EFT43741.1| peptide deformylase [Enterococcus faecalis TX0017]
 gi|315152788|gb|EFT96804.1| peptide deformylase [Enterococcus faecalis TX0031]
 gi|315154709|gb|EFT98725.1| peptide deformylase [Enterococcus faecalis TX0043]
 gi|323479052|gb|ADX78491.1| peptide deformylase [Enterococcus faecalis 62]
          Length = 164

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 4/149 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 1   MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ + +        INP II      S+  EGCLSIP+    V+R+  +TVRY D   + 
Sbjct: 61  EIDEESGH---FELINPVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHLNG LFID +
Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145


>gi|218132889|ref|ZP_03461693.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991762|gb|EEC57766.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC
           43243]
          Length = 159

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 83/141 (58%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+ ++ + ++   I  LID+M + MY  +G GLAA Q+G+  R+VVID  D     
Sbjct: 14  DEILRKTAKEVTEMTPKIRELIDDMFDTMYEANGCGLAAPQVGIRKRIVVIDCGD----- 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +P+V INP I+  S +     EGCLS+P     V R  +  V+  D +    I+  + LL
Sbjct: 69  DPIVLINPVILETSGE-QTGSEGCLSVPGKCGTVTRPNYAKVKAFDEDMNEYIVEGEELL 127

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A CL HE+DHL+GI+++D + 
Sbjct: 128 ARCLCHEIDHLDGIMYVDKVE 148


>gi|315640287|ref|ZP_07895404.1| peptide deformylase [Enterococcus italicus DSM 15952]
 gi|315483949|gb|EFU74428.1| peptide deformylase [Enterococcus italicus DSM 15952]
          Length = 163

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 92/147 (62%), Gaps = 5/147 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LR+ ++ I+++  +++ L+D+M E M + DG+G+AA QIG   ++ V+
Sbjct: 1   MRYPIIIQPDEQLRKPNQEIQELTDELVYLLDDMYETMLAHDGVGIAAPQIGKNLQMAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ ++    +    INP+II      SV+ EGCLSIP     V+R+  ITVRY D     
Sbjct: 61  EVDEN----DRFDLINPQIIDRKGK-SVFVEGCLSIPHVFGTVERAEEITVRYYDREGDE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
             + A G LA  +QHE+DHLNG+LF D
Sbjct: 116 MEVTAYGYLARAIQHEIDHLNGVLFTD 142


>gi|313905223|ref|ZP_07838591.1| peptide deformylase [Eubacterium cellulosolvens 6]
 gi|313469976|gb|EFR65310.1| peptide deformylase [Eubacterium cellulosolvens 6]
          Length = 173

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 6/145 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+L +V +P+ K++  +  L+ +M + MY   G+GLAA Q+GVL R+ VID+      +
Sbjct: 11  DPVLEKVCKPVAKMSLRMKILVKDMFDTMYDACGVGLAAPQVGVLRRIAVIDVDG----E 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +P VF+NP+II  S +     EGCLSIP     V R  ++ V+  D N +   + A GLL
Sbjct: 67  HPYVFVNPEIIEMSGE-QTGDEGCLSIPGMTGTVTRPDYVKVKAFDINMEPFELEATGLL 125

Query: 131 ATCLQHELDHLNGILFIDHL-SRLK 154
           A    HE +HL+G+L+  H+  RL+
Sbjct: 126 ARACCHEFEHLDGVLYTCHVQGRLR 150


>gi|159042736|ref|YP_001531530.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
 gi|157910496|gb|ABV91929.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
          Length = 168

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 6/168 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG----LAAVQIGVLYRLV 59
           +P + +PD  LR  + P+ +I  +I  + D+M++ M +  G+G    LAA QIGV+  L 
Sbjct: 3   RPFLSWPDARLRTPAAPVAEITDEIRTVWDDMIDTMEAMPGMGPGAGLAAPQIGVMQALA 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  +   R   +   NP+++  S     ++E   ++P   A + R   +TVR++D N 
Sbjct: 63  VVDASEE--RGRAIRMANPQVLHASAQLRSHEEASPNLPGVFAKIDRPRAVTVRFLDANG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             +     GL AT +QH++DHL G ++ D LS+ KRDM+ +K  KL +
Sbjct: 121 AVKEQDFVGLWATSVQHQIDHLAGRMYFDRLSKTKRDMLLRKARKLAR 168


>gi|189466358|ref|ZP_03015143.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM
           17393]
 gi|189434622|gb|EDV03607.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM
           17393]
          Length = 184

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV----LYRLVV 60
           P+ ++  P+LR+V+  I     ++  LI NM E M + +G+GLAA Q+G+    +   + 
Sbjct: 4   PIYVYGQPVLRKVAEDIAPDYPNLKELIANMFETMDNAEGVGLAAPQVGLPVRVVVVDLD 63

Query: 61  IDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +  +D+   K     +INP I+  S +    +EGCLS+P     VKR   I V YMD + 
Sbjct: 64  VLSEDYPEYKGFRKAYINPHILEVSGEEVSMEEGCLSLPGIHEAVKRGNKIHVTYMDEDM 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++
Sbjct: 124 VEHDEIVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLK 171


>gi|116252298|ref|YP_768136.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256946|emb|CAK08040.1| putative peptide deformylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 164

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 88/161 (54%), Gaps = 3/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P++ +P P L+ V  P+   +S +  L +++L  M +  G+G+ A  IGV  R+ V++L
Sbjct: 4   RPILRYPHPGLKTVCAPVTVFDSSLTALAEDLLATMRAAPGVGITAAHIGVFSRVTVLEL 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D A      ++ NP I  FS +   + EG +S+P    +V R   I  RY D       
Sbjct: 64  -DKA--DGVRLYFNPHITWFSKETMDHTEGSVSMPGATDEVTRPRAIRFRYQDAEGAVHE 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 121 DGAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161


>gi|254712281|ref|ZP_05174092.1| peptide deformylase [Brucella ceti M644/93/1]
 gi|254715352|ref|ZP_05177163.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261217080|ref|ZP_05931361.1| peptide deformylase-like protein [Brucella ceti M13/05/1]
 gi|261319950|ref|ZP_05959147.1| peptide deformylase-like protein [Brucella ceti M644/93/1]
 gi|260922169|gb|EEX88737.1| peptide deformylase-like protein [Brucella ceti M13/05/1]
 gi|261292640|gb|EEX96136.1| peptide deformylase-like protein [Brucella ceti M644/93/1]
          Length = 164

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 98/165 (59%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++I P+I+   ++   +QEG +S+P     V+R A I +RY D +  
Sbjct: 61  LELDRAA---GPKIYIYPEIVWACEEKIRHQEGSVSMPGVVDKVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKL 162


>gi|225018470|ref|ZP_03707662.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum
           DSM 5476]
 gi|224948779|gb|EEG29988.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum
           DSM 5476]
          Length = 150

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + L    DPILR+  R +E+++  I  L+D++ + MY+T+ G GLA  Q+G+L RLV
Sbjct: 1   MAIRNLRFTDDPILRKRCREVEQVDDKIRTLLDDLADTMYNTENGGGLATCQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+         +  +NPKII  S       EGCLS P+    V R   +TV  +D N 
Sbjct: 61  VIDVG-----TGLLKLVNPKIIETSG-LQERLEGCLSFPNQWGKVLRPQKVTVEALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  II  +  LA CL HE+DHL+G++F+D +
Sbjct: 115 EEIIITGEDQLAQCLCHEIDHLDGVVFVDKV 145


>gi|255527719|ref|ZP_05394575.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296187196|ref|ZP_06855593.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255508594|gb|EET84978.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296048231|gb|EFG87668.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 150

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 87/149 (58%), Gaps = 7/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ SR +E ++  I  ++++M E MY+T+ G GLA  Q+G+L RLV
Sbjct: 1   MALRQIRLFGDEILRKKSREVEVVDDKIRQILNDMAETMYNTENGGGLAGPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D+     +      +NPKII       V  EGCLS P+    +KR A + V+ ++ N 
Sbjct: 61  VMDMGGGLIK-----LVNPKIIEQEGTQEVI-EGCLSSPNTWGKLKRPAKVKVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           +  I+   G LA C  HE+DHL GILF D
Sbjct: 115 EEIILTGTGSLAKCFCHEIDHLEGILFTD 143


>gi|145345192|ref|XP_001417104.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901]
 gi|144577330|gb|ABO95397.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901]
          Length = 240

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 2/166 (1%)

Query: 4   KPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +PL I  +P   LR  + P+E  + ++  L   M ++MY T G GLAA Q+GV YR++V 
Sbjct: 64  EPLAIAKYPAKCLRAKNAPVETFDKNLERLSKAMFKIMYETVGCGLAAPQVGVNYRMMVY 123

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +      +   +V  NP+I+ FS +  +++EGCLS P   ADV+R   + +   +   + 
Sbjct: 124 NEAGEPGQGREVVLCNPEIVKFSKEKDLFEEGCLSFPKMYADVERPIGVQIEAQNLKGKK 183

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             +  +G  A   QHE DHL+G+L+ D +S   R  +   +   V+
Sbjct: 184 FKMTLEGFEARVFQHEYDHLDGVLYHDRMSPEVRASVQSTLDGFVE 229


>gi|307298449|ref|ZP_07578252.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915614|gb|EFN45998.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 163

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 5/157 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +PILR VS  +E  + ++   ++ + + MY  DG+GLAA Q+ +  RL V D  D     
Sbjct: 8   NPILRDVSEKVEVFDDELRQFVNELSKTMYVEDGVGLAAPQVAISRRLFVYDPGDGLR-- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              V +NP+I+  SD+    +EGCLSIP   ADV R A + +RY D    +         
Sbjct: 66  ---VVVNPEILFRSDEKVKIEEGCLSIPGIYADVVRPASVRIRYQDEYGHYHEDDLTDYP 122

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           A  +QHE DHL+GILF+D+LS  KR ++  K+ ++++
Sbjct: 123 ARIVQHETDHLDGILFVDYLSSAKRAILKPKLDQIIK 159


>gi|126733796|ref|ZP_01749543.1| Peptide deformylase [Roseobacter sp. CCS2]
 gi|126716662|gb|EBA13526.1| Peptide deformylase [Roseobacter sp. CCS2]
          Length = 153

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 2/136 (1%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+L   + P+E  ++ +  L+ +M E MY   G GLAA Q+GV  R+ V+D        
Sbjct: 11  DPVLLETAAPVEAFDASLATLVRDMFETMYDAPGRGLAAPQVGVSRRVFVVDTTWKEADP 70

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQHQIIYADGL 129
            PM+F+NP+I   +++ ++  E CLSIPD   DV R  ++ +++ D + A H+  + D +
Sbjct: 71  APMIFVNPQITAHAEEEALGTEACLSIPDQSFDVSRPVWVALKWQDLDGAWHEGRFTD-V 129

Query: 130 LATCLQHELDHLNGIL 145
            A C+ HE DHL G+L
Sbjct: 130 DAVCICHEFDHLEGLL 145


>gi|328947001|ref|YP_004364338.1| peptide deformylase [Treponema succinifaciens DSM 2489]
 gi|328447325|gb|AEB13041.1| Peptide deformylase [Treponema succinifaciens DSM 2489]
          Length = 192

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 86/142 (60%), Gaps = 7/142 (4%)

Query: 11  DPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + +LR+   P+E  ++N ++   ++ M E M S DG+GLAA Q+G+  R  V+   D+  
Sbjct: 8   EDVLRQKCVPVESNEVNDELRATLNEMFETMISADGVGLAAPQVGISKRFFVVISDDNVR 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII-YAD 127
           R    VFINP+II  S + S Y+EGCLS+P     + R   I+V  +D N +  ++   D
Sbjct: 68  R----VFINPEIIKTSAENSEYEEGCLSLPGVSEKIVRPVKISVSAIDENGKRFVLDDVD 123

Query: 128 GLLATCLQHELDHLNGILFIDH 149
           GLLA  +QHE DHLNGIL+ID 
Sbjct: 124 GLLARIIQHENDHLNGILYIDR 145


>gi|302346308|ref|YP_003814606.1| peptide deformylase [Prevotella melaninogenica ATCC 25845]
 gi|302150701|gb|ADK96962.1| peptide deformylase [Prevotella melaninogenica ATCC 25845]
          Length = 186

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 93/174 (53%), Gaps = 16/174 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61
           P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VV+   
Sbjct: 4   PIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVVDLD 63

Query: 62  -------DLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113
                  + +D+ H      FIN  I+ + D +    +EGCLS+P     V R+  + V+
Sbjct: 64  VLSDTFPEYKDYRH-----AFINGHILEYDDSETETLEEGCLSLPGVHESVTRAKRVYVK 118

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + D N      + DG LA  +QHE DHL G +F D LS  ++ MIT K+  L+Q
Sbjct: 119 WYDENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMITSKLKALLQ 172


>gi|261880357|ref|ZP_06006784.1| peptide deformylase [Prevotella bergensis DSM 17361]
 gi|270332901|gb|EFA43687.1| peptide deformylase [Prevotella bergensis DSM 17361]
          Length = 187

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 100/171 (58%), Gaps = 9/171 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+  +  P+LR+V++ I      +  LID+M E M ++ G+GLAA QIG   R+VVI+L 
Sbjct: 4   PIYTYGHPVLRKVAQDIPTDYPGLSQLIDDMFETMDASSGVGLAAPQIGKSVRVVVINLD 63

Query: 64  ---QDHAHRKN-PMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              +D+    +    +INP II     S+  S+ +EGCLS+P     V R + I V+Y+D
Sbjct: 64  VLKEDYPEYADFRHAYINPHIIEVDKKSEKVSM-EEGCLSVPGLSEKVVRYSRIRVQYLD 122

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              Q    + +G LA  +QHE DHL G++++D ++ L++ +I  K+  ++Q
Sbjct: 123 EELQPHDEWVEGYLARVMQHEFDHLEGVMYVDRITPLRKQLIRNKLKGIMQ 173


>gi|42543585|pdb|1RQC|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543586|pdb|1RQC|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543587|pdb|1RQC|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543588|pdb|1RQC|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543589|pdb|1RQC|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543590|pdb|1RQC|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543591|pdb|1RQC|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543592|pdb|1RQC|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543593|pdb|1RQC|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543594|pdb|1RQC|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
          Length = 185

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V +PDPILRR S  +   + ++  ++    ++ Y + GIGL+A Q+ +  R++V + L 
Sbjct: 5   IVKYPDPILRRRSEEVTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNALY 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +    +N  +FINP I+  S       EGCLS P     V+R + +++ Y D N    + 
Sbjct: 65  EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ +   QHE DHLNG LFID  +++ +  +  K+++L++
Sbjct: 125 ILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 167


>gi|114770092|ref|ZP_01447630.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255]
 gi|114548929|gb|EAU51812.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255]
          Length = 169

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K  + +PD  L      I  I      +  +M + MY+  GIGLAA QIG++  L V
Sbjct: 1   MAIKKFIRYPDKRLSVKCELISSITDKDHEVWKDMFDSMYNMPGIGLAACQIGIMRSLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +  P    NPKI+  S  +   QEG  ++P   A++KR   +TVRY+D N  
Sbjct: 61  VDVGDG--KVEPFEMANPKILYSSGVYIENQEGSPNLPGVWANIKRPRAVTVRYIDKNGN 118

Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              I  D  GL A  +QH++DHLNG +F +HLS  KR M+  K  KL
Sbjct: 119 Q--IERDFVGLWAVSVQHQIDHLNGKMFFEHLSSTKRKMLINKSQKL 163


>gi|254436758|ref|ZP_05050252.1| peptide deformylase [Octadecabacter antarcticus 307]
 gi|198252204|gb|EDY76518.1| peptide deformylase [Octadecabacter antarcticus 307]
          Length = 165

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++  + +P  ILR  +  + +I  DI  L D M++ M +  G+GLAA Q+GV  RL V
Sbjct: 1   MPRRQFIPWPAKILRTPAAEVPEITDDICALWDEMIDAMDAMPGVGLAAPQLGVSLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R   +   NP I+  S +  +++E   ++    A ++R   +TVR+M+    
Sbjct: 61  VDASDK--RGQAIRMANPIILHASHELRLHEEASPNLVGMSASLERPRAVTVRFMNEAGM 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +      GL AT +QH++DHL+G ++ D LSR KRDM+ KK  KL
Sbjct: 119 YDRQDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163


>gi|56698049|ref|YP_168420.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
 gi|56679786|gb|AAV96452.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
          Length = 165

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 95/159 (59%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR  +  + +I  +I  +  +M++ M +  G+GLAA QIGV+ RL V+D    + 
Sbjct: 9   WPDKHLRTRAAEVSEITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAVVD--GSSE 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127
           R   +   NP+I+  S +   + E   ++P   A +KR   +TVR++  N Q Q+   D 
Sbjct: 67  RGRAVRLANPEILHASIELREHDEASPNLPGVSAKLKRPRAVTVRFL--NEQGQVDRRDF 124

Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K  KL
Sbjct: 125 VGIEATSVQHQIDHLNGRMYFDNLSKVKRDMLLRKARKL 163


>gi|310829317|ref|YP_003961674.1| peptide deformylase 1 [Eubacterium limosum KIST612]
 gi|308741051|gb|ADO38711.1| peptide deformylase 1 [Eubacterium limosum KIST612]
          Length = 151

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 81/143 (56%), Gaps = 7/143 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVVIDLQDHA 67
           FPD IL +  RP+E I+   + LI +M E MY     G LAA Q+GVL R+VVID+ +  
Sbjct: 9   FPDDILHKKCRPVETIDKRTLELIKDMTETMYQLPNCGGLAANQVGVLKRVVVIDVGEGL 68

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           ++      +NPKII  ++   +  EGC+S PD    VKR   + V Y     +     AD
Sbjct: 69  YQ-----LVNPKIIE-AEGERIVVEGCMSSPDVWGKVKRPERVVVEYTTPEGEVLQKEAD 122

Query: 128 GLLATCLQHELDHLNGILFIDHL 150
           GLLA C  HELDHL+GI F D +
Sbjct: 123 GLLAKCFCHELDHLDGIFFTDKV 145


>gi|218259650|ref|ZP_03475313.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224966|gb|EEC97616.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii
           DSM 18315]
          Length = 185

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 5/168 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR+ +  +     D+  L+ NM E MY+ DG+GLAA Q+G+  RL+VID  
Sbjct: 4   PVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVIDAD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               D    K      INP  +  S++    +EGCLS+P     V RS  + V+Y+D + 
Sbjct: 64  VMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSVKVRVKYLDEDL 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      +G  A  +QHE +HL G +FID++S ++R +   K++ +++
Sbjct: 124 KEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIK 171


>gi|254449483|ref|ZP_05062920.1| peptide deformylase [Octadecabacter antarcticus 238]
 gi|198263889|gb|EDY88159.1| peptide deformylase [Octadecabacter antarcticus 238]
          Length = 144

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 73/125 (58%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
           + D++ LID++ + MY   G GLAA QIGV  R+ V+D+      ++P  FINP+I   +
Sbjct: 5   DPDLVGLIDDLFDTMYHAKGRGLAAPQIGVTKRVFVVDVTWKEGTRDPRAFINPQITETA 64

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
            D  +  E CLSIPD    V R   I +R+   +   +    DG+LA C+QHELDHLNG 
Sbjct: 65  GDMLIMNEQCLSIPDIPMPVARPERIQLRWTRRDGGLETAVFDGILARCIQHELDHLNGT 124

Query: 145 LFIDH 149
           +  DH
Sbjct: 125 VIFDH 129


>gi|126726108|ref|ZP_01741950.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
 gi|126705312|gb|EBA04403.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
          Length = 165

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 3/162 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P + +PD  LR  +  +  I+ +I  + D+M++ M +  G+GLAA QIGV  RL V+D 
Sbjct: 3   RPTIPWPDQCLRSKANTVGDISDEIRAIWDDMIDTMEAMPGVGLAAPQIGVSLRLCVVDA 62

Query: 64  QDHAHRKNPMVFINPKIITF-SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            D   R   +   +P  +    D+   ++E   ++P   A + R A +TV Y D   +  
Sbjct: 63  SDE--RGQTIRMADPDFVGAQGDELRDHEEASPNLPGVSAKITRPAKVTVEYTDDKGERV 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               +GL AT +QH+LDHLNG ++ D+LS+  RDM+ ++  K
Sbjct: 121 RKTLEGLWATSVQHQLDHLNGRMYFDNLSKTNRDMLLRRAKK 162


>gi|289422300|ref|ZP_06424150.1| peptide deformylase [Peptostreptococcus anaerobius 653-L]
 gi|289157245|gb|EFD05860.1| peptide deformylase [Peptostreptococcus anaerobius 653-L]
          Length = 149

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DP+L + ++ +   N  +  L+D+M + MY+ DG+GLAA Q+G+L R VV
Sbjct: 1   MAIRNVVKMGDPVLNKKAKKVVDFNEKLHTLLDDMADTMYNEDGVGLAAPQVGILRRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+         +  INP+II    + +   EGCLS+ DY A+V R  ++ V+  D N +
Sbjct: 61  VDIG-----TGLIELINPQIIAQEGEQTDV-EGCLSVVDYVAEVTRPNYVKVKAQDRNGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I  +GL+A    HELDHL GILF++ + +
Sbjct: 115 DFEIEGEGLMARAFCHELDHLEGILFVERVEK 146


>gi|297617045|ref|YP_003702204.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144882|gb|ADI01639.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680]
          Length = 153

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 6/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ PDP+LR  + P+   N  ++ L++NM + +Y  +G+GLAA QIGVL R+VV
Sbjct: 1   MAAYQIVVVPDPVLREKALPVTSFNQGLIRLLENMKDSLYEAEGVGLAAPQIGVLRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D       +  INP+I+    + +  +  CLSIP+ R  VKR+  + V  ++   +
Sbjct: 61  FDAGDGL-----VELINPRILEEEGEEAGIEG-CLSIPNTRGLVKRAKRVVVEALNRYGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
           +  I  +GL+A  +QHE+DHL+GILF D 
Sbjct: 115 NIRIEGEGLVARVIQHEIDHLDGILFTDR 143


>gi|218188726|gb|EEC71153.1| hypothetical protein OsI_02992 [Oryza sativa Indica Group]
          Length = 997

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/146 (38%), Positives = 79/146 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 797 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 856

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP +   S    VY+E CLS P   A+V R   + +   D       + 
Sbjct: 857 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 916

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
             GL A   QHE DHL GILF D +S
Sbjct: 917 LSGLSARVFQHEFDHLQGILFFDRMS 942


>gi|160893328|ref|ZP_02074115.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50]
 gi|156865020|gb|EDO58451.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50]
          Length = 153

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D +LR+  +P+ ++   +  LID+M + MY  +G+GLAA Q+G++ R+VV
Sbjct: 1   MATRKIRIDGDSVLRKKCKPVTEMTPRLSQLIDDMFDTMYEANGVGLAAPQVGIVKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    ++P+  INP+II  S +     EGCLS+P     V R   +  + +D +  
Sbjct: 61  IDIGD----EHPLTLINPEIIETSGE-QTGDEGCLSLPGKVGQVTRPMHVVCKALDRDMN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA  + HE DHL GIL+ D + 
Sbjct: 116 EITVTGEGLLARAICHETDHLEGILYKDKVE 146


>gi|150018308|ref|YP_001310562.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
 gi|149904773|gb|ABR35606.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
          Length = 150

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + +F D +LR+ S+ +E ++  I  ++D+M+E MY+T+ G GLAA QIG+L RLV
Sbjct: 1   MALRKIRLFGDEVLRKKSKEVEVVDEKIRQILDDMVETMYNTENGGGLAAPQIGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLS P     + R   +TV+ +D N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGSQEVI-EGCLSNPHVFGRLLRPEKVTVQALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 KEIILTGTGDLAKCFCHEIDHLEGILFTDFVTE 147


>gi|164687803|ref|ZP_02211831.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM
           16795]
 gi|164603078|gb|EDQ96543.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM
           16795]
          Length = 157

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 91/150 (60%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +++IN  I+ L+D+M + MY  DG+GLAA Q+G+L R+VV
Sbjct: 12  MALRQIVKIGEPVLRKKSKVVKEINDRIIELLDDMADTMYEADGVGLAAPQVGILKRVVV 71

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       +  INP+II    ++ +  EGCLS+P    DV R   + VR  +   +
Sbjct: 72  IDIGDGL-----IELINPEIIETEGEY-LDNEGCLSVPGECGDVLRPYRVKVRAQNRFGE 125

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              I  + LLA    HE+DHL+GIL++D +
Sbjct: 126 TVEIEGEELLARAFCHEIDHLDGILYVDKV 155


>gi|121998191|ref|YP_001002978.1| peptide deformylase [Halorhodospira halophila SL1]
 gi|121589596|gb|ABM62176.1| peptide deformylase [Halorhodospira halophila SL1]
          Length = 162

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 4/146 (2%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PDP LR+ S P+E+ +  +  L+D+M+E M++   IGLAA Q+ V  R+VV   +     
Sbjct: 10  PDPRLRQPSAPVERFDQALCELVDDMIETMHARSAIGLAAPQVDVRQRIVVCCTEPA--- 66

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           + P VFINP+I T S      +E CLS+P  +  V+R   ++VR  D   +      + L
Sbjct: 67  QAPRVFINPEI-TGSSLPGYIEESCLSVPGQQGLVRRPTRVSVRAQDTAGERFHCKLENL 125

Query: 130 LATCLQHELDHLNGILFIDHLSRLKR 155
            A CL HE+DHL+G LFID L   KR
Sbjct: 126 DAVCLHHEIDHLDGTLFIDRLPFWKR 151


>gi|222618921|gb|EEE55053.1| hypothetical protein OsJ_02752 [Oryza sativa Japonica Group]
          Length = 260

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 79/146 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 60  VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 119

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP +   S    VY+E CLS P   A+V R   + +   D       + 
Sbjct: 120 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 179

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
             GL A   QHE DHL GILF D +S
Sbjct: 180 LSGLSARVFQHEFDHLQGILFFDRMS 205


>gi|218295865|ref|ZP_03496645.1| peptide deformylase [Thermus aquaticus Y51MC23]
 gi|218243603|gb|EED10131.1| peptide deformylase [Thermus aquaticus Y51MC23]
          Length = 190

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61
           P+ ++ DP+LR+ +RP++   S +  L ++MLE M+   G+GLAA QIG+  RL V    
Sbjct: 4   PIRLYGDPVLRKKARPVQDF-SGLKKLAEDMLETMWEARGVGLAAPQIGLSQRLFVAVEY 62

Query: 62  -DLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVR 113
            D  D   R      +   V +NP +IT  +      EGCLS+P  Y  +V R+  I V 
Sbjct: 63  ADEPDEEERPLRDLVRQVYVVVNP-VITHREGLVEGLEGCLSLPGLYSEEVPRAERIRVE 121

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           + D   + + +  +G +A   QHE+DHL G+LF + L + KR+   +K
Sbjct: 122 FQDEEGRRRTLELEGYMARVFQHEIDHLEGVLFFERLPKPKREAFLEK 169


>gi|294102012|ref|YP_003553870.1| peptide deformylase [Aminobacterium colombiense DSM 12261]
 gi|293616992|gb|ADE57146.1| peptide deformylase [Aminobacterium colombiense DSM 12261]
          Length = 164

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 6/156 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PDP+LR+ +  I+  +S +M+LI+ M  +M  +DG+GLAA Q+GV  +L ++   +  +
Sbjct: 9   YPDPVLRKETEAIDLFDSKLMDLIEEMKVIMLESDGVGLAAPQVGVSKKLAIVYYDETLY 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                V INP I+  +D   V +EGCLS P    +V R   + +   + + +   I A+ 
Sbjct: 69  -----VLINP-ILLKADGEQVSEEGCLSFPGIFGNVLRPRHVVIEAYNEHGEKLTIEAED 122

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            LA    HE+DHL G L IDH S LK+++I K+M +
Sbjct: 123 FLARAFLHEMDHLEGRLLIDHFSPLKKNIIRKRMRQ 158


>gi|307109178|gb|EFN57416.1| hypothetical protein CHLNCDRAFT_17300 [Chlorella variabilis]
          Length = 169

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 2/151 (1%)

Query: 3   KKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + PL +  +PDP LR  +  I   +  +  L + M EVMY  DG+GLAA Q+GV  RL+V
Sbjct: 8   QSPLAVLRYPDPRLRAPNARIGAFDDSLRRLAEEMFEVMYEDDGVGLAAPQVGVNVRLMV 67

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +        + +V +NP+II      ++++EGCLS P+  ADV+R + + V+  D + +
Sbjct: 68  FNEAGEKGAGDEIVLVNPQIINQGKARNMFEEGCLSFPNIYADVERPSKVKVKAQDLSGK 127

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +   G  A   QHE DHL+G LF D ++
Sbjct: 128 KFTVSLIGFPARIFQHEYDHLDGRLFHDRMA 158


>gi|114766695|ref|ZP_01445634.1| N-formylmethionyl tRNA deformylase [Pelagibaca bermudensis
           HTCC2601]
 gi|114541085|gb|EAU44140.1| N-formylmethionyl tRNA deformylase [Roseovarius sp. HTCC2601]
          Length = 165

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 5/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++++PDP L++   P  ++   + +  L+ +MLE MY   G GLAA Q+GVL R+
Sbjct: 1   MALREILLWPDPKLKQ---PCAEVGDPAAVSELVTDMLETMYDAPGRGLAAPQVGVLKRV 57

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            V+D         P+V I+P+I+  SD+ +   EGCLSIP   A+V+R  ++ + Y D N
Sbjct: 58  FVMDAGWKDGDMTPVVCIDPQILAVSDETAAGDEGCLSIPGVTANVRRPVWVRMAYTDLN 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              Q    +G  A   QHE DHL+G++  D L
Sbjct: 118 GDRQERRFEGAEAIVAQHEYDHLDGLVHFDRL 149


>gi|158321369|ref|YP_001513876.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
 gi|158141568|gb|ABW19880.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
          Length = 150

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 7/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + +  DPILR+ S+ +E ++  I  ++++M E MY T+ G GLA  QIG+L RLV
Sbjct: 1   MALREIRLMEDPILRKKSKKVEVVDDKIRQILEDMAETMYHTENGGGLAGPQIGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  M  +NP+I+      +V  EGCLSIP+    + R A + V  ++   
Sbjct: 61  VIDMG-----QGLMKLVNPRIVKEEGTQTVI-EGCLSIPNQFGKLARPAKVIVEALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           +   I A G LA C  HE+DHLNGILF D
Sbjct: 115 EEITITATGNLAKCFCHEIDHLNGILFTD 143


>gi|255525653|ref|ZP_05392586.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296185413|ref|ZP_06853823.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255510639|gb|EET86946.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296050247|gb|EFG89671.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 151

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 89/142 (62%), Gaps = 6/142 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+ SR +E I+  I+ L+D+M E MY  DG+GLA  Q+G+L R+VVID+ +   
Sbjct: 9   YGDDLLRKKSRKVENIDDRIVTLLDDMAETMYDADGVGLAGPQVGILKRVVVIDVGEGI- 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +  INP+II+    + + +EGCLS+P  +  V+R   + V+ ++   +  I+  + 
Sbjct: 68  ----LKLINPEIISTEGSY-IDEEGCLSVPGEQGKVERPYKVKVKALNEKGEEIIVEGEE 122

Query: 129 LLATCLQHELDHLNGILFIDHL 150
           LLA  L HE+DHL GILF+D +
Sbjct: 123 LLARALCHEIDHLEGILFVDKI 144


>gi|283797831|ref|ZP_06346984.1| peptide deformylase [Clostridium sp. M62/1]
 gi|291074519|gb|EFE11883.1| peptide deformylase [Clostridium sp. M62/1]
 gi|295091956|emb|CBK78063.1| peptide deformylase [Clostridium cf. saccharolyticum K10]
          Length = 159

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 5/141 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+  +P++++      LI++M + MY  +G+GLAAVQ+GV  ++VVID++D     
Sbjct: 11  DEILRKECKPVKEMTPHTAELIEDMFDTMYEANGVGLAAVQVGVRKQIVVIDVED----G 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           N  V INP+I+  S       EGCLS+P     V R  ++ V+ ++   +  ++  +GLL
Sbjct: 67  NQYVLINPEILETSGS-QTGPEGCLSVPGKSGTVTRPDYVKVKALNEKMEEFVLEGEGLL 125

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  + HE DHL G+L++D + 
Sbjct: 126 ARAICHECDHLYGVLYVDKVE 146


>gi|51598326|ref|YP_072514.1| peptide deformylase [Borrelia garinii PBi]
 gi|51572897|gb|AAU06922.1| polypeptide deformylase [Borrelia garinii PBi]
          Length = 186

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+    
Sbjct: 24  MVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVRENR 83

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP I   S + + Y+EGCLSIP    ++ R   I V++ D N +   I 
Sbjct: 84  MAR---PLVFINPSITETSYELNSYKEGCLSIPGVYYNLMRPNGIVVKFYDENGKSFTIE 140

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNGILFID+   R+K  ++   M +
Sbjct: 141 NSDFLARIIQHEMDHLNGILFIDYYEERIKNKLLKPYMRE 180


>gi|253681826|ref|ZP_04862623.1| peptide deformylase [Clostridium botulinum D str. 1873]
 gi|253561538|gb|EES90990.1| peptide deformylase [Clostridium botulinum D str. 1873]
          Length = 159

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V   + +LRR S+ I++I+ +++ LI ++ + +YS DG+GLAA QIG+L R  +
Sbjct: 1   MAIKNIVTVENKLLRRKSKRIDRIDDEVLELIQDLKDTLYSGDGVGLAAPQIGILKRAFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+D      P++ +NPKI+     +    EGCLS P Y   V R   + V  M+   +
Sbjct: 61  IDLRDG---NGPLILLNPKILKKIGKYE-DGEGCLSYPGYEGIVVRPRKVVVSGMNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +    A GL+A  + HE DHL+GIL++D   ++
Sbjct: 117 NVQYEATGLMARAICHETDHLDGILYMDLAKKM 149


>gi|119383397|ref|YP_914453.1| peptide deformylase [Paracoccus denitrificans PD1222]
 gi|119373164|gb|ABL68757.1| peptide deformylase [Paracoccus denitrificans PD1222]
          Length = 166

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 95/167 (56%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + + D  L   + P+  I   +  + D+M++ M +  G+GLAA QIG++ RL V
Sbjct: 1   MTVRPFLPYADRRLHLPAEPVPAITETVRMIWDDMIDTMEAMPGVGLAAPQIGIMQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R   +   NP+++  S     ++E   ++P   A ++R   +TVR+++ + +
Sbjct: 61  VDASEK--RGQAVRMANPEVLHASVQLRAHEEASPNLPGVSARIERPRAVTVRFLNADGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +     GL AT +QH++DHLNG L++D+LS L+R M+  K +K  +
Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGRLYVDYLSPLRRKMLVAKSAKFAR 165


>gi|289209646|ref|YP_003461712.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
 gi|288945277|gb|ADC72976.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
          Length = 178

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 9/153 (5%)

Query: 12  PILRRVSRPIEKINSD---IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           P LRRV  P+ + + D   +  L+D++++ M++++G+GLAA QIGV +R+ VI++Q    
Sbjct: 12  PDLRRVCDPVPESDFDSPGLHALVDDLVDTMHASEGLGLAAAQIGVPHRVAVIEIQPGNT 71

Query: 69  R------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           R         +  +NP +         Y EGCLS+P  R +V R   I V Y + +   +
Sbjct: 72  RYPGAVPTGRLALVNPVVTVLDPTPQRYWEGCLSVPGLRGEVARPRHIAVDYHEPDGTPR 131

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +  +G LAT  QHE+DHL+G LFID ++   R
Sbjct: 132 HLEPEGFLATVFQHEIDHLDGTLFIDRVTDTTR 164


>gi|239826564|ref|YP_002949188.1| peptide deformylase [Geobacillus sp. WCH70]
 gi|239806857|gb|ACS23922.1| peptide deformylase [Geobacillus sp. WCH70]
          Length = 157

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 4/148 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +P  IL  +  P+++ +  ++ L+++M E M   DG+GLAA Q+G+  ++ V+D+ 
Sbjct: 5   PIVTYPADILETMCEPVKQFDRQLIQLLNDMYETMIDEDGVGLAAPQVGIAKQIAVVDVG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R   +  INP+II    +  +  EGCLS P    +VKR+ ++ VR  D   +   +
Sbjct: 65  DKHGR---IELINPRIIEARGE-QIGPEGCLSFPGLFGEVKRANYVKVRAQDRRGRVFTL 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
            A   LA  LQHE+DHLNGILF   + R
Sbjct: 121 EATEFLARALQHEIDHLNGILFTSKVIR 148


>gi|325662245|ref|ZP_08150860.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086046|ref|ZP_08335129.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471497|gb|EGC74718.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406969|gb|EGG86474.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 156

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 86/147 (58%), Gaps = 6/147 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +V + +EK+      LID+M + MY   G+GLAA Q+GVL R+V ID+ +     
Sbjct: 11  DDVLTKVCKEVEKVTPRTKVLIDDMFDTMYDAMGVGLAAPQVGVLKRIVTIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+II  S +    +EGCLS+P     V R  ++ VR  D + +  ++  +GLL
Sbjct: 66  GPILLINPEIIETSGE-QTGEEGCLSVPGKSGVVTRPNYVKVRAFDEDMKEIVLEGEGLL 124

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDM 157
           A    HE+DHL+G L+++ +     DM
Sbjct: 125 ARAFCHEIDHLDGHLYVEKVEGELEDM 151


>gi|297182175|gb|ADI18346.1| N-formylmethionyl-tRNA deformylase [uncultured actinobacterium
           HF4000_04C13]
          Length = 180

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 11/171 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + +  DP+LRR +  +  ++  ++ L D+M   MY   GIGLAA Q+GV  R  V
Sbjct: 1   MAPHQIRLIGDPVLRRPATDVTDVDGALVRLTDDMFTTMYEAPGIGLAAPQVGVQKRFFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D     H +   V +NP+II  SD    ++EGCLS+PD   ++ R   + +  +D +  
Sbjct: 61  YD-----HGEGAGVILNPRIIE-SDGEWTFEEGCLSVPDLTWEITRPKQVHLVGVDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS-----RLKRDMITKKMSKLV 166
              I AD + A   QHE+DHL+G+L +DHL        +R +    MS+L 
Sbjct: 115 EVSIEADEIEARLFQHEIDHLDGVLLVDHLDEDQAREARRALREMTMSRLA 165


>gi|331269019|ref|YP_004395511.1| peptide deformylase [Clostridium botulinum BKT015925]
 gi|329125569|gb|AEB75514.1| peptide deformylase [Clostridium botulinum BKT015925]
          Length = 159

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 13/165 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V   + +LRR S+ IE I+ +++ LI ++ + +YS DG+GLAA QIGVL R  +
Sbjct: 1   MAIKDIVTTENKLLRRKSKRIESIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+D      P++ +NPKI+     +    EGCLS P Y   V R   + V  ++   +
Sbjct: 61  IDLRDG---NGPLILLNPKILKKIGKYE-DGEGCLSYPGYEGIVVRPRKVIVSGINEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                A GL+A  + HE DHL+GIL++D         + KKM K+
Sbjct: 117 SAQYEATGLMARAICHETDHLDGILYMD---------LAKKMYKI 152


>gi|84514539|ref|ZP_01001903.1| peptide deformylase [Loktanella vestfoldensis SKA53]
 gi|84511590|gb|EAQ08043.1| peptide deformylase [Loktanella vestfoldensis SKA53]
          Length = 169

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 2/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  V +P P+LR  + P+  I  +I  L D M+  M +  G+GLAA Q+GV   L V
Sbjct: 1   MTHRAYVQWPHPVLRTPAAPVAAITDEIRALWDEMIVAMDTMPGVGLAAPQLGVGLALAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S +F  ++EG  ++P   A + R   +TVR+++ + +
Sbjct: 61  VDAS--TMRGQAVRMANPEILHSSVEFRDHEEGSPNLPGVWARISRPRAVTVRFLNADGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            +     GL AT +QH++DHL G +FID +++++RDM+
Sbjct: 119 VEERDFVGLWATSVQHQIDHLAGRMFIDRMTKVRRDML 156


>gi|315608229|ref|ZP_07883220.1| peptide deformylase [Prevotella buccae ATCC 33574]
 gi|315250099|gb|EFU30097.1| peptide deformylase [Prevotella buccae ATCC 33574]
          Length = 181

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 94/167 (56%), Gaps = 7/167 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
           I+  P+LR+V+  I      +  LI +M E + +++G+GLAA QIG   R+ VIDL    
Sbjct: 2   IYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVIDLDVLS 61

Query: 65  -DHAHRKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D    K+    +INP I+ F ++      +EGCLSIP    +V R   I V+Y D +  
Sbjct: 62  DDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKYRDTDFV 121

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               + +G LA  +QHE DHL+G +F+D +S L++ +I  K+  +++
Sbjct: 122 EHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILK 168


>gi|227552688|ref|ZP_03982737.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257888656|ref|ZP_05668309.1| formylmethionine deformylase [Enterococcus faecium 1,141,733]
 gi|257897388|ref|ZP_05677041.1| formylmethionine deformylase [Enterococcus faecium Com12]
 gi|293378852|ref|ZP_06625007.1| peptide deformylase [Enterococcus faecium PC4.1]
 gi|227178175|gb|EEI59147.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257824710|gb|EEV51642.1| formylmethionine deformylase [Enterococcus faecium 1,141,733]
 gi|257833953|gb|EEV60374.1| formylmethionine deformylase [Enterococcus faecium Com12]
 gi|292642393|gb|EFF60548.1| peptide deformylase [Enterococcus faecium PC4.1]
          Length = 163

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 91/149 (61%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+  ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ VI
Sbjct: 1   MRYPILIHPNDKLKIPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +          INP+II    + S+  EGCLSIP     VKR+  +TVRY D + + 
Sbjct: 61  EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|269792636|ref|YP_003317540.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100271|gb|ACZ19258.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 168

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 6/157 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +FPDP+LR+    +     ++ +L+ +M   MY+ DG+GLAA Q+G+   L VID     
Sbjct: 13  VFPDPVLRQPVEEVRDFGEELSDLLADMWATMYAKDGVGLAAPQVGISKSLAVID----- 67

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           H  +  V +NP+I++  D     +EGCLS P    +VKR + I +R+ D     + +   
Sbjct: 68  HHGDRYVVVNPQILS-QDGEEEGEEGCLSFPGIFVNVKRPSRIRLRFQDETGAVKEMELQ 126

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           G +A    HE+DHL G L IDH+S ++R MI  +++K
Sbjct: 127 GFIARVFLHEIDHLRGRLLIDHVSPIRRQMIKTRLAK 163


>gi|254438825|ref|ZP_05052319.1| peptide deformylase [Octadecabacter antarcticus 307]
 gi|198254271|gb|EDY78585.1| peptide deformylase [Octadecabacter antarcticus 307]
          Length = 164

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 83/151 (54%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV + + ++P  +L +   P    + D+  LI+++ + MY   G  LAA QIGV  R+ V
Sbjct: 1   MVTRDIRLWPHAVLTQTCAPASLNDPDLDGLIEDLFDTMYHAKGRVLAAPQIGVTKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      ++P  FINP+I   + D     E CLSIPD    V R   + +R+ + +  
Sbjct: 61  VDVTWKDGIRDPRAFINPQITETAGDTVFMDEQCLSIPDTPMPVARPEAVQLRWANRDGG 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +    DG+LA C+QHELDHLNG +  DH S
Sbjct: 121 LETAPFDGILARCIQHELDHLNGTVIFDHQS 151


>gi|32477751|ref|NP_870745.1| peptide deformylase [Rhodopirellula baltica SH 1]
 gi|39930837|sp|Q7UHZ5|DEF_RHOBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|32448305|emb|CAD77822.1| peptide deformylase [Rhodopirellula baltica SH 1]
 gi|327543078|gb|EGF29520.1| peptide deformylase [Rhodopirellula baltica WH47]
          Length = 201

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 15/173 (8%)

Query: 5   PLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL I  FP P LR VSRPI ++++ + ++ D ML++MY  DG+GLAA Q+ +  R+ V +
Sbjct: 2   PLSIIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVAN 61

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                      V +NP+I     +    QEGCLS+P     VKR   + +R  D      
Sbjct: 62  PTGKRDEGESWVILNPEIDRPKGN-DTAQEGCLSVPGLYGQVKRPKTVRLRGFDLQGNEI 120

Query: 123 IIYADGLLATCLQHELDHLNGILFID------------HLSRLKRDMITKKMS 163
               DG +A  +QHE+DHL+GI+F D            HL   K D  +K+ +
Sbjct: 121 NQVLDGFMARVVQHEVDHLDGIMFFDRIGEEGLRDLEGHLEEFKTDYESKQGT 173


>gi|229495940|ref|ZP_04389664.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406]
 gi|229317032|gb|EEN82941.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406]
          Length = 190

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 5/167 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR V++ I     ++  LI  M + MY +DGIGLAA QIG   RL+VID  
Sbjct: 3   PIYLYGHPVLREVAQDITPEYPNLSGLIAEMWKSMYESDGIGLAAPQIGKSIRLLVIDAS 62

Query: 65  DHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             A      +    V IN +I   S++    +EGCLS+P     V+R   IT+ Y+D   
Sbjct: 63  PMAEYFPECKDFKTVMINARITELSEETLSEEEGCLSLPGIHERVERPKEITIEYLDEQF 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             Q  +  G  A  +QHE DHL G LF DH+S L++ ++  K++++ 
Sbjct: 123 TPQTRHLTGFAARVVQHEYDHLEGKLFTDHVSTLRKSLLKNKLARIA 169


>gi|317503055|ref|ZP_07961134.1| peptide deformylase [Prevotella salivae DSM 15606]
 gi|315665828|gb|EFV05416.1| peptide deformylase [Prevotella salivae DSM 15606]
          Length = 187

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 92/170 (54%), Gaps = 7/170 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+  P+LR+V++ I      +  LI +M E M +++G+GLAA QIG   R+VVIDL 
Sbjct: 4   PIYIYGQPVLRKVAQDISPDYPQLKELISDMFESMTASNGVGLAAPQIGKDIRVVVIDLD 63

Query: 65  ----DHAHRKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               D    K     FIN  ++   DD      +EGCLS+P     V R   I V+Y D 
Sbjct: 64  VLSDDFPEYKGFRKAFINAHVLEVDDDSPKETLEEGCLSLPGLSEKVTRPTRIHVKYQDE 123

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + +G LA  +QHE DHL G +FID +  L++ MI  K+  +++
Sbjct: 124 DFVEHDEWVEGYLARVMQHEFDHLEGKMFIDRIPPLRKQMIYSKLKAMLK 173


>gi|237795811|ref|YP_002863363.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|229264121|gb|ACQ55154.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 150

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+T+ G GLAA+Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAALQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|225377871|ref|ZP_03755092.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM
           16841]
 gi|225210309|gb|EEG92663.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM
           16841]
          Length = 166

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+L ++ +P++++      LI++ML+ MY  +G+GLAA Q+G+L R+VVID+ +     
Sbjct: 20  DPVLEKICKPVKELTPRTKELIEDMLDTMYEANGVGLAAPQVGILKRIVVIDVGE----- 74

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V +NP I+  S +     EGCLSIP     V R  ++ V   D N +   I    L+
Sbjct: 75  GPVVMVNPVILETSGE-QTGDEGCLSIPGKAGQVTRPNYVKVHAFDENMEEYEIEGTELM 133

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  + HE+DHL+G L+++ + 
Sbjct: 134 ARAMCHEIDHLDGHLYVEKVE 154


>gi|325280501|ref|YP_004253043.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
 gi|324312310|gb|ADY32863.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
          Length = 184

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V++  PILR++S  I     ++   I ++ + M   DG+GLAA Q+G   R+ V+D  
Sbjct: 4   PIVVYGHPILRKISEDITPEYPELDKFIRDLFQTMDEADGVGLAAPQVGRNIRIFVVDAN 63

Query: 65  -----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                D   +     FIN  I+    D     EGC+SIP    DVKR   I + YMD   
Sbjct: 64  AFEEMDPDCKGFRKAFINAHILERWGDEISRNEGCISIPGIHEDVKRPNCIRISYMDEQG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           Q       G+ A  +QHE DHL GILF DHLS LK+ ++  K++ +
Sbjct: 124 QEHEEEFCGIKAWIIQHEYDHLEGILFTDHLSALKKRILKNKLNNI 169


>gi|288802833|ref|ZP_06408270.1| peptide deformylase [Prevotella melaninogenica D18]
 gi|288334650|gb|EFC73088.1| peptide deformylase [Prevotella melaninogenica D18]
          Length = 186

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 16/174 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61
           P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VV+   
Sbjct: 4   PIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVVDLD 63

Query: 62  -------DLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113
                  + +D+ H      FIN  I+ + D +    +EGCLS+P     V R+  I V+
Sbjct: 64  VLSDTFPEYKDYRH-----AFINGHILEYDDSETETLEEGCLSLPGIHESVTRAKRIYVK 118

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + D N      + DG LA  +QHE DHL G +F D LS  ++ MI  K+  L+Q
Sbjct: 119 WYDENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMINSKLKALLQ 172


>gi|312131601|ref|YP_003998941.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
 gi|311908147|gb|ADQ18588.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
          Length = 190

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P++ +   +LR+  + I K   D+  +  NM E MY+  GIGLA  Q+ + YR+ V+D  
Sbjct: 4   PIIGYGATVLRKKCQDIVKGELDVKQISQNMFETMYAASGIGLAGPQVNLPYRIFVVDGE 63

Query: 63  -LQDHAHRKNPM---------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            + + A  +  +          FIN +I+  + +   Y+EGCLSIP  RADV R   IT+
Sbjct: 64  IINNSAETEEEIDPDLVGFKKTFINAQILEETGEPWPYEEGCLSIPGIRADVYRKPVITI 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           RY D +         G+ A  +QHE DH+ G+LF D+L+
Sbjct: 124 RYFDTDWVEHTESFKGMAARIIQHEYDHIEGVLFTDYLA 162


>gi|257124971|ref|YP_003163085.1| peptide deformylase [Leptotrichia buccalis C-1013-b]
 gi|257048910|gb|ACV38094.1| peptide deformylase [Leptotrichia buccalis C-1013-b]
          Length = 172

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 92/160 (57%), Gaps = 5/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++  P LR+ S  ++ ++ ++   +D M+ +M   +G+GLAA Q+ +  R  V++  D
Sbjct: 3   IVLYGHPTLRQKSEKVDVVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLE-HD 61

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +K     INP+I+ FSD+    +EGCLSIP     V R A I V+Y++ N +  +  
Sbjct: 62  GVVKK----VINPEILEFSDEIVDMEEGCLSIPGVFKKVNRPAKIKVKYLNENGKEVVEE 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            + + +   QHE DH+ GILF D LS + + ++ KK+  L
Sbjct: 118 LEEMWSRAFQHEFDHIEGILFTDKLSVMNKRLVAKKLDVL 157


>gi|50235447|gb|AAT70831.1| polypeptide deformylase [Borrelia hermsii]
          Length = 185

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 91/163 (55%), Gaps = 11/163 (6%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PD +LR  ++ +  I+ ++ N+   M+ +M    G+GLAA Q+G       +DL  
Sbjct: 23  IVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVG-------LDLSI 75

Query: 66  HAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              R+N    P+VFINP I   S + SVY+EGCLSIP    D+ R   ITV   D N + 
Sbjct: 76  FVVRENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKF 135

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I +  LLA  +QHE+DHL G+LFID+     R+ + K   K
Sbjct: 136 FKIESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMK 178


>gi|187917944|ref|YP_001883507.1| peptide deformylase [Borrelia hermsii DAH]
 gi|119860792|gb|AAX16587.1| peptide deformylase [Borrelia hermsii DAH]
          Length = 174

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 91/163 (55%), Gaps = 11/163 (6%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PD +LR  ++ +  I+ ++ N+   M+ +M    G+GLAA Q+G       +DL  
Sbjct: 12  IVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVG-------LDLSI 64

Query: 66  HAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              R+N    P+VFINP I   S + SVY+EGCLSIP    D+ R   ITV   D N + 
Sbjct: 65  FVVRENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKF 124

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I +  LLA  +QHE+DHL G+LFID+     R+ + K   K
Sbjct: 125 FKIESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMK 167


>gi|224538349|ref|ZP_03678888.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519978|gb|EEF89083.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 171

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 15/169 (8%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           KP+ I+ +P+LR+    IEK    I  +I+ M +   + DG GLAA QI +  +L V++ 
Sbjct: 3   KPITIYGNPVLRKECVSIEKTYPGIQEVIETMWQTQRNADGCGLAAPQINLPIKLFVVNS 62

Query: 64  QDH------AHRKN---------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           +D         R+             FIN +I  +SD+     EGCLSIPD   +V R  
Sbjct: 63  RDSYACMSIRERERFFSKDDCGIEETFINAEITGYSDEVWTTGEGCLSIPDLYEEVTRPW 122

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            IT++Y D     Q+    G  A  +QHE +H  G L+IDHLS  ++ +
Sbjct: 123 SITIKYQDKEFNEQVKVYHGYTARIIQHEFEHTEGKLYIDHLSPFRKQL 171


>gi|302874748|ref|YP_003843381.1| peptide deformylase [Clostridium cellulovorans 743B]
 gi|307690637|ref|ZP_07633083.1| peptide deformylase [Clostridium cellulovorans 743B]
 gi|302577605|gb|ADL51617.1| peptide deformylase [Clostridium cellulovorans 743B]
          Length = 149

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 6/138 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ S+ +E I+     LI +M++ MY  DG+GLAA Q+G+L ++ VID+ +     
Sbjct: 11  DAVLRKNSKNVEVIDDRTKVLIQDMIDTMYDADGVGLAAPQVGILKKIFVIDIGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+VFINP+I+     + V  EGCLSIP   A+V+R   + V+ ++ N +  I+  + LL
Sbjct: 66  GPIVFINPEILETEGSY-VDSEGCLSIPGESAEVERPYKVKVKALNENGEEFILEGEELL 124

Query: 131 ATCLQHELDHLNGILFID 148
           A  + HE DHL G L+ID
Sbjct: 125 ARAICHENDHLYGTLYID 142


>gi|313113575|ref|ZP_07799163.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624090|gb|EFQ07457.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 178

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G+L RL V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTTFDDRLATLLDDMHETMIAADGVGLAGPQVGMLRRLFV 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P       + F+NP+I+  S++     EGCLS P +   V R A + VR
Sbjct: 61  VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPAAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             D + +   + A+ LL  C+QHE DHL+GI  +        D    K +
Sbjct: 121 AQDRHGEWFELEAENLLGRCIQHENDHLDGITIMQSSEYFYEDTEEGKKA 170


>gi|261856616|ref|YP_003263899.1| peptide deformylase [Halothiobacillus neapolitanus c2]
 gi|261837085|gb|ACX96852.1| peptide deformylase [Halothiobacillus neapolitanus c2]
          Length = 166

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 13/158 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M    ++ +PD  L+    P++  N ++ + ID+++E      G +G+AA Q+GVL R+ 
Sbjct: 1   MASLEILTYPDERLKTGCEPVDTFNPEMQSFIDHLIETCSGGPGAVGIAAPQVGVLQRIC 60

Query: 60  VID-------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++D       + +H H    +V INP+I  + D F+V +EGCLS+PDY   V R+  I +
Sbjct: 61  IVDATRARRPVDNHGH----LVLINPEITAW-DGFAVGREGCLSVPDYTGKVIRAEKIEL 115

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  D N +       G  A   QHE+DHL+GILF+D L
Sbjct: 116 KAQDRNGKPCTFTMSGFEARIAQHEVDHLDGILFLDRL 153


>gi|203283991|ref|YP_002221731.1| polypeptide deformylase [Borrelia duttonii Ly]
 gi|203287534|ref|YP_002222549.1| polypeptide deformylase [Borrelia recurrentis A1]
 gi|201083434|gb|ACH93025.1| polypeptide deformylase [Borrelia duttonii Ly]
 gi|201084754|gb|ACH94328.1| polypeptide deformylase [Borrelia recurrentis A1]
          Length = 165

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 93/163 (57%), Gaps = 11/163 (6%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PD +LR  ++ +E I+ ++ ++I  M+ +M  + G+GLAA Q+G       +DL  
Sbjct: 3   IVFYPDDLLRVQTKDVENIDDELRSIIFEMIGLMDKSKGVGLAAPQVG-------LDLSI 55

Query: 66  HAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              RKN    P+VFINP I + S + SVY+EGCLSIP    D+ R   I +   D N + 
Sbjct: 56  FVVRKNMMSKPLVFINPVITSKSVELSVYKEGCLSIPGVYYDLSRPKSIVIEAYDENGKF 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I    +LA  +QHE+DHL G+LFID+     R+ + K   K
Sbjct: 116 FKIEDLDILARIIQHEMDHLKGVLFIDYYEDKLRNKLLKSYLK 158


>gi|163782173|ref|ZP_02177172.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882705|gb|EDP76210.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 171

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 94/163 (57%), Gaps = 2/163 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +V +P  +L++ +  +  I+ ++ +LI +M + MY+ +G+GLAA QIGV   ++VID 
Sbjct: 3   REIVTYPAEVLKKPTLEVSDIDREVKSLIKDMFDTMYNAEGVGLAANQIGVPLSVMVIDT 62

Query: 64  QDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                  +  +V INP++I  S+    Y+EGCLS P    +V+R+  + VR ++ + +  
Sbjct: 63  TPKEDVPDLKLVLINPEVIA-SEGKQKYKEGCLSFPGLSVEVERAKRVKVRALNEHGEPV 121

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +  +   A   QHELDHL GI FID L   +R +  +K  KL
Sbjct: 122 EVVLEDFPAIVFQHELDHLKGITFIDRLKGWRRRLALEKYRKL 164


>gi|313683649|ref|YP_004061387.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994]
 gi|313156509|gb|ADR35187.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994]
          Length = 171

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 98/163 (60%), Gaps = 4/163 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61
           P++ +P+  L+  S+ +   +  +   +D+M E M +++GIGLAA+Q+    R++++   
Sbjct: 4   PIITYPNKQLKARSQTVVNFDELLHRFLDDMYETMIASNGIGLAAIQVANPIRVLILCIP 63

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D + + H++N +  INP +I       +YQEGCLS+P +  DV+R   ++++Y + + + 
Sbjct: 64  DEEGNQHKENLLEIINP-VIHNPKGNVLYQEGCLSVPGFYEDVERYETLSLKYQNRHGEA 122

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++A  LLA  +QHE+DHL G LFI+ L+  +R    K+  K
Sbjct: 123 CELHASDLLAIAIQHEIDHLEGKLFIEKLTYNRRKKFEKEYKK 165


>gi|189467964|ref|ZP_03016749.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM
           17393]
 gi|189436228|gb|EDV05213.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM
           17393]
          Length = 186

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 15/179 (8%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           KP+ ++ + +LR+    IE+   +I  +I+ M + +   DG GLAA QI +  +L +++ 
Sbjct: 3   KPITVYGNSVLRKECEDIEQNYPNIQEVIETMWQTLRDADGCGLAAPQINLPIKLFIVNS 62

Query: 64  QD------HAHRKNPMV---------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           +D         R++  V         FIN KII +S+      EGCLSIPD   +V R  
Sbjct: 63  KDTYTYMSAKEREHFFVEEDCGIEETFINAKIIAYSEKVWTAGEGCLSIPDLYEEVTRPW 122

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +T+RY D   + Q     G  A  +QHE +H  G L+ID LS L++ +I  K+ ++++
Sbjct: 123 SVTIRYQDNEFKEQNRTYYGYTARIIQHEFEHTQGKLYIDRLSPLRKQLIKNKLMRIIK 181


>gi|224531760|ref|ZP_03672392.1| peptide deformylase [Borrelia valaisiana VS116]
 gi|224511225|gb|EEF81631.1| peptide deformylase [Borrelia valaisiana VS116]
          Length = 165

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ I  I+  I +    M+E+M  + G+GLAA Q+G+   L V+    
Sbjct: 3   MVFYPNDLLRVKTKQINNIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVRENK 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP I   S + + Y+EGCLSIP    D+ R   I V + D N +   I 
Sbjct: 63  MAR---PLVFINPLITETSYELNSYREGCLSIPGVYYDLMRPKAIVVSFYDENGKSFTIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNG+LFID+   R+K  ++   M +
Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEERIKNKLLKPYMRE 159


>gi|116787193|gb|ABK24406.1| unknown [Picea sitchensis]
          Length = 290

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 80/145 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PD  LR  ++PI   +  +  L D M ++MY TDG+GL+A Q+GV  +L+V +   
Sbjct: 111 IVKYPDSRLRAKNKPINIFDEKLQRLADEMFDLMYKTDGVGLSAPQVGVNVQLMVFNPAG 170

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            + +   ++ +NP+I  +S    V+ EGCLS P+  ADV+R   + +   D   +  I+ 
Sbjct: 171 ESGKGEEVILVNPEIYKYSKRKEVFTEGCLSFPEIYADVERPMSVKIEAWDVKGKKFILS 230

Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150
                A   QHE DHL  ILF + +
Sbjct: 231 LKEFNARIFQHEYDHLQRILFFERM 255


>gi|221633590|ref|YP_002522816.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
 gi|254767609|sp|B9L0C1|DEF_THERP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|221156095|gb|ACM05222.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
          Length = 176

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   DP LR+ +  I  ++ ++  L  ++ + + +  G+GLAA QIGVL R++V
Sbjct: 1   MAVRTIITEGDPRLRQKAIRIRVVDEEVRQLARDLWDTVRAARGLGLAAPQIGVLRRIIV 60

Query: 61  IDLQ-DHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           + +  D+    +P V    INP+I+  S    V  EGCLSIP +  +V RS  +TV+ +D
Sbjct: 61  VAIPPDYVEEGDPGVELTLINPEIVRASG-RQVGLEGCLSIPGWYGEVPRSMHVTVKALD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + +   +   GLLA  LQHE+DHL GILF+D + 
Sbjct: 120 LDGREVRVKGSGLLARVLQHEIDHLEGILFVDRIE 154


>gi|324997314|ref|ZP_08118426.1| peptide deformylase [Pseudonocardia sp. P1]
          Length = 193

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 12/149 (8%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+L R +RP+E+++  I  L+D+M E M + +G+GLAA Q+GV  RL V D  D   R 
Sbjct: 11  DPVLHRPTRPVEQVDDGIRTLVDDMFETMAAANGVGLAANQVGVDLRLFVYDCPDEETRT 70

Query: 71  -------NPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                  NP++  +  P+++   DD    +EGCLS+P       R+ +  V   D + + 
Sbjct: 71  MRRGLVVNPVLETSERPQVMPDPDD---DEEGCLSVPGESYPTGRADWARVTGTDLDGEP 127

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             +   G  A CLQHE DHL+G L++D L
Sbjct: 128 VDVEGRGFFARCLQHETDHLDGHLYLDRL 156


>gi|313892009|ref|ZP_07825610.1| peptide deformylase [Dialister microaerophilus UPII 345-E]
 gi|313119652|gb|EFR42843.1| peptide deformylase [Dialister microaerophilus UPII 345-E]
          Length = 153

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 9/140 (6%)

Query: 13  ILRRVSRPIEK----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +LR V++P+ +     +  + +LI +M + MY+ +G+GLAA QIG+  R+ V D  D   
Sbjct: 11  VLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFVADCNDGFD 70

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                V+INP+     D   +  EGCLS+ D   +V+R A + V+Y D   + +   A G
Sbjct: 71  -----VYINPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGKRKQKKATG 125

Query: 129 LLATCLQHELDHLNGILFID 148
           L A C+QHE+DHLNG LFID
Sbjct: 126 LFARCVQHEIDHLNGTLFID 145


>gi|269302867|gb|ACZ32967.1| peptide deformylase [Chlamydophila pneumoniae LPCoLN]
          Length = 186

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 85/155 (54%), Gaps = 6/155 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           L  +  PILR+ S PI +I  +I NL+ +M + M +  G+GLAA Q+G    L V+ +  
Sbjct: 5   LEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVMCVDR 64

Query: 66  HAH------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                     ++P VFINP +   S+   + +EGCLSIP  R +V R   ITV  MD N 
Sbjct: 65  ETEDGELIFSESPRVFINPVLSDPSETLIIGKEGCLSIPGLRGEVFRPQKITVTAMDLNG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           +    + +G  A  + HE DHLNG+L+ID +   K
Sbjct: 125 KIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPK 159


>gi|242058133|ref|XP_002458212.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor]
 gi|241930187|gb|EES03332.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor]
          Length = 264

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 79/146 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   ++++  L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 75  VVKYPDPILRARNKRINAFDANLRALADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 134

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP +   +    V++EGCLS P    +V R   + +   D       + 
Sbjct: 135 VKGEGEEIVLVNPVVYKSAKRLLVFEEGCLSFPGIYGNVLRPESVKIEAQDVTGAKIKVK 194

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
             GL A   QHE DHL GILF D ++
Sbjct: 195 LSGLPARVFQHEFDHLLGILFFDRMT 220


>gi|229918580|ref|YP_002887226.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
 gi|229470009|gb|ACQ71781.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
          Length = 466

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 79/146 (54%), Gaps = 4/146 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ ILR    P+ K +  +   +D + + MY  DG+G+AA Q+ +  RL V+   D
Sbjct: 4   VVEVPNDILRVTCEPVTKFDKKLRQTVDRLFDTMYEYDGVGVAAPQVNLNQRLAVVHTDD 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+V INP+II  S    V  EGCLSIP     V+R   I V+  D   +   I 
Sbjct: 64  ET---GPLVLINPEIIETSGR-EVGLEGCLSIPGEFGFVERHESIVVKNQDVKGRTHTIQ 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
           A G  A  +QHE+DHL+G+LF D L+
Sbjct: 120 ASGFFARAIQHEMDHLDGVLFTDKLA 145


>gi|291522865|emb|CBK81158.1| peptide deformylase [Coprococcus catus GD/7]
          Length = 159

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 83/141 (58%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+L +V + ++++   +  L+ +MLE MY+ +G+GLAA Q+GVL R+ VID+ +     
Sbjct: 11  DPVLGKVCKEVKEMTPHLKELVQDMLETMYAAEGVGLAAPQVGVLRRVAVIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P VF+NPKI+  + +  +  EGCLS+P     V+R  ++     D +     +   GL 
Sbjct: 66  GPYVFVNPKIVETAGE-QIGDEGCLSVPGKSGTVRRPEYVKTVAFDADMNPIEVEGHGLF 124

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  + HE DHL+G L+++ + 
Sbjct: 125 ARAMCHEFDHLDGHLYLEKVE 145


>gi|218532205|ref|YP_002423021.1| peptide deformylase [Methylobacterium chloromethanicum CM4]
 gi|254563274|ref|YP_003070369.1| peptide deformylase [Methylobacterium extorquens DM4]
 gi|218524508|gb|ACK85093.1| formylmethionine deformylase [Methylobacterium chloromethanicum
           CM4]
 gi|254270552|emb|CAX26555.1| Peptide deformylase (PDF) (Polypeptide deformylase)
           [Methylobacterium extorquens DM4]
          Length = 176

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 10/171 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMN-----LIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +PL+ +PD  L R + P+      +       L  ++L+ + +   +GL A+ IG  
Sbjct: 1   MPVRPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRP 60

Query: 56  YRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            R+VVI LQ D  H     V+++P +   S + + + EG +S+P     V+R A + VRY
Sbjct: 61  ERVVVIRLQPDEPH----AVYVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRY 116

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            D +       A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL
Sbjct: 117 RDLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167


>gi|291542591|emb|CBL15701.1| peptide deformylase [Ruminococcus bromii L2-63]
          Length = 158

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   D +L +  RP+ K +  + +LID+M+E ++  +G+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVKEGDSVLTKKCRPVVKFDDRLADLIDDMIETLHKAEGVGLAAPQVGILRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  +NPKII +S       EGCLSIP       R  ++ V+  D +  
Sbjct: 61  IDVGE-----GPIELVNPKIIAYSGKQETL-EGCLSIPGKWGYTVRPDYVKVKAQDRHGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +I    LLA    HELDHL GILF    +R+
Sbjct: 115 EFVIDGKDLLAKAFCHELDHLEGILFTQVATRM 147


>gi|225848865|ref|YP_002729029.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643764|gb|ACN98814.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 179

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 8/163 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL----- 63
           +PD IL+  ++ I+  +  +   ID M E MY  +G+GLAA QIG+ Y+++VID      
Sbjct: 8   WPDKILKEPTKEIDFFDDRLKEYIDKMWEFMYKEEGVGLAANQIGIPYQILVIDTSIREK 67

Query: 64  QDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++    + P  MV INPKI+   +   +  EGCLS P  +  + R   + V   +   + 
Sbjct: 68  KNEEETEPPVKMVLINPKIVE-KEGQVMSTEGCLSFPGVQITIPRYKRVKVVGKNEKGED 126

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ++ +   L+  LQHE+DHLNGI FI +LS LKR ++  K  K
Sbjct: 127 VVVESSEFLSIVLQHEIDHLNGIPFISYLSPLKRKLVLDKYLK 169


>gi|262091714|gb|ACY25304.1| peptide deformylase [uncultured actinobacterium]
          Length = 175

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 83/143 (58%), Gaps = 6/143 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           ++ DP+L+ ++  I  I+  +++L +NML +MY   G+GLA  QIGV  ++ V D+ D  
Sbjct: 9   VYGDPVLKTLAASITNIDGKLVSLAENMLHIMYEAPGLGLAGPQIGVQKQIFVYDVDD-- 66

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
              +P V +NP I+  S ++ VY EGCLSIP    ++ R   + VR +        + AD
Sbjct: 67  ---DPQVILNPTIVESSGEW-VYDEGCLSIPGLFVEMLRPKEVLVRGLTLEGDEIEVEAD 122

Query: 128 GLLATCLQHELDHLNGILFIDHL 150
            LLA   QHE+DHL G+L  D +
Sbjct: 123 ELLARLFQHEIDHLQGVLMFDRM 145


>gi|15895739|ref|NP_349088.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC
           824]
 gi|23396569|sp|Q97G95|DEF2_CLOAB RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|15025493|gb|AAK80428.1|AE007746_15 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC
           824]
 gi|325509889|gb|ADZ21525.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum EA
           2018]
          Length = 150

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 88/143 (61%), Gaps = 7/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D ILR+ SRP+E ++  I  ++D+ML+ + +T+ G  +AA Q+G+L +LVVI     A  
Sbjct: 11  DEILRKKSRPVEVVDDKIRQILDDMLDTLQNTENGAAIAAPQVGILKQLVVI-----ATG 65

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           ++ +  +NPKI+    +  V  EGCLSIP+    +KR   +TV  ++ N +   +  +G 
Sbjct: 66  EDIIKLVNPKIVKKEGEQEVV-EGCLSIPNVYGKLKRPKKVTVEALNENGEKITLTGEGF 124

Query: 130 LATCLQHELDHLNGILFIDHLSR 152
           LA C  HE+DHL+GILF D ++ 
Sbjct: 125 LAKCFCHEIDHLDGILFTDLVTE 147


>gi|311029970|ref|ZP_07708060.1| peptide deformylase [Bacillus sp. m3-13]
          Length = 159

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 84/147 (57%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P P+L +    +   +  ++ L+ NM + M   DG+GLAA QIG+  R+ ++D+ D
Sbjct: 6   IVKYPAPVLEQNCEAVTVFDKRLIRLLSNMYDTMLEADGVGLAAPQIGIAKRIAIVDIDD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP+I+    +  V  EGCLS PD   +VKR+ ++ VR  +   +   + 
Sbjct: 66  ---KHGKIELINPEIVDEEGE-QVGPEGCLSFPDLYGEVKRADYVKVRAQNRKGKWYELE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A G LA  +QHE+DHLNG+LF   + R
Sbjct: 122 ARGFLARAIQHEIDHLNGVLFTSKVLR 148


>gi|300741380|ref|ZP_07071401.1| peptide deformylase [Rothia dentocariosa M567]
 gi|300380565|gb|EFJ77127.1| peptide deformylase [Rothia dentocariosa M567]
          Length = 190

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI+ +P+L R + P+   + +   L+ +M E M +  G+GLAA QIGV  R+  
Sbjct: 1   MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++          +NP     K+     D    +EGCLS P Y   +KR+ ++TV   
Sbjct: 61  YQMENEDGVTPRGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D         A G  A C+QHE DHL+G L+++ L++      T +M K+V+
Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTSRMKKVVK 168


>gi|311113462|ref|YP_003984684.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
 gi|310944956|gb|ADP41250.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
          Length = 190

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI+ +P+L R + P+   + +   L+ +M E M +  G+GLAA QIGV  R+  
Sbjct: 1   MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++          +NP     K+     D    +EGCLS P Y   +KR+ ++TV   
Sbjct: 61  YQMENEDGVPARGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D         A G  A C+QHE DHL+G L+++ L++      T +M K+V+
Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTSRMKKVVK 168


>gi|271968555|ref|YP_003342751.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270511730|gb|ACZ90008.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 162

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 13/152 (8%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +  DP+LR  + P+   + D+  LID M + MY+  G+GLA  QIGV  R+ V D    +
Sbjct: 6   VVGDPVLRTPAEPVVDFDRDLRRLIDEMFDAMYAAQGVGLAGPQIGVSKRVFVYDC---S 62

Query: 68  HRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYR------ADVKRSAFITVRYMDCNAQ 120
            RK  +  INP ++T  DD  +  +EGCLS+P         A   R+A +TVR +D   +
Sbjct: 63  SRKGHL--INP-VLTVDDDAEILDEEGCLSVPGRDTGTPIYARTPRAAGVTVRGLDRLGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A GLLA C QHE DHL G+L++D L++
Sbjct: 120 PVQIRARGLLARCFQHETDHLEGMLYVDRLAK 151


>gi|226325272|ref|ZP_03800790.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758]
 gi|225206620|gb|EEG88974.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758]
          Length = 156

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 84/141 (59%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +V + + K+      LID+MLE MY   G+GLAA Q+G+L R+VVID+ +     
Sbjct: 11  DEVLTKVCKEVTKMTPRTTELIDDMLETMYEAMGVGLAAPQVGILKRIVVIDIGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I+  S +    +EGCLS+P     V R  ++    +D + +   I  +GL+
Sbjct: 66  GPVVMINPRIVESSGE-QTGEEGCLSVPGKSGIVTRPNYVKAVALDEDMKEYEIEGEGLM 124

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  + HEL+HL+G L+++ + 
Sbjct: 125 ARAICHELEHLDGHLYVEKVE 145


>gi|325000006|ref|ZP_08121118.1| peptide deformylase [Pseudonocardia sp. P1]
          Length = 182

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   ++++  L+ ++ + M++  G GLAA QIGV  R+ V
Sbjct: 1   MSIQPVRLFGDPVLRTRATEVTDFDAELRKLVADLTDTMHAEGGAGLAAPQIGVSRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +    A        INP      ++  V  EGCLSIP    D +R   +  R  D + +
Sbjct: 61  YECDGFAGH-----LINPTWEAVGEEEQVGPEGCLSIPGLGFDCRRKLTVVGRGWDMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q++    LLA C+QHE DHL+G+LF+D L    R    +++ +
Sbjct: 116 PQVVEGSELLARCIQHETDHLDGVLFVDRLDAETRKRAMREIRE 159


>gi|240140764|ref|YP_002965244.1| Peptide deformylase (PDF) (Polypeptide deformylase)
           [Methylobacterium extorquens AM1]
 gi|240010741|gb|ACS41967.1| Peptide deformylase (PDF) (Polypeptide deformylase)
           [Methylobacterium extorquens AM1]
          Length = 176

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 98/172 (56%), Gaps = 12/172 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMN------LIDNMLEVMYSTDGIGLAAVQIGV 54
           M  +PL+ +PD  L R + P+   NS+ +       L  ++L+ + +   +GL A+ IG 
Sbjct: 1   MPVRPLIFYPDARLHRAAEPV-SANSESLTGESWRALAADVLDTLGAVSAMGLTAIHIGR 59

Query: 55  LYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             R+VVI LQ D  H     V+++P +   S + + + EG +S+P     V+R A + VR
Sbjct: 60  PERVVVIRLQPDEPH----AVYVDPVVAWSSPERAAHPEGSVSMPGVVEPVERPARVRVR 115

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           Y D +       A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL
Sbjct: 116 YRDLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167


>gi|226949660|ref|YP_002804751.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|226844106|gb|ACO86772.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|322806631|emb|CBZ04200.1| peptide deformylase [Clostridium botulinum H04402 065]
          Length = 150

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+T+ G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|111114886|ref|YP_709504.1| peptide deformylase [Borrelia afzelii PKo]
 gi|110890160|gb|ABH01328.1| polypeptide deformylase [Borrelia afzelii PKo]
          Length = 165

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   + V+    
Sbjct: 3   MVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSIFVVRENK 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A    P+VFINP I   S + + Y+EGCLSIP    D+ R   I + + D N +   I 
Sbjct: 63  MAK---PLVFINPVITETSYELNSYKEGCLSIPGVYYDLMRPKGIVINFYDENEKSFTIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
               LA  +QHE+DHLNG+LFID+   R+K  ++   M +
Sbjct: 120 NSDFLARIIQHEMDHLNGVLFIDYYEERIKNKLLKPYMRE 159


>gi|198282740|ref|YP_002219061.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666795|ref|YP_002424934.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247261|gb|ACH82854.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519008|gb|ACK79594.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 167

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 8/162 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVID- 62
           P++ +PD  L+R + P+   + D+ + ID++ E MY+   G+G+AA Q+    R+V++D 
Sbjct: 5   PILTYPDSRLQRKADPVSVFDDDLHHFIDDLTETMYAGPGGVGIAAPQVDRAQRIVIVDV 64

Query: 63  ---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              L D  H    MV INP++  + +   V +EGC+S+PD+  +V R+  I V+  D   
Sbjct: 65  RPKLGDDCH--GLMVLINPELAAW-EGMVVGREGCMSVPDFTGNVIRAERIQVQAQDVLG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           + +    +G  A  +QHE+DHL+G+LF+D L   K D+  +K
Sbjct: 122 RERSYECEGFEARAVQHEMDHLDGLLFLDRLVSRKVDLFRRK 163


>gi|222824460|ref|YP_002576034.1| peptide deformylase [Campylobacter lari RM2100]
 gi|222539681|gb|ACM64782.1| peptide deformylase [Campylobacter lari RM2100]
          Length = 173

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 5/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M++K ++ +P+P L   S  +E  + D+  L+D+M E M    G+GLAA+Q+ V  R ++
Sbjct: 1   MIRK-IITYPNPRLFLESEKVENFDKDLHVLLDDMYETMIENKGVGLAAIQVDVPIRALL 59

Query: 61  IDLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +D+ D       ++  +  INP I    D+     EGCLSIP +  DV R   I + Y D
Sbjct: 60  VDIGDEEGEQKDKQTLLEIINPIITPLDDEKISCNEGCLSIPGFYEDVMRYKNIQLDYQD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + Q + A   LA  +QHE+DHL+G LFI+ LS LKR
Sbjct: 120 RFGKPQSLQAHDFLAVAIQHEVDHLDGHLFIEKLSFLKR 158


>gi|223936792|ref|ZP_03628702.1| peptide deformylase [bacterium Ellin514]
 gi|223894643|gb|EEF61094.1| peptide deformylase [bacterium Ellin514]
          Length = 191

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 16/169 (9%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           P+LR+    + ++ S+I   I +M E MY + GIGLAA Q+    ++ VID++    R +
Sbjct: 11  PVLRKKGEKVTRVTSEIKQFIKDMFETMYESRGIGLAAQQVARAVQITVIDVRGITDRPS 70

Query: 72  ---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                          P+V INP++       +   EGCLS P+  A++ R   + V  M+
Sbjct: 71  TLELNGKPASVEKFMPLVLINPEVKPVGPKVA-GTEGCLSFPEIFAEITRPETVDVVAMN 129

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            N +     A GLLA  +QHE DHLNGILFID +    +  +  ++ +L
Sbjct: 130 ENGERIEFRAGGLLARAVQHETDHLNGILFIDRMDTETKQELKPELEEL 178


>gi|168183924|ref|ZP_02618588.1| peptide deformylase [Clostridium botulinum Bf]
 gi|182672944|gb|EDT84905.1| peptide deformylase [Clostridium botulinum Bf]
          Length = 150

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+T+ G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|119952868|ref|YP_945077.1| peptide deformylase [Borrelia turicatae 91E135]
 gi|119861639|gb|AAX17407.1| peptide deformylase [Borrelia turicatae 91E135]
          Length = 165

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ +  I++++ N    M+ +M + +G+GLAA Q+G+   + V+  ++
Sbjct: 3   IVCYPNDLLRIKTKTVLNIDNELRNTAFKMVNLMDAKNGVGLAASQVGLDLSIFVV--RE 60

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +A  K P++FINP I   S +  +Y+EGCLSIP    D+ R   I V   D N +   I 
Sbjct: 61  NAMSK-PLIFINPLITETSFELVLYKEGCLSIPGVYYDLLRPKSIIVEAYDENGEFFKIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSK 164
           + GLLA  +QHE+DHL G+LFID+   +L+ +++   M K
Sbjct: 120 SSGLLARIVQHEMDHLKGVLFIDYYEDKLRNNLLRSYMKK 159


>gi|307155367|ref|YP_003890751.1| peptide deformylase [Cyanothece sp. PCC 7822]
 gi|306985595|gb|ADN17476.1| peptide deformylase [Cyanothece sp. PCC 7822]
          Length = 175

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 7/157 (4%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           +PILR+ ++P+E I ++ I  LID+++    S +G+G+AA Q+   YR+ ++  +     
Sbjct: 12  NPILRQNAQPVEDITDTAIQQLIDSLIATAASANGVGIAAPQVSQSYRVFIVASRPSPRY 71

Query: 70  KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            N     P   INPKII +S +     EGCLS+P  R  V R   ITV Y+D     Q  
Sbjct: 72  PNAPEMVPTAMINPKIIAYSAERVKGWEGCLSVPGVRGLVPRYQAITVEYLDRQGNLQRQ 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                +A   QHELDHL+G++F+D L    RD+ T++
Sbjct: 132 EFTDFVARIFQHELDHLDGMVFVDRLES-TRDLYTEQ 167


>gi|225849674|ref|YP_002729908.1| peptide deformylase [Persephonella marina EX-H1]
 gi|225646510|gb|ACO04696.1| peptide deformylase [Persephonella marina EX-H1]
          Length = 169

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M K  ++ +PD  L++VS+P+E    D  + ++ +L  M  S  G+G+AA Q+    + +
Sbjct: 1   MEKFEILTYPDERLKKVSKPVEDFGRDFKDFVERLLYTMRNSPAGVGIAAPQVNRHIQTI 60

Query: 60  VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++D  ++ H+ N      M+  NP+II +  +  V +EGCLS+PD+  +VKR  +I V  
Sbjct: 61  IVDASEYKHKYNKTNHGLMILSNPRIIAYDGEI-VIREGCLSVPDFTGNVKRHYWIKVEA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            D +        +G  A  +QHE+DHL G LF+D +   K D+  +K+ K
Sbjct: 120 EDIDGNTITFDTEGFEAVVIQHEMDHLKGKLFLDRVVSPK-DIFKRKVYK 168


>gi|295394412|ref|ZP_06804636.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972764|gb|EFG48615.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 193

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V++ +P+L R + P+ +   ++  L+ +M E + +++G+GLAA QIGV  ++ V
Sbjct: 1   MAIHPIVVYGEPVLHRKADPVTEFGDELHTLVADMYETLTASNGVGLAAPQIGVGKQIYV 60

Query: 61  IDLQDH-AHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D  A  +   VFINP     K+ T + D S   EGCLS+P     +KR+  +TV  
Sbjct: 61  YDADDEVAGVRRRGVFINPVLVASKVPTTNPDPSEDTEGCLSVPVLDYPLKRADKVTVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D N Q   +  +G  A  +QHE DHL+G L++D L         K+  K
Sbjct: 121 VDENNQPVSLSVEGWFARIMQHEFDHLHGTLYVDRLDTRWAKRWKKEQKK 170


>gi|163848638|ref|YP_001636682.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl]
 gi|222526574|ref|YP_002571045.1| peptide deformylase [Chloroflexus sp. Y-400-fl]
 gi|254767575|sp|A9WHG7|DEF_CHLAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767577|sp|B9LBS4|DEF_CHLSY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|163669927|gb|ABY36293.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl]
 gi|222450453|gb|ACM54719.1| peptide deformylase [Chloroflexus sp. Y-400-fl]
          Length = 188

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 14/168 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-- 70
           IL+   RP++  + ++  L+ +M E M +  G+GLAA QIG+  +L +I++      +  
Sbjct: 17  ILKMQCRPVKLPDRNLKQLVADMFETMRAAHGVGLAAPQIGIPIQLCIIEIPAEYEERAD 76

Query: 71  ---------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                     P V INP+I+  S +  +  EGCLS+P +   V R  ++TV + D N +H
Sbjct: 77  GSVVEVAPAEPYVLINPRIVKMSGEEVMRDEGCLSLPGWYGMVPRQTWVTVEFQDLNGKH 136

Query: 122 QIIYADG-LLATCLQHELDHLNGILFIDHLSRLK--RDMITKKMSKLV 166
             +   G LL   +QHE+DHLNGILF + +  L   RD+  ++ ++ V
Sbjct: 137 HRLRRAGDLLGWAIQHEVDHLNGILFTERIRDLSTLRDITKERDAQPV 184


>gi|282877697|ref|ZP_06286512.1| peptide deformylase [Prevotella buccalis ATCC 35310]
 gi|281300269|gb|EFA92623.1| peptide deformylase [Prevotella buccalis ATCC 35310]
          Length = 176

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 7/162 (4%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ----DHAH 68
           +LR+V++ I      +  LI +M E + S+DGIGLAA QIG   R+VVIDL     D   
Sbjct: 1   MLRKVAQDITPEYEGLGQLIQDMFETLDSSDGIGLAAPQIGKSIRVVVIDLNVLSDDFPE 60

Query: 69  RKN-PMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            K+    +INP II   ++       EGCLSIP     V R+  I V+YMD +      +
Sbjct: 61  YKDFRRAYINPHIIEIDENAPKESMDEGCLSIPGIHEAVSRTTRIHVQYMDEDFTPHDEW 120

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G LA  +QHE DHL+G +F+D +S  ++ MI  K+  + Q
Sbjct: 121 IEGYLARVMQHEFDHLDGKMFVDRISPFRKQMIKNKLKGMTQ 162


>gi|209549461|ref|YP_002281378.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535217|gb|ACI55152.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 164

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P++ +P P L+ V  P+   +S +  L D++L  M +  G+G+ A  IGV  RL V++L
Sbjct: 4   RPILRYPHPGLKTVCAPVTVFDSSLAALADDLLATMRAAPGVGITAAHIGVFTRLTVLEL 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                 +   +++NP+I  FS +   + EG +S+P    +V R   I  RY D       
Sbjct: 64  DKTDGVR---LYVNPEITWFSKETMSHAEGSVSMPGATDEVTRPRSIRFRYQDAEGGMHE 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             AD  LA C+QHE+D LNGI ++  LSRLKRD + KK  K
Sbjct: 121 DVADDFLAICIQHEVDQLNGIFWLQRLSRLKRDRLVKKWEK 161


>gi|262341227|ref|YP_003284082.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272564|gb|ACY40472.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 171

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+VI+ +PILR+    I+      +I  LI +M E ++   GIGLAA QIG   RL +++
Sbjct: 4   PIVIYGNPILRKKCLDIDLCSCKKEINQLIKDMFETIHQAKGIGLAAPQIGKNIRLFIVE 63

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              +   K   VFIN KI+        + EGCLSIP     VKR + + + Y D N + Q
Sbjct: 64  -TPYLDGKYKEVFINAKILKIHGKEYKFNEGCLSIPGIMGYVKRKSNVLIEYYDHNWKKQ 122

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                G+ A  + HE DHL+G LFID+ S  ++  I KK+  L +
Sbjct: 123 KKTLTGICARVILHEYDHLDGKLFIDYFSSTRKKRIEKKLISLSE 167


>gi|325290451|ref|YP_004266632.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965852|gb|ADY56631.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 150

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 86/143 (60%), Gaps = 6/143 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V   + ILR  ++ ++KI  +I+ L++N+ + +Y++ G+GLAA QIG+  R+ V+D+ D
Sbjct: 6   IVKMGEDILREKAQEVKKITPNILKLLENLTDTLYASQGVGLAAPQIGISKRVAVVDIGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                     INP II    +  + +EGCLSIP  + +VKRSA + V+  D         
Sbjct: 66  GLFE-----LINPVIIERYGE-EIDKEGCLSIPGIQGEVKRSAKVVVQCQDREGNLVQYA 119

Query: 126 ADGLLATCLQHELDHLNGILFID 148
            +G LA   QHE+DHL+G+LF+D
Sbjct: 120 GEGFLARAFQHEIDHLDGVLFVD 142


>gi|309789939|ref|ZP_07684515.1| peptide deformylase [Oscillochloris trichoides DG6]
 gi|308227959|gb|EFO81611.1| peptide deformylase [Oscillochloris trichoides DG6]
          Length = 185

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 16/158 (10%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN-- 71
           L+   RP++  + ++  L+ +M E M  + G+GLAA Q+G+  +L +I++     +++  
Sbjct: 18  LKMQCRPVKLPDRNLKQLVADMFETMRKSHGVGLAAPQVGLPIQLCIIEIPAEIEQRDDG 77

Query: 72  ---------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA-QH 121
                      V INP+I+  S D  +  EGCLS+P +   V R +++TV Y D N  QH
Sbjct: 78  TEVEVAPAEEYVLINPRIVKTSGDEIMRDEGCLSLPGWYGMVPRHSWVTVEYQDFNGKQH 137

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           ++  ADGLL   +QHE+DHL+G+LF + +    RD+ T
Sbjct: 138 RLRKADGLLGWAIQHEVDHLHGVLFTERI----RDLST 171


>gi|257057414|ref|YP_003135246.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
 gi|256587286|gb|ACU98419.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
          Length = 183

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L + +R +   + ++  L+++M E MY+ +G+GLAA QIGV  R+ V
Sbjct: 1   MTIHPICIVGEPVLHKPTREVSSFDDELATLVEDMFETMYAAEGVGLAANQIGVDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NPK+ T        D     EGCLS+P       R+++  V   
Sbjct: 61  YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDNDWEGCLSVPGESFPTGRASWAKVTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
           D       +   G  A CLQHE DHL+G L++D L  R  R    KKM K
Sbjct: 121 DVEGNPVEVEGTGYFARCLQHETDHLDGYLYLDRLIGRHAR--AAKKMLK 168


>gi|53804337|ref|YP_113830.1| peptide deformylase [Methylococcus capsulatus str. Bath]
 gi|53758098|gb|AAU92389.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
          Length = 191

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +P+LR+ +RP+  E+I S  +  LI +M E M    G+GLAA QIG   +L VI+ +   
Sbjct: 15  EPVLRQRARPLSPEEIRSAAVQALIGHMRETMRDAPGVGLAAPQIGQGLQLAVIEDRADY 74

Query: 68  HR-----------KNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           HR           + P+ F   +NP+I+  S++  V+ EGCLS+  + A V+R+ ++ V 
Sbjct: 75  HRGLSAEELAARGREPVPFHVIVNPEIVARSEETDVFHEGCLSLAGFSARVERARWVRVS 134

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D   + Q I A G  A  LQHE+DHL+G L+ID +
Sbjct: 135 CLDHRGEPQTIEASGWYARILQHEIDHLHGRLYIDRM 171


>gi|82523804|emb|CAI78547.1| polypeptide deformylase [uncultured Chloroflexi bacterium]
          Length = 176

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 9/159 (5%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  PDP+LRR +R +     ++  LID+M+E M S  G+GLAA Q+   ++++ I+  +
Sbjct: 6   IVFTPDPVLRRKARKVTDFGPELQTLIDDMVETMRSAPGVGLAAPQVAESWQVITIEYSE 65

Query: 66  HAH-------RKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +        +  P ++  +NP+I   S++  V  EGCLS+P    +V+R+  +TV+  +
Sbjct: 66  ESEEGEEGEEKVPPKLYTLVNPQITRASNETIVGTEGCLSVPGIVGEVERNEAVTVKAQN 125

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              Q   I A   LA   QHE+DHL G+LF D    L R
Sbjct: 126 RRGQPVTIKAQDWLARIFQHEIDHLEGVLFTDLTDELWR 164


>gi|187777638|ref|ZP_02994111.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC
           15579]
 gi|187774566|gb|EDU38368.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC
           15579]
          Length = 150

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + IF D ILR+ S+ +E ++  I  ++++M + MY+T+ G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRIFDDEILRKKSKVVEVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    +KR   +T++ ++   
Sbjct: 61  VIDMG-----QGLIKLVNPKIINKEGTQEVI-EGCLSIPNTWGKLKRPKKVTIQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|269219486|ref|ZP_06163340.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211065|gb|EEZ77405.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 161

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR    PI++I   +  L+++++E +      GLAA QIGV  R   
Sbjct: 1   MTFRPIRIVGDPVLRTPCSPIDEITPGVKALVEDLVENVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +++           +NP I+  SDD F   +EGCLS+PD     KRS +      D + 
Sbjct: 61  WNIEGEIG-----YILNPVIVELSDDEFQDGEEGCLSVPDLWFPTKRSLYARAEGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + +++  +GL+  C+QHE+DHL+G L+ID L R  R    + +  L
Sbjct: 116 RKKVVEGEGLMGRCIQHEVDHLDGHLYIDRLDRETRKKAMRAIRDL 161


>gi|68536091|ref|YP_250796.1| peptide deformylase [Corynebacterium jeikeium K411]
 gi|68263690|emb|CAI37178.1| polypeptide deformylase [Corynebacterium jeikeium K411]
          Length = 168

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 10/160 (6%)

Query: 9   FPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64
           F DP+L+ V+ P+  E+I ++    L+++MLE M    G+GLAA QIG+  R+ V D   
Sbjct: 9   FGDPVLKTVADPVKPEQIQDAGTRRLVEDMLETMDHYGGVGLAANQIGITRRIFVFDCDG 68

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D  H       INP      ++     EGCLSIPD   DV R+  + +R +  + +    
Sbjct: 69  DRGH------VINPTWEAVGEETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTVDGEQVDR 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               L+A C+QHE DHL+G+LFI HLS  +R    K++ +
Sbjct: 123 EVTDLMARCVQHETDHLDGVLFIQHLSTEQRREAMKQIRE 162


>gi|325292946|ref|YP_004278810.1| polypeptide deformylase [Agrobacterium sp. H13-3]
 gi|325060799|gb|ADY64490.1| polypeptide deformylase [Agrobacterium sp. H13-3]
          Length = 164

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L  +  P+   +  + NL+ ++++ M +  G+G+ A  IGV  R+ V
Sbjct: 1   MAIRPILSYPHAGLSEICAPVTVFDDHLQNLVTDLIDTMRAAPGVGITAAHIGVKQRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L         + +INP+I++ S     + EG +S+P +  +V+R + + VR+ D    
Sbjct: 61  LELTP----GTVLTYINPEIVSHSAQTMRHVEGSVSMPGFTEEVERPSEVEVRFQDVAGV 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A    A C+QHE+D L+G+ ++  LS+LKRD + KK  K
Sbjct: 117 EHRESAKAFHAICIQHEIDQLDGVFWLKRLSKLKRDRLVKKWEK 160


>gi|298246394|ref|ZP_06970200.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
 gi|297553875|gb|EFH87740.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
          Length = 169

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 92/151 (60%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   +PILR+ ++ + + ++ +  L+D+M E M++++G+GLAA QI +  R+ V
Sbjct: 1   MAMRQIITSENPILRQKAKKVHRFDASLQKLVDDMFETMHASNGVGLAAPQIALSIRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDCNA 119
            + +        +   NP+I+  ++     QEGCLSIP Y   +++R+A I V+ +D   
Sbjct: 61  AEYEGRR-----VAIFNPEIVK-AEGEERGQEGCLSIPGYLGNNIRRAAKIVVKGVDVKG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +   + A+G  A  LQHE+DHL+GILF+D L
Sbjct: 115 KPVRVNAEGWFARILQHEIDHLDGILFLDRL 145


>gi|291296560|ref|YP_003507958.1| peptide deformylase [Meiothermus ruber DSM 1279]
 gi|290471519|gb|ADD28938.1| peptide deformylase [Meiothermus ruber DSM 1279]
          Length = 194

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 15/160 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-VVIDL 63
           P+ ++ DP+L++ + P++   S I  L +NMLE M+   G+GLAA Q+GV  RL V  + 
Sbjct: 6   PIRLYGDPVLKKKALPVQDF-SGIPQLAENMLETMFEARGVGLAAPQVGVSQRLFVAAEY 64

Query: 64  QDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFIT 111
            D    + P            V +NP +IT+        EGCLS+P  Y    +R   + 
Sbjct: 65  LDDDEEEGPEADLKTRVKQLYVMVNP-VITYRAGRQSILEGCLSLPGLYAEGAQRDLQVR 123

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V Y D + Q +++ A+G LA  +QHE+DHL+GILF   +S
Sbjct: 124 VEYQDEHGQKKVLEAEGYLAVVMQHEIDHLDGILFFQRMS 163


>gi|326790873|ref|YP_004308694.1| peptide deformylase [Clostridium lentocellum DSM 5427]
 gi|326541637|gb|ADZ83496.1| peptide deformylase [Clostridium lentocellum DSM 5427]
          Length = 149

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           + +LR++S+P++  +  +  L+D+M E MY  +G+G+AA Q+G+L R  ++D+ +     
Sbjct: 8   EEVLRKISKPVKSFDESLWTLLDDMKETMYLAEGVGIAAPQVGLLKRAFIVDIGE----- 62

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+ F+NP+I+    +  + +EGCLS+P     V+R  ++ +R  D N     I     +
Sbjct: 63  GPVEFVNPEILAVEGE-QLGEEGCLSVPKRYGTVRRPNYVKMRAQDRNGNVFEIEGKEFM 121

Query: 131 ATCLQHELDHLNGILFID 148
           A  + HE DHL G LF+D
Sbjct: 122 ARAMLHEFDHLEGKLFVD 139


>gi|329120996|ref|ZP_08249627.1| peptide deformylase [Dialister micraerophilus DSM 19965]
 gi|327471158|gb|EGF16612.1| peptide deformylase [Dialister micraerophilus DSM 19965]
          Length = 153

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 9/140 (6%)

Query: 13  ILRRVSRPIEK----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +LR V++P+ +     +  + +LI +M + MY+ +G+GLAA QIG+  R+ V D  +   
Sbjct: 11  VLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFVADCNEGFD 70

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                V+INP+     D   +  EGCLS+ D   +V+R A + V+Y D   + +   A G
Sbjct: 71  -----VYINPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGKRKQKKATG 125

Query: 129 LLATCLQHELDHLNGILFID 148
           L A C+QHE+DHLNG LFID
Sbjct: 126 LFARCVQHEIDHLNGTLFID 145


>gi|289705546|ref|ZP_06501938.1| peptide deformylase [Micrococcus luteus SK58]
 gi|289557775|gb|EFD51074.1| peptide deformylase [Micrococcus luteus SK58]
          Length = 191

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 79/150 (52%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+   PDP+LR  + P+    +D+  L+ +M+  M++  G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPVRTVPDPVLRTAASPVPA-GADVRALVTDMIATMHAVGGVGLAAPQVGVGLRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+   A        +NP + T         EGCLS+P  R    R+A   VR  D +  
Sbjct: 60  FDVAGVAGH-----VVNPVLETAGQALREPGEGCLSVPGLRYHPARAAEAVVRGTDVDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
                  GLLA CLQHE DHL+GIL++D L
Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRL 144


>gi|15618975|ref|NP_225261.1| peptide deformylase [Chlamydophila pneumoniae CWL029]
 gi|15836598|ref|NP_301122.1| peptide deformylase [Chlamydophila pneumoniae J138]
 gi|16753049|ref|NP_445322.1| peptide deformylase [Chlamydophila pneumoniae AR39]
 gi|6225254|sp|Q9Z6J2|DEF_CHLPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|4377403|gb|AAD19204.1| Polypeptide Deformylase [Chlamydophila pneumoniae CWL029]
 gi|7189698|gb|AAF38582.1| polypeptide deformylase [Chlamydophila pneumoniae AR39]
 gi|8979440|dbj|BAA99274.1| polypeptide deformylase [Chlamydophila pneumoniae J138]
          Length = 186

 Score =  103 bits (258), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 6/155 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---- 61
           L  +  PILR+ S PI +I  +I NL+ +M + M +  G+GLAA Q+G    L V+    
Sbjct: 5   LEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVMCVDR 64

Query: 62  DLQDHA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           + +D      ++P VFINP +   S+   + +EGCLSIP  R +V R   ITV  MD N 
Sbjct: 65  ETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAMDLNG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           +    + +G  A  + HE DHLNG+L+ID +   K
Sbjct: 125 KIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPK 159


>gi|220926453|ref|YP_002501755.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
 gi|219951060|gb|ACL61452.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
          Length = 165

 Score =  103 bits (258), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 94/161 (58%), Gaps = 5/161 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           L+ +PDP LR+ + P    +  +  +  ++ E + +   IGL A   G+  R+ VI L  
Sbjct: 6   LLRYPDPRLRQPAPPAALPDPGVSAVAADLAETLAAHGAIGLTAPHAGLPVRVTVIRLGP 65

Query: 66  HAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            A    P+  ++NP+++  S + + ++EG +++P    +V+R A + VR+ D +   + I
Sbjct: 66  DA----PLATYVNPEVVWASSETARHREGSVAMPGVDEEVERPARVRVRFQDLDGTPRQI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            A+G LA CLQHE+D L+G+ + + LSRLKR+ + K+  K+
Sbjct: 122 AAEGFLAACLQHEIDQLDGVFWTERLSRLKRERLLKRFGKV 162


>gi|260578786|ref|ZP_05846693.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
 gi|258603084|gb|EEW16354.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
          Length = 168

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 10/160 (6%)

Query: 9   FPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64
           F DP+L+ V+ P+  E+I ++    L+++MLE M    G+GLAA QIG+  R+ V D   
Sbjct: 9   FGDPVLKTVADPVKPEQIQDAATRRLVEDMLETMDHYGGVGLAANQIGITRRIFVFDCDG 68

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D  H       INP      D+     EGCLSIPD   DV R+  + +R +  + +    
Sbjct: 69  DRGH------VINPTWEAVGDETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTVDGEQVDR 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               L+A C+QHE DHL+G LFI HLS  +R    K++ +
Sbjct: 123 EVTDLMARCVQHETDHLDGTLFIQHLSAEQRREAMKQIRE 162


>gi|326798672|ref|YP_004316491.1| peptide deformylase [Sphingobacterium sp. 21]
 gi|326549436|gb|ADZ77821.1| Peptide deformylase [Sphingobacterium sp. 21]
          Length = 189

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 96/177 (54%), Gaps = 12/177 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P++ +    LR+    +     D+ + I N+ + + +  G+GLAA Q+    +L V+D  
Sbjct: 4   PILAYGATNLRKACLTVSPSYPDLNSFIKNLWQTLDNAQGVGLAAPQVNENIQLFVVDSR 63

Query: 63  -------LQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                   +D A +  P +   FINPKI+  SD+  + +EGCLSIP     VKR ++I +
Sbjct: 64  ISFSSVNTEDMAQKDYPGIRQAFINPKIVAHSDEMELDEEGCLSIPGISFPVKRFSWIKM 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Y+D N Q    Y  G  A  +QHE DH+ G L ID+LS L++ MI KK++K+   R
Sbjct: 124 TYLDENFQLHTDYFYGRTARIIQHEYDHILGKLPIDYLSELQKLMINKKLNKIRNGR 180


>gi|33242441|ref|NP_877382.1| peptide deformylase [Chlamydophila pneumoniae TW-183]
 gi|33236952|gb|AAP99039.1| polypeptide deformylase [Chlamydophila pneumoniae TW-183]
          Length = 204

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 85/155 (54%), Gaps = 6/155 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           L  +  PILR+ S PI +I  +I NL+ +M + M +  G+GLAA Q+G    L V+ +  
Sbjct: 23  LEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVMCVDR 82

Query: 66  HAH------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                     ++P VFINP +   S+   + +EGCLSIP  R +V R   ITV  MD N 
Sbjct: 83  ETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAMDLNG 142

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           +    + +G  A  + HE DHLNG+L+ID +   K
Sbjct: 143 KIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPK 177


>gi|291458602|ref|ZP_06597992.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419135|gb|EFE92854.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 169

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 4/148 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPIL +  + I+ +      LI +ML+ MY  +G+GLAA Q+GVL R+ VID+ D     
Sbjct: 11  DPILEKECKEIKNVTERTRELIRDMLDTMYEANGVGLAAPQVGVLRRVFVIDIGDEKR-- 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              V INP++    ++     EGCLS+P     V R   + V+  D + +     A+GLL
Sbjct: 69  --YVCINPEVSVLGEELQTGPEGCLSVPGKEGTVTRPMRVHVKAKDIDFKDYEFDAEGLL 126

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMI 158
           A  + HE DHLNG+++   +    RD++
Sbjct: 127 ARAVSHENDHLNGVMYTTRVEGELRDVV 154


>gi|305680739|ref|ZP_07403546.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
 gi|305658944|gb|EFM48444.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
          Length = 169

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 5/157 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + IF DP+L   +  I   +  + +L+++ML+ M +  G+GLAA QIGVL R+ V
Sbjct: 1   MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMLDTMDAAGGVGLAANQIGVLRRVFV 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D   ++   R +    INP+     ++  +  EGCLSIP+  AD +R   + V   D +
Sbjct: 61  FDCTTEEDGMRGH---IINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYD 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                I A GL+A C+QHE DHL+G+LF+  L+  +R
Sbjct: 118 GNPLTITASGLMARCIQHETDHLDGVLFLRRLTPERR 154


>gi|225850189|ref|YP_002730423.1| peptide deformylase [Persephonella marina EX-H1]
 gi|225646575|gb|ACO04761.1| peptide deformylase [Persephonella marina EX-H1]
          Length = 176

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 5/160 (3%)

Query: 9   FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---Q 64
           +PD IL++  + ++   +  +   +D M + MY  DG+GLAA QIG+ YR++VID    +
Sbjct: 8   WPDKILKQKMKEVDFFSDGKLKEYVDVMFKKMYELDGVGLAANQIGIPYRIIVIDTTVRE 67

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +   +V INP+I+    +     EGCLS P  +  + R+  + V+  D N     I
Sbjct: 68  EEGEKGVKLVLINPQIVEKEGEIE-STEGCLSFPGVQITIPRAERVKVKAKDINGNDIEI 126

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                L+  LQHE+DH+NGI FI++L  +K+ M+ +K  K
Sbjct: 127 EGKDFLSVVLQHEIDHINGIPFINYLPPVKKRMVLEKYMK 166


>gi|148380240|ref|YP_001254781.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|153933663|ref|YP_001384545.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|153937608|ref|YP_001388061.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|148289724|emb|CAL83829.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929707|gb|ABS35207.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|152933522|gb|ABS39021.1| peptide deformylase [Clostridium botulinum A str. Hall]
          Length = 150

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+T+ G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    V R A +TV+ ++ + 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGRVIRPAKVTVQALNEDG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|260588060|ref|ZP_05853973.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|331082371|ref|ZP_08331497.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260541587|gb|EEX22156.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|330400857|gb|EGG80458.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 159

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 5/138 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D IL +  R +EK+   I  LID+M + MY   G+GLAA Q+G+L ++VVID       +
Sbjct: 11  DDILTKECRKVEKMTPKIRELIDDMFDTMYEAYGVGLAAPQVGILKQIVVIDTTG----E 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +P+V INP+II  S      +EGCLS+P     V R  ++ VR  D + Q  I+  + LL
Sbjct: 67  DPIVLINPEIIETSGS-QTGEEGCLSVPGMSGVVTRPNYVKVRAFDEDMQEFILEGEELL 125

Query: 131 ATCLQHELDHLNGILFID 148
           A  + HE DHL+G L+ +
Sbjct: 126 ARAICHETDHLHGRLYTE 143


>gi|210622388|ref|ZP_03293141.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275]
 gi|210154270|gb|EEA85276.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275]
          Length = 146

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +P+LR+  +P+ K +  +  L+D+M + MY  DG+GLAA Q+G+L R VVID+ +     
Sbjct: 11  EPVLRKKCKPVTKFDEKLGQLLDDMADTMYEADGVGLAAPQVGMLKRAVVIDIGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+II  + + +   EGCLS+ +    V R  F+ V+  D + +   +  + LL
Sbjct: 66  GLIELINPEIIETAGEQTDI-EGCLSVDNINEPVTRPYFVKVKAQDRHGKEFELAGEELL 124

Query: 131 ATCLQHELDHLNGILFIDHLSR 152
           A    HELDHL+GILF+D + +
Sbjct: 125 ARAFCHELDHLDGILFVDRIEK 146


>gi|87308719|ref|ZP_01090858.1| peptide deformylase [Blastopirellula marina DSM 3645]
 gi|87288430|gb|EAQ80325.1| peptide deformylase [Blastopirellula marina DSM 3645]
          Length = 194

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 1/146 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P P LR  S+P++++++D+  ++  M E+MY   GIGLAA Q+ +  RL V +L  
Sbjct: 5   VVHYPHPTLRYQSKPVKRVDADLRKIVAEMFELMYENRGIGLAANQVDLPIRLFVANLSG 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +VFINP +I+        +EGCLS+P     VKR A I     +   +     
Sbjct: 65  TKGEGEELVFINP-VISRPKGNEEEEEGCLSLPQVFGPVKRPAEIQFDAYNLQGELFSQR 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
            DG+LA  +QHE DHL+GI+F D + 
Sbjct: 124 IDGMLARVVQHETDHLDGIMFFDRMQ 149


>gi|86357835|ref|YP_469727.1| peptide deformylase [Rhizobium etli CFN 42]
 gi|86281937|gb|ABC91000.1| peptide deformylase protein [Rhizobium etli CFN 42]
          Length = 164

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V +P+   ++ +  L +++L  M +  G+G+ A  IGVL R+ V
Sbjct: 1   MPVRPILRYPHPGLKTVCQPVTAFDASLAALAEDLLATMRAAPGVGITAAHIGVLLRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L D A      +++NP+I   S +   + EG +S+P    +V R   I  RY D    
Sbjct: 61  LEL-DRA--DGVRLYVNPQITWRSQETISHAEGSVSMPGATEEVTRPRAIRFRYQDAGGI 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+G LA C+QHE+D L+GI ++  LSRLKR+ + KK  K
Sbjct: 118 VHEKAAEGFLAICVQHEVDQLDGIFWLQRLSRLKRERLVKKWEK 161


>gi|153953994|ref|YP_001394759.1| peptide deformylase [Clostridium kluyveri DSM 555]
 gi|219854608|ref|YP_002471730.1| hypothetical protein CKR_1265 [Clostridium kluyveri NBRC 12016]
 gi|146346875|gb|EDK33411.1| Hypothetical protein CKL_1369 [Clostridium kluyveri DSM 555]
 gi|219568332|dbj|BAH06316.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 147

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ + D +LR+ SR I+ IN  I+ L+D+M E +Y   G+GLAA Q+GVL R VV
Sbjct: 1   MALRNVIKYGDELLRKKSRKIDVINDRILTLLDDMEETLYKECGVGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      INP+II +S+   +  EGCLSIP+ + +VKR   + V+ ++   +
Sbjct: 61  IDIGEGIFK-----LINPEII-YSEGSYIDVEGCLSIPEIQGEVKRPKKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             II  + LLA    HE+DHL+GILF+D +
Sbjct: 115 EVIIEGEDLLARAFCHEIDHLDGILFVDKM 144


>gi|163751756|ref|ZP_02158973.1| peptide deformylase [Shewanella benthica KT99]
 gi|161328320|gb|EDP99480.1| peptide deformylase [Shewanella benthica KT99]
          Length = 114

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 72/113 (63%), Gaps = 3/113 (2%)

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +G  + ++VIDL +   R  P V INP+I+    DF + +EGCLSIP YRA V RS  +T
Sbjct: 3   VGSQHAILVIDLSEE--RDQPQVLINPEIVATEGDF-IGEEGCLSIPGYRAKVARSEQVT 59

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           V+ +D   +   I  D  LA  LQHE+DHL GI+F DHLS+LK+ +  KK+ K
Sbjct: 60  VKALDRTGKPFDIETDTFLAIVLQHEIDHLQGIVFTDHLSKLKQQIALKKVKK 112


>gi|260890452|ref|ZP_05901715.1| hypothetical protein GCWU000323_01622 [Leptotrichia hofstadii
           F0254]
 gi|260859694|gb|EEX74194.1| peptide deformylase [Leptotrichia hofstadii F0254]
          Length = 171

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 5/157 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++  P LR  S  ++ ++  +   +D M+ +M   +G+GLAA Q+ +  R  V++   
Sbjct: 3   IVLYGHPTLREKSEKVDAVDDSLRETLDEMVALMRKANGVGLAANQVDIAKRFFVLE--- 59

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H       INP+I+ FS++ +  +EGCLSIP     V R A I V+Y++ N +  +  
Sbjct: 60  --HEGVVKKVINPEILEFSEEIADMEEGCLSIPGIYKKVNRPAKIKVKYLNENGEEVVEE 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            D + A   QHE DH+ GILF D LS + + ++ KK+
Sbjct: 118 LDEMWARAFQHEFDHIEGILFTDKLSVMNKRLVAKKL 154


>gi|312880068|ref|ZP_07739868.1| peptide deformylase [Aminomonas paucivorans DSM 12260]
 gi|310783359|gb|EFQ23757.1| peptide deformylase [Aminomonas paucivorans DSM 12260]
          Length = 181

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +FPDP+LR  +  +        + ++++   MY  DG+GLAA Q+G+  ++ V+D Q 
Sbjct: 21  ICVFPDPVLRVPTEKVADFGPSFQSFLEDLWNTMYLRDGVGLAAPQVGISRKVTVVDAQG 80

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                   V  NP+I+    + +V +EGCLS P     V R   I +RY +   +     
Sbjct: 81  QK-----FVLANPEILEREGE-TVAEEGCLSFPGIFVPVLRPTRIRLRYQNERGEPVERE 134

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               LA    HE+DHLNG L IDH+S L+R  I +K+ K     D
Sbjct: 135 VVDFLARVFSHEIDHLNGRLLIDHVSPLRRQFIQRKLRKAASEAD 179


>gi|168180757|ref|ZP_02615421.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|182668503|gb|EDT80482.1| peptide deformylase [Clostridium botulinum NCTC 2916]
          Length = 150

 Score =  103 bits (256), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+T+ G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCL+IP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLNIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|168055848|ref|XP_001779935.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668649|gb|EDQ55252.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 202

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++++PDP LR  ++ I+  +  +  L++ ML+VMY TDG+GLAA Q+GV  RL+V +   
Sbjct: 13  VILYPDPRLRAKNKFIKVFDDKLQQLVNEMLDVMYKTDGVGLAAPQVGVNVRLMVYNPSG 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP----------DYRADVKRSAFITVRYM 115
                   V +NP+I+ +     ++ EGCLS P             A+V+R   + +   
Sbjct: 73  ERGSGKEYVLVNPRIVKYGKSRDLFDEGCLSFPVLERGPNQSLTIEAEVERPKSVRIDAQ 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D   +   I      A   QHE DHL GIL+ D ++    D I  ++ KL +L
Sbjct: 133 DIKGKKFSINLKDFQARIFQHEYDHLEGILYFDRMTPEVLDTIRPELEKLEKL 185


>gi|157825792|ref|YP_001493512.1| polypeptide deformylase [Rickettsia akari str. Hartford]
 gi|157799750|gb|ABV75004.1| Polypeptide deformylase [Rickettsia akari str. Hartford]
          Length = 129

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 80/117 (68%), Gaps = 1/117 (0%)

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +G+L R+ +++L ++ ++ +P+V INP+I  FS+    + E  LS P   A + RS  I 
Sbjct: 2   VGILKRIAIVELHEN-NKSSPIVLINPEITYFSEAKQTFIECSLSFPGIEASITRSKVIK 60

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           V+Y+D +   Q + A+G LAT +QH++D+LNG  F+D+LS+LKRDM+ KKM K ++L
Sbjct: 61  VKYLDYDGNKQELDAEGFLATVIQHKIDYLNGKTFLDYLSKLKRDMLLKKMLKHIKL 117


>gi|126728525|ref|ZP_01744341.1| peptide deformylase [Sagittula stellata E-37]
 gi|126711490|gb|EBA10540.1| peptide deformylase [Sagittula stellata E-37]
          Length = 165

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 1/161 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PD  LR  S P+ +  S +  L+++M E MY+  G GLAA Q+GV  RL V+D  
Sbjct: 5   PILTWPDTGLRAASMPV-RAPSAVARLVEDMFETMYAAPGRGLAAPQVGVRSRLFVMDAT 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                K P V INP +          +E CLS+P     V R   I +RY D + +   +
Sbjct: 64  WKDGEKTPTVCINPVVAPLDGPEEPGEEACLSMPGVSVMVTRPTRIRLRYTDLDDKTHEV 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              G  A   QHE DHL+G++   HL   +R ++  +   L
Sbjct: 124 VLTGAAARIAQHETDHLDGVMHFQHLPLAERGVLLAEYEAL 164


>gi|19552813|ref|NP_600815.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|62390483|ref|YP_225885.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|145295722|ref|YP_001138543.1| peptide deformylase [Corynebacterium glutamicum R]
 gi|25452910|sp|Q8NQ46|DEF1_CORGL RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|21324370|dbj|BAB98994.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325820|emb|CAF21609.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032]
 gi|140845642|dbj|BAF54641.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 169

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 9/159 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + + +F DP+L  VSR  E ++ D  +  LID+M + M    G+GLAA Q+GVL R+
Sbjct: 1   MAVREVRLFGDPVL--VSRADEVVDFDESLSTLIDDMFDTMEDAGGVGLAANQVGVLRRV 58

Query: 59  VVIDLQDHAHRKNPMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            V D    +H++  +    INP     ++D    +EGCLSIPD  A+  R   + +   D
Sbjct: 59  FVFDT---SHQEGGLRGHVINPVWEPLTEDTQTGKEGCLSIPDVSAETTRYETVRLSGQD 115

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +       A+GLLA C+QHE DHL+G+LF+  L   +R
Sbjct: 116 RDGNPVGFVANGLLARCIQHETDHLDGVLFLKRLDPAER 154


>gi|295706332|ref|YP_003599407.1| peptide deformylase [Bacillus megaterium DSM 319]
 gi|294803991|gb|ADF41057.1| peptide deformylase [Bacillus megaterium DSM 319]
          Length = 157

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  LV  P+ +L +    ++  ++ +  L++ M ++M   DG+GLAA Q+GVL ++ V
Sbjct: 1   MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R   +  INP II    +  +  EGCLS P    DV R+ ++ VR  +   +
Sbjct: 61  VDVDD---RHGKIELINPVIIEQRGE-QIGPEGCLSFPGLFGDVARADYVKVRAQNRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A G LA  +QHE+DHL+G+LF + +++
Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148


>gi|300781120|ref|ZP_07090974.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
 gi|300532827|gb|EFK53888.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
          Length = 176

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ IF DP+L   +  I+  +  +  L+ +MLE M +  G+GLAA QIG+  R+ V
Sbjct: 1   MTVRPIRIFGDPVLNSEATRIDTFDEALRTLVSDMLETMDAAGGVGLAANQIGLTKRIFV 60

Query: 61  IDLQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D        N M    INP      D   +  EGCLSIP  +A+V+R   +  R  D  
Sbjct: 61  YDC-------NGMRGALINPVWEPIDDYVQIGPEGCLSIPGIQAEVERHENVIARGQDEF 113

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            +   I  +GLLA C+QHE DHL+G+LF   L RL+ ++  + M+
Sbjct: 114 GRPVAIRGNGLLARCIQHETDHLDGVLF---LRRLEPEVRKEAMA 155


>gi|62184939|ref|YP_219724.1| peptide deformylase [Chlamydophila abortus S26/3]
 gi|81312889|sp|Q5L6G8|DEF_CHLAB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62148006|emb|CAH63757.1| peptide deformylase [Chlamydophila abortus S26/3]
          Length = 184

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 6/157 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + L  +  P LRR +  I +I  +I  L  +M E M +  G+GLAA Q+G    L V+ +
Sbjct: 3   RELEYYGSPTLRRKAEAILEITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVSLFVMCV 62

Query: 64  QDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +      +      P V+INP +   S+D  + +EGCLSIP  RADV R   ITV+ ++ 
Sbjct: 63  EGETEDGDLIFCDFPKVYINPVLSNVSEDLVLGREGCLSIPGLRADVYRPRSITVKAINL 122

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           + Q    + +G  A  + HE DHLNGIL+ID +   K
Sbjct: 123 DGQEFTEHLEGFPARIVMHENDHLNGILYIDKMEEPK 159


>gi|302384945|ref|YP_003820767.1| peptide deformylase [Clostridium saccharolyticum WM1]
 gi|302195573|gb|ADL03144.1| peptide deformylase [Clostridium saccharolyticum WM1]
          Length = 151

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 7/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +  F D  LR  S+P+E++N  I  ++D+M E +++T +G  LAA Q+G+L RLV
Sbjct: 1   MALREIRTFDDNELRLKSKPVEQVNDRIRMILDDMAETLHNTPNGGALAANQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D   +      INP +I +S+      E CLS P     V+R   + V+ +D N 
Sbjct: 61  VIDLGDGVRK-----LINP-VILWSEGEQFEPEACLSFPGLWGKVRRPKSVVVKALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
             + I A   +A CL HE+DHL+GI+F D
Sbjct: 115 CERKIKASDFMAKCLCHEIDHLDGIVFTD 143


>gi|227503564|ref|ZP_03933613.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
 gi|227075600|gb|EEI13563.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
          Length = 171

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  + ++ DP+L   +  I   +S +  L  NML+ M +  G+GLAA Q+G+L R+ V
Sbjct: 1   MAELDIRLYGDPVLSSRAEEITTFDSSLRTLAQNMLDTMDAAGGVGLAANQVGILKRIFV 60

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            D     A  +   V INP      +D  V  EGCLSIP   AD  R   + V   D   
Sbjct: 61  YDCSPIQAGLRG--VLINPVWTPLGEDMQVGPEGCLSIPGISADTPRHNRVFVSGRDVEG 118

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +   + A GLLA C+QHE DHL+G+LF+  L    R
Sbjct: 119 RPVGMVASGLLARCIQHETDHLDGVLFLRRLGDADR 154


>gi|56419706|ref|YP_147024.1| peptide deformylase [Geobacillus kaustophilus HTA426]
 gi|56379548|dbj|BAD75456.1| polypeptide deformylase [Geobacillus kaustophilus HTA426]
          Length = 157

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V+ P+PIL +   P+   +  +  L+D+M E M + DG+GLAA QIGV  ++ V+D+ D
Sbjct: 6   IVMHPNPILEQPCAPVTIFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQVAVVDVGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R   +  INP +I    +  V  EGCLS P    +V R+ F+ VR  +   +   + 
Sbjct: 66  EHGR---IELINPVVIEARGE-QVDVEGCLSFPGLFGEVPRAKFVKVRAQNRRGRPFTLS 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A G LA  LQHE+DHL+G+LF   + R
Sbjct: 122 ATGFLARALQHEIDHLHGVLFTSKVIR 148


>gi|227549209|ref|ZP_03979258.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078663|gb|EEI16626.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 166

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 7/156 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+L     P+ + +  +  L+ ++L  M    G+GLAA Q+GV  R+ V
Sbjct: 1   MAVRPIRLFGDPVLNSAVAPVTRFDEALRVLVCDLLNTMDDAGGVGLAANQVGVDARVFV 60

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            D Q    H       INP   +  D+  + +EGCLS+P     V R   +  R +D + 
Sbjct: 61  FDCQGMRGH------IINPSWASAGDEVQIGREGCLSVPGISGPVSRYNRVVARGVDADG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +   I   GLLA C+QHE DHL+GI+F+  +    R
Sbjct: 115 RPLAISGTGLLARCIQHESDHLDGIMFMRRMDSAAR 150


>gi|239917583|ref|YP_002957141.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|281413931|ref|ZP_06245673.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|239838790|gb|ACS30587.1| peptide deformylase [Micrococcus luteus NCTC 2665]
          Length = 191

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 78/150 (52%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+   PDP+LR  + P+    +D+  L+ +M+  M++  G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPVRTVPDPVLRTAASPVPA-GADVRALVADMIATMHAVGGVGLAAPQVGVGLRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+   A        +NP + T         EGCLS+P  R    R A   VR  D +  
Sbjct: 60  FDVAGVAGH-----VVNPVLETAGQALREPGEGCLSVPGLRYHPARDAEAVVRGTDVDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
                  GLLA CLQHE DHL+GIL++D L
Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRL 144


>gi|89052958|ref|YP_508409.1| formylmethionine deformylase [Jannaschia sp. CCS1]
 gi|88862507|gb|ABD53384.1| formylmethionine deformylase [Jannaschia sp. CCS1]
          Length = 161

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++++PDP+L   S   + + +    LI ++ + MY+  G GLAA QIGVL R+ V+D+  
Sbjct: 6   VLLWPDPLL---SVVCDAVVAVDPELIKDLFDTMYAAKGRGLAAPQIGVLQRVFVVDVTW 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               ++P VFINP +    +D    +E CLSIPD    V R   +T+ +     +     
Sbjct: 63  KEGARDPRVFINPVVRDSGEDMRSMEEQCLSIPDLPMQVTRPTTLTLDWETPEGRKTTGT 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            DG LA C+ HELDHL+G +  DH S  +R
Sbjct: 123 FDGNLARCILHELDHLDGTVIFDHQSPARR 152


>gi|291536618|emb|CBL09730.1| peptide deformylase [Roseburia intestinalis M50/1]
          Length = 158

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+L +  R I ++   I  LID+ML+ MY  +G+GLA  Q+GVL R+VV
Sbjct: 1   MALRTIRIQGDPVLTKKCREINEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP I+  S +     EGCLS+P     V R  ++  R  D N +
Sbjct: 61  IDIGE-----GPVVMINPVILEKSGE-QTGDEGCLSLPGKAGTVTRPNYVKARAFDENME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              I    L+A  + HELDHL+G ++ +
Sbjct: 115 EYEIEGTELMARAICHELDHLDGHMYTE 142


>gi|94986391|ref|YP_605755.1| peptide deformylase [Deinococcus geothermalis DSM 11300]
 gi|94556672|gb|ABF46586.1| Peptide deformylase [Deinococcus geothermalis DSM 11300]
          Length = 216

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 30/173 (17%)

Query: 5   PLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           P+ ++ DP+LRR +RP++  ++          +  + + MLE M+   G+GLAA Q+G+ 
Sbjct: 9   PIRLYGDPVLRRKARPLQATDTLTVPGFGPQSVREVANTMLETMFEARGVGLAAPQVGLP 68

Query: 56  YRLVV---------------IDLQDHAHRKNPMVFINP--KIITFSDDFSVYQEGCLSIP 98
            R+ V               + L+    R+   V +NP   +I    D S YQEGCLSIP
Sbjct: 69  VRMFVAVEYEDDEEEQEGRDVPLKSRVLRE--FVMLNPVLTVIDKKKDRS-YQEGCLSIP 125

Query: 99  D-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             Y   V R+  + VRY D + Q + + AD  LA   QHE DHL+G+ F+D L
Sbjct: 126 GIYEEGVARARAVQVRYTDLDGQERTLEADDYLARVFQHETDHLDGVFFLDRL 178


>gi|56698050|ref|YP_168421.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
 gi|56679787|gb|AAV96453.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
          Length = 165

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 2/151 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PD  L     P+E I  D  +LI +M + MY+  G GLAA Q+GV+ R  V+D+ 
Sbjct: 5   PILTWPDARLSWRCDPVEGIVPD--DLIRDMFDTMYAAKGRGLAAPQVGVMQRFFVMDVG 62

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                 +PM  INP I+         +E CLSIP     V R   +TV++        + 
Sbjct: 63  WKEGPPSPMAMINPVIMAAERVPVEMEEVCLSIPGLSVPVTRPKAVTVQWTAPEGDIHMA 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             DG  A C+QHE DHLNG++ +DHL    R
Sbjct: 123 DFDGFEARCIQHEFDHLNGVVTLDHLDPRAR 153


>gi|311748398|ref|ZP_07722183.1| peptide deformylase [Algoriphagus sp. PR1]
 gi|126576910|gb|EAZ81158.1| peptide deformylase [Algoriphagus sp. PR1]
          Length = 184

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 87/151 (57%), Gaps = 8/151 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
           P+V + +PIL++ +  I +  + +  +I NM   M + +G+GLAA QI    RL VID  
Sbjct: 4   PIVAYGNPILKKEADEINE-GTALDEMIQNMFATMDNANGVGLAAPQINEGVRLFVIDSN 62

Query: 63  --LQDHAHRKN-PMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
             L +    K     FINP I+  + DD+S ++EGCLSIPD RA++ R   +T+ Y D N
Sbjct: 63  LMLDEEDEEKGIRKAFINPIILDEYGDDYS-FEEGCLSIPDVRAEITRPEKLTIEYFDEN 121

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDH 149
                    G+ A  +QHE DHL GILF+D+
Sbjct: 122 WNLHEEEFSGMTARVIQHEYDHLEGILFVDY 152


>gi|254384637|ref|ZP_04999976.1| peptide deformylase 1 [Streptomyces sp. Mg1]
 gi|194343521|gb|EDX24487.1| peptide deformylase 1 [Streptomyces sp. Mg1]
          Length = 214

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ +  +P+L R  + + +   D+  LID+M     + +G+GLAA QIGV  ++ V D 
Sbjct: 40  RPITVVGNPVLHRECKDVTEFGEDLARLIDDMFASQKAAEGVGLAANQIGVDAKVFVYDC 99

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D    ++  V INPK++       V     EGCLS+P   A + R  +  V   D    
Sbjct: 100 PDDDGVRHTGVVINPKLVELPAASRVLDDSNEGCLSVPTAYAALARPDYAEVEGRDAQGN 159

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G  A CLQHE DHL G L+ID LS+  R    ++M +
Sbjct: 160 PIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 203


>gi|187932490|ref|YP_001886374.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
 gi|187720643|gb|ACD21864.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
          Length = 149

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + ++ DPILR+ S+ +E ++  I +++++M E MY+T+ G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLYDDPILRKKSKEVEVVDDKIRDILNDMAETMYNTENGAGLAAPQVGMLKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  INPKII       V  EGCLS P+    +KR   + +  ++ N 
Sbjct: 61  VIDMW-----QGLIKLINPKIIKKEGSQEVI-EGCLSNPNVFGKLKRPYKVIIEALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +   +   G LA C  HE+DHL+GILF D ++ 
Sbjct: 115 EEIQLTGTGDLAKCFCHEIDHLDGILFTDLVTE 147


>gi|254461985|ref|ZP_05075401.1| polypeptide deformylase [Rhodobacterales bacterium HTCC2083]
 gi|206678574|gb|EDZ43061.1| polypeptide deformylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 163

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR  +  + +I  ++  +  ++++ M +  G+G+ A QIGV+ RL V+D  +   
Sbjct: 9   WPDKRLRSKAADVSEITDEVCAVWTDLIDTMEAMPGVGMGANQIGVMLRLAVLDASNE-- 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD- 127
           R   +   NP+I+  S +   + E   ++P   A +KR   +TV++M  N +  I   D 
Sbjct: 67  RGKVIRMANPEILHASAELREHDEASPNLPGVSAVIKRPRAVTVKFM--NDKGIIDRRDF 124

Query: 128 -GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            GL AT +QH++DHLNG L+ DHLSR+KR M+ KK  KL
Sbjct: 125 VGLWATSVQHQIDHLNGKLYFDHLSRVKRTMLIKKAQKL 163


>gi|329942666|ref|ZP_08291445.1| peptide deformylase [Chlamydophila psittaci Cal10]
 gi|332287261|ref|YP_004422162.1| peptide deformylase [Chlamydophila psittaci 6BC]
 gi|313847847|emb|CBY16841.1| peptide deformylase [Chlamydophila psittaci RD1]
 gi|325507284|gb|ADZ18922.1| peptide deformylase [Chlamydophila psittaci 6BC]
 gi|328814926|gb|EGF84915.1| peptide deformylase [Chlamydophila psittaci Cal10]
 gi|328914507|gb|AEB55340.1| peptide deformylase [Chlamydophila psittaci 6BC]
          Length = 184

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 6/157 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + L  +  P LRR +  I  I  +I  L  +M E M +  G+GLAA Q+G   RL V+ +
Sbjct: 3   RELEYYGSPTLRREADAILDITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVRLFVMCV 62

Query: 64  QDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +      +      P V+INP +   S+D  + +EGCLSIP  RADV R   ITV+ ++ 
Sbjct: 63  EGETEDGDLIFCDFPKVYINPVLSDVSEDLVLGREGCLSIPGLRADVYRPRSITVKAINL 122

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           + Q    + +G  A  + HE DHLNG+L+ID +   K
Sbjct: 123 DGQEFTEHLEGFPARIIMHENDHLNGVLYIDKMEEPK 159


>gi|326202810|ref|ZP_08192677.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
 gi|325986887|gb|EGD47716.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
          Length = 151

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 83/143 (58%), Gaps = 7/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D +LR+  RP+E++N  I +L+ +M + MY T +G GLAA Q+G+L R +VID+ D    
Sbjct: 11  DEVLRKKCRPVEEVNDKIRDLLKDMADTMYDTGNGAGLAAPQVGILKRAIVIDMGDGL-- 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +  +NP+II       V  EGCLSIP     V R   + V+ ++   +  +I     
Sbjct: 69  ---INLVNPEIIEQKGSQEVI-EGCLSIPGKWGKVIRPYEVRVKALNEKGEEVVIKGKKE 124

Query: 130 LATCLQHELDHLNGILFIDHLSR 152
           +A CL HE+DHL+GILF D ++ 
Sbjct: 125 MAKCLCHEIDHLDGILFTDKVTE 147


>gi|227517269|ref|ZP_03947318.1| peptide deformylase [Enterococcus faecalis TX0104]
 gi|229548020|ref|ZP_04436745.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|307270561|ref|ZP_07551859.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|307284851|ref|ZP_07565007.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|312902126|ref|ZP_07761386.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|312905430|ref|ZP_07764544.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|312906688|ref|ZP_07765688.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|227075276|gb|EEI13239.1| peptide deformylase [Enterococcus faecalis TX0104]
 gi|229306896|gb|EEN72892.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|306503110|gb|EFM72367.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|306513142|gb|EFM81776.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|310627336|gb|EFQ10619.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|310631159|gb|EFQ14442.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|311290790|gb|EFQ69346.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|315026429|gb|EFT38361.1| peptide deformylase [Enterococcus faecalis TX2137]
 gi|315146582|gb|EFT90598.1| peptide deformylase [Enterococcus faecalis TX4244]
 gi|315161200|gb|EFU05217.1| peptide deformylase [Enterococcus faecalis TX0645]
 gi|315171198|gb|EFU15215.1| peptide deformylase [Enterococcus faecalis TX1342]
 gi|315577116|gb|EFU89307.1| peptide deformylase [Enterococcus faecalis TX0630]
 gi|315581154|gb|EFU93345.1| peptide deformylase [Enterococcus faecalis TX0309A]
          Length = 150

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 4/133 (3%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI++ + + R      IN
Sbjct: 3   AQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGR---FELIN 59

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
           P II      S+  EGCLSIP+    V+R+  +TVRY D   +   + A G LA   QHE
Sbjct: 60  PVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQHE 118

Query: 138 LDHLNGILFIDHL 150
           +DHLNG LFID +
Sbjct: 119 IDHLNGELFIDKM 131


>gi|320103814|ref|YP_004179405.1| peptide deformylase [Isosphaera pallida ATCC 43644]
 gi|319751096|gb|ADV62856.1| peptide deformylase [Isosphaera pallida ATCC 43644]
          Length = 200

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 2/161 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P P LR  S P+ + + ++   I  M  +MY  +GIGLAA Q+ + Y+  ++++  
Sbjct: 3   IVPYPHPALRYPSVPVTRFDDELRGQIQAMFALMYENEGIGLAANQVALPYQFFILNISG 62

Query: 66  HAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +  +     VFINP+I+      +  +EGCLS P     V R   I VR  D       +
Sbjct: 63  NPEQTELEQVFINPQILR-KQATAQDEEGCLSFPGLHGKVLRPRRIKVRAWDQYGVPFEL 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            AD LLA  +QHE DHL+G LFID  S L R   +KK+   
Sbjct: 122 EADELLARAIQHEWDHLHGRLFIDKFSTLGRINASKKLKAF 162


>gi|84060919|ref|YP_444131.1| hypothetical protein O2ColV76 [Escherichia coli]
 gi|3288155|emb|CAA11508.1| hypothetical protein [Escherichia coli]
 gi|76781994|gb|AAX22071.2| conserved hypothetical protein [Escherichia coli]
          Length = 149

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 86/126 (68%), Gaps = 4/126 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ + IGLAA Q+ +  R++VID+ ++  
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYA-ESIGLAATQVDIHQRIIVIDVSEN-- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADG
Sbjct: 66  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADG 124

Query: 129 LLATCL 134
           LLA C+
Sbjct: 125 LLAICI 130


>gi|320104581|ref|YP_004180172.1| peptide deformylase [Isosphaera pallida ATCC 43644]
 gi|319751863|gb|ADV63623.1| peptide deformylase [Isosphaera pallida ATCC 43644]
          Length = 230

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 8/155 (5%)

Query: 3   KKPLVIFPDPILRRVSRPIE--KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           ++P++    P LR+ +R +E  ++ +D    LI +M + +    G+GLA  QIGV  R++
Sbjct: 19  RRPILWLGHPALRQTARVVEPSQLKTDAFRRLIGDMAQTLEDEGGVGLAGPQIGVDQRVI 78

Query: 60  VIDL----QDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +       +D +   +P+  FINP I+  S       EGCLSIP   A V R   + + Y
Sbjct: 79  LAGAFPSERDPSRPNHPVRAFINPVIVARSSQVGAAYEGCLSIPGILARVVRPHAVEIEY 138

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +D NA  + + A+G LA  LQHE+DHL+G+L +DH
Sbjct: 139 LDLNAMPRRLRAEGFLARVLQHEIDHLDGVLIVDH 173


>gi|325195568|emb|CCA28422.1| peptide deformylase putative [Albugo laibachii Nc14]
          Length = 98

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 66/96 (68%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           MVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +   + A+GLLA 
Sbjct: 1   MVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAI 60

Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 61  CIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 96


>gi|225021362|ref|ZP_03710554.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945744|gb|EEG26953.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 169

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 1/155 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + IF DP+L   +  I   +  + +L+++M + M +  G+GLAA QIGVL R+ V
Sbjct: 1   MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMFDTMDAAGGVGLAANQIGVLRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D           + INP+     ++  +  EGCLSIP+  AD +R   + V   D +  
Sbjct: 61  FDCTTEEDGMRGHI-INPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              I A GL+A C+QHE DHL+G+LF+  L+  +R
Sbjct: 120 PLTITASGLMARCIQHETDHLDGVLFLRRLTPERR 154


>gi|160939813|ref|ZP_02087160.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437247|gb|EDP15012.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC
           BAA-613]
          Length = 161

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL +  +P++ +N   M LI++M E MY  +G GLAA Q+GVL ++V 
Sbjct: 1   MAVRQIRIMGDEILTKKCKPVKAMNDRTMELIEDMFETMYQANGCGLAAPQVGVLKQIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     N  V INP+ IT +D      EGCLS+P     V R  ++ V+ ++ N +
Sbjct: 61  IDVDD----GNQYVLINPE-ITATDGSQTGYEGCLSLPGKSGIVTRPNYVKVKALNENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA  + HE  HL G ++++
Sbjct: 116 PYELEGEGLLARAICHECAHLEGQMYVE 143


>gi|320451483|ref|YP_004203579.1| peptide deformylase [Thermus scotoductus SA-01]
 gi|320151652|gb|ADW23030.1| peptide deformylase [Thermus scotoductus SA-01]
          Length = 191

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 13/168 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-VVIDL 63
           P+ ++ DP+LR+ +RP++     +  L ++MLE M+   G+GLAA QIG+  R  V ++ 
Sbjct: 4   PIRLYGDPVLRKKARPVQDFQG-LKKLAEDMLETMFEARGVGLAAPQIGLSQRFFVAVEY 62

Query: 64  QDHAH-RKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVR 113
            D     + P+        V  NP +IT  +      EGCLS+P  Y  +V R+  I V 
Sbjct: 63  ADEPEGEERPLRDLARRIYVVANP-VITHREGEVEGLEGCLSLPGLYAEEVPRAERIRVE 121

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           Y D   + + +  +G +A   QHE+DHL+GILF + L + KR+   ++
Sbjct: 122 YQDEEGRPRALELEGYMARVFQHEIDHLDGILFFERLPKAKREAFLEE 169


>gi|172040657|ref|YP_001800371.1| peptide deformylase [Corynebacterium urealyticum DSM 7109]
 gi|171851961|emb|CAQ04937.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109]
          Length = 166

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 83/147 (56%), Gaps = 10/147 (6%)

Query: 9   FPDPILRRVSRPIEK-INSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64
           F DP+LR  +  +E   +SD  +  L+ +MLE M    G+GLAA Q+GV  R+ V D + 
Sbjct: 9   FGDPVLRTPAAEVEADFSSDAALATLVADMLETMDHHGGVGLAANQVGVTKRVFVYDCES 68

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D  H       INP   +  ++     EGCLSIP  R +V+R+  + +R    + +   +
Sbjct: 69  DRGH------VINPTWESVGEETQTGPEGCLSIPGIRGEVQRAETVRLRGQTLDGELVDM 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
              GLLA C+QHE DHL+G+LF+ HLS
Sbjct: 123 EVSGLLARCVQHETDHLDGVLFLKHLS 149


>gi|251780966|ref|ZP_04823886.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085281|gb|EES51171.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 149

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 85/139 (61%), Gaps = 7/139 (5%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DPILR+ S+ +E I+  I +++++M E MY+T+ G GLAA Q+G+L RLVVID+      
Sbjct: 11  DPILRKKSKEVEVIDDKIRDILNDMAETMYNTENGAGLAAPQVGILKRLVVIDMW----- 65

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           +  +  INPKII   +      EGCLS P+    +KR   + V+ ++ N +   +   G 
Sbjct: 66  QGLIKLINPKIIK-KEGIQEVIEGCLSSPNVFGKLKRPYKVIVQALNENGEEIELIGTGD 124

Query: 130 LATCLQHELDHLNGILFID 148
           LA C  HE+DHL+GILF D
Sbjct: 125 LAKCFCHEIDHLDGILFTD 143


>gi|225569235|ref|ZP_03778260.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM
           15053]
 gi|225162034|gb|EEG74653.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM
           15053]
          Length = 157

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    + +L +  +P++K+      LI++M + MY   G+GLAA Q+GVL R+V 
Sbjct: 1   MATRKIRELGEEVLTKTCKPVDKLTLRTKVLINDMFDTMYEAYGVGLAAPQVGVLKRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+II  S +    +EGCLS+P     V R  ++ VR +D + Q
Sbjct: 61  IDVGE-----GPIVLINPEIIETSGE-QTGEEGCLSVPGKYGIVTRPDYVRVRALDEDMQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + +   GLLA    HE+DHL+G ++++
Sbjct: 115 ERELEGTGLLARAFCHEIDHLDGNMYVE 142


>gi|15807421|ref|NP_296154.1| peptide deformylase [Deinococcus radiodurans R1]
 gi|23396556|sp|Q9RRQ4|DEF_DEIRA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|6460249|gb|AAF11975.1|AE002073_5 polypeptide deformylase [Deinococcus radiodurans R1]
          Length = 232

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 92/171 (53%), Gaps = 26/171 (15%)

Query: 5   PLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           P+ ++ DPILRR +R +   ++          +  + D MLE M+   G+GLAA QIG+ 
Sbjct: 23  PMRLYGDPILRRKARNLTAADTLHVPGFEPQTVREVADTMLETMFEERGVGLAAPQIGLP 82

Query: 56  YRLVVI-----DLQDHAHRKNPM--------VFINP--KIITFSDDFSVYQEGCLSIPD- 99
            R+ V      D +++  ++ P+        V +NP  K+I    D S YQEGCLSIP  
Sbjct: 83  VRMFVAVEYADDEEENEGQETPLRSRVLREYVMLNPVVKVINKKKDKS-YQEGCLSIPGI 141

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Y   V R+  + V Y D + Q + I A+  LA   QHE DHL+G LF+DHL
Sbjct: 142 YEDGVPRARQVRVDYTDLDGQPRSIEAEDYLARVFQHETDHLDGKLFLDHL 192


>gi|225418638|ref|ZP_03761827.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme
           DSM 15981]
 gi|225041834|gb|EEG52080.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme
           DSM 15981]
          Length = 165

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 5/138 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D ILR+  +P++++      LI++M E MY  +G+GLAA Q+G+L +LVVID+ D     
Sbjct: 13  DEILRKQCKPVKEMTPRTAELIEDMFETMYEANGVGLAAPQVGILRQLVVIDVDD----G 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           N  V INP+I+  ++      EGCLS+P     V R   + V+ ++   +   +  DGLL
Sbjct: 69  NQYVLINPEILE-TEGSQTGSEGCLSVPGKSGTVTRPMHVKVKALNEKLEPYELEGDGLL 127

Query: 131 ATCLQHELDHLNGILFID 148
           A  + HE+ HL G L++D
Sbjct: 128 ARAICHEIAHLRGELYVD 145


>gi|153939969|ref|YP_001391592.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|152935865|gb|ABS41363.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|295319620|gb|ADF99997.1| peptide deformylase [Clostridium botulinum F str. 230613]
          Length = 150

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + +  D ILR+ S+ +E ++  I  ++++M + MY+T+ G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLVDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|328955668|ref|YP_004373001.1| peptide deformylase [Coriobacterium glomerans PW2]
 gi|328455992|gb|AEB07186.1| peptide deformylase [Coriobacterium glomerans PW2]
          Length = 185

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 82/148 (55%), Gaps = 4/148 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V+ PD  LRR   PIE+I  +I  L  +M + M+   G GLAA Q+G   +++VID   
Sbjct: 6   IVLSPDERLRRECAPIEEITPEIERLASHMKQEMFENAGCGLAAPQVGQTVQMIVIDTS- 64

Query: 66  HAHRK--NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +  R+  +P V INP II  SD  + + EGCLSIP    ++ R   + V   D +A    
Sbjct: 65  YTSREDYDPYVLINPVIIEQSDRLTAFSEGCLSIPGISCEIYRPDHVVVEAYDLDANLIR 124

Query: 124 IYADG-LLATCLQHELDHLNGILFIDHL 150
             A G L+  CLQHE+DHL GI   + L
Sbjct: 125 YEAAGDLMCVCLQHEIDHLKGITMFERL 152


>gi|229815473|ref|ZP_04445805.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM
           13280]
 gi|229809006|gb|EEP44776.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM
           13280]
          Length = 178

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 84/152 (55%), Gaps = 2/152 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V+ PDP LR+    +E+INSD+  L++ M   M+   G GLAA Q+G   +L ++D + 
Sbjct: 6   IVLSPDPRLRQECAEVEEINSDLRALVERMKVQMFENGGCGLAAPQVGETIQLAIVDTEY 65

Query: 66  HAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + +  +P V INP I+  SD+   Y EGCLSIP    +++R   + V   +   +    
Sbjct: 66  TSEKDYDPYVLINPVIVEQSDNLVPYNEGCLSIPGINCEIRRPDHVVVEAYNLEGECIRY 125

Query: 125 YADG-LLATCLQHELDHLNGILFIDHLSRLKR 155
            A G L   CLQHE+DHL+G    + L   +R
Sbjct: 126 EAAGDLFCVCLQHEIDHLHGKTMFERLLPQQR 157


>gi|139436889|ref|ZP_01771049.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC
           25986]
 gi|133776536|gb|EBA40356.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC
           25986]
          Length = 180

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 86/158 (54%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ PDP LR+    IE+I   I  L + M ++M+   G GLAA QIG L +LV 
Sbjct: 3   MEANGIVLSPDPRLRQECAVIEEITPAIEALAEKMKKIMFENGGCGLAAPQIGELIQLVT 62

Query: 61  IDLQDHAHRK--NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID  D++ +   +P V INP I+  SD    + EGCLSIP    +++R   + V   D +
Sbjct: 63  IDC-DYSDKNDYDPYVLINPVIVEQSDHLVPFSEGCLSIPGISCEIERPDHVVVEAYDLD 121

Query: 119 AQHQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKR 155
           A      A G L   CLQHE+DHL+G    + L  ++R
Sbjct: 122 ANLIRYEATGDLFCVCLQHEIDHLHGNTMFERLKPMQR 159


>gi|239982203|ref|ZP_04704727.1| polypeptide deformylase [Streptomyces albus J1074]
 gi|291454049|ref|ZP_06593439.1| polypeptide deformylase [Streptomyces albus J1074]
 gi|291356998|gb|EFE83900.1| polypeptide deformylase [Streptomyces albus J1074]
          Length = 218

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 3/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ +  +P+L R ++ +   ++++  L+D+M     + +G+GLAA QIGV  ++ V D 
Sbjct: 44  RPITVVGNPVLHRETKDVTVFDAELAQLVDDMFASQRAAEGVGLAANQIGVDKKVFVYDC 103

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D    ++  V  NP +     +  V     EGCLS+P   A++ R  +  VR  D    
Sbjct: 104 PDDEGARHVGVVCNPVLDELPSERRVLDDSNEGCLSVPTAYAELARPDYAVVRGQDEKGN 163

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 164 PIVVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 207


>gi|153815688|ref|ZP_01968356.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756]
 gi|317501925|ref|ZP_07960109.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088261|ref|ZP_08337180.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846929|gb|EDK23847.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756]
 gi|316896605|gb|EFV18692.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408505|gb|EGG87971.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 166

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D IL +  + + K+      LI +MLE MY ++G+GLAA Q+GVL R+VVID+ +     
Sbjct: 11  DDILEKQCKAVPKMTLRTKILIGDMLETMYESNGVGLAAPQVGVLKRIVVIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+II  S +    +EGCLS+P     V R   + VR  D N     +  +GLL
Sbjct: 66  GPIVLINPQIIESSGE-QTGEEGCLSVPGKFGIVTRPDRVKVRAFDENMNEFEMEGEGLL 124

Query: 131 ATCLQHELDHLNGILFID 148
           A    HELDHL+G L+++
Sbjct: 125 ARAFCHELDHLDGKLYVE 142


>gi|332799422|ref|YP_004460921.1| peptide deformylase [Tepidanaerobacter sp. Re1]
 gi|332697157|gb|AEE91614.1| Peptide deformylase [Tepidanaerobacter sp. Re1]
          Length = 154

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 6/140 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+ SR +   +  +  LI +MLE M + +G+GLAA Q+G+L R+VVID+ +   
Sbjct: 9   YGDEVLRKKSRNVTVFDKRLHTLILDMLETMMNANGVGLAAPQVGILKRVVVIDVGE--- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+V +NP+I+    +  +  EGCLSIP    +V R + + V+  D   ++  I  + 
Sbjct: 66  --GPIVLVNPEIVESKGEV-IEPEGCLSIPGILGEVPRPSRVKVKAQDKWGKYIEIEGED 122

Query: 129 LLATCLQHELDHLNGILFID 148
           LLA  L HE+DHL G LF+D
Sbjct: 123 LLARALCHEIDHLEGKLFVD 142


>gi|124485018|ref|YP_001029634.1| peptide deformylase [Methanocorpusculum labreanum Z]
 gi|124362559|gb|ABN06367.1| peptide deformylase [Methanocorpusculum labreanum Z]
          Length = 162

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 9/160 (5%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           I+   +L +V+ P++ I  +++ ++D M+ ++    G+GLAA Q+G+  R  V++  D  
Sbjct: 5   IYGKTVLAQVAEPVDTITPELLAILDEMVPMLKEHRGVGLAAPQVGIGKRFFVMNPGDKV 64

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R      INP+I+   + FS  +EGCLS+P     V+R   ITVRY   N   ++I  +
Sbjct: 65  RR-----VINPEIMKTGNAFSEMEEGCLSVPGIHKKVRRPRRITVRY--TNEAGELIEEE 117

Query: 128 --GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                A    HE DHL+GILF+D +S + + MI K++  L
Sbjct: 118 LKDYPARVFLHEYDHLDGILFVDRISPIAKKMIAKQLEDL 157


>gi|300790374|ref|YP_003770665.1| polypeptide deformylase [Amycolatopsis mediterranei U32]
 gi|299799888|gb|ADJ50263.1| putative polypeptide deformylase [Amycolatopsis mediterranei U32]
          Length = 192

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 16/174 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI  +P+L + +R I + +  +  L+D+M E MY+ +G+GLAA QIG+  R+ V
Sbjct: 1   MTIHPIVIAGEPVLHQPTREITEFDEKLRTLVDDMFETMYAAEGVGLAANQIGLDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS---------DDFSVYQEGCLSIPDYRADVKRSAFIT 111
            D  D    ++  V +NPK+ T           DD+    EGCLS P       R+ +  
Sbjct: 61  YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDDDW----EGCLSAPGESYPTGRAKWAK 116

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
           V   D +     +   G  A CLQHE DHL+G +++D L  R  R    KKM K
Sbjct: 117 VTGSDIDGHPIEVEGTGYFARCLQHETDHLDGYIYLDRLVGRHAR--AAKKMLK 168


>gi|227833011|ref|YP_002834718.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182501|ref|ZP_06041922.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454027|gb|ACP32780.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 169

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 1/151 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + ++ DP+L   +  I +    +  L  +MLE M    G+GLAA QIGV  R+ V
Sbjct: 1   MTVREVRLYGDPVLTTRAEEITEFGPSLERLAQDMLETMEDAGGVGLAANQIGVTKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D     H     V INP+     ++  +  EGCLSIP      +R + + +R  D   +
Sbjct: 61  FDCSHFQHGLRGAV-INPEWEAVGEEMQLGTEGCLSIPGISQPTERFSTVRLRGYDPQGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + A GL+A C+QHE DHL+G+LF+  LS
Sbjct: 120 PVSMLASGLMARCIQHETDHLDGVLFLQRLS 150


>gi|154249636|ref|YP_001410461.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1]
 gi|154153572|gb|ABS60804.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1]
          Length = 170

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 6/160 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           I  DP+LR+ ++P+    + +  +I+     MY  DG+GLAA Q+G+  R   +D  D +
Sbjct: 5   ILGDPVLRKKAQPVTDF-AQVRAIIEEFKLTMYEQDGVGLAAPQVGISLRFFGMD--DGS 61

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
             K   + +NP+II  S++  + +EGCLS+P   ADV R  +I VRY D +  +     +
Sbjct: 62  GFK---MIVNPEIIEKSEEKELGEEGCLSVPGVFADVLRHKWIRVRYQDEHGTYHEELLE 118

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           G  A   QHE DHL+G+LFIDHL    R  + +++ K+++
Sbjct: 119 GYPARIFQHEYDHLDGVLFIDHLDSKTRTALAQQLKKIME 158


>gi|212639617|ref|YP_002316137.1| peptide deformylase [Anoxybacillus flavithermus WK1]
 gi|212561097|gb|ACJ34152.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1]
          Length = 151

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 83/144 (57%), Gaps = 4/144 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P PIL  V +P+   +  ++ L+++M + M + DG+GLAA QIGV  ++ ++D+ D   
Sbjct: 3   YPAPILETVCQPVTVFDRKLIKLLNDMYDTMLAADGVGLAAPQIGVDQQIAIVDIGD--- 59

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +  INP II   +   +  EGCLS P    +VKR  ++ VR  +   +   I A G
Sbjct: 60  RHGRIELINP-IIVAQNGEQIGPEGCLSFPGLFGEVKRFQYVKVRAQNRRGRPFEIEATG 118

Query: 129 LLATCLQHELDHLNGILFIDHLSR 152
            LA  LQHE+DHL+GILF   + R
Sbjct: 119 FLARALQHEIDHLHGILFTSKVIR 142


>gi|262091759|gb|ACY25348.1| peptide deformylase [uncultured actinobacterium]
          Length = 180

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 6/157 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + DP+L  ++  I  I+  ++ L ++M  VMY   G+GLA  QIGV  ++ V D+ D   
Sbjct: 15  YGDPVLAAMADEITNIDGKLVTLAEDMFRVMYQAPGLGLAGPQIGVQKQIFVYDVDD--- 71

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
             +P V INPKI+  S ++ VY EGCLSIP    ++ R   + V           I AD 
Sbjct: 72  --DPQVIINPKIVESSGEW-VYDEGCLSIPGLYVEMLRPKKVLVSGFTLEGDEVQIEADE 128

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           LLA   QHE+DHL G+L  D +   +R++   + +K+
Sbjct: 129 LLARLFQHEIDHLQGVLMFDRMLPDQRELAIVEYAKV 165


>gi|61679585|pdb|1Y6H|A Chain A, Crystal Structure Of Lipdf
 gi|61679586|pdb|1Y6H|B Chain B, Crystal Structure Of Lipdf
 gi|75765202|pdb|1SV2|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.5
 gi|75765203|pdb|1SV2|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.5
 gi|75765298|pdb|1VEV|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph6.5
 gi|75765299|pdb|1VEV|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph6.5
 gi|75765300|pdb|1VEY|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.0
 gi|75765301|pdb|1VEY|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.0
 gi|75765302|pdb|1VEZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans(Lipdf) At Ph8.0
 gi|75765303|pdb|1VEZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans(Lipdf) At Ph8.0
          Length = 177

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 8/152 (5%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DPILR++S P+   E    +   LI +M + M   +G+GLAA QIG+L ++VV+  +D+ 
Sbjct: 10  DPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNE 69

Query: 68  HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                      + +NP I   + D S + EGCLS+P  R  V+R   I +++MD      
Sbjct: 70  RYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQF 129

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
               DG  A   QHE DHL GIL++D L   K
Sbjct: 130 DETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161


>gi|24215138|ref|NP_712619.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45657385|ref|YP_001471.1| peptide deformylase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|23396549|sp|Q93LE9|DEF_LEPIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|59797588|sp|Q72S74|DEF_LEPIC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|14626937|gb|AAK70806.1| peptide deformylase [Leptospira interrogans]
 gi|24196204|gb|AAN49637.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45600624|gb|AAS70108.1| putative polypeptide deformylase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 178

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 8/152 (5%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DPILR++S P+   E    +   LI +M + M   +G+GLAA QIG+L ++VV+  +D+ 
Sbjct: 11  DPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNE 70

Query: 68  HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                      + +NP I   + D S + EGCLS+P  R  V+R   I +++MD      
Sbjct: 71  RYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQF 130

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
               DG  A   QHE DHL GIL++D L   K
Sbjct: 131 DETIDGYKAIVYQHECDHLQGILYVDRLKDTK 162


>gi|326329902|ref|ZP_08196217.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
 gi|325952293|gb|EGD44318.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
          Length = 204

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 3/167 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+  +  P++ R  + +E  +  +  L  +M+  MY+ +G+GLAA QIG    + V D 
Sbjct: 25  RPITRWGTPVMHRPKKQVEVFDDALTELAADMVATMYAAEGVGLAADQIGEDVAIFVFDC 84

Query: 64  QDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   R+   V  NP +     D     V  EGCLS P    D  R  +  V  +  + Q
Sbjct: 85  PDATGRRTVGVVCNPVLTLPEGDDRHLDVDLEGCLSFPGAFVDCGRPDWAAVDGLGLDGQ 144

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                 +GLLA CLQHE DH NG +F D +S   R  +TK+  ++ Q
Sbjct: 145 PVHFEGNGLLARCLQHETDHTNGTVFGDRISAKARKKLTKEHDRVAQ 191


>gi|239944168|ref|ZP_04696105.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           15998]
 gi|239990624|ref|ZP_04711288.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           11379]
 gi|291447640|ref|ZP_06587030.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291350587|gb|EFE77491.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 212

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECKDVTAFDDELAQLIDDMFASQKTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D   +++  V  NP +   + +  V     EGCLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGKRHTGVVCNPVLEELAPEMRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAK 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M +
Sbjct: 156 GNPIRVKGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201


>gi|227504404|ref|ZP_03934453.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
 gi|227199052|gb|EEI79100.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
          Length = 162

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 1/148 (0%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           ++ DP+L   +  IEK +S +  L ++MLE M +  G+GLAA QIG+  R+ V D   H 
Sbjct: 1   MYGDPVLTSRATEIEKFDSSLEALANDMLETMDAAGGVGLAANQIGLTKRIFVYDCS-HF 59

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                   INP      D      EGCLSIPD   + +R   + V   D       + A 
Sbjct: 60  QTGLRGAIINPVWTPLGDKTQDGPEGCLSIPDITENTERYESVVVHGRDVRGNAISMVAS 119

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKR 155
           GL+A C+QHE DHL+G+LF+  L+  +R
Sbjct: 120 GLMARCIQHETDHLDGVLFLQRLTPERR 147


>gi|237750767|ref|ZP_04581247.1| polypeptide deformylase [Helicobacter bilis ATCC 43879]
 gi|229373857|gb|EEO24248.1| polypeptide deformylase [Helicobacter bilis ATCC 43879]
          Length = 171

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 91/149 (61%), Gaps = 5/149 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---QD 65
           +P+ ILR +S+ ++  ++ +   +D+M E M   +G+GLAA+Q+    R+++I++   +D
Sbjct: 8   YPNKILRTISKEVQVFDNALHEFLDSMYETMMEHNGVGLAAIQVAKPLRVLIINIPREED 67

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD-CNAQHQII 124
           +   K  ++ I   +I  ++   ++ EGCLS+P +  +V R + I V+Y D     H+ I
Sbjct: 68  NTQYKEDLLEIINPVILHAEGEILWNEGCLSVPGFYEEVSRFSQIKVKYQDRFGVTHENI 127

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153
           + D  +A  LQHE+DHLNGILF+D L  L
Sbjct: 128 FND-FMAVALQHEMDHLNGILFVDKLPLL 155


>gi|256374580|ref|YP_003098240.1| peptide deformylase [Actinosynnema mirum DSM 43827]
 gi|255918883|gb|ACU34394.1| peptide deformylase [Actinosynnema mirum DSM 43827]
          Length = 195

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 88/174 (50%), Gaps = 16/174 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +RP+++ + ++  LI +M E M + +G+GLAA QIGV  RL V
Sbjct: 1   MAVHPIRIAGDPVLHNPTRPVDEHDDELRALIADMYETMAAANGVGLAANQIGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF---------SDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            D  D    +     +NP + T           DD+    EGCLS P       R+++  
Sbjct: 61  YDCPDDEGVRRRGEVVNPVLQTSDVPLGMPDPDDDY----EGCLSAPGESYPTGRASWAK 116

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
           V   D N     +   G  A CLQHE DHL+G L++D L  R KR   +KKM K
Sbjct: 117 VTGTDGNGDPVEVEGTGFFARCLQHETDHLDGYLYLDRLVGRHKR--ASKKMIK 168


>gi|297202274|ref|ZP_06919671.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
 gi|197710208|gb|EDY54242.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
          Length = 216

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + +   ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTEFGEELDQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D QD   R++  V  NPK++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCQDDEGRRHVGVVCNPKLVDLPADRRQLDESNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|239626559|ref|ZP_04669590.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516705|gb|EEQ56571.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 162

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL +  +P++++    M LI++M E MY  +G GLAA Q+GVL ++V 
Sbjct: 1   MAVRQIRIMGDDILTKKCKPVKEMTRRTMELIEDMFETMYEANGCGLAAPQVGVLKQIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     N  V INP+II      + Y EGCLS+P     V R  ++ V+ +D N +
Sbjct: 61  IDVDDG----NQYVLINPEIIAQDGSQTGY-EGCLSLPGKSGIVTRPNYVKVKALDENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA  + HE+ HL G ++++
Sbjct: 116 PFELEGEGLLARAICHEVAHLEGQMYVE 143


>gi|190891919|ref|YP_001978461.1| peptide deformylase [Rhizobium etli CIAT 652]
 gi|190697198|gb|ACE91283.1| peptide deformylase protein [Rhizobium etli CIAT 652]
          Length = 164

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   ++ +  L D++L  M +  G+G+ A  IGV  R++V
Sbjct: 1   MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L D A      +++NP I   S +  ++ EG +S+P    DV R   I  RY D + +
Sbjct: 61  LEL-DRA--DGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161


>gi|331697237|ref|YP_004333476.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190]
 gi|326951926|gb|AEA25623.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190]
          Length = 182

 Score =  101 bits (251), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 10/163 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   ++++  L+ ++ + M+   G GLAA QIGV  R+  
Sbjct: 1   MSVQPVRLFGDPVLRTPAVEVTTFDAELRKLVADLTDTMHDEGGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+   A        +NP      D+     EGCLSIP  R D  R   +  R  + + +
Sbjct: 61  YDVDGFAGH-----LVNPTFDVVGDEEQTGPEGCLSIPGLRWDCTRHLHVVARGWNVHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +    LLA C+QHE DHL+G+LF+D L     D  T+K++
Sbjct: 116 PVTVEGSELLARCIQHETDHLDGVLFVDRL-----DAETRKLA 153


>gi|327194673|gb|EGE61521.1| peptide deformylase protein [Rhizobium etli CNPAF512]
          Length = 164

 Score =  101 bits (251), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   ++ +  L D++L  M +  G+G+ A  IGV  R++V
Sbjct: 1   MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L          +++NP I   S +  ++ EG +S+P    DV R   I  RY D + +
Sbjct: 61  LEL---GRADGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161


>gi|84500578|ref|ZP_00998827.1| peptide deformylase [Oceanicola batsensis HTCC2597]
 gi|84391531|gb|EAQ03863.1| peptide deformylase [Oceanicola batsensis HTCC2597]
          Length = 165

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 93/166 (56%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +PD  LR  +  +  +   +     +M++ M +  G+GLAAVQIGV+ RL V
Sbjct: 1   MAVRPILRWPDRRLRAAAADVVDVTDAVRATWADMIDTMEAMPGVGLAAVQIGVMQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+++  S +   ++E    +P   A + R   +TVR++  NA+
Sbjct: 61  VDAS--GERGQAVRMANPEVLHASVEPRDHEEASPCLPGVSARITRPRAVTVRFL--NAE 116

Query: 121 HQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +   D  GL AT +QH++DHL G ++ D LS++KRDM+ ++  K
Sbjct: 117 GAVEERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARK 162


>gi|302037138|ref|YP_003797460.1| peptide deformylase [Candidatus Nitrospira defluvii]
 gi|300605202|emb|CBK41535.1| Peptide deformylase [Candidatus Nitrospira defluvii]
          Length = 176

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 78/144 (54%), Gaps = 4/144 (2%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +PILR+ + P+   E   +    LID+M E MY   GIGLAA Q+G   +LVV+D     
Sbjct: 11  NPILRQKAVPLTPAEIKKASFQQLIDDMFETMYDEPGIGLAAPQVGRSQQLVVMDCPGEG 70

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                 V INP I  +  +     EGCLS+   R  V R + + V  +D NA+     A 
Sbjct: 71  GFPK-TVLINPTIQFYGPEQVEGWEGCLSVDGLRGKVTRPSTVRVTGLDRNAKPFDFEAS 129

Query: 128 GLLATCLQHELDHLNGILFIDHLS 151
           GL A C+QHELDHL G LFID ++
Sbjct: 130 GLYAVCIQHELDHLIGKLFIDRMT 153


>gi|261367360|ref|ZP_05980243.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
 gi|282570120|gb|EFB75655.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
          Length = 171

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-V 59
           M  + +V   DPIL++V RP+ K +  +  L+D+M E + + +G+GLA  Q+G++ RL +
Sbjct: 1   MALRTIVQDGDPILKKVCRPVTKFDDRLRILLDDMKETLLAANGLGLAGPQVGMMRRLFI 60

Query: 60  VIDLQD------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            +D +D        +    + FINP+I+  SD+     EGCLS P +   + RS  + V+
Sbjct: 61  CLDERDMPEEVPENYEYKFIEFINPEILELSDEKVELYEGCLSFPGHNGAISRSKHVKVK 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             D + +   + AD +LA C+QHE +HL+GI  +D  +    D
Sbjct: 121 AQDRHGEWFEMEADDMLARCIQHENNHLDGITIMDLATHFYED 163


>gi|328880868|emb|CCA54107.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712]
          Length = 187

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 80/161 (49%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + + +  DP+L     P+     ++  L+++M   MY+ +G+GLAA Q+GV  R+ V D 
Sbjct: 14  RAMTLLGDPVLHAPCAPVTDFGPELARLVEDMFATMYAANGVGLAANQVGVGLRVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP+++    D     EGCLS+P   A   R     V  +  +     
Sbjct: 74  PDDEETRHLGHVVNPRLVAADGDVVRGPEGCLSLPGLEAPTPRYDRAVVEGVRLDGTPVR 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   G  A CLQHE DHL G ++ DH++  +R  + + + K
Sbjct: 134 VEGTGFFARCLQHETDHLEGGVYADHVTGWRRSRLLRAIRK 174


>gi|254485851|ref|ZP_05099056.1| peptide deformylase [Roseobacter sp. GAI101]
 gi|214042720|gb|EEB83358.1| peptide deformylase [Roseobacter sp. GAI101]
          Length = 165

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +P+  LR  +  + +I  DI  L D+M+  M +  G+GLAA QIGV+ ++ V
Sbjct: 1   MTVRKIVPWPNTCLRTAAAEVPEITDDIRALWDDMIATMDAMPGVGLAAPQIGVMLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     +++  +   NP I+  S   + + E   ++P   A VKR   +TVRY+D    
Sbjct: 61  VDASQARNKR--IRLANPVILDASAILNEHDEASPNLPGVSAKVKRPRGVTVRYLDETGV 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  GL AT +QH++DHL G ++ D+LS+ +RDM+ +K  K 
Sbjct: 119 VTRRDFVGLEATSVQHQIDHLAGKMYFDNLSKTRRDMLLRKARKF 163


>gi|60117243|gb|AAX14403.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila
           mojavensis]
          Length = 134

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 8/130 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V+D+Q
Sbjct: 5   PIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFVVDVQ 64

Query: 65  DHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                  P  +        INP+I   SD+  + +EGCLSIP+   ++KR  ++TV+Y D
Sbjct: 65  LETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTVKYKD 124

Query: 117 CNAQHQIIYA 126
            + + Q + A
Sbjct: 125 LDNEEQTLKA 134


>gi|311898295|dbj|BAJ30703.1| putative polypeptide deformylase [Kitasatospora setae KM-6054]
          Length = 218

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R  R +   + ++  LID+M + MY+ +G+GLAA QIGV  ++ V 
Sbjct: 42  TARPITVVGNPVLHREVRTVTAFDGELSALIDDMFQSMYAAEGVGLAANQIGVDLKVFVY 101

Query: 62  DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D  D        H  NP++   P      DD    QEGCLS+P    ++ R  +  V   
Sbjct: 102 DCPDDEGVRHVGHVVNPVLEELPAGRRALDD---SQEGCLSVPTAYQELARPDYAAVTGQ 158

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           D +     +   G  A CLQHE DHL G L+ID LS+  R    ++M+
Sbjct: 159 DKDGNPIRVEGTGFFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMA 206


>gi|302536804|ref|ZP_07289146.1| peptide deformylase [Streptomyces sp. C]
 gi|302445699|gb|EFL17515.1| peptide deformylase [Streptomyces sp. C]
          Length = 211

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R  + + +   ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 35  TSRPITVVGNPVLHRECKDVTEFGDELARLIDDMFASQKTAEGVGLAANQIGVDAKVFVY 94

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V +NPK++       V     EGCLS+P   A + R  +  V   D  
Sbjct: 95  DCPDDDGVRHTGVVVNPKLVELPAANRVLDDSNEGCLSVPTAYASLARPDYAEVTGQDAQ 154

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 155 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 200


>gi|325963040|ref|YP_004240946.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469127|gb|ADX72812.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 194

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 78/150 (52%), Gaps = 9/150 (6%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-H 66
           I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA Q+GV  R+    +    
Sbjct: 8   IIGDPVLRTVAEPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFTYRIDGVE 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            H       INP ++  SDDF   Q EGCLSIP     V+R     V  +D N     + 
Sbjct: 68  GH------IINP-VLENSDDFQQDQVEGCLSIPGLGFPVRRYRSTRVTGVDMNGNPVTVE 120

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +GLLA C QHE DHL+GIL+ D L    R
Sbjct: 121 GEGLLARCFQHENDHLDGILYTDRLEGEDR 150


>gi|294678912|ref|YP_003579527.1| peptide deformylase [Rhodobacter capsulatus SB 1003]
 gi|294477732|gb|ADE87120.1| peptide deformylase-1 [Rhodobacter capsulatus SB 1003]
          Length = 169

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 90/162 (55%), Gaps = 8/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58
           M  +P + F D  L   + P+E I  +I  +  +M++ M +    G+GLAA QIGV+ RL
Sbjct: 1   MAVRPFIRFDDKRLHTAAAPVEAITDEIRAIWADMVDTMEAMPGQGVGLAAPQIGVMLRL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            V+D  +   R   ++  NP+++  S     + E   ++P   A + R   +TVR++  N
Sbjct: 61  AVVDASEA--RGQAILMANPEVLHASGQMREHDEASPNLPGVWATISRPRAVTVRFL--N 116

Query: 119 AQHQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           A  +I   D   L AT +QH++DHLNG  ++DHLS LKR M+
Sbjct: 117 AAGEIEERDFVHLWATSVQHQIDHLNGKTYVDHLSMLKRKML 158


>gi|284045178|ref|YP_003395518.1| peptide deformylase [Conexibacter woesei DSM 14684]
 gi|283949399|gb|ADB52143.1| peptide deformylase [Conexibacter woesei DSM 14684]
          Length = 167

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           F DP+L+  +  + + + D+   I  M E+M    GIGLAA Q+G L R++V  ++  + 
Sbjct: 7   FGDPVLKSRAMTVSRFDDDLREQIRGMGEIMNDAFGIGLAATQLGKLNRVLVYRVEQDS- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +  +NP++    D+    +EGCLS+     DV+R   + VR  D      II A G
Sbjct: 66  --PAIALVNPELEWSGDELETAEEGCLSLRGVLVDVERPVHVRVRAQDEQGSTVIIEASG 123

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           L A  +QHE+DHL+G+L +D  SR +R    + + +
Sbjct: 124 LEARVIQHEMDHLDGVLILDRTSRDQRKQAMRALRE 159


>gi|301167996|emb|CBW27582.1| peptide deformylase [Bacteriovorax marinus SJ]
          Length = 179

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 9/162 (5%)

Query: 1   MVKKPLVIFPDPILRRVS--RPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  K L    +P+LR+V+   P E+I  +  + LI ++ + M    GIG+AA QIGV Y+
Sbjct: 1   MAIKDLTKMGNPVLRKVALEYPSEEIGGEKFIKLIKDLEDTMKENGGIGIAAPQIGVSYQ 60

Query: 58  LVVIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           + +I L D++ R       +  + +NP I         + EGCLS+P  R  V R   + 
Sbjct: 61  VAIIQLPDNSERYPDIAKSDQYIVVNPTIEVLDQTEQGFWEGCLSVPGLRGFVHRPRKVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           + +++  AQ + +  +G LAT  QHELDHL G L+ID +  L
Sbjct: 121 ITFLNDRAQQEELILEGFLATVFQHELDHLFGKLYIDRIKDL 162


>gi|294500984|ref|YP_003564684.1| peptide deformylase [Bacillus megaterium QM B1551]
 gi|294350921|gb|ADE71250.1| peptide deformylase [Bacillus megaterium QM B1551]
          Length = 157

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  LV  P+ +L +    ++  ++ +  L++ M ++M   DG+GLAA Q+GVL ++ V
Sbjct: 1   MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R   +  INP II    +  +  EGCLS P    DV R+ ++ V   +   +
Sbjct: 61  VDVDD---RHGKIELINPVIIEQRGE-QIGPEGCLSFPGLFGDVARADYVKVHAQNRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A G LA  +QHE+DHL+G+LF + +++
Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148


>gi|222148494|ref|YP_002549451.1| peptide deformylase [Agrobacterium vitis S4]
 gi|221735480|gb|ACM36443.1| peptide deformylase [Agrobacterium vitis S4]
          Length = 166

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 3/156 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P P+L +  + +   +  +++  D +   M +  G+G+ A  +G L RLV++DL +   
Sbjct: 8   YPHPLLAKPCQTVTAFDDRLISFADALYNAMRAAPGVGITAAHVGELMRLVILDLPELGG 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R++   ++NP+I++FS +   + EG + +P     V R   IT+RY   +   +      
Sbjct: 68  RRD---YVNPEILSFSQNTLDHDEGSVCMPGMTETVTRPRQITLRYQSLDGTVREEELQD 124

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             A C+QHE+D L+G+ +I  LSRLKRD + KK  K
Sbjct: 125 FAAICMQHEIDQLDGLFWIQRLSRLKRDRLLKKWQK 160


>gi|213965139|ref|ZP_03393337.1| peptide deformylase [Corynebacterium amycolatum SK46]
 gi|213952253|gb|EEB63637.1| peptide deformylase [Corynebacterium amycolatum SK46]
          Length = 193

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 89/170 (52%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++P+ +  S++  LI++M E M    G+GLAA Q+GV  RL V
Sbjct: 1   MTIRPIVIAGDPVLHTPTQPVTEDVSELRELIEDMYETMDRAHGVGLAANQVGVGKRLFV 60

Query: 61  IDLQDH---AHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            +  D     HR    NP++  +    T  +D     EGCLS+P       R+    V  
Sbjct: 61  YNCPDDDDVWHRGCVINPVLTTSEIPKTMPNDDGSDDEGCLSVPGLSFPTNRAEKAVVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D N +   I A G  A C+QHE+ HL+G L+ D L+   + M  K++ +
Sbjct: 121 LDENGEEVRIEATGFFARCMQHEVGHLDGFLYTDCLTGRWKRMAKKEIKR 170


>gi|288940537|ref|YP_003442777.1| peptide deformylase [Allochromatium vinosum DSM 180]
 gi|288895909|gb|ADC61745.1| peptide deformylase [Allochromatium vinosum DSM 180]
          Length = 166

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 93/163 (57%), Gaps = 12/163 (7%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ--- 64
            PD  L++VS P++  +  + + I ++ E   +  G +G+AA Q+    R+V++DL    
Sbjct: 9   LPDQRLKQVSEPVDSFDQSLRDFIADLEETRLAGPGAVGIAAPQVAHFRRIVILDLSSRP 68

Query: 65  ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              +H H    +V INP+I T  + F++ +EGCLS+PDY  +V R+  I ++  D +   
Sbjct: 69  KTPNHGH----LVLINPEI-THWEGFAMGREGCLSVPDYTGNVIRATQIRLKAQDADGVE 123

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +G  A  +QHELDHL+G+LF+D +   + D+  +K+ K
Sbjct: 124 HQYEMEGFEARAVQHELDHLDGLLFVDRVVSRRTDLYRRKVYK 166


>gi|290968494|ref|ZP_06560033.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781490|gb|EFD94079.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L]
          Length = 171

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 7/146 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +P+L+  ++P+  I   I  L+D+M E MY  +G+GLAA QI    RL+V+D        
Sbjct: 28  NPVLKAAAKPVPVITKHIKKLLDDMAETMYKANGVGLAAPQINESLRLIVLD------DG 81

Query: 71  NPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           N ++  INP+I+  S +     EGCLS+P Y   V R + I V+ ++   +      +  
Sbjct: 82  NGLIELINPEILETSTEMEEDTEGCLSVPGYYGIVSRYSKIKVKALNRRGKTVYYEPEHF 141

Query: 130 LATCLQHELDHLNGILFIDHLSRLKR 155
           LA   QHE+DHLNGILFI+    +++
Sbjct: 142 LARIFQHEIDHLNGILFIEKAKNIRK 167


>gi|75765204|pdb|1SZZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765205|pdb|1SZZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765206|pdb|1SZZ|C Chain C, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765207|pdb|1SZZ|D Chain D, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765208|pdb|1SZZ|E Chain E, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765209|pdb|1SZZ|F Chain F, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765210|pdb|1SZZ|G Chain G, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765211|pdb|1SZZ|H Chain H, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
          Length = 177

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 80/152 (52%), Gaps = 8/152 (5%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DPILR++S P+   E    +   LI +M   M   +G+GLAA QIG+L ++VV+  +D+ 
Sbjct: 10  DPILRKISEPVTEDEIQTKEFKKLIRDMFTTMRHAEGVGLAAPQIGILKQIVVVGSEDNE 69

Query: 68  HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                      + +NP I   + D S + EGCLS+P  R  V+R   I +++MD      
Sbjct: 70  RYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQF 129

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
               DG  A   QHE DHL GIL++D L   K
Sbjct: 130 DETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161


>gi|257414230|ref|ZP_04745678.2| peptide deformylase [Roseburia intestinalis L1-82]
 gi|257200762|gb|EEU99046.1| peptide deformylase [Roseburia intestinalis L1-82]
 gi|291541040|emb|CBL14151.1| peptide deformylase [Roseburia intestinalis XB6B4]
          Length = 163

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+L +  R I ++   I  LID+ML+ MY  +G+GLA  Q+GVL R+VV
Sbjct: 6   MALRTIRIQGDPVLTKKCREITEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP I+  S +     EGCLS+P     V R  ++     D N +
Sbjct: 66  IDIGE-----GPVVMINPVILEKSGE-QTGDEGCLSLPGKAGTVTRPNYVKAHAFDENME 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              I    L+A  + HELDHL+G ++ +
Sbjct: 120 EYEIEGTELMARAICHELDHLDGHMYTE 147


>gi|46446437|ref|YP_007802.1| peptide deformylase [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400078|emb|CAF23527.1| putative polypeptide deformylase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 176

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 5/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K PL  + D +LR+    I +IN  I  L+ +M+E M + DG GLAA Q+     L + 
Sbjct: 1   MKLPLAYYGDSVLRKKGSQIAEINDTIKQLVQDMIETMEANDGCGLAAPQVHQSLSLFIT 60

Query: 62  DLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +  +      +     VFINPKI+++S +    QE CLSIP  R  V R   +T++  D
Sbjct: 61  CIPQYLENDQVIPGQVRVFINPKILSYSQEVWACQEACLSIPGMRETVSRPLKVTIQATD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            N         G  A  + HE DH+NG+L+ID L   ++  I K
Sbjct: 121 LNGHTFTEEFAGFDAHVIMHENDHVNGVLYIDRLPSKRKKGIEK 164


>gi|226357360|ref|YP_002787100.1| peptide deformylase [Deinococcus deserti VCD115]
 gi|226319350|gb|ACO47346.1| putative peptide deformylase (polypeptide deformylase) (PDF)
           [Deinococcus deserti VCD115]
          Length = 220

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 87/173 (50%), Gaps = 30/173 (17%)

Query: 5   PLVIFPDPILRRVSRPIEKIN---------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           P+ ++ DP+LRR +RP++  +           +  + D MLE M+   G+GLAA Q+G+ 
Sbjct: 12  PIRLYGDPVLRRKARPLQHTDMLTVPGFDPQTVRQVADTMLETMFEARGVGLAAPQVGLP 71

Query: 56  YRLVV---------------IDLQDHAHRKNPMVFINP--KIITFSDDFSVYQEGCLSIP 98
            R+ V                 L+    R+   V +NP   ++    D S YQEGCLSIP
Sbjct: 72  VRMFVAVEYEDDEEENEGQDTPLKSRVLRE--FVMLNPVLSVLDKKKDRS-YQEGCLSIP 128

Query: 99  D-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             Y   V R+  I VRY D +   + I AD  LA   QHE DHL+GI F+D L
Sbjct: 129 GIYEEGVSRARAIQVRYTDLDGAQRTIQADDYLARVFQHEADHLDGIFFLDRL 181


>gi|213428282|ref|ZP_03361032.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
          Length = 115

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 77/110 (70%), Gaps = 3/110 (2%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +  +
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--N 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRN 115


>gi|167044672|gb|ABZ09343.1| putative Polypeptide deformylase [uncultured marine microorganism
           HF4000_APKG7H23]
          Length = 179

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 7/154 (4%)

Query: 1   MVKKPLVIFPDPILRRVS---RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +PL   PD +LR  +   R  +  +  +  LID M+E M+  +G+G+A+ Q+G  YR
Sbjct: 1   MAIRPLRYLPDQLLRTKTVSLRARDVQSPAVQRLIDEMIESMHHYNGVGIASNQVGSRYR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           + +I  Q       P V +NP+I     +  V  EGCLS+P Y+  + RS  + V  +D 
Sbjct: 61  ICII--QRPEEDAVPFVLVNPRITRREGEREVT-EGCLSLPGYQGGIVRSERVWVTALDR 117

Query: 118 NAQH-QIIYADGLLATCLQHELDHLNGILFIDHL 150
             +  Q+    GLLA  L+HE DHL+G+ FIDHL
Sbjct: 118 QGKQVQLRGETGLLAQALEHETDHLDGVAFIDHL 151


>gi|291301355|ref|YP_003512633.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
 gi|290570575|gb|ADD43540.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
          Length = 173

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 10/146 (6%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD------H 66
           +L R  R +   + ++  L+D+M   MY+ +G+GLAA QIGV  R+ VID +D      +
Sbjct: 19  VLHRRCRTVTDFDDELARLVDDMFASMYAANGVGLAANQIGVDARVFVIDCRDDDGGRLY 78

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            H  NP +   P       + +V  EGCLS+P   ADV R+   TV   D   +   + +
Sbjct: 79  GHIVNPTLREEPP----PRELNVGPEGCLSVPGQYADVARTQTATVDGFDKTGKPITLTS 134

Query: 127 DGLLATCLQHELDHLNGILFIDHLSR 152
            G  A CLQHE DHLNGI+++D L +
Sbjct: 135 TGEAARCLQHETDHLNGIVYVDKLPK 160


>gi|303243293|ref|ZP_07329698.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
 gi|302589164|gb|EFL59007.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
          Length = 186

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 6/153 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYR 57
           + K +    D  LR  SR I+K        ++ I ++ E +Y S  G+GLAA Q+GV  R
Sbjct: 9   INKSIFGLRDISLRNPSRQIQKEELREQWFIDFIKDLFETLYYSPTGVGLAAPQVGVHIR 68

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           LV ID+      KNP   INP     +D   +  E CLS+P +   V+R   I + Y D 
Sbjct: 69  LVAIDMDRDG--KNPFPLINPTYEAVNDSIVLSNESCLSVPGFVGKVQRHEKIKLTYWDV 126

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           N +   +Y +G  A  +QHE+DHLNG+L+ID +
Sbjct: 127 NGEEIELYVEGFKAKVIQHEIDHLNGVLYIDRI 159


>gi|312197386|ref|YP_004017447.1| peptide deformylase [Frankia sp. EuI1c]
 gi|311228722|gb|ADP81577.1| peptide deformylase [Frankia sp. EuI1c]
          Length = 205

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 19/180 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +  DP+LR  + P+   +  +  L+D+M+E MY+  G+GLAA Q+GV  RL V
Sbjct: 1   MTVLPIRVLGDPVLRTPAGPVTVFDDRLRRLVDDMIETMYAAPGVGLAAPQVGVGLRLFV 60

Query: 61  IDLQDHAHR------------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
            D     +R                  + P V  NP ++         QEGCLSIP    
Sbjct: 61  FDTDWQPNRPDRHEDDAVPEAAGRARGRAPRVVANP-VLELGPGEQNDQEGCLSIPGLHY 119

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
              R+A  TVR +D           GLLA CLQHE DHL G L++D L+ L R    + +
Sbjct: 120 ATARAAAATVRGVDAAGDPVEYAGTGLLARCLQHEADHLAGTLYVDRLTGLTRRSAQRAL 179


>gi|168180956|ref|ZP_02615620.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|182668254|gb|EDT80233.1| peptide deformylase [Clostridium botulinum NCTC 2916]
          Length = 178

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 8/155 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ F D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQFGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           IDL++    + P++ INPK   FS        +EGCLS P Y   V R   + +  ++  
Sbjct: 83  IDLRNG---QEPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEK 136

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +     A GLL     HE DHL+GI++ID   ++
Sbjct: 137 GEEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 171


>gi|325283926|ref|YP_004256467.1| Peptide deformylase [Deinococcus proteolyticus MRP]
 gi|324315735|gb|ADY26850.1| Peptide deformylase [Deinococcus proteolyticus MRP]
          Length = 220

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 26/173 (15%)

Query: 5   PLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           P+ ++ DP+LRR +RP++  ++          +  + D MLE M++  G+GLAA Q+G+ 
Sbjct: 9   PIRLYGDPVLRRKARPLQHTDTLQVPGFAPQTLREVADTMLETMFAARGVGLAAPQVGLG 68

Query: 56  YRLVVI-----DLQDHAHRKNPM--------VFINPK--IITFSDDFSVYQEGCLSIPD- 99
            R+ V      + +++  ++ P+        V +NPK  +I    D S   EGCLSIPD 
Sbjct: 69  VRMFVAVEYDDNEEENEGKETPLKSRVLREYVMLNPKLTVINKKKDKS-ETEGCLSIPDI 127

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   V R+  + V Y D   Q Q + A+  LA   QHE DHL+G LF+DHL +
Sbjct: 128 YEEGVPRARAVRVDYTDLEGQAQTVEAEDYLARVFQHENDHLDGKLFLDHLPQ 180


>gi|186686636|ref|YP_001869832.1| peptide deformylase [Nostoc punctiforme PCC 73102]
 gi|186469088|gb|ACC84889.1| peptide deformylase [Nostoc punctiforme PCC 73102]
          Length = 190

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 7/163 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++   +P LR+ +  +E I +  I  LI++++  +   +G+G+AA Q+   YRL ++  
Sbjct: 20  PIIQLGNPTLRQKAVWVENIQDKHIQKLIEDLIATVAKANGVGIAAPQVAQSYRLFIVAS 79

Query: 64  QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +A   N     P   INPKII  S +     EGCLS+P  R  V R   I V Y DC 
Sbjct: 80  RPNARYPNAPEMEPTAMINPKIIAHSTEVVKDWEGCLSVPGIRGLVPRYKSIEVEYTDCQ 139

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              Q       +A   QHE DHL+GI+F+D L     DMIT++
Sbjct: 140 GNLQKQELTDFIARIFQHEYDHLDGIVFVDRLES-TLDMITEQ 181


>gi|308051095|ref|YP_003914661.1| peptide deformylase [Ferrimonas balearica DSM 9799]
 gi|307633285|gb|ADN77587.1| peptide deformylase [Ferrimonas balearica DSM 9799]
          Length = 175

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 6/146 (4%)

Query: 11  DPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH- 68
           +PILR+ +RP+ +   ++I  L   ML  M +  G+G+AA Q+    RL++I  + +A  
Sbjct: 11  EPILRQRARPVSDATAAEIQTLWQRMLVTMEAAGGVGIAAPQVFEPLRLMIIASRPNARY 70

Query: 69  ----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               + +P+V INP+I+  S +   + EGCLS+P  R  V+R   + VRY+D   Q Q +
Sbjct: 71  PDAPQMDPVVLINPEILNTSGELVSFVEGCLSVPGIRGTVRRPDNVEVRYLDTQGQPQQL 130

Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150
              G  A    HE DHL G  F+D +
Sbjct: 131 SLSGFPARIFLHEFDHLEGRTFLDQV 156


>gi|159900945|ref|YP_001547192.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893984|gb|ABX07064.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 211

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 15/172 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID--LQDHAHRK 70
           +LR  ++ I   +  +  L+D+M+E M    G+G+AA Q+GV  R+VVI+   Q   H  
Sbjct: 17  VLRAKAKRITSFDQSLAGLVDDMIETMREARGVGIAAPQVGVSRRVVVIEEPAQYEEHED 76

Query: 71  NPM---------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                       V +NP+II  S++  + QEGCLS+P     V R+ ++T++Y D   + 
Sbjct: 77  GTQTQIAPAVLYVMVNPEIIKASEETHMLQEGCLSLPGRYTKVPRNKWVTIKYYDLKGRE 136

Query: 122 Q----IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Q    I   D  +    QHELDHL+GI+F D ++   + +  +K S+  +L+
Sbjct: 137 QRLRHIPAEDYKVGHIAQHELDHLDGIMFTDRMTEESKLVDYRKESESARLK 188


>gi|306836177|ref|ZP_07469161.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
 gi|304567898|gb|EFM43479.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
          Length = 184

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 3/156 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  + ++ DP+L   +  I   ++ +  L   MLE M +  G+GLAA Q+G+L R+ V
Sbjct: 1   MAELDIRLYGDPVLSSRAEEITTFDTGLRTLAQTMLETMDAAGGVGLAANQVGILKRIFV 60

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            D     A  +   V INP      +D     EGCLSIP   AD  R   + V   D   
Sbjct: 61  YDCSPIQAGLRG--VLINPVWTPLGEDMQTGPEGCLSIPGISADTPRYNRVFVSGRDVEG 118

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +   + A GLLA C+QHE DHL+G+LF+  L    R
Sbjct: 119 RPVGMVASGLLARCIQHETDHLDGVLFLRRLGDADR 154


>gi|288918232|ref|ZP_06412587.1| peptide deformylase [Frankia sp. EUN1f]
 gi|288350402|gb|EFC84624.1| peptide deformylase [Frankia sp. EUN1f]
          Length = 183

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 6/158 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-IDLQDH 66
           +  DP+LR V+ P+   + ++  L+D++ E M    G+GLAA Q+GV  R+   +D  D 
Sbjct: 8   LLGDPVLRTVADPVATFDRELRRLVDDLAETMNEAGGVGLAAPQLGVSLRVFTYLDDSDE 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                    +NP +  FS++    +EGCLS+P    D++R   +     + +     I  
Sbjct: 68  VGH-----LVNPVLGPFSEEMMDGEEGCLSLPGLSFDLRRPERVLAVGQNVHGDPVTIEG 122

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            G+L+ CLQHE DHL+GILFID L +  +    K + +
Sbjct: 123 SGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIRE 160


>gi|269956930|ref|YP_003326719.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305611|gb|ACZ31161.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
          Length = 164

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 8/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I  I+  + +L+ ++LE + +    GLAA QIGV  R   
Sbjct: 4   MAMREIRVIPDPVLRTPCDEITTIDDRVRSLVADLLETVDAEGRAGLAANQIGVNLRAFS 63

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D          +NP+I+   D+     EGCLS+P       R+A+  V  +D +  
Sbjct: 64  WNIDDEVG-----YVLNPRIVALGDELQDGDEGCLSVPGLWYPTTRAAYARVEGIDLDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             ++   GL+A CLQHE DHL+G L++D   RL+R +  + M +L
Sbjct: 119 PVVVEGAGLMARCLQHECDHLDGKLYLD---RLERSVRVRAMREL 160


>gi|25029133|ref|NP_739187.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|259505872|ref|ZP_05748774.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|39931150|sp|Q8FMD0|DEF2_COREF RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|23494420|dbj|BAC19387.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314]
 gi|259166546|gb|EEW51100.1| peptide deformylase [Corynebacterium efficiens YS-314]
          Length = 193

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 9/163 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   +R + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTREVTEPISELQELIADMYETMEVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF-------SDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            +  D     +   FINP + T        +DD S  +EGCLS+P       R+ +  V 
Sbjct: 61  FNCPDDEGTMHRGCFINPVLETSEIPETMPADDGS-DEEGCLSVPGEGFPTGRADWAKVT 119

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
            ++ + +   +   G LA C QHE+ HL+G+++ D L  R KR
Sbjct: 120 GLNEDGEEWSMEGTGFLARCFQHEVGHLDGVVYTDTLIGRWKR 162


>gi|300854550|ref|YP_003779534.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300434665|gb|ADK14432.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 150

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 7/146 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHA 67
             D ILR+  R +EK++  I+ L+ +M + +++T+ G  +AA Q+GVL R VVID+ +  
Sbjct: 9   LGDEILRKKCRAVEKVDDRILTLLKDMADTLHNTENGAAIAAPQVGVLRRAVVIDMGE-- 66

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                +  +NP+II       V  EGCLSIP+    + R A + V+ ++   +   I  +
Sbjct: 67  ---GIICLVNPEIIEEEGSQEVI-EGCLSIPNKWGKLIRPAKVKVKALNEKGEEFTITGE 122

Query: 128 GLLATCLQHELDHLNGILFIDHLSRL 153
           G LA CL HE++HL+GILFID ++  
Sbjct: 123 GDLAKCLCHEIEHLDGILFIDKVTEF 148


>gi|302530616|ref|ZP_07282958.1| polypeptide deformylase [Streptomyces sp. AA4]
 gi|302439511|gb|EFL11327.1| polypeptide deformylase [Streptomyces sp. AA4]
          Length = 188

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 17/173 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L + +R I + +  +  L+++M E MY+ +G+GLAA QIG+  R+ V
Sbjct: 1   MTVHPICIAGEPVLHQPTREITEFDDKLAALVEDMFETMYAAEGVGLAANQIGLDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS---------DDFSVYQEGCLSIPDYRADVKRSAFIT 111
            D  D    ++  V +NPK+ T           DD+    EGCLS P       R+ +  
Sbjct: 61  YDCPDDEGVEHKGVVVNPKLETSEIPETMPDPDDDW----EGCLSAPGESYPTGRAKWAK 116

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMITK 160
           V   D       +   G  A CLQHE DHL+G +++D L    +R  + M+ K
Sbjct: 117 VTGFDVEGNPIEVEGTGYFARCLQHETDHLDGFIYLDRLVGRHARAAKKMLKK 169


>gi|330880564|gb|EGH14713.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 169

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 90/163 (55%), Gaps = 12/163 (7%)

Query: 10  PD-PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           PD P+LR+VS  ++K  N ++  L+D+M E M   +G+GLAA QIGV  R++VI+   + 
Sbjct: 8   PDAPLLRKVSAQVDKFSNGELRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIEFSGNE 67

Query: 68  HRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R        P V INP +IT     +  +EGC S+P     V R A I     D +  +
Sbjct: 68  ERAPGESPVPPTVLINP-VITSGVGRTEGREGCFSVPGKIGIVPRYATIEYTAQDMDGLN 126

Query: 122 QIIYADGLLATCLQHELDHLNGILFID---HLSRLKRDMITKK 161
               A+G  A  +QHE+DHLNGIL+ID    +S  +R+ I  K
Sbjct: 127 VRGKAEGFHARIIQHEVDHLNGILYIDIASEVSLYQREPIASK 169


>gi|163790824|ref|ZP_02185249.1| peptide deformylase [Carnobacterium sp. AT7]
 gi|159873892|gb|EDP67971.1| peptide deformylase [Carnobacterium sp. AT7]
          Length = 164

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 87/146 (59%), Gaps = 4/146 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PDP+L   ++ + +I  +I+ L+++M E M + DGIG+AA Q+    RL ++++ 
Sbjct: 5   PILKYPDPMLITPTKEVTEITDEIVQLLEDMYETMVANDGIGIAAPQVNSNLRLAIVEID 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           + +        INP+I+  + + ++  EGCLS P+    +KR+  I +RY D N     +
Sbjct: 65  EESGLYE---MINPRIVHATGE-TIDVEGCLSFPEVFGTIKRADTIVLRYYDRNGDEFEV 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150
            AD  L+   QHEL+HL+G LF D +
Sbjct: 121 EADDYLSRAFQHELEHLDGKLFTDKI 146


>gi|294628122|ref|ZP_06706682.1| peptide deformylase [Streptomyces sp. e14]
 gi|292831455|gb|EFF89804.1| peptide deformylase [Streptomyces sp. e14]
          Length = 213

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL +  D  L    R + +   ++  L++++   MY+  G+GLAA Q+G+  R+ V D 
Sbjct: 39  RPLTLLGDAALAAPCREVTEFGPELAALVEDLFATMYAARGVGLAANQVGLDLRVFVYDC 98

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP+++          EGCLS+P   A V+R     V       +   
Sbjct: 99  PDDEDVRHLGHLVNPRLVAADGLLFRGPEGCLSLPGLEAGVERHDHAVVEGFTVAGEPVT 158

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   G  A CLQHE DHL+G L++DHL+  +R  + ++ ++
Sbjct: 159 VEGTGFFARCLQHECDHLDGRLYVDHLTGWRRRKVLRQAAR 199


>gi|85705032|ref|ZP_01036132.1| peptide deformylase [Roseovarius sp. 217]
 gi|85670354|gb|EAQ25215.1| peptide deformylase [Roseovarius sp. 217]
          Length = 164

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  + P+ +I      L D M+ VM +  G+GLAA Q+G +  L V
Sbjct: 1   MAPRACLRWPDKRLRMAAAPVTEITDATRALWDEMVAVMEAMPGVGLAATQLGEMQALAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S     + E    +P   A ++R   +TVR+++ + +
Sbjct: 61  VDAS--TARGQAVRMANPEILHASVQLRPHDEASPCLPGVSAMIERPRGVTVRFLNADGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +     GL AT +QH++DHL G ++ D LS +KRDM+ ++  K+
Sbjct: 119 DEERDFVGLWATSVQHQIDHLQGRMYFDRLSTVKRDMLLRRARKI 163


>gi|229547451|ref|ZP_04436176.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|307276655|ref|ZP_07557773.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|229307483|gb|EEN73470.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|306506765|gb|EFM75917.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|315028353|gb|EFT40285.1| peptide deformylase [Enterococcus faecalis TX4000]
 gi|315144145|gb|EFT88161.1| peptide deformylase [Enterococcus faecalis TX2141]
 gi|315159377|gb|EFU03394.1| peptide deformylase [Enterococcus faecalis TX0312]
          Length = 150

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 4/133 (3%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI++ + +        IN
Sbjct: 3   AQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGH---FELIN 59

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
           P II      S+  EGCLSIP+    V+R+  +TVRY D   +   + A G LA   QHE
Sbjct: 60  PVIIE-KKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQHE 118

Query: 138 LDHLNGILFIDHL 150
           +DHLNG LFID +
Sbjct: 119 IDHLNGELFIDKM 131


>gi|300934519|ref|ZP_07149775.1| peptide deformylase [Corynebacterium resistens DSM 45100]
          Length = 163

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 82/160 (51%), Gaps = 10/160 (6%)

Query: 9   FPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-Q 64
           F DP+LR V+ PI       S +  L+ +MLE M    G+GLAA Q+GV  R+ V D   
Sbjct: 4   FGDPVLRTVADPIAPAQVGESSVRTLVADMLETMDHYGGVGLAANQVGVTKRVFVYDCDG 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D  H       INP+     D+     EGCLS+P     V R+  + V  +  + +    
Sbjct: 64  DRGH------IINPEWQRIGDEEQTGPEGCLSVPGIGGTVTRAMRVRVTGLTVDGEPIDR 117

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               LLA C+QHE DHLNGI+F+ HLS  +R    K++ +
Sbjct: 118 EVTELLARCVQHETDHLNGIMFLKHLSSEERKEAMKEIRQ 157


>gi|229541139|ref|ZP_04430199.1| peptide deformylase [Bacillus coagulans 36D1]
 gi|229325559|gb|EEN91234.1| peptide deformylase [Bacillus coagulans 36D1]
          Length = 161

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 4/141 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P  IL    + +    S +  ++D M E M   DG+GLAA Q+G+  ++ VID  D
Sbjct: 4   IVKYPAAILEEKCKRVTAFGSSLKAVLDEMYETMLEADGVGLAAPQVGINQQIAVIDTGD 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R +    INPKI+T   +     EGCLS P     V R+ ++ V+  D N +   I 
Sbjct: 64  GTGRID---LINPKIVTRRGE-QTDVEGCLSFPGVYGTVSRAHYVKVKAQDANGRAFTIE 119

Query: 126 ADGLLATCLQHELDHLNGILF 146
           A+  LA  LQHE+DHL+G+LF
Sbjct: 120 AEDFLARALQHEIDHLHGVLF 140


>gi|166032719|ref|ZP_02235548.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC
           27755]
 gi|166027076|gb|EDR45833.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC
           27755]
          Length = 156

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L +  + + K++     LI++ML+ MY   G+GLAA Q+GVL R+VV
Sbjct: 1   MAIREIRVLGDDVLTKHCKEVTKMSIRTKILIEDMLDTMYEAMGVGLAAPQVGVLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P++ INP+I+  S +    +EGCLS+P     V R  ++ VR +D +  
Sbjct: 61  IDVGE-----GPIILINPEILETSGE-QTGEEGCLSVPGKCGQVTRPNYVKVRALDEDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA    HE+DHL+G +++D
Sbjct: 115 EFEMEGEGLLARAFCHEIDHLDGKMYVD 142


>gi|297560923|ref|YP_003679897.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296845371|gb|ADH67391.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 219

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 2/145 (1%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
           ++++  LID+M   MY+ +G+GLA  Q+GV  R+ V D  D    ++    +NP +    
Sbjct: 56  SAELAGLIDDMFVTMYAAEGVGLAGSQVGVDLRVFVYDCPDDDGVRHVGHVVNPVLDERD 115

Query: 85  DDFSV--YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            D +V    EGCLS+P   AD+ R+   TVR +D +    ++   G  A CLQHE DH  
Sbjct: 116 PDDAVVVESEGCLSVPGPHADLGRAEHATVRGVDRDGNPVVVSGSGYFARCLQHETDHTL 175

Query: 143 GILFIDHLSRLKRDMITKKMSKLVQ 167
           G L++D LS  +R  + KKM+++  
Sbjct: 176 GRLYVDRLSARERKRVLKKMNEMAN 200


>gi|323701801|ref|ZP_08113472.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574]
 gi|323533337|gb|EGB23205.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574]
          Length = 151

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 6/150 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V   D ILR+ ++P++++  +I+ L+DNM + MY+  G+GLAA QIGV  R+VV+D+ D
Sbjct: 6   IVEIGDEILRQKAKPVKEVTLNIIKLLDNMADTMYANKGVGLAAPQIGVSKRVVVVDVGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                     INP+I+  +    +  EGCLS+P    +V R+  I V+ ++   +     
Sbjct: 66  GLVE-----LINPEIVEATGSV-IDTEGCLSVPGMIGEVARAERIVVQGLNRKGEQVTYQ 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           A G LA   QHE+DHL+GI+++D    L++
Sbjct: 120 AKGFLARAFQHEIDHLDGIIYVDKAKNLRK 149


>gi|210633316|ref|ZP_03297750.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279]
 gi|210159178|gb|EEA90149.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279]
          Length = 178

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 2/152 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V+ PDP LR+    +E+IN +++ L++ M + M+   G GLAA Q+G   +L +ID + 
Sbjct: 6   IVLSPDPRLRQECAEVEEINGELIELVERMKDQMFENGGCGLAAPQVGQTIQLAIIDTEY 65

Query: 66  HAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + +  +P V INP I+  SD+     EGCLSIP    ++ R   + V   + +      
Sbjct: 66  SSKKDYDPYVLINPVIVEQSDNLVPSSEGCLSIPGINCEILRPDHVVVEAYNLDGDCIRY 125

Query: 125 YADG-LLATCLQHELDHLNGILFIDHLSRLKR 155
            A G L   CLQHE+DHL+G    D L+  +R
Sbjct: 126 EAAGDLFCVCLQHEIDHLHGKTMFDRLTPQQR 157


>gi|187778789|ref|ZP_02995262.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC
           15579]
 gi|187772414|gb|EDU36216.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC
           15579]
          Length = 178

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 6/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I+++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAVREILQVGDKTLKRVSKKVECIDDEIKGIIEDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIIT-FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           IDL++   R+ P++ INPK +     + S  QEGCLS P Y   V R   + +  ++   
Sbjct: 83  IDLRN---RQEPIILINPKFLKRIGKEES--QEGCLSYPGYEGIVIRPRRVVIIGLNEKG 137

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +     A GLL     HE DHL+GI++ID   ++
Sbjct: 138 EEVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKV 171


>gi|15605076|ref|NP_219861.1| peptide deformylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789079|ref|YP_328165.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
 gi|166154565|ref|YP_001654683.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
 gi|166155440|ref|YP_001653695.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|237802778|ref|YP_002887972.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804700|ref|YP_002888854.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311158|ref|ZP_05353728.1| peptide deformylase [Chlamydia trachomatis 6276]
 gi|255317459|ref|ZP_05358705.1| peptide deformylase [Chlamydia trachomatis 6276s]
 gi|255506935|ref|ZP_05382574.1| peptide deformylase [Chlamydia trachomatis D(s)2923]
 gi|301335828|ref|ZP_07224072.1| peptide deformylase [Chlamydia trachomatis L2tet1]
 gi|6831532|sp|O84357|DEF_CHLTR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123606946|sp|Q3KM05|DEF_CHLTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687417|sp|B0B7S2|DEF_CHLT2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687475|sp|B0BBY7|DEF_CHLTB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|3328774|gb|AAC67948.1| Polypeptide Deformylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167609|gb|AAX50617.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
 gi|83033878|gb|ABB97392.1| polypeptide deformylase [Chlamydia trachomatis]
 gi|83033880|gb|ABB97393.1| polypeptide deformylase [Chlamydia trachomatis]
 gi|165930553|emb|CAP04048.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
 gi|165931428|emb|CAP07002.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|231273000|emb|CAX09912.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274012|emb|CAX10805.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
 gi|296435872|gb|ADH18046.1| peptide deformylase [Chlamydia trachomatis G/9768]
 gi|296436798|gb|ADH18968.1| peptide deformylase [Chlamydia trachomatis G/11222]
 gi|296437732|gb|ADH19893.1| peptide deformylase [Chlamydia trachomatis G/11074]
 gi|297140231|gb|ADH96989.1| peptide deformylase [Chlamydia trachomatis G/9301]
          Length = 181

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 6/152 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           L  +  PILR+V+ P+ +I  ++  L+ +M E M    G+GLAA Q+G    L ++ ++ 
Sbjct: 5   LEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIMGVER 64

Query: 66  HAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                       P VFINP I   S+      EGCLSIP  R +V R   ITV   + + 
Sbjct: 65  ELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAKNLDG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Q   +  +G LA  + HE DHL+G+L+ID +S
Sbjct: 125 QQFSLALEGFLARIVMHETDHLHGVLYIDRMS 156


>gi|256372453|ref|YP_003110277.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009037|gb|ACU54604.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 164

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 6/143 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+    DP+L   +R +E I++ +  LI++M+  M+   G+GLAA Q+GV  RL V D+ 
Sbjct: 5   PIRTIGDPVLSHRAREVETIDARLDQLIEDMIVTMHEAPGVGLAAPQVGVDLRLFVWDIG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D      P V INP+I+  +  +  Y+EGCLS+P Y   ++R   + +RY+  + +   +
Sbjct: 65  D-----GPDVAINPEIVERTGTWR-YEEGCLSVPGYFWPIERPRTVLLRYVTRDGEVAEL 118

Query: 125 YADGLLATCLQHELDHLNGILFI 147
               LL    QHE DHL+G+L I
Sbjct: 119 EGSDLLGRVFQHETDHLDGVLLI 141


>gi|168704063|ref|ZP_02736340.1| peptide deformylase [Gemmata obscuriglobus UQM 2246]
          Length = 184

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V +P P LR  ++P+  I++D+      M+E+MY ++G+GLAA Q+ + Y+++V++ L 
Sbjct: 3   IVRYPHPALRAKAKPVIAIDADVQKAAAQMVELMYRSEGLGLAAPQVTLDYQMIVLNPLG 62

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +       +V INP I+         +EGCLS P    +V+R   +TV++ +   +    
Sbjct: 63  EADQPDQEVVAINPVIVEAKGSTINDREGCLSFPGLYQNVRRYKTVTVKFYNLKGELVQT 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            A  L A   QHE+DHL G LFID +  L      K + K +
Sbjct: 123 TAHDLAARVWQHEIDHLQGTLFIDKMGSLGLSRSQKDLEKFI 164


>gi|297157414|gb|ADI07126.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 209

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 3/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ +  +P+L +  R + + +  +  LID+M     + +G+GLAA QIGV  ++ V D 
Sbjct: 35  RPITVVGNPVLHKECRDVTEFDDKLAALIDDMFASQKAAEGVGLAANQIGVALKVFVYDC 94

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D    ++  V  NP +     D  V     EGCLS+P   A + R  +  VR  D   +
Sbjct: 95  PDDDGVRHVGVVCNPVLDELPADRRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAEGK 154

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 155 PIAVQGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 198


>gi|260904911|ref|ZP_05913233.1| peptide deformylase [Brevibacterium linens BL2]
          Length = 200

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI+ +P+L + +  I   + ++  LI +M E + +++G+GLAA QIGV  R+ V
Sbjct: 10  MAIHPIVIYGEPVLHQRAEKITDFDEELATLIADMHETLDASNGVGLAAPQIGVGKRIFV 69

Query: 61  IDLQDH-AHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            + +D  A  +    FINP     K+     D     EGCLS+P     +KR+  +TV  
Sbjct: 70  FNAEDEEAGVRRRGTFINPLLIASKVPDTRPDPVEETEGCLSVPSLDFPLKRADRVTVNG 129

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +D   Q   + A+G  A  +QHE DHL G L++D L +       K+ S
Sbjct: 130 LDETGQSVSLTAEGWFARIMQHEYDHLQGTLYVDRLDKRWSKKWKKEQS 178


>gi|225848346|ref|YP_002728509.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644275|gb|ACN99325.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 168

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M K P++ +PD  L++ S  +     +    ++ +   MY S  G+G+AA Q+    R +
Sbjct: 1   MEKLPILQYPDERLKKKSIEVVDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNNHIRTI 60

Query: 60  VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++D     H+ N      MV  NPKII + +   +++EGC+S+PDY  +VKR  +I V  
Sbjct: 61  IVDTSKSTHKTNKVSHGLMVLSNPKII-YGEGEIIFREGCMSVPDYTGNVKRFYYIKVEA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D N +      +G  A  +QHE+DHL+G +FI+ +   K D+  +K+ K
Sbjct: 120 LDENGKLITFDTEGFEAVVIQHEIDHLDGKVFIEKVVSPK-DIFKRKVYK 168


>gi|255282544|ref|ZP_05347099.1| peptide deformylase [Bryantella formatexigens DSM 14469]
 gi|255266837|gb|EET60042.1| peptide deformylase [Bryantella formatexigens DSM 14469]
          Length = 162

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 5/141 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +  + ++++   I  LID+M + MY   G+GLAA Q+G+L R+VVID       +
Sbjct: 11  DKVLEKKCKEVKEVTPRIRTLIDDMFDTMYEEGGVGLAAPQVGILKRIVVIDTTG----E 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P V INP I   S +   Y EGCLS+P     V R  ++ VR  D N Q  ++    LL
Sbjct: 67  EPHVLINPVIEETSGEQRGY-EGCLSLPGKSGIVTRPNYVRVRAFDENMQEYVLEGTELL 125

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  + HE DHL GI++   + 
Sbjct: 126 ARAICHECDHLEGIMYTSKVE 146


>gi|302206252|gb|ADL10594.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis C231]
 gi|302330810|gb|ADL21004.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis 1002]
 gi|308276494|gb|ADO26393.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis I19]
          Length = 169

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 1/155 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DP+L   +  +   + ++ NL+ +MLE M +  G+GLAA Q+GV  R+ V
Sbjct: 1   MTIRDIRFFGDPVLTTRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   H         INP      +D  +  EGCLSIPD + D  R   + V   D   +
Sbjct: 61  YDCS-HIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + A GL++ C+QHE DHL+G+LF+  L +  R
Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHR 154


>gi|206603587|gb|EDZ40067.1| Polypeptide deformylase [Leptospirillum sp. Group II '5-way CG']
          Length = 177

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 90/162 (55%), Gaps = 3/162 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA- 67
           + DP L   S  + +I+ +I +L+  M E++Y   GIG+AA Q+G   R  V D+   A 
Sbjct: 9   YGDPRLLVKSTEVTRIDQEISDLVRGMFELLYRVPGIGIAAPQVGCNMRFFVFDMNRRAD 68

Query: 68  -HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
              + P+  INP +I+  +     +EGCLS P     V+R+  I ++ +D   +  ++  
Sbjct: 69  PGSRTPVTIINP-VISAKEGSITQEEGCLSFPGIFVPVERALRIEIKGVDMEGKDLVLEG 127

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +GL A  +QHE+DHL G+L  +H++R  +  + K++  + ++
Sbjct: 128 EGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEIRAIEKI 169


>gi|153955363|ref|YP_001396128.1| Def3 [Clostridium kluyveri DSM 555]
 gi|219855782|ref|YP_002472904.1| hypothetical protein CKR_2439 [Clostridium kluyveri NBRC 12016]
 gi|146348221|gb|EDK34757.1| Def3 [Clostridium kluyveri DSM 555]
 gi|219569506|dbj|BAH07490.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 150

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ ++ +++ I  ++++M + MY T+ G GLAA QIG+L RL 
Sbjct: 1   MALRQIRLFGDDILRKKSKEVKAVDNKIRQILNDMADTMYDTENGGGLAAPQIGILKRLA 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII  + +  V  EGCLSIP+    +KR A + +  ++   
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKCAGEQEVI-EGCLSIPNVFGKLKRPAKVIIEALNEEG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I+     LA C  HE+DHL GILF D ++ 
Sbjct: 115 SKIILKGTKDLAKCFCHEIDHLKGILFTDLVTE 147


>gi|297748483|gb|ADI51029.1| Peptide deformylase [Chlamydia trachomatis D-EC]
 gi|297749363|gb|ADI52041.1| Peptide deformylase [Chlamydia trachomatis D-LC]
          Length = 191

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 6/154 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + L  +  PILR+V+ P+ +I  ++  L+ +M E M    G+GLAA Q+G    L ++ +
Sbjct: 13  RDLEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIMGV 72

Query: 64  QDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +             P VFINP I   S+      EGCLSIP  R +V R   ITV   + 
Sbjct: 73  ERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAKNL 132

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + Q   +  +G LA  + HE DHL+G+L+ID +S
Sbjct: 133 DGQQFSLALEGFLARIVMHETDHLHGVLYIDRMS 166


>gi|239932667|ref|ZP_04689620.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291441025|ref|ZP_06580415.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672]
 gi|291343920|gb|EFE70876.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672]
          Length = 181

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL +  DP+LR   R +     ++  L++++   MY+  G+GLAA QIG   R+ V D 
Sbjct: 14  RPLTLLGDPVLRAPCREVTDFGPELARLVEDLFATMYAARGVGLAANQIGEPLRVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP+++          EGCLS+P   A  +R     V       +   
Sbjct: 74  PDDEDVRHLGHVVNPRLVETDGVVVRGPEGCLSLPGLEAGTERHDHAVVEGFTVTGEPVT 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           ++  G  A CLQHE DHL G L+ D L+  +   + +++ +    R+
Sbjct: 134 VHGTGFFARCLQHECDHLEGRLYADRLTGWRHRRLMRQVKRASWNRE 180


>gi|289644962|ref|ZP_06477003.1| peptide deformylase [Frankia symbiont of Datisca glomerata]
 gi|289505235|gb|EFD26293.1| peptide deformylase [Frankia symbiont of Datisca glomerata]
          Length = 182

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 10/163 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR V+ P+   + ++  L+ +++E M+   G+GLAA Q+GV  R+  
Sbjct: 1   MTVREIRLLGDPVLRTVAEPVTTFDKELRRLVADLVESMHEAGGVGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            +NP +  FS++    +EGCLS+P    ++KR   +     + +  
Sbjct: 61  YHVDGEVGH-----LVNPVLGPFSEELMDGEEGCLSLPGLSFELKRPERVIAVGQNVHGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I   GLL+ C+QHE DHL+G+LFID L     D  TKK +
Sbjct: 116 PVTIEGSGLLSRCVQHETDHLDGVLFIDRL-----DPETKKAA 153


>gi|255325044|ref|ZP_05366150.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
 gi|255297609|gb|EET76920.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
          Length = 170

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 77/150 (51%), Gaps = 1/150 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L I+ DP+L   +  I K ++ +  L  +MLE M +  G+GLAA Q+G+L R+ V
Sbjct: 1   MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDNAGGVGLAANQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   H         +NP      +      EGCLSIP   A+  R   + V   D   +
Sbjct: 61  YDC-SHTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A GL+A C+QHE DHL+G+LF+  L
Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRL 149


>gi|268679608|ref|YP_003304039.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617639|gb|ACZ12004.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
          Length = 182

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 10/168 (5%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
            PI+R V++P+  I + +I +LID M+     + G+G+AA Q+G  + L +I +  + ++
Sbjct: 12  SPIIRFVAKPVSDILDPEIQSLIDAMIFTCKESKGVGIAAPQVG--HSLSIIIMASYPNK 69

Query: 70  K-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +        P   INP+II++S+  +   EGCLS+P  RA V R   I VRY+D   + Q
Sbjct: 70  RYPYAPLMEPTALINPEIISYSEASNKEWEGCLSLPGIRALVPRHNTIEVRYVDREGKAQ 129

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +    LA   QHE DHL G +FID +   +  ++ K+  +L+  ++
Sbjct: 130 YAHFKDFLARLFQHEYDHLIGKVFIDRVESTQEIIMEKEYQRLMAEKE 177


>gi|311739504|ref|ZP_07713339.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305320|gb|EFQ81388.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 170

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L I+ DP+L   +  I K ++ +  L  +MLE M    G+GLAA Q+G+L R+ V
Sbjct: 1   MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDKAGGVGLAANQVGILQRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   H         +NP      +      EGCLSIP   A+  R   + V   D   +
Sbjct: 61  YDC-SHTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A GL+A C+QHE DHL+G+LF+  L
Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRL 149


>gi|258655021|ref|YP_003204177.1| peptide deformylase [Nakamurella multipartita DSM 44233]
 gi|258558246|gb|ACV81188.1| peptide deformylase [Nakamurella multipartita DSM 44233]
          Length = 190

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 81/156 (51%), Gaps = 7/156 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  +P+VI  +P+L R +RP+ +  +  +N LI +M E   +  G GLAA QIG   RL 
Sbjct: 1   MTIRPIVICGEPVLHRPTRPVTEFGTPELNTLIQDMFETNEAAHGAGLAANQIGDDRRLF 60

Query: 60  VIDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           + D  D   R+     NP +  +P I T   D     EGCLS+P       R+ +  V+ 
Sbjct: 61  IYDCPDQGSRRRGYIINPTIETSP-IPTNMPDPDDDSEGCLSVPGENFPTGRADWARVKG 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            D + +   +   G  A CLQHE DHL+G L+ID L
Sbjct: 120 FDSDGEPIEVEGTGFFARCLQHETDHLDGHLYIDRL 155


>gi|282866652|ref|ZP_06275694.1| peptide deformylase [Streptomyces sp. ACTE]
 gi|282558554|gb|EFB64114.1| peptide deformylase [Streptomyces sp. ACTE]
          Length = 212

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  R + + + ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECRTVTEFDDELGRLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++     NP +   + +        EGCLS+P   A++ R  +  VR  D  
Sbjct: 96  DCLDDDGVRHVGAVCNPVLEELAPERRNLDASNEGCLSVPTAYAELARPDYAVVRGQDAE 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    K+M +
Sbjct: 156 GNDVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMEE 201


>gi|300858540|ref|YP_003783523.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685994|gb|ADK28916.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
          Length = 169

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 1/155 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DP+L   +  +   + ++ NL+ +MLE M +  G+GLAA Q+GV  R+ V
Sbjct: 1   MTIRDIRFFGDPVLTMRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   H         INP      +D  +  EGCLSIPD + D  R   + V   D   +
Sbjct: 61  YDCS-HIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + A GL++ C+QHE DHL+G+LF+  L +  R
Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHR 154


>gi|170761101|ref|YP_001787941.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408090|gb|ACA56501.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
          Length = 178

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 6/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I N+ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDEITGIIKNLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           IDL++    + P++ INPK +     + S  +EGCLS P Y   V R   + +  ++   
Sbjct: 83  IDLRNG---QEPIILINPKFLKKIGKEES--EEGCLSYPGYEGIVIRPRRVAITGLNEKG 137

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +     A GLL     HE DHL+GI++ID   ++
Sbjct: 138 EEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 171


>gi|306520944|ref|ZP_07407291.1| peptide deformylase 2 [Clostridium difficile QCD-32g58]
          Length = 155

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 79/125 (63%), Gaps = 6/125 (4%)

Query: 28  IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87
           I+ L+D+M E MY  DG+GLAA Q+G+L R+VVID+ +       +  INP+II  S + 
Sbjct: 37  IIQLLDDMAETMYDADGVGLAAPQVGILKRVVVIDIGEEL-----IELINPEIIETSGE- 90

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
            + +EGCLS+     +V+R  ++ VR ++ N +   +  + LLA    HE+DHL+GILF+
Sbjct: 91  QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGETIELEGEELLARAFCHEIDHLDGILFV 150

Query: 148 DHLSR 152
           D + +
Sbjct: 151 DKIEK 155


>gi|317133049|ref|YP_004092363.1| peptide deformylase [Ethanoligenens harbinense YUAN-3]
 gi|315471028|gb|ADU27632.1| peptide deformylase [Ethanoligenens harbinense YUAN-3]
          Length = 160

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   D +LR+ SR +   +  +  L+D+M + +   DG+GLAA Q+G+L R VV
Sbjct: 1   MAIRKIVTVGDDVLRKKSRVVTVFDQKLHLLLDDMRDTLLQADGLGLAAPQVGILKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I + D       + F+NP+II  ++      EGCLSIP      KR A +T+R  D N  
Sbjct: 61  IRIGDEF-----VDFVNPEIIA-AEGEQQELEGCLSIPGKWGITKRPAKVTIRAQDRNGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                 +GLLA    HE DHL+G+L+ DH  R+
Sbjct: 115 FFEKTGEGLLARAFCHETDHLDGVLYTDHALRI 147


>gi|269955166|ref|YP_003324955.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
 gi|269303847|gb|ACZ29397.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
          Length = 227

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           +P+L   +RP+ ++ + ++  LID+M   M   +G+GLAA Q+GV  R+ V DL D A  
Sbjct: 41  EPVLHTPARPVTELGTPELARLIDDMFTTMDVAEGVGLAAPQVGVDLRVFVYDLTDDAGD 100

Query: 70  KNPMVFINPKI-ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           ++    +NP++ +    D  V  EGCLS+P   A ++R    T+R +D       + A G
Sbjct: 101 RHVGAVVNPELELDLDADPEVEDEGCLSVPGAYAPLERPGGATIRGVDQLGGPVQLEATG 160

Query: 129 LLATCLQHELDHLNGILFIDHLSRLK-----RDMITKKMSKLVQLRD 170
            LA C  HE  HL+G L+ DHL+  +     R    K+   L Q R+
Sbjct: 161 YLARCFIHEAQHLDGTLYWDHLTPEQQADALRQRDEKRAEVLAQRRE 207


>gi|307328554|ref|ZP_07607728.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306885822|gb|EFN16834.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 200

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ ++ +P+L +  R +   + ++  L+D+M     + +G+GLAA QIGV  ++ V D 
Sbjct: 26  RPITVYGNPVLHKECRDVTVFDEELARLVDDMFASQRAAEGVGLAANQIGVDLKVFVYDC 85

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D    ++     NP +     D  V     EGCLS+P    ++ R  +  VR  D + +
Sbjct: 86  MDDEGVRHVGAVCNPVLEELPADRRVLDDSNEGCLSVPTAYMELARPDYAVVRGQDLDGE 145

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G  A CLQHE DHL G L+ D LS+  R  + K+M++
Sbjct: 146 PIAVRGTGYFARCLQHETDHLYGYLYTDRLSKRDRKDVLKQMAE 189


>gi|297192182|ref|ZP_06909580.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720173|gb|EDY64081.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 214

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 38  TSRPITVVGNPVLHKECKDVTEFDDKLAALIDDMFASQKTAEGVGLAANQIGVDLKVFVY 97

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +   + +  V     EGCLS+P   A + R  +  VR  D  
Sbjct: 98  DCPDDEGVRHTGVVCNPVLEELAPEQRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 157

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 158 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 203


>gi|320162554|ref|YP_004175779.1| peptide deformylase [Anaerolinea thermophila UNI-1]
 gi|319996408|dbj|BAJ65179.1| peptide deformylase [Anaerolinea thermophila UNI-1]
          Length = 171

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 5/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LRR ++ +   + D+  LID+M+E M +  G+GLAA Q+GV  R++V
Sbjct: 1   MAVRTIVTVPDPVLRRKAKKVTTFDKDLQVLIDDMIETMRAAPGVGLAAPQVGVSQRVIV 60

Query: 61  IDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ++  +         K     +NP+I+  S +     EGCLSIP    +V+R   I V+ +
Sbjct: 61  VEYGEGEEEDENVPKKLYAVVNPEIVEASPERVTGVEGCLSIPRMMGEVERHERIVVKGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +   +       G  A   QHE+DHL GIL+ D  +
Sbjct: 121 NRYGKPVKYKLSGWTARIFQHEIDHLEGILYTDRAT 156


>gi|331091587|ref|ZP_08340423.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403614|gb|EGG83170.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 157

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +  + ++ I    + LI++M + MY   G+GLAA Q+G+L R+V ID+ +     
Sbjct: 11  DEVLTKKCKEVKTITPRTVELIEDMFDTMYDEMGVGLAASQVGILKRIVTIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP+II  S +     EGCLS+P     V R  +  VR  D + Q   I  +GLL
Sbjct: 66  GPILLINPEIIETSGE-QTGDEGCLSVPGKAGQVTRPFYAKVRACDIDMQPFEIEGEGLL 124

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A    HE+DHL+G L++D + 
Sbjct: 125 ARAFCHEIDHLDGHLYVDKVE 145


>gi|256424099|ref|YP_003124752.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
 gi|256039007|gb|ACU62551.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
          Length = 191

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 14/161 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +  PILR+   P++K    +  LI+NM   + + +G GLA  QI +  R+ +ID +
Sbjct: 2   PIVPYGSPILRKQCSPVDKNYDGLDKLIENMWHTLENANGSGLATPQINLPIRIFIIDSE 61

Query: 65  DHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
              +  NP               VFINP+I  +S+      EGCLSIP   A V R   +
Sbjct: 62  TSFNTMNPEERKVHFEGDNGIREVFINPEITEYSEAKCDDLEGCLSIPGVAAIVSRPYAV 121

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + Y D N Q      +GL A  +QHE DH+ G L++D+LS
Sbjct: 122 KIEYYDRNFQKHTKAFNGLTARIIQHEFDHIEGRLYLDYLS 162


>gi|119494635|ref|ZP_01624754.1| peptide deformylase [Lyngbya sp. PCC 8106]
 gi|119452038|gb|EAW33257.1| peptide deformylase [Lyngbya sp. PCC 8106]
          Length = 143

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 71/120 (59%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ ++ I +++ D   LI  ML+ MYS DGIGLAA Q+GV  +L+VID +      
Sbjct: 24  DRVLRQSAKRISRVDDDTRRLIREMLQTMYSADGIGLAAPQVGVQKQLIVIDCEPDNAAT 83

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ INP I   S + S +QEGCLSIP    DV R   I V + D   + + I A+ LL
Sbjct: 84  PPLILINPTIKKSSQEISPFQEGCLSIPGVYMDVTRPEVIEVSFKDETGRPRTIRANELL 143


>gi|124516653|gb|EAY58161.1| Polypeptide deformylase [Leptospirillum rubarum]
          Length = 177

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 5/169 (2%)

Query: 4   KPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           KP  I  + DP L   S  + +I+ ++ + +  M E++Y   GIG+AA Q+G   R  V 
Sbjct: 2   KPAGILSYGDPRLLIKSTEVTRIDQEMSDFVRGMFELLYRVPGIGIAAPQVGCNMRFFVF 61

Query: 62  DLQDHA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D+   A    + P+  INP +I+  +     +EGCLS P     V+R+  I ++ +D   
Sbjct: 62  DMNRRADPGSRTPVTMINP-VISAKEGAITQEEGCLSFPGIFVPVERALRIEIKGVDMEG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +  ++  +GL A  +QHE+DHL G+L  +H++R  +  + K+M  + ++
Sbjct: 121 KDLVLEGEGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEMRAIEKI 169


>gi|25028276|ref|NP_738330.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|259507334|ref|ZP_05750234.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|39931152|sp|Q8FT51|DEF1_COREF RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|23493560|dbj|BAC18530.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314]
 gi|259165045|gb|EEW49599.1| peptide deformylase [Corynebacterium efficiens YS-314]
          Length = 169

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 5/157 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + IF DP+L   +  +   +  +  LID+M + M    G+GLAA Q+GVL R+ V
Sbjct: 1   MTVRDVRIFGDPVLTSRADEVVDFDESLATLIDDMFDTMEDAGGVGLAANQVGVLRRVFV 60

Query: 61  IDLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D    D   R +    +NP      ++    +EGCLSIPD  A+  R   + +   D +
Sbjct: 61  FDCSHVDGGLRGH---VVNPVWEPIGEETQTGKEGCLSIPDVSAETTRYETVKLSGQDRD 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                + A GLL+ C+QHE DHL+G+LF+  L   +R
Sbjct: 118 GNPIGLVASGLLSRCIQHETDHLDGVLFLKRLDPAER 154


>gi|182436096|ref|YP_001823815.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776722|ref|ZP_08235987.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1]
 gi|178464612|dbj|BAG19132.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657055|gb|EGE41901.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1]
          Length = 212

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECKDVTEFDDALARLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +   + +  V     EGCLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGVRHTGVICNPVLEELAPEARVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M +
Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201


>gi|302389590|ref|YP_003825411.1| peptide deformylase [Thermosediminibacter oceani DSM 16646]
 gi|302200218|gb|ADL07788.1| peptide deformylase [Thermosediminibacter oceani DSM 16646]
          Length = 155

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 6/145 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + D +LR+ S+ +   +  +  L+ +M E M   +G+GLAA Q+G+L R++VID+ +   
Sbjct: 9   YGDEVLRKKSKKVTVFDEKLKQLLADMAETMRHANGVGLAAPQVGILKRVIVIDVGEGL- 67

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +  INP+II+   +  V  EGCLSIP    +V R   + VR  +   +   I  + 
Sbjct: 68  ----IELINPEIISKEGEV-VEIEGCLSIPGITGEVPRPQKVRVRAQNPEGEFVEIEGED 122

Query: 129 LLATCLQHELDHLNGILFIDHLSRL 153
           LLA  L HE+DHL+GILFID   R+
Sbjct: 123 LLARALCHEIDHLDGILFIDKAKRI 147


>gi|138894692|ref|YP_001125145.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2]
 gi|196247688|ref|ZP_03146390.1| peptide deformylase [Geobacillus sp. G11MC16]
 gi|134266205|gb|ABO66400.1| Polypeptide deformylase [Geobacillus thermodenitrificans NG80-2]
 gi|196212472|gb|EDY07229.1| peptide deformylase [Geobacillus sp. G11MC16]
          Length = 157

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +P P+L +    +   +  +  L+D+M E M + DG+GLAA Q+G+  ++ V+D+ 
Sbjct: 5   PIVTYPAPVLEQPCARVTVFDRQLGRLLDDMYETMIAADGVGLAAPQVGIAKQVAVVDIG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R   +  INP II    +  +  EGCLS P    +V R+ ++ VR  +   +   +
Sbjct: 65  DEHGR---IELINPVIIEARGE-QIDVEGCLSFPGLFGEVPRANYVKVRAQNRRGRLFTL 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
            A G LA  LQHE+DHL+G+LF   + R
Sbjct: 121 SATGFLARALQHEIDHLHGVLFTSKVIR 148


>gi|311894799|dbj|BAJ27207.1| putative polypeptide deformylase [Kitasatospora setae KM-6054]
          Length = 181

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ IF DP+LR  ++P+   + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MAVQPIRIFGDPVLRATAKPVTVFDKELRKLVKDLTDTMLEAPGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            INP + + +++     EGCLS+P  R D +R+  +  + ++ + +
Sbjct: 61  YNVDGVVGH-----LINPDL-SLTEEEQDGPEGCLSLPGLRFDTRRAYGVVAKGVNMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +    LLA C+QHE DHL+GI+FID L R  R    K + +
Sbjct: 115 PVEVEGTQLLARCIQHETDHLDGIIFIDRLDRETRKAAMKAIRE 158


>gi|291450059|ref|ZP_06589449.1| polypeptide deformylase [Streptomyces albus J1074]
 gi|291353008|gb|EFE79910.1| polypeptide deformylase [Streptomyces albus J1074]
          Length = 215

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 75/145 (51%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL +  DP+L      +      +  L++++   MY+  G+GLAA QIGV  R+ V D 
Sbjct: 46  RPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHDC 105

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D   R++    +NP+++          EGCLS+P   A  +R     V  +D   + + 
Sbjct: 106 PDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPRT 165

Query: 124 IYADGLLATCLQHELDHLNGILFID 148
           ++  G  A CLQHE DHL+G L++D
Sbjct: 166 VHGTGFFARCLQHESDHLDGTLYVD 190


>gi|15835247|ref|NP_297006.1| peptide deformylase [Chlamydia muridarum Nigg]
 gi|270285419|ref|ZP_06194813.1| peptide deformylase [Chlamydia muridarum Nigg]
 gi|270289433|ref|ZP_06195735.1| peptide deformylase [Chlamydia muridarum Weiss]
 gi|301336816|ref|ZP_07225018.1| peptide deformylase [Chlamydia muridarum MopnTet14]
 gi|13878461|sp|Q9PK41|DEF_CHLMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|7190671|gb|AAF39461.1| polypeptide deformylase [Chlamydia muridarum Nigg]
          Length = 181

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 6/152 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           L  +  PILR+V+ PI++I  ++  L+ +M E M    G+GLAA Q+G    L ++ ++ 
Sbjct: 5   LEYYDSPILRKVAAPIDEITDELRQLVLDMSETMTFYKGVGLAAPQVGHSVALFIMGVEK 64

Query: 66  HAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                       P VFINP I   S+      EGCLSIP  R +V R   ITV   + + 
Sbjct: 65  ELDDGELIFCDFPKVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVTAKNLDG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Q   +  +G LA  + HE DHL+G+L+ID +S
Sbjct: 125 QPFSMTLEGFLARIVMHETDHLHGVLYIDRMS 156


>gi|325104375|ref|YP_004274029.1| peptide deformylase [Pedobacter saltans DSM 12145]
 gi|324973223|gb|ADY52207.1| peptide deformylase [Pedobacter saltans DSM 12145]
          Length = 194

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 97/181 (53%), Gaps = 15/181 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++ +   IL++    IEK   ++  LI +M E M + +G GLA+ QIG+  RL ++
Sbjct: 1   MKRSILAYGHHILKQKCNYIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60

Query: 62  DLQD------HAHRKNPM---------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           D +          RK             FIN KII  S++    +EGCLSIP+    VKR
Sbjct: 61  DSKSTFDNLGEEDRKFYFPQDDKGIMETFINAKIIQRSEELWDDEEGCLSIPNLFYKVKR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +  IT+ Y + N + QI    G  A  +QHE DH  G+L++D+L  L + ++  K+ K++
Sbjct: 121 NWAITIEYYNRNFEKQIRTFSGTTARMIQHEYDHTEGVLYLDYLKPLTKRLMASKLQKIL 180

Query: 167 Q 167
           +
Sbjct: 181 K 181


>gi|302542647|ref|ZP_07294989.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302460265|gb|EFL23358.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 218

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ +  +P+L +  + + + + ++  LID+M     + +G+GLAA QIGV  ++ V D 
Sbjct: 44  RPITVVGNPVLHKECQDVTEFDDELAALIDDMFASQRAAEGVGLAANQIGVDRKVFVYDC 103

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D    ++  V  NP +     D  V     EGCLS+P    ++ R  +  VR  D    
Sbjct: 104 LDDEGVRHVGVVCNPVLEELPADRRVLDDSNEGCLSVPTAYCELARPDYAVVRGQDAEGN 163

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G  A CLQHE DHL G L+ID LS+  R  + ++M++
Sbjct: 164 PITVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDVLRQMAE 207


>gi|320355330|ref|YP_004196669.1| peptide deformylase [Desulfobulbus propionicus DSM 2032]
 gi|320123832|gb|ADW19378.1| peptide deformylase [Desulfobulbus propionicus DSM 2032]
          Length = 168

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +P P+LR+ +  I   + ++  LI++M + MY+  G+GLAA QIGV  +LV+
Sbjct: 1   MAIREIITYPHPVLRQKAEKITVFDQELATLIEDMADTMYNAPGVGLAANQIGVARQLVL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     + +N +V INP+ I+  +     +EGCLS+ +    VKR   I V  +D    
Sbjct: 61  VDRSTKDNERNYLVLINPE-ISAGEGSVTDEEGCLSVIECYDKVKRFKKIHVTALDREGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                A+   A  +QHE+DHL G LFID LS
Sbjct: 120 PLEFDAEDRFARIIQHEVDHLLGTLFIDRLS 150


>gi|258489222|gb|ACV72595.1| peptide deformylase [Pseudomonas syringae pv. cerasicola]
          Length = 169

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 91/163 (55%), Gaps = 12/163 (7%)

Query: 10  PD-PILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           PD P+LR+VS  ++K ++D +  L+D+M E M   +G+GLAA QIGV  R++VI+   + 
Sbjct: 8   PDAPLLRKVSAQVDKFSNDELRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIEFSGNE 67

Query: 68  HRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R        P V INP +IT     +  +EGC S+P     V R A I     D +  +
Sbjct: 68  ERAPGESPVPPTVLINP-VITSGVGRTEGREGCFSVPGKIGIVPRYATIEYTAQDMDGLN 126

Query: 122 QIIYADGLLATCLQHELDHLNGILFID---HLSRLKRDMITKK 161
               A+G  A  +QHE+DHLNGIL+ID    +S  +R+ +  K
Sbjct: 127 VRGKAEGFHARIIQHEVDHLNGILYIDIASEVSLYQREPVASK 169


>gi|88855001|ref|ZP_01129666.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
 gi|88815529|gb|EAR25386.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
          Length = 205

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++I  DP+L   + P+   +S +  L+ +M E M    G+GLAA Q+GV  R+ V
Sbjct: 19  MAVLPIIITGDPVLHTPANPVTAFDSSLNTLVSDMFETMEEAPGVGLAAPQVGVPLRVFV 78

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQ------EGCLSIPDYRADVKRSAFITV 112
            D    D AH +   V INP++  +     VY+      EGCLSIP  R  + R+  + +
Sbjct: 79  YDWIDDDDAHWRG--VAINPEL--WHTPTPVYEPGEADEEGCLSIPGERFGLVRAERVIL 134

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           R +D + +   I A G LA   QHE DHL+G+L+ D L
Sbjct: 135 RAVDLDQKPFEIEASGWLARIFQHEYDHLDGVLYADRL 172


>gi|146276206|ref|YP_001166365.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554447|gb|ABP69060.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 163

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P++ +PDP   R+S+P         +  L  +ML  MY   G GLAA Q+G + RL
Sbjct: 1   MAVRPILRWPDP---RLSQPCAPAVPGPALEELASDMLATMYHAQGRGLAAPQVGEMVRL 57

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            V+D         P VF+NP+I+  S +     EGCLSI   R  V R+  I +R+    
Sbjct: 58  FVMDTVWKDGPAEPQVFVNPEILWMSGERVEGPEGCLSIAGPRLTVARAPEIRLRWTSLF 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFI 147
              Q     G  A C QHE+DHL+GI+ +
Sbjct: 118 GAEQEALLSGFAAICAQHEIDHLDGIVIL 146


>gi|239978163|ref|ZP_04700687.1| polypeptide deformylase [Streptomyces albus J1074]
          Length = 183

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 75/145 (51%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL +  DP+L      +      +  L++++   MY+  G+GLAA QIGV  R+ V D 
Sbjct: 14  RPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D   R++    +NP+++          EGCLS+P   A  +R     V  +D   + + 
Sbjct: 74  PDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPRT 133

Query: 124 IYADGLLATCLQHELDHLNGILFID 148
           ++  G  A CLQHE DHL+G L++D
Sbjct: 134 VHGTGFFARCLQHESDHLDGTLYVD 158


>gi|218442239|ref|YP_002380568.1| peptide deformylase [Cyanothece sp. PCC 7424]
 gi|218174967|gb|ACK73700.1| peptide deformylase [Cyanothece sp. PCC 7424]
          Length = 176

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 7/157 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD---- 65
           +PILR+ ++ +E I    +  LID+++    S +G+G+AA Q+   YRL ++  +     
Sbjct: 12  NPILRQNAQSVENITDITLQTLIDDLIATAASANGVGIAAPQVSQSYRLFIVASRPSPRY 71

Query: 66  -HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +A   NP   INP+II+ S +     EGCLS+P  R  V R   ITV Y+D     Q  
Sbjct: 72  PNAPEMNPTPMINPRIISHSPEKVKGWEGCLSVPGLRGLVPRYHTITVEYLDRYGNLQRQ 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                +A   QHELDHL+GILF+D L    +D+ T++
Sbjct: 132 ELTDFVARIFQHELDHLDGILFVDRLES-SQDLYTEE 167


>gi|91205481|ref|YP_537836.1| polypeptide deformylase [Rickettsia bellii RML369-C]
 gi|91069025|gb|ABE04747.1| Polypeptide deformylase [Rickettsia bellii RML369-C]
          Length = 195

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 16/161 (9%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH- 68
           P+ +LR  S P+  I+S + + + +MLE MY+ +GIG++A+Q+G   R +++D+    + 
Sbjct: 18  PNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALIVDIPKEEND 77

Query: 69  --RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR------ADVKRSAFITVRYMDCNAQ 120
             ++ P   INP++   S++  +  E CLSI           DV+R   I++ Y+D    
Sbjct: 78  QIKREPFFIINPEVNYLSEEKVILNEDCLSIRKEDGIAFIIGDVERPKNISISYIDLEGN 137

Query: 121 HQIIYADG-------LLATCLQHELDHLNGILFIDHLSRLK 154
            + +  +G         + CLQHELDHL+GILFID L   K
Sbjct: 138 SKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRLYNAK 178


>gi|168334698|ref|ZP_02692834.1| peptide deformylase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 160

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 6/138 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPILR+VSRP+ K +  + + +++M E M S  G+GLAA Q+G L R+ +ID+ +     
Sbjct: 11  DPILRKVSRPVVKFDPLLHSFLNDMEETMRSASGVGLAAPQVGTLKRVFIIDIGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             + FINP II F D      EGCLS+P     V R   +T++  D    H  I    L 
Sbjct: 66  GLVEFINP-IIIFEDGEQTGDEGCLSVPGRYGVVTRPNTVTIKAQDRYGNHFEITKSELF 124

Query: 131 ATCLQHELDHLNGILFID 148
           A  + HE DHL+G +F+D
Sbjct: 125 ARAICHENDHLDGKIFVD 142


>gi|183220960|ref|YP_001838956.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
 gi|189911055|ref|YP_001962610.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|238687791|sp|B0SHH1|DEF_LEPBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687819|sp|B0SQM2|DEF_LEPBP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167775731|gb|ABZ94032.1| N-formylmethionyl-tRNA deformylase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779382|gb|ABZ97680.1| Peptide deformylase (PDF; Polypeptide deformylase) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 179

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 80/153 (52%), Gaps = 9/153 (5%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +PILR+ S  +   E    D   LI +M E M   DG+GLAA QIGVL +LVV+  +D  
Sbjct: 11  NPILRQTSEDVSESEIQTKDFKKLIRDMFETMRHADGVGLAAPQIGVLKKLVVVGQEDDN 70

Query: 68  HR--KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R    P V     +NP+I   S     + EGCLS+P  R  V+R   I +++ D N   
Sbjct: 71  ERYPGTPEVPNQIILNPEITPLSPPRDGFWEGCLSVPGMRGYVERPNKIRMKWRDENYVE 130

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                +G  A  LQHE DHL G+L++D L   K
Sbjct: 131 HDEIIEGYRAIVLQHECDHLFGVLYVDRLKSTK 163


>gi|72162127|ref|YP_289784.1| peptide deformylase [Thermobifida fusca YX]
 gi|71915859|gb|AAZ55761.1| peptide deformylase [Thermobifida fusca YX]
          Length = 221

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           V+  D + RR +   E    ++  LID+M   MY  +G+GLAA Q+GV  R+ V D  D 
Sbjct: 42  VVGEDVLHRRNADVTEFGTPELHTLIDDMFRTMYVAEGVGLAANQVGVDLRVFVYDCPDD 101

Query: 67  AHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
              ++    INP + T+    +   V  EGCLS+P   A++ R+ +  V   D +     
Sbjct: 102 DGVRHVGHVINPVLETWGAEEEGLVVENEGCLSVPGPHAELARAPYARVTGFDRDGNPVT 161

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +   G  A CLQHE DH  G L+ID LS+ +R  + K M ++
Sbjct: 162 VEGSGYFARCLQHETDHTLGRLYIDRLSKRERKKVLKAMEEM 203


>gi|296117966|ref|ZP_06836549.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969197|gb|EFG82439.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 169

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K + ++ DP+L   +  I + +  +  L ++MLE M    G+GLAA QIG+L R+ V
Sbjct: 1   MTVKAIRLYGDPVLTTRAGEITEFDESLEKLAEDMLETMDDAGGVGLAANQIGLLKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             INP      D   V  EGCLSIPD     +R   ++V   D +  
Sbjct: 61  YDCS-SVETGMRGAIINPVWEAVGDKTQVGNEGCLSIPDISMPTERFETVSVSGQDVHGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              +   GL+A C+QHE DHL+G+LF   L RL+ D   + M+++
Sbjct: 120 PVSMVVSGLMARCVQHETDHLDGVLF---LQRLETDDRKQAMAQI 161


>gi|119485654|ref|ZP_01619929.1| polypeptide deformylase [Lyngbya sp. PCC 8106]
 gi|119456979|gb|EAW38106.1| polypeptide deformylase [Lyngbya sp. PCC 8106]
          Length = 175

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 17/161 (10%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           +P+LRR ++PI  I + D+  LIDN++  +  T+G+G+AA Q+    RL+++     A R
Sbjct: 12  NPVLRRHAQPITDIADQDLQTLIDNLIATVLKTNGVGIAAPQVSRSDRLLIV-----ASR 66

Query: 70  KN----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            N          P   INPKI+  S +     EGCLSIP  R  V R   I V Y D + 
Sbjct: 67  PNRRYPQAPLMAPTAMINPKIVNHSTEQEKGWEGCLSIPGVRGLVPRYQTIQVEYTDRSG 126

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           Q Q       +A   QHE DHL GI+F+D ++  ++D+IT+
Sbjct: 127 QLQRQQLTDFVARIFQHEYDHLEGIVFLDRVND-EQDVITE 166


>gi|297623929|ref|YP_003705363.1| peptide deformylase [Truepera radiovictrix DSM 17093]
 gi|297165109|gb|ADI14820.1| peptide deformylase [Truepera radiovictrix DSM 17093]
          Length = 212

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 30/175 (17%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61
           F DP+LR+V+RP+   + ++  L  +M+E M+  +G+GLAA QIG+  RL V        
Sbjct: 8   FGDPVLRKVARPVTHFDGELETLAKDMIETMFEANGVGLAAPQIGLSKRLFVALELAPRA 67

Query: 62  -------DLQDHAHRKNP------------MVFINPKIITFSD-DFSVYQEGCLSIPD-Y 100
                  + +  A   +P             V +NP+II  S   + V  +GCLS+P  +
Sbjct: 68  AEEAAGQEGEAEAEALSPDEKRERWGVVAEHVMVNPEIIARSGTQYGV--DGCLSVPGLF 125

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              +KR   + VRY D         A+G  A  +QHELDHL+G+LF D L   +R
Sbjct: 126 IEKMKRDRTVRVRYQDLQGAWHEREAEGHFAHVIQHELDHLDGVLFFDRLPEAER 180


>gi|227547872|ref|ZP_03977921.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227080057|gb|EEI18020.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 190

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 6/162 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++ +E+  +++  LI +M E M +  G+GLAA Q+GV  RL V
Sbjct: 1   MTIRPIVIHGDPVLHEPTKAVEQPVAELQELIADMHETMDAAYGVGLAANQVGVPLRLFV 60

Query: 61  IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               D    +     NP++  +    T   D     EGCLS+P       R+++  V  +
Sbjct: 61  YHCPDGDRMRRGTVINPVLETSEVPKTMPSDDGDDDEGCLSVPGESWPTGRASWAKVTGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRD 156
           D N    ++  +G  A CLQHE+ HL+G+++ D L+ R KR+
Sbjct: 121 DENGDEVVVEGEGFFARCLQHEVGHLDGVVYTDVLTGRYKRE 162


>gi|158313554|ref|YP_001506062.1| peptide deformylase [Frankia sp. EAN1pec]
 gi|238686856|sp|A8LE21|DEF_FRASN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158108959|gb|ABW11156.1| peptide deformylase [Frankia sp. EAN1pec]
          Length = 183

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 6/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-IDLQDHAHR 69
           DP+LR V+ P+   + ++  L+D++ + M    G+GLAA Q+GV  R+   +D  D    
Sbjct: 11  DPVLRTVADPVATFDRELRRLVDDLADTMRDAGGVGLAAPQLGVSLRIFTYLDDSDEVGH 70

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
                 INP +  FS++    +EGCLS+P    D++R   +     + +     +   G+
Sbjct: 71  -----LINPVLGPFSEEMMDGEEGCLSLPGLAFDLRRPERVLAVGQNSHGDPVTVEGSGI 125

Query: 130 LATCLQHELDHLNGILFIDHLSR 152
           L+ CLQHE DHL+GILFID L +
Sbjct: 126 LSRCLQHETDHLDGILFIDRLDK 148


>gi|315604523|ref|ZP_07879586.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313535|gb|EFU61589.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 163

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I   +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPSVKALVEDLLEGVDMEGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++       +    +NP+I+  S+D +    EGCLS+PD     KRS +      D + 
Sbjct: 61  WNID-----GDIGYVLNPRIVALSEDEYQDGDEGCLSVPDLWYPTKRSWYARCEGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +  ++  + L+A C+QHE DHL+G ++ID L R  R
Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRPTR 151


>gi|29829575|ref|NP_824209.1| polypeptide deformylase [Streptomyces avermitilis MA-4680]
 gi|39931079|sp|Q82IV0|DEF1_STRAW RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|29606683|dbj|BAC70744.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
          Length = 216

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +    +++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTDFGAELEQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D QD    ++  V  NPK++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCQDDEGTRHVGVVCNPKLVDLPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|148272776|ref|YP_001222337.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830706|emb|CAN01646.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 188

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R +E  + D+  L+ +M + M    G+GLAA Q+GV  R+ V
Sbjct: 1   MAVLPIRITGDPVLHAPAREVEAFDDDLRTLVADMFDTMDEAPGVGLAAPQVGVPLRVFV 60

Query: 61  IDLQDHAHRK------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
              +            NP +FI P  +  +D+    +EGCLS P  R  + R+    +R 
Sbjct: 61  YSYETDEGEPLRGVAVNPDLFITPVAVREADE-DTEEEGCLSFPGERFPLVRADRAILRA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D + +   I A G  A  LQHE DHL+G+L+ D L+ + R  + K + K
Sbjct: 120 VDLDGRPFEIQAAGWFARILQHEFDHLDGLLYTDRLAHVHRKPVAKVIRK 169


>gi|119946929|ref|YP_944609.1| peptide deformylase [Psychromonas ingrahamii 37]
 gi|119865533|gb|ABM05010.1| peptide deformylase [Psychromonas ingrahamii 37]
          Length = 182

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 7/162 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+     P+LR+ +  +E + +D    LI+ M+  +    G+G+AA QI    R+ ++  
Sbjct: 10  PIAQLGHPVLRQRATEVENVLADECQQLINQMMFAVSEAGGVGIAAPQIHHSVRMFIMCS 69

Query: 64  QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +A   +     P   INP+I+ +S D     EGCLS+P  R  V R + ITVRY+D  
Sbjct: 70  KPNARYPDAPLMAPTAIINPEILHYSSDKVKGWEGCLSVPSMRGLVPRHSQITVRYVDQQ 129

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              Q     G +A   QHELDHLNG+ FID L   + D+I++
Sbjct: 130 GNKQQQELTGFIARIFQHELDHLNGLTFIDQLESTQ-DLISE 170


>gi|325121302|gb|ADY80825.1| peptide deformylase 2 [Acinetobacter calcoaceticus PHEA-2]
          Length = 160

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 18/152 (11%)

Query: 13  ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           IL+  + P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R++++     A R
Sbjct: 14  ILKLTAAPVSVNELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRVIIV-----ASR 68

Query: 70  KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            NP          +V +NP+I+ FSD+  + +EGCLS+PD R  V+R+  + V+Y+    
Sbjct: 69  PNPRYPDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVKVKYLTLQG 128

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 129 ETVETNFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|220927497|ref|YP_002504406.1| peptide deformylase [Clostridium cellulolyticum H10]
 gi|219997825|gb|ACL74426.1| peptide deformylase [Clostridium cellulolyticum H10]
          Length = 151

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 7/147 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D +LR+  RP++++N  +  L+ +M + MY+T +G GLAA Q+G+L R+VVID+ D    
Sbjct: 11  DEVLRKKCRPVDEVNDKVRELLKDMADTMYNTGNGAGLAAPQVGILKRIVVIDMGDGL-- 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +  +NP+I+       V  EGCLSI      V R   + V+ ++   +  II     
Sbjct: 69  ---INLVNPEIVEQKGSQEVI-EGCLSILGKWGKVIRPTEVKVKALNEKGEEVIITGKKD 124

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRD 156
           +A CL HE+DHL+GILF D ++    D
Sbjct: 125 MAKCLCHEIDHLDGILFTDKVTEYIED 151


>gi|295836587|ref|ZP_06823520.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|197697279|gb|EDY44212.1| peptide deformylase [Streptomyces sp. SPB74]
          Length = 210

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  +P+L +    +     ++  L+D+M     + +G+GLAA Q+GV  ++ V D Q
Sbjct: 37  PITVVGNPVLHKECADVTDFGPELAKLVDDMFASQRAAEGVGLAANQVGVSLKVFVYDCQ 96

Query: 65  DHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D    ++  V  NPK+     +        EGCLS+P   A   R+ +  V   D +   
Sbjct: 97  DDQGERHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGNA 156

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +   G  A CLQHE DHL G L++D LS+  R    K+M++
Sbjct: 157 IKVRGTGYFARCLQHETDHLYGSLYLDRLSKRDRKDALKQMAE 199


>gi|158336649|ref|YP_001517823.1| peptide deformylase [Acaryochloris marina MBIC11017]
 gi|158306890|gb|ABW28507.1| peptide deformylase [Acaryochloris marina MBIC11017]
          Length = 176

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 6/162 (3%)

Query: 11  DPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD---- 65
           +P LR+ + P++   + +I +LID+++  M  ++G+G+AA Q+G+  ++V++  +     
Sbjct: 13  NPKLRQTACPVQNPTDLEIQSLIDDLIGTMEESNGVGIAAPQVGIDLQVVIVASRPTLRY 72

Query: 66  -HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            HA   +P+  INP I     +     EGCLS+P  R  V R++ I+V Y D N Q Q  
Sbjct: 73  PHAPHMDPIAMINPHITPIGAERVKDWEGCLSVPGIRGLVPRASTISVEYQDRNGQAQTE 132

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                +A  +QHE DHL G +FID +   +  +   +  KLV
Sbjct: 133 IFQDFVARIIQHECDHLQGYVFIDRVESTRELITENEYHKLV 174


>gi|331699449|ref|YP_004335688.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190]
 gi|326954138|gb|AEA27835.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190]
          Length = 190

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 6/157 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+L   +RP+ + +  +  L+D+M E M +  G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIRIIGDPVLHAPTRPVVEFDDALRELVDDMFETMAAAHGVGLAANQIGVDLRVFV 60

Query: 61  IDLQDHAHRKNPM-VFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D   +     V +NP + T        D    +EGCLS+P  +    R+ +  V  
Sbjct: 61  YDCPDEVTKTMARGVVVNPVLETSEIPETMPDPEEDEEGCLSVPGEQFPTGRADWARVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +D + Q       G LA C QHE+DHL+G L+++ L+
Sbjct: 121 VDVDGQPVEAEGRGFLARCFQHEVDHLDGHLYVERLT 157


>gi|19553932|ref|NP_601934.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|62391575|ref|YP_226977.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|39931164|sp|Q8NM41|DEF2_CORGL RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21325511|dbj|BAC00133.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC
           13032]
 gi|41326917|emb|CAF20761.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032]
          Length = 193

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 9/163 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++ + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF-------SDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            D  D     +   FINP + T        +DD S  +EGCLS+P       R+ +  V 
Sbjct: 61  YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGS-DEEGCLSVPGEGFPTGRAHWAKVT 119

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
            ++   +   + A+G LA C QHE+ HL+G L+ D L  R KR
Sbjct: 120 GLNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKR 162


>gi|145296738|ref|YP_001139559.1| peptide deformylase [Corynebacterium glutamicum R]
 gi|140846658|dbj|BAF55657.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 193

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 9/163 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++ + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF-------SDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            D  D     +   FINP + T        +DD S  +EGCLS+P       R+ +  V 
Sbjct: 61  YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGS-DEEGCLSVPGEGFPTGRAHWAKVT 119

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
            ++   +   + A+G LA C QHE+ HL+G L+ D L  R KR
Sbjct: 120 GLNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKR 162


>gi|237796060|ref|YP_002863612.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|229262415|gb|ACQ53448.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 178

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 6/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D +L+RVSR +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           IDL++    + P++ INPK +     + S  +EGCLS P Y   V R   + +  ++   
Sbjct: 83  IDLRNG---QEPIIIINPKFLKKIGKEES--EEGCLSYPGYEGIVIRPRRVAITGLNEKG 137

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +     A GLL     HE DHL+GI++ID   ++
Sbjct: 138 EEVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKV 171


>gi|182701890|ref|ZP_02617367.2| peptide deformylase [Clostridium botulinum Bf]
 gi|182674086|gb|EDT86047.1| peptide deformylase [Clostridium botulinum Bf]
          Length = 178

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 6/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D +L+RVSR +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           IDL++    + P++ INPK +     + S  +EGCLS P Y   V R   + +  ++   
Sbjct: 83  IDLRNG---QEPIIIINPKFLKKIGKEES--EEGCLSYPGYEGIVIRPRRVAITGLNEKG 137

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +     A GLL     HE DHL+GI++ID   ++
Sbjct: 138 EEVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKV 171


>gi|323464693|gb|ADX76846.1| peptide deformylase 1 [Staphylococcus pseudintermedius ED99]
          Length = 161

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 4/141 (2%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           PILR+ + P+   ++ + +LI ++ + +Y  +G  LAA QIGV  R+ ++D++    +  
Sbjct: 11  PILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIVDME----QDG 66

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  INP++I  SD+ +   EGCLS+P    +V RS  ITVR  D N     + A   +A
Sbjct: 67  LLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNEVEMTAYDDIA 126

Query: 132 TCLQHELDHLNGILFIDHLSR 152
             + H +D+LNGILF+D + R
Sbjct: 127 RMILHVIDNLNGILFVDMMDR 147


>gi|157827157|ref|YP_001496221.1| polypeptide deformylase [Rickettsia bellii OSU 85-389]
 gi|157802461|gb|ABV79184.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389]
          Length = 187

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 16/161 (9%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH- 68
           P+ +LR  S P+  I+S + + + +MLE MY+ +GIG++A+Q+G   R +++D+    + 
Sbjct: 10  PNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALIVDIPKEEND 69

Query: 69  --RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR------ADVKRSAFITVRYMDCNAQ 120
             ++ P   INP++   S++  +  E C+SI           DV+R   I++ Y+D    
Sbjct: 70  QIKREPFFIINPEVNYLSEEKVILNEDCISIRKEDGIAFIIGDVERPKNISISYIDLEGN 129

Query: 121 HQIIYADG-------LLATCLQHELDHLNGILFIDHLSRLK 154
            + +  +G         + CLQHELDHL+GILFID L   K
Sbjct: 130 SKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRLYNAK 170


>gi|148380578|ref|YP_001255119.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|148290062|emb|CAL84181.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
          Length = 156

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 1   MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           IDL++    + P++ INPK   FS        +EGCLS P Y   V R   + +  ++  
Sbjct: 61  IDLRNG---QEPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEK 114

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +     A GLL     HE DHL+GI++ID   ++
Sbjct: 115 GEEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 149


>gi|167772294|ref|ZP_02444347.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM
           17241]
 gi|167665397|gb|EDS09527.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM
           17241]
          Length = 155

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 7/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D  LR+ SRP+   N  +  L+D+M E M    G+G+AA Q+GVL R VVID+ +  H  
Sbjct: 11  DERLRKKSRPVTDFNERLWTLLDDMYETM-KDGGVGIAAPQVGVLRRAVVIDVGEGKHE- 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                +NP I+  S D     EGCLSIP     V R A + ++  D   +   + A+G  
Sbjct: 69  ----LVNPVIVEQSGD-QCGGEGCLSIPGQYGLVHRPAQLRLKAQDRYGKPFELEAEGYF 123

Query: 131 ATCLQHELDHLNGILFIDHLSRL 153
           A  + HE+DHL+GILFID   R+
Sbjct: 124 AVAVCHEVDHLDGILFIDKAERM 146


>gi|134097125|ref|YP_001102786.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009658|ref|ZP_06567631.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909748|emb|CAL99860.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 191

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R +E  + ++  L+D+M E M +  G+GLAA QIGV  RL V
Sbjct: 1   MAVHPIRIVGDPVLHNPTRLVENFDDELRTLVDDMFETMAAASGVGLAANQIGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NP + T        D     EGCLS+P       R+ +  V   
Sbjct: 61  YDCPDDEGVQHRGVVVNPVLETTEVPESMPDPEEDWEGCLSVPGESFPTGRADWAKVTGS 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           D +     +   G  A CLQHE DHL+G L+   LSRL
Sbjct: 121 DVDGNPVEVEGTGFFARCLQHETDHLDGFLY---LSRL 155


>gi|189502648|ref|YP_001958365.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|238692315|sp|B3ETT4|DEF_AMOA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189498089|gb|ACE06636.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 188

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 14/175 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+V + + ILR+ + PIE + +D+  LI++M   M +  G+GLAA QIG   +L V+D+ 
Sbjct: 4   PIVPYGESILRQTAAPIE-LGTDLETLIESMFITMNAAKGLGLAAPQIGKSIQLFVVDVS 62

Query: 64  --------QDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   Q   HRK   V+INP +  +  +  + Y+EGCLSIP    DV R+  + +++
Sbjct: 63  PFVGDGMVQPDKHRK---VYINPVLEIYQPNTITHYEEGCLSIPGIYVDVPRNKRVRIKF 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D N Q Q      + A  +QHE DHL G L ID+L   +R  +  K+  + Q R
Sbjct: 120 FDRNWQAQEEDLVDMPARVVQHEYDHLYGKLHIDYLRADRRLRLKSKLENIKQGR 174


>gi|300855374|ref|YP_003780358.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300435489|gb|ADK15256.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 156

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 87/153 (56%), Gaps = 3/153 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ F D +LR+VSR ++ I+ + + ++ ++ + +Y++ G+GL+A QIG+L R++ 
Sbjct: 1   MAVREILKFGDKLLRKVSRKVKNIDEETLGIVQDLKDTLYASSGVGLSAPQIGILKRIIF 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL       +P+V INPKI+      +   EGCLS   +   V R   + V   D N  
Sbjct: 61  IDLG--KENTDPVVLINPKIVK-KMGRNEGPEGCLSYNGHEGIVVRPKKVIVVGEDINGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                A+GL A    HE+DHL+G+L+ D   ++
Sbjct: 118 EVRYNAEGLFARAFCHEIDHLDGVLYTDKAKKV 150


>gi|318060209|ref|ZP_07978932.1| peptide deformylase [Streptomyces sp. SA3_actG]
 gi|318079746|ref|ZP_07987078.1| peptide deformylase [Streptomyces sp. SA3_actF]
          Length = 210

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  +P+L +    + +   ++  L+D+M     + +G+GLAA Q+GV  ++ V D Q
Sbjct: 37  PITVVGNPVLHKECADVTEFGPELAKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDCQ 96

Query: 65  DHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D    ++  V  NPK+     +        EGCLS+P   A   R+ +  V   D +   
Sbjct: 97  DDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGNA 156

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +   G  A CLQHE DHL G L++D LS+  R    K+M++
Sbjct: 157 IKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199


>gi|302521840|ref|ZP_07274182.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|302430735|gb|EFL02551.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 210

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  +P+L +    + +   ++  L+D+M     + +G+GLAA Q+GV  ++ V D Q
Sbjct: 37  PITVVGNPVLHKECADVTEFGPELTKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDCQ 96

Query: 65  DHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D    ++  V  NPK+     +        EGCLS+P   A   R+ +  V   D +   
Sbjct: 97  DDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGNA 156

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +   G  A CLQHE DHL G L++D LS+  R    K+M++
Sbjct: 157 IKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199


>gi|319892209|ref|YP_004149084.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161905|gb|ADV05448.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
          Length = 161

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 4/141 (2%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           PILR+ + P+   ++ + +LI ++ + +Y  +G  LAA QIGV  R+ ++D++    +  
Sbjct: 11  PILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIVDME----QDG 66

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  INP++I  SD+ +   EGCLS+P    +V RS  ITVR  D N     + A   +A
Sbjct: 67  LLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNEVEMTAYDDIA 126

Query: 132 TCLQHELDHLNGILFIDHLSR 152
             + H +D+LNGILF+D + R
Sbjct: 127 RMILHVIDNLNGILFVDMIDR 147


>gi|153933577|ref|YP_001384865.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|153936131|ref|YP_001388335.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|152929621|gb|ABS35121.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|152932045|gb|ABS37544.1| peptide deformylase [Clostridium botulinum A str. Hall]
          Length = 178

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           IDL++    + P++ INPK   FS        +EGCLS P Y   V R   + +  ++  
Sbjct: 83  IDLRNG---QEPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEK 136

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +     A GLL     HE DHL+GI++ID   ++
Sbjct: 137 GEEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 171


>gi|89898499|ref|YP_515609.1| peptide deformylase [Chlamydophila felis Fe/C-56]
 gi|123722301|sp|Q253S4|DEF_CHLFF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|89331871|dbj|BAE81464.1| polypeptide deformylase [Chlamydophila felis Fe/C-56]
          Length = 186

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 6/157 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + L  +   ILRR +  I +I   I  L+ +M E M +  G+GLAA Q+G    L V+ +
Sbjct: 3   RELEYYGSHILRRKADIIPEITDTIRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVVCV 62

Query: 64  QDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +      +      P V+INP +   S+D  + +EGCLSIP  RADV R   ITV  ++ 
Sbjct: 63  EGETEDGDLIFCDFPKVYINPVLSNASEDLVIGREGCLSIPGLRADVYRPQSITVTALNL 122

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           + Q    + +G  A  + HE DHL+G+L+ID +   K
Sbjct: 123 DGQEFTEHLEGFPARIIMHENDHLHGVLYIDKMEEPK 159


>gi|261885374|ref|ZP_06009413.1| peptide deformylase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 153

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 83/135 (61%), Gaps = 4/135 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           ++ +PD  L   S  + K ++++   +D+M + M + +GIGLAA+Q+G   R+ +I+L  
Sbjct: 5   VITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFIINLIN 64

Query: 64  QDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +D    KN ++  INPK I+  D   VYQEGCLS+P Y  DVKR+  I +++ D     +
Sbjct: 65  EDEVQDKNDLLEIINPKFIS-KDGEIVYQEGCLSVPGYYEDVKRAKDIKIQFQDRFGNLK 123

Query: 123 IIYADGLLATCLQHE 137
            + ADGLL+  +QHE
Sbjct: 124 ELEADGLLSVAIQHE 138


>gi|302549859|ref|ZP_07302201.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302467477|gb|EFL30570.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 199

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL +  DP+L      +     ++  L++++   MY+  G+GLAA QIG   R+ V D 
Sbjct: 32  RPLTLHGDPVLHTPCAEVTDFGPELARLVEDLFATMYAAQGVGLAANQIGEPLRVFVFDC 91

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP+++          EGCLS+P   A  +R     V       +   
Sbjct: 92  PDDEDVRHLGHVVNPRLVETDGVVIRGPEGCLSLPGLEAGTERYDHAVVEGFTMTGEPVT 151

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           ++  G  A CLQHE DHL G ++ DHLS  +   + +++++    R
Sbjct: 152 LHGTGFFARCLQHEYDHLEGRIYADHLSGWRHRKLMRQVARASWCR 197


>gi|322806950|emb|CBZ04520.1| peptide deformylase [Clostridium botulinum H04402 065]
          Length = 178

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 8/145 (5%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +IDL++    +
Sbjct: 33  DKTLKRVSKKVECIDDEITGIIKDLKDTLYAVTGIGLAAPQIGYLKRIFIIDLRNG---Q 89

Query: 71  NPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            P++ INPK   FS        +EGCLS P Y   V R   + +  ++   +     A G
Sbjct: 90  EPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGEEVTYEATG 146

Query: 129 LLATCLQHELDHLNGILFIDHLSRL 153
           LL     HE DHL+GI++ID   ++
Sbjct: 147 LLKNAFCHEYDHLDGIVYIDKAKKV 171


>gi|328957297|ref|YP_004374683.1| peptide deformylase [Carnobacterium sp. 17-4]
 gi|328673621|gb|AEB29667.1| peptide deformylase [Carnobacterium sp. 17-4]
          Length = 176

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 87/146 (59%), Gaps = 4/146 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +P+ +L   ++ +E+I  +I+ L+++M + M + DGIG+AA Q+    RL ++++ 
Sbjct: 17  PILTYPNALLTTPTKEVEEITDEIIQLLEDMHDTMIANDGIGIAAPQVSSNLRLALVEID 76

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           + +        INP+I+  + + ++  EGCLS P+    +KR+  I +R+ D N     +
Sbjct: 77  EESGL---FEMINPQIVQSTGE-TIDVEGCLSFPEVYGTIKRADTIVLRFYDRNGDEFEV 132

Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150
            AD  LA   QHEL+HL+G LF D +
Sbjct: 133 EADDYLARAFQHELEHLDGKLFTDKI 158


>gi|153941088|ref|YP_001391920.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|170756373|ref|YP_001782237.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|152936984|gb|ABS42482.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|169121585|gb|ACA45421.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|295319940|gb|ADG00318.1| peptide deformylase [Clostridium botulinum F str. 230613]
          Length = 178

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           IDL++    + P++ INPK   FS        +EGCLS P Y   V R   + +  ++  
Sbjct: 83  IDLRNG---QEPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEK 136

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +     A GLL     HE DHL+GI++ID   ++
Sbjct: 137 GEEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 171


>gi|116328151|ref|YP_797871.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331396|ref|YP_801114.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|122280858|sp|Q04RW4|DEF_LEPBJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122284057|sp|Q051Q7|DEF_LEPBL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116120895|gb|ABJ78938.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125085|gb|ABJ76356.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 178

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 8/152 (5%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           D ILR+VS P+   E    +   LI +M + M   +G+GLAA QIG+L ++VV+  +D+ 
Sbjct: 11  DSILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNE 70

Query: 68  HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              +       V +NP I   + D S + EGCLS+P  R  V+R   I +++MD      
Sbjct: 71  RYPDTPNVPERVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKIRMQWMDEKGDRF 130

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
               DG  A   QHE DHL+GIL++D L   K
Sbjct: 131 DETIDGYKAVVYQHECDHLSGILYVDRLKDTK 162


>gi|229489380|ref|ZP_04383243.1| polypeptide deformylase [Rhodococcus erythropolis SK121]
 gi|229323477|gb|EEN89235.1| polypeptide deformylase [Rhodococcus erythropolis SK121]
          Length = 212

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 5/163 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P++ +  P+L   +RP+ +  SD+ +L+ +M     +  G GLAA QIGV   + + 
Sbjct: 35  TAQPIIRWGTPVLHTPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 94

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSV----YQEGCLSIPDYRADVKRSAFITVRYMDC 117
           D  D    +   V  NP ++   +        Y EGCLS+P    D+ R  F T R  D 
Sbjct: 95  DCTDEVGTQRTGVVCNP-VVDLPEGVDRQLVDYCEGCLSLPGAYTDLARPDFSTCRGNDQ 153

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                 I A G L  C QHE DH+NGI+F D L   KR  + +
Sbjct: 154 YGNPIEITAGGTLGRCFQHEADHINGIVFGDRLPTRKRKQLYR 196


>gi|153855354|ref|ZP_01996503.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814]
 gi|149752174|gb|EDM62105.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814]
          Length = 157

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           F D +L +  + + K+      LI++ML+ MY   G+GLAA Q+G+L R+VVID+ +   
Sbjct: 9   FGDEVLNKECKEVTKMTLRTKVLINDMLDTMYEAMGVGLAAPQVGILKRIVVIDIGE--- 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+V INP I+  S +    +EGCLS+P     V R  +  V+ ++ + +  I+  +G
Sbjct: 66  --GPIVLINPVILETSGE-QTGEEGCLSLPGKAGIVTRPNYAKVKALNEDMEEVILEGEG 122

Query: 129 LLATCLQHELDHLNGILF 146
           LLA    HE+DHL+G L+
Sbjct: 123 LLARAFCHEIDHLDGKLY 140


>gi|307244489|ref|ZP_07526598.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678]
 gi|306492182|gb|EFM64226.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678]
          Length = 151

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   +P+L + S+ +   N  +  L+D+M + MY  DG+GLAA Q+GVL R VV
Sbjct: 1   MAIRNILKMGEPLLNKKSKQVVDFNDRLHTLLDDMADTMYKEDGVGLAAPQVGVLRRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +       +  INP I+  S +     EGCLS+ DY  +V R  ++ V+  D   +
Sbjct: 61  VDIGE-----GLIELINPVIVETSGE-QTDLEGCLSVVDYIGEVTRPNYVKVKAQDRFGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              +  +G LA    HE+DHL GILF++ +   ++
Sbjct: 115 DIEVEGEGFLARAFCHEIDHLEGILFVERVEDTEK 149


>gi|255348717|ref|ZP_05380724.1| peptide deformylase [Chlamydia trachomatis 70]
 gi|255503257|ref|ZP_05381647.1| peptide deformylase [Chlamydia trachomatis 70s]
 gi|289525394|emb|CBJ14871.1| peptide deformylase [Chlamydia trachomatis Sweden2]
 gi|296434946|gb|ADH17124.1| peptide deformylase [Chlamydia trachomatis E/150]
 gi|296438666|gb|ADH20819.1| peptide deformylase [Chlamydia trachomatis E/11023]
          Length = 181

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 6/152 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           L  +  PIL +V+ P+ +I  ++  L+ +M E M    G+GLAA Q+G    L ++ ++ 
Sbjct: 5   LEYYDSPILHKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIMGVER 64

Query: 66  HAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                       P VFINP I   S+      EGCLSIP  R +V R   ITV   + + 
Sbjct: 65  ELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAKNLDG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Q   +  +G LA  + HE DHL+G+L+ID +S
Sbjct: 125 QQFSLALEGFLARIVMHETDHLHGVLYIDRMS 156


>gi|154509144|ref|ZP_02044786.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798778|gb|EDN81198.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC
           17982]
          Length = 163

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I  ++  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NP+I+  SDD +    EGCLS+P+     +R+ +      D + 
Sbjct: 61  WNIDGEIG-----YVLNPRIVALSDDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +  ++  + L+A C+QHE DHL+G ++ID L R  R
Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRATR 151


>gi|117928486|ref|YP_873037.1| peptide deformylase [Acidothermus cellulolyticus 11B]
 gi|158512367|sp|A0LUE1|DEF_ACIC1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|117648949|gb|ABK53051.1| peptide deformylase [Acidothermus cellulolyticus 11B]
          Length = 180

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  LI +++E M    G+GLAA QIGV  R+ V
Sbjct: 1   MAVRPIRLFGDPVLRTPAEPVTDFDKELRVLIKDLIETMQDAPGVGLAAPQIGVSLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+            +NP  +  S++     EGCLS+P     +KR+     +  +   +
Sbjct: 61  YDVDGVVGH-----LVNPS-LDLSEEQQDGDEGCLSLPGLSYPLKRAKRAVAKGFNEFGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I+    LLA C+QHE DHL+G+LFID L   +R +  + + +
Sbjct: 115 PVILEGSDLLARCVQHETDHLDGVLFIDRLDPEQRKLAMRAIRE 158


>gi|328884922|emb|CCA58161.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712]
          Length = 210

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V D 
Sbjct: 36  RPITVVGNPVLHKECKDVTEFDDSLAALIDDMFASQKAAEGVGLAANQIGVDLKVFVYDC 95

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D    ++  V +NP +     +  V     EGCLS+P   A++ R  +  V   D    
Sbjct: 96  PDDEGVRHTGVVVNPVLQELPAELRVLDESNEGCLSVPTAYAELARPDYAEVHGQDAQGN 155

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G  A CLQHE DHL G L+ID LS+  R    ++M +
Sbjct: 156 PIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 199


>gi|312898702|ref|ZP_07758092.1| peptide deformylase [Megasphaera micronuciformis F0359]
 gi|310620621|gb|EFQ04191.1| peptide deformylase [Megasphaera micronuciformis F0359]
          Length = 176

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 7/145 (4%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           P+L++ + P++ I   +  L+D+M E MYS +G+GLAA Q+    ++VV+D        N
Sbjct: 34  PVLKKTAAPVKTITKRVKRLLDDMAETMYSAEGVGLAAPQVNESLQIVVLD------DGN 87

Query: 72  PMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            ++  INP+I+  S++     EGCLS+P    DV R   I V+  +   +  I   +G L
Sbjct: 88  GLIELINPEILDVSEETEYGPEGCLSVPGIYGDVSRYTKIKVQAKNRFGKTVIYEPEGFL 147

Query: 131 ATCLQHELDHLNGILFIDHLSRLKR 155
           A   QHE+DHL G LF +    L++
Sbjct: 148 ARIFQHEMDHLKGHLFTEKAVNLRK 172


>gi|184157242|ref|YP_001845581.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
 gi|332872902|ref|ZP_08440866.1| peptide deformylase [Acinetobacter baumannii 6014059]
 gi|183208836|gb|ACC56234.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
 gi|193076693|gb|ABO11393.2| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978]
 gi|322507127|gb|ADX02581.1| Peptide deformylase 2 [Acinetobacter baumannii 1656-2]
 gi|323517106|gb|ADX91487.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332738913|gb|EGJ69776.1| peptide deformylase [Acinetobacter baumannii 6014059]
          Length = 160

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 87/147 (59%), Gaps = 8/147 (5%)

Query: 13  ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R++++  + +   
Sbjct: 14  ILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRIIIVASRPNPRY 73

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + V+Y+    +    
Sbjct: 74  PDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVET 133

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
              G  A  +QHE+DHLNGILF++ +S
Sbjct: 134 IFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|56416555|ref|YP_153629.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries]
 gi|222474923|ref|YP_002563338.1| Peptide deformylase [Anaplasma marginale str. Florida]
 gi|56387787|gb|AAV86374.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries]
 gi|222419059|gb|ACM49082.1| Peptide deformylase [Anaplasma marginale str. Florida]
          Length = 196

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 16/152 (10%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------Q 64
           +L+  S PIEK++ +++ L+D M +V+ ++  +G +A+Q+GV  R+  I++        Q
Sbjct: 15  VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 74

Query: 65  D-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116
           D       H+   N +V +NP+I++FS +  V  EGCLS   Y    + R   + ++Y D
Sbjct: 75  DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 134

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID 148
                 +I A   LA C+QHE+DHLNG+L  +
Sbjct: 135 LMGNECVIRAYNWLARCIQHEMDHLNGVLLAN 166


>gi|254994774|ref|ZP_05276964.1| Peptide deformylase [Anaplasma marginale str. Mississippi]
 gi|255002896|ref|ZP_05277860.1| Peptide deformylase [Anaplasma marginale str. Puerto Rico]
 gi|255004027|ref|ZP_05278828.1| Peptide deformylase [Anaplasma marginale str. Virginia]
          Length = 195

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 16/152 (10%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------Q 64
           +L+  S PIEK++ +++ L+D M +V+ ++  +G +A+Q+GV  R+  I++        Q
Sbjct: 14  VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 73

Query: 65  D-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116
           D       H+   N +V +NP+I++FS +  V  EGCLS   Y    + R   + ++Y D
Sbjct: 74  DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 133

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID 148
                 +I A   LA C+QHE+DHLNG+L  +
Sbjct: 134 LMGNECVIRAYNWLARCIQHEMDHLNGVLLAN 165


>gi|88606874|ref|YP_505573.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ]
 gi|88597937|gb|ABD43407.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ]
          Length = 197

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 16/158 (10%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------- 63
           +L  VS P+E ++S    +++ M+++    D +GL+AVQ+G   R+ VID+         
Sbjct: 14  VLHTVSSPLESVDSATREIVNEMIKIAERGDTVGLSAVQLGYPIRVFVIDMFSGLFNITE 73

Query: 64  ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116
                   H+H    +V INP+I++FS +     EGCLS+  Y    ++R   + ++Y D
Sbjct: 74  DLKVISGHHSHNTRSLVCINPQIVSFSGETVTLFEGCLSVKSYGMVGIQRPGNVDLKYTD 133

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                 +I     LA C+QHE+DHLNG+L  + L  +K
Sbjct: 134 LAGNVCVIRTFNWLARCVQHEMDHLNGVLLANMLDNIK 171


>gi|169796843|ref|YP_001714636.1| peptide deformylase 2 [Acinetobacter baumannii AYE]
 gi|213156766|ref|YP_002318427.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|215484319|ref|YP_002326548.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|301345256|ref|ZP_07225997.1| peptide deformylase [Acinetobacter baumannii AB056]
 gi|301510240|ref|ZP_07235477.1| peptide deformylase [Acinetobacter baumannii AB058]
 gi|301594430|ref|ZP_07239438.1| peptide deformylase [Acinetobacter baumannii AB059]
 gi|332854474|ref|ZP_08435381.1| peptide deformylase [Acinetobacter baumannii 6013150]
 gi|332870910|ref|ZP_08439542.1| peptide deformylase [Acinetobacter baumannii 6013113]
 gi|169149770|emb|CAM87661.1| peptide deformylase 2 [Acinetobacter baumannii AYE]
 gi|213055926|gb|ACJ40828.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|213986720|gb|ACJ57019.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|332727962|gb|EGJ59355.1| peptide deformylase [Acinetobacter baumannii 6013150]
 gi|332731873|gb|EGJ63152.1| peptide deformylase [Acinetobacter baumannii 6013113]
          Length = 160

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 87/147 (59%), Gaps = 8/147 (5%)

Query: 13  ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R++++  + +   
Sbjct: 14  ILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRVIIVASRPNPRY 73

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + V+Y+    +    
Sbjct: 74  PDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVET 133

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
              G  A  +QHE+DHLNGILF++ +S
Sbjct: 134 IFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|315651132|ref|ZP_07904164.1| peptide deformylase [Eubacterium saburreum DSM 3986]
 gi|315486597|gb|EFU76947.1| peptide deformylase [Eubacterium saburreum DSM 3986]
          Length = 174

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 7/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L +  + ++++N     LI++M+E M    G+GLAA QIGVL R+VV
Sbjct: 9   MAIRAIRVMGDNVLNKKCKEVKEVNDRTKILIEDMIETMREAGGVGLAAPQIGVLKRIVV 68

Query: 61  IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           I+ + D+ H     V INP II   D   V  EGCLS+P     VKR  ++  +  D + 
Sbjct: 69  IETEPDNVH-----VLINPVIIK-QDGEQVGYEGCLSVPGKSGIVKRPNYVAAKAFDIDM 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
               I  +GLLA  + HE  HL+G L++D
Sbjct: 123 NEYTIEGEGLLARAICHECAHLDGELYVD 151


>gi|302387077|ref|YP_003822899.1| peptide deformylase [Clostridium saccharolyticum WM1]
 gi|302197705|gb|ADL05276.1| peptide deformylase [Clostridium saccharolyticum WM1]
          Length = 163

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 83/140 (59%), Gaps = 6/140 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           + ILR+ ++ +E I++ ++ L+++M + MY  +G+GLAA Q+GVL RLVVID+       
Sbjct: 13  NTILRKQAKKVENIDNKVLTLLEDMADTMYQEEGVGLAAPQVGVLKRLVVIDIG-----A 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+  S       EGCLS+P    +V R   + ++  +    +  +    LL
Sbjct: 68  GLIKLINPEIMEQSGQQQGM-EGCLSVPGISGEVVRPQKVRIKAQNETGAYFELEGTDLL 126

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A  + HE+DHLNG+LFID +
Sbjct: 127 ARAICHEIDHLNGVLFIDKI 146


>gi|153875918|ref|ZP_02003500.1| Polypeptide deformylase [Beggiatoa sp. PS]
 gi|152067618|gb|EDN66500.1| Polypeptide deformylase [Beggiatoa sp. PS]
          Length = 174

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 12/163 (7%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID-- 62
           L+I+PD  L++VS  +   +  +   + ++ E M +  G +G+AA Q+G   R+V+ID  
Sbjct: 6   LLIYPDVRLKQVSASVRVFDEKLHAFLTDLEETMRAGLGSVGIAAPQVGYFERIVIIDVS 65

Query: 63  ----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
               ++ H H    ++ +NP+I  +   F V +EGC+S+PDY  +V R+  I +  +D N
Sbjct: 66  SKPKIKHHGH----LILVNPEITQWKG-FEVGREGCMSVPDYTGNVIRAKKIHLMALDEN 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              Q    +G  A  +QHE+DHL+G+LF+D L   + D+  ++
Sbjct: 121 GVQQEYDMEGYEARAVQHEIDHLDGLLFLDRLVSRRYDLFQRR 163


>gi|226510000|ref|NP_001140879.1| hypothetical protein LOC100272955 [Zea mays]
 gi|194701558|gb|ACF84863.1| unknown [Zea mays]
          Length = 256

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 17/167 (10%)

Query: 1   MVKKPLVIFPDPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           MV    V   DP+L   ++   P + ++  +  +ID M++VM    G+GLAA QIGV  R
Sbjct: 65  MVTPGTVKAGDPVLHEPAQEVAPGDVLSEKVQGVIDRMVDVMRRAPGVGLAAPQIGVPLR 124

Query: 58  LVVI-DLQDH----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           ++V+ D Q++          A  + P   +V INPKI + S   +++ EGCLS+  YRA 
Sbjct: 125 IIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKIKSTSKRTALFFEGCLSVDGYRAV 184

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           V+R   + V  +D N     + A G  A  LQHE DHL G L++D +
Sbjct: 185 VERHLDVEVSGLDRNGSTMKVRASGWQARILQHECDHLEGTLYVDKM 231


>gi|239929017|ref|ZP_04685970.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291437357|ref|ZP_06576747.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291340252|gb|EFE67208.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
          Length = 216

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  R + + + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECRDVTEFDDELRKLVDDMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    +        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPELVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEW 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKEALRQMAE 205


>gi|293608925|ref|ZP_06691228.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829498|gb|EFF87860.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 160

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 87/147 (59%), Gaps = 8/147 (5%)

Query: 13  ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R++++  + +   
Sbjct: 14  ILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRVIIVASRPNLRY 73

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A     +V +NP+I+ FSD+  + +EGCLS+PD R  V+R+  + V+Y+    +    
Sbjct: 74  PDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVKVKYLTLQGETVET 133

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
              G  A  +QHE+DHLNGILF++ +S
Sbjct: 134 IFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|269959028|ref|YP_003328817.1| putative polypeptide deformylase [Anaplasma centrale str. Israel]
 gi|269848859|gb|ACZ49503.1| putative polypeptide deformylase [Anaplasma centrale str. Israel]
          Length = 195

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 16/152 (10%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------Q 64
           +L+  S P+EK++ +I  L+D M +V+ ++  +G +A+Q+GV  R+  I++        Q
Sbjct: 14  VLQTKSSPVEKVDDEIFELVDRMAKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 73

Query: 65  D-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116
           D       H+   N +V +NP+I++FS +  V  EGCLS   Y    + R   + ++Y D
Sbjct: 74  DIKVLSGYHSLSGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 133

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID 148
                 +I A   LA C+QHELDHLNG+L  +
Sbjct: 134 LMGNECVIRAYNWLARCIQHELDHLNGVLLAN 165


>gi|210617214|ref|ZP_03291458.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787]
 gi|210149415|gb|EEA80424.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787]
          Length = 161

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 83/141 (58%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +V + +  +      LI++ML+ MY   G+GLAA Q+G+L R+VVID+ +     
Sbjct: 11  DDVLEKVCKEVTDMTDRTKVLIEDMLDTMYDAMGVGLAAPQVGILKRIVVIDIGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P++ +NP+I+  + +    +EGCLS+P     V R  ++ V+ ++   +  +   +GLL
Sbjct: 66  GPIILVNPEILETAGE-QTGEEGCLSLPGKSGTVTRPNYVKVKALNEEMEEVVYEGEGLL 124

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A    HE+DHL+G L+++ + 
Sbjct: 125 ARAFCHEIDHLDGHLYVEKVE 145


>gi|284989160|ref|YP_003407714.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
 gi|284062405|gb|ADB73343.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
          Length = 185

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 7/174 (4%)

Query: 2   VKKPLVIF-PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           V +P+V +  +P+L R   P+     D+  L+ +M   M + DG+GLAA QIGV  R+ V
Sbjct: 10  VARPIVTYGSNPVLHRPCAPVTAFGKDLRRLVLDMFASMEAADGVGLAANQIGVDARVFV 69

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFS-----VYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID  D          +NP++             V  EGCLS+P   A++ R+    V  +
Sbjct: 70  IDCPDADGEDVVGYVVNPELTVLEPREGEPAEEVTDEGCLSVPGPYAELPRAFRARVDGV 129

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168
           D +     I A G+ A CLQHE+DHL+G +++D L   L+  ++ +    + +L
Sbjct: 130 DADGAPVSIEATGMAARCLQHEVDHLDGTVYVDRLPGDLRERLLAEAAGPVGEL 183


>gi|126348457|emb|CAJ90180.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC
           23877]
          Length = 240

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL I  DP+L      +     ++  L++++   MY+  G+GLAA QIG   R+ V D 
Sbjct: 53  RPLRILGDPVLHAPCEEVTDFGPELAALVEDLFATMYAAHGVGLAANQIGEPVRVFVYDC 112

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP+++          EGCLS+P   A  +R     V       +   
Sbjct: 113 PDDEDERHLGHVVNPRLVETGGVVVRGAEGCLSLPGLEAGTERHDEAVVTGFTVTGEPVT 172

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   G  A CLQHE DHL G +++D L+  +R  + ++ ++
Sbjct: 173 VRGTGFFARCLQHECDHLEGGIYVDRLTGWRRRKVLRRAAR 213


>gi|284042341|ref|YP_003392681.1| peptide deformylase [Conexibacter woesei DSM 14684]
 gi|283946562|gb|ADB49306.1| peptide deformylase [Conexibacter woesei DSM 14684]
          Length = 190

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 86/148 (58%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           ++ DP+LR  +RP+E+ +  + +LI  +  V+    G GLAA Q+GVL R+VV  + D  
Sbjct: 25  LWGDPVLRASARPVERFDDGLADLITRLRWVIDDATGAGLAAPQLGVLVRVVVYRVPDEE 84

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                 V +NP I+  S + + + EGCLS+P   A V+R A + V   D + + + I A 
Sbjct: 85  RDGPARVLVNPAIVVRSAERTTFVEGCLSMPGIVAPVERCANVVVHACDEHGRAREIAAA 144

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKR 155
           G  A+ LQHELDHL+G+L  D L+   R
Sbjct: 145 GDHASVLQHELDHLDGVLLPDRLTPEHR 172


>gi|293189859|ref|ZP_06608573.1| peptide deformylase [Actinomyces odontolyticus F0309]
 gi|292821274|gb|EFF80219.1| peptide deformylase [Actinomyces odontolyticus F0309]
          Length = 163

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I  ++  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NP+I+  S+D +    EGCLS+P+     +R+ +      D +A
Sbjct: 61  WNIDGEIG-----YVLNPRIVALSEDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDA 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +  ++  + L+A C+QHE DHL+G ++ID L R  R
Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRATR 151


>gi|330444327|ref|YP_004377313.1| peptide deformylase [Chlamydophila pecorum E58]
 gi|328807437|gb|AEB41610.1| peptide deformylase [Chlamydophila pecorum E58]
          Length = 186

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 6/153 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           L  +  P+LR  ++ I +I  DI +L+ +M E M +  G+GLAA QIG    L V+ ++ 
Sbjct: 5   LEYYGSPVLREKAKEITEITEDIRSLVQDMYETMIAHKGVGLAAPQIGKSLSLFVMCVEG 64

Query: 66  HAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                       P VFINP + + S+   +  EGCLSIP  R +V R   +TV  M+ + 
Sbjct: 65  ETPDGELIFCDFPKVFINPVLSSPSEHLVIAYEGCLSIPGLRGEVFRPDRVTVTAMNLDG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Q      +G  A  + HE DHL+GIL+ID +  
Sbjct: 125 QKFSETLEGFPARIVMHETDHLHGILYIDRMEE 157


>gi|23010332|ref|ZP_00051057.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 164

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   PDP+LR     I  I+  + +L+ +++E +      GLAA QIGV  R   
Sbjct: 4   MAMREIRTIPDPVLRTPCDEITTIDDRVRSLVADLVETVDHEGRAGLAANQIGVNLRAFS 63

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D          +NP+I+  SDD+    EGCLS+PD     +R+ +  V   D +  
Sbjct: 64  WNIDDEIG-----YVLNPRIVELSDDYQDGDEGCLSVPDLWYPTRRAWYARVVGTDLDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++    L+A CLQH+ DHL+G+L++D L R  R    +++ +
Sbjct: 119 EVVVEGTELMARCLQHKCDHLDGMLYLDRLDRSVRKKAMRELRE 162


>gi|260551188|ref|ZP_05825391.1| peptide deformylase 2 [Acinetobacter sp. RUH2624]
 gi|260405793|gb|EEW99282.1| peptide deformylase 2 [Acinetobacter sp. RUH2624]
          Length = 160

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 88/152 (57%), Gaps = 18/152 (11%)

Query: 13  ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R++++     A R
Sbjct: 14  ILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRVIIV-----ASR 68

Query: 70  KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            NP          +V +NP+I+ FS++  + +EGCLS+PD R  V+R+  + V+Y+    
Sbjct: 69  PNPRYPDAPEMDAVVMVNPEILEFSNEVCLGEEGCLSVPDERGQVERAEMVKVKYLTLQG 128

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 129 ETIESVFHGFPARIVQHEIDHLNGILFVERIS 160


>gi|239503010|ref|ZP_04662320.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB900]
          Length = 160

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 86/147 (58%), Gaps = 8/147 (5%)

Query: 13  ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           IL+  + P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R++++  + +   
Sbjct: 14  ILKLTAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRIIIVASRPNPRY 73

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + V+Y+    +    
Sbjct: 74  PDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVET 133

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
              G  A  +QHE+DHLNGILF++ +S
Sbjct: 134 IFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|226950032|ref|YP_002805123.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|226843262|gb|ACO85928.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
          Length = 178

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 8/155 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+  I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDGITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           IDL++    + P++ INPK   FS        +EGCLS P Y   V R   + +  ++  
Sbjct: 83  IDLRNG---QEPIILINPK---FSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEK 136

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +     A GLL     HE DHL+GI++ID   ++
Sbjct: 137 GEEVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKV 171


>gi|205373320|ref|ZP_03226124.1| peptide deformylase [Bacillus coahuilensis m4-4]
          Length = 161

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 4/148 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V  P+ +L +  + +   +  +  L+DNM + M   DG+GLAA QIG    + ++D+ 
Sbjct: 5   PIVFHPNEVLEKECKRVTIFDKKLRKLLDNMYDTMIEADGVGLAAPQIGQDISVAIVDIG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D +     +  +NP+I+  ++      EGCLS P+    + R A++ V+  D   +   I
Sbjct: 65  DDS---GIIELVNPEILE-TNGIETDIEGCLSFPNLYGTLTRPAYVKVKAQDRKGKAYTI 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
            A+G LA  +QHE+DHL+G+LF   + R
Sbjct: 121 EAEGFLARAIQHEIDHLHGVLFTSKVER 148


>gi|320096237|ref|ZP_08027821.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976818|gb|EFW08577.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 163

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  P+ ++   +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPVTEVTDSVRTLVEDLLEGVDMEGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NP I+  S+D +    EGCLSIP+     KR+ +      D + 
Sbjct: 61  YNIDGQIG-----YVLNPTIVELSEDEYQDGDEGCLSIPELWYPTKRAWYARCEGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +  ++  + L+A C+QHE+DHLNG L+ID L R  R
Sbjct: 116 RPVVLEGEELMARCIQHEVDHLNGHLYIDRLERKVR 151


>gi|159037484|ref|YP_001536737.1| peptide deformylase [Salinispora arenicola CNS-205]
 gi|157916319|gb|ABV97746.1| peptide deformylase [Salinispora arenicola CNS-205]
          Length = 186

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  L+ ++ + M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLTDTMREQNGAGLAAPQLGVGLRVFA 60

Query: 61  IDLQDH-AHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D+ D   H  NP       ++ F D +     EGCLS+P    D KR   +  R  + +
Sbjct: 61  FDVDDVIGHLVNP-------VLEFPDVEEQDGPEGCLSLPGLYFDTKRRQNVVARGFNGH 113

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                I   GL+A C+QHE DHL+G+LFID L    R    K + +
Sbjct: 114 GDPVQIVGTGLMARCVQHETDHLDGVLFIDRLDAAGRKEAMKAIRQ 159


>gi|296140267|ref|YP_003647510.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
 gi|296028401|gb|ADG79171.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
          Length = 180

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+PDP+LR  +  +   ++D+  L+D+M++ M+  +G GLAA Q+GV  R+ V    
Sbjct: 5   PIRIYPDPVLRTRADEVTVFDADLARLVDDMIDTMHHHNGAGLAAPQVGVSKRVFVFGCG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                      INP      D+     EGCLSIP+      R   +    +D + +   I
Sbjct: 65  GREGH-----IINPVWRAVGDETQTGPEGCLSIPEILEPCTRHLNVVAEGVDVHGESLAI 119

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               +LA C+QHE DHL+G+LF+  L    R    K +       D
Sbjct: 120 EGTEILARCIQHETDHLDGVLFLSRLEPEDRKRAMKAIRSAPWFTD 165


>gi|311113846|ref|YP_003985068.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
 gi|310945340|gb|ADP41634.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
          Length = 190

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 76/140 (54%), Gaps = 5/140 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR    PI   + ++  LID+ML+ MY  +G+GLA  QIG+  ++      D     
Sbjct: 11  DPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFTFGGIDGRE-- 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                INP + T ++      EGCLS+P  ++D  R  +  VR +D   +  ++  +GL 
Sbjct: 69  --GYIINPVLETGTEP-QEGGEGCLSVPGIKSDTPRMNWARVRGVDKTGKPLVLEGEGLF 125

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A  LQHE DHL+G LFID L
Sbjct: 126 ARMLQHETDHLHGKLFIDRL 145


>gi|188996826|ref|YP_001931077.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931893|gb|ACD66523.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 169

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M K  ++ +PD  L+R S  +     +    I+ +   MY S  G+G+AA Q+    R +
Sbjct: 1   MEKLEILKYPDERLKRKSIEVVDFGKEFKEFIEKLTYTMYNSPGGVGIAAPQVNNPIRTI 60

Query: 60  VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++D     H+ N      MV  NPKI+    +  +++EGC+S+PDY  +VKR  +I V  
Sbjct: 61  IVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEI-IFREGCMSVPDYTGNVKRFYYIKVEA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            D N        +G  A  +QHE+DHL G +FI+ +   K D+  +K+ K
Sbjct: 120 QDINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKVYK 168


>gi|29833668|ref|NP_828302.1| polypeptide deformylase [Streptomyces avermitilis MA-4680]
 gi|39931074|sp|Q826Q0|DEF2_STRAW RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|29610792|dbj|BAC74837.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
          Length = 186

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 81/161 (50%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL +  DP+L      +     ++  L+++M   MY+ +G+GLAA QIGV  R+ V D 
Sbjct: 14  RPLALLGDPVLHAPCEEVTDHGPELARLVEDMFATMYAANGVGLAANQIGVPLRVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP++I          EGCLS+P   A  +R     V     + +   
Sbjct: 74  PDDEDVRHVGHVVNPRLIEADGVVLRGPEGCLSLPGLEAGTERYDRAVVEGFTTDGEPVR 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   G  A CLQHE DHL+G +++D +S  +   + ++ ++
Sbjct: 134 VLGTGWFARCLQHECDHLDGGVYVDRVSGWRHRRVMRQAAR 174


>gi|152964372|ref|YP_001360156.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
 gi|151358889|gb|ABS01892.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
          Length = 200

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 13/167 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           V  P+  +  P+L R + P+   + D++ L+ +M   M + DG+GLAA QIGV  R+ V+
Sbjct: 24  VVHPITRYFTPVLHRPTTPVTSFDEDLVQLVADMFASMDAADGVGLAANQIGVDARVFVV 83

Query: 62  DLQDH----------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           D  D           AH  NP++ +            +  EGCLS+P   AD+ R    T
Sbjct: 84  DCPDDDTERTGENVVAHVVNPVLELP---TGRRRRLDLDGEGCLSVPGEYADLARPDKAT 140

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           V   D +     I   GLLA CLQHE DHL+G++++D L   +R  I
Sbjct: 141 VTGKDVHGNPVKIVGTGLLARCLQHESDHLDGVVYVDRLPAEQRAEI 187


>gi|296331148|ref|ZP_06873622.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674303|ref|YP_003865975.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151792|gb|EFG92667.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412547|gb|ADM37666.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 160

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R+ V
Sbjct: 1   MAVKKVVTHPAEVLETPTESVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D++ R +    +NP+I+  S +     EGCLS P    DV R+ ++ VR  +   +
Sbjct: 61  VDIGDNSGRID---LVNPEILEKSGE-QTGIEGCLSFPGVYGDVTRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|209965357|ref|YP_002298272.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
 gi|209958823|gb|ACI99459.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
          Length = 186

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 8/159 (5%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAHR 69
           P+LRR ++P+E  I + +     +M+E M    GIGLAA Q+ V +R+VV  +  D A  
Sbjct: 12  PVLRRPAQPVETPIPAVVRQFALDMIETMVDAPGIGLAAPQVHVGWRIVVFRVPGDRATG 71

Query: 70  K------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P V +NP     S++     EGCLSIP  R  V R A I  R +  +     
Sbjct: 72  GAGDLPMEPQVLVNPAYEPLSEEMVEGWEGCLSIPGLRGVVPRFARIRYRGLSLDGTAVE 131

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             A G  A  +QHE+DHL+GIL+ID +  L R   T++M
Sbjct: 132 REASGTHARVVQHEIDHLDGILYIDRMPDLTRLTFTEEM 170


>gi|145594411|ref|YP_001158708.1| peptide deformylase [Salinispora tropica CNB-440]
 gi|145303748|gb|ABP54330.1| peptide deformylase [Salinispora tropica CNB-440]
          Length = 186

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  L+ ++++ M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLIDTMREQNGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDH-AHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D+ D   H  NP       ++ F D +     EGCLS+P    D KR   +  +  +  
Sbjct: 61  FDVDDVVGHLVNP-------VLEFPDAEEQDGPEGCLSLPGLYFDTKRRQNVVAKGFNGY 113

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                I   GL+A C+QHE DHL+G+LFID L    R    K++ +
Sbjct: 114 GDPMQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKEIRR 159


>gi|320333260|ref|YP_004169971.1| peptide deformylase [Deinococcus maricopensis DSM 21211]
 gi|319754549|gb|ADV66306.1| Peptide deformylase [Deinococcus maricopensis DSM 21211]
          Length = 214

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 27/171 (15%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM----------NLIDNMLEVMYSTDGIGLAAVQIGV 54
           P+ ++ DPILR+ +R IE + + +            +   MLE MY   G+GLAA Q+G+
Sbjct: 11  PIRLYGDPILRKKARAIEDLQAPLTIPGFAPAALAQVARTMLETMYDAHGVGLAAPQVGL 70

Query: 55  LYRLVVI----DLQDHAHRKNPM--------VFINP--KIITFSDDFSVYQEGCLSIPD- 99
             R+ V     D +D    + P+        V INP  +++    D S YQEGCLSIP  
Sbjct: 71  GVRMFVAAEYADDEDEGQ-ETPLRSRVLREFVAINPVLEVLNKKKD-SHYQEGCLSIPGI 128

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Y   VKR   + + Y++ + Q +++ A+  LA   QHE+DHL+G  F+D L
Sbjct: 129 YEEGVKRDRAVRMTYLNLDGQRKVVEAEDYLARVFQHEVDHLDGRFFLDRL 179


>gi|294631322|ref|ZP_06709882.1| peptide deformylase [Streptomyces sp. e14]
 gi|292834655|gb|EFF93004.1| peptide deformylase [Streptomyces sp. e14]
          Length = 216

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + +   ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  ASRPITVVGNPVLHKECKDVTEFGEELQQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCMDDEGVRHVGVVCNPKLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDER 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNAIKVRGTGYFARCLQHETDHLYGQLYIDRLSKRERKDALRQMAE 205


>gi|39930960|sp|Q7NJV3|DEF1_GLOVI RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
          Length = 227

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH 66
           DP+LR  ++P+  ++I S+ I  LI  M E M    G+GLAA Q+GV  +LVVI D  ++
Sbjct: 53  DPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIEDRPEY 112

Query: 67  AHR----------KNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             R          + P+ F   INP +    ++ +V+ EGCLSIP Y+  V R+  + V 
Sbjct: 113 IERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARARVVRVE 172

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D  A   +I A G  A  LQHE+DHLNG+L +D +
Sbjct: 173 ALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRM 209


>gi|108759554|ref|YP_631592.1| peptide deformylase [Myxococcus xanthus DK 1622]
 gi|108463434|gb|ABF88619.1| peptide deformylase [Myxococcus xanthus DK 1622]
          Length = 201

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 17/158 (10%)

Query: 11  DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+LRR +R   P E  + +   LI+ M + M    G+GLAA Q+GV  R+VVI+     
Sbjct: 10  DPVLRRKARDLTPEEIASPETARLIEQMRDTMRDAPGVGLAAPQVGVGLRVVVIEDRPEY 69

Query: 63  ------LQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                  +  A  + P+ F   INP+++      + + EGCLS+  + A V R+  + V 
Sbjct: 70  QAGLSESERAARGRKPVPFHVLINPRLVVEDAAPAEFHEGCLSVSGFAALVPRACAVRVD 129

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +D + Q   + A G  A  LQHELDHL+G L++D + 
Sbjct: 130 ALDEHGQPVTVQARGWYARILQHELDHLDGTLYVDRME 167


>gi|320008651|gb|ADW03501.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331]
          Length = 212

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +    + +   ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECSDVTEFGDELAQLIDDMFASQRTAEGVGLAANQIGVDRKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++     NP +   + +        EGCLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGVRHVGAICNPVLEELAPERRNLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    K+M++
Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMAE 201


>gi|218507890|ref|ZP_03505768.1| peptide deformylase [Rhizobium etli Brasil 5]
          Length = 155

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 3/155 (1%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           P P L+ V  P+   ++ +  L D++L  M +  G+G+ A  IGV  R++V++L D A  
Sbjct: 1   PHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMVLEL-DRA-- 57

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               +++NP I   S +  ++ EG +S+P    D+ R   I  RY D + +     A+  
Sbjct: 58  DGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDITRPRAIRFRYQDVDGRMHDEAAEDF 117

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 118 LAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 152


>gi|291518517|emb|CBK73738.1| peptide deformylase [Butyrivibrio fibrisolvens 16/4]
          Length = 164

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 82/141 (58%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +  +P++++   +  LID+M + MY  DG+GLAA Q+GVL R+ VID+ +     
Sbjct: 12  DDVLLKTCKPVKELTPKLRTLIDDMYDTMYDADGVGLAAPQVGVLRRICVIDIGE----- 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+  INP ++  S +     EGCLS+P     V R  +  V+ ++ + +  I+  + L+
Sbjct: 67  GPVTLINPVVLETSGE-QTGNEGCLSVPGKTGIVTRPNYAKVKALNEDMEEFIVEGEELM 125

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  L HE+DHL+G ++ + + 
Sbjct: 126 ARALLHEIDHLDGHIYTEKVE 146


>gi|20150600|pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150601|pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150602|pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150603|pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150604|pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150605|pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150606|pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150607|pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150608|pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150609|pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
          Length = 183

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 3/163 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V +PDPILRR S  +   + ++  ++    ++ Y + GIGL+A Q+ +  R++V + L 
Sbjct: 5   IVKYPDPILRRRSE-VTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNALY 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +    +N  +FINP I+  S       EGCLS       V+R + +++ Y D N    + 
Sbjct: 64  EKRKEENERIFINPSIVEQSLVKLKLIEGCLSF-GIEGKVERPSIVSISYYDINGYKHLK 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ +   QHE DHLNG LFID  +++ +  +  K+++L++
Sbjct: 123 ILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 165


>gi|172057935|ref|YP_001814395.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171990456|gb|ACB61378.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15]
          Length = 461

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 4/145 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +LR+  + + K +  +  +ID M + MY  DG+GLAA QI    R+ V+   D
Sbjct: 4   VVEVPNEVLRQKCQRVTKFDKKLGKMIDRMFDTMYEYDGVGLAAPQINQPIRVAVVHTDD 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+II  +    +  EGCLS+P     V+R   I V+  D   +   I 
Sbjct: 64  ET---GPIELINPEIIEATGS-EIDDEGCLSMPGIFGPVERFEQIVVKSQDRLGRSVKIK 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150
           A+G  A  +QHE+DHL+G+LF D L
Sbjct: 120 ANGFFARAIQHEMDHLDGVLFTDKL 144


>gi|83855042|ref|ZP_00948572.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
 gi|83842885|gb|EAP82052.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
          Length = 145

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 85/146 (58%), Gaps = 6/146 (4%)

Query: 21  IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80
           + +IN +I  L D+M++ M +  G+GLAA QIGV  ++ V+D      R   +   NP +
Sbjct: 1   MAEINDEIRALWDDMIDTMDAMPGVGLAAPQIGVSLQVAVVDASQA--RDKRIRLANPVV 58

Query: 81  ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD--GLLATCLQHEL 138
           I  S   + Y+E   ++P   A ++R   + VRY+D   Q   +  D  GL AT +QH++
Sbjct: 59  IDASAIMNEYEEASPNLPGISAKIRRPRGVKVRYLD--EQGATVTRDFVGLEATSVQHQI 116

Query: 139 DHLNGILFIDHLSRLKRDMITKKMSK 164
           DHL G +F+D+LS+ +RDM+ +K  K
Sbjct: 117 DHLAGKMFVDNLSKTRRDMLLRKARK 142


>gi|238063927|ref|ZP_04608636.1| peptide deformylase [Micromonospora sp. ATCC 39149]
 gi|237885738|gb|EEP74566.1| peptide deformylase [Micromonospora sp. ATCC 39149]
          Length = 185

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   ++++  L+ ++ + M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDAELRRLVADLTDTMREQNGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D+ D   H  NP       ++ F D +     EGCLSIP    D KR   +  +  +  
Sbjct: 61  FDVDDVLGHLVNP-------VLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVVAKGFNGY 113

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                I   GL+A C+QHE DHL+G+LF+D L    R    K + +
Sbjct: 114 GDPVQIVGTGLMARCVQHETDHLDGVLFVDRLDPAGRKEAMKAIRQ 159


>gi|297559276|ref|YP_003678250.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296843724|gb|ADH65744.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 184

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V F DP+L   + P+ + +     L+D++LE + +    GLAA QIGV  R+  
Sbjct: 1   MTMRPIVRFGDPVLVTPTTPVTRFDKHTRALVDDLLETVEAPGRAGLAANQIGVGLRVFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +++           INP+I   S++     EGCLS+P       R+ +  V  +D   +
Sbjct: 61  YNVEGRIG-----YVINPRIAELSEEVQEGDEGCLSVPRLWYPATRAEYAVVTGVDLRNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              +   GL+A CLQHE DHL+G+++I+ L    R
Sbjct: 116 PVTVEGTGLMARCLQHETDHLDGMVYIERLDPQTR 150


>gi|260428274|ref|ZP_05782253.1| peptide deformylase [Citreicella sp. SE45]
 gi|260422766|gb|EEX16017.1| peptide deformylase [Citreicella sp. SE45]
          Length = 166

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 5/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++++PD    R+ +P E +   +++  L+ ++ E MY   G GLAA Q+GVL R+
Sbjct: 1   MSLREILLWPD---ERLKQPCETVADVAEVEQLVTDLFETMYDAPGRGLAAPQVGVLKRV 57

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            V+D         P+  INP+I+  S++ +   EGCLSIP   A V+R   + + + D +
Sbjct: 58  FVMDAGWKEGDMVPLACINPEIVEVSEETASGPEGCLSIPGVTAQVRRPVRVRMAFTDLS 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              Q    +G  A   QHE DHL G++  D L
Sbjct: 118 GTRQERDFEGSEAIVAQHEYDHLEGLVHFDRL 149


>gi|67924995|ref|ZP_00518380.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
 gi|67853169|gb|EAM48543.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
          Length = 173

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 6/148 (4%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           +PILR+ ++ ++ + +  +  L+D +L      +G+G+AA Q+   YRL V+    +   
Sbjct: 13  NPILRQQAQLVQDLTDQKLQQLMDTLLTTARDANGVGIAAPQVSQSYRLFVVCSHPNPRY 72

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A   +P + INP+II+ +D+     EGCLS+P  R  V R   ITV Y+D   + Q  
Sbjct: 73  PDAPMMDPTIMINPRIISHNDEIVKGWEGCLSVPGVRGLVPRYKVITVEYLDRYGKLQQQ 132

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
                +A   QHELDHLNGILFID + +
Sbjct: 133 KLKDFVARIFQHELDHLNGILFIDRVDK 160


>gi|302866831|ref|YP_003835468.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315503246|ref|YP_004082133.1| peptide deformylase [Micromonospora sp. L5]
 gi|302569690|gb|ADL45892.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315409865|gb|ADU07982.1| peptide deformylase [Micromonospora sp. L5]
          Length = 186

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   ++++  LI ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDAELRKLIADLTDTMREQSGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D+ D   H  NP       ++ F D +     EGCLSIP    D KR   +  +  +  
Sbjct: 61  FDVDDVLGHLVNP-------VLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVIAKGFNGY 113

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                I   GL+A C+QHE DHL+G+LF+D L    R    K + +
Sbjct: 114 GDPLQIVGTGLMARCVQHETDHLDGVLFVDRLDAAGRKEAMKAIRQ 159


>gi|218661137|ref|ZP_03517067.1| peptide deformylase [Rhizobium etli IE4771]
          Length = 184

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L+ V  P+   +  +  L D++L  M +  G+G+ A  IGV  R+ V
Sbjct: 21  MPVRPILRYPHQGLKTVCAPVTAFDDSLAALADDLLATMRAAPGVGITAAHIGVSLRVTV 80

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +   +++NP+I   S +  ++ EG +S+P    +V R   I  RY D + +
Sbjct: 81  LELDKTDGVR---LYVNPEITWQSQETMIHTEGSVSMPGATDEVTRPRAIRFRYQDADGK 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 138 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 181


>gi|291484124|dbj|BAI85199.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
          Length = 160

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R +    +NP+I+  S + +   EGCLS P    DVKR+ ++ VR  +   +
Sbjct: 61  VDIGDDRGRID---LVNPEILERSGEQTGI-EGCLSFPGVYGDVKRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|17229499|ref|NP_486047.1| polypeptide deformylase [Nostoc sp. PCC 7120]
 gi|23396565|sp|Q8YVH1|DEF2_ANASP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|17131097|dbj|BAB73706.1| polypeptide deformylase [Nostoc sp. PCC 7120]
          Length = 179

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 10/170 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++   +P LR+ +  +E I ++ I  LID+++  +   +G+G+A+ Q+   YRL ++  
Sbjct: 7   PIIQLGNPTLRQKAAWVENIHDATIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIVAS 66

Query: 64  QD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD-- 116
           +      HA    P   INPKI+  S +     EGCLS+P  R  V R   I V Y D  
Sbjct: 67  RPNPRYPHAPEMEPTAMINPKIVGHSTEIVEGWEGCLSVPGIRGLVPRHQAIEVEYTDRY 126

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            N Q Q +     +A   QHE DHL+G+LFID +      +  ++  +LV
Sbjct: 127 GNLQKQTL--TDFVARIFQHEFDHLDGVLFIDRVESNLNTITEEEYQELV 174


>gi|290957509|ref|YP_003488691.1| polypeptide deformylase [Streptomyces scabiei 87.22]
 gi|260647035|emb|CBG70134.1| putative polypeptide deformylase [Streptomyces scabiei 87.22]
          Length = 216

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  +P+L +  + + +   ++  L+D+M     + +G+GLAA Q+GV  ++ V D  
Sbjct: 43  PITVVGNPVLHKECKDVTEFGDELAKLVDDMFASQRTAEGVGLAANQVGVDLKVFVYDCP 102

Query: 65  DHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D   +++  V  NPK++    +        EGCLS+P     + R  +  V   D     
Sbjct: 103 DDEGKRHTGVICNPKLVELPAEARRLDDSNEGCLSVPTAYMPLARPDYAEVTGQDEKGNP 162

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 163 IKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205


>gi|239626610|ref|ZP_04669641.1| peptide deformylase [Clostridiales bacterium 1_7_47_FAA]
 gi|239516756|gb|EEQ56622.1| peptide deformylase [Clostridiales bacterium 1_7_47FAA]
          Length = 153

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 84/139 (60%), Gaps = 7/139 (5%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DPILR+  + ++ ++  I  L+D+M E ++ T+ G  LAA Q+G+L RLVVID  D+ H 
Sbjct: 11  DPILRKRCKEVKTVDDKIRLLLDDMAETLHHTENGAALAANQVGILKRLVVIDYCDY-HL 69

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           K     +NP+II +S       EGCLS P+      R   +T++ +D N +  II  +  
Sbjct: 70  K----LVNPQIIGYSG-VQECIEGCLSFPNRFVKTIRPQKVTIQSLDENGKEIIITGENE 124

Query: 130 LATCLQHELDHLNGILFID 148
           +A C  HEL+HL+GI+F+D
Sbjct: 125 MAKCFCHELEHLDGIIFLD 143


>gi|213965569|ref|ZP_03393763.1| peptide deformylase [Corynebacterium amycolatum SK46]
 gi|213951728|gb|EEB63116.1| peptide deformylase [Corynebacterium amycolatum SK46]
          Length = 167

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+L   +  +   ++ + +LID+M + M    G+GLAA Q+GVL R+ V
Sbjct: 1   MAVREVRLFGDPVLLSKAETVTDFDATLSHLIDDMFDTMDEQQGVGLAANQVGVLQRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   +  R +    +NP+     D+     EGCLSIP     V R A + V   D +  
Sbjct: 61  YDC--NGTRGH---IVNPEWEAIGDETVHEIEGCLSIPGINGPVTRHARVRVTGQDRHGT 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                AD LLA C+QHE DHL+G+LF   L RL+ D     M  L
Sbjct: 116 PVSFEADDLLARCVQHESDHLDGVLF---LKRLEGDERKTAMRSL 157


>gi|170781968|ref|YP_001710300.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156536|emb|CAQ01687.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 188

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R ++  + D+ +L+ +M E M    G+GLAA Q+GV  R+ V
Sbjct: 1   MAVLPIRITGDPVLHAPARDVQAFDDDLRSLVADMYETMDEAPGVGLAAPQVGVPLRVFV 60

Query: 61  IDLQDHAHRK------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
              +            NP +FI P  +  +D+    +EGCLS P  R  + R+    +R 
Sbjct: 61  YSYETDDGEPLRGVAVNPDLFITPVAVREADE-DTEEEGCLSFPGERFPLVRADRAILRA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D + +   I A G  A  LQHE DHL+G+L+ D L+   R  + K + K
Sbjct: 120 VDLDGRPYEIEAAGWFARILQHEYDHLDGLLYTDRLAHEHRKPVAKVIRK 169


>gi|57238913|ref|YP_180049.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden]
 gi|58578845|ref|YP_197057.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden]
 gi|58616903|ref|YP_196102.1| peptide deformylase 1 [Ehrlichia ruminantium str. Gardel]
 gi|57160992|emb|CAH57898.1| putative peptide deformylase 2 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416515|emb|CAI27628.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Gardel]
 gi|58417471|emb|CAI26675.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden]
          Length = 194

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 16/158 (10%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------QD 65
           L  +S PIEKI+ D++ L D+M++VM ++  +GL+AVQ+G   R+ VI++        QD
Sbjct: 15  LHAISHPIEKIDQDVIALADDMMKVMENSKTVGLSAVQLGSHKRMFVINMFSGLFDMTQD 74

Query: 66  -------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDC 117
                  H+     MV INP+I++FS +     EGC S   Y   ++ R   +  RY D 
Sbjct: 75  IKVLSGHHSLHGKNMVCINPEILSFSAETVDLFEGCSSAKSYGLINITRPRHMDFRYTDL 134

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                II   G L+ C+QHE+DHLNGIL  + +  +K 
Sbjct: 135 FGNKCIIRVYGWLSRCIQHEMDHLNGILLANVVDNIKN 172


>gi|256826367|ref|YP_003150327.1| peptide deformylase [Kytococcus sedentarius DSM 20547]
 gi|256689760|gb|ACV07562.1| peptide deformylase [Kytococcus sedentarius DSM 20547]
          Length = 192

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I     L + ++ + ++  +I  L+ +M + M + +G+GLAA Q+GV +R+ V
Sbjct: 1   MAVRPITIIGHKALHQPTKKVREVTDEIRTLVADMFDTMEAAEGVGLAANQVGVRWRIFV 60

Query: 61  IDLQDHAHRKNP---MVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            D   H     P    V +NP      +   S D     EGCLS+P       RS +  V
Sbjct: 61  YDCT-HDPEAGPDARGVVVNPVLEKEHVSPLSADPEADHEGCLSVPGESFPTARSDWARV 119

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS----RLKRDMITKK 161
              D +     +   GLL  CLQHE DHL+G L+++ LS    R  RD I ++
Sbjct: 120 TGTDLDGNAISVEGTGLLGRCLQHETDHLDGHLYVERLSPEDKRRARDAIKER 172


>gi|194014710|ref|ZP_03053327.1| peptide deformylase [Bacillus pumilus ATCC 7061]
 gi|194013736|gb|EDW23301.1| peptide deformylase [Bacillus pumilus ATCC 7061]
          Length = 160

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+V+ P  +L + + P++  +  +  L+D+M + M   DG+GLAA QIG+  R+ V
Sbjct: 1   MAVKPIVMHPAEVLEQKAEPVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   R +    +NP+++      +   EGCLS P     V+R +++ V+  D   +
Sbjct: 61  VDIGEEPGRID---LVNPEVLEIKGSQTDI-EGCLSFPSLYGTVERPSYVKVKAFDKKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              I A+G LA  L HE+DHL+GILF    S++ +    K+++++
Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFT---SKIIQTYTEKELAEM 158


>gi|260555892|ref|ZP_05828112.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606]
 gi|260410803|gb|EEX04101.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606]
          Length = 160

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 87/147 (59%), Gaps = 8/147 (5%)

Query: 13  ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R++++  + +   
Sbjct: 14  ILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRVIIVASRPNPRY 73

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + V+Y+    +    
Sbjct: 74  PDAPEMNAVVMVNPEILEFSSEMCLGEEGCLSVPDERGQVERAEMVKVKYLTLQGETVET 133

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
              G  A  +QHE+DHL+GILF++ +S
Sbjct: 134 IFHGFPARIVQHEVDHLDGILFVERIS 160


>gi|261749262|ref|YP_003256947.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497354|gb|ACX83804.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 180

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 7/154 (4%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V++ +PILR+  +   I      I  L+ +M E ++   GIGLAA QIG   RL +++
Sbjct: 4   PIVVYGNPILRKKCIDIDIYSCRKKIQELVKDMFETIHKVKGIGLAAPQIGKNIRLFIVE 63

Query: 63  ----LQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               L++     N   VFIN +I+        + EGCLSIP     VKR + +++ Y D 
Sbjct: 64  TPYLLENGKDIDNYKEVFINARILKIHGKEYEFNEGCLSIPGIMGYVKRKSHVSIEYYDH 123

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           N + +     G+ A  +QHE DH+ G LFID+ S
Sbjct: 124 NWKKKKETLKGICARVIQHEYDHMEGKLFIDYFS 157


>gi|254518787|ref|ZP_05130843.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
 gi|226912536|gb|EEH97737.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
          Length = 150

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 90/152 (59%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + + +F   ILR+ S+ +  ++  I  ++++M + MY+T+ G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFGGEILRKRSKEVLVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NP+II   +      EGCL+ P+    +KR A +T++ ++   
Sbjct: 61  VIDMG-----QGLIKLVNPRIIK-KEGIQEVIEGCLNYPNRWGKLKRPAKVTIQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+   G LA C  HE+DHL+GILF D ++
Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLDGILFTDFVT 146


>gi|308177754|ref|YP_003917160.1| peptide deformylase [Arthrobacter arilaitensis Re117]
 gi|307745217|emb|CBT76189.1| peptide deformylase [Arthrobacter arilaitensis Re117]
          Length = 187

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 9/146 (6%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDH 66
           I  DP+LR  ++ +     ++  L+++M + M +  G GLAA Q+GV  R+      Q+ 
Sbjct: 8   IIGDPVLRTPAQEVTDFGPELQKLVEDMDQTMENVTGAGLAAPQVGVSLRVFTYQTGQER 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            H  NP       ++  S+D+   Q EGCLSIP   A V+R   +     D       I 
Sbjct: 68  GHIVNP-------VLELSEDYQEDQVEGCLSIPGIAAPVRRRRHVKATGFDKFGNPVEIE 120

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
            DGLLA C QHE DHL+GILF+D L 
Sbjct: 121 GDGLLARCFQHETDHLDGILFLDRLE 146


>gi|197302409|ref|ZP_03167465.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC
           29176]
 gi|197298530|gb|EDY33074.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC
           29176]
          Length = 159

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D IL +  + ++K+      LI +ML+ MY   G+GLAA Q+G+L ++VVID+ +     
Sbjct: 11  DEILGKQCKEVKKMTIRTKILIGDMLDTMYEKMGVGLAAPQVGILKQIVVIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+II  S +    +EGCLS+P     V R  ++ VR ++   +   I  +GLL
Sbjct: 66  GPIVLINPEIIETSGE-QTGEEGCLSVPGKWGIVTRPNYVKVRALNEEMEEFEIEGEGLL 124

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A    HE+DHL+G L++D + 
Sbjct: 125 ARAFCHEIDHLSGHLYVDKVE 145


>gi|312195559|ref|YP_004015620.1| peptide deformylase [Frankia sp. EuI1c]
 gi|311226895|gb|ADP79750.1| peptide deformylase [Frankia sp. EuI1c]
          Length = 183

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  +  +   + ++  L++++ E M+   G GLAA Q+GV  R+  
Sbjct: 1   MAVRDIRLFGDPVLRTKAEQVTTFDKELRKLVNDLGETMWEASGAGLAAPQLGVSLRVFT 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                D  DH         INP +  FS++    +EGCLS+P    ++KR   +     +
Sbjct: 61  FLDDDDEIDH--------LINPVLGPFSEELQDGEEGCLSLPGLSFELKRPERVLAIGQN 112

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                  +   G+++ CLQHE DHL+GILFID L R  +    K + +
Sbjct: 113 MYGDPVQVEGSGIVSRCLQHETDHLDGILFIDKLDRETKKAAMKAIRE 160


>gi|329939688|ref|ZP_08288989.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
 gi|329301258|gb|EGG45153.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
          Length = 216

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTEFDEELAKLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    +        EGCLS+P     + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPKLVELPAERRRLDDNNEGCLSVPTAYVSLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205


>gi|300741742|ref|ZP_07071763.1| peptide deformylase [Rothia dentocariosa M567]
 gi|300380927|gb|EFJ77489.1| peptide deformylase [Rothia dentocariosa M567]
          Length = 190

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 76/140 (54%), Gaps = 5/140 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR    PI   + ++  LID+ML+ MY  +G+GLA  QIG+  ++      D     
Sbjct: 11  DPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFTFGGIDDRE-- 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                INP + T ++      EGCLS+P  ++D  R  +  VR +D   +  ++  +GL 
Sbjct: 69  --GYIINPVLETGTEP-QEGGEGCLSVPGMKSDTPRMNWARVRGVDKMGKPLVLEGEGLF 125

Query: 131 ATCLQHELDHLNGILFIDHL 150
           A  LQHE DHL+G LFID L
Sbjct: 126 ARMLQHETDHLHGKLFIDRL 145


>gi|37521298|ref|NP_924675.1| peptide deformylase [Gloeobacter violaceus PCC 7421]
 gi|35212295|dbj|BAC89670.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
          Length = 275

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH 66
           DP+LR  ++P+  ++I S+ I  LI  M E M    G+GLAA Q+GV  +LVVI D  ++
Sbjct: 101 DPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIEDRPEY 160

Query: 67  AHR----------KNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             R          + P+ F   INP +    ++ +V+ EGCLSIP Y+  V R+  + V 
Sbjct: 161 IERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARARVVRVE 220

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D  A   +I A G  A  LQHE+DHLNG+L +D +
Sbjct: 221 ALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRM 257


>gi|54309245|ref|YP_130265.1| polypeptide deformylase [Photobacterium profundum SS9]
 gi|46913677|emb|CAG20463.1| hypothetical polypeptide deformylase [Photobacterium profundum SS9]
          Length = 175

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 84/151 (55%), Gaps = 10/151 (6%)

Query: 11  DPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQ 64
           +P+LR  +  +  +  +  + L+ ++ ++M S  G+G+AA Q+G   R  ++     D  
Sbjct: 12  NPLLRVPAEALSAVQIETALPLLKSLEQIMLSHQGVGIAAPQVGQPLRAFIVASRPNDRY 71

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            HA    P + INP+++  S++     EGCLSIP  RA V R   I VRY+  NA   +I
Sbjct: 72  PHAPLMEPTIMINPELLWQSEEMEKDWEGCLSIPGIRAKVNRYTHIRVRYL--NASGDVI 129

Query: 125 YAD--GLLATCLQHELDHLNGILFIDHLSRL 153
             +  G +A   QHELDHLNGI+F+D   +L
Sbjct: 130 ETEFTGFIARIFQHELDHLNGIVFLDRADKL 160


>gi|325188477|emb|CCA23012.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 179

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 4/154 (2%)

Query: 1   MVKKP--LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
             KKP  L+   +  LRR+  P+  +   ++  L + M + +   DG+G+AA Q+G   R
Sbjct: 3   FAKKPFELIFLGNSALRRICEPVFDVKCPEMKRLAEAMRKQLIEQDGVGIAAPQLGANCR 62

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           L ++ +++        VF NPK+  FS +     EGCLS+P Y   VKRS  I V+Y   
Sbjct: 63  LFLMSMEESNVSALEAVF-NPKVTFFSKEMEKDFEGCLSVPHYSGIVKRSREIQVQYSTA 121

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               +    +G  A   QHELDHLNG+LF+D + 
Sbjct: 122 LGMKEKRTLEGFPARVFQHELDHLNGVLFLDKVE 155


>gi|296120519|ref|YP_003628297.1| peptide deformylase [Planctomyces limnophilus DSM 3776]
 gi|296012859|gb|ADG66098.1| peptide deformylase [Planctomyces limnophilus DSM 3776]
          Length = 196

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 6/155 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64
           +V +  P LR  S P+ +INS++   I  M E+MY+  GIGLA+ Q+ +  +  +++L  
Sbjct: 5   IVKYGHPALRHKSTPVTEINSELRKAIAEMFELMYAAKGIGLASNQVAIPRQFFILNLTG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD----CNAQ 120
           D A +   +VFINP I+         +EGCLS P     VKR+  + +   D    C   
Sbjct: 65  DAAEKDEEVVFINPVILNRKSSCE-GEEGCLSFPGLYGPVKRAGEVLIEAFDLDGNCFEM 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                 D L    +QHE DHL+G+LFID ++   R
Sbjct: 124 TLSAKEDDLAVRAVQHESDHLDGMLFIDRMTDRAR 158


>gi|134098682|ref|YP_001104343.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003631|ref|ZP_06561604.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911305|emb|CAM01418.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 182

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   + ++ NL+ ++ + M    G G+AA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTRAEEVVDFDKELRNLVQDLWDTMEDQGGAGIAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                 A        +NP      ++     EGCLSIP    D +R   +  R  + + +
Sbjct: 61  YHCDGFAGH-----LVNPTFTAVDEELQFGPEGCLSIPGMSWDCERYRNVVARGWNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
              I    LLA C+QHE DHL+G+LF+D L    R    +++
Sbjct: 116 PVEIEGTDLLARCIQHETDHLDGVLFVDRLDEQTRKAAMREI 157


>gi|302037899|ref|YP_003798221.1| peptide deformylase [Candidatus Nitrospira defluvii]
 gi|300605963|emb|CBK42296.1| Peptide deformylase [Candidatus Nitrospira defluvii]
          Length = 163

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L+  +  +   +  +  ++ +ML+ + ++ G+ LAA QIG   +++V
Sbjct: 1   MAIRPILQYPHQALKSTNAAVAPSDPAVQAVVQDMLDTLAASPGVALAAPQIGHAVQVIV 60

Query: 61  IDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+      +    +V +NP I++     SV +EGCLS+PDY  +V R     V  +   
Sbjct: 61  VDVSRKKGERGHGLVVLLNPVILSLEGKKSV-REGCLSVPDYTGNVLRYEEALVEGLTPE 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            +   + A G  A   QHE+DHLNG+LF+D +  L  D+  +K
Sbjct: 120 GRVVTVSASGFGALAFQHEVDHLNGMLFLDRIESLSTDLFRRK 162


>gi|291549493|emb|CBL25755.1| peptide deformylase [Ruminococcus torques L2-14]
          Length = 165

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 6/141 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +  +P+ K+      LI++ML+ MY   G+GLAA Q+G+L ++VVID+ +     
Sbjct: 11  DDVLEKQCKPVTKMTLRTKILIEDMLDTMYEKMGVGLAAPQVGILKQIVVIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+I+  S +    +EGCLS+P     V R  ++ VR ++ N +   I  + LL
Sbjct: 66  GPIVLINPEIVETSGE-QTGEEGCLSVPGKWGIVTRPNYVKVRALNENMEEFEIEGEELL 124

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A    HE+DHL G L+++ + 
Sbjct: 125 ARAFCHEIDHLGGHLYVEKVE 145


>gi|29840076|ref|NP_829182.1| peptide deformylase [Chlamydophila caviae GPIC]
 gi|33301049|sp|Q823U4|DEF_CHLCV RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|29834424|gb|AAP05060.1| polypeptide deformylase [Chlamydophila caviae GPIC]
          Length = 186

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 6/148 (4%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN- 71
           ILRR +  I +I      L+ +M E M +  G+GLAA Q+G    L V+ ++      + 
Sbjct: 12  ILRRKADIIPEITDATRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVMCVEGETEEGDL 71

Query: 72  -----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                P V+INP +   S+D  + +EGCLSIP  RADV R   ITV  ++ + Q    + 
Sbjct: 72  IFCDFPKVYINPVLSNPSEDLVIGREGCLSIPGLRADVYRPQSITVTAVNLDGQEFTEHL 131

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLK 154
           +G  A  + HE DHL+G+L+ID +   K
Sbjct: 132 EGFPARIIMHENDHLHGVLYIDKMEEPK 159


>gi|269127211|ref|YP_003300581.1| peptide deformylase [Thermomonospora curvata DSM 43183]
 gi|268312169|gb|ACY98543.1| peptide deformylase [Thermomonospora curvata DSM 43183]
          Length = 181

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 8/161 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+ +F DP+LR  + P++  + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MAVKPIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMIDASGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             ++D   H  NP        +  S+D    +EGCLSIP       R+     +  +   
Sbjct: 61  YCVEDRLGHLVNP-------TLDLSEDQEEDEEGCLSIPGLTFPTPRAKRAVAKGFNMYG 113

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           +   +    LLA C+QHE DHL+GILFID +   +R    K
Sbjct: 114 EPITLEGTDLLARCVQHETDHLDGILFIDRMDPEQRKAAMK 154


>gi|89098706|ref|ZP_01171588.1| peptide deformylase [Bacillus sp. NRRL B-14911]
 gi|89086668|gb|EAR65787.1| peptide deformylase [Bacillus sp. NRRL B-14911]
          Length = 181

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 4/149 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +V +P  IL      + + +  ++ L+++M + M   DG+GLAA QIG+  R+ V+D+
Sbjct: 24  RKIVTYPAEILEEPCETVTEFDKKLVKLLNDMYDTMIEFDGVGLAAPQIGIRKRIAVVDI 83

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D       +  INP+II    +     EGCLS P    +V R   + ++  D   +   
Sbjct: 84  DDE---NGTIELINPEIIETGGE-QTGPEGCLSFPGLYGEVTRPFTVKIKAQDRKGKSFT 139

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152
           + AD  LA  +QHE+DHL+G+LF   ++R
Sbjct: 140 LEADDFLARAIQHEIDHLDGVLFTSKVNR 168


>gi|295840257|ref|ZP_06827190.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|295827867|gb|EDY45695.2| peptide deformylase [Streptomyces sp. SPB74]
          Length = 196

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 76/166 (45%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL +   P+L   +R        +  L++++   MY+  G+GLAA QIG   RL V D 
Sbjct: 27  RPLSLHGAPVLTTPARESGDFGPRLEKLVEDLFATMYAARGVGLAAPQIGEGVRLFVYDC 86

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP+++          EGCLS+P   A   R     V     +   + 
Sbjct: 87  PDDEDERHLGHLVNPRLVEVDGPLVRGPEGCLSLPGLEAATPRFDRAVVEGRTADGTRRR 146

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   G  A CLQHE DHL G L++D L   +R  + ++  +    R
Sbjct: 147 VEGTGFFARCLQHEYDHLEGGLYVDRLDPRRRRKVLREAGRTTWGR 192


>gi|228992595|ref|ZP_04152522.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442]
 gi|228998643|ref|ZP_04158230.1| Peptide deformylase [Bacillus mycoides Rock3-17]
 gi|229006144|ref|ZP_04163831.1| Peptide deformylase [Bacillus mycoides Rock1-4]
 gi|228755097|gb|EEM04455.1| Peptide deformylase [Bacillus mycoides Rock1-4]
 gi|228761111|gb|EEM10070.1| Peptide deformylase [Bacillus mycoides Rock3-17]
 gi|228767229|gb|EEM15865.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442]
          Length = 158

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  PD +L      +   +  ++NL+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPDEVLETPCERVMNFDKKLVNLLKDMHETMLVADGVGLAAPQVGVSLQVAVVDIGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPVILEKRGE-QVGPEGCLSFPGLYGEVERAEYIKVRAQNRRGKIFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           AD  LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 ADDFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|226305513|ref|YP_002765473.1| peptide deformylase [Rhodococcus erythropolis PR4]
 gi|226184630|dbj|BAH32734.1| peptide deformylase [Rhodococcus erythropolis PR4]
          Length = 188

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P++ +  P+L   +RP+ +  SD+ +L+ +M     +  G GLAA QIGV   + + 
Sbjct: 11  TAQPIIRWGTPVLHAPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 70

Query: 62  DLQDHAHRKNPMVFINPKI-ITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    +   V  NP + +  + D  +    EGCLS+P    D+ R  F T R  D  
Sbjct: 71  DCTDEVGTQRTGVVCNPVVDLPEAVDRQLVDDCEGCLSLPGAYTDLARPDFSTCRGNDQY 130

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                I A G L  C QHE DH+NGI+F D L   KR  + +
Sbjct: 131 GNPIEITAGGTLGRCFQHETDHINGIVFGDRLPTRKRKQLYR 172


>gi|224825207|ref|ZP_03698313.1| peptide deformylase [Lutiella nitroferrum 2002]
 gi|224602878|gb|EEG09055.1| peptide deformylase [Lutiella nitroferrum 2002]
          Length = 170

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 6/156 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +K+P +    P+LR+ +  + + ++  ++ L+ +M +  Y+ +G+GLAA QIGV  R++V
Sbjct: 1   MKRPFLPQEHPMLRQHAAAVTEFDTPALHELVQDMFDTQYAGNGVGLAAPQIGVPLRVIV 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A    P V INP+I   ++      EGC S+P  R  V R   I  R  
Sbjct: 61  FAYGGGERDPGAPAIPPTVLINPEIRPDAEHIEEDWEGCFSVPGQRGRVPRWQAIRYRAQ 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           D   +     A+G  A  +QHE+DHLNG LFIDHL 
Sbjct: 121 DIQGRLVEGRAEGFHARIIQHEVDHLNGTLFIDHLP 156


>gi|330466981|ref|YP_004404724.1| peptide deformylase [Verrucosispora maris AB-18-032]
 gi|328809952|gb|AEB44124.1| peptide deformylase [Verrucosispora maris AB-18-032]
          Length = 186

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  LI ++ + M  + G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLIADLTDTMRDSAGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D+ D   H  NP       ++ F D +     EGCLSIP    D KR   +  +  +  
Sbjct: 61  FDVDDVVGHLVNP-------VLEFPDAEEQDGPEGCLSIPGMYFDTKRRQNVIAKGFNGY 113

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                I   GL+A C+QHE DHL+G+LFID L    R    K + +
Sbjct: 114 GDPLQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKAIRQ 159


>gi|167768544|ref|ZP_02440597.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1]
 gi|317498700|ref|ZP_07956992.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710068|gb|EDS20647.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1]
 gi|291560506|emb|CBL39306.1| peptide deformylase [butyrate-producing bacterium SSC/2]
 gi|316894042|gb|EFV16232.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 159

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 4/156 (2%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +  D +LR+  + ++++   +  L+++M + MY   G+GLAA Q+G+L R+VVID  +  
Sbjct: 8   VLGDDVLRKKCKEVKEMTPRMHTLVEDMYDTMYEAMGVGLAAPQVGILKRIVVIDTGEEG 67

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                +  +NP +IT  +   V +EGCLS+P   A VKR   +     D +     +   
Sbjct: 68  ---ECVTLVNP-VITLKEGEQVGEEGCLSLPGKVAVVKRPDHVICEAFDEDMNPITVEGF 123

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           GL A  L HE DHL+GIL+ D      RD+  +++ 
Sbjct: 124 GLFARALCHETDHLDGILYPDVAEEPARDVTMEEVE 159


>gi|307329984|ref|ZP_07609136.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306884360|gb|EFN15394.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 212

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 6/158 (3%)

Query: 13  ILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           ILRR  R + +  + ++  LID+M   MY  +G GLAA Q+ V  RL V D  D    ++
Sbjct: 35  ILRRSCREVTEFGTPELSALIDDMFLTMYIAEGAGLAANQVDVELRLFVYDCPDDNGVRH 94

Query: 72  PMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
               INP ++   D          EGCLS+P  R DV R+    VR +D +    +I   
Sbjct: 95  VGHIINP-VLDQPDPAERLLIEDAEGCLSVPGARMDVPRTDRTVVRGVDKDGNPLVIEGT 153

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           G  A CLQHE DHL+G L+ID LS+  R    ++M+ L
Sbjct: 154 GYFARCLQHEADHLSGHLYIDRLSKRDRKDALRQMTDL 191


>gi|291300069|ref|YP_003511347.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
 gi|290569289|gb|ADD42254.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
          Length = 183

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +F DP+LR  +  ++  + +   L+ N+ + M    G GLAA Q+GV  R+   D+ 
Sbjct: 5   PIRLFGDPVLRTPADEVKTFDKEFRKLVRNLTDTMLDEGGAGLAAPQLGVGLRVFAFDVD 64

Query: 65  DH-AHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPD-YRADVKRSAFITVRYMDCNAQH 121
           D   H  NP       ++ F D+      EGCLSIP  Y   V+R   I   Y +     
Sbjct: 65  DVIGHLANP-------VLEFPDEEEQDGPEGCLSIPGLYFDTVRRQNVIAKGYNEYGDPM 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           QI+   GL+A CLQHE DHL+GILF+D L   +R    K++
Sbjct: 118 QIV-GTGLMARCLQHETDHLDGILFLDRLDPERRKAAMKEI 157


>gi|311068093|ref|YP_003973016.1| peptide deformylase [Bacillus atrophaeus 1942]
 gi|310868610|gb|ADP32085.1| peptide deformylase [Bacillus atrophaeus 1942]
          Length = 160

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKPIVTHPAEVLETPAEAVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R +    INP+I+  S       EGCLS PD   +V R  ++ V+  +   +
Sbjct: 61  VDIGEESGRID---LINPEILE-SGGKQTGIEGCLSFPDLYGEVTRPDYVKVQAYNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +  A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFVFEATGFLARAVQHEMDHLDGVLFTSKVSK 148


>gi|119716828|ref|YP_923793.1| peptide deformylase [Nocardioides sp. JS614]
 gi|119537489|gb|ABL82106.1| peptide deformylase [Nocardioides sp. JS614]
          Length = 199

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 3/159 (1%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           P++ R  +P+   + ++  L  +M+  MY+ DG+GLAA QIGV   + V D  D +    
Sbjct: 32  PVMHRAQQPVTTYDDELRALAADMVATMYAADGVGLAACQIGVDLAMFVFDCPDDSGVHT 91

Query: 72  PMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
             V  NP++             +EGCLS P    +  R    +V     + +      DG
Sbjct: 92  VGVVCNPQLTLPEGRDRQLDESEEGCLSFPGAHVECARPDQASVTGTGLDGEPVSFSGDG 151

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LLA CLQHE DH  G +F D LS   R  + K   + V+
Sbjct: 152 LLARCLQHETDHTRGTVFGDRLSTKLRKRLQKAHDRAVE 190


>gi|299771142|ref|YP_003733168.1| peptide deformylase [Acinetobacter sp. DR1]
 gi|298701230|gb|ADI91795.1| peptide deformylase [Acinetobacter sp. DR1]
          Length = 160

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 18/151 (11%)

Query: 13  ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           IL+ ++ P+   ++NSD +  L   M   M   +G+G+AA Q+ +  R++++     A R
Sbjct: 14  ILKLIAAPVSANELNSDWLYQLAAAMQATMLERNGVGIAAPQVYISKRVIIV-----ASR 68

Query: 70  KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            NP          +V +NP+I+ FS++  + +EGCLS+PD R  V+R+  + V+Y+    
Sbjct: 69  PNPRYPDAPEMDAVVMVNPEILEFSNETLLGEEGCLSVPDERGQVERAEMVKVKYLTLQG 128

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +       G  A  +QHE+DHLNG+LF++ +
Sbjct: 129 EAVETVFHGFPARIVQHEVDHLNGVLFVERI 159


>gi|284031594|ref|YP_003381525.1| peptide deformylase [Kribbella flavida DSM 17836]
 gi|283810887|gb|ADB32726.1| peptide deformylase [Kribbella flavida DSM 17836]
          Length = 201

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  + + ++ RV++P+     D+  L+ +M+  M + +G+GLAA Q+GV  +L V D  
Sbjct: 12  PITRWGEDVMHRVNQPVTDFGDDLHKLVADMVATMNAAEGVGLAANQVGVDLQLFVFDCP 71

Query: 65  DHAHRKNPMVFINPKI-ITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D    ++  V  NPK+ +    D      +EGCLS+P       R  +  V  +D +   
Sbjct: 72  DRDGVRHQGVVCNPKLELPEGKDRHLDEGEEGCLSLPGAFTKCARPDYAKVTGVDEHGNP 131

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                +GLLA CLQHE DH  G++F D LSR  +  +  +  +L 
Sbjct: 132 VSYEGNGLLARCLQHETDHTQGMVFGDRLSRKYKKRLFAEAEELA 176


>gi|325955362|ref|YP_004239022.1| peptide deformylase [Weeksella virosa DSM 16922]
 gi|323437980|gb|ADX68444.1| Peptide deformylase [Weeksella virosa DSM 16922]
          Length = 223

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 5/151 (3%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           ILR  S  ++  +S +  L D ML  +    T G+G+AA QIG+    V I  Q    + 
Sbjct: 61  ILRTKSIDLDPTDSSVKKLADRMLATVLDEETRGVGIAAPQIGINRNAVWI--QRFDQKD 118

Query: 71  NPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
            P   FINPKI  +S      +EGCLSIPD   +V RS  I + + D + Q      +G 
Sbjct: 119 QPFQFFINPKITWYSSLLQKGREGCLSIPDTIGNVVRSYAIRIEFYDLDGQFHDEVIEGF 178

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A   QHE+DHLNG+LF D L   ++   TK
Sbjct: 179 TAVIAQHEVDHLNGVLFTDRLQEQEKTTYTK 209


>gi|254414456|ref|ZP_05028222.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
 gi|196178686|gb|EDX73684.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
          Length = 177

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 7/156 (4%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           +PILR++++PI+ +  + I  LI+ +     + +G+G+AA QI    RL ++  + +   
Sbjct: 12  NPILRQLAQPIDNVQDESIQKLIEALKAKAVAANGVGIAAPQISQSCRLFIVASRPNPRY 71

Query: 70  KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            N     P   INP+I+  SD      EGCLSIP  R  V R   I V Y +   + Q  
Sbjct: 72  PNAPTMEPTAMINPQIVAHSDQVVKGWEGCLSIPGIRGLVPRYQAIEVEYTNQEGKPQRQ 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                +A  +QHE DHLNGI+F+D +    +D+IT+
Sbjct: 132 QLTDFVARIVQHEYDHLNGIVFVDRVES-SQDLITE 166


>gi|86604999|ref|YP_473762.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
 gi|86553541|gb|ABC98499.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
          Length = 175

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 6/144 (4%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           DPIL +V+ P+ +  +  + NLI+ ML  +    G+GLAA Q+G   +++++  + +   
Sbjct: 10  DPILTQVAEPVAEFGTPALQNLIEEMLATLKEAQGVGLAAPQVGFPLQVIIVASRPNPRY 69

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A +  P+V +NP+ +  S++  +  EGCLS+P+ R  V RS  + V Y       Q +
Sbjct: 70  PDAPQMEPLVMVNPRPLACSEEQVLGWEGCLSVPNCRGLVARSREVEVEYHTPEGSRQRV 129

Query: 125 YADGLLATCLQHELDHLNGILFID 148
                 A   QHE DHL G LF+D
Sbjct: 130 VWRDFPARIFQHEYDHLRGRLFLD 153


>gi|21223589|ref|NP_629368.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|256785300|ref|ZP_05523731.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|289769194|ref|ZP_06528572.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|23396574|sp|Q9K4A0|DEF4_STRCO RecName: Full=Peptide deformylase 4; Short=PDF 4; AltName:
           Full=Polypeptide deformylase 4
 gi|8546887|emb|CAB94606.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|289699393|gb|EFD66822.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 216

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +    +     +   L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECEDVTDFGEEFQQLVADMFASQRTAEGVGLAANQIGVSKKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPRLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|218904997|ref|YP_002452831.1| peptide deformylase [Bacillus cereus AH820]
 gi|218538969|gb|ACK91367.1| peptide deformylase [Bacillus cereus AH820]
          Length = 156

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  R+ V+D+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLRVAVVDIGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|29654308|ref|NP_820000.1| peptide deformylase [Coxiella burnetii RSA 493]
 gi|154707431|ref|YP_001424426.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|161830427|ref|YP_001596722.1| peptide deformylase [Coxiella burnetii RSA 331]
 gi|39931093|sp|Q83CV9|DEF1_COXBU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|29541575|gb|AAO90514.1| peptide deformylase [Coxiella burnetii RSA 493]
 gi|154356717|gb|ABS78179.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|161762294|gb|ABX77936.1| peptide deformylase [Coxiella burnetii RSA 331]
          Length = 170

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 7/161 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVIDLQD 65
           +PDP L+  ++ +EK +  +  +ID M E  Y+           + +     + VID   
Sbjct: 7   YPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVIDFS- 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD-VKRSAFITVRYMDCNAQHQII 124
             ++  P+  +N +II  S + +  +EGC+S+     + V R+A I VR  D   +    
Sbjct: 66  -PNKDQPLCLVNAEIIERSGEHT-EEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKPVEF 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            ADG +A C+QHELDHLNGI+F+D LS LKR  I K++ KL
Sbjct: 124 EADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKL 164


>gi|302554040|ref|ZP_07306382.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302471658|gb|EFL34751.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 216

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +     +   L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTDFGDEFQQLVADMFASQRTAEGVGLAANQIGVDAKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    +        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHTGVVCNPKLVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|212212575|ref|YP_002303511.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
 gi|212010985|gb|ACJ18366.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
          Length = 170

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 7/161 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVIDLQD 65
           +PDP L+  ++ +EK +  +  +ID M E  Y+           + +     + VID   
Sbjct: 7   YPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVIDFS- 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD-VKRSAFITVRYMDCNAQHQII 124
             ++  P+  +N +II  S + +  +EGC+S+     + V R+A I VR  D   +    
Sbjct: 66  -PNKDQPLCLVNAEIIERSGEHT-EEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKPVEF 123

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            ADG +A C+QHELDHLNGI+F+D LS LKR  I K++ KL
Sbjct: 124 EADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKL 164


>gi|218680973|ref|ZP_03528870.1| peptide deformylase [Rhizobium etli CIAT 894]
          Length = 164

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P++ +P P L+ V  P+      +  L D++L  M +  G+G+ A  IGVL R+ V++L
Sbjct: 4   RPILHYPHPALKTVCAPVSDFGPSLAELADDLLATMRAAPGVGITAAHIGVLSRVTVLEL 63

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D A      +++NP+I  FS +   + EG +S+P    +V R   I  RY D       
Sbjct: 64  -DKAFGVR--LYVNPEITWFSKETMNHAEGSVSMPGATDEVIRPRAIRFRYQDGAGTVHE 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             A+G  A C+QHE+D L+GI ++  LSRL+RD + KK  K
Sbjct: 121 EAAEGFHAICIQHEVDQLDGIFWLQRLSRLRRDRLVKKWEK 161


>gi|225018698|ref|ZP_03707890.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum
           DSM 5476]
 gi|224948426|gb|EEG29635.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum
           DSM 5476]
          Length = 152

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+  D ILR+  R +   N  + +L+D++ E M+  DG+GLAA Q+GVL R VV
Sbjct: 1   MAIRTIVVDDDSILRKKCREVIDYNKRLHDLLDDLAETMHKADGVGLAAPQVGVLRRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  +NP+II  S   +   EGCLS P+    V+R   +TV+  D + +
Sbjct: 61  IDVGEGV-----IELVNPEIIKKSGSQN-GAEGCLSYPNEFGMVERPMQVTVKAFDRDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              +    LLA  + HE+DHL+GI+F D  + +  D
Sbjct: 115 EFKLIGKELLARAICHEVDHLDGIVFKDLATEMIED 150


>gi|302561940|ref|ZP_07314282.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000]
 gi|302479558|gb|EFL42651.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000]
          Length = 184

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL +  DP+L    R +     ++  L+D++   MY   G+GLAA Q+G   R+ V D 
Sbjct: 17  RPLTLLGDPVLHAPCREVTDFGPELARLVDDLFATMYEARGVGLAANQVGEPLRVFVYDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP+ +          EGCLS+P   A  +R     V       +   
Sbjct: 77  PDDEDVRHLGHVVNPRPVVTDGVVVRGPEGCLSLPGLEAGTERYDHAVVEGFTVTGEPVT 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ++  G  A CLQHE DHL+G ++ D L+  +   + ++  +
Sbjct: 137 VHGTGFFARCLQHECDHLDGRIYADRLTGWRHRRLMRQADR 177


>gi|50084241|ref|YP_045751.1| peptide deformylase 2 [Acinetobacter sp. ADP1]
 gi|49530217|emb|CAG67929.1| peptide deformylase 2 [Acinetobacter sp. ADP1]
          Length = 160

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 8/148 (5%)

Query: 11  DPILRRVSRPIEKINSD---IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           + IL+  + P+ +   D   +  L+  M   M   +G+G+AA QI V  R++++  + + 
Sbjct: 12  EEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIVASRPNP 71

Query: 67  ----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A    P+V INP+I  FS +  + +EGCLS+PD R  V+R+  I VRY     Q  
Sbjct: 72  RYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRYFSLQGQLI 131

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150
                G  A  +QHE+DHLNG+LF+D L
Sbjct: 132 EQRFHGFPARIVQHEIDHLNGVLFVDRL 159


>gi|38234602|ref|NP_940369.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200866|emb|CAE50571.1| peptide deformylase [Corynebacterium diphtheriae]
          Length = 187

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+VI  DP+L   + P+    +++ +LI +M E M +  G+GLAA Q+GV  RL V + 
Sbjct: 3   RPIVICGDPVLHNPTAPVSD-PAEVQDLIADMYETMEAARGVGLAANQVGVGLRLFVFNC 61

Query: 64  QD---HAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            D   H HR    NP++  +    T   D     EGCLS+P       R+ +  V  ++ 
Sbjct: 62  PDDEGHFHRGCVINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWARVTGLEA 121

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
           +    +    G LA C QHE+ HL+G L+ D L  R KR
Sbjct: 122 DGTPVVYEGTGFLARCFQHEVGHLDGFLYTDTLIGRWKR 160


>gi|326329763|ref|ZP_08196084.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
 gi|325952528|gb|EGD44547.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
          Length = 181

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAVQPIRLFGDPVLRKPAIEVVDFDKELHKLVADLTDTMLEAPGAGLAAPQIGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            +NP + T S++     EGCLS+PD   D +R+  +  +  D + +
Sbjct: 61  WYVDGQVGH-----LVNPDL-TLSEETQDGGEGCLSLPDITFDCRRALSVVAKGFDMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  +QHE DHL+GILFID L    R    K++ +
Sbjct: 115 PVTIEGSELLARAIQHETDHLDGILFIDRLDEAARKAAMKEIRE 158


>gi|302517742|ref|ZP_07270084.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|318080637|ref|ZP_07987969.1| polypeptide deformylase [Streptomyces sp. SA3_actF]
 gi|302426637|gb|EFK98452.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 183

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL ++  P+L   +R        +  L++++   MY+  G+GLAA QIG   R+ V D 
Sbjct: 14  RPLSLYGAPVLTTPARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D   R++    +NP+++          EGCLS+P   A   R     V     +   + 
Sbjct: 74  PDDEDRRHLGHLVNPRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARRR 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   G  A CLQHE DHL G L++D L   +   + ++  +    R
Sbjct: 134 VEGTGFFARCLQHEYDHLEGGLYVDRLDARRHRKVLREAGRTGWGR 179


>gi|149201579|ref|ZP_01878553.1| peptide deformylase [Roseovarius sp. TM1035]
 gi|149144627|gb|EDM32656.1| peptide deformylase [Roseovarius sp. TM1035]
          Length = 149

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 81/146 (55%), Gaps = 2/146 (1%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79
           P+ +I      L + M+ VM +  G+GLAA Q+G +  L V+D      R   +   NP+
Sbjct: 5   PLPEITDQTRALWNEMIAVMEAMPGVGLAATQLGEMQALAVVDAS--TARGQAVRMANPE 62

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
           I+  S     ++E    +P   A ++R   +TVR+++ +A+ +     GL AT +QH++D
Sbjct: 63  ILHASVQLRPHEEASPCLPGVSAMIERPRAVTVRFLNADAEVEERDFVGLWATSVQHQID 122

Query: 140 HLNGILFIDHLSRLKRDMITKKMSKL 165
           HL G ++ D L R+KRDM+ ++  K+
Sbjct: 123 HLQGRMYFDRLGRVKRDMLLRRARKI 148


>gi|119509174|ref|ZP_01628325.1| polypeptide deformylase [Nodularia spumigena CCY9414]
 gi|119466340|gb|EAW47226.1| polypeptide deformylase [Nodularia spumigena CCY9414]
          Length = 177

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++   DP+LR+ +  +E      I  LID++   +   +G+G+AA Q+   YRL ++  
Sbjct: 6   PIIQLGDPVLRQKAAWVENTQDKYIQKLIDDLTVTVAQANGVGIAAPQVAASYRLFIVAS 65

Query: 64  QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +    N     P   INP+II  S +     EGCLS+P  R  V R   +T+ Y D N
Sbjct: 66  RPNLRYPNAPVMEPTAMINPRIIDHSTEIVKGWEGCLSVPGIRGLVPRYKHLTIAYTDRN 125

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + +       +A   QHE DHL+G++F+D +     DMIT+
Sbjct: 126 GKFKKQELTDFVARIFQHEYDHLDGVVFVDRVEN-SLDMITE 166


>gi|157692252|ref|YP_001486714.1| peptide deformylase [Bacillus pumilus SAFR-032]
 gi|157681010|gb|ABV62154.1| formylmethionine deformylase [Bacillus pumilus SAFR-032]
          Length = 160

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+VI P  +L + +  ++  +  +  L+D+M + M   DG+GLAA QIG+  R+ V
Sbjct: 1   MAVKPIVIHPAEVLEQKAESVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R +    +NP+++      +   EGCLS P     V+R +++ V+  D   +
Sbjct: 61  VDIGEESGRID---LVNPEVLEVKGSQTDI-EGCLSFPSLYGTVERPSYVKVKAFDKKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              I A+G LA  L HE+DHL+GILF    S++ +    K+++++
Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFT---SKIIQTYTEKELAEM 158


>gi|332670777|ref|YP_004453785.1| peptide deformylase [Cellulomonas fimi ATCC 484]
 gi|332339815|gb|AEE46398.1| peptide deformylase [Cellulomonas fimi ATCC 484]
          Length = 166

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR    PI  I+  + +L+D++LE +      GLAA QIGV  R   
Sbjct: 5   MAMREIRTVGDPVLRTPCDPITTIDDRVRSLVDDLLETVDHEGRAGLAANQIGVGLRAFS 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ D          +NP I+  S+D +    EGCLS+P      +R+ +  V   D + 
Sbjct: 65  WNIDDEIG-----YVLNPVIVELSEDEYQDGDEGCLSVPGLWYPTRRAWYARVAGTDLDG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +  ++    L+A CLQHE+DHL+G+L++D L R  R
Sbjct: 120 KEVVVEGTELMARCLQHEVDHLDGMLYLDRLERSVR 155


>gi|172038579|ref|YP_001805080.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142]
 gi|171700033|gb|ACB53014.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142]
          Length = 171

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 9/161 (5%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           +PILR+ ++ +  I  D +   ID +L +     G+G+AA Q+   YRL ++    +   
Sbjct: 13  NPILRQQAQCVTDITDDKLQEFIDTLLTIAMDAKGVGIAAPQVSQSYRLFMVCSHPNPRY 72

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQI 123
             A    P V INP++++ S +     EGCLS+P  R  V R   ITV Y+D   Q HQ 
Sbjct: 73  PDAPLMEPTVMINPRLVSHSKEMVKGWEGCLSVPRIRGLVPRYQTITVEYLDRYGQLHQQ 132

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              D  +    QHELDHLNGILFID +   + D+I +K  +
Sbjct: 133 ELTD-FIGRIFQHELDHLNGILFIDRIDN-QGDLIYEKTGQ 171


>gi|17433049|sp|Q9FUZ0|DEF1A_SOLLC RecName: Full=Peptide deformylase 1A, chloroplastic; Short=PDF 1A;
           AltName: Full=Polypeptide deformylase; Flags: Precursor
 gi|11320968|gb|AAG33981.1|AF271258_1 peptide deformylase-like protein [Solanum lycopersicum]
          Length = 277

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 17/158 (10%)

Query: 11  DPILRRVSR--PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           DP+L   S+  P+E+I S+ I  +I+ M++VM +  G+GLAA QIG+  +++V++  +  
Sbjct: 96  DPVLHEPSQDIPLEEIGSERIQKIIEEMVKVMRNAPGVGLAAPQIGIPLKIIVLEDTNEY 155

Query: 67  ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                     A  + P   +V INPK+    +  +++ EGCLS+  +RA V+R   + V 
Sbjct: 156 ISYAPKDETKAQDRRPFGLLVIINPKLKKKGNKTALFFEGCLSVDGFRAVVERHLEVEVT 215

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +D N +   + A G  A  LQHE DHL+G L++D ++
Sbjct: 216 GLDRNGKAIKVDASGWQARILQHEYDHLDGTLYVDKMA 253


>gi|149182344|ref|ZP_01860822.1| peptide deformylase [Bacillus sp. SG-1]
 gi|148849963|gb|EDL64135.1| peptide deformylase [Bacillus sp. SG-1]
          Length = 161

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 82/148 (55%), Gaps = 4/148 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +P+ IL    R + + +  +   +D+M + M + DG+GLAA Q+G    + ++D+ 
Sbjct: 5   PIVTYPNEILEIECRKVTEFDKKLRKFLDDMYDTMIAADGVGLAAPQVGKDIAVAIVDIG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D       +  +NP+++    +  +  EGCLS P+   +V R  ++ V + D   +  ++
Sbjct: 65  DET---GTIEMVNPEVLEVRGE-QIDLEGCLSFPNLYGEVSRPEYVKVTFQDRKGRKLLV 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
            A+G LA  + HE+DHL+G+LF   + R
Sbjct: 121 EAEGFLARAILHEIDHLHGVLFTSKVIR 148


>gi|319442115|ref|ZP_07991271.1| peptide deformylase [Corynebacterium variabile DSM 44702]
          Length = 166

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 8/150 (5%)

Query: 8   IFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-D 65
           +F DP+LR V+  I+   +  +  L+++M E M +  G+GLAA Q+GV  R+ V D   D
Sbjct: 8   LFGDPVLRTVAENIDDPTDPTLRTLVEDMYETMDAAGGVGLAANQVGVTRRVFVYDCDGD 67

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H       +NP       +    +EGCLS+PD   DV R+A + +  +  + +     
Sbjct: 68  RGH------IVNPVWEAVGAETQTGREGCLSVPDAGGDVTRAATVHLTGVTVDGEEVDRE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             GL+A C+QHE DHL+G+++   +    R
Sbjct: 122 VTGLMARCVQHETDHLDGVMYFQRMESGTR 151


>gi|30263870|ref|NP_846247.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47529297|ref|YP_020646.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186717|ref|YP_029969.1| peptide deformylase [Bacillus anthracis str. Sterne]
 gi|65321194|ref|ZP_00394153.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis
           str. A2012]
 gi|165872270|ref|ZP_02216907.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167636413|ref|ZP_02394712.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|167641126|ref|ZP_02399381.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|170688865|ref|ZP_02880068.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|170708808|ref|ZP_02899244.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|177654890|ref|ZP_02936607.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190565855|ref|ZP_03018774.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|227813225|ref|YP_002813234.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|229601957|ref|YP_002868104.1| peptide deformylase [Bacillus anthracis str. A0248]
 gi|254683424|ref|ZP_05147284.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066]
 gi|254735906|ref|ZP_05193612.1| peptide deformylase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739846|ref|ZP_05197539.1| peptide deformylase [Bacillus anthracis str. Kruger B]
 gi|254751036|ref|ZP_05203075.1| peptide deformylase [Bacillus anthracis str. Vollum]
 gi|254756701|ref|ZP_05208730.1| peptide deformylase [Bacillus anthracis str. Australia 94]
 gi|39931068|sp|Q81WH1|DEF1_BACAN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|30258514|gb|AAP27733.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47504445|gb|AAT33121.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180644|gb|AAT56020.1| polypeptide deformylase [Bacillus anthracis str. Sterne]
 gi|164711946|gb|EDR17486.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167510906|gb|EDR86297.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|167528155|gb|EDR90942.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|170126293|gb|EDS95184.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|170667220|gb|EDT17980.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|172080401|gb|EDT65488.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190562774|gb|EDV16740.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|227002722|gb|ACP12465.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|229266365|gb|ACQ48002.1| peptide deformylase [Bacillus anthracis str. A0248]
          Length = 156

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 84/147 (57%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+GLLA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AEGLLARAIQHEIDHLHGVLFTSKVTR 148


>gi|68535326|ref|YP_250031.1| peptide deformylase [Corynebacterium jeikeium K411]
 gi|260578459|ref|ZP_05846373.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
 gi|68262925|emb|CAI36413.1| polypeptide deformylase [Corynebacterium jeikeium K411]
 gi|258603481|gb|EEW16744.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
          Length = 193

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M   P+VI  DP+L   +  ++     D+  LI +M E + + +G+GLAA Q+GV  R  
Sbjct: 1   MTIMPIVICGDPVLHNPTTKVDPSEIPDLAPLIADMYETLSAANGVGLAANQVGVNKRFF 60

Query: 60  VIDLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           V D  D    +       NP++  +    T  D+    +EGCLS+P Y     R+ +  V
Sbjct: 61  VYDCPDTERGEMRRGCVINPVLETSEIPETMPDE-EEDEEGCLSVPGYSFPTGRADWARV 119

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
             +D N +   +   G  A CLQHE+ HL+G L+ID L  R KR
Sbjct: 120 TGLDENGEEVTVEGTGFFARCLQHEVGHLDGFLYIDTLIGRWKR 163


>gi|257056762|ref|YP_003134594.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
 gi|256586634|gb|ACU97767.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
          Length = 166

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV + L  F DP+L+  + P+   +  I  L+D++L+ +      GLAA QIGV  R   
Sbjct: 1   MVMRDLRYFGDPVLKSPADPVTTFDDSIRALVDDLLDTVNLPGRAGLAAPQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP+++  S++     EGCLS+P       R+   TV+ +D   +
Sbjct: 61  YNVDGSIG-----YVLNPELVELSEEKHEVMEGCLSLPGLSFTTVRAQRATVKGVDLRNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              +   GLLA CLQHE+DHL+G+L+ID L   +R
Sbjct: 116 PVTVSGSGLLAQCLQHEVDHLDGLLYIDRLEPQQR 150


>gi|303239362|ref|ZP_07325890.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
 gi|302593148|gb|EFL62868.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
          Length = 155

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 6/136 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +V R ++ I++ I+ L+ +M + MY+ +G+GLAA Q+GVL RLVVID+ +     
Sbjct: 11  DDVLGKVCRQVDVIDNRILILLKDMADTMYAENGVGLAAPQVGVLKRLVVIDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INPKI+    +  +  EGCLS+P+   +V R   + V  ++   +   +  + LL
Sbjct: 66  GLIELINPKIVKEEGEV-LDIEGCLSVPELVGEVVRPKKVWVEALNTKGEKICLEGEDLL 124

Query: 131 ATCLQHELDHLNGILF 146
           A    HE+DHL+GILF
Sbjct: 125 ARAFCHEIDHLDGILF 140


>gi|297162299|gb|ADI12011.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 185

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 2/146 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ +  DP+L      +   ++ +  L+++M   MY+  G+GLAA Q+GV  R+ V D 
Sbjct: 14  RPMRLLGDPVLATSCEEVTAFDAALGRLVEDMYATMYAAQGVGLAANQVGVALRVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            D   R++    +NP+++  +D  +V   EGCLS+P   A   R     V  +    +  
Sbjct: 74  PDDEDRRHLGHVVNPRLVE-ADGVTVRGPEGCLSLPGIEAGTVRHDHAVVEGVTATGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
            +   G  A CLQHE DHL+G LF D
Sbjct: 133 RVEGTGFFARCLQHECDHLDGRLFTD 158


>gi|209523408|ref|ZP_03271963.1| peptide deformylase [Arthrospira maxima CS-328]
 gi|209496150|gb|EDZ96450.1| peptide deformylase [Arthrospira maxima CS-328]
          Length = 177

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           DP+LR  ++P+  I  + I +LID+++  +   +G+G+AA Q+G   R++VI  +     
Sbjct: 12  DPVLRDHAQPVANIWEARIQSLIDDLMATVIEKNGVGIAAPQVGYSDRILVIASRPSIRY 71

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P   INPKII  S++     EGCLS+P  R  V R   I V Y   +   Q  
Sbjct: 72  PAAPEMEPTAMINPKIIGKSEEMVADWEGCLSVPGIRGIVNRYQAIEVEYTSRDGHLQHR 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
              G +A   QHE DHL GI+F+D ++
Sbjct: 132 ELTGFVARIFQHEYDHLEGIIFLDRVA 158


>gi|256392284|ref|YP_003113848.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
 gi|256358510|gb|ACU72007.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
          Length = 188

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 12/164 (7%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           +F DP+L   + P+   + ++  L+ ++ E M    G GLAA QIGV  R+   ++ +  
Sbjct: 14  LFGDPVLTTPATPVVDFDKELRTLVKDLTETMLDAPGSGLAAPQIGVGLRVFTWNVDNEL 73

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            H  NP        +  SD+     EGCLSIPD     KR+  +  +    + +   +  
Sbjct: 74  GHLVNP-------TLDLSDEEQDGDEGCLSIPDLAFPCKRALRVVAKGWTMHGEPVEVEG 126

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +LA C+QHE DHL+G+LFID L R  R    KK  + ++L D
Sbjct: 127 SEMLARCIQHETDHLDGVLFIDRLDREWR----KKAMRAIRLAD 166


>gi|220906351|ref|YP_002481662.1| peptide deformylase [Cyanothece sp. PCC 7425]
 gi|219862962|gb|ACL43301.1| peptide deformylase [Cyanothece sp. PCC 7425]
          Length = 190

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 6/162 (3%)

Query: 11  DPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD---- 65
           +P+LR+ ++ + ++    I  LID++L  +   +G+GLAA Q+G  +++ ++  +     
Sbjct: 23  NPVLRQTAQFVPEVGHPQIQTLIDDLLVTVKQANGVGLAAPQVGASWQIFIVASRPNPRY 82

Query: 66  -HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            HA    P   INP+++  +D      EGCLSIP  R  V R   I V Y+D   + +  
Sbjct: 83  PHAPEMEPTAMINPRLLAHNDQQVKDWEGCLSIPGLRGLVPRYQGIEVEYLDRRGKTRRQ 142

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                +A   QHE DHLNG++F+D L      +  ++  KLV
Sbjct: 143 QLHDFVARIFQHEQDHLNGVVFLDRLETTLELVTEQEYQKLV 184


>gi|321315338|ref|YP_004207625.1| peptide deformylase [Bacillus subtilis BSn5]
 gi|320021612|gb|ADV96598.1| peptide deformylase [Bacillus subtilis BSn5]
          Length = 160

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R +    +NP+I+  S + +   EGCLS P    DV R+ ++ VR  +   +
Sbjct: 61  VDIGDDRGRID---LVNPEILEKSGEQTGI-EGCLSFPGVYGDVTRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|297195782|ref|ZP_06913180.1| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152947|gb|EDY66111.2| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 190

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 2/149 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ +  DP+L +    +     D+  L++++   MY+  G+GLAA Q+GV  R+ V D 
Sbjct: 14  RPMSLLADPVLHKPCETVTDFGPDLGRLVEDLFATMYAAQGVGLAANQVGVGSRVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            D    ++    +NP+++  +D  +V   EGCLS+P   A  +R     V  +    +  
Sbjct: 74  PDDEDVRHLGHVVNPRLVE-ADGVTVRGPEGCLSLPGLEAGTERFDRAVVEGVTWEGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            +   G  A CLQHE DHL G+++ D L+
Sbjct: 133 RVEGTGFFARCLQHECDHLEGLVYADRLT 161


>gi|152976233|ref|YP_001375750.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024985|gb|ABS22755.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98]
          Length = 158

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 84/147 (57%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M + DG+GLAA Q+GV  ++ VID+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVILLKDMYETMVAADGVGLAAPQVGVSLQVAVIDIGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPVILEKRGE-QVGPEGCLSFPGLYGEVERAEYIKVRAQNRRGKIFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 ANGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|237747725|ref|ZP_04578205.1| peptide deformylase [Oxalobacter formigenes OXCC13]
 gi|229379087|gb|EEO29178.1| peptide deformylase [Oxalobacter formigenes OXCC13]
          Length = 178

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   D  L R S P+++ N+  +N LI++M E MY+ DG GLAA QIG+  R+V
Sbjct: 1   MAVRKILKMGDSRLLRESEPVKQFNTPELNQLIEDMYETMYAADGAGLAAPQIGINQRVV 60

Query: 60  VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +    ++    +       V INP I   SD+     EGCLSIP  R  V R A I    
Sbjct: 61  IFGYDENNRYPDAPPVPKTVLINPVIRPLSDEIDAGWEGCLSIPGMRGIVPRWAKIHYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
            D         ADG  A  +QHE DHL+GIL+
Sbjct: 121 FDQFGNKISRNADGFHARVVQHECDHLDGILY 152


>gi|328907667|gb|EGG27431.1| polypeptide deformylase [Propionibacterium sp. P08]
          Length = 200

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + +P+L   +RPI + + D+  LI +M   M + DG+GLAA Q+GV   L V    D  +
Sbjct: 27  WGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVYACPDADN 86

Query: 69  RKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +   F NP ++T  +          EGCLS P     + R    T    D       +
Sbjct: 87  VVHHGAFCNP-VVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPWGNDITV 145

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              G  A CLQHE DH NG++F D LS+  R  + ++   +  L
Sbjct: 146 TGTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQHDAVAHL 189


>gi|262368804|ref|ZP_06062133.1| peptide deformylase [Acinetobacter johnsonii SH046]
 gi|262316482|gb|EEY97520.1| peptide deformylase [Acinetobacter johnsonii SH046]
          Length = 161

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 6/135 (4%)

Query: 23  KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKNPMVFI 76
           + NSD +M L   M+  M    G+G+AA Q+ +  R++++  + +     A   + +V +
Sbjct: 26  EFNSDWLMQLASAMIATMLERSGVGIAAPQVYISKRVIIVASRPNLRYPDAPEMDAVVMV 85

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP+I+ FS   ++ +EGCLS+P+ R  V+R+  I V Y     +      +G  A  +QH
Sbjct: 86  NPEILEFSQATTLGEEGCLSVPNERGQVQRAQSIKVLYHTLTGEVMESTFEGFPARIVQH 145

Query: 137 ELDHLNGILFIDHLS 151
           E+DHLNGILF+D LS
Sbjct: 146 EIDHLNGILFVDRLS 160


>gi|313836783|gb|EFS74497.1| peptide deformylase [Propionibacterium acnes HL037PA2]
 gi|314929809|gb|EFS93640.1| peptide deformylase [Propionibacterium acnes HL044PA1]
 gi|314972238|gb|EFT16335.1| peptide deformylase [Propionibacterium acnes HL037PA3]
          Length = 209

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 3/163 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + +P+L   +RPI + + D+  LI +M   M + DG+GLAA Q+GV   L V    D  +
Sbjct: 36  WGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVYACPDADN 95

Query: 69  RKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             +   F NP +              EGCLS P     + R    T    D       + 
Sbjct: 96  VVHHGAFCNPVVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPWGNDITVT 155

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             G  A CLQHE DH NG++F D LS+  R  + ++   +  L
Sbjct: 156 GTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQHDAVAHL 198


>gi|300859237|ref|YP_003784220.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686691|gb|ADK29613.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206928|gb|ADL11270.1| Peptide deformylase [Corynebacterium pseudotuberculosis C231]
 gi|302331492|gb|ADL21686.1| N-formylmethionyl-tRNA deformylase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277182|gb|ADO27081.1| N-formylmethionyl-tRNA deformylase [Corynebacterium
           pseudotuberculosis I19]
          Length = 197

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 81/166 (48%), Gaps = 13/166 (7%)

Query: 1   MVKKPLVIFPDPILR----RVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  +P+VI  DP+L      V+ PI+  + ++  LI +M E M    G+GLAA QIGV  
Sbjct: 1   MTVRPIVIHGDPVLHNPTAEVTEPID--SPELQELIADMYETMAVAHGVGLAANQIGVGK 58

Query: 57  RLVVI---DLQDHAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           RL V    D Q H HR    NP++       T   D     EGCLS+P       R+ + 
Sbjct: 59  RLFVFNCPDDQGHMHRGCVINPILETTEIPQTMPSDDGSDDEGCLSVPGEGFPTGRATWA 118

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
            V  +D +         G LA C QHE+ HL+G L+ D L  R KR
Sbjct: 119 KVTGLDEHGNPVSYEGTGFLARCFQHEVGHLDGFLYTDTLVGRYKR 164


>gi|118479089|ref|YP_896240.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam]
 gi|118418314|gb|ABK86733.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam]
          Length = 156

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPNEVLETPCERVMNFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|255553123|ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus communis]
 gi|223543236|gb|EEF44768.1| polypeptide deformylase, putative [Ricinus communis]
          Length = 266

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+L   +R ++  +I S+ I  +ID+M++VM    G+GLAA QIGV  R++V++     
Sbjct: 85  DPVLHEPAREVDPDEIGSERIQKIIDDMVKVMRRAPGVGLAAPQIGVPLRIIVLEDTTEY 144

Query: 63  ------LQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                  +  A  + P   +V +NPK+    +  +++ EGCLS+  +RA V+RS  + V 
Sbjct: 145 IGYAPKEETKAQDRRPFDLLVILNPKLKKKGNRTALFFEGCLSVDGFRAVVERSLEVEVS 204

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D + Q   + A G  A  LQHE DHL+G L++D +
Sbjct: 205 GLDRSGQPIKVDASGWQARILQHECDHLDGTLYVDKM 241


>gi|312129572|ref|YP_003996912.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
 gi|311906118|gb|ADQ16559.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
          Length = 193

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 15/164 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++ +   IL++    IEK   ++  LI +M E M + +G GLA+ QIG+  RL ++
Sbjct: 1   MKRPILAYGHSILKQKCNDIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60

Query: 62  DL---------QDHA--HRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           D          QD      KN      +FIN KII  S +     EGCLSIP+    VKR
Sbjct: 61  DSKTTFENLDEQDQGIYFEKNDSGIKEIFINAKIIERSAELWEDDEGCLSIPELSQKVKR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              IT+ Y + + + Q     G  A  +QHE DH  GIL++D+L
Sbjct: 121 PWTITIAYYNKDFELQRKTFSGTTARMIQHEYDHTEGILYLDYL 164


>gi|126660127|ref|ZP_01731246.1| polypeptide deformylase [Cyanothece sp. CCY0110]
 gi|126618570|gb|EAZ89320.1| polypeptide deformylase [Cyanothece sp. CCY0110]
          Length = 169

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 8/148 (5%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           +PILR+ ++ +  I  + +  LID +L       G+G+AA Q+   YRL ++    +   
Sbjct: 13  NPILRQQAQYVTDITDEKLQQLIDTLLTTAIDAKGVGIAAPQVSQSYRLFIVCSHPNSRY 72

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQI 123
             A    P V INP +++ S++     EGCLS+P  R  V R   ITV Y+D   + HQ 
Sbjct: 73  PDAPSMEPTVMINPCLVSHSEEMVKGWEGCLSVPGVRGLVSRYQKITVEYLDRYGKLHQQ 132

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
            + D  +A   QHELDHLNGILFID ++
Sbjct: 133 EFTD-FVARIFQHELDHLNGILFIDRVN 159


>gi|284052203|ref|ZP_06382413.1| peptide deformylase [Arthrospira platensis str. Paraca]
 gi|291566279|dbj|BAI88551.1| peptide deformylase [Arthrospira platensis NIES-39]
          Length = 177

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 6/147 (4%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           DP+LR  ++P+  I    I +LID+++  +   +G+G+AA Q+G   R++VI  +     
Sbjct: 12  DPVLRDHAQPVANIWEPRIQSLIDDLMATVIEKNGVGIAAPQVGYSDRILVIASRPSIRY 71

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P   INPKII  SD+     EGCLS+P  R  V R   I V Y   +   +  
Sbjct: 72  PAAPEMEPTAMINPKIIGKSDEMVADWEGCLSVPGIRGIVNRYQAIEVEYTSRDGHLEHR 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
              G +A   QHE DHL GI+F+D ++
Sbjct: 132 ELTGFVARIFQHEYDHLEGIIFLDRVA 158


>gi|16078635|ref|NP_389454.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309447|ref|ZP_03591294.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313772|ref|ZP_03595577.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318696|ref|ZP_03599990.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322967|ref|ZP_03604261.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|2499922|sp|P94462|DEF1_BACSU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|1772499|emb|CAA71349.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2337801|emb|CAA74262.1| putative Def protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633944|emb|CAB13445.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 160

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ D   R +    +NP+I+  S + +   EGCLS P+   DV R+ ++ VR  +   +
Sbjct: 61  VEIGDDRGRID---LVNPEILEKSGEQTGI-EGCLSFPNVYGDVTRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|332295842|ref|YP_004437765.1| Peptide deformylase [Thermodesulfobium narugense DSM 14796]
 gi|332178945|gb|AEE14634.1| Peptide deformylase [Thermodesulfobium narugense DSM 14796]
          Length = 165

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 8/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K+ ++  P+ +LR+ S P+ + + ++ +L++ M  +M S +G+GLAA Q+G L RL +
Sbjct: 2   ICKRKIITHPNSLLRKRSLPVLQFDKNLESLVEEMEYLMISNNGVGLAAPQVGELSRLFI 61

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             + D     N  V INP+II       V  EGCLS+P     V+R+  + V+  +    
Sbjct: 62  YKIDD-----NLQVVINPEIIEKVGS-EVDVEGCLSVPGVFGPVERAFKVIVQAQNIYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK--RDMITKKMSKL 165
             I+  +G  A  +QHE DHLNG LFID    L+   +   K+  KL
Sbjct: 116 TIILNKEGYEARVIQHEFDHLNGDLFIDKAEYLETAEERAKKQKEKL 162


>gi|213618841|ref|ZP_03372667.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 103

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 70/98 (71%), Gaps = 3/98 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +  +
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--N 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           R   +V INP+++  S +  + +EGCLSIP+ RA V R
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPR 103


>gi|47569494|ref|ZP_00240174.1| polypeptide deformylase [Bacillus cereus G9241]
 gi|47553823|gb|EAL12194.1| polypeptide deformylase [Bacillus cereus G9241]
          Length = 156

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPNEVLETSCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|68171495|ref|ZP_00544878.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657592|ref|YP_507728.1| putative polypeptide deformylase [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999078|gb|EAM85746.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599049|gb|ABD44518.1| putative polypeptide deformylase [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 194

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 16/161 (9%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------QD 65
           L  +S PIEKI+ +I+ L ++M++VM  +  +GL+AVQ+G   R+ +I++        QD
Sbjct: 15  LHAISHPIEKIDQEIIALANDMMKVMEHSKTVGLSAVQLGNHSRMFIINMFSGLFDIAQD 74

Query: 66  -------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDC 117
                  H+     M+ INP++++FS +     EGC S   Y   ++ R   + +RY D 
Sbjct: 75  IKVLSGHHSLHGKNMICINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDLRYTDL 134

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                I+   G L+ C+QHELDHLNGIL  + +  +K + +
Sbjct: 135 LGNECIVRVYGWLSRCIQHELDHLNGILLANVVDNIKNNCV 175


>gi|75911263|ref|YP_325559.1| formylmethionine deformylase [Anabaena variabilis ATCC 29413]
 gi|75704988|gb|ABA24664.1| Formylmethionine deformylase [Anabaena variabilis ATCC 29413]
          Length = 179

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 10/155 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++   +P LR+ +  +E I ++ I  LID+++  +   +G+G+A+ Q+   YRL ++  
Sbjct: 7   PIIQLGNPTLRQKAAWVENIHDAAIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIVAS 66

Query: 64  QD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD-- 116
           +      HA    P   INPKI+  S +     EGCLS+P  R  V R   I V Y D  
Sbjct: 67  RPNPRYPHAPVMEPTAMINPKIVGSSTEIVKGWEGCLSVPGIRGLVPRHQAIEVEYKDRY 126

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            N Q Q +     +A   QHE DHL+G+LFID + 
Sbjct: 127 GNLQKQTL--TDFVARIFQHEFDHLDGVLFIDRVE 159


>gi|116515231|ref|YP_802860.1| hypothetical protein BCc_313 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285373|sp|Q057D2|DEF_BUCCC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|58384664|gb|AAW72679.1| polypeptide deformylase [Buchnera aphidicola (Cinara cedri)]
 gi|116257085|gb|ABJ90767.1| polypeptide deformylase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 149

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 88/143 (61%), Gaps = 2/143 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           FPD  LR +S+PI+ IN     +I +M + MY+ +GIGLAA QI +L +++VI       
Sbjct: 9   FPDYRLRLLSKPIKIINKKTKKIIYDMFDTMYANNGIGLAAPQINILKQIIVIS--SLKP 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
             + +V INP I+  +  +    EGCLSIP   A +KRS+ I ++ ++   +   + A  
Sbjct: 67  TMSELVLINPVILKKNKKYINTIEGCLSIPKKTAKIKRSSCIKIQAINTYGKSFTLTAKS 126

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LL+ C+QHE+DHL G LFID+++
Sbjct: 127 LLSICIQHEIDHLIGKLFIDYIN 149


>gi|145594886|ref|YP_001159183.1| peptide deformylase [Salinispora tropica CNB-440]
 gi|145304223|gb|ABP54805.1| peptide deformylase [Salinispora tropica CNB-440]
          Length = 167

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  +P+ I  DP+LR  + P+   ++D+  L+ ++++ +    G  G+AA QIGV  ++ 
Sbjct: 1   MTMRPIRIIGDPVLRTPAAPVTSFDADLRALVADLMDTLLGAPGRAGVAAPQIGVSAQVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D     HR +    INP  +   DD     EGCLSIP       R+   T R MD + 
Sbjct: 61  VYDAD--GHRGH---LINP-TLELGDDRQDDDEGCLSIPGLYFPTPRAMRATARGMDQHG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Q   I   G LA  LQHE DHL G L++D L
Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTL 145


>gi|220912431|ref|YP_002487740.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
 gi|219859309|gb|ACL39651.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
          Length = 204

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 78/150 (52%), Gaps = 9/150 (6%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-H 66
           I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA QIGV  R+    +    
Sbjct: 8   IIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQIGVSKRVFTYRIDGVE 67

Query: 67  AHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            H       INP ++  SDD+   + EGCLSIP     V+R     V  +D +     + 
Sbjct: 68  GH------IINP-VLENSDDYQPDHVEGCLSIPGLGFPVRRFRATRVTGVDMHGNPVSLE 120

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +G+LA C QHE DHL+G+L+ D L    R
Sbjct: 121 GEGMLARCFQHENDHLDGVLYTDRLEGEDR 150


>gi|255630300|gb|ACU15506.1| unknown [Glycine max]
          Length = 221

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 72/136 (52%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDP LR  ++ I   +  +  L+  M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 77  IVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVG 136

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP++  +S   +++ EGCLS P   ADVKR   + +     N     + 
Sbjct: 137 EHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARGINGTMFSVN 196

Query: 126 ADGLLATCLQHELDHL 141
              L A   QHE DHL
Sbjct: 197 LSDLPARIFQHEFDHL 212


>gi|42782959|ref|NP_980206.1| peptide deformylase [Bacillus cereus ATCC 10987]
 gi|49478423|ref|YP_037928.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141621|ref|YP_085208.1| peptide deformylase [Bacillus cereus E33L]
 gi|196035868|ref|ZP_03103270.1| peptide deformylase [Bacillus cereus W]
 gi|196038865|ref|ZP_03106173.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|206976769|ref|ZP_03237673.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217961287|ref|YP_002339855.1| peptide deformylase [Bacillus cereus AH187]
 gi|222097312|ref|YP_002531369.1| peptide deformylase [Bacillus cereus Q1]
 gi|225865848|ref|YP_002751226.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|228916504|ref|ZP_04080070.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228928915|ref|ZP_04091947.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935181|ref|ZP_04098008.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947586|ref|ZP_04109876.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228987010|ref|ZP_04147136.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229092910|ref|ZP_04224044.1| Peptide deformylase 1 [Bacillus cereus Rock3-42]
 gi|229123381|ref|ZP_04252585.1| Peptide deformylase 1 [Bacillus cereus 95/8201]
 gi|229140513|ref|ZP_04269068.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26]
 gi|229157443|ref|ZP_04285521.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342]
 gi|229174533|ref|ZP_04302065.1| Peptide deformylase 1 [Bacillus cereus MM3]
 gi|229197978|ref|ZP_04324692.1| Peptide deformylase 1 [Bacillus cereus m1293]
 gi|254721399|ref|ZP_05183188.1| peptide deformylase [Bacillus anthracis str. A1055]
 gi|301055358|ref|YP_003793569.1| peptide deformylase [Bacillus anthracis CI]
 gi|42738886|gb|AAS42814.1| polypeptide deformylase [Bacillus cereus ATCC 10987]
 gi|49329979|gb|AAT60625.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51975090|gb|AAU16640.1| peptide deformylase [Bacillus cereus E33L]
 gi|195991517|gb|EDX55483.1| peptide deformylase [Bacillus cereus W]
 gi|196030588|gb|EDX69187.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|206745079|gb|EDZ56482.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217064571|gb|ACJ78821.1| peptide deformylase [Bacillus cereus AH187]
 gi|221241370|gb|ACM14080.1| peptide deformylase [Bacillus cereus Q1]
 gi|225786088|gb|ACO26305.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|228585457|gb|EEK43561.1| Peptide deformylase 1 [Bacillus cereus m1293]
 gi|228609093|gb|EEK66383.1| Peptide deformylase 1 [Bacillus cereus MM3]
 gi|228626170|gb|EEK82919.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342]
 gi|228643074|gb|EEK99350.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26]
 gi|228660157|gb|EEL15793.1| Peptide deformylase 1 [Bacillus cereus 95/8201]
 gi|228690532|gb|EEL44315.1| Peptide deformylase 1 [Bacillus cereus Rock3-42]
 gi|228772788|gb|EEM21228.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228812106|gb|EEM58437.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824546|gb|EEM70351.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830722|gb|EEM76327.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843083|gb|EEM88165.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|300377527|gb|ADK06431.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI]
 gi|324327765|gb|ADY23025.1| peptide deformylase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 156

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|297564644|ref|YP_003683616.1| peptide deformylase [Meiothermus silvanus DSM 9946]
 gi|296849093|gb|ADH62108.1| peptide deformylase [Meiothermus silvanus DSM 9946]
          Length = 195

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 17/180 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61
           P+ ++ DP+LR+ +  ++   S+I  L +NM E M+   G+GLAA Q+G   RL V    
Sbjct: 4   PIRLYGDPVLRKRASSVKDF-SEIPRLAENMFETMFEARGVGLAAPQVGRSERLFVFAEY 62

Query: 62  ----------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFI 110
                     +       KN  V +NP  IT+     +  EGCLSIP  Y  +V R   I
Sbjct: 63  VDAEDEEEGEEADLKTRVKNQWVMVNP-AITYRAGQQISTEGCLSIPGLYSDEVPRDLQI 121

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSKLVQLR 169
            V Y +   + +    +G LA  +QHELDHL+G LF + L + LK   + +   +L +++
Sbjct: 122 RVEYQNELGEKKTQEFEGYLAVVVQHELDHLDGTLFFERLPKDLKAAFLEEHRHELAEMQ 181


>gi|229031497|ref|ZP_04187497.1| Peptide deformylase [Bacillus cereus AH1271]
 gi|228729786|gb|EEL80766.1| Peptide deformylase [Bacillus cereus AH1271]
          Length = 156

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIDD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL G+LF   ++R
Sbjct: 122 AEGFLARAIQHEIDHLQGVLFTSKVTR 148


>gi|329576776|gb|EGG58269.1| peptide deformylase [Enterococcus faecalis TX1467]
          Length = 131

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 4/116 (3%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M E M + DGIGLAA QIG   ++ VI++ + + R      INP II      S+  EGC
Sbjct: 1   MYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGR---FELINPVIIE-KKGTSIDVEGC 56

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           LSIP+    V+R+  +TVRY D   +   + A G LA   QHE+DHLNG LFID +
Sbjct: 57  LSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQHEIDHLNGELFIDKM 112


>gi|332654337|ref|ZP_08420081.1| peptide deformylase [Ruminococcaceae bacterium D16]
 gi|332517423|gb|EGJ47028.1| peptide deformylase [Ruminococcaceae bacterium D16]
          Length = 152

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 7/139 (5%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DPILR+  + + K++  I  L+D+ML+ ++ T+ G  LAA Q+GVL RLVVID  D    
Sbjct: 11  DPILRKKCKAVLKVDDKIRQLLDDMLDTLHETENGAALAANQVGVLKRLVVIDFND---- 66

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +  +NPK+I+ S       EGCLS P+      R   +T++ ++   +  I+  +  
Sbjct: 67  -TRLKLVNPKMISQSG-VQECVEGCLSFPNRFVKTIRPQKVTIQALNEYGEEIIVDGEDE 124

Query: 130 LATCLQHELDHLNGILFID 148
           +A C  HEL+HL+G++F+D
Sbjct: 125 MAKCFCHELEHLDGMIFLD 143


>gi|148240675|ref|YP_001226062.1| peptide deformylase [Synechococcus sp. WH 7803]
 gi|147849214|emb|CAK24765.1| Peptide deformylase [Synechococcus sp. WH 7803]
          Length = 177

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 12/149 (8%)

Query: 12  PILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           P LR+ +R IE        +  LID++LE   +  G GLAA QI   +R+VV+ +   A+
Sbjct: 12  PALRQRARDIEDEVFGTQQLQTLIDDLLETKAARSGAGLAAPQIDEPWRVVVVGMG--AN 69

Query: 69  RKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            + P        V INP+I   S+  S   EGCLS+P  R +V+R   I + + D N   
Sbjct: 70  PRYPEAPPVPERVLINPEITPLSEATSAGWEGCLSVPGLRGEVERWQRIHLSWRDPNGGW 129

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
                +G  A  +QHE DHL+G+LF D L
Sbjct: 130 HHEELEGFHARVVQHECDHLDGVLFPDRL 158


>gi|308173535|ref|YP_003920240.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7]
 gi|307606399|emb|CBI42770.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7]
 gi|328553532|gb|AEB24024.1| peptide deformylase [Bacillus amyloliquefaciens TA208]
 gi|328911676|gb|AEB63272.1| polypeptide deformylase [Bacillus amyloliquefaciens LL3]
          Length = 160

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKIVTHPAEVLETPAEEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R +    +NP I+  S +  +  EGCLS P    +V R  ++ V+  D   +
Sbjct: 61  VDIGEESGRID---LVNPVILEKSGE-QIGVEGCLSFPGVYGEVTRPDYVKVKAYDRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I+ A+G LA  +QHE+DHL GILF   ++
Sbjct: 117 PFIVEAEGFLARAIQHEMDHLEGILFTSKIT 147


>gi|242046748|ref|XP_002461120.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor]
 gi|241924497|gb|EER97641.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor]
          Length = 193

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH 66
           DP+L   ++   P +  +  +  +ID M++VM    G+GLAA QIGV  R++V+ D Q++
Sbjct: 12  DPVLHEPAQEVAPGDVRSEKVQGIIDRMVDVMRKAPGVGLAAPQIGVPLRIIVLEDTQEY 71

Query: 67  ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                     A  + P   ++ INPKI   S   +++ EGCLS+  YRA V+R   + V 
Sbjct: 72  ISYAPKKEIEAQDRRPFDLLIIINPKIKNTSKRTALFFEGCLSVDGYRAVVERHLDVEVS 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D N     + A G  A  LQHE DHL G L++D +
Sbjct: 132 GLDRNGSAIKVQASGWQARILQHECDHLEGTLYVDRM 168


>gi|331004325|ref|ZP_08327800.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411391|gb|EGG90806.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 169

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L +  + ++ +N     LI++M++ M   +G+GLAA QIGVL R+VV
Sbjct: 1   MAIRAIRVIGDSVLNKKCKEVKAVNDRTKVLIEDMIDTMREANGVGLAAPQIGVLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+++     +N  V INP I+    +   Y EGCLS+P     VKR   + V+  D +  
Sbjct: 61  IEIEP----ENVYVLINPVILEQYGEQEGY-EGCLSVPGKSGIVKRPNHVKVKAFDIDMN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA  + HE  HL G L++D
Sbjct: 116 EYTLEGEGLLARAICHECAHLEGELYVD 143


>gi|206895565|ref|YP_002246726.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265]
 gi|206738182|gb|ACI17260.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265]
          Length = 171

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 7/150 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQD 65
           + PD +LR  ++ ++    +   ++++M  +M   +  G+GLAA Q+G+  R VVIDL D
Sbjct: 5   VIPDKMLRAKAQKVKSFTEEDRRIVEDMFRLMKENEVEGVGLAAPQVGISKRFVVIDL-D 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H     V INP+      +     EGCLS+P     V+R   I V + +   +   + 
Sbjct: 64  EFHE----VLINPRWEPLGKEKEEDIEGCLSVPGVYGPVERFKKIKVSFTNLYGEKITLK 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            DG+L+  +QHE+DHL+G+LFID ++   R
Sbjct: 120 LDGMLSRVVQHEVDHLDGVLFIDKITDWDR 149


>gi|220912934|ref|YP_002488243.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
 gi|219859812|gb|ACL40154.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
          Length = 190

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 5/151 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  R+ V    
Sbjct: 5   PITIWGEPVLHRRASEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFVYKYA 64

Query: 65  DHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +        V +NP     KI   + D    +EGCLS P  +  +KR+ +  V   D N 
Sbjct: 65  NDDDAPASGVVVNPVLTLSKISGAAPDPDEEEEGCLSFPGDQYPLKRAEWARVEGFDGNG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Q     A G  A  +QHE DHL+G L+++ L
Sbjct: 125 QPVKFEATGWFARVIQHEYDHLDGKLYVNRL 155


>gi|300784243|ref|YP_003764534.1| polypeptide deformylase [Amycolatopsis mediterranei U32]
 gi|299793757|gb|ADJ44132.1| polypeptide deformylase [Amycolatopsis mediterranei U32]
          Length = 166

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 11/170 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L  F DPIL+ V  P+   +  +  L+ ++++ +      GLAA QIGV  R+  
Sbjct: 1   MAMRELRYFGDPILKSVCDPVTVFDEKLEALVRDLVDSVKPAGRAGLAAPQIGVGLRVFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+            +NP+I+  S++     EGCLS+P+     +R+    VR +D + +
Sbjct: 61  YDVAGLTG-----YVVNPEIVELSEETHEINEGCLSVPELWFPTRRAMHAKVRGVDVHNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +  + +LA CLQHE DHL+G+L++D L+        +K S L + RD
Sbjct: 116 PIEVEGEDVLAQCLQHETDHLDGVLYLDRLT------AERKKSALREARD 159


>gi|300780403|ref|ZP_07090259.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
 gi|300534513|gb|EFK55572.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
          Length = 200

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+VI  DP+L   + P+ +  +++  LI +M E M + +G+GLAA QIGV  RL V   
Sbjct: 14  RPIVIHGDPVLHTPTEPVTEPVAELKELIADMHETMDAANGVGLAANQIGVNKRLFVYHC 73

Query: 64  QDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D    +     NP++  +    T   D     EGCLS+P       R+ +  V  +D N
Sbjct: 74  PDGDTMRRGTVINPVLETSDIPKTMPKDDGEDDEGCLSVPGESFPTARAEWAKVTGLDEN 133

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRD 156
                +   G  A CLQHE+ HL+G +++D L+ R KR+
Sbjct: 134 GDPVEVEGTGFFARCLQHEVGHLDGYVYLDVLTGRYKRE 172


>gi|269794722|ref|YP_003314177.1| peptide deformylase [Sanguibacter keddieii DSM 10542]
 gi|269096907|gb|ACZ21343.1| peptide deformylase [Sanguibacter keddieii DSM 10542]
          Length = 162

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I  I+  +  L++++L+ +      GLAA QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEITVIDDRVRGLVEDLLDTVNDDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ D          +NPKI+  S+D +    EGCLS+P+     +R+ +  V   D + 
Sbjct: 61  WNIDDEIG-----YVLNPKIVELSEDEYQDGDEGCLSVPNLWYPTERAWYARVEGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              ++    L+A CLQHE+DHL+G L++D L +  R
Sbjct: 116 NKVVVEGTELMARCLQHEVDHLDGYLYLDRLDKAVR 151


>gi|229162803|ref|ZP_04290760.1| Peptide deformylase 1 [Bacillus cereus R309803]
 gi|228620685|gb|EEK77554.1| Peptide deformylase 1 [Bacillus cereus R309803]
          Length = 156

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPAILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|323356569|ref|YP_004222965.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
 gi|323272940|dbj|BAJ73085.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
          Length = 163

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  S PIE I+  I  L+ ++L+ +      G+AA QIGV  R   
Sbjct: 1   MTVRPIRLFGDPVLRAPSAPIETIDDGIHALVRDLLDTVEPPGRAGVAAPQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP ++    +  +  EGCLS+P    +  R  +  V  +D +  
Sbjct: 61  YNIDGDIG-----YVLNPVLVETRGEPQLVGEGCLSVPGLWHEATRYPWAKVVGIDLDGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             ++  +GLLA  LQHE DHL+G+L+   LSRL  D   + M ++
Sbjct: 116 EVVLEGEGLLAQALQHETDHLDGMLY---LSRLPADTRREAMRQI 157


>gi|196047434|ref|ZP_03114646.1| peptide deformylase [Bacillus cereus 03BB108]
 gi|229186107|ref|ZP_04313276.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1]
 gi|196021742|gb|EDX60437.1| peptide deformylase [Bacillus cereus 03BB108]
 gi|228597283|gb|EEK54934.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1]
          Length = 156

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVRHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|119963025|ref|YP_947573.1| peptide deformylase [Arthrobacter aurescens TC1]
 gi|119949884|gb|ABM08795.1| peptide deformylase [Arthrobacter aurescens TC1]
          Length = 190

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 9/146 (6%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-H 66
           I  DP+LR V+ P+     ++  L+ +M E M   +G GLAA Q+GV  R+    +    
Sbjct: 8   IIGDPVLRTVADPVTDFGPELAKLVADMTETMEDVEGAGLAAPQVGVSQRVFTYRIGGVE 67

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            H       INP ++  S+D+   + EGCLSIP     V+R        +D N     + 
Sbjct: 68  GH------IINP-VLENSEDYQPDEVEGCLSIPGLGFPVRRYRATRATGVDLNGNPVSVE 120

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
           A+G+LA C QHE DHL+G+L+ D L 
Sbjct: 121 AEGMLARCFQHETDHLDGVLYTDRLE 146


>gi|256394158|ref|YP_003115722.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
 gi|256360384|gb|ACU73881.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
          Length = 225

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           + +  + +L R  R + +  + +++ L+D+M   MY   G+GLAA Q+GV  R+ V D  
Sbjct: 37  VTVVGEEVLHRPCREVAEFGTAELLQLVDDMFLTMYVAQGVGLAANQVGVDLRVFVYDCV 96

Query: 65  DHAHRKNPMVFINPKIITFSDDFS----VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D    ++    +NPK+    +         QEGCLS+P    ++ R     +  +D + +
Sbjct: 97  DDDGARHVGHIVNPKLDRTPEGGQRRLVEAQEGCLSVPGPTRELPRYDHAVLHGVDVHGE 156

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             ++  +G  A CLQHE DHL G L+ID +++  R  + ++M+++ 
Sbjct: 157 PLVLEGEGYFARCLQHETDHLEGTLYIDRMNKKTRRGVLEEMAEVA 202


>gi|86609579|ref|YP_478341.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558121|gb|ABD03078.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 174

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 11/157 (7%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           DPIL +V+ P+ +  +  + +LI+ ML  +    G+GLAA Q+G L +++++  + +   
Sbjct: 10  DPILTQVAEPVTEFKTPALQDLIEGMLATLKEAQGVGLAAPQVGSLLQVLIVASRPNPRY 69

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA-QHQI 123
             A +  P+V +NP+++  S +  +  EGCLS+P+ R  V R+  + V Y      Q ++
Sbjct: 70  PEAPQMQPLVMVNPRLLACSSEQVLGWEGCLSVPNCRGLVARAREVEVEYYTPEGVQQRV 129

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           ++ D   A   QHE DHL G +F   L R  R ++T+
Sbjct: 130 VWQD-FPARIFQHEYDHLMGRVF---LQRQPRQLLTE 162


>gi|314923773|gb|EFS87604.1| peptide deformylase [Propionibacterium acnes HL001PA1]
          Length = 200

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + + +L   +RP+ + + D+  L+ +M   M +TDG+GLAA Q+GV   L V    D  +
Sbjct: 27  WGESVLHAQTRPVTEFDEDLTTLVRDMFATMNATDGVGLAATQVGVDLSLFVYICPDANN 86

Query: 69  RKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +   F NP ++T  +          EGCLS P     + R    T    D       +
Sbjct: 87  VVHHGAFCNP-VVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGNDITV 145

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              G  A CLQHE DH NGI+F D LS+  R  + ++   +  L
Sbjct: 146 TGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189


>gi|262279936|ref|ZP_06057721.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202]
 gi|262260287|gb|EEY79020.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202]
          Length = 160

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 18/151 (11%)

Query: 13  ILRRVSRPIE--KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           IL+ ++ P+   ++NSD +  L   M   M   +G+G+AA Q+ +  R++++     A R
Sbjct: 14  ILKLIAAPVSSSELNSDWLYGLAAAMHATMLERNGVGIAAPQVYISKRVIIV-----ASR 68

Query: 70  KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            NP          +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + V+Y     
Sbjct: 69  PNPRYPDAPEMDAVVMVNPEILEFSSETLLGEEGCLSVPDERGQVERAEMVKVKYSTLQG 128

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +       G  A  +QHE+DHLNG+LF++ +
Sbjct: 129 EFVETIFHGFPARIVQHEVDHLNGVLFVERI 159


>gi|326489213|dbj|BAK01590.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 259

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH 66
           DP+L   ++   P +  +  I ++ID M+ VM    G+GLAA QIGV  +++V+ D Q++
Sbjct: 78  DPVLHEPAQEVSPGDVPSEKIQDIIDQMIAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEY 137

Query: 67  ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                     A  + P   +V INPK+   S   + + EGCLS+  YRA V+R   + V 
Sbjct: 138 ISYVSKEDIDAQDRCPFDLLVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLDVEVS 197

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D N +   + A G  A  LQHE DHL G L++D +
Sbjct: 198 GLDRNGRPMKVEASGWQARILQHECDHLEGTLYVDKM 234


>gi|163792491|ref|ZP_02186468.1| Formylmethionine deformylase [alpha proteobacterium BAL199]
 gi|159182196|gb|EDP66705.1| Formylmethionine deformylase [alpha proteobacterium BAL199]
          Length = 183

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K +V   DP+LR V+  + +     I  LID+M+  +    GIGLAA QIG+L R++
Sbjct: 1   MTSKSIVRVGDPVLRSVAALVPDPTAPAIRQLIDDMVASLEEAGGIGLAAPQIGILQRVL 60

Query: 60  VIDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +  + D      P          INP +    D  ++  EGCLSIP  R +V R   + V
Sbjct: 61  IFWVPDARATNEPDDGPCPLTALINPVLEPLDDRMALGWEGCLSIPGLRGEVPRHLRMRV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
                  +       G  A  LQHE+DHL+GIL++D ++   R   T+++
Sbjct: 121 TATTPEGEPFEAIVAGTRARVLQHEVDHLDGILYLDRMTDFTRFGFTEEV 170


>gi|226729275|sp|B6RGY0|DEF1A_ORYSJ RecName: Full=Peptide deformylase 1A, chloroplastic; Short=OsPDF1A;
           Short=PDF 1A; Flags: Precursor
 gi|164633052|gb|ABY64739.1| peptide deformylase 1A [Oryza sativa Japonica Group]
          Length = 260

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH 66
           DP+L   ++   P +  +  +  +ID M+ VM    G+GLAA QIGV  +++V+ D Q++
Sbjct: 79  DPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEY 138

Query: 67  ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                     A  + P   +V INPK+ T S   +++ EGCLS+  YRA V+R   + V 
Sbjct: 139 ISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVS 198

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D N +   + A G  A  LQHE DHL G L++D +
Sbjct: 199 GLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTM 235


>gi|325119980|emb|CBZ55533.1| Peptide deformylase, related [Neospora caninum Liverpool]
          Length = 374

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 2/148 (1%)

Query: 3   KKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           KK +++ P P+LR  S P  + +  +   +   +  +MY   GIGLAA Q+G+  +++V 
Sbjct: 223 KKEVLVAPHPLLRLPSHPEADWMAKETKAIARELFAIMYRDGGIGLAAPQVGLSLQMIVW 282

Query: 62  DLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +            VF+NP+I++ S       EGCLS+P   A V+R     VRY      
Sbjct: 283 NPTGGFREVSQERVFLNPRILSLSGPLVSDVEGCLSVPGVFAPVERPMHARVRYTSLEGD 342

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +   GL A  +QHE+DHL+GILF+D
Sbjct: 343 QHEVNLSGLEARVVQHEIDHLHGILFVD 370


>gi|299139618|ref|ZP_07032792.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
 gi|298598546|gb|EFI54710.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
          Length = 191

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 17/162 (10%)

Query: 6   LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   +P+LR  S+ + K   ++  I NLID M E +    G+GLAA Q+G   +L VI+
Sbjct: 5   IVTVGEPVLRATSQMLSKEQILSPSIQNLIDYMRETVRDAPGVGLAAPQVGESLQLAVIE 64

Query: 63  -------------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                        +++      P  V +NP +    +  + + EGCLS+P + A V R+ 
Sbjct: 65  DKAEYHKNLTEAEMKERGRAAVPFHVLVNPVLEVRGESTATFFEGCLSLPGFTALVPRAK 124

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + V  +D   + ++I A G  A  LQHE+DHL+G L+ID +
Sbjct: 125 EVRVTGLDHRGEPRVIEASGWYARILQHEIDHLHGTLYIDRM 166


>gi|296119004|ref|ZP_06837577.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295968102|gb|EFG81354.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 202

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + +VI  DP+L   + P+ E I+S ++  LI +M E M +  G+GLAA Q+G+  RL
Sbjct: 7   MTIRAIVIHGDPVLHNPTEPVTEAIDSPELQTLIADMCETMAAAHGVGLAANQVGIAKRL 66

Query: 59  VVIDLQD---HAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            V D  D   H H+    NP++  +    T   D     EGCLS+P       R+ +  V
Sbjct: 67  FVYDCPDDDGHMHKGCIINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWAKV 126

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
             ++   +   +   G  A CLQHE+ HL+GI++ D L  R KR
Sbjct: 127 TGLNEKGEDIEVEGTGFFARCLQHEVGHLDGIVYTDTLIGRNKR 170


>gi|262373169|ref|ZP_06066448.1| polypeptide deformylase [Acinetobacter junii SH205]
 gi|262313194|gb|EEY94279.1| polypeptide deformylase [Acinetobacter junii SH205]
          Length = 161

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 16/140 (11%)

Query: 23  KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP--------- 72
           + NS+ ++ L   M   M   +GIG+AA Q+ +  R++++     A R NP         
Sbjct: 26  EFNSEWLLQLASAMHATMLERNGIGIAAPQVYISKRVIIV-----ASRPNPRYPDAPEMD 80

Query: 73  -MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V +NP+I+ FS    + +EGCLS+PD R  V+R+  + VRY     +      DG  A
Sbjct: 81  AVVMVNPEILEFSQATCLGEEGCLSVPDERGQVQRAQSVKVRYHTLQGEVIETTFDGFPA 140

Query: 132 TCLQHELDHLNGILFIDHLS 151
             +QHE+DHL+G+LF++ LS
Sbjct: 141 RIVQHEVDHLDGVLFVERLS 160


>gi|160933492|ref|ZP_02080880.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753]
 gi|156867369|gb|EDO60741.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753]
          Length = 162

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 76/136 (55%), Gaps = 4/136 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D IL +  RP+EK +  +  L+D+M E +   +G+GLAA Q+G+L R+V++++ D     
Sbjct: 11  DGILGKKCRPVEKFDPKLWMLLDDMKETLREANGVGLAAPQVGILRRVVIVNIGDE---D 67

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +  INP+I+  S +     EGCLS P     V+R + + V+  +   +   I  + L 
Sbjct: 68  GDIELINPEIVEASGEQD-GPEGCLSCPGEWGMVRRPSHVVVKAQNRRGEFFEITGEELK 126

Query: 131 ATCLQHELDHLNGILF 146
           A    HELDHL GILF
Sbjct: 127 ARAFCHELDHLEGILF 142


>gi|119383398|ref|YP_914454.1| peptide deformylase [Paracoccus denitrificans PD1222]
 gi|119373165|gb|ABL68758.1| Peptide deformylase [Paracoccus denitrificans PD1222]
          Length = 185

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 7/149 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +P++I PDP LR +  P+ ++  D I  L  ++L  MY   G GLAA QIG  +R+ V+D
Sbjct: 29  RPILIHPDPALRVICEPVGRLGWDEIARLAADLLATMYDAGGRGLAAPQIGEGWRIFVMD 88

Query: 63  LQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              H  ++    P V ++P+I     +    +E CLSIP     V R   I++R  D   
Sbjct: 89  ---HGWKEGTPLPRVVMDPQIAPLGGEVGTMEEACLSIPGRPVSVTRPVTISMRCFDLTG 145

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
             Q++   G+ A   QHE DHL+G L +D
Sbjct: 146 TLQLLTLTGIEARIAQHETDHLDGRLILD 174


>gi|228922621|ref|ZP_04085921.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837050|gb|EEM82391.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 156

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ ++D+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAIVDVDD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|290962175|ref|YP_003493357.1| polypeptide deformylase [Streptomyces scabiei 87.22]
 gi|260651701|emb|CBG74826.1| polypeptide deformylase [Streptomyces scabiei 87.22]
          Length = 156

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 20  PIEKINS---DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           P E++     ++  L+++M   MY   G+GLAA Q+G   R+ V D  D    ++    +
Sbjct: 4   PCEEVTEFGPELARLVEDMFATMYDARGVGLAANQVGRALRVFVYDCPDDEDVRHLGHVV 63

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP++++         EGCLS+P   A V+R     V     +     ++  G  A CLQH
Sbjct: 64  NPRLVSAEGIVLRGPEGCLSLPGLEAGVERYDEAAVEGFTVDGDRVRVWGSGFFARCLQH 123

Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSK 164
           E DHL G ++ D LS  +R  + +K ++
Sbjct: 124 ECDHLEGRVYADRLSGWRRRRVLRKAAR 151


>gi|254388984|ref|ZP_05004215.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|326443292|ref|ZP_08218026.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|197702702|gb|EDY48514.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
          Length = 217

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 41  TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +     +  V     EGCLS+P   A++ R  +  V   D +
Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 206


>gi|124516548|gb|EAY58056.1| Peptide deformylase [Leptospirillum rubarum]
 gi|206603377|gb|EDZ39857.1| Peptide deformylase [Leptospirillum sp. Group II '5-way CG']
          Length = 184

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 17/168 (10%)

Query: 11  DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDH 66
           +PILR+++ PI  ++I +D     +D+M+E M  +DG+GLAA Q+ V  ++VVI+ +++ 
Sbjct: 11  NPILRKIAEPISPKEIETDEFQTFVDDMIETMRDSDGLGLAAPQVHVSKQVVVIESMEND 70

Query: 67  AHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            +   P    +V INP     S +     EGCLS+ + R  V RS  + +  +D +    
Sbjct: 71  RYPDAPPIPLLVLINPVFKYMSKETRTGWEGCLSVDNLRGKVTRSRAVKMEALDRHGNTI 130

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +  +   A  LQHE DHL G LF+D +         K MS L QL +
Sbjct: 131 TLEWEDFPAVVLQHETDHLRGHLFLDRM---------KDMSTLTQLEE 169


>gi|154685988|ref|YP_001421149.1| peptide deformylase [Bacillus amyloliquefaciens FZB42]
 gi|154351839|gb|ABS73918.1| DefA [Bacillus amyloliquefaciens FZB42]
          Length = 160

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKIVTHPAEVLETPADEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R +    +NP I+  S +     EGCLS P    DV R  ++ V+  D   +
Sbjct: 61  VDIGEESGRID---LVNPVILEKSGE-QTGVEGCLSFPGVYGDVTRPDYVKVKAYDRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I+ A+G LA  +QHE+DHL+GILF   ++
Sbjct: 117 PFILEAEGFLARAVQHEMDHLDGILFTSKIT 147


>gi|50843003|ref|YP_056230.1| polypeptide deformylase [Propionibacterium acnes KPA171202]
 gi|289426491|ref|ZP_06428234.1| peptide deformylase [Propionibacterium acnes SK187]
 gi|289428707|ref|ZP_06430390.1| peptide deformylase [Propionibacterium acnes J165]
 gi|295131074|ref|YP_003581737.1| peptide deformylase [Propionibacterium acnes SK137]
 gi|50840605|gb|AAT83272.1| polypeptide deformylase [Propionibacterium acnes KPA171202]
 gi|289153219|gb|EFD01937.1| peptide deformylase [Propionibacterium acnes SK187]
 gi|289158105|gb|EFD06325.1| peptide deformylase [Propionibacterium acnes J165]
 gi|291377293|gb|ADE01148.1| peptide deformylase [Propionibacterium acnes SK137]
 gi|313763558|gb|EFS34922.1| peptide deformylase [Propionibacterium acnes HL013PA1]
 gi|313773497|gb|EFS39463.1| peptide deformylase [Propionibacterium acnes HL074PA1]
 gi|313793950|gb|EFS41974.1| peptide deformylase [Propionibacterium acnes HL110PA1]
 gi|313801337|gb|EFS42588.1| peptide deformylase [Propionibacterium acnes HL110PA2]
 gi|313807983|gb|EFS46464.1| peptide deformylase [Propionibacterium acnes HL087PA2]
 gi|313811548|gb|EFS49262.1| peptide deformylase [Propionibacterium acnes HL083PA1]
 gi|313813394|gb|EFS51108.1| peptide deformylase [Propionibacterium acnes HL025PA1]
 gi|313816738|gb|EFS54452.1| peptide deformylase [Propionibacterium acnes HL059PA1]
 gi|313819551|gb|EFS57265.1| peptide deformylase [Propionibacterium acnes HL046PA2]
 gi|313822126|gb|EFS59840.1| peptide deformylase [Propionibacterium acnes HL036PA1]
 gi|313823640|gb|EFS61354.1| peptide deformylase [Propionibacterium acnes HL036PA2]
 gi|313825965|gb|EFS63679.1| peptide deformylase [Propionibacterium acnes HL063PA1]
 gi|313829432|gb|EFS67146.1| peptide deformylase [Propionibacterium acnes HL063PA2]
 gi|313831289|gb|EFS69003.1| peptide deformylase [Propionibacterium acnes HL007PA1]
 gi|313834899|gb|EFS72613.1| peptide deformylase [Propionibacterium acnes HL056PA1]
 gi|313839941|gb|EFS77655.1| peptide deformylase [Propionibacterium acnes HL086PA1]
 gi|314919327|gb|EFS83158.1| peptide deformylase [Propionibacterium acnes HL050PA1]
 gi|314920764|gb|EFS84595.1| peptide deformylase [Propionibacterium acnes HL050PA3]
 gi|314924710|gb|EFS88541.1| peptide deformylase [Propionibacterium acnes HL036PA3]
 gi|314930643|gb|EFS94474.1| peptide deformylase [Propionibacterium acnes HL067PA1]
 gi|314954401|gb|EFS98807.1| peptide deformylase [Propionibacterium acnes HL027PA1]
 gi|314957515|gb|EFT01618.1| peptide deformylase [Propionibacterium acnes HL002PA1]
 gi|314962119|gb|EFT06220.1| peptide deformylase [Propionibacterium acnes HL002PA2]
 gi|314963697|gb|EFT07797.1| peptide deformylase [Propionibacterium acnes HL082PA1]
 gi|314968475|gb|EFT12573.1| peptide deformylase [Propionibacterium acnes HL037PA1]
 gi|314974164|gb|EFT18260.1| peptide deformylase [Propionibacterium acnes HL053PA1]
 gi|314976545|gb|EFT20640.1| peptide deformylase [Propionibacterium acnes HL045PA1]
 gi|314978999|gb|EFT23093.1| peptide deformylase [Propionibacterium acnes HL072PA2]
 gi|314984364|gb|EFT28456.1| peptide deformylase [Propionibacterium acnes HL005PA1]
 gi|314986554|gb|EFT30646.1| peptide deformylase [Propionibacterium acnes HL005PA2]
 gi|314990913|gb|EFT35004.1| peptide deformylase [Propionibacterium acnes HL005PA3]
 gi|315079547|gb|EFT51540.1| peptide deformylase [Propionibacterium acnes HL053PA2]
 gi|315081224|gb|EFT53200.1| peptide deformylase [Propionibacterium acnes HL078PA1]
 gi|315083591|gb|EFT55567.1| peptide deformylase [Propionibacterium acnes HL027PA2]
 gi|315087107|gb|EFT59083.1| peptide deformylase [Propionibacterium acnes HL002PA3]
 gi|315089281|gb|EFT61257.1| peptide deformylase [Propionibacterium acnes HL072PA1]
 gi|315095304|gb|EFT67280.1| peptide deformylase [Propionibacterium acnes HL038PA1]
 gi|315099184|gb|EFT71160.1| peptide deformylase [Propionibacterium acnes HL059PA2]
 gi|315100332|gb|EFT72308.1| peptide deformylase [Propionibacterium acnes HL046PA1]
 gi|315106855|gb|EFT78831.1| peptide deformylase [Propionibacterium acnes HL030PA1]
 gi|315108984|gb|EFT80960.1| peptide deformylase [Propionibacterium acnes HL030PA2]
 gi|327328434|gb|EGE70196.1| peptide deformylase [Propionibacterium acnes HL096PA2]
 gi|327329700|gb|EGE71456.1| peptide deformylase [Propionibacterium acnes HL096PA3]
 gi|327334216|gb|EGE75930.1| peptide deformylase [Propionibacterium acnes HL097PA1]
 gi|327444220|gb|EGE90874.1| peptide deformylase [Propionibacterium acnes HL043PA2]
 gi|327444900|gb|EGE91554.1| peptide deformylase [Propionibacterium acnes HL043PA1]
 gi|327446386|gb|EGE93040.1| peptide deformylase [Propionibacterium acnes HL013PA2]
 gi|327452026|gb|EGE98680.1| peptide deformylase [Propionibacterium acnes HL092PA1]
 gi|327454936|gb|EGF01591.1| peptide deformylase [Propionibacterium acnes HL087PA3]
 gi|327457777|gb|EGF04432.1| peptide deformylase [Propionibacterium acnes HL083PA2]
 gi|328752375|gb|EGF65991.1| peptide deformylase [Propionibacterium acnes HL020PA1]
 gi|328755230|gb|EGF68846.1| peptide deformylase [Propionibacterium acnes HL087PA1]
 gi|328758290|gb|EGF71906.1| peptide deformylase [Propionibacterium acnes HL025PA2]
 gi|328760021|gb|EGF73603.1| peptide deformylase [Propionibacterium acnes HL099PA1]
 gi|332675954|gb|AEE72770.1| peptide deformylase 3 [Propionibacterium acnes 266]
          Length = 200

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + + +L   +RP+ + + D+  LI +M   M + DG+GLAA Q+GV   L V    D  +
Sbjct: 27  WGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVYACPDANN 86

Query: 69  RKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +   F NP ++T  +          EGCLS P     + R    T    D       +
Sbjct: 87  IVHHGAFCNP-VVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGNDITV 145

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              G  A CLQHE DH NGI+F D LS+  R  + ++   +  L
Sbjct: 146 TGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189


>gi|91794262|ref|YP_563913.1| peptide deformylase [Shewanella denitrificans OS217]
 gi|91716264|gb|ABE56190.1| Peptide deformylase [Shewanella denitrificans OS217]
          Length = 168

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 5/157 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I  +PIL R++  + + ++ ++ L D+ML  M + +G+G+AA Q+     + V+  +
Sbjct: 8   PIAITGEPILNRIAVKVSQFDASLIQLADDMLATMMAANGVGIAAGQVHSPLAMFVMASR 67

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    N     P V INP+I+++S       EGCLSIPD R  + RS  I  R+ +   
Sbjct: 68  PNERYPNAPVTEPRVIINPQILSYSTQTQAGIEGCLSIPDSRMSIVRSQQIDTRFQNLKG 127

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
           +          A   QHE DH+ GI  I+ L++ ++ 
Sbjct: 128 EFIEQSFSDFEARIFQHEFDHIKGITLIERLAQQQKQ 164


>gi|329943974|ref|ZP_08292243.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328531407|gb|EGF58249.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 163

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+LR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NPKI+  S D++    EGCLS+P      +R+ +      D N 
Sbjct: 61  WNIDGEIG-----YILNPKIVELSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGTDLNG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +  ++  + L+A C+QHE DHL G L++D L R  R    K++
Sbjct: 116 KEVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAAAMKEL 158


>gi|332709095|ref|ZP_08429064.1| peptide deformylase [Lyngbya majuscula 3L]
 gi|332352146|gb|EGJ31717.1| peptide deformylase [Lyngbya majuscula 3L]
          Length = 178

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 8/174 (4%)

Query: 1   MVKKPLVI--FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           MV + L I    +PILR+ S+ +  + +  +  LID ++    + +G+G+AA Q+   YR
Sbjct: 1   MVSETLQIAQLGNPILRQHSQGVHNLLDERLQQLIDQLIATATAANGVGIAAPQVSQSYR 60

Query: 58  LVVIDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           L ++  +      HA    P   INP +I+   D     EGCLSIP  R  V R + I V
Sbjct: 61  LFIVASRPNLRYPHAPLMEPTAMINPSMISHDTDMVKDWEGCLSIPGIRGLVPRYSRIEV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            Y +   Q+Q       +A   QHE DHL GI+F+D +   +  M  ++  K +
Sbjct: 121 EYTNRYGQYQRQQLTDFVARIFQHEYDHLEGIVFLDRVESTQEMMTEEEYQKQI 174


>gi|73666812|ref|YP_302828.1| formylmethionine deformylase [Ehrlichia canis str. Jake]
 gi|72393953|gb|AAZ68230.1| Formylmethionine deformylase [Ehrlichia canis str. Jake]
          Length = 194

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 16/163 (9%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------QD 65
           L  +S PIEKI+ +I+ L ++M++VM  +  +GL+AVQ+G   R+  I++        QD
Sbjct: 15  LHAISHPIEKIDQEIIALANDMMKVMEDSKTVGLSAVQLGNHSRMFTINMFSGLFDVTQD 74

Query: 66  -------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDC 117
                  H+     MV INP++++FS +     EGC S   Y   ++ R   +  RY D 
Sbjct: 75  IKVLSGHHSLHGKNMVCINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDFRYTDL 134

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                ++   G L+ C+QHELDHLNGIL  + +  +K + +  
Sbjct: 135 LGNKCVVRVYGWLSRCIQHELDHLNGILLANVVDNIKNNCVNS 177


>gi|314914712|gb|EFS78543.1| peptide deformylase [Propionibacterium acnes HL005PA4]
          Length = 200

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + + +L   +RP+ + + D+  LI +M   M + DG+GLAA Q+GV   L V    D  +
Sbjct: 27  WGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVYACPDANN 86

Query: 69  RKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +   F NP ++T  +          EGCLS P     + R    T    D       +
Sbjct: 87  IVHHGAFCNP-VVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGNDITV 145

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              G  A CLQHE DH NGI+F D LS+  R  + ++   +  L
Sbjct: 146 TGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189


>gi|307328361|ref|ZP_07607537.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306885934|gb|EFN16944.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 170

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 2/142 (1%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP LR     +   ++++  LI++M   MY+  G+GLAA QIGV  R+ V D  D    +
Sbjct: 6   DPGLRAPCAEVTAFDAELALLIEDMYATMYAAHGVGLAANQIGVGLRVFVFDCPDDEDHR 65

Query: 71  NPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           +    +NP++   +D  +V+  EGCLS+P   A   R     +  +    +   I   G 
Sbjct: 66  HLGHVVNPRLAA-ADGVNVHGPEGCLSLPGIEAGTSRYDRAVIEGVTMTGEPVRIEGTGF 124

Query: 130 LATCLQHELDHLNGILFIDHLS 151
            A CLQHE DHL+G LF+D LS
Sbjct: 125 FARCLQHECDHLDGGLFLDRLS 146


>gi|167760430|ref|ZP_02432557.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704]
 gi|167661929|gb|EDS06059.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704]
          Length = 165

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 84/138 (60%), Gaps = 6/138 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +  + + KI      LI++ML+ MY   G+GLAA Q+GVL R+VVID+ +     
Sbjct: 19  DEVLTKPCKEVTKITLRTKVLINDMLDTMYEALGVGLAAPQVGVLKRIVVIDVGE----- 73

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V INP+II  S + S  +EGCLS+P     V R  ++ VR ++ + +   +  +GLL
Sbjct: 74  GPIVLINPEIIETSGEQS-GEEGCLSVPGKSGMVTRPDYVKVRALNEDMEEIELEGEGLL 132

Query: 131 ATCLQHELDHLNGILFID 148
           A    HE+DHL+G +++D
Sbjct: 133 ARAFCHEIDHLDGRMYVD 150


>gi|302830440|ref|XP_002946786.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f.
           nagariensis]
 gi|300267830|gb|EFJ52012.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f.
           nagariensis]
          Length = 257

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 24/164 (14%)

Query: 12  PILRRVSR--PIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDHA 67
           P+LR+V+R  P E + S+ + NL+  M  VM +  G+GLAA QIG  +R++V+ D +++ 
Sbjct: 57  PVLRQVAREVPPELLGSEWLRNLVATMTSVMRAAPGVGLAAPQIGEPWRVIVLEDREEYI 116

Query: 68  HRK-------------------NPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRS 107
            R+                    P+V +NP+ +     + + + EGCLS+  Y A V R 
Sbjct: 117 VRQAASGMYDDDTLAAMERRAFGPLVLVNPRGLRPVGHEGAAFFEGCLSVRGYVAVVPRY 176

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             + +  +D      ++ A G +A  LQHE DHL GIL++D ++
Sbjct: 177 RIVELEAVDPAGLPVVVRASGWMARILQHEFDHLQGILYVDRMA 220


>gi|50955168|ref|YP_062456.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951650|gb|AAT89351.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 163

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + +F DP+L+ +S P+ +++  + +L+ ++++ +      G+AA QIGV  R   
Sbjct: 1   MTERQIRLFGDPVLKTLSEPVGELDESVRSLVQDLVDTVLPPGRAGVAAPQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP+++  S +  +  EGCLS+P       R  F  VR +D +  
Sbjct: 61  YNVDGEVG-----YILNPELVEVSGEPELVDEGCLSVPGLWFKTVRYPFARVRGIDLDGA 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G++A  LQHE DHL G L++D L R  R    K++ +
Sbjct: 116 EIELSGTGVMAQALQHETDHLEGKLYLDRLDRGSRREAMKQIRE 159


>gi|284032219|ref|YP_003382150.1| peptide deformylase [Kribbella flavida DSM 17836]
 gi|283811512|gb|ADB33351.1| peptide deformylase [Kribbella flavida DSM 17836]
          Length = 182

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+L   + P+   ++++  L+ ++ + M +  G GLAA QIGV  R+  
Sbjct: 1   MSVQPIRLFGDPVLTTKADPVVDFDAELRRLVADLTDTMQAAPGSGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP++ T S +     EGCLSIP    D +R+  +  +       
Sbjct: 61  YHVDGELGH-----LINPEL-TLSAEQQFGPEGCLSIPGLTFDCRRAERVIAKGFTMYGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +I    LLA C+QHE DHL+G+LF+D L    R    K + +
Sbjct: 115 PVVIEGSDLLARCIQHETDHLDGVLFVDRLDTATRKAAMKAIRE 158


>gi|254422211|ref|ZP_05035929.1| peptide deformylase [Synechococcus sp. PCC 7335]
 gi|196189700|gb|EDX84664.1| peptide deformylase [Synechococcus sp. PCC 7335]
          Length = 176

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 8/147 (5%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD---- 65
           DP+LR  +  +  +++  +  LID ++ +    +G+G+AA Q+    +L ++  +     
Sbjct: 12  DPVLRSPADKVCDVHTPAVQTLIDQLISLTLERNGVGIAAPQVSHSLQLFIVASRPNLRY 71

Query: 66  -HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD-CNAQHQI 123
            HA + +P   INP+I+ +SD  +   EGCLS+P  R  VKRS  I V Y D    Q Q 
Sbjct: 72  LHAPKMDPTAMINPQILHYSDAVTAGWEGCLSVPGMRGLVKRSKEIEVSYTDRYGQQQQQ 131

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150
           I+ D  +A  +QHE DH+NG +F+D +
Sbjct: 132 IFTD-FVARIIQHEYDHINGKVFLDRI 157


>gi|84496887|ref|ZP_00995741.1| peptide deformylase [Janibacter sp. HTCC2649]
 gi|84383655|gb|EAP99536.1| peptide deformylase [Janibacter sp. HTCC2649]
          Length = 217

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 7/156 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  +P+L R +  +E I+  I  L+ +M E M +  G+GLAA Q+GV  R+  
Sbjct: 1   MTIRPITITGEPVLHRRAESVEVIDDGIRELVADMFETMDAARGVGLAAPQVGVGLRIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSV------YQEGCLSIPDYRADVKRSAFITVRY 114
             + +H       V INP  +T S   +         EGCLS+P     ++R    T+  
Sbjct: 61  WQMDNHDGIPPRGVVINP-FVTASKPVAGDPVPADESEGCLSVPGESFPLRRGETATLTG 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +D +       A G  A   QHE DHLNG L++D L
Sbjct: 120 LDLDGNDVSYAATGWFARMFQHEYDHLNGFLYVDRL 155


>gi|319950533|ref|ZP_08024443.1| peptide deformylase [Dietzia cinnamea P4]
 gi|319435783|gb|EFV90993.1| peptide deformylase [Dietzia cinnamea P4]
          Length = 184

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 5/151 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +F DP+LR  + P+   +  +   + ++++ +   +G GLAA QIG+  R+ V    
Sbjct: 5   PVRLFGDPVLRTAADPVTSFDDRLARTVTDLMDTVAHEEGAGLAAPQIGLSTRVFVYTC- 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               R+  +V  NP+     ++ +   EGCLSIP      +R A +  R  D        
Sbjct: 64  --GGRRGHLV--NPEWEAIGNETTEVNEGCLSIPGVSMPTERFARVRARGFDMKGDPVSF 119

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            A+G+LA  +QHE+DHL+G+LF+  L+  +R
Sbjct: 120 EAEGILARAVQHEIDHLDGVLFLQRLTPERR 150


>gi|170744220|ref|YP_001772875.1| peptide deformylase [Methylobacterium sp. 4-46]
 gi|168198494|gb|ACA20441.1| formylmethionine deformylase [Methylobacterium sp. 4-46]
          Length = 165

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           PL+ +PD  LRR   P    +  +     ++ E + +   IGL    +G   RL VI L 
Sbjct: 5   PLLRYPDACLRRAVPPAALPDPRVAAFAADLAETLDAHRAIGLTGPHVGASIRLTVIRLG 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A     M  +NP+++  S + + ++EG +++P    +V+R A + VRY D +   + +
Sbjct: 65  PGAPL---MTCVNPQVVHASPETARHREGSVAMPGVDEEVERPARVRVRYQDLDGTAREV 121

Query: 125 YADGLLATCLQHELDHLNGILFID 148
            A+G LA CLQHE+D L+G+ + +
Sbjct: 122 EAEGFLAACLQHEIDQLDGVFWTE 145


>gi|313239303|emb|CBY14251.1| unnamed protein product [Oikopleura dioica]
          Length = 165

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 14/152 (9%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP LR +S+ +E  + D+  +++ M  V    D +GLAA QIG+  R++++ LQ+   + 
Sbjct: 22  DPKLREISKKVENYD-DLGKIVEEMKSVARKYDALGLAAPQIGINQRIILLTLQNGKEK- 79

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY----A 126
              +F+NP II  S       EGCLS+P   A V R   I ++  D     ++       
Sbjct: 80  ---IFVNPVIIGKSSKIVPSIEGCLSVPALVASVPRHESIRLKAFDFGKGKEVTEDFKEE 136

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           D     CLQHE+DHLNGILF+D +   +++MI
Sbjct: 137 DSF---CLQHEIDHLNGILFLDRVE--EKEMI 163


>gi|302529604|ref|ZP_07281946.1| polypeptide deformylase [Streptomyces sp. AA4]
 gi|302438499|gb|EFL10315.1| polypeptide deformylase [Streptomyces sp. AA4]
          Length = 218

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 20/162 (12%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  +RP E   SD  +  LI+ M E M++  G+GLAA QIG+  R+ V+ 
Sbjct: 25  PIVQAGDPVLRAAARPYEGELSDDTLSALIEGMKETMHAAPGVGLAAPQIGLSVRIAVV- 83

Query: 63  LQDHAHRKN-------------PMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
            +D A  +              P+ F   +NP      D+ + + EGCLS+  ++A V R
Sbjct: 84  -EDGARERPGVAESTLATRGIVPLPFRVLVNPTYTRVGDETAAFFEGCLSVRGWQAVVAR 142

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           +  I +R  D           G  A  +QHE DHL+G+L++D
Sbjct: 143 ALRIRLRGSDETGASLDEELSGWPARIVQHETDHLHGVLYLD 184


>gi|282895330|ref|ZP_06303532.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9]
 gi|281199636|gb|EFA74496.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9]
          Length = 178

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 8/164 (4%)

Query: 13  ILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-----H 66
           +L++ +  IE IN  +I  LID+++  +  ++G+G+AA Q+    RL ++  +      H
Sbjct: 14  LLQQKATEIEAINDREIQQLIDHLITTVAQSNGVGIAAPQVAQSLRLFIVASRPNPRYPH 73

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
           A    P   INPKI+ +  + +   EGCLS+P  R  V R   I V Y D N   Q    
Sbjct: 74  APEMEPTPMINPKIVGYGTEITKGWEGCLSVPGIRGLVPRYERIQVEYTDRNGNFQKQEL 133

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITK-KMSKLVQLR 169
              +A   QHE DHL G++F+D +    +D+I++ +  KL+  R
Sbjct: 134 VNFVARIFQHEYDHLEGLVFLDRVES-PQDLISEAEYQKLMNQR 176


>gi|294814920|ref|ZP_06773563.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC
           27064]
 gi|294327519|gb|EFG09162.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC
           27064]
          Length = 217

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 41  TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +     +  V     EGCLS+P   A++ R  +  V   D +
Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M +
Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMPE 206


>gi|254468385|ref|ZP_05081791.1| peptide deformylase [beta proteobacterium KB13]
 gi|207087195|gb|EDZ64478.1| peptide deformylase [beta proteobacterium KB13]
          Length = 162

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 77/143 (53%), Gaps = 9/143 (6%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--IDLQDHAH 68
           +P L +VS P++    D+  LID+M E M + DG GLAA QIGV  RLV+   D  D   
Sbjct: 3   NPELLKVSEPVDFEKEDLTTLIDDMKETMKANDGAGLAAPQIGVFKRLVIFGFDTNDRYP 62

Query: 69  RKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124
             + + F   INP I   SD+     EGCLS+P  R  V R  F  ++Y   +A+   I 
Sbjct: 63  EADSVPFTVLINPIITPLSDEKENGWEGCLSVPGLRGVVPR--FTHIKYEGYDAEGNKIE 120

Query: 125 -YADGLLATCLQHELDHLNGILF 146
              +   A  +QHE DHL+GIL+
Sbjct: 121 REVEDFHARVVQHECDHLDGILY 143


>gi|295395930|ref|ZP_06806115.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971203|gb|EFG47093.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 164

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DP+LR V  P+ +     + L  ++L+         +AA QIGV  R   
Sbjct: 1   MANRTIRTFGDPVLRTVCEPVTQFGESTVALAQDLLDTAAPEGRAAVAAPQIGVAVRAFG 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            DL    H +  +VF NP+++T  +   +  EGCLS+P       R  F TV  +D + Q
Sbjct: 61  YDL----HGRRGVVF-NPEVVTRGERRDI-DEGCLSVPGLFFPTPRYEFATVHGVDEHGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  DG+ A  LQHE DHLNG++++  L   +R    +++ +
Sbjct: 115 PIEVSGDGVFAQMLQHETDHLNGVVYVQTLPSERRKEAMRQIRQ 158


>gi|309811979|ref|ZP_07705745.1| peptide deformylase [Dermacoccus sp. Ellin185]
 gi|308434037|gb|EFP57903.1| peptide deformylase [Dermacoccus sp. Ellin185]
          Length = 191

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I     L   ++ +++I  D   L+++M E M + +G+GLAA Q+GV  R+ V
Sbjct: 1   MAVRPITIVGHKALHAPTKRVKEITDDTRALVEDMFETMEAANGVGLAANQVGVKQRIFV 60

Query: 61  IDLQDHAHRKNPM-VFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D     N   V INPK     +     D     EGCLS+P       R+ +  V  
Sbjct: 61  FDCPDDELGDNRRGVVINPKLEKGRVPAGEADEENDNEGCLSVPGEHFPTARADWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            D +    +I   G  A  LQHE DHL+G L++D L+   R
Sbjct: 121 TDLDGNEIVIEGHGFFARMLQHETDHLDGYLYLDRLTPTMR 161


>gi|255994858|ref|ZP_05427993.1| peptide deformylase [Eubacterium saphenum ATCC 49989]
 gi|255993571|gb|EEU03660.1| peptide deformylase [Eubacterium saphenum ATCC 49989]
          Length = 154

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 5/145 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +LR+ +RP+ ++   I  L+ +M E M+   G+G+AA Q+G+L R+ +++      + 
Sbjct: 11  DELLRKKARPVGEVTDRIKLLLQDMEETMHKEGGVGIAAPQVGILKRMFIME----PVQG 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +P   I+P+II  S +    +EGCLS+P     V R   I V+Y   + + +        
Sbjct: 67  SPEYVIDPEIIKASGEQEC-EEGCLSVPGVVGTVIRPEKIEVKYTGLDGKERRRLLTEFE 125

Query: 131 ATCLQHELDHLNGILFIDHLSRLKR 155
           A    HE DHL G+LFID  S +++
Sbjct: 126 AIVFSHEFDHLEGVLFIDKASNIRK 150


>gi|256832744|ref|YP_003161471.1| peptide deformylase [Jonesia denitrificans DSM 20603]
 gi|256686275|gb|ACV09168.1| peptide deformylase [Jonesia denitrificans DSM 20603]
          Length = 162

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAMREIRVVPDPVLRTKCDEITHIDDRVKGLVEDLLETVDMEGRAGLAANQIGVNLRAFA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ D     +    INP+I+  S++ +    EGCLS+P      +R  +  V  +D + 
Sbjct: 61  YNIDD-----DLGYVINPRIVELSEESYQDGDEGCLSVPGLWYPTRRHMYARVEGIDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +   +    L+  CLQHE+DHL+G+L++D   RL+R +  + M +L
Sbjct: 116 RPLTVEGTDLMGRCLQHEVDHLDGLLYLD---RLERSVRRRAMQEL 158


>gi|319649622|ref|ZP_08003778.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
 gi|317398784|gb|EFV79466.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
          Length = 161

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V +P  +L     P++  +  +  L+++M + M   DG+GLAA QIG+  ++ +
Sbjct: 1   MAVKKIVSYPAEVLEAECEPVKVFDKKLGKLLNDMYDTMIEFDGVGLAAPQIGLSRQIAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP+I+  + +     EGCLS P    +V R  ++ ++  D   +
Sbjct: 61  VDIDDEF---GTIEIINPEILETNGE-QTGPEGCLSFPGLYGEVTRPEYVKIKAQDRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  + A+  LA  + HE+DHL+G+LF   ++R
Sbjct: 117 YFTLEAEDFLARAILHEIDHLHGVLFTSKVTR 148


>gi|187734744|ref|YP_001876856.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
 gi|187424796|gb|ACD04075.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
          Length = 226

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 17/169 (10%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           +  P+LR    P+  IN DI++ +D+M E + +  GIGLAA Q+G   +LV I++     
Sbjct: 20  YGHPLLREECGPVVHINRDILSFLDDMQETL-AQGGIGLAAPQVGRPIQLVTINIPSTDA 78

Query: 67  -------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                          R  P+ FINP +  F      Y+EGCLSI    A+V R + +   
Sbjct: 79  TTTWLEVDGCPTTLSRIMPLNFINPILHPFGKKVP-YREGCLSITKVYANVMRRSCVRAV 137

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
               + +   +  +GLLA CLQHE+DHL+G LF D +S    D + +++
Sbjct: 138 LTMMDGRTVTVKCNGLLARCLQHEVDHLHGGLFTDLVSSGDHDKVIRRL 186


>gi|117926769|ref|YP_867386.1| peptide deformylase [Magnetococcus sp. MC-1]
 gi|117610525|gb|ABK45980.1| peptide deformylase [Magnetococcus sp. MC-1]
          Length = 177

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 13/167 (7%)

Query: 6   LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61
           ++++PD  L +  R +E      +     +++++E      G +GLAA Q+    R+VV+
Sbjct: 6   VLVYPDQRLLQPCRSLEAEEFKTAAFQAFVEDLIETTQHAPGCVGLAAPQVDHAIRMVVV 65

Query: 62  DLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +      RK P      ++  NP+II++ +     +EGC+S+PDY  +V R+  I+V++ 
Sbjct: 66  NCG--LARKPPDEHHGELILCNPEIISW-EGMETAREGCMSVPDYTGNVMRATHISVQFQ 122

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D + Q Q+ +  G  A  +QHE+DHL G LF D +   K D+  +K+
Sbjct: 123 DRHGQEQVRHFKGFEARVVQHEMDHLEGKLFTDRVVSRKADLFPRKV 169


>gi|126641011|ref|YP_001083995.1| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978]
          Length = 122

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 5/122 (4%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKNPMVFINPKIITFSDDFSV 89
           M   M   +G+G+AA Q+ +  R++++  + +     A   N +V +NP+I+ FS +  +
Sbjct: 1   MHATMLERNGVGIAAPQVYISKRIIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCL 60

Query: 90  YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            +EGCLS+PD R  V+R+  + V+Y+    +       G  A  +QHE+DHLNGILF++ 
Sbjct: 61  GEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVER 120

Query: 150 LS 151
           +S
Sbjct: 121 IS 122


>gi|111219523|ref|YP_710317.1| peptide deformylase 3 (PDF 3) (polypeptide deformylase 3) [Frankia
           alni ACN14a]
 gi|111147055|emb|CAJ58702.1| Peptide deformylase 3 (PDF 3) (Polypeptide deformylase 3) [Frankia
           alni ACN14a]
          Length = 224

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           + +  +P+L R  R I +  + ++  LID+M   MY  +G+GLAA QI V   L V D  
Sbjct: 44  ITVVGEPVLHRPCRKITEFGTPELAALIDDMFATMYGAEGVGLAANQIDVDAALFVYDCT 103

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D    ++     NP++   SD         +EGCLS+P    +V R     VR  D    
Sbjct: 104 DEDGVRHVGHLANPEL-EESDPAERRLVKGEEGCLSVPGAYMEVARLERAAVRGQDATGA 162

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   G  A CLQHE DHL G L++D LS   R    K+M +  +
Sbjct: 163 PLRLEGTGYFARCLQHETDHLYGGLYLDRLSSRGRKKALKEMEERAE 209


>gi|110801598|ref|YP_698920.1| polypeptide deformylase [Clostridium perfringens SM101]
 gi|110682099|gb|ABG85469.1| peptide deformylase [Clostridium perfringens SM101]
          Length = 155

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V      L++VS P++ +N ++  LI ++ + + + +GIGLAA QI V  R+V 
Sbjct: 1   MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+  D    +N  V INP++I  S +     EGCLS   +   V+R   + ++ ++   +
Sbjct: 60  INFGDG---ENEYVLINPEVIGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ++  A  LLA C  HE+DHL GI+++D    +
Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149


>gi|229820291|ref|YP_002881817.1| peptide deformylase [Beutenbergia cavernae DSM 12333]
 gi|229566204|gb|ACQ80055.1| peptide deformylase [Beutenbergia cavernae DSM 12333]
          Length = 162

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 10/158 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR     I  I+  +  L+D+++E +      GLAA QIGV  R   
Sbjct: 1   MAFRDIRVVGDPVLRTPCEEITVIDDRVRTLVDDLVETVDHEGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDC 117
            ++ D          +NP+I+  S+D   YQ   EGCLS+P       R+ +  V   D 
Sbjct: 61  WNIDDEVG-----YVLNPRIVELSED--TYQDGDEGCLSVPGLWFPTNRAWYAKVVGTDL 113

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +    ++    L+A CLQHE+DHL+G+L+ID L R  R
Sbjct: 114 DGAEVVVEGTELMARCLQHEVDHLDGMLYIDRLERSVR 151


>gi|119716668|ref|YP_923633.1| peptide deformylase [Nocardioides sp. JS614]
 gi|119537329|gb|ABL81946.1| peptide deformylase [Nocardioides sp. JS614]
          Length = 181

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIQPIRLFGDPVLRKPAIEVVDFDKELRRLVADLTDTMMDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +        P   +NP++   SD+     EGCLSIP    D +R+     R  +    
Sbjct: 61  WYVD-----GEPGHLVNPQL-DLSDELQDGPEGCLSIPGLSVDCQRAMAAVARGFNMYGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  LQHE DHL+G+LFID L    R    K + +
Sbjct: 115 PVTIEGTELLARALQHETDHLDGVLFIDRLDTEARKAAMKAIRE 158


>gi|87303617|ref|ZP_01086396.1| Formylmethionine deformylase [Synechococcus sp. WH 5701]
 gi|87281841|gb|EAQ73805.1| Formylmethionine deformylase [Synechococcus sp. WH 5701]
          Length = 232

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 6/171 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M ++ ++   DP LR+VSRP+ +  + +++ LI ++ + M + DG GLAA QI V  R+V
Sbjct: 10  MAERTVLRLGDPRLRQVSRPVTRFGTPELLALITDLRDTMAARDGAGLAAPQIAVPLRVV 69

Query: 60  VIDLQ-DHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +  +  +  + + P     V INP+I           EGCLS+P  R  V R   I  R 
Sbjct: 70  IFGITVNPRYPEAPPIPETVLINPEITPIDQACDSGWEGCLSVPGLRGQVSRWRRIHYRG 129

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            D           G  A  +QHE DHL+G+LF D L   +    T+++   
Sbjct: 130 FDAEGHLIARSVAGFHARVVQHECDHLDGVLFPDRLEDTRALGFTEELEAW 180


>gi|88606748|ref|YP_505874.1| peptide deformylase, truncation [Anaplasma phagocytophilum HZ]
 gi|88597811|gb|ABD43281.1| peptide deformylase, truncated [Anaplasma phagocytophilum HZ]
          Length = 91

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 58/85 (68%)

Query: 84  SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           S D    +EGCLS+P+ R  V R   + ++Y D + + +I+ A GLL+ CLQHE+DHLNG
Sbjct: 4   SFDLVSMEEGCLSVPNQRELVVRPERVVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNG 63

Query: 144 ILFIDHLSRLKRDMITKKMSKLVQL 168
            +FI H+S+LKRD++ +KM K   L
Sbjct: 64  TVFIKHISKLKRDLVMQKMRKAASL 88


>gi|302544000|ref|ZP_07296342.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302461618|gb|EFL24711.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 205

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 81/159 (50%), Gaps = 15/159 (9%)

Query: 17  VSRPIEKINS----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH------ 66
           +SRP +++ +    ++  LID+M   MY  DG GLAA Q+GV  RL V D  D       
Sbjct: 28  LSRPCQEVTTFGTPELAALIDDMFLTMYVADGAGLAANQVGVDLRLFVYDCPDETGARHV 87

Query: 67  AHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            H  NP++ + +P      DD     EGCLS+P     V R+    VR  D +    +I 
Sbjct: 88  GHILNPVLDLPDPGDRRLVDDI----EGCLSVPGAAMAVPRTDRAVVRGFDKDGNPLVIE 143

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             G  A CLQHE DHL G L++D LS+  R    ++M +
Sbjct: 144 GQGYFARCLQHETDHLMGHLYLDRLSQRDRKDALRQMEE 182


>gi|282854675|ref|ZP_06264010.1| peptide deformylase [Propionibacterium acnes J139]
 gi|282582257|gb|EFB87639.1| peptide deformylase [Propionibacterium acnes J139]
 gi|314966213|gb|EFT10312.1| peptide deformylase [Propionibacterium acnes HL082PA2]
 gi|314981979|gb|EFT26072.1| peptide deformylase [Propionibacterium acnes HL110PA3]
 gi|315090890|gb|EFT62866.1| peptide deformylase [Propionibacterium acnes HL110PA4]
 gi|315095103|gb|EFT67079.1| peptide deformylase [Propionibacterium acnes HL060PA1]
 gi|315104332|gb|EFT76308.1| peptide deformylase [Propionibacterium acnes HL050PA2]
 gi|327328118|gb|EGE69887.1| peptide deformylase [Propionibacterium acnes HL103PA1]
          Length = 200

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + + +L   +RP+ + + D+  L+ +M   M + DG+GLAA Q+GV   L V    D  +
Sbjct: 27  WGESVLHAQTRPVTEFDEDLTTLVRDMFATMNAADGVGLAATQVGVDLSLFVYICPDANN 86

Query: 69  RKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +   F NP ++T  +          EGCLS P     + R    T    D       +
Sbjct: 87  VVHHGAFCNP-VVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGNDITV 145

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              G  A CLQHE DH NGI+F D LS+  R  + ++   +  L
Sbjct: 146 TGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189


>gi|256789194|ref|ZP_05527625.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|23396573|sp|Q9FCA2|DEF2_STRCO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
          Length = 179

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL +  DP+L      +     ++  L++++   MY+  G+GLAA Q+G   R+ V D 
Sbjct: 14  RPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP+++          EGCLS+P   A  +R     V       +   
Sbjct: 74  PDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPVT 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   G  A CLQHE DHL G ++ D L+  +   + +++++    R
Sbjct: 134 VRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVARASWHR 179


>gi|169837129|ref|ZP_02870317.1| peptide deformylase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 191

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 8/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIG 53
           M K+ ++  P+  LR+ S+ I  I  ++  LI +M       +          LAAVQ+ 
Sbjct: 1   MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 60

Query: 54  VLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            L R+V++  + D+    +    INP+II +  + +   EGCLS+      V R   + V
Sbjct: 61  KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           + ++ + +   I A+G LA  LQHE+DH NGI+FIDH+   K
Sbjct: 121 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHIKNKK 162


>gi|58038609|ref|YP_190573.1| polypeptide deformylase [Gluconobacter oxydans 621H]
 gi|58001023|gb|AAW59917.1| Polypeptide deformylase [Gluconobacter oxydans 621H]
          Length = 170

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 80/151 (52%), Gaps = 6/151 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--A 67
           +P+L +V++ +    + +I +LI +MLE M    G GLAA Q+    R+ V  +  +  A
Sbjct: 11  NPVLHQVAQAVSDPKAPEIQSLIADMLETMADARGAGLAAPQVHQPLRIFVYHVPTNRVA 70

Query: 68  HRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           + +    P V INP+I    D+  V  EGCLSIP  RADV R A +    +D N      
Sbjct: 71  NPEEALLPRVLINPEITPVGDEMMVCSEGCLSIPGLRADVPRHAKVRYSGLDENGAVLEG 130

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            A G  A  LQHE DHLNGIL+   ++   R
Sbjct: 131 EATGFHANVLQHENDHLNGILYPQRITDFAR 161


>gi|300866152|ref|ZP_07110873.1| peptide deformylase [Oscillatoria sp. PCC 6506]
 gi|300335864|emb|CBN56033.1| peptide deformylase [Oscillatoria sp. PCC 6506]
          Length = 177

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 6/162 (3%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD---- 65
           +P+LRR ++ IE +  + +  LIDN++    + +G+G+AA Q+   YRL+++  +     
Sbjct: 12  NPVLRRQAQTIENLEDEQLQKLIDNLIHTAQNANGVGIAAPQVAQSYRLLIVASRPSTRY 71

Query: 66  -HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P   INP+II  S+D     EGCLSIP  R  V R   I + Y   + +    
Sbjct: 72  PQAPTMEPTAMINPQIIARSNDVVKDWEGCLSIPGIRGLVPRYQAIEIEYTARDGKLHRQ 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                +A   QHE DHL+G++F+D +   +  M  ++  + +
Sbjct: 132 ELRDFVARIFQHEYDHLDGLVFLDRVENAQELMAEEEYQEQI 173


>gi|54027275|ref|YP_121517.1| peptide deformylase [Nocardia farcinica IFM 10152]
 gi|54018783|dbj|BAD60153.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
          Length = 196

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+VI  DP+L   +  + +   ++  LI +M E M + +G+GLAA Q+GV  RL V D  
Sbjct: 5   PIVIVGDPVLHNPTERVTQTPEELAGLIADMYETMDAANGVGLAANQVGVPLRLFVYDCP 64

Query: 65  DHAHRKNPM----VFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D      P+      INP + T        D    +EGCLS+P  +    R+ +  V  +
Sbjct: 65  DAGPDGQPVRRRGAVINPVLETSEIPETMPDPDDDEEGCLSVPGEQFPTGRAEWARVTGI 124

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           D N     I   G  A  LQHE+ HL+G L++D L
Sbjct: 125 DENGGPVDIEGKGFFARMLQHEVGHLDGYLYVDKL 159


>gi|114778706|ref|ZP_01453518.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1]
 gi|114551068|gb|EAU53630.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1]
          Length = 169

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 4/154 (2%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAH 68
           PD  LR+V   +    SD+      +  VM +   G+G+AA QIG   R++VID ++   
Sbjct: 16  PDERLRQVCPDVTDFGSDLEARFAQLDAVMRAAPGGVGIAAPQIGWQQRMIVIDCRESLR 75

Query: 69  --RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             + N +++++  +I   +  ++ +EGCLS+PD+ A V+R+  + V Y D +     + +
Sbjct: 76  PCKNNGLLWMSNPVIESVEGKALGREGCLSVPDWVAMVERARSLQVSYDDVHGDRLSLES 135

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            G  A  +QHELDHL+GILFID +    RD++ +
Sbjct: 136 TGFEARVIQHELDHLDGILFIDRVVS-ARDLVRR 168


>gi|21219721|ref|NP_625500.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|289773087|ref|ZP_06532465.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|9716195|emb|CAC01493.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|289703286|gb|EFD70715.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 217

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL +  DP+L      +     ++  L++++   MY+  G+GLAA Q+G   R+ V D 
Sbjct: 52  RPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYDC 111

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP+++          EGCLS+P   A  +R     V       +   
Sbjct: 112 PDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPVT 171

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   G  A CLQHE DHL G ++ D L+  +   + +++++    R
Sbjct: 172 VRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVARASWHR 217


>gi|213026865|ref|ZP_03341312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 98

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 67/93 (72%), Gaps = 3/93 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +  +
Sbjct: 9   IPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--N 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           R   +V INP+++  S +  + +EGCLSIP+ R
Sbjct: 67  RDERLVLINPELLEKSGETGI-EEGCLSIPEQR 98


>gi|72162832|ref|YP_290489.1| peptide deformylase [Thermobifida fusca YX]
 gi|71916564|gb|AAZ56466.1| peptide deformylase [Thermobifida fusca YX]
          Length = 185

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+P+V+F DP+L   + PI   N     LI ++++ + +    G+AA QIGV      
Sbjct: 1   MTKRPIVLFGDPVLSTPAAPITTFNRHTEALIRDLMDTVDAPGRAGVAAPQIGV------ 54

Query: 61  IDLQDHAHRKNPMV--FINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDC 117
             L+  ++R +  +   INP+I+  S++      EGCLS+P       R+    V+ +D 
Sbjct: 55  -GLRAFSYRVDGQIGYVINPEIVELSEEIQEDGNEGCLSVPGLWYPTPRARRAVVKGVDL 113

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +  ++   G++A CLQHE DHL G L++D L    R    +++ +
Sbjct: 114 RNEPVVVAGTGVMARCLQHETDHLAGKLYLDRLPPETRRAAMREIRR 160


>gi|119964524|ref|YP_948136.1| peptide deformylase [Arthrobacter aurescens TC1]
 gi|119951383|gb|ABM10294.1| peptide deformylase [Arthrobacter aurescens TC1]
          Length = 190

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 7/152 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA QIGV  RL V    
Sbjct: 5   PVTIWGEPVLHRRASEVEVFDDELRALIADMFETNDAANGVGLAAPQIGVGKRLFVYKYA 64

Query: 65  DHAHRKNPMVFINPKIITFSD------DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +        V +NP ++T S       D   + EGCLS P     ++R+ +  V+  D N
Sbjct: 65  NDDDVPEQGVVVNP-VLTLSKVSGALPDPDEHVEGCLSFPGEYYPLQRAEWTRVQGFDGN 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                  A G  A  LQHE DHL+GIL+++ L
Sbjct: 124 GNALDFEATGWFARILQHEFDHLDGILYVNRL 155


>gi|317125290|ref|YP_004099402.1| peptide deformylase [Intrasporangium calvum DSM 43043]
 gi|315589378|gb|ADU48675.1| peptide deformylase [Intrasporangium calvum DSM 43043]
          Length = 215

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 11/173 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  +P+L R +  + + + ++  L+ +M E   + +G+GLAA QIGV  R+ +
Sbjct: 1   MAVRPIVISGEPVLHRSAALVTEFDDELRQLVGDMHETNDAANGVGLAAPQIGVGLRVFI 60

Query: 61  IDLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             + +        H  NP V  + +I     D     EGCLS+P     +KR+    V  
Sbjct: 61  WKMDNEDGVPARGHIINPTVRTS-RIPQERPDPREETEGCLSVPGESFPLKRAERAHVVG 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +D         A G  A C+QHE DHLNG L++D L     D   KK  K V+
Sbjct: 120 LDLEQNRVEFDATGWFARCMQHEYDHLNGTLYVDRLD----DRQAKKARKAVK 168


>gi|291530592|emb|CBK96177.1| peptide deformylase [Eubacterium siraeum 70/3]
 gi|291557816|emb|CBL34933.1| peptide deformylase [Eubacterium siraeum V10Sc8a]
          Length = 160

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 80/153 (52%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ +    D  LR+  + +   +  +  ++D+M E M   +G+GLAA QI VL R+VV
Sbjct: 1   MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  H K  +  INP +IT         EGCLS+P     V R A + V+  D   +
Sbjct: 61  IDVGDE-HGK--IELINP-VITSMKGKQHELEGCLSVPGMWGYVDRPAKVKVKAQDRYGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I    LLA  L HE+DHL+GILF D    L
Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADEL 149


>gi|167957315|ref|ZP_02544389.1| peptide deformylase [candidate division TM7 single-cell isolate
           TM7c]
          Length = 211

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIG 53
           M K+ ++  P+  LR+ S+ I  I  ++  LI +M       +          LAAVQ+ 
Sbjct: 21  MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 80

Query: 54  VLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            L R+V++  + D+    +    INP+II +  + +   EGCLS+      V R   + V
Sbjct: 81  KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 140

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           + ++ + +   I A+G LA  LQHE+DH NGI+FIDH+   K+D   K
Sbjct: 141 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHIKN-KKDAFYK 187


>gi|271969762|ref|YP_003343958.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021]
 gi|270512937|gb|ACZ91215.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021]
          Length = 174

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 6/152 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVVIDLQ 64
           L+  P P+L   +R ++  +  ++    ++L  M  +    GLAA QIG+ +RL+ +D+ 
Sbjct: 12  LIAAPHPVLTARARAVDPADPRVVVAAADLLATMRRARHCTGLAAPQIGLDWRLLSVDVS 71

Query: 65  DHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            H   ++    +V  NP+++  S  +   +EGCLS+P    DV R+  ITVR        
Sbjct: 72  LHPGARSCAGELVVANPRLVAASR-WEPAREGCLSVPGLTGDVLRATRITVRGERPGTGA 130

Query: 122 QI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
            + I AD   A C+QH+LDHL+G+LF+D ++R
Sbjct: 131 PVTIDADAFEARCIQHQLDHLDGVLFLDRVTR 162


>gi|332227624|ref|XP_003262991.1| PREDICTED: peptide deformylase, mitochondrial-like [Nomascus
           leucogenys]
          Length = 240

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++V++L +  
Sbjct: 72  DPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLVLELTEAL 131

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            R+ P               VF+NP +         + EGC S+  + A V R   + + 
Sbjct: 132 CRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRLQAVQIS 191

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D N +  +  A G  A  +QHE+DHL G LFID +
Sbjct: 192 GLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 228


>gi|254393357|ref|ZP_05008503.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|294811339|ref|ZP_06769982.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|326439928|ref|ZP_08214662.1| polypeptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|197706990|gb|EDY52802.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|294323938|gb|EFG05581.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064]
          Length = 186

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 2/148 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL ++ +P+L      +      +  L++++   MY+ +G+GLAA Q+GV  R+ V D 
Sbjct: 14  RPLSLYGNPVLHTPCETVTDFGPALGKLVEDLFATMYARNGVGLAANQMGVGLRVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            D    ++    +NP+++  +D   V   EGCLS+P   A V+R     V   D +    
Sbjct: 74  PDDDEVRHLGHIVNPRLVA-ADGVEVRGPEGCLSLPGLEAPVERYDRAVVEGQDSDGGPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150
            +   G  A CLQHE DHL+G ++ D L
Sbjct: 133 RVEGTGFFARCLQHETDHLDGSVYADRL 160


>gi|302558503|ref|ZP_07310845.1| peptide deformylase [Streptomyces griseoflavus Tu4000]
 gi|302476121|gb|EFL39214.1| peptide deformylase [Streptomyces griseoflavus Tu4000]
          Length = 216

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +     ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHQECQDVTDFGEELQQLVADMFASQRTAEGVGLAANQIGVDKKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    +        EGCLS+P     + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVICNPELVELPAEKRRLDDSNEGCLSVPTAYMPLARPDYAEVTGRDEQ 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|116670231|ref|YP_831164.1| peptide deformylase [Arthrobacter sp. FB24]
 gi|116610340|gb|ABK03064.1| peptide deformylase [Arthrobacter sp. FB24]
          Length = 197

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 80/152 (52%), Gaps = 13/152 (8%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV---VIDLQ 64
           I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA Q+GV  R+    +  ++
Sbjct: 10  IIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFTYRIGGVE 69

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            H         INP ++  S+DF   + EGCLSIP     V+R     V  +D +     
Sbjct: 70  GH--------IINP-VLENSEDFQPDEVEGCLSIPGLGFPVRRRRATRVTGVDLHGHPVT 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +  +G+LA C QHE DHL+GILF D L    R
Sbjct: 121 VDGEGMLARCFQHETDHLDGILFTDRLEGEDR 152


>gi|294651129|ref|ZP_06728464.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
 gi|292822961|gb|EFF81829.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
          Length = 163

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 16/140 (11%)

Query: 23  KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP--------- 72
           + NS+ ++ L   M   M   +G+G+AA Q+ +  R++++     A R NP         
Sbjct: 28  EFNSEWLLQLASAMHATMLERNGVGIAAPQVYISKRVIIV-----ASRPNPRYPDAPEMD 82

Query: 73  -MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V +NP+I+ FS    + +EGCLS+PD R  V+R+  I VRY     +      +G  A
Sbjct: 83  AVVMVNPEILEFSQQTCLGEEGCLSVPDQRGVVERAQTIKVRYYTLQGEVVETTFEGFPA 142

Query: 132 TCLQHELDHLNGILFIDHLS 151
             +QHE+DHL+G+LF++ +S
Sbjct: 143 RIVQHEVDHLDGVLFVERMS 162


>gi|167750831|ref|ZP_02422958.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702]
 gi|167656266|gb|EDS00396.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702]
          Length = 160

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 80/153 (52%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ +    D  LR+  + +   +  +  ++D+M E M   +G+GLAA QI VL R+VV
Sbjct: 1   MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  H K  +  INP +IT         EGCLS+P     V R A + V+  D   +
Sbjct: 61  IDVGDE-HGK--IELINP-VITSMKGKQHELEGCLSLPGMWGYVDRPAKVKVKAQDRYGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I    LLA  L HE+DHL+GILF D    L
Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADEL 149


>gi|300934596|ref|ZP_07149852.1| polypeptide deformylase [Corynebacterium resistens DSM 45100]
          Length = 222

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 28/175 (16%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+VI  DP+L   ++P+E       ++++  LI++M E M    G+GLAA Q+GV 
Sbjct: 1   MTIMPIVIAGDPVLHNPTKPVELQEGKAPSAELTQLINDMYETMDRAHGVGLAANQVGVD 60

Query: 56  YRLVVIDLQD----HAHR---------KNPM---VFINPKIITFSD------DFSVYQEG 93
            RL V    D       R           PM     INP + T SD      D  + +EG
Sbjct: 61  LRLFVYHCPDIEGADGERLTEEQIEANGGPMRRGCVINPTLET-SDIPETMPDEEIDEEG 119

Query: 94  CLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           CLS+P Y     R+ +  V  +D N Q   +   G  A CLQHE+ HL+G L+ D
Sbjct: 120 CLSVPGYSFPTGRADWARVTGLDENGQPITVEGYGFFARCLQHEVGHLDGFLYTD 174


>gi|256379232|ref|YP_003102892.1| peptide deformylase [Actinosynnema mirum DSM 43827]
 gi|255923535|gb|ACU39046.1| peptide deformylase [Actinosynnema mirum DSM 43827]
          Length = 181

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  + + + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPAVEVTEFDVELRKLVKDLWDTMSDAGGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                 A        +NP      D+     EGCLSIP    D  R   +  R  + + +
Sbjct: 61  YHCDGFAGH-----MVNPTFDVVGDETQDGPEGCLSIPGMSWDCVRHRQVVARGWNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +    LLA C+QHE DHL+G++F+D L    R    +++ +
Sbjct: 116 PVEVEGTDLLARCIQHETDHLDGVVFVDRLDEETRKRAMREIRQ 159


>gi|120597766|ref|YP_962340.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|146294101|ref|YP_001184525.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|120557859|gb|ABM23786.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|145565791|gb|ABP76726.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|319427442|gb|ADV55516.1| peptide deformylase [Shewanella putrefaciens 200]
          Length = 181

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 80/149 (53%), Gaps = 5/149 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  + + ILR+ +  + + ++ + +L + M   M +  G+G+AA Q+     + ++  +
Sbjct: 15  PIAQYGEAILRQTAIEVRQFDAKLTHLAEQMSASMMAAKGVGIAAPQVHSPLAMFIMASR 74

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +A   +     P+V +NP+I+  SD+ +  +EGCLS+P+ R  + R   I VRY +   
Sbjct: 75  PNARYPDAPHMAPVVVVNPQILNVSDELNAGEEGCLSVPEQRFIIPRHDRIEVRYQNLQG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           + Q     G +A   QHE DHL GI  ++
Sbjct: 135 EWQQAVLSGFIARIFQHEFDHLQGITLLE 163


>gi|325963678|ref|YP_004241584.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469765|gb|ADX73450.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 190

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 5/151 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  R+ V    
Sbjct: 5   PITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFVYKYA 64

Query: 65  DHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +        V +NP     KI     D    +EGCLS P  +  +KR+ +  V   D   
Sbjct: 65  NDDGAPPAGVLVNPVLTLSKISGAVPDPDEEEEGCLSFPSGQYPLKRAEWARVEGFDGYG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Q     A G  A  +QHE DHL+G L+++ L
Sbjct: 125 QPVRFEATGWFARVMQHEYDHLDGKLYVNRL 155


>gi|237843361|ref|XP_002370978.1| peptide deformylase, putative [Toxoplasma gondii ME49]
 gi|211968642|gb|EEB03838.1| peptide deformylase, putative [Toxoplasma gondii ME49]
 gi|221502320|gb|EEE28053.1| peptide deformylase, putative [Toxoplasma gondii VEG]
 gi|289064341|gb|ADC80546.1| peptide deformylase [Toxoplasma gondii]
          Length = 353

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 10  PDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHA 67
           P  +LR  + P     + +   L  ++L VMY   G+GLAA Q+GV  +++V +   D  
Sbjct: 191 PHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIVWNPTGDVR 250

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                 VF+NP++++         EGCLS+P   A V+R     VRY       +     
Sbjct: 251 ESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEGIQREATLS 310

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           GL A  +QHE+DHL+GILF+D + R +R   T
Sbjct: 311 GLEARVVQHEIDHLHGILFVDRVHRGERSAHT 342


>gi|296130000|ref|YP_003637250.1| peptide deformylase [Cellulomonas flavigena DSM 20109]
 gi|296021815|gb|ADG75051.1| peptide deformylase [Cellulomonas flavigena DSM 20109]
          Length = 162

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR    PI  I+  + +L++++LE +      GLAA QIGV  R   
Sbjct: 1   MALREIRTVGDPVLRTPCDPITTIDERVRSLVEDLLETVDMDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ D          +NP I+  S+D +    EGCLS+P       R+ +  V   D + 
Sbjct: 61  WNIDDEIG-----YVLNPVIVELSEDEYQDGDEGCLSVPGLWFPTHRAWYARVVGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +  ++    L+A CLQHE+DHL+G+L++D L R  R
Sbjct: 116 REVVVEGTELMARCLQHEVDHLDGMLYLDRLERSVR 151


>gi|251772750|gb|EES53312.1| peptide deformylase [Leptospirillum ferrodiazotrophum]
          Length = 184

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 12/157 (7%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDH 66
           +P+LR++S P+ K      +    +D+M+E M   DG+GLAA Q+ V  ++V+I+ L D 
Sbjct: 11  NPVLRKISEPVSKEEIARPEFQRFLDDMIETMKDEDGLGLAAPQVHVSKQVVIIESLDDP 70

Query: 67  AHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                P    +V INP     S +     EGCLS+ + R  V RS  + +  +    +  
Sbjct: 71  RSEDGPPTPLLVLINPVFKYMSKETRTGWEGCLSLDNLRGKVTRSRAVKLEALGRKGETI 130

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           ++  +   A  LQHE+DHL G LF+D +    +DM T
Sbjct: 131 VLDWEEFPAVVLQHEIDHLRGHLFVDRM----KDMST 163


>gi|88704771|ref|ZP_01102484.1| Peptide deformylase [Congregibacter litoralis KT71]
 gi|88701092|gb|EAQ98198.1| Peptide deformylase [Congregibacter litoralis KT71]
          Length = 169

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 3/146 (2%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PD  LR  S  + + +  +   ++++ E +  +  IGL+A Q G+  R++V+ + D    
Sbjct: 10  PDERLREHSEAVSRFDEALQQQVNDLFETLGHSGAIGLSAPQTGIFKRIIVVHVPDDDF- 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               V+INP+I+  S    V +E CLS+P    +V R   + +R  D + +      D L
Sbjct: 69  -GARVYINPEILKRSKSRYV-EESCLSVPGIEGNVVRCIRVKLRAQDIHGKLCEFDVDDL 126

Query: 130 LATCLQHELDHLNGILFIDHLSRLKR 155
            A C+QHE+DHL+GILF D LS  K+
Sbjct: 127 HAVCVQHEVDHLDGILFTDRLSWFKK 152


>gi|154509286|ref|ZP_02044928.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798920|gb|EDN81340.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC
           17982]
          Length = 212

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 32/178 (17%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV-----LYRLV 59
           P+ I  +P+L RV+ P++ I+S++ +L+ +M+E M++  G+GLAA Q+GV     ++R  
Sbjct: 5   PICITGEPVLHRVADPVDSIDSELRDLVADMIETMHAAPGVGLAAPQVGVGAQVFVWRYG 64

Query: 60  VIDLQDHAHR------KNPM---------VFINP------------KIITFSDDFSVYQE 92
                D  +R      + P          V +NP             I+    D ++  E
Sbjct: 65  GAGSFDAQYREVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIALESE 124

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           GCLS+P Y   ++R     +R  D +     + A G LA   QHE DHL G L++D L
Sbjct: 125 GCLSVPGYGYPLRRVLGAVLRGYDVDGNAIEVSARGWLARIFQHEYDHLQGTLYVDRL 182


>gi|225442881|ref|XP_002281834.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743418|emb|CBI36285.3| unnamed protein product [Vitis vinifera]
          Length = 277

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61
           DP+L   ++ +E  +I SD I  +ID+M++ M +  G+GLAA QIG+  R++V+      
Sbjct: 96  DPVLHESAQEVEPGEIGSDRIQKIIDDMIKAMRTAPGVGLAAPQIGIPLRIIVLEDTKEY 155

Query: 62  ---DLQD--HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
              D +D   A  + P   +V +NPK+    +  + + EGCLS+  +RA V+R   + V 
Sbjct: 156 ISYDRKDVIKAQERRPFDLLVILNPKLRKKGNRTAFFFEGCLSVDGFRAVVERHLQVEVT 215

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +  N +   + A G  A  LQHE DHL+G L++D +
Sbjct: 216 GLSRNGKPIKVDASGWKARILQHECDHLDGTLYVDKM 252


>gi|55297586|dbj|BAD68932.1| peptide deformylase-like [Oryza sativa Japonica Group]
          Length = 326

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 38/184 (20%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS------------------------ 41
           +V +PDPILR  ++ I   + ++ +L D M +VMY+                        
Sbjct: 99  VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYNASDSICVTLLNKQIKKGLLSTIAR 158

Query: 42  --------------TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87
                         TDGIGL+A Q+GV  +L+V +          +V +NP +   S   
Sbjct: 159 EDIPPIEPLVSCYRTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRL 218

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
            VY+E CLS P   A+V R   + +   D       +   GL A   QHE DHL GILF 
Sbjct: 219 LVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFF 278

Query: 148 DHLS 151
           D +S
Sbjct: 279 DRMS 282


>gi|296536912|ref|ZP_06898949.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
 gi|296262760|gb|EFH09348.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
          Length = 176

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 12  PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           P+L RV+ P+ +  + +I  LI +M E M    G+GLAA Q+ V  R+ V    +     
Sbjct: 12  PVLLRVADPVPDPTDPEIRRLIRDMAETMLDAGGLGLAAPQVHVPLRIFVFRQGETV--- 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                +NP+I           EGCLSIP  R +V+R+  I  R +D          +GLL
Sbjct: 69  --AALVNPEIELLGPPDQRGWEGCLSIPGLRGNVERAQRIAFRGLDVEGDSVEGEVEGLL 126

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  +QHE DHLNGIL+   +S
Sbjct: 127 ARVMQHEFDHLNGILYPSRMS 147


>gi|154505954|ref|ZP_02042692.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149]
 gi|153793972|gb|EDN76392.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149]
          Length = 159

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL +  +P+ K+      LI++ML+ MY   G+GLAA Q+GVL ++VV
Sbjct: 1   MAIREVRIMGDDILEKQCKPVTKMTMRTKILIEDMLDTMYEKYGVGLAAPQVGVLKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+II  S +    +EGCLS+P     V R  ++ VR ++   +
Sbjct: 61  IDVGE-----GPIVLINPEIIETSGE-QTGEEGCLSLPGKWGIVTRPNYVKVRALNEEME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA    HE+DHL G ++++ + 
Sbjct: 115 EVELEGEGLLARAFCHEIDHLAGHMYVERVE 145


>gi|18310615|ref|NP_562549.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110800596|ref|YP_696318.1| polypeptide deformylase [Clostridium perfringens ATCC 13124]
 gi|168207151|ref|ZP_02633156.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|168213602|ref|ZP_02639227.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|169342870|ref|ZP_02863901.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|23396560|sp|Q8XJX0|DEF2_CLOPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|18145296|dbj|BAB81339.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110675243|gb|ABG84230.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|169299127|gb|EDS81199.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|170661437|gb|EDT14120.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|170714896|gb|EDT27078.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
          Length = 155

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V      L++VS P++ +N ++  LI ++ + + + +GIGLAA QI V  R+V 
Sbjct: 1   MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+  D    +N  V INP++   S +     EGCLS   +   V+R   + ++ ++   +
Sbjct: 60  INFGDG---ENEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ++  A  LLA C  HE+DHL GI+++D    +
Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149


>gi|226952063|ref|ZP_03822527.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244]
 gi|226837220|gb|EEH69603.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244]
          Length = 163

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 16/140 (11%)

Query: 23  KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP--------- 72
           + NS+ ++ L   M   M   +G+G+AA Q+ +  R++++     A R NP         
Sbjct: 28  EFNSEWLLQLASAMHATMLERNGVGIAAPQVYISKRVIIV-----ASRPNPRYPDAPEMD 82

Query: 73  -MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V +NP+I+ FS    + +EGCLS+PD R  V+R+  I VRY     +      +G  A
Sbjct: 83  AVVMVNPEILEFSQTTCLGEEGCLSVPDQRGFVERAQTIKVRYYTLQGEVVETTFEGFPA 142

Query: 132 TCLQHELDHLNGILFIDHLS 151
             +QHE+DHL+G+LF++ +S
Sbjct: 143 RIVQHEVDHLDGVLFVERMS 162


>gi|166365029|ref|YP_001657302.1| polypeptide deformylase [Microcystis aeruginosa NIES-843]
 gi|166087402|dbj|BAG02110.1| polypeptide deformylase [Microcystis aeruginosa NIES-843]
          Length = 180

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 8/148 (5%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           +PIL++ +  I+ + ++D  NLID+++  + +  G+G+AA Q+    RL ++    +   
Sbjct: 12  NPILQQKAAAIDNLLDADCQNLIDSLITTVQAAHGVGIAAPQVARSLRLFIVASHPNPRY 71

Query: 70  KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH-QI 123
            +     P   INP+I+  S++     EGCLS+P+ R  V R  +I V Y D N +  + 
Sbjct: 72  PDAPMMPPTAVINPRILRVSEEMVKGWEGCLSVPNLRGFVPRHQWIEVAYCDRNGREIRQ 131

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           ++ D  +A   QHE DHL GILF+D L+
Sbjct: 132 VFRD-FVARIFQHEYDHLEGILFLDRLA 158


>gi|119899899|ref|YP_935112.1| peptide deformylase [Azoarcus sp. BH72]
 gi|119672312|emb|CAL96226.1| probable peptide deformylase [Azoarcus sp. BH72]
          Length = 177

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 6/151 (3%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R +RP+    +D +  ++ +M+E M++  G+GLAA Q+G+  RLV+   +     
Sbjct: 10  DPRLMRAARPVCAFGTDELRRIVADMVETMHAAGGVGLAAPQVGIDLRLVIFGFERSERY 69

Query: 70  KN--PMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +  P+ F    NP +   SD+     EGCLS+P  R  V R   +  R  D + +    
Sbjct: 70  PDAPPVPFTVLANPVLTPLSDELEEGWEGCLSVPGLRGWVPRFRHLLYRGADIDGKPLER 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +G  A  +QHE DHL+GIL+   +S   R
Sbjct: 130 EVEGFHARVVQHECDHLDGILYPARISDFSR 160


>gi|46446175|ref|YP_007540.1| putative peptide deformylase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399816|emb|CAF23265.1| putative Peptide deformylase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 156

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 9/151 (5%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM-------VFI 76
           I+  +  LI +M+E M++  GIGLAA Q+     L V  +      KN +       VFI
Sbjct: 4   IDDALKQLIYDMVETMHTMKGIGLAAPQVHHSISLFVTCVP--VKNKNGLWESGKDRVFI 61

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP+I++ S++   + EGCLSIP+   +V R A ITV+ +D           GL AT   H
Sbjct: 62  NPQILSMSEETQTFSEGCLSIPNLHMNVTRPAKITVQAVDLEGNLFEEIFTGLQATNFMH 121

Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           E DHLNGIL ID+ S  +R  + +  S  +Q
Sbjct: 122 EYDHLNGILIIDYYSLEERKSLEQLFSTSIQ 152


>gi|256832092|ref|YP_003160819.1| peptide deformylase [Jonesia denitrificans DSM 20603]
 gi|256685623|gb|ACV08516.1| peptide deformylase [Jonesia denitrificans DSM 20603]
          Length = 215

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 15/160 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+VI  DP+LR+ +  + + +  ++ L+ +M + M  ++G+GLAA QIGV  R+ V D  
Sbjct: 4   PIVIDGDPVLRQRAAEVTEFDDALVQLVADMYDTMRVSNGVGLAAPQIGVGQRIFVFDAP 63

Query: 65  DHAHRKNPMVFINPK--IITFSDDFSVYQ------------EGCLSIPDYRADVKRSAFI 110
           D   ++   V +NP   I+     F++              EGCLS P    + KR   +
Sbjct: 64  DEDEQRR-GVVVNPSLMIVQRPPRFALKGEGKRPPKSLTDVEGCLSFPGPDFEAKRHYAV 122

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            V   D + +  +I  +G  A  LQHE DHL+G+L++D L
Sbjct: 123 RVTGWDEHGEPVVIDGEGWFARVLQHEYDHLDGLLYVDRL 162


>gi|325068970|ref|ZP_08127643.1| peptide deformylase [Actinomyces oris K20]
 gi|326773171|ref|ZP_08232454.1| peptide deformylase [Actinomyces viscosus C505]
 gi|326636401|gb|EGE37304.1| peptide deformylase [Actinomyces viscosus C505]
          Length = 163

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DPILR     I  I+  +  L++++LE +      GLAA QIG+  R   
Sbjct: 1   MAYRDIRIIGDPILRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NPKI+  S D++    EGCLS+P      +R+ +     +D + 
Sbjct: 61  WNIDGEIG-----YILNPKIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +  ++  + L+A C+QHE DHL G L++D L R  R    K++
Sbjct: 116 KEVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAKAMKEL 158


>gi|149919087|ref|ZP_01907571.1| putative polypeptide deformylase protein [Plesiocystis pacifica
           SIR-1]
 gi|149820017|gb|EDM79438.1| putative polypeptide deformylase protein [Plesiocystis pacifica
           SIR-1]
          Length = 192

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 8/148 (5%)

Query: 12  PILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD--- 65
           P+LR+V+R   P E    +I   ID+++  M   +G GLAA Q+    ++  +++Q    
Sbjct: 13  PVLRQVAREVSPEELATPEIQGFIDDLVATMRHANGAGLAANQVFEPIQICALEVQSNPR 72

Query: 66  HAHRKN-PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           + ++ N P+ V +NPK+    DD     EGCLS+PD R  V+R A + V+ +D       
Sbjct: 73  YPYKPNIPLTVLVNPKLTPLGDDSFANYEGCLSVPDLRGVVRRHARLRVQALDREGNSLD 132

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
               G+ A   QHE+DHL G LF+D + 
Sbjct: 133 FETAGVTAGTYQHEVDHLRGKLFLDRVE 160


>gi|218249152|ref|YP_002374523.1| peptide deformylase [Cyanothece sp. PCC 8801]
 gi|218169630|gb|ACK68367.1| peptide deformylase [Cyanothece sp. PCC 8801]
          Length = 178

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 6/144 (4%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           +PILR+ ++ I +I + ++  LID ++       G+G+AA Q+    RL ++    +   
Sbjct: 12  NPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILASHPNPRY 71

Query: 70  KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            N     P+  INP+I++ S +     EGCLS+P  R  V R  ++ V Y D   Q Q  
Sbjct: 72  PNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDRFGQFQQQ 131

Query: 125 YADGLLATCLQHELDHLNGILFID 148
                +A   QHELDHLNG++F+D
Sbjct: 132 KLTDFVARIFQHELDHLNGLIFLD 155


>gi|168209296|ref|ZP_02634921.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|182626083|ref|ZP_02953844.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
 gi|170712476|gb|EDT24658.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|177908604|gb|EDT71125.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
          Length = 155

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V      L++VS P++ +N ++  LI ++ + + + +GIGLAA QI V  R+V 
Sbjct: 1   MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIKDLKDTLATVEGIGLAAPQIAVNKRVVY 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+  D    +N  V INP++   S +     EGCLS   +   V+R   + ++ ++   +
Sbjct: 60  INFGDG---ENEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ++  A  LLA C  HE+DHL GI+++D    +
Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149


>gi|237785573|ref|YP_002906278.1| peptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758485|gb|ACR17735.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 178

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 8/158 (5%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           IF DP+L   +  +   +  +  L+D+M+E M    G GLAA Q+GVL R+ V +     
Sbjct: 8   IFGDPVLTTPAEQVTDFDEPLGILVDDMMETMDHYRGAGLAANQVGVLRRVFVYNC---G 64

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R+  +V  NP      D+     EGCLS+P   A+ +R   ++V     +       AD
Sbjct: 65  GRRGHIV--NPVWKHEGDETQYGPEGCLSVPSIHANTRRWMNVSVTGQTVDGDPVSFSAD 122

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           G+LA C+QHE DHL+G+++   + RL+ ++  + M+++
Sbjct: 123 GILARCIQHETDHLDGVMY---MRRLEPEIRKETMAQI 157


>gi|225022087|ref|ZP_03711279.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680576|ref|ZP_07403384.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
 gi|224945020|gb|EEG26229.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660107|gb|EFM49606.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
          Length = 201

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 83/171 (48%), Gaps = 25/171 (14%)

Query: 1   MVKKPLVIFPDPILRR----VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  +P+VI+  P+L +    V+ PI+ +      LID+M E M    G+GLAA QIGV  
Sbjct: 7   MTVRPIVIYGTPVLHQPTAIVTEPIDTLRE----LIDDMFETMEKAHGVGLAANQIGVGK 62

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIIT-----------FSDDFSVYQEGCLSIPDYRADVK 105
           R+ V +  D     +   FINP + T            SDD     EGCLS+P       
Sbjct: 63  RIFVYNCPDDEGVIHRGCFINPVLETSDIPEGMPAVDGSDD-----EGCLSLPGLSFPTG 117

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
           R+ +  V  ++ N +       G LA C QHE+ HL+G ++ D L  R KR
Sbjct: 118 RATWAKVTGLNENGEEVSEEGTGFLARCFQHEVGHLDGFVYADVLQGRWKR 168


>gi|302533115|ref|ZP_07285457.1| peptide deformylase [Streptomyces sp. C]
 gi|302442010|gb|EFL13826.1| peptide deformylase [Streptomyces sp. C]
          Length = 182

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ +  +P+L      +     ++  LI++M   MY+  G+GLAA QIG   R+ V D 
Sbjct: 14  RPMTLLGEPVLHSPCAEVTDFGPELDRLIEDMFATMYAAQGVGLAANQIGTGLRVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP+++    D     EGCLS+P   A   R     V  +  +     
Sbjct: 74  PDDEDVRHVGHVVNPRLVEADGDEFRGPEGCLSLPGLEAGTVRFDRAVVEGVTSDGAPVR 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           +   G  A CLQHE DHL+G ++ D ++
Sbjct: 134 VEGTGFFARCLQHECDHLDGTVYADRVT 161


>gi|118594792|ref|ZP_01552139.1| peptide deformylase [Methylophilales bacterium HTCC2181]
 gi|118440570|gb|EAV47197.1| peptide deformylase [Methylophilales bacterium HTCC2181]
          Length = 171

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 80/152 (52%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K ++   DP+L   ++PIE +N+  +N +I++M+E M + DG GLAA QIG+  +LV
Sbjct: 1   MAIKDILKMGDPLLLSAAQPIEAVNTPELNQIIEDMIETMKANDGAGLAAPQIGLSIQLV 60

Query: 60  VIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +     +     A      V INP+II   ++     EGCLS+P  R  V R   I  + 
Sbjct: 61  IFGFDSNERYPDAEEVPFTVLINPEIIPLEEEMEDGWEGCLSVPGLRGVVPRYKSIHYKG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           +D   Q      DG  A  +QHE DHL G L+
Sbjct: 121 IDQFGQTIDRKVDGFHARVVQHECDHLIGKLY 152


>gi|224011581|ref|XP_002295565.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583596|gb|ACI64282.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 192

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 11/166 (6%)

Query: 9   FPDPILRRV-SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +P P LRRV + PI + +         ML +MY + G+GLAA QIG+   + V +  D  
Sbjct: 18  YPRPALRRVPNTPISQFDDAFQTKAKEMLMIMYESKGVGLAAPQIGLNENVFVYNPSDSK 77

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD-----VKRSAFITVRYMDCNAQHQ 122
           + +   +  NPKI  +S++  V QEGCLS+   R+D     V RSA+I   Y +   Q  
Sbjct: 78  NMER--IVCNPKITKYSEEVIVEQEGCLSM---RSDEVAGQVARSAWIECEYENEEGQKV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                   A   QHE DHL GIL  D      R+   + ++ L+ L
Sbjct: 133 RRRLKDFEARVFQHEYDHLKGILCYDRFPPEDREAAQENINTLLGL 178


>gi|327441112|dbj|BAK17477.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris
           StLB046]
          Length = 163

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 88/154 (57%), Gaps = 8/154 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  IL + +R +E I+ +I+ L+D++ + M   DG+G+AA QI V  R+ +
Sbjct: 1   MAIKEVVKNPANILSKKTREVEVIDENIIQLLDDLYDTMVENDGVGIAAPQINVDLRVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++L      ++ +  INP ++ T  ++  V  EGCLS PD    VKR  ++ +   D   
Sbjct: 61  VELG-----EDILEMINPIVLETRGEEEDV--EGCLSFPDLFGMVKRPTYVKIEASDREG 113

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +   + A+   A C+ HE+DHL+G+LF   ++R+
Sbjct: 114 RIYELEAEDFEARCILHEIDHLDGVLFDSKMTRV 147


>gi|332876814|ref|ZP_08444571.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685240|gb|EGJ58080.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 193

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 25/186 (13%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+  + + +L+  ++ +     ++  LI NM E M   +G GLAA Q+G   RL V 
Sbjct: 1   MKLPIFAYGNNVLKVKAQAVASDFPNLHELIANMWETMEKANGCGLAAPQVGKSLRLFVA 60

Query: 62  DLQ------------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           D Q                  D   R+    FINP+I   S++     EGCLS+P     
Sbjct: 61  DSQLLYEAMDERDKIAYFEKGDTGIRR---AFINPQIKNLSEEQWEEAEGCLSLPFLSGK 117

Query: 104 VKRSAFITVRYMDCNAQHQIIYA--DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           V RS  + + Y   N Q + I     G+ A  + HE DHL GIL+ID +  L + ++  K
Sbjct: 118 VARSWSVELSYQ--NEQFETITETFSGMTARVILHEYDHLEGILYIDRVKPLAKKLMQSK 175

Query: 162 MSKLVQ 167
           + KL++
Sbjct: 176 LQKLLK 181


>gi|323489535|ref|ZP_08094762.1| peptide deformylase [Planococcus donghaensis MPA1U2]
 gi|323396666|gb|EGA89485.1| peptide deformylase [Planococcus donghaensis MPA1U2]
          Length = 170

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  P+ +L     P+   + ++  L+D+M E M  +DG+G+AA Q+G   R+ +
Sbjct: 1   MAIRTVVKHPNKVLETNCEPVTVFDKNLSVLLDDMHETMVESDGVGIAAPQVGEAVRVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D ++    + P+  +NP+++ F +      EGCLS P    +V+R   I ++  + +  
Sbjct: 61  VDFRE---GQEPIEMVNPELVLF-EGAETDIEGCLSFPGIFGEVERYDHIKIKAQERDGS 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A+G  A  + HE+DHL+G+LF   +++
Sbjct: 117 WYELEAEGYEARAILHEMDHLDGVLFTSKITK 148


>gi|163941605|ref|YP_001646489.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|229013051|ref|ZP_04170216.1| Peptide deformylase [Bacillus mycoides DSM 2048]
 gi|229061470|ref|ZP_04198815.1| Peptide deformylase [Bacillus cereus AH603]
 gi|229134675|ref|ZP_04263484.1| Peptide deformylase [Bacillus cereus BDRD-ST196]
 gi|229168607|ref|ZP_04296330.1| Peptide deformylase [Bacillus cereus AH621]
 gi|163863802|gb|ABY44861.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|228615013|gb|EEK72115.1| Peptide deformylase [Bacillus cereus AH621]
 gi|228648721|gb|EEL04747.1| Peptide deformylase [Bacillus cereus BDRD-ST196]
 gi|228717893|gb|EEL69541.1| Peptide deformylase [Bacillus cereus AH603]
 gi|228748305|gb|EEL98165.1| Peptide deformylase [Bacillus mycoides DSM 2048]
          Length = 156

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPVILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKIFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           AD  LA  +QHE+DHL+G+LF   + R
Sbjct: 122 ADDFLARAIQHEIDHLHGVLFTSKVKR 148


>gi|288958776|ref|YP_003449117.1| peptide deformylase 2 [Azospirillum sp. B510]
 gi|288911084|dbj|BAI72573.1| peptide deformylase 2 [Azospirillum sp. B510]
          Length = 190

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 5   PLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+    +PILR++++PI +  +  I  L  +M+  M    G+GLAA Q+    R++V  +
Sbjct: 5   PIARMGNPILRQIAQPIADPTDPAIARLAADMIATMLDAPGVGLAAPQVSESCRIIVFRV 64

Query: 64  ---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
              +         V +NP I   +DD ++  EGCLSIP  R  V R   I  R    +  
Sbjct: 65  PADRGEGEEVANTVLVNPVIEPLTDDMALGWEGCLSIPGLRGLVPRHTRIRYRGHGLDGA 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
                A G  A  +QHE+DHL+G+L++D +  L+  + T++M
Sbjct: 125 RIEREASGFHARVVQHEVDHLDGVLYLDRMDDLRLLVCTEEM 166


>gi|239939651|ref|ZP_04691588.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           15998]
 gi|239986135|ref|ZP_04706799.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           11379]
          Length = 181

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 2/149 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + + +  DP+L R    +      +  LI++M   MY+  G+GLAA QIGV  ++ V D 
Sbjct: 14  REMSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            D    ++    +NP+++  +D  +V   EGCLS+P   A  +R     V  +    +  
Sbjct: 74  PDDDDVRHLGHVVNPELVE-ADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            I   G  A CLQHE DHL G ++ D L+
Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYPDRLT 161


>gi|296141405|ref|YP_003648648.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
 gi|296029539|gb|ADG80309.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
          Length = 198

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 85/176 (48%), Gaps = 23/176 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           P+VI  DP+L   + P+E     + +++I+ L+D+MLE M   +G+GLA  Q+G   RL 
Sbjct: 5   PIVIVGDPVLHTPTTPVELDADGRPDAEIVALLDDMLETMDRANGVGLAGNQVGRDLRLF 64

Query: 60  VIDLQDH-AHRKNPMVFINPKIITFS---------DDFSVYQEGCLSIPDYRADVKRSAF 109
           V D  D   H +     INP + T           DD+    EGCLS+P       R+ +
Sbjct: 65  VYDCPDEETHERRRGEVINPVLTTSEIPETMPDPDDDW----EGCLSVPGESFPTGRADW 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMITKK 161
             V   D N +   I   G  A  LQHE  HL+G L+ D L    +R  +  I K+
Sbjct: 121 AKVVGTDRNGEKVEIEGTGFFARMLQHETGHLDGFLYTDVLVGRYARQAKKFIKKQ 176


>gi|257062237|ref|YP_003140125.1| peptide deformylase [Cyanothece sp. PCC 8802]
 gi|256592403|gb|ACV03290.1| peptide deformylase [Cyanothece sp. PCC 8802]
          Length = 178

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 6/147 (4%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           +PILR+ ++ I +I + ++  LID ++       G+G+AA Q+    RL ++    +   
Sbjct: 12  NPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILASHPNPRY 71

Query: 70  KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            N     P+  INP+I++ S +     EGCLS+P  R  V R  ++ V Y D   Q Q  
Sbjct: 72  PNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDRFGQFQQQ 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
                +A   QHELDHLNG++F+D + 
Sbjct: 132 KLTDFVARIFQHELDHLNGLVFLDRVE 158


>gi|182440102|ref|YP_001827821.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780771|ref|ZP_08240036.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1]
 gi|178468618|dbj|BAG23138.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326661104|gb|EGE45950.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1]
          Length = 181

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 2/151 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + + +  DP+L R    +      +  L+++M   MY+  G+GLAA QIGV  ++ V D 
Sbjct: 14  REMSLLGDPLLHRPCEDVTDFGPPLAKLVEDMFATMYAAQGVGLAANQIGVPLKVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            D    ++    +NP+++  +D  +V   EGCLS+P   A   R     V  +    +  
Sbjct: 74  PDDDDVRHLGHVVNPELVE-ADGLTVRGPEGCLSLPGLEAGTDRFDHAVVEGLTMTGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            I   G  A CLQHE DHL G ++ D L+ L
Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYTDRLTGL 163


>gi|134102367|ref|YP_001108028.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|291009319|ref|ZP_06567292.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914990|emb|CAM05103.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338]
          Length = 166

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 5/143 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           F DP+LR  + P+   +  + +++ ++L+ + +    GLAA QIGV  R    ++     
Sbjct: 9   FGDPVLRTPAEPVTVFDDRLRSVVADLLDTVDAPGHAGLAAPQIGVGIRAFSYNVDGEIG 68

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                  +NP+++  S++     EGCLS+P+   D  R+    VR +D + +   +   G
Sbjct: 69  -----YVVNPEVVELSEEQQEGPEGCLSVPELWFDTPRARHAVVRGVDADNEPVTVSGSG 123

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           L+A CLQHE DHL+G++++  L+
Sbjct: 124 LMARCLQHETDHLDGMIYVQRLA 146


>gi|312141214|ref|YP_004008550.1| peptide deformylase def [Rhodococcus equi 103S]
 gi|325673956|ref|ZP_08153646.1| peptide deformylase [Rhodococcus equi ATCC 33707]
 gi|311890553|emb|CBH49871.1| peptide deformylase Def [Rhodococcus equi 103S]
 gi|325555221|gb|EGD24893.1| peptide deformylase [Rhodococcus equi ATCC 33707]
          Length = 205

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 20/168 (11%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I  DP+L   ++P+ +  +++ +LI +M E M + +G+GLAA Q+GV  RL V D  
Sbjct: 5   PIRIVGDPVLHEPTKPVTESPAELADLIRDMYETMDAANGVGLAANQVGVAKRLFVYDCP 64

Query: 65  DHAHRK--------------NPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           D+A  K              NP++  +  P+ +   DD     EGCLS+P  +    R+ 
Sbjct: 65  DYAAGKDASGKPVMRRGCVVNPVLETSEIPETMPDEDDDV---EGCLSVPGEQFPTGRAD 121

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
           +  V   D +     I   G  A  LQHE  HL+G L++D L  R KR
Sbjct: 122 WAKVTGTDEHGNPVEIEGHGFFARMLQHETGHLDGFLYVDVLIGRNKR 169


>gi|254384297|ref|ZP_04999640.1| peptide deformylase 2 [Streptomyces sp. Mg1]
 gi|194343185|gb|EDX24151.1| peptide deformylase 2 [Streptomyces sp. Mg1]
          Length = 185

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 73/148 (49%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + + +  DP+L      + +    +  LI++M   MY+ +G+GLAA QIGV  R+ V D 
Sbjct: 14  RTMSLLGDPVLHSACAEVTEFGPVLDRLIEDMFATMYAAEGVGLAANQIGVGQRVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    ++    +NP+++    D     EGCLS+P   A   R     V  +  +     
Sbjct: 74  PDDDDVRHVGHIVNPRLVAADGDEIRGPEGCLSLPGLEAGTDRFDRAVVEGVTSDGAPVR 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           +   G  A CLQHE DHL+G ++ D ++
Sbjct: 134 VEGTGFFARCLQHECDHLDGTVYADRVT 161


>gi|18043802|gb|AAH19912.1| Peptide deformylase (mitochondrial) [Homo sapiens]
          Length = 243

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L +  
Sbjct: 72  DPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEAL 131

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            R+ P               VF+NP +         + EGC S+  + A V R   + + 
Sbjct: 132 CRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 191

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D N +  +  A G  A  +QHE+DHL G LFID +
Sbjct: 192 GLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 228


>gi|323456767|gb|EGB12633.1| hypothetical protein AURANDRAFT_14540 [Aureococcus anophagefferens]
          Length = 181

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHA 67
           +P P+LR     I   + D       M+ +MY  DG+GLAA Q+G+  R  V +   D  
Sbjct: 18  YPMPVLRGPCADIVDFDDDFKQTCKEMMSIMYQADGVGLAATQVGLWKRFFVYNPTGDRL 77

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLS--IPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            +    + +NP+I  + +  +  +EGCLS    +    ++RS  I V Y+D   + +   
Sbjct: 78  MKPYERIVVNPRITKYGEATADEEEGCLSSRSENCAGVIRRSLDIWVEYVDERNKKRTKK 137

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             G  A   QHE DH+ G+L ID LS   R  +  ++ ++V
Sbjct: 138 LSGFEARVFQHEYDHIEGVLHIDRLSPEDRAKVEPELERMV 178


>gi|226304981|ref|YP_002764939.1| peptide deformylase [Rhodococcus erythropolis PR4]
 gi|226184096|dbj|BAH32200.1| peptide deformylase [Rhodococcus erythropolis PR4]
          Length = 199

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 15/157 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ I  DP+L + + P+ +  ++I  LI +M E M + +G+GLAA Q+GV  R+ V D  
Sbjct: 5   PIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVSLRVFVYDCP 64

Query: 64  -QDHAHRKNPMVFINPKIITF---------SDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             D +  +   V +NP + T           +DF    EGCLS+P  +    R+ +  V 
Sbjct: 65  GDDRSSERRRGVVVNPVLETSEIPQTMPDPEEDF----EGCLSVPGEQFPTGRADWAKVT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             D +     +   G  A  LQHE  HL+G L+ D L
Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVL 157


>gi|11641243|ref|NP_071736.1| peptide deformylase, mitochondrial precursor [Homo sapiens]
 gi|17433054|sp|Q9HBH1|DEFM_HUMAN RecName: Full=Peptide deformylase, mitochondrial; AltName:
           Full=Polypeptide deformylase; Flags: Precursor
 gi|11320944|gb|AAG33968.1|AF239156_1 peptide deformylase-like protein [Homo sapiens]
 gi|13195254|gb|AAK15624.1|AF322879_1 polypeptide deformylase-like protein [Homo sapiens]
 gi|38230771|gb|AAR14341.1| peptide deformylase [synthetic construct]
 gi|119603671|gb|EAW83265.1| hCG2027080, isoform CRA_a [Homo sapiens]
 gi|119603674|gb|EAW83268.1| hCG2027080, isoform CRA_a [Homo sapiens]
          Length = 243

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L +  
Sbjct: 72  DPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEAL 131

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            R+ P               VF+NP +         + EGC S+  + A V R   + + 
Sbjct: 132 CRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 191

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D N +  +  A G  A  +QHE+DHL G LFID +
Sbjct: 192 GLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 228


>gi|318061364|ref|ZP_07980085.1| peptide deformylase [Streptomyces sp. SA3_actG]
 gi|318077742|ref|ZP_07985074.1| peptide deformylase [Streptomyces sp. SA3_actF]
          Length = 242

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 2/142 (1%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
             ++  L+ +M   MY  +G GLAA Q+ V  RL V D  D    ++    +NP I   +
Sbjct: 76  TPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEGARHVGHVLNPVIDEAA 135

Query: 85  DDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
              ++    EGCLS+P  + ++ R+    VR +D + +   I   G  A CLQHE DHLN
Sbjct: 136 SGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEGTGYFARCLQHETDHLN 195

Query: 143 GILFIDHLSRLKRDMITKKMSK 164
           GIL++D L R  R  +   M++
Sbjct: 196 GILYVDRLGRRARRTVLTDMAE 217


>gi|288817783|ref|YP_003432130.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|288787182|dbj|BAI68929.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|308751381|gb|ADO44864.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
          Length = 168

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 7/148 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHA 67
           +PD  L+  S+ +          +++++  M S+ G +G+AA Q+ V  R++V+D     
Sbjct: 9   YPDERLKIPSKEVSDFGKFFSEFLESLVFTMRSSPGCVGIAAPQVNVHKRVIVVDTSISK 68

Query: 68  HRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           H++N +     V +NP I+    +  V +EGCLS+PDY  +VKR  +I V  +D      
Sbjct: 69  HKENKLSHGLLVLVNPIILQREGEI-VIREGCLSVPDYTGNVKRHYWIKVSALDVKGNPV 127

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150
               +G  A  +QHE+DHL+G +F++ L
Sbjct: 128 EFETEGFEAVVIQHEIDHLDGKVFLERL 155


>gi|291443077|ref|ZP_06582467.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291346024|gb|EFE72928.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 205

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +  DP+L R    +      +  LI++M   MY+  G+GLAA QIGV  ++ V D  D
Sbjct: 40  MSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYDCPD 99

Query: 66  HAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               ++    +NP+++  +D  +V   EGCLS+P   A  +R     V  +    +   I
Sbjct: 100 DDDVRHLGHVVNPELVE-ADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPVRI 158

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
              G  A CLQHE DHL G ++ D L+
Sbjct: 159 AGTGWFARCLQHECDHLEGTVYPDRLT 185


>gi|221481821|gb|EEE20191.1| peptide deformylase, putative [Toxoplasma gondii GT1]
          Length = 353

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 2/145 (1%)

Query: 10  PDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQDHA 67
           P  +LR  + P     + +   L  ++L VMY   G+GLAA Q+GV  +++V +   D  
Sbjct: 191 PHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIVWNPTGDVR 250

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                 VF+NP++++         EGCLS+P   A V+R     VRY       + +   
Sbjct: 251 ESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEGIQREVTLS 310

Query: 128 GLLATCLQHELDHLNGILFIDHLSR 152
           GL A  +QHE+DHL+GILF+D + R
Sbjct: 311 GLEARVVQHEIDHLHGILFVDRVHR 335


>gi|332518959|ref|ZP_08395426.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4]
 gi|332044807|gb|EGI81000.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4]
          Length = 215

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 14/149 (9%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD------GIGLAAVQIGVLYRLVVIDLQDH 66
           +LR  S  ++  ++D+  +++  ++ +Y+T       G+G+AA Q+GVL    VI +Q  
Sbjct: 65  LLRSKSAYVKPDSTDV--VLNTFIKRLYATVRDSISLGVGIAAPQVGVLKN--VIWVQRF 120

Query: 67  AHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADV--KRSAFITVRYMDCNAQHQI 123
              + P  V++NPKII++S +    +EGCLSIP+ R DV   RS  + + Y   N +H I
Sbjct: 121 DKDEFPFEVYLNPKIISYSQEKQTRKEGCLSIPN-RTDVLNNRSKIVKIEYDKINGEHII 179

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152
                  A   QHE+DHLNGIL++DHL +
Sbjct: 180 ETITDFTAIIFQHEIDHLNGILYLDHLEK 208


>gi|229493717|ref|ZP_04387501.1| peptide deformylase [Rhodococcus erythropolis SK121]
 gi|229319386|gb|EEN85223.1| peptide deformylase [Rhodococcus erythropolis SK121]
          Length = 199

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 15/157 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+ I  DP+L + + P+ +  ++I  LI +M E M + +G+GLAA Q+GV  R+ V D  
Sbjct: 5   PIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVPLRVFVYDCP 64

Query: 64  -QDHAHRKNPMVFINPKIITFS---------DDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             D +  +   V +NP + T           +DF    EGCLS+P  +    R+ +  V 
Sbjct: 65  GDDRSSERRRGVVVNPVLETSEIPQTMPDPDEDF----EGCLSVPGEQFPTGRADWAKVT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             D +     +   G  A  LQHE  HL+G L+ D L
Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVL 157


>gi|330470474|ref|YP_004408217.1| formylmethionine deformylase [Verrucosispora maris AB-18-032]
 gi|328813445|gb|AEB47617.1| formylmethionine deformylase [Verrucosispora maris AB-18-032]
          Length = 195

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 6/152 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDL 63
           P+V  P P+L R    ++    + + L  +++  M  + G +GLAA Q+GV  ++  +D+
Sbjct: 33  PVVSAPHPVLSRAGAQVDPTAEETVRLAADLVATMRVSPGCVGLAAPQVGVGAQVFAVDV 92

Query: 64  QDHAHR---KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             HA         V  N +++  +  +   +EGC+S+PD   DVKR++ + V      + 
Sbjct: 93  TGHAKAVTVHGTFVLCNARVVE-ATRWKAGREGCMSVPDLTGDVKRASRLVVEGALPGSG 151

Query: 121 HQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
            Q+ +  DG  A  LQHE+DH  G+LF+D ++
Sbjct: 152 EQVRLVTDGFEARALQHEIDHCAGLLFLDRVA 183


>gi|162148854|ref|YP_001603315.1| peptide deformylase 2 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545397|ref|YP_002277626.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787431|emb|CAP57026.1| putative peptide deformylase 2 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533074|gb|ACI53011.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 176

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 70/140 (50%), Gaps = 6/140 (4%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--IDLQDHAHRK 70
           +LRR     +    DI  LID+M+E M    G GLAA Q+ V  RL V  +  +  A   
Sbjct: 14  LLRRADEVADPTAPDIARLIDDMIETMEDARGAGLAAPQVHVSLRLFVYRVPAERSAGGD 73

Query: 71  NP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
           +P     V INP +    D+ ++  EGCLSIP  R  V R   I    +D   Q     A
Sbjct: 74  DPPRETSVLINPVLSLVDDEMALRPEGCLSIPGLRGMVPRHVRIAYSGLDRAGQAVQGVA 133

Query: 127 DGLLATCLQHELDHLNGILF 146
            G LA  LQHE DHL+GIL+
Sbjct: 134 SGFLANVLQHEYDHLDGILY 153


>gi|293189708|ref|ZP_06608424.1| peptide deformylase [Actinomyces odontolyticus F0309]
 gi|292821298|gb|EFF80241.1| peptide deformylase [Actinomyces odontolyticus F0309]
          Length = 212

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 32/178 (17%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV-----LYRLV 59
           P+ I  +P+L R + PI+  +S++ +L+ +M+E M++  G+GLAA Q+GV     ++R  
Sbjct: 5   PICITGEPVLHRAAAPIDSFDSELRDLVADMIETMHAAPGVGLAAPQVGVGSQVFVWRYG 64

Query: 60  VIDLQDHAHR------KNPM---------VFINP------------KIITFSDDFSVYQE 92
                D  +R      + P          V +NP             I+    D ++  E
Sbjct: 65  GAGSFDTQYRDVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIALESE 124

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           GCLS+P Y   ++R+    +R  D +     + A G LA   QHE DHL G L++D L
Sbjct: 125 GCLSVPGYGYPLRRALGAILRGYDVDGNAIEVRARGWLARIFQHEYDHLQGTLYVDRL 182


>gi|333027512|ref|ZP_08455576.1| putative peptide deformylase [Streptomyces sp. Tu6071]
 gi|332747364|gb|EGJ77805.1| putative peptide deformylase [Streptomyces sp. Tu6071]
          Length = 213

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           + RR +        ++  L+ +M   MY  +G GLAA Q+ V  RL V D  D    ++ 
Sbjct: 35  LARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEGARHV 94

Query: 73  MVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              +NP I   +   ++    EGCLS+P  + ++ R+    VR +D + +   I   G  
Sbjct: 95  GHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEGTGYF 154

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A CLQHE DHLNGIL++D L+R  R  +   M++
Sbjct: 155 ARCLQHETDHLNGILYVDRLARRARRTVLTDMAE 188


>gi|283457827|ref|YP_003362425.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
 gi|283133840|dbj|BAI64605.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
          Length = 214

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 5/152 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR V  PI   + D+  LID+MLE MY   G+GLA  Q+G+  ++      D     
Sbjct: 27  DPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFTFGGIDDRE-- 84

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                INP ++   ++     EGCLS+P  ++   R  +  V  +D + +  ++  +GL 
Sbjct: 85  --GYIINP-VLEVGEEDQEGGEGCLSVPGQKSATPRKNWARVTGVDRHGEPLVLEGEGLF 141

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           A  LQHE DHL+G LFID L    R  + + +
Sbjct: 142 ARMLQHETDHLHGKLFIDRLVGEDRQRVMRAL 173


>gi|111222219|ref|YP_713013.1| peptide deformylase 2 [Frankia alni ACN14a]
 gi|111149751|emb|CAJ61443.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [Frankia
           alni ACN14a]
          Length = 190

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 5/165 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63
           P+    DP+LR  +  +   ++ +  L+ +M++ MY   G+GLAA QIGV  R+ V D+ 
Sbjct: 3   PIRTVGDPVLRTPTALVTTFDAALARLVHDMIDTMYDAPGVGLAAPQIGVGLRVFVFDVG 62

Query: 64  ---QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +D    + P V +NP +   +D +    QEGCLS+P       R+   +VR +D   
Sbjct: 63  YDPRDVTVPRVPRVVVNPVLELAADGEQQEGQEGCLSVPGLHFSTTRALRASVRGVDVTG 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                  +GLLA C QHE+DHL+G L++D L+  +R    + + +
Sbjct: 123 AAVEYAGEGLLARCFQHEVDHLDGTLYLDRLTGEERRAAVQALRE 167


>gi|317106741|dbj|BAJ53237.1| JHL06P13.18 [Jatropha curcas]
          Length = 274

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+L   +R +  E+I S+ I  +ID+M++ M    G+GLAA QIGV  R++V++     
Sbjct: 93  DPVLHEPAREVDPEEIGSERIQKIIDDMIKAMRMAPGVGLAAPQIGVPLRIIVLEDTKEY 152

Query: 63  ------LQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                  +  A  + P   +V +NPK+   S+  + + EGCLS+  +RA V+R   + V 
Sbjct: 153 IRYAPKEETKAQDRRPFDLLVILNPKLEKKSNRTAFFFEGCLSVDGFRAVVERYLDVEVT 212

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +    Q   + A G  A  LQHE DHL+G L++D +
Sbjct: 213 GLSRYGQPIKVNASGWQARILQHECDHLDGTLYVDKM 249


>gi|302518710|ref|ZP_07271052.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|302427605|gb|EFK99420.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 213

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           + RR +        ++  L+ +M   MY  +G GLAA Q+ V  RL V D  D    ++ 
Sbjct: 35  LARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEGARHV 94

Query: 73  MVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              +NP I   +   ++    EGCLS+P  + ++ R+    VR +D + +   I   G  
Sbjct: 95  GHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEGTGYF 154

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A CLQHE DHLNGIL++D L+R  R  +   M++
Sbjct: 155 ARCLQHETDHLNGILYVDRLARRARRTVLTDMAE 188


>gi|302553425|ref|ZP_07305767.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302471043|gb|EFL34136.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 208

 Score = 87.4 bits (215), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +L +  R + +   D+  LID+M   MY  DG GLAA Q+GV  RL V D  D    ++ 
Sbjct: 36  VLHKPCRDVTEFGPDLAALIDDMFLTMYIADGAGLAANQVGVDLRLFVYDCPDDDGVRHV 95

Query: 73  MVFINPKIITFSDDFSVY---QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +NP +              EGCLS+P    +V R     VR  D + +  +I   G 
Sbjct: 96  GHVVNPVLEPLDASHRRLLDDSEGCLSVPGAVMNVPRPDRAVVRGYDRDGEPLVIEGTGY 155

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            A CL HE DH+NG +++D LS   R    ++M+
Sbjct: 156 FARCLAHETDHVNGQVYLDRLSGRDRKEALRQMA 189


>gi|320533868|ref|ZP_08034450.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133894|gb|EFW26260.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 175

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+LR     I  I+  +  L++++LE +      GLAA QIG+  R   
Sbjct: 13  MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NP+I+  S D++    EGCLS+P      +R+ +     +D + 
Sbjct: 73  WNIDGEIG-----YILNPRIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDG 127

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +  ++  + L+A C+QHE DHL G L++D L R  R    K++
Sbjct: 128 REVVVEGEELMARCIQHECDHLEGRLYLDRLDRKNRAKAMKEL 170


>gi|294786951|ref|ZP_06752205.1| peptide deformylase [Parascardovia denticolens F0305]
 gi|294485784|gb|EFG33418.1| peptide deformylase [Parascardovia denticolens F0305]
          Length = 163

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR V  PI  I   + NL+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MTIRDIRIVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NPKI+  S +     EGCLS+P      +R+ +  V  +D + +
Sbjct: 61  YNIDGKVG-----YVLNPKIVARSGE-QYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   G++   LQHE DHL+G +++D L + +R    + M +
Sbjct: 115 KIVLEGKGIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRR 158


>gi|226438315|pdb|3G5K|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438316|pdb|3G5K|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438317|pdb|3G5K|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438318|pdb|3G5K|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438319|pdb|3G5P|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438320|pdb|3G5P|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438321|pdb|3G5P|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438322|pdb|3G5P|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
          Length = 183

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L +  
Sbjct: 12  DPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEAL 71

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            R+ P               VF+NP +         + EGC S+  + A V R   + + 
Sbjct: 72  CRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D N +  +  A G  A  +QHE+DHL G LFID +
Sbjct: 132 GLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 168


>gi|21222943|ref|NP_628722.1| polypetide deformylase [Streptomyces coelicolor A3(2)]
 gi|256785943|ref|ZP_05524374.1| polypetide deformylase [Streptomyces lividans TK24]
 gi|289769835|ref|ZP_06529213.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|8134401|sp|Q9XAQ2|DEF3_STRCO RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName:
           Full=Polypeptide deformylase 3
 gi|5042279|emb|CAB44533.1| putative polypetide deformylase [Streptomyces coelicolor A3(2)]
 gi|289700034|gb|EFD67463.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 208

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 11/158 (6%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH------ 66
           +L R  R + +   D+  LID+M   MY  +G GLAA Q+GV  RL V D  D       
Sbjct: 36  VLHRPCRDVTEFGPDLAALIDDMFRTMYVAEGAGLAANQVGVDLRLFVYDCPDDEGVRHV 95

Query: 67  AHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            H  NP++  ++P      D+     EGCLS+P     V R     VR +D +    ++ 
Sbjct: 96  GHLVNPVLDALDPAARRLLDE----GEGCLSVPGAVMAVPRPDRAVVRGLDKDGVPLLVE 151

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             G  A CL HE DH+NG +++D LS  +R    ++ +
Sbjct: 152 GTGYFARCLAHETDHVNGHVYLDRLSGRERKAALRQSA 189


>gi|184200810|ref|YP_001855017.1| peptide deformylase [Kocuria rhizophila DC2201]
 gi|183581040|dbj|BAG29511.1| peptide deformylase [Kocuria rhizophila DC2201]
          Length = 249

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAHR 69
           DP+LR  ++ + + +  +  L+ +M+E MY+  G+GLAA Q+GV  ++    ++ D  H 
Sbjct: 11  DPVLRTPAQEVPQFDESLRTLVRDMVETMYAVGGVGLAAPQVGVGLQIFTWGIEGDEGH- 69

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
                 +NP++ +   +     EGCLS+P    +  R    T+  +D + +     A GL
Sbjct: 70  -----VVNPRL-SVGHEPQDGGEGCLSVPGLSYETPRMDSATLTGVDMHGRPVHRDATGL 123

Query: 130 LATCLQHELDHLNGILFIDHL 150
           LA C QHE DHL G L++D L
Sbjct: 124 LARCFQHETDHLRGTLYVDRL 144


>gi|255325949|ref|ZP_05367039.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
 gi|255296964|gb|EET76291.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
          Length = 201

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+LR V  PI   + D+  LID+MLE MY   G+GLA  Q+G+  ++      D     
Sbjct: 11  DPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFTFGGIDDRE-- 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                INP ++   ++     EGCLS+P  ++   R  +  V  +D   +  ++  +GL 
Sbjct: 69  --GYIINP-VLEVGEEDQEGGEGCLSVPGQKSATPRKNWARVTGVDRRGEPLVLEGEGLF 125

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           A  LQHE DHL+G LFID L    R  + + +
Sbjct: 126 ARMLQHETDHLHGKLFIDRLVGEDRQRVMRAL 157


>gi|308802341|ref|XP_003078484.1| peptide deformylase (ISS) [Ostreococcus tauri]
 gi|116056936|emb|CAL53225.1| peptide deformylase (ISS) [Ostreococcus tauri]
          Length = 175

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 2/104 (1%)

Query: 4   KPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +PL I  +P P LR  + PIE  ++++  L   M ++MY T G GLAA Q+GV YR++V 
Sbjct: 67  EPLAIAKYPAPCLRAKNAPIETFDANLEQLSKAMFKIMYETVGCGLAAPQVGVNYRMMVY 126

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           +      +   +V  NPKI+ +S +   ++EGCLS P   ADV+
Sbjct: 127 NEAGEPGKGREVVLCNPKIVKYSKEKDFFEEGCLSFPKMYADVE 170


>gi|315226589|ref|ZP_07868377.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105]
 gi|315120721|gb|EFT83853.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105]
          Length = 176

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 6/157 (3%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           I PDP+LR V  PI  I   + NL+ ++L+ +      GL+A QIGV  R    ++    
Sbjct: 21  IVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFSYNIDGKV 80

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                   +NPKI+  S +     EGCLS+P      +R+ +  V  +D + +  ++   
Sbjct: 81  G-----YVLNPKIVARSGE-QYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGKKIVLEGK 134

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           G++   LQHE DHL+G +++D L + +R    + M +
Sbjct: 135 GIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRR 171


>gi|302540350|ref|ZP_07292692.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302457968|gb|EFL21061.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 185

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 2/144 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +PL +  D  LR     +   ++ +  L++++   MY+  G+GLAA QIGV  R+ V D 
Sbjct: 17  RPLRLLGDQALRAPCEEVGDFDAALARLVEDLFATMYAAGGVGLAANQIGVGLRVFVYDC 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            D   R++    +NP++   +D  +V   EGCLS+P   +   R     V  +    +  
Sbjct: 77  PDDEDRRHLGHVVNPRLAE-ADGVTVRGTEGCLSLPGIESGTPRFDRAVVEGVTATGEPV 135

Query: 123 IIYADGLLATCLQHELDHLNGILF 146
            +   G  A CLQHE DHL+G LF
Sbjct: 136 RVEGSGFFARCLQHECDHLDGGLF 159


>gi|317056476|ref|YP_004104943.1| peptide deformylase [Ruminococcus albus 7]
 gi|315448745|gb|ADU22309.1| peptide deformylase [Ruminococcus albus 7]
          Length = 155

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 4/138 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D  L +V RP+EK +  +   +D+M E +   +G+GLAA Q+ +L R  +ID+ D     
Sbjct: 11  DETLHKVCRPVEKFDEKLWTWLDDMKETLAQANGVGLAAPQVAILRRFCIIDVGD----G 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           N    INP+I   S++     EGCLS P     V R   +  +  D N +   +    L 
Sbjct: 67  NVYELINPEITWKSEETQRVLEGCLSCPGQWGYVTRPMSVKFKAQDRNGEWYEMEVSELF 126

Query: 131 ATCLQHELDHLNGILFID 148
           A  + HE  HL+G LF +
Sbjct: 127 AQAVCHETAHLDGHLFTE 144


>gi|297844442|ref|XP_002890102.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335944|gb|EFH66361.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 270

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 17/162 (10%)

Query: 6   LVIFPDPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+L   +R +  E+I S+ I  +ID+M++VM    G+GLAA QIGV  R++V++
Sbjct: 84  IVAAGDPVLHEKAREVDPEEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLE 143

Query: 63  --------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                         L       + MV +NP +   S+  +++ EGCLS+  +RA V+R  
Sbjct: 144 DTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVNGFRAAVERYL 203

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + V   D   +   + A G  A  LQHE DHL+G L++D +
Sbjct: 204 EVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKM 245


>gi|302525482|ref|ZP_07277824.1| peptide deformylase [Streptomyces sp. AA4]
 gi|302434377|gb|EFL06193.1| peptide deformylase [Streptomyces sp. AA4]
          Length = 166

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L  F DP+L+ V  P+   +S I  L+ ++L+ +      GLAA QIGV  R+  
Sbjct: 1   MAMRELRYFGDPVLKSVCDPVTTFDSKIEALVKDLLDSVQPEGRAGLAAPQIGVGLRVFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+            INP+I+  S++     EGCLS+P+      R+    VR +D   +
Sbjct: 61  YDVGGLTG-----YVINPEIVHLSEETHEIGEGCLSVPELWFPTVRAKHAVVRGVDLRNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +    +LA CLQHE DHL+G L++D L+
Sbjct: 116 PIEVEGVDVLAQCLQHETDHLDGKLYLDRLT 146


>gi|169631265|ref|YP_001704914.1| peptide deformylase [Mycobacterium abscessus ATCC 19977]
 gi|238688918|sp|B1MIN9|DEF_MYCA9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169243232|emb|CAM64260.1| Peptide deformylase [Mycobacterium abscessus]
          Length = 197

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           P+ I  DP+L   ++P+       +  D+  LI NM E M + +G+GLAA QIGV  RL 
Sbjct: 5   PIRIVGDPVLHTPTQPVPVGPDGSLPDDLPELIANMYETMDAANGVGLAANQIGVPLRLF 64

Query: 60  VIDLQD--HAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITV 112
           V D  +      ++  V INP + T        D    +EGCLS+P       R+ +  V
Sbjct: 65  VYDCAETRGGGTRHRGVVINPVLETSEIPETMPDPDDDEEGCLSVPGESFPTGRAGWARV 124

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             +D + +   +  + L A  LQHE  HL+G L+ID L
Sbjct: 125 TGLDADGKEVTLEGNDLFARMLQHETGHLDGFLYIDKL 162


>gi|221120519|ref|XP_002163626.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 196

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 21/159 (13%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           DP+LR+V+R  P+E IN+ D  +LI  M+ +M S  G G+AA Q+GV  +++ I+  +H 
Sbjct: 28  DPVLRKVAREVPLEYINTQDFKDLITKMILIMRSNKGQGIAAPQVGVDLQVIAIEFTEHD 87

Query: 67  ------AHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
                  + KN +           +FINPK+   + + + ++EGCLSI      V+R   
Sbjct: 88  LEMATKQYGKNEVEKRQMRTFPLHIFINPKLKIINYETTRFEEGCLSILGTVGVVQRYRE 147

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           + + +++    + ++  DG LA  +QHE+ HL G L +D
Sbjct: 148 VQLEFVNEKGVNVLMNFDGWLARMVQHEMHHLKGFLIVD 186


>gi|297626643|ref|YP_003688406.1| polypeptide deformylase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922408|emb|CBL56980.1| Polypeptide deformylase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 206

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 5/160 (3%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           I+R  +RP+   +  +  LI +M + M + DG+GLAA Q+     L V +  D   +   
Sbjct: 23  IMRSQTRPVTTFDDTLAQLIADMFKTMAAADGVGLAAPQVDSDLALFVFNCPDIHDKLVY 82

Query: 73  MVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            V  NP ++T  +    +    QEGCLS P     + R  F      D       +   G
Sbjct: 83  GVMCNP-VVTLPEGKDRHLVSAQEGCLSWPGAYQSLARPDFAVCEGQDETGAPVRVEGTG 141

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LLA CLQHE DHL+G +F D LS+  R  + ++  +L  L
Sbjct: 142 LLARCLQHETDHLHGTVFGDRLSKRARRRLDQEKEELAPL 181


>gi|311104085|ref|YP_003976938.1| peptide deformylase 1 [Achromobacter xylosoxidans A8]
 gi|310758774|gb|ADP14223.1| peptide deformylase 1 [Achromobacter xylosoxidans A8]
          Length = 177

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 10/158 (6%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68
           DP L RV+ P+E+ ++ ++  LID+M E M +  G+GLAA QIGV  +LV+    ++  +
Sbjct: 10  DPRLLRVAAPVERFDTPELHALIDDMFETMAAAQGVGLAAPQIGVDLQLVIFGFDRNERY 69

Query: 69  RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              P V      NP I   SD+     EGCLS+P  R  V R  +  +RY   +   Q+I
Sbjct: 70  PDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGLVPR--YRRIRYSGRDPYGQLI 127

Query: 125 --YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              ADG  A  +QHE DHL G L+   +    +   T+
Sbjct: 128 EREADGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165


>gi|227495080|ref|ZP_03925396.1| peptide deformylase [Actinomyces coleocanis DSM 15436]
 gi|226831532|gb|EEH63915.1| peptide deformylase [Actinomyces coleocanis DSM 15436]
          Length = 163

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 7/166 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MTYREIRVIGDPILRTPCEWITDIDDKVKGLVEDLLENVDMDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            ++            +NPK++  S  +++    EGCLS+P      KR+ +  V  ++ +
Sbjct: 61  WNIDGDIG-----YVLNPKLVEASMEEEYQDGDEGCLSVPGLWFPTKRAWYARVEGINLD 115

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +  I+  + L+A CLQHE DHL G+L++D L R  R    K++ +
Sbjct: 116 GKKIIVEGEELMARCLQHECDHLEGMLYLDRLDRAMRRKAMKEVRE 161


>gi|221108715|ref|XP_002169101.1| PREDICTED: similar to CG31373 CG31373-PA, partial [Hydra
           magnipapillata]
          Length = 143

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 63/113 (55%), Gaps = 12/113 (10%)

Query: 51  QIGVLYRLVVID---LQDHAHRKNPM---------VFINPKIITFSDDFSVYQEGCLSIP 98
           QIG+  R  V+D   + + A  +  +         VFIN +II    D   Y+EGCLSIP
Sbjct: 2   QIGMDIRFFVVDGTPINEGAETEEDIDPSLIDFKKVFINAEIIEEDGDEWAYEEGCLSIP 61

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             RADV R  F+T+RY D +        +GL A  +QHE DH++GILF DHL+
Sbjct: 62  GVRADVYRPEFVTIRYFDTDWVEHTETYEGLAARIIQHEYDHIDGILFTDHLT 114


>gi|323359861|ref|YP_004226257.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
 gi|323276232|dbj|BAJ76377.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
          Length = 188

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 11/171 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I  DP+L   +  +++I  ++  L+ +M E M +  G+GLAA Q+GV  R+     +
Sbjct: 5   PIRIMGDPVLHAPAARVDEITEEVRTLVADMFETMDAAPGVGLAAPQVGVGLRIFTYTYE 64

Query: 65  DHAHRK------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D           NP ++I P    + D      EGCLS P  R  ++RS    +  +D +
Sbjct: 65  DDEGLPWRGVVINPELWIRPLEPGYPDPDD-ESEGCLSFPGERFPLRRSDAALLTGVDLD 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   I   G  A  LQHE DHL+GIL++D L     D  ++ ++K+ + R
Sbjct: 124 GRPVRIEVTGWRARILQHEFDHLDGILYVDRLD----DEDSRVVAKIAKKR 170


>gi|282863355|ref|ZP_06272414.1| peptide deformylase [Streptomyces sp. ACTE]
 gi|282561690|gb|EFB67233.1| peptide deformylase [Streptomyces sp. ACTE]
          Length = 219

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 24/187 (12%)

Query: 1   MVKKPLVIFPD--PILRR-------------VSRPIEKINS----DIMNLIDNMLEVMYS 41
           ++ +P+  +PD  P  RR             +SRP +++ S     +  LID+M   MY 
Sbjct: 17  VLGRPVDTYPDLAPEARRGSVRRITVVGEEVLSRPCQEVTSFGSPGLAALIDDMFVTMYV 76

Query: 42  TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSI 97
            DG GLAA Q+ V  RL V D  D    ++    +NP ++   D  S       EGCLS+
Sbjct: 77  ADGAGLAANQVDVDLRLFVYDCPDDQGVRHVGHIVNP-VLDQPDPGSRRLVDDSEGCLSV 135

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
           P     + R+   TVR  D +    +I   G  A CLQHE DHL G  ++D LS+  R  
Sbjct: 136 PGASMTLPRTDRATVRGFDKDGNPLVIEGTGYFARCLQHESDHLVGHTYLDRLSKRDRKD 195

Query: 158 ITKKMSK 164
             ++M +
Sbjct: 196 ALRQMEE 202


>gi|229019065|ref|ZP_04175903.1| Peptide deformylase [Bacillus cereus AH1273]
 gi|229025309|ref|ZP_04181728.1| Peptide deformylase [Bacillus cereus AH1272]
 gi|228736000|gb|EEL86576.1| Peptide deformylase [Bacillus cereus AH1272]
 gi|228742233|gb|EEL92395.1| Peptide deformylase [Bacillus cereus AH1273]
          Length = 156

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIDD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPVILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKIFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A   LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AKDFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|326383421|ref|ZP_08205108.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395]
 gi|326197827|gb|EGD55014.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395]
          Length = 197

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 15/158 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           P+ I  +P+L + + P+E     K +++I+ L+D+M + M + +G+GLAA QIG   R+ 
Sbjct: 5   PICIIGEPVLHQPTTPVELDADSKPSAEIVTLLDDMYDTMDAANGVGLAANQIGEGLRMF 64

Query: 60  VIDLQDHAHRK-----NPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           V D  D   R+     NP++  +  P+ +   DD     EGCLS+P       R+ +  V
Sbjct: 65  VYDCPDGGVRRRGEVINPVLETSEIPETMPDPDD---NDEGCLSVPGEGFPTGRADWAKV 121

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              D N     I  +G  A  LQHE  HL+G L++D L
Sbjct: 122 VGTDRNGDPVEIEGNGFFARMLQHETGHLDGFLYVDVL 159


>gi|238061428|ref|ZP_04606137.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149]
 gi|237883239|gb|EEP72067.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149]
          Length = 186

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 6/153 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62
           +P+V  PDP+L R    ++  + ++  L  +++  M  + G +GLAA Q+GV  ++  +D
Sbjct: 23  RPVVSAPDPVLSRPGPEVDPTSDEVARLAADLIATMRVSPGCVGLAAPQVGVSAQVFAVD 82

Query: 63  LQDHAHR---KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +  H          V  N +++  S  +   +EGC+S+PD   DVKR++ + V  +   +
Sbjct: 83  VTGHPKAVTVHGTFVLCNARVVEGSR-WKSGREGCMSVPDLTGDVKRASRLVVEGLLPGS 141

Query: 120 QHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
              + +  DG  A  LQHE+DH  G+LF+D ++
Sbjct: 142 GAPVRLVTDGFEARALQHEIDHCLGLLFLDRVA 174


>gi|296231447|ref|XP_002761154.1| PREDICTED: peptide deformylase, mitochondrial-like [Callithrix
           jacchus]
          Length = 243

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR V+ P+E+      ++  L+  +++VM     +GL+A Q+GV  +++ ++L    
Sbjct: 72  DPVLRGVAAPVEREQLGGPELQRLVQRLVQVMRRQHCVGLSAPQLGVPRQVLALELTQAL 131

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            +K P               VF+NP +         + EGC S+  + A V R   + + 
Sbjct: 132 CQKTPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVEIS 191

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++ N +  +  A G  A  +QHE+DHL G LFID +
Sbjct: 192 GLNPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 228


>gi|152981418|ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
           Marseille]
 gi|151281495|gb|ABR89905.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
           Marseille]
          Length = 178

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 10/144 (6%)

Query: 11  DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L RV+ P+++  +  ++ LI++M + M++ +G GLAA QIGV  RLV+   + +   
Sbjct: 11  DPRLLRVAEPVKEFGTPELDALIEDMFDTMHAANGAGLAAPQIGVNLRLVIYGFKQNTRY 70

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INPK+   S +     EGCLS+P  R  V R  F  + Y   +    +I
Sbjct: 71  PDAPPVPETVLINPKLRPLSAEMEDGWEGCLSVPGLRGVVPR--FSALHYDGFDQYGNVI 128

Query: 125 Y--ADGLLATCLQHELDHLNGILF 146
              ADG  A  +QHE DHL+GIL+
Sbjct: 129 SRDADGFHARVVQHECDHLDGILY 152


>gi|308235005|ref|ZP_07665742.1| peptide deformylase [Gardnerella vaginalis ATCC 14018]
 gi|311114690|ref|YP_003985911.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
 gi|310946184|gb|ADP38888.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
          Length = 162

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR    PI +I   + NL++++LE +      GL+A QIG+  R   
Sbjct: 1   MTIRQIRIVPDPVLRTPCDPIREITPAVRNLVEDLLETVNDPGRAGLSANQIGISLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +++ H         +NP I   S +     EGCLS+P      +R+ +   + +D + +
Sbjct: 61  YNIEGHIG-----YILNPVIEELSGE-QYGDEGCLSVPRLWYKTRRADYARAKGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             ++   GL+A  +QHE DHL+G +++D   RL++D+   +   L QLR+
Sbjct: 115 TIVLEGKGLMARMIQHECDHLDGHVYLD---RLEKDV---RKQALRQLRN 158


>gi|224054132|ref|XP_002298107.1| peptide deformylase [Populus trichocarpa]
 gi|222845365|gb|EEE82912.1| peptide deformylase [Populus trichocarpa]
          Length = 299

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+L   +R   P E  +  I  +ID+M++VM    G+GLAA QIG+  R++V++     
Sbjct: 118 DPVLHEPAREVDPKEIGSERIQKIIDDMVKVMRMAPGVGLAAPQIGIPLRIIVLEDTAEY 177

Query: 63  ------LQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                  +  A  + P   +V +NPK+   S+  + + EGCLS+  +RA V+R   + V 
Sbjct: 178 IGYAPKNETKAQDRRPFDLLVIVNPKLKKKSNRTAFFFEGCLSVDGFRAIVERHLDVEVI 237

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +  + Q   + A G  A  LQHE DHL G L++D +
Sbjct: 238 GLSRDGQPIKVDASGWQARILQHECDHLEGTLYVDKM 274


>gi|184201105|ref|YP_001855312.1| peptide deformylase [Kocuria rhizophila DC2201]
 gi|183581335|dbj|BAG29806.1| peptide deformylase [Kocuria rhizophila DC2201]
          Length = 189

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 9/170 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI   P+L R +  + + ++ +  L+ ++ E M ++ G+GLAA QIGV  R+  
Sbjct: 1   MSIRPIVISGHPVLHRPAARVTEFDAALRTLVADLHETMDASHGVGLAAPQIGVGLRIFT 60

Query: 61  IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              ++          +NP     KI     D     EGCLS+P     +KR+ ++ +   
Sbjct: 61  YLYENEDGVPPRGTLVNPVLTTGKISEVVPDPDEESEGCLSVPGQAWPLKRADWVRIAGQ 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMITKK 161
           D N       A+G  A  +QHE DHL+G L++D L    SR  R  I ++
Sbjct: 121 DENGDPVAFEANGWFARVMQHEYDHLDGKLYVDRLNPKWSRRARKAIRRE 170


>gi|323486114|ref|ZP_08091445.1| polypeptide deformylase [Clostridium symbiosum WAL-14163]
 gi|323400681|gb|EGA93048.1| polypeptide deformylase [Clostridium symbiosum WAL-14163]
          Length = 150

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 7/139 (5%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D ILR+  + +++++  I  ++D+ML+ + ++ +G  LAA Q+G+L RLVVI+     + 
Sbjct: 11  DEILRKKCKEVKEVDDKIRVMLDDMLDTLRHTENGAALAANQVGILKRLVVIE-----YC 65

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +  +NPKII  S       EGCLS P    +  R   +TV+ +D   Q  I+  +G 
Sbjct: 66  GELLKLVNPKIIGRSGTQECI-EGCLSFPGKFVNTIRPQKVTVQALDEYGQEVILTGEGE 124

Query: 130 LATCLQHELDHLNGILFID 148
           +A C  HEL+HL+G +F+D
Sbjct: 125 MAKCYCHELEHLDGEIFLD 143


>gi|302867673|ref|YP_003836310.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315505926|ref|YP_004084813.1| peptide deformylase [Micromonospora sp. L5]
 gi|302570532|gb|ADL46734.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315412545|gb|ADU10662.1| peptide deformylase [Micromonospora sp. L5]
          Length = 167

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 9/149 (6%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62
           +P+ I  DP+LR  S P+   ++++  L+ ++++ +    G  G+AA QIGV  ++ V D
Sbjct: 2   RPIRIIGDPVLRTPSEPVTSFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVNAQVFVYD 61

Query: 63  LQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              H  H  NP + +       SD+    +EGCLSIP       R+   T    D + + 
Sbjct: 62  ADGHRGHMINPTLEV-------SDELQDDEEGCLSIPGLYFPTPRALHATAHGYDQHGEP 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             +   G LA  LQHE DHL G L++D L
Sbjct: 115 LTVTGSGFLARALQHETDHLRGRLYVDTL 143


>gi|195444659|ref|XP_002069969.1| GK11285 [Drosophila willistoni]
 gi|194166054|gb|EDW80955.1| GK11285 [Drosophila willistoni]
          Length = 173

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 17/155 (10%)

Query: 11  DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LRR +  +  +K+NS +I   ID M+ V+   D +G+AA QIGV  R++V++  +  
Sbjct: 14  DPVLRRRAEEVSGDKVNSPEIKETIDCMVHVLRHYDCVGVAAPQIGVPLRIIVMEFHEGK 73

Query: 68  HRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             + P               VFINP++   +D    + EGC+S+  Y A V+R   + V+
Sbjct: 74  KNQFPAEIYAERKMSTLSLAVFINPELEILNDKQHKHPEGCMSVRGYSAQVERHDRVRVK 133

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            +        +  +G  A   QHE+DHLNGI++I+
Sbjct: 134 GIGMMGTPSELELEGWSARIAQHEMDHLNGIIYIE 168


>gi|325261897|ref|ZP_08128635.1| peptide deformylase [Clostridium sp. D5]
 gi|324033351|gb|EGB94628.1| peptide deformylase [Clostridium sp. D5]
          Length = 158

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D IL +  + + K+      LI++ML+ MY   G+GLAA Q+GVL  +V 
Sbjct: 1   MAIREVRMIGDEILTKQCKEVTKVTLRTKMLIEDMLDTMYEKMGVGLAAPQVGVLKNIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP II  S +    +EGCLS+P     V R   + VR ++ + +
Sbjct: 61  IDVGE-----GPIVLINPVIIEASGE-QTGEEGCLSVPGKWGIVTRPDHVKVRALNEDME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              +  +GLLA    HE+ HL+G L++D +
Sbjct: 115 EFEMEGEGLLARAFCHEIAHLSGELYVDRV 144


>gi|302563993|ref|NP_001181771.1| peptide deformylase, mitochondrial [Macaca mulatta]
          Length = 243

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L +  
Sbjct: 72  DPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPLQVLALELPEAL 131

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            R+ P               VF+NP +         + EGC S+  + A V R   + + 
Sbjct: 132 CREFPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 191

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D N +     A G  A  +QHE+DHL G LFID +
Sbjct: 192 GLDPNGEQVAWQASGWAARIIQHEMDHLQGCLFIDKM 228


>gi|159038089|ref|YP_001537342.1| peptide deformylase [Salinispora arenicola CNS-205]
 gi|157916924|gb|ABV98351.1| peptide deformylase [Salinispora arenicola CNS-205]
          Length = 168

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  +P+ +  DP+LR  + P+   ++++  L+ ++++ +    G  G+AA QIGV  R+ 
Sbjct: 1   MTMRPIRLIGDPVLRTPAEPVTSFDAELRALVADLMDTLLGAPGRAGVAAPQIGVSARVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D     HR +    +NP  +   D+     EGCLS+P       R+   T   +D + 
Sbjct: 61  VYDAD--GHRGH---LVNP-TLELGDEQQDDDEGCLSVPGLYFPTSRAMHATAHGVDQHG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Q   I   G LA  LQHE DHL G L++D L
Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTL 145


>gi|124267003|ref|YP_001021007.1| peptide deformylase [Methylibium petroleiphilum PM1]
 gi|124259778|gb|ABM94772.1| Peptide deformylase [Methylibium petroleiphilum PM1]
          Length = 177

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68
           DP L R++ P+ + ++  ++ LI++M + M + +G GLAA QIGV  +LV+    +   +
Sbjct: 11  DPRLLRIAHPVREFDTPALHALIEDMFDTMEAANGAGLAAPQIGVDLQLVIFGFTKSERY 70

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P     V INP+I   S+D     EGCLS+P  R  V R   I     D   +    
Sbjct: 71  PEAPPVPRTVLINPQITPLSEDLEDGWEGCLSVPGLRGVVPRHQRIRYTGFDPQGRRIER 130

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G+L+
Sbjct: 131 EAEGFHARVVQHECDHLAGVLY 152


>gi|255319189|ref|ZP_05360406.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262379692|ref|ZP_06072848.1| polypeptide deformylase [Acinetobacter radioresistens SH164]
 gi|255303582|gb|EET82782.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262299149|gb|EEY87062.1| polypeptide deformylase [Acinetobacter radioresistens SH164]
          Length = 159

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 16/139 (11%)

Query: 23  KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP--------- 72
           + N++ +  L   M   M   +G+G+AA Q+ +  R++++     A R NP         
Sbjct: 26  EFNTEWLRQLAQAMHTTMLEQNGVGIAAPQVYISKRIIIV-----ASRSNPRYPDAPEME 80

Query: 73  -MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V +NP+I+ FS + S+ +EGCLS+ D R  V+R+  + + Y+    +       G  A
Sbjct: 81  AVVMVNPEILEFSRETSLGEEGCLSVSDVRGTVERAETVKLCYLTLEGEPVETIYKGFPA 140

Query: 132 TCLQHELDHLNGILFIDHL 150
             +QHE+DHLNGILF++ L
Sbjct: 141 RIIQHEIDHLNGILFVERL 159


>gi|217974557|ref|YP_002359308.1| peptide deformylase [Shewanella baltica OS223]
 gi|217499692|gb|ACK47885.1| peptide deformylase [Shewanella baltica OS223]
          Length = 185

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL R +  +   ++++ +L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILGRTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +     A    P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY +   
Sbjct: 75  PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           + Q     G +A   QHE DHL GI  ++
Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLE 163


>gi|294669088|ref|ZP_06734174.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291309080|gb|EFE50323.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 91

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 56/85 (65%)

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
           +IT  +  + Y+EGCLS+P     V R+  +TV  +D   +   + ADGLLA C+QHELD
Sbjct: 1   MITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALDEKGEKFTLEADGLLAICIQHELD 60

Query: 140 HLNGILFIDHLSRLKRDMITKKMSK 164
           HL GI+F++HLS+LK+  I  K+ K
Sbjct: 61  HLMGIVFVEHLSQLKQGRIKTKLKK 85


>gi|299535919|ref|ZP_07049239.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
 gi|298728671|gb|EFI69226.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
          Length = 164

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P  +L      + +IN +I+ L+D++ + M   DG+G+AA QI V  R+ +
Sbjct: 1   MAIKKVIENPAKVLSTPCAEVTEINDEIITLLDDLYDTMVEYDGVGIAAPQIDVGLRVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      ++ +  INP ++  +D   V  EGCLS P    +V+R +++ +   D   +
Sbjct: 61  VEL---GEERDILEMINPTVVE-TDGAEVDIEGCLSFPGLYGEVERPSYVKIEACDREGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A G  A  + HE+DHL+G+LF   + R+
Sbjct: 117 VYELEAGGFDARAILHEIDHLDGVLFDSKIKRI 149


>gi|156303056|ref|XP_001617464.1| hypothetical protein NEMVEDRAFT_v1g78625 [Nematostella vectensis]
 gi|156193964|gb|EDO25364.1| predicted protein [Nematostella vectensis]
          Length = 135

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 66/124 (53%), Gaps = 12/124 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+  + +P+LR+VS  I K   ++   I +M E MY   G+GLAA Q+G+  RL VID +
Sbjct: 12  PIYGYGEPVLRKVSEEITKEYPNLKETIADMFETMYQAYGLGLAAPQVGLPIRLFVIDTE 71

Query: 65  -----DHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                D   ++          VFIN KI+    D   + EGCLSIPD R DV R   IT+
Sbjct: 72  PLADSDEVSKEEAEELKTFKKVFINAKILKEEGDVWGFNEGCLSIPDVREDVFRHETITI 131

Query: 113 RYMD 116
            Y D
Sbjct: 132 EYYD 135


>gi|270157701|ref|ZP_06186358.1| peptide deformylase [Legionella longbeachae D-4968]
 gi|269989726|gb|EEZ95980.1| peptide deformylase [Legionella longbeachae D-4968]
          Length = 172

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 10/150 (6%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +PILR+V+ PI   E     + +L+  M+++M     +G+AA QIGV  R++V     + 
Sbjct: 9   NPILRQVAEPINASEFGTPWLKSLVQTMIDIMAEKAAVGVAAPQIGVSKRVIVFGTS-YT 67

Query: 68  HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R+ P         INP +   S++     EGCL+  D   +V R+  I     D     
Sbjct: 68  KRRQPEYPIPDTALINPTLKVLSEEIQTDYEGCLNCDDIMGEVPRAMEIEYSGFDIEGNP 127

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
               A GL A  LQHE+DHL+GILFID + 
Sbjct: 128 VTKRARGLEARILQHEIDHLDGILFIDRIE 157


>gi|227874915|ref|ZP_03993067.1| peptide deformylase [Mobiluncus mulieris ATCC 35243]
 gi|269976483|ref|ZP_06183468.1| peptide deformylase [Mobiluncus mulieris 28-1]
 gi|306818239|ref|ZP_07451969.1| peptide deformylase [Mobiluncus mulieris ATCC 35239]
 gi|307701754|ref|ZP_07638768.1| peptide deformylase [Mobiluncus mulieris FB024-16]
 gi|227844492|gb|EEJ54649.1| peptide deformylase [Mobiluncus mulieris ATCC 35243]
 gi|269935284|gb|EEZ91833.1| peptide deformylase [Mobiluncus mulieris 28-1]
 gi|304648978|gb|EFM46273.1| peptide deformylase [Mobiluncus mulieris ATCC 35239]
 gi|307613012|gb|EFN92267.1| peptide deformylase [Mobiluncus mulieris FB024-16]
          Length = 164

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 13/170 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI----NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + + +  DP+LR    P E I    +  +  L++++LE +      GLAA QIGV  
Sbjct: 1   MAFREIRVVGDPVLRT---PCEWIKDPRDPGVKQLVEDLLENVDQEGRAGLAANQIGVSL 57

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           R    ++            +NPK++  S D++    EGCLS+P+     +R+ +  V  +
Sbjct: 58  RAFSWNIDGEIG-----YVLNPKLVEVSQDEYQDGDEGCLSVPNLFYPTERAWYARVEGI 112

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + +  ++  + L+  CLQHE DHL GIL+ID L R  R    +++ K+
Sbjct: 113 DLDGKPVVVEGEELMGRCLQHETDHLEGILYIDKLERKYRKAALQQVRKM 162


>gi|315604653|ref|ZP_07879716.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313665|gb|EFU61719.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 210

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 32/178 (17%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV-----LYRLV 59
           P+ I   P+L R++ P+E  +S++ +L+ +M++ M++  G+GLAA Q+GV     ++R  
Sbjct: 5   PICITGTPVLHRLAAPVESFDSELRDLVTDMIDTMHAAPGVGLAAPQVGVGSQVFVWRYA 64

Query: 60  VIDLQDHAHR------KNPM---------VFINP------------KIITFSDDFSVYQE 92
                D  +R      + P          V +NP             I+    D +   E
Sbjct: 65  GGGAFDTHYRDVLQLDEGPARGFNTVTSGVVVNPTLDLVWDTHGAGAILPAEPDIAHESE 124

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           GCLS+P Y   ++R+    +R  D       + A G LA   QHE DHL G L++D L
Sbjct: 125 GCLSVPGYGYPLRRALGAVLRGYDTRGNAIEVSARGWLARIFQHEYDHLQGTLYVDRL 182


>gi|284117858|ref|ZP_06386753.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829473|gb|EFC33840.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 160

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 14/143 (9%)

Query: 30  NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDF 87
             ID+M E M + +GIGLAA Q+    +L+V+  D QD        V INP+I+ +    
Sbjct: 17  QFIDDMFETMDAYEGIGLAAPQVSRSEQLIVMRCDGQDAIPET---VLINPRIVFYGPAQ 73

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           +   EGCLS+   R  V R + I V+ +D   +     A GL   C+QHE+DHL G LF+
Sbjct: 74  AEMWEGCLSVDGLRGKVTRPSSIRVQALDREGRSVDFEASGLFGVCIQHEMDHLIGKLFL 133

Query: 148 DHLSRLKRDMITKKMSKLVQLRD 170
           D ++ L         S L QL++
Sbjct: 134 DRMTDL---------SSLTQLKE 147


>gi|87162608|gb|ABD28403.1| Formylmethionine deformylase [Medicago truncatula]
          Length = 257

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           DP++   +R ++  +I SD I N+ID+M+ VM    G+G+AA QIG+  R++V++ ++  
Sbjct: 75  DPVIHEPAREVDHSEIKSDKIQNIIDDMILVMRKAPGVGVAAPQIGIPLRIIVLEDKEEF 134

Query: 67  ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                     A  + P   +V +NPK+   S+  + + EGCLS+  ++A V+R   + V 
Sbjct: 135 ICYNTEEETKAQDRRPFDLLVILNPKLKNKSNRTAFFFEGCLSVDRFQALVERYLDVEVT 194

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             D   +   I A G  A  LQHE DHL+G L++D +
Sbjct: 195 GFDRYGEPIKINASGWQARILQHECDHLDGTLYVDKM 231


>gi|237786237|ref|YP_002906942.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237759149|gb|ACR18399.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 220

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 28/189 (14%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   + P+ +   +I  L+ +M E +  + G+GLAA QIGV  RL V
Sbjct: 11  MTVRPIVIAGDPVLHNPTEPVTESPEEIAELVADMYETLELSHGVGLAANQIGVAKRLFV 70

Query: 61  IDL------------------QDHAHRK----NPMVFIN--PKIITFSDDFSVYQEGCLS 96
            D                   Q    RK    NP++  +  P+ +  +D      EGCLS
Sbjct: 71  YDCPDIEGPDGDSKSEEELKAQGGPRRKGCVVNPVLETSEIPETMPATDGSDA--EGCLS 128

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
           +P       R+ +  V   D + +   +   G  A CLQHE+ HL+G L+ D L  R  R
Sbjct: 129 VPGLDFPTGRAHWARVTGTDEHGEPVRVEGYGFFARCLQHEVGHLDGYLYTDMLIGRWAR 188

Query: 156 DMITKKMSK 164
            M  KK+ +
Sbjct: 189 -MAKKKIKR 196


>gi|302870289|ref|YP_003838926.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315503435|ref|YP_004082322.1| formylmethionine deformylase [Micromonospora sp. L5]
 gi|302573148|gb|ADL49350.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315410054|gb|ADU08171.1| formylmethionine deformylase [Micromonospora sp. L5]
          Length = 187

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 84/153 (54%), Gaps = 6/153 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62
           + +V  P+P+L R    ++  +++++ L  +++  M  + G +GLAA Q+GV  ++  +D
Sbjct: 24  RAVVTAPEPVLSRPGPEVDPTSAEVVRLAADLVATMRVSPGCVGLAAPQVGVSAQVFAVD 83

Query: 63  LQDHAHR---KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR-YMDCN 118
           +  H          V  N +++  S  +   +EGC+S+PD   DVKR++ + V   +  +
Sbjct: 84  VTGHPKAVTVHGTFVLCNARVVEASR-WKAGREGCMSVPDLTGDVKRASRLVVEGALPGS 142

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +   +  DG  A  LQHE+DH  G+LF+D ++
Sbjct: 143 GEPVRLVTDGFEARALQHEIDHCAGLLFLDRVA 175


>gi|18394237|ref|NP_563974.1| PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase [Arabidopsis
           thaliana]
 gi|11320952|gb|AAG33973.1|AF250959_1 peptide deformylase-like protein [Arabidopsis thaliana]
 gi|332191194|gb|AEE29315.1| peptide deformylase 1A [Arabidopsis thaliana]
          Length = 269

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 17/162 (10%)

Query: 6   LVIFPDPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+L   +R   P E  +  I  +ID+M++VM    G+GLAA QIGV  R++V++
Sbjct: 83  IVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLE 142

Query: 63  --------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                         L       + MV +NP +   S+  +++ EGCLS+  +RA V+R  
Sbjct: 143 DTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYL 202

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + V   D   +   + A G  A  LQHE DHL+G L++D +
Sbjct: 203 EVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKM 244


>gi|119773777|ref|YP_926517.1| peptide deformylase [Shewanella amazonensis SB2B]
 gi|119766277|gb|ABL98847.1| Peptide deformylase [Shewanella amazonensis SB2B]
          Length = 174

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 5/152 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I  DP+L + + P+   +  +  L   ++  M    G+G+AA QIGV  RL ++  +
Sbjct: 8   PIAITGDPVLYQKAAPVTVFDDSLERLSQTLMATMLQAKGVGIAAPQIGVSQRLFIVASR 67

Query: 65  DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +     A    PMV +NP +++ S ++   +EGCLS+P  R  + R  ++  ++ D   
Sbjct: 68  PNERYPDAPLMEPMVMVNPALLSGSSEWESSEEGCLSVPGKRLSIARHRWVEAKWQDLQG 127

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                  DG +A   QHELDHL+GI  ++ ++
Sbjct: 128 NAYSGRLDGFIARIFQHELDHLDGITLLERVT 159


>gi|17433051|sp|Q9FV53|DEF1A_ARATH RecName: Full=Peptide deformylase 1A, chloroplastic; Short=AtDEF1;
           Short=AtPDF1A; Short=PDF 1A; AltName: Full=Polypeptide
           deformylase; Flags: Precursor
 gi|5103837|gb|AAD39667.1|AC007591_32 Simalar to gi|4377403 Polypeptide Deformylase from Chlamydia
           pneumoniae genome gb|AE001687 [Arabidopsis thaliana]
 gi|13605760|gb|AAK32873.1|AF361861_1 At1g15390/F9L1_34 [Arabidopsis thaliana]
 gi|22136570|gb|AAM91071.1| At1g15390/F9L1_34 [Arabidopsis thaliana]
          Length = 259

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 17/162 (10%)

Query: 6   LVIFPDPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+L   +R   P E  +  I  +ID+M++VM    G+GLAA QIGV  R++V++
Sbjct: 73  IVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLE 132

Query: 63  --------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                         L       + MV +NP +   S+  +++ EGCLS+  +RA V+R  
Sbjct: 133 DTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYL 192

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + V   D   +   + A G  A  LQHE DHL+G L++D +
Sbjct: 193 EVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKM 234


>gi|126649676|ref|ZP_01721912.1| peptide deformylase [Bacillus sp. B14905]
 gi|126593395|gb|EAZ87340.1| peptide deformylase [Bacillus sp. B14905]
          Length = 176

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 91/165 (55%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P  +L      + +IN +++ L+D++ + M   DG+G+AA QI +  R+ +
Sbjct: 13  MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      ++ +  +NP +I  +D   +  EGCLS P    +V+R +++ +   D   +
Sbjct: 73  VEL---GEERDILEMVNPTVIE-TDGAEIDIEGCLSFPGLYGEVERPSYVKIEACDREGR 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              + A G  A  + HE+DHL+G+LF    S++KR +  +++ ++
Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFD---SKIKRVITAEELEEM 170


>gi|269124846|ref|YP_003298216.1| peptide deformylase [Thermomonospora curvata DSM 43183]
 gi|268309804|gb|ACY96178.1| peptide deformylase [Thermomonospora curvata DSM 43183]
          Length = 178

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 78/152 (51%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+    DP+LR    P+   ++ +  L+D+M   MY+ +G GLAA QIGV  ++ V D 
Sbjct: 14  RPIRRLGDPVLRTECDPVRTFDAGLRRLVDDMFATMYAANGAGLAANQIGVSLQVFVYDC 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +D   R++    INP ++    D  V  EGCLS+P  R    R     V  +D + +   
Sbjct: 74  EDDLGRRHVGHVINPVLVAEDGDIVVEDEGCLSVPGLRFPTPRYRHAVVEGVDLDNKPLR 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           I   G  A CLQHE  HL G ++ID L    R
Sbjct: 134 IEGTGYFARCLQHETYHLRGGVYIDVLKGETR 165


>gi|76253777|ref|NP_001028902.1| hypothetical protein LOC619248 [Danio rerio]
 gi|66911060|gb|AAH97196.1| Zgc:114141 [Danio rerio]
 gi|148725884|emb|CAN87858.1| novel protein (zgc:114141) [Danio rerio]
          Length = 247

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR  +  +E       ++  +I  +++VM   + +GL+A QIGV  R++ ++     
Sbjct: 76  DPVLRSHAAEVEPGAIQGPEVQKVIKTLVKVMRKLECVGLSAPQIGVPLRILALEYPKKM 135

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             ++               M+FINP++        ++QE C SI  Y A V R   + V 
Sbjct: 136 LEESSTASVEARGLVAVPLMIFINPQLRVLDGRTVIFQEACESISGYSASVPRYVSVEVS 195

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++  A+     A G  A  LQHE+DHLNG+L+IDH+
Sbjct: 196 GLNEKAEEVSWKASGWPARILQHEMDHLNGVLYIDHM 232


>gi|295835488|ref|ZP_06822421.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|295825514|gb|EFG64289.1| peptide deformylase [Streptomyces sp. SPB74]
          Length = 221

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 14/169 (8%)

Query: 5   PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  + P E       +  L+  M   M    G+GLAA QIGV  RL V++
Sbjct: 32  PIVAAGDPVLRTPAAPYEGQLPGPLLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 91

Query: 63  ----LQDHAHR---KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
               + +   R   + P+   V +NP      +  +++ EGCLS+P ++A V R A + +
Sbjct: 92  DPATVPEEVRRMRGREPLPYRVLVNPHYAPAGERRALFYEGCLSVPGWQAVVARHAVVRL 151

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           R  D +         G  A  +QHE DHL+G L++D    L R + + +
Sbjct: 152 RAEDEHGTALDEEVGGWAARIVQHETDHLDGTLYVDRA--LPRSLTSNE 198


>gi|318061932|ref|ZP_07980653.1| polypeptide deformylase [Streptomyces sp. SA3_actG]
 gi|333028589|ref|ZP_08456653.1| putative polypeptide deformylase [Streptomyces sp. Tu6071]
 gi|332748441|gb|EGJ78882.1| putative polypeptide deformylase [Streptomyces sp. Tu6071]
          Length = 161

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           +R        +  L++++   MY+  G+GLAA QIG   R+ V D  D   R++    +N
Sbjct: 6   ARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYDCPDDEDRRHLGHLVN 65

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
           P+++          EGCLS+P   A   R     V     +   + +   G  A CLQHE
Sbjct: 66  PRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARRRVEGTGFFARCLQHE 125

Query: 138 LDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            DHL G L++D L   +   + ++  +    R
Sbjct: 126 YDHLEGGLYVDRLDARRHRKVLREAGRTGWGR 157


>gi|332653344|ref|ZP_08419089.1| peptide deformylase [Ruminococcaceae bacterium D16]
 gi|332518490|gb|EGJ48093.1| peptide deformylase [Ruminococcaceae bacterium D16]
          Length = 169

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 7/154 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV- 59
           M  + ++   +  L +V  P+ K +  + +LID+M E +    G+GLAA Q+G+L R+V 
Sbjct: 3   MAIREILTRGESALTKVCHPVTKFDQKLWDLIDDMKETLAEAGGVGLAAPQVGILRRVVI 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VI+  D       +  +NP+I+    +     EGCLS+P     VKR  ++ V+  D   
Sbjct: 63  VINEADEV-----LELVNPEIVAQQGEQDGL-EGCLSVPGLWGFVKRPEWVKVKAQDRFG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +       GL A C  HEL HL+G L+ +   +L
Sbjct: 117 KEYEAEGTGLTARCFCHELAHLDGHLYTELTDKL 150


>gi|323487022|ref|ZP_08092334.1| peptide deformylase [Clostridium symbiosum WAL-14163]
 gi|323692064|ref|ZP_08106311.1| peptide deformylase [Clostridium symbiosum WAL-14673]
 gi|323399670|gb|EGA92056.1| peptide deformylase [Clostridium symbiosum WAL-14163]
 gi|323503864|gb|EGB19679.1| peptide deformylase [Clostridium symbiosum WAL-14673]
          Length = 159

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 5/137 (3%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D +L +  +P++++      LI++M E MY  +G+GLAA Q+G+  ++VVID+ D     
Sbjct: 11  DEVLTKECKPVKEMTEHTAELIEDMFETMYEANGVGLAAPQVGIRKQIVVIDVDDG---- 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           N  V INP+I+  ++      EGCLS+P     V R   + V+ ++   +   +  +GLL
Sbjct: 67  NQYVLINPEIVE-TEGSQTGSEGCLSVPGKTGVVTRPEKVKVKALNEKMEEFELEGEGLL 125

Query: 131 ATCLQHELDHLNGILFI 147
           A  + HE DHL G L++
Sbjct: 126 ARAICHECDHLKGQLYV 142


>gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase
           [Herbaspirillum seropedicae SmR1]
 gi|300074269|gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68
           DP L R ++P+ +  + ++  L+D+M + M + +G GLAA QIGV  +LV+    Q+  +
Sbjct: 11  DPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLVIFGFGQNQRY 70

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              P     V INP +   S+      EGCLS+P  R  V R + +  + +D N +    
Sbjct: 71  PDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQGVDQNGEPIDR 130

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             +G  A  +QHE DHL GIL+   +   +R   T+
Sbjct: 131 SVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTE 166


>gi|90410436|ref|ZP_01218452.1| hypothetical polypeptide deformylase [Photobacterium profundum
           3TCK]
 gi|90328677|gb|EAS44961.1| hypothetical polypeptide deformylase [Photobacterium profundum
           3TCK]
          Length = 178

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)

Query: 11  DPILRRVSRPIEKINSDIMN----LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----- 61
           +P+LR    P E +++  +N    L+ ++ ++M S  G+G+AA Q+G   R  ++     
Sbjct: 12  NPLLRV---PAEALSTTQINVTLPLLASLEQIMLSHQGVGIAAPQVGESLRAFIVASRPN 68

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D   HA    P + INP+++  SD      EGCLSIP  RA + R   I V Y++     
Sbjct: 69  DRYPHAPLMEPTIMINPELLWHSDLMEKDWEGCLSIPGIRAKINRYTHIRVSYLNVLGDV 128

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                   +A   QHELDHLNGI+F+D   +L
Sbjct: 129 IETEFTDFIARIFQHELDHLNGIVFLDRADKL 160


>gi|78101135|pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
           Precipitant
 gi|78101136|pdb|1ZXZ|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
           Precipitant
 gi|78101137|pdb|1ZY0|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-6000
 gi|78101138|pdb|1ZY0|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-6000
 gi|78101139|pdb|1ZY1|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
 gi|78101140|pdb|1ZY1|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
          Length = 197

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 17/162 (10%)

Query: 6   LVIFPDPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+L   +R   P E  +  I  +ID+M++VM    G+GLAA QIGV  R++V++
Sbjct: 6   IVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLE 65

Query: 63  --------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                         L       + MV +NP +   S+  +++ EGCLS+  +RA V+R  
Sbjct: 66  DTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYL 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + V   D   +   + A G  A  LQHE DHL+G L++D +
Sbjct: 126 EVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKM 167


>gi|296116575|ref|ZP_06835185.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976787|gb|EFG83555.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 178

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 7/159 (4%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-- 70
           +LRR     +    DI++L+ +M+E M    G+GLAA Q+    R+ V  + D       
Sbjct: 14  LLRRADAVTDPTAPDIVHLVADMIETMEDAGGVGLAAPQVHRSCRVFVYRVPDTRSSGAP 73

Query: 71  -----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P V INP +    ++  +  EGCLSIP  R  V R   +     D   +     
Sbjct: 74  DDQPCGPQVLINPHLTPIGEETVLRLEGCLSIPGLRGWVPRHTRVAYHGYDAQGRQVKGT 133

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A G LA  +QHE DHLNGIL+   ++ L +     +M++
Sbjct: 134 ASGFLANVMQHEYDHLNGILYPMRMNDLAKMGFDTEMAR 172


>gi|159463808|ref|XP_001690134.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284122|gb|EDP09872.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 250

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 4/131 (3%)

Query: 41  STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           S DG+GLAA Q+GV  RL+V +        N  + +NP+I+       + +EGCLS P  
Sbjct: 95  SDDGVGLAAPQVGVNVRLMVFNPMGRDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRI 154

Query: 101 RADVKRSAFITVRYMDCNAQH-QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             DV+RS  I V+ +D   Q  ++   D  +A   QHE DHL G+LF D   R+K  ++ 
Sbjct: 155 YGDVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEFDHLQGVLFHD---RMKPSVLE 211

Query: 160 KKMSKLVQLRD 170
               +LV L +
Sbjct: 212 TVRPELVALEE 222


>gi|297158757|gb|ADI08469.1| peptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 178

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 76/158 (48%), Gaps = 15/158 (9%)

Query: 17  VSRPIEKINS----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH------ 66
           +SRP  ++      ++  LID+M   MY  DG GLAA Q+GV  RL V D  D       
Sbjct: 6   LSRPCREVTEFGTPELSALIDDMFLTMYVADGAGLAANQVGVDLRLFVYDCPDDYGIRHV 65

Query: 67  AHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            H  NP++ +  P      DDF    EGCLS+P     V R+     R  D +    +I 
Sbjct: 66  GHIINPVLDLPGPGSRRLVDDF----EGCLSVPGAAMAVPRTDRAVARGFDKDGDPLVIE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             G  A CLQHE DH+ G  ++D LS+  R    ++M 
Sbjct: 122 GLGYFARCLQHETDHVVGHTYLDRLSKRDRKAALRQME 159


>gi|255629341|gb|ACU15015.1| unknown [Glycine max]
          Length = 223

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 14/144 (9%)

Query: 21  IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID--LQDHAHRKNP------ 72
           IE  +  +  +ID+M+ VM    G+GLAA QIG+  R++V++  +Q  A+  N       
Sbjct: 55  IEIKSERVQKIIDDMVRVMRKAPGVGLAAPQIGIPLRIIVLEDKIQYMAYYSNQELKAQD 114

Query: 73  ------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                 +V +NPK+   +   +++ EGCLS+P Y A V+R   + V   D   +   I A
Sbjct: 115 RTPFDLLVILNPKLKNTTTRTALFFEGCLSVPGYSAVVERYLDVEVAGFDRYGEPIKINA 174

Query: 127 DGLLATCLQHELDHLNGILFIDHL 150
            G  A  LQHE DHL+G L++D +
Sbjct: 175 TGWQARILQHECDHLDGTLYVDKM 198


>gi|119960758|ref|YP_947936.1| peptide deformylase [Arthrobacter aurescens TC1]
 gi|119947617|gb|ABM06528.1| peptide deformylase [Arthrobacter aurescens TC1]
          Length = 224

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 12/149 (8%)

Query: 12  PILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV------IDL 63
           P+LR+++ P +    ++++   ++ M EVM+   G+GLAA Q+G+  +L V      +D 
Sbjct: 43  PVLRQLAAPYDGQIDDAELAAFLERMKEVMHDAPGVGLAAPQLGIPLQLAVLEDKYEVDP 102

Query: 64  QDHAHR-KNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +  A R + P+ F   +NP+      + + + EGCLS+  Y+A V R   + +RY +   
Sbjct: 103 ESAAVRHREPLEFFAIVNPQYRPLGTETASFYEGCLSVSGYQAVVTRHRNVELRYTNPAG 162

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           +    +  G  A  +QHE DHL GIL++D
Sbjct: 163 EPVEEWFSGWQARIVQHETDHLRGILYLD 191


>gi|294790924|ref|ZP_06756082.1| peptide deformylase [Scardovia inopinata F0304]
 gi|294458821|gb|EFG27174.1| peptide deformylase [Scardovia inopinata F0304]
          Length = 162

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 6/153 (3%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PDPILR V  PI  I   I +L+ ++ + +      GL+A QIGV  R    +++     
Sbjct: 10  PDPILRTVCDPITTITPAIRSLVRDLTDTVDDPGRAGLSANQIGVGLRAFSFNIEGKVD- 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
                 +NP+++  S +     EGCLS+P      +R+ +  V  +D N   +++   GL
Sbjct: 69  ----YILNPRLVKTSGE-QYGDEGCLSVPGLWYKTRRADYARVEGIDLNGHKKVLEGHGL 123

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +   LQHE DHL+G +++D L + +R    + M
Sbjct: 124 MGRMLQHECDHLDGHVYLDRLEKEERRAALRYM 156


>gi|254431098|ref|ZP_05044801.1| peptide deformylase [Cyanobium sp. PCC 7001]
 gi|197625551|gb|EDY38110.1| peptide deformylase [Cyanobium sp. PCC 7001]
          Length = 180

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 12/161 (7%)

Query: 1   MVKKPLVIFPDPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P++   DP LR+V+   P + I S ++  L+D++ + M + DG GLAA QIGV  R
Sbjct: 1   MAIRPVLRLGDPFLRQVAVAVPRQAIGSPELSALLDDLRDTMAARDGAGLAAPQIGVALR 60

Query: 58  LVVIDLQDHA-HRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +V+     +  + + P     V INP +       S   EGCLS+P  R  V R  +  +
Sbjct: 61  VVIFGFTTNPRYPEAPPIPDTVLINPVLTPLGSARSSGWEGCLSVPGLRGLVPR--WDRI 118

Query: 113 RYMDCNAQHQIIY--ADGLLATCLQHELDHLNGILFIDHLS 151
           RY   + Q + +    +G  A  +QHE DHL+G+LF D + 
Sbjct: 119 RYTGLDEQGRPLQREVEGFHARVVQHECDHLDGVLFPDRIE 159


>gi|284031698|ref|YP_003381629.1| peptide deformylase [Kribbella flavida DSM 17836]
 gi|283810991|gb|ADB32830.1| Peptide deformylase [Kribbella flavida DSM 17836]
          Length = 240

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 18/170 (10%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P +    D  + + ++ +   M +  G+GLAA Q+GV  R+ V  
Sbjct: 51  PIVQLGDPVLRRKAEPFDGQFDDGLLKDFVELLRRTMLAAPGVGLAAPQVGVPLRIAV-- 108

Query: 63  LQD---------HAHRKNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           L+D          A  + P+ F+   NP+      D   + EGCLS+P +   V R   +
Sbjct: 109 LEDPATVSAEVAEARERYPLEFLAVLNPEYAPRGRDKRGFYEGCLSMPGFTGVVSRPLKV 168

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              Y D     + +   G  A   QHE DHLNG L++D +    R M T 
Sbjct: 169 DAGYSDLTGARRRLTLSGWQARIFQHETDHLNGRLYVDQVE--PRSMATS 216


>gi|238059170|ref|ZP_04603879.1| peptide deformylase [Micromonospora sp. ATCC 39149]
 gi|237880981|gb|EEP69809.1| peptide deformylase [Micromonospora sp. ATCC 39149]
          Length = 175

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  +P+ I  DP+LR    P+   ++++  L+ ++++ +    G  G+AA QIGV  ++ 
Sbjct: 8   MTMRPIRIIGDPVLRTACEPVTTFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVSAQVF 67

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V +     HR +    INP  +  SD+     EGCLSIP       R+   T    D + 
Sbjct: 68  VYNAD--GHRGH---MINP-TLELSDETQGDDEGCLSIPGLYFPTPRALHATAHGFDQHG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +   I   G LA  LQHE DHL+G L++D L
Sbjct: 122 EPLTICGSGFLARALQHETDHLHGRLYVDTL 152


>gi|319763298|ref|YP_004127235.1| peptide deformylase [Alicycliphilus denitrificans BC]
 gi|330825493|ref|YP_004388796.1| peptide deformylase [Alicycliphilus denitrificans K601]
 gi|317117859|gb|ADV00348.1| peptide deformylase [Alicycliphilus denitrificans BC]
 gi|329310865|gb|AEB85280.1| peptide deformylase [Alicycliphilus denitrificans K601]
          Length = 179

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 19/159 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M ++ ++   DP L RV+RP+ + ++D +  L+ ++L+ M++ +G GLAA QIGV  ++V
Sbjct: 1   MTQRTILKMGDPRLLRVARPVTRFDTDELHGLLADLLDTMHAANGAGLAAPQIGVDLQVV 60

Query: 60  VIDLQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           V      +   NP           V INP +    D+ S+  EGCLS+P  R  V R  +
Sbjct: 61  VFG----SGAPNPRYPDAPVVPRTVLINPVVTPIGDEESLDWEGCLSVPGMRGMVPR--W 114

Query: 110 ITVRYMDCNAQHQII--YADGLLATCLQHELDHLNGILF 146
            TVRY   + + + I     G  A  +QHE DHL G L+
Sbjct: 115 QTVRYTGFDVRGEPIDRTVSGFHARVVQHECDHLWGKLY 153


>gi|329938533|ref|ZP_08287958.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
 gi|329302506|gb|EGG46397.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
          Length = 218

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P E ++++ +++  +  +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 28  PIVAAGDPVLRRGAEPFEGQLDAPLLDRFLAALRATMHAAPGVGLAAPQVGVPLRIAVIE 87

Query: 63  LQD-------HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                      A  + P    V +NP      ++ + + EGCLS+P ++A V R A + +
Sbjct: 88  DPAPVPEEVRSARGRVPQPYRVLVNPSYEAVGEERAAFFEGCLSVPGWQAVVARHARVRL 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           R +D           G  A  +QHE DHL+G L++D 
Sbjct: 148 RGLDARGAVLDEEFAGWPARIVQHETDHLDGTLYLDR 184


>gi|297572267|ref|YP_003698041.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932614|gb|ADH93422.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595]
          Length = 224

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+L + S  +   +  +  L  +M E   +  G+GLAA QIG+   + V  + 
Sbjct: 4   PIHVYGSPVLHKTSAKVTVFDEKLATLAQDMFETCEAAPGVGLAAPQIGLDLAMFVW-MY 62

Query: 65  DHAHRKNPM--VFINPKIITFSDDF----SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D    K P   V +NP ++    D        +EGCLS P Y+  ++RS    +R  D  
Sbjct: 63  DGPEHKGPQRGVAVNPTLLIEPVDVFEPGPADEEGCLSFPGYQYGLRRSPRAVLRAQDEK 122

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   + A G  A  LQHE DHL G +++D L+      + K M +
Sbjct: 123 GEWYDLEATGWFARILQHEYDHLKGRIYVDRLTGKPAHQVEKVMKR 168


>gi|163842029|ref|YP_001626434.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
 gi|162955505|gb|ABY25020.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
          Length = 190

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI  +P+L R +  ++  +  +  L+ +M E     +G GLAA QIG+  R+ V
Sbjct: 1   MSVHPIVIKGEPVLHRRATEVKDFDDALRTLVVDMHETNAVANGAGLAAPQIGIGLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++        V +NP     K+   + D     EGCLS+P     +KR+ ++ V   
Sbjct: 61  YAMENDDDVPAKGVLVNPTLVLGKVSGTAPDPDEESEGCLSVPGEHFPLKRAEWVRVSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           D         A G  A C+QHE DHL+G L++D L
Sbjct: 121 DEFGNPVQFEATGWFARCMQHEYDHLDGKLYVDRL 155


>gi|227496282|ref|ZP_03926578.1| peptide deformylase [Actinomyces urogenitalis DSM 15434]
 gi|226834207|gb|EEH66590.1| peptide deformylase [Actinomyces urogenitalis DSM 15434]
          Length = 163

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+LR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAYRDIRIIGDPVLRTQCEWITDIDDSVKQLVEDLLETVDEDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NP+I   + D++    EGCLS+P      KR+ +     +D + 
Sbjct: 61  WNIDGEIG-----YILNPRIDELNFDEYQDGDEGCLSVPGLWYPTKRAWYARATGIDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +  ++  + L+  C+QHE DHL G L++D L R  R    K +
Sbjct: 116 KEVVVEGEELMGRCIQHECDHLEGHLYLDRLDRKNRAKAMKDL 158


>gi|108797549|ref|YP_637746.1| peptide deformylase [Mycobacterium sp. MCS]
 gi|119866635|ref|YP_936587.1| peptide deformylase [Mycobacterium sp. KMS]
 gi|126433171|ref|YP_001068862.1| peptide deformylase [Mycobacterium sp. JLS]
 gi|122977465|sp|Q1BEJ4|DEF_MYCSS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158513055|sp|A1UAD9|DEF_MYCSK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158513446|sp|A3PTZ4|DEF_MYCSJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|108767968|gb|ABG06690.1| peptide deformylase [Mycobacterium sp. MCS]
 gi|119692724|gb|ABL89797.1| peptide deformylase [Mycobacterium sp. KMS]
 gi|126232971|gb|ABN96371.1| peptide deformylase [Mycobacterium sp. JLS]
          Length = 197

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 14/163 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+LR  + PI       + +++ +LI ++ E M + +G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLRTETTPIPVGDDGSLPAEVADLIRDLYETMDAANGVGLAANQIGVS 60

Query: 56  YRLVVIDLQDHAHRKNPM--VFINPKIITFSD------DFSVYQEGCLSIPDYRADVKRS 107
            R+ V D  D   R      V INP ++  SD      D    +EGCLS+P  +    R+
Sbjct: 61  QRVFVYDCPDSRGRAGRRRGVVINP-VLETSDIPETMPDPDDDEEGCLSVPGEQFPTGRA 119

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +  V  +D +     +   GL A  LQHE  HL+G L++D L
Sbjct: 120 DWARVTGLDADGSPITVEGTGLFARMLQHETGHLDGFLYLDRL 162


>gi|254498920|ref|ZP_05111625.1| peptide deformylase [Legionella drancourtii LLAP12]
 gi|254351905|gb|EET10735.1| peptide deformylase [Legionella drancourtii LLAP12]
          Length = 178

 Score = 84.3 bits (207), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 8/154 (5%)

Query: 6   LVIFPDPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V+  +P LR VS+PI  E+  + D+  L + +  +M   +G+GLAA QIG+  R +V  
Sbjct: 8   VVLLGNPTLRMVSKPIDDEEFGTLDLNQLSERLFHMMKIKNGLGLAAPQIGINKRAIVFG 67

Query: 63  LQDHAHRKN--PM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           + +H  +K+  P+   +  NP   + SD      EGCLS+ D R  V R   I  R  D 
Sbjct: 68  MDNHPVKKHLPPIPYTILFNPIFESTSDFIEEEYEGCLSVGDLRGKVPRHKNIIYRGYDV 127

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +       A  L A  +QHE DHLNGI+F+D ++
Sbjct: 128 DGNLIEREASDLHARVVQHETDHLNGIIFLDKVT 161


>gi|169837246|ref|ZP_02870434.1| peptide deformylase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 238

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIGVLYRLVVID 62
           P+  LR+ S+ I  I  ++  LI +M       +          LAAVQ+  L R+V++ 
Sbjct: 57  PNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVDKLERIVIVR 116

Query: 63  LQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            + D+    +    INP+II +  + +   EGCLS+      V R   + V+ ++ + + 
Sbjct: 117 SEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRVKALNEDGKE 176

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             I A+G LA  LQHE+DH NGI+FIDH+   K+D   K
Sbjct: 177 IRIKAEGFLARVLQHEIDHTNGIVFIDHIKN-KKDAFYK 214


>gi|54294000|ref|YP_126415.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens]
 gi|53753832|emb|CAH15298.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens]
 gi|307609830|emb|CBW99347.1| hypothetical protein LPW_11251 [Legionella pneumophila 130b]
          Length = 172

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 10/149 (6%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DPILR+ + PI   E  +S +  LI  M  +M     +G+AA QIG+  R++V    D+ 
Sbjct: 9   DPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFG-TDYT 67

Query: 68  HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R+ P         INP +   S +     EGCL+  +   +V R+  I     D +   
Sbjct: 68  KRRKPEYPIPDTALINPSLRILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNR 127

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
               A GL A  LQHE+DHL+G LF+D +
Sbjct: 128 ITKKASGLEARILQHEIDHLDGFLFLDRV 156


>gi|257095171|ref|YP_003168812.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257047695|gb|ACV36883.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 177

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 10/151 (6%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-- 60
           +P++   DP L R + P+E+  +  ++ LI +M E M   DG GLAA QIGV  RLV+  
Sbjct: 3   RPVLRMGDPRLARKAAPVEQFATPALHALIADMEETMRHLDGAGLAAPQIGVGLRLVIFG 62

Query: 61  IDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +D         P+   V INP +   S       EGCLS+P  R  V R  +  +RY   
Sbjct: 63  VDRNPRYPEAEPVPRTVLINPVLFPLSSATEEAWEGCLSVPGLRGWVPR--WSRLRYTGF 120

Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILF 146
           +A+ + I     G  A  +QHE DHL+GIL+
Sbjct: 121 DARGRPIDRSVAGFHARVVQHECDHLDGILY 151


>gi|157127011|ref|XP_001654759.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes
           aegypti]
 gi|108884464|gb|EAT48689.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes
           aegypti]
          Length = 243

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 20/166 (12%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           DP+LR+ +   P+E + S ++  L+ +M+ VM   D +GLAA QIG+  +++V++ +D  
Sbjct: 60  DPVLRQTAAMVPVEAVTSPEVKYLVKHMVHVMRKYDCVGLAAPQIGISLKILVMEFEDRL 119

Query: 67  -AHRKNP------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             H  N              V INP++   + +   + E C S+  Y  +V R A + + 
Sbjct: 120 KKHYTNAEYKIKEMETLPLTVMINPEMKITNYEKISFPESCASVKGYSGEVARYAGVLLS 179

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            +D N Q + +   G  A   QHE+DHLNG+++ D    +KRD  T
Sbjct: 180 GLDENGQSKEMELKGWNARIAQHEMDHLNGVVYTD---VMKRDSFT 222


>gi|154497980|ref|ZP_02036358.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC
           29799]
 gi|150272970|gb|EDN00127.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC
           29799]
          Length = 175

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 7/154 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR-LV 59
           M  + ++   DP+L + +  +   +  +  L+D+M+E +  + G+GLAA QIG+L R +V
Sbjct: 12  MALRTIITKGDPVLSKKAHLVTNFDEKLAILLDDMVETLRDSGGVGLAAPQIGILRRVVV 71

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VI+ +D       +  +NP+II  ++   V  EGCLS+P     V R     V+  +   
Sbjct: 72  VINDEDQV-----IELVNPEIIA-TEGEQVGFEGCLSVPGRWGKVARPMKARVKAQNRQG 125

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +   +  +GL A C  HELDHL+G LF +   +L
Sbjct: 126 EWFEVEDEGLTARCFCHELDHLDGHLFTELTDKL 159


>gi|83941565|ref|ZP_00954027.1| peptide deformylase [Sulfitobacter sp. EE-36]
 gi|83847385|gb|EAP85260.1| peptide deformylase [Sulfitobacter sp. EE-36]
          Length = 131

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 2/130 (1%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M++ M +  G+GLAA QIGV  ++ V+D      R   +   NP +I  S   + Y+E  
Sbjct: 1   MIDTMDAMPGVGLAAPQIGVSLQVAVVDASQA--RDKRIRLANPVVIDASAIMNEYEEAS 58

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++P   A ++R   + V+Y+D           GL AT +QH++DHL G +F+D+LS+ +
Sbjct: 59  PNLPGISAKIRRPRGVKVQYLDEQGARVTRDFVGLEATSVQHQIDHLAGKMFVDNLSKTR 118

Query: 155 RDMITKKMSK 164
           RDM+ +K  K
Sbjct: 119 RDMLLRKARK 128


>gi|113478377|ref|YP_724438.1| peptide deformylase [Trichodesmium erythraeum IMS101]
 gi|110169425|gb|ABG53965.1| peptide deformylase [Trichodesmium erythraeum IMS101]
          Length = 177

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 9/168 (5%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           + ILR  ++ +  I + ++  LIDN++  +  T+G+G+AA Q+ +   L +I  + +   
Sbjct: 11  NKILRYQAQTVNNILDQNVQQLIDNLIFTVIETNGVGIAAPQVSISDCLFIIASRPNIRY 70

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A +  P+  INP++I+ S+D     EGCLSIP  R  V R   I V Y +   + +  
Sbjct: 71  PNAPKMEPIAMINPRLISHSEDRVKGWEGCLSIPGIRGLVPRYRVINVEYTNREGKLERQ 130

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK--MSKLVQLRD 170
                +A   QHE DHL G++F+D +     D+IT+     +++QLR+
Sbjct: 131 ELTDFVARIFQHEYDHLEGLVFLDRVESTT-DLITEDEYQKQIIQLRN 177


>gi|290955665|ref|YP_003486847.1| polypeptide deformylase [Streptomyces scabiei 87.22]
 gi|260645191|emb|CBG68277.1| polypeptide deformylase [Streptomyces scabiei 87.22]
          Length = 218

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + +++  ++   +  +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 28  PIVAAGDPVLRRTAEPFDGQLDPALLARFVAALRATMHAAPGVGLAAPQVGVSLRIAVIE 87

Query: 63  LQDH-------AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                      A  + P  F   +NP           + EGCLS+P ++A V R A + +
Sbjct: 88  DPAPVPEEVRLARGRVPQPFRVLVNPAYEAVGPFRDAFFEGCLSVPGWQAVVARHARVRL 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           R +D   +       G  A  +QHE DHLNG L++DH
Sbjct: 148 RALDERGRAVDEEFSGWPARIVQHETDHLNGTLYLDH 184


>gi|111019610|ref|YP_702582.1| peptide deformylase [Rhodococcus jostii RHA1]
 gi|110819140|gb|ABG94424.1| peptide deformylase [Rhodococcus jostii RHA1]
          Length = 188

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 11/171 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I  D  L   +  +   +S++   +D++ E   +  G GLAA Q+G    + V
Sbjct: 1   MAIRPILIAGDTRLTTPAVTVTAFDSELAAFVDDLHETNTAAHGAGLAANQVGDPRAIFV 60

Query: 61  IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            DL D A R      NP++  +P+  T  D   +  EGCLS+P  R    R+ +  V  +
Sbjct: 61  YDLIDDARRHRGHVINPVLETSPRPETMPDPDDL--EGCLSVPGERYPTGRADWARVVGV 118

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMITKKM 162
           D + +   +   G LA CLQHE DHL G L++D L     R  R MI ++ 
Sbjct: 119 DVDNKPISVEGTGYLARCLQHETDHLAGHLYLDRLIGRNHRAARKMIKQRQ 169


>gi|169827062|ref|YP_001697220.1| peptide deformylase [Lysinibacillus sphaericus C3-41]
 gi|168991550|gb|ACA39090.1| Peptide deformylase 1 [Lysinibacillus sphaericus C3-41]
          Length = 176

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P  +L      + +IN +++ L+D++ + M   DG+G+AA QI +  R+ +
Sbjct: 13  MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      ++ +  INP +I  +D   +  EGCLS P    +V+R +++ +   D   +
Sbjct: 73  VEL---GEERDILEMINPTVIE-TDGAEIDIEGCLSFPGLYGEVERPSYVKIEACDREGR 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A G  A  + HE+DHL+G+LF   + R+
Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFDSKIQRV 161


>gi|86738737|ref|YP_479137.1| peptide deformylase [Frankia sp. CcI3]
 gi|86565599|gb|ABD09408.1| peptide deformylase [Frankia sp. CcI3]
          Length = 230

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           + +  +P+L R  + I +  + ++  LID+M   MY  +G+GLAA QI V   + V D  
Sbjct: 50  ITVVGEPVLHRPCKKITEFGTAELAALIDDMFTTMYGAEGVGLAANQIDVDAAVFVYDCT 109

Query: 65  DHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D    ++    +NP   +            EGCLS+P    +V R     VR  D +   
Sbjct: 110 DEDGVRHVGHLVNPVLEEAPPAERRLVKGDEGCLSVPGAYMEVARLEHAAVRGQDQHGAP 169

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             +   G  A CLQHE DHL G L++D LS   R    ++M +  +
Sbjct: 170 LRLEGTGYFARCLQHETDHLYGSLYLDRLSSRGRKKALREMEERTE 215


>gi|323692973|ref|ZP_08107194.1| peptide deformylase [Clostridium symbiosum WAL-14673]
 gi|323502974|gb|EGB18815.1| peptide deformylase [Clostridium symbiosum WAL-14673]
          Length = 150

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 7/139 (5%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D ILR+  + +++++  I  ++D+ML+ + ++ +G  LA  Q+G+L RLVVI+     + 
Sbjct: 11  DEILRKRCKEVKEVDDKIRVMLDDMLDTLRHTENGAALATNQVGILKRLVVIE-----YC 65

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +  +NPKII  S       EGCLS P    +  R   +TV+ +D   Q  I+  +G 
Sbjct: 66  GELLKLVNPKIIGRSGTQECI-EGCLSFPGKFVNTIRPQKVTVQALDEYGQEVILTGEGE 124

Query: 130 LATCLQHELDHLNGILFID 148
           +A C  HEL+HL+G +F+D
Sbjct: 125 MAKCYCHELEHLDGEIFLD 143


>gi|153001985|ref|YP_001367666.1| peptide deformylase [Shewanella baltica OS185]
 gi|151366603|gb|ABS09603.1| peptide deformylase [Shewanella baltica OS185]
          Length = 185

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHCPLALFIMASR 74

Query: 65  DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +     A    P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY +   
Sbjct: 75  PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           + Q     G +A   QHE DHL GI  ++
Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLE 163


>gi|116049053|ref|YP_792145.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390510|ref|ZP_06879985.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
 gi|313106089|ref|ZP_07792346.1| putative peptide deformylase [Pseudomonas aeruginosa 39016]
 gi|115584274|gb|ABJ10289.1| probable peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878848|gb|EFQ37442.1| putative peptide deformylase [Pseudomonas aeruginosa 39016]
          Length = 179

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 11  DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           D  L R+++P+  E + S+ +  LID+M E M+   G+GLAA QIGV  +LV+   +   
Sbjct: 10  DERLLRIAQPVPSELLGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE 69

Query: 68  HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              +     P + +NP+I    D+     EGCLS+P  R  V R     +RY   + Q Q
Sbjct: 70  RYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHR--RIRYQGLDPQGQ 127

Query: 123 II--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            I    +G  A  +QHE DHL G L+   ++   +   T+
Sbjct: 128 PIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTE 167


>gi|304410515|ref|ZP_07392133.1| peptide deformylase [Shewanella baltica OS183]
 gi|307304608|ref|ZP_07584358.1| peptide deformylase [Shewanella baltica BA175]
 gi|304350999|gb|EFM15399.1| peptide deformylase [Shewanella baltica OS183]
 gi|306912010|gb|EFN42434.1| peptide deformylase [Shewanella baltica BA175]
          Length = 185

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +     A    P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY +   
Sbjct: 75  PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           + Q     G +A   QHE DHL GI  ++
Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLE 163


>gi|218892912|ref|YP_002441781.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
 gi|254234257|ref|ZP_04927580.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719]
 gi|126166188|gb|EAZ51699.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719]
 gi|218773140|emb|CAW28952.1| probable peptide deformylase [Pseudomonas aeruginosa LESB58]
          Length = 179

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           D  L R+++P+      + ++  LID+M E M+   G+GLAA QIGV  +LV+   +   
Sbjct: 10  DERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE 69

Query: 68  HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              +     P + +NP+I    D+     EGCLS+P  R  V R     +RY   + Q Q
Sbjct: 70  RYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHR--RIRYQGLDPQGQ 127

Query: 123 II--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            I    +G  A  +QHE DHL G L+   ++   +   T+
Sbjct: 128 PIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTE 167


>gi|313157220|gb|EFR56650.1| peptide deformylase [Alistipes sp. HGB5]
          Length = 229

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 9/147 (6%)

Query: 13  ILRRVSRPI--EKINSDIMNLIDN--MLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHA 67
            LRR + P+  E++ S+   L+    +L V    D G+G+AA Q+GV  RL+ +   D  
Sbjct: 83  FLRRKAAPLGAEELRSEYFRLLKQGMLLTVRDPADEGVGIAAPQVGVSRRLIAVQRFDKP 142

Query: 68  HRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII-Y 125
               P   ++NP+I+  S   +  +EGCLS+P+    V R+  I +RY+D      +   
Sbjct: 143 G--EPFECYVNPEIVGRSAARTAGREGCLSVPETSGTVLRADRIVLRYLDETTMRPVTDT 200

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
            +G  A   QHE+DHL+G+LFID + R
Sbjct: 201 VEGFTAVIFQHEIDHLDGVLFIDRMQR 227


>gi|168007592|ref|XP_001756492.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692531|gb|EDQ78888.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 191

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 20/173 (11%)

Query: 11  DPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+L + +  +++ N   S I   I++M++VM +  G+GLAA QIGV  +++V++     
Sbjct: 5   DPVLHKPAEEVKRENIGSSLIEKTINDMVDVMRAGPGVGLAAPQIGVPLQIIVLEDTKEL 64

Query: 63  ------LQDHAHRKNP---MVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITV 112
                  +  A +++P   +V INPKI       + Y  EGCLS+  YRA V+R + + V
Sbjct: 65  MSYTSPEECEAQQRSPFDLLVIINPKIEKKEGRGTAYFFEGCLSVEGYRALVERHSEVEV 124

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             +  + +   + A G  A  LQHE DHL G L++D +  +KR   T +  +L
Sbjct: 125 TGLGRDGRPLHLTAKGWKARILQHEYDHLQGTLYVDKM--VKRTFRTTENLRL 175


>gi|126173131|ref|YP_001049280.1| peptide deformylase [Shewanella baltica OS155]
 gi|125996336|gb|ABN60411.1| peptide deformylase [Shewanella baltica OS155]
          Length = 185

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILGQTAITVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +     A    P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY +   
Sbjct: 75  PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           + Q     G +A   QHE DHL GI  ++
Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLE 163


>gi|312796239|ref|YP_004029161.1| peptide deformylase [Burkholderia rhizoxinica HKI 454]
 gi|312168014|emb|CBW75017.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI
           454]
          Length = 177

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R+++P+++ N+ ++  LI +M E M + +G GLAA QIGV  ++V+     +A  
Sbjct: 10  DPRLLRMAKPVDRFNTPELHQLIQDMFETMRAANGAGLAAPQIGVDLQVVIFGFGQNARY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP I   S D     EGCLS+P  R  V R + I     D   Q    
Sbjct: 70  PDAPAVPETVLINPMITPVSLDMEEGWEGCLSVPGLRGIVSRLSMIRYEGHDQYGQPIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 IAEGFHARVVQHECDHLIGRLY 151


>gi|307069643|ref|YP_003878120.1| peptide deformylase [Candidatus Zinderia insecticola CARI]
 gi|306482903|gb|ADM89774.1| peptide deformylase [Candidatus Zinderia insecticola CARI]
          Length = 144

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 89/140 (63%), Gaps = 2/140 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P+  L ++S+ I KIN+ I NLI  M E+MY+  GIGL+A+QI    ++ +ID+  + +
Sbjct: 7   YPNKNLFKISKKIYKINNKIKNLIFYMSEIMYNLLGIGLSAIQINKKKKIFIIDISKNKN 66

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +    +FIN KI+  S     ++EGCLS P    ++KRS +I + +++   + +I  +  
Sbjct: 67  K--LKIFINSKILYLSKKKIYFKEGCLSFPGIYKNIKRSIYIKIIFINIKGKFKIYKSKN 124

Query: 129 LLATCLQHELDHLNGILFID 148
           + + C+QHE++H+NG +F++
Sbjct: 125 IFSICIQHEIEHINGKIFLN 144


>gi|229086420|ref|ZP_04218596.1| Peptide deformylase [Bacillus cereus Rock3-44]
 gi|228696936|gb|EEL49745.1| Peptide deformylase [Bacillus cereus Rock3-44]
          Length = 124

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 4/128 (3%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M E M   DG+GLAA Q+GV  ++ V+D+ D   +   +  INP I+    +  V  EGC
Sbjct: 1   MHETMLVADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGE-QVGPEGC 56

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           LS P    +V+R+ +I VR  +   +  ++ AD  LA  +QHE+DHL+G+LF   ++R  
Sbjct: 57  LSFPGLYGEVERAEYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLHGVLFTSKVTRYY 116

Query: 155 RDMITKKM 162
            +   ++M
Sbjct: 117 EENELEEM 124


>gi|218188450|gb|EEC70877.1| hypothetical protein OsI_02402 [Oryza sativa Indica Group]
 gi|222618667|gb|EEE54799.1| hypothetical protein OsJ_02204 [Oryza sativa Japonica Group]
          Length = 155

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 14/130 (10%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQDH----------AHRKNP---MVFINPKI 80
           M+ VM    G+GLAA QIGV  +++V+ D Q++          A  + P   +V INPK+
Sbjct: 1   MVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKL 60

Query: 81  ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
            T S   +++ EGCLS+  YRA V+R   + V  +D N +   + A G  A  LQHE DH
Sbjct: 61  KTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDH 120

Query: 141 LNGILFIDHL 150
           L G L++D +
Sbjct: 121 LEGTLYVDTM 130


>gi|194902253|ref|XP_001980656.1| GG17275 [Drosophila erecta]
 gi|190652359|gb|EDV49614.1| GG17275 [Drosophila erecta]
          Length = 196

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP+LR+ +   P E I+S +I  +ID M++V+   D +G+AA Q+G+  R++V++ ++  
Sbjct: 14  DPVLRQRAEEVPPEDIDSMEINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 73

Query: 66  --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   +  RK    P+ VFINP++   S   + + EGC+S+  Y A V+R   + +R
Sbjct: 74  QEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKVRIR 133

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +  +G  A   QHE+DHLNGI+++D +
Sbjct: 134 GIGKLGTPSEMELEGWSARIAQHEVDHLNGIIYVDKM 170


>gi|317506338|ref|ZP_07964150.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974]
 gi|316255348|gb|EFV14606.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974]
          Length = 198

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 16/166 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           P+ I  DP+L R +  +   +      D++ L+++M E + ++ G+GLAA Q+GV  RL 
Sbjct: 5   PIRIAGDPVLHRPTELVRLTDEGAAPPDVIVLLEDMYETLKASHGVGLAATQVGVGLRLF 64

Query: 60  VIDLQDHAHRKN---PMVFINPKIITFSD------DFSVYQEGCLSIPDYRADVKRSAFI 110
           V D  D    K        INP ++  SD      D    +EGCLS P  R    R+A+ 
Sbjct: 65  VYDCPDDTSGKRVSRKGEVINP-VLETSDIPEGMPDEDEDEEGCLSAPGLRYPTGRAAWA 123

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
            V  +D   Q   I   GL A  LQHE+ HL+G L++D L  R  R
Sbjct: 124 KVTGVDRAGQPVEIEGTGLFARMLQHEVGHLDGKLYLDVLVGRWAR 169


>gi|293603522|ref|ZP_06685943.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
 gi|292817958|gb|EFF77018.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
          Length = 177

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 10/164 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++   DP L RV+ P+E+ ++ ++  LI +M E M +  G+GLAA QIGV  +LV+   
Sbjct: 4   PILKMGDPRLLRVAPPVEQFDTPELHALIADMFETMAAAQGVGLAAPQIGVDLQLVIFGF 63

Query: 64  -QDHAHRKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            ++  +   P V      NP I   SD+     EGCLS+P  R  V R  +  +RY   +
Sbjct: 64  DRNERYPDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGQVPR--YRHIRYSGFD 121

Query: 119 AQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              ++I   A+G  A  +QHE DHL G L+   +    +   T+
Sbjct: 122 PYGKLIEREAEGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165


>gi|300778831|ref|ZP_07088689.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
 gi|300504341|gb|EFK35481.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
          Length = 211

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 4/149 (2%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           L  +S   + ++ +I  L+  M E + STDG +G+AA Q+G+  +++ +  Q       P
Sbjct: 51  LLNISSEADPLDPNIAVLVKRMRESLLSTDGGVGIAAPQVGINRKIIWV--QRFDKEGAP 108

Query: 73  M-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           +  FINP I+  SD  ++  EG LSIPD+R    RS  I + Y+D   Q      +G  A
Sbjct: 109 LEYFINPVIVWRSDLQNLGPEGDLSIPDFRDQFYRSKVIQLEYVDLKGQKYSEIVEGFTA 168

Query: 132 TCLQHELDHLNGILFIDHLSRLKRDMITK 160
              QHE+DHL GIL  D   + K D   K
Sbjct: 169 VIFQHEIDHLFGILISDKKEKEKNDSYKK 197


>gi|114327146|ref|YP_744303.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
 gi|114315320|gb|ABI61380.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
          Length = 209

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%)

Query: 12  PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--IDLQDHAH 68
           P+L R + P+ +    +I  L  +M+E M    G+GLAA Q+    R+ V  + +     
Sbjct: 40  PVLLRRADPVPDPTAPEIQRLALDMIETMIDAPGVGLAAPQVYQSLRMFVFRVPVSRGGE 99

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII--YA 126
             +P V INP++    D+  +  EGCLSIP +R +V R+  + VRY        +I   A
Sbjct: 100 EVSPTVLINPELEWVGDEIQMCWEGCLSIPGFRGEVPRA--MRVRYRGIGLDGAVIEREA 157

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKR 155
            G  A  +QHE DHL+GIL+   ++ L R
Sbjct: 158 SGFHANVIQHEYDHLDGILYPMRMNDLGR 186


>gi|258593594|emb|CBE69935.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [NC10
           bacterium 'Dutch sediment']
          Length = 176

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 8/151 (5%)

Query: 12  PILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           P+LR+V+ P+  E I  ++I  LID+M+E M   +G+G+AA Q+ V  ++ VI+ + +  
Sbjct: 12  PVLRQVAPPVRPETIREAEIQRLIDDMIETMREYEGVGIAAPQVHVSKQIAVIESKGNTR 71

Query: 69  RKN----PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             +    P+ V IN ++   + +     EGCLS+ D+R    R   +  + +D   +   
Sbjct: 72  YPDAPEIPLTVLINLEVTPLAPELEDDWEGCLSLIDFRGQTPRYQQVRAKALDREGRSFE 131

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             A G  A  LQHE DHL G LFID +  L+
Sbjct: 132 FVATGFHARVLQHERDHLLGKLFIDRMKSLE 162


>gi|256587795|gb|ACU98927.1| polypeptide deformylase [Propionibacterium jensenii]
          Length = 200

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + +P+L   ++P+   + D+  LI +M     + DG+GLAA Q+G+   L + +  D   
Sbjct: 27  WSEPVLHASTQPVTDFDDDLHELIRDMFVTNAAADGVGLAATQVGLSLSLFIYNCPDDDG 86

Query: 69  RKNPMVFINPKII--TFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             +     NP++   T  D +     EGCLS P     + R    T    D       + 
Sbjct: 87  VVHKGAICNPQVTLPTGRDRNLVSVDEGCLSWPGGFQPLARPDLATCTGQDPWGTPLSVT 146

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             G  A CLQHE DH NGI+F D LS+  R  + ++   L  L
Sbjct: 147 GTGYFARCLQHETDHCNGIVFGDRLSKRSRRKLDEQHENLDHL 189


>gi|266624674|ref|ZP_06117609.1| peptide deformylase [Clostridium hathewayi DSM 13479]
 gi|288863453|gb|EFC95751.1| peptide deformylase [Clostridium hathewayi DSM 13479]
          Length = 121

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 5/107 (4%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           G+GLAA Q+GVL ++VVID++D     N  V INP +IT +       EGCLS+P     
Sbjct: 1   GVGLAAPQVGVLKQIVVIDVED----GNQYVLINP-VITETSGSQTGSEGCLSVPGKSGV 55

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           V R   + V+  DC      +  +GLLA  + HE DHL+G LF+D +
Sbjct: 56  VTRPDHVKVKAFDCEMNEFELIGEGLLARAICHECDHLSGDLFVDKV 102


>gi|107100575|ref|ZP_01364493.1| hypothetical protein PaerPA_01001600 [Pseudomonas aeruginosa PACS2]
 gi|254239493|ref|ZP_04932815.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192]
 gi|126192871|gb|EAZ56934.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192]
          Length = 179

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           D  L R+++P+      + ++  LID+M E M+   G+GLAA QIGV  +LV+   +   
Sbjct: 10  DERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE 69

Query: 68  HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              +     P + +NP+I    D+     EGCLS+P  R  V R     +RY   + Q Q
Sbjct: 70  RYPDAPAVPPTILLNPRITLLDDEMEEGWEGCLSVPGLRGAVSRHR--RIRYQGLDPQGQ 127

Query: 123 II--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            I    +G  A  +QHE DHL G L+   ++   +   T+
Sbjct: 128 PIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTE 167


>gi|183601693|ref|ZP_02963063.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683774|ref|YP_002470157.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190808|ref|YP_002968202.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196214|ref|YP_002969769.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219299|gb|EDT89940.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621424|gb|ACL29581.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249200|gb|ACS46140.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250768|gb|ACS47707.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793797|gb|ADG33332.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 160

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR    PI +I   + NL+ ++L+ +      G++A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP ++  +       EGCLS+P      KR+ +  VR MD +  
Sbjct: 61  YNIDGKIG-----YVLNP-VLEETRGEQYGDEGCLSLPKLWYKTKRADYARVRGMDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++  DG++   LQHE DHL+G L+ID L +
Sbjct: 115 EIVLEGDGIMGRMLQHETDHLDGHLYIDRLEK 146


>gi|329114617|ref|ZP_08243376.1| Peptide deformylase 1 [Acetobacter pomorum DM001]
 gi|326696097|gb|EGE47779.1| Peptide deformylase 1 [Acetobacter pomorum DM001]
          Length = 174

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 12  PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--IDLQDHAH 68
           P+LR+ ++ + +    DI  LI +M E +  + G+GLAA Q+ V  RL +  + L     
Sbjct: 12  PVLRQSAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLFIYSVPLARSEG 71

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +P       INP +    D+  +  EGCLS+PD R +V R   I     D + Q    
Sbjct: 72  EDDPPLPVQALINPILTPVDDETQLRAEGCLSLPDLRGEVPRYKRIWYAGFDQHGQKVEG 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A G  A  +QHE+DHL+GIL+   ++ + +    K++++
Sbjct: 132 MATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKEITR 171


>gi|126649799|ref|ZP_01722035.1| peptide deformylase [Bacillus sp. B14905]
 gi|126593518|gb|EAZ87463.1| peptide deformylase [Bacillus sp. B14905]
          Length = 185

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 9/115 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI---- 97
           GIGLAA Q+  L R+  + LQD A  +   V INPKI++ S  + +    EGCLS+    
Sbjct: 58  GIGLAANQVNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNV 117

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           P Y   V R A ITV++   + + + +   GL A   QHELDHLNGI+F D ++ 
Sbjct: 118 PGY---VPRHARITVKFKTIDGEEKKMRLKGLSAIAFQHELDHLNGIMFYDRINE 169


>gi|52841298|ref|YP_095097.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148360273|ref|YP_001251480.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|296106683|ref|YP_003618383.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|52628409|gb|AAU27150.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148282046|gb|ABQ56134.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|295648584|gb|ADG24431.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
          Length = 172

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 10/149 (6%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +PILR+ + PI   E  +S +  LI  M  +M     +G+AA QIG+  R++V    D+ 
Sbjct: 9   NPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFGT-DYT 67

Query: 68  HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R+ P         INP +   S +     EGCL+  +   +V R+  I     D +   
Sbjct: 68  KRRKPEYPIPDTALINPSLKILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNR 127

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
               A GL A  LQHE+DHL+G LF+D +
Sbjct: 128 ITKKASGLEARILQHEIDHLDGFLFLDRV 156


>gi|330468108|ref|YP_004405851.1| peptide deformylase [Verrucosispora maris AB-18-032]
 gi|328811079|gb|AEB45251.1| peptide deformylase [Verrucosispora maris AB-18-032]
          Length = 165

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 7/144 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDH 66
           I  DP+LR  S PI   ++++ +L+ ++++ +    G  G+AA QIGV  ++ V D    
Sbjct: 6   IIGDPVLRTPSEPITSFDAELRSLVTDLMDTLLGKPGRAGVAAPQIGVNAQVFVYDAD-- 63

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            HR +    INP  +  SD+     EGCLSIP       R+   T    D + +   I  
Sbjct: 64  GHRGH---MINP-TLDLSDELQDDDEGCLSIPGLYFPTPRALHATAHGFDQHGEPLTIAG 119

Query: 127 DGLLATCLQHELDHLNGILFIDHL 150
            G LA  LQHE DHL+G L++D L
Sbjct: 120 SGFLARALQHETDHLHGRLYVDTL 143


>gi|78066802|ref|YP_369571.1| peptide deformylase [Burkholderia sp. 383]
 gi|77967547|gb|ABB08927.1| Peptide deformylase [Burkholderia sp. 383]
          Length = 177

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L  V++P+E+ ++ ++  ++ +M E M+  +G GLAA QIG+  +L++    ++   
Sbjct: 10  DPRLLEVAKPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLIIFGFGNNNRY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INPK+     D     EGCLS+P  R  V R A +     D   +    
Sbjct: 70  PDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQYGEKIDR 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            ADG  A  +QHE DHL G L+   ++   R   T+
Sbjct: 130 VADGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165


>gi|54297041|ref|YP_123410.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris]
 gi|53750826|emb|CAH12234.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris]
          Length = 172

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 10/149 (6%)

Query: 11  DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DPILR+ + PI   E  +S +  LI  M  +M     +G+AA QIG+  R++V   + + 
Sbjct: 9   DPILRQTAEPIAESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFSTE-YT 67

Query: 68  HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R+ P         INP +   S +     EGCL+  +   +V R+  I     D +   
Sbjct: 68  KRRKPEYPIPDTALINPSLKILSKEIQNGYEGCLNCGEIMGEVPRAMEIEYSGFDIDGNK 127

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
               A GL A  LQHE+DHL+G LF+D +
Sbjct: 128 ITKTASGLEARILQHEIDHLDGFLFLDRV 156


>gi|323448077|gb|EGB03980.1| hypothetical protein AURANDRAFT_33186 [Aureococcus anophagefferens]
          Length = 225

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLID---NMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V +P P LR  +R  +    D+         M ++MY+  G+GLAA Q+GV  RL+V +
Sbjct: 54  IVAYPHPALR--ARNGDLAPGDLAAAAPLAARMFDLMYAAGGVGLAAPQVGVNARLMVFN 111

Query: 63  LQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              D A   + +   NP+I+  S +  V  EGCLS P     V R A++ V  +D   + 
Sbjct: 112 PSGDAARTGDEVALANPRIVAASAELEVGDEGCLSFPGMGGPVARHAWVEVAGLDLEGRA 171

Query: 122 QIIYADGLLATCLQHELDHLNGILFI 147
                 G  A   QHE DHL+G++++
Sbjct: 172 ISRAYAGWDARVFQHEYDHLDGVVYV 197


>gi|317402414|gb|EFV82986.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
          Length = 177

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68
           DP L RV+ P+E+ ++ ++  LI++M E M +  G+GLAA QIGV  +LV+    ++  +
Sbjct: 10  DPRLLRVAPPVERFDTPELHALIEDMFETMAAAQGVGLAAPQIGVDLQLVIFGFDRNERY 69

Query: 69  RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              P V      NP I   SDD     EGCLS+P  R  V R   I  +  D   +    
Sbjct: 70  PDAPAVPQTILCNPVITPLSDDMEDGWEGCLSVPGLRGLVPRYRHIRYQGKDPYGRDIDR 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+G  A  +QHE DHL G L+   +    +   T+
Sbjct: 130 EAEGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165


>gi|33591309|ref|NP_878953.1| peptide deformylase [Bordetella pertussis Tohama I]
 gi|33598175|ref|NP_885818.1| peptide deformylase [Bordetella parapertussis 12822]
 gi|39931029|sp|Q7W0Q0|DEF1_BORPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|39931034|sp|Q7W4K0|DEF2_BORPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|33566733|emb|CAE38944.1| peptide deformylase [Bordetella parapertussis]
 gi|33570951|emb|CAE40418.1| peptide deformylase [Bordetella pertussis Tohama I]
 gi|332380711|gb|AEE65558.1| peptide deformylase [Bordetella pertussis CS]
          Length = 176

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 73/142 (51%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68
           DP L RV+ P+E+ ++ ++  LID+M E M    G+GLAA QIGV  +LV+   + +  +
Sbjct: 10  DPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGFERNDRY 69

Query: 69  RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              P V      NP I   SD+     EGCLS+P  R  V R   I     D   Q    
Sbjct: 70  PDAPAVPRTILCNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPAGQRIER 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 EAEGFHARVVQHECDHLIGRLY 151


>gi|299534600|ref|ZP_07047932.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1]
 gi|298729973|gb|EFI70516.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1]
          Length = 185

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 22/160 (13%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRL 58
           P LR  +  ++  +  +   L ++ML+ + ++             GIGLAA Q+  L R+
Sbjct: 13  PTLRTKAEEVKFPLTEETKKLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQVNSLQRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS----IPDYRADVKRSAFITV 112
             + L+D A  +   V INPKI++ S  + +    EGCLS    IP Y   V R A ITV
Sbjct: 73  FALHLKDEAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNIPGY---VPRHARITV 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           ++   + + + +   GL A   QHELDHLNGI+F D ++ 
Sbjct: 130 KFKTIDGEEKKMRLKGLPAIAFQHELDHLNGIMFYDRINE 169


>gi|271967210|ref|YP_003341406.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270510385|gb|ACZ88663.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 159

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAV-QIGVLYRLV 59
           M  +P+  F DP+LR V+ P+   + ++  L+ ++   M +  G    A  Q+GV  R++
Sbjct: 1   MAVQPIRPFADPVLRTVAEPVTSFDRELRGLVKSLQATMRAGAGRAGLAAPQLGVSLRVL 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V +L   A        INP++   S+   V  E CLS P     ++RS  +T R  D   
Sbjct: 61  VYELDGRAGH-----LINPRLEP-SERKIVADEACLSAPGLWWPLERSYMVTARGRDMFG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   + A G+LA  LQHE DHL+G+LFID L   +R+   +  S 
Sbjct: 115 KPVTVRALGMLARVLQHEADHLDGVLFIDRLPEDERERFLQTASS 159


>gi|183980768|ref|YP_001849059.1| polypeptide deformylase Def [Mycobacterium marinum M]
 gi|238690954|sp|B2HQN4|DEF_MYCMM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|183174094|gb|ACC39204.1| polypeptide deformylase Def [Mycobacterium marinum M]
          Length = 197

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 76/164 (46%), Gaps = 16/164 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+       + +D+  LI  M E M +  G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60

Query: 56  YRLVVIDLQD----HAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKR 106
            RL V D  D     AHR+   V INP + T        D     EGCLS+P       R
Sbjct: 61  LRLFVYDCADDRGKAAHRRG--VVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGR 118

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           + +  V  +D       +   GL A  LQHE  HL+G L++D L
Sbjct: 119 ATWARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCL 162


>gi|118617060|ref|YP_905392.1| peptide deformylase [Mycobacterium ulcerans Agy99]
 gi|158512383|sp|A0PNK2|DEF_MYCUA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|118569170|gb|ABL03921.1| polypeptide deformylase Def [Mycobacterium ulcerans Agy99]
          Length = 197

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 76/164 (46%), Gaps = 16/164 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+       + +D+  LI  M E M +  G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60

Query: 56  YRLVVIDLQD----HAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKR 106
            RL V D  D     AHR+   V INP + T        D     EGCLS+P       R
Sbjct: 61  LRLFVYDCADDRRKAAHRRG--VVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGR 118

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           + +  V  +D       +   GL A  LQHE  HL+G L++D L
Sbjct: 119 ATWARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCL 162


>gi|298491072|ref|YP_003721249.1| peptide deformylase ['Nostoc azollae' 0708]
 gi|298232990|gb|ADI64126.1| peptide deformylase ['Nostoc azollae' 0708]
          Length = 181

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++   +P+L + +  ++ I  + I  LI +++  +Y  + +G+AA Q+   +RL ++  
Sbjct: 10  PIIQLGNPMLVQKAAWVDNIQDEHIQKLIGDLIFTVYQANSVGIAAPQVAESHRLFIVAS 69

Query: 64  QDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +     A    P   INPKII +S +     EGCLS+P  R  V R   I + Y D N
Sbjct: 70  RPNTRYPDAPEMKPTAMINPKIIAYSTEVIKGWEGCLSVPGIRGLVPRYQKIEIEYNDRN 129

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            + Q       +A   QHE DHL G +F+D +   +  M   +  + V
Sbjct: 130 GKIQKQELTDFIARIFQHEYDHLEGKVFLDRVESTEELMTESEYQQRV 177


>gi|295395559|ref|ZP_06805753.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971578|gb|EFG47459.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 237

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 16/158 (10%)

Query: 5   PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  +   +    +S ++ L+  M   M +  G+GLAA Q+G+  RL V +
Sbjct: 43  PIVTAGDPVLRTTTARFDGQIDDSTLLELLTAMRTTMLAAPGVGLAAPQVGISLRLAVCE 102

Query: 63  -----LQDHA--HRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +HA    + P+ F   INP     +D    + EGCLSIP Y+A V R   +T+
Sbjct: 103 DPGTTSAEHAAARERTPLPFTALINPTYQPATDQLVAFYEGCLSIPGYQAVVARPRTVTL 162

Query: 113 RYMDCNAQHQIIYAD--GLLATCLQHELDHLNGILFID 148
              D   Q   I  D  G     + HE DHL+GIL++D
Sbjct: 163 TAHD--HQGATITKDITGWAGRIIAHETDHLDGILYLD 198


>gi|187251316|ref|YP_001875798.1| N-formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191]
 gi|238058210|sp|B2KD65|DEF_ELUMP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|186971476|gb|ACC98461.1| N-Formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191]
          Length = 176

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 8/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + +V + + ILR+  +P++   +   +  ++ +M +   S  G GL+A QIG+ +R+
Sbjct: 1   MAVRRIVKYGEDILRQKLKPVDFKTLEPQLDAILQDMHDTCMSFQGAGLSANQIGLTHRI 60

Query: 59  VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            +I +     +  A +    V INP I++        +EGCLS+P    +++R+  I V 
Sbjct: 61  AMIFIPEKTPKGEAQKFKRYVVINPVIVS-KKGCVTDEEGCLSLPGLWVEIERAESIVVH 119

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            ++       I+A G LA  LQHE+DHL+G +FIDH     +  I K++ KL
Sbjct: 120 CLNEKGLPVEIHAKGFLAKALQHEIDHLDGKIFIDHADPKLKPEIKKELKKL 171


>gi|270284179|ref|ZP_05965690.2| peptide deformylase [Bifidobacterium gallicum DSM 20093]
 gi|270277263|gb|EFA23117.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
          Length = 169

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 6/164 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ + PDP+LR    PI++I   I +L+ ++L+ +      GL+A QIGV  R    ++
Sbjct: 12  RPIRVVPDPVLRTQCDPIKEITPAIRHLVQDLLDTVDDPGRAGLSANQIGVPLRAFSYNI 71

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                       +NP ++  +       EGCLS+P      +R+ +   R +D +    +
Sbjct: 72  DGKIG-----YILNP-VLEETRGEQYGDEGCLSVPGLWYKTRRADYARCRGIDLDGNEVV 125

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +  DG++   +QHE DHL+G +++D L + +R    K M +  Q
Sbjct: 126 LEGDGIMGRMIQHETDHLDGHVYLDRLEKEERRAALKYMREHQQ 169


>gi|307328424|ref|ZP_07607600.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306885997|gb|EFN17007.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 227

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 12/156 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           P+V    P+LR+ + P E ++ +D ++ L+  M E M+S  G+GLAA QIGV  RL VI 
Sbjct: 21  PIVSAGVPVLRQPALPYEGQLAADQLDRLLAAMRETMHSAPGVGLAAPQIGVPLRLAVIE 80

Query: 62  -------DLQDHAHR-KNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  ++Q+   R   P  V +NP         + + EGCLSIP ++A V R   I +
Sbjct: 81  DPAEVAAEVQEVRGRVPQPYRVLVNPGYEPVGHGRAAFFEGCLSIPGWQAVVSRPDRIRL 140

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           R  D   +       G  A  +QHE DHL+G+L++D
Sbjct: 141 RGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176


>gi|289706123|ref|ZP_06502494.1| peptide deformylase [Micrococcus luteus SK58]
 gi|289557156|gb|EFD50476.1| peptide deformylase [Micrococcus luteus SK58]
          Length = 210

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 13/172 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ ++ +P+L R +  +E I+ +I  LI++M     +  G+GLAA Q+GV  R+     
Sbjct: 5   RPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAAPQVGVGLRIFTWTF 64

Query: 64  QDHAHRKNPMVFINPKIITFSDDFS-------VYQEGCLSIPDYRADVKRSAFITVRYMD 116
            D     N    INP ++T  D           + EGCLS+P     ++R   + +    
Sbjct: 65  PDSGDAPNVGHVINP-VLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLSGQR 123

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-----RLKRDMITKKMS 163
            + +     A+G  A  +QHE DHLNG L+++ L      R KR    ++++
Sbjct: 124 VDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEGKWQRRWKRAQRAERLN 175


>gi|193699878|ref|XP_001950597.1| PREDICTED: peptide deformylase, mitochondrial-like [Acyrthosiphon
           pisum]
          Length = 213

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 18/157 (11%)

Query: 11  DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+LR  + P+  EKI + ++ NLI  M  +M  ++ IGLAA Q+G+ +++ VI      
Sbjct: 32  DPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIHFPRPS 91

Query: 63  ---------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                    L+   H +N  V+INP++   + +   + E C S   Y ADV R   + + 
Sbjct: 92  HYFSKEEILLKGMEHVEN-QVWINPELKVLNHEKVTFNESCASFKGYSADVPRYKRVLLT 150

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D N + + + A    A  +QHE+DHLNG+++ D +
Sbjct: 151 GIDENGEKKTLDAKEWTARIVQHEMDHLNGVMYSDRM 187


>gi|239917470|ref|YP_002957028.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|281414039|ref|ZP_06245781.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|239838677|gb|ACS30474.1| peptide deformylase [Micrococcus luteus NCTC 2665]
          Length = 213

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 13/172 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+ ++ +P+L R +  +E I+ +I  LI++M     +  G+GLAA Q+GV  R+     
Sbjct: 5   RPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAASQVGVGLRIFTWTF 64

Query: 64  QDHAHRKNPMVFINPKIITFSDDFS-------VYQEGCLSIPDYRADVKRSAFITVRYMD 116
            D     N    INP ++T  D           + EGCLS+P     ++R   + +    
Sbjct: 65  PDSGDAPNVGHVINP-VLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLSGQR 123

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-----RLKRDMITKKMS 163
            + +     A+G  A  +QHE DHLNG L+++ L      R KR    ++++
Sbjct: 124 VDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEGKWQRRWKRAQRAERLN 175


>gi|229098336|ref|ZP_04229283.1| Peptide deformylase [Bacillus cereus Rock3-29]
 gi|229104429|ref|ZP_04235098.1| Peptide deformylase [Bacillus cereus Rock3-28]
 gi|229117353|ref|ZP_04246731.1| Peptide deformylase [Bacillus cereus Rock1-3]
 gi|228666253|gb|EEL21717.1| Peptide deformylase [Bacillus cereus Rock1-3]
 gi|228679127|gb|EEL33335.1| Peptide deformylase [Bacillus cereus Rock3-28]
 gi|228685234|gb|EEL39165.1| Peptide deformylase [Bacillus cereus Rock3-29]
          Length = 156

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLMADGVGLAAPQVGVSLQVAVVDVDD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|293343343|ref|XP_002725458.1| PREDICTED: peptide deformylase-like protein-like [Rattus
           norvegicus]
 gi|293355230|ref|XP_001073696.2| PREDICTED: peptide deformylase-like protein [Rattus norvegicus]
          Length = 231

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR V+ P+E       ++  L++ +++VM     +GL+A Q+GV  +++V++  D  
Sbjct: 60  DPVLRTVAAPVEPKQLAGPELQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLEFPDRL 119

Query: 68  HRK-----------NPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            R             P    V +NP +         + EGC S+  + A V R   + + 
Sbjct: 120 FRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 179

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D   +  +  A G  A  +QHE+DHL+G LFID +
Sbjct: 180 GLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKM 216


>gi|325680310|ref|ZP_08159870.1| peptide deformylase [Ruminococcus albus 8]
 gi|324108019|gb|EGC02275.1| peptide deformylase [Ruminococcus albus 8]
          Length = 155

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D  L +  +P+EK +  +   +D+M E +   +G+GLAA Q+ +L R  +ID+ D     
Sbjct: 11  DETLHKKCKPVEKFDEKLWTWLDDMRETLAQANGVGLAAPQVAILRRFCIIDVGD----G 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
                INP+I   S++     EGCLS P+    V R   +  +  D N +   +    L 
Sbjct: 67  KVYELINPEITWKSEETQYVLEGCLSCPNEWGYVTRPKSVKFKAQDRNGEWYEMEVSDLF 126

Query: 131 ATCLQHELDHLNGILFID 148
           A  + HE  HL+G LF +
Sbjct: 127 AQAVCHETAHLDGHLFTE 144


>gi|114046443|ref|YP_736993.1| peptide deformylase [Shewanella sp. MR-7]
 gi|113887885|gb|ABI41936.1| peptide deformylase [Shewanella sp. MR-7]
          Length = 181

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL+  +  +   ++ +  L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIAVVGEAILKEQAIVVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +     A   NP+V +NP+I++ S D    +EGCLS+P  R  + R   I VRY +   
Sbjct: 75  PNERYPDAPLMNPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLAG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           Q Q     G +A   QHE DHL GI  ++
Sbjct: 135 QWQRSELTGFIARIFQHEFDHLQGITLLE 163


>gi|297171900|gb|ADI22887.1| N-formylmethionyl-tRNA deformylase [uncultured Rhizobium sp.
           HF0500_35F13]
          Length = 194

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 1/143 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P P LRR    + ++++++   I  M E+MY  +GIGLAA Q+ +  R  +++      
Sbjct: 6   YPHPALRRKCSIVRRVDAELRETISEMYELMYEANGIGLAANQVDLPLRFFIVNTAGDRD 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               +VFINP +++  +     +EGCLSIP     V R   I V+  +   Q        
Sbjct: 66  EGEELVFINP-VLSQPEGRGEEEEGCLSIPAVYGKVMRPTTIHVQAYNLEGQPFSAELSE 124

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
            LA  +QHE DHL+G+LF D +S
Sbjct: 125 TLARVVQHETDHLDGVLFTDRIS 147


>gi|289178547|gb|ADC85793.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 163

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 6/145 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           + PDP+LR    PI +I   + NL+ ++L+ +      G++A QIGV  R    ++    
Sbjct: 11  VVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFSYNIDGKI 70

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
                   +NP ++  +       EGCLS+P      KR+ +  VR MD +    ++  D
Sbjct: 71  G-----YVLNP-VLEETRGEQYGDEGCLSLPKLWYKTKRADYARVRGMDLDGNEIVLEGD 124

Query: 128 GLLATCLQHELDHLNGILFIDHLSR 152
           G++   LQHE DHL+G L+ID L +
Sbjct: 125 GIMGRMLQHETDHLDGHLYIDRLEK 149


>gi|88855570|ref|ZP_01130234.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
 gi|88815477|gb|EAR25335.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
          Length = 163

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR V  PI   +     LI +++E +      GLAA QIGV  R   
Sbjct: 1   MAVREIRLFGDPVLRSVCDPITVGDPHAAALIADLIESVQIPGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            INP +   S D  +  EGCLS+P +     R  F  V  +D + Q
Sbjct: 61  YNIDGEVG-----YIINPVLAEVSGDPELVDEGCLSVPGFYFLRSRYPFARVTGVDLDGQ 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMI 158
              +  +GL+A  LQHE DHL+G L+I+ L S  KR+ +
Sbjct: 116 PVELSGEGLMAQALQHETDHLDGHLYIEGLDSETKREAM 154


>gi|227489313|ref|ZP_03919629.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227540902|ref|ZP_03970951.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090686|gb|EEI25998.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183162|gb|EEI64134.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 180

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 13/158 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+VI  DP+L   ++P+E   S    LID+M E MY+ +G+GLAA Q+G+     V D +
Sbjct: 4   PIVICGDPVLHTPTQPVETPLSP--KLIDDMFETMYAANGVGLAANQVGLSQSFFVFDCE 61

Query: 65  DHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                    V +NP + T        D     EGCLS+P       R+++  V   D N 
Sbjct: 62  GVKG-----VVVNPVLETSEVPETMPDEEEDLEGCLSLPGEFFPTGRASWAKVTGTDENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID-HLSRLKRD 156
                  +  LA C QHE  HL G ++ D  + R +R+
Sbjct: 117 NPVEFEGEDFLARCFQHECGHLKGQVYTDVTIGRYRRE 154


>gi|115757064|ref|XP_790987.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115961483|ref|XP_001180273.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 186

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 19/158 (12%)

Query: 11  DPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR  S P+   +    +  +LI  M+ VM  T G+GLAA QIGV  ++ V++  +  
Sbjct: 14  DPVLRGKSDPVHPQDIRTKEFQDLIQKMVGVMRKTGGVGLAAPQIGVAQQVFVMEFTE-K 72

Query: 68  HRKN--------------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           H K               P+ VF+NP +   SD+  V  EGCLS+  + A   R+  + +
Sbjct: 73  HMKGFSEEIQKAREMEVVPLKVFVNPSLKILSDNQVVLTEGCLSLTGFTAATPRAHEVEI 132

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++   +       G  A  LQHE DHL G L+ID +
Sbjct: 133 TGLNEKGEPVTWRVCGYPARILQHEYDHLQGTLYIDRM 170


>gi|295839268|ref|ZP_06826201.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|295827384|gb|EDY42650.2| peptide deformylase [Streptomyces sp. SPB74]
          Length = 250

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           + RR +         +  L+ +M   MY  +G GLAA Q+GV  RL V D  D    ++ 
Sbjct: 69  LARRCAEATVFGTPGLARLVADMFLTMYLAEGAGLAANQVGVDLRLFVYDRFDDEGARHV 128

Query: 73  MVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              +N  I   +   ++ +  EGCLS+P  R  + R+    +R +D + +   I   G  
Sbjct: 129 GHVLNRVIDEAASGRALVEDVEGCLSVPGARHGLARADRTVLRGVDRDGRPVTIEGTGYF 188

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A CLQHE DHLNG++++D L +  R  +   M++
Sbjct: 189 ARCLQHETDHLNGMVYVDRLGKRARRAVLADMAE 222


>gi|94970942|ref|YP_592990.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
 gi|94552992|gb|ABF42916.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
          Length = 208

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 17/162 (10%)

Query: 6   LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           LV   +P+LR  + P+   E  + +I  LI++M + +    G+GLAA Q+GV  +L +I+
Sbjct: 17  LVQAGEPVLRTPAEPLAIKEIASREIARLIEDMRDTLEDAPGVGLAAPQVGVPIQLAIIE 76

Query: 63  LQDHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            +    +  P               V INP +         + EGCLS+  + A V R  
Sbjct: 77  DRAEYSKDIPTEQLAERGRVPVPFHVIINPVLKPLGKSQVDFFEGCLSVAGFIAVVPRYR 136

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + V  +D N   + I A G  A  LQHE+DHLNG L++D +
Sbjct: 137 KVRVTCLDENGAQRRIEASGWYARILQHEIDHLNGTLYVDRM 178


>gi|302340678|ref|YP_003805884.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
 gi|301637863|gb|ADK83290.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
          Length = 174

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 7/149 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVID 62
           + ++ F DP LR +   +   +  + + ID +   ++    G  LAA QI +L ++VVID
Sbjct: 8   ETIIRFGDPRLRVLCSEVAVFHKGLHDKIDCIARTLHQHGGGAALAAPQIALLKQIVVID 67

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                +       INP+I+  S   S+  EGCLS+P +   V+R   I V Y D   +  
Sbjct: 68  YLGEYYE-----LINPQIVEASGS-SIDYEGCLSLPGFWGQVERHQRIKVSYQDRFGEVY 121

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            + A   +A C QHE+DHL+G+LFID +S
Sbjct: 122 SVEAHDRMARCFQHEIDHLSGVLFIDRMS 150


>gi|160876705|ref|YP_001556021.1| peptide deformylase [Shewanella baltica OS195]
 gi|160862227|gb|ABX50761.1| peptide deformylase [Shewanella baltica OS195]
 gi|315268905|gb|ADT95758.1| peptide deformylase [Shewanella baltica OS678]
          Length = 185

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +     A    P+V +NP+II  S +    +EGCLS+P  R ++ R   I VRY +   
Sbjct: 75  PNERYPDAPNMAPVVVVNPQIIHASSELVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           + Q     G +A   QHE DHL GI  ++
Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLE 163


>gi|169826942|ref|YP_001697100.1| peptide deformylase 2 [Lysinibacillus sphaericus C3-41]
 gi|168991430|gb|ACA38970.1| Peptide deformylase 2 [Lysinibacillus sphaericus C3-41]
          Length = 185

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 9/115 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI---- 97
           GIGLAA Q+  L R+  + LQD A  +   V INPKI++ S  + +    EGCLS+    
Sbjct: 58  GIGLAANQVNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNV 117

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           P Y   V R A ITV++   + + + +   GL A   QHELDHLNG++F D ++ 
Sbjct: 118 PGY---VPRHARITVKFKTIDGEEKKMRLKGLPAIAFQHELDHLNGVMFYDRINE 169


>gi|291456898|ref|ZP_06596288.1| peptide deformylase [Bifidobacterium breve DSM 20213]
 gi|291382175|gb|EFE89693.1| peptide deformylase [Bifidobacterium breve DSM 20213]
          Length = 161

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++LE +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP I+          EGCLS+P      +R+ +  VR +D + +
Sbjct: 61  YNIDGKVG-----YVLNP-ILEEKSGEQYGDEGCLSVPGLWYKTRRAEYARVRGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   G++   LQHE DHL+G +++D L + +R    K M +
Sbjct: 115 EVVLEGTGIMGRMLQHECDHLDGHVYLDRLEKEERRAAMKYMRE 158


>gi|162457307|ref|YP_001619674.1| peptide deformylase [Sorangium cellulosum 'So ce 56']
 gi|161167889|emb|CAN99194.1| peptide deformylase [Sorangium cellulosum 'So ce 56']
          Length = 191

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 8/149 (5%)

Query: 11  DPILRRVSRPI--EKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           +P+LR+ +R +  E+++S  M   ID+++E M   +G G+AA Q+ V  R+  +++QD  
Sbjct: 11  NPVLRQRAREVTEEELSSPAMQAFIDDLVETMRDANGAGIAATQVHVPVRIFAVEVQDNP 70

Query: 66  -HAHRKN-PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            + ++ N P+ V +NP I   + +     EGCLS+P+ R  V R+  I +  +D   +  
Sbjct: 71  RYPYKPNIPLTVVVNPVIEPLTQETFENYEGCLSVPNLRGVVDRTTEIRLTGLDREGRPI 130

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
                GL A   QHE DH++G+LF+D + 
Sbjct: 131 DRVVRGLSAGTFQHEKDHVDGVLFVDRVK 159


>gi|194741016|ref|XP_001952985.1| GF17444 [Drosophila ananassae]
 gi|190626044|gb|EDV41568.1| GF17444 [Drosophila ananassae]
          Length = 238

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR+ + P+ +   ++ ++  +++ M+ V+   D +G+AA QIGV  R++ ++ +   
Sbjct: 56  DPVLRQKAAPVPQEHILSPEVEAIVEKMVRVLRKYDCVGIAAPQIGVSLRIIAMEFKGSI 115

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++ P               VFINP +   +     + EGC+S+  + ADV+R   +++ 
Sbjct: 116 RKELPEAVYQARQMTELPLTVFINPVLTVTNYTKLKHPEGCMSVRGFSADVERFEGVSIS 175

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + N     +   G  A   QHE+DHL+G L+ DH+ R
Sbjct: 176 GSNGNGVQNELELSGWNARIAQHEMDHLDGKLYTDHMDR 214


>gi|70934701|ref|XP_738539.1| formylmethionine deformylase [Plasmodium chabaudi chabaudi]
 gi|56514841|emb|CAH86596.1| formylmethionine deformylase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 132

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V++P+P+LR+ S  +   + ++ +L+  M + MY + GIGL+A Q+ +  R++V + L 
Sbjct: 20  IVMYPNPVLRQKSEEVLYFDDNLKDLVRRMFKTMYESKGIGLSAPQVNISKRIIVWNALY 79

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +    KN  VFINP II  S   +   EGCLS P+  A V+R A +++ Y D
Sbjct: 80  EKRDEKNERVFINPSIIQESAVKNKLVEGCLSFPNIEAKVERPAIVSISYYD 131


>gi|117919351|ref|YP_868543.1| peptide deformylase [Shewanella sp. ANA-3]
 gi|117611683|gb|ABK47137.1| peptide deformylase [Shewanella sp. ANA-3]
          Length = 176

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL++ +  +   +  + +L   M+  M    G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILKQQADEVRDFDEKLSHLASQMVASMVEAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +     A   +P+V +NP+I++ S +    +EGCLS+P  R  + R   I VRY D   
Sbjct: 75  PNERYPDAPLMDPVVVVNPQILSASAELVSGEEGCLSVPGQRFSIWRHQTIVVRYQDLAG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
             Q     G +A   QHE DHL GI  ++     ++ ++ ++
Sbjct: 135 HWQQTELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMARR 176


>gi|330807956|ref|YP_004352418.1| peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376064|gb|AEA67414.1| peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 179

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 72/150 (48%), Gaps = 8/150 (5%)

Query: 20  PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN------P 72
           P E  +S ++  LID+M + M S  G+GLAA QIGV  +LV+   + H+ R         
Sbjct: 21  PAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFE-HSERYPDAEAVPQ 79

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            + INP I           EGCLS+P  R  V+R   I     D   +  + YA G  A 
Sbjct: 80  TILINPLITPLGPQMEEGFEGCLSVPGLRGAVERYQDIRYEGFDPKGEPIVRYASGFHAR 139

Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +QHE DHL G L+   +S   +   T+ M
Sbjct: 140 VVQHECDHLIGRLYPSRISDFSKFGFTEVM 169


>gi|291240947|ref|XP_002740376.1| PREDICTED: peptide deformylase-like [Saccoglossus kowalevskii]
          Length = 270

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 17/155 (10%)

Query: 11  DPILRRVSRPIEK--INSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+LR  + P++   I S+ +N LI+ M+ VM     +GL+A QIGV  +++V++     
Sbjct: 98  DPVLRGKAVPVDPSDIGSNSINQLIEQMVAVMRRGQTVGLSAPQIGVGCQVIVMEYKKKH 157

Query: 63  --------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   +Q    ++ P+ +FINP++    D      EGC SI  Y A V+R   + + 
Sbjct: 158 MQMYSPAIIQQRGIKEFPLKIFINPQMKVLDDTKVTQLEGCESIKGYSAYVERYHAVEIT 217

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            +    + Q   ADG  A  +QHE+DHL G L+ID
Sbjct: 218 GLSPTGEMQSWKADGFPARIIQHEMDHLQGRLYID 252


>gi|319949867|ref|ZP_08023877.1| polypeptide deformylase [Dietzia cinnamea P4]
 gi|319436469|gb|EFV91579.1| polypeptide deformylase [Dietzia cinnamea P4]
          Length = 223

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 22/172 (12%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP L   + P+ +   +I +L+ ++ + M + +G+GLAA QIGV  R+ V
Sbjct: 1   MAVRPIVILGDPALHAPTEPVTESPEEIADLVRDLYDTMDAANGVGLAANQIGVRKRVFV 60

Query: 61  IDLQDHAHRKNPMV-----------------FINPKIITFS-----DDFSVYQEGCLSIP 98
            D  D        V                  INP + T        D     EGCLS+P
Sbjct: 61  YDCPDLDTEDGEGVSREEVEARGGWLNRRGCVINPVLETSEIPETMPDPEDDLEGCLSVP 120

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                  R+ +  V   D + +   +   GL A CLQHE+ HL+G ++ DHL
Sbjct: 121 GVNFPRGRAWWARVTGTDEHGEPVSVEGYGLFARCLQHEVGHLDGFVYTDHL 172


>gi|163855075|ref|YP_001629373.1| peptide deformylase [Bordetella petrii DSM 12804]
 gi|163258803|emb|CAP41102.1| peptide deformylase [Bordetella petrii]
          Length = 177

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L RV++P+ + ++ ++  L+ +M E M    G+GLAA QIGV  +LV+   + +   
Sbjct: 10  DPRLLRVAQPVGQFDTPELHELVADMFETMVHAKGVGLAAPQIGVDLQLVIFGFEHNERY 69

Query: 70  KN----PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +    P+ V  NP I   SD+     EGCLS+P  R  V R   I  R  D + Q    
Sbjct: 70  PDAPPVPLTVLCNPVITPRSDEREDGWEGCLSVPGLRGLVPRYRHIRYRGFDPHGQPIER 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+G  A  +QHE DHL G L+   +    +   T+
Sbjct: 130 EAEGFHARVVQHECDHLIGRLYPSRIEDFSKFGFTE 165


>gi|75762657|ref|ZP_00742499.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74489856|gb|EAO53230.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 156

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDVDD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|24645728|ref|NP_731495.1| CG31373 [Drosophila melanogaster]
 gi|23170932|gb|AAN13481.1| CG31373 [Drosophila melanogaster]
          Length = 196

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP+LR+ +   P E I+S +I  +ID M++V+   D +G+AA Q+G+  R++V++ ++  
Sbjct: 14  DPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 73

Query: 66  --------HAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   +  RK  +    VFINP++   S   + + EGC+S+  Y A+V+R   + +R
Sbjct: 74  QEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKVRIR 133

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +  +G  A   QHE+DHLNG +++D +
Sbjct: 134 GIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRM 170


>gi|225706662|gb|ACO09177.1| Peptide deformylase, mitochondrial precursor [Osmerus mordax]
          Length = 248

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           DP+LR  + P++    + S++  +I  M++VM     +GL+A Q+GV  R++ ++  +  
Sbjct: 77  DPVLRSHAAPVDPSAVLGSEVQEVIGAMVKVMRKLQCVGLSAPQVGVPLRILALEFPESM 136

Query: 67  ------AHRKN------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                 A R+       P+ VFINP++        ++QE C SI  + A V R   + V 
Sbjct: 137 LKDVSPAAREARGVAVVPLRVFINPQLRVLDRRTVLFQEACESISGFSARVPRYLEVEVS 196

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++  A+       G  A  LQHE+DHL+G+L+IDH+
Sbjct: 197 GLNEKAEPVTWEVSGWPARILQHEMDHLDGVLYIDHM 233


>gi|66771605|gb|AAY55114.1| IP07194p [Drosophila melanogaster]
          Length = 206

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP+LR+ +   P E I+S +I  +ID M++V+   D +G+AA Q+G+  R++V++ ++  
Sbjct: 24  DPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 83

Query: 66  --------HAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   +  RK  +    VFINP++   S   + + EGC+S+  Y A+V+R   + +R
Sbjct: 84  QEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKVRIR 143

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +  +G  A   QHE+DHLNG +++D +
Sbjct: 144 GIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRM 180


>gi|218899020|ref|YP_002447431.1| peptide deformylase [Bacillus cereus G9842]
 gi|228902371|ref|ZP_04066527.1| Peptide deformylase [Bacillus thuringiensis IBL 4222]
 gi|228909692|ref|ZP_04073515.1| Peptide deformylase [Bacillus thuringiensis IBL 200]
 gi|228966817|ref|ZP_04127861.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218544444|gb|ACK96838.1| peptide deformylase [Bacillus cereus G9842]
 gi|228792916|gb|EEM40474.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228849981|gb|EEM94812.1| Peptide deformylase [Bacillus thuringiensis IBL 200]
 gi|228857269|gb|EEN01773.1| Peptide deformylase [Bacillus thuringiensis IBL 4222]
          Length = 156

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D
Sbjct: 6   IVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDVDD 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ 
Sbjct: 66  DTGK---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 122 AEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|52141515|ref|YP_085313.1| peptide deformylase [Bacillus cereus E33L]
 gi|51974984|gb|AAU16534.1| polypeptide deformylase [Bacillus cereus E33L]
          Length = 184

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSR----PIEKINSD--------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57
           DPILR+V+     P  K +++        ++N  D  +   YS   GIGLAA QIG+  +
Sbjct: 12  DPILRKVAEEVVIPASKEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|320012174|gb|ADW07024.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331]
          Length = 169

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 65/140 (46%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           P L      +      +  L+++M   MY+ +G+GLAA QIGV  R+ V D  D    ++
Sbjct: 7   PALHSPCDDVTDFGPSLARLVEDMFATMYAANGVGLAANQIGVPLRVFVYDCPDDDEVRH 66

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
               +NP ++    D     EGCLS+P   A   R     V       +   I   G  A
Sbjct: 67  LGHLVNPVLVEADGDTVRGPEGCLSLPGIEAGTPRFDRAVVEGRTVAGEPVRITGTGWFA 126

Query: 132 TCLQHELDHLNGILFIDHLS 151
            CLQHE DHL+G ++ D L+
Sbjct: 127 RCLQHECDHLDGRVYTDRLT 146


>gi|31791607|ref|NP_854100.1| peptide deformylase [Mycobacterium bovis AF2122/97]
 gi|39930833|sp|Q7U206|DEF_MYCBO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|31617193|emb|CAD93300.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE
           DEFORMYLASE) [Mycobacterium bovis AF2122/97]
          Length = 197

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 17/171 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+       + +D+  LI  M + M + +G+GLAA QIG  
Sbjct: 1   MTVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60

Query: 56  YRLVVIDLQD----HAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKR 106
            RL V D        A R+   V INP + T        D     EGCLS+P       R
Sbjct: 61  LRLFVYDCAADRAMTARRRG--VVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGR 118

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRD 156
           + +  V  +D +     I   GL A  LQHE  HL+G L++D L  R  R+
Sbjct: 119 AKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARN 169


>gi|121610540|ref|YP_998347.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
 gi|121555180|gb|ABM59329.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
          Length = 186

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 74/143 (51%), Gaps = 7/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R++RP+   +++ +  L+ +ML+ M+  +G GLAA QIGV  +LVV    +H  R
Sbjct: 11  DPRLLRIARPVTGFDTEALHGLVRDMLDTMHDANGAGLAAPQIGVDLQLVVFGSGEHNPR 70

Query: 70  ---KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
              + P+   V +NP I     D     EGCLS+P  R  V R + I    +D       
Sbjct: 71  YPGRPPVPLTVLLNPVITPLGQDEKEDWEGCLSVPGLRGMVPRWSRIRYTGVDPYGHPID 130

Query: 124 IYADGLLATCLQHELDHLNGILF 146
              DG  A  +QHE DHL G L+
Sbjct: 131 RSVDGFHARVVQHECDHLVGKLY 153


>gi|15607570|ref|NP_214943.1| peptide deformylase [Mycobacterium tuberculosis H37Rv]
 gi|15839816|ref|NP_334853.1| peptide deformylase [Mycobacterium tuberculosis CDC1551]
 gi|121636343|ref|YP_976566.1| peptide deformylase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660194|ref|YP_001281717.1| peptide deformylase [Mycobacterium tuberculosis H37Ra]
 gi|148821625|ref|YP_001286379.1| peptide deformylase [Mycobacterium tuberculosis F11]
 gi|167970754|ref|ZP_02553031.1| peptide deformylase [Mycobacterium tuberculosis H37Ra]
 gi|215402181|ref|ZP_03414362.1| peptide deformylase [Mycobacterium tuberculosis 02_1987]
 gi|215409945|ref|ZP_03418753.1| peptide deformylase [Mycobacterium tuberculosis 94_M4241A]
 gi|215425650|ref|ZP_03423569.1| peptide deformylase [Mycobacterium tuberculosis T92]
 gi|215429251|ref|ZP_03427170.1| peptide deformylase [Mycobacterium tuberculosis EAS054]
 gi|215444525|ref|ZP_03431277.1| peptide deformylase [Mycobacterium tuberculosis T85]
 gi|218752062|ref|ZP_03530858.1| peptide deformylase [Mycobacterium tuberculosis GM 1503]
 gi|219556250|ref|ZP_03535326.1| peptide deformylase [Mycobacterium tuberculosis T17]
 gi|224988815|ref|YP_002643502.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797353|ref|YP_003030354.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435]
 gi|254230779|ref|ZP_04924106.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis C]
 gi|254363393|ref|ZP_04979439.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549376|ref|ZP_05139823.1| peptide deformylase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185296|ref|ZP_05762770.1| peptide deformylase [Mycobacterium tuberculosis CPHL_A]
 gi|260199427|ref|ZP_05766918.1| peptide deformylase [Mycobacterium tuberculosis T46]
 gi|260203579|ref|ZP_05771070.1| peptide deformylase [Mycobacterium tuberculosis K85]
 gi|289441809|ref|ZP_06431553.1| polypeptide deformylase [Mycobacterium tuberculosis T46]
 gi|289445969|ref|ZP_06435713.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A]
 gi|289552678|ref|ZP_06441888.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605]
 gi|289568345|ref|ZP_06448572.1| polypeptide deformylase def [Mycobacterium tuberculosis T17]
 gi|289573014|ref|ZP_06453241.1| polypeptide deformylase def [Mycobacterium tuberculosis K85]
 gi|289744125|ref|ZP_06503503.1| peptide deformylase [Mycobacterium tuberculosis 02_1987]
 gi|289748913|ref|ZP_06508291.1| polypeptide deformylase def [Mycobacterium tuberculosis T92]
 gi|289752458|ref|ZP_06511836.1| peptide deformylase [Mycobacterium tuberculosis EAS054]
 gi|289756502|ref|ZP_06515880.1| polypeptide deformylase def [Mycobacterium tuberculosis T85]
 gi|289760545|ref|ZP_06519923.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis GM 1503]
 gi|294995934|ref|ZP_06801625.1| peptide deformylase [Mycobacterium tuberculosis 210]
 gi|297632913|ref|ZP_06950693.1| peptide deformylase [Mycobacterium tuberculosis KZN 4207]
 gi|297729888|ref|ZP_06959006.1| peptide deformylase [Mycobacterium tuberculosis KZN R506]
 gi|298523906|ref|ZP_07011315.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306774525|ref|ZP_07412862.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001]
 gi|306779274|ref|ZP_07417611.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002]
 gi|306783063|ref|ZP_07421385.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003]
 gi|306787430|ref|ZP_07425752.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004]
 gi|306791982|ref|ZP_07430284.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005]
 gi|306796169|ref|ZP_07434471.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006]
 gi|306802026|ref|ZP_07438694.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008]
 gi|306806238|ref|ZP_07442906.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007]
 gi|306966434|ref|ZP_07479095.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009]
 gi|306970629|ref|ZP_07483290.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010]
 gi|307078354|ref|ZP_07487524.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011]
 gi|307082913|ref|ZP_07492026.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012]
 gi|313657217|ref|ZP_07814097.1| peptide deformylase [Mycobacterium tuberculosis KZN V2475]
 gi|6225255|sp|P96275|DEF_MYCTU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512922|sp|A1KFQ1|DEF_MYCBP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158513357|sp|A5TZF5|DEF_MYCTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767595|sp|C1AKA5|DEF_MYCBT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|221046693|pdb|3E3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Peptide
           Deformylase In Complex With Inhibitor
 gi|1817695|emb|CAB06569.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE
           DEFORMYLASE) [Mycobacterium tuberculosis H37Rv]
 gi|13879947|gb|AAK44667.1| peptide deformylase [Mycobacterium tuberculosis CDC1551]
 gi|121491990|emb|CAL70453.1| Probable polypeptide deformylase def [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124599838|gb|EAY58848.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis C]
 gi|134148907|gb|EBA40952.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504346|gb|ABQ72155.1| peptide deformylase [Mycobacterium tuberculosis H37Ra]
 gi|148720152|gb|ABR04777.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis F11]
 gi|224771928|dbj|BAH24734.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253318856|gb|ACT23459.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435]
 gi|289414728|gb|EFD11968.1| polypeptide deformylase [Mycobacterium tuberculosis T46]
 gi|289418927|gb|EFD16128.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A]
 gi|289437310|gb|EFD19803.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605]
 gi|289537445|gb|EFD42023.1| polypeptide deformylase def [Mycobacterium tuberculosis K85]
 gi|289542098|gb|EFD45747.1| polypeptide deformylase def [Mycobacterium tuberculosis T17]
 gi|289684653|gb|EFD52141.1| peptide deformylase [Mycobacterium tuberculosis 02_1987]
 gi|289689500|gb|EFD56929.1| polypeptide deformylase def [Mycobacterium tuberculosis T92]
 gi|289693045|gb|EFD60474.1| peptide deformylase [Mycobacterium tuberculosis EAS054]
 gi|289708051|gb|EFD72067.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289712066|gb|EFD76078.1| polypeptide deformylase def [Mycobacterium tuberculosis T85]
 gi|298493700|gb|EFI28994.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308216874|gb|EFO76273.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001]
 gi|308327718|gb|EFP16569.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002]
 gi|308332080|gb|EFP20931.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003]
 gi|308335895|gb|EFP24746.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004]
 gi|308339472|gb|EFP28323.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005]
 gi|308343337|gb|EFP32188.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006]
 gi|308347247|gb|EFP36098.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007]
 gi|308351177|gb|EFP40028.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008]
 gi|308355830|gb|EFP44681.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009]
 gi|308359750|gb|EFP48601.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010]
 gi|308363691|gb|EFP52542.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011]
 gi|308367344|gb|EFP56195.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012]
 gi|323721101|gb|EGB30163.1| polypeptide deformylase def [Mycobacterium tuberculosis CDC1551A]
 gi|326902255|gb|EGE49188.1| polypeptide deformylase def [Mycobacterium tuberculosis W-148]
 gi|328457139|gb|AEB02562.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 4207]
          Length = 197

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 17/171 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+       + +D+  LI  M + M + +G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60

Query: 56  YRLVVIDLQD----HAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKR 106
            RL V D        A R+   V INP + T        D     EGCLS+P       R
Sbjct: 61  LRLFVYDCAADRAMTARRRG--VVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGR 118

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRD 156
           + +  V  +D +     I   GL A  LQHE  HL+G L++D L  R  R+
Sbjct: 119 AKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARN 169


>gi|302540288|ref|ZP_07292630.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302457906|gb|EFL20999.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 225

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 5   PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V    P+LR+ + P +    +  +  L+  M E M++  G+GLAA QIGV  RL VI+
Sbjct: 21  PIVSAGLPVLRQAALPYDGQLPDGQLDRLLRAMRETMHNAPGVGLAAPQIGVPLRLAVIE 80

Query: 63  LQD-------HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                      A  + P    V +NP      D  + + EGCLS+P ++A V R   I +
Sbjct: 81  DPAEVATEVREARGRVPQPYRVLVNPSYEPVGDARAAFFEGCLSVPGWQAVVSRPERIRL 140

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           R  D   +       G  A  +QHE DHL+G+L++D
Sbjct: 141 RGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176


>gi|86140860|ref|ZP_01059419.1| putative polypeptide deformylase protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832802|gb|EAQ51251.1| putative polypeptide deformylase protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 219

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 79/155 (50%), Gaps = 13/155 (8%)

Query: 11  DPILRRVSRPIEKINSD-----IMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDL 63
           D +L R   P E +  D     +MNLID M   +  +   G G+AA Q+G+L R+  +  
Sbjct: 57  DSLLLRT--PSEAVTVDPKDTVLMNLIDRMYTTVRDSLSLGAGIAAPQVGILKRIAWV-- 112

Query: 64  QDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF-ITVRYMDCNAQH 121
           Q       P  V INP I  +S       EGCLSIP  R  +   A+ I V Y   +A H
Sbjct: 113 QRFDKEGFPFEVIINPVIKQYSKKKQDCPEGCLSIPGRRDTLSTRAYAILVEYDKPDASH 172

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
           +I   +   A   QHE+DHLNGIL++DHL +  +D
Sbjct: 173 EIEMVEDFTAVVFQHEIDHLNGILYLDHLKQEIKD 207


>gi|23008036|ref|ZP_00049646.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 145

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 80/133 (60%), Gaps = 5/133 (3%)

Query: 34  NMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQE 92
           ++L+ + +   +GL A  IG   RLVVI LQ D  H      +++P ++  S + + + E
Sbjct: 8   DVLDTLGAVSAMGLTAPHIGRPERLVVIRLQPDEPH----ATYVDPVVVWASAERASHPE 63

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           G +S+P     V+R A + VRY D + +     A+GL A CLQHE+D L+GI +ID L+R
Sbjct: 64  GSVSMPGVVEPVERPARVRVRYRDLDGETHEEEAEGLRAACLQHEIDQLDGIFWIDRLTR 123

Query: 153 LKRDMITKKMSKL 165
           L+RD + K+ +KL
Sbjct: 124 LRRDRVLKRFAKL 136


>gi|229104578|ref|ZP_04235242.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-28]
 gi|228678825|gb|EEL33038.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-28]
          Length = 184

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYR 57
           DPILR V+  +     EK  + +  +I+         M E      GIGLAA QIGV  +
Sbjct: 12  DPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|300704236|ref|YP_003745839.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
 gi|299071900|emb|CBJ43229.1| Peptide deformylase [Ralstonia solanacearum CFBP2957]
          Length = 177

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 10/151 (6%)

Query: 4   KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +P++   D  L RV++P+++  + ++  LI++M + M +  G GLAA QIGV  ++V+  
Sbjct: 3   RPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFG 62

Query: 63  L-QDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
             ++  +   P     V INP I   SD+     EGCLS+P  R  V R  +  +RY   
Sbjct: 63  FDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPR--YTRLRYTGF 120

Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILF 146
           +     I   A+G  A  +QHE DHL GIL+
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILY 151


>gi|229098440|ref|ZP_04229384.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-29]
 gi|228684963|gb|EEL38897.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-29]
          Length = 182

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYR 57
           DPILR V+  +     EK  + +  +I+         M E      GIGLAA QIGV  +
Sbjct: 9   DPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 68

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 69  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 125

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 126 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166


>gi|195055504|ref|XP_001994657.1| GH17361 [Drosophila grimshawi]
 gi|193892420|gb|EDV91286.1| GH17361 [Drosophila grimshawi]
          Length = 234

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 17/159 (10%)

Query: 11  DPILR-RVSR-PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61
           DP+LR R +  P + +NS +I  ++D M+ V+   D +G+AA QIGV  R++ +      
Sbjct: 52  DPVLRDRAAEVPADCVNSKEIHAIVDQMVHVLRKFDCVGIAAPQIGVSLRIIAMEFRRSI 111

Query: 62  --DLQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             DL D  +++  M      V INP++   +     + EGC+S+  + A+V+R   + + 
Sbjct: 112 KKDLSDATYKRRQMSELPLTVLINPQLTVTNYTKHKHPEGCMSVRGFSAEVERYEGVKLS 171

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +D    H  +   G  A   QHE++HL+G L+ DH+ R
Sbjct: 172 GLDRQGVHSELELSGWNARIAQHEMEHLDGKLYTDHMDR 210


>gi|296135817|ref|YP_003643059.1| peptide deformylase [Thiomonas intermedia K12]
 gi|295795939|gb|ADG30729.1| peptide deformylase [Thiomonas intermedia K12]
          Length = 177

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA-H 68
           DP L RV++P+ K ++ ++  LI ++ E M +  G+GLAA QIGV   +V+      A +
Sbjct: 11  DPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVVIFGFSQSARY 70

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P     V INP+I    D      EGCLS+P  R  V R   I  R MD        
Sbjct: 71  PEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRGMDAYGNPIDR 130

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            A+G  A  +QHE DHL G L+   +    R   T ++
Sbjct: 131 EAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168


>gi|41410016|ref|NP_962852.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|254777164|ref|ZP_05218680.1| peptide deformylase [Mycobacterium avium subsp. avium ATCC 25291]
 gi|81700308|sp|Q73T03|DEF_MYCPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|41398849|gb|AAS06468.1| Def [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 197

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++P+       + +D+  LI +M + M +  G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTQPVPVGDDGSLPADLGKLIADMYDTMDAAHGVGLAANQIGVG 60

Query: 56  YRLVVIDLQDHAH--RKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D      +   V +NP + T        D     EGCLS+P       R++
Sbjct: 61  LRVFVYDCADDRGLTERRRGVVVNPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAS 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     I   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGNPVSIEGHGLFARMLQHETGHLDGFLYLDRL 162


>gi|42783070|ref|NP_980317.1| peptide deformylase [Bacillus cereus ATCC 10987]
 gi|206978074|ref|ZP_03238958.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217961461|ref|YP_002340029.1| peptide deformylase [Bacillus cereus AH187]
 gi|222097423|ref|YP_002531480.1| peptide deformylase [Bacillus cereus Q1]
 gi|229140704|ref|ZP_04269252.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST26]
 gi|229198091|ref|ZP_04324802.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1293]
 gi|42738998|gb|AAS42925.1| polypeptide deformylase [Bacillus cereus ATCC 10987]
 gi|206743701|gb|EDZ55124.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217068218|gb|ACJ82468.1| peptide deformylase [Bacillus cereus AH187]
 gi|221241481|gb|ACM14191.1| polypeptide deformylase [Bacillus cereus Q1]
 gi|228585389|gb|EEK43496.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1293]
 gi|228642776|gb|EEK99059.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST26]
 gi|324327875|gb|ADY23135.1| peptide deformylase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 184

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 82/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           DPILR V+  +    + +  N +  M+E V+ S D           GIGLAA QIG+  R
Sbjct: 12  DPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKR 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|195157966|ref|XP_002019865.1| GL12632 [Drosophila persimilis]
 gi|194116456|gb|EDW38499.1| GL12632 [Drosophila persimilis]
          Length = 196

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP+LR+++   P E I + +I  ++D M++V+   D +G+AA Q+GV  R++V++ ++  
Sbjct: 14  DPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGVPLRIIVMEFREGK 73

Query: 66  --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   +A RK    P+ VFINP++   S   + + EGC+S+  Y A V+R   + ++
Sbjct: 74  QEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGYSAQVERYERVRIK 133

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +  +G  A   QHE+DHLNG +++D +
Sbjct: 134 GIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRM 170


>gi|187477209|ref|YP_785233.1| peptide deformylase [Bordetella avium 197N]
 gi|115421795|emb|CAJ48306.1| peptide deformylase [Bordetella avium 197N]
          Length = 177

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L RV+ P+E+  S ++  LID+M + M    G+GLAA QIGV  +LV+   + +   
Sbjct: 10  DPRLLRVAAPVERFGSAELKQLIDDMFDTMAYAHGVGLAAPQIGVDLQLVIFGFERNPRY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V  NP I   SD+     EGCLS+P  R  V R  +I  +    +      
Sbjct: 70  PDAPAVPKTVLCNPVITPLSDEMEDGWEGCLSVPGLRGLVPRYQYIRYQGFAPDGTAIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A G  A  +QHE DHL G L+
Sbjct: 130 EASGFHARVVQHECDHLIGRLY 151


>gi|119910219|ref|XP_001255524.1| PREDICTED: peptide deformylase-like [Bos taurus]
 gi|119936845|ref|XP_001251630.1| PREDICTED: peptide deformylase-like [Bos taurus]
 gi|297485396|ref|XP_002694953.1| PREDICTED: peptide deformylase-like [Bos taurus]
 gi|296478169|gb|DAA20284.1| peptide deformylase-like [Bos taurus]
          Length = 250

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP LR V+ P+E       ++  L++ +++VM     +GL+A Q+GV  +++ ++  +  
Sbjct: 79  DPALRAVAAPVEPAQLAGPELQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLALEFPETL 138

Query: 66  ---------HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                     A +  P    VF+NP +         + EGC S+  + A V R   + + 
Sbjct: 139 FRACAPRVREARQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 198

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D   +  +  A G  A  +QHE+DHL G LFID +
Sbjct: 199 GLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 235


>gi|162455696|ref|YP_001618063.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56']
 gi|161166278|emb|CAN97583.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56']
          Length = 203

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 27/187 (14%)

Query: 5   PLVIFPDPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           P+V+    +LR+ + P+  E+I +  + +L+  M+ VM    G+GLAA QIGV  +++V+
Sbjct: 5   PIVLAGRAVLRKPAAPVPPEEIGTKRLKHLVSTMVSVMRKAPGVGLAAPQIGVDQQVIVL 64

Query: 62  -DLQDHAHRKNP-------------MVFINPKIITFSDDF--------SVYQEGCLSIPD 99
            D ++   R  P              V INP +   +           + + EGCLS+P 
Sbjct: 65  EDSEELMSRLTPGQRAERGRVPFRLRVIINPTLRVLAPSLPDAAGAGRATFFEGCLSVPG 124

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           Y A V+R   + V  +D + +     A G  A  LQHE+DHL G L++D +  + R   +
Sbjct: 125 YMALVERDLSVEVSGVDEDGKEVRWEATGWPARILQHEVDHLRGTLYVDRM--VTRSFCS 182

Query: 160 KKMSKLV 166
            + +KL+
Sbjct: 183 NEEAKLL 189


>gi|207743249|ref|YP_002259641.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein
           [Ralstonia solanacearum IPO1609]
 gi|206594646|emb|CAQ61573.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein
           [Ralstonia solanacearum IPO1609]
          Length = 177

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 10/151 (6%)

Query: 4   KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +P++   D  L RV++P+++  + ++  LI++M + M +  G GLAA QIGV  ++V+  
Sbjct: 3   RPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFG 62

Query: 63  L-QDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
             ++  +   P     V INP I   SD+     EGCLS+P  R  V R  +  +RY   
Sbjct: 63  FDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPR--YTRLRYTGY 120

Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILF 146
           +     I   A+G  A  +QHE DHL GIL+
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILY 151


>gi|30021955|ref|NP_833586.1| peptide deformylase [Bacillus cereus ATCC 14579]
 gi|206971120|ref|ZP_03232071.1| peptide deformylase [Bacillus cereus AH1134]
 gi|218232337|ref|YP_002368668.1| peptide deformylase [Bacillus cereus B4264]
 gi|228940955|ref|ZP_04103514.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228954144|ref|ZP_04116172.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960083|ref|ZP_04121747.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228973884|ref|ZP_04134460.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980474|ref|ZP_04140784.1| Peptide deformylase [Bacillus thuringiensis Bt407]
 gi|229047554|ref|ZP_04193144.1| Peptide deformylase [Bacillus cereus AH676]
 gi|229071365|ref|ZP_04204588.1| Peptide deformylase [Bacillus cereus F65185]
 gi|229081122|ref|ZP_04213632.1| Peptide deformylase [Bacillus cereus Rock4-2]
 gi|229111338|ref|ZP_04240891.1| Peptide deformylase [Bacillus cereus Rock1-15]
 gi|229129143|ref|ZP_04258116.1| Peptide deformylase [Bacillus cereus BDRD-Cer4]
 gi|229146438|ref|ZP_04274809.1| Peptide deformylase [Bacillus cereus BDRD-ST24]
 gi|229152066|ref|ZP_04280261.1| Peptide deformylase [Bacillus cereus m1550]
 gi|229180143|ref|ZP_04307487.1| Peptide deformylase [Bacillus cereus 172560W]
 gi|229192036|ref|ZP_04319006.1| Peptide deformylase [Bacillus cereus ATCC 10876]
 gi|296504362|ref|YP_003666062.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|39931054|sp|Q819U0|DEF1_BACCR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|78100858|pdb|1WS0|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus
           Cereus
 gi|78100859|pdb|1WS1|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus
           Cereus
 gi|29897511|gb|AAP10787.1| Polypeptide deformylase [Bacillus cereus ATCC 14579]
 gi|206733892|gb|EDZ51063.1| peptide deformylase [Bacillus cereus AH1134]
 gi|218160294|gb|ACK60286.1| peptide deformylase [Bacillus cereus B4264]
 gi|228591587|gb|EEK49436.1| Peptide deformylase [Bacillus cereus ATCC 10876]
 gi|228603352|gb|EEK60829.1| Peptide deformylase [Bacillus cereus 172560W]
 gi|228631415|gb|EEK88049.1| Peptide deformylase [Bacillus cereus m1550]
 gi|228637071|gb|EEK93530.1| Peptide deformylase [Bacillus cereus BDRD-ST24]
 gi|228654380|gb|EEL10245.1| Peptide deformylase [Bacillus cereus BDRD-Cer4]
 gi|228672114|gb|EEL27405.1| Peptide deformylase [Bacillus cereus Rock1-15]
 gi|228702166|gb|EEL54642.1| Peptide deformylase [Bacillus cereus Rock4-2]
 gi|228711819|gb|EEL63771.1| Peptide deformylase [Bacillus cereus F65185]
 gi|228723801|gb|EEL75156.1| Peptide deformylase [Bacillus cereus AH676]
 gi|228779294|gb|EEM27551.1| Peptide deformylase [Bacillus thuringiensis Bt407]
 gi|228785909|gb|EEM33912.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228799599|gb|EEM46552.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228805464|gb|EEM52055.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228818791|gb|EEM64857.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|296325414|gb|ADH08342.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|326941636|gb|AEA17532.1| peptide deformylase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 156

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 81/143 (56%), Gaps = 4/143 (2%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V+D+ D   +
Sbjct: 10  PNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDVDDDTGK 69

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +  ++ A+G 
Sbjct: 70  ---IELINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGF 125

Query: 130 LATCLQHELDHLNGILFIDHLSR 152
           LA  +QHE+DHL+G+LF   ++R
Sbjct: 126 LARAIQHEIDHLHGVLFTSKVTR 148


>gi|227872147|ref|ZP_03990517.1| peptide deformylase [Oribacterium sinus F0268]
 gi|227842005|gb|EEJ52265.1| peptide deformylase [Oribacterium sinus F0268]
          Length = 164

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 4/141 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           D IL +  + I+++     +LI +M E MY  +G+GLAA Q+G+L +L V+D+ D     
Sbjct: 11  DSILEKKCKEIKEMTDKTRDLIQDMFETMYDANGVGLAAPQVGILKQLFVVDIGDGVR-- 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              V INPKI    ++    +EGCLS+P     V R   I +  +D N +   + A G L
Sbjct: 69  --YVCINPKIEAVGEEEQCGEEGCLSVPGKEGKVTRPMNIHLEALDQNMEPFSLDASGFL 126

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A    HE DHL G+L+ + + 
Sbjct: 127 ARAFCHEYDHLQGVLYTEKVE 147


>gi|323704619|ref|ZP_08116197.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536081|gb|EGB25854.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 117

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 67/103 (65%), Gaps = 6/103 (5%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DPIL + ++ +EKI+  I+ ++++M E MY+ DG+GLAA QIG+L RLVV+D+ +     
Sbjct: 11  DPILYKKAKQVEKIDEHILMILEDMAETMYNADGVGLAANQIGILRRLVVVDVGE----- 65

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             +  INP+II   +   +  EGCLS+P+   +V R A + V+
Sbjct: 66  GLIELINPEII-LEEGEQIGVEGCLSVPNVTGEVIRPAKVRVK 107


>gi|294632567|ref|ZP_06711127.1| peptide deformylase [Streptomyces sp. e14]
 gi|292835900|gb|EFF94249.1| peptide deformylase [Streptomyces sp. e14]
          Length = 215

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++  +++      L V M +  G+GLAAVQ+GV  R+ VI+
Sbjct: 25  PIVSAGDPVLRRPAEPYDGQLAPELLARFVQALRVTMRTAPGVGLAAVQVGVGLRIAVIE 84

Query: 63  LQDH-------AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                      A  + P  F   +NP         + + EGCLS+P ++A V R A + +
Sbjct: 85  DPAPVPEEVRVARERVPQPFRVLVNPSYEPVGARRAAFFEGCLSVPGWQAVVARHAEVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           R  D + +       G  A  +QHE DHL+G+L++D 
Sbjct: 145 RARDEHGRAVDEVFTGWPARIVQHETDHLDGVLYVDR 181


>gi|229117467|ref|ZP_04246841.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-3]
 gi|228665972|gb|EEL21440.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-3]
          Length = 181

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYR 57
           DPILR V+  +     EK  + +  +I+         M E      GIGLAA QIGV  +
Sbjct: 9   DPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 68

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 69  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 125

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 126 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166


>gi|308177432|ref|YP_003916838.1| peptide deformylase [Arthrobacter arilaitensis Re117]
 gi|307744895|emb|CBT75867.1| peptide deformylase [Arthrobacter arilaitensis Re117]
          Length = 213

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 12/156 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V    P+LR+ +   E ++ +D++  L++ M + MY   G+GLAA Q+G+  ++ V++
Sbjct: 28  PIVQLGHPVLRQQAVAYENQLPTDLLEELLEAMRQTMYDAPGVGLAAPQVGIPLQIAVLE 87

Query: 63  ----LQDHA---HRKNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
               + + A     + P+ +    NP+ ++ S+  +V+ EGCLS   ++  V R A I+ 
Sbjct: 88  DLYPIPEEAATMREREPLEYFEIFNPEYVSASEREAVFYEGCLSFDGFQGVVTRPADISA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            Y D + Q       G  A  +QHE DHL+G ++ID
Sbjct: 148 TYKDRDGQEITRSFSGWQARIVQHEADHLSGTVYID 183


>gi|113971372|ref|YP_735165.1| peptide deformylase [Shewanella sp. MR-4]
 gi|113886056|gb|ABI40108.1| peptide deformylase [Shewanella sp. MR-4]
          Length = 181

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL+  +  +   ++ +  L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIAVVGEAILKEQAVEVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +     A   +P+V +NP+I++ S D    +EGCLS+P  R  + R   I VRY +   
Sbjct: 75  PNERYPDAPLMDPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLAG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           Q Q     G +A   QHE DHL GI  ++
Sbjct: 135 QWQRSELTGFIARIFQHEFDHLQGITLLE 163


>gi|114564402|ref|YP_751916.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
 gi|114335695|gb|ABI73077.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
          Length = 170

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 1   MVKKPLVIFP---DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  KPL+      + IL +++ P+   +  +  L DNML  M + +G+G+AA Q+     
Sbjct: 1   MQPKPLLSIATTGEQILTQIAEPVTVFDDALHTLADNMLSTMLNANGVGIAATQVFSNAA 60

Query: 58  LVVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           + ++    +     A    P V INP+I++ S       EGCLSIP  R  + R + I V
Sbjct: 61  MFIMASNPNERYPDAPSMPPTVVINPQILSASAATEADVEGCLSIPGQRLSIARHSEIEV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           +Y   + Q       G +A   QHE DHL GI  ++ ++ +   ++  +
Sbjct: 121 QYQSLDGQLHQQTLTGFVARIFQHEYDHLQGITLLERVNIMTPQILVPQ 169


>gi|300691609|ref|YP_003752604.1| peptide deformylase [Ralstonia solanacearum PSI07]
 gi|299078669|emb|CBJ51327.1| Peptide deformylase [Ralstonia solanacearum PSI07]
          Length = 170

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 12/145 (8%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D  L RV++P+++  + ++  LI++M + M +  G GLAA QIGV  ++V+    D + R
Sbjct: 3   DSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRSER 61

Query: 70  KN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                     V INP I   SD+     EGCLS+P  R  V R  +  +RY   +   Q 
Sbjct: 62  YPDAPAVPKTVLINPTIEPLSDEMEDGWEGCLSVPGLRGVVPR--YTRLRYTGYDQHGQA 119

Query: 124 I--YADGLLATCLQHELDHLNGILF 146
           I   A+G  A  +QHE DHL GIL+
Sbjct: 120 IDRIAEGFHARVVQHECDHLQGILY 144


>gi|328949669|ref|YP_004367004.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
 gi|328449993|gb|AEB10894.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
          Length = 178

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 12/152 (7%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVM-----YSTDGIGLAAVQIGVLYRLVVIDLQ 64
           +P+LR VS P+E   S ++  +++++ + +      +T G G+AA QIGVL R+V ++L 
Sbjct: 11  NPLLREVSEPVEDPTSPEVARIVEDLRDTLAHWRATTTYGRGIAAPQIGVLKRIVFLNLP 70

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +      P   INP I   S +  V  + CLS       V+R   +TVRY D       +
Sbjct: 71  E----LGPWPLINPTITAKSPETMVVWDACLSFLSIFMQVERHREVTVRYQDLRGTWHEV 126

Query: 125 YADGL--LATCLQHELDHLNGILFIDHLSRLK 154
            A     L+  LQHE+DHL+GIL ID +  +K
Sbjct: 127 RAGEAHNLSELLQHEIDHLDGILAIDRVVDVK 158


>gi|317124743|ref|YP_004098855.1| peptide deformylase [Intrasporangium calvum DSM 43043]
 gi|315588831|gb|ADU48128.1| peptide deformylase [Intrasporangium calvum DSM 43043]
          Length = 181

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K + +F DP+LR  +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIKDIRLFGDPVLRTPAAEVIDFDKELRVLVQDLQDTMLDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             +     H  NP+       +  SD+     EGCLSIP    + +R+  +  +  + + 
Sbjct: 61  YWVDGIVGHLVNPL-------LALSDEEQEGPEGCLSIPGVTVETRRALSVVAKGQNMHG 113

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +  ++    LLA  +QHE DHL+GILF+D L    R
Sbjct: 114 EPVVLEGTELLARAVQHETDHLDGILFVDRLDPAAR 149


>gi|116670982|ref|YP_831915.1| peptide deformylase [Arthrobacter sp. FB24]
 gi|116611091|gb|ABK03815.1| peptide deformylase [Arthrobacter sp. FB24]
          Length = 190

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 7/152 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  RL V    
Sbjct: 5   PITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRLFVYKFA 64

Query: 65  DHAHRKNPMVFINPKIITFSD------DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +        V +NP ++T S       D     EGCLS P  +  +KR+ +  V+  D +
Sbjct: 65  NDDGVPPAGVVVNP-VLTLSKVSGALPDPDEEVEGCLSFPGGQYPLKRAEWARVQGFDGD 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                  A    A  +QHE DHL+G L+++ L
Sbjct: 124 GNPVDFEATEWFARIIQHEYDHLDGKLYVNRL 155


>gi|120401747|ref|YP_951576.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1]
 gi|158513127|sp|A1T320|DEF_MYCVP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|119954565|gb|ABM11570.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1]
          Length = 197

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +P+ I  DP+L   + P+       + +D+ +LI +M + M +  G+GLAA QIGV 
Sbjct: 1   MAVRPIRIVGDPVLHTATEPVPVGADGSLPADLADLITDMYDTMDAAHGVGLAANQIGVS 60

Query: 56  YRLVVIDLQDHAHR--KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   +  +   V INP + T        D     EGCLS+P       R+ 
Sbjct: 61  KRVFVYDCADERKKTTRRRGVVINPVLETSEIPETMPDPEDDDEGCLSVPGESFPTGRAD 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     +    L A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGTPITLEGTDLFARMLQHETGHLDGFLYLDRL 162


>gi|325529284|gb|EGD06233.1| peptide deformylase [Burkholderia sp. TJI49]
          Length = 177

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68
           DP L  V+RP+E+ ++ ++  ++ +M E M+  +G GLAA QIGV  ++++     ++ +
Sbjct: 10  DPRLLEVARPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGVGLQIIIFGFGSNNRY 69

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P     V INPK+     D     EGCLS+P  R  V R A +     D        
Sbjct: 70  PEAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGAKLDR 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+G  A  +QHE DHL G L+   ++   R   T+
Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165


>gi|145596781|ref|YP_001161078.1| formylmethionine deformylase [Salinispora tropica CNB-440]
 gi|145306118|gb|ABP56700.1| formylmethionine deformylase [Salinispora tropica CNB-440]
          Length = 187

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62
           +P+V  P  +L R  R ++      + L  +++  M  + G +GLAA QIGV  R+  +D
Sbjct: 24  RPVVSAPAAVLSRAGRDVDPTAEQTVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAVD 83

Query: 63  LQDH--AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MDCNA 119
           +  H  A   +    +   ++  +  +   +EGC+S+PD   DVKR+  + V   +    
Sbjct: 84  VTGHPKASTGHGAFVLCNAVVVEASRWKAGREGCMSVPDLTGDVKRAGRLVVEGDLPGTG 143

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +   +  D   A  LQHE+DH  G+LF+D ++
Sbjct: 144 KTVRLVTDAFEARALQHEIDHCAGLLFLDRVA 175


>gi|195571951|ref|XP_002103964.1| GD20712 [Drosophila simulans]
 gi|194199891|gb|EDX13467.1| GD20712 [Drosophila simulans]
          Length = 196

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP+LR+ +   P E I+S +I  +ID M++V+   D +G+AA Q+G+  R++V++ ++  
Sbjct: 14  DPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 73

Query: 66  --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   +  RK    P+ VFINP++   S   + + EGC+S+  Y A V+R   + +R
Sbjct: 74  QEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKVRIR 133

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +  +G  A   QHE+DHLNG +++D +
Sbjct: 134 GIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKM 170


>gi|167586850|ref|ZP_02379238.1| peptide deformylase [Burkholderia ubonensis Bu]
          Length = 176

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 6/155 (3%)

Query: 11  DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68
           DP L  +++P+E+ ++  +N L+ +M E M+  +G GLAA QIGV  ++++     ++ +
Sbjct: 10  DPRLLEIAQPVERFDTPALNELVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGNNNRY 69

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P     V INPK+     D     EGCLS+P  R  V R A I     D        
Sbjct: 70  PEAPPVPETVLINPKVEFMPPDMEEGWEGCLSVPGMRGVVSRYAKIRYSGFDQFGAKIDR 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            A+G  A  +QHE DHL G L+   ++   R   T
Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFT 164


>gi|170781748|ref|YP_001710080.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156316|emb|CAQ01464.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 163

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + +F DP+L+ VS  I +I+  +  L++++L+ +      G+AA QIGV      
Sbjct: 1   MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGV------ 54

Query: 61  IDLQDHAHRKNPMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            +L+  ++   P     +NP I     +  +  EGCLS+P       R     +  +D +
Sbjct: 55  -NLRAFSYNVGPAFGYVLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVISGLDLD 113

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   I   G+LA   QHE+DHL+G++++D L + +R    K++ +
Sbjct: 114 GKPVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159


>gi|218899130|ref|YP_002447541.1| peptide deformylase [Bacillus cereus G9842]
 gi|228902480|ref|ZP_04066634.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 4222]
 gi|228966997|ref|ZP_04128035.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218546057|gb|ACK98451.1| peptide deformylase [Bacillus cereus G9842]
 gi|228792731|gb|EEM40295.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228857224|gb|EEN01730.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 4222]
          Length = 184

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYR 57
           DPILR V+  +     EK  + +  +I+         M E      GIGLAA QIGV  +
Sbjct: 12  DPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|323341737|ref|ZP_08081970.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464162|gb|EFY09355.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 190

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 98/183 (53%), Gaps = 22/183 (12%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +V+ P+P+LR    P+   ++ +  N ++NML+ +  +               G+AA QI
Sbjct: 9   IVLDPNPVLREKCEPVSFPLSEEDRNTLENMLQYVRDSRDPELAEKYNLQPANGIAAPQI 68

Query: 53  GVLYRL--VVIDLQD-HAHRKN-PMVFINPKIITFSDDFSV--YQEGCLSI-PDYRADVK 105
           GV  ++  +V+DL+D H + K      +NPKI++ S       Y EGCLSI  DY   V+
Sbjct: 69  GVAKQMTALVVDLEDKHGNVKTVEYALVNPKIVSNSVKQCALSYGEGCLSIRKDYPGLVR 128

Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           RS  I V   D     +I I A  +LA  LQHE+DHLNG+LF DH+   K   + +K  K
Sbjct: 129 RSQRIKVLAYDMITDQRIEIVAKDILAIVLQHEIDHLNGVLFYDHIDS-KDPWMAEKGLK 187

Query: 165 LVQ 167
           +++
Sbjct: 188 IIE 190


>gi|266624813|ref|ZP_06117748.1| peptide deformylase [Clostridium hathewayi DSM 13479]
 gi|288863310|gb|EFC95608.1| peptide deformylase [Clostridium hathewayi DSM 13479]
          Length = 149

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 80/143 (55%), Gaps = 7/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D ILR+  + +++++  I  ++++M + +++T +G  +AA Q+G+L RLVVID+      
Sbjct: 11  DEILRKKCKEVKEVDDRIREILNDMTDTLHATPNGAAIAANQVGILKRLVVIDMG----- 65

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              M  +NP I+  + +     EGCLS P+      R   + V+ +D N +   +     
Sbjct: 66  TGLMKLVNPVIVEQTGEQDCI-EGCLSFPEKYGRTIRPQTVIVKALDENGEVVTLTGIDE 124

Query: 130 LATCLQHELDHLNGILFIDHLSR 152
           +A C  HELDHL+G+ F+D ++ 
Sbjct: 125 MAKCFCHELDHLDGVCFVDKVTE 147


>gi|113868038|ref|YP_726527.1| peptide deformylase [Ralstonia eutropha H16]
 gi|113526814|emb|CAJ93159.1| polypeptide or peptide deformylase [Ralstonia eutropha H16]
          Length = 177

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 16/147 (10%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L +V+RP+E+ N+ ++  LI++M + M   +G GLAA QIGV  ++V+         
Sbjct: 10  DPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIFGFD----- 64

Query: 70  KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +NP           V INP +   SD+     EGCLS+P  R  V R   +     D   
Sbjct: 65  RNPRYPDAPTVPKTVLINPVLEMESDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGHDLMG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
                 A+G  A  +QHE DHL GIL+
Sbjct: 125 NRIERVAEGFHARVVQHECDHLQGILY 151


>gi|326331194|ref|ZP_08197489.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
 gi|325951015|gb|EGD43060.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
          Length = 178

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 6/151 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ 64
           +V  P  +L    + ++    + + L  +++  M  + G +GLAA Q+GV  R+  +D+ 
Sbjct: 17  VVRAPAHVLSVPGKDVDPAAPETVQLAADLIATMRVSPGCVGLAADQVGVSARIFCVDVS 76

Query: 65  DHAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR-YMDCNAQ 120
            H   +      V  N +++  S +    +EGC+S+PD   DVKR++ + VR  +    +
Sbjct: 77  THVKTRTHHGTYVLCNAEVVEASRNEKA-REGCMSVPDLTGDVKRASRLKVRGQLPVTGE 135

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  D   A CLQHE+DH NG+LFID ++
Sbjct: 136 TVEIVTDAFEARCLQHEIDHTNGLLFIDRVA 166


>gi|258542784|ref|YP_003188217.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633862|dbj|BAH99837.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636921|dbj|BAI02890.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639974|dbj|BAI05936.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643030|dbj|BAI08985.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646085|dbj|BAI12033.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649138|dbj|BAI15079.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652125|dbj|BAI18059.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655182|dbj|BAI21109.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-12]
          Length = 174

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 12  PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--IDLQDHAH 68
           P+LR+ ++ + +    DI  LI +M E +  + G+GLAA Q+ V  RL +  + L     
Sbjct: 12  PVLRQPAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLFLYSVPLARSEG 71

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +P       INP +    D+  +  EGCLS+PD R +V R   I     D + Q    
Sbjct: 72  EDDPSLPVQALINPVLKPVDDEKLLRTEGCLSLPDLRGEVPRYKRIWYAGFDPHGQKVEG 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A G  A  +QHE+DHL+GIL+   ++ + +    K++++
Sbjct: 132 MATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKELTR 171


>gi|154252515|ref|YP_001413339.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
 gi|154156465|gb|ABS63682.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
          Length = 207

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 13/148 (8%)

Query: 12  PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--------- 61
           P+LR ++RP+ +    ++  L+ +M+E M   +G GLAA Q+   +R+VV          
Sbjct: 12  PVLRGIARPVPDPTAPEVKALVRDMIETMIDANGAGLAAPQVYEPWRIVVFQAPESRLPE 71

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              + +   H     V INP++   +++     EGCLS+P  R  V R   +  R    N
Sbjct: 72  GVDETEAFDHTAPLTVLINPEVEILTEEMEKGWEGCLSVPGLRGSVPRHTELRYRGYGLN 131

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +     A G  A  +QHE DHL+GIL+
Sbjct: 132 GELIERRARGFHARVIQHECDHLDGILY 159


>gi|75762798|ref|ZP_00742622.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74489709|gb|EAO53101.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 221

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYR 57
           DPILR V+  +     EK  + +  +I+         M E      GIGLAA QIGV  +
Sbjct: 12  DPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|251771507|gb|EES52084.1| Polypeptide deformylase [Leptospirillum ferrodiazotrophum]
          Length = 175

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV   D +LR  S P++    ++  ++ ++ + + +  G+ +AA QIGV  RL V
Sbjct: 1   MSVRPLVSHRDTVLRIASEPVDPCAPEVRQVVQDLFDTLATQKGVAMAAPQIGVAMRLFV 60

Query: 61  IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            DL+    +  P    + INP I        V  EGCLS P     ++R   + V     
Sbjct: 61  FDLKRPREKGGPPTRGLLINPTIERRFGSIPVI-EGCLSFPGLDLSIRRPEGVVVSGYGL 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           + +  ++   GL A  ++HE DHL G L  D  + L
Sbjct: 120 DGKKVVLEGGGLFARMVEHETDHLEGRLLPDRQNGL 155


>gi|86741351|ref|YP_481751.1| peptide deformylase [Frankia sp. CcI3]
 gi|86568213|gb|ABD12022.1| peptide deformylase [Frankia sp. CcI3]
          Length = 230

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 42/192 (21%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+    DP+LR  +  + + ++ +  L+ +M++ MY   G+GLAA QIGV  RL V D+ 
Sbjct: 5   PIRTVGDPVLRTPTTLVTEFDTALGRLVTDMIDTMYDAPGVGLAAPQIGVGLRLFVFDV- 63

Query: 65  DHAHR----------------------KNPMVFINPKIITFSDDFSVYQE---------- 92
           D+  R                        P     P  I  S +     E          
Sbjct: 64  DYDPRDESVPRVPRVVVNPVLELGPDPGRPGETQRPGGIQRSGETQRSGETQRSGETQRS 123

Query: 93  ---------GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
                    GCLS+P       R+    VR +D   Q      +GLLA C QHE+DHL+G
Sbjct: 124 GETQQHGPEGCLSVPGLHFPTTRALAARVRGVDVTGQPVEYAGEGLLARCFQHEVDHLDG 183

Query: 144 ILFIDHLSRLKR 155
           IL++D L+   R
Sbjct: 184 ILYVDRLTGEAR 195


>gi|71907756|ref|YP_285343.1| formylmethionine deformylase [Dechloromonas aromatica RCB]
 gi|71847377|gb|AAZ46873.1| Formylmethionine deformylase [Dechloromonas aromatica RCB]
          Length = 204

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  +P++   +P+L  V++ + +   S++  LI++M + M +  G+GLAA QIG+  ++V
Sbjct: 29  MAARPILRMGEPLLFEVAKAVTEFGTSELRALIEDMFDSMEAAGGVGLAAPQIGIGLQMV 88

Query: 60  VIDLQDHAHRKN----PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +   +      +    P+ V INP I    D+  +  EGCLS+P  R +V R   I  + 
Sbjct: 89  IFGFEKSERYPDAEAVPLTVLINPLITPVGDEEELGWEGCLSVPGLRGEVPRHTRIRYQG 148

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            D          +G  A  +QHE DHL G L+   +    R   T
Sbjct: 149 FDPEGTPIDRTVEGFHARVVQHECDHLIGRLYPSRIRDFSRFGFT 193


>gi|283783275|ref|YP_003374029.1| peptide deformylase [Gardnerella vaginalis 409-05]
 gi|297243498|ref|ZP_06927430.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
 gi|283441016|gb|ADB13482.1| peptide deformylase [Gardnerella vaginalis 409-05]
 gi|296888543|gb|EFH27283.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
          Length = 162

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 9/165 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR     I +I   + +L+D++LE +      GL+A QIGV +R   
Sbjct: 1   MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP I     +     EGCLS+P      +R+ +   R +D + +
Sbjct: 61  YNINGRIG-----YILNPVIEELKGE-QYDDEGCLSVPGLWYKTRRANYARARGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             ++  +GL+A  +QHE DHL+G +++D   RL++D+  + + +L
Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLD---RLEKDVRRQALREL 156


>gi|194289796|ref|YP_002005703.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
 gi|193223631|emb|CAQ69638.1| putative POLYPEPTIDE DEFORMYLASE PROTEIN [Cupriavidus taiwanensis
           LMG 19424]
          Length = 177

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L +V+RP+E+ N+ ++  LI++M + M   +G GLAA QIGV  ++V+     +   
Sbjct: 10  DPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIFGFDRNPRY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP +   SD+     EGCLS+P  R  V R   +     D        
Sbjct: 70  PDAPTVPKTVLINPVLEMQSDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGYDLMGNRIER 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL GIL+
Sbjct: 130 VAEGFHARVVQHECDHLQGILY 151


>gi|15615221|ref|NP_243524.1| peptide deformylase [Bacillus halodurans C-125]
 gi|17432952|sp|Q9K9I9|DEF_BACHD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|10175279|dbj|BAB06377.1| formylmethionine deformylase [Bacillus halodurans C-125]
          Length = 182

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 16/157 (10%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P+LR V++P+   ++ +       MLE + ++             G+GLAA QIG+  +
Sbjct: 12  NPVLREVAKPVPVPLSDEDKQTAKRMLEFLINSQNPEIAEKYSLRPGVGLAAPQIGLSKQ 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRY 114
           ++ +   D   ++  +V  NPKII+ S + +  +  EGCLS+  + +  V R A ITV+ 
Sbjct: 72  MIAVHTTDENEKEYSLVLFNPKIISESVEMTHLEGGEGCLSVDREVQGIVPRHARITVKA 131

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           ++ N +   +   G  A   QHE+DHLNGI+F D + 
Sbjct: 132 INENNEEVRLKLKGFPAIVFQHEIDHLNGIMFYDRIE 168


>gi|47221907|emb|CAF98919.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 198

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 84/157 (53%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           DP+LR  + P++      +++  ++  +++VM   D +GL+A QIGV  R++ ++  +  
Sbjct: 27  DPVLRSRAAPVDPGAVGGAEVQKVVHTLVKVMRELDCVGLSAPQIGVPLRILALEYPEKM 86

Query: 67  ------AHRK------NPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                 A R+       P+ +F+NP++       +++QE C SI  + A V R   + V 
Sbjct: 87  LEESSPASREARGLSAQPLRIFVNPQLRVLDGRTALFQEACESISGFSATVPRYLSVEVS 146

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++ N +     A G  A  LQHE+DHL+G+L+ID +
Sbjct: 147 GLNENGEEVRWQARGWPARILQHEMDHLDGVLYIDRM 183


>gi|227502026|ref|ZP_03932075.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
 gi|227077310|gb|EEI15273.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
          Length = 207

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 21/176 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P+VI  +P+L + + P+E+    + ++  LI +M E M    G+GLAA Q+G+  R
Sbjct: 1   MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60

Query: 58  LVVIDLQD-------------HAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           L V    D                RK    NP++  +    T   D     EGCLS+P  
Sbjct: 61  LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
                R+ +  V   D N     +   G  A CLQHE  HL+G ++ D L  R KR
Sbjct: 121 GFPTGRADWARVTGKDENGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKR 176


>gi|195389911|ref|XP_002053615.1| GJ23993 [Drosophila virilis]
 gi|194151701|gb|EDW67135.1| GJ23993 [Drosophila virilis]
          Length = 234

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61
           DP+LR  +   P E ++S ++  ++D M+ V+   D +G+AA QIG+  R++ +      
Sbjct: 52  DPVLRDRAAVVPAECVDSKEVQAIVDQMVHVLRKFDCVGIAAPQIGISLRIIAMEFRRSI 111

Query: 62  --DLQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             DL +  ++   M      V INPK+   +     + EGC+S+  Y A+V+R   + + 
Sbjct: 112 KQDLSEATYKARQMSELPLTVLINPKLTVTNYTKHKHPEGCMSVRGYSAEVERYEGVKLS 171

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ++    H  +   G  A   QHE+DHL+G L+ DH+ R
Sbjct: 172 GVNRQGAHSELELSGWNARIAQHEMDHLDGKLYTDHMDR 210


>gi|195389909|ref|XP_002053614.1| GJ23992 [Drosophila virilis]
 gi|194151700|gb|EDW67134.1| GJ23992 [Drosophila virilis]
          Length = 203

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---- 63
           DP+LR  +   P E+++S +I +++D M++V+   D +G+AA Q+GV  R++V++     
Sbjct: 21  DPVLRVRAEEVPPERLDSHEINDIVDQMVKVLRHYDCVGVAAPQLGVPLRIIVMEFREGK 80

Query: 64  ------QDHAHRK-NPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                 +D+  RK +P+   VFINPKI   +D    + EGC+S+  +   V R   + V 
Sbjct: 81  RAQFTAEDYEQRKMSPLPLSVFINPKIEIITDAQHTHPEGCMSVRGFSGQVARYDRVRVT 140

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +   G  A   QHE+DHLNGI+++D +
Sbjct: 141 GIGMLGTPSELELVGWSARIAQHEMDHLNGIIYVDRM 177


>gi|167747469|ref|ZP_02419596.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662]
 gi|167652831|gb|EDR96960.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662]
          Length = 153

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 80/142 (56%), Gaps = 9/142 (6%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DPIL++  + + +++      +D++++ ++S+D G  LAA Q G+L R++VID + +   
Sbjct: 11  DPILKKKCKTVPEVDDKARQQLDDLMDTLHSSDNGAALAANQAGILRRMIVIDYEGYY-- 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD-G 128
              +  +NP I+  S       EGCLS P+      R A + V  +D N  H++ Y   G
Sbjct: 69  ---LKLVNPVIVESSGSQECV-EGCLSFPNRFGKTIRPARVKVEALDENG-HEVSYTVVG 123

Query: 129 LLATCLQHELDHLNGILFIDHL 150
            +A C  HE+DHL+G +FID +
Sbjct: 124 EMAKCFCHEIDHLDGEVFIDKV 145


>gi|187928362|ref|YP_001898849.1| peptide deformylase [Ralstonia pickettii 12J]
 gi|187725252|gb|ACD26417.1| peptide deformylase [Ralstonia pickettii 12J]
          Length = 177

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 10/144 (6%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQ 64
           D  L RV++P+E+ ++ ++  LI++M + M +  G GLAA QIGV  ++V+      D  
Sbjct: 10  DSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGFDRNDRY 69

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A      V INP I   SD+     EGCLS+P  R  V R  +  +RY   +     I
Sbjct: 70  PDAPAVPKTVLINPTIEPLSDEMEEGWEGCLSVPGLRGVVPR--YTRLRYTGFDQHGHAI 127

Query: 125 --YADGLLATCLQHELDHLNGILF 146
              A+G  A  +QHE DHL G+L+
Sbjct: 128 DRIAEGFHARVVQHECDHLQGVLY 151


>gi|294339982|emb|CAZ88345.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
           3As]
          Length = 177

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA-H 68
           DP L RV++P+ K ++ ++  LI ++ E M +  G+GLAA QIGV   +V+      A +
Sbjct: 11  DPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVVIFGFSQSARY 70

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P     V INP+I    D      EGCLS+P  R  V R   I  R MD        
Sbjct: 71  PEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRGMDPYGNPIDR 130

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            A+G  A  +QHE DHL G L+   +    R   T ++
Sbjct: 131 EAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168


>gi|295676828|ref|YP_003605352.1| peptide deformylase [Burkholderia sp. CCGE1002]
 gi|295436671|gb|ADG15841.1| peptide deformylase [Burkholderia sp. CCGE1002]
          Length = 177

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R++ P++  ++ ++  L+++M E M++ +G GLAA QIGV  ++V+     +   
Sbjct: 10  DPRLLRIAEPVDHFDTPELHRLVEDMFETMHAANGAGLAAPQIGVNLQVVIFGFGSNERY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP I   S D     EGCLS+P  R  V R + I     D        
Sbjct: 70  PDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGFDQFGNPIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151


>gi|255325809|ref|ZP_05366901.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
 gi|311740109|ref|ZP_07713942.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|255297021|gb|EET76346.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
 gi|311304805|gb|EFQ80875.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 207

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 21/176 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P+VI  + +L   ++P+E+      ++  LI +M E M + +G+GLAA Q+G+  R
Sbjct: 1   MTIRPIVIHGETVLHEPTQPVEESEISTPEMQQLIADMYETMDAANGVGLAANQVGIGKR 60

Query: 58  LVV-------------IDLQDHAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           L V             +  ++   RK    NP++  +    T   D     EGCLS+P  
Sbjct: 61  LFVYHCPDTDGPNGTELPSEEAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
                R+ +  V   D N     +   G  A CLQHE  HL+G L+ D L  R KR
Sbjct: 121 GFPTGRADWARVTGKDENGNDISVEGYGFFARCLQHETGHLDGFLYTDTLIGRYKR 176


>gi|30022062|ref|NP_833693.1| peptide deformylase [Bacillus cereus ATCC 14579]
 gi|228941135|ref|ZP_04103690.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228954250|ref|ZP_04116277.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228974067|ref|ZP_04134639.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|229047661|ref|ZP_04193247.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH676]
 gi|229071475|ref|ZP_04204696.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           F65185]
 gi|229111445|ref|ZP_04240996.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-15]
 gi|229129252|ref|ZP_04258224.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-Cer4]
 gi|229152174|ref|ZP_04280367.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1550]
 gi|229192182|ref|ZP_04319149.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           10876]
 gi|296504467|ref|YP_003666167.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|39931053|sp|Q819K2|DEF2_BACCR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|29897619|gb|AAP10894.1| Polypeptide deformylase [Bacillus cereus ATCC 14579]
 gi|228591293|gb|EEK49145.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           10876]
 gi|228631136|gb|EEK87772.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1550]
 gi|228654178|gb|EEL10044.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-Cer4]
 gi|228671827|gb|EEL27120.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-15]
 gi|228711645|gb|EEL63599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           F65185]
 gi|228723682|gb|EEL75041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH676]
 gi|228785644|gb|EEM33651.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228805378|gb|EEM51970.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228818529|gb|EEM64599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|296325519|gb|ADH08447.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|326941747|gb|AEA17643.1| peptide deformylase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 184

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57
           DPILR V+  +    S+            ++N  D  +   YS   GIGLAA QIGV  +
Sbjct: 12  DPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|239977965|ref|ZP_04700489.1| polypetide deformylase [Streptomyces albus J1074]
 gi|291449876|ref|ZP_06589266.1| polypetide deformylase [Streptomyces albus J1074]
 gi|291352825|gb|EFE79727.1| polypetide deformylase [Streptomyces albus J1074]
          Length = 206

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 9/153 (5%)

Query: 19  RPIEKINSDIMN------LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           RP  ++  D         L+D+M     + +G GLAA Q+GV  RL V D+ D    ++ 
Sbjct: 34  RPCREVTEDAFGTAGLAALVDDMFATNQAAEGAGLAANQVGVDLRLFVWDITDDWGVRHV 93

Query: 73  MVFINPKI--ITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               NP +  +  +D   V + EGCLS+P     V R     VR  D + +  +I   G 
Sbjct: 94  GHLANPVLDDVPATDRRLVEEPEGCLSVPGPYRVVPRLDRAVVRGRDKDGRPLVIEGRGY 153

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            A CLQHE DHL G L++D L+R +R    ++M
Sbjct: 154 FARCLQHETDHLRGHLYLDRLARRERKSALQEM 186


>gi|228909800|ref|ZP_04073623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 200]
 gi|228850089|gb|EEM94920.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 200]
          Length = 184

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57
           DPILR V+  +    S+            ++N  D  +   YS   GIGLAA QIGV  +
Sbjct: 12  DPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|125778496|ref|XP_001360006.1| GA16218 [Drosophila pseudoobscura pseudoobscura]
 gi|54639756|gb|EAL29158.1| GA16218 [Drosophila pseudoobscura pseudoobscura]
          Length = 196

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP+LR+++   P E I + +I  ++D M++V+   D +G+AA Q+GV  R++V++ ++  
Sbjct: 14  DPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGVPLRIIVMEFREGK 73

Query: 66  --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   +A RK    P+ VFINP++   S   + + EGC+S+  Y A V+R   + ++
Sbjct: 74  QEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGYSAQVERYDRVRIK 133

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +  +G  A   QHE+DHLNG +++D +
Sbjct: 134 GIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRM 170


>gi|228922725|ref|ZP_04086023.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228960236|ref|ZP_04121893.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228980660|ref|ZP_04140967.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis Bt407]
 gi|229081226|ref|ZP_04213735.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock4-2]
 gi|229146546|ref|ZP_04274916.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST24]
 gi|228636908|gb|EEK93368.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST24]
 gi|228702088|gb|EEL54565.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock4-2]
 gi|228779064|gb|EEM27324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis Bt407]
 gi|228799504|gb|EEM46464.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228836780|gb|EEM82123.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 181

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57
           DPILR V+  +    S+            ++N  D  +   YS   GIGLAA QIGV  +
Sbjct: 9   DPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 68

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 69  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 125

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 126 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166


>gi|225865956|ref|YP_002751334.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|229186214|ref|ZP_04313383.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC
           6E1]
 gi|225789299|gb|ACO29516.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|228597390|gb|EEK55041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC
           6E1]
          Length = 184

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           DPILR V+  +    + +  N +  M+E V+ S D           GIGLAA QIG+  +
Sbjct: 12  DPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|165760871|pdb|2OKL|A Chain A, Crystal Structure Of Peptide Deformylase 2 With Actinonin
           From Bacillus Cereus
 gi|165760872|pdb|2OKL|B Chain B, Crystal Structure Of Peptide Deformylase 2 With Actinonin
           From Bacillus Cereus
          Length = 185

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57
           DPILR V+  +    S+            ++N  D  +   YS   GIGLAA QIGV  +
Sbjct: 13  DPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 72

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 73  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 129

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 130 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 170


>gi|118479185|ref|YP_896336.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam]
 gi|196045777|ref|ZP_03113006.1| peptide deformylase [Bacillus cereus 03BB108]
 gi|118418410|gb|ABK86829.1| polypeptide deformylase [Bacillus thuringiensis str. Al Hakam]
 gi|196023217|gb|EDX61895.1| peptide deformylase [Bacillus cereus 03BB108]
          Length = 184

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           DPILR V+  +    + +  N +  M+E V+ S D           GIGLAA QIG+  +
Sbjct: 12  DPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|229031607|ref|ZP_04187606.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1271]
 gi|228729701|gb|EEL80682.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1271]
          Length = 184

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57
           DPILR V+  +    S+            ++N  D  +   YS   GIGLAA QIG+  +
Sbjct: 12  DPILRNVAEEVSMPASEEDTTALKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|194741018|ref|XP_001952986.1| GF17443 [Drosophila ananassae]
 gi|190626045|gb|EDV41569.1| GF17443 [Drosophila ananassae]
          Length = 196

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP+LR+ +   P E+I+S +I  ++D M++V+   D +G+AA QIG+  R++V++ ++  
Sbjct: 14  DPVLRQRAEEVPEERIDSPEIDQIVDRMVKVLRHYDCVGVAAPQIGIPLRIIVMEFREGK 73

Query: 66  --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   +  RK    P+ VF+NP++   S   + + EGC+S+  Y A+V R   + VR
Sbjct: 74  REQYKPEIYEERKMSTLPLAVFVNPELEIVSGQINKHPEGCMSVRGYSAEVGRFDKVRVR 133

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +  +G  A   QHE DHLNG +++D +
Sbjct: 134 GVGKLGTPSEMELEGWNARIAQHETDHLNGCIYVDRM 170


>gi|33603069|ref|NP_890629.1| peptide deformylase [Bordetella bronchiseptica RB50]
 gi|39931041|sp|Q7WG25|DEF2_BORBR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|33568700|emb|CAE34458.1| peptide deformylase [Bordetella bronchiseptica RB50]
          Length = 176

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68
           DP L RV+ P+E+ ++ ++  LID+M E M    G+GLAA QIGV  +LV+   + +  +
Sbjct: 10  DPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGFERNDRY 69

Query: 69  RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              P V      NP I   S +     EGCLS+P  R  V R   I     D   Q    
Sbjct: 70  PDAPAVPRTILCNPVIEPLSGEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPAGQRIER 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+G  A  +QHE DHL G L+   +  L +   T+
Sbjct: 130 EAEGFHARVVQHECDHLIGRLYPTRIRDLTKFGYTE 165


>gi|332305299|ref|YP_004433150.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172628|gb|AEE21882.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 183

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 8/148 (5%)

Query: 11  DPILRRVSRPI--EKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           + IL ++++P+  E I SD     +D +L  M + +G+G+AA Q+     +++I  +  +
Sbjct: 8   ETILHQIAKPVAEEAIKSDAFQAFVDELLSTMQNANGVGIAAPQVFDERAVMIIASRPSS 67

Query: 68  HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              N     P+V INPK+I  + +     EGCLS+P  R  ++R++++ + Y   +    
Sbjct: 68  RYPNAPEMEPLVLINPKVIQSAQESVKDWEGCLSVPGLRGYIRRASWVEIAYQQRDGSQV 127

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150
                G +A    HE DHL G  ++DH+
Sbjct: 128 STRLSGFVARIFLHEFDHLIGKTWLDHV 155


>gi|241562206|ref|XP_002401329.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|215499858|gb|EEC09352.1| polypeptide deformylase, putative [Ixodes scapularis]
          Length = 217

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 17/158 (10%)

Query: 11  DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61
           DP+LR  + P+  +KI S +I  +I  M +VM  T  +G++A QIG   ++ ++      
Sbjct: 38  DPVLRVRAEPVDPQKITSPEIRKVIHTMRQVMRGTYSVGISAPQIGCPLQITMMEFSNSN 97

Query: 62  -------DLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                  D+    ++  P+ VFINP +   ++   V+ EGC SI  Y A+V R   + + 
Sbjct: 98  IRMAKKEDMTARLYQAFPLKVFINPTMEVVNNQQLVFPEGCESIRGYSAEVPRYYEVKIS 157

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ++ + +H    A G  A  +QHE+DHL G L+ID ++
Sbjct: 158 GLNEHGEHHEWQARGWPARIIQHEIDHLEGCLYIDRMN 195


>gi|239927233|ref|ZP_04684186.1| peptide deformylase [Streptomyces ghanaensis ATCC 14672]
          Length = 205

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 12/156 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++   ++   ++ +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 16  PIVAAGDPVLRRGAEPFDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIAVIE 75

Query: 63  ----LQDHAHRKN---PMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
               + +   R     P  F   +NP         + + EGCLS+P Y+A V R A + +
Sbjct: 76  DPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAEVRL 135

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
              D + +       G  A  +QHE+DHL+G+L++D
Sbjct: 136 TGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLD 171


>gi|152983750|ref|YP_001349601.1| peptide deformylase [Pseudomonas aeruginosa PA7]
 gi|150958908|gb|ABR80933.1| peptide deformylase [Pseudomonas aeruginosa PA7]
          Length = 179

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 20  PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN-----PM 73
           P E   S ++  LID+M E M    G+GLAA QIGV  +LV+   +      +     P 
Sbjct: 21  PAESFGSQELQRLIDDMFETMRHVGGVGLAAPQIGVDLQLVIFGFERSERYPDAPAVPPT 80

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII--YADGLLA 131
           + +NP+I    D+     EGCLS+P  R  V R     +RY   + Q + I    +G  A
Sbjct: 81  ILLNPRITALDDEIEEGWEGCLSVPGLRGMVPRHR--RIRYQGVDPQGKPIDRSVEGFHA 138

Query: 132 TCLQHELDHLNGILFIDHLSRLKRDMITK 160
             +QHE DHL G L+   ++   +   T+
Sbjct: 139 RVVQHECDHLIGRLYPSRITDFGKFGFTE 167


>gi|296393247|ref|YP_003658131.1| peptide deformylase [Segniliparus rotundus DSM 44985]
 gi|296180394|gb|ADG97300.1| peptide deformylase [Segniliparus rotundus DSM 44985]
          Length = 198

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 19/162 (11%)

Query: 5   PLVIFPDPILRRVSRPIEKIN--------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           P+ I  DP+L R   P E +          ++++L+++M + + ++ G+GLAA QIGV  
Sbjct: 5   PIRITGDPVLHR---PTELVRLTAEGAAPPEVVSLLEDMYDTLKASHGVGLAATQIGVGL 61

Query: 57  RLVVIDLQDHAHRKN---PMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108
           RL V D  D    K        INP + T +      D    +EGCLS+P  R    R+ 
Sbjct: 62  RLFVYDCPDDTSGKRVSRKGEIINPVLQTSALPEGMPDEDEDEEGCLSVPGLRFPTGRAV 121

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +     +D   +   I  +GL A  LQHE+ HL+G L++D L
Sbjct: 122 WAKATGVDRTGKPVEIEGEGLFARMLQHEVGHLDGKLYVDML 163


>gi|221104975|ref|XP_002163732.1| PREDICTED: similar to peptide deformylase-like protein [Hydra
           magnipapillata]
          Length = 212

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 21/161 (13%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
           DP+LR+V++P++    +  D   L D ++  +   +G G+AA QIGV  +++ ++     
Sbjct: 37  DPVLRQVAKPVDLATIVTPDFKKLCDRLVSTLRRHNGCGIAAPQIGVPLQVIAVEFTGYD 96

Query: 65  -----DHAHRKN---------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
                D    K          P+ V INPKI          +EGCLS+  YRA V R+  
Sbjct: 97  LKVAMDKYGSKGVSKLQMSLFPLKVMINPKIKIIDPTMLALKEGCLSVKGYRAMVPRAKE 156

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           I V  ++ +   +   + G  +  +QHE+DHL G LF+D +
Sbjct: 157 IEVEMLNVSGNTETFRSLGWTSRIIQHEVDHLQGNLFVDTM 197


>gi|195107440|ref|XP_001998320.1| GI23900 [Drosophila mojavensis]
 gi|193914914|gb|EDW13781.1| GI23900 [Drosophila mojavensis]
          Length = 234

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 17/159 (10%)

Query: 11  DPILR-RVSR-PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR R +  P+E ++S +I  ++D M+ V+   D +G+AA QIGV  R++ ++ +   
Sbjct: 52  DPVLRDRAAEVPVECVDSKEIRAIVDRMVHVLRKYDCVGVAAPQIGVSLRIIAMEFRRGI 111

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++ P               VFINP++   +     + EGC+S+  + A+V+R   + + 
Sbjct: 112 KKELPEAMYRARQMSELPLTVFINPRLSVTNYTKHKHPEGCMSVRGFSAEVERYEAVKLS 171

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +D   +   +   G  A   QHE+DHL+G L+ DH+ R
Sbjct: 172 GLDREGEPLSLELSGWNARIAQHEMDHLDGKLYTDHMDR 210


>gi|282863154|ref|ZP_06272214.1| peptide deformylase [Streptomyces sp. ACTE]
 gi|282562136|gb|EFB67678.1| peptide deformylase [Streptomyces sp. ACTE]
          Length = 166

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 2/139 (1%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           DP+L      +      +  L+++M   MY+  G+GLAA QIGV  R+ V D  D    +
Sbjct: 6   DPVLHSPCEEVTDFGPSLARLVEDMFATMYAAHGVGLAANQIGVPLRVFVYDCPDDDEVR 65

Query: 71  NPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           +    +NP  +  +D  +V   EGCLS+P   A   R     V       +   +   G 
Sbjct: 66  HLGHLVNPVCVE-ADGITVRGPEGCLSLPGLEAGTPRFDRTVVEGRTVTGEPVRVTGTGW 124

Query: 130 LATCLQHELDHLNGILFID 148
            A CLQHE DHL+G ++ D
Sbjct: 125 FARCLQHECDHLDGTVYPD 143


>gi|29833891|ref|NP_828525.1| peptide deformylase [Streptomyces avermitilis MA-4680]
 gi|39931072|sp|Q825U9|DEF3_STRAW RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName:
           Full=Polypeptide deformylase 3
 gi|29611016|dbj|BAC75060.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
          Length = 224

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 16/159 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++   ++   ++ +   M++  G+GLAA Q+GV  R+ VI 
Sbjct: 34  PIVAAGDPVLRRGAEPYDGQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVI- 92

Query: 63  LQDHA---------HRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
            +D A           + P  F   +NP       D + + EGCLS+P ++A V R A +
Sbjct: 93  -EDPAPVPEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARPARV 151

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            +  +D + +       G  A  +QHE DHL+G+L++D 
Sbjct: 152 RLTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDR 190


>gi|229180249|ref|ZP_04307593.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           172560W]
 gi|228603458|gb|EEK60935.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           172560W]
          Length = 184

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57
           DPILR V+  +    S+            ++N  D  +   YS   GIGLAA QIGV  +
Sbjct: 12  DPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|241662938|ref|YP_002981298.1| peptide deformylase [Ralstonia pickettii 12D]
 gi|240864965|gb|ACS62626.1| peptide deformylase [Ralstonia pickettii 12D]
          Length = 177

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 10/144 (6%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQ 64
           D  L RV++P+E+ ++ ++  LI++M + M +  G GLAA QIGV  ++V+      D  
Sbjct: 10  DSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGFDRNDRY 69

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A      V INP I   S+D     EGCLS+P  R  V R  +  +RY   +     I
Sbjct: 70  PDAPAVPKTVLINPTIEPLSNDMEEGWEGCLSVPGLRGVVPR--YTRLRYTGFDQHGHAI 127

Query: 125 --YADGLLATCLQHELDHLNGILF 146
              A+G  A  +QHE DHL G+L+
Sbjct: 128 DRIAEGFHARVVQHECDHLQGVLY 151


>gi|156368959|ref|XP_001627958.1| predicted protein [Nematostella vectensis]
 gi|156214922|gb|EDO35895.1| predicted protein [Nematostella vectensis]
          Length = 192

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 22/162 (13%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+LR  +  ++     + D   ++D +++VM S DG G+AA QIGV  +++ ++     
Sbjct: 16  DPVLREPAEAVDVTFVHSPDFKAMVDRLVKVMRSHDGAGIAAPQIGVGLQVIAMEYTGKH 75

Query: 63  ---LQDHAHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
              L+D+      +           VFINPK+   +     ++E CLS+  + A V R +
Sbjct: 76  MKKLKDNGFSDKDLKRMGIAIVPLKVFINPKLRVINPKMLAFRESCLSVEGHSAVVPRMS 135

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + V  +D NA      A G  A  LQHE+DHL G L++D +
Sbjct: 136 EVEVTALDQNATPITWRAAGWPARILQHEVDHLKGNLYVDSM 177


>gi|74316798|ref|YP_314538.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259]
 gi|74056293|gb|AAZ96733.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC
           25259]
          Length = 177

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L   +R +E+   +++  L+ +M + M + +G GLAA QIGV  ++V+ ++  +A+ 
Sbjct: 11  DPRLLAPARAVERFATAELAQLVADMHDTMRALNGAGLAAPQIGVSLQVVIFEV--NANP 68

Query: 70  KNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + P        V +NP +   SD      EGCLS+P  R  V R   I  R  D   +  
Sbjct: 69  RYPDAAEVPLTVLVNPVVTPLSDATEEGWEGCLSVPGMRGLVPRHGEIHYRGFDAAGRAL 128

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                G  A  +QHE+DHLNGIL+   +  L+    T  +     L+D
Sbjct: 129 ERRVSGFHARVVQHEVDHLNGILYPMRIPDLRNFGFTDTLFPGQTLQD 176


>gi|70731936|ref|YP_261678.1| peptide deformylase [Pseudomonas fluorescens Pf-5]
 gi|68346235|gb|AAY93841.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5]
          Length = 179

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 14  LRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           L R++ P+  E  +S ++  LID+M + M S  G+GLAA QIGV  +LV+   + H+ R 
Sbjct: 13  LLRIAPPVPPEMFDSPELWELIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFE-HSERY 71

Query: 71  NP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                    + INP I   S       EGCLS+P  R  V+R   I     D   +  + 
Sbjct: 72  PEAEAVPQTILINPLITPLSPVLEEGWEGCLSVPGLRGAVQRYQHIRYEGFDPRGEPIVR 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A G  A  +QHE DHL G L+   +S   +   T+
Sbjct: 132 VASGFHARVVQHECDHLIGRLYPSRISDFSKFGFTE 167


>gi|30264046|ref|NP_846423.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47529482|ref|YP_020831.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186882|ref|YP_030134.1| peptide deformylase [Bacillus anthracis str. Sterne]
 gi|49478480|ref|YP_038035.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65321366|ref|ZP_00394325.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis
           str. A2012]
 gi|165872897|ref|ZP_02217522.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167633479|ref|ZP_02391803.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|167639508|ref|ZP_02397779.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|170687132|ref|ZP_02878350.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|170705828|ref|ZP_02896291.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|177655203|ref|ZP_02936812.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190566155|ref|ZP_03019074.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|196035869|ref|ZP_03103271.1| peptide deformylase [Bacillus cereus W]
 gi|196038641|ref|ZP_03105949.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|218905105|ref|YP_002452939.1| peptide deformylase [Bacillus cereus AH820]
 gi|227816748|ref|YP_002816757.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|228916611|ref|ZP_04080177.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228935289|ref|ZP_04098115.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947693|ref|ZP_04109983.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229093023|ref|ZP_04224154.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-42]
 gi|229603739|ref|YP_002868274.1| peptide deformylase [Bacillus anthracis str. A0248]
 gi|254683741|ref|ZP_05147601.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066]
 gi|254721576|ref|ZP_05183365.1| peptide deformylase [Bacillus anthracis str. A1055]
 gi|254736086|ref|ZP_05193792.1| peptide deformylase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743977|ref|ZP_05201660.1| peptide deformylase [Bacillus anthracis str. Kruger B]
 gi|254754244|ref|ZP_05206279.1| peptide deformylase [Bacillus anthracis str. Vollum]
 gi|254758065|ref|ZP_05210092.1| peptide deformylase [Bacillus anthracis str. Australia 94]
 gi|301055465|ref|YP_003793676.1| peptide deformylase [Bacillus anthracis CI]
 gi|39931064|sp|Q81MQ9|DEF2_BACAN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|30258691|gb|AAP27909.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47504630|gb|AAT33306.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180809|gb|AAT56185.1| polypeptide deformylase [Bacillus anthracis str. Sterne]
 gi|49330036|gb|AAT60682.1| polypeptide deformylase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|164711384|gb|EDR16936.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167512567|gb|EDR87942.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|167530885|gb|EDR93572.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|170129368|gb|EDS98232.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|170668749|gb|EDT19494.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|172080253|gb|EDT65344.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190563074|gb|EDV17040.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|195991518|gb|EDX55484.1| peptide deformylase [Bacillus cereus W]
 gi|196030364|gb|EDX68963.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|218537238|gb|ACK89636.1| peptide deformylase [Bacillus cereus AH820]
 gi|227006107|gb|ACP15850.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|228690394|gb|EEL44180.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-42]
 gi|228812213|gb|EEM58544.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824454|gb|EEM70260.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228843190|gb|EEM88272.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268147|gb|ACQ49784.1| peptide deformylase [Bacillus anthracis str. A0248]
 gi|300377634|gb|ADK06538.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI]
          Length = 184

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           DPILR V+  +    + +  N +  M+E V+ S D           GIGLAA QIG+  +
Sbjct: 12  DPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|309782141|ref|ZP_07676871.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
 gi|308919207|gb|EFP64874.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
          Length = 177

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 10/144 (6%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQ 64
           D  L RV++P+E+ ++ ++  LI++M + M +  G GLAA QIGV  ++V+      D  
Sbjct: 10  DSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGFDRNDRY 69

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A      V INP +   SD+     EGCLS+P  R  V R  +  +RY   +     I
Sbjct: 70  PDAPAVPKTVLINPTVEPLSDEMEEGWEGCLSVPGLRGVVPR--YTRLRYTGFDQHGHAI 127

Query: 125 --YADGLLATCLQHELDHLNGILF 146
              A+G  A  +QHE DHL G+L+
Sbjct: 128 DRIAEGFHARVVQHECDHLQGVLY 151


>gi|260219440|emb|CBA26285.1| Peptide deformylase 2 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 179

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 7/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L RV++P+ + +SD ++L + +ML+ M + +G GLAA QIGV  +LV+    +   R
Sbjct: 11  DPRLLRVAQPVTEFDSDALHLLVTDMLDTMRAANGAGLAAPQIGVDLQLVIFGGNERNPR 70

Query: 70  K------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P V  NP I    D+     EGCLS+P  R  V R + I     D       
Sbjct: 71  YPDRPIVPPTVLCNPVITPLGDEEENDWEGCLSVPGLRGVVPRWSRIRYTGFDQYGDAID 130

Query: 124 IYADGLLATCLQHELDHLNGILF 146
              DG  A  +QHE DH+ G L+
Sbjct: 131 RTVDGFHARVVQHECDHVWGKLY 153


>gi|23335172|ref|ZP_00120410.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum
           DJO10A]
 gi|23466058|ref|NP_696661.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189439265|ref|YP_001954346.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|213691939|ref|YP_002322525.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|227547307|ref|ZP_03977356.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621368|ref|ZP_04664399.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296454248|ref|YP_003661391.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
 gi|317482866|ref|ZP_07941874.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689310|ref|YP_004209044.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis
           157F]
 gi|322691322|ref|YP_004220892.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|39931156|sp|Q8G487|DEF2_BIFLO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|23326783|gb|AAN25297.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189427700|gb|ACD97848.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|213523400|gb|ACJ52147.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|227212266|gb|EEI80162.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239515829|gb|EEQ55696.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296183679|gb|ADH00561.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
 gi|316915711|gb|EFV37125.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456178|dbj|BAJ66800.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320458046|dbj|BAJ68667.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320460646|dbj|BAJ71266.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 162

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++LE +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP ++          EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNIDGKVG-----YVLNP-VLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             ++   GL+   LQHE DHL+G +++D L + +R
Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEER 149


>gi|311257108|ref|XP_003126954.1| PREDICTED: peptide deformylase, mitochondrial-like [Sus scrofa]
          Length = 249

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP LR V+ P+E       ++  L+  +++VM     +GL+A Q+GV  +++ ++  D  
Sbjct: 78  DPALRAVAAPVEPAQLAGPELQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLALEFPDAL 137

Query: 66  -HA--------HRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            HA         +  P    VF+NP +         + EGC S+  + A V R   + + 
Sbjct: 138 FHACAPRLREIRQMEPFPLHVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 197

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D   +  +  A G  A  +QHE+DHL G+LFID +
Sbjct: 198 GLDPRGEPVVWQASGWAARIIQHEMDHLQGLLFIDKM 234


>gi|256789557|ref|ZP_05527988.1| peptide deformylase [Streptomyces lividans TK24]
          Length = 222

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 13/173 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P +   +  +    ++ +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 29  PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 88

Query: 63  ----LQDH---AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
               + D    A  + P  F   +NP         + + EGCLS+P ++A V R A + +
Sbjct: 89  DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 148

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           R  D + +       G  A  +QHE DHL+G L++D  + L+       M++L
Sbjct: 149 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR-AELRSLASNAAMAEL 200


>gi|291435575|ref|ZP_06574965.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291338470|gb|EFE65426.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
          Length = 214

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 12/156 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++   ++   ++ +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 25  PIVAAGDPVLRRGAEPFDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIAVIE 84

Query: 63  ----LQDHAHRKN---PMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
               + +   R     P  F   +NP         + + EGCLS+P Y+A V R A + +
Sbjct: 85  DPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAEVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
              D + +       G  A  +QHE+DHL+G+L++D
Sbjct: 145 TGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLD 180


>gi|218231086|ref|YP_002368775.1| peptide deformylase [Bacillus cereus B4264]
 gi|218159043|gb|ACK59035.1| peptide deformylase [Bacillus cereus B4264]
          Length = 184

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57
           DPILR V+  +    S+            ++N  D  +   YS   GIGLAA QIGV  +
Sbjct: 12  DPILRNVAEDVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|47565850|ref|ZP_00236889.1| polypeptide deformylase [Bacillus cereus G9241]
 gi|47557130|gb|EAL15459.1| polypeptide deformylase [Bacillus cereus G9241]
          Length = 184

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           DPILR V+  +    + +  N +  M+E V+ S D           GIGLAA QIG+  +
Sbjct: 12  DPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|298346549|ref|YP_003719236.1| peptide deformylase [Mobiluncus curtisii ATCC 43063]
 gi|304389733|ref|ZP_07371692.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315655106|ref|ZP_07908008.1| peptide deformylase [Mobiluncus curtisii ATCC 51333]
 gi|315657036|ref|ZP_07909921.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|298236610|gb|ADI67742.1| peptide deformylase [Mobiluncus curtisii ATCC 43063]
 gi|304326909|gb|EFL94148.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315490587|gb|EFU80210.1| peptide deformylase [Mobiluncus curtisii ATCC 51333]
 gi|315492428|gb|EFU82034.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 164

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 7/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + + +  DP+LR     I +  +  +  L++++LE +      GLAA QIGV  R  
Sbjct: 1   MAFREIRVVGDPVLRTPCDWITDPRDPGVKQLVEDLLENVDEDGRAGLAANQIGVSLRAF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
             ++            +NPK++  S+D +    EGCLS+P      KR+ +  V  +D +
Sbjct: 61  SWNIDGEIG-----YVLNPKLVAMSEDEYQDGDEGCLSVPGLFYPTKRAWYARVEGIDLD 115

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +  ++  + L+  CLQHE DHL G L++D L R  R    +++ K+
Sbjct: 116 GKPLVVEGEELMGRCLQHECDHLEGHLYLDKLERKYRKEALQQIRKM 162


>gi|330817443|ref|YP_004361148.1| Peptide deformylase [Burkholderia gladioli BSR3]
 gi|327369836|gb|AEA61192.1| Peptide deformylase [Burkholderia gladioli BSR3]
          Length = 177

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L  V++P+E  ++ ++  L+ +M E M+  +G GLAA QIGV  +L++    ++A  
Sbjct: 10  DPRLLEVAKPVEAFDTPELHELVADMFETMHHANGAGLAAPQIGVGLQLIIFGFGNNARY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP +     D     EGCLS+P  R  V R + +     D   +    
Sbjct: 70  PDAPPVPETVLINPSVEYLPPDMEEGWEGCLSVPGMRGVVSRYSKVHYSGFDQYGKRIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 IAEGFHARVVQHEYDHLIGKLY 151


>gi|121594637|ref|YP_986533.1| peptide deformylase [Acidovorax sp. JS42]
 gi|222110774|ref|YP_002553038.1| peptide deformylase [Acidovorax ebreus TPSY]
 gi|120606717|gb|ABM42457.1| peptide deformylase [Acidovorax sp. JS42]
 gi|221730218|gb|ACM33038.1| peptide deformylase [Acidovorax ebreus TPSY]
          Length = 179

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 7/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L RV++P+   ++  ++ L+++M E M + +G GLAA QIG  +++V+    +   R
Sbjct: 11  DPRLLRVAQPVTAFDTPALHQLVNDMRETMQAVNGAGLAAPQIGEDWQVVIFGSGERNPR 70

Query: 70  KN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P V INP I     D     EGCLS+P  R  V R A I  R +D       
Sbjct: 71  YPDRPIVPPTVLINPVITPLGADEEDDWEGCLSVPGLRGKVPRFARIHYRGVDLLGAPID 130

Query: 124 IYADGLLATCLQHELDHLNGILF 146
             A+G  A  +QHE DHL G L+
Sbjct: 131 RVAEGFHARVVQHECDHLIGKLY 153


>gi|21219403|ref|NP_625182.1| peptide deformylase [Streptomyces coelicolor A3(2)]
 gi|23396576|sp|Q9RD27|DEF1_STRCO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|6562865|emb|CAB62674.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
          Length = 218

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 13/173 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P +   +  +    ++ +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 25  PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84

Query: 63  ----LQDH---AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
               + D    A  + P  F   +NP         + + EGCLS+P ++A V R A + +
Sbjct: 85  DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           R  D + +       G  A  +QHE DHL+G L++D  + L+       M++L
Sbjct: 145 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR-AELRSLASNAAMAEL 196


>gi|228929021|ref|ZP_04092053.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229123495|ref|ZP_04252694.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           95/8201]
 gi|228659982|gb|EEL15623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           95/8201]
 gi|228830828|gb|EEM76433.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 181

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           DPILR V+  +    + +  N +  M+E V+ S D           GIGLAA QIG+  +
Sbjct: 9   DPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 68

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 69  MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 125

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 126 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166


>gi|148273059|ref|YP_001222620.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830989|emb|CAN01934.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 163

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + +F DP+L+ VS  I +I+  +  L++++L+ +      G+AA QIGV      
Sbjct: 1   MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGV------ 54

Query: 61  IDLQDHAHRKNPMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            +L+  ++   P     +NP I     +  +  EGCLS+P       R     +  +D  
Sbjct: 55  -NLRAFSYNVGPAFGYVLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVITGIDLE 113

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   I   G+LA   QHE+DHL+G++++D L + +R    K++ +
Sbjct: 114 GKPVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159


>gi|289773445|ref|ZP_06532823.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|289703644|gb|EFD71073.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 218

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 13/173 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P +   +  +    ++ +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 25  PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84

Query: 63  ----LQDH---AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
               + D    A  + P  F   +NP         + + EGCLS+P ++A V R A + +
Sbjct: 85  DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           R  D + +       G  A  +QHE DHL+G L++D  + L+       M++L
Sbjct: 145 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR-AELRSLASNAAMAEL 196


>gi|229157552|ref|ZP_04285629.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           4342]
 gi|228626002|gb|EEK82752.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           4342]
          Length = 181

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           DPILR V+  +    + +  N +  M+E V+ S D           GIGLAA QIG+  +
Sbjct: 9   DPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 68

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 69  MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 125

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 126 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166


>gi|152966929|ref|YP_001362713.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
 gi|151361446|gb|ABS04449.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
          Length = 181

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M +  G GLAA Q+GV  R+  
Sbjct: 1   MAIQPIRLFGDPVLRQRADEVTTFDKELRQLVKDLEDTMLAAPGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               D   H  NP       ++  S++     EGCLS P   AD +RS  +  +  D + 
Sbjct: 61  YHADDEIGHLVNP-------VLDLSEECQEGDEGCLSFPGIVADTRRSLHVVAKGFDMHG 113

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +   I      A  +QHE DHL+G+LFID L + +R +  K + +   L
Sbjct: 114 EPITITGSEFKARAIQHETDHLDGVLFIDRLDKAQRKLALKAVREAEWL 162


>gi|229174643|ref|ZP_04302171.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3]
 gi|228608845|gb|EEK66139.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3]
          Length = 184

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57
           DPILR V+  +    S+            ++N  D  +   YS   GIGLAA QIG+  +
Sbjct: 12  DPILRNVAEEVSIPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|167462507|ref|ZP_02327596.1| Def2 [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383825|ref|ZP_08057572.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151641|gb|EFX44714.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 195

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57
           DPILR V++P+    S+            + N  D  L   Y    G+GL+A QIG+  R
Sbjct: 20  DPILREVTQPVHVPPSEEDRETLCCMLQFLKNSQDPELAEKYQLRGGVGLSANQIGLNKR 79

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           +    LQD   + +  + +NP+II+ S   +     EGCLS+    P +   V R   I 
Sbjct: 80  MFAAYLQDEQGKTHEYMVVNPQIISHSAAMTYLDQGEGCLSVDRPVPGF---VPRYERIK 136

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+  D N +  ++   G ++   QHE+DHLNGI+F DH+ +
Sbjct: 137 VKAYDINGEEVVLRLKGYVSIVFQHEMDHLNGIMFYDHIDK 177


>gi|145220780|ref|YP_001131458.1| peptide deformylase [Mycobacterium gilvum PYR-GCK]
 gi|315442266|ref|YP_004075145.1| peptide deformylase [Mycobacterium sp. Spyr1]
 gi|189083073|sp|A4T2T4|DEF_MYCGI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145213266|gb|ABP42670.1| peptide deformylase [Mycobacterium gilvum PYR-GCK]
 gi|315260569|gb|ADT97310.1| peptide deformylase [Mycobacterium sp. Spyr1]
          Length = 197

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +P+ I  DP+L   + PI       + +D+ +LI ++ + M +  G+GLAA QIGV 
Sbjct: 1   MAVRPICIVGDPVLHTATEPIPVGPDGSLPADLADLITDLYDTMDAAHGVGLAANQIGVN 60

Query: 56  YRLVVIDLQDHAHR--KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   +  +   V +NP + T        D     EGCLS+P       R+ 
Sbjct: 61  KRVFVYDCADARKKTVRRRGVVVNPVLETSEVPETMPDPEDDDEGCLSVPGESFPTGRAD 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     I    L A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGTPITIEGTDLFARMLQHETGHLDGFLYLDSL 162


>gi|124359186|gb|ABD28402.2| Formylmethionine deformylase [Medicago truncatula]
          Length = 266

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+L   +R ++  +INSD I  +ID M+ VM +  GI L+A +IG+  R++V++     
Sbjct: 72  DPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLEEPKEN 131

Query: 63  LQDHAHRKNP---------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           L ++    N          +V +NPK+   S+   ++ EGCLS+  ++A V+R   + V 
Sbjct: 132 LYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYLDVEVE 191

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             D   +   I A G  A  LQHE DHL+G L++D +
Sbjct: 192 GFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKM 228


>gi|284990128|ref|YP_003408682.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
 gi|284063373|gb|ADB74311.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
          Length = 161

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+    DP+LR  +  +   + ++  L+ ++ + +      G+AA QIGV  R   
Sbjct: 1   MTIRPIRELGDPVLRTPADEVRSFDKELAALVRDLEDTVADPGRAGVAAPQIGVGLRAFS 60

Query: 61  IDLQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++     H       +NP+I+  S++     EGCLSIP   A   R+    V   D + 
Sbjct: 61  YNVDGRIGH------VVNPRIVELSEETQDGDEGCLSIPGLWAPTVRAMHAVVEGFDVHG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +   +   GL+A  LQHE+DHL+G +F+D L+
Sbjct: 115 EPVRLEGTGLMARALQHEVDHLDGKVFLDRLT 146


>gi|17546118|ref|NP_519520.1| peptide deformylase [Ralstonia solanacearum GMI1000]
 gi|23396561|sp|Q8XZJ6|DEF2_RALSO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|17428414|emb|CAD15101.1| putative peptide deformylase 2 (pdf 2) (polypeptide deformylase2)
           protein [Ralstonia solanacearum GMI1000]
          Length = 177

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 10/151 (6%)

Query: 4   KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           +P++   D  L RV++P+++  + ++  LI++M + M +  G GLAA QIGV  ++V+  
Sbjct: 3   RPILKMGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFG 62

Query: 62  ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               D    A      V INP I   SD      EGCLS+P  R  V R  +  +RY   
Sbjct: 63  FDRNDRYPDAPAVPKTVLINPTIEPLSDAMEDGWEGCLSVPGLRGVVPR--YTRLRYTGY 120

Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILF 146
           +     I   A+G  A  +QHE DHL GIL+
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILY 151


>gi|15828039|ref|NP_302302.1| peptide deformylase [Mycobacterium leprae TN]
 gi|221230516|ref|YP_002503932.1| peptide deformylase [Mycobacterium leprae Br4923]
 gi|17432941|sp|Q9CBI2|DEF_MYCLE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767596|sp|B8ZSF6|DEF_MYCLB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|13093592|emb|CAC30884.1| polypeptide deformylase [Mycobacterium leprae]
 gi|219933623|emb|CAR72026.1| polypeptide deformylase [Mycobacterium leprae Br4923]
          Length = 197

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 16/164 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P++      + +++  LI  M + M +  G+GLAA QIG  
Sbjct: 1   MAIAPIRIVGDPVLHTPTAPVQVAADGSLPANLNGLISTMYDTMDAAHGVGLAANQIGYG 60

Query: 56  YRLVVIDLQD----HAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKR 106
            R+ V D  +     A R+   V INP     +I     D     EGCLS+P     + R
Sbjct: 61  LRVFVYDCAEDCRQTARRRG--VVINPILETSEIPETMPDPDTDNEGCLSVPGESFPIGR 118

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           + +  V  +D +         GL A  LQHE  HL+G L++D+L
Sbjct: 119 AQWARVTGLDADGNPVTTEGTGLFARMLQHETGHLDGFLYLDYL 162


>gi|223043772|ref|ZP_03613815.1| polypeptide deformylase [Staphylococcus capitis SK14]
 gi|222442869|gb|EEE48971.1| polypeptide deformylase [Staphylococcus capitis SK14]
          Length = 162

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    P+L++ S+ + + +  + +L+ ++ + +Y  +   ++A QIGV  R+ +
Sbjct: 1   MTVKKLVKSTHPLLKKESKTVNQYDDQLKSLLKDLEDTLYEEEAAAISAPQIGVNQRVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  INP I ++SD+     EG +S+P+   +V RS  I ++  D N  
Sbjct: 61  IDME----LEGLLQLINPVIKSYSDEEITDLEGSVSLPNVFGEVTRSKMIVLQCNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DHLNGILF D  +R+
Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTDKANRI 149


>gi|329912478|ref|ZP_08275758.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545607|gb|EGF30770.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
          Length = 178

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 10/153 (6%)

Query: 11  DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           DP L RV+ P+ + ++  M L I +M E M++ +G GLAA QIGV  +LV+   +++   
Sbjct: 11  DPRLLRVAEPVTEFDTPAMRLLIADMFETMHAVNGAGLAAPQIGVNLQLVIYGSRNNVRY 70

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A      + INP +   SD+     EGCLS+P  R  V R  +  + Y   +    +I
Sbjct: 71  PEAPEVPETILINPVLTPLSDELVENWEGCLSVPGLRGVVPR--WQALHYEGVDQFGAVI 128

Query: 125 Y--ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
               DG  A  +QHE DHL G+L+   ++   R
Sbjct: 129 SRDVDGFHARVVQHECDHLIGVLYPMRVTDFSR 161


>gi|255003823|ref|NP_080789.2| peptide deformylase-like protein [Mus musculus]
          Length = 231

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR V+ P+E       ++  L+  M++VM     +GL+A Q+GV  +++ ++  D  
Sbjct: 60  DPVLRVVAAPVEPEQLAGPELQRLVGRMVQVMRRRGCVGLSAPQLGVPLQVLALEFPDKL 119

Query: 68  HRK-----------NPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            R             P    V +NP +         + EGC S+  + A V R   + + 
Sbjct: 120 LRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQIS 179

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D   +  +  A G  A  +QHE+DHL G LFID +
Sbjct: 180 GLDPKGEPVVWSASGWTARIIQHEMDHLQGCLFIDKM 216


>gi|291456210|ref|ZP_06595600.1| peptide deformylase [Bifidobacterium breve DSM 20213]
 gi|291381487|gb|EFE89005.1| peptide deformylase [Bifidobacterium breve DSM 20213]
          Length = 217

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQQTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P         V INPK     +  + + EGCLS   Y+A  KR   IT  +
Sbjct: 90  DHVRDDEDDPREIAEFPFHVIINPKYTPVGEKTTSFFEGCLSFDGYQAVRKRWLDITAEW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            D + +H      G  A   QHE DHL+G L+ID
Sbjct: 150 DDEDGKHHSEQLHGWPARIFQHETDHLSGELYID 183


>gi|333023046|ref|ZP_08451110.1| putative peptide deformylase [Streptomyces sp. Tu6071]
 gi|332742898|gb|EGJ73339.1| putative peptide deformylase [Streptomyces sp. Tu6071]
          Length = 214

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 18/171 (10%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  + P E    + +   L+  M   M    G+GLAA QIGV  RL V  
Sbjct: 25  PIVAAGDPVLRTPAAPYEGQLPEALLSRLLAAMRRTMREAPGVGLAAPQIGVPLRLAV-- 82

Query: 63  LQDHAHRKNPM------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           L+D A     +            V +NP      +  + + EGCLS+P ++A V R A +
Sbjct: 83  LEDPATVPEEVRRVREREPLPYRVLVNPVCEGVGERRAAFYEGCLSVPGWQAVVARHAVV 142

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            +R  D + +       G  A  +QHE DHL+G L++D    L R + + +
Sbjct: 143 RLRAEDEHGRGLDEEVRGWPARIVQHETDHLDGTLYVDRA--LPRSLTSNE 191


>gi|322690616|ref|YP_004220186.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455472|dbj|BAJ66094.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 217

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P         V INP     SD  + + EGCLS   Y+A  KR   IT  +
Sbjct: 90  DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            D + +H      G  A   QHE DHL+G L+ID
Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYID 183


>gi|225387512|ref|ZP_03757276.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme
           DSM 15981]
 gi|225046442|gb|EEG56688.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme
           DSM 15981]
          Length = 155

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 7/139 (5%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAV-QIGVLYRLVVIDLQDHAHR 69
           D  LR+  + ++ ++  +  L+D+M++ +++T+G    A  Q+G+L RLVVID     + 
Sbjct: 11  DEALRKRCKEVKNVDERVRALLDDMMDTLHATEGAAALAANQVGILKRLVVID-----YC 65

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +  +NP +I   D      EGCLS P   A   R   +TV+ +D N +  ++  +G 
Sbjct: 66  GCVLKLVNP-VIVGRDGVQECLEGCLSFPGRIATTIRPQSVTVQALDENGKEVLLTGEGE 124

Query: 130 LATCLQHELDHLNGILFID 148
           +A C  HEL+HL+G +F+D
Sbjct: 125 MAKCYCHELEHLDGEVFLD 143


>gi|257068838|ref|YP_003155093.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
 gi|256559656|gb|ACU85503.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
          Length = 163

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 9/170 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR    PI  I      L+ ++ + +      G+AA QIGV  R   
Sbjct: 1   MTIRPIRIVGDPVLRTPCDPIRTITEGTRTLVRDLKDTVDDEGRAGVAANQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               +          +NP I+  S++     EGCLS+P       RSA+     MD   +
Sbjct: 61  WHFVETGEIG---CILNPVIVELSEELQHDDEGCLSVPGLFYPRTRSAYARCVGMDVEGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +  +GL+A  +QHE+ HL+G L+ID L R      + K   L Q+R+
Sbjct: 118 EIELAGEGLVARLIQHEVGHLDGELYIDGLER------SVKKRALRQIRE 161


>gi|91784124|ref|YP_559330.1| peptide deformylase [Burkholderia xenovorans LB400]
 gi|296158911|ref|ZP_06841739.1| peptide deformylase [Burkholderia sp. Ch1-1]
 gi|91688078|gb|ABE31278.1| Formylmethionine deformylase [Burkholderia xenovorans LB400]
 gi|295890786|gb|EFG70576.1| peptide deformylase [Burkholderia sp. Ch1-1]
          Length = 177

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R++ P++  ++ ++  L+ +M E M+  +G GLAA QIGV  ++V+     +   
Sbjct: 10  DPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVIFGFGHNERY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP I   S D     EGCLS+P  R  V R + I     D   +    
Sbjct: 70  PDAPPVPETVLINPTITPVSQDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151


>gi|23335362|ref|ZP_00120599.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum
           DJO10A]
 gi|23465752|ref|NP_696355.1| peptide deformylase [Bifidobacterium longum NCC2705]
 gi|189439807|ref|YP_001954888.1| peptide deformylase [Bifidobacterium longum DJO10A]
 gi|227546365|ref|ZP_03976414.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239622367|ref|ZP_04665398.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133213|ref|YP_004000552.1| def2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688630|ref|YP_004208364.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
 gi|39931158|sp|Q8G534|DEF1_BIFLO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|23326438|gb|AAN24991.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189428242|gb|ACD98390.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|227213346|gb|EEI81218.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239514364|gb|EEQ54231.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517274|emb|CBK70890.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           longum F8]
 gi|311772414|gb|ADQ01902.1| Def2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320459966|dbj|BAJ70586.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
          Length = 217

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P         V INP     SD  + + EGCLS   Y+A  KR   IT  +
Sbjct: 90  DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            D + +H      G  A   QHE DHL+G L+ID
Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYID 183


>gi|312132641|ref|YP_003999980.1| def1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773592|gb|ADQ03080.1| Def1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 162

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++LE +      GL+A QIGV  R   
Sbjct: 1   MSIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP ++          EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNIDGKVG-----YVLNP-VLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             ++   GL+   LQHE DHL+G +++D L + +R
Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEER 149


>gi|213692889|ref|YP_002323475.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524350|gb|ACJ53097.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320459064|dbj|BAJ69685.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 217

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P         V INP     SD  + + EGCLS   Y+A  KR   IT  +
Sbjct: 90  DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            D + +H      G  A   QHE DHL+G L+ID
Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYID 183


>gi|317471201|ref|ZP_07930569.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
 gi|316901307|gb|EFV23253.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
          Length = 153

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 9/140 (6%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DPIL++  + + +++      +D++++ ++S + G  LAA Q G+L R++VID     H 
Sbjct: 11  DPILKKKCKTVPEVDDKARQQLDDLMDTLHSAENGAALAANQAGILRRMIVID-----HE 65

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD-G 128
              +  +NP I+  S       EGCLS P+      R A +TV  +D +  H++ Y   G
Sbjct: 66  GYYLKLVNPVIVESSGSQECV-EGCLSFPNRFGKTIRPAKVTVEALDEHG-HEVSYTVVG 123

Query: 129 LLATCLQHELDHLNGILFID 148
            +A C  HE+DHL+G +FID
Sbjct: 124 EMAKCFCHEIDHLDGEVFID 143


>gi|291543910|emb|CBL17019.1| peptide deformylase [Ruminococcus sp. 18P13]
          Length = 153

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +  R +E+ +  +  LID+M E +    G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNIVTSEDPILSKPCRTVEEFDDKLGQLIDDMFETLEKAKGLGLAAPQVGILKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  +NP I+  S       EGCLS P+    V R     +R  D + +
Sbjct: 61  MDVGD-----GRVEAVNPVILKESGKQRDV-EGCLSCPNQWGYVTRPNKCRLRAYDRHGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
              +    L   C  HE DHL+G+LF
Sbjct: 115 EFTMDLKELGCRCACHETDHLDGLLF 140


>gi|118470670|ref|YP_885236.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155]
 gi|158512462|sp|A0QQP8|DEF_MYCS2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|118171957|gb|ABK72853.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155]
          Length = 197

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 14/163 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+       +  D+  LI +M + M + +G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTEPVPVGPDGSLPDDLPALIQDMFDTMDAANGVGLAANQIGVA 60

Query: 56  YRLVVID---LQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRS 107
            RL V D    +    R+   V INP + T        D    +EGCLS+P       R+
Sbjct: 61  KRLFVYDCAPTRGQTTRRR-GVVINPVLETSEVPETMPDPDEDEEGCLSVPGENFPTGRA 119

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +  V  +D +     +  + L A  LQHE  HL+G L++D L
Sbjct: 120 DWARVTGLDADGSPITLEGEDLFARMLQHETGHLDGFLYLDRL 162


>gi|297538577|ref|YP_003674346.1| peptide deformylase [Methylotenera sp. 301]
 gi|297257924|gb|ADI29769.1| peptide deformylase [Methylotenera sp. 301]
          Length = 182

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 15/167 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   +P L   + P+EK ++ ++ +LI ++ + M + +G G+AA QIG   R+V
Sbjct: 1   MAVKPVLRMGEPCLLLKAAPVEKFDTPELHSLIQDLEDTMQAMNGAGIAAPQIGESLRVV 60

Query: 60  VIDLQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +   +     KNP           V INP I    DD     EGCLS+P  R  V R  +
Sbjct: 61  IFGQKSSDENKNPRYPDADAVPYTVLINPVITPIGDDVEDGWEGCLSVPGMRGIVPR--Y 118

Query: 110 ITVRYMDCNAQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLK 154
           + + Y   +     I     G  A  +QHE DHL+G+L+   +  LK
Sbjct: 119 LRLHYAGFDQYGNPIDRLVSGFHARVVQHECDHLDGVLYPMRIKNLK 165


>gi|145342766|ref|XP_001416260.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus
           CCE9901]
 gi|144576485|gb|ABO94553.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus
           CCE9901]
          Length = 274

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 18/157 (11%)

Query: 12  PILRRVSRPIE--KINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-----L 63
           P LR V+R ++  +I+S +I  LI  ML V  +  G+GLAA Q+G   R+VV++     +
Sbjct: 61  PALRDVARAVDVDEIDSTEIQELIAEMLRVCRAR-GVGLAAPQLGARRRVVVLEDTTEGM 119

Query: 64  QDHAHRKNPM---------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D       M         V +NP +    D  + + EGCLS+  YRA V+R   +  R 
Sbjct: 120 SDETSEALAMKRREAFRAKVIVNPTLTPIGDASAAFFEGCLSVAGYRAVVRRHLRVRCRG 179

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + +     A G  A  LQHE+DHL+G+L+ D + 
Sbjct: 180 YGGDGKPVDFEAVGWEARILQHEVDHLDGVLYTDRME 216


>gi|195499829|ref|XP_002097113.1| GE24678 [Drosophila yakuba]
 gi|194183214|gb|EDW96825.1| GE24678 [Drosophila yakuba]
          Length = 238

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR+ +   P E ++S ++  +++ M++V+   D +G+AA QIGV  R++ ++ +   
Sbjct: 56  DPVLRQQAAVVPKEHLDSPELKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRI 115

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++ P               VFINP +   +     + EGC+S+  Y A+V+R   + + 
Sbjct: 116 RKELPEAVYQTRQMSELPLTVFINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGVKLT 175

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 176 GLDQQGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|159899991|ref|YP_001546238.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893030|gb|ABX06110.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 175

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 11/170 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54
           M   PL+   +P+LR+ + P  +  + ++  ++++M + +         G G+AA QIGV
Sbjct: 1   MAVVPLIELGNPLLRQPATPFADPTSPEVARILNDMRDTLADMRQRIGYGRGIAAPQIGV 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           L RL++ID  D       +V +NP+   +S +     E C S P     V+R   +TV  
Sbjct: 61  LKRLILIDTPD-----TNLVLVNPRFERWSREEDERYESCFSFPGIWGLVQRPLGVTVVA 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                + Q I A G L+  +QHE+DHL+G +++D    L     T++  K
Sbjct: 116 YTLAGEEQRIEASGSLSRIIQHEMDHLDGFVWLDRGPDLHSLCTTQEYEK 165


>gi|296453662|ref|YP_003660805.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183093|gb|ADG99974.1| Peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
          Length = 217

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P         V INP     SD  + + EGCLS   Y+A  KR   IT  +
Sbjct: 90  DHVRDDEDDPREIAEFPFHVIINPSYRPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            D + +H      G  A   QHE DHL+G L+ID
Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYID 183


>gi|307729328|ref|YP_003906552.1| peptide deformylase [Burkholderia sp. CCGE1003]
 gi|307583863|gb|ADN57261.1| peptide deformylase [Burkholderia sp. CCGE1003]
          Length = 177

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R++ P++  ++ ++  LI +M E M+  +G GLAA QIGV  ++V+     +   
Sbjct: 10  DPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIFGFGSNERY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP I   S D     EGCLS+P  R  V R + I     D   +    
Sbjct: 70  PDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151


>gi|257068124|ref|YP_003154379.1| peptide deformylase [Brachybacterium faecium DSM 4810]
 gi|256558942|gb|ACU84789.1| peptide deformylase [Brachybacterium faecium DSM 4810]
          Length = 188

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 7/160 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I     L + +R + ++  ++  L+ +M E   +  G GLAA Q+G  +RL V
Sbjct: 1   MTVRPITIVGHKALTQRTRRVREVTDELRTLVADMFETNDAASGAGLAAPQVGSRWRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
               D +      V +NP +  F     D+ ++  EGCLS+P       R     V   D
Sbjct: 61  YSCPDASGTLRRGVVLNPVLERFGGIVLDEETL--EGCLSVPGEGFPTARHRGARVTGTD 118

Query: 117 CNAQHQIIYAD-GLLATCLQHELDHLNGILFIDHLSRLKR 155
            +    ++  + G+LA  LQHE+DHL G L++D L+  +R
Sbjct: 119 LDGAEVVVEDEGGVLARALQHEVDHLEGSLYLDRLAPARR 158


>gi|302878431|ref|YP_003846995.1| peptide deformylase [Gallionella capsiferriformans ES-2]
 gi|302581220|gb|ADL55231.1| peptide deformylase [Gallionella capsiferriformans ES-2]
          Length = 175

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 10/161 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++   D  L  V++P+   ++ + +++++M + M++ +G GLAA QIGV  R+V+
Sbjct: 1   MAIKPVLRMGDARLLEVAKPVTDFSA-LQDVLNDMQDTMHALNGAGLAAPQIGVGLRVVI 59

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++++   +       V INP +    D      EGCLS+P  R  V R  +  +RY 
Sbjct: 60  FGVEENSRYPDAESVPYTVLINPVVTPIDDLMEDDWEGCLSVPGLRGRVAR--YHAIRYQ 117

Query: 116 DCNAQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLK 154
             +A+   I     G  A  +QHE DHL+G+L+   ++ L+
Sbjct: 118 GVDAKGAPIDRSVSGFHARVVQHECDHLDGVLYPMRMTDLR 158


>gi|195499832|ref|XP_002097114.1| GE24677 [Drosophila yakuba]
 gi|194183215|gb|EDW96826.1| GE24677 [Drosophila yakuba]
          Length = 196

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 89/157 (56%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP+LR+ +   P E I+S +I  +I+ M++V+   D +G+AA Q+G+  R++V++ ++  
Sbjct: 14  DPVLRQRAEEVPPEDIDSMEINQIIEGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 73

Query: 66  --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   +  RK    P+ VFINP++   S   + + EGC+S+  + A+V+R   + +R
Sbjct: 74  QEQFKPEVYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGFSAEVERYDKVRIR 133

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +  +G  A   QHE+DHLNG +++D +
Sbjct: 134 GIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKM 170


>gi|209522380|ref|ZP_03270994.1| peptide deformylase [Burkholderia sp. H160]
 gi|209497186|gb|EDZ97427.1| peptide deformylase [Burkholderia sp. H160]
          Length = 177

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R++ P++  ++ ++  L+ +M E M++ +G GLAA QIGV  ++V+     +   
Sbjct: 10  DPRLLRIAEPVDHFDTPELHRLVADMFETMHAANGAGLAAPQIGVDLQVVIFGFGSNERY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP I   S D     EGCLS+P  R  V R + I     D        
Sbjct: 70  PDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGFDQFGNPIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151


>gi|327441213|dbj|BAK17578.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris
           StLB046]
          Length = 185

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 22/158 (13%)

Query: 12  PILR-RVSRPIEKINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58
           P LR R       ++++   L D+ML+ + ++             GIGLAA Q+  L R+
Sbjct: 13  PTLRTRAEEVTFPLSAEDRKLADDMLQYLINSQNPEIAEKYNLRGGIGLAANQVNSLKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS----IPDYRADVKRSAFITV 112
             + L+D        V +NPKI++ S    +    EGCLS    IP Y   V R A ITV
Sbjct: 73  FALHLEDENGELISFVAVNPKIVSHSVEQTYITSGEGCLSVDRAIPGY---VYRYARITV 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           ++M  + + + +   GL A   QHELDHLNG++F D +
Sbjct: 130 KFMTVDGEEKKMRLSGLPAIAFQHELDHLNGVMFYDRI 167


>gi|73541574|ref|YP_296094.1| peptide deformylase [Ralstonia eutropha JMP134]
 gi|72118987|gb|AAZ61250.1| Formylmethionine deformylase [Ralstonia eutropha JMP134]
          Length = 177

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 6/135 (4%)

Query: 18  SRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKN 71
           +RP+E+ N+ ++  LI++M + M   +G GLAA QIGV  ++V+     +     A +  
Sbjct: 17  ARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIFGFDRNPRYPDAPKVP 76

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V INP +   SDD     EGCLS+P  R  V R   +     D         A+G  A
Sbjct: 77  KTVLINPMLEMLSDDLEDGWEGCLSVPGLRGVVPRHTRLRYSGYDLMGGSIDRVAEGFHA 136

Query: 132 TCLQHELDHLNGILF 146
             +QHE DHL GIL+
Sbjct: 137 RVVQHECDHLQGILY 151


>gi|299067454|emb|CBJ38653.1| Peptide deformylase [Ralstonia solanacearum CMR15]
          Length = 177

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 77/151 (50%), Gaps = 10/151 (6%)

Query: 4   KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           +P++   D  L RV++P+ +  + ++  LI++M + M +  G GLAA QIGV  ++V+  
Sbjct: 3   RPILKMGDSRLLRVAKPVLRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFG 62

Query: 62  ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
               D    A      V INP I   SD      EGCLS+P  R  V R  +  VRY   
Sbjct: 63  FDRNDRYPDAPAVPKTVLINPTIEPLSDTMEDGWEGCLSVPGLRGVVPR--YTRVRYTGY 120

Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILF 146
           +     I   A+G  A  +QHE DHL GIL+
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILY 151


>gi|323526493|ref|YP_004228646.1| peptide deformylase [Burkholderia sp. CCGE1001]
 gi|323383495|gb|ADX55586.1| peptide deformylase [Burkholderia sp. CCGE1001]
          Length = 177

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R++ P++  ++ ++  LI +M E M+  +G GLAA QIGV  ++V+     +   
Sbjct: 10  DPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIFGFGSNERY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP I   S D     EGCLS+P  R  V R + I     D   +    
Sbjct: 70  PDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151


>gi|116783457|gb|ABK22950.1| unknown [Picea sitchensis]
          Length = 305

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+L   +    +++I S+ I  +ID+M+ VM++  G GLAA Q+GV  +++V++     
Sbjct: 124 DPVLHECAAEVAVDEIGSERIQKIIDDMIAVMWNAPGCGLAAPQLGVPLQIIVLEDKEEY 183

Query: 63  ------LQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                  +  A  ++P   ++ INPK+ +     + + EGCLS+  +R  V+R   + V 
Sbjct: 184 IRFTLKEETEAQERHPFDLLIIINPKLKSKGIKTAKFFEGCLSVNGFRGLVERHLEVEVT 243

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               +     I A G  A  LQHE DHL G+L++D L
Sbjct: 244 GFGRDGLPIKINATGWKARILQHECDHLAGLLYVDKL 280


>gi|170692137|ref|ZP_02883300.1| peptide deformylase [Burkholderia graminis C4D1M]
 gi|170142567|gb|EDT10732.1| peptide deformylase [Burkholderia graminis C4D1M]
          Length = 177

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R++ P++  ++ ++  LI +M E M+  +G GLAA QIGV  ++V+     +   
Sbjct: 10  DPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIFGFGSNERY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP I   S D     EGCLS+P  R  V R + I     D   +    
Sbjct: 70  PDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151


>gi|168014244|ref|XP_001759662.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689201|gb|EDQ75574.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 194

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 18/158 (11%)

Query: 11  DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+L   +  +  E I S  I   I++M++VM +  G+GLAA QIG+  +++V++     
Sbjct: 6   DPVLHEPAEEVMREDIGSARIEKAINDMVDVMRAGPGVGLAAPQIGIPLQIIVLEDTKEL 65

Query: 63  ------LQDHAHRKNP---MVFINPKI-ITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +  A ++ P   +V INPK+ +  S   + + EGCLS+  +RA V+R   + V
Sbjct: 66  MSYTSPEECEAQQRTPFDLLVIINPKLEMKASGGTAFFFEGCLSVAGHRALVERHLEVEV 125

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             +  + Q     A G  A  LQHE DHL G+L++D +
Sbjct: 126 TGLGRDGQPLHFTAKGWKARILQHEYDHLQGLLYVDRM 163


>gi|37626151|gb|AAQ96527.1| hypothetical protein [Vibrio phage VP16T]
          Length = 137

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 63/121 (52%), Gaps = 7/121 (5%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
             D+ +L+ +M   M +  GIGLA  Q+GVL R++V+              INP IIT  
Sbjct: 21  GEDVKDLVLDMTAAMTAAGGIGLAGNQVGVLKRIIVLRCPTFKG-----CVINP-IITRH 74

Query: 85  DDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
            D  VY  EGCLS P      KR   + V   D + Q   I A GL A CLQHE+DHLNG
Sbjct: 75  TDGHVYSPEGCLSYPGKTVAKKRRNKVVVEGYDMDWQPITIAAKGLTAFCLQHEIDHLNG 134

Query: 144 I 144
           +
Sbjct: 135 V 135


>gi|297162485|gb|ADI12197.1| peptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 14/159 (8%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V    P+LRR + P E ++++  ++ L+  M E M +  G+GLAA QIG+  R+ VI+
Sbjct: 21  PIVAAGVPVLRRPALPYEGQLSAGQLDRLVRAMRETMQAAPGVGLAAPQIGIPLRIAVIE 80

Query: 63  LQD-------HAHRKNPMVF---INPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFI 110
                      A  + P+ F   +NP      D    + + EGCLS+P ++A V R   I
Sbjct: 81  DPAEVSAEVREARGRVPLPFRVLVNPSYEPVGDPGRRAAFFEGCLSVPGWQAVVARPERI 140

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            +R  D   +       G  A  +QHE DHL+G L++D 
Sbjct: 141 RLRGQDERGRELDEEFAGWPARIVQHETDHLDGTLYLDR 179


>gi|320169511|gb|EFW46410.1| polypeptide deformylase [Capsaspora owczarzaki ATCC 30864]
          Length = 196

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 14/142 (9%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNP----------- 72
           +S    LID M+  M  T+G+G+AAVQ+G    +  I+    H     P           
Sbjct: 43  SSATQALIDRMIATMRRTEGVGIAAVQLGDNRAIACIEFTAKHLAEATPEMAATHKMEAV 102

Query: 73  --MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              V +NP+++  S D     EGCLS+P  +A V R   + +  +D N   Q +   G  
Sbjct: 103 PLTVMVNPRVLRASSDLVEGAEGCLSVPGMQAIVFRPRHVAIDCLDRNGAPQTLKLSGWS 162

Query: 131 ATCLQHELDHLNGILFIDHLSR 152
           A    HE+DHL G LF D + R
Sbjct: 163 ARIAMHEVDHLKGELFTDKMER 184


>gi|295099934|emb|CBK89023.1| peptide deformylase [Eubacterium cylindroides T2-87]
          Length = 184

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQI 52
           +++  DP +R+ SR +E  +N +   L++ +LE V  STD            +G+AA+Q+
Sbjct: 8   IILDTDPRIRQKSRKVELPLNQEDKELLEALLEYVRNSTDEEIAERDNLEPAVGIAAIQV 67

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADVKRSAF 109
           GV  +L+ + + D       +   NPKII+ S  + +    EGCLS+ + +   V R A 
Sbjct: 68  GVPKKLIAVVVPDEEGNVQEVALANPKIISESVQNAYLDNGEGCLSVKEVHEGHVFRHAR 127

Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           I VR  D      + I A+G  A  LQHE+DHL+GILF D + +
Sbjct: 128 IKVRGYDLIKDDNVTISAEGYFAIALQHEIDHLSGILFYDRIDK 171


>gi|312962671|ref|ZP_07777160.1| peptide deformylase [Pseudomonas fluorescens WH6]
 gi|311283046|gb|EFQ61638.1| peptide deformylase [Pseudomonas fluorescens WH6]
          Length = 179

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 14  LRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           L R++ P+  E  +S ++  LID+M + M    G+GLAA QIGV  +LV+   +  A  +
Sbjct: 13  LLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIFGFE--ASER 70

Query: 71  NP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            P        + INP I   S       EGCLS+P  R  V R   I     D   +  +
Sbjct: 71  YPDAPPVPQTILINPLITPLSPVLEEGYEGCLSVPGLRGAVNRYQQIRYEGFDPKGEPIV 130

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +ADG  A  +QHE DHL G L+   ++   +
Sbjct: 131 RFADGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|195330059|ref|XP_002031726.1| GM26159 [Drosophila sechellia]
 gi|194120669|gb|EDW42712.1| GM26159 [Drosophila sechellia]
          Length = 196

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP+LR+ +   P E ++S +I  +ID M++V+   D +G+AA Q+G+  R++V++ ++  
Sbjct: 14  DPVLRQRAEEVPPEDVDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGK 73

Query: 66  --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   +  RK    P+ VFINP +   S   + + EGC+S+  Y A V+R   + +R
Sbjct: 74  QEQFKPEIYEERKMSTLPLAVFINPVLEIISSQVNKHPEGCMSVRGYSAQVERYDKVRIR 133

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +  +G  A   QHE+DHLNG +++D +
Sbjct: 134 GIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKM 170


>gi|319442383|ref|ZP_07991539.1| polypeptide deformylase [Corynebacterium variabile DSM 44702]
          Length = 215

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 32/189 (16%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-------IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           P+VI  DP+L   + P+ +  +D       +  LI +M E +    G+GLAA Q+GV  R
Sbjct: 5   PVVICGDPVLHTPTTPVTEPAADQLGEGTELSTLIADMYETLELAHGVGLAANQVGVGLR 64

Query: 58  LVVIDLQD----HAHRK---------NPM---VFINPKIITFS-----DDFSVYQEGCLS 96
           + V D  D       RK          PM     INP + T        D     EGCLS
Sbjct: 65  VFVYDCPDIDGPEGTRKTQEEVDAQGGPMRRGCVINPVLETSEIPETMPDPEDDVEGCLS 124

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SR 152
           +P Y     R+ +  V   D + +   +   G  A CLQHE  HL+G L+ID L    +R
Sbjct: 125 VPGYDYPTGRADWARVTGTDEHGEPTSVEGYGFFARCLQHETGHLDGHLYIDMLIGRNAR 184

Query: 153 LKRDMITKK 161
             + M+ ++
Sbjct: 185 AAKKMVKRE 193


>gi|262200670|ref|YP_003271878.1| peptide deformylase [Gordonia bronchialis DSM 43247]
 gi|262084017|gb|ACY19985.1| peptide deformylase [Gordonia bronchialis DSM 43247]
          Length = 200

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 19/162 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           P+ I  +P+L R + P+      K +++++ L+D+M + M +  G+GLAA Q+GV  R+ 
Sbjct: 5   PICIIGEPVLHRRTEPVPLDDAGKPSAEVIALLDDMYDTMDAAHGVGLAANQVGVGLRMF 64

Query: 60  VIDLQDH----AHRK-----NPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           V D  +       R+     NP++  +  P+ +   DD     EGCLS+P  +    R+ 
Sbjct: 65  VYDCPEGERYVPERRRGEVINPVLETSEIPETMPDPDD---NDEGCLSVPGEQFPTGRAD 121

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D      ++   G  A  LQHE  HL+G L++D L
Sbjct: 122 WARVTGVDRTGAEVVVEGTGFFARMLQHETGHLDGFLYVDVL 163


>gi|302555792|ref|ZP_07308134.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302473410|gb|EFL36503.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 214

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++  +++   ++ +   M +  G+GLAA Q+GV  R+ VI+
Sbjct: 25  PIVAAGDPVLRRGTEPYDGQLAPELLARFVEALRVTMRAAPGVGLAAPQVGVPLRIAVIE 84

Query: 63  LQDH-------AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                      A  + P+ F   +NP         + + EGCLS+P ++A V R A + +
Sbjct: 85  DPAPVPEEVRLARGRVPLPFRVLVNPAYAPVGGARAAFFEGCLSVPGWQAVVARPAEVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
              D + +       G  A  +QHE DHL+G+L++D 
Sbjct: 145 TGQDEHGRALDEVFTGWPARIVQHETDHLDGVLYLDR 181


>gi|206971224|ref|ZP_03232175.1| peptide deformylase [Bacillus cereus AH1134]
 gi|206733996|gb|EDZ51167.1| peptide deformylase [Bacillus cereus AH1134]
          Length = 184

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIEKINSD------------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYR 57
           +PILR V+  +    S+            ++N  D  +   YS   GIGLAA QIGV  +
Sbjct: 12  NPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|291513863|emb|CBK63073.1| peptide deformylase [Alistipes shahii WAL 8301]
          Length = 202

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRA 102
           G+G+AA Q+G+L R++ +   D      P  F +NP+I+  S + +  +EGCLSIP    
Sbjct: 89  GVGIAAPQVGILRRMIAVQRFDKP--GEPFEFYLNPEIVESSAETAPGREGCLSIPGLAG 146

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            V R+  I +RY D     +    DG  A   QHE DHL+GIL+ D 
Sbjct: 147 TVVRAQRIVLRYPDERFAEKTETIDGFTAVIFQHETDHLDGILYTDR 193


>gi|195055502|ref|XP_001994656.1| GH17360 [Drosophila grimshawi]
 gi|193892419|gb|EDV91285.1| GH17360 [Drosophila grimshawi]
          Length = 203

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           DP+LR  +  +  E+I S +I ++++ M++V+   D +G+AA Q+GV  R++V++ ++  
Sbjct: 21  DPVLRLCAEEVSAERIASQEIKDIVEQMVKVLRHYDCVGVAAPQLGVPMRIIVMEFREGK 80

Query: 66  --------HAHRKN---PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   +  RK    P+ +FINP+I   SD    + EGC+S+  Y A V R   + V 
Sbjct: 81  REQFTPEVYEERKMSHLPLTIFINPQIEIISDKQHTHPEGCMSVRGYSAKVSRYDRVRVT 140

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +   G  A   QHE+DHLNGI++ID +
Sbjct: 141 GIGILGTPSELELVGWSARIAQHEMDHLNGIVYIDRM 177


>gi|241764867|ref|ZP_04762871.1| peptide deformylase [Acidovorax delafieldii 2AN]
 gi|241365616|gb|EER60346.1| peptide deformylase [Acidovorax delafieldii 2AN]
          Length = 197

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 11/145 (7%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R+++P++K ++ ++  LI +MLE M +  G GLAA QIGV  ++V+    +   R
Sbjct: 29  DPRLLRIAQPVQKFDTPELHQLIRDMLETMRAAQGAGLAAPQIGVDLQVVIFGSNEPNRR 88

Query: 70  KN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P V +NP I    +D     EGCLS+P  R  V R  ++ +RY   +A    
Sbjct: 89  YPDRPLVPPTVLVNPVITPLGEDEEEDWEGCLSVPGLRGKVPR--WLHIRYSGFDAHGSP 146

Query: 124 I--YADGLLATCLQHELDHLNGILF 146
           I   A+G  A  +QHE DHL G L+
Sbjct: 147 IDRVAEGFHARVVQHECDHLMGKLY 171


>gi|254490724|ref|ZP_05103908.1| peptide deformylase [Methylophaga thiooxidans DMS010]
 gi|224464079|gb|EEF80344.1| peptide deformylase [Methylophaga thiooxydans DMS010]
          Length = 178

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 12  PILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           P+LR+ + P+  I +         +L  +    G+G+AA Q+G+  +  +  L  H + +
Sbjct: 13  PLLRQRAEPVYDILAPAFQAQAKALLSFVIEKGGMGIAAPQVGISQQFFI--LSSHPNSR 70

Query: 71  -------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P   INP+ I  SD  +   EGCLS+P  RA V R   ITVRY         
Sbjct: 71  YPYAPDVPPFFVINPERIAHSDTSNKDWEGCLSLPGIRALVPRFDDITVRYQTLEGDTVE 130

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              DG LA   QHE DHLNG +F+D +      M+ K+  K +
Sbjct: 131 KMYDGFLARVFQHEHDHLNGHVFLDRVESNYDVMMEKEWQKQI 173


>gi|195330061|ref|XP_002031727.1| GM26160 [Drosophila sechellia]
 gi|194120670|gb|EDW42713.1| GM26160 [Drosophila sechellia]
          Length = 238

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR+ +   P E ++S +I  +++ M++V+   D +G+AA QIGV  R++ ++ +   
Sbjct: 56  DPVLRQQAALVPKEHMDSPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRI 115

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++ P               VFINP +   +     + EGC+S+  Y A+V+R   + + 
Sbjct: 116 RKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGVKLT 175

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 176 GLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|325982985|ref|YP_004295387.1| peptide deformylase [Nitrosomonas sp. AL212]
 gi|325532504|gb|ADZ27225.1| peptide deformylase [Nitrosomonas sp. AL212]
          Length = 177

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   +P+L +V++P+++ ++ ++  LI +M + M   +G GLAA QIGV  ++V
Sbjct: 1   MAIKPVLKMGEPLLLQVAKPVDRFDTPELHELIQDMQDTMAYLNGAGLAAPQIGVSLQVV 60

Query: 60  VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +   + +    +       V +NP +   SD+     EGCLS+P  R  V R   +  + 
Sbjct: 61  IFGFEKNQRYPDADEVPFTVLLNPHLTPLSDEKEDGWEGCLSVPGLRGIVPRYTNLHYQG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
            D          +G  A  +QHE DHL GIL+
Sbjct: 121 FDQYGSAIDRNVNGFHARVVQHECDHLQGILY 152


>gi|111019169|ref|YP_702141.1| peptide deformylase [Rhodococcus jostii RHA1]
 gi|110818699|gb|ABG93983.1| peptide deformylase [Rhodococcus jostii RHA1]
          Length = 196

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 13/157 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I  DP+L   +  + +  +++  +I +M + M + +G+GLAA Q+G+  RL V D  
Sbjct: 5   PIRIVGDPVLHEPTEAVSQSPAELAEIIADMYDTMDAANGVGLAANQVGLPLRLFVYDCP 64

Query: 65  D-----HAHRK-----NPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113
           D      A R+     NP++  + +  T  D D  V  EGCLS+P  +    R+ +  V 
Sbjct: 65  DVDGDGKALRRRGCVVNPVLETSERPETMPDPDDDV--EGCLSVPGEQFPTGRAEWAKVT 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             D +     I   G  A  LQHE+ HL+G L++D L
Sbjct: 123 GTDADGNAVEIEGHGFFARMLQHEVGHLDGFLYVDML 159


>gi|91788452|ref|YP_549404.1| peptide deformylase [Polaromonas sp. JS666]
 gi|91697677|gb|ABE44506.1| Peptide deformylase [Polaromonas sp. JS666]
          Length = 179

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 13/146 (8%)

Query: 11  DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L RV++P+   ++D ++L + +M + M + DG GLAA QIGV  ++V+    D  + 
Sbjct: 11  DPRLFRVAQPVAAFDTDALHLLVSDMFDTMRAADGAGLAAPQIGVNLQVVIFG-ADQVNP 69

Query: 70  KNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + P        V +NP I   S D     EGCLS+P  R  V R  F  +RY   +    
Sbjct: 70  RYPDAPLVPRTVLLNPVITPLSADEEEGWEGCLSVPGLRGLVPR--FSHIRYTGFDQYGD 127

Query: 123 II--YADGLLATCLQHELDHLNGILF 146
            I    DG  A  +QHE DHL G L+
Sbjct: 128 PIDRTVDGFHARVVQHECDHLMGKLY 153


>gi|124023604|ref|YP_001017911.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303]
 gi|123963890|gb|ABM78646.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT
           9303]
          Length = 181

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 7/157 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K ++   +P LR+VS+ ++ ++++ I++LI ++ + + +  G GLAA QIG+  R+V
Sbjct: 1   MAVKEILRMGNPQLRQVSKVVDDVSAELIISLIKDLQDTVKAHQGAGLAAPQIGIPLRVV 60

Query: 60  VIDLQDHAHR--KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +        R  + P +     INP +     D     EGCLS+P  R  V R + I  R
Sbjct: 61  LFGGGGPNPRYPEAPSIPQTLLINPVLTPIDSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++ +        +G  A  +QHE DHL+G+LF D L
Sbjct: 121 ALNEDGLEIEHCLEGFPARVIQHECDHLDGVLFTDRL 157


>gi|311063862|ref|YP_003970587.1| peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|310866181|gb|ADP35550.1| Peptide deformylase [Bifidobacterium bifidum PRL2010]
          Length = 217

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query: 5   PLVIFPDPILRRVS-RPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+ + +   +++   +N LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQQTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P         V INP      D    + EGCLS   Y+A  +R   IT R+
Sbjct: 90  DHVRDDEDDPREIAEFPFHVIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDITARW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            D N +       G  A   QHE DHL+G L+ID
Sbjct: 150 ADENGKQHEERLHGWPARIFQHETDHLSGELYID 183


>gi|317482560|ref|ZP_07941575.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915982|gb|EFV37389.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 217

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAAPQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P         V INP     SD  + + EGCLS   Y+A  KR   IT  +
Sbjct: 90  DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            D + +H      G  A   QHE DHL+G L+ID
Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYID 183


>gi|207723348|ref|YP_002253747.1| polypeptide deformylase (partial sequence) protein [Ralstonia
           solanacearum MolK2]
 gi|206588547|emb|CAQ35510.1| probable polypeptide deformylase (partial sequence) protein
           [Ralstonia solanacearum MolK2]
          Length = 181

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 10/153 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           V +P++   D  L RV++ +++  + ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 5   VIRPILKMGDSRLLRVAQSVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 64

Query: 61  IDL-QDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               ++  +   P     V INP I   SD+     EGCLS+P  R  V R  +  +RY 
Sbjct: 65  FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPR--YTRLRYT 122

Query: 116 DCNAQHQII--YADGLLATCLQHELDHLNGILF 146
             +     I   A+G  A  +QHE DHL GIL+
Sbjct: 123 GYDQHGHAIDRVAEGFHARVVQHECDHLQGILY 155


>gi|306836963|ref|ZP_07469913.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
 gi|304567146|gb|EFM42761.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
          Length = 207

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 21/176 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P+VI  +P+L + + P+E+    + ++  LI +M E M    G+GLAA Q+G+  R
Sbjct: 1   MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60

Query: 58  LVVIDLQD-------------HAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           L V    D                RK    NP++  +    T   D     EGCLS+P  
Sbjct: 61  LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR 155
                R+ +  V   D +     +   G  A CLQHE  HL+G ++ D L  R KR
Sbjct: 121 GFPTGRADWARVTGKDEHGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKR 176


>gi|195571953|ref|XP_002103965.1| GD20713 [Drosophila simulans]
 gi|194199892|gb|EDX13468.1| GD20713 [Drosophila simulans]
          Length = 239

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR+ +   P E ++S +I  +++ M++V+   D +G+AA QIGV  R++ ++ +   
Sbjct: 56  DPVLRQQAALVPKEHMDSPEIGAIVEQMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRI 115

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++ P               VFINP +   +     + EGC+S+  Y A+V+R   + + 
Sbjct: 116 RKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGVKLT 175

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 176 GLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|50954573|ref|YP_061861.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951055|gb|AAT88756.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 188

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  D +L   +  +   + ++  L+  M + M    G+GLA  Q+GV  RL V
Sbjct: 1   MAVLPIRITGDRVLHTRADEVTAFDRELRTLVAEMFDTMDEAPGVGLAGPQVGVPLRLFV 60

Query: 61  IDLQDH---AHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
               D     HR    NP+++ +P + T   D     EGCLS P  R  ++R+  + ++ 
Sbjct: 61  YGWTDDDEVLHRGVAINPVLWQSP-LETGPLDEDAECEGCLSFPGERFPLRRAERVILQA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +D       +  +G LA   QHE DHL G+L++D L 
Sbjct: 120 VDLEGAPFEVRTEGWLARIFQHECDHLEGVLYVDRLG 156


>gi|229019177|ref|ZP_04176010.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1273]
 gi|229025422|ref|ZP_04181837.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1272]
 gi|228735877|gb|EEL86457.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1272]
 gi|228742117|gb|EEL92284.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1273]
          Length = 184

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           +PILR V+  +    + +  N +  M+E V+ S D           GIGLAA QIG+  +
Sbjct: 12  NPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQIGISKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDTNGTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|239991763|ref|ZP_04712427.1| peptide deformylase [Streptomyces roseosporus NRRL 11379]
          Length = 206

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 4/163 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           + +  + +LRR  + +    + ++  L+D+M        G GLAA QIGV  ++ V D+ 
Sbjct: 26  ITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFVWDIT 85

Query: 65  DHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D    ++    +NP   +I           EGCLS+P     V R     VR  D +   
Sbjct: 86  DDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDMDGAP 145

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +I   G  A CLQHE DHL+G L++D L+R +R    ++M++
Sbjct: 146 LVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAE 188


>gi|239945304|ref|ZP_04697241.1| peptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291448765|ref|ZP_06588155.1| peptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291351712|gb|EFE78616.1| peptide deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 219

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 4/163 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           + +  + +LRR  + +    + ++  L+D+M        G GLAA QIGV  ++ V D+ 
Sbjct: 39  ITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFVWDIT 98

Query: 65  DHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D    ++    +NP   +I           EGCLS+P     V R     VR  D +   
Sbjct: 99  DDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDMDGAP 158

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +I   G  A CLQHE DHL+G L++D L+R +R    ++M++
Sbjct: 159 LVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAE 201


>gi|170755594|ref|YP_001780500.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|169120806|gb|ACA44642.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra]
          Length = 166

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 11/169 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M  KP+++  D IL R+S  I+K N D    ++N + N +    +  G G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHNTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  H      FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKTH-----YFINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            + + +   +Y +G L+   QHE DHL+GIL +     LK   I K  S
Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164


>gi|187924438|ref|YP_001896080.1| peptide deformylase [Burkholderia phytofirmans PsJN]
 gi|187715632|gb|ACD16856.1| peptide deformylase [Burkholderia phytofirmans PsJN]
          Length = 177

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R++ P++  ++ ++  L+ +M E M+  +G GLAA QIGV  ++V+     +   
Sbjct: 10  DPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVIFGFGHNERY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP I   S D     EGCLS+P  R  V R + I     D   +    
Sbjct: 70  PDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151


>gi|332529198|ref|ZP_08405162.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
 gi|332041421|gb|EGI77783.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
          Length = 179

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 15/147 (10%)

Query: 11  DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L RV++P++  ++D ++L + ++L+ M++ +G GLAA QIGV  R+V+      + +
Sbjct: 11  DPRLLRVAQPVQAFDTDELHLLVSDLLDTMHAANGAGLAAPQIGVDLRVVIFG----SGQ 66

Query: 70  KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            NP           V  NP I   SD+     EGCLS+P  R  V R   I  +  D   
Sbjct: 67  TNPRYPDAPVVPRTVLCNPVITPLSDEEQHDWEGCLSVPGLRGVVPRWQRIRYQGFDQYG 126

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
                  +G  A  +QHE DHL+G L+
Sbjct: 127 DPIDRTVEGFHARVVQHECDHLDGKLY 153


>gi|229817674|ref|ZP_04447956.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM
           20098]
 gi|229785463|gb|EEP21577.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM
           20098]
          Length = 160

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLQTVDDPGRAGLSANQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++         + +I   +I          EGCLS+P      +R+ +  VR +D + +
Sbjct: 61  YNID------GKIGYILNPVIEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             ++   GL    LQHE DHL+G +++D L + +R    + M
Sbjct: 115 EIVLEGHGLFGRMLQHECDHLDGHVYLDRLEKEERREAMRYM 156


>gi|224541764|ref|ZP_03682303.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525368|gb|EEF94473.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM
           15897]
          Length = 186

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 9/118 (7%)

Query: 44  GIGLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLS 96
           G+G+AA+QIG+  R+  I     D + +  + +    +NP+I+  +   +  +  EGCLS
Sbjct: 55  GVGIAAIQIGIPKRMCAIYIPAVDEEGNIVKCDQWALVNPRIVASTVKVAYLKNGEGCLS 114

Query: 97  IP-DYRADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +P D    V RSA +TV+  D    Q   I A G  A CLQHELDH  GIL+ DH ++
Sbjct: 115 VPEDQPGIVPRSAKVTVKGYDALTDQEVTIVARGFTAICLQHELDHFEGILYYDHFNK 172


>gi|145589658|ref|YP_001156255.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048064|gb|ABP34691.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 181

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 12/146 (8%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           DP L  +++P++     +  I  LID++LE MY+ +G GLAA QIGV  ++VV     + 
Sbjct: 11  DPRLLEIAKPVDPKLISSQQIQTLIDDLLETMYAVNGAGLAAPQIGVNQQVVVFGFDQNP 70

Query: 67  ----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A +    + INP I   SD      EGCLS+P  RA V R  +  +RY   +   Q
Sbjct: 71  RYPDAEQVPETILINPIITPLSDISMEDWEGCLSVPGLRAKVPR--YTKIRYQGFDRYGQ 128

Query: 123 II--YADGLLATCLQHELDHLNGILF 146
            I    +   A  ++HE DHL G LF
Sbjct: 129 SIDRTVEDFHARVVRHECDHLIGKLF 154


>gi|148546572|ref|YP_001266674.1| peptide deformylase [Pseudomonas putida F1]
 gi|148510630|gb|ABQ77490.1| peptide deformylase [Pseudomonas putida F1]
          Length = 178

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 8/168 (4%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
           D  L R++ P+ +    ++++  LID+M E M    G+GLAA QIG+  +LV+   +   
Sbjct: 10  DERLLRIAPPVPEHMFGSAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIFGFERSE 69

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      + +NP I   S +     EGCLS+P  R  V R   I  + +D      
Sbjct: 70  RYPDAEAVPQTILLNPVITPTSSEIEDGWEGCLSVPGLRGVVPRFKHIGYQGIDPQGNPI 129

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +ADG  A  +QHE DHL G L+   +    R   T+ +   +++ D
Sbjct: 130 NRFADGFHARVVQHECDHLIGRLYPSRIQDFSRFGYTEVLFPGLEVSD 177


>gi|186476100|ref|YP_001857570.1| peptide deformylase [Burkholderia phymatum STM815]
 gi|184192559|gb|ACC70524.1| peptide deformylase [Burkholderia phymatum STM815]
          Length = 177

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R+++P++  ++ ++  L+ +M E M+  +G GLAA QIGV  ++V+     +   
Sbjct: 10  DPRLLRIAKPVDHFDTPELHELVRDMFETMHDANGAGLAAPQIGVDLQVVIFGFGHNERY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP I   S D     EGCLS+P  R  V R + I     D   +    
Sbjct: 70  PDAPSVPETVLINPTITPVSLDTEEGWEGCLSVPGLRGAVSRLSMIRYHGFDQFGKPIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 VAEGFHARVVQHECDHLIGKLY 151


>gi|53719772|ref|YP_108758.1| peptide deformylase [Burkholderia pseudomallei K96243]
 gi|53723743|ref|YP_103199.1| peptide deformylase [Burkholderia mallei ATCC 23344]
 gi|76809016|ref|YP_333979.1| peptide deformylase [Burkholderia pseudomallei 1710b]
 gi|121601445|ref|YP_993377.1| peptide deformylase [Burkholderia mallei SAVP1]
 gi|126440852|ref|YP_001059473.1| peptide deformylase [Burkholderia pseudomallei 668]
 gi|126452569|ref|YP_001066757.1| peptide deformylase [Burkholderia pseudomallei 1106a]
 gi|134277462|ref|ZP_01764177.1| peptide deformylase [Burkholderia pseudomallei 305]
 gi|167004075|ref|ZP_02269849.1| peptide deformylase [Burkholderia mallei PRL-20]
 gi|167720172|ref|ZP_02403408.1| peptide deformylase [Burkholderia pseudomallei DM98]
 gi|167739177|ref|ZP_02411951.1| peptide deformylase [Burkholderia pseudomallei 14]
 gi|167816388|ref|ZP_02448068.1| peptide deformylase [Burkholderia pseudomallei 91]
 gi|167824767|ref|ZP_02456238.1| peptide deformylase [Burkholderia pseudomallei 9]
 gi|167846298|ref|ZP_02471806.1| peptide deformylase [Burkholderia pseudomallei B7210]
 gi|167894880|ref|ZP_02482282.1| peptide deformylase [Burkholderia pseudomallei 7894]
 gi|167903269|ref|ZP_02490474.1| peptide deformylase [Burkholderia pseudomallei NCTC 13177]
 gi|167911509|ref|ZP_02498600.1| peptide deformylase [Burkholderia pseudomallei 112]
 gi|167919519|ref|ZP_02506610.1| peptide deformylase [Burkholderia pseudomallei BCC215]
 gi|217421605|ref|ZP_03453109.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|237812813|ref|YP_002897264.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|238563756|ref|ZP_00438343.2| peptide deformylase [Burkholderia mallei GB8 horse 4]
 gi|242316254|ref|ZP_04815270.1| peptide deformylase [Burkholderia pseudomallei 1106b]
 gi|254178715|ref|ZP_04885370.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|254179317|ref|ZP_04885916.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|254189297|ref|ZP_04895808.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254197856|ref|ZP_04904278.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|254200152|ref|ZP_04906518.1| peptide deformylase [Burkholderia mallei FMH]
 gi|254206490|ref|ZP_04912842.1| peptide deformylase [Burkholderia mallei JHU]
 gi|254258903|ref|ZP_04949957.1| peptide deformylase [Burkholderia pseudomallei 1710a]
 gi|254297203|ref|ZP_04964656.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
 gi|52210186|emb|CAH36165.1| putative deformylase [Burkholderia pseudomallei K96243]
 gi|52427166|gb|AAU47759.1| polypeptide deformylase [Burkholderia mallei ATCC 23344]
 gi|76578469|gb|ABA47944.1| polypeptide deformylase [Burkholderia pseudomallei 1710b]
 gi|121230255|gb|ABM52773.1| polypeptide deformylase [Burkholderia mallei SAVP1]
 gi|126220345|gb|ABN83851.1| peptide deformylase [Burkholderia pseudomallei 668]
 gi|126226211|gb|ABN89751.1| peptide deformylase [Burkholderia pseudomallei 1106a]
 gi|134251112|gb|EBA51191.1| peptide deformylase [Burkholderia pseudomallei 305]
 gi|147749748|gb|EDK56822.1| peptide deformylase [Burkholderia mallei FMH]
 gi|147753933|gb|EDK60998.1| peptide deformylase [Burkholderia mallei JHU]
 gi|157806966|gb|EDO84136.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
 gi|157936976|gb|EDO92646.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|160699754|gb|EDP89724.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|169654597|gb|EDS87290.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|184209857|gb|EDU06900.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|217395347|gb|EEC35365.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|237504956|gb|ACQ97274.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|238520038|gb|EEP83502.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
 gi|242139493|gb|EES25895.1| peptide deformylase [Burkholderia pseudomallei 1106b]
 gi|243060514|gb|EES42700.1| peptide deformylase [Burkholderia mallei PRL-20]
 gi|254217592|gb|EET06976.1| peptide deformylase [Burkholderia pseudomallei 1710a]
          Length = 177

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68
           DP L  V+RP+E  N+ ++  L+ +M E M+  +G GLAA QIGV  ++++        +
Sbjct: 10  DPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGSSERY 69

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P     V +NP I     D     EGCLS+P  R  V R   +     D        
Sbjct: 70  PEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQYGAKLER 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 IAEGFHARVVQHEYDHLIGKLY 151


>gi|163941714|ref|YP_001646598.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|229013180|ref|ZP_04170324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           DSM 2048]
 gi|229061641|ref|ZP_04198980.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH603]
 gi|229168715|ref|ZP_04296436.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH621]
 gi|163863911|gb|ABY44970.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|228614727|gb|EEK71831.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH621]
 gi|228717648|gb|EEL69304.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH603]
 gi|228748130|gb|EEL97991.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           DSM 2048]
          Length = 184

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           +PILR V+  +    + +  N +  M+E V+ S D           GIGLAA QIG+  +
Sbjct: 12  NPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQIGISKK 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|260905538|ref|ZP_05913860.1| peptide deformylase [Brevibacterium linens BL2]
          Length = 221

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DPILR+ +RP +    ++++  L + M   M +  G+GLA  Q+G+   + V +
Sbjct: 27  PIVEAGDPILRQTTRPFDGQVDDAELAQLAEVMRATMLAAPGVGLAGPQVGIGLSMFVAE 86

Query: 63  -------LQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                        +++PM   V +N +    + +   + EGCLSIP Y+A V R   I +
Sbjct: 87  DPGSLDPETAEVRQRSPMPLRVVLNAEYTPATSENVAFFEGCLSIPGYQAVVARPRSIEL 146

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             +D N         G  A  + HE DHL+GI+++D
Sbjct: 147 TGVDLNGTPIAEVVAGWSARIVAHETDHLDGIMYLD 182


>gi|229134783|ref|ZP_04263591.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST196]
 gi|228648636|gb|EEL04663.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST196]
          Length = 181

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           +PILR V+  +    + +  N +  M+E V+ S D           GIGLAA QIG+  +
Sbjct: 9   NPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQIGISKK 68

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +  Q  EGCLS+    P Y   V R   IT
Sbjct: 69  MIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGY---VPRYTRIT 125

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 126 VKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166


>gi|330971091|gb|EGH71157.1| peptide deformylase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 179

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 14  LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65
           L R++ P+      +S++  LI +M E M+S  G+GLAA QIGV  +LV+   +      
Sbjct: 13  LLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGVDLQLVIFGFERNERYP 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124
            A      + INP I   S       EGCLS+P  R  V R  + ++RY   + Q Q I 
Sbjct: 73  QAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPQGQPIE 130

Query: 125 -YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             A G  A  +QHE DHL G L+   ++   +
Sbjct: 131 RVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|154487371|ref|ZP_02028778.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis
           L2-32]
 gi|154083889|gb|EDN82934.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis
           L2-32]
          Length = 161

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP ++  +       EGCLS+P      +R+ +  VR +D + +
Sbjct: 61  YNIDGKIG-----YVLNP-VLEETSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             ++   G++   LQHE DHL+G +++D L + +R
Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEER 149


>gi|116335077|ref|YP_802572.1| peptide deformylase [Candidatus Carsonella ruddii PV]
 gi|116235358|dbj|BAF35206.1| peptide deformylase [Candidatus Carsonella ruddii PV]
          Length = 154

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 83/142 (58%), Gaps = 3/142 (2%)

Query: 9   FPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           F D  +R   + ++   N +I+ +I  M+ +MY  +GIG+++ QI     +++ D+  + 
Sbjct: 7   FKDKRIRLFFKNVKVSFNYNILYIIKQMIILMYKNNGIGISSNQINCFKNIIICDV--NF 64

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            +K P++ INPKI+  + + ++  EGCLSI ++   V R   + ++Y +   + +    +
Sbjct: 65  KKKKPLIMINPKILINNKNHTLGMEGCLSIKNFLISVLRFDKVYIKYFNIYNKKKKKIFN 124

Query: 128 GLLATCLQHELDHLNGILFIDH 149
           G+ + C+QHE+DHLN  L +D+
Sbjct: 125 GIKSRCIQHEIDHLNSKLILDY 146


>gi|117165081|emb|CAJ88634.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC
           23877]
          Length = 214

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++   ++   ++ +   M +  G+GLAA Q+GV  R+ VI+
Sbjct: 25  PIVAAGDPVLRRPAEPFDGQLEPALLARFVEALRLTMRAAPGVGLAAPQVGVGLRIAVIE 84

Query: 63  ----LQDH---AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
               + D    A  + P  F   +NP         + + EGCLS+P ++A V R A + +
Sbjct: 85  DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGPGRAAFYEGCLSVPGWQAVVARHAEVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
              D + +      +G  A  +QHE DHL+G+L++D 
Sbjct: 145 VARDEHGRAVDEVFEGWPARIVQHETDHLDGVLYLDR 181


>gi|312131008|ref|YP_003998348.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
 gi|311907554|gb|ADQ17995.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
          Length = 218

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 3/104 (2%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRA 102
           G+G+AA Q+GV    + +   D   +  P  F INPKI   S+   +  EGCLSIPD R 
Sbjct: 85  GVGIAAPQVGVNRNAIWVQRFDKPGQ--PFEFYINPKITWKSELLQLGAEGCLSIPDTRD 142

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           +V RS  I + Y   N  H     +G  A   QHE+DHL GILF
Sbjct: 143 NVVRSYAIQLSYSQLNGAHHTEVIEGFTAVIFQHEIDHLYGILF 186


>gi|319937459|ref|ZP_08011864.1| peptide deformylase [Coprobacillus sp. 29_1]
 gi|319807299|gb|EFW03908.1| peptide deformylase [Coprobacillus sp. 29_1]
          Length = 189

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 22/163 (13%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58
           P++R +S+P+E  I  +   L+ +M E + ++              +G+AAVQ+GVL R+
Sbjct: 13  PLIREISQPVEMPICQEDEQLLLDMHEFLVNSQDEEMSEKYHLRPAVGIAAVQVGVLKRM 72

Query: 59  VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSAFI 110
             I     D   +  + +    +NPKI+++++  S  +  EGCLS+  D    V R A +
Sbjct: 73  CAIHVLSYDDDGNISKADDYALVNPKIVSYTEKGSYLKDGEGCLSVNDDVEGLVPRHAKV 132

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV+  D      + I A G L+ CLQHELDH +G LF D +++
Sbjct: 133 TVKGYDVLTHKNVTIVARGYLSICLQHELDHFDGKLFYDRINK 175


>gi|28572612|ref|NP_789392.1| peptide deformylase [Tropheryma whipplei TW08/27]
 gi|39930875|sp|Q83HQ3|DEF_TROW8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28410744|emb|CAD67130.1| peptide deformylase [Tropheryma whipplei TW08/27]
          Length = 201

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I    +L   ++P+    S I  ++ +M   M++  G+GLA  QIG+  R+ V    
Sbjct: 11  PIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYSYT 69

Query: 65  --DHAHRK---NPMVFIN---PKIITFSDDFSVY-------QEGCLSIPDYRADVKRSAF 109
             D  H+    NP + I    PK  T     +         +EGCLS P Y+  ++R+  
Sbjct: 70  EGDTLHQGVAINPDLLIPKGVPKRQTHKQQANNSTSCDEPDREGCLSFPGYQFPLERAPQ 129

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +T+   D N +   ++A G LA   QHE DHL G L++D L++
Sbjct: 130 VTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRLAQ 172


>gi|24372647|ref|NP_716689.1| polypeptide deformylase [Shewanella oneidensis MR-1]
 gi|32363157|sp|Q8EHZ2|DEF2_SHEON RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|24346687|gb|AAN54134.1|AE015550_9 polypeptide deformylase [Shewanella oneidensis MR-1]
          Length = 181

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 15/167 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL++ +  +   +  +  L   M   M    G+G+AA Q+     L ++   
Sbjct: 15  PIAVVGEAILKQQAIEVRDFDDTLSQLASQMAASMVEAKGVGIAAPQVHSPLALFIM--- 71

Query: 65  DHAHRKN----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             A R N          P+V +NP+I+  S      +EGCLS+P  R  + R   I VRY
Sbjct: 72  --ASRPNERYPDAPLMEPLVVVNPQIVLRSLQLEKGEEGCLSVPGQRFTIWRPQTIVVRY 129

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            +   Q Q     G +A   QHE DHL GI  ++     ++ ++ ++
Sbjct: 130 QNLAGQWQHSELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMAQE 176


>gi|124386084|ref|YP_001029186.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|126448140|ref|YP_001080884.1| peptide deformylase [Burkholderia mallei NCTC 10247]
 gi|254358101|ref|ZP_04974374.1| peptide deformylase [Burkholderia mallei 2002721280]
 gi|124294104|gb|ABN03373.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|126241010|gb|ABO04103.1| peptide deformylase [Burkholderia mallei NCTC 10247]
 gi|148027228|gb|EDK85249.1| peptide deformylase [Burkholderia mallei 2002721280]
          Length = 177

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68
           DP L  V+RP+E  N+ ++  L+ +M E M+  +G GLAA QIGV  ++++        +
Sbjct: 10  DPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGSSERY 69

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P     V +NP I     D     EGCLS+P  R  V R   +     D        
Sbjct: 70  PEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSLPGLRGVVSRYRRVRYSGFDQYGAKLER 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 IAEGFHARVVQHEYDHLIGKLY 151


>gi|271964329|ref|YP_003338525.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270507504|gb|ACZ85782.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 182

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  + P++  + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIQSIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMMDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             + +          INP +    +     +EGCLS P       R+     + ++ + +
Sbjct: 61  YYVDEQLGH-----LINPNLDLSEEKDEEGEEGCLSFPGLSFPTPRAIRAVAKGLNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +    L+A C QHE DHL+G+LFID +   +R +  K++ +
Sbjct: 116 PVTLEGTDLMARCFQHETDHLDGVLFIDRMDLKQRKLAMKEIRE 159


>gi|77460570|ref|YP_350077.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
 gi|77384573|gb|ABA76086.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
          Length = 179

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 20  PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN------P 72
           P E ++S ++  LID+M + M S  G+GLAA QIGV  +LV+   + H+ R         
Sbjct: 21  PAEMLDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFE-HSERYPDAEAVPQ 79

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            + INP I   S       EGCLS+P  R  V R   I    +D   +  +  A G  A 
Sbjct: 80  TILINPLITPLSPLMEEGFEGCLSVPGLRGAVDRYQQIRYEGVDPKGEPIVRVASGFHAR 139

Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +QHE DHL G L+   ++   +   T+ M
Sbjct: 140 VVQHECDHLIGRLYPSRITDFSKFGFTEVM 169


>gi|229592219|ref|YP_002874338.1| peptide deformylase [Pseudomonas fluorescens SBW25]
 gi|229364085|emb|CAY51686.1| peptide deformylase [Pseudomonas fluorescens SBW25]
          Length = 179

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 14  LRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           L R++ P+  E  +S ++  LID+M + M    G+GLAA QIGV  +LV+   +  A  +
Sbjct: 13  LLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIFGFE--ASER 70

Query: 71  NP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            P        + INP I           EGCLS+P  R  V R   I     D   +  +
Sbjct: 71  YPDAPPVPQTILINPLITPLGPVLEEGYEGCLSVPGMRGAVSRYQQIRYEGFDPKGEPIV 130

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +ADG  A  +QHE DHL G L+   ++   +
Sbjct: 131 RFADGFHARLVQHECDHLIGRLYPSRITDFSK 162


>gi|296269346|ref|YP_003651978.1| peptide deformylase [Thermobispora bispora DSM 43833]
 gi|296092133|gb|ADG88085.1| peptide deformylase [Thermobispora bispora DSM 43833]
          Length = 182

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  + P+   + ++  L+ ++ + M   +G GLAA QIGV  R+  
Sbjct: 1   MAIRQIRLFGDPVLRTPAEPVVDFDKELRKLVKDLTDTMLDANGAGLAAPQIGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +    +     +EGCLS P       R+     +  +   +
Sbjct: 61  YNVDGQLGH-----LVNPNLDLSDEMDEEGEEGCLSFPGLSYPTPRAIRAVAKGFNMYGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    L+A CLQHE DHL+GILFID ++   R +  K + +
Sbjct: 116 PVTIEGTELMARCLQHETDHLDGILFIDRMNPEHRRLAMKAIRE 159


>gi|167837046|ref|ZP_02463929.1| peptide deformylase [Burkholderia thailandensis MSMB43]
          Length = 176

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA-H 68
           DP L  V+RP+E  N+ ++  L+ +M E M+  +G GLAA QIGV  ++++    +   +
Sbjct: 10  DPRLLEVARPVETFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGNSERY 69

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P     V +NP +     D     EGCLS+P  R  V R   +     D        
Sbjct: 70  PEAPPVPETVLVNPGVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQYGAKLER 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 IAEGFHARVVQHEYDHLIGKLY 151


>gi|109899738|ref|YP_662993.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
 gi|109702019|gb|ABG41939.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
          Length = 188

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 9/160 (5%)

Query: 13  ILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           ILR  ++ + + +         +D +L  M   +G+G+AA Q+     +++I  +     
Sbjct: 11  ILRTPAKSVSQTDIETGAFQEFVDALLATMQEANGVGIAAPQVFDERAVMIIASRPSPRY 70

Query: 70  KN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            N     P+V INPK+I  S++     EGCLS+P  R  ++R+ ++ + Y+  +      
Sbjct: 71  PNAPDMEPLVLINPKVIQSSEETVKDWEGCLSVPGLRGFIRRATWVEIEYLQRDGTPATQ 130

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             DG +A    HE DHL G  ++DH+  L  D++ + + +
Sbjct: 131 RLDGFVARIFLHEFDHLIGKTWLDHVE-LNTDIMAESVWR 169


>gi|227834098|ref|YP_002835805.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227455114|gb|ACP33867.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 210

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 18/173 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P+VI  DP+L   + P+ E I+S ++  LI +M E M +  G+GLAA QIGV  RL
Sbjct: 7   MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 66

Query: 59  VV-----------IDLQDHAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            V            +L +   R+    NP++  +    T   D     EGCLS+P     
Sbjct: 67  FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 126

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKR 155
             R+ +  V   +   +   I   G  A  LQHE  HL+G ++ D L+ R KR
Sbjct: 127 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKR 179


>gi|224282525|ref|ZP_03645847.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171]
 gi|310286987|ref|YP_003938245.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|313139678|ref|ZP_07801871.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171]
 gi|309250923|gb|ADO52671.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|313132188|gb|EFR49805.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171]
          Length = 217

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 5   PLVIFPDPILRRVS-RPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+ + +   +++   +N LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQQTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P           INP      D    + EGCLS   Y+A  +R   IT R+
Sbjct: 90  DHVRDDEDDPREIAEFPFHAIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDITARW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            D N +       G  A   QHE DHL+G L+ID
Sbjct: 150 TDENGKQHEERLHGWPARIFQHETDHLSGELYID 183


>gi|262183416|ref|ZP_06042837.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 204

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 18/173 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P+VI  DP+L   + P+ E I+S ++  LI +M E M +  G+GLAA QIGV  RL
Sbjct: 1   MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 60

Query: 59  VV-----------IDLQDHAHRK----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            V            +L +   R+    NP++  +    T   D     EGCLS+P     
Sbjct: 61  FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKR 155
             R+ +  V   +   +   I   G  A  LQHE  HL+G ++ D L+ R KR
Sbjct: 121 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKR 173


>gi|302187708|ref|ZP_07264381.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
 gi|330896888|gb|EGH28478.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330942465|gb|EGH45062.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330977866|gb|EGH77769.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 179

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 14  LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65
           L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +LV+   +      
Sbjct: 13  LLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERNERYP 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124
            A      + INP I   S       EGCLS+P  R  V R  + ++RY   + Q Q I 
Sbjct: 73  QAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPQGQPIE 130

Query: 125 -YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             A G  A  +QHE DHL G L+   ++   +
Sbjct: 131 RVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|56964188|ref|YP_175919.1| peptide deformylase [Bacillus clausii KSM-K16]
 gi|81678844|sp|Q5WFA2|DEF_BACSK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56910431|dbj|BAD64958.1| peptide deformylase [Bacillus clausii KSM-K16]
          Length = 183

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 18/161 (11%)

Query: 11  DPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLY 56
           +PILR+V+ P+E    + D   L+D MLE + ++             G+GLAA QIG+  
Sbjct: 12  NPILRKVAEPVELPLTDEDKQTLVD-MLEFIKNSQDPEIAEKYGLRPGVGLAAPQIGISK 70

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVR 113
           RL  I   D       M   NPK+++ S + +  +  EGCLS+  D    V R A +T+ 
Sbjct: 71  RLFAIHATDENGNLYSMGIANPKVVSHSVETNELENGEGCLSVDRDVPGLVPRRARLTIT 130

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            +D       +   G +A   QHELDHL+GI+F D +  L+
Sbjct: 131 GVDHEGNDVRMRLRGYIAIVFQHELDHLDGIMFYDRIEGLE 171


>gi|108885085|ref|NP_072768.2| peptide deformylase [Mycoplasma genitalium G37]
 gi|255660128|ref|ZP_05405537.1| peptide deformylase [Mycoplasma genitalium G37]
 gi|84626150|gb|AAC71324.2| peptide deformylase [Mycoplasma genitalium G37]
 gi|166078861|gb|ABY79479.1| peptide deformylase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 193

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 22/169 (13%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS---------------TDGIGLA 48
           K  ++F D  L  +++P E +N  I   I+  ++ M +                 GIG+A
Sbjct: 7   KTWLVFDDNAL--INKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIA 64

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIG   +L  I L D  +++   + INPKII  S++  F    EGCLS+   ++  V 
Sbjct: 65  ANQIGYWKQLFYIHLND-LNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVI 123

Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRL 153
           RS +IT++  D   + +I I A GL   CLQHE DHL G  F   ++ L
Sbjct: 124 RSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 172


>gi|28493277|ref|NP_787438.1| formylmethionine deformylase [Tropheryma whipplei str. Twist]
 gi|39930873|sp|Q83GH8|DEF_TROWT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28476318|gb|AAO44407.1| formylmethionine deformylase [Tropheryma whipplei str. Twist]
          Length = 228

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 26/168 (15%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I    +L   ++P+    S I  ++ +M   M++  G+GLA  QIG+  R+ V    
Sbjct: 38  PIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYSYT 96

Query: 65  --DHAHRKNPMVFINPKII------------------TFSDDFSVYQEGCLSIPDYRADV 104
             D  H+    V INP ++                  T  D+    +EGCLS P Y+  +
Sbjct: 97  EGDTLHQG---VAINPDLLIPKGVPKRQTNKQQANNSTSCDEPD--REGCLSFPGYQFPL 151

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +R+  +T+   D N +   ++A G LA   QHE DHL G L++D L++
Sbjct: 152 ERAPQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRLAQ 199


>gi|66047008|ref|YP_236849.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
 gi|63257715|gb|AAY38811.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 179

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 14  LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65
           L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +LV+   +      
Sbjct: 13  LLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERNERYP 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124
            A      + INP I   S       EGCLS+P  R  V R  + ++RY   + Q Q I 
Sbjct: 73  EAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPQGQPIE 130

Query: 125 -YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             A G  A  +QHE DHL G L+   ++   +
Sbjct: 131 RVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|298252788|ref|ZP_06976582.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
 gi|297533152|gb|EFH72036.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
          Length = 162

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR     I +I   + +L+D++LE +      GL+A QIGV +R   
Sbjct: 1   MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP I     +     EGCLS+P      +R+ +     +D + +
Sbjct: 61  YNINGRIG-----YILNPVIEELKGE-QYDDEGCLSVPGLWYKTRRANYARACGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             ++  +GL+A  +QHE DHL+G +++D   RL++D+  + + +L
Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLD---RLEKDVRRQALREL 156


>gi|152976388|ref|YP_001375905.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025140|gb|ABS22910.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98]
          Length = 208

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +PILR V+  ++   + +    +  M+E + ++             GIGLAA QIG+  R
Sbjct: 36  NPILRTVAEEVQLPASEEDTQTLKEMIEFVINSQNPEMVEKYNLRPGIGLAAPQIGISKR 95

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI----PDYRADVKRSAFIT 111
           ++ I + D           NPKII+ S +  +    EGCLS+    P Y   V R A IT
Sbjct: 96  MIAIHVTDTNETLYSYALFNPKIISHSVERTYLPAGEGCLSVDREVPGY---VPRYARIT 152

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    + +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 153 VKATTVDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINQ 193


>gi|153938041|ref|YP_001390224.1| putative peptide deformylase [Clostridium botulinum F str.
           Langeland]
 gi|152933937|gb|ABS39435.1| putative peptide deformylase [Clostridium botulinum F str.
           Langeland]
 gi|295318318|gb|ADF98695.1| putative peptide deformylase [Clostridium botulinum F str. 230613]
          Length = 166

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M  KP+++  D IL R+S+ I+K N D    ++N + + +    +  G G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISKKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  H      FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKTH-----YFINPILEFIGEDTFYIWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K  S
Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRARDLKSFRINKNKS 164


>gi|326402613|ref|YP_004282694.1| peptide deformylase [Acidiphilium multivorum AIU301]
 gi|325049474|dbj|BAJ79812.1| peptide deformylase [Acidiphilium multivorum AIU301]
          Length = 184

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 8/147 (5%)

Query: 12  PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD----- 65
           P+L   + P+ +    +I  L+ +M E +    G+GLAA Q+ V  RL +  + +     
Sbjct: 12  PVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLFIYRVPESRAGG 71

Query: 66  --HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             H   +     INP+++    +     EGCLSIP   A V R+A +T+R MD       
Sbjct: 72  GEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTLRAMDATGAPFS 131

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150
             A G  A  +QHE DHL+GIL+   L
Sbjct: 132 REAAGFHARVIQHEADHLDGILYPQRL 158


>gi|2507258|sp|P47352|DEF_MYCGE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
          Length = 216

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 22/169 (13%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS---------------TDGIGLA 48
           K  ++F D  L  +++P E +N  I   I+  ++ M +                 GIG+A
Sbjct: 30  KTWLVFDDNAL--INKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIA 87

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIG   +L  I L D  +++   + INPKII  S++  F    EGCLS+   ++  V 
Sbjct: 88  ANQIGYWKQLFYIHLND-LNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVI 146

Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRL 153
           RS +IT++  D   + +I I A GL   CLQHE DHL G  F   ++ L
Sbjct: 147 RSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 195


>gi|306822699|ref|ZP_07456077.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|309800930|ref|ZP_07695062.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
 gi|304554244|gb|EFM42153.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|308222466|gb|EFO78746.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
          Length = 161

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP ++  +       EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNIDGKIG-----YVLNP-VLEETSGEQYGDEGCLSVPGLWYKTRRADYAQVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             ++   G++   LQHE DHL+G +++D L + +R    + M
Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYM 156


>gi|229162908|ref|ZP_04290865.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           R309803]
 gi|228620790|gb|EEK77659.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           R309803]
          Length = 181

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           +PILR V+  +    + +  N +  M+E V+ S D           GIGLAA QIG+  +
Sbjct: 9   NPILRNVAEEVSIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKK 68

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S +  +    EGCLS+    P Y   V R   IT
Sbjct: 69  MIAVHVTDTNGTLYSHALFNPKIISHSVERTYLPNGEGCLSVDRDVPGY---VPRYTRIT 125

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 126 VKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166


>gi|226361306|ref|YP_002779084.1| peptide deformylase [Rhodococcus opacus B4]
 gi|254767598|sp|C1B0D9|DEF_RHOOB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|226239791|dbj|BAH50139.1| peptide deformylase [Rhodococcus opacus B4]
          Length = 196

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 9/155 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I  DP+L   +  + +  +++  LI +M + M + +G+GLAA Q+G+  RL V D  
Sbjct: 5   PIRIVGDPVLHEPTETVSESPAELSELIADMYDTMDAANGVGLAANQVGIPLRLFVYDCP 64

Query: 65  DHAHRKNPM----VFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115
           D      P       +NP + T     ++       EGCLS+P  +    R+ +  V   
Sbjct: 65  DVDETGKPFRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGRAEWAKVTGT 124

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           D +     I      A  LQHE+ HL+G L++D L
Sbjct: 125 DADGNAVEIEGRDFFARMLQHEVGHLDGFLYVDML 159


>gi|311742536|ref|ZP_07716345.1| peptide deformylase [Aeromicrobium marinum DSM 15272]
 gi|311314164|gb|EFQ84072.1| peptide deformylase [Aeromicrobium marinum DSM 15272]
          Length = 203

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+  +  P++ R    +   + D+  L+ +M+  MY+ +G+GLAA Q+GV  ++ V D 
Sbjct: 16  RPITRWGTPVMHRELADVTTFDEDLRVLVRDMVATMYAANGVGLAANQVGVDLKVFVFDC 75

Query: 64  QDHAHRKNPMVFINPKIITFS----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            D    +   V  NP ++T             EGCLS+P       R     V   D + 
Sbjct: 76  PDEDSERVTGVVCNP-VLTLPALGDRRLDDDDEGCLSLPGAFTTCARPDAAHVSGFDEHG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +       GLLA CLQHE DHL G +F D +    R  + K   ++ +
Sbjct: 135 EPVEFTGSGLLARCLQHETDHLFGTVFGDRVPERSRKKLYKTHREVAE 182


>gi|159040197|ref|YP_001539450.1| formylmethionine deformylase [Salinispora arenicola CNS-205]
 gi|157919032|gb|ABW00460.1| formylmethionine deformylase [Salinispora arenicola CNS-205]
          Length = 187

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 6/147 (4%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHAH 68
           P  +L R    ++    + + L  +++  M  + G +GLAA QIGV  R+  +D+  HA 
Sbjct: 30  PATVLSRAGGDVDPTAEETVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAVDVTGHAK 89

Query: 69  RK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR-YMDCNAQHQII 124
                   V  N  ++  S  + V +EGC+S+PD   DVKR+  + V   +    +   +
Sbjct: 90  AAIVHGAFVLCNAVVVAASR-WKVGREGCMSVPDLTGDVKRAGQLVVEGELPATGKAVRL 148

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
             +   A  LQHE+DH  G+LF+D ++
Sbjct: 149 VTNAFEARALQHEIDHCAGLLFLDRVA 175


>gi|330949875|gb|EGH50135.1| peptide deformylase [Pseudomonas syringae Cit 7]
          Length = 179

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 14  LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65
           L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +LV+   +      
Sbjct: 13  LLRIAPPVPADMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERNERYP 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124
            A      + INP I   S       EGCLS+P  R  V R  + ++RY   + Q Q I 
Sbjct: 73  QAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPQGQPIV 130

Query: 125 -YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             A G  A  +QHE DHL G L+   ++   +
Sbjct: 131 RVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|83719851|ref|YP_442547.1| peptide deformylase [Burkholderia thailandensis E264]
 gi|167581474|ref|ZP_02374348.1| peptide deformylase [Burkholderia thailandensis TXDOH]
 gi|167619583|ref|ZP_02388214.1| peptide deformylase [Burkholderia thailandensis Bt4]
 gi|257138756|ref|ZP_05587018.1| peptide deformylase [Burkholderia thailandensis E264]
 gi|83653676|gb|ABC37739.1| polypeptide deformylase [Burkholderia thailandensis E264]
          Length = 177

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68
           DP L  V+RP+E  N+ ++  L+ +M E M+  +G GLAA QIGV  ++++        +
Sbjct: 10  DPRLLEVARPVESFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGSSERY 69

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P     V +NP +     D     EGCLS+P  R  V R   +     D        
Sbjct: 70  PEAPPVPETVLVNPSVEYLPPDMEDGWEGCLSVPGLRGVVSRYRRVRYSGFDQYGAKLER 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 IAEGFHARVVQHEYDHLIGKLY 151


>gi|294660577|ref|NP_853423.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)]
 gi|298286800|sp|Q7NAK8|DEF_MYCGA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|284812240|gb|AAP56991.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)]
 gi|284930920|gb|ADC30859.1| peptide deformylase [Mycoplasma gallisepticum str. R(high)]
          Length = 196

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 16/165 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53
           LV   +P +R V   ++  ++ +++++ID ML  +  +            GIG+AA Q+G
Sbjct: 12  LVTDDNPKMREVCTEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIP-DYRADVKRSAFI 110
           +  R   +   D   +++  + INP+ I  + +  +    EGCLS+P D    V RS  +
Sbjct: 72  LNQRFFYVHFTDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++  D   Q  + I A GLLA CLQHE+DHL G  + D ++ +K
Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176


>gi|296167940|ref|ZP_06850084.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896930|gb|EFG76556.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 197

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++P+       + +D+  LI +M + M +  G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTQPVPVGADGSLPADLAALIADMYDTMDAAHGVGLAANQIGVG 60

Query: 56  YRLVVIDLQDHAHRKNPM--VFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   R +    V +NP     +I     D     EGCLS+P       R+ 
Sbjct: 61  LRVFVYDCADDRGRTDRRRGVVVNPVLETSQIPETMPDPDNDDEGCLSVPGESFPTGRAT 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D + +   I   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGKPVEIEGSGLFARMLQHETGHLDGFLYLDRL 162


>gi|318057272|ref|ZP_07975995.1| peptide deformylase [Streptomyces sp. SA3_actG]
 gi|318076700|ref|ZP_07984032.1| peptide deformylase [Streptomyces sp. SA3_actF]
          Length = 214

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 18/171 (10%)

Query: 5   PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  + P E     + +  L+  M   M    G+GLAA QIGV  RL V  
Sbjct: 25  PIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAV-- 82

Query: 63  LQDHA---------HRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           L+D A           + P+   V +NP      +  + + EGCLS+P ++A V R A +
Sbjct: 83  LEDPATVPEEVRRVRERAPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVV 142

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            +R  D + +       G  A  +QHE DHL+G L++D    L R + + +
Sbjct: 143 RLRAEDEHGRALDEEVRGWSARIVQHETDHLDGTLYVDRA--LPRSLTSNE 191


>gi|33862657|ref|NP_894217.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313]
 gi|39931000|sp|Q7V8G6|DEF1_PROMM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|33634573|emb|CAE20559.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT
           9313]
          Length = 192

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 16/183 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K ++   +P LR+VS  ++  + + I++LI ++ + + +  G GLAA QIGV  R+V
Sbjct: 1   MAVKEILRMGNPQLRKVSNVVDDASDELIISLIKDLQDTVKAHQGAGLAAPQIGVPLRVV 60

Query: 60  VIDLQDHAHR--KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +        R  + P +     INP +     D     EGCLS+P  R  V R + I  R
Sbjct: 61  LFGGGGPNPRYPEAPSIPQTLLINPVLTPIGSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL---------SRLKRDMITKKMSK 164
            ++ +        +G  A  +QHE DHL+G+LF D L           L+   I +K+S 
Sbjct: 121 ALNEDGFEVEHCLEGFPARVIQHECDHLDGVLFPDRLVDSASFGFTGELETAGIIEKLSS 180

Query: 165 LVQ 167
             Q
Sbjct: 181 AEQ 183


>gi|313497652|gb|ADR59018.1| Def_2 [Pseudomonas putida BIRD-1]
          Length = 178

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
           D  L R++ P+ +    ++++  LID+M E M    G+GLAA Q+G+  +LV+   +   
Sbjct: 10  DERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIFGFERSE 69

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      + +NP I   S +     EGCLS+P  R  V R   I  + +D      
Sbjct: 70  RYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQGIDPQGSPI 129

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +ADG  A  +QHE DHL G L+   +    R   T+ +   ++  D
Sbjct: 130 NRFADGFHARVVQHECDHLIGRLYPSRIQDFARFGYTEVLFPGLEASD 177


>gi|268611639|ref|ZP_06145366.1| peptide deformylase [Ruminococcus flavefaciens FD-1]
          Length = 153

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L +V +P++K +  +  L+D+M E +    G+GLAA QIG+  R+ +
Sbjct: 1   MALRKILTDKDESLHKVCKPVDKFDEKLAVLLDDMHETLDKAQGLGLAAPQIGLCRRIFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + L++          INP+ +T  +     QEGCLS P+    V R     ++  D N  
Sbjct: 61  MHLEE-----GSFECINPE-VTQKEGKQRVQEGCLSCPNVWGYVTRPMKCHLKAQDRNGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 +GL A C  HE DHL+G +F +
Sbjct: 115 WFERDFEGLGAQCTCHENDHLDGHVFTE 142


>gi|170723021|ref|YP_001750709.1| peptide deformylase [Pseudomonas putida W619]
 gi|169761024|gb|ACA74340.1| peptide deformylase [Pseudomonas putida W619]
          Length = 178

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
           D  L RV+ P+ +    ++++  LID+M E M    G+GLAA Q+G+  +LV+   +   
Sbjct: 10  DERLLRVAAPVPEHLIGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIFGFERSE 69

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      + +NP I   S +     EGCLS+P  R  V R   I+   +D      
Sbjct: 70  RYPDAEAVPQTILLNPVITPLSTEIEEGWEGCLSVPGLRGVVPRYKHISYEGIDPQGNPV 129

Query: 123 IIYADGLLATCLQHELDHLNGILF 146
              ADG  A  +QHE DHL G L+
Sbjct: 130 NRVADGFHARVVQHECDHLIGRLY 153


>gi|1361510|pir||G64211 formylmethionine deformylase homolog - Mycoplasma genitalium
          Length = 226

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 22/169 (13%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS---------------TDGIGLA 48
           K  ++F D  L  +++P E +N  I   I+  ++ M +                 GIG+A
Sbjct: 40  KTWLVFDDNAL--INKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIA 97

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIG   +L  I L D  +++   + INPKII  S++  F    EGCLS+   ++  V 
Sbjct: 98  ANQIGYWKQLFYIHLND-LNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVI 156

Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRL 153
           RS +IT++  D   + +I I A GL   CLQHE DHL G  F   ++ L
Sbjct: 157 RSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 205


>gi|172041401|ref|YP_001801115.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109]
 gi|171852705|emb|CAQ05681.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109]
          Length = 267

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 78/176 (44%), Gaps = 31/176 (17%)

Query: 5   PLVIFPDPIL----RRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           P+VI  DP+L     +V  P    N     +    I +M E M    G+GLA  Q+GV  
Sbjct: 49  PIVIAGDPVLHNPTNKVGEPDLDANGVPTEEFKKFIADMHETMDRAHGVGLAGNQVGVAK 108

Query: 57  RLVV-----IDLQDHAHR--------KNPM---VFINPKIIT------FSDDFSVYQEGC 94
           RL V     ID  +   R          PM     INP + T        D++   +EGC
Sbjct: 109 RLFVYHCPDIDGPNGEQRTEEEIAAQGGPMRRGTVINPVLETSEIPETMPDEYED-EEGC 167

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           LS+P Y     R+ +  V  +D N +   +   G  A CLQHE+ HL+G L+ D L
Sbjct: 168 LSVPGYSFPTGRADWARVTGIDENGEPVTVEGYGFFARCLQHEVGHLDGFLYTDTL 223


>gi|224283170|ref|ZP_03646492.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171]
 gi|311064448|ref|YP_003971173.1| peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313140319|ref|ZP_07802512.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171]
 gi|310866767|gb|ADP36136.1| Def Peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313132829|gb|EFR50446.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171]
          Length = 162

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   PDP+LR     I +I   +  L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRTVPDPVLRTPCETIREITPSVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +   S +     EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNINGKIG-----YVLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   GL+   LQHE DHL+G +++D L + +R    + M +
Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMRE 158


>gi|237757000|ref|ZP_04585457.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690843|gb|EEP59994.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 121

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 7/122 (5%)

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           AA Q+    R +++D     H+ N      MV  NPKI+    +  +++EGC+S+PDY  
Sbjct: 1   AAPQVNNPIRAIIVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEI-IFREGCMSVPDYTG 59

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +VKR  +I V   D N        +G  A  +QHE+DHL G +FI+ +   K D+  +K+
Sbjct: 60  NVKRFYYIKVEAQDINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKV 118

Query: 163 SK 164
            K
Sbjct: 119 YK 120


>gi|56475469|ref|YP_157058.1| peptide deformylase [Aromatoleum aromaticum EbN1]
 gi|56311512|emb|CAI06157.1| N-formylmethionyl-tRNA deformylase 2 [Aromatoleum aromaticum EbN1]
          Length = 175

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 10/154 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + L+   DP L + + P++   + ++  L+ ++ + M +  G+GLAA QIGV  ++V
Sbjct: 1   MTIRTLLRMGDPRLLQPAEPVDAFGTVELAALVVDLFDTMAAHGGVGLAAPQIGVGLQMV 60

Query: 60  VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +   +      +       V +NP I    +      EGCLS+P  R  V R + I  RY
Sbjct: 61  IFGFERSERYPDAPPVPQTVLLNPVITPLGELVEEGWEGCLSVPGLRGMVPRHSRI--RY 118

Query: 115 MDCNAQHQII--YADGLLATCLQHELDHLNGILF 146
              ++Q Q I   A+G  A  +QHE DHL G+L+
Sbjct: 119 QGADSQGQTIDRIAEGFHARVVQHECDHLAGVLY 152


>gi|37626213|gb|AAQ96588.1| hypothetical protein [Vibrio phage VP16C]
          Length = 137

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
             D+  L+D M   M +  GIGLA  Q+GVL R++V+        K     +NP I   +
Sbjct: 21  GEDVTGLVDAMTAAMTAAGGIGLAGNQLGVLKRVIVVRAP-----KFKGCIVNPVITRHT 75

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
                 +EGCLS P    D KR   ITV   D + Q   + A GL A C+QHE+DHLNG+
Sbjct: 76  SGHVNSREGCLSFPGKTVDKKRHNKITVEGFDAHWQPIKVEAKGLTAFCIQHEIDHLNGV 135


>gi|24645726|ref|NP_731494.1| CG31278 [Drosophila melanogaster]
 gi|23170931|gb|AAF54540.2| CG31278 [Drosophila melanogaster]
 gi|54650588|gb|AAV36873.1| RE57173p [Drosophila melanogaster]
 gi|220952214|gb|ACL88650.1| CG31278-PA [synthetic construct]
          Length = 238

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR+ +   P E + S +I  +++ M++V+   D +G+AA QIGV  R++ ++ +   
Sbjct: 56  DPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRI 115

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++ P               +FINP +   +     + EGC+S+  Y A+V+R   + + 
Sbjct: 116 RKELPEAVYQARQMSELPLTIFINPVLTVTNYAKLKHPEGCMSVRGYSAEVERFEGVKLT 175

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 176 GLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|330957627|gb|EGH57887.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 179

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 10/144 (6%)

Query: 20  PIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----DHAHRKNPM 73
           P E   S  +N LI +M E M+S  G+GLAA QIGV  +LV+   +       A      
Sbjct: 21  PTEMFGSSELNTLIADMFETMHSVSGVGLAAPQIGVDLQLVIFGFERNERYPQAEAVPQT 80

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY--ADGLLA 131
           + +NP I   S +     EGCLS+P  R  V R  + ++RY   + + + I   A G  A
Sbjct: 81  ILLNPVITPLSPELEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPEGKPIERIAHGFHA 138

Query: 132 TCLQHELDHLNGILFIDHLSRLKR 155
             +QHE DHL G L+   ++   +
Sbjct: 139 RVVQHECDHLIGRLYPSRITDFSK 162


>gi|303281244|ref|XP_003059914.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458569|gb|EEH55866.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 185

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 18/156 (11%)

Query: 12  PILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           P LR ++   P+  I++     LI  ML +     G+GLAA QIGV YR+ V++  +   
Sbjct: 8   PCLREIAEEVPLSSIDTAKTQELIQEMLSICRGR-GVGLAAPQIGVPYRIFVLEDTEEGM 66

Query: 67  ---------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                    A  + P    V INP +   S+  + + EGCLS+  YR  V+R   + V  
Sbjct: 67  SDVSKKDLEAMDRKPFAAKVVINPVVTPVSNLSAAFFEGCLSVQGYRGLVRRYLEVRVTG 126

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              +       A G  A  +QHE+DHLNG+L++D +
Sbjct: 127 YGGDGSPVDFVARGWQARIVQHEMDHLNGVLYVDRM 162


>gi|322805193|emb|CBZ02757.1| peptide deformylase related protein [Clostridium botulinum H04402
           065]
          Length = 166

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 11/169 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M  KP+++  D IL R+S  I+K N D    ++N + + +    +  G G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  H      FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKTH-----YFINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            + + +   +Y +G L+   QHE DHL+GIL +     LK   I K  S
Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164


>gi|89099513|ref|ZP_01172388.1| peptide deformylase [Bacillus sp. NRRL B-14911]
 gi|89085666|gb|EAR64792.1| peptide deformylase [Bacillus sp. NRRL B-14911]
          Length = 184

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 3/112 (2%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-Y 100
           GIGLAA QI  L R++ + + D   +       NPKI++ S +  F    EGCLS+ + +
Sbjct: 58  GIGLAAPQIDCLKRMIAVHVTDTDGKLYSFALFNPKIVSHSVEKAFLTSGEGCLSVDEPF 117

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A IT++  D + +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 118 PGFVPRYARITLKAFDIDGREVKLRLRGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|116670740|ref|YP_831673.1| peptide deformylase [Arthrobacter sp. FB24]
 gi|116610849|gb|ABK03573.1| Peptide deformylase [Arthrobacter sp. FB24]
          Length = 226

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 12/149 (8%)

Query: 12  PILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV------IDL 63
           P+LR+ + P E     +++  LI  M EVM+   G+GLAA Q+G+  +L V      +D 
Sbjct: 37  PVLRQQAAPYEGQLDGTELAALIALMREVMHDAPGVGLAAPQLGIPLQLAVLEDQYDVDA 96

Query: 64  QDHAHR-KNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +  A R ++P+ F   INP         + + EGCLS+   +A V R   + + + D   
Sbjct: 97  ETAAVRHRSPLEFFAVINPSYSPLGTGTAAFYEGCLSLQGLQAVVSRHETVRLDFTDPGG 156

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
             +     G  A  +QHE DHL GIL++D
Sbjct: 157 TRRQQDFFGWQARIVQHEADHLQGILYVD 185


>gi|168178266|ref|ZP_02612930.1| putative peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|182670881|gb|EDT82855.1| putative peptide deformylase [Clostridium botulinum NCTC 2916]
          Length = 166

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M  KP+++  D IL R+S  I+K N D    ++N + + +    +  G G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEKIQKSNLDKAEQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             R++ + L D  H      FINP I+ F   D F ++ + C+S P     V+R     V
Sbjct: 61  SVRIIYMHLGDKTH-----YFINP-ILEFIGEDTFHLWDD-CMSFPGLEVYVERHKKCKV 113

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Y + N +   +Y +G L+   QHE DHL+GIL +     LK   I K  S
Sbjct: 114 TYKNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164


>gi|297720233|ref|NP_001172478.1| Os01g0636600 [Oryza sativa Japonica Group]
 gi|255673494|dbj|BAH91208.1| Os01g0636600 [Oryza sativa Japonica Group]
          Length = 198

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 58/99 (58%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 84  VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 143

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
                  +V +NP +   S    VY+E CLS P   A+V
Sbjct: 144 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANV 182


>gi|194902258|ref|XP_001980657.1| GG17276 [Drosophila erecta]
 gi|190652360|gb|EDV49615.1| GG17276 [Drosophila erecta]
          Length = 238

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DPILR+ +   P E ++S +I  +++ M++V+   + +G+AA QIGV  R++ ++ +   
Sbjct: 56  DPILRQQAALVPKEHLDSPEIKAIVERMVKVLRKFECVGIAAPQIGVSLRIIAMEFKGRV 115

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++ P               V INP +   +     + EGC+S+  Y A+V+R   + + 
Sbjct: 116 RKELPEVVYQARQMSELPLTVLINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGVKLT 175

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 176 GLDQQGIQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|310827878|ref|YP_003960235.1| peptide deformylase [Eubacterium limosum KIST612]
 gi|308739612|gb|ADO37272.1| peptide deformylase [Eubacterium limosum KIST612]
          Length = 148

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 11/151 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLV 59
           M K PL    DP+L++  + ++ ++  I +L++ M+  +  T G   LAA Q+G+L +LV
Sbjct: 1   MPKLPLHYNDDPVLKQKCQSVQVVDDSIRSLLNAMMNTLQLTPGAAALAANQVGILLQLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID   + H K     +NP+I+  ++      E CLS P       R   + VR +D N 
Sbjct: 61  VIDYAGY-HLK----LVNPEILD-TEGSRECMESCLSFPGRHIMTLRPRAVRVRALDENG 114

Query: 120 QHQIIYAD--GLLATCLQHELDHLNGILFID 148
              +IY D  G +A CL HE+DHL GI+FI+
Sbjct: 115 V--VIYLDVSGEMAKCLCHEIDHLRGIVFIE 143


>gi|104782988|ref|YP_609486.1| peptide deformylase [Pseudomonas entomophila L48]
 gi|95111975|emb|CAK16702.1| peptide deformylase 2 [Pseudomonas entomophila L48]
          Length = 178

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 8/141 (5%)

Query: 14  LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           L R++ P+ +    ++++  LID+M E M    G+GLAA QIG+  +LV+   +      
Sbjct: 13  LLRIAPPVPEHMLGSAELRQLIDDMFETMAHVGGVGLAAPQIGIDLQLVIFGFERSERYP 72

Query: 71  NP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +       + +NP I   S +     EGCLS+P  R  V R   I+   +D +      +
Sbjct: 73  DAEAVPRTILLNPVITPMSTEVEDGWEGCLSVPGLRGVVPRYKHISYTGVDPDGNPIDRF 132

Query: 126 ADGLLATCLQHELDHLNGILF 146
           ADG  A  +QHE DHL G L+
Sbjct: 133 ADGFHARVVQHECDHLIGRLY 153


>gi|284931676|gb|ADC31614.1| peptide deformylase [Mycoplasma gallisepticum str. F]
          Length = 196

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 16/165 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53
           LV   +P +R V   ++  ++ +++++ID ML  +  +            GIG+AA Q+G
Sbjct: 12  LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIP-DYRADVKRSAFI 110
           +  R   +   D   +++  + INP+ I  + +  +    EGCLS+P D    V RS  +
Sbjct: 72  LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++  D   Q  + I A GLLA CLQHE+DHL G  + D ++ +K
Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176


>gi|115352107|ref|YP_773946.1| peptide deformylase [Burkholderia ambifaria AMMD]
 gi|115282095|gb|ABI87612.1| peptide deformylase [Burkholderia ambifaria AMMD]
          Length = 177

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 10/158 (6%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           DP L  V++P+ + ++ ++  ++ +M E M+  +G GLAA QIG+  +L++     +   
Sbjct: 10  DPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLIIFGFGSNNRY 69

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A      V INPK+     D     EGCLS+P  R  V R A   VRY   +     I
Sbjct: 70  PDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYA--KVRYSGYDQFGAKI 127

Query: 125 --YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              A+G  A  +QHE DHL G L+   ++   R   T+
Sbjct: 128 DRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165


>gi|167035061|ref|YP_001670292.1| peptide deformylase [Pseudomonas putida GB-1]
 gi|166861549|gb|ABY99956.1| peptide deformylase [Pseudomonas putida GB-1]
          Length = 178

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 8/168 (4%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
           D  L R++ P+ +     +++  LID+M E M    G+GLAA QIG+  +LV+   +   
Sbjct: 10  DERLLRIAPPVPEHMLGTAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIFGFERSE 69

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      + +NP I   S +     EGCLS+P  R  V R   I    +D      
Sbjct: 70  RYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYEGIDPQGNPI 129

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +ADG  A  +QHE DHL G L+   +    +   T+ +   +++ D
Sbjct: 130 NRFADGFHARVVQHECDHLIGRLYPSRIQDFAKFGYTEVLFPGLEVSD 177


>gi|310287535|ref|YP_003938793.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|309251471|gb|ADO53219.1| Peptide deformylase [Bifidobacterium bifidum S17]
          Length = 162

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   PDP+LR     I +I   +  L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRTVPDPVLRTPCETIREITPAVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +   S +     EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNINGKIG-----YVLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   GL+   LQHE DHL+G +++D L + +R    + M +
Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMRE 158


>gi|71737618|ref|YP_273728.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558171|gb|AAZ37382.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320325402|gb|EFW81467.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 179

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
           D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +LV+   +   
Sbjct: 10  DERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSE 69

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      + +NP I   S       EGCLS+P  R  V R  + ++RY   + + Q
Sbjct: 70  RYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNR--YQSIRYEGFDPEGQ 127

Query: 123 II--YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +   A G  A  +QHE DHL G L+   ++   +
Sbjct: 128 PVERVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|242373503|ref|ZP_04819077.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1]
 gi|242348866|gb|EES40468.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1]
          Length = 162

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +K LV    PIL++   P+ + + ++  L+ ++ + +Y+ +   + A QI V  R+ +
Sbjct: 1   MTRKKLVKSSHPILKKEIAPVTEFDENLSLLLKDLEDTLYAEEAAAICAPQINVNQRVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++        +  INP + + SD+     EG +++P+   +V RS  I ++  D N  
Sbjct: 61  IDME----MDGLLQLINPVVQSQSDEMITDLEGSITLPNTFGEVNRSKMIVIQSSDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DHLNGILF +  +RL
Sbjct: 117 QVELTAYDDVARMILHMIDHLNGILFTEKANRL 149


>gi|228992712|ref|ZP_04152638.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           pseudomycoides DSM 12442]
 gi|228998756|ref|ZP_04158342.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock3-17]
 gi|229006272|ref|ZP_04163956.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock1-4]
 gi|228754918|gb|EEM04279.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock1-4]
 gi|228760931|gb|EEM09891.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock3-17]
 gi|228767044|gb|EEM15681.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           pseudomycoides DSM 12442]
          Length = 184

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSR--PIEKINSDIMNLID-----------NMLEVMYSTDGIGLAAVQIGVLYR 57
           +PILR V+   P+     DI  L +            M+E      GIG+AA QIG+  R
Sbjct: 12  NPILRAVAEEVPLPASEEDIRTLKEMIELVINSQHPEMVEKYNLRPGIGIAAPQIGISKR 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +     EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDTNETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    + +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINQ 169


>gi|315658500|ref|ZP_07911372.1| peptide deformylase [Staphylococcus lugdunensis M23590]
 gi|315496829|gb|EFU85152.1| peptide deformylase [Staphylococcus lugdunensis M23590]
          Length = 162

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+    P+L+R ++ + + +  +  L+ ++ + +Y  +   L A QIG+  ++ +
Sbjct: 1   MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++     +  +  INP II  SD+  +  EG +S+PD   +V RS  I V+  D    
Sbjct: 61  VDME----MEGLLQLINPTIIKASDEQVIDLEGSISLPDIYGEVARSQMIVVQSYDVQGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              + A   +A  +QH +D +NGI F +   ++  D
Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKILTD 152


>gi|52345870|ref|NP_001004979.1| peptide deformylase (mitochondrial) [Xenopus (Silurana) tropicalis]
 gi|49522476|gb|AAH75522.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis]
 gi|89268627|emb|CAJ82379.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis]
          Length = 239

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSR--PIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR  +   P  +I+  D   +++ M+ V+ +   +GL+A QIGV  R++ +      
Sbjct: 68  DPVLRCTAARVPCAQISHPDTQAVVNQMVRVLRAGCCVGLSAPQIGVPLRILAVAFPQQM 127

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           ++  P               +FINP++         + EGC S+  + A V R   + ++
Sbjct: 128 YQAVPPEVRNAREMSPFPLQIFINPEMRIVDSRTLSFPEGCSSVQGFSAVVPRYYAVELQ 187

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            M+   +H    A G  A  +QHE+DHL+G+L+ID +
Sbjct: 188 GMNPKGEHVTWQAQGWAARIIQHEMDHLDGVLYIDKM 224


>gi|308801120|ref|XP_003075341.1| Peptide deformylase (ISS) [Ostreococcus tauri]
 gi|116061895|emb|CAL52613.1| Peptide deformylase (ISS) [Ostreococcus tauri]
          Length = 243

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 33/180 (18%)

Query: 3   KKPLVIFPDPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           ++ +V    P LR  ++   P E  +++I  LI  M+ VM +  G+GLAA Q+G+  R++
Sbjct: 33  QRDVVQAGAPALRDRAKEIDPREIDSAEIQELIGEMVRVMRAR-GVGLAAPQLGIRKRVI 91

Query: 60  VIDLQDH-----------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           V++  +            + ++ P    V INP +    D  +++ EGCLS+  YRA   
Sbjct: 92  VLEDTEEGMSDSSAEELASQKRAPFACTVIINPTLERVGDASAIFFEGCLSVAGYRA--- 148

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKR--DMITKKM 162
                            I  A G  A  LQHELDHL+G+L+ D + SR  R  DM+++ +
Sbjct: 149 ---------CAATGNRSIYIATGWQARILQHELDHLDGVLYTDRMESRTFRRVDMLSEPL 199


>gi|7109689|gb|AAF36760.1| polypeptide deformylase [Mycoplasma gallisepticum]
 gi|28212477|gb|AAO37616.1| polypeptide deformylase [Mycoplasma gallisepticum]
          Length = 204

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 16/165 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53
           LV   +P +R V   ++  ++ +++++ID ML  +  +            GIG+AA Q+G
Sbjct: 20  LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 79

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIP-DYRADVKRSAFI 110
           +  R   +   D   +++  + INP+ I  + +  +    EGCLS+P D    V RS  +
Sbjct: 80  LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 139

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++  D   Q  + I A GLLA CLQHE+DHL G  + D ++ +K
Sbjct: 140 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 184


>gi|325279635|ref|YP_004252177.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
 gi|324311444|gb|ADY31997.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
          Length = 220

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 30/135 (22%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRA 102
           G+G+AA Q+G+  RL+ +  Q +     P  F INP I++ S++ S+ +EGCLS+PD   
Sbjct: 85  GVGIAAPQVGISRRLIAV--QRYDKPGAPFEFYINPGIVSASEEQSLGKEGCLSVPDVVG 142

Query: 103 DVKRSAFITVRYM---------------------DCNAQHQIIYAD------GLLATCLQ 135
           +V RS  I VRY+                     +   +++  +        G  A   Q
Sbjct: 143 EVWRSNEIVVRYIPELTSIKRMLSREKTDSTFKFEVKVEYRNTWEPVCDTIRGFTAVIFQ 202

Query: 136 HELDHLNGILFIDHL 150
           HE+DHLNGILF D +
Sbjct: 203 HEIDHLNGILFTDKM 217


>gi|212716218|ref|ZP_03324346.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660730|gb|EEB21305.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM
           16992]
          Length = 218

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 15/157 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+ +   E   S   +  LI+ M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
             DH    +             V INP       +   + EGCLS   Y+A  KR   IT
Sbjct: 90  --DHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDIT 147

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            R+ D + +    +  G  A   QHE DHL+G L+ID
Sbjct: 148 ARWQDEDGKQHEEHLHGWPARIFQHETDHLSGELYID 184


>gi|323488852|ref|ZP_08094092.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2]
 gi|323397550|gb|EGA90356.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2]
          Length = 188

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 10/130 (7%)

Query: 28  IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS-- 84
           ++N  D+ L   Y    G+G+AA Q+    R+  +   D+      +V  NPKI++ S  
Sbjct: 41  VVNSQDDELAEKYDLRPGVGIAAPQVNQAKRIFALHFDDNTGENLSLVVFNPKIVSHSVE 100

Query: 85  DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
             +    EGCLS+    P Y   V R A IT++ ++ N +   +   GL A   QHELDH
Sbjct: 101 KTYLAAGEGCLSVDRAVPGY---VPRYARITIKALNINGEEIKMRLKGLPAIAFQHELDH 157

Query: 141 LNGILFIDHL 150
           LNG++F DH+
Sbjct: 158 LNGVMFFDHI 167


>gi|283456090|ref|YP_003360654.1| peptide deformylase [Bifidobacterium dentium Bd1]
 gi|283102724|gb|ADB09830.1| def Peptide deformylase [Bifidobacterium dentium Bd1]
          Length = 153

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PDP+LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R    ++     
Sbjct: 1   MPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNIDGKI- 59

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                  +NP ++  +       EGCLS+P      +R+ +  VR +D +    ++   G
Sbjct: 60  ----GYVLNP-VLEETSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHG 114

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           ++   LQHE DHL+G +++D L + +R    + M    Q
Sbjct: 115 IMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRNHRQ 153


>gi|168184095|ref|ZP_02618759.1| putative peptide deformylase [Clostridium botulinum Bf]
 gi|237794165|ref|YP_002861717.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|182672791|gb|EDT84752.1| putative peptide deformylase [Clostridium botulinum Bf]
 gi|229261785|gb|ACQ52818.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 166

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 11/169 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M  KP+++  D IL R+S  I+K N D    ++N + + +    +  G G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  +      FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKTY-----YFINPILEFIGDDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K  S
Sbjct: 116 KNLNWEDCEMYLEGGLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164


>gi|66806299|ref|XP_636872.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4]
 gi|60465273|gb|EAL63366.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4]
          Length = 243

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 55/206 (26%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST----DGIGLAAVQIGVLYR 57
           + K +V   + +LR  + P  K   + +  ++ +LE MY       G G+AA QIGV  +
Sbjct: 6   ISKNIVKVGNKLLREKALPWSKEELNDVRRVEKLLEKMYKEMKDCTGTGIAAPQIGVNKQ 65

Query: 58  LVVIDLQDHAHRKNP----MVFINPKII------------TFSD------------DFSV 89
           L +++L        P      F NPKI             T +D            + S 
Sbjct: 66  LFLLELPSQEGLNCPNFPLTAFFNPKIKLIDQDVTKPSRRTITDFKKFLHGSEKLLNLSQ 125

Query: 90  YQ-----------------------EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
           Y+                       E CLS+P+  A V+RS    + ++D   + +II A
Sbjct: 126 YKTKFQTEESTLPTIPTENNTITMLESCLSVPNIFAHVQRSKRCIITFLDITGKERIIEA 185

Query: 127 DGLLATCLQHELDHLNGILFIDHLSR 152
           DG+LA C QHE DHL G +FID + +
Sbjct: 186 DGILAACFQHEYDHLLGKIFIDRIDK 211


>gi|26991243|ref|NP_746668.1| peptide deformylase [Pseudomonas putida KT2440]
 gi|32363154|sp|Q88EA7|DEF2_PSEPK RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|24986296|gb|AAN70132.1|AE016653_3 polypeptide deformylase [Pseudomonas putida KT2440]
          Length = 178

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 8/144 (5%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
           D  L R++ P+ +    ++++  LID+M E M    G+GLAA Q+G+  +LV+   +   
Sbjct: 10  DERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIFGFERSE 69

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      + +NP I   S +     EGCLS+P  R  V R   I  + +D      
Sbjct: 70  RYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQGIDPQGSPI 129

Query: 123 IIYADGLLATCLQHELDHLNGILF 146
             +ADG  A  +QHE DHL G L+
Sbjct: 130 NRFADGFHARVVQHECDHLIGRLY 153


>gi|171742295|ref|ZP_02918102.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC
           27678]
 gi|171277909|gb|EDT45570.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC
           27678]
          Length = 242

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 72/157 (45%), Gaps = 15/157 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+ +   E   S   +  LID M   M    G+GLAA QIG+   L V+ 
Sbjct: 54  PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVV- 112

Query: 63  LQDHAHRKN----------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            +DH    +          P  V INP           + EGCLS   Y+A  KR   IT
Sbjct: 113 -EDHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDIT 171

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            R+ D +      +  G  A   QHE DHL+G L+ID
Sbjct: 172 ARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYID 208


>gi|306822240|ref|ZP_07455622.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|309802249|ref|ZP_07696357.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
 gi|304554622|gb|EFM42527.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|308221132|gb|EFO77436.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
          Length = 242

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 71/155 (45%), Gaps = 11/155 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           P+V   +P+LR+ +   E   S   +  LID M   M    G+GLAA QIG+   L V+ 
Sbjct: 54  PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVVE 113

Query: 62  ----DLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
               D  D   R+       V INP           + EGCLS   Y+A  KR   IT R
Sbjct: 114 DHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDITAR 173

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           + D +      +  G  A   QHE DHL+G L+ID
Sbjct: 174 WQDEDGNRHEEHLHGWPARIFQHETDHLSGELYID 208


>gi|229086539|ref|ZP_04218711.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-44]
 gi|228696856|gb|EEL49669.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-44]
          Length = 184

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 22/161 (13%)

Query: 11  DPILRRVSR--PIEKINSDIMNLID-----------NMLEVMYSTDGIGLAAVQIGVLYR 57
           +PILR V+   P+    +D+  L +            M+E      GIG+AA QIG+  R
Sbjct: 12  NPILRAVAEEVPLPASEADLRTLKEMIEFVINSQNPEMVEKYNLRPGIGIAAPQIGISKR 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFIT 111
           ++ + + D           NPKII+ S + +     EGCLS+    P Y   V R   IT
Sbjct: 72  MIAVHVTDANETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGY---VPRYTRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+    + +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 129 VKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINQ 169


>gi|148259391|ref|YP_001233518.1| peptide deformylase [Acidiphilium cryptum JF-5]
 gi|146401072|gb|ABQ29599.1| peptide deformylase [Acidiphilium cryptum JF-5]
          Length = 209

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 8/147 (5%)

Query: 12  PILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD----- 65
           P+L   + P+ +    +I  L+ +M E +    G+GLAA Q+ V  RL +  + +     
Sbjct: 37  PVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLFIYRVPESRAGG 96

Query: 66  --HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             H   +     INP+++    +     EGCLSIP   A V R+A +T+R +D       
Sbjct: 97  GEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTLRAIDATGAPFS 156

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150
             A G  A  +QHE DHL+GIL+   L
Sbjct: 157 REAAGFHARVIQHEADHLDGILYPQRL 183


>gi|314933389|ref|ZP_07840754.1| peptide deformylase [Staphylococcus caprae C87]
 gi|313653539|gb|EFS17296.1| peptide deformylase [Staphylococcus caprae C87]
          Length = 162

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL++  + + + +  + +L+ ++ + +Y+ +   ++A QIGV  R+ +
Sbjct: 1   MTVKKLVKSTHPILKKEIKTVNQYDDQLKSLLQDLEDTLYAEEAAAISAPQIGVNQRVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  INP I + SD+     EG +++P+   +V RS  I V+  D N  
Sbjct: 61  IDME----LEGLLQLINPVIKSHSDEEITDLEGSITLPNIFGEVTRSKMIVVQCNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DHLNGILF +  +R+
Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTEKANRI 149


>gi|283456600|ref|YP_003361164.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1]
 gi|283103234|gb|ADB10340.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1]
          Length = 218

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 72/157 (45%), Gaps = 15/157 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+ +   E   S   +  LID M   M    G+GLAA QIG+   L V+ 
Sbjct: 30  PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVV- 88

Query: 63  LQDHAHRKN----------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            +DH    +          P  V INP           + EGCLS   Y+A  KR   IT
Sbjct: 89  -EDHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDIT 147

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            R+ D +      +  G  A   QHE DHL+G L+ID
Sbjct: 148 ARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYID 184


>gi|325963300|ref|YP_004241206.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469387|gb|ADX73072.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 226

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-- 60
           P+V    P LR+ +   +   S +    LI  M EVM+   G+GLAA Q+G+  ++ V  
Sbjct: 30  PIVQAGHPALRQRAAAYDGQLSAVQLDGLISLMREVMHEAPGVGLAAPQLGIPLQIAVVE 89

Query: 61  ----IDLQDHAHRK-NPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
               +D +  A RK +P+ F   +NP+      D + + EGCLS+   +A V R   + +
Sbjct: 90  DQYDVDPEAAALRKRSPLEFLAIVNPRYTPLGTDMASFYEGCLSLNGLQAVVARPEKVLL 149

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            +   +        +G  A  +QHE DHLNG+L++D
Sbjct: 150 EFQAPDGSGVQREFEGWQARIVQHETDHLNGVLYVD 185


>gi|118465399|ref|YP_883852.1| peptide deformylase [Mycobacterium avium 104]
 gi|118166686|gb|ABK67583.1| polypeptide deformylase [Mycobacterium avium 104]
          Length = 177

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 23  KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKNPMVFINPKI 80
            + +D++ LI +M + M +  G+GLAA QIGV  R+ V D  D      +   V +NP +
Sbjct: 8   SLPADLVKLIADMYDTMDAAHGVGLAANQIGVGLRVFVYDCADDRGLTERRRGVVVNPVL 67

Query: 81  ITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
            T        D     EGCLS+P       R+++  V  +D +     I   GL A  LQ
Sbjct: 68  ETSEIPETMPDPDTDDEGCLSVPGESFPTGRASWARVTGLDADGSPVSIEGHGLFARMLQ 127

Query: 136 HELDHLNGILFIDHL 150
           HE  HL+G L++D L
Sbjct: 128 HETGHLDGFLYLDRL 142


>gi|220912690|ref|YP_002487999.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
 gi|219859568|gb|ACL39910.1| formylmethionine deformylase [Arthrobacter chlorophenolicus A6]
          Length = 226

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 5   PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V    P LR+ + P +       +  LI+ M +VM+   G+GLAA Q+G+  +L V++
Sbjct: 30  PIVQAGHPALRQKAAPFDGQITPEQLARLIELMRQVMHEAPGVGLAAPQLGIPLQLAVLE 89

Query: 63  LQ---DHA----HRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            +   DH       + P+ F   +NP       D + + EGCLS+   +A V R   + +
Sbjct: 90  DKYDVDHEAAALRNRAPLDFLAILNPSYTPAGPDRAAFYEGCLSLNGLQAVVSRPQAVLL 149

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            ++  +   +     G  A  +QHE DHLNGIL++D
Sbjct: 150 DFVRPDGGAERRGFSGWQARIVQHETDHLNGILYVD 185


>gi|240168904|ref|ZP_04747563.1| peptide deformylase [Mycobacterium kansasii ATCC 12478]
          Length = 197

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 16/164 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++PI       + +D+  LI +M + M +  G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTPTKPIPVGADGSLPADLPQLITDMYDTMDAAYGVGLAANQIGHG 60

Query: 56  YRLVVIDLQDH----AHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKR 106
            R+ V D  +     A R+   V INP + T        D    +EGCLS+P       R
Sbjct: 61  LRVFVYDCAEDRGKTARRRG--VVINPVLETSEIPETMPDPDNDEEGCLSVPGESFPTGR 118

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           + +  V  +  +     I   GL A  LQHE  HL+G L++D L
Sbjct: 119 AKWARVTGLGADGAPVDIEGTGLFARMLQHETGHLDGFLYLDCL 162


>gi|257486818|ref|ZP_05640859.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330988665|gb|EGH86768.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331010288|gb|EGH90344.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 179

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 14  LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65
           L R++ P+      +S +  LI +M E M+S  G+GLAA QIG+  +LV+   +      
Sbjct: 13  LLRIAPPVPADMFGSSKLNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSERYP 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII- 124
            A      + +NP I   S       EGCLS+P  R  V R  + ++RY   + + Q + 
Sbjct: 73  QAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNR--YQSIRYEGFDPEGQPVE 130

Query: 125 -YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             A G  A  +QHE DHL G L+   ++   +
Sbjct: 131 RVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|253731832|ref|ZP_04865997.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724431|gb|EES93160.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|329728826|gb|EGG65247.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193]
          Length = 162

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ ++K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVKKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              + A   +A  + H +D +NGI F +   R+  D
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152


>gi|288553244|ref|YP_003425179.1| peptide deformylase [Bacillus pseudofirmus OF4]
 gi|288544404|gb|ADC48287.1| peptide deformylase [Bacillus pseudofirmus OF4]
          Length = 179

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 16/159 (10%)

Query: 12  PILRRVSR----PIEKINSD--------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRL 58
           P+LR V++    P  K + +        ++N  D  L   Y    G+G+AA QIG+  R+
Sbjct: 13  PVLREVAKEVPLPASKEDKETLQRMLDFVINSQDPELSEKYQLRPGVGIAAPQIGIAKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRYM 115
             + + D       M   NPKII+ S + +  +  EGCLS+  D    V R A ITV+  
Sbjct: 73  FAVHVADDNDNLYSMGLFNPKIISHSVEETHLESGEGCLSVDRDIPGIVPRYARITVKGT 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           + + +   +   GL++   QHE+DHLNGI+F D +   K
Sbjct: 133 NLDGEEVTLRLRGLVSIVFQHEMDHLNGIMFYDRIEGFK 171


>gi|54024621|ref|YP_118863.1| peptide deformylase [Nocardia farcinica IFM 10152]
 gi|54016129|dbj|BAD57499.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
          Length = 190

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I  DP L   ++P+   + ++  L+D++ + + + +G GLAA QIG    + V
Sbjct: 1   MAIRPILIAGDPRLTTPAQPVTVFDDELAALVDDLFDTLAAAEGAGLAANQIGDPRAVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            DL DH HR    V +NP   T +      D     EGCLS+P       R+    V  +
Sbjct: 61  YDLVDHGHRYR-GVVVNPVAETSALPETMPDPEGDLEGCLSVPGEWYPTGRADRARVTGL 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMI 158
           D       +   G LA CLQHE DHL G L+++ L    +R  R MI
Sbjct: 120 DATGAPITVEGTGYLARCLQHETDHLAGRLYLERLLGRHARAARRMI 166


>gi|16078520|ref|NP_389339.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309325|ref|ZP_03591172.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313652|ref|ZP_03595457.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318574|ref|ZP_03599868.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322848|ref|ZP_03604142.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6225248|sp|Q45495|DEF2_BACSU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|2633827|emb|CAB13329.1| formylmethionine deformylase A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|3282140|gb|AAC24930.1| unknown [Bacillus subtilis]
 gi|291483999|dbj|BAI85074.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
          Length = 184

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 24/161 (14%)

Query: 12  PILRRVSRPIE--KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           P LR  + P+E    +++   L D M+E + ++             G+GLAA QI +  R
Sbjct: 13  PALRETAEPVELPPTDAEKQQLAD-MIEFVKNSQNPELAEKYKLRPGVGLAAPQINIKKR 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----IPDYRADVKRSAFIT 111
           ++ +  +D + +       NPKI++ S + S     EGCLS    IP Y   V R A I 
Sbjct: 72  MIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGY---VPRYARIR 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+      ++  I   G  A   QHE+DHLNG++F DH+ +
Sbjct: 129 VKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDK 169


>gi|311029756|ref|ZP_07707846.1| peptide deformylase [Bacillus sp. m3-13]
          Length = 184

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 3/112 (2%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DY 100
           G+GLAA QI V  +++ + ++D +   +     NP+I++ S    F    EGCLS+  D 
Sbjct: 58  GVGLAAPQINVPKKMIAVHIRDESGTLHSYALFNPRIVSHSVEKSFLTSGEGCLSVDRDV 117

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV+      +   +   GL+A   QHE+DHLNG++F DH+++
Sbjct: 118 PGLVPRYARVTVKATTLQGEEIKLRLKGLVAIVFQHEIDHLNGVMFYDHINQ 169


>gi|289625972|ref|ZP_06458926.1| peptide deformylase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647973|ref|ZP_06479316.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488188|ref|ZP_07006225.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157467|gb|EFH98550.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330869369|gb|EGH04078.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 179

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 8/153 (5%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
           D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +LV+   +   
Sbjct: 10  DERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSE 69

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      + +NP I   +       EGCLS+P  R  V R   I     D + Q  
Sbjct: 70  RYPQAEAVPQTILLNPLITPLNPSLEEGWEGCLSVPGLRGMVNRYQSIRYEGFDPDGQRI 129

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              A G  A  +QHE DHL G L+   ++   +
Sbjct: 130 ERVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|301103913|ref|XP_002901042.1| peptide deformylase, putative [Phytophthora infestans T30-4]
 gi|262101380|gb|EEY59432.1| peptide deformylase, putative [Phytophthora infestans T30-4]
          Length = 210

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 6/152 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR--LVVID 62
           LV   +  LRRVS+ +  + +  +  L++++ + +    G+G+AA Q+    R  L++ D
Sbjct: 3   LVFLGNSALRRVSKSVADVRAPAVRRLLEDLDKEVRLEAGVGIAAPQLAHNLRMFLMIKD 62

Query: 63  LQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           + ++    + + +   +NPKI+  S       EGCLS+P Y+  ++R+  I V+Y D   
Sbjct: 63  MPENEDDLSKLEYQEVLNPKIVAMSKSSKRDFEGCLSVPGYQGIIERAEEIRVQYQDAEG 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +          A   QHELDHLNG++++D L 
Sbjct: 123 RKIQETLTDFPARIFQHELDHLNGVMYLDRLE 154


>gi|301633662|gb|ADK87216.1| peptide deformylase [Mycoplasma pneumoniae FH]
          Length = 193

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 14/164 (8%)

Query: 15  RRVSRPIEKINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVLYRLVVIDLQDH 66
           + V  P+++ + D +  +   ++  Y+ D        GIG+AA QIG   ++  I L D 
Sbjct: 23  KPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHLMDG 82

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAFITVRYMDCNAQHQI 123
              ++  + INPKII  S + S  +  EGCLS+P  ++  V R  +IT+   D   Q +I
Sbjct: 83  G-VEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQKEI 141

Query: 124 -IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            I A GL   CLQHE DHL G  +   ++ L   + T K  K++
Sbjct: 142 TITATGLFGMCLQHEFDHLQGRFYYHRINPL-NPLFTNKEWKVI 184


>gi|296331515|ref|ZP_06873986.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674182|ref|YP_003865854.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151328|gb|EFG92206.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412426|gb|ADM37545.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 184

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 22/160 (13%)

Query: 12  PILRRVSRPIEKINSDI-MNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58
           P LR  + P+E   +D     + +M+E + ++             G+GLAA QI +  R+
Sbjct: 13  PALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLAAPQINIKKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----IPDYRADVKRSAFITV 112
           + +  +D + +       NPKI++ S + S     EGCLS    IP Y   V R A I V
Sbjct: 73  IAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGY---VPRYARIRV 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +      ++  I   G  A   QHE+DHLNG++F DH+ +
Sbjct: 130 KGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDK 169


>gi|325277883|ref|ZP_08143429.1| peptide deformylase [Pseudomonas sp. TJI-51]
 gi|324096986|gb|EGB95286.1| peptide deformylase [Pseudomonas sp. TJI-51]
          Length = 178

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 8/144 (5%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           D  L RV+ P+      + ++  LID+M E M    G+GLAA Q+G+  +LV+   +   
Sbjct: 10  DERLLRVAAPVPAQLLGSGELQQLIDDMFETMRHVGGVGLAAPQVGIELQLVIFGFERSE 69

Query: 67  ----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      + +NP I   S +     EGCLS+P  R  V R   I    +D      
Sbjct: 70  RYPDAEAVPQTILLNPVITPTSTELEDGWEGCLSVPGLRGVVPRFKHICYEGIDPQGNAI 129

Query: 123 IIYADGLLATCLQHELDHLNGILF 146
             +A+G  A  +QHE DHL G L+
Sbjct: 130 RRFAEGFHARVVQHECDHLIGRLY 153


>gi|295397404|ref|ZP_06807493.1| peptide deformylase [Aerococcus viridans ATCC 11563]
 gi|294974368|gb|EFG50106.1| peptide deformylase [Aerococcus viridans ATCC 11563]
          Length = 205

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 29/166 (17%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---L 55
           P LR+ +  I   ++ +I  L D+M+E + ++             G+G+AA Q+ V   +
Sbjct: 28  PTLRKKAEKITFPVSEEIRQLADDMMEFLRNSQDEELAEKYGLRGGVGIAAPQLDVSIQM 87

Query: 56  YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKR 106
             L+V DL D      P+   VF+NP++++ S +    +EG  CLS+    P Y   V R
Sbjct: 88  TALLVPDLMD-PENAEPLLNGVFLNPRVVSHSVEGVCLREGEGCLSVDRDVPGY---VPR 143

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            A ITV Y D +         G  A  LQHE+DHLNGI+F DH+S 
Sbjct: 144 HARITVTYNDIDGNEYKKRFSGYPAIVLQHEIDHLNGIMFYDHISE 189


>gi|227524090|ref|ZP_03954139.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
 gi|227088721|gb|EEI24033.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
          Length = 188

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 24/170 (14%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV--L 55
           DP+LR+ ++ ++  +++D   L  N++E +  +             G+GLAA Q+GV  +
Sbjct: 12  DPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQVGVSKM 71

Query: 56  YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAF 109
              V++   D   +  P+   V INP I++ S       EG  CLS+  D    V RSA 
Sbjct: 72  MASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGYVPRSAR 131

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156
           IT++Y D +     I      A   QHE+DHL+GILF DH+++    KRD
Sbjct: 132 ITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181


>gi|227512180|ref|ZP_03942229.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
 gi|227084574|gb|EEI19886.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
          Length = 185

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 24/170 (14%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV--L 55
           DP+LR+ ++ ++  +++D   L  N++E +  +             G+GLAA Q+GV  +
Sbjct: 9   DPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQVGVSKM 68

Query: 56  YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAF 109
              V++   D   +  P+   V INP I++ S       EG  CLS+  D    V RSA 
Sbjct: 69  MASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGYVPRSAR 128

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156
           IT++Y D +     I      A   QHE+DHL+GILF DH+++    KRD
Sbjct: 129 ITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 178


>gi|195107438|ref|XP_001998319.1| GI23899 [Drosophila mojavensis]
 gi|193914913|gb|EDW13780.1| GI23899 [Drosophila mojavensis]
          Length = 203

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR  S  +  E+++S +I+ ++D M++V+   D +G+AA Q+GV  R++ ++ ++  
Sbjct: 21  DPVLRIRSDEVSPERLDSKEILGIVDQMVKVLRHYDCVGVAAPQLGVPLRIIAMEFREEK 80

Query: 68  HRK-NP-------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             +  P              VFINPKI    D      EGC+S+  + A V R   + V 
Sbjct: 81  REQFTPEVYLQRKMSTLPLSVFINPKIEIIGDMQHTQPEGCMSVRGFSARVARYDRVRVT 140

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +        +   G  A   QHE+DHLNGI++ID +
Sbjct: 141 GIGMLGTPDELELVGWSARIAQHEMDHLNGIIYIDRM 177


>gi|302779750|ref|XP_002971650.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii]
 gi|300160782|gb|EFJ27399.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii]
          Length = 166

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 15/150 (10%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++ DP LR  +  I   +  +  L   ML+V Y  DG+GL+A Q+GV  RL+V + + 
Sbjct: 8   IVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARLMVFNPEG 64

Query: 66  HAHRKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              +    VF+NP I+ F  +    FS      +S   YR+++K          D N + 
Sbjct: 65  ERGKGKEYVFVNPMIVKFGKEREARFSFIACVFVSRDRYRSELK--------AQDINGKK 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
                 G  A   +HE DHL G+L+ID ++
Sbjct: 117 FGTAFRGWTAGIFRHEYDHLEGVLYIDQMT 146


>gi|170761484|ref|YP_001786248.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408473|gb|ACA56884.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 166

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 15/168 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M  KP+++  D IL R S  I+K N D    ++N + + +    +  G G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             R++ + L D  H      FINP I+ F   D F ++ + C+S P     V+R     V
Sbjct: 61  SVRIIYMHLGDKTH-----YFINP-ILEFIGEDTFHLWDD-CMSFPGLEVYVERHKKCKV 113

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            Y + N +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 114 TYKNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|238026898|ref|YP_002911129.1| peptide deformylase [Burkholderia glumae BGR1]
 gi|237876092|gb|ACR28425.1| Peptide deformylase [Burkholderia glumae BGR1]
          Length = 177

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L  V++P+E  ++  ++ L+ +M E M+  +G GLAA QIGV  +L++    ++A  
Sbjct: 10  DPRLLDVAKPVEAFDTPALHELVADMFETMHHANGAGLAAPQIGVGLQLIIFGFGNNARY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INP I     D     EGCLS+P  R  V R   +     D   +    
Sbjct: 70  PDAPAVPETVLINPSIEYLPPDMEEGWEGCLSVPGMRGVVSRYRKVHYTGFDQYGKRIDR 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+   A  +QHE DHL G L+
Sbjct: 130 IAEDFHARVVQHEYDHLIGKLY 151


>gi|300909945|ref|ZP_07127405.1| peptide deformylase [Lactobacillus reuteri SD2112]
 gi|300892593|gb|EFK85953.1| peptide deformylase [Lactobacillus reuteri SD2112]
          Length = 186

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 19/161 (11%)

Query: 11  DPILRR----VSRPI----EKINSDIMNLID-----NMLEVMYSTDGIGLAAVQIGVLYR 57
           +P+LR+    VS P+    +K+  D+M  ++      + E      G+GLAA Q+GV  +
Sbjct: 12  NPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAAPQVGVSKQ 71

Query: 58  LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111
           +  + +   A  + P+   V INP I++ S  +    EG  CLS+  D    V R   IT
Sbjct: 72  MAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 131

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 132 LRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172


>gi|13507984|ref|NP_109933.1| peptide deformylase [Mycoplasma pneumoniae M129]
 gi|2499923|sp|P75527|DEF_MYCPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1674288|gb|AAB96235.1| polypeptide deformylase [Mycoplasma pneumoniae M129]
          Length = 216

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 14/164 (8%)

Query: 15  RRVSRPIEKINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVLYRLVVIDLQDH 66
           + V  P+++ + D +  +   ++  Y+ D        GIG+AA QIG   ++  I L D 
Sbjct: 46  KPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHLMDG 105

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAFITVRYMDCNAQHQI 123
              ++  + INPKII  S + S  +  EGCLS+P  ++  V R  +IT+   D   Q +I
Sbjct: 106 G-VEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQKEI 164

Query: 124 -IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            I A GL   CLQHE DHL G  +   ++ L   + T K  K++
Sbjct: 165 TITATGLFGMCLQHEFDHLQGRFYYHRINPL-NPLFTNKEWKVI 207


>gi|121604720|ref|YP_982049.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
 gi|120593689|gb|ABM37128.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
          Length = 179

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 13/146 (8%)

Query: 11  DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D  L RV++P+   ++D ++ L+ +M   M S DG GLAA QIGV  ++V+    D  + 
Sbjct: 11  DARLLRVAKPVTAFDTDELHVLVSDMFYTMQSVDGAGLAAPQIGVDLQVVIFG-SDQLNP 69

Query: 70  KNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + P        V +NP I   S D     EGCLS+P  R  V R  F  +RY   +    
Sbjct: 70  RYPAAPVVPRTVLVNPVITPLSADEESDWEGCLSVPGLRGMVPR--FSHIRYTGFDQYGD 127

Query: 123 II--YADGLLATCLQHELDHLNGILF 146
            I    DG  A  +QHE DHL G L+
Sbjct: 128 PIDRTVDGFHARVVQHECDHLIGKLY 153


>gi|124485039|ref|YP_001029655.1| peptide deformylase [Methanocorpusculum labreanum Z]
 gi|124362580|gb|ABN06388.1| peptide deformylase [Methanocorpusculum labreanum Z]
          Length = 157

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + DP+L   +  ++ I    + ++ NM + M     IGL+A QIGV  RL +++      
Sbjct: 8   YGDPVLFLHAETVQNIGPLELEILTNMWDTMIHNKCIGLSAPQIGVSKRLFIVNAGGVTI 67

Query: 69  R-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           +  NP V     ++          EG   IP  +  V+R   IT RY+D + +       
Sbjct: 68  KGANPEVLKEGALVE-------EMEGSPCIPGIQRPVRRPGKITCRYLDISGETIETELK 120

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           G+ A    HE DH  GIL++DHL  +++ MI K + K
Sbjct: 121 GIAARAFLHEKDHHEGILYLDHLKPIQKRMILKSLEK 157


>gi|227544835|ref|ZP_03974884.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
 gi|227185182|gb|EEI65253.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
          Length = 183

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 19/161 (11%)

Query: 11  DPILRR----VSRPI----EKINSDIMNLID-----NMLEVMYSTDGIGLAAVQIGVLYR 57
           +P+LR+    VS P+    +K+  D+M  ++      + E      G+GLAA Q+GV  +
Sbjct: 9   NPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAAPQVGVSKQ 68

Query: 58  LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111
           +  + +   A  + P+   V INP I++ S  +    EG  CLS+  D    V R   IT
Sbjct: 69  MAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 129 LRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 169


>gi|315931997|gb|EFV10950.1| polypeptide deformylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 102

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 50/80 (62%)

Query: 76  INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           INP+II   ++     EGCLS+PD+  +VKR   I ++Y D   + + + A G LA  +Q
Sbjct: 5   INPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQ 64

Query: 136 HELDHLNGILFIDHLSRLKR 155
           HE DHLNG LFI+ +S  KR
Sbjct: 65  HENDHLNGHLFIEKISFAKR 84


>gi|239826455|ref|YP_002949079.1| peptide deformylase [Geobacillus sp. WCH70]
 gi|239806748|gb|ACS23813.1| peptide deformylase [Geobacillus sp. WCH70]
          Length = 184

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 22/158 (13%)

Query: 12  PILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQIGVLYRL 58
           P LR+V+ P+    S+     + +L+D         + E      GIGLAA QI V  R+
Sbjct: 13  PTLRKVAEPVSLPPSEEDKQVLQSLLDYVKMSQNPELAEKYGLRPGIGLAAPQINVSKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITV 112
           + + + D           NPKI++ S    +    EGCLS+    P Y   V R A ITV
Sbjct: 73  IAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGY---VPRYARITV 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                  +   +   GL A   QHE+DHLNGI+F DH+
Sbjct: 130 TGTTLEGKEVTLRLKGLPAIVFQHEIDHLNGIMFYDHI 167


>gi|312111833|ref|YP_003990149.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
 gi|311216934|gb|ADP75538.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
          Length = 185

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 75/158 (47%), Gaps = 22/158 (13%)

Query: 12  PILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQIGVLYRL 58
           P LR+V+ P+    S+     + +L+D         + E      GIGLAA QI V  R+
Sbjct: 14  PTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGIGLAAPQINVSKRM 73

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITV 112
           + + + D           NPKI++ S    +    EGCLS+    P Y   V R A ITV
Sbjct: 74  IAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGY---VPRYARITV 130

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                + +   +   GL A   QHE+DHLNGI+F DH+
Sbjct: 131 TGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHI 168


>gi|118780782|ref|XP_310421.3| AGAP003861-PA [Anopheles gambiae str. PEST]
 gi|116131029|gb|EAA06035.3| AGAP003861-PA [Anopheles gambiae str. PEST]
          Length = 241

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+LR  +  I   E  ++++  L  ++ +VM +   +GLAA Q+G+  R  V++
Sbjct: 53  IVQLGDPVLRVPANAIPEKELQSAEVQYLARHLTKVMRAYRCVGLAAPQLGLSLRAFVME 112

Query: 63  LQDHAHRK-----------NPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            +D    +            P+   + +NP++   + +  ++ E C S+  YRADV R  
Sbjct: 113 FKDELRDQYTKADYKLREMEPLPLTILLNPELKVLNYEKVIHTEACESVRGYRADVPRYR 172

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I ++  D     Q +   G  A   QHE+DHLNGI++ D ++R
Sbjct: 173 EILLQGFDATGNRQELRLSGWNARIAQHEMDHLNGIVYTDIMNR 216


>gi|148378868|ref|YP_001253409.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           3502]
 gi|153931530|ref|YP_001383251.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           19397]
 gi|153936227|ref|YP_001386800.1| putative peptide deformylase [Clostridium botulinum A str. Hall]
 gi|148288352|emb|CAL82429.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|152927574|gb|ABS33074.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           19397]
 gi|152932141|gb|ABS37640.1| putative peptide deformylase [Clostridium botulinum A str. Hall]
          Length = 166

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M  KP+++  D IL R+S  I+K N D    ++N + + +    +  G G  +AA QIG 
Sbjct: 1   MSTKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             R++ + L D  H      FINP I+ F   D F ++ + C+S P     V+R     V
Sbjct: 61  SVRIIYMHLGDKTH-----YFINP-ILEFIGEDTFHLWDD-CMSFPGLEVYVERHKKCKV 113

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Y + + +   +Y +G L+   QHE DHL+GIL +     LK   I K  S
Sbjct: 114 TYKNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164


>gi|194468417|ref|ZP_03074403.1| peptide deformylase [Lactobacillus reuteri 100-23]
 gi|194453270|gb|EDX42168.1| peptide deformylase [Lactobacillus reuteri 100-23]
          Length = 186

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 19/161 (11%)

Query: 11  DPILRR----VSRPI----EKINSDIMNLID-----NMLEVMYSTDGIGLAAVQIGVLYR 57
           +P+LR+    VS P+    +K+  D+M  ++      + E      G+GLAA Q+GV  +
Sbjct: 12  NPVLRKRAAKVSFPLSDEDQKLAKDMMEYLEVSQDPELCEKYKLRAGVGLAAPQVGVSKQ 71

Query: 58  LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111
           +  + +   A  + P+   V INP I++ S  +    EG  CLS+  D    V R   IT
Sbjct: 72  MAAVLVPAPAEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 131

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 132 LRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172


>gi|320327457|gb|EFW83470.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330877286|gb|EGH11435.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 179

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
           D  L R++ P+      +S++  LI +M E ++S  G+GLAA QIG+  +LV+   +   
Sbjct: 10  DERLLRIAPPVPADMFGSSELNTLIADMFETIHSVGGVGLAAPQIGIDLQLVIFGFERSE 69

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      + +NP I   S       EGCLS+P  R  V R  + ++RY   + + Q
Sbjct: 70  RYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNR--YQSIRYEGFDPEGQ 127

Query: 123 II--YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +   A G  A  +QHE DHL G L+   ++   +
Sbjct: 128 PVERVAHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|195157968|ref|XP_002019866.1| GL12633 [Drosophila persimilis]
 gi|194116457|gb|EDW38500.1| GL12633 [Drosophila persimilis]
          Length = 238

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 17/159 (10%)

Query: 11  DPILRR--VSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR+   + P+E I   +I  +++ M++V+   + +G+AA QIGV  R++ ++ +   
Sbjct: 56  DPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFKKSL 115

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++ P               V INP +   +     + EGC+S+  + A+V+R   + + 
Sbjct: 116 QKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGVKLS 175

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +D +++   +   G  A   QHE+DHL+G L+ D + R
Sbjct: 176 GLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214


>gi|125778498|ref|XP_001360007.1| GA16144 [Drosophila pseudoobscura pseudoobscura]
 gi|54639757|gb|EAL29159.1| GA16144 [Drosophila pseudoobscura pseudoobscura]
          Length = 238

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 17/159 (10%)

Query: 11  DPILRR--VSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR+   + P+E I   +I  +++ M++V+   + +G+AA QIGV  R++ ++ +   
Sbjct: 56  DPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFKKSL 115

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++ P               V INP +   +     + EGC+S+  + A+V+R   + + 
Sbjct: 116 QKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGVKLS 175

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +D +++   +   G  A   QHE+DHL+G L+ D + R
Sbjct: 176 GLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214


>gi|229817289|ref|ZP_04447571.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM
           20098]
 gi|229785078|gb|EEP21192.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM
           20098]
          Length = 217

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V  
Sbjct: 30  PIVQAGEPVLRQQTVAYTGQLSKHTLAKLIDAMRTTMLEAPGVGLAATQIGLGLALAV-- 87

Query: 63  LQDHAH--RKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           L+DH      +P         V INP       +   + EGCLS   Y+A  KR   I  
Sbjct: 88  LEDHIRDDEDDPREIGELPFHVIINPVYAPVGTETRSFYEGCLSFDGYQAVRKRWLDIDA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            + D N  H      G  A   QHE DHL+G L+ID
Sbjct: 148 EWDDENGMHHKERMHGWPARIFQHETDHLSGELYID 183


>gi|227505915|ref|ZP_03935964.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
 gi|227197437|gb|EEI77485.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
          Length = 206

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 82/178 (46%), Gaps = 26/178 (14%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P+VI  DP+L   + P+ E I+S ++  LI +M E M    G+GLAA Q+G+  RL
Sbjct: 1   MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMYETMDVAHGVGLAANQVGINKRL 60

Query: 59  VVIDLQD-------------HAHRKNPMVFINPKIITF-------SDDFSVYQEGCLSIP 98
            V    D                RK     INP + T        +DD S   EGCLS+P
Sbjct: 61  FVYHCPDTDGPEGTELPADKAGMRKG--CVINPVLETSEIPEGMPADDGS-EDEGCLSVP 117

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKR 155
                  R+ +  V   D +     I   G  A  LQHE  HL+G ++ D L+ R KR
Sbjct: 118 GEGFPTGRADWARVTGKDEHGNDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRFKR 175


>gi|119026311|ref|YP_910156.1| peptide deformylase [Bifidobacterium adolescentis ATCC 15703]
 gi|154488206|ref|ZP_02029323.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis
           L2-32]
 gi|158512525|sp|A1A2Z1|DEF_BIFAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|118765895|dbj|BAF40074.1| peptide deformylase 1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154083357|gb|EDN82402.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis
           L2-32]
          Length = 218

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 11/156 (7%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  ++   +     +  LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQQTIAYDGQLSRKTLDKLIDTMRTTMLEAPGVGLAATQIGLGLALAVVE 89

Query: 63  ----LQDHAHRKNPMVF-----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                 D    +    F     INP       +   + EGCLS   Y+A  KR   IT R
Sbjct: 90  DHVCEGDDGDPREAAEFPFHAIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDITAR 149

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           + D +      +  G  A   QHE DHL+G L+ID 
Sbjct: 150 WQDEDGNKHEEHLHGWPARIFQHETDHLSGELYIDQ 185


>gi|167570376|ref|ZP_02363250.1| peptide deformylase [Burkholderia oklahomensis C6786]
          Length = 177

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 14  LRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKN 71
           L  V+RP+E  N+ ++  L+ +M E M+  +G GLAA Q+GV  ++++        + + 
Sbjct: 13  LLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVIIFGFGSSERYPEA 72

Query: 72  P----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           P     V +NP +     D     EGCLS+P  R  V R   +     D   +     A+
Sbjct: 73  PPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQFGEKLERVAE 132

Query: 128 GLLATCLQHELDHLNGILF 146
           G  A  +QHE DHL G L+
Sbjct: 133 GFHARVVQHEYDHLIGKLY 151


>gi|297204169|ref|ZP_06921566.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
 gi|197714146|gb|EDY58180.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
          Length = 218

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 18/159 (11%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           P+V   DP+LR+    IE  +  +        ++ +   M++  G+GLAA Q+GV  R+ 
Sbjct: 25  PIVAAGDPVLRQG---IEHYDGHLDGALLSRFVEALRVTMHAAPGVGLAAPQVGVPLRIA 81

Query: 60  VIDLQDH-------AHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           VI+           A  + P  F   +NP         + + EGCLS+P ++A V R A 
Sbjct: 82  VIEDPAPVPEEIRLARGRVPQPFRVLVNPSYAPVGTPRAAFFEGCLSVPGWQAVVARPAE 141

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           + +   D N +       G  A  +QHE DHL+G+L++D
Sbjct: 142 VRLTCEDENGRAVDEVFSGWPARIVQHETDHLDGVLYLD 180


>gi|73957448|ref|XP_853641.1| PREDICTED: similar to peptide deformylase-like protein [Canis
           familiaris]
          Length = 242

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP LR V+ P+E        +  L+  +++VM     +GL+A Q+GV  +++  +  +  
Sbjct: 71  DPALRTVAAPVEPAQLAGPQLQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLAFEFPEAL 130

Query: 68  HRK-----------NPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            R             P    V +NP +         + EGC S+  + A V R   + + 
Sbjct: 131 FRACAPRLRETRQMEPFPLRVVVNPSLRVLDSRRVTFPEGCESVAGFLACVPRFQAVQIS 190

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +D   +  +  A G  A  +QHE+DHL G LFID +
Sbjct: 191 GLDPKGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 227


>gi|295399645|ref|ZP_06809626.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978048|gb|EFG53645.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 184

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 75/158 (47%), Gaps = 22/158 (13%)

Query: 12  PILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQIGVLYRL 58
           P LR+V+ P+    S+     + +L+D         + E      GIGLAA QI V  R+
Sbjct: 13  PTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGIGLAAPQINVSKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITV 112
           + + + D           NPKI++ S    +    EGCLS+    P Y   V R A ITV
Sbjct: 73  IAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGY---VPRYARITV 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                + +   +   GL A   QHE+DHLNGI+F DH+
Sbjct: 130 TGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHI 167


>gi|312868986|ref|ZP_07729164.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
 gi|311095489|gb|EFQ53755.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
          Length = 186

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 19/163 (11%)

Query: 11  DPILRR----VSRPIEKINSDIMNLIDNMLEVMYSTD---------GIGLAAVQIGVLYR 57
           DP+LR+    VS P+   + ++   +   LEV    +         G+GLAA Q+GV  +
Sbjct: 12  DPVLRKRAAKVSFPLSDEDQELAKKMMEYLEVSQDPELCEKYKLRAGVGLAAPQVGVSKQ 71

Query: 58  LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111
           +  + +        P    V INP I++ S  +    EG  CLS+  D    V R   IT
Sbjct: 72  MAAVLVPATEEGGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 131

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           +RY D N +   +      A   QHE+DHL+G+LF DH+++ K
Sbjct: 132 LRYQDTNGEKHQVRLKNYPAIVCQHEIDHLHGMLFYDHINKQK 174


>gi|238061746|ref|ZP_04606455.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237883557|gb|EEP72385.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 509

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 11/148 (7%)

Query: 13  ILRRVSR----PIEK-INSDIMNLIDNML----EVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +LR+ SR    P E  +  ++++ + + L    E+   + G+G+AA Q+G+ +   V+  
Sbjct: 344 LLRQPSRQFDLPAEAGVAREVVDRLGSALVRLDELHPFSKGVGIAATQLGLAWAAAVVRP 403

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D A    P+V +NP+++  S D     EGCLS  D+R  V RS  I V +   +    I
Sbjct: 404 PDRA--AEPVVLLNPRVVDSSPDTDEQYEGCLSFFDHRGLVPRSLRIDVEHAQWDGGRLI 461

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +A  + HE+DHL G L++D ++
Sbjct: 462 TSFEFAMARLVAHEIDHLEGRLYVDRMT 489


>gi|138894591|ref|YP_001125044.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2]
 gi|196247801|ref|ZP_03146503.1| peptide deformylase [Geobacillus sp. G11MC16]
 gi|134266104|gb|ABO66299.1| N-formyl-methionyl-aminoacyl-tRNA deformylase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212585|gb|EDY07342.1| peptide deformylase [Geobacillus sp. G11MC16]
          Length = 184

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 22/159 (13%)

Query: 12  PILRRVSRPIEKINSD-----IMNLIDNM-------LEVMYS-TDGIGLAAVQIGVLYRL 58
           P LR+V+ P+    S+     + +L+D +       +   Y    GIGLAA QI V  R+
Sbjct: 13  PTLRKVAEPVPLPASEEDKRILQSLLDYLKMSQDPEMAAKYGLRPGIGLAAPQINVSKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITV 112
           + + + D           NPKI++ S    +    EGCLS+    P Y   V R A ITV
Sbjct: 73  IAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGY---VPRYARITV 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                + +   +   GL A   QHE+DHLNGI+F DH++
Sbjct: 130 TGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIN 168


>gi|321315214|ref|YP_004207501.1| peptide deformylase [Bacillus subtilis BSn5]
 gi|320021488|gb|ADV96474.1| peptide deformylase [Bacillus subtilis BSn5]
          Length = 184

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 24/161 (14%)

Query: 12  PILRRVSRPIE--KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           P LR  + P+E    +++   L D M+E + ++             G+GLAA QI +  R
Sbjct: 13  PALRETAEPVELPPTDAEKQQLAD-MIEFVKNSQNPELAEKYKLRPGVGLAAPQINIKKR 71

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----IPDYRADVKRSAFIT 111
           ++ +  +D + +       NPKI++ S + S     EGCLS    IP Y   V R + I 
Sbjct: 72  MIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGY---VPRYSRIR 128

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+      ++  I   G  A   QHE+DHLNG++F DH+ +
Sbjct: 129 VKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDK 169


>gi|253733547|ref|ZP_04867712.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258423742|ref|ZP_05686628.1| polypeptide deformylase [Staphylococcus aureus A9635]
 gi|253728601|gb|EES97330.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257845974|gb|EEV70002.1| polypeptide deformylase [Staphylococcus aureus A9635]
          Length = 162

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVVKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              + A   +A  + H +D +NGI F +   R+  D
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152


>gi|323454882|gb|EGB10751.1| hypothetical protein AURANDRAFT_22058 [Aureococcus anophagefferens]
          Length = 175

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 9/146 (6%)

Query: 12  PILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           P LR  ++P+ +       +  ++ ++++ M   +G G+A  QIG  +R+ V++      
Sbjct: 30  PCLREQAKPVPEAMFGTPALDAIVADLVDTMRDANGAGIAGPQIGEGWRIFVVEGSGANP 89

Query: 69  R-----KNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           R     K P+ VF+NP++    +      EGCLSIP  R  V R++ +       +    
Sbjct: 90  RYPYKPKLPLTVFVNPELEVVDEAPMEIFEGCLSIPGVRGRVARASKVRCAARRPDGSSF 149

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
            + A G  A  LQHE DHL+GILF D
Sbjct: 150 SVLAAGHAAGTLQHEQDHLDGILFPD 175


>gi|289551005|ref|YP_003471909.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
 gi|289180537|gb|ADC87782.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
          Length = 162

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+    P+L+R ++ + + +  +  L+ ++ + +Y  +   L A QIG+  ++ +
Sbjct: 1   MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++     +  +  INP II  SD+  +  EG +S+P    +V RS  I V+  D    
Sbjct: 61  VDME----MEGLLQLINPTIIKVSDEQVIDLEGSISLPGIYGEVARSQMIVVQSYDVQGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              + A   +A  +QH +D +NGI F +   ++  D
Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKILTD 152


>gi|134094555|ref|YP_001099630.1| peptide deformylase 2 like proterin [Herminiimonas arsenicoxydans]
 gi|133738458|emb|CAL61503.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas
           arsenicoxydans]
          Length = 178

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L RV+ P+++ N+  +N LI +M + M++  G GLAA QIGV  RLV+   + +   
Sbjct: 11  DPRLLRVAEPVKEFNTPELNALIADMFDTMHAAHGAGLAAPQIGVNLRLVIYGFKQNTRY 70

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INPK+   S +     EGCLS+P  R  V R + +     D   +    
Sbjct: 71  PDAPPVPETVLINPKLRPLSSEREEGWEGCLSVPGLRGVVPRFSSLHYEGFDQFGKAISR 130

Query: 125 YADGLLATCLQHELDHLNGILF 146
            ADG  A  +QHE DHL+GIL+
Sbjct: 131 DADGFHARVVQHECDHLDGILY 152


>gi|255082960|ref|XP_002504466.1| predicted protein [Micromonas sp. RCC299]
 gi|226519734|gb|ACO65724.1| predicted protein [Micromonas sp. RCC299]
          Length = 285

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 31/156 (19%)

Query: 12  PILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-- 66
           P+LR+++   P+++I+S  I  LI  M+ +M +  G+GLAA QIGV YR+ V++  +   
Sbjct: 73  PVLRQMAEEIPLDRIDSATIQELIQEMISIMRNR-GVGLAAPQIGVPYRIFVMEDTEEGM 131

Query: 67  ---------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                    A  + P    V INP +   S+    + EGCLS+              VR 
Sbjct: 132 SDVSKDDLVAQERAPFPAKVIINPTVTPVSNQSCAFFEGCLSV-------------RVRG 178

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + +     A G  A   QHE+DHL+G+L++D +
Sbjct: 179 YGGDGKPVDFVAKGWQARIAQHEMDHLDGVLYVDRM 214


>gi|225351798|ref|ZP_03742821.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158142|gb|EEG71425.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 218

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 15/157 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+ +   E   S   +  LI+ M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
             DH    +             V INP       +   + EGCLS   Y+A  KR   I 
Sbjct: 90  --DHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDII 147

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            R+ D + +    +  G  A   QHE DHL+G L+ID
Sbjct: 148 ARWQDEDGKQHEEHLHGWPARIFQHETDHLSGELYID 184


>gi|327287510|ref|XP_003228472.1| PREDICTED: peptide deformylase, mitochondrial-like [Anolis
           carolinensis]
          Length = 236

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+LR ++ P+E       D+  LI  ++ +M     + L+A Q+G+  ++ V +     
Sbjct: 65  DPVLRSLAAPVEPSQVTGKDVQALIQRLVRLMRRERCVALSAPQVGIPLQVFVAEYPTRL 124

Query: 63  LQDH------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           L++H      A +  P    VFINP +         + EGC S+  + A V R   + V 
Sbjct: 125 LEEHPPDVRQARQMAPFPLRVFINPTMRVLDSQVVSHPEGCRSVHGFSACVPRFLAVQVA 184

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++   +     A G  A  +QHE+DHL GIL++D +
Sbjct: 185 GLNEAGEESSWEACGWAARIVQHEMDHLQGILYVDRM 221


>gi|311067971|ref|YP_003972894.1| peptide deformylase [Bacillus atrophaeus 1942]
 gi|310868488|gb|ADP31963.1| peptide deformylase [Bacillus atrophaeus 1942]
          Length = 184

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----I 97
           G+GLAA QI +  R++ I  +D +         NPKII+ S + S     EGCLS    I
Sbjct: 58  GVGLAAPQININKRMIAIHAEDASGTLYSYALFNPKIISHSVEKSYLTSGEGCLSVDEAI 117

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           P Y   V R A I V+      +   I   G LA   QHE+DHLNG++F DH+ +
Sbjct: 118 PGY---VPRYARIRVKATTLEGEEIDIRLKGFLAIVFQHEIDHLNGVMFYDHIDK 169


>gi|237654289|ref|YP_002890603.1| peptide deformylase [Thauera sp. MZ1T]
 gi|237625536|gb|ACR02226.1| peptide deformylase [Thauera sp. MZ1T]
          Length = 174

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 10/167 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + L+   D  L + + P+ +  +  +  LI+++ + M +  G+GLAA QIGV  ++V
Sbjct: 1   MAVRTLLRMGDARLLQPAAPVGEFGTPALAALIEDLFDTMAAHGGVGLAAPQIGVGLQVV 60

Query: 60  VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +   +      +       + +NP I+  +++     EGCLS+P  R  V R+    +RY
Sbjct: 61  IFGFERSERYPDAAPVPRTILLNPVIVPLTEEREEGWEGCLSVPGLRGMVPRA--TRIRY 118

Query: 115 MDCNAQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
                  + I  +A+G  A  +QHE DHL G+L+   +   +R   T
Sbjct: 119 TGYTPAGEPIERFAEGFHARVVQHECDHLAGVLYPMRVRDFRRFGFT 165


>gi|269796214|ref|YP_003315669.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM
           10542]
 gi|269098399|gb|ACZ22835.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM
           10542]
          Length = 211

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 11/155 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61
           P+V    P+LR+ +   +    D++  L+D+M   M    G+GLAA QIG+  ++ V+  
Sbjct: 24  PIVQAGHPVLRQPAAAYDGQLGDLLPALLDSMRLTMVDAPGVGLAAPQIGIGLQIAVLHD 83

Query: 62  ----DLQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
               D +D   R  P+   V +NP      D+   + EGCLS+  Y+A V R   + +  
Sbjct: 84  AGSTDPEDPRER-TPLEHRVLVNPSYEGVGDEVRSFYEGCLSVEGYQAVVARHRTVRLTG 142

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            D   +       G  A  +QHE DHL G L+IDH
Sbjct: 143 QDETGRALDEQLTGWPARIVQHETDHLRGQLYIDH 177


>gi|21282827|ref|NP_645915.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483378|ref|YP_040602.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486054|ref|YP_043275.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|257425268|ref|ZP_05601693.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427928|ref|ZP_05604326.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430561|ref|ZP_05606943.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433322|ref|ZP_05609680.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436164|ref|ZP_05612211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|282903768|ref|ZP_06311656.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|282905532|ref|ZP_06313387.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908508|ref|ZP_06316338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910787|ref|ZP_06318590.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913990|ref|ZP_06321777.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282918912|ref|ZP_06326647.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282924035|ref|ZP_06331711.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|283957956|ref|ZP_06375407.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501023|ref|ZP_06666874.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509982|ref|ZP_06668690.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|293526570|ref|ZP_06671255.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|295427700|ref|ZP_06820332.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297208141|ref|ZP_06924572.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297591341|ref|ZP_06949979.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300912221|ref|ZP_07129664.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|38604914|sp|Q8NX19|DEFL_STAAW RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81649434|sp|Q6G9Z8|DEFL_STAAS RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81651281|sp|Q6GHM0|DEFL_STAAR RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|21204266|dbj|BAB94963.1| MW1098 [Staphylococcus aureus subsp. aureus MW2]
 gi|49241507|emb|CAG40193.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49244497|emb|CAG42926.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|257271725|gb|EEV03863.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274769|gb|EEV06256.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278689|gb|EEV09308.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281415|gb|EEV11552.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284446|gb|EEV14566.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|282314007|gb|EFB44399.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|282316722|gb|EFB47096.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282322058|gb|EFB52382.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282325392|gb|EFB55701.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327570|gb|EFB57853.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330824|gb|EFB60338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595386|gb|EFC00350.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|283470427|emb|CAQ49638.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ST398]
 gi|283790105|gb|EFC28922.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920642|gb|EFD97705.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|291096028|gb|EFE26289.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466926|gb|EFF09444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|295128058|gb|EFG57692.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887384|gb|EFH26286.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297576227|gb|EFH94943.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|298694508|gb|ADI97730.1| probable peptide deformylase 1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886467|gb|EFK81669.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|312438408|gb|ADQ77479.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194101|gb|EFU24494.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 162

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              + A   +A  + H +D +NGI F +   R+  D
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152


>gi|282916464|ref|ZP_06324226.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|283770276|ref|ZP_06343168.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
 gi|282319904|gb|EFB50252.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|283460423|gb|EFC07513.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
          Length = 162

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVARSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              + A   +A  + H +D +NGI F +   R+  D
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152


>gi|330994009|ref|ZP_08317939.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1]
 gi|329758955|gb|EGG75469.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1]
          Length = 180

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 11/162 (6%)

Query: 12  PILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           P+L + +R +    +  +  L+ +M+E M    G GLAA Q+    RL V  +       
Sbjct: 16  PVLLQPARAVTDPQAPALRTLVADMIETMLDAQGAGLAAPQVHHGLRLFVYQVPPGRSAG 75

Query: 71  N------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P   INP +     +     EGCLSIP  R  V R  +  + Y   N Q Q +
Sbjct: 76  EDDPPCPPAALINPVLDPVDTEMVDRLEGCLSIPGMRGWVPR--YRRIAYRGINGQGQPV 133

Query: 125 Y--ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  A G LA  LQHE DHL+GIL+   +  L R     +M++
Sbjct: 134 HGVASGFLANVLQHEYDHLDGILYPMRMPDLGRMGFDSEMAR 175


>gi|291613763|ref|YP_003523920.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
 gi|291583875|gb|ADE11533.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
          Length = 177

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 9/129 (6%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKNPMVFINPK 79
             ++  L+ +M E M + DG+GLAA QIGV  R+V+ ++  +     A      V INP 
Sbjct: 26  TPELHALLKDMRETMLAMDGVGLAAPQIGVDLRVVIFEVNQNPRYPDAETVPQTVLINPV 85

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII--YADGLLATCLQHE 137
           +   SD      EGCLS+P  R  V R  +  +RY   +    +I     G  A  +QHE
Sbjct: 86  LTPLSDVMEEGWEGCLSVPGMRGLVPR--YTHLRYQGRDEYGALIDRTVSGFHARVVQHE 143

Query: 138 LDHLNGILF 146
            DHL+GIL+
Sbjct: 144 CDHLDGILY 152


>gi|302523131|ref|ZP_07275473.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|302432026|gb|EFL03842.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 214

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 18/171 (10%)

Query: 5   PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  + P E     + +  L+  M   M    G+GLAA QIGV  RL V  
Sbjct: 25  PIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAV-- 82

Query: 63  LQDHAHRKNPM------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           L+D A     +            V +NP      +  + + EGCLS+P ++A V R A +
Sbjct: 83  LEDPATVPEEVRRVREREPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVV 142

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            +R  D +         G  A  +QHE DHL+G L++D    L R + + +
Sbjct: 143 RLRAEDEHGTALDEEVRGWPARIVQHETDHLDGTLYVDRA--LPRSLTSNE 191


>gi|81428697|ref|YP_395697.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K]
 gi|123728642|sp|Q38WP3|DEF_LACSS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78610339|emb|CAI55388.1| Formylmethionine deformylase (N-formylmethionylaminoacyl-tRNA
           deformylase) [Lactobacillus sakei subsp. sakei 23K]
          Length = 185

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 26/164 (15%)

Query: 11  DPILRRVSRPIE--------KINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR +++P+         ++ +D+M  ++N  +   +       G+GLAA Q+ V  +
Sbjct: 12  NPTLREIAQPVSFPLSDEDRQLAADMMTFLENSQDPEIAAKYQLRAGVGLAAPQVDVSKQ 71

Query: 58  LVVIDLQDHAHRKNPM---VFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSA 108
           +  + L      + P+   V INPKII+ S  D      EGCLS+    P Y   V R  
Sbjct: 72  MSAV-LVPGPEGEAPILKDVIINPKIISHSVQDAALAEGEGCLSVDREVPGY---VPRHD 127

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            IT+RY D       I      A   QHE+DHLNGILF DH+++
Sbjct: 128 RITLRYQDVEGVSHKIRLKNYPAIVCQHEIDHLNGILFFDHINK 171


>gi|15924205|ref|NP_371739.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926798|ref|NP_374331.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315]
 gi|57651784|ref|YP_186090.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|87161304|ref|YP_493805.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194921|ref|YP_499721.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267706|ref|YP_001246649.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393764|ref|YP_001316439.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221337|ref|YP_001332159.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156979536|ref|YP_001441795.1| hypothetical protein SAHV_1205 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509387|ref|YP_001575046.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142005|ref|ZP_03566498.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253315573|ref|ZP_04838786.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006002|ref|ZP_05144603.2| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795729|ref|ZP_05644708.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|258415953|ref|ZP_05682223.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|258419700|ref|ZP_05682667.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|258444552|ref|ZP_05692881.1| formylmethionine deformylase [Staphylococcus aureus A8115]
 gi|258447615|ref|ZP_05695759.1| polypeptide deformylase [Staphylococcus aureus A6300]
 gi|258449457|ref|ZP_05697560.1| polypeptide deformylase 1 [Staphylococcus aureus A6224]
 gi|258452512|ref|ZP_05700518.1| polypeptide deformylase 1 [Staphylococcus aureus A5948]
 gi|258454836|ref|ZP_05702800.1| polypeptide deformylase 1 [Staphylococcus aureus A5937]
 gi|262048116|ref|ZP_06021003.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30]
 gi|262051848|ref|ZP_06024064.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3]
 gi|269202830|ref|YP_003282099.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282892701|ref|ZP_06300936.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|282919997|ref|ZP_06327726.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|282927555|ref|ZP_06335171.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|284024139|ref|ZP_06378537.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132]
 gi|294848208|ref|ZP_06788955.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|295407153|ref|ZP_06816954.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|296275236|ref|ZP_06857743.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1]
 gi|297245961|ref|ZP_06929820.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|304381222|ref|ZP_07363875.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|54036958|sp|P63922|DEFL_STAAN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|54040934|sp|P63921|DEFL_STAAM RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81694664|sp|Q5HGL7|DEFL_STAAC RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|13701015|dbj|BAB42310.1| SA1058 [Staphylococcus aureus subsp. aureus N315]
 gi|14246985|dbj|BAB57377.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|57285970|gb|AAW38064.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|87127278|gb|ABD21792.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202479|gb|ABD30289.1| polypeptide deformylase, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|147740775|gb|ABQ49073.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946216|gb|ABR52152.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374137|dbj|BAF67397.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156721671|dbj|BAF78088.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368196|gb|ABX29167.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257789701|gb|EEV28041.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|257839289|gb|EEV63763.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|257844285|gb|EEV68667.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|257850045|gb|EEV73998.1| formylmethionine deformylase [Staphylococcus aureus A8115]
 gi|257853806|gb|EEV76765.1| polypeptide deformylase [Staphylococcus aureus A6300]
 gi|257857445|gb|EEV80343.1| polypeptide deformylase 1 [Staphylococcus aureus A6224]
 gi|257859730|gb|EEV82572.1| polypeptide deformylase 1 [Staphylococcus aureus A5948]
 gi|257863219|gb|EEV85983.1| polypeptide deformylase 1 [Staphylococcus aureus A5937]
 gi|259160249|gb|EEW45277.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3]
 gi|259163682|gb|EEW48237.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30]
 gi|262075120|gb|ACY11093.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|269940707|emb|CBI49088.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282590558|gb|EFB95635.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|282594713|gb|EFB99697.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|282764698|gb|EFC04823.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|285816897|gb|ADC37384.1| Peptide deformylase [Staphylococcus aureus 04-02981]
 gi|294825008|gb|EFG41430.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|294968006|gb|EFG44034.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|297177125|gb|EFH36379.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|302751038|gb|ADL65215.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340205|gb|EFM06146.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829609|emb|CBX34451.1| polypeptide deformylase family protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315131006|gb|EFT86990.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315198452|gb|EFU28781.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140970|gb|EFW32817.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144315|gb|EFW36081.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329313884|gb|AEB88297.1| Peptide deformylase-like protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329724773|gb|EGG61278.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189]
 gi|329727640|gb|EGG64096.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172]
          Length = 162

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ ++  +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              + A   +A  + H +D +NGI F +   R+  D
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152


>gi|254818949|ref|ZP_05223950.1| peptide deformylase [Mycobacterium intracellulare ATCC 13950]
          Length = 197

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++P+       + +++  LI ++ + M +  G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTKPVPVAADGSLPAELPALIADLYDTMDAAHGVGLAANQIGVG 60

Query: 56  YRLVVIDLQDHAHRKNPM--VFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   R      V +NP + T        D     EGCLS+P       R+ 
Sbjct: 61  LRVFVYDCADERGRTERRRGVVVNPVLETSEVPETMPDPDNDDEGCLSVPGESFPTGRAK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     +  + L A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGNPVALEGNDLFARMLQHETGHLDGFLYLDRL 162


>gi|331017341|gb|EGH97397.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 179

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query: 14  LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65
           L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +LV+   +      
Sbjct: 13  LLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSERYP 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A      + +NP I           EGCLS+P  R  V R   I     D + Q     
Sbjct: 73  QAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGQPIERI 132

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           A G  A  +QHE DHL G L+   ++   +
Sbjct: 133 AHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|153952996|ref|YP_001393761.1| Def1 [Clostridium kluyveri DSM 555]
 gi|219853653|ref|YP_002470775.1| hypothetical protein CKR_0310 [Clostridium kluyveri NBRC 12016]
 gi|146345877|gb|EDK32413.1| Def1 [Clostridium kluyveri DSM 555]
 gi|219567377|dbj|BAH05361.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 161

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 14/139 (10%)

Query: 14  LRRVSRPIEK-----INSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHA 67
           L R S P+E+     I   I NL D +++     + G  +AA QIGV  RL+ + + +  
Sbjct: 13  LYRKSSPVEEKDIDLIKQTISNLHDTLIDFRKKYNAGRAIAAPQIGVFKRLIYMYIDE-- 70

Query: 68  HRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
               P++FINP I+TF + +     + C+S PD    VKR    TV Y D N +   I  
Sbjct: 71  ----PLIFINP-ILTFPNKEMMEVMDDCMSFPDLLVKVKRFKNCTVTYKDMNFKENSIKF 125

Query: 127 DGLLATCLQHELDHLNGIL 145
           +G L+  +QHE DHL+GIL
Sbjct: 126 EGDLSELIQHEYDHLDGIL 144


>gi|83592380|ref|YP_426132.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
 gi|83575294|gb|ABC21845.1| Peptide deformylase [Rhodospirillum rubrum ATCC 11170]
          Length = 169

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 6/141 (4%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----DLQDH 66
           P+L  ++RP+E   +  I  L+ +M+E +  + G+GLAA Q+ V  R+++     +    
Sbjct: 2   PVLAGIARPVEDPTDPKIHRLVADMIETLADSGGVGLAAPQVHVPLRVMIFHVPANRSTE 61

Query: 67  AHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           A    P+ V INP++    ++     EGCLS+P     V R   +  R +D + +     
Sbjct: 62  AEGAVPLTVLINPQLTPLGEEMVEDWEGCLSLPGLTGLVPRYRSLRYRGVDLDGREVERE 121

Query: 126 ADGLLATCLQHELDHLNGILF 146
           A    A  +QHE DHL+G+L+
Sbjct: 122 ARDFHARVVQHEYDHLDGVLY 142


>gi|297583895|ref|YP_003699675.1| peptide deformylase [Bacillus selenitireducens MLS10]
 gi|297142352|gb|ADH99109.1| peptide deformylase [Bacillus selenitireducens MLS10]
          Length = 194

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 4/153 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60
           ++KP    P P+     + +E +   + N  D      Y    G+GLAA QI V   + V
Sbjct: 15  LRKPAEEVPVPLSEEDRQTLEDMMQFLRNSQDPETAETYGLRPGVGLAAPQINVSKNMFV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDC 117
           +   +       M F+NPKII+ S + +     EGCLS+       V R + + V   D 
Sbjct: 75  VRFAEEDEEPIEMTFVNPKIISHSAETTHLPDGEGCLSVDRSVEGTVPRYSRVKVEATDE 134

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           N     I   G  A   QHE DHLNGI+F D +
Sbjct: 135 NGHSFTIRLRGFFAIVFQHEFDHLNGIMFYDRI 167


>gi|28868804|ref|NP_791423.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213969590|ref|ZP_03397726.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
 gi|301383364|ref|ZP_07231782.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
 gi|302058804|ref|ZP_07250345.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
 gi|302134493|ref|ZP_07260483.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|32363152|sp|Q886I1|DEF2_PSESM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|28852043|gb|AAO55118.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213925686|gb|EEB59245.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
          Length = 179

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query: 14  LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65
           L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +LV+   +      
Sbjct: 13  LLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSERYP 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A      + +NP I           EGCLS+P  R  V R   I     D + Q     
Sbjct: 73  QAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGQPIERI 132

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           A G  A  +QHE DHL G L+   ++   +
Sbjct: 133 AHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|330967399|gb|EGH67659.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 179

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query: 14  LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65
           L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +LV+   +      
Sbjct: 13  LLRIAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSERYP 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A      + +NP I           EGCLS+P  R  V R   I     D + Q     
Sbjct: 73  QAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGQPIERI 132

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           A G  A  +QHE DHL G L+   ++   +
Sbjct: 133 AHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|320527454|ref|ZP_08028635.1| peptide deformylase [Solobacterium moorei F0204]
 gi|320132167|gb|EFW24716.1| peptide deformylase [Solobacterium moorei F0204]
          Length = 195

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 27/166 (16%)

Query: 11  DPILRR----VSRPIEKINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGV 54
           +P++R     VS P+ K +     L+ +ML+ V  STD            +G++A+Q+G+
Sbjct: 20  NPLIREKSELVSLPLSKEDE---TLLRDMLQYVKDSTDEEKATKLNLRPAVGISAIQVGI 76

Query: 55  LYRLVVIDL----QDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRS 107
             R+  +      +D    K   + +NPKI++ S   +  +  EGCLS+  ++R  V R+
Sbjct: 77  KKRMCAVAFDETDKDGNMVKYEFMLVNPKIVSRSVQPAYLESGEGCLSVENEHRGYVVRN 136

Query: 108 AFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           A +T+R  D      + I A G +A  LQHELDH++GILF DH+++
Sbjct: 137 ARVTIRAFDLVQNQDVEIRARGYIAIVLQHELDHMDGILFYDHINK 182


>gi|227509423|ref|ZP_03939472.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191135|gb|EEI71202.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 188

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 24/170 (14%)

Query: 11  DPILRRVSRPIE--------KINSDIMNLID-----NMLEVMYSTDGIGLAAVQIGV--L 55
           DP+LR+ ++ ++        K+  D+M  ++      + E      G+GLAA Q+GV  +
Sbjct: 12  DPVLRQEAKKVKFPLSADDKKLAHDLMEYLEVSQNPELCEKYKLRAGVGLAAPQVGVSKM 71

Query: 56  YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAF 109
              V++   D   +  P+   V INP I++ S       EG  CLS+  D    V RSA 
Sbjct: 72  MASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGYVPRSAR 131

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156
           IT++Y D +     I      A   QHE+DHL+GILF DH+++    KRD
Sbjct: 132 ITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181


>gi|167563193|ref|ZP_02356109.1| peptide deformylase [Burkholderia oklahomensis EO147]
          Length = 177

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 14  LRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKN 71
           L  V++P+E  N+ ++  L+ +M E M+  +G GLAA Q+GV  ++++        + + 
Sbjct: 13  LLEVAKPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVIIFGFGSSERYPEA 72

Query: 72  P----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           P     V +NP +     D     EGCLS+P  R  V R   +     D   +     A+
Sbjct: 73  PPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQFGEKLERVAE 132

Query: 128 GLLATCLQHELDHLNGILF 146
           G  A  +QHE DHL G L+
Sbjct: 133 GFHARVVQHEYDHLIGKLY 151


>gi|300770446|ref|ZP_07080325.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762922|gb|EFK59739.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 430

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 13/131 (9%)

Query: 31  LIDNMLEVMYST------DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF-INPKIITF 83
           L+D + + MY+T       G+G+AA Q+G+      I +Q    +  P  F +NPKII  
Sbjct: 280 LLDLLSQRMYATVNDPDHSGVGIAAPQVGI--NKNAIWVQRFDKKDTPFEFYVNPKIIWR 337

Query: 84  SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--DGLLATCLQHELDHL 141
           S       EGCLSIP  + DV RS  I ++Y+  N    II    +G  A   QHE+DHL
Sbjct: 338 SKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYV--NKTGDIIEENIEGFTAVIFQHEVDHL 395

Query: 142 NGILFIDHLSR 152
            GILF D L  
Sbjct: 396 YGILFTDRLEE 406


>gi|224476206|ref|YP_002633812.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420813|emb|CAL27627.1| type II peptide deformylase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 184

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 17/158 (10%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRL 58
           P LR  ++ +E  ++++  N I  M E + ++             G+G+AA Q+ +  R+
Sbjct: 13  PTLREKAKEVEFPLSNEDRNKIQEMHEFLVNSQDDEIAKKYGLRSGVGIAAPQLNISKRM 72

Query: 59  VVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PDYRADVKRSAFITVRY 114
           + + L D    K+  ++ INPKI+++S  + +    EGCLS+  D    V R   +TV+ 
Sbjct: 73  LAVHLPDDGEGKSYELMLINPKIVSYSVQEAYLPTGEGCLSVDEDIPGLVHRHNRVTVKA 132

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            D +     +   G +A  +QHE+DHL+GI+F DH+ +
Sbjct: 133 KDIDGNDINLRLKGYIAIVVQHEIDHLDGIMFYDHIDK 170


>gi|170050375|ref|XP_001861255.1| peptide deformylase, mitochondrial [Culex quinquefasciatus]
 gi|167872016|gb|EDS35399.1| peptide deformylase, mitochondrial [Culex quinquefasciatus]
          Length = 236

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 25/167 (14%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           DP+LR+ ++  P E + S ++  L+  M++VM     +GLAA QIG+  R++V++ +D  
Sbjct: 45  DPVLRQKAQLVPPEAVTSPEVRFLVQAMIDVMRKYSCVGLAAPQIGISLRILVMEFKDKL 104

Query: 67  ------AHRK------------NP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
                 A  K             P   +V INP++   + +   + E C S+  + A+V 
Sbjct: 105 RDEYTSAEYKIKEMDTLPLTVGRPTFMVVLINPELKVTNYEKKSFTEACASVKGFSAEVP 164

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R + + +  +D N + + +   G  A   QHE+DHL+G+++ D + R
Sbjct: 165 RYSEVLLSGLDENGKSKELTLKGWNARIAQHEMDHLDGVIYTDVMDR 211


>gi|169350936|ref|ZP_02867874.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552]
 gi|169291998|gb|EDS74131.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552]
          Length = 189

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 9/118 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQ--EGCLS 96
            +G+AA+Q+G+  R+  I + D+  + N +       +NPKI++++   S  +  EGCLS
Sbjct: 58  AVGIAAIQLGIPKRMCAIHVLDYDSKGNVVKANDYALVNPKIVSYTQKNSFLRDGEGCLS 117

Query: 97  I-PDYRADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  + +  V R A +TV   D     ++ I A G L+ CLQHELDH  G LF D +++
Sbjct: 118 VNKEVQGYVPRHAKVTVEGYDLLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINK 175


>gi|329769034|ref|ZP_08260456.1| peptide deformylase 2 [Gemella sanguinis M325]
 gi|328839525|gb|EGF89101.1| peptide deformylase 2 [Gemella sanguinis M325]
          Length = 184

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 18/170 (10%)

Query: 1   MVKKPLVIFPDPILRR----VSRPIEKINSDIMNLI---------DNMLEVMYSTDGIGL 47
           +  K ++I P   LR+    V  PI   + +I+  +         D   E +    GIGL
Sbjct: 2   ITTKDIIIDPHETLRKRAEEVKSPISDEDKEILRSLLEYVIASQDDEKAEELGLKPGIGL 61

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNPMVFI--NPKIITFSDD--FSVYQEGCLSIPDYRAD 103
           AA QI V  R++ + + D  + +  + +   NPKII+ S    +    EGCLS+ + +  
Sbjct: 62  AAPQINVSKRMIAVHIPDEENPEYTVSYALYNPKIISNSAAKCYLAGGEGCLSVEEEKKG 121

Query: 104 -VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V R + I V   D N +   +    L A C QHE+DHLNGI+F DH+++
Sbjct: 122 YVPRYSKIKVIGYDENDEKVTLVLTDLPAICFQHEIDHLNGIMFYDHINK 171


>gi|332830436|gb|EGK03064.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286]
          Length = 189

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 18/138 (13%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGV---LYRLVVIDLQDHAHRKNPMVFINPKII 81
           + D  + I  +   +    G+G+AA Q+GV   L+    ID  D A      V INP+I+
Sbjct: 47  DKDWQHFIQRLKLTLAVESGVGIAAPQVGVGRNLFLFTRIDRPDKA----IQVAINPRIV 102

Query: 82  TFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY--------ADGLLAT 132
             SD+   ++ +GCLS+PD     KR A+I V Y   N + ++I                
Sbjct: 103 NHSDETICFEGDGCLSVPDLSGSTKRYAWIDVEYY--NEKGELIKERLSGQSRGSDFTGI 160

Query: 133 CLQHELDHLNGILFIDHL 150
             QHE DHL GILFID L
Sbjct: 161 IFQHEFDHLQGILFIDRL 178


>gi|145491449|ref|XP_001431724.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398829|emb|CAK64326.1| unnamed protein product [Paramecium tetraurelia]
          Length = 180

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 7/113 (6%)

Query: 39  MYSTDGIGLAAVQIGVLYRL-VVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQE 92
           ++S + + LAA Q+G   RL V  DL+    +K        V++NP+II  S+D  V +E
Sbjct: 53  LHSIEALALAAPQVGWEKRLFVCADLELQQRKKAKYIQKVDVYLNPEIIKKSNDLIVSKE 112

Query: 93  GCLSIPDYR-ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
            CLSIP  + A V RS  IT++Y +      ++ A+GL A   QHE+DHL+GI
Sbjct: 113 NCLSIPPNQIACVMRSNKITMKYYNLLGIEMVVEAEGLQACIYQHEIDHLDGI 165


>gi|77024073|gb|ABA55507.1| chloroplast peptide deformylase [Isochrysis galbana]
          Length = 200

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 1/107 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P P+LR  +  +   +  +  L   M  +MY++ G+GLAA Q+G+  RL+V + +    
Sbjct: 89  YPHPLLRAPNSEVVSFDDSLRKLTREMFAIMYASRGVGLAAPQLGINKRLMVFNPEGKKE 148

Query: 69  RK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +  + +V  NP+I+         +EGCLS P + ADV R+ +I V +
Sbjct: 149 KWMSEVVLCNPRIVERGAGKETDEEGCLSFPGFTADVDRAGWIQVEF 195


>gi|218283087|ref|ZP_03489182.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989]
 gi|218216156|gb|EEC89694.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989]
          Length = 186

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 9/113 (7%)

Query: 44  GIGLAAVQIGVLYRL--VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP- 98
            +G+AAVQ+GVL ++  VVI  +D     + +  +NPKII+ S  + +    EGCLS+  
Sbjct: 62  AVGIAAVQVGVLKQMIAVVIPYEDGV---DEVALVNPKIISESVQNAYLDNGEGCLSVKG 118

Query: 99  DYRADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           ++   V R A I VR  D    ++  I A+G  A CLQHE+DHL+G LF DH+
Sbjct: 119 EHPGHVFRHARIKVRGYDLIQDKNVTISAEGYFAICLQHEIDHLSGTLFYDHI 171


>gi|325923638|ref|ZP_08185267.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
 gi|325545882|gb|EGD17107.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
          Length = 171

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68
           D  L RV+ P+  + S ++  L+ +M E M    G+GLAA QI V  +L+V   +    +
Sbjct: 10  DKRLLRVAPPVTNLGSAELRTLVADMFETMDDARGVGLAAPQIAVDLQLMVFGFEASERY 69

Query: 69  RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P V      N +I   S++     EGCLSIP  RA + R  FI  R    +      
Sbjct: 70  PEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGSPIER 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 EAEGFHARVVQHEYDHLVGRLY 151


>gi|237798881|ref|ZP_04587342.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021735|gb|EGI01792.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 179

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query: 14  LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65
           L RV+ P+      +S++  LI +M E M+S  G+GLAA QIG+  +LV+   +      
Sbjct: 13  LLRVAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSERYP 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A      + +NP I     +     EGCLS+P  R  V R   I     D +       
Sbjct: 73  EAEAVPQTILLNPLITPLGPNMEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGLPIERV 132

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           A G  A  +QHE DHL G L+   ++   +
Sbjct: 133 AHGFHARVVQHECDHLIGRLYPSRITDFSK 162


>gi|82701784|ref|YP_411350.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
 gi|82409849|gb|ABB73958.1| Peptide deformylase [Nitrosospira multiformis ATCC 25196]
          Length = 177

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   DP L  V+R +E  ++ +   L+ +M + M + +G GLAA QIG+  ++V
Sbjct: 1   MPIKPVLKMGDPRLLEVARKVENFSTPEFGALLRDMHDTMEALEGAGLAAPQIGIDLQVV 60

Query: 60  VIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +  ++ +     A      V +NP +   ++      EGCLS+P  R  V R A I    
Sbjct: 61  IFGVKRNLRYPDAEEVPYTVLVNPVLTPLTEYMEQDWEGCLSVPGMRGMVPRYARIRYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
            D          +G  A  +QHE DHL GIL+
Sbjct: 121 SDQYGNRIDRTVEGFHARVVQHECDHLQGILY 152


>gi|294498110|ref|YP_003561810.1| peptide deformylase [Bacillus megaterium QM B1551]
 gi|295703459|ref|YP_003596534.1| peptide deformylase [Bacillus megaterium DSM 319]
 gi|294348047|gb|ADE68376.1| peptide deformylase [Bacillus megaterium QM B1551]
 gi|294801118|gb|ADF38184.1| peptide deformylase [Bacillus megaterium DSM 319]
          Length = 184

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 12  PILRRVSR--PIEKINSD----------IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRL 58
           P LR V++  P+     D          + N  D  +   Y    GIGLAA QI V  R+
Sbjct: 13  PTLREVAKEVPLPASEEDKKILHSLLEYVKNSQDPEIAAKYGLRSGIGLAAPQINVSKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI-PDYRADVKRSAFITVRYM 115
           + + + D   +       NPKII+ S    +    EGCLS+  D    V R A ITV+  
Sbjct: 73  IGVHVTDEKGKLYSYALFNPKIISHSVEKTYLTGGEGCLSVDQDIPGFVPRYARITVKGT 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               +   I   GL A   QHE+DHL+GI+F D++++
Sbjct: 133 TLEGEEVKIRLKGLPAVVFQHEIDHLDGIMFYDYINK 169


>gi|312865443|ref|ZP_07725670.1| peptide deformylase [Streptococcus downei F0415]
 gi|311098961|gb|EFQ57178.1| peptide deformylase [Streptococcus downei F0415]
          Length = 204

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 31/170 (18%)

Query: 11  DPILRRVSRPIEKINSD--------IMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57
           +P LR V++ +E   SD        +M  + N     M E M    G+GLAA Q+ +  R
Sbjct: 24  NPTLREVAKDVELPLSDEDIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQLDISKR 83

Query: 58  LVVIDLQDHAHRK-NP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRA 102
           ++ + + +   ++ NP         V  NP+I++ S  D      EGCLS+    P Y  
Sbjct: 84  IIAVLVPNPEDKEGNPPAQPYSMQEVMYNPRIVSHSVQDAALADGEGCLSVDREVPGY-- 141

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V R + +TV Y+D N   Q I   G  +  +QHE+DH NGI+F DH++ 
Sbjct: 142 -VVRHSRVTVEYVDKNGDKQKIKLRGYNSMVVQHEIDHTNGIMFYDHINE 190


>gi|119713702|gb|ABL97752.1| peptide deformylase [uncultured marine bacterium EB0_41B09]
          Length = 163

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 6/150 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           +PIL + +  +EK ++ +I  LI +M++ M    G GLAA Q+G   +LV+  +  +   
Sbjct: 3   NPILLKEAEKVEKFDTPEIHELIKDMIKTMKDAQGAGLAAPQVGESIQLVIFGVDKNERY 62

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A      V INP I   + +     EGCLS+P  R  V R   I  +  D        
Sbjct: 63  PEAEEVPFTVLINPVITPLNQEKEDDWEGCLSVPGMRGVVPRYKTINYKGFDQYGNEIDR 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLK 154
             +G  A  +QHE DHL GIL+   +  +K
Sbjct: 123 DVEGFHARVVQHECDHLFGILYPSRIEDMK 152


>gi|256831860|ref|YP_003160587.1| Peptide deformylase [Jonesia denitrificans DSM 20603]
 gi|256685391|gb|ACV08284.1| Peptide deformylase [Jonesia denitrificans DSM 20603]
          Length = 245

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 75/161 (46%), Gaps = 11/161 (6%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           PLV    P+LRR +   E ++ +D M  ID M   M    G+GLAA Q+GV   + V+  
Sbjct: 51  PLVHAGHPVLRREAGRYEGQLGADFMAFIDAMNTTMVVAPGVGLAAPQVGVSLAVAVMRD 110

Query: 64  QDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              A   +P         V +NP      D+   + EGCLS+P Y+A V R   + V   
Sbjct: 111 PGAADDADPRERVAFPMRVLVNPVYEPVGDEKVSFFEGCLSVPGYQAVVARWRRVRVMGW 170

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFID--HLSRLK 154
           D           G  A   QHE+DHL G+L++D  HL  L 
Sbjct: 171 DETGAPVDEVLTGWPARIAQHEIDHLRGVLYVDRAHLRSLS 211


>gi|38049247|gb|AAR10418.1| putative peptide deformylase [Enterococcus faecium]
          Length = 160

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 5/113 (4%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY---QEGCLSIP-D 99
           G+GL+A QIG+  R+ V  L D   +K+    INPKII+ S    +Y    EGCLS+  D
Sbjct: 35  GVGLSANQIGLNKRMFVAYLTDEKGKKHEYTLINPKIISHSVSM-IYLSPSEGCLSVDRD 93

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  V R   I V+  +   +  ++   G  +  +QHE+DHLNGI+F + +++
Sbjct: 94  IKGFVPRYERIKVKGFNLEGEEIVLKLKGYSSIVIQHEIDHLNGIMFYERINK 146


>gi|258438742|ref|ZP_05689895.1| formylmethionine deformylase [Staphylococcus aureus A9299]
 gi|257848001|gb|EEV71994.1| formylmethionine deformylase [Staphylococcus aureus A9299]
          Length = 162

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ ++  +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDME----MEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVIRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              + A   +A  + H +D +NGI F +   R+  D
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152


>gi|23098865|ref|NP_692331.1| peptide deformylase [Oceanobacillus iheyensis HTE831]
 gi|32363150|sp|Q8ER96|DEF_OCEIH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22777092|dbj|BAC13366.1| formylmethionine deformylase [Oceanobacillus iheyensis HTE831]
          Length = 183

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 16/156 (10%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58
           P L R +  +E  ++ D   L+++M++ + ++             G+G+AA Q+G+  ++
Sbjct: 13  PSLTRSAAVVEVPLSKDDKQLLEDMMQFLKNSQDEEIAEKYELRAGVGIAAPQLGIEKQI 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRYM 115
           + I  +D   +   M  +NPKII+ S + S     EGCLS+       V R A IT++  
Sbjct: 73  IAIHFEDIDGKLYSMGLVNPKIISHSVEQSYLSSGEGCLSVDRPVEGYVPRHARITIKAT 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           D N Q   +   G  A   QHE+DH+NGI+F D ++
Sbjct: 133 DINDQPVKLRLKGYPAIVFQHEIDHINGIMFFDRIN 168


>gi|82750819|ref|YP_416560.1| peptide deformylase [Staphylococcus aureus RF122]
 gi|82656350|emb|CAI80768.1| probable peptide deformylase 1 [Staphylococcus aureus RF122]
 gi|323440990|gb|EGA98697.1| peptide deformylase [Staphylococcus aureus O11]
 gi|323442306|gb|EGA99936.1| peptide deformylase [Staphylococcus aureus O46]
          Length = 162

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  +NPKII  S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDME----MEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              + A   +A  + H +D +NGI F +   R+  D
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTD 152


>gi|167756524|ref|ZP_02428651.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402]
 gi|167702699|gb|EDS17278.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402]
          Length = 189

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 9/118 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQ--EGCLS 96
            +G+AA+Q+G+  R+  I + D     N +       +NPKII+ ++  S  +  EGCLS
Sbjct: 58  AVGIAAIQLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLS 117

Query: 97  IPDY-RADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           + D  +  V R A +TV+  D     ++ I A G L+ CLQHELDH  G LF D +++
Sbjct: 118 VNDEVQGYVPRYAKVTVKGYDVLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINK 175


>gi|293400829|ref|ZP_06644974.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305855|gb|EFE47099.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 185

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 17/158 (10%)

Query: 11  DPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTD-----------GIGLAAVQIGVLYR 57
           DPI+R   V+ PI     D   L+D +  V  S D            +G+AA+Q+G+  +
Sbjct: 13  DPIVREKSVTVPIPMHEEDKELLMDMLQYVRDSQDSELAEKQNLRPAVGIAAIQLGIPKK 72

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAFITVRY 114
           ++ + +             NPKII+ S   +  +  EGCLS+ + +   V R+A I V+ 
Sbjct: 73  MLAVVVPKDEEEDYEFALANPKIISESIQKAYLKNGEGCLSVEEEHEGIVPRAARIKVKG 132

Query: 115 MDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
            D     +I I A G LA  LQHE+DH NG LF DH++
Sbjct: 133 FDLLRNEEIVISASGYLAIVLQHEMDHFNGTLFYDHIN 170


>gi|253577418|ref|ZP_04854734.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843218|gb|EES71250.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 193

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           DPILR V+ P+      +    +  ML+ + ++             G+GL+A QIG+  R
Sbjct: 20  DPILRVVTEPVSIPPTEEDREEMAAMLQFLKNSQDPEMSKKYKLRAGVGLSANQIGLNKR 79

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIP-DYRADVKRSAFITVRY 114
           +    L D   +  P+   NPKII+ S   +     EGCLS+    +  V R   + V+ 
Sbjct: 80  MFAALLMDENGKDRPLALYNPKIISHSQAMTYLPESEGCLSVDRTVQGFVPRYEKVQVKA 139

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            D       +   G  A  +QHE+DHLNGI+F DH++
Sbjct: 140 YDDEGNEIKLRFKGFDAIVMQHEIDHLNGIMFYDHIN 176


>gi|237745527|ref|ZP_04576007.1| peptide deformylase [Oxalobacter formigenes HOxBLS]
 gi|229376878|gb|EEO26969.1| peptide deformylase [Oxalobacter formigenes HOxBLS]
          Length = 174

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 6/139 (4%)

Query: 14  LRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKN 71
           L R S P+ + N+ ++  L+ +M E M +  G GLAA QIGVL R+V+    +++ + + 
Sbjct: 14  LLRESEPVREFNTPELDELVSDMFETMQAAQGAGLAAPQIGVLKRVVIFGYDENNRYPEA 73

Query: 72  P----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           P     V INP I   +D+     EGCLSIP  R  V R A I     D   +     A+
Sbjct: 74  PPVPETVLINPVIRPLTDEIDEGWEGCLSIPGMRGVVPRWARIHYEGFDQFGKRISRDAE 133

Query: 128 GLLATCLQHELDHLNGILF 146
           G  A  +QHE DHL+GIL+
Sbjct: 134 GFHARVVQHECDHLDGILY 152


>gi|331701103|ref|YP_004398062.1| peptide deformylase [Lactobacillus buchneri NRRL B-30929]
 gi|329128446|gb|AEB72999.1| Peptide deformylase [Lactobacillus buchneri NRRL B-30929]
          Length = 188

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 27/166 (16%)

Query: 11  DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTD---------GIGLAAVQIGV--L 55
           DP+LR+ ++    P+ K +  + + +   LEV    +         G+GLAA Q+GV  +
Sbjct: 12  DPVLRKQAQKVKFPLSKEDKQLAHDLMEYLEVSQDPEQCEKLGLRAGVGLAAPQVGVSEM 71

Query: 56  YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLS----IPDYRADVKR 106
              V++  +D   +  P+   V INP I++ S       EG  CLS    IP Y   V R
Sbjct: 72  MASVLVPSEDEDEKDEPVFKDVIINPVIVSNSVQRGALTEGEGCLSVDKDIPGY---VPR 128

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +A IT++Y D + +   +      A   QHE+DHL+G LF DH+++
Sbjct: 129 AARITLKYQDVDGKEHKVRLKNYPAIVCQHEIDHLHGTLFYDHINK 174


>gi|91775819|ref|YP_545575.1| peptide deformylase [Methylobacillus flagellatus KT]
 gi|91709806|gb|ABE49734.1| Peptide deformylase [Methylobacillus flagellatus KT]
          Length = 177

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   +P+L + + P+++ ++ ++  LI +M + M   +G G+AA QIGV  R+V
Sbjct: 1   MPVKPVLKMGEPLLLQKAEPVQQFDTPELHALIKDMEDTMAHLNGAGIAAPQIGVSLRVV 60

Query: 60  VIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +  +  +     A +    V +NP +    ++     EGCLS+P  R  V R   +    
Sbjct: 61  IFGVGHNPRYPDAEQVPYTVLVNPTLTPIGEELEDGWEGCLSVPGMRGIVPRYQRLHYTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
            D           G  A  +QHE DHL+GIL+
Sbjct: 121 YDQYGNPIDRLVSGFHARVVQHECDHLDGILY 152


>gi|307822304|ref|ZP_07652536.1| peptide deformylase [Methylobacter tundripaludum SV96]
 gi|307736870|gb|EFO07715.1| peptide deformylase [Methylobacter tundripaludum SV96]
          Length = 178

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 6/145 (4%)

Query: 13  ILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-----H 66
           +LR+ +  +  ++  +I  +I+ M   + +T G+G+AA QI  L ++++I  +       
Sbjct: 14  VLRQKAEAVADVHDVEIRQIIEAMQSTLATTSGVGIAAPQISKLKQIIIIASRPTPRYPS 73

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
           A    P V INP     S+      EGCLS+P  RA V R   I + Y D          
Sbjct: 74  APLMEPTVMINPCFEVLSEAQEKGWEGCLSVPGIRALVPRYQEIMIHYTDQQGGLVESKL 133

Query: 127 DGLLATCLQHELDHLNGILFIDHLS 151
            G +A   QHE+DHL G  ++D + 
Sbjct: 134 SGFVARIFQHEVDHLEGKTYLDRVE 158


>gi|253581454|ref|ZP_04858679.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725]
 gi|251836524|gb|EES65059.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725]
          Length = 161

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 14/151 (9%)

Query: 2   VKKPLVIFPDPILRRVSRP-----IEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55
           +KK +++  +  L ++S P     IE I   + NL D +L+       G  +AA QIGV 
Sbjct: 1   MKKEILLLGNEELYQISEPLKKDEIENIKFIVQNLHDTLLDFREKYHAGRAIAAPQIGVK 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRY 114
            RL+ + +        P++FINP ++ F DD      + C+S P+    VKR     ++Y
Sbjct: 61  KRLLYMFID------KPVIFINP-VLEFPDDEMMEVLDDCMSFPNLLVKVKRYKRCRIKY 113

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +D + + Q +  +G LA  LQHE DHL+GIL
Sbjct: 114 LDMDWKEQEMSLEGDLAELLQHEYDHLDGIL 144


>gi|237733122|ref|ZP_04563603.1| polypeptide deformylase [Mollicutes bacterium D7]
 gi|229383804|gb|EEO33895.1| polypeptide deformylase [Coprobacillus sp. D7]
          Length = 186

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 9/118 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQ--EGCLS 96
            +G+AA+Q+G+  R+  I + D     N +       +NPKII+ ++  S  +  EGCLS
Sbjct: 55  AVGIAAIQLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLS 114

Query: 97  IPDY-RADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           + D  +  V R A +TV+  D     ++ I A G L+ CLQHELDH  G LF D +++
Sbjct: 115 VNDEVQGYVPRYAKVTVKGYDILTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINK 172


>gi|302332819|gb|ADL23012.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 162

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  +NPKII  S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDME----MEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D +NGI F +   R+
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149


>gi|242242497|ref|ZP_04796942.1| possible peptide deformylase [Staphylococcus epidermidis W23144]
 gi|242234071|gb|EES36383.1| possible peptide deformylase [Staphylococcus epidermidis W23144]
          Length = 162

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL ++ +P+   +  +  L++++ + +Y  +   ++A QIGV   + +
Sbjct: 1   MTVKKLVKSTHPILNKMIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++  +  INP + + S +     EG +S+P    +VKRS  ITV+  D N  
Sbjct: 61  IDME----QEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
              + A   +A  + H +DHLNGI F
Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQF 142


>gi|209736128|gb|ACI68933.1| Peptide deformylase, mitochondrial precursor [Salmo salar]
          Length = 249

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           +P+LR  +  ++        +  +I  M++VM   + +GL+A Q+GV  R++ ++  +  
Sbjct: 78  EPVLRAQAAAVDPGAVQGPAVQEVIHTMVKVMRKFECVGLSAPQVGVPLRILALEFPERM 137

Query: 67  ------AHRKN------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                 A R+       P+ +FINP++        ++QE C SI  + A V R   + V 
Sbjct: 138 LEDSLPAAREARGLTAVPLRIFINPQLRVLDGRTVLFQEACESISGFSATVPRYLSVEVS 197

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++  A+       G  A  LQHE+DHL+G+L+ID +
Sbjct: 198 GLNEKAEPVTWQVSGWPARILQHEMDHLDGVLYIDRM 234


>gi|27467808|ref|NP_764445.1| putative polypeptide deformylase [Staphylococcus epidermidis ATCC
           12228]
 gi|57866753|ref|YP_188364.1| polypeptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251810645|ref|ZP_04825118.1| possible peptide deformylase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876353|ref|ZP_06285220.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|39931130|sp|Q8CPI9|DEFL_STAES RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81674925|sp|Q5HPX6|DEFL_STAEQ RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|27315352|gb|AAO04487.1|AE016746_277 putative polypeptide deformylase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637411|gb|AAW54199.1| polypeptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251805805|gb|EES58462.1| possible peptide deformylase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295378|gb|EFA87905.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|319401492|gb|EFV89702.1| polypeptide deformylase family protein [Staphylococcus epidermidis
           FRI909]
 gi|329730010|gb|EGG66401.1| peptide deformylase [Staphylococcus epidermidis VCU144]
 gi|329736235|gb|EGG72507.1| peptide deformylase [Staphylococcus epidermidis VCU028]
          Length = 162

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL +  +P+   +  +  L++++ + +Y  +   ++A QIGV   + +
Sbjct: 1   MTVKKLVKSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++  +  INP + + S +     EG +S+P    +VKRS  ITV+  D N  
Sbjct: 61  IDME----QEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
              + A   +A  + H +DHLNGI F
Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQF 142


>gi|227538920|ref|ZP_03968969.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241123|gb|EEI91138.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 432

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 13/131 (9%)

Query: 31  LIDNMLEVMYST------DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF-INPKIITF 83
           L++ + + MY+T       G+G+AA Q+G+      I +Q    +  P  F +NPKII  
Sbjct: 282 LLELLSQRMYATVNDPDHSGVGIAAPQVGI--NKNAIWVQRFDKKDTPFEFYVNPKIIWR 339

Query: 84  SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--DGLLATCLQHELDHL 141
           S       EGCLSIP  + DV RS  I ++Y+  N    II    +G  A   QHE+DHL
Sbjct: 340 SKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYV--NKTGDIIEENIEGFTAVIFQHEVDHL 397

Query: 142 NGILFIDHLSR 152
            GILF D L  
Sbjct: 398 YGILFTDRLEE 408


>gi|187777978|ref|ZP_02994451.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC
           15579]
 gi|187774906|gb|EDU38708.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC
           15579]
          Length = 166

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 11/169 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M  K +++  D IL R+S  I+K N D    ++N + + +    +  G G  +AA QIG 
Sbjct: 1   MPTKSILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L    H      FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGYKTH-----YFINPVLEFIGDDTFQLWDDCMSFPGLEVYVERYKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K  S
Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINKNKS 164


>gi|253999126|ref|YP_003051189.1| peptide deformylase [Methylovorus sp. SIP3-4]
 gi|253985805|gb|ACT50662.1| peptide deformylase [Methylovorus sp. SIP3-4]
          Length = 177

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 20/159 (12%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  +P++   DP+L + + P+   ++ ++  LI +M + M   +G G+AA QIGV  R+V
Sbjct: 1   MPIRPVLRMGDPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVV 60

Query: 60  VIDLQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +  +      KNP           V +NP +   +DD     EGCLS+P  R  V R  +
Sbjct: 61  IFGVG-----KNPRYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPR--Y 113

Query: 110 ITVRYMDCNAQHQII--YADGLLATCLQHELDHLNGILF 146
           + + Y   +     I     G  A  +QHE DHL+GIL+
Sbjct: 114 VRLHYTGFDQYGNPIDRLVSGFHARVVQHECDHLDGILY 152


>gi|196004180|ref|XP_002111957.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens]
 gi|190585856|gb|EDV25924.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens]
          Length = 201

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 14/145 (9%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD------HAHRKN-- 71
           P   +++D+  LID M++ M S   +G+AA Q+G   R++ +++         A  +N  
Sbjct: 49  PTAIVSTDVKKLIDRMIKTMRSHGDLGIAAPQLGRPLRIITLEITKRHLSYLQAQYRNVV 108

Query: 72  -----PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                P+ V INP++    +      E C SI +  A V R   + V  +D +       
Sbjct: 109 QRDTVPLQVLINPQLKVLDNHKVAEYESCSSIHNCMAKVPRYTTVEVSALDRHGNRINYI 168

Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150
           ADG L+  LQHE+DHL+G+L++D +
Sbjct: 169 ADGWLSRILQHEVDHLDGLLYVDKM 193


>gi|284991544|ref|YP_003410098.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
 gi|284064789|gb|ADB75727.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
          Length = 177

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 5/150 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +  DP+LR  + P+   + ++  L+ ++ + M++  G GLAA QIGV  R+  
Sbjct: 1   MSVTPIRLLGDPVLRTPAAPVVDFDQELRRLVADLTDTMFAAGGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            +NP++    ++     EGCLSIP Y  D +R  ++     D + +
Sbjct: 61  WYVDGEVGH-----LVNPEVTPVGEETEEGPEGCLSIPGYTFDCRRHLYVAATGFDLHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              +    LLA  +QHE+DHL+G+LF+D L
Sbjct: 116 PVRVEGSHLLARAVQHEVDHLDGVLFVDRL 145


>gi|330833559|ref|YP_004402384.1| polypeptide deformylase [Streptococcus suis ST3]
 gi|329307782|gb|AEB82198.1| polypeptide deformylase [Streptococcus suis ST3]
          Length = 204

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 12/128 (9%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFSD 85
           M E M    G+GLAA QI V  R++ + + +      NP         V  NPKI+  S 
Sbjct: 61  MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSV 120

Query: 86  DFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
             +  +  EGCLS+  + +  V R A +TV YMD N +   I   G  A  +QHE+DHLN
Sbjct: 121 QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 180

Query: 143 GILFIDHL 150
           GI+F D +
Sbjct: 181 GIMFYDRI 188


>gi|293366820|ref|ZP_06613496.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319121|gb|EFE59491.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736680|gb|EGG72946.1| peptide deformylase [Staphylococcus epidermidis VCU045]
          Length = 162

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL +  +P+   +  +  L++++ + +Y  +   ++A QIGV   + +
Sbjct: 1   MTVKKLVNSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++  +  INP + + S +     EG +S+P    +VKRS  ITV+  D N  
Sbjct: 61  IDME----QEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
              + A   +A  + H +DHLNGI F
Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQF 142


>gi|308177361|ref|YP_003916767.1| peptide deformylase [Arthrobacter arilaitensis Re117]
 gi|307744824|emb|CBT75796.1| peptide deformylase [Arthrobacter arilaitensis Re117]
          Length = 190

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + ++ +P+L + +  + + +  +  L+ +M   M    G+GLAA QIG+  R+      D
Sbjct: 6   ITVYGEPVLHKRAVEVTEFDDALRALVADMHLTMDEAHGVGLAAPQIGLGLRMFTYVFAD 65

Query: 66  HAHRKNPMVFINPKII--------TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
                   V INPK+            D+ S   EGCLS+P     ++R+ +  V   D 
Sbjct: 66  QDDAPERGVVINPKLTLSKVSQAPAHPDEDS---EGCLSVPGLNYPLQRADYAKVEGFDE 122

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                   A G  A  +QHE DHL+G L++D L
Sbjct: 123 FGNPISFEAHGWFARIMQHEYDHLDGYLYVDKL 155


>gi|78049192|ref|YP_365367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325926668|ref|ZP_08187982.1| peptide deformylase [Xanthomonas perforans 91-118]
 gi|78037622|emb|CAJ25367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325543020|gb|EGD14469.1| peptide deformylase [Xanthomonas perforans 91-118]
          Length = 171

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 8/143 (5%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V    D + R
Sbjct: 10  DKRLLRVAPPVSNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASER 68

Query: 70  --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             + P V      N +I   S++     EGCLSIP  RA + R  FI  R    +     
Sbjct: 69  YPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGTPIE 128

Query: 124 IYADGLLATCLQHELDHLNGILF 146
             A+G  A  +QHE DHL G L+
Sbjct: 129 RDAEGFHARVVQHEYDHLVGRLY 151


>gi|294624946|ref|ZP_06703599.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294665783|ref|ZP_06731054.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600746|gb|EFF44830.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292604435|gb|EFF47815.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 171

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 8/143 (5%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V    D + R
Sbjct: 10  DKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASER 68

Query: 70  --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             + P V      N +I   S++     EGCLSIP  RA + R  FI  R    +     
Sbjct: 69  YPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGSPIE 128

Query: 124 IYADGLLATCLQHELDHLNGILF 146
             A+G  A  +QHE DHL G L+
Sbjct: 129 RDAEGFHARVVQHEYDHLVGRLY 151


>gi|322784370|gb|EFZ11341.1| hypothetical protein SINV_03231 [Solenopsis invicta]
          Length = 239

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 21/159 (13%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           DP+LR  +  IE      +D   +I  ++ VM + D  GL+  QIG+ +++  I+  +  
Sbjct: 55  DPVLRGRTMKIEPEVIRMADFQKVIKRLINVMRAYDAYGLSGPQIGLPWQIFAIECTEKT 114

Query: 67  ----------AHRKN--PM-VFINP--KIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
                     AH  N  PM +FINP  K+I ++   ++Y+E C SI  Y A V R+  + 
Sbjct: 115 MKGVEESVRKAHEMNVVPMTIFINPELKVIDYTP-ITLYEE-CASIQGYSAAVPRAYEVE 172

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  ++ +A+     A G  A   QHE DHL G L+I+ +
Sbjct: 173 ITALNASAEQFTWRARGWSARIAQHEYDHLQGKLYIEKM 211


>gi|47459452|ref|YP_016314.1| formylmethionine deformylase [Mycoplasma mobile 163K]
 gi|47458782|gb|AAT28103.1| formylmethionine deformylase [Mycoplasma mobile 163K]
          Length = 184

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 14/131 (10%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQ--EGCLSI 97
           G+G+AAVQ G+L ++  + + D     N +VF    INPK++  S      +  EGCLS+
Sbjct: 55  GVGVAAVQYGILKQMFYVYITD---EDNKVVFEDLMINPKVLAKSTSKIALRTGEGCLSV 111

Query: 98  ----PDYRADVKRSAFITVRYMDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSR 152
               P+    VKRS  I V+      + ++ +  +G  A   QHELDHLNG LFIDH+ +
Sbjct: 112 NEEHPNQEGYVKRSKRIVVKGYSYFKKEEVTHDLNGYPAIVFQHELDHLNGKLFIDHIDK 171

Query: 153 LKRDMITKKMS 163
                I K + 
Sbjct: 172 ENNWFIEKDLE 182


>gi|94310371|ref|YP_583581.1| peptide deformylase [Cupriavidus metallidurans CH34]
 gi|93354223|gb|ABF08312.1| polypeptide or peptide deformylase [Cupriavidus metallidurans CH34]
          Length = 177

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 6/135 (4%)

Query: 18  SRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP---- 72
           +RP+ + N+ ++  LID+M + M   +G GLAA QIGV  ++V+     +    +     
Sbjct: 17  ARPVTQFNTPELRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVIFGFDRNPRYPDAPTVP 76

Query: 73  -MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V INP +   SD+     EGCLS+P  R  V R   +     D         A+   A
Sbjct: 77  KTVLINPSLEPLSDEMDDGWEGCLSVPGLRGVVPRYTRLKYTGFDMMGNRIERVAEDFHA 136

Query: 132 TCLQHELDHLNGILF 146
             +QHE DHL G+L+
Sbjct: 137 RVVQHECDHLIGVLY 151


>gi|257870629|ref|ZP_05650282.1| peptide deformylase [Enterococcus gallinarum EG2]
 gi|257804793|gb|EEV33615.1| peptide deformylase [Enterococcus gallinarum EG2]
          Length = 187

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 28/166 (16%)

Query: 11  DPILRRVSRPIE--------KINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR V++ +         ++  D+M  ++N  + + + +     G+GLAA Q+ +  R
Sbjct: 12  NPTLREVAKEVPFPLSEADIQLGKDMMEFLENSQDPVKAEELNLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKR 106
           +  + L   +  +NP      V  NPKI++ S   +   EG  CLS+    P Y   V R
Sbjct: 72  ITAV-LVPSSDPENPEPEFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGY---VVR 127

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            A IT+ Y D   + Q +      A  +QHE+DHLNG++F DH++ 
Sbjct: 128 HARITISYYDMQGKKQKVRLKNYAAIVVQHEIDHLNGVMFYDHINE 173


>gi|226940980|ref|YP_002796054.1| Peptide deformylase [Laribacter hongkongensis HLHK9]
 gi|226715907|gb|ACO75045.1| Peptide deformylase [Laribacter hongkongensis HLHK9]
          Length = 183

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 11/161 (6%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L   + P+    +  +  L++++ E M    G GLAA QIG   ++VV    +   R
Sbjct: 11  DPRLLLSAEPVTAFGTPQLTRLVEDLWETMKVHSGAGLAAPQIGENLQVVVFGTGEPNPR 70

Query: 70  KN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                   P V INP +           EGCLS+P  R  V R  + +VRY   +   Q 
Sbjct: 71  YPDAGIVPPTVLINPIVTPLGASMEDGWEGCLSLPGLRGAVPR--YASVRYQGFDLYGQP 128

Query: 124 I--YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           I    +G  A  +QHE DHL G L+   +  + R   T  +
Sbjct: 129 IDRTVEGFHARVVQHECDHLWGFLYPMRMKDMSRFGFTDTL 169


>gi|310819401|ref|YP_003951759.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|309392473|gb|ADO69932.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 200

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 17/158 (10%)

Query: 11  DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL--------- 58
           +P+LR+ +R   P E  + ++  LI  M + M    G+GLAA Q+GV  RL         
Sbjct: 10  EPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRLVVVEDRAEY 69

Query: 59  -VVIDLQD-HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            V I  +D  A  + P+   V INP ++        + EGCLS+  + A V R+  + V 
Sbjct: 70  HVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALVPRARGVRVE 129

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +D +     + A G  A  LQHE DHL G L++D + 
Sbjct: 130 ALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRME 167


>gi|302024517|ref|ZP_07249728.1| peptide deformylase [Streptococcus suis 05HAS68]
          Length = 155

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 12/128 (9%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFSD 85
           M E M    G+GLAA QI V  R++ + + +      NP         V  NPKI+  S 
Sbjct: 12  MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSV 71

Query: 86  DFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
             +  +  EGCLS+  + +  V R A +TV YMD N +   I   G  A  +QHE+DHLN
Sbjct: 72  QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 131

Query: 143 GILFIDHL 150
           GI+F D +
Sbjct: 132 GIMFYDRI 139


>gi|259503065|ref|ZP_05745967.1| peptide deformylase [Lactobacillus antri DSM 16041]
 gi|259168931|gb|EEW53426.1| peptide deformylase [Lactobacillus antri DSM 16041]
          Length = 196

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 19/161 (11%)

Query: 11  DPILRR----VSRPIEKINSDIMNLIDNMLEVMYSTD---------GIGLAAVQIGVLYR 57
           DP+LR+    VS P+   +  +   +   LEV              G+GLAA Q+GV  +
Sbjct: 22  DPVLRKRAAKVSFPLSDEDQTLAKKMMEYLEVSQDPQLCEKYKLRAGVGLAAPQVGVSKQ 81

Query: 58  LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111
           +  + +        P    V INP I++ S  +    EG  CLS+  D    V R   IT
Sbjct: 82  MAAVLVPATEEDGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 141

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 142 LRYQDTNGEQHQVRLKNYPAIVCQHEIDHLHGMLFYDHINK 182


>gi|146319598|ref|YP_001199310.1| peptide deformylase [Streptococcus suis 05ZYH33]
 gi|146321796|ref|YP_001201507.1| peptide deformylase [Streptococcus suis 98HAH33]
 gi|253752596|ref|YP_003025737.1| polypeptide deformylase [Streptococcus suis SC84]
 gi|253754422|ref|YP_003027563.1| polypeptide deformylase [Streptococcus suis P1/7]
 gi|253756356|ref|YP_003029496.1| polypeptide deformylase [Streptococcus suis BM407]
 gi|158514139|sp|A4VXS1|DEF_STRSY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158514157|sp|A4W418|DEF_STRS2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145690404|gb|ABP90910.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33]
 gi|145692602|gb|ABP93107.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33]
 gi|251816885|emb|CAZ52534.1| polypeptide deformylase [Streptococcus suis SC84]
 gi|251818820|emb|CAZ56662.1| polypeptide deformylase [Streptococcus suis BM407]
 gi|251820668|emb|CAR47430.1| polypeptide deformylase [Streptococcus suis P1/7]
 gi|292559212|gb|ADE32213.1| Formylmethionine deformylase [Streptococcus suis GZ1]
 gi|319759011|gb|ADV70953.1| peptide deformylase [Streptococcus suis JS14]
          Length = 204

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 12/128 (9%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFSD 85
           M E M    G+GLAA QI V  R++ + + +      NP         V  NPKI+  S 
Sbjct: 61  MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVLYNPKIVAHSV 120

Query: 86  DFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
             +  +  EGCLS+  + +  V R A +TV YMD N +   I   G  A  +QHE+DHLN
Sbjct: 121 QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 180

Query: 143 GILFIDHL 150
           G++F D +
Sbjct: 181 GVMFYDRI 188


>gi|205373016|ref|ZP_03225822.1| peptide deformylase [Bacillus coahuilensis m4-4]
          Length = 184

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DY 100
           GIG+AA QI V  R++ I + +           NP +I+ S +  +    EGCLS+  D 
Sbjct: 58  GIGIAAPQIDVSKRMLAIRVPNEKGELIEEALFNPIVISHSVEQAYLTSGEGCLSVDRDV 117

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R   +TV+  D N Q + +   GL A   QHE+DHLNGI+F DH+++
Sbjct: 118 PGFVPRYRKVTVKGFDINGQLKTLKLRGLPAIVFQHEIDHLNGIMFYDHINQ 169


>gi|223933744|ref|ZP_03625717.1| peptide deformylase [Streptococcus suis 89/1591]
 gi|223897586|gb|EEF63974.1| peptide deformylase [Streptococcus suis 89/1591]
          Length = 204

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 12/128 (9%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFSD 85
           M E M    G+GLAA QI V  R++ + + +      NP         V  NPKI+  S 
Sbjct: 61  MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSV 120

Query: 86  DFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
             +  +  EGCLS+  + +  V R A +TV YMD N +   I   G  A  +QHE+DHLN
Sbjct: 121 QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 180

Query: 143 GILFIDHL 150
           G++F D +
Sbjct: 181 GVMFYDRI 188


>gi|319941618|ref|ZP_08015942.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
 gi|319804848|gb|EFW01702.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
          Length = 179

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 18/150 (12%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           +P+L + + P+    S  +  L+ +M + M++  G+G+AA Q+GV  R++    +  A  
Sbjct: 10  EPVLMKEALPVRDFGSPRLRKLVADMWDTMHAEGGVGIAAPQVGVSERIICFGFE--ASS 67

Query: 70  KNP-------MVFINPKIITF----SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + P        V INP +       +DD+    EGCLS+P  R  V R+  I  RY    
Sbjct: 68  RYPDAPAVPQTVLINPTVELLLEGTADDWEDGWEGCLSVPGMRGVVPRARRI--RYTGFG 125

Query: 119 AQHQII--YADGLLATCLQHELDHLNGILF 146
              + I   A+   A  +QHE DHL GI++
Sbjct: 126 LDGETIEREAEEFHARVVQHEFDHLKGIVY 155


>gi|168693535|ref|NP_001108286.1| peptide deformylase (mitochondrial) [Xenopus laevis]
 gi|163916521|gb|AAI57494.1| LOC100137680 protein [Xenopus laevis]
          Length = 240

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR  +  +   +    D   +++ ++ V+ +   +G++A Q+GV  R++ +   +  
Sbjct: 69  DPVLRCTAACVPSAHVSHPDTQAIVNQLVRVLSAGCCVGISAPQLGVPLRILAVAFPEQM 128

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            +  P               +FINP++   +     + EGC S+  + A V R   + + 
Sbjct: 129 CQAVPPEVRQAREMSPFPLQIFINPEMRILNSQTLSFPEGCSSVQGFSAVVPRYYAVEIS 188

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++   +H    A G  A  +QHE+DHL+G+L+ID +
Sbjct: 189 GLNPKGEHITWQAQGWAARIIQHEMDHLDGVLYIDKM 225


>gi|115378396|ref|ZP_01465558.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|115364586|gb|EAU63659.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 188

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 17/158 (10%)

Query: 11  DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL--------- 58
           +P+LR+ +R   P E  + ++  LI  M + M    G+GLAA Q+GV  RL         
Sbjct: 10  EPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRLVVVEDRAEY 69

Query: 59  -VVIDLQD-HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            V I  +D  A  + P+   V INP ++        + EGCLS+  + A V R+  + V 
Sbjct: 70  HVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALVPRARGVRVE 129

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +D +     + A G  A  LQHE DHL G L++D + 
Sbjct: 130 ALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRME 167


>gi|332525977|ref|ZP_08402118.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
 gi|332109528|gb|EGJ10451.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
          Length = 188

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 20/173 (11%)

Query: 1   MVKKPLVIFPDPI----------LRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAA 49
           MV  PL   P P+          L RV++P+E  ++  ++ L+ +M+E M +  G GLAA
Sbjct: 1   MVGLPLPRPPMPVHEILKMGDARLLRVAQPVEAFDTPALHALVADMIETMAAAHGAGLAA 60

Query: 50  VQIGVLYRLVVIDLQDHAHRKN----PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
            Q+GV  +LVV   + +         PM V  NP I   SD+     EGCLS+P  R  V
Sbjct: 61  PQVGVDLQLVVFGFERNERYPEAPAVPMTVLCNPVITPLSDETVDGWEGCLSVPGLRGVV 120

Query: 105 KRSAFITVRYMDCNAQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            R  F  +RY   +AQ + I   A+G  A  +QHE DHL G L+   ++ L +
Sbjct: 121 PR--FARIRYTGFDAQGRPIEREAEGFHARVVQHECDHLIGRLYPTRMNDLTK 171


>gi|195444657|ref|XP_002069968.1| GK11287 [Drosophila willistoni]
 gi|194166053|gb|EDW80954.1| GK11287 [Drosophila willistoni]
          Length = 241

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP+LR+ +   P E ++S +I  +++ M++V+   + +G+AA QIGV  R++ ++ +   
Sbjct: 59  DPVLRQQAALVPPEHLDSPEIKAIVEQMIKVLRKYNCVGIAAPQIGVSLRIIAMEFKKEI 118

Query: 68  HRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++ P               V INP++   S     + EGC+S+  Y  +V+R   + + 
Sbjct: 119 RKELPEFTYQARLMSELPLTVLINPELTVTSYVKLKHPEGCMSVRGYSGEVERYEAVNLN 178

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             D       I   G  A   QHE+DHL+G L+ D + R
Sbjct: 179 GHDRLGVKTQISLTGWNARIAQHEMDHLDGKLYTDRMDR 217


>gi|224283284|ref|ZP_03646606.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 136

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P +  N +      ++ + + +  G  +G+AA  IGV  R++V   QD  + +N
Sbjct: 7   LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIV--FQDKENNRN 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            ++F NP+II  SD F    EGCLS+   R    R   ITV Y   + +      DG  A
Sbjct: 65  AIMF-NPRIIAGSDPFDT-AEGCLSLDGERP-TTRYQSITVTYQARSGREYTTAFDGFTA 121

Query: 132 TCLQHELDHLNGIL 145
             +QHE+DH+NGI+
Sbjct: 122 QIIQHEIDHVNGII 135


>gi|328783477|ref|XP_623373.2| PREDICTED: hypothetical protein LOC409613 isoform 2 [Apis
           mellifera]
          Length = 328

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 14/136 (10%)

Query: 29  MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD----HAH---RK------NPMV- 74
             ++D++ E++   D +GLAA QIG+ ++L V+++ +    H H   RK      +P+  
Sbjct: 171 FQILDHLYELLKKNDTVGLAAPQIGLPWQLFVVEMTEESIEHIHPYIRKCYGITPHPLTY 230

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
           FINPK+   + +  V+ E C SI  Y A+V R   + +  ++   +   + A+G LA  +
Sbjct: 231 FINPKMNIINSEEVVHFETCASIDCYYAEVPRPKEVQIEALNKFGESFSMKAEGWLARII 290

Query: 135 QHELDHLNGILFIDHL 150
            HE+DHL G L+ D +
Sbjct: 291 HHEMDHLKGHLYTDRM 306


>gi|310287644|ref|YP_003938902.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|311064553|ref|YP_003971278.1| peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313140433|ref|ZP_07802626.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171]
 gi|309251580|gb|ADO53328.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|310866872|gb|ADP36241.1| Fms Peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313132943|gb|EFR50560.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 141

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P +  N +      ++ + + +  G  +G+AA  IGV  R++V   QD  + +N
Sbjct: 12  LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIV--FQDKENNRN 69

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            ++F NP+II  SD F    EGCLS+   R    R   ITV Y   + +      DG  A
Sbjct: 70  AIMF-NPRIIAGSDPFDT-AEGCLSLDGERP-TTRYQSITVTYQARSGREYTTAFDGFTA 126

Query: 132 TCLQHELDHLNGIL 145
             +QHE+DH+NGI+
Sbjct: 127 QIIQHEIDHVNGII 140


>gi|226948142|ref|YP_002803233.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|226841538|gb|ACO84204.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto]
          Length = 166

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M  KP+++  D  L R S  I+K N D    ++N + + +    +  G G  +AA QIG 
Sbjct: 1   MSAKPILLLGDETLYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  H      FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIHMHLGDKTH-----YFINPILEFIGEDTFPLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + + +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLDWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|260906787|ref|ZP_05915109.1| polypeptide deformylase [Brevibacterium linens BL2]
          Length = 168

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 5/162 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + ++ DP+LR    P+   +  +  L  ++++         +AA QIGV  R   
Sbjct: 1   MAERDIRLWGDPVLRSPCAPVTVFDEGLRALAQDLVDTSLPEGRAAVAAPQIGVGVRAFG 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            DL            INP+++    +    +EGCLS+P       R  F  VR +D    
Sbjct: 61  YDLDGRTG-----YVINPEVVEVGGELRDIEEGCLSVPGLFFPTPRYEFARVRGVDAENS 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
              I    + A  LQHE+ HL+G +++  L + +R    K +
Sbjct: 116 PVEISGTEVFAQMLQHEVAHLDGQVYVQTLPKERRREAMKAI 157


>gi|212639721|ref|YP_002316241.1| peptide deformylase [Anoxybacillus flavithermus WK1]
 gi|212561201|gb|ACJ34256.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1]
          Length = 184

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLS----I 97
           GIGLAA QI V  R++ + + D     +     NPKI++ S +  +    EGCLS    I
Sbjct: 58  GIGLAAPQINVSKRMIAVHVTDEKGTLHSYALFNPKIVSHSVEMCYLTSGEGCLSVDKAI 117

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           P Y   V R   ITV       +   +   GL A   QHE+DHLNGI+F DH+++
Sbjct: 118 PGY---VPRYMRITVTGTTLEDETVKLRLKGLPAIVFQHEIDHLNGIMFYDHINK 169


>gi|319793878|ref|YP_004155518.1| peptide deformylase [Variovorax paradoxus EPS]
 gi|315596341|gb|ADU37407.1| peptide deformylase [Variovorax paradoxus EPS]
          Length = 179

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 11/145 (7%)

Query: 11  DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--DLQDHA 67
           DP L R+++P+   ++D ++L + +M E M++ +G GLAA QIGV  +LV+   D+ +  
Sbjct: 11  DPRLLRIAQPVAAFDTDELHLLVRDMFETMHAVNGAGLAAPQIGVDQQLVIFGTDIVNPR 70

Query: 68  HRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +   P     V +NP I    +D     EGCLS+P  R  V R  F  +RY   +     
Sbjct: 71  YPDAPPVPRTVLLNPVITPIGEDEEEGWEGCLSVPGLRGVVPR--FANIRYTGFDPYGDP 128

Query: 124 I--YADGLLATCLQHELDHLNGILF 146
           I   A G  A  +QHE+DHL G L+
Sbjct: 129 IDRVASGFHARVVQHEVDHLLGKLY 153


>gi|56419592|ref|YP_146910.1| peptide deformylase [Geobacillus kaustophilus HTA426]
 gi|261419255|ref|YP_003252937.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297530776|ref|YP_003672051.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|319766070|ref|YP_004131571.1| peptide deformylase [Geobacillus sp. Y412MC52]
 gi|56379434|dbj|BAD75342.1| peptide deformylase2 (PDF 2) N-formylmethionylaminoacyl-tRNA
           deformylase [Geobacillus kaustophilus HTA426]
 gi|261375712|gb|ACX78455.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297254028|gb|ADI27474.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|317110936|gb|ADU93428.1| peptide deformylase [Geobacillus sp. Y412MC52]
          Length = 184

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 16/156 (10%)

Query: 12  PILRRVSRPI--------EKINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYRL 58
           P LR+++ P+        ++I   +++ +    D  L   Y    GIGLAA QI V  R+
Sbjct: 13  PTLRKIAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFITVRYM 115
           + + + D           NPKI++ S    +    EGCLS+  D    V R A ITV   
Sbjct: 73  IAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVPRYARITVTGT 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             + +   +   GL A   QHE+DHLNGI+F D ++
Sbjct: 133 TIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRIN 168


>gi|330685497|gb|EGG97150.1| peptide deformylase [Staphylococcus epidermidis VCU121]
          Length = 162

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PI  + + P+E  +  +   + ++ + +Y+ +G  L+A QIG+  ++ +
Sbjct: 1   MSVKKLVKSEHPIFNQPANPVEHFDDQLKQTLMDIEDSLYALEGSALSANQIGINQQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++     +  +  INPKI   S++     EG +S+P+   +V+R+  I V   D N  
Sbjct: 61  VDME----MEGLLQLINPKIKNQSEETITDLEGSVSLPNVFGEVERNKMIVVESNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D LNGI F +   R+
Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTEKAKRI 149


>gi|241888581|ref|ZP_04775888.1| peptide deformylase [Gemella haemolysans ATCC 10379]
 gi|241864604|gb|EER68979.1| peptide deformylase [Gemella haemolysans ATCC 10379]
          Length = 184

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 33  DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI--NPKIITFSDD--FS 88
           D   E +    GIGLAA QI V  R++ + + D    ++ + +   NPKII+ S    + 
Sbjct: 47  DEKAEKLGLKPGIGLAAPQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSATKCYL 106

Query: 89  VYQEGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
              EGCLS+  D +  V R + I V   + N +   +    L A C QHE+DHLNG++F 
Sbjct: 107 AGGEGCLSVDKDIKGYVPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFY 166

Query: 148 DHLSR 152
           DH+++
Sbjct: 167 DHINK 171


>gi|332685838|ref|YP_004455612.1| peptide deformylase [Melissococcus plutonius ATCC 35311]
 gi|332369847|dbj|BAK20803.1| peptide deformylase [Melissococcus plutonius ATCC 35311]
          Length = 187

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQIGVLYR 57
           +P LR++++ +   +  D +NL   ML            E M+   G+GLAA Q+ +  R
Sbjct: 12  NPTLRQIAKEVPVPLTEDDINLGREMLTFLKNSQDPIKAEEMHLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDLQDHAHRKNPM----VFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFI 110
           ++ + + D    ++ M    V  NPKI++ S  D      EGCLS+  +    V R   I
Sbjct: 72  IIAVHIPDLDPDQSEMLLSTVMYNPKIVSHSVQDACLSEGEGCLSVDREVSGYVVRHHKI 131

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           T+ Y D   +   +   G  A  +QHE+DH+NG+LF DH+++
Sbjct: 132 TITYFDETNEKHKLRLKGYAAIVVQHEIDHINGVLFYDHINQ 173


>gi|219130004|ref|XP_002185165.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|217403344|gb|EEC43297.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 160

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 25/161 (15%)

Query: 9   FPDPILRRVSRPIEK--INSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVVIDLQD 65
           +PDPILRR ++P++     +  +     +L     S   +GLAA Q GV  R+V +  ++
Sbjct: 4   WPDPILRRPAQPVDAHWFGTGTLQKACALLRATSVSEKAVGLAAQQCGVDARIVYLQPEE 63

Query: 66  HAHRKNPMV---------------FINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107
               ++P++                INP+I+  S +  V  ++E CL +P  + A V R 
Sbjct: 64  ----RHPLINRRSFQRTAELSEITMINPQIVERSPELDVHSWREHCLVLPPTFDATVLRD 119

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           +++T+ + D + +   +   G +A  +QHELDH  GIL  D
Sbjct: 120 SWVTIVFRDIHGRPHSVRLRGEMARAVQHELDHDRGILITD 160


>gi|319649756|ref|ZP_08003909.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
 gi|317398510|gb|EFV79195.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
          Length = 183

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 10/115 (8%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----I 97
           GIGLAA QI V  R++ + +  +    +  +F NPKII+ S   S     EGCLS    I
Sbjct: 58  GIGLAAPQINVSRRMIAVHVTYNQDLYSYALF-NPKIISHSVQLSYLAEGEGCLSVDESI 116

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           P +   V R A +TV+  D       +   GL A   QHE+DHLNGI+F DH+++
Sbjct: 117 PGF---VPRYAKVTVKGTDLQGNEVKLKLKGLPAIVFQHEIDHLNGIMFYDHINK 168


>gi|58580698|ref|YP_199714.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425292|gb|AAW74329.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 212

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68
           D  L RV+  +  + S ++  L+ +M E M +  G+GLAA QI V  +L+V   +    +
Sbjct: 51  DKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERY 110

Query: 69  RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P V      N +I   SD+     EGCLSIP  RA + R  +I  R    +      
Sbjct: 111 PEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIER 170

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 171 EAEGFHARVVQHEYDHLVGRLY 192


>gi|307329049|ref|ZP_07608216.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
 gi|306885244|gb|EFN16263.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
          Length = 500

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 13/145 (8%)

Query: 11  DPILRRVSRPI---------EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           DPIL + +RP           ++ +++++  +    V     G+G+AA QIG+     ++
Sbjct: 332 DPILTKTARPFALPDEAEDARRVVAELISAAERAATVHVFGKGMGVAAPQIGIDRAAAIV 391

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              +       +  +NP+I+  S +     EGCLS  D R  V R   I+V + D + Q 
Sbjct: 392 RTPE----GETLTLLNPRIVEESPEADEQYEGCLSFFDVRGKVPRPLAISVEHQDIDGQQ 447

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           +I   +  +A  + HE+DHL+G+L+
Sbjct: 448 RITIFERGMARLVAHEVDHLHGLLY 472


>gi|6225247|sp|O31410|DEF2_BACST RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|22219287|pdb|1LQY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Peptide
           Deformylase Complexed With Antibiotic Actinonin
 gi|2266414|emb|CAA71581.1| N-formylmethionylaminoacyl-tRNA deformylase [Geobacillus
           stearothermophilus]
          Length = 184

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 22/159 (13%)

Query: 12  PILRRVSRPI--------EKINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYRL 58
           P LR+V+ P+        ++I   +++ +    D  L   Y    GIGLAA QI V  R+
Sbjct: 13  PTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITV 112
           + + + D           NPKI++ S    +    EGCLS+    P Y   V R A ITV
Sbjct: 73  IAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGY---VLRYARITV 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                + +   +   GL A   QHE+DHLNGI+F D ++
Sbjct: 130 TGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRIN 168


>gi|120611762|ref|YP_971440.1| peptide deformylase [Acidovorax citrulli AAC00-1]
 gi|120590226|gb|ABM33666.1| peptide deformylase [Acidovorax citrulli AAC00-1]
          Length = 200

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 7/140 (5%)

Query: 14  LRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-- 70
           L R +RP+ +  +  ++ L+ +M + M + +G GLAA QIGV  ++V+   ++   R   
Sbjct: 35  LLRTARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVVIFGSEERNPRYPD 94

Query: 71  ----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                P V +NP+I     +     EGCLS+P  R  V R + I  R  D +        
Sbjct: 95  RPLVPPTVLVNPRITPLGGEEEEDWEGCLSVPGLRGVVPRWSRIHYRGFDEHGAPIDRTV 154

Query: 127 DGLLATCLQHELDHLNGILF 146
           +G  A  +QHE DHL G L+
Sbjct: 155 EGFHARVVQHECDHLVGKLY 174


>gi|260221950|emb|CBA31026.1| hypothetical protein Csp_C26490 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 397

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +PD  L  V++P+ +++  I  L  +MLE MY   GIGLAA QI V  R++VID+ 
Sbjct: 33  PILCYPDTRLHTVAKPVSQVDDRIRTLTADMLETMYDAKGIGLAATQIDVHERVIVIDVS 92

Query: 65  DHAHRKNPMVFINPKII 81
           +   R  PMV INP+++
Sbjct: 93  E--DRDQPMVLINPELV 107


>gi|219855695|ref|YP_002472817.1| hypothetical protein CKR_2352 [Clostridium kluyveri NBRC 12016]
 gi|219569419|dbj|BAH07403.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 180

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 12/137 (8%)

Query: 26  SDIMNLIDNMLEVMYST-----DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80
           + +MN + N  + + S       G+GL+A QIG+  R+ V+   D   +++    INPKI
Sbjct: 32  TSMMNFLKNSQDSILSKKYKLRGGVGLSANQIGLNKRMFVVYFTDEKGKEHEYTLINPKI 91

Query: 81  ITFSDDFSVY---QEGCLSIPDYRAD--VKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           I+ S    +Y    EGCLS+ D   D  V R   I V+  +   +  I+  +G  +  +Q
Sbjct: 92  ISHSVSM-IYLPPSEGCLSV-DRVIDGFVPRYERIKVKGFNLEGEEIILKLNGYSSIVIQ 149

Query: 136 HELDHLNGILFIDHLSR 152
           HE+DHLNGI+F + +++
Sbjct: 150 HEIDHLNGIMFYERINK 166


>gi|73663007|ref|YP_301788.1| peptide deformylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495522|dbj|BAE18843.1| formylmethionine deformylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 183

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 5/128 (3%)

Query: 28  IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS- 84
           ++N  D+ +   Y    G+GLAA QI +  +++ + L D  + K+  ++ +NPKI++ S 
Sbjct: 41  LINSQDDEIATKYGLRSGVGLAAPQINISKKMIAVYLPDDGNGKSYDLMLVNPKIMSHSI 100

Query: 85  -DDFSVYQEGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            + +    EGCLS+  +    V R   ITV+  D + +   +   G  A  +QHE+DH+N
Sbjct: 101 QEAYLPTGEGCLSVDENIPGLVHRKNRITVKATDIDGKEVKLRLKGYPAVVVQHEIDHIN 160

Query: 143 GILFIDHL 150
           GI+F DH+
Sbjct: 161 GIMFYDHI 168


>gi|328675640|gb|AEB28315.1| Peptide deformylase [Francisella cf. novicida 3523]
          Length = 204

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 20/152 (13%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+ +I S +I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 16  NQVLYQKCKPVSEIKSVEIQNIITEMYEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 73

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           + P         VFINPKI   S     +  GCLS        KR    T + ++  A +
Sbjct: 74  RYPFDFGSVPYQVFINPKITKASKQRVSFWHGCLSA----LGEKRGKLATYKEIEYEAYN 129

Query: 122 Q-----IIYADGLLATCLQHELDHLNGILFID 148
           Q     I   D + A   QHE +HL G +++D
Sbjct: 130 QHGEKIIGKLDSIAAVIFQHEFNHLLGSVYVD 161


>gi|254495945|ref|ZP_05108853.1| peptide deformylase [Legionella drancourtii LLAP12]
 gi|254354823|gb|EET13450.1| peptide deformylase [Legionella drancourtii LLAP12]
          Length = 179

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 72/148 (48%), Gaps = 14/148 (9%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +P+V F DP +R  S P      ++  LI NM + M +  G+G+AA QIG   R+++   
Sbjct: 19  EPVVDF-DPAIR--SYP------ELTELIQNMKDTMDAKGGVGIAAPQIGYNKRVIMFGF 69

Query: 64  QDHAHRKN--PMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +    N  P+ F   INP     SD+     EGCLS+P  R  V R   I     D  
Sbjct: 70  EKNKRYPNEKPVPFTILINPIYQIMSDELVEEWEGCLSVPGLRGLVPRYKKIEYSGYDPE 129

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +     A    A  +QHE DHL+G+LF
Sbjct: 130 GKLITRVAADFHARIIQHECDHLDGVLF 157


>gi|21244235|ref|NP_643817.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
 gi|25452915|sp|Q8PGV2|DEF1_XANAC RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|21109877|gb|AAM38353.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 171

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 8/143 (5%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V    D + R
Sbjct: 10  DKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASER 68

Query: 70  --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             + P V      N +I   S+D     EGCLSIP  RA + R  FI  R    +     
Sbjct: 69  YPEAPAVPRTALANAQIEPLSEDMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGSPIE 128

Query: 124 IYADGLLATCLQHELDHLNGILF 146
             A+G  A  +QHE D+L G L+
Sbjct: 129 RDAEGFHARVVQHEYDNLVGRLY 151


>gi|296130447|ref|YP_003637697.1| Peptide deformylase [Cellulomonas flavigena DSM 20109]
 gi|296022262|gb|ADG75498.1| Peptide deformylase [Cellulomonas flavigena DSM 20109]
          Length = 230

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 12/157 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNML--EVMYSTDGIGLAAVQIGVLYRLVVI 61
            P+V    P+LR ++RP +    D        L    M +  G+GLAA QIG+   L V+
Sbjct: 28  APIVQAGHPVLRAMARPYDGQVDDAELTELLALLHRTMRAAPGVGLAAPQIGLPLALAVV 87

Query: 62  ------DLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
                 D +    R+ P+    V +NP      D+   + EGCLS+  Y+A V R   + 
Sbjct: 88  EDPGTGDGEAARVRERPVLPYRVLVNPTYAPAGDELVAFYEGCLSVEGYQAVVPRQRAVH 147

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           +  +D           G  A  +QHE DHL+G L++D
Sbjct: 148 LTGLDETGATLDEVVTGWPARIVQHETDHLHGTLYLD 184


>gi|148543862|ref|YP_001271232.1| peptide deformylase [Lactobacillus reuteri DSM 20016]
 gi|184153262|ref|YP_001841603.1| peptide deformylase [Lactobacillus reuteri JCM 1112]
 gi|227364768|ref|ZP_03848817.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|325682605|ref|ZP_08162122.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
 gi|167012064|sp|A5VJ71|DEF_LACRD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229487489|sp|B2G6P1|DEF_LACRJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148530896|gb|ABQ82895.1| peptide deformylase [Lactobacillus reuteri DSM 20016]
 gi|183224606|dbj|BAG25123.1| N-formylmethionyl-tRNA deformylase [Lactobacillus reuteri JCM 1112]
 gi|227070227|gb|EEI08601.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|324978444|gb|EGC15394.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
          Length = 186

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 19/161 (11%)

Query: 11  DPILRR----VSRPI----EKINSDIMNLID-----NMLEVMYSTDGIGLAAVQIGVLYR 57
           +P+LR+    VS P+    +K+  D+M  ++      + +      G+GLAA Q+GV  +
Sbjct: 12  NPVLRKRAAKVSFPLSDEDQKLAKDMMKYLEVSQDPELCKKYKLRAGVGLAAPQVGVSKQ 71

Query: 58  LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFIT 111
           +  + +      + P+   V INP I++ S  +    EG  CLS+  D    V R   IT
Sbjct: 72  MAAVLVPAPDEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRIT 131

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 132 LRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172


>gi|153955271|ref|YP_001396036.1| Def2 [Clostridium kluyveri DSM 555]
 gi|146348129|gb|EDK34665.1| Def2 [Clostridium kluyveri DSM 555]
          Length = 191

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 12/137 (8%)

Query: 26  SDIMNLIDNMLEVMYST-----DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80
           + +MN + N  + + S       G+GL+A QIG+  R+ V+   D   +++    INPKI
Sbjct: 43  TSMMNFLKNSQDSILSKKYKLRGGVGLSANQIGLNKRMFVVYFTDEKGKEHEYTLINPKI 102

Query: 81  ITFSDDFSVY---QEGCLSIPDYRAD--VKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           I+ S    +Y    EGCLS+ D   D  V R   I V+  +   +  I+  +G  +  +Q
Sbjct: 103 ISHSVSM-IYLPPSEGCLSV-DRVIDGFVPRYERIKVKGFNLEGEEIILKLNGYSSIVIQ 160

Query: 136 HELDHLNGILFIDHLSR 152
           HE+DHLNGI+F + +++
Sbjct: 161 HEIDHLNGIMFYERINK 177


>gi|313201227|ref|YP_004039885.1| peptide deformylase [Methylovorus sp. MP688]
 gi|312440543|gb|ADQ84649.1| peptide deformylase [Methylovorus sp. MP688]
          Length = 169

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 20/149 (13%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP+L + + P+   ++ ++  LI +M + M   +G G+AA QIGV  R+V+  +      
Sbjct: 3   DPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVVIFGVG----- 57

Query: 70  KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           KNP           V +NP +   +DD     EGCLS+P  R  V R  ++ + Y   + 
Sbjct: 58  KNPRYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPR--YVRLHYTGFDQ 115

Query: 120 QHQII--YADGLLATCLQHELDHLNGILF 146
               I     G  A  +QHE DHL+GIL+
Sbjct: 116 YGNPIDRLVSGFHARVVQHECDHLDGILY 144


>gi|315658596|ref|ZP_07911467.1| peptide deformylase [Staphylococcus lugdunensis M23590]
 gi|315496385|gb|EFU84709.1| peptide deformylase [Staphylococcus lugdunensis M23590]
          Length = 183

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITFSDDFSV--YQEGCLSIPDY 100
           G+GLAA QI +  +++ + L D  + R   ++ +NPK+I++S  ++     EGCLS+   
Sbjct: 58  GVGLAAPQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVISYSVQYAYLPTGEGCLSVDKN 117

Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            A  V R   +TV+  D + +   +   G  A  +QHE+DHLNGI+F DH+
Sbjct: 118 IAGLVHRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHI 168


>gi|148972164|ref|ZP_01811404.1| peptide deformylase [Leptolyngbya valderiana BDU 20041]
 gi|148872760|gb|EDL71126.1| peptide deformylase [Leptolyngbya valderiana BDU 20041]
          Length = 118

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%)

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           HA    P   +NP+I+  SDD  +  EGCLS+P  R  V R   I V Y+D + + Q   
Sbjct: 12  HAPMLEPTAMVNPRILHCSDDRVLGWEGCLSVPGRRGWVPRYREIEVEYLDRSGRLQRRV 71

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
               +A   QHE DHLNG++F+D + +
Sbjct: 72  LKDFVARIFQHEFDHLNGLVFLDRVEK 98


>gi|84622632|ref|YP_450004.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188578324|ref|YP_001915253.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|242556373|pdb|3DLD|A Chain A, Crystal Structure Of Peptide Deformylase, Xoo1075, From
           Xanthomonas Oryzae Pv. Oryzae Kacc10331
 gi|84366572|dbj|BAE67730.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522776|gb|ACD60721.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 171

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68
           D  L RV+  +  + S ++  L+ +M E M +  G+GLAA QI V  +L+V   +    +
Sbjct: 10  DKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERY 69

Query: 69  RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P V      N +I   SD+     EGCLSIP  RA + R  +I  R    +      
Sbjct: 70  PEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIER 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 EAEGFHARVVQHEYDHLVGRLY 151


>gi|256846996|ref|ZP_05552442.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715660|gb|EEU30635.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 186

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 25/164 (15%)

Query: 11  DPILR----RVSRPIEKINSDIMNLIDNMLEVMYSTD---------GIGLAAVQIGVLYR 57
           DP+LR    +VS P+     +  + +   LEV    +         G+GLAA Q+GV  +
Sbjct: 12  DPVLRQRAAKVSFPLTDDEREFAHQLMEYLEVSQDPELCKKYGLRAGVGLAAPQVGVSKQ 71

Query: 58  LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLS----IPDYRADVKRSA 108
           +  + +        P    V INP II+ S  + V  EG  CLS    IP Y   V R  
Sbjct: 72  MASVLVPADEEGGKPQFKDVIINPVIISESVQYGVLTEGEGCLSVDKDIPGY---VPRHD 128

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            IT++Y D + +   I      A   QHE+DHL+G+LF DH+++
Sbjct: 129 RITLKYQDVDGETHQIRLKHYPAIVCQHEIDHLHGVLFYDHINK 172


>gi|206560457|ref|YP_002231221.1| peptide deformylase [Burkholderia cenocepacia J2315]
 gi|198036498|emb|CAR52395.1| putative deformylase [Burkholderia cenocepacia J2315]
          Length = 177

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L  V++P+E+ ++ ++  ++ +M E M+  +G GLAA QIG+  ++++    ++   
Sbjct: 10  DPRLLEVAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGNNNRY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INPKI     D     EGCLS+P  R  V R A +     D   Q    
Sbjct: 70  PDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGQKIDR 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+G  A  +QHE DHL G L+   ++   R   T+
Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165


>gi|16803091|ref|NP_464576.1| peptide deformylase [Listeria monocytogenes EGD-e]
 gi|47096139|ref|ZP_00233739.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854]
 gi|224500304|ref|ZP_03668653.1| peptide deformylase [Listeria monocytogenes Finland 1988]
 gi|224502635|ref|ZP_03670942.1| peptide deformylase [Listeria monocytogenes FSL R2-561]
 gi|254828428|ref|ZP_05233115.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165]
 gi|254830180|ref|ZP_05234835.1| peptide deformylase [Listeria monocytogenes 10403S]
 gi|254898776|ref|ZP_05258700.1| peptide deformylase [Listeria monocytogenes J0161]
 gi|254911735|ref|ZP_05261747.1| peptide deformylase [Listeria monocytogenes J2818]
 gi|254936061|ref|ZP_05267758.1| polypeptide deformylase [Listeria monocytogenes F6900]
 gi|284801383|ref|YP_003413248.1| peptide deformylase [Listeria monocytogenes 08-5578]
 gi|284994525|ref|YP_003416293.1| peptide deformylase [Listeria monocytogenes 08-5923]
 gi|23396542|sp|Q8Y866|DEF_LISMO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|16410453|emb|CAC99129.1| lmo1051 [Listeria monocytogenes EGD-e]
 gi|47015488|gb|EAL06421.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854]
 gi|258600823|gb|EEW14148.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165]
 gi|258608650|gb|EEW21258.1| polypeptide deformylase [Listeria monocytogenes F6900]
 gi|284056945|gb|ADB67886.1| peptide deformylase [Listeria monocytogenes 08-5578]
 gi|284059992|gb|ADB70931.1| peptide deformylase [Listeria monocytogenes 08-5923]
 gi|293589685|gb|EFF98019.1| peptide deformylase [Listeria monocytogenes J2818]
          Length = 183

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 22/160 (13%)

Query: 12  PILRRVSRPI--------EKINSDIMNLI-----DNMLEVMYSTDGIGLAAVQIGVLYRL 58
           P LR V+  +        +K+  D++  +     +++ E      G+G+AA Q+ V  R 
Sbjct: 13  PALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRF 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112
           + I + D   R    V  NPKI + S   +     EGCLS+    P Y   V RS  +T+
Sbjct: 73  LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              D N     +   G  A  +QHE+DHLNGI+F DH+++
Sbjct: 130 DAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINK 169


>gi|229544091|ref|ZP_04433150.1| peptide deformylase [Bacillus coagulans 36D1]
 gi|229325230|gb|EEN90906.1| peptide deformylase [Bacillus coagulans 36D1]
          Length = 193

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYR 101
           G+GL+A QIG+  R+  + + D    K   VF NPK+++ S    +    EGCLS+ D +
Sbjct: 66  GVGLSANQIGLNKRMFAVYIADEDGEKAYTVF-NPKLVSHSISMIYLPQGEGCLSV-DRK 123

Query: 102 AD--VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            D  V R   I V+  D +    +I   G  A   QHE+DHLNGI+F DH+++
Sbjct: 124 VDGFVPRYERIKVKAYDLDGNEVLIKLKGYPAIVFQHEMDHLNGIMFYDHINK 176


>gi|253996543|ref|YP_003048607.1| peptide deformylase [Methylotenera mobilis JLW8]
 gi|253983222|gb|ACT48080.1| peptide deformylase [Methylotenera mobilis JLW8]
          Length = 181

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           +P L   + P+ + N+ ++  LI ++ + M   +G G+AA QIGV  R+V+   ++ A  
Sbjct: 11  EPCLLAKAEPVAQFNTAELHQLIQDLEDTMQHMNGAGIAAPQIGVSLRVVIFGQKEPA-A 69

Query: 70  KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            NP           V INPK+    D      EGCLS+P  R  V R   +     D   
Sbjct: 70  VNPRYPDADAVPYTVLINPKLTLIGDKIENDWEGCLSVPGMRGIVPRHLKLHYTGFDQYG 129

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                   G  A  +QHE DHL+G+L+   +  LK
Sbjct: 130 NKVDRLVSGFHARVVQHECDHLDGVLYPMRIRDLK 164


>gi|144574929|gb|AAZ43441.2| putative polypeptide deformylase [Mycoplasma synoviae 53]
          Length = 189

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 25/168 (14%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------EVMYST--DGIGLAAVQIGVLY 56
           +V  PD ILR  S+ +E  ++ + + L + M+      +  +ST   G+G+AA+Q G+  
Sbjct: 12  IVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQK 71

Query: 57  RLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSV---YQEGCLSIPD----YRADVK 105
            +  + L       N +VF     NP I+TF         + EGCLS+PD        V 
Sbjct: 72  NVFYVKL---TQNDNSVVFDDVLFNP-IVTFKGKILTALAHGEGCLSVPDEIPNQEGLVS 127

Query: 106 RSAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           RS  I V+ Y     +H   +  G LA   QHELDHLNG LFID +++
Sbjct: 128 RSYEIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 175


>gi|71894044|ref|YP_278152.1| putative polypeptide deformylase [Mycoplasma synoviae 53]
          Length = 186

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 25/168 (14%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------EVMYST--DGIGLAAVQIGVLY 56
           +V  PD ILR  S+ +E  ++ + + L + M+      +  +ST   G+G+AA+Q G+  
Sbjct: 9   IVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQK 68

Query: 57  RLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSV---YQEGCLSIPD----YRADVK 105
            +  + L       N +VF     NP I+TF         + EGCLS+PD        V 
Sbjct: 69  NVFYVKL---TQNDNSVVFDDVLFNP-IVTFKGKILTALAHGEGCLSVPDEIPNQEGLVS 124

Query: 106 RSAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           RS  I V+ Y     +H   +  G LA   QHELDHLNG LFID +++
Sbjct: 125 RSYEIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 172


>gi|308173421|ref|YP_003920126.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7]
 gi|307606285|emb|CBI42656.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7]
 gi|328553649|gb|AEB24141.1| peptide deformylase [Bacillus amyloliquefaciens TA208]
 gi|328911506|gb|AEB63102.1| formylmethionine deformylase A [Bacillus amyloliquefaciens LL3]
          Length = 184

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----I 97
           G+GLAA Q  V  R++ +  +D           NPKI++ S + S     EGCLS    I
Sbjct: 58  GVGLAAPQTAVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPI 117

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           P Y   V R A I V+      +   I   G  A   QHE+DHLNG++F DH+ +
Sbjct: 118 PGY---VPRYARIRVKATTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDK 169


>gi|126650157|ref|ZP_01722390.1| peptide deformylase [Bacillus sp. B14905]
 gi|126593329|gb|EAZ87291.1| peptide deformylase [Bacillus sp. B14905]
          Length = 192

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 4/112 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DY 100
           G GL+A QIGV  R+  +  ++H  +K+ M+FINPK+++ S +  +    EGCLS+    
Sbjct: 66  GSGLSANQIGVDKRMFAVLFENHD-QKHEMMFINPKVMSHSFNMIYLPEGEGCLSVNRPV 124

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R   I V+  + + Q  I+   G  +  +QHE+DHLNGI+F D +++
Sbjct: 125 HGFVPRYERIKVKAYNIDGQEFIMSLKGYESIVVQHEIDHLNGIMFYDRINK 176


>gi|46907283|ref|YP_013672.1| peptide deformylase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092943|ref|ZP_00230724.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858]
 gi|226223669|ref|YP_002757776.1| formylmethionine deformylase [Listeria monocytogenes Clip81459]
 gi|254823676|ref|ZP_05228677.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194]
 gi|254853062|ref|ZP_05242410.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503]
 gi|254933401|ref|ZP_05266760.1| polypeptide deformylase [Listeria monocytogenes HPB2262]
 gi|254992568|ref|ZP_05274758.1| peptide deformylase [Listeria monocytogenes FSL J2-064]
 gi|255522443|ref|ZP_05389680.1| peptide deformylase [Listeria monocytogenes FSL J1-175]
 gi|300765902|ref|ZP_07075875.1| peptide deformylase [Listeria monocytogenes FSL N1-017]
 gi|67460118|sp|Q721B5|DEF_LISMF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|259645183|sp|C1L1X2|DEF_LISMC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|46880550|gb|AAT03849.1| peptide deformylase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018690|gb|EAL09442.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858]
 gi|225876131|emb|CAS04837.1| Putative formylmethionine deformylase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606409|gb|EEW19017.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503]
 gi|293584962|gb|EFF96994.1| polypeptide deformylase [Listeria monocytogenes HPB2262]
 gi|293592898|gb|EFG00659.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194]
 gi|300513364|gb|EFK40438.1| peptide deformylase [Listeria monocytogenes FSL N1-017]
 gi|328466823|gb|EGF37937.1| peptide deformylase [Listeria monocytogenes 1816]
 gi|332311460|gb|EGJ24555.1| Peptide deformylase 1 [Listeria monocytogenes str. Scott A]
          Length = 183

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 10/132 (7%)

Query: 28  IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           ++N  D  L   Y    G+G+AA Q+ V  R + I + D   R    V  NPKI + S  
Sbjct: 41  LINSQDEELAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQ 100

Query: 87  FSVYQ--EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
            +     EGCLS+    P Y   V RS  +T+   D N     +   G  A  +QHE+DH
Sbjct: 101 QACLSGGEGCLSVDREVPGY---VVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDH 157

Query: 141 LNGILFIDHLSR 152
           LNGI+F DH+++
Sbjct: 158 LNGIMFYDHINK 169


>gi|289671064|ref|ZP_06492139.1| peptide deformylase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 171

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V    D + R
Sbjct: 10  DKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASER 68

Query: 70  --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             + P V      N +I   S++     EGCLSIP  RA + R  +I  R +  +     
Sbjct: 69  YPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGVAPDDSPIA 128

Query: 124 IYADGLLATCLQHELDHLNGILF 146
             A+G  A  +QHE DHL G L+
Sbjct: 129 REAEGFHARVVQHEYDHLVGRLY 151


>gi|270284117|ref|ZP_05965571.2| peptide deformylase [Bifidobacterium gallicum DSM 20093]
 gi|270277126|gb|EFA22980.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
          Length = 221

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 15/157 (9%)

Query: 5   PLVIFPDPILRRVSRP-IEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  + P + ++++  +  LI+ M   M    G+G+AA QIG+     V+ 
Sbjct: 33  PMVEVGDPVLRAQAEPYVGQLSAKTLAKLIEAMRVTMLDAPGVGVAAPQIGLSLAFAVV- 91

Query: 63  LQDHAHRK---NPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            +DH   +   +P  F        INP      D  + + EGCLS P ++A  +R   I 
Sbjct: 92  -EDHTSEEYDDDPREFAEFPFHVIINPSYDPVGDKTAKFFEGCLSFPGFQAVRERYVDIM 150

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             + D           G  A   QHE DHL+G ++ID
Sbjct: 151 AHWTDEQGVRHDEPLHGWPARIFQHETDHLSGEIYID 187


>gi|325918418|ref|ZP_08180546.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325535380|gb|EGD07248.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 176

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68
           D  L RV+ P+  + S ++  L+ +M E M    G+GLAA QI V  +L+V   +    +
Sbjct: 15  DKRLLRVAPPVTNLGSAELQALVADMFETMDDARGVGLAAPQIAVDLQLMVFGFEVSERY 74

Query: 69  RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              P V      N +I   SD+     EGCLSIP  RA + R   I  R    +      
Sbjct: 75  PDAPTVPRTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRHIRYRGFAPDGSPIER 134

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 135 EAEGFHARVVQHEYDHLVGRLY 156


>gi|89097400|ref|ZP_01170289.1| peptide deformylase [Bacillus sp. NRRL B-14911]
 gi|89087696|gb|EAR66808.1| peptide deformylase [Bacillus sp. NRRL B-14911]
          Length = 192

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 18/166 (10%)

Query: 4   KPLVIFPDPILRR----VSRPIEKINSDIMNLIDNML------EVMYSTD---GIGLAAV 50
           K +V   DPILR+    V+ P+ + +  IM ++   L      E+ Y      G+GL+A 
Sbjct: 12  KDIVREGDPILRQKTAEVAVPLNQEDHVIMEMMMEYLKNSQDPELAYKYQLRPGVGLSAN 71

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY---QEGCLSIP-DYRADVKR 106
           QIG   R+     +D       +   NPKII+ S    VY    EGCLS+  + +  V R
Sbjct: 72  QIGEDKRMFAAFFRDEKGEVKELRVFNPKIISHSAAM-VYLPEGEGCLSVDREVKGYVPR 130

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I ++Y D   +   +   G+ +  +QHE+DHLNGI+F D +++
Sbjct: 131 YERIKIKYSDEKGEQVEMRLKGIASVIVQHEIDHLNGIMFYDRINK 176


>gi|239815924|ref|YP_002944834.1| peptide deformylase [Variovorax paradoxus S110]
 gi|239802501|gb|ACS19568.1| peptide deformylase [Variovorax paradoxus S110]
          Length = 179

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 11/145 (7%)

Query: 11  DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--DLQDHA 67
           DP L R+++P+   ++D ++L + +M E M + +G GLAA QIGV  +LV+   D+ +  
Sbjct: 11  DPRLLRIAQPVAAFDTDELHLLVRDMFETMLAVNGAGLAAPQIGVDQQLVIFGTDVVNPR 70

Query: 68  HRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +   P     V +NP I    D+     EGCLS+P  R  V R  F  +RY   +     
Sbjct: 71  YPDAPPVPRTVLLNPVITPIGDEEEEGWEGCLSVPGLRGVVPR--FANIRYTGFDPYGDP 128

Query: 124 I--YADGLLATCLQHELDHLNGILF 146
           I   A G  A  +QHE+DHL G L+
Sbjct: 129 IDRVASGFHARVVQHEVDHLLGKLY 153


>gi|289663684|ref|ZP_06485265.1| peptide deformylase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 171

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 8/143 (5%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V    D + R
Sbjct: 10  DKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASER 68

Query: 70  --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
             + P V      N +I   S +     EGCLSIP  RA + R  +I  R +  +     
Sbjct: 69  YPEAPAVPRTALANAQIEPLSGEMENGWEGCLSIPGLRAVIPRYRYIRYRGVAPDGSPIE 128

Query: 124 IYADGLLATCLQHELDHLNGILF 146
             A+G  A  +QHE DHL G L+
Sbjct: 129 REAEGFHARVVQHEYDHLVGRLY 151


>gi|260834959|ref|XP_002612477.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae]
 gi|229297854|gb|EEN68486.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae]
          Length = 188

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 17/155 (10%)

Query: 11  DPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61
           +PILR  +  ++  N    +   +++ +++VM     +GL+A Q+GV  +++ +      
Sbjct: 17  NPILRGQALAVDHRNIKSKETQEVLEQLVKVMRKKGAVGLSAPQVGVGLQIIAVECTRKQ 76

Query: 62  -DLQDHAHRK------NPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            DL     RK       P+ +FINPK+        V+ EGC S+P ++A+V R   + + 
Sbjct: 77  LDLVPQEIRKIREMQEFPLKIFINPKLKVTDYSTVVFPEGCESLPGFQANVPRYYGVNIT 136

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            +D           G  A  LQHE++HL G L+ID
Sbjct: 137 GLDREGMPVAWQVTGWPARILQHEVEHLRGDLYID 171


>gi|169827255|ref|YP_001697413.1| peptide deformylase [Lysinibacillus sphaericus C3-41]
 gi|168991743|gb|ACA39283.1| Peptide deformylase [Lysinibacillus sphaericus C3-41]
          Length = 192

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 4/112 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DY 100
           G GL+A QIGV  R+  +  +DH  +K  M+FINPK+++ S +  +    EGCLS+    
Sbjct: 66  GSGLSANQIGVDKRMFAVLFEDHD-QKPEMMFINPKVMSHSLNMIYLPEGEGCLSVNRPV 124

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R   I V+    + Q  I+   G  +  +QHE+DHLNGI+F D +++
Sbjct: 125 HGFVPRYERIKVKAYTIDGQEFILSLKGYESIVVQHEIDHLNGIMFYDRINK 176


>gi|21230162|ref|NP_636079.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769848|ref|YP_244610.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188993065|ref|YP_001905075.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|25452914|sp|Q8PCN7|DEF1_XANCP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|21111696|gb|AAM40003.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575180|gb|AAY50590.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734825|emb|CAP53035.1| Peptide deformylase [Xanthomonas campestris pv. campestris]
          Length = 171

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68
           D  L RV+ P+  + SD ++ L+ +M E M +  G+GLAA QI V  +L+V   +    +
Sbjct: 10  DKRLLRVAPPVTNLGSDELHALVADMFETMDAARGVGLAAPQIAVDLQLMVFGFEASERY 69

Query: 69  RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P V      N +I   SD+     EGCLSIP  RA + R   I       +      
Sbjct: 70  PEAPAVPRTALANVQIEPLSDEMENGWEGCLSIPGLRAVIPRHRVIRYSGFAPDGTPIER 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 EAEGFHARVVQHEYDHLVGRLY 151


>gi|319650481|ref|ZP_08004621.1| Def2 protein [Bacillus sp. 2_A_57_CT2]
 gi|317397662|gb|EFV78360.1| Def2 protein [Bacillus sp. 2_A_57_CT2]
          Length = 192

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 16/157 (10%)

Query: 11  DPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTD-----------GIGLAAVQIGVLYR 57
           DPILR V++ +       D   LI  M  +  S D           GIGL+A QIG+  R
Sbjct: 20  DPILREVTKEVTVPLTEEDRGTLIAMMQYLKNSQDPAIAKKYGLRPGIGLSANQIGLNKR 79

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSAFITVRY 114
           +      +          INPKII+ S    F    EGCLS+  D +  V R   I V+ 
Sbjct: 80  MFTAYFTNEKAEPQEYFVINPKIISHSVGVIFLPEGEGCLSVDRDVKGYVPRYERIKVKA 139

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +   +   +   G+ A  +QHE+DHLNGI+F D ++
Sbjct: 140 HNLEGEEVTLRFKGIPAIIMQHEIDHLNGIMFYDRIN 176


>gi|157692133|ref|YP_001486595.1| peptide deformylase [Bacillus pumilus SAFR-032]
 gi|157680891|gb|ABV62035.1| peptide deformylase [Bacillus pumilus SAFR-032]
          Length = 185

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 22/160 (13%)

Query: 12  PILRRVSR-----PIEKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYRL 58
           P+LR+ +      P E+    + ++I+         M E      G+GLAA QI +  R+
Sbjct: 13  PVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDAEMAEKFGLRPGVGLAAPQINISKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS----IPDYRADVKRSAFITV 112
           + +  +D    +      NP+I++ S    +    EGCLS    IP +   V R   I V
Sbjct: 73  IAVHCEDEDGEEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGF---VPRYQKIRV 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +      +   I   G  A   QHE+DHLNGI+F DH+ +
Sbjct: 130 KATTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169


>gi|254373927|ref|ZP_04989409.1| polypeptide deformylase [Francisella novicida GA99-3548]
 gi|151571647|gb|EDN37301.1| polypeptide deformylase [Francisella novicida GA99-3548]
          Length = 210

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 16/150 (10%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I S +I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 22  NKVLYQKCKPVADIQSAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS + + R   K + +  + Y   N  
Sbjct: 80  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 137

Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148
            + I A  D + A   QHE +HL G +++D
Sbjct: 138 GEKITAKLDSIAAVIFQHEFNHLLGSVYVD 167


>gi|16800112|ref|NP_470380.1| peptide deformylase [Listeria innocua Clip11262]
 gi|23396547|sp|Q92CX8|DEF_LISIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|16413502|emb|CAC96274.1| lin1043 [Listeria innocua Clip11262]
 gi|313619530|gb|EFR91206.1| peptide deformylase [Listeria innocua FSL S4-378]
 gi|313624273|gb|EFR94321.1| peptide deformylase [Listeria innocua FSL J1-023]
          Length = 183

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 22/160 (13%)

Query: 12  PILRRVSRPI--------EKINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYRL 58
           P LR V+  +        +K+  D++  +    D  L   Y    G+G+AA Q+ V  R 
Sbjct: 13  PALREVATEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQLAVTKRF 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112
           + I + D   R    V  NPKI + S   +     EGCLS+    P Y   V RS  +T+
Sbjct: 73  LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              D N     +   G  A  +QHE+DHLNG++F DH+++
Sbjct: 130 DAFDENGTPLKLRFKGYPAIVVQHEIDHLNGVMFYDHINK 169


>gi|322392329|ref|ZP_08065790.1| peptide deformylase [Streptococcus peroris ATCC 700780]
 gi|321144864|gb|EFX40264.1| peptide deformylase [Streptococcus peroris ATCC 700780]
          Length = 141

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L +VSRP  + +  +   + + L+    T  +GLAA  IGV  R+++ +L        PM
Sbjct: 17  LSQVSRPASQEDLPLAKDLQDTLQANKET-CVGLAANMIGVQKRVIIFNL-----GMIPM 70

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP + +F   +   +EGCLS+   R    R   ITV Y D + Q Q I   G  A  
Sbjct: 71  VMFNPVLQSFEGPYET-EEGCLSLAGVRP-TTRYEKITVSYRDIHWQEQTITLTGFPAQI 128

Query: 134 LQHELDHLNG 143
            QHELDHL G
Sbjct: 129 CQHELDHLEG 138


>gi|89255883|ref|YP_513245.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115314370|ref|YP_763093.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|254367244|ref|ZP_04983272.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
 gi|290953373|ref|ZP_06557994.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313377|ref|ZP_06803985.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143714|emb|CAJ78913.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115129269|gb|ABI82456.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253062|gb|EBA52156.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
          Length = 211

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 16/150 (10%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 23  NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS + + R   K + +  + Y   N  
Sbjct: 81  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 138

Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148
            + I    D + A   QHE +HL G +++D
Sbjct: 139 GEKITGKLDSIAAVIFQHEFNHLLGSVYVD 168


>gi|156501866|ref|YP_001427931.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009647|ref|ZP_02274578.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368721|ref|ZP_04984734.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|156252469|gb|ABU60975.1| polypeptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121642|gb|EDO65812.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 210

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 16/150 (10%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 22  NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS + + R   K + +  + Y   N  
Sbjct: 80  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 137

Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148
            + I    D + A   QHE +HL G +++D
Sbjct: 138 GEKITGKLDSIAAVIFQHEFNHLLGSVYVD 167


>gi|317495963|ref|ZP_07954325.1| polypeptide deformylase [Gemella moribillum M424]
 gi|316913867|gb|EFV35351.1| polypeptide deformylase [Gemella moribillum M424]
          Length = 184

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 33  DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI--NPKIITFS--DDFS 88
           D   E +    GIGLAA QI V  R++ + + D  + +N + +   NPKII+ S    + 
Sbjct: 47  DEKAEKLGLKPGIGLAAPQINVSKRMIAVHIPDDENPENTVSYALYNPKIISNSVAKCYL 106

Query: 89  VYQEGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
              EGCLS+  + +  V R + I V   + N +   +    L + C QHE+DHLNGI+F 
Sbjct: 107 AGGEGCLSVDKEIQGYVPRYSKIKVVGYNENDEKITLTLTDLPSICFQHEIDHLNGIMFY 166

Query: 148 DHLSR 152
           DH+++
Sbjct: 167 DHINK 171


>gi|307609411|emb|CBW98900.1| polypeptide deformylase [Legionella pneumophila 130b]
          Length = 200

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 20/142 (14%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKNPMVF-----I 76
           +N +  +LI+ M + +Y+  G+GLAA Q+    +++ + + + A   R N  +F     I
Sbjct: 28  LNREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRDNAKIFPMHILI 87

Query: 77  NPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMD--CNAQHQIIYADGL 129
           NP            DF    EGC S+      V R   I ++Y D   NA  QI   +G 
Sbjct: 88  NPSYEPLPHTRIISDF----EGCYSVSSKAGKVPRYDEIRLKYYDEEGNAHQQI--ENGF 141

Query: 130 LATCLQHELDHLNGILFIDHLS 151
            A  LQHE+DHLNG+L  D L+
Sbjct: 142 YARVLQHEIDHLNGVLITDRLT 163


>gi|154685863|ref|YP_001421024.1| peptide deformylase [Bacillus amyloliquefaciens FZB42]
 gi|154351714|gb|ABS73793.1| DefB [Bacillus amyloliquefaciens FZB42]
          Length = 184

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLS----I 97
           G+GLAA Q  V  R++ +  +D           NPKI++ S + S     EGCLS    I
Sbjct: 58  GVGLAAPQTDVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPI 117

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           P Y   V R A I V+ +    +   I   G  A   QHE+DHLNG++F DH+ +
Sbjct: 118 PGY---VPRYARIRVKAVTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDK 169


>gi|21282703|ref|NP_645791.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483254|ref|YP_040478.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49485929|ref|YP_043150.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651700|ref|YP_185964.1| peptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|82750701|ref|YP_416442.1| peptide deformylase [Staphylococcus aureus RF122]
 gi|87161441|ref|YP_493689.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194790|ref|YP_499587.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221169|ref|YP_001331991.1| peptide deformylase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509274|ref|YP_001574933.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140509|ref|ZP_03565002.1| peptide deformylase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|257425143|ref|ZP_05601569.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427806|ref|ZP_05604204.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430441|ref|ZP_05606823.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433143|ref|ZP_05609501.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436042|ref|ZP_05612089.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|258423591|ref|ZP_05686481.1| polypeptide deformylase [Staphylococcus aureus A9635]
 gi|258451962|ref|ZP_05699978.1| polypeptide deformylase 2 [Staphylococcus aureus A5948]
 gi|262048678|ref|ZP_06021560.1| peptide deformylase [Staphylococcus aureus D30]
 gi|262052225|ref|ZP_06024431.1| peptide deformylase [Staphylococcus aureus 930918-3]
 gi|282903640|ref|ZP_06311528.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|282905409|ref|ZP_06313264.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908381|ref|ZP_06316212.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910668|ref|ZP_06318471.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913866|ref|ZP_06321653.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282916341|ref|ZP_06324103.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|282918790|ref|ZP_06326525.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282923912|ref|ZP_06331588.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|282925275|ref|ZP_06332932.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|283770153|ref|ZP_06343045.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
 gi|283957835|ref|ZP_06375286.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024016|ref|ZP_06378414.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132]
 gi|293500903|ref|ZP_06666754.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509859|ref|ZP_06668568.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|293526445|ref|ZP_06671130.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848080|ref|ZP_06788827.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|295427579|ref|ZP_06820211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|39930904|sp|Q8NX78|DEF_STAAW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56748622|sp|Q6GAC3|DEF_STAAS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56748624|sp|Q6GHZ4|DEF_STAAR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71153335|sp|Q5HGZ3|DEF_STAAC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21204141|dbj|BAB94839.1| pdf1 [Staphylococcus aureus subsp. aureus MW2]
 gi|49241383|emb|CAG40067.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49244372|emb|CAG42800.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285886|gb|AAW37980.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|82656232|emb|CAI80645.1| peptide deformylase [Staphylococcus aureus RF122]
 gi|87127415|gb|ABD21929.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202348|gb|ABD30158.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150373969|dbj|BAF67229.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368083|gb|ABX29054.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257272119|gb|EEV04251.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274647|gb|EEV06134.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278569|gb|EEV09188.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281236|gb|EEV11373.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284324|gb|EEV14444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|257846292|gb|EEV70316.1| polypeptide deformylase [Staphylococcus aureus A9635]
 gi|257860177|gb|EEV83009.1| polypeptide deformylase 2 [Staphylococcus aureus A5948]
 gi|259159896|gb|EEW44934.1| peptide deformylase [Staphylococcus aureus 930918-3]
 gi|259163134|gb|EEW47694.1| peptide deformylase [Staphylococcus aureus D30]
 gi|269940586|emb|CBI48965.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282313884|gb|EFB44276.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|282316600|gb|EFB46974.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282319781|gb|EFB50129.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|282321934|gb|EFB52258.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282325273|gb|EFB55582.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328046|gb|EFB58328.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330701|gb|EFB60215.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282592551|gb|EFB97561.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|282595258|gb|EFC00222.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|283460300|gb|EFC07390.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
 gi|283789984|gb|EFC28801.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920517|gb|EFD97580.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095908|gb|EFE26169.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467309|gb|EFF09826.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|294824880|gb|EFG41302.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|295127937|gb|EFG57571.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|298694326|gb|ADI97548.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED133]
 gi|302332701|gb|ADL22894.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|302750915|gb|ADL65092.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|315193760|gb|EFU24155.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315196121|gb|EFU26478.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323440640|gb|EGA98350.1| peptide deformylase [Staphylococcus aureus O11]
 gi|323441667|gb|EGA99313.1| peptide deformylase [Staphylococcus aureus O46]
 gi|329313759|gb|AEB88172.1| Peptide deformylase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728776|gb|EGG65197.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193]
 gi|329730791|gb|EGG67170.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 183

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           G+GLAA QI +  R++ + + D    K+   + +NPKI++ S  + +    EGCLS+ D 
Sbjct: 58  GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDN 117

Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            A  V R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 118 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|299116829|emb|CBN74941.1| chloroplast peptide deformylase (Partial) [Ectocarpus siliculosus]
          Length = 209

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P P LR  +  IE  + D+  L  +M ++MY+  G+GLAA Q+GV  RL+V + +  A 
Sbjct: 98  YPHPALRAENDEIEVFDDDVKKLARDMFKIMYAAKGVGLAAPQVGVNKRLMVFNPEGDAK 157

Query: 69  RK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              +  + +NPKI+         +EGCLS P      K  +  T+RY +
Sbjct: 158 NWLDEAILVNPKIVASGKGRITAEEGCLSFPGMEGK-KDWSTPTMRYSN 205


>gi|159026645|emb|CAO86579.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 181

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 6/117 (5%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           +PIL++ +  I+ + +SD  NLID+++  + +  G+G+AA Q+    RL ++    +   
Sbjct: 24  NPILQQKAPEIDNLLDSDCQNLIDSLITTVQAAHGVGIAAPQVARSLRLFIVASGPNPRY 83

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
             A   +P   INP+I+  S++     EGCLS+P++R  V R  +I V Y   N + 
Sbjct: 84  PDAPIMSPTAMINPRILQVSEEMVKGWEGCLSVPNWRGFVPRHQWIEVSYYGRNGRE 140


>gi|107028797|ref|YP_625892.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116690044|ref|YP_835667.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|170733379|ref|YP_001765326.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
 gi|105897961|gb|ABF80919.1| Peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116648133|gb|ABK08774.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|169816621|gb|ACA91204.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
          Length = 177

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L  +++P+E+ ++ ++  ++ +M E M+  +G GLAA QIG+  ++++    ++   
Sbjct: 10  DPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGNNNRY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INPK+     D     EGCLS+P  R  V R A +     D   Q    
Sbjct: 70  PDAPPVPETVLINPKVEYLPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGQKIDR 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+G  A  +QHE DHL G L+   ++   R   T+
Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165


>gi|15924081|ref|NP_371615.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926677|ref|NP_374210.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315]
 gi|148267584|ref|YP_001246527.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393639|ref|YP_001316314.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979414|ref|YP_001441673.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316344|ref|ZP_04839557.1| peptide deformylase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005878|ref|ZP_05144479.2| peptide deformylase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795178|ref|ZP_05644157.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|258407113|ref|ZP_05680262.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|258421795|ref|ZP_05684716.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|258436159|ref|ZP_05689142.1| peptide deformylase [Staphylococcus aureus A9299]
 gi|258443352|ref|ZP_05691695.1| peptide deformylase [Staphylococcus aureus A8115]
 gi|258444962|ref|ZP_05693279.1| peptide deformylase [Staphylococcus aureus A6300]
 gi|258449863|ref|ZP_05697961.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224]
 gi|258454962|ref|ZP_05702925.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937]
 gi|269202702|ref|YP_003281971.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894118|ref|ZP_06302349.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|282928613|ref|ZP_06336210.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|295405895|ref|ZP_06815704.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|296276492|ref|ZP_06858999.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246365|ref|ZP_06930209.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|56749813|sp|P68825|DEF_STAAM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56749814|sp|P68826|DEF_STAAU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56749815|sp|P99077|DEF_STAAN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22219285|pdb|1LQW|A Chain A, Crystal Structure Of S.Aureus Peptide Deformylase
 gi|22219286|pdb|1LQW|B Chain B, Crystal Structure Of S.Aureus Peptide Deformylase
 gi|75766236|pdb|2AI9|A Chain A, S.Aureus Polypeptide Deformylase
 gi|75766237|pdb|2AI9|B Chain B, S.Aureus Polypeptide Deformylase
 gi|9965494|gb|AAG02249.1| peptide deformylase Pdf1 [Staphylococcus aureus]
 gi|13700892|dbj|BAB42188.1| pdf1 [Staphylococcus aureus subsp. aureus N315]
 gi|14246861|dbj|BAB57253.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|147740653|gb|ABQ48951.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946091|gb|ABR52027.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1]
 gi|156721549|dbj|BAF77966.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|257789150|gb|EEV27490.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|257841268|gb|EEV65713.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|257842128|gb|EEV66556.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|257848848|gb|EEV72833.1| peptide deformylase [Staphylococcus aureus A9299]
 gi|257851442|gb|EEV75381.1| peptide deformylase [Staphylococcus aureus A8115]
 gi|257856084|gb|EEV79002.1| peptide deformylase [Staphylococcus aureus A6300]
 gi|257856783|gb|EEV79686.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224]
 gi|257862842|gb|EEV85607.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937]
 gi|262074992|gb|ACY10965.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282589652|gb|EFB94738.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|282763604|gb|EFC03733.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|285816772|gb|ADC37259.1| Peptide deformylase [Staphylococcus aureus 04-02981]
 gi|294969330|gb|EFG45350.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|297176731|gb|EFH35991.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|312829485|emb|CBX34327.1| peptide deformylase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130323|gb|EFT86310.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725200|gb|EGG61689.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172]
          Length = 183

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           G+GLAA QI +  R++ + + D    K+   + +NPKI++ S  + +    EGCLS+ D 
Sbjct: 58  GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDN 117

Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            A  V R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 118 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|329767966|ref|ZP_08259477.1| peptide deformylase 2 [Gemella haemolysans M341]
 gi|328838451|gb|EGF88059.1| peptide deformylase 2 [Gemella haemolysans M341]
          Length = 184

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 33  DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI--NPKIITFSDD--FS 88
           D   E +    GIGLAA QI V  R++ + + D    ++ + +   NPKII+ S    + 
Sbjct: 47  DEKAEKLGLKPGIGLAAPQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSAAKCYL 106

Query: 89  VYQEGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
              EGCLS+  + +  V R + I V   + N +   +    L A C QHE+DHLNG++F 
Sbjct: 107 AGGEGCLSVDKEIKGYVPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFY 166

Query: 148 DHLSR 152
           DH+++
Sbjct: 167 DHINK 171


>gi|283470302|emb|CAQ49513.1| peptide deformylase [Staphylococcus aureus subsp. aureus ST398]
          Length = 183

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           G+GLAA QI +  R++ + + D    K+   + +NPKI++ S  + +    EGCLS+ D 
Sbjct: 58  GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDN 117

Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            A  V R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 118 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|326438101|gb|EGD83671.1| hypothetical protein PTSG_12149 [Salpingoeca sp. ATCC 50818]
          Length = 214

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 18/157 (11%)

Query: 12  PILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-------I 61
           P+LR  + PI++    +  I NL+D++   +    G GL A QIG   +L V       I
Sbjct: 22  PVLREKAAPIQRSDITDGSIRNLVDSLSARLREDKGFGLCAPQIGESLQLFVMEVTPDMI 81

Query: 62  DLQDHAH-------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +L+ +         R  P+  I    + +    S ++E CLSIP Y A V R   I +  
Sbjct: 82  ELETNFRDIKMLDMRPVPLTAIANPRLKYGKKMSTHRESCLSIPGYSAHVTRPVDIHLTG 141

Query: 115 MDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHL 150
           +       +  A  G  A  +QHE+DHLNG L+ D +
Sbjct: 142 LCAVTGTDVSVALSGWTARIVQHEVDHLNGCLYTDKM 178


>gi|56707552|ref|YP_169448.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670023|ref|YP_666580.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224456620|ref|ZP_03665093.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604044|emb|CAG45036.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320356|emb|CAL08419.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
          Length = 211

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 16/150 (10%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 23  NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS + + R   K + +  + Y   N  
Sbjct: 81  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 138

Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148
            + I    D + A   QHE +HL G +++D
Sbjct: 139 GEKITGKLDSIAAIIFQHEFNHLLGSVYVD 168


>gi|94502278|ref|ZP_01308760.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94451171|gb|EAT14114.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 117

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 53/90 (58%)

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           VFINP II       + +EGCLSIP+   ++KR   I + Y D N +    + +GLL+  
Sbjct: 1   VFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKKYKQHFNGLLSII 60

Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +QHE DH+ G LFID++  LK  +I K  +
Sbjct: 61  IQHEYDHIEGKLFIDNIFILKNILIKKNFN 90


>gi|253731702|ref|ZP_04865867.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733674|ref|ZP_04867839.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130]
 gi|297208271|ref|ZP_06924701.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297591467|ref|ZP_06950105.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300912348|ref|ZP_07129791.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304381351|ref|ZP_07364004.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|253724516|gb|EES93245.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728374|gb|EES97103.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130]
 gi|296887010|gb|EFH25913.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297576353|gb|EFH95069.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300886594|gb|EFK81796.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304340334|gb|EFM06275.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438532|gb|ADQ77603.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60]
 gi|320141093|gb|EFW32940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143150|gb|EFW34940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 207

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           G+GLAA QI +  R++ + + D    K+   + +NPKI++ S  + +    EGCLS+ D 
Sbjct: 82  GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDN 141

Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            A  V R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 142 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 194


>gi|134302514|ref|YP_001122484.1| peptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|254370075|ref|ZP_04986081.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874370|ref|ZP_05247080.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|134050291|gb|ABO47362.1| polypeptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151568319|gb|EDN33973.1| hypothetical protein FTBG_01170 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840369|gb|EET18805.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158706|gb|ADA78097.1| peptide deformylase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 210

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 16/150 (10%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 22  NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS + + R   K + +  + Y   N  
Sbjct: 80  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 137

Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148
            + I    D + A   QHE +HL G +++D
Sbjct: 138 GEKITGKLDSIAAIIFQHEFNHLLGSVYVD 167


>gi|54113563|gb|AAV29415.1| NT02FT1681 [synthetic construct]
          Length = 211

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 16/150 (10%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 23  NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS + + R   K + +  + Y   N  
Sbjct: 81  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 138

Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148
            + I    D + A   QHE +HL G +++D
Sbjct: 139 GEKITGKLDSIAAIIFQHEFNHLLGSVYVD 168


>gi|166713383|ref|ZP_02244590.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 171

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAH 68
           D  L RV+  +  + S ++  L+ +M E M +  G+GLAA QI V  +L+V   +    +
Sbjct: 10  DKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERY 69

Query: 69  RKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            + P V      N +I   S++     EGCLSIP  RA + R  +I  R    +      
Sbjct: 70  PEAPAVPLTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIER 129

Query: 125 YADGLLATCLQHELDHLNGILF 146
            A+G  A  +QHE DHL G L+
Sbjct: 130 EAEGFHARVVQHEYDHLVGRLY 151


>gi|239636405|ref|ZP_04677407.1| peptide deformylase [Staphylococcus warneri L37603]
 gi|239597760|gb|EEQ80255.1| peptide deformylase [Staphylococcus warneri L37603]
          Length = 183

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           G+GLAA QI V  R++ + L D  + K+   + +NPK++++S  + +    EGCLS+ + 
Sbjct: 58  GVGLAAPQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDEN 117

Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               V R   +T++  D +     +   G  A   QHE+DHLNGI+F DH+
Sbjct: 118 IPGLVHRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYDHI 168


>gi|313638473|gb|EFS03653.1| peptide deformylase [Listeria seeligeri FSL S4-171]
          Length = 183

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 10/131 (7%)

Query: 28  IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           ++N  D  L   Y    G+G+AA Q+ V  R + I + D   R    V  NPKI + S  
Sbjct: 41  LINSQDEELAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQ 100

Query: 87  FSVYQ--EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
            +     EGCLS+    P Y   V RS  +T+   D N     +   G  A  +QHE+DH
Sbjct: 101 QACLSGGEGCLSVDREVPGY---VVRSERVTIDAFDENGTPLKLRFKGYPAIVVQHEIDH 157

Query: 141 LNGILFIDHLS 151
           LNGI+F DH++
Sbjct: 158 LNGIMFYDHIN 168


>gi|289434312|ref|YP_003464184.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170556|emb|CBH27096.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313633912|gb|EFS00628.1| peptide deformylase [Listeria seeligeri FSL N1-067]
          Length = 183

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 10/131 (7%)

Query: 28  IMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           ++N  D  L   Y    G+G+AA Q+ V  R + I + D   R    V  NPKI + S  
Sbjct: 41  LINSQDEELAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQ 100

Query: 87  FSVYQ--EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
            +     EGCLS+    P Y   V RS  +T+   D N     +   G  A  +QHE+DH
Sbjct: 101 QACLSGGEGCLSVDREVPGY---VVRSERVTIDAFDENGTPLKLRFKGYPAIVVQHEIDH 157

Query: 141 LNGILFIDHLS 151
           LNGI+F DH++
Sbjct: 158 LNGIMFYDHIN 168


>gi|332669559|ref|YP_004452567.1| peptide deformylase [Cellulomonas fimi ATCC 484]
 gi|332338597|gb|AEE45180.1| Peptide deformylase [Cellulomonas fimi ATCC 484]
          Length = 321

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 12/158 (7%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           K P+V    P+LR  + P +    + ++ +L+  M   M++  G+GLAA QIG+   + V
Sbjct: 30  KVPIVQAGHPVLRAQALPYDGQLADDELESLVHVMRATMHAAPGVGLAAPQIGLPVAVAV 89

Query: 61  IDLQD-------HAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           ++              + P+ F   +NP+     D+   + EGCLS+  Y+A V R   +
Sbjct: 90  LEDSGPPDGDVAQVRERAPLEFRVLVNPRYAAVDDERRAFYEGCLSVVGYQAVVARPRRV 149

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            +   D   +       G  A  +QHE DHL G+L++D
Sbjct: 150 HLVGADERGRPLDEVLTGWPARIVQHETDHLGGVLYLD 187


>gi|289551097|ref|YP_003472001.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
 gi|289180629|gb|ADC87874.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
          Length = 183

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITFSDDFSV--YQEGCLSI-PD 99
           G+GLAA QI +  +++ + L D  + R   ++ +NPK++++S  ++     EGCLS+  +
Sbjct: 58  GVGLAAPQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVVSYSVQYAYLPTGEGCLSVDKN 117

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               V R   +TV+  D + +   +   G  A  +QHE+DHLNGI+F DH+
Sbjct: 118 IPGLVHRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHI 168


>gi|224510906|pdb|3G6N|A Chain A, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser
 gi|224510907|pdb|3G6N|B Chain B, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser
          Length = 191

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 34/168 (20%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P LR V++ +   ++ + ++L   MLE + ++             G+GLAA Q+ +  R
Sbjct: 16  NPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKR 75

Query: 58  LVVIDLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRAD 103
           ++ +    H    +P         V  NPKI++ S  D      EGCLS+    P Y   
Sbjct: 76  IIAV----HVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGY--- 128

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++
Sbjct: 129 VVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIN 176


>gi|220702375|pdb|3CMD|A Chain A, Crystal Structure Of Peptide Deformylase From
           Vre-E.Faecium
 gi|220702376|pdb|3CMD|B Chain B, Crystal Structure Of Peptide Deformylase From
           Vre-E.Faecium
          Length = 196

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 34/168 (20%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P LR V++ +   ++ + ++L   MLE + ++             G+GLAA Q+ +  R
Sbjct: 21  NPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKR 80

Query: 58  LVVIDLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRAD 103
           ++ +    H    +P         V  NPKI++ S  D      EGCLS+    P Y   
Sbjct: 81  IIAV----HVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGY--- 133

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++
Sbjct: 134 VVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIN 181


>gi|317129375|ref|YP_004095657.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522]
 gi|315474323|gb|ADU30926.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522]
          Length = 193

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 16/156 (10%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYRL 58
           P LR+ +  +    N +   ++ NM++ +++S D           G+G+AA QI V  R+
Sbjct: 13  PTLRKRAEEVNLPANEEDTAILQNMIDFLIHSQDPEIAEKYDLRPGVGIAAPQINVSKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRYM 115
           + + + DH      +   NPKII+ S + +  +  EGCLS+  +    V R A I V   
Sbjct: 73  IAVRVDDHNENLIEVGLFNPKIISHSIETTHLENGEGCLSVDREVPGIVPRYARIKVEGT 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             + +   +   GL A   QHE+DHLNGI+F D + 
Sbjct: 133 SIDGEKITLKLKGLPAIVFQHEIDHLNGIMFYDRIE 168


>gi|69248512|ref|ZP_00604761.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257878822|ref|ZP_05658475.1| peptide deformylase [Enterococcus faecium 1,230,933]
 gi|257881459|ref|ZP_05661112.1| peptide deformylase [Enterococcus faecium 1,231,502]
 gi|257885731|ref|ZP_05665384.1| peptide deformylase [Enterococcus faecium 1,231,501]
 gi|257890681|ref|ZP_05670334.1| peptide deformylase [Enterococcus faecium 1,231,410]
 gi|258615107|ref|ZP_05712877.1| peptide deformylase [Enterococcus faecium DO]
 gi|260558387|ref|ZP_05830583.1| peptide deformylase [Enterococcus faecium C68]
 gi|261207094|ref|ZP_05921783.1| peptide deformylase [Enterococcus faecium TC 6]
 gi|289565904|ref|ZP_06446344.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|293556871|ref|ZP_06675432.1| peptide deformylase [Enterococcus faecium E1039]
 gi|293563619|ref|ZP_06678063.1| peptide deformylase [Enterococcus faecium E1162]
 gi|293567826|ref|ZP_06679167.1| peptide deformylase [Enterococcus faecium E1071]
 gi|294614601|ref|ZP_06694505.1| peptide deformylase [Enterococcus faecium E1636]
 gi|294618483|ref|ZP_06698047.1| peptide deformylase [Enterococcus faecium E1679]
 gi|294621220|ref|ZP_06700405.1| peptide deformylase [Enterococcus faecium U0317]
 gi|314938849|ref|ZP_07846120.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|314943654|ref|ZP_07850408.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|314949089|ref|ZP_07852449.1| peptide deformylase [Enterococcus faecium TX0082]
 gi|314952182|ref|ZP_07855200.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|314991844|ref|ZP_07857301.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|314996555|ref|ZP_07861592.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|29650280|gb|AAO88058.1| peptide deformylase [Enterococcus faecium]
 gi|68194406|gb|EAN08912.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257813050|gb|EEV41808.1| peptide deformylase [Enterococcus faecium 1,230,933]
 gi|257817117|gb|EEV44445.1| peptide deformylase [Enterococcus faecium 1,231,502]
 gi|257821587|gb|EEV48717.1| peptide deformylase [Enterococcus faecium 1,231,501]
 gi|257827041|gb|EEV53667.1| peptide deformylase [Enterococcus faecium 1,231,410]
 gi|260075561|gb|EEW63867.1| peptide deformylase [Enterococcus faecium C68]
 gi|260078722|gb|EEW66424.1| peptide deformylase [Enterococcus faecium TC 6]
 gi|289162277|gb|EFD10137.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|291589411|gb|EFF21218.1| peptide deformylase [Enterococcus faecium E1071]
 gi|291592503|gb|EFF24108.1| peptide deformylase [Enterococcus faecium E1636]
 gi|291595240|gb|EFF26569.1| peptide deformylase [Enterococcus faecium E1679]
 gi|291599216|gb|EFF30248.1| peptide deformylase [Enterococcus faecium U0317]
 gi|291600955|gb|EFF31246.1| peptide deformylase [Enterococcus faecium E1039]
 gi|291604419|gb|EFF33909.1| peptide deformylase [Enterococcus faecium E1162]
 gi|313589296|gb|EFR68141.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|313593549|gb|EFR72394.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|313595714|gb|EFR74559.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|313597691|gb|EFR76536.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|313641860|gb|EFS06440.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|313644505|gb|EFS09085.1| peptide deformylase [Enterococcus faecium TX0082]
          Length = 187

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 34/168 (20%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P LR V++ +   ++ + ++L   MLE + ++             G+GLAA Q+ +  R
Sbjct: 12  NPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRAD 103
           ++ +    H    +P         V  NPKI++ S  D      EGCLS+    P Y   
Sbjct: 72  IIAV----HVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGY--- 124

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++
Sbjct: 125 VVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIN 172


>gi|330686209|gb|EGG97823.1| peptide deformylase [Staphylococcus epidermidis VCU121]
          Length = 164

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           G+GLAA QI V  R++ + L D  + K+   + +NPK++++S  + +    EGCLS+ + 
Sbjct: 39  GVGLAAPQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDEN 98

Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               V R   +T++  D +     +   G  A   QHE+DHLNGI+F DH+
Sbjct: 99  IPGLVHRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYDHI 149


>gi|256847494|ref|ZP_05552940.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716158|gb|EEU31133.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 136

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 17/147 (11%)

Query: 4   KPLVIFPDPILRRVSRPIE----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           KP +I    IL +VS P +    KI  D+++ +       +    +GLAA  IG+  R++
Sbjct: 3   KP-IIHDQNILTKVSTPAQLSDVKIAQDLLDTLQ-----AHQESCVGLAANMIGIHKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I +         +  +NP+II     +   +EGCLS+   RA   R   ITV++MD   
Sbjct: 57  AITI-----GPARVAMLNPEIINHQQPYQT-EEGCLSLNGQRA-TTRYQTITVQFMDIQG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             Q I  +G  A   QHE+DH NGIL 
Sbjct: 110 HRQQITLNGFPAQIAQHEIDHCNGILI 136


>gi|242373312|ref|ZP_04818886.1| peptide deformylase [Staphylococcus epidermidis M23864:W1]
 gi|242349022|gb|EES40624.1| peptide deformylase [Staphylococcus epidermidis M23864:W1]
          Length = 183

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99
           G+GLAA QI V  R++ + L D  + K+   + +NPK+++ S  + +    EGCLS+  +
Sbjct: 58  GVGLAAPQINVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSHSVQEAYLPTGEGCLSVDEN 117

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               V R   +T++  D +     +   G  A   QHE+DHLNG++F DH+
Sbjct: 118 IPGLVHRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDHI 168


>gi|225352153|ref|ZP_03743176.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157400|gb|EEG70739.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 149

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 6/150 (4%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R    ++         
Sbjct: 1   MLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNINGKI----- 55

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
              +NP ++  +       EGCLS+P      +R+ +  VR +D   +  ++   G++  
Sbjct: 56  GYVLNP-VLEETCGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLEGKTVVLEGRGIMGR 114

Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            LQHE DHLNG +++D L + +R    + M
Sbjct: 115 MLQHETDHLNGHVYLDRLEKEERREAMRYM 144


>gi|148360734|ref|YP_001251941.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|296106200|ref|YP_003617900.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|148282507|gb|ABQ56595.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|295648101|gb|ADG23948.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
          Length = 200

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 21/159 (13%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKNPMVF-----I 76
           +N +  +LI+ M + +Y+  G+GLAA Q+    +++ + + + A   R N  +F     I
Sbjct: 28  LNREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRDNAKIFPMHILI 87

Query: 77  NPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYADGLL 130
           NP            DF    EGC S+      V R   I ++Y D     HQ I  +G  
Sbjct: 88  NPNYEPLPHTRIISDF----EGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQI-ENGFY 142

Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           A  LQHE+DHLNG+L  D   RL  D +   + +++ +R
Sbjct: 143 ARVLQHEIDHLNGVLITD---RLTPDCVQGTIEEMMTIR 178


>gi|228475040|ref|ZP_04059768.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|314936623|ref|ZP_07843970.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
 gi|228271025|gb|EEK12413.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|313655242|gb|EFS18987.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
          Length = 162

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    P+L + ++ I   + ++  L+ ++ + +YS +   L+A QIGV  R+ +
Sbjct: 1   MAIKKLVPSTHPVLFKKAKKITTFDENLKRLLLDIEDTLYSEEASALSAPQIGVSQRVAM 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  INPKI T S++  +  EG +++P+   +V+RS  ITV   D    
Sbjct: 61  IDME----AEGLLQLINPKIKTESNEKIIDLEGSVNLPNVFGEVERSKMITVEANDLEGH 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              + A   +A  + H +D L+GI F +
Sbjct: 117 EIELTAYDDVARMILHIIDQLDGIPFTE 144


>gi|227550841|ref|ZP_03980890.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257887905|ref|ZP_05667558.1| peptide deformylase [Enterococcus faecium 1,141,733]
 gi|257893294|ref|ZP_05672947.1| peptide deformylase [Enterococcus faecium 1,231,408]
 gi|257896477|ref|ZP_05676130.1| peptide deformylase [Enterococcus faecium Com12]
 gi|293379255|ref|ZP_06625401.1| peptide deformylase [Enterococcus faecium PC4.1]
 gi|227179939|gb|EEI60911.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257823959|gb|EEV50891.1| peptide deformylase [Enterococcus faecium 1,141,733]
 gi|257829673|gb|EEV56280.1| peptide deformylase [Enterococcus faecium 1,231,408]
 gi|257833042|gb|EEV59463.1| peptide deformylase [Enterococcus faecium Com12]
 gi|292642051|gb|EFF60215.1| peptide deformylase [Enterococcus faecium PC4.1]
          Length = 187

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 34/168 (20%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P LR V+  +   ++ + ++L   MLE + ++             G+GLAA Q+ +  R
Sbjct: 12  NPTLREVAEEVSLPLSEEDLSLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRAD 103
           ++ +    H    +P         V  NPKI++ S  D      EGCLS+    P Y   
Sbjct: 72  IIAV----HVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGY--- 124

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++
Sbjct: 125 VVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIN 172


>gi|85860534|ref|YP_462736.1| peptide deformylase [Syntrophus aciditrophicus SB]
 gi|85723625|gb|ABC78568.1| peptide deformylase [Syntrophus aciditrophicus SB]
          Length = 189

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 73/148 (49%), Gaps = 16/148 (10%)

Query: 13  ILRRVSR----PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----D 62
           ILR  SR    P+ +   D I  L+D  LE     D +GLAA QIG+  R+V+      D
Sbjct: 23  ILRTPSRDLPIPLSREARDQIQTLVDAFLE---RDDALGLAAPQIGINRRIVIFRNKGFD 79

Query: 63  LQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            +  + + K+  + INP+I     +     EGCLS P  + +V R   + VR  D +   
Sbjct: 80  EEGWSKKEKDYDLLINPRITQTRGELVKGAEGCLSCPSIQVEVNRFPEVKVRAFDRHGNR 139

Query: 122 -QIIYADGLLATCLQHELDHLNGILFID 148
               YAD  LA   QHELDHL G L +D
Sbjct: 140 ISKRYAD-FLARVAQHELDHLEGKLIVD 166


>gi|257468433|ref|ZP_05632527.1| hypothetical protein FulcA4_03769 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062699|ref|ZP_07927184.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185]
 gi|313688375|gb|EFS25210.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185]
          Length = 159

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 81/151 (53%), Gaps = 14/151 (9%)

Query: 2   VKKPLVIFPDPILRRVSRP-----IEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55
           +K+ +++  +  L ++S P     IE + S + +L D +++       G  +AA QIGV 
Sbjct: 1   MKREILLLGNEELYQISEPVKPDEIETLKSVVQDLHDTLMDFREKYHAGRAIAAPQIGVK 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            RL+ + +        P+VFINP ++ F D +     + C+S P+    V R     ++Y
Sbjct: 61  KRLLYMFID------KPVVFINP-VLEFPDNEMMEVLDDCMSFPNLLVKVMRHKRCRIKY 113

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +D + + Q++  +G L+  LQHE DHL+GIL
Sbjct: 114 LDMDWKEQVMSLEGDLSELLQHEFDHLDGIL 144


>gi|212715793|ref|ZP_03323921.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661160|gb|EEB21735.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM
           16992]
          Length = 149

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 6/143 (4%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R    ++         
Sbjct: 1   MLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVGLRAFSYNID------GK 54

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           + ++   ++  +       EGCLS+P      +R+ +  VR +D + +  ++   G++  
Sbjct: 55  IGYVLNPVLEETSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGKTVVLEGHGIMGR 114

Query: 133 CLQHELDHLNGILFIDHLSRLKR 155
            LQHE DHL+G +++D L + +R
Sbjct: 115 MLQHETDHLDGHVYLDRLEKEER 137


>gi|302870584|ref|YP_003839221.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315506821|ref|YP_004085708.1| transcriptional regulator, xre family [Micromonospora sp. L5]
 gi|302573443|gb|ADL49645.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315413440|gb|ADU11557.1| transcriptional regulator, XRE family [Micromonospora sp. L5]
          Length = 510

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 42  TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           + G+GLAA Q+G+ +   ++   D A   +P+V +NP+++  + +     EGCLS  D+R
Sbjct: 383 SKGVGLAAPQLGIGWSAALVRPADRA--ADPVVLLNPRVVDAATETDEQYEGCLSFFDHR 440

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             V R   I V +   +    I   +  +A  + HE+DHL G L++D ++
Sbjct: 441 GLVPRPLRIDVEHALWDGSRVITSYEYAMARLVAHEIDHLEGRLYVDRMA 490


>gi|194014264|ref|ZP_03052881.1| peptide deformylase [Bacillus pumilus ATCC 7061]
 gi|194013290|gb|EDW22855.1| peptide deformylase [Bacillus pumilus ATCC 7061]
          Length = 185

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 22/160 (13%)

Query: 12  PILRRVSR-----PIEKINSDIMNLID--------NMLEVMYSTDGIGLAAVQIGVLYRL 58
           P+LR+ +      P E+    + ++I+        +M E      G+GLAA QI V  R+
Sbjct: 13  PVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDADMAEKYGLRPGVGLAAPQINVSKRM 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS----IPDYRADVKRSAFITV 112
           + +  +D    +      NP+I++ S    +    EGCLS    IP +   V R   I V
Sbjct: 73  IAVHCEDEDGVEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGF---VPRYQKIRV 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +      +   I   G  A   QHE+DHLNGI+F DH+ +
Sbjct: 130 KGTTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169


>gi|284036700|ref|YP_003386630.1| formylmethionine deformylase [Spirosoma linguale DSM 74]
 gi|283815993|gb|ADB37831.1| formylmethionine deformylase [Spirosoma linguale DSM 74]
          Length = 168

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)

Query: 6   LVIFPDPILRRVSRPIEK----INSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59
           L++  DP L +   P+ +    +  D +  + N++E + +    G G+AA Q+G++ RL+
Sbjct: 7   LLLLGDPRLYQTCEPVLESELPLVPDWVADLHNVMEEIRAKYQFGRGIAAPQLGIMKRLI 66

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +++        P V INP+++  SD+     + C+S P+    V+R   +T+ Y D + 
Sbjct: 67  YLNVD------RPQVIINPELVAVSDETDELWDDCMSFPNLLVRVRRHKKLTLTYRDEHW 120

Query: 120 Q-HQIIYADGLLATCLQHELDHLNGIL 145
           Q H     D  ++  +QHE DHLNG L
Sbjct: 121 QTHTWDVTDWRISELIQHEYDHLNGFL 147


>gi|163790334|ref|ZP_02184766.1| peptide deformylase [Carnobacterium sp. AT7]
 gi|159874405|gb|EDP68477.1| peptide deformylase [Carnobacterium sp. AT7]
          Length = 187

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 26/164 (15%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58
           P LR V++ +   I+S+   L ++ML+ + ++             G+GLAA Q+ +  R+
Sbjct: 13  PTLRMVAKELTLPISSEEKQLGEDMLQFLKNSQDPEIAEKYSLRAGVGLAAPQLDISKRM 72

Query: 59  VVIDLQD-HAHRKNPM---VFINPKIITFSDDFS--VYQEGCLSI----PDYRADVKRSA 108
           + + +         P+   V +NPKII+ S   +     EGCLS+    P Y   V R +
Sbjct: 73  IAVHIPGIEEGTDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVPGY---VPRHS 129

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            IT+ Y D   +   I      A  +QHE+DH+NGI+F DH+++
Sbjct: 130 RITLTYFDLAGEAHKIRLKNYQAIVIQHEIDHINGIMFYDHINQ 173


>gi|54296635|ref|YP_123004.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris]
 gi|53750420|emb|CAH11814.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris]
          Length = 229

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 18/141 (12%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKN----PM-VFI 76
           +N +  +LI+ M + +Y+  G+GLAA Q+    +++ + + + A   R N    PM + I
Sbjct: 57  LNREDQDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRDNAKIYPMHILI 116

Query: 77  NPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYADGLL 130
           NP            DF    EGC S+      V R   I ++Y D     HQ I  +G  
Sbjct: 117 NPNYEPLPQARIISDF----EGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQI-ENGFY 171

Query: 131 ATCLQHELDHLNGILFIDHLS 151
           A  LQHE+DHLNG+L  D L+
Sbjct: 172 ARVLQHEIDHLNGVLITDRLT 192


>gi|196019297|ref|XP_002118957.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens]
 gi|190577546|gb|EDV18557.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens]
          Length = 395

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 15/101 (14%)

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIP--------DYRADVKRSAFITVRYMDCNAQ 120
            + P  F+NPKI    ++  V  EGCLS+P        +  ++VKR   I + Y++ N +
Sbjct: 55  ERKPYFFLNPKIKLNHNNEIVLPEGCLSVPMESIFKEYNGNSNVKRPEVIEIEYINENLE 114

Query: 121 HQIIYADG-------LLATCLQHELDHLNGILFIDHLSRLK 154
            +I+  DG         + C QHE DHL+G+LF+D L + K
Sbjct: 115 KEIMKIDGSKDDYWKWFSRCAQHENDHLDGVLFVDRLEKEK 155


>gi|160900287|ref|YP_001565869.1| peptide deformylase [Delftia acidovorans SPH-1]
 gi|160365871|gb|ABX37484.1| peptide deformylase [Delftia acidovorans SPH-1]
          Length = 179

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 7/143 (4%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVI--DLQDHA 67
           DP L RV++P+ + ++D ++L+ + L   M++ +G GLAA QIGV  ++VV    L +  
Sbjct: 11  DPRLLRVAQPVTEFDTDELHLLLSDLLDTMHAANGAGLAAPQIGVDLQMVVFGSGLPNPR 70

Query: 68  HRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +   P+    V INP I    +D  +  EGCLS+P  R  V R   I     D       
Sbjct: 71  YPDAPVVPRTVLINPVITPMGEDEHLDWEGCLSVPGMRGMVPRWNHIRYTGFDVFGDAID 130

Query: 124 IYADGLLATCLQHELDHLNGILF 146
              DG  A  +QHE DHL G L+
Sbjct: 131 RTVDGFHARVVQHECDHLWGKLY 153


>gi|159040050|ref|YP_001539303.1| XRE family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157918885|gb|ABW00313.1| transcriptional regulator, XRE family [Salinispora arenicola
           CNS-205]
          Length = 506

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 11/148 (7%)

Query: 13  ILRRVSRPIEKINSD--IMNLIDNMLEVMYSTD-------GIGLAAVQIGVLYRLVVIDL 63
           +LR+ +RP +    D    +++D +   ++  D       G+G+AA Q+G+     V+  
Sbjct: 341 LLRQPTRPFDLPREDRAARDVVDRLTATLFRLDELHPFSKGVGIAAPQLGIGRAAAVVRP 400

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D +    P+V +NP+++  + D     EGCLS  D R  V R   I V +   +    I
Sbjct: 401 PDLS--GEPVVLLNPRVVDAAPDTDEQYEGCLSFFDQRGLVPRPLRIDVEHTHIDGSRVI 458

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +A  + HE+DHL G L++D ++
Sbjct: 459 TSYEYGMARLVAHEIDHLEGRLYVDRMA 486


>gi|217964856|ref|YP_002350534.1| peptide deformylase [Listeria monocytogenes HCC23]
 gi|290893798|ref|ZP_06556777.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071]
 gi|254767592|sp|B8DCF7|DEF_LISMH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|217334126|gb|ACK39920.1| peptide deformylase [Listeria monocytogenes HCC23]
 gi|290556625|gb|EFD90160.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071]
 gi|307570585|emb|CAR83764.1| polypeptide deformylase [Listeria monocytogenes L99]
 gi|313609509|gb|EFR85061.1| peptide deformylase [Listeria monocytogenes FSL F2-208]
          Length = 183

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 22/160 (13%)

Query: 12  PILRRVSRPI--------EKINSDIMNLI-----DNMLEVMYSTDGIGLAAVQIGVLYRL 58
           P LR V+  +        +K+  D++  +     + M E      G+G+AA Q+ V  R 
Sbjct: 13  PALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEEMAEKYGLRGGVGIAAPQLAVTKRF 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112
           + I + D   R    V  NPKI + S   +     EGCLS+    P Y   V RS  +T+
Sbjct: 73  LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              D N     +      A  +QHE+DHLNGI+F DH+++
Sbjct: 130 DAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINK 169


>gi|255027127|ref|ZP_05299113.1| peptide deformylase [Listeria monocytogenes FSL J2-003]
          Length = 131

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI---- 97
           G+G+AA Q+ V  R + I + D   R    V  NPKI + S   +     EGCLS+    
Sbjct: 6   GVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREV 65

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           P Y   V RS  +T+   D N     +   G  A  +QHE+DHLNGI+F DH+++
Sbjct: 66  PGY---VVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINK 117


>gi|315302541|ref|ZP_07873376.1| peptide deformylase [Listeria ivanovii FSL F6-596]
 gi|313629103|gb|EFR97401.1| peptide deformylase [Listeria ivanovii FSL F6-596]
          Length = 183

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 22/160 (13%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58
           P LR+V+  +   ++ +   L   MLE + ++             G+G+AA Q+ V  R 
Sbjct: 13  PALRKVASEVTFPLSDEEKKLGREMLEFLINSQDEEVAEKYGLRGGVGIAAPQLAVTKRF 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112
           + I + D   R    V  NPKI + S   +     EGCLS+    P Y   V RS  +T+
Sbjct: 73  LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              D +     +   G  A  +QHE+DHLNGI+F DH+++
Sbjct: 130 DAFDEDGAPLKLRFKGYPAIVVQHEIDHLNGIMFYDHINK 169


>gi|257899443|ref|ZP_05679096.1| peptide deformylase [Enterococcus faecium Com15]
 gi|293573058|ref|ZP_06683999.1| peptide deformylase [Enterococcus faecium E980]
 gi|257837355|gb|EEV62429.1| peptide deformylase [Enterococcus faecium Com15]
 gi|291606877|gb|EFF36258.1| peptide deformylase [Enterococcus faecium E980]
          Length = 187

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 34/168 (20%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P LR V+  +   ++ + ++L   MLE + ++             G+GLAA Q+ +  R
Sbjct: 12  NPTLREVAEEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDYRAD 103
           ++ +    H    +P         V  NPKI++ S  D      EGCLS+    P Y   
Sbjct: 72  IIAV----HVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGY--- 124

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++
Sbjct: 125 VVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIN 172


>gi|254247880|ref|ZP_04941201.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184]
 gi|124872656|gb|EAY64372.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184]
          Length = 177

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L  +++P+E+ ++ ++  ++ +M E M+  +G GLAA QIG+  ++++    ++   
Sbjct: 10  DPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGNNNRY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INPK+     +     EGCLS+P  R  V R A +     D   Q    
Sbjct: 70  PDAPPVPETVLINPKVEYLPPEMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGQKIDR 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+G  A  +QHE DHL G L+   ++   R   T+
Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165


>gi|332024895|gb|EGI65083.1| Peptide deformylase, mitochondrial [Acromyrmex echinatior]
          Length = 240

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           DP+LR  +  IE      +D   +I +++ VM +    G++  QIG+ +++  I+  +  
Sbjct: 55  DPVLRGHAMKIEPEVIRMADFQKVITHLINVMRAYKSYGISGPQIGLPWQIFAIECTEEI 114

Query: 67  ----------AHRKN--PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                      H  N  PM +FINP++           EGC SI  Y A V R+  + ++
Sbjct: 115 MEGVEETVKKTHEMNIIPMTIFINPELKVMDYTPITLYEGCESIRGYSAAVPRAYEVEIK 174

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++ +A+     A G  A   QHE DHL G L+I+ +
Sbjct: 175 ALNASAEQFTWRACGWSARIAQHEYDHLQGKLYIEKM 211


>gi|260583921|ref|ZP_05851669.1| peptide deformylase [Granulicatella elegans ATCC 700633]
 gi|260158547|gb|EEW93615.1| peptide deformylase [Granulicatella elegans ATCC 700633]
          Length = 185

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 18/175 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V+   P LR+ +  I   ++ D+ +L   MLE ++++             G+GLAA 
Sbjct: 5   KDIVLEGHPALRKRAGKISFPLSDDLQHLAKEMLEFLHNSQDEEIAAKYELRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVK 105
           Q+G   +++ + +  +      +  V+INP+I+  S   +  +EG  CLS+  D    V 
Sbjct: 65  QLGKEIQMIALLIPGYEDEPALLDEVWINPRILRESVKKTCLKEGEGCLSVNRDVPGVVL 124

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           R   ITV+Y     + ++       A  +QHE+DHLNG++F DH+++ +   I +
Sbjct: 125 RPQRITVKYFTPEGEEKVKTLTDYEAIVVQHEIDHLNGVMFYDHINQAQPQYIPE 179


>gi|257866651|ref|ZP_05646304.1| peptide deformylase [Enterococcus casseliflavus EC30]
 gi|257872832|ref|ZP_05652485.1| peptide deformylase [Enterococcus casseliflavus EC10]
 gi|257876255|ref|ZP_05655908.1| peptide deformylase [Enterococcus casseliflavus EC20]
 gi|257800609|gb|EEV29637.1| peptide deformylase [Enterococcus casseliflavus EC30]
 gi|257806996|gb|EEV35818.1| peptide deformylase [Enterococcus casseliflavus EC10]
 gi|257810421|gb|EEV39241.1| peptide deformylase [Enterococcus casseliflavus EC20]
          Length = 187

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 26/165 (15%)

Query: 11  DPILRRVSRPIE--------KINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR V++ +          +  ++M  ++N  + + + +     G+GLAA Q+ +  R
Sbjct: 12  NPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQLDISKR 71

Query: 58  LVVIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKRS 107
           +  + +      K       V  NPKI++ S   +   EG  CLS+    P Y   V R 
Sbjct: 72  ITAVLVPSSDPEKTEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGY---VVRH 128

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           A IT+ Y D N + + +      A  +QHE+DHLNG++F DH+++
Sbjct: 129 ARITISYYDINGKKKKVRLKNYPAIVVQHEIDHLNGVMFYDHINQ 173


>gi|167626562|ref|YP_001677062.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596563|gb|ABZ86561.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 201

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 16/150 (10%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I +S+  N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 13  NEVLYQRCKPVNDIQSSETQNIIAEMYEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 70

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120
           + P+        VFINPKI   S+    +  GCLS + + R   K + +  + Y   N  
Sbjct: 71  RYPLSFDSVPFQVFINPKITKASEKRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 128

Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148
            + I    D + A   QHE +HL G +++D
Sbjct: 129 GKKITGKLDSIAAVIFQHEFNHLLGSVYVD 158


>gi|15596319|ref|NP_249813.1| peptide deformylase [Pseudomonas aeruginosa PAO1]
 gi|9947041|gb|AAG04511.1|AE004542_7 probable peptide deformylase [Pseudomonas aeruginosa PAO1]
          Length = 147

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 11  DPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           D  L R+++P+      + ++  LID+M E M+   G+GLAA QIGV  +LV+   +   
Sbjct: 10  DERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE 69

Query: 68  HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              +     P + +NP++    D+     EGCLS+P  R  V R   I  + +D      
Sbjct: 70  RYPDAPAVPPTILLNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQGLDPQDSRS 129

Query: 123 IIYADG 128
              + G
Sbjct: 130 TAASKG 135


>gi|299538334|ref|ZP_07051617.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
 gi|298725921|gb|EFI66513.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
          Length = 191

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 14/115 (12%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI---- 97
           G GL+A QIGV  R+  +   D       M+ INPKII+ S +  +    EGCLS+    
Sbjct: 66  GSGLSANQIGVNKRMFAVLFDDQE-----MMLINPKIISHSLNMIYLPEGEGCLSVNRPV 120

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           P +   V R   I V+  D +    I+   G  A  +QHE+DHLNGI+F D +++
Sbjct: 121 PGF---VPRYERIKVKAYDIDGHESIVQLQGYGAIVVQHEIDHLNGIMFYDRINK 172


>gi|290562011|gb|ADD38403.1| Peptide deformylase, mitochondrial [Lepeophtheirus salmonis]
          Length = 247

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 18/156 (11%)

Query: 11  DPILR-RVSR-PIEKINSDIMNLI-DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DPILR +V   P+ +I +  +N I D +L V+   D +G++A QIG    +  +      
Sbjct: 46  DPILRGKVEEIPLSEIKTPFINSIADKLLHVLKKYDAVGVSAPQIGTPIAMFAVGFTKSQ 105

Query: 68  HRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            +                 P V INP+I       S ++EGC S+  + A V R   + +
Sbjct: 106 IKSWSTETVAKEGMEPIDPPRVVINPRIDIIDSSSSTHREGCCSLYGFSAQVARYRKVLL 165

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           +  + + +     A    A  +QHE+DHL+G LFID
Sbjct: 166 KGYNIHGEAFEWLATDWTARIIQHEMDHLSGKLFID 201


>gi|284033559|ref|YP_003383490.1| formylmethionine deformylase [Kribbella flavida DSM 17836]
 gi|283812852|gb|ADB34691.1| formylmethionine deformylase [Kribbella flavida DSM 17836]
          Length = 162

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 6/151 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ 64
           +V  P P+L      ++ ++  ++ L  +++  M  + G +GLAA Q+GV  ++  +D+ 
Sbjct: 1   MVRAPHPVLATEGAEVDPLDPVMLALAADLVATMRISPGCVGLAAPQVGVAAQMFALDVT 60

Query: 65  DHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR-YMDCNAQ 120
            H   +      V  N  ++  +      +EGC+S+PD   DVKR+  +TV   +     
Sbjct: 61  GHPKTRTCHGVFVLCNAVVVEATRKEKA-REGCMSVPDLTGDVKRATRLTVTGVLPGTTD 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  D   A  +QHE+DH NG LF+D ++
Sbjct: 120 VVTLTTDAFEARAVQHEIDHCNGSLFLDRVA 150


>gi|332523659|ref|ZP_08399911.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314923|gb|EGJ27908.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176]
          Length = 136

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 9/139 (6%)

Query: 8   IFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           I  DP  L++VS+   K +  I   + + L   +  + +GLAA  IG   R+++I +   
Sbjct: 5   IVKDPFFLQQVSKQATKEDLPIGKDLQDTL-AFHRENCLGLAANMIGESKRIIIISMGFV 63

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                 +V  NPK++  SD + + +E CLS+   +   KR   ITV Y+D N + + +  
Sbjct: 64  -----DLVMFNPKLVKKSDSY-ITEESCLSLSGNQK-TKRYQKITVEYLDLNWRKKSLSL 116

Query: 127 DGLLATCLQHELDHLNGIL 145
           +GL A   QHELDHL+GIL
Sbjct: 117 NGLAAQICQHELDHLDGIL 135


>gi|262199337|ref|YP_003270546.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365]
 gi|262082684|gb|ACY18653.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365]
          Length = 171

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 4/104 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           G G+AA QIGV  RL+ +++        P+  INP+++  S++  V  + C S+P     
Sbjct: 48  GRGIAAPQIGVHQRLIFVNV--PGGFSGPL--INPQVVWSSEEQMVLWDDCFSLPGLMVR 103

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           V R+A + V + + + + + I AD  L+  LQHE+DHL+GIL +
Sbjct: 104 VARAAQVRVSFQNQHGEARSIEADRALSELLQHEIDHLDGILAV 147


>gi|15829160|ref|NP_326520.1| polypeptide deformylase 2 (PDF 2) (formylmethionine deformylase 2)
           [Mycoplasma pulmonis UAB CTIP]
 gi|23396551|sp|Q98PN3|DEF_MYCPU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|14090104|emb|CAC13862.1| POLYPEPTIDE DEFORMYLASE 2 (PDF 2) (FORMYLMETHIONINE DEFORMYLASE 2)
           [Mycoplasma pulmonis]
          Length = 198

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 31/181 (17%)

Query: 1   MVKKPLVIFPDPILRRVSR----PIEKINSD-----IMNLIDNMLEVMYSTDGIGLAAVQ 51
           M K  +V  P  +LR+ S+    P+ K N +     I ++ D+         G+G+AAVQ
Sbjct: 4   MFKVEIVQLPKKVLRQKSKNVNIPLNKTNIELAEKMIYHIDDSQGPNTKFRPGVGVAAVQ 63

Query: 52  IGVLYRLVVI--------DLQDHAHRKNPM-------VFINPKIITFSDDF-SVYQ-EGC 94
            G+L  +  +          +D +    P        V  NP++I  SD+  ++ Q EGC
Sbjct: 64  YGILKNVFYVCVPNDSRLTQRDSSQEVKPEDKYLFRDVIFNPEVIWKSDEMVAISQGEGC 123

Query: 95  LSI----PDYRADVKRSAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           LS+    P+    V+R   I V+ Y     +  I +  G +A   QHELDHLNG+LFID 
Sbjct: 124 LSVDESWPNQEGLVRRHMEIKVKGYSYFQKKEMIWHVKGYVAIVFQHELDHLNGMLFIDR 183

Query: 150 L 150
           +
Sbjct: 184 I 184


>gi|326316988|ref|YP_004234660.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373824|gb|ADX46093.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 179

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 7/140 (5%)

Query: 14  LRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN- 71
           L R++RP+ +  +  ++ L+ +M + M + +G GLAA QIGV  ++V+    +   R   
Sbjct: 14  LLRIARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVVIFGSNERNPRYPD 73

Query: 72  -----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                P V +NP+I    D+     EGCLS+P  R  V R + I     D +        
Sbjct: 74  RPLVPPTVLVNPRITPLGDEEEEDWEGCLSVPGLRGVVPRWSRIHYAGFDEHGTPIDRTV 133

Query: 127 DGLLATCLQHELDHLNGILF 146
           +G  A  +QHE DHL G L+
Sbjct: 134 EGFHARVVQHECDHLVGKLY 153


>gi|223985568|ref|ZP_03635622.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM
           12042]
 gi|223962475|gb|EEF66933.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM
           12042]
          Length = 141

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 10/140 (7%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQD 65
           I  DPIL  +SRP  +  ++ + +  ++ + +  ++    G+AA  IG   R++ + + D
Sbjct: 9   IVTDPIL--LSRPSREATAEDLAVAADLKDTLIAHADHCAGMAANMIGQSVRVIAVFVAD 66

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+V INP+II         +EGCLS+P  R   +R   + +RY D  ++ +   
Sbjct: 67  Q-----PLVLINPQIIKAEGRKYTAEEGCLSLPGTR-RAQRFEKLQLRYQDEQSRIKQRT 120

Query: 126 ADGLLATCLQHELDHLNGIL 145
             G  A  +QHELDH  GIL
Sbjct: 121 FSGFTAQVIQHELDHCEGIL 140


>gi|254457085|ref|ZP_05070513.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
 gi|207085877|gb|EDZ63161.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
          Length = 278

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---D 62
           ++ +P P        +   N +I+++I ++ + + +     LAA QIG +Y ++VI   D
Sbjct: 5   IITYPTPPSVEYGTDVRVFNEEIISIIQDLKDTIEANSLEALAAFQIGAMYNIIVIKKGD 64

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +   A     +  INP+II+ S+  S  ++     P   A+V+R   +++ Y D N +  
Sbjct: 65  MSFVAGDDGFLELINPRIISCSEKISTVEKTAY-FPGLSANVERHNNVSIIYEDKNFKQH 123

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            + A G  A  LQ ++D+  G  FI+ LS+ ++ +  KK+
Sbjct: 124 NLKATGGEAILLQRKIDYTFGSSFINKLSKDEKKLFEKKL 163


>gi|294155360|ref|YP_003559744.1| peptide deformylase [Mycoplasma crocodyli MP145]
 gi|291600027|gb|ADE19523.1| peptide deformylase [Mycoplasma crocodyli MP145]
          Length = 183

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 86/176 (48%), Gaps = 30/176 (17%)

Query: 1   MVKKPLVIFPDPILRRVSR--PIEKINSD-------IMNLIDNMLEVMYSTDGIGLAAVQ 51
           M +  LV  P  +LR  S+  PI  +  D       I ++ D+  E      G+G+AAVQ
Sbjct: 1   MYEVKLVKLPKKVLREKSKDVPIPLLPEDVELAEKMIYHIDDSQKEGSKFRAGVGVAAVQ 60

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQ--EGCLSI----PDYR 101
            G+L  +  + ++D    K+  +F     NPKII+ S+  +     EGCLS+    P   
Sbjct: 61  YGILKNVFYVHVRDFD--KDIEIFRDVLFNPKIISKSETLTALSDGEGCLSVSESWPGQS 118

Query: 102 ADVKRSAFITVR---YMDCNAQHQIIYAD--GLLATCLQHELDHLNGILFIDHLSR 152
             V RSA I V    YM    Q +++  D  G +A   QHELDHL G LFID + +
Sbjct: 119 GLVHRSARIVVEAYSYM----QKKVVEFDVFGYVAIVFQHELDHLEGKLFIDRIDK 170


>gi|328676563|gb|AEB27433.1| Peptide deformylase [Francisella cf. novicida Fx1]
          Length = 204

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 20/152 (13%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I S +I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 16  NKVLYQKCKPVADIQSAEIQNIITEMHEKM-QCNGIGLAANQIGYPYQIFMIEF-DSSNA 73

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           + P         VFINPKI   S     +  GCLS        KR    T + ++  A +
Sbjct: 74  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSA----LGEKRGKLATYKEIEYEAYN 129

Query: 122 Q-----IIYADGLLATCLQHELDHLNGILFID 148
           Q     I   + + A   QHE +HL G +++D
Sbjct: 130 QHGEKIIGKLESIAAVIFQHEFNHLLGSVYVD 161


>gi|284006808|emb|CBA72075.1| polypeptide deformylase [Arsenophonus nasoniae]
          Length = 219

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRK--------NPMVFINPKIITFSDDFSVY-QEGCLS 96
           GLAA Q+G  +++V+I +   A  K        +P + INP      +   +   EGC S
Sbjct: 86  GLAAPQVGYPFKIVIIQIPPEAKEKRKDVYDTLSPTILINPVYTPILNAGQIKDWEGCFS 145

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           IP+   +V R   I         +    +A G LA  +QHE+DHLNG L+ID+L
Sbjct: 146 IPNKMGEVYRYNEIYYEAYTLEGKKISAHAKGFLARLIQHEIDHLNGKLYIDYL 199


>gi|118497100|ref|YP_898150.1| peptide deformylase [Francisella tularensis subsp. novicida U112]
 gi|208778893|ref|ZP_03246239.1| polypeptide deformylase [Francisella novicida FTG]
 gi|118423006|gb|ABK89396.1| peptide deformylase [Francisella novicida U112]
 gi|208744693|gb|EDZ90991.1| polypeptide deformylase [Francisella novicida FTG]
          Length = 211

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 16/150 (10%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I S +I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 23  NKVLYQKCKPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS + + R   K + +  + Y   N  
Sbjct: 81  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 138

Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148
            + I    D + A   QHE +HL G +++D
Sbjct: 139 GEKITGKLDSIAAVIFQHEFNHLLGSVYVD 168


>gi|254372465|ref|ZP_04987954.1| hypothetical protein FTCG_00025 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570192|gb|EDN35846.1| hypothetical protein FTCG_00025 [Francisella novicida GA99-3549]
          Length = 210

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 16/150 (10%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I S +I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 22  NKVLYQKCKPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS + + R   K + +  + Y   N  
Sbjct: 80  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQH 137

Query: 121 HQIIYA--DGLLATCLQHELDHLNGILFID 148
            + I    D + A   QHE +HL G +++D
Sbjct: 138 GEKITGKLDSIAAVIFQHEFNHLLGSVYVD 167


>gi|223043863|ref|ZP_03613905.1| peptide deformylase [Staphylococcus capitis SK14]
 gi|222442767|gb|EEE48870.1| peptide deformylase [Staphylococcus capitis SK14]
          Length = 183

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99
           G+GLAA QI V  R++ + L D  + K+   + +NPK++++S  + +    EGCLS+  +
Sbjct: 58  GVGLAAPQIDVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDEN 117

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               V R   +T++  D +     +   G  A   QHE+DHLNG++F D++
Sbjct: 118 IPGLVHRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYI 168


>gi|322388290|ref|ZP_08061894.1| peptide deformylase [Streptococcus infantis ATCC 700779]
 gi|321140962|gb|EFX36463.1| peptide deformylase [Streptococcus infantis ATCC 700779]
          Length = 136

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 10/133 (7%)

Query: 14  LRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           L +VS+P  + +  +  +L D +L    S   +GLAA  IGV  R+++ ++        P
Sbjct: 12  LSQVSQPASQEDLPLAKDLQDTLLANRESC--VGLAANMIGVQKRVIIFNI-----GMIP 64

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           MV  NP + +F   +   +EGCLS+   R    R   ITV Y D + Q Q I   G  A 
Sbjct: 65  MVMFNPVLQSFEGSYET-EEGCLSLTGVRP-TTRYEKITVSYRDIHWQEQTITLTGFPAQ 122

Query: 133 CLQHELDHLNGIL 145
             QHELDHL GI+
Sbjct: 123 ICQHELDHLEGII 135


>gi|322386945|ref|ZP_08060569.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
 gi|321269227|gb|EFX52163.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
          Length = 210

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 22/135 (16%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITF 83
           M E M    G+GLAA Q+ +  R++ +   +L+D     NP         V  NPK++  
Sbjct: 67  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNLEDE--EGNPPKEAYSLAQVMYNPKVVAH 124

Query: 84  S--DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
           S  D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  +  +QHE
Sbjct: 125 SVQDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNSIVVQHE 181

Query: 138 LDHLNGILFIDHLSR 152
           +DH+NGI+F D ++ 
Sbjct: 182 IDHINGIMFYDRINE 196


>gi|332884559|gb|EGK04817.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836]
          Length = 190

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 16/138 (11%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGV---LYRLVVIDLQDHAHRKNPM-VFINPKI 80
           N D+  LID +   +    G+G+AA Q+G+   L+  + ID      +  P+ V INP+I
Sbjct: 47  NKDLQLLIDRLQMTLAVESGVGIAAPQVGIGRNLFLFLRID-----QKGMPVQVAINPRI 101

Query: 81  ITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ------HQIIYADGLLATC 133
           +  S + F   ++GCLS+P+      R  ++ V Y D N                     
Sbjct: 102 VGHSAETFLFERDGCLSVPELSGTTNRYTWVDVEYYDDNGTLIKERLSGGSRGGDFTGVI 161

Query: 134 LQHELDHLNGILFIDHLS 151
            QHE DHL GILF D L+
Sbjct: 162 FQHEYDHLQGILFTDRLA 179


>gi|327460694|gb|EGF07029.1| peptide deformylase [Streptococcus sanguinis SK1]
          Length = 210

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  RL+ + + +      NP         +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAASQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|239636306|ref|ZP_04677308.1| polypeptide deformylase [Staphylococcus warneri L37603]
 gi|239597661|gb|EEQ80156.1| polypeptide deformylase [Staphylococcus warneri L37603]
          Length = 162

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PI  + +  ++  +  +   + ++ + +Y+ +G  L+A QIG+  ++ +
Sbjct: 1   MSVKKLVKSEHPIFNQPANSVKHFDDQLKQTLIDVEDSLYALEGSALSANQIGINQQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++     +  +  INPKI   S++     EG +S+P+   +V+RS  I V   D N  
Sbjct: 61  VDME----MEGLLQLINPKIKKQSEETITDLEGSVSLPNVFGEVERSKMIVVESNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +D LNGI F +   R+
Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTEKAKRI 149


>gi|315281776|ref|ZP_07870335.1| peptide deformylase [Listeria marthii FSL S4-120]
 gi|313614586|gb|EFR88171.1| peptide deformylase [Listeria marthii FSL S4-120]
          Length = 183

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 22/160 (13%)

Query: 12  PILRRVSRPI--------EKINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYRL 58
           P LR V+  +        +K+  D++  +    D  L   Y    G+G+AA Q+ V  R 
Sbjct: 13  PALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEELAEKYGLRGGVGIAAPQLAVTKRF 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112
           + I + D   R    V  NPKI + S   +     EGCLS+    P Y   V RS  +T+
Sbjct: 73  LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              D N     +      A  +QHE+DHLNGI+F DH+++
Sbjct: 130 DAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINK 169


>gi|161524426|ref|YP_001579438.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|189350819|ref|YP_001946447.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|160341855|gb|ABX14941.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|189334841|dbj|BAG43911.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
          Length = 177

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAA-----VQIGVLYRLVVIDLQ 64
           DP L  V+RP+++ ++ ++  ++ +M E M+  +G GLAA         +++     D  
Sbjct: 10  DPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGSNDRY 69

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A      V INPK+     D     EGCLS+P  R  V R A +     D        
Sbjct: 70  PDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGAKIDR 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+G  A  +QHE DHL G L+   ++   R   T+
Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165


>gi|332365599|gb|EGJ43359.1| peptide deformylase [Streptococcus sanguinis SK1059]
          Length = 210

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  RL+ + + +      NP         +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|313901227|ref|ZP_07834715.1| peptide deformylase [Clostridium sp. HGF2]
 gi|312954185|gb|EFR35865.1| peptide deformylase [Clostridium sp. HGF2]
          Length = 184

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 18/159 (11%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           D I+R  S P+   + ++   L+ +ML  + S+              +G+AA+Q+GV  R
Sbjct: 13  DAIVRTKSEPVTLPLGAEDEALLQDMLTYVRSSQDAEIAEKENLRPAVGIAAIQLGVPKR 72

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAFITVRY 114
           ++ + + +     +    +NP+I++ S   +  +  EGCLS+  ++   V R+A ITVR 
Sbjct: 73  MLAVVVPNE-EGIDEYALVNPRIVSESVQRAYLKNGEGCLSVENEHEGIVPRAARITVRG 131

Query: 115 MDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
            D   + +I I A   LA  LQHE+DH +G LF D +++
Sbjct: 132 YDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170


>gi|183602110|ref|ZP_02963478.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683022|ref|YP_002469405.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191342|ref|YP_002968736.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196748|ref|YP_002970303.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218603|gb|EDT89246.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620672|gb|ACL28829.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249734|gb|ACS46674.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251302|gb|ACS48241.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177468|gb|ADC84714.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794335|gb|ADG33870.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9]
          Length = 217

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 15/157 (9%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR   V    +     +  LI+ M + M    G+GLA  QIG+   + V+ 
Sbjct: 29  PIVEAGEPVLREQCVRYDGQLSKHTLHKLIETMHKTMLDAPGVGLAGPQIGLNLAIAVV- 87

Query: 63  LQDHAHRKN----------PM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            +DHA+  +          P    INP      ++   + EGCLS   Y+A  KR   I 
Sbjct: 88  -EDHANGDDDGDPREIAEFPFHAIINPVYRPAGEETRSFYEGCLSFDGYQAVRKRYLDII 146

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             + D + +    +  G  A   QHE DHL+G L+ID
Sbjct: 147 AHWHDEDGKEHEEHLHGWPARIFQHETDHLSGELYID 183


>gi|332365804|gb|EGJ43561.1| peptide deformylase [Streptococcus sanguinis SK355]
          Length = 210

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  RL+ + + +      NP         +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|324992462|gb|EGC24383.1| peptide deformylase [Streptococcus sanguinis SK405]
 gi|327472415|gb|EGF17846.1| peptide deformylase [Streptococcus sanguinis SK408]
 gi|327488768|gb|EGF20567.1| peptide deformylase [Streptococcus sanguinis SK1058]
          Length = 210

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  RL+ + + +      NP         +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|328944870|gb|EGG39030.1| peptide deformylase [Streptococcus sanguinis SK1087]
          Length = 210

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNPM--------VFINPKIITFS- 84
           M E M    G+GLAA Q+ +  RL+ + + +      NP         +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGNPTKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|319892089|ref|YP_004148964.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161785|gb|ADV05328.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
 gi|323464802|gb|ADX76955.1| peptide deformylase 2 [Staphylococcus pseudintermedius ED99]
          Length = 183

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99
           G+GLAA QI V  R+  + L D     +     +NPKI++ S  D +    EGCLS+  D
Sbjct: 58  GVGLAAPQINVPKRMFAVYLPDDGEGHSYDFAIVNPKIVSHSVQDAYLPTGEGCLSVDED 117

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R   I ++  D +     +   G  A  +QHELDHLNG+LF DH+ +
Sbjct: 118 VPGLVHRHYRIKLKGYDIDGNEINLRLKGYPAIVVQHELDHLNGVLFYDHIDQ 170


>gi|324989743|gb|EGC21686.1| peptide deformylase [Streptococcus sanguinis SK353]
 gi|327468374|gb|EGF13859.1| peptide deformylase [Streptococcus sanguinis SK330]
          Length = 210

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  RL+ + + +      NP         +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|221198327|ref|ZP_03571373.1| peptide deformylase [Burkholderia multivorans CGD2M]
 gi|221208266|ref|ZP_03581270.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221171914|gb|EEE04357.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221182259|gb|EEE14660.1| peptide deformylase [Burkholderia multivorans CGD2M]
          Length = 177

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 10/158 (6%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH--- 66
           DP L  V+RP+++ ++ ++  ++ +M E M+  +G GLAA QIG+  ++++     +   
Sbjct: 10  DPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGSNNRY 69

Query: 67  --AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A      V INPK+     D     EGCLS+P  R  V R A   VRY   +     I
Sbjct: 70  PDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYA--KVRYSGSDQFGAKI 127

Query: 125 --YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              A+G  A  +QHE DHL G L+   ++   R   T+
Sbjct: 128 DRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165


>gi|307181864|gb|EFN69304.1| Peptide deformylase, mitochondrial [Camponotus floridanus]
          Length = 238

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 24/167 (14%)

Query: 11  DPILRRVSRPIE----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQD 65
           DP+LR  +  IE    K+  D   +I +++ +M S D  G++  QIG+ +++  I+   +
Sbjct: 54  DPVLRGHAMKIEPEVIKL-EDFQKVITHLINIMRSYDACGMSGPQIGLPWQIFAIEHTME 112

Query: 66  HAHRKNPMV-------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           H    + ++             FINP++        +  EGC S+  Y A V R+  I +
Sbjct: 113 HMKTSDEVIKKAYEMEVIPVTIFINPELKIIDHTPIILYEGCESVRGYSAAVPRAYEIEI 172

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             ++ +A+       G  A   QHE DHL G L+ID     K DM T
Sbjct: 173 TALNASAEQFTWRGRGWSARIAQHEYDHLQGELYID-----KMDMST 214


>gi|293364031|ref|ZP_06610767.1| peptide deformylase [Mycoplasma alligatoris A21JP2]
 gi|292552521|gb|EFF41295.1| peptide deformylase [Mycoplasma alligatoris A21JP2]
          Length = 183

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 23/182 (12%)

Query: 6   LVIFPDPILRR----VSRPIEKINSD-----IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           LV  P  +LR+    VS P+ + + D     I ++ D+  E      G+G+AAVQ G+L 
Sbjct: 6   LVKLPKKVLRQKSVNVSIPLIQEDIDLAEKMIYHIDDSQKENSKFRPGVGVAAVQYGILK 65

Query: 57  RLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKRSA 108
            +  + ++D  + K     V  NPKII+ S+  +   EG  CLS+    P     V R A
Sbjct: 66  NVFYVHVRDSVNNKEIFRDVLFNPKIISRSETKTALSEGEGCLSVHEDWPGQEGFVHRDA 125

Query: 109 FITVRYMDCNAQHQIIYAD--GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            + V       Q +++  D  G +A   QHELDHL G LFID   R+ +    KK++  +
Sbjct: 126 RVIVEAYSY-FQKKVVTFDVFGYVAIVFQHELDHLQGNLFID---RINKKQPWKKVANAI 181

Query: 167 QL 168
            L
Sbjct: 182 YL 183


>gi|145596629|ref|YP_001160926.1| formylmethionine deformylase [Salinispora tropica CNB-440]
 gi|145305966|gb|ABP56548.1| formylmethionine deformylase [Salinispora tropica CNB-440]
          Length = 506

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 11/148 (7%)

Query: 13  ILRRVSRPI-----EKINSDIMNLIDNML----EVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +LR+ +RP      E++    ++ +   L    E+   + G+G+AA Q+G+     V+  
Sbjct: 341 LLRQPTRPFDLPREEEVAQQAVDRLTAALVRLDELHPFSKGVGVAAPQLGIGRAAAVVRP 400

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D      P+V +NP+++  + D     EGCLS  D R  V R   I V +   +    I
Sbjct: 401 PDRG--GEPVVLLNPRVVDAAPDSDEQYEGCLSFFDQRGLVPRPLRIDVEHTHLDGSRVI 458

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +A  + HE+DHL G L++D ++
Sbjct: 459 TSYEYAMARLVAHEIDHLEGRLYVDRMA 486


>gi|300854965|ref|YP_003779949.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300435080|gb|ADK14847.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 160

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 13/151 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTD-GIGLAAVQIGV 54
           M+K+ L++  D + ++ S P+EK     I   +++L D +++     + G  +AA QIGV
Sbjct: 1   MIKEILLLGNDALYKK-SLPVEKEDMDSIKETVLDLHDTLIDFRKKYNAGRAIAAPQIGV 59

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             RL+      + +   P+VFINP +   + +     + C+S P+    VKR    ++ Y
Sbjct: 60  FKRLI------YMYIDKPIVFINPVLKFDNKEMMDVMDDCMSFPNLLVKVKRYKECSIIY 113

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            D N   + +   G L+  +QHE DHL+GIL
Sbjct: 114 KDINFADKTLKFKGDLSELIQHEYDHLDGIL 144


>gi|325688984|gb|EGD30992.1| peptide deformylase [Streptococcus sanguinis SK115]
          Length = 210

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  RL+ + + +      NP         +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAAPQLNISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|269955472|ref|YP_003325261.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304153|gb|ACZ29703.1| Peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
          Length = 223

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 14/159 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+V   DP+LR  + P      D++  L + M   M++  G+GLAA Q+G+   L V++ 
Sbjct: 31  PIVQSGDPVLRTPAAPYTGQLGDLLPRLAEVMRRTMHAAPGVGLAAPQVGIGLALAVVED 90

Query: 64  QDH---AHRKNPMVF---INPKIITFSDDFSV-------YQEGCLSIPDYRADVKRSAFI 110
           + +      + P+ F    NP     +++          + EGCLSI  + A V R   +
Sbjct: 91  RGNESDPRERTPLPFRLLANPAYEPVAEEGPSGTLRRVPFFEGCLSIDGWHALVARHHRV 150

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            +   D +         G  A  +QHE DHL G L++DH
Sbjct: 151 RLTGQDADGAPIDEVLTGWPARIIQHETDHLRGELYLDH 189


>gi|221215452|ref|ZP_03588416.1| peptide deformylase [Burkholderia multivorans CGD1]
 gi|221164636|gb|EED97118.1| peptide deformylase [Burkholderia multivorans CGD1]
          Length = 177

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L  V+RP+++ ++ ++  ++ +M E M+  +G GLAA QIG+  ++++     +   
Sbjct: 10  DPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGSNNRY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INPK+     D     EGCLS+P  R  V R A +     D        
Sbjct: 70  PDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGAKIDR 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+G  A  +QHE DHL G L+   ++   R   T+
Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165


>gi|115437554|ref|NP_001043323.1| Os01g0555800 [Oryza sativa Japonica Group]
 gi|113532854|dbj|BAF05237.1| Os01g0555800 [Oryza sativa Japonica Group]
          Length = 121

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 47/78 (60%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +V INPK+ T S   +++ EGCLS+  YRA V+R   + V  +D N +   + A G  A 
Sbjct: 19  LVIINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQAR 78

Query: 133 CLQHELDHLNGILFIDHL 150
            LQHE DHL G L++D +
Sbjct: 79  ILQHECDHLEGTLYVDTM 96


>gi|297243759|ref|ZP_06927689.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
 gi|298252952|ref|ZP_06976746.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
 gi|296888180|gb|EFH26922.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
 gi|297533316|gb|EFH72200.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
          Length = 217

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 10/154 (6%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +   + +  LI  M   M    G+GLAA QIG+   + VI+
Sbjct: 30  PIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAVIE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P           INP           + EGCLS+  Y+A  +R   I   +
Sbjct: 90  DHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDIQATW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            D + +       G  A   QHE DHL G L+ID
Sbjct: 150 QDEDGKQHSERLHGWPARIFQHETDHLRGELYID 183


>gi|270292421|ref|ZP_06198632.1| peptide deformylase [Streptococcus sp. M143]
 gi|306824859|ref|ZP_07458203.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|270278400|gb|EFA24246.1| peptide deformylase [Streptococcus sp. M143]
 gi|304433070|gb|EFM36042.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 136

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        PMV  NP ++++   +   +EGCLS+   R   
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPMVMFNPILLSYKGPYET-EEGCLSLTGVRT-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
            R   ITV Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  TRYETITVSYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|309798745|ref|ZP_07693009.1| polypeptide deformylase [Streptococcus infantis SK1302]
 gi|308117562|gb|EFO54974.1| polypeptide deformylase [Streptococcus infantis SK1302]
          Length = 136

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L +VS+P  + +  +   + + LE    T  +GLAA  IGV  R+++ ++        PM
Sbjct: 12  LSQVSQPASQEDLPLAKDLQDTLEANRET-CVGLAANMIGVQKRVIIFNIG-----MIPM 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP + +F   +   +EGCLS+   R    R   ITV Y D + + Q I   G  A  
Sbjct: 66  VMFNPVLKSFEGPYET-EEGCLSLTGVRP-TTRYEKITVSYRDIHWKEQTITLTGFPAQI 123

Query: 134 LQHELDHLNG 143
            QHELDHL G
Sbjct: 124 CQHELDHLEG 133


>gi|324993584|gb|EGC25504.1| peptide deformylase [Streptococcus sanguinis SK405]
 gi|324995104|gb|EGC27016.1| peptide deformylase [Streptococcus sanguinis SK678]
          Length = 136

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 9/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           + +P E+ + + + L  ++ + + +   + IGLAA  IGV  R ++       +   P+V
Sbjct: 12  LQQPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRAIIF-----LYGLVPVV 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP + + S  +   +EGCLS+   R   +R   ITV Y+D N Q Q +   GL A   
Sbjct: 67  MFNPVLRSKSGPYQT-EEGCLSLTGSRP-TQRYQEITVDYLDKNWQQQTMTLKGLPAQIC 124

Query: 135 QHELDHLNGIL 145
           QHELDHL GIL
Sbjct: 125 QHELDHLEGIL 135


>gi|90961626|ref|YP_535542.1| peptide deformylase [Lactobacillus salivarius UCC118]
 gi|227890713|ref|ZP_04008518.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
 gi|301299265|ref|ZP_07205551.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|122993074|sp|Q1WU76|DEF_LACS1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|90820820|gb|ABD99459.1| Peptide deformylase [Lactobacillus salivarius UCC118]
 gi|227867651|gb|EEJ75072.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
 gi|300214436|gb|ADJ78852.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus
           salivarius CECT 5713]
 gi|300853109|gb|EFK80707.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 186

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 25/164 (15%)

Query: 11  DPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57
           +P LR  ++ IE        K+  D+M  ++N     + +  +   G+GLAA Q+ V  R
Sbjct: 12  NPTLRARAKAIEFPLSEEDKKLAHDMMEFLENSQNPEIAKKYHLRAGVGLAAPQVDVSKR 71

Query: 58  LVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLS----IPDYRADVKRSA 108
           +  + +        P+   V INP I++ S   +   EG  CLS    IP Y   V R  
Sbjct: 72  MTAVLVPGIEDDDEPIFKHVLINPTILSESVQLAALGEGEGCLSVDRDIPGY---VPRHD 128

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I +R+ D +    +       A  +QHE+DHLNGILF DH+++
Sbjct: 129 RIKLRWYDLDGNKHVERLRDYPAIVVQHEIDHLNGILFYDHINK 172


>gi|226199013|ref|ZP_03794576.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
 gi|225929113|gb|EEH25137.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
          Length = 131

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 8/110 (7%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAH 68
           DP L  V+RP+E  N+ ++  L+ +M E M+  +G GLAA QIGV  ++++        +
Sbjct: 10  DPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGSSERY 69

Query: 69  RKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            + P     V +NP I     D     EGCLS+P  R  V R  +  VRY
Sbjct: 70  PEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSR--YRRVRY 117


>gi|125718849|ref|YP_001035982.1| peptide deformylase [Streptococcus sanguinis SK36]
 gi|125498766|gb|ABN45432.1| Peptide deformylase, putative [Streptococcus sanguinis SK36]
 gi|324996009|gb|EGC27920.1| peptide deformylase [Streptococcus sanguinis SK678]
          Length = 210

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  RL+ + + +      NP         +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|313895677|ref|ZP_07829233.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975803|gb|EFR41262.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 137

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 8/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           + +P E+     +++ +++L+ + S  G  +GLAA  IG   R++ + +      K+ +V
Sbjct: 12  LGQPSEEAVKSDLSIANDLLDTLKSHVGHCVGLAANMIGEKKRIIAVCIG-----KSHLV 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
            +N +I+  S +    +EGCLS+P  R  + R  +I V Y D   + Q     G  A  +
Sbjct: 67  MLNAEIVKSSTEQYETEEGCLSLPGQRKTM-RHTWIEVTYRDIKFRKQKNKFSGFTAQII 125

Query: 135 QHELDHLNGIL 145
           QHE+DH NGIL
Sbjct: 126 QHEIDHCNGIL 136


>gi|327462775|gb|EGF09097.1| peptide deformylase [Streptococcus sanguinis SK1057]
          Length = 210

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  RL+ + + +      NP         +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|323353371|ref|ZP_08087904.1| peptide deformylase [Streptococcus sanguinis VMC66]
 gi|322121317|gb|EFX93080.1| peptide deformylase [Streptococcus sanguinis VMC66]
          Length = 136

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 9/129 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + + +   + IGLAA  +GV  R+++       +   P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMVGVRKRVIIF-----LYGLVPVVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +EGCLS+   R   +R   ITV Y+D N Q Q +   GL A   QH
Sbjct: 69  NPVLRSKSGPYQT-EEGCLSLTGSRP-TQRYQEITVDYLDKNWQQQTMTLKGLPAQICQH 126

Query: 137 ELDHLNGIL 145
           ELDHL GIL
Sbjct: 127 ELDHLEGIL 135


>gi|21730762|pdb|1LMH|A Chain A, Crystal Structure Of S. Aureus Peptide Deformylase
          Length = 184

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           G+GLAA QI +  R + + + D    K+     +NPKI++ S  + +    EGCLS+ D 
Sbjct: 58  GVGLAAPQINISKRXIAVLIPDDGSGKSYDYXLVNPKIVSHSVQEAYLPTGEGCLSVDDN 117

Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            A  V R   IT++  D       +   G  A   QHE+DHLNG+ F DH+ +
Sbjct: 118 VAGLVHRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVXFYDHIDK 170


>gi|307299459|ref|ZP_07579259.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914858|gb|EFN45245.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 183

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 12/156 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M+   +++  +P+LR  S P+    S      + ++   L+     +G G  ++A QIG+
Sbjct: 1   MMTCEVLLLGNPLLRETSSPVSDFRSQETIGQIVMLKQALDEFRKENGFGRGISAPQIGI 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           L R+V ++L      +   V  NP+I+  S       + C+S P     ++RS  + V Y
Sbjct: 61  LKRIVALNLG-----QGSFVIANPRIVDRSRATFTMWDDCMSFPHLLIRLERSLSVDVVY 115

Query: 115 MDCNA-QHQIIYADGLLATCLQHELDHLNGILFIDH 149
            D    +++    D   +  LQHE+DHL+GIL IDH
Sbjct: 116 EDERGIEYEWKGVDQARSELLQHEIDHLDGILAIDH 151


>gi|332359300|gb|EGJ37121.1| peptide deformylase [Streptococcus sanguinis SK49]
          Length = 210

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  RL+ + + +      NP         +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|229548080|ref|ZP_04436805.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|257091309|ref|ZP_05585670.1| peptide deformylase [Enterococcus faecalis CH188]
 gi|312905368|ref|ZP_07764483.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|229306766|gb|EEN72762.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|257000121|gb|EEU86641.1| peptide deformylase [Enterococcus faecalis CH188]
 gi|310631392|gb|EFQ14675.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|315162546|gb|EFU06563.1| peptide deformylase [Enterococcus faecalis TX0645]
 gi|315578554|gb|EFU90745.1| peptide deformylase [Enterococcus faecalis TX0630]
          Length = 187

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 11  DPILRRVSR----PIEK----INSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR V+     PI K    +  D++  + N  + + + +     G+GLAA Q+ +  R
Sbjct: 12  NPTLRAVAEEVPVPITKEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110
           ++ + +  +    + P    V  NPKI++ S  D  + + EGCLS+  D    V R   I
Sbjct: 72  IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y D   +   +      A  +QHE+DH+NGI+F DH+++
Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173


>gi|52840852|ref|YP_094651.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52627963|gb|AAU26704.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 237

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 24/138 (17%)

Query: 30  NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKN----PM-VFINP---- 78
           +LI+ M + +Y+  G+GLAA Q+    +++ + + + A   R N    PM + INP    
Sbjct: 71  DLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRDNAKIYPMHILINPNYEP 130

Query: 79  ----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYADGLLATC 133
               +II+   DF    EGC S+      V R   I ++Y D     HQ I  +G  A  
Sbjct: 131 LPQARIIS---DF----EGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQI-ENGFYARV 182

Query: 134 LQHELDHLNGILFIDHLS 151
           LQHE+DHLNG+L  D L+
Sbjct: 183 LQHEIDHLNGVLITDRLT 200


>gi|171058566|ref|YP_001790915.1| peptide deformylase [Leptothrix cholodnii SP-6]
 gi|170776011|gb|ACB34150.1| peptide deformylase [Leptothrix cholodnii SP-6]
          Length = 178

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 20/149 (13%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R+++P+ + ++ ++  L+ ++ + M + +G G+AA QIGV   +V+      AH 
Sbjct: 11  DPRLLRIAQPVRRFDTPELHQLVQDLRDTMAAANGAGIAAPQIGVDLAVVIFG---SAH- 66

Query: 70  KNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            NP           V +NP+I+  SDD     EGCLS+P  R  V R   I  RY   + 
Sbjct: 67  -NPRYPDAPPVPATVLVNPQIVALSDDEEDGWEGCLSVPGLRGVVPRCTRI--RYSGFDP 123

Query: 120 QHQII--YADGLLATCLQHELDHLNGILF 146
             Q+I   ADG  A  +QHE DHL G L+
Sbjct: 124 VGQLIEREADGFHARVVQHECDHLIGKLY 152


>gi|314933288|ref|ZP_07840653.1| peptide deformylase [Staphylococcus caprae C87]
 gi|313653438|gb|EFS17195.1| peptide deformylase [Staphylococcus caprae C87]
          Length = 183

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99
           G+GLAA QI +  R++ + L D  + K+   + +NPK++++S  + +    EGCLS+  +
Sbjct: 58  GVGLAAPQIDLAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDEN 117

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               V R   +T++  D +     +   G  A   QHE+DHLNG++F D++
Sbjct: 118 IPGLVHRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYI 168


>gi|283783592|ref|YP_003374346.1| peptide deformylase [Gardnerella vaginalis 409-05]
 gi|283442075|gb|ADB14541.1| peptide deformylase [Gardnerella vaginalis 409-05]
          Length = 217

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 10/154 (6%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +   + +  LI  M   M    G+GLAA QIG+   + VI+
Sbjct: 30  PIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAVIE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P           INP           + EGCLS+  Y+A  +R   +   +
Sbjct: 90  DHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDVQATW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            D + +       G  A   QHE DHL G L+ID
Sbjct: 150 QDEDGKQHSERLHGWPARIFQHETDHLRGELYID 183


>gi|116511359|ref|YP_808575.1| peptide deformylase [Lactococcus lactis subsp. cremoris SK11]
 gi|125623399|ref|YP_001031882.1| peptide deformylase [Lactococcus lactis subsp. cremoris MG1363]
 gi|806487|gb|AAC41454.1| ORF211 [Lactococcus lactis subsp. cremoris]
 gi|116107013|gb|ABJ72153.1| N-formylmethionyl-tRNA deformylase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|124492207|emb|CAL97136.1| putative membrane protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070146|gb|ADJ59546.1| peptide deformylase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 211

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 22/136 (16%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI------DLQDHAHRKNPM-------VFINPKII 81
           M E M    G+GLAA Q+G+L +++ +      ++ +  +   P        +  N K++
Sbjct: 64  MAEKMGLRGGVGLAANQLGLLKKVIAVLIPNEPEVDEEGNEIPPKEAYKMREIMYNAKVV 123

Query: 82  TFS-DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           + S  D +V   EGCLS+    P Y   V R A +TV Y +   + + I      A C+Q
Sbjct: 124 SHSVQDAAVEGGEGCLSVDREVPGY---VVRHARVTVEYYNKEGEKKKIRLKDFPAICVQ 180

Query: 136 HELDHLNGILFIDHLS 151
           HE+DH NG++F DH++
Sbjct: 181 HEIDHTNGVMFYDHIN 196


>gi|242242396|ref|ZP_04796841.1| peptide deformylase [Staphylococcus epidermidis W23144]
 gi|242234152|gb|EES36464.1| peptide deformylase [Staphylococcus epidermidis W23144]
          Length = 183

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99
           G+GLAA QI    R++ + L D  + K+   + +NPKI+++S  + +    EGCLS+  +
Sbjct: 58  GVGLAAPQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDEN 117

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               V R   +T++  D +     +   G  A   QHE+DHLNGI+F D++
Sbjct: 118 IPGLVHRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYI 168


>gi|293365837|ref|ZP_06612542.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|307703294|ref|ZP_07640239.1| polypeptide deformylase family protein [Streptococcus oralis ATCC
           35037]
 gi|322375601|ref|ZP_08050113.1| peptide deformylase [Streptococcus sp. C300]
 gi|291315661|gb|EFE56109.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|307623160|gb|EFO02152.1| polypeptide deformylase family protein [Streptococcus oralis ATCC
           35037]
 gi|321279309|gb|EFX56350.1| peptide deformylase [Streptococcus sp. C300]
          Length = 136

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        PMV  NP ++++   +   +EGCLS+   R+  
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPMVMFNPVLLSYIGPYET-EEGCLSLTGVRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
            R   ITV Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  TRYETITVSYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|270157521|ref|ZP_06186178.1| polypeptide deformylase [Legionella longbeachae D-4968]
 gi|269989546|gb|EEZ95800.1| polypeptide deformylase [Legionella longbeachae D-4968]
          Length = 219

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 15  RRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKN- 71
           + V  P+ + + D++  + + L+ +    G+GLAA Q+    R++ I + + A   R N 
Sbjct: 40  QEVRFPLSQADKDLIAAMSSKLQKL---GGVGLAAPQVNFPRRIIAIYIPEEAALLRDNI 96

Query: 72  ----PM-VFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
               PM + INP            DF    EGC S+      V R   I V Y D   Q 
Sbjct: 97  KSFYPMHIMINPSYTPVEGSAIQHDF----EGCYSVASKSGKVPRYEQINVSYYDELGQF 152

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                +G  +  LQHE+DHLNG L ID   RL  D +   + +++ LR
Sbjct: 153 HRQTEEGFYSRVLQHEIDHLNGFLIID---RLTPDCVQGSVEEMMTLR 197


>gi|319401586|gb|EFV89796.1| peptide deformylase [Staphylococcus epidermidis FRI909]
          Length = 183

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99
           G+GLAA QI    R++ + L D  + K+   + +NPKI+++S  + +    EGCLS+  +
Sbjct: 58  GVGLAAPQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDEN 117

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               V R   +T++  D +     +   G  A   QHE+DHLNGI+F D++
Sbjct: 118 IPGLVHRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYI 168


>gi|325567244|ref|ZP_08143911.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
 gi|325158677|gb|EGC70823.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
          Length = 187

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 26/165 (15%)

Query: 11  DPILRRVSRPIE--------KINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR V++ +          +  ++M  ++N  + + + +     G+GLAA Q+ +  R
Sbjct: 12  NPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQLDISKR 71

Query: 58  LVVIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKRS 107
           +  + +      K       V  NPKI++ S   +   EG  CLS+    P Y   V R 
Sbjct: 72  ITAVLVPSSDPEKAEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGY---VVRH 128

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           A IT+ Y D N + + +      A  +QHE+DHLNG++F +H+++
Sbjct: 129 ARITISYYDINGKKKKVRLKNYPAIVIQHEIDHLNGVMFYNHINQ 173


>gi|289164094|ref|YP_003454232.1| polypeptide deformylase [Legionella longbeachae NSW150]
 gi|288857267|emb|CBJ11094.1| putative polypeptide deformylase [Legionella longbeachae NSW150]
          Length = 222

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 15  RRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKN- 71
           + V  P+ + + D++  + + L+ +    G+GLAA Q+    R++ I + + A   R N 
Sbjct: 43  QEVRFPLSQADKDLIAAMSSKLQKL---GGVGLAAPQVNFPRRIIAIYIPEEAALLRDNI 99

Query: 72  ----PM-VFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
               PM + INP            DF    EGC S+      V R   I V Y D   Q 
Sbjct: 100 KSFYPMHIMINPSYTPVEGSAIQHDF----EGCYSVASKSGKVPRYEQINVSYYDELGQF 155

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                +G  +  LQHE+DHLNG L ID   RL  D +   + +++ LR
Sbjct: 156 HRQTEEGFYSRVLQHEIDHLNGFLIID---RLTPDCVQGSVEEMMTLR 200


>gi|116872445|ref|YP_849226.1| peptide deformylase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123466166|sp|A0AHG3|DEF_LISW6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116741323|emb|CAK20445.1| polypeptide deformylase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 183

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 22/160 (13%)

Query: 12  PILRRVSRPI--------EKINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYRL 58
           P LR V+  +        +K+  D++  +    D  L   Y    G+G+AA Q+ V  R+
Sbjct: 13  PALREVASEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQLAVTKRI 72

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAFITV 112
           + I + D   R    V  NPKI + S   +     EGCLS+    P Y   V RS  +T+
Sbjct: 73  LAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTI 129

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              D N     +      A  +QHE+DHLNGI+F DH+++
Sbjct: 130 DAFDENGIPLKLRFKDYPAIVVQHEIDHLNGIMFYDHINK 169


>gi|227517325|ref|ZP_03947374.1| peptide deformylase [Enterococcus faecalis TX0104]
 gi|227075195|gb|EEI13158.1| peptide deformylase [Enterococcus faecalis TX0104]
          Length = 187

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 11  DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR V+  +         ++  D++  + N  + + + +     G+GLAA Q+ +  R
Sbjct: 12  NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110
           ++ + +  +    + P    V  NPKI++ S  D  + + EGCLS+  D    V R   I
Sbjct: 72  IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y D + +   +      A  +QHE+DH+NGI+F DH+++
Sbjct: 132 TVSYFDMDGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173


>gi|217073027|gb|ACJ84873.1| unknown [Medicago truncatula]
          Length = 241

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 17/129 (13%)

Query: 11  DPILRRVSR---PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH- 66
           DP+L   ++   P E ++  +  +ID+M+ VM    G+GLAA QIGV  R++V++  +  
Sbjct: 86  DPVLHEPAQEVDPSEIMSDKVQKIIDDMIRVMRKAPGVGLAAPQIGVSSRIIVLEDTEEF 145

Query: 67  ----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                     A  ++P   +V +NPK+ + S   +++ EGCLS+  +RA V+R   + V 
Sbjct: 146 ISYAPKEVLKAQDRHPFDLLVILNPKLKSTSKRTALFFEGCLSVDGFRAVVERHLDVEVT 205

Query: 114 YMDCNAQHQ 122
            +D N    
Sbjct: 206 GLDRNGDQS 214


>gi|302340674|ref|YP_003805880.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293]
 gi|301637859|gb|ADK83286.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293]
          Length = 175

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 8/120 (6%)

Query: 32  IDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV 89
           +   LE   +  G G  +AA QIG+  R++ +    H   K   +F NP I + S++  +
Sbjct: 35  LQKALEAFRAEKGFGRAIAAPQIGISKRVIAL----HLDGKTFSIF-NPVITSHSEETFL 89

Query: 90  YQEGCLSIPDYRADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFID 148
             + C+S PD    V+R   I++ Y D    +H+    D  L+  LQHE+DHL+GIL ID
Sbjct: 90  LWDDCMSFPDLLVKVRRYTSISIVYQDALGREHRWEKPDRSLSELLQHEIDHLDGILAID 149


>gi|225867820|ref|YP_002743768.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus]
 gi|259645185|sp|C0MFA6|DEF_STRS7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225701096|emb|CAW97934.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus]
          Length = 204

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 25/169 (14%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVM-YSTD-----------GIGLAAVQIGVLYR 57
           +P LR V++ +E  ++ D + L + M++ + +S D           G+GLAA QI V  R
Sbjct: 24  NPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQIDVSKR 83

Query: 58  LVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY-RADVK 105
           ++ + + +      NP         V  NPKI++ S  D      EGCLS+       V 
Sbjct: 84  IIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRVVEGYVV 143

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           R A +TV Y D + +   I   G  A  +QHE+DH+NG+LF D ++  K
Sbjct: 144 RHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKK 192


>gi|78776817|ref|YP_393132.1| formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251]
 gi|78497357|gb|ABB43897.1| Formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251]
          Length = 283

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K +V +P P   + +  +   N +I +LI+++ + + +     LAA QIG  + +VV+  
Sbjct: 22  KEIVTYPTPPSVQYATDVRVFNEEIESLIEDLKDTIKANSLEALAAFQIGSYFNIVVVA- 80

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           QD       +  INP+II      +  ++     P+  A+V R   I++ Y D   Q   
Sbjct: 81  QDGGEF---LELINPRIINPHGRVTTIEKTAY-FPNLSAEVTRYETISLVYQDRELQQHS 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           + ADG  +  LQ ++D+  G  F++ L+++++ +  KK+
Sbjct: 137 LKADGAFSILLQRKVDYTFGSTFLNKLNKVEKKLFQKKL 175


>gi|259046789|ref|ZP_05737190.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
 gi|259036557|gb|EEW37812.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
          Length = 186

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 18/175 (10%)

Query: 4   KPLVIFPDPILR-RVSRPIEKINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V+   P LR R  +    ++ +   L   MLE ++++             G+GLAA 
Sbjct: 5   KDIVLEGHPALRKRAEKLTFPLSPEHQELAKEMLEFLHNSQNPEIAEKYGLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           Q+G   +++ + +      +  +  V+INP+I+  S   +  +  EGCLS+  +    V 
Sbjct: 65  QLGKSIQMIALLVPGFEEEEAILDEVWINPRIMRESVKKACLKDGEGCLSVNREVPGIVL 124

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           R   ITV+Y D N    +   +   A  +QHE+DHLNG++F DH+++ +   I K
Sbjct: 125 RPERITVKYQDVNGDEFVRTLNDYEAIVVQHEIDHLNGVMFYDHINQTQPMYIPK 179


>gi|168483572|ref|ZP_02708524.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00]
 gi|172043063|gb|EDT51109.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00]
          Length = 136

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP +++F   +   +EGCLS+   R+  
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR   I V Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYETIRVAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|326511637|dbj|BAJ91963.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326514272|dbj|BAJ92286.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 121

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 72  PMVF----INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
           P++F    INPK+   S   + + EGCLS+  YRA V+R   + V  +D N +   + A 
Sbjct: 14  PLIFLWVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLDVEVSGLDRNGRPMKVEAS 73

Query: 128 GLLATCLQHELDHLNGILFIDHL 150
           G  A  LQHE DHL G L++D +
Sbjct: 74  GWQARILQHECDHLEGTLYVDKM 96


>gi|329571126|gb|EGG52832.1| peptide deformylase [Enterococcus faecalis TX1467]
          Length = 187

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 20/162 (12%)

Query: 11  DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR V+  +         ++  D++  + N  + + + +     G+GLAA Q+ +  R
Sbjct: 12  NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110
           ++ + +  +    + P    V  NPKI++ S  D  + + EGCLS+  D    V R   I
Sbjct: 72  IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHVKI 131

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y D   +   +      A  +QHE+DH+NGI+F DH+++
Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173


>gi|172058021|ref|YP_001814481.1| peptide deformylase [Exiguobacterium sibiricum 255-15]
 gi|171990542|gb|ACB61464.1| peptide deformylase [Exiguobacterium sibiricum 255-15]
          Length = 179

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 13/146 (8%)

Query: 17  VSRPIEKINSDIMNLI---------DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           V+ P+ + + + M L+         D + E      GIGLAA QIGV  R+  I LQD  
Sbjct: 22  VTFPLSEEDKETMRLMMEYLANSQDDELAEKYDLRSGIGLAAPQIGVNKRMFAIRLQDGD 81

Query: 68  HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQII 124
                 ++ NPKI++ S    +    EGCLS+  +    V R   IT+  +D N     +
Sbjct: 82  DILEFGIY-NPKIVSHSVEQTYLAGGEGCLSVDREVEGHVPRYMRITLSGIDHNGNPVKL 140

Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150
              GL A   QHE DHL+GI+F D +
Sbjct: 141 RLKGLKAVVCQHEYDHLDGIMFYDRI 166


>gi|329667535|gb|AEB93483.1| peptide deformylase [Lactobacillus johnsonii DPC 6026]
          Length = 181

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P+LR+V++P+   ++ +   L D+M++ + ++             G+GLAA Q+G   +
Sbjct: 9   NPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQ 68

Query: 58  LVVIDL-QDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSI-PDYRADVKRSAFITVR 113
           +  + +  D        VF+NPKI++ S   +     EGCLS+  D    V R   + +R
Sbjct: 69  MAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRPDKLKIR 128

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 129 YYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 167


>gi|42518919|ref|NP_964849.1| peptide deformylase [Lactobacillus johnsonii NCC 533]
 gi|227889778|ref|ZP_04007583.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
 gi|268319683|ref|YP_003293339.1| peptide deformylase [Lactobacillus johnsonii FI9785]
 gi|81703847|sp|Q74JW2|DEF_LACJO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|41583205|gb|AAS08815.1| peptide deformylase [Lactobacillus johnsonii NCC 533]
 gi|227849642|gb|EEJ59728.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
 gi|262398058|emb|CAX67072.1| peptide deformylase [Lactobacillus johnsonii FI9785]
          Length = 184

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P+LR+V++P+   ++ +   L D+M++ + ++             G+GLAA Q+G   +
Sbjct: 12  NPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQ 71

Query: 58  LVVIDL-QDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSI-PDYRADVKRSAFITVR 113
           +  + +  D        VF+NPKI++ S   +     EGCLS+  D    V R   + +R
Sbjct: 72  MAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRPDKLKIR 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 132 YYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|241667120|ref|ZP_04754698.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254875674|ref|ZP_05248384.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254841695|gb|EET20109.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 201

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 14/149 (9%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I +S+I N+I  M E M   +GIGLAA QIG  +++ +I+  D ++ 
Sbjct: 13  NQVLYQKCKPVTDIQSSEIQNIIAEMREKM-QGNGIGLAANQIGYPHQIFMIEF-DSSNA 70

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           + P+        VFINPKI   S+    +  GCLS    +   K + +  + Y   N   
Sbjct: 71  RYPLNFDSVPFQVFINPKITKASEKRVGFWHGCLSALGGKRG-KLATYKEIEYEAYNQHG 129

Query: 122 QIIYA--DGLLATCLQHELDHLNGILFID 148
           + I    D + A   QHE +HL G +++D
Sbjct: 130 KKITGKLDSIAAVIFQHEFNHLLGSVYVD 158


>gi|33357292|pdb|1LM4|A Chain A, Structure Of Peptide Deformylase From Staphylococcus
           Aureus At 1.45 A
 gi|33357293|pdb|1LM4|B Chain B, Structure Of Peptide Deformylase From Staphylococcus
           Aureus At 1.45 A
          Length = 194

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           G+GLAA QI +  R++ + + D    K+   + +NPKI++ S  + +    EG LS+ D 
Sbjct: 69  GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDN 128

Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            A  V R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 129 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 181


>gi|51247225|pdb|1Q1Y|A Chain A, Crystal Structures Of Peptide Deformylase From
           Staphylococcus Aureus Complexed With Actinonin
          Length = 191

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           G+GLAA QI +  R++ + + D    K+   + +NPKI++ S  + +    EG LS+ D 
Sbjct: 58  GVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDN 117

Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            A  V R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 118 VAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|194323397|ref|ZP_03057174.1| polypeptide deformylase [Francisella tularensis subsp. novicida
           FTE]
 gi|194322252|gb|EDX19733.1| polypeptide deformylase [Francisella tularensis subsp. novicida
           FTE]
          Length = 186

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 16/142 (11%)

Query: 19  RPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM---- 73
           +P+  I S +I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ + P     
Sbjct: 6   KPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNARYPFSFDS 63

Query: 74  ----VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQHQIIYA-- 126
               VFINPKI   S     +  GCLS + + R   K + +  + Y   N   + I    
Sbjct: 64  VPYQVFINPKITKASKQRVSFWHGCLSALGEKRG--KLATYKEIEYEAYNQHGEKITGKL 121

Query: 127 DGLLATCLQHELDHLNGILFID 148
           D + A   QHE +HL G +++D
Sbjct: 122 DSIAAVIFQHEFNHLLGSVYVD 143


>gi|309775748|ref|ZP_07670744.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916511|gb|EFP62255.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 184

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 17/119 (14%)

Query: 44  GIGLAAVQIGVLYRLVVI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCL 95
            +G+AA+Q+GV  R++ +      D+ ++A        +NP+II+ S   +  +  EGCL
Sbjct: 59  AVGIAAIQLGVAKRMLAVVVPNDEDIDEYA-------LVNPRIISESVQRAYLKNGEGCL 111

Query: 96  SIP-DYRADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           S+  ++   V R+A ITV+  D   + +I I A   LA  LQHE+DH +G LF D +++
Sbjct: 112 SVEKEHEGIVPRAARITVKGYDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170


>gi|148992559|ref|ZP_01822227.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|149003222|ref|ZP_01828118.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|149011789|ref|ZP_01832985.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|168488787|ref|ZP_02712986.1| polypeptide deformylase [Streptococcus pneumoniae SP195]
 gi|237650234|ref|ZP_04524486.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974]
 gi|237820884|ref|ZP_04596729.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758682|gb|EDK65679.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|147764220|gb|EDK71152.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|147928576|gb|EDK79590.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|183572696|gb|EDT93224.1| polypeptide deformylase [Streptococcus pneumoniae SP195]
 gi|332072344|gb|EGI82827.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA17570]
          Length = 136

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP +++F   +   +EGCLS+   R+  
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR   I V Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYETIRVAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|116334013|ref|YP_795540.1| peptide deformylase [Lactobacillus brevis ATCC 367]
 gi|122269303|sp|Q03QL3|DEF_LACBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116099360|gb|ABJ64509.1| peptide deformylase [Lactobacillus brevis ATCC 367]
          Length = 186

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 44  GIGLAAVQIGV---LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI- 97
           G+GLAA Q+GV   +  ++V  +++        V INP II+ S       EG  CLS+ 
Sbjct: 58  GVGLAAPQVGVSKKMASVLVPPVEEDGKSPFTDVIINPVIISESVQAGALTEGEGCLSVD 117

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            D    V R   IT+RY D N +   +      A   QHE+DHL+G LF DH+++
Sbjct: 118 KDVPGFVPRHDRITLRYYDVNGEKHQVRLKNYPAIVCQHEIDHLHGTLFYDHINK 172


>gi|224476324|ref|YP_002633930.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420931|emb|CAL27745.1| putative polypeptide deformylase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 162

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV      LR+ +  ++K +  +  L+ ++ + +Y T+   L+A QIGV  +  +
Sbjct: 1   MAVKQLVPANSSKLRKPAAEVKKFDDSLKKLLLDIEDTLYDTEASALSAPQIGVSLQAAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +  INP II  SD+     EG +S PD    V RS  I V+  D +  
Sbjct: 61  IDME----AEGLLQLINPTIIRQSDETVTDLEGSISFPDVFGTVTRSQMIVVQSYDLHGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A   +A  + H +D L GI F + + +
Sbjct: 117 KVELTAYDDVARMILHIVDQLKGIPFTEKMEK 148


>gi|125717323|ref|YP_001034456.1| peptide deformylase [Streptococcus sanguinis SK36]
 gi|125497240|gb|ABN43906.1| Formylmethionine deformylase, putative [Streptococcus sanguinis
           SK36]
          Length = 136

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           IGLAA  IGV  R+++       +   P+V  NP +++ S  +   +EGCLS+   R   
Sbjct: 42  IGLAANMIGVRKRVIIF-----LYGLVPVVMFNPVLLSKSGPYQT-EEGCLSLVGSRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   ITV Y+D N Q Q +   GL A   QHELDHL GI+
Sbjct: 95  QRYQEITVDYLDKNWQQQTMTLKGLPAQICQHELDHLEGII 135


>gi|293366921|ref|ZP_06613596.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291318896|gb|EFE59267.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 180

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99
           G+GLAA QI    R++ + L D  + K+   + +NPKI+++S  + +    EGCLS+  +
Sbjct: 55  GVGLAAPQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDEN 114

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               V R   +T++  D +     +   G  A   QHE+DHLNGI+F D++
Sbjct: 115 IPGLVHRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYI 165


>gi|325686575|gb|EGD28601.1| peptide deformylase [Streptococcus sanguinis SK72]
          Length = 210

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ + + +      NP         +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|323350520|ref|ZP_08086182.1| peptide deformylase [Streptococcus sanguinis VMC66]
 gi|322123202|gb|EFX94887.1| peptide deformylase [Streptococcus sanguinis VMC66]
          Length = 210

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP---------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  RL+ + + +    +            +  NPKI+  S 
Sbjct: 67  MAEKMGLRGGVGLAAPQLDISKRLIAVLVPNPEDEEGSPPKEAYSLQTLMYNPKIVAHSV 126

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+D
Sbjct: 127 QDAALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEID 183

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 184 HINGIMFYDRINE 196


>gi|27467707|ref|NP_764344.1| peptide deformylase [Staphylococcus epidermidis ATCC 12228]
 gi|57866596|ref|YP_188262.1| peptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251810544|ref|ZP_04825017.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876551|ref|ZP_06285416.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|32129485|sp|Q8CPN4|DEF_STAES RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81674995|sp|Q5HQ78|DEF_STAEQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|27315251|gb|AAO04386.1|AE016746_176 formylmethionine deformylase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637254|gb|AAW54042.1| peptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251805955|gb|EES58612.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294639|gb|EFA87168.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|329732863|gb|EGG69209.1| peptide deformylase [Staphylococcus epidermidis VCU144]
 gi|329734227|gb|EGG70543.1| peptide deformylase [Staphylococcus epidermidis VCU028]
 gi|329735535|gb|EGG71823.1| peptide deformylase [Staphylococcus epidermidis VCU045]
          Length = 183

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99
           G+GLAA QI    R++ + L D  + K+   + +NPKI+++S  + +    EGCLS+  +
Sbjct: 58  GVGLAAPQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDEN 117

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               V R   +T++  D +     +   G  A   QHE+DHLNGI+F D++
Sbjct: 118 IPGLVHRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYI 168


>gi|330470685|ref|YP_004408428.1| XRE family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328813656|gb|AEB47828.1| XRE family transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 504

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 11/148 (7%)

Query: 13  ILRRVSRPIE--KINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIGVLYRLVVIDL 63
           +LR+ +RP +  +       +ID + + +   D       G+G+AA Q+ +     VI  
Sbjct: 339 LLRQPARPFDLPREARAAREVIDRLTDALARLDELHPFAKGVGIAAPQLEIGRAAAVIRP 398

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D      P+V +NP+++  + D     EGCLS  D+R  V R   + V +   + +  I
Sbjct: 399 PDRT--AEPLVLLNPRVVDAAPDTDEQYEGCLSFFDHRGLVPRPLRLDVEHAQLDGRRVI 456

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +A  + HE+DHL G L++D ++
Sbjct: 457 TSFEFGMARLVAHEIDHLEGRLYVDRMA 484


>gi|227529038|ref|ZP_03959087.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
 gi|227351050|gb|EEJ41341.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
          Length = 190

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 20/161 (12%)

Query: 11  DPILRR----VSRPIEKINSDIMNLIDNMLEVMYSTD---------GIGLAAVQIGVLYR 57
           DP+LR+    V+ P+ + + +        LEV    +         G+GLAA Q+G+  +
Sbjct: 15  DPVLRKRAAKVTFPLSEEDQEFAKRAMEYLEVSQDPELCKKYKLRAGVGLAAPQVGISKQ 74

Query: 58  LVVIDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFI 110
           +  + +    +D        V INP I++ S  +    EG  CLS+  D    V R   I
Sbjct: 75  MAAVLVPSLNEDDDQPSFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRI 134

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           T+RY D   +   +      A   QHE+DHL+G+LF DH++
Sbjct: 135 TLRYQDVKGETHQLRLKNYPAIVCQHEIDHLHGVLFYDHIN 175


>gi|15672542|ref|NP_266716.1| peptide deformylase [Lactococcus lactis subsp. lactis Il1403]
 gi|281491026|ref|YP_003353006.1| peptide deformylase [Lactococcus lactis subsp. lactis KF147]
 gi|12723447|gb|AAK04658.1|AE006290_3 polypeptide deformylase [Lactococcus lactis subsp. lactis Il1403]
 gi|281374784|gb|ADA64304.1| Peptide deformylase [Lactococcus lactis subsp. lactis KF147]
 gi|326406061|gb|ADZ63132.1| peptide deformylase [Lactococcus lactis subsp. lactis CV56]
          Length = 211

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 22/136 (16%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI------DLQDHAHRKNPM-------VFINPKII 81
           M E M    G+GLAA Q+G+L +++ +      ++ +  +   P        +  N K++
Sbjct: 64  MAEKMGLRGGVGLAANQLGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVV 123

Query: 82  TFS-DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           + S  D +V   EGCLS+    P Y   V R A +TV Y +   + + I      A C+Q
Sbjct: 124 SHSVQDAAVEGGEGCLSVDREVPGY---VVRHARVTVEYYNKEGEKKKIRLKDFPAICVQ 180

Query: 136 HELDHLNGILFIDHLS 151
           HE+DH NG++F DH++
Sbjct: 181 HEIDHTNGVMFYDHIN 196


>gi|301775659|ref|XP_002923264.1| PREDICTED: peptide deformylase, mitochondrial-like [Ailuropoda
           melanoleuca]
 gi|281349917|gb|EFB25501.1| hypothetical protein PANDA_012363 [Ailuropoda melanoleuca]
          Length = 141

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 14/120 (11%)

Query: 45  IGLAAVQIGVLYRLVVIDLQD-----------HAHRKNPM---VFINPKIITFSDDFSVY 90
           +GL+A Q+GV  +++ ++  +            A +  P    VF+NP +         +
Sbjct: 7   VGLSAPQLGVPLQVLALEFPEALFRACAPGLREARQMEPFPLRVFVNPSLRVLDSRLVTF 66

Query: 91  QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            EGC S+  + A V R   + +  +D   +  +  A G  A  +QHE+DHL G LFID +
Sbjct: 67  PEGCESVAGFLACVPRFQAVQISGLDPKGEQVVWQASGWAARIIQHEMDHLQGCLFIDKM 126


>gi|169404548|pdb|2OS1|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E.
           Faecalis And S. Pyogenes
          Length = 188

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 20/162 (12%)

Query: 11  DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR V+  +         ++  D++  + N  + + + +     G+GLAA Q+ +  R
Sbjct: 12  NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110
           ++ + +  +    + P    V  NPKI++ S  D  + + EGCLS+  D    V R   I
Sbjct: 72  IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y D   +   +      A  +QHE+DH+NGI+F DH+++
Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173


>gi|157150181|ref|YP_001449640.1| peptide deformylase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|189083079|sp|A8AV30|DEF_STRGC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157074975|gb|ABV09658.1| polypeptide deformylase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 204

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 18/143 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--DHAHRKNPM-------VFINPKIITFS- 84
           M E +    G+GLAA Q+ +  R++ + L   +  +  +P        V  NPKI+  S 
Sbjct: 61  MAEKLGLRGGVGLAAPQLDISRRIIAVLLPNPEDENGNSPQEAYALKEVMYNPKIVAHSV 120

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D N +   +   G  A  +QHE+D
Sbjct: 121 QDAALADGEGCLSVDRDVPGY---VVRHARVTVDYFDKNGEKHRVKLKGYKAIVVQHEID 177

Query: 140 HLNGILFIDHLSRLKRDMITKKM 162
           H+NGI+F D ++      I + M
Sbjct: 178 HINGIMFYDRINETDPFAIKEGM 200


>gi|328868869|gb|EGG17247.1| hypothetical protein DFA_08237 [Dictyostelium fasciculatum]
          Length = 201

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           + P+V   PK IT ++   V+ E CLS+P Y   V R+    + + D     + I ADGL
Sbjct: 91  QTPLV-TTPKKITANNTIDVW-ESCLSVPSYYGRVTRARKCIINFWDITGTPRSIEADGL 148

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMI 158
           ++ CLQHE DHL G +F + L     D++
Sbjct: 149 ISACLQHENDHLLGRVFFERLQNSVNDLV 177


>gi|324990225|gb|EGC22163.1| peptide deformylase [Streptococcus sanguinis SK353]
          Length = 136

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 9/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           + +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V
Sbjct: 12  LQQPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVV 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP + + S  +   +EGCLS+   R   +R   ITV Y+D N Q + +   GL A   
Sbjct: 67  MFNPVLRSKSGPYQT-EEGCLSLTGSRP-TQRYQEITVDYLDKNWQQRTMTLKGLPAQIC 124

Query: 135 QHELDHLNGIL 145
           QHELDHL GIL
Sbjct: 125 QHELDHLEGIL 135


>gi|313900498|ref|ZP_07833991.1| peptide deformylase [Clostridium sp. HGF2]
 gi|312954560|gb|EFR36235.1| peptide deformylase [Clostridium sp. HGF2]
          Length = 137

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 10/140 (7%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQD 65
           I  D  L  +SR  E    D +  + ++ + +  ++   +G+AA  IGVL R++V   QD
Sbjct: 5   IVKDTFL--LSRRCEAATLDDLQTVQDLQDTLQAHADHCVGMAANMIGVLKRIIV--FQD 60

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                + +  +NP II   D     +EGCL     +  + R   I V YMDC  + +I  
Sbjct: 61  GG---SYVSMLNPVIIKTGDKRYTAEEGCLCHSTQKKAL-RYEKIKVSYMDCCGKKKIKT 116

Query: 126 ADGLLATCLQHELDHLNGIL 145
            +G  A  +QHELDH +GIL
Sbjct: 117 YEGFCAQIIQHELDHCDGIL 136


>gi|257420477|ref|ZP_05597467.1| polypeptide deformylase [Enterococcus faecalis X98]
 gi|257162301|gb|EEU92261.1| polypeptide deformylase [Enterococcus faecalis X98]
 gi|315154772|gb|EFT98788.1| peptide deformylase [Enterococcus faecalis TX0043]
          Length = 187

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 11  DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR V+  +         ++  D++  + N  + + + +     G+GLAA Q+ +  R
Sbjct: 12  NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDL--QDHAHRKNPM--VFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110
           ++ + +   D  + K  +  V  NPKI++ S  D  + + EGCLS+  D    V R   I
Sbjct: 72  IIAVHVPSNDPENEKPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y D   +   +      A  +QHE+DH+NGI+F DH+++
Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173


>gi|29377524|ref|NP_816678.1| peptide deformylase [Enterococcus faecalis V583]
 gi|227554489|ref|ZP_03984536.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|229547504|ref|ZP_04436229.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|255970735|ref|ZP_05421321.1| peptide deformylase [Enterococcus faecalis T1]
 gi|255974309|ref|ZP_05424895.1| peptide deformylase [Enterococcus faecalis T2]
 gi|256618174|ref|ZP_05475020.1| peptide deformylase [Enterococcus faecalis ATCC 4200]
 gi|256761103|ref|ZP_05501683.1| peptide deformylase [Enterococcus faecalis T3]
 gi|256854744|ref|ZP_05560108.1| polypeptide deformylase [Enterococcus faecalis T8]
 gi|256958348|ref|ZP_05562519.1| peptide deformylase [Enterococcus faecalis DS5]
 gi|256960417|ref|ZP_05564588.1| peptide deformylase [Enterococcus faecalis Merz96]
 gi|256962908|ref|ZP_05567079.1| peptide deformylase [Enterococcus faecalis HIP11704]
 gi|257078342|ref|ZP_05572703.1| peptide deformylase [Enterococcus faecalis JH1]
 gi|257080527|ref|ZP_05574888.1| peptide deformylase [Enterococcus faecalis E1Sol]
 gi|257083262|ref|ZP_05577623.1| peptide deformylase [Enterococcus faecalis Fly1]
 gi|257088182|ref|ZP_05582543.1| peptide deformylase [Enterococcus faecalis D6]
 gi|257417200|ref|ZP_05594194.1| peptide deformylase [Enterococcus faecalis AR01/DG]
 gi|257417917|ref|ZP_05594911.1| peptide deformylase [Enterococcus faecalis T11]
 gi|293383918|ref|ZP_06629820.1| peptide deformylase [Enterococcus faecalis R712]
 gi|293388312|ref|ZP_06632826.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294780198|ref|ZP_06745570.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|300861505|ref|ZP_07107589.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|307270427|ref|ZP_07551728.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|307273932|ref|ZP_07555144.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|307276707|ref|ZP_07557824.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|307278203|ref|ZP_07559285.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|307286413|ref|ZP_07566519.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|307292087|ref|ZP_07571954.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|312901914|ref|ZP_07761177.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|312906741|ref|ZP_07765741.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|312910721|ref|ZP_07769560.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|312953167|ref|ZP_07772014.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|39930870|sp|Q82ZJ0|DEF_ENTFA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|29344991|gb|AAO82748.1| polypeptide deformylase [Enterococcus faecalis V583]
 gi|227176399|gb|EEI57371.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|229307346|gb|EEN73333.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|255961753|gb|EET94229.1| peptide deformylase [Enterococcus faecalis T1]
 gi|255967181|gb|EET97803.1| peptide deformylase [Enterococcus faecalis T2]
 gi|256597701|gb|EEU16877.1| peptide deformylase [Enterococcus faecalis ATCC 4200]
 gi|256682354|gb|EEU22049.1| peptide deformylase [Enterococcus faecalis T3]
 gi|256710304|gb|EEU25348.1| polypeptide deformylase [Enterococcus faecalis T8]
 gi|256948844|gb|EEU65476.1| peptide deformylase [Enterococcus faecalis DS5]
 gi|256950913|gb|EEU67545.1| peptide deformylase [Enterococcus faecalis Merz96]
 gi|256953404|gb|EEU70036.1| peptide deformylase [Enterococcus faecalis HIP11704]
 gi|256986372|gb|EEU73674.1| peptide deformylase [Enterococcus faecalis JH1]
 gi|256988557|gb|EEU75859.1| peptide deformylase [Enterococcus faecalis E1Sol]
 gi|256991292|gb|EEU78594.1| peptide deformylase [Enterococcus faecalis Fly1]
 gi|256996212|gb|EEU83514.1| peptide deformylase [Enterococcus faecalis D6]
 gi|257159028|gb|EEU88988.1| peptide deformylase [Enterococcus faecalis ARO1/DG]
 gi|257159745|gb|EEU89705.1| peptide deformylase [Enterococcus faecalis T11]
 gi|291078745|gb|EFE16109.1| peptide deformylase [Enterococcus faecalis R712]
 gi|291082322|gb|EFE19285.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294452741|gb|EFG21171.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|295114395|emb|CBL33032.1| peptide deformylase [Enterococcus sp. 7L76]
 gi|300848966|gb|EFK76719.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|306496869|gb|EFM66419.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|306502426|gb|EFM71699.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|306505192|gb|EFM74380.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|306506606|gb|EFM75759.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|306509411|gb|EFM78469.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|306513205|gb|EFM81836.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|310627389|gb|EFQ10672.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|310628910|gb|EFQ12193.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|311288984|gb|EFQ67540.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|311290981|gb|EFQ69537.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|315027683|gb|EFT39615.1| peptide deformylase [Enterococcus faecalis TX2137]
 gi|315028233|gb|EFT40165.1| peptide deformylase [Enterococcus faecalis TX4000]
 gi|315031247|gb|EFT43179.1| peptide deformylase [Enterococcus faecalis TX0017]
 gi|315036534|gb|EFT48466.1| peptide deformylase [Enterococcus faecalis TX0027]
 gi|315143298|gb|EFT87314.1| peptide deformylase [Enterococcus faecalis TX2141]
 gi|315149069|gb|EFT93085.1| peptide deformylase [Enterococcus faecalis TX0012]
 gi|315152916|gb|EFT96932.1| peptide deformylase [Enterococcus faecalis TX0031]
 gi|315157489|gb|EFU01506.1| peptide deformylase [Enterococcus faecalis TX0312]
 gi|315164500|gb|EFU08517.1| peptide deformylase [Enterococcus faecalis TX1302]
 gi|315167177|gb|EFU11194.1| peptide deformylase [Enterococcus faecalis TX1341]
 gi|315171029|gb|EFU15046.1| peptide deformylase [Enterococcus faecalis TX1342]
 gi|315173457|gb|EFU17474.1| peptide deformylase [Enterococcus faecalis TX1346]
 gi|315573357|gb|EFU85548.1| peptide deformylase [Enterococcus faecalis TX0309B]
 gi|315581211|gb|EFU93402.1| peptide deformylase [Enterococcus faecalis TX0309A]
 gi|323479000|gb|ADX78439.1| peptide deformylase [Enterococcus faecalis 62]
 gi|327536189|gb|AEA95023.1| peptide deformylase [Enterococcus faecalis OG1RF]
          Length = 187

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 20/162 (12%)

Query: 11  DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR V+  +         ++  D++  + N  + + + +     G+GLAA Q+ +  R
Sbjct: 12  NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110
           ++ + +  +    + P    V  NPKI++ S  D  + + EGCLS+  D    V R   I
Sbjct: 72  IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y D   +   +      A  +QHE+DH+NGI+F DH+++
Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173


>gi|195978856|ref|YP_002124100.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|238689838|sp|B4U576|DEF_STREM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|195975561|gb|ACG63087.1| peptide deformylase Pdf [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 204

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 25/166 (15%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVM-YSTD-----------GIGLAAVQIGVLYR 57
           +P LR V++ +E  ++ D + L + M++ + +S D           G+GLAA QI V  R
Sbjct: 24  NPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQIDVSKR 83

Query: 58  LVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY-RADVK 105
           ++ + + +      NP         V  NPKI++ S  D      EGCLS+       V 
Sbjct: 84  IIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRVVEGYVV 143

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R A +TV Y D + +   I   G  A  +QHE+DH+NG+LF D ++
Sbjct: 144 RHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189


>gi|315148893|gb|EFT92909.1| peptide deformylase [Enterococcus faecalis TX4244]
          Length = 187

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 20/162 (12%)

Query: 11  DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR V+  +         ++  D++  + N  + + + +     G+GLAA Q+ +  R
Sbjct: 12  NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLAAPQLDISKR 71

Query: 58  LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110
           ++ + +  +    + P    V  NPKI++ S  D  + + EGCLS+  D    V R   I
Sbjct: 72  IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDWDVPGYVVRHNKI 131

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y D   +   +      A  +QHE+DH+NGI+F DH+++
Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173


>gi|222150958|ref|YP_002560111.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402]
 gi|254767593|sp|B9EB04|DEF_MACCJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|222120080|dbj|BAH17415.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402]
          Length = 184

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 21/160 (13%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRL 58
           P LR  +  +   ++++   LID+MLE +  +             G+G+AA Q+    R+
Sbjct: 13  PTLRAKAEEVPLPLSTEDRQLIDDMLEFLKMSQDEEQSRKYQLRSGVGIAAPQLNHKKRM 72

Query: 59  VVIDLQDHAHRKNPMV---FINPKIITFSDDFSV--YQEGCLSIPDYRAD-VKRSAFITV 112
           +VI   D   +K   V    INPKII+ S + S     EGCLS+ +     V R A ITV
Sbjct: 73  LVIHFYDE--KKGDYVTHQLINPKIISHSVEKSYLPTGEGCLSVDEAVPGIVHRYARITV 130

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    + +   +      A   QHE+DHLNG++F DH+ +
Sbjct: 131 KAYTPDGEEVKLRLKDFSAIVAQHEIDHLNGVMFYDHIDK 170


>gi|221066139|ref|ZP_03542244.1| peptide deformylase [Comamonas testosteroni KF-1]
 gi|220711162|gb|EED66530.1| peptide deformylase [Comamonas testosteroni KF-1]
          Length = 179

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 11/145 (7%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R+++P+ + ++D ++L+   L   M++ +G GLAA QIG   ++VV    +   R
Sbjct: 11  DPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEPNPR 70

Query: 70  --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
               P+V     INP I    ++  +  EGCLS+P  RA V R  +  VRY   +     
Sbjct: 71  YPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPR--WSKVRYTGFDLYGDP 128

Query: 124 I--YADGLLATCLQHELDHLNGILF 146
           I    DG  A  +QHE DHL G L+
Sbjct: 129 IDRTVDGFHARVVQHECDHLWGKLY 153


>gi|13637693|sp|Q48661|DEF_LACLA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
          Length = 196

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 22/136 (16%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI------DLQDHAHRKNPM-------VFINPKII 81
           M E M    G+GLAA Q+G+L +++ +      ++ +  +   P        +  N K++
Sbjct: 49  MAEKMGLRGGVGLAANQLGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVV 108

Query: 82  TFS-DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           + S  D +V   EGCLS+    P Y   V R A +TV Y +   + + I      A C+Q
Sbjct: 109 SHSVQDAAVEGGEGCLSVDREVPGY---VVRHARVTVEYYNKEGEKKKIRLKDFPAICVQ 165

Query: 136 HELDHLNGILFIDHLS 151
           HE+DH NG++F DH++
Sbjct: 166 HEIDHTNGVMFYDHIN 181


>gi|327473594|gb|EGF19014.1| peptide deformylase [Streptococcus sanguinis SK408]
          Length = 136

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 9/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           + +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V
Sbjct: 12  LQQPSEQASREDLYLAQDLQDTLQANQENCIGLAANMIGVRKRVIIF-----LYGLVPIV 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP + + S  +   +EGCLS+   R   +R   ITV Y+D N Q Q +   GL A   
Sbjct: 67  MFNPVLRSKSGPYQT-EEGCLSLVGSRP-TQRYQEITVDYLDKNWQQQTMTLKGLPAQIC 124

Query: 135 QHELDHLNGIL 145
           QHELDHL GI+
Sbjct: 125 QHELDHLEGII 135


>gi|290476476|ref|YP_003469381.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
 gi|289175814|emb|CBJ82617.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
          Length = 96

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 5/93 (5%)

Query: 6  LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQ 64
          ++  PD  LR+    +  ++ +I  LID+ML+ MY TD GIGLAA Q+G    +++ID+ 
Sbjct: 6  ILTIPDERLRQKCIDVTHVD-EIQTLIDDMLDTMYDTDNGIGLAAPQVGRKEAVLIIDI- 63

Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97
             +R  PMV +NPKI+   +   V QEGCLSI
Sbjct: 64 -SPNRDQPMVLVNPKIVE-KERRVVNQEGCLSI 94


>gi|225871270|ref|YP_002747217.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047]
 gi|254767601|sp|C0M9E1|DEF_STRE4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225700674|emb|CAW95260.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047]
          Length = 204

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 25/166 (15%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVM-YSTD-----------GIGLAAVQIGVLYR 57
           +P LR V++ +E  ++ D + L + M++ + +S D           G+GLAA QI V  R
Sbjct: 24  NPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQIDVSKR 83

Query: 58  LVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY-RADVK 105
           ++ + + +      NP         V  NPKI++ S  D      EGCLS+       V 
Sbjct: 84  IIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRVVEGYVV 143

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R A +TV Y D + +   I   G  A  +QHE+DH+NG+LF D ++
Sbjct: 144 RHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189


>gi|330798798|ref|XP_003287437.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum]
 gi|325082584|gb|EGC36062.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum]
          Length = 238

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 47/167 (28%)

Query: 30  NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA---HRKN-PMV-FINPKIITFS 84
           ++ID M + M +  G G+AA QIG+  +L + +        H  N P+  F NPK+    
Sbjct: 38  SVIDRMTKEMGNV-GTGIAAPQIGINKQLFLFEFDSQGLPVHCPNFPLTAFFNPKVEIIE 96

Query: 85  DD-------FSVYQ----------------------------------EGCLSIPDYRAD 103
           +D       FS+                                    E CLS+P+  A 
Sbjct: 97  EDVYMPPPGFSITTNKKILNLKRYKKSLQTFERSVPLKQTSNNTMEMYESCLSVPNIFAK 156

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +KR+    + ++D   + ++I A+G++A C QHE DHL G L +D L
Sbjct: 157 IKRAKRCIITFLDITGKERVIDAEGIIAACFQHEYDHLLGRLLVDRL 203


>gi|241896030|ref|ZP_04783326.1| peptide deformylase [Weissella paramesenteroides ATCC 33313]
 gi|241870761|gb|EER74512.1| peptide deformylase [Weissella paramesenteroides ATCC 33313]
          Length = 195

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 34/175 (19%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           D +LR  +  +E  ++ ++     NM+E ++ S D           G+GLAA Q+G+  +
Sbjct: 12  DKVLRERAAKVEFPLSDEVKEASKNMMEYLVVSQDEKENEKYGLRPGVGLAAPQVGISQQ 71

Query: 58  LVVI--------DLQDHAHRKNPMVF----INPKIITFSDDFSVYQ--EGCLSI----PD 99
              I        +LQD     +   F     NP I   S         EGCLS+    P 
Sbjct: 72  FTSILIPSDDVEELQDKKTTDSDYFFKGTIYNPVITRQSVKKGALSMGEGCLSVDNDLPG 131

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           Y   V RS  ITV++ D N   Q +  +G  A   QHE+DHL+G L+ DH+++ +
Sbjct: 132 Y---VARSYRITVKFQDENGDKQELRLEGYPAIVFQHEIDHLHGTLYYDHINKTE 183


>gi|185179123|ref|ZP_02555609.2| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024050|ref|ZP_02569693.2| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518296|ref|ZP_02556113.2| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195867564|ref|ZP_03079567.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|225551606|ref|ZP_03772552.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184208960|gb|EDU06003.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188019083|gb|EDU57123.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188998245|gb|EDU67342.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195660808|gb|EDX54062.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|225379421|gb|EEH01786.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 198

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 20/167 (11%)

Query: 5   PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYST--------DGIGLAA 49
           P  IF  P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA
Sbjct: 18  PQWIFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAA 77

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-VKR 106
            Q+G   R   I   D A +++  + INP II  S + +     EGCLS+ D R+  V R
Sbjct: 78  NQVGWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIR 136

Query: 107 SAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152
           +  + V+  D  ++  I     G++A C+QHE+ HL+  L+ D++++
Sbjct: 137 NKKVHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQ 183


>gi|293376283|ref|ZP_06622524.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325842152|ref|ZP_08167617.1| peptide deformylase [Turicibacter sp. HGF1]
 gi|292645101|gb|EFF63170.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325489718|gb|EGC92076.1| peptide deformylase [Turicibacter sp. HGF1]
          Length = 184

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 43  DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-D 99
           + +GLAA Q+ +  R++ +  +D   +   +   NPKI+++S++ +     EGCLS+  +
Sbjct: 57  ESVGLAAPQLNLDKRIIAVHTEDEKGKLYSLALANPKIVSYSEEITYLPMGEGCLSVDRE 116

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
               V R   ITV   +   +         ++   QHE+DHLNG LFIDH+
Sbjct: 117 VEGFVPRYRRITVEGYNLKGEKIKFRLRDYVSIVFQHEIDHLNGHLFIDHI 167


>gi|262281961|ref|ZP_06059730.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA]
 gi|262262415|gb|EEY81112.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA]
          Length = 204

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 18/143 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E +    G+GLAA Q+ +  R++ + L +      NP         V  NPKI+  S 
Sbjct: 61  MAEKLGLRGGVGLAAPQLDISRRIIAVLLPNPEDENGNPPQDAYALKEVMYNPKIVAHSV 120

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D + +   +   G  A  +QHE+D
Sbjct: 121 QDAALADGEGCLSVDRDVPGY---VVRHARVTVDYFDKDGEKHRVKLKGYKAIVVQHEID 177

Query: 140 HLNGILFIDHLSRLKRDMITKKM 162
           H+NGI+F D ++      I + M
Sbjct: 178 HINGIMFYDRINETDPFAIKEGM 200


>gi|73662866|ref|YP_301647.1| peptide deformylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495381|dbj|BAE18702.1| putative N-formylmethionyl-tRNA deformylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 162

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL +    + K + ++  L+ ++ + MY  +   + A QIGV  ++ +
Sbjct: 1   MTIKQLVTSKHPILNKSIPDVTKFDENLEQLLLDLEDTMYDVEASAICAPQIGVAQKVAM 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++        +  INP+II+ SD      EG +SIP+   +V+RS  I V+  D    
Sbjct: 61  IDME----MDGLLQLINPQIISESDTKVTDLEGSISIPNVYGEVERSKMIVVKSNDKKGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DH  G LF + + + 
Sbjct: 117 EVEMTAYDDIARMILHMIDHFEGRLFTERVEKF 149


>gi|13358028|ref|NP_078302.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762059|ref|YP_001752550.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|23396555|sp|Q9PQ25|DEF_UREPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083081|sp|B1AJA6|DEF_UREP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|11357006|pir||F82886 polypeptide deformylase UU465 [imported] - Ureaplasma urealyticum
 gi|6899459|gb|AAF30877.1|AE002143_2 polypeptide deformylase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827636|gb|ACA32898.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
          Length = 198

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 20/167 (11%)

Query: 5   PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYST--------DGIGLAA 49
           P  IF  P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA
Sbjct: 18  PQWIFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAA 77

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-VKR 106
            Q+G   R   I   D A +++  + INP II  S + +     EGCLS+ D R+  V R
Sbjct: 78  NQVGWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIR 136

Query: 107 SAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152
           +  + V+  D  ++  I     G++A C+QHE+ HL+  L+ D++++
Sbjct: 137 NKKVHVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQ 183


>gi|312870530|ref|ZP_07730648.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
 gi|311093927|gb|EFQ52253.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
          Length = 136

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 12/135 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           ILR+VS+P  K +  +   + + L    +   +G+AA  IGV  R+++  L        P
Sbjct: 11  ILRQVSQPASKADLPVAQDLRDTL-TANADRCVGMAANMIGVTKRIIIASL-------GP 62

Query: 73  M--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +  V  NP+I+  S  + V QEGCLS+   R+   R   I VR+ +   + Q +      
Sbjct: 63  LQVVMFNPQIVAKSGPYQV-QEGCLSLSGQRS-TTRFQKIRVRFTNEQWEQQELTFTAFP 120

Query: 131 ATCLQHELDHLNGIL 145
           A  +QHE DH NGIL
Sbjct: 121 AEIIQHEFDHCNGIL 135


>gi|325696895|gb|EGD38782.1| peptide deformylase [Streptococcus sanguinis SK160]
          Length = 136

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++       +   P+V  NP + + S  +   +EGCLS+   R   
Sbjct: 42  LGLAANMIGVRKRVIIF-----LYGLVPVVMFNPVLRSKSGPYQT-EEGCLSLTGSRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   ITV Y+D N Q Q +   GL A   QHELDHL GIL
Sbjct: 95  QRYQEITVDYLDKNWQQQTMTLKGLPAQICQHELDHLEGIL 135


>gi|209554459|ref|YP_002284908.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|209541960|gb|ACI60189.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
          Length = 198

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 20/167 (11%)

Query: 5   PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYST--------DGIGLAA 49
           P  IF  P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA
Sbjct: 18  PQWIFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAA 77

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-VKR 106
            Q+G   R   I   D A +++  + INP II  S + +     EGCLS+ D R+  V R
Sbjct: 78  NQVGWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIR 136

Query: 107 SAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152
           +  + V+  D  ++  I     G++A C+QHE+ HL+  L+ D++++
Sbjct: 137 NKKVHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQ 183


>gi|330718596|ref|ZP_08313196.1| peptide deformylase [Leuconostoc fallax KCTC 3537]
          Length = 188

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 20/161 (12%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMY-STD-----------GIGLAAVQIGVLYR 57
           DP+LR  ++ +E  ++ +I  L  +M++ +  S D           G+GLAA Q+G   +
Sbjct: 13  DPVLRAQAKKVEFPLSDEIQQLTQDMMDYLVISQDDEQNEKYGLRPGVGLAAPQVGYSLQ 72

Query: 58  LVVIDL----QDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSAFI 110
           +  I +    +D           NP II+ S         EGCLS+  D    V R+  I
Sbjct: 73  MASILVPPLDEDSDEPYWQGTIFNPVIISESVKRGALNVGEGCLSVDEDVPGFVTRANRI 132

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           TVRY D   Q Q I      A   QHE+DHL+G L+ DH++
Sbjct: 133 TVRYQDEQGQTQTIKLRDYPAIIFQHEIDHLHGHLYYDHIN 173


>gi|160913556|ref|ZP_02076247.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991]
 gi|158434108|gb|EDP12397.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991]
          Length = 185

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K ++   D ++R+ S  +E  +N++   L+ +ML+ +  +              +G+AA+
Sbjct: 6   KDIIQDSDTVIRKKSVNVELPLNAEDKQLLMDMLQYVRDSQDNELAEQNGLRPAVGIAAI 65

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRS 107
           Q+G+  +++ + + D           N +I++ S   S  +  EGCLS+  +++  V R 
Sbjct: 66  QLGIPKKMLAVVVPDEEGNSQEFALANARIVSESVQLSYLKNGEGCLSVEKEHQGLVPRH 125

Query: 108 AFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           A ITV+  D     +I I A   LA  LQHE+DH +G LF D +++
Sbjct: 126 ARITVKAYDLLQNKEITIKASDYLAIVLQHEIDHFSGTLFYDRINQ 171


>gi|332363261|gb|EGJ41046.1| peptide deformylase [Streptococcus sanguinis SK49]
          Length = 136

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 9/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           + +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V
Sbjct: 12  LQQPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVV 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP +++ S  +   +EGCLS+   R   +R   ITV Y+D + Q Q +   GL A   
Sbjct: 67  MFNPVLLSKSGPYKT-EEGCLSLVGSRP-TQRYQEITVDYLDKHWQQQTMTLKGLPAQIC 124

Query: 135 QHELDHLNGIL 145
           QHELDHL GI+
Sbjct: 125 QHELDHLEGII 135


>gi|19746868|ref|NP_608004.1| peptide deformylase [Streptococcus pyogenes MGAS8232]
 gi|25452912|sp|Q8NZB7|DEF_STRP8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|19749109|gb|AAL98503.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232]
          Length = 204

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 12/129 (9%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS- 84
           M E +    G+GLAA QI V  R++ + + +   ++ NP         V  NPKI++ S 
Sbjct: 61  MAEKLGLRAGVGLAAPQIDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSV 120

Query: 85  -DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            D      EGCLS+       V R A +TV Y D   Q   I   G  A  +QHE+DH+N
Sbjct: 121 QDAALSDGEGCLSVDRVVEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHIN 180

Query: 143 GILFIDHLS 151
           GILF D ++
Sbjct: 181 GILFYDRIN 189


>gi|307705978|ref|ZP_07642803.1| polypeptide deformylase family protein [Streptococcus mitis SK564]
 gi|307620488|gb|EFN99599.1| polypeptide deformylase family protein [Streptococcus mitis SK564]
          Length = 136

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP +++F   +   +EGCLS+   R   
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGPYET-EEGCLSLVGVRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR   I V Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYETIKVAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|325697445|gb|EGD39331.1| peptide deformylase [Streptococcus sanguinis SK160]
 gi|332359962|gb|EGJ37776.1| peptide deformylase [Streptococcus sanguinis SK1056]
          Length = 210

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 18/131 (13%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--D 85
           E M    G+GLAA Q+ +  RL+ + + +      NP         +  NPKI+  S  D
Sbjct: 69  EKMGLRGGVGLAAPQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQD 128

Query: 86  DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
                 EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+DH+
Sbjct: 129 AALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHI 185

Query: 142 NGILFIDHLSR 152
           NGI+F D ++ 
Sbjct: 186 NGIMFYDRINE 196


>gi|239940680|ref|ZP_04692617.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998]
 gi|239987159|ref|ZP_04707823.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 11379]
 gi|291444118|ref|ZP_06583508.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291347065|gb|EFE73969.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 189

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 3/130 (2%)

Query: 22  EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81
           E++  ++   +D + +V     G+GLAA QIG+     V+     A     +V +NP+I 
Sbjct: 40  ERVVDELFAAMDRIGQVHPFAKGMGLAAPQIGISRAAAVVQPPGDAPS---IVLLNPRIT 96

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
              ++   + EGCLS  D R  V R   ITV     + +      +  LA  + HE+DHL
Sbjct: 97  VCCNESDEHYEGCLSFFDVRGPVPRPLTITVETTTQSGETVTTAYERGLARLIHHEIDHL 156

Query: 142 NGILFIDHLS 151
            G+L+   ++
Sbjct: 157 GGLLYTARMN 166


>gi|332638588|ref|ZP_08417451.1| peptide deformylase [Weissella cibaria KACC 11862]
          Length = 195

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           DP+LR+ +  +   ++ ++     NM+E +  +             G+GLAA Q+G+  +
Sbjct: 12  DPVLRQQAAKVTFPLSDEVKEATKNMMEYLVVSQNEEENEKCGLRPGVGLAAPQVGISQQ 71

Query: 58  LVVI-------DLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQ--EGCLS----IPD 99
              I       D  D      P  F      NP I   S   +     EGCLS    IP 
Sbjct: 72  FSSILIPDEDVDDTDIDEDAAPTYFFKGTIYNPVITRQSVKQTALSMGEGCLSVDEDIPG 131

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   V+R+  ITV+Y D N   Q +  +G  A   QHE+DHL+G L+ DH+S+
Sbjct: 132 Y---VERAYRITVKYQDENGDAQELKLEGYPAIVFQHEIDHLHGTLYYDHISK 181


>gi|264679313|ref|YP_003279220.1| peptide deformylase [Comamonas testosteroni CNB-2]
 gi|262209826|gb|ACY33924.1| peptide deformylase [Comamonas testosteroni CNB-2]
          Length = 173

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 11/145 (7%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R+++P+ + ++D ++L+   L   M++ +G GLAA QIG   ++VV    +   R
Sbjct: 5   DPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEPNPR 64

Query: 70  --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
               P+V     INP I    ++  +  EGCLS+P  RA V R  +  VRY   +     
Sbjct: 65  YPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPR--WNKVRYTGFDIYGDP 122

Query: 124 I--YADGLLATCLQHELDHLNGILF 146
           I    DG  A  +QHE DHL G L+
Sbjct: 123 IDRTVDGFHARVVQHECDHLWGKLY 147


>gi|52080056|ref|YP_078847.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|52003267|gb|AAU23209.1| main formylmethionine deformylase [Bacillus licheniformis ATCC
           14580]
          Length = 184

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLS----I 97
           G+GLAA QI +  R++ +  +            NPKI++ S    +    EGCLS    I
Sbjct: 58  GVGLAAPQININKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPI 117

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           P Y   V R   I V+      ++  I   G  A   QHE+DHLNGI+F DH+ +
Sbjct: 118 PGY---VPRYERIRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDK 169


>gi|15901392|ref|NP_345996.1| peptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|15903451|ref|NP_359001.1| peptide deformylase [Streptococcus pneumoniae R6]
 gi|111658457|ref|ZP_01409130.1| hypothetical protein SpneT_02000357 [Streptococcus pneumoniae
           TIGR4]
 gi|116515494|ref|YP_816841.1| peptide deformylase [Streptococcus pneumoniae D39]
 gi|148984899|ref|ZP_01818152.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|148997383|ref|ZP_01824988.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|168491557|ref|ZP_02715700.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|168575253|ref|ZP_02721216.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|169834412|ref|YP_001694956.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|194396850|ref|YP_002038183.1| peptide deformylase [Streptococcus pneumoniae G54]
 gi|221232262|ref|YP_002511415.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225854993|ref|YP_002736505.1| peptide deformylase [Streptococcus pneumoniae JJA]
 gi|225857177|ref|YP_002738688.1| peptide deformylase [Streptococcus pneumoniae P1031]
 gi|225861384|ref|YP_002742893.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230075|ref|ZP_06963756.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255200|ref|ZP_06978786.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503289|ref|YP_003725229.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|307068194|ref|YP_003877160.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|14973038|gb|AAK75636.1| polypeptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|15459060|gb|AAL00212.1| Formylmethionine deformylase [Streptococcus pneumoniae R6]
 gi|15858844|gb|AAK13237.1| peptide deformylase-like protein [Streptococcus pneumoniae]
 gi|116076070|gb|ABJ53790.1| polypeptide deformylase [Streptococcus pneumoniae D39]
 gi|147756438|gb|EDK63479.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|147922921|gb|EDK74037.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|168996914|gb|ACA37526.1| polypeptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|183574125|gb|EDT94653.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|183578738|gb|EDT99266.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|194356517|gb|ACF54965.1| peptide deformylase [Streptococcus pneumoniae G54]
 gi|220674723|emb|CAR69296.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225723305|gb|ACO19158.1| polypeptide deformylase [Streptococcus pneumoniae JJA]
 gi|225725217|gb|ACO21069.1| polypeptide deformylase [Streptococcus pneumoniae P1031]
 gi|225728377|gb|ACO24228.1| polypeptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238884|gb|ADI70015.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|301800382|emb|CBW33013.1| peptide deformylase [Streptococcus pneumoniae OXC141]
 gi|306409731|gb|ADM85158.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|327389740|gb|EGE88085.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA04375]
 gi|332199596|gb|EGJ13671.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332200116|gb|EGJ14189.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332200992|gb|EGJ15063.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 136

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP +++F   +   +EGCLS+   R+  
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR   I + Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYETIRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|328957239|ref|YP_004374625.1| peptide deformylase [Carnobacterium sp. 17-4]
 gi|328673563|gb|AEB29609.1| peptide deformylase [Carnobacterium sp. 17-4]
          Length = 187

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 26/164 (15%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58
           P LR V++ +   I+ +   L ++ML+ + ++             G+GLAA Q+ +  RL
Sbjct: 13  PTLRMVAKELTLPISEEEKQLGNDMLQFLKNSQDPEIAEKYNLRAGVGLAAPQLDISKRL 72

Query: 59  VVIDLQD-HAHRKNPM---VFINPKIITFSDDFS--VYQEGCLSI----PDYRADVKRSA 108
           + + +         P+   V +NPKII+ S   +     EGCLS+    P Y   V R +
Sbjct: 73  IAVHIPGIEEGIDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVPGY---VPRHS 129

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            IT+ Y D   +          A  +QHE+DH+NGI+F DH+++
Sbjct: 130 RITLTYFDLEGELHKTRLKNYPAIVIQHEIDHINGIMFYDHINK 173


>gi|52785431|ref|YP_091260.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|319646166|ref|ZP_08000396.1| peptide deformylase [Bacillus sp. BT1B_CT2]
 gi|52347933|gb|AAU40567.1| YkrB [Bacillus licheniformis ATCC 14580]
 gi|317391916|gb|EFV72713.1| peptide deformylase [Bacillus sp. BT1B_CT2]
          Length = 185

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLS----I 97
           G+GLAA QI +  R++ +  +            NPKI++ S    +    EGCLS    I
Sbjct: 59  GVGLAAPQININKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPI 118

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           P Y   V R   I V+      ++  I   G  A   QHE+DHLNGI+F DH+ +
Sbjct: 119 PGY---VPRYERIRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDK 170


>gi|182684506|ref|YP_001836253.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|307127760|ref|YP_003879791.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B]
 gi|182629840|gb|ACB90788.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|306484822|gb|ADM91691.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B]
          Length = 136

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP +++F   +   +EGCLS+   R+  
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR   I + Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYETIRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|223984418|ref|ZP_03634556.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM
           12042]
 gi|223963613|gb|EEF67987.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM
           12042]
          Length = 185

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 8/116 (6%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM----VFINPKIITFS--DDFSVYQEGCLSI 97
            +G+AA+QIG+  +L+ + + +     NP+       N KI++ S  + +    EGCLS+
Sbjct: 55  AVGIAAIQIGIPKQLLAVVVDEEDKNGNPIHYEYALANAKIVSQSVQNAYLKTGEGCLSV 114

Query: 98  -PDYRADVKRSAFITVRYMDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLS 151
             D+   V RSA I V+  D     ++ + A G +A  LQHE+DH +GILF D ++
Sbjct: 115 LDDHPGYVIRSARIKVKGYDMLQDREVTFRASGYVAIVLQHEIDHFSGILFYDRIN 170


>gi|307704401|ref|ZP_07641314.1| polypeptide deformylase family protein [Streptococcus mitis SK597]
 gi|307622045|gb|EFO01069.1| polypeptide deformylase family protein [Streptococcus mitis SK597]
          Length = 136

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP +++F   +   +EGCLS+   R   
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGPYET-EEGCLSLVGVRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR   I V Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYETIRVAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|289168375|ref|YP_003446644.1| predicted polypeptide deformylase [Streptococcus mitis B6]
 gi|288907942|emb|CBJ22782.1| predicted polypeptide deformylase [Streptococcus mitis B6]
          Length = 136

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP +++F D     +EGCLS+   R   
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSF-DGLYETEEGCLSLTGVRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR   I V Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYETIRVAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|227431846|ref|ZP_03913870.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352388|gb|EEJ42590.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 26/165 (15%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           DP+LR+ +  +   ++ +   L  +M+E +  +             G+GLAA Q+G   R
Sbjct: 15  DPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRPGVGLAAPQVGYSLR 74

Query: 58  LVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKR 106
           +  I        D  D  + K      NP II+ S         EGCLS+  D    V R
Sbjct: 75  MSSILIPALDPEDTTDEPYFKG--TIFNPVIISESVKRGALNVGEGCLSVDEDVPGFVPR 132

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  ITVRY D +   Q I      A   QHE+DHL+G L+ DH++
Sbjct: 133 AYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177


>gi|300811934|ref|ZP_07092395.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313122848|ref|YP_004033107.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|300497131|gb|EFK32192.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279411|gb|ADQ60130.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 143

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 17/147 (11%)

Query: 8   IFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGI----GLAAVQIGVLYRLV 59
           I  DP+   +S+P  K  ++      +L+D +L    S DG+    GLAA  IGV   ++
Sbjct: 6   IIHDPL--NLSQPAAKAAANDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMIGVNKAII 63

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++         P+V +NPKI+  S  + + +EGCLS+P  R    R   ITV+Y D + 
Sbjct: 64  AVNAG-----FLPIVMLNPKIVKRSGHY-LAEEGCLSLPGERP-ADRYEEITVKYQDMDL 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +       G +A  +QHE+DH  G L 
Sbjct: 117 KEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|171920111|ref|ZP_02690482.2| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508474|ref|ZP_02689332.2| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701869|ref|ZP_02553797.2| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|171902473|gb|EDT48762.1| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675891|gb|EDT87796.1| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701174|gb|EDU19456.1| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 198

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 20/167 (11%)

Query: 5   PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYST--------DGIGLAA 49
           P  IF  P P+LR V++ IE  +++ D +  +  M   ++V Y           GI +AA
Sbjct: 18  PQWIFKDPHPVLREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAA 77

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-VKR 106
            Q+G   R   I   D A +++  + INP II  S + +     EGCLS+ D R+  V R
Sbjct: 78  NQVGWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIR 136

Query: 107 SAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152
           +  + V+  D  ++  I     G++A C+QHE+ HL+  L+ D++++
Sbjct: 137 NKKVHVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQ 183


>gi|149038103|gb|EDL92463.1| component of oligomeric golgi complex 8 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 141

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 14/120 (11%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRK-----------NPM---VFINPKIITFSDDFSVY 90
           +GL+A Q+GV  +++V++  D   R             P    V +NP +         +
Sbjct: 7   VGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTF 66

Query: 91  QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            EGC S+  + A V R   + +  +D   +  +  A G  A  +QHE+DHL+G LFID +
Sbjct: 67  PEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKM 126


>gi|309776085|ref|ZP_07671076.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916036|gb|EFP61785.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 137

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 6/101 (5%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGVL R+++   QD     N ++ +NP II   +     +EGCL   D +  V
Sbjct: 42  VGMAANMIGVLKRIII--FQDGG---NYVIMLNPVIIKTGNKRYTTEEGCLC-HDTKKKV 95

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V ++D N + +I   +G  A  +QHELDH +GIL
Sbjct: 96  TRYEKIKVFFIDANGRKKIKTYEGFCAQIIQHELDHCDGIL 136


>gi|256850954|ref|ZP_05556343.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661168|ref|ZP_05862082.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|282934131|ref|ZP_06339409.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|297205836|ref|ZP_06923231.1| peptide deformylase [Lactobacillus jensenii JV-V16]
 gi|256616016|gb|EEU21204.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260548105|gb|EEX24081.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|281301745|gb|EFA94011.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|297148962|gb|EFH29260.1| peptide deformylase [Lactobacillus jensenii JV-V16]
          Length = 184

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 27/164 (16%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           DP+LRRV+  +    SD    L D+M+E + ++             G+GLAA Q+G   +
Sbjct: 12  DPVLRRVADQLTFPLSDHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71

Query: 58  LVVIDL-QDHAHRKNPMVFINPKIITFSDDFSVYQ------EGCLSIPDYRAD--VKRSA 108
           +  + +  D         F+NPKII+ S    V Q      EGCLS+ D   D  V R  
Sbjct: 72  MASLLVPNDKGEIIFKETFVNPKIISES----VRQVCLSEGEGCLSV-DKVIDGYVPRPN 126

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +T++Y   + + + I   G  A    HE+DHLNG LF D +++
Sbjct: 127 KLTIKYFTVDGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRINK 170


>gi|283768843|ref|ZP_06341754.1| peptide deformylase [Bulleidia extructa W1219]
 gi|283104629|gb|EFC06002.1| peptide deformylase [Bulleidia extructa W1219]
          Length = 188

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 21/163 (12%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLE-VMYSTD-----------GIGLAAVQIGVLYR 57
           +PI+R  S+ ++  ++ +  +L+ +ML+ V  STD            +G++A+Q+G+  R
Sbjct: 13  NPIIRTKSKEVKLPLSEEDASLLRDMLKYVQDSTDEEKAKKYNLRPAVGISAIQVGIPKR 72

Query: 58  LVVIDLQDHAHRKNPM----VFINPKIITFSDD--FSVYQEGCLSI-PDYRADVKRSAFI 110
           ++ + + D     NP+    +  N KI++ S    +    EGCLS+  D+   V R A +
Sbjct: 73  MMAVVVDDIDKNGNPIHYEYMLANAKIVSESAQPAYLSSGEGCLSVVQDHPGYVIRKARV 132

Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV   D      + I A G LA  LQHELDH +G LF D + +
Sbjct: 133 TVEAYDLITDSMVSIRARGYLAIVLQHELDHFDGHLFYDRIDK 175


>gi|30249715|ref|NP_841785.1| peptide deformylase [Nitrosomonas europaea ATCC 19718]
 gi|39931084|sp|Q82TW4|DEF1_NITEU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|30180752|emb|CAD85666.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
          Length = 176

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 10/160 (6%)

Query: 4   KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           KP++   DP L + +R +++  + ++  L+ +M + M + +G GLAA QIGV  ++V+  
Sbjct: 3   KPVLKMGDPCLLQPARRVDQFGTPELEALLQDMQDTMAALNGAGLAAPQIGVSLQVVIFG 62

Query: 63  LQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++      +       V INP +   ++      EGCLSIP  R  V R  +  +RY   
Sbjct: 63  VEHSPRYPDAESVPFTVLINPVLTPLTEQMEEDWEGCLSIPGMRGLVPR--YTRLRYQGV 120

Query: 118 NAQHQII--YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +A    I     G  A  +QHE DHLNGIL+   ++ L++
Sbjct: 121 DAAGASIDRTVTGFHARVVQHECDHLNGILYPMRINDLRK 160


>gi|91092264|ref|XP_967363.1| PREDICTED: similar to N-formylmethionylaminoacyl-tRNA deformylase,
           putative [Tribolium castaneum]
 gi|270001218|gb|EEZ97665.1| hypothetical protein TcasGA2_TC016210 [Tribolium castaneum]
          Length = 223

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 19/160 (11%)

Query: 11  DPILRRVS----RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-D 65
           DP LR VS    R + K+  +I  LI+ M  VM + + +GL+A Q+GV  +L +++    
Sbjct: 40  DPTLRTVSDVIPRDLIKL-PEIKFLINRMKNVMKNHNSVGLSAPQVGVPLQLFLVECNAK 98

Query: 66  HAHRKNPM-------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           H +  +P              V INP+I         + E C S+  + A+V R   + +
Sbjct: 99  HLNEYSPQEQKVKEMKVVPFKVVINPQIKITDYTKLTFVESCASVKGFHAEVPRYKSLKL 158

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              D   Q   +   G  A  +QHE+DHLNG ++ D + R
Sbjct: 159 EAFDEENQKFEMELTGWPARIVQHEVDHLNGKIYTDIMDR 198


>gi|227893768|ref|ZP_04011573.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
 gi|227864413|gb|EEJ71834.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
          Length = 137

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 7/100 (7%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           GLAA  IG   R++   +        P + INP+II  S ++ + +EGCLS+   R + K
Sbjct: 44  GLAANMIGKSKRIIAFYVGPF-----PFLMINPQIIKKSGEY-LAKEGCLSLDGER-EAK 96

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           R   ITV Y + N + +     G +A  +QHE+DH NGIL
Sbjct: 97  RYEKITVSYQNLNFEKETQSFSGFVAETIQHEVDHCNGIL 136


>gi|323340641|ref|ZP_08080893.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
 gi|323091764|gb|EFZ34384.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
          Length = 198

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 18/144 (12%)

Query: 23  KINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM---V 74
           K+  D+M  ++N  +   +       G+GLAA Q+    R+  + + D    K P    V
Sbjct: 46  KLAHDLMEFLENSQDEKIAKKYKLRAGVGLAAPQVDASKRITAVLVPDE-EGKPPFFKHV 104

Query: 75  FINPKIITFSDDFSVYQEG--CLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            +NP I++ S   +   EG  CLS+    P Y   V R   I +R+ D +    +     
Sbjct: 105 LVNPTILSESVQMAALSEGEGCLSVDREVPGY---VPRHEKIKLRWYDLDGNEHVERLRD 161

Query: 129 LLATCLQHELDHLNGILFIDHLSR 152
             A  +QHE+DHLNGI+F DH+++
Sbjct: 162 YTAIVVQHEIDHLNGIMFYDHINQ 185


>gi|70726862|ref|YP_253776.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435]
 gi|68447586|dbj|BAE05170.1| formylmethionine deformylase [Staphylococcus haemolyticus JCSC1435]
          Length = 183

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99
           G+GLAA QI V  R++ + L D  + K    + +NPKI++ S    +    EGCLS+  +
Sbjct: 58  GVGLAAPQINVSKRMIAVYLPDDGNGKAYDYMLVNPKIMSHSVQRAYLPTGEGCLSVDEN 117

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R   +T++ +D +     +   G  A   QHE+DHLNG++F D++ +
Sbjct: 118 IPGLVHRHFRVTIKALDIDGNEVKLRLKGYPAIIFQHEIDHLNGVMFYDYIDQ 170


>gi|315640077|ref|ZP_07895202.1| peptide deformylase [Enterococcus italicus DSM 15952]
 gi|315484205|gb|EFU74676.1| peptide deformylase [Enterococcus italicus DSM 15952]
          Length = 196

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 25/162 (15%)

Query: 12  PILRRVSRPI--------EKINSDIMNLIDNM-----LEVMYSTDGIGLAAVQIGVLYRL 58
           P LR +++ +        +++  D+   + N       E ++   G+GLAA Q+ V  R+
Sbjct: 23  PTLREIAKEVTFPLTEQEQQLGKDMFEFLVNSQDPIKAEELHLRGGVGLAAPQVNVSKRM 82

Query: 59  VVI---DLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAF 109
           + +     Q+    +   V  NPKI++ S  D      EGCLS+    P Y   V R A 
Sbjct: 83  IAVLVPSEQEDGEPEFAGVLYNPKIVSHSVQDACLGDGEGCLSVDRDVPGY---VVRHAR 139

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +T+ Y D       I      +  +QHE+DHLNG+LF D ++
Sbjct: 140 VTIAYQDETGAAHKIRLKNYPSIVVQHEIDHLNGVLFYDRIN 181


>gi|325124924|gb|ADY84254.1| Polypeptide deformylase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 143

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 17/147 (11%)

Query: 8   IFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGI----GLAAVQIGVLYRLV 59
           I  DP+   +S+P  K  +       +L+D +L    S DG+    GLAA  IGV   ++
Sbjct: 6   IIHDPL--SLSQPAAKAAASDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMIGVNKAII 63

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++         P+V +NPKI+  S  + + +EGCLS+P  R    R   ITV+Y D + 
Sbjct: 64  AVNA-----GFLPIVMLNPKIVKRSGHY-LAEEGCLSLPGERP-ADRYEEITVKYQDMDL 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +       G +A  +QHE+DH  G L 
Sbjct: 117 EEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|325289165|ref|YP_004265346.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964566|gb|ADY55345.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 136

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 12/142 (8%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQ 64
           +I  +  LR  S P     ++ ++++ ++L+ + +  G  +GLAA  IGV  R++ +  +
Sbjct: 5   IIKDEAFLRIPSAPAA---AEDLSVVQDLLDTLSANAGCCVGLAANMIGVAKRIIAVTAE 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +V +NP+I+  S+ +   +E CLS+   R   +R   I V+Y D   Q ++ 
Sbjct: 62  G-----GYLVMLNPEIVKQSEPYET-EEACLSLAGTR-KARRCKNIRVQYQDTALQTRLQ 114

Query: 125 YADGLLATCLQHELDHLNGILF 146
              G  A  +QHE+DH NGIL 
Sbjct: 115 NFKGFTAQIIQHEIDHCNGILI 136


>gi|325695505|gb|EGD37405.1| peptide deformylase [Streptococcus sanguinis SK150]
          Length = 220

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 18/131 (13%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--D 85
           E M    G+GLAA Q+ +  R++ + + +      NP         +  NPKI+  S  D
Sbjct: 79  EKMGLRGGVGLAAPQLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQD 138

Query: 86  DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
                 EGCLS+    P Y   V R A +TV Y D + Q   I   G  A  +QHE+DH+
Sbjct: 139 AALADGEGCLSVDREVPGY---VVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHI 195

Query: 142 NGILFIDHLSR 152
           NGI+F D ++ 
Sbjct: 196 NGIMFYDRINE 206


>gi|170703079|ref|ZP_02893901.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
 gi|171322052|ref|ZP_02910926.1| peptide deformylase [Burkholderia ambifaria MEX-5]
 gi|172060971|ref|YP_001808623.1| peptide deformylase [Burkholderia ambifaria MC40-6]
 gi|170132008|gb|EDT00514.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
 gi|171092643|gb|EDT37944.1| peptide deformylase [Burkholderia ambifaria MEX-5]
 gi|171993488|gb|ACB64407.1| peptide deformylase [Burkholderia ambifaria MC40-6]
          Length = 177

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L  V++P+ + ++ ++  ++ +M E M+  +G GLAA QIG+  ++++     +   
Sbjct: 10  DPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGSNNRY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INPK+     D     EGCLS+P  R  V R A +     D        
Sbjct: 70  PDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGYDQFGAKIDR 129

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+G  A  +QHE DHL G L+   ++   R   T+
Sbjct: 130 VAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165


>gi|325685192|gb|EGD27314.1| formylmethionine deformylase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 143

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 17/146 (11%)

Query: 8   IFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGI----GLAAVQIGVLYRLV 59
           I  DP+   +S+P  K  +       +L+D +L    S DG+    GLAA  IGV   ++
Sbjct: 6   IIHDPL--SLSQPAAKAAASDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMIGVNKAII 63

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++         P+V +NPKI+  S  + + +EGCLS+P  R    R   ITV+Y D + 
Sbjct: 64  AVNA-----GFLPIVMLNPKIVKGSGHY-LAEEGCLSLPGERP-ADRYEEITVKYQDMDL 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGIL 145
           +       G +A  +QHE+DH  G L
Sbjct: 117 KEHEQAFTGFVAETIQHEVDHCKGKL 142


>gi|58337138|ref|YP_193723.1| peptide deformylase [Lactobacillus acidophilus NCFM]
 gi|58254455|gb|AAV42692.1| polypeptide deformylase Pdf [Lactobacillus acidophilus NCFM]
          Length = 191

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 26/172 (15%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54
           DP+LRRVS  +    SD    L D+M+E + ++             G+GLAA Q+G    
Sbjct: 19  DPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVGEGVK 78

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111
           +  L+V D Q +   K+  +F+NP+II+ S   +   EG  CLS+ +     V R   +T
Sbjct: 79  MAALLVPDDQGNIIFKD--IFVNPEIISESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 136

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           V Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 137 VHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINKKDPYSLKEDTV 188


>gi|56808716|ref|ZP_00366436.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes
           M49 591]
 gi|209560096|ref|YP_002286568.1| peptide deformylase [Streptococcus pyogenes NZ131]
 gi|238058214|sp|B5XIL1|DEF_STRPZ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|209541297|gb|ACI61873.1| Peptide deformylase [Streptococcus pyogenes NZ131]
          Length = 204

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 12/129 (9%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS- 84
           M E +    G+GLAA QI V  R++ + + +   ++ NP         V  NPKI++ S 
Sbjct: 61  MAEKLGLRAGVGLAAPQIDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSV 120

Query: 85  -DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            D      EGCLS+       V R A +TV Y D   Q   I   G  A  +QHE+DH+N
Sbjct: 121 QDAALSDGEGCLSVDRVVEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHIN 180

Query: 143 GILFIDHLS 151
           G+LF D ++
Sbjct: 181 GVLFYDRIN 189


>gi|15675756|ref|NP_269930.1| peptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21911220|ref|NP_665488.1| peptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28896598|ref|NP_802948.1| peptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50915023|ref|YP_060995.1| peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71904319|ref|YP_281122.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71911482|ref|YP_283032.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94989300|ref|YP_597401.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94991246|ref|YP_599346.1| peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|94993189|ref|YP_601288.1| peptide deformylase [Streptococcus pyogenes MGAS2096]
 gi|94995159|ref|YP_603257.1| peptide deformylase [Streptococcus pyogenes MGAS10750]
 gi|139474444|ref|YP_001129160.1| peptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|306826604|ref|ZP_07459909.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
 gi|56748620|sp|Q5X9V1|DEF_STRP6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56749812|sp|P68772|DEF_STRP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62901513|sp|P68771|DEF_STRP1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122986892|sp|Q1J9R7|DEF_STRPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123257906|sp|Q1JEV7|DEF_STRPD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123258119|sp|Q1JJW6|DEF_STRPC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123382136|sp|Q1J4M3|DEF_STRPF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123761380|sp|Q48R93|DEF_STRPM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512785|sp|A2RGI0|DEF_STRPG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|13622977|gb|AAK34651.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21905433|gb|AAM80291.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28811852|dbj|BAC64781.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50904097|gb|AAT87812.1| Peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71803414|gb|AAX72767.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71854264|gb|AAZ52287.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94542808|gb|ABF32857.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94544754|gb|ABF34802.1| Peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|94546697|gb|ABF36744.1| Peptide deformylase [Streptococcus pyogenes MGAS2096]
 gi|94548667|gb|ABF38713.1| Peptide deformylase [Streptococcus pyogenes MGAS10750]
 gi|134272691|emb|CAM30962.1| polypeptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|304431182|gb|EFM34186.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
          Length = 204

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 12/129 (9%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS- 84
           M E +    G+GLAA QI V  R++ + + +   ++ NP         V  NPKI++ S 
Sbjct: 61  MAEKLGLRAGVGLAAPQIDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSV 120

Query: 85  -DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            D      EGCLS+       V R A +TV Y D   Q   I   G  A  +QHE+DH+N
Sbjct: 121 QDAALSDGEGCLSVDRVVEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHIN 180

Query: 143 GILFIDHLS 151
           G+LF D ++
Sbjct: 181 GVLFYDRIN 189


>gi|238853448|ref|ZP_04643827.1| peptide deformylase [Lactobacillus gasseri 202-4]
 gi|238834020|gb|EEQ26278.1| peptide deformylase [Lactobacillus gasseri 202-4]
          Length = 184

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P+LR+V+RP+   +  +   L D M++ + ++             G+GLAA Q+G   +
Sbjct: 12  NPVLRQVARPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGKSIQ 71

Query: 58  LVVIDL-QDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSI-PDYRADVKRSAFITVR 113
           +  + +  D        VF+NPKII+ S   +     EGCLS+  D    V R   + + 
Sbjct: 72  MAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRPDKLKIH 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 132 YYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|169404549|pdb|2OS3|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E.
           Faecalis And S. Pyogenes
          Length = 205

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 12/129 (9%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS- 84
           M E +    G+GLAA QI V  R++ + + +   ++ NP         V  NPKI++ S 
Sbjct: 60  MAEKLGLRAGVGLAAPQIDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSV 119

Query: 85  -DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            D      EGCLS+       V R A +TV Y D   Q   I   G  A  +QHE+DH+N
Sbjct: 120 QDAALSDGEGCLSVDRVVEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHIN 179

Query: 143 GILFIDHLS 151
           G+LF D ++
Sbjct: 180 GVLFYDRIN 188


>gi|315038072|ref|YP_004031640.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
 gi|312276205|gb|ADQ58845.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
          Length = 184

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 26/172 (15%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           DP+LR+V++P+    SD    L D+M+E + ++             G+GLAA Q+G   +
Sbjct: 12  DPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGESVQ 71

Query: 58  LVVIDLQDHAHR---KNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111
           +  + + D   +   K   +++NP+II+ S   +   EG  CLS+ +     V R   +T
Sbjct: 72  MAALLVPDDEGKIIFKE--IYVNPEIISESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 129

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           + Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQNPYDLKEDTV 181


>gi|293402350|ref|ZP_06646487.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304197|gb|EFE45449.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 139

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 11/136 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVV-IDLQDHAHR 69
           +L++ S P  + +   + +  N+LE + + +   +G+AA  IGV  R++  +D+   +H 
Sbjct: 11  LLQKTSEPATEKD---LWVAKNLLETLQAHEDRCVGMAANMIGVFKRIIAFVDIDTGSH- 66

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               V +NP+II  S +  + QE CLSI   R   +R   I VRY D +   +I      
Sbjct: 67  ---WVMLNPEIIKTSKETYLAQEQCLSISGIR-QTRRYRRIKVRYQDEHMNIKIKTFHDK 122

Query: 130 LATCLQHELDHLNGIL 145
            A  +QHE+DH NGIL
Sbjct: 123 TAQIIQHEIDHCNGIL 138


>gi|116492920|ref|YP_804655.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745]
 gi|122265616|sp|Q03F09|DEF_PEDPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116103070|gb|ABJ68213.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745]
          Length = 184

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 33/167 (19%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P+LR+ +  +   ++   + + D M+E + ++             G+GLAA QIG+  +
Sbjct: 12  NPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPAIAEKYHLRAGVGLAAPQIGLSIQ 71

Query: 58  LV---------VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVK 105
           +           IDL++          +NP I++ S   +  +EG  CLS+  D    V 
Sbjct: 72  MASVLVPGPDNTIDLEE--------TLVNPVIVSQSVQIAALEEGEGCLSVDKDVPGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   ITVRY   + + + I      A   QHE+DHL G LF DH+++
Sbjct: 124 RHDRITVRYQTLDGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINK 170


>gi|227903714|ref|ZP_04021519.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796]
 gi|227868601|gb|EEJ76022.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796]
          Length = 184

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 26/172 (15%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54
           DP+LRRVS  +    SD    L D+M+E + ++             G+GLAA Q+G    
Sbjct: 12  DPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVGEGVK 71

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111
           +  L+V D Q +   K+  +F+NP+II+ S   +   EG  CLS+ +     V R   +T
Sbjct: 72  MAALLVPDDQGNIIFKD--IFVNPEIISESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 129

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           V Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 130 VHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINKKDPYSLKEDTV 181


>gi|229918497|ref|YP_002887143.1| peptide deformylase [Exiguobacterium sp. AT1b]
 gi|229469926|gb|ACQ71698.1| peptide deformylase [Exiguobacterium sp. AT1b]
          Length = 179

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPDY- 100
           G+G+AA Q+GV  R   + LQ+        +F NPKI + S    F    EGCLS+    
Sbjct: 58  GVGIAAPQLGVNRRFFTVLLQEEEETFKLSIF-NPKITSHSVEQTFLNGGEGCLSVDRVV 116

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + +V R   IT+   D + +   +   G+ A   QHELDHL+GI+F D ++
Sbjct: 117 KGNVPRFRRITLEGFDRDGKPIKLRLRGMRAVVCQHELDHLDGIMFYDRIN 167


>gi|295103440|emb|CBL00984.1| N-formylmethionyl-tRNA deformylase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 136

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 13/141 (9%)

Query: 8   IFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYS-TDG-IGLAAVQIGVLYRLVVIDLQ 64
           I  DP+ L + S P    ++ +     ++LE + +  DG +G+AA  IGVL R++ ++ +
Sbjct: 5   IMHDPLFLAQKSAPATPEDAPVAR---DLLETLTAHADGCVGMAANMIGVLKRIIAVEAE 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D       +V  NP I+  S  +   +EGCLS+   R   KR   I V+Y   + + +I 
Sbjct: 62  D-----GYLVLFNPVILKKSGQYEA-EEGCLSLEGVR-KTKRWQSIKVQYQTMDGKPRIK 114

Query: 125 YADGLLATCLQHELDHLNGIL 145
              G  A  +QHE+DH +GIL
Sbjct: 115 TFTGWTAQIIQHEIDHCDGIL 135


>gi|322411042|gb|EFY01950.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 16/122 (13%)

Query: 44  GIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITFS--DDFSVY 90
           G+GLAA QI V  R++ +   +L D     NP         V  NPKI++ S  D     
Sbjct: 70  GVGLAAPQIDVSKRIIAVLVPNLPDQ--EGNPPKEAYSLQEVLYNPKIVSHSVQDAALAD 127

Query: 91  QEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            EGCLS+       V R A +TV Y D   +   I   G  A  +QHE+DH+NG++F D 
Sbjct: 128 GEGCLSVDRVVEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDR 187

Query: 150 LS 151
           ++
Sbjct: 188 IN 189


>gi|116494793|ref|YP_806527.1| peptide deformylase [Lactobacillus casei ATCC 334]
 gi|191638306|ref|YP_001987472.1| peptide deformylase [Lactobacillus casei BL23]
 gi|239631609|ref|ZP_04674640.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066358|ref|YP_003788381.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang]
 gi|122263789|sp|Q039N7|DEF_LACC3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238693032|sp|B3WE13|DEF_LACCB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116104943|gb|ABJ70085.1| peptide deformylase [Lactobacillus casei ATCC 334]
 gi|190712608|emb|CAQ66614.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus
           casei BL23]
 gi|239526074|gb|EEQ65075.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438765|gb|ADK18531.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang]
 gi|327382333|gb|AEA53809.1| Peptide deformylase [Lactobacillus casei LC2W]
 gi|327385534|gb|AEA57008.1| Peptide deformylase [Lactobacillus casei BD-II]
          Length = 184

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 17/157 (10%)

Query: 13  ILRRVSRPI--------EKINSDIMNLI-----DNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +LR  ++P+        +++  D+M  +     +   E  +   G+GLAA Q+G    + 
Sbjct: 14  VLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAPQVGQSKAMA 73

Query: 60  VIDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVRYM 115
            + +  D        V INP+II+ S   +   EG  CLS+  D    V R+  IT+ Y 
Sbjct: 74  AVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVRADRITISYQ 133

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +   +H+ I      A   QHE+DHLNG+LF DH+++
Sbjct: 134 NEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINK 170


>gi|293365121|ref|ZP_06611838.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|291316571|gb|EFE57007.1| peptide deformylase [Streptococcus oralis ATCC 35037]
          Length = 208

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 17/132 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNPM-------VFINPKIITFS-D 85
           M E M    G+GLAA Q+ +  R++ + + +     + P        V  NPKI++ S  
Sbjct: 66  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQ 125

Query: 86  DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+DH
Sbjct: 126 DAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 182

Query: 141 LNGILFIDHLSR 152
           LNGI+F D ++ 
Sbjct: 183 LNGIMFYDRINE 194


>gi|251781679|ref|YP_002995981.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390308|dbj|BAH80767.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 16/122 (13%)

Query: 44  GIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITFS--DDFSVY 90
           G+GLAA QI V  R++ +   +L D     NP         V  NPKI++ S  D     
Sbjct: 70  GVGLAAPQIDVSKRIIAVLVPNLPDQ--EGNPPKEAYSLQEVLYNPKIVSHSVQDAALAD 127

Query: 91  QEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            EGCLS+       V R A +TV Y D   +   I   G  A  +QHE+DH+NG++F D 
Sbjct: 128 GEGCLSVDRVVEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDR 187

Query: 150 LS 151
           ++
Sbjct: 188 IN 189


>gi|227535207|ref|ZP_03965256.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187091|gb|EEI67158.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 181

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 17/157 (10%)

Query: 13  ILRRVSRPI--------EKINSDIMNLI-----DNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +LR  ++P+        +++  D+M  +     +   E  +   G+GLAA Q+G    + 
Sbjct: 11  VLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAPQVGQSKAMA 70

Query: 60  VIDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVRYM 115
            + +  D        V INP+II+ S   +   EG  CLS+  D    V R+  IT+ Y 
Sbjct: 71  AVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVRADRITISYQ 130

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +   +H+ I      A   QHE+DHLNG+LF DH+++
Sbjct: 131 NEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINK 167


>gi|329115956|ref|ZP_08244673.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
 gi|326906361|gb|EGE53275.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
          Length = 204

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 16/131 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITF 83
           M E +    G+GLAA Q+ V  R++ +   +++D     NP         V  NPKI++ 
Sbjct: 61  MAEKLGLRGGVGLAAPQLDVSKRIIAVLVPNMEDA--EGNPPKEAFSIKEVMYNPKIVSH 118

Query: 84  S--DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           S  D      EGCLS+       V R A +TV Y D   +   I   G  A  +QHE+DH
Sbjct: 119 SVQDAALADGEGCLSVDRLIEGYVVRHARVTVEYFDKEGEKHRIKLKGYNAIVVQHEIDH 178

Query: 141 LNGILFIDHLS 151
           +NGI+F D ++
Sbjct: 179 INGIMFYDRIN 189


>gi|323126471|gb|ADX23768.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 204

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 16/122 (13%)

Query: 44  GIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITFS--DDFSVY 90
           G+GLAA QI V  R++ +   +L D     NP         V  NPKI++ S  D     
Sbjct: 70  GVGLAAPQIDVSKRIIAVLVPNLPDQ--EGNPPKEAYSLQEVLYNPKIVSHSVQDAALAD 127

Query: 91  QEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            EGCLS+       V R A +TV Y D   +   I   G  A  +QHE+DH+NG++F D 
Sbjct: 128 GEGCLSVDRVVEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDR 187

Query: 150 LS 151
           ++
Sbjct: 188 IN 189


>gi|199598173|ref|ZP_03211595.1| peptide deformylase [Lactobacillus rhamnosus HN001]
 gi|229552108|ref|ZP_04440833.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1]
 gi|258508310|ref|YP_003171061.1| peptide deformylase [Lactobacillus rhamnosus GG]
 gi|258539523|ref|YP_003174022.1| peptide deformylase [Lactobacillus rhamnosus Lc 705]
 gi|199590934|gb|EDY99018.1| peptide deformylase [Lactobacillus rhamnosus HN001]
 gi|229314541|gb|EEN80514.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1]
 gi|257148237|emb|CAR87210.1| Peptide deformylase [Lactobacillus rhamnosus GG]
 gi|257151199|emb|CAR90171.1| Peptide deformylase [Lactobacillus rhamnosus Lc 705]
 gi|259649627|dbj|BAI41789.1| peptide deformylase [Lactobacillus rhamnosus GG]
 gi|328462751|gb|EGF34641.1| peptide deformylase [Lactobacillus rhamnosus MTCC 5462]
          Length = 184

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 8/115 (6%)

Query: 44  GIGLAAVQIG---VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI- 97
           G+GLAA Q+G    +  ++V    D    K   V INP+II+ S   +   EG  CLS+ 
Sbjct: 58  GVGLAAPQVGQSKAMAAVLVPGDNDEILFKE--VLINPRIISNSVQHAALAEGEGCLSVD 115

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            D    V R+  IT+ Y +   +H+ +      A   QHE+DHLNG+LF DH+++
Sbjct: 116 KDVPGYVVRADRITIAYQNEAGEHKKVRLKNYPAIVCQHEIDHLNGVLFYDHINK 170


>gi|163840759|ref|YP_001625164.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
 gi|162954235|gb|ABY23750.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
          Length = 213

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 12/149 (8%)

Query: 12  PILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61
           P LR  ++P       S++   ++ M   M++  G GLAA Q+GV  +L V+        
Sbjct: 34  PTLRAPAQPWNGQLGASELEQFVELMRRCMHAAPGFGLAAPQLGVSLQLAVLEDGHQVDS 93

Query: 62  DLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++     R N   F  +NP+    +     + EGCLS+  ++A V R   I + Y   + 
Sbjct: 94  EIASIRERSNLPFFAMLNPRYQPLNSILVGFYEGCLSMSGWQAVVYRHHAIQLTYTTVDG 153

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           +       G  A  +QHE DHL G+L++D
Sbjct: 154 ELVQRELAGWPARIVQHETDHLAGMLYLD 182


>gi|307702174|ref|ZP_07639134.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|307624187|gb|EFO03164.1| peptide deformylase [Streptococcus oralis ATCC 35037]
          Length = 203

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 17/132 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNPM-------VFINPKIITFS-D 85
           M E M    G+GLAA Q+ +  R++ + + +     + P        V  NPKI++ S  
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQ 120

Query: 86  DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+DH
Sbjct: 121 DAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 177

Query: 141 LNGILFIDHLSR 152
           LNGI+F D ++ 
Sbjct: 178 LNGIMFYDRINE 189


>gi|299533459|ref|ZP_07046840.1| peptide deformylase [Comamonas testosteroni S44]
 gi|298718565|gb|EFI59541.1| peptide deformylase [Comamonas testosteroni S44]
          Length = 171

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 21/150 (14%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R+++P+ + ++D ++L+   L   M++ +G GLAA QIG   ++VV    +   R
Sbjct: 3   DPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEPNPR 62

Query: 70  --KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
               P+V     INP I    ++  +  EGCLS+P  RA V R  +  VRY   +     
Sbjct: 63  YPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPR--WNKVRYTGFD----- 115

Query: 124 IYAD-------GLLATCLQHELDHLNGILF 146
           IY D       G  A  +QHE DHL G L+
Sbjct: 116 IYGDPIDRTVEGFHARVVQHECDHLWGKLY 145


>gi|315612890|ref|ZP_07887801.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
 gi|315315000|gb|EFU63041.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
          Length = 208

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 17/132 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNPM-------VFINPKIITFS-D 85
           M E M    G+GLAA Q+ +  R++ + + +     + P        V  NPKI++ S  
Sbjct: 66  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQ 125

Query: 86  DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+DH
Sbjct: 126 DAALGEGEGCLSVDRNVPGY---VIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 182

Query: 141 LNGILFIDHLSR 152
           LNGI+F D ++ 
Sbjct: 183 LNGIMFYDRINE 194


>gi|58336410|ref|YP_192995.1| peptide deformylase [Lactobacillus acidophilus NCFM]
 gi|58253727|gb|AAV41964.1| polypeptide deformylase [Lactobacillus acidophilus NCFM]
          Length = 137

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           GLAA  IG   R++   +        PMV  NPKII   +++ +  EGCLS+   R  VK
Sbjct: 44  GLAANMIGEAKRIIAFYIVGM-----PMVMFNPKIIQKGNEY-LATEGCLSLNGERP-VK 96

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           R   ITV+Y + N +++     G +A  +QHE+DH +G
Sbjct: 97  RYEHITVKYQNINLEYETQEFSGFVAETIQHEIDHCDG 134


>gi|291531177|emb|CBK96762.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum 70/3]
          Length = 136

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGVL  ++ I+        + ++  NP+II  SD     +EGCLS+   R   
Sbjct: 42  VGMAANMIGVLKNIIAIN-----DNGDYLLMYNPEIIK-SDGAYETEEGCLSLDGVRK-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           KR   I VRY+D N + +I   +G  A  +QHE+DHL+GI+
Sbjct: 95  KRYKKIKVRYLDRNFKIKIKTYEGFTAQIIQHEVDHLSGII 135


>gi|15858848|gb|AAK13239.1| peptide deformylase-like protein DefA [Streptococcus pneumoniae]
          Length = 136

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP +++F   +   +EGCLS+   R+  
Sbjct: 42  VGLAANIIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR   I + Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYETIRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|114330947|ref|YP_747169.1| peptide deformylase [Nitrosomonas eutropha C91]
 gi|114307961|gb|ABI59204.1| peptide deformylase [Nitrosomonas eutropha C91]
          Length = 176

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 8/159 (5%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           KP++   DP L + ++ IE+ ++ ++  L+ +M + M + +G GLAA QIG+  ++V+  
Sbjct: 3   KPVLKMGDPRLLQPAQRIEQFDTPVLKELLQDMQDTMAALNGAGLAAPQIGISLQVVIFG 62

Query: 63  LQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           ++ H+ R   +      V INP +   +++     EGCLSIP  R  V R   +  + +D
Sbjct: 63  IE-HSPRYPDVESVPFTVLINPILTPLTEEQEEDWEGCLSIPGMRGLVPRYTHLRYQGVD 121

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             A        G  A  +QHE DHLNGIL+   ++ L++
Sbjct: 122 ETATPIDRTVAGFHARVVQHECDHLNGILYPMRINDLRK 160


>gi|327183352|gb|AEA31799.1| peptide deformylase [Lactobacillus amylovorus GRL 1118]
          Length = 184

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 22/170 (12%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           DP+LR+V++P+    SD    L D+M+E + ++             G+GLAA Q+G   +
Sbjct: 12  DPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGESVQ 71

Query: 58  LVVIDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFITVR 113
           +  + +  D        +++NP+II+ S   +   EG  CLS+ +     V R   +T+ 
Sbjct: 72  MAALLVPNDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDEVINGYVPRPDKLTIH 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 132 YYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQNPYALKEDTV 181


>gi|259503598|ref|ZP_05746500.1| peptide deformylase [Lactobacillus antri DSM 16041]
 gi|259168422|gb|EEW52917.1| peptide deformylase [Lactobacillus antri DSM 16041]
          Length = 136

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R+++  L        P+V  NP II  S  +   QEGCLS+   R+  
Sbjct: 42  VGMAANMIGVPKRVIIASLGPF-----PVVMFNPVIIAKSGPYQT-QEGCLSLAGQRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   ITVR+ +     Q +  D   A  +QHE+DH NGIL
Sbjct: 95  TRFQKITVRFTNEQWTQQELSLDAFPAEIVQHEIDHCNGIL 135


>gi|134296033|ref|YP_001119768.1| peptide deformylase [Burkholderia vietnamiensis G4]
 gi|134139190|gb|ABO54933.1| peptide deformylase [Burkholderia vietnamiensis G4]
          Length = 177

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 10/157 (6%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L  ++ P+ + ++ ++  ++ +M E M+  +G GLAA QIG+  ++++    ++   
Sbjct: 10  DPRLLEIAEPVGQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIIIFGFGNNNRY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INPK+     D     EGCLS+P  R  V R A   VRY+  +     I
Sbjct: 70  PDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYA--KVRYVGYDQFGAKI 127

Query: 125 --YADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              A+G  A  +QHE DHL G L+   ++   R   T
Sbjct: 128 DRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFT 164


>gi|328945770|gb|EGG39921.1| peptide deformylase [Streptococcus sanguinis SK1087]
          Length = 136

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 9/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           + +P E+ + + + L  ++ + + +   + +GLAA  IGV  R+++       +   P+V
Sbjct: 12  LQQPSEQASREDLYLAQDLQDTLQTNRENCLGLAANMIGVRKRVIIF-----LYGLVPVV 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP +   S  +   +EGCLS+   R   +R   ITV Y+D N Q Q +   GL A   
Sbjct: 67  MFNPVLRYKSGPYQT-EEGCLSLTGSRL-TQRYQEITVDYLDKNWQQQTMTLKGLPAQIC 124

Query: 135 QHELDHLNGIL 145
           QHELDHL GI+
Sbjct: 125 QHELDHLEGII 135


>gi|154500866|ref|ZP_02038904.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC
           29799]
 gi|150270366|gb|EDM97692.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC
           29799]
          Length = 136

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 9/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVM-YSTDG-IGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           +++  E    D + +  ++LE + +  DG +G+AA  IGV  R++  D     +    MV
Sbjct: 12  LAQKAEPATPDDIQIAADLLETLEHHKDGCVGMAANMIGVNKRIIAFD-----NEGTYMV 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP+I+  S  +   +EGCLS+   R   KR   I VR+ + + Q ++    G  A  +
Sbjct: 67  MFNPEIVKKSGPYDA-EEGCLSLTGIRP-AKRWQSIKVRWQNEHFQERLKAFTGWTAQII 124

Query: 135 QHELDHLNGIL 145
           QHELDH  GI+
Sbjct: 125 QHELDHCEGII 135


>gi|322374579|ref|ZP_08049093.1| peptide deformylase [Streptococcus sp. C300]
 gi|321280079|gb|EFX57118.1| peptide deformylase [Streptococcus sp. C300]
          Length = 203

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 17/132 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNPM-------VFINPKIITFS-D 85
           M E M    G+GLAA Q+ +  R++ + + +     + P        V  NPKI++ S  
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRVIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQ 120

Query: 86  DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+DH
Sbjct: 121 DAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 177

Query: 141 LNGILFIDHLSR 152
           LNGI+F D ++ 
Sbjct: 178 LNGIMFYDRINE 189


>gi|325693656|gb|EGD35575.1| peptide deformylase [Streptococcus sanguinis SK150]
 gi|327458954|gb|EGF05302.1| peptide deformylase [Streptococcus sanguinis SK1057]
 gi|332360611|gb|EGJ38421.1| peptide deformylase [Streptococcus sanguinis SK1056]
          Length = 136

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + F   +  R SR    +  D+ + +    E     + IGLAA  IGV  R+++      
Sbjct: 9   IFFLQQLSERASREDLYLAQDLQDTLQANRE-----NCIGLAANMIGVRKRVIIF----- 58

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            +   P+V  NP +++ S  +   +EGCLS+   R   +R   ITV Y+D + Q Q +  
Sbjct: 59  LYGLVPVVMFNPVLLSKSGPYKT-EEGCLSLVGSRP-TQRYQEITVDYLDKHWQQQTMTL 116

Query: 127 DGLLATCLQHELDHLNGIL 145
            GL A   QHELDHL GI+
Sbjct: 117 KGLPAQICQHELDHLEGII 135


>gi|116513303|ref|YP_812209.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092618|gb|ABJ57771.1| N-formylmethionyl-tRNA deformylase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 143

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 17/147 (11%)

Query: 8   IFPDPILRRVSRPIEKIN-SD---IMNLIDNMLEVMYSTDGI----GLAAVQIGVLYRLV 59
           I  DP+   +S+P  K   SD     +L+D +L    S DG+    GLAA  IGV   ++
Sbjct: 6   IIHDPL--SLSQPAAKAAVSDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMIGVNKAII 63

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++         P+V +NPKI+  S  + + +EGCLS+P  R    R   ITV+Y D + 
Sbjct: 64  AVNA-----GFLPIVMLNPKIVKRSGHY-LAEEGCLSLPGERP-ADRYEEITVKYQDMDL 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +       G +A  +QHE+DH  G L 
Sbjct: 117 EEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|331083358|ref|ZP_08332471.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404439|gb|EGG83984.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 136

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++++++         +V  NP ++     +   +EGCLS+P  R   
Sbjct: 42  VGMAANMIGVKKRVIIVNMGFV-----DVVMFNPVLVKKELPYET-EEGCLSLPGVRK-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y+D N + Q +  DG +A   QHELDHL GIL
Sbjct: 95  TRYQTIEVEYLDMNWKKQNLKLDGWIAQICQHELDHLEGIL 135


>gi|307706823|ref|ZP_07643628.1| peptide deformylase [Streptococcus mitis SK321]
 gi|307617908|gb|EFN97070.1| peptide deformylase [Streptococcus mitis SK321]
          Length = 203

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +  + A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPEEAYDLQAIMY-NPKIVSHSV 119

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 177 HINGIMFYDRINE 189


>gi|296111965|ref|YP_003622347.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154]
 gi|295833497|gb|ADG41378.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154]
          Length = 192

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 22/162 (13%)

Query: 11  DPILRRVSRPIE--------KINSDIMNLI----DNMLEVMYS-TDGIGLAAVQIGVLYR 57
           DP+LR++++P+         ++  D+M  +    D      Y    G+GLAA Q+G   +
Sbjct: 15  DPVLRQIAQPVPFPLSEEHAQLAKDMMTYLVISQDATQNETYGLRPGVGLAAPQVGYSLQ 74

Query: 58  LVVI---DLQDHAHRKNPM---VFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSA 108
           +  +    L  H     P       NP II+ S         EGCLS+  D    V R+ 
Sbjct: 75  MAAVLVPSLDPHESDDTPYFKGTIFNPTIISESVKRGALDVGEGCLSVDEDVPGFVPRAN 134

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +TVRY D     +II      A   QHE+DHL+G L+ DH+
Sbjct: 135 RVTVRYQDEIGDTKIIKLRDYPAIVFQHEIDHLHGHLYYDHI 176


>gi|207110973|ref|ZP_03245135.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 72

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 76  INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ A  LLA  +Q
Sbjct: 5   INPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQ 63

Query: 136 HELDHLNGI 144
           HE+DHLNG+
Sbjct: 64  HEIDHLNGV 72


>gi|116618440|ref|YP_818811.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116097287|gb|ABJ62438.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 192

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 26/165 (15%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           DP+LR+ +  +   ++ +   L  +M+E +  +             G+GLAA Q+G   R
Sbjct: 15  DPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRPGVGLAAPQVGYSLR 74

Query: 58  LVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKR 106
           +  I        D  D  + K      NP II+ S         EGCLS+  D    V R
Sbjct: 75  MSSILIPALDPEDTIDEPYFKG--TIFNPVIISESVKRGALNVGEGCLSVDEDVPGFVPR 132

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  ITVRY D +   Q I      A   QHE+DHL+G L+ DH++
Sbjct: 133 AYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177


>gi|319946366|ref|ZP_08020604.1| peptide deformylase [Streptococcus australis ATCC 700641]
 gi|319747519|gb|EFV99774.1| peptide deformylase [Streptococcus australis ATCC 700641]
          Length = 148

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R+++I          P+V  NP ++     +   +EGCLS+   R   
Sbjct: 54  VGMAANMIGVRKRVIIIQFG-----LMPLVLFNPVLVKKEGVYET-EEGCLSLAGSR-KT 106

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y D N + Q+I  +G  A   QHELDHL GIL
Sbjct: 107 SRFEKIQVSYRDMNWKPQLISLEGFAAQICQHELDHLEGIL 147


>gi|228474307|ref|ZP_04059042.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|314936719|ref|ZP_07844066.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
 gi|228271666|gb|EEK13013.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|313655338|gb|EFS19083.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
          Length = 183

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFS--DDFSVYQEGCLSI-PD 99
           G+GLAA QI +  +++ + L D    K+   + +NPK+I+ S    +    EGCLS+  +
Sbjct: 58  GVGLAAPQINISKKMIAVYLPDDGEGKSYDYMLVNPKVISHSVQHAYLPTGEGCLSVDEN 117

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R    T++  D +     +   G  A   QHE+DHLNGI+F D++ +
Sbjct: 118 IPGLVHRHYRTTIKAYDIDGNEVKLRLKGYPAIVFQHEIDHLNGIMFYDYIDK 170


>gi|254252055|ref|ZP_04945373.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
 gi|124894664|gb|EAY68544.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
          Length = 177

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 10/158 (6%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L  V+ P+ + ++ ++  ++ +M + M+  +G GLAA QIG+  ++++     +   
Sbjct: 10  DPRLLEVAEPVRQFDTPELHEIVADMFDTMHHANGAGLAAPQIGIGLQIIIFGFGSNNRY 69

Query: 70  KNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +       V INPKI     D     EGCLS+P  R  V R A   VRY+  +     I
Sbjct: 70  PDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYA--KVRYVGFDQFGAKI 127

Query: 125 --YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              A+G  A  +QHE DHL G L+   ++   R   T+
Sbjct: 128 DRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTE 165


>gi|270293023|ref|ZP_06199234.1| peptide deformylase [Streptococcus sp. M143]
 gi|270279002|gb|EFA24848.1| peptide deformylase [Streptococcus sp. M143]
          Length = 203

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMY-NPKIVSHSV 119

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEGCLSVDRVVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           HLNGI+F D ++ 
Sbjct: 177 HLNGIMFYDRINE 189


>gi|225859308|ref|YP_002740818.1| peptide deformylase [Streptococcus pneumoniae 70585]
 gi|303255336|ref|ZP_07341406.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|303260177|ref|ZP_07346149.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|303262567|ref|ZP_07348508.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|303264969|ref|ZP_07350884.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|303266432|ref|ZP_07352320.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|303269392|ref|ZP_07355162.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|225720965|gb|ACO16819.1| polypeptide deformylase [Streptococcus pneumoniae 70585]
 gi|301794560|emb|CBW37004.1| peptide deformylase [Streptococcus pneumoniae INV104]
 gi|301802269|emb|CBW35021.1| peptide deformylase [Streptococcus pneumoniae INV200]
 gi|302597704|gb|EFL64780.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|302636284|gb|EFL66778.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|302638674|gb|EFL69137.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|302641060|gb|EFL71437.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|302644010|gb|EFL74269.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|302645488|gb|EFL75720.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|332073889|gb|EGI84367.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 136

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IG+  R+++ +L        P+V  NP +++F   +   +EGCLS+   R+  
Sbjct: 42  VGLAANMIGMQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR   I + Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYETIRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|325956526|ref|YP_004291938.1| peptide deformylase [Lactobacillus acidophilus 30SC]
 gi|325333091|gb|ADZ06999.1| peptide deformylase [Lactobacillus acidophilus 30SC]
          Length = 184

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 26/172 (15%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           DP+LR+V++P+    SD    L D+M+E + ++             G+GLAA Q+G   +
Sbjct: 12  DPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGESVQ 71

Query: 58  LVVIDLQDHAHR---KNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111
           +  + + D   +   K   +++NP+II+ S   +   EG  CLS+       V R   +T
Sbjct: 72  MAALLVPDDEGKIIFKE--IYVNPEIISESVRQACLSEGEGCLSVDKVINGYVPRPDKLT 129

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           + Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQNPYALKEDTV 181


>gi|331266683|ref|YP_004326313.1| peptide deformylase [Streptococcus oralis Uo5]
 gi|326683355|emb|CBZ00973.1| peptide deformylase [Streptococcus oralis Uo5]
          Length = 203

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRVIAVLVPNIVEEGETPQEAYDLQAIMY-NPKIVSHSV 119

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           HLNGI+F D ++ 
Sbjct: 177 HLNGIMFYDRINE 189


>gi|193216926|ref|YP_002000168.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1]
 gi|193002249|gb|ACF07464.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1]
          Length = 185

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 23/167 (13%)

Query: 6   LVIFPDPILRRVSR----PIEKINSD-----IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           L+  P+  LR+ S     P+ K + D     I ++ D+  +       +G+AAVQ G+L 
Sbjct: 9   LIELPNKTLRQKSNDITLPLTKEDEDLIQKMIFHVDDSQEKETKFRPAVGVAAVQYGILK 68

Query: 57  RLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSI----PDYRADVKR 106
            +  I L+D     N ++F    INP+++  S+      EG  CLS+    P     V R
Sbjct: 69  NVFYILLKD---ENNEVLFKDALINPQMVAHSEHKLALDEGEGCLSVNQNDPGQAGYVPR 125

Query: 107 SAFITVRYMDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSR 152
            A + ++      + +  Y   G LA   QHE DHL G LFIDHL++
Sbjct: 126 YARVVMKAYSYYEKKEKTYDVSGYLAIIFQHEYDHLFGKLFIDHLNK 172


>gi|227524969|ref|ZP_03955018.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
 gi|227087881|gb|EEI23193.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
          Length = 136

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 11/119 (9%)

Query: 31  LIDNMLEVMYSTDGI--GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88
           +I ++L+ +++   I  G+AA  IGV  R++V+ +     R  P+  +NP+I+  S  F+
Sbjct: 26  IITDLLDTLHANTQICVGMAANMIGVNKRIIVVQM-----RMLPVALVNPEIVEKSVPFA 80

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQHQIIYADGLLATCLQHELDHLNGILF 146
             +EGCLS+   R+   R   ITV Y+D N   H+  ++D  +A  +QHE+DH  GIL 
Sbjct: 81  T-KEGCLSLEGQRS-TTRYKEITVTYLDQNFRSHRQGFSD-WIAQIIQHEVDHCEGILI 136


>gi|306825519|ref|ZP_07458859.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432457|gb|EFM35433.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 208

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 30/169 (17%)

Query: 11  DPILRRVSRPIEKINSD--------IMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57
           +P LR V+  +    SD        +M  + N     M E M    G+GLAA Q+ +  R
Sbjct: 29  NPTLRAVAEEVTFPLSDQEIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQLDISKR 88

Query: 58  LVVIDLQDHAHR-KNPM-------VFINPKIITFS-DDFSVYQ-EGCLSI----PDYRAD 103
           ++ + + +     + P        V  NPKI++ S  D ++ + EGCLS+    P Y   
Sbjct: 89  IIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRVVPGY--- 145

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 146 VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 194


>gi|238855249|ref|ZP_04645568.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|260664609|ref|ZP_05865461.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|282932458|ref|ZP_06337883.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|313471931|ref|ZP_07812423.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|238832141|gb|EEQ24459.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|239529143|gb|EEQ68144.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|260561674|gb|EEX27646.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|281303407|gb|EFA95584.1| peptide deformylase [Lactobacillus jensenii 208-1]
          Length = 184

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 27/164 (16%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           DP+LRRV+  +   ++     L D+M+E + ++             G+GLAA Q+G   +
Sbjct: 12  DPVLRRVADQLTFPLSEHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71

Query: 58  LVVIDL-QDHAHRKNPMVFINPKIITFSDDFSVYQ------EGCLSIPDYRAD--VKRSA 108
           +  + +  D         F+NPKI++ S    V Q      EGCLS+ D   D  V R  
Sbjct: 72  MASLLVPNDKGEIIFKETFVNPKIVSES----VRQVCLSEGEGCLSV-DKVIDGYVPRPN 126

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +T++Y     + + I   G  A    HE+DHLNG LF D + +
Sbjct: 127 KLTIKYFTVEGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|148988601|ref|ZP_01820034.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|148990374|ref|ZP_01821546.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|149021827|ref|ZP_01835834.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|168493454|ref|ZP_02717597.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06]
 gi|147924329|gb|EDK75421.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|147925802|gb|EDK76877.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|147930063|gb|EDK81050.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|183576408|gb|EDT96936.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06]
          Length = 136

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP +++F   +   +EGCLS+   R+  
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR     + Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYETTRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|81429108|ref|YP_396108.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610750|emb|CAI55801.1| Formylmethionine deformylase (formyl-L-methionyl
           peptideamidohydrolase) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 136

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSD-IMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L +V+ P    ++  I +LID +     +TD  +G+AA  IGV  R++++ +        
Sbjct: 12  LSQVALPATTADTAVITDLIDTL---QANTDRCVGMAANMIGVNKRIIIVQM-----GIL 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P++ +NPKII  S+ +   +EGCLS+   R+  KR   I V Y D   + Q     G +A
Sbjct: 64  PVIMVNPKIIRHSNPYQT-EEGCLSLVGQRS-TKRYETIEVSYQDRQFKAQQQAFSGWVA 121

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH  GIL 
Sbjct: 122 QIIQHEIDHCEGILI 136


>gi|163784804|ref|ZP_02179594.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879931|gb|EDP73645.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 108

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 7/109 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M K  ++ +PD  L+ VS+ +     +    ++ +   MY S  G+G+AA Q+    R +
Sbjct: 1   MKKLKILTYPDERLKVVSKEVIDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNKHIRTI 60

Query: 60  VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           ++D   + H+KN      MV  NPKII +  +  + +E C+S+PDY  +
Sbjct: 61  IVDASHYKHKKNKLNHGLMVLSNPKIIAYDGEI-IIRERCMSVPDYTGN 108


>gi|116629817|ref|YP_814989.1| peptide deformylase [Lactobacillus gasseri ATCC 33323]
 gi|282851676|ref|ZP_06261041.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311110541|ref|ZP_07711938.1| peptide deformylase [Lactobacillus gasseri MV-22]
 gi|122273245|sp|Q042S1|DEF_LACGA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116095399|gb|ABJ60551.1| peptide deformylase [Lactobacillus gasseri ATCC 33323]
 gi|282557644|gb|EFB63241.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311065695|gb|EFQ46035.1| peptide deformylase [Lactobacillus gasseri MV-22]
          Length = 184

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P+LR+V++P+   +  +   L D M++ + ++             G+GLAA Q+G   +
Sbjct: 12  NPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGKSIQ 71

Query: 58  LVVIDL-QDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSI-PDYRADVKRSAFITVR 113
           +  + +  D        VF+NPKII+ S   +     EGCLS+  D    V R   + + 
Sbjct: 72  MAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRPDKLKIH 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 132 YYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|325690383|gb|EGD32387.1| peptide deformylase [Streptococcus sanguinis SK115]
          Length = 136

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + F   +  R SR    +  D+ + +    E     + IGLAA  IGV  R+++      
Sbjct: 9   IFFLQQLSERASREDLYLAQDLQDTLQANRE-----NCIGLAANMIGVRKRVIIF----- 58

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            +   P+V  NP +++ S  +   +EGCLS+   R   +R   ITV Y+D + Q Q +  
Sbjct: 59  LYGLVPVVMFNPVLLSKSGPYKT-EEGCLSLVGSRP-TQRYQEITVDYLDKHWQQQTMTL 116

Query: 127 DGLLATCLQHELDHLNGIL 145
            GL A   QHELDHL G++
Sbjct: 117 KGLPAQICQHELDHLEGVI 135


>gi|308189670|ref|YP_003922601.1| peptide deformylase [Mycoplasma fermentans JER]
 gi|307624412|gb|ADN68717.1| peptide deformylase [Mycoplasma fermentans JER]
          Length = 189

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 30/173 (17%)

Query: 6   LVIFPDPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIGV 54
           LV  P+ ILR+ S+    P+ K + ++   +   ++     D       G+G+AA+Q G+
Sbjct: 7   LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 66

Query: 55  LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLSIPD-------YR 101
             R+  I++ +       +     V INPK++  S+ + S+  EGCLS+ D       Y 
Sbjct: 67  PKRMFYININNETINGAKIEDFRDVLINPKVLAISEYEVSLPGEGCLSVGDNIKNQEGYV 126

Query: 102 ADVKRSAFITVRYMDCNAQHQ--IIYADGLLATCLQHELDHLNGILFIDHLSR 152
              KR       Y +   +H   + YA    A   QHE DHL G LFID +++
Sbjct: 127 YRKKRIVLEAYSYFEKKVKHYDLVDYA----AIVAQHEFDHLEGKLFIDRINK 175


>gi|322373777|ref|ZP_08048312.1| peptide deformylase [Streptococcus sp. C150]
 gi|321277149|gb|EFX54219.1| peptide deformylase [Streptococcus sp. C150]
          Length = 204

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 18/131 (13%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS-DD 86
           E M    G+GLAA Q+ +  R++ + + +      NP         +  NPK++  S  D
Sbjct: 63  EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQD 122

Query: 87  FSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
            ++ + EGCLS+    P Y   V R A +TV Y +   + + I   G  +  +QHE+DH 
Sbjct: 123 AALGEGEGCLSVDRDVPGY---VVRHARVTVEYFNKEGEKKRIKFRGYNSIVVQHEIDHT 179

Query: 142 NGILFIDHLSR 152
           NGI+F DH+++
Sbjct: 180 NGIMFYDHINK 190


>gi|149007536|ref|ZP_01831171.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|149007898|ref|ZP_01831485.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|147760625|gb|EDK67599.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|147760895|gb|EDK67865.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|332074306|gb|EGI84783.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 136

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP +++F   +   +EGCLS+   R+  
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR     + Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYETTRLAYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|255523790|ref|ZP_05390755.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
 gi|255512493|gb|EET88768.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
          Length = 165

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 11/150 (7%)

Query: 1   MVKKPLVIFPDPILRRV----SRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55
           M+K+ L++  D + ++        ++ I   +++L D +++     + G  +AA QIGV 
Sbjct: 1   MLKEILLLGNDALYKKSLLVQKEELDSIKGTVLDLHDTLIDFRKKYNAGRAIAAPQIGVF 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+      + +   P+VFINP +   + +     + C+S P+    V R    TV Y 
Sbjct: 61  KRLI------YMYIDKPIVFINPILKFDNKEIMEVMDDCMSFPNLLVKVNRYKECTVMYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           D +   + I  +G L+  +QHE DHL+GIL
Sbjct: 115 DIDFIDRTIKFEGNLSELIQHEYDHLDGIL 144


>gi|257790516|ref|YP_003181122.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
 gi|257474413|gb|ACV54733.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
          Length = 136

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +L+R S P  + +  I   + + LE  +    +G+AA  IG L R++V D    +H    
Sbjct: 11  VLQRASAPATEADLPIAQDLLDTLEA-HRHSCVGMAANMIGELKRIIVFD-DGGSH---- 64

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +  +NP+II+ +  +   +EGCLS+   R+   R   I V Y D   + ++    G  A 
Sbjct: 65  VAMLNPEIISCAGTYEA-EEGCLSLSGTRS-ATRYRTIKVSYQDLAMKPRVKTFTGFTAQ 122

Query: 133 CLQHELDHLNGILF 146
            +QHE+DH NG+L 
Sbjct: 123 IIQHEIDHCNGVLI 136


>gi|325684372|gb|EGD26541.1| peptide deformylase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 207

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 23/162 (14%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIG---V 54
           DP+LR+V++ +    SD    L D+M+E + ++             G+GLAA Q+G    
Sbjct: 35  DPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAPQVGEGVS 94

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110
           +  L+V D +     K   V++NP+II+ S   +   EG  CLS+ D   D  V R   +
Sbjct: 95  MAALLVPDDKGEIIFKE--VYVNPEIISESVRKTCLGEGEGCLSV-DKVIDGYVPRPNKV 151

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y   + + + I   G  A    HE+DHLNG LF D +++
Sbjct: 152 TVHYWTADGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINK 193


>gi|309798501|ref|ZP_07692783.1| peptide deformylase [Streptococcus infantis SK1302]
 gi|308117873|gb|EFO55267.1| peptide deformylase [Streptococcus infantis SK1302]
          Length = 203

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 17/132 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNPM-----VFINPKIITFS-D 85
           M E +    G+GLAA Q+ +  R++ +   ++ +             V  NPKI++ S  
Sbjct: 61  MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQ 120

Query: 86  DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+DH
Sbjct: 121 DAALGEGEGCLSVDRAVPGY---VIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 177

Query: 141 LNGILFIDHLSR 152
           LNGI+F D ++ 
Sbjct: 178 LNGIMFYDRINE 189


>gi|319776853|ref|YP_004136504.1| peptide deformylase [Mycoplasma fermentans M64]
 gi|318037928|gb|ADV34127.1| Peptide deformylase [Mycoplasma fermentans M64]
          Length = 189

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 30/173 (17%)

Query: 6   LVIFPDPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIGV 54
           LV  P+ ILR+ S+    P+ K + ++   +   ++     D       G+G+AA+Q G+
Sbjct: 7   LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 66

Query: 55  LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLSIPD-------YR 101
             R+  I++ +       +     V INPK++  S+ + S+  EGCLS+ D       Y 
Sbjct: 67  PKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGYV 126

Query: 102 ADVKRSAFITVRYMDCNAQHQ--IIYADGLLATCLQHELDHLNGILFIDHLSR 152
              KR       Y +   +H   + YA    A   QHE DHL G LFID +++
Sbjct: 127 YRKKRIVLEAYSYFEKKVKHYDLVDYA----AIVAQHEFDHLEGKLFIDRINK 175


>gi|295106021|emb|CBL03564.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 136

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 9/115 (7%)

Query: 31  LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY 90
           L+D +    ++ + +G+AA  IG   R++V D +       P V  NP+I+  S  +   
Sbjct: 30  LLDTL--AAHAHECVGMAANMIGTAKRIIVFDDEG-----TPRVMFNPEIVGRSGTYEA- 81

Query: 91  QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +EGCLS+P  R    R   I VR+ D   Q +     G  A  +QHE+DH +GIL
Sbjct: 82  EEGCLSLPGSR-RTTRYRTIKVRFEDRGFQPREQTFTGFTAQIIQHEIDHCDGIL 135


>gi|331266006|ref|YP_004325636.1| polypeptide deformylase, putative [Streptococcus oralis Uo5]
 gi|326682678|emb|CBZ00295.1| polypeptide deformylase, putative [Streptococcus oralis Uo5]
          Length = 136

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP ++++   +   +EGCLS+   R   
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPIVMFNPILLSYEGPYET-EEGCLSLTGVRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
            R   ITV Y D   Q Q I   G      QHELDHL G
Sbjct: 95  TRFETITVSYRDSKWQEQTITLTGFPVQICQHELDHLEG 133


>gi|306829233|ref|ZP_07462423.1| peptide deformylase [Streptococcus mitis ATCC 6249]
 gi|304428319|gb|EFM31409.1| peptide deformylase [Streptococcus mitis ATCC 6249]
          Length = 208

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSD 85
           M E M    G+GLAA Q+ +  R++ +         +  + A+    +++ NPKI++ S 
Sbjct: 66  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPEEAYDLQAIMY-NPKIVSHSV 124

Query: 86  DFSVYQEG--CLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
             +   EG  CLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 125 QNAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 181

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 182 HINGIMFYDRINE 194


>gi|307702002|ref|ZP_07639010.1| peptide deformylase [Streptococcus mitis NCTC 12261]
 gi|307616647|gb|EFN95836.1| peptide deformylase [Streptococcus mitis NCTC 12261]
          Length = 203

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMY-NPKIVSHSV 119

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 177 HINGIMFYDRINE 189


>gi|104773846|ref|YP_618826.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|122983972|sp|Q1GAR4|DEF_LACDA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|103422927|emb|CAI97589.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 184

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 23/162 (14%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIG---V 54
           DP+LR+V++ +    SD    L D+M+E + ++             G+GLAA Q+G    
Sbjct: 12  DPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAPQVGEGVS 71

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110
           +  L+V D +     K   V++NP+II+ S   +   EG  CLS+ D   D  V R   +
Sbjct: 72  MAALLVPDDKGEIIFKE--VYVNPEIISESVRKTCLSEGEGCLSV-DKVIDGYVPRPNKV 128

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y   + + + I   G  A    HE+DHLNG LF D +++
Sbjct: 129 TVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINK 170


>gi|167751759|ref|ZP_02423886.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702]
 gi|167655567|gb|EDR99696.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702]
 gi|291557962|emb|CBL35079.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum V10Sc8a]
          Length = 136

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IG+L  ++ I+        + ++  NP+II  SD     +EGCLS+   R   
Sbjct: 42  VGMAANMIGILKNIIAIN-----DNGDYLLMYNPEIIK-SDGAYETEEGCLSLDGLRK-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           KR   I VRY+D N + +I   +G  A  +QHE DHL+GI+
Sbjct: 95  KRYKKIKVRYLDRNFKIKIKTYEGFTAQIIQHETDHLSGII 135


>gi|332652856|ref|ZP_08418601.1| peptide deformylase [Ruminococcaceae bacterium D16]
 gi|332518002|gb|EGJ47605.1| peptide deformylase [Ruminococcaceae bacterium D16]
          Length = 136

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 9/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           +++  E    D + +  ++LE +  +    +G+AA  IGV  R++  D     +    MV
Sbjct: 12  LAQKAEPATPDDLPIAADLLETLEHHKAGCVGMAANMIGVNKRIIAFD-----NEGTYMV 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP+II  S  +   +EGCLS+   R   KR   I VR+ +   Q ++    G  A  +
Sbjct: 67  MFNPEIIKQSGPYEA-EEGCLSLTGTRP-AKRWKSIKVRWQNEKFQERLKTFTGWTAQII 124

Query: 135 QHELDHLNGIL 145
           QHE+DH  GI+
Sbjct: 125 QHEIDHCEGII 135


>gi|218283358|ref|ZP_03489392.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989]
 gi|218215912|gb|EEC89450.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989]
          Length = 145

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 8/128 (6%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           S P  K+++ +   + + L+  YS   +G+AA  IGV   +++  ++        +V  N
Sbjct: 25  SAPATKMDTQVAQDLKDTLQA-YSDQCVGMAANMIGVSKNIIIFAIEPAQ-----IVMYN 78

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
           PKI   S  + V +EGCLS+   R +  R   ITV Y D + +       G +A  +QHE
Sbjct: 79  PKITKKSRPYKV-KEGCLSLEGER-NTTRYENITVEYQDESFKKCKQSYSGFVAQIIQHE 136

Query: 138 LDHLNGIL 145
           +DH NGI+
Sbjct: 137 IDHCNGII 144


>gi|15903353|ref|NP_358903.1| peptide deformylase [Streptococcus pneumoniae R6]
 gi|116516110|ref|YP_816751.1| peptide deformylase [Streptococcus pneumoniae D39]
 gi|148984798|ref|ZP_01818051.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|148992660|ref|ZP_01822328.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|148997485|ref|ZP_01825090.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|149002851|ref|ZP_01827777.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|149019400|ref|ZP_01834762.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|168483932|ref|ZP_02708884.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00]
 gi|168489617|ref|ZP_02713816.1| peptide deformylase [Streptococcus pneumoniae SP195]
 gi|168493357|ref|ZP_02717500.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06]
 gi|168575913|ref|ZP_02721828.1| peptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|169833382|ref|YP_001694872.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|182684413|ref|YP_001836160.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|221232181|ref|YP_002511334.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225854897|ref|YP_002736409.1| peptide deformylase [Streptococcus pneumoniae JJA]
 gi|225859217|ref|YP_002740727.1| peptide deformylase [Streptococcus pneumoniae 70585]
 gi|237651106|ref|ZP_04525358.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974]
 gi|237821019|ref|ZP_04596864.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2]
 gi|303254384|ref|ZP_07340491.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|303259052|ref|ZP_07345031.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|303261732|ref|ZP_07347679.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|303264405|ref|ZP_07350325.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|303267527|ref|ZP_07353375.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|303269331|ref|ZP_07355104.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|307068106|ref|YP_003877072.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|39930890|sp|Q8DP79|DEF_STRR6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122278363|sp|Q04JP7|DEF_STRP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238688366|sp|B1ICN7|DEF_STRPI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238691170|sp|B2IQS1|DEF_STRPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767602|sp|C1C851|DEF_STRP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767603|sp|B8ZL02|DEF_STRPJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767605|sp|C1CF38|DEF_STRZJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|15458954|gb|AAL00114.1| Peptide deformylase, N-formylmethionylaminoacyl-tRNA deformylase
           [Streptococcus pneumoniae R6]
 gi|15858846|gb|AAK13238.1| peptide deformylase DefB [Streptococcus pneumoniae]
 gi|116076686|gb|ABJ54406.1| peptide deformylase [Streptococcus pneumoniae D39]
 gi|147756540|gb|EDK63581.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|147759145|gb|EDK66139.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|147922820|gb|EDK73936.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|147928677|gb|EDK79691.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|147931270|gb|EDK82249.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|168995884|gb|ACA36496.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|172042804|gb|EDT50850.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00]
 gi|182629747|gb|ACB90695.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|183571999|gb|EDT92527.1| peptide deformylase [Streptococcus pneumoniae SP195]
 gi|183576731|gb|EDT97259.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06]
 gi|183578335|gb|EDT98863.1| peptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|220674642|emb|CAR69211.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225721908|gb|ACO17762.1| peptide deformylase [Streptococcus pneumoniae 70585]
 gi|225722966|gb|ACO18819.1| peptide deformylase [Streptococcus pneumoniae JJA]
 gi|301800306|emb|CBW32932.1| polypeptide deformylase [Streptococcus pneumoniae OXC141]
 gi|301802184|emb|CBW34930.1| polypeptide deformylase [Streptococcus pneumoniae INV200]
 gi|302598631|gb|EFL65670.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|302637312|gb|EFL67800.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|302639995|gb|EFL70451.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|302641161|gb|EFL71535.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|302642928|gb|EFL73227.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|302646217|gb|EFL76444.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|306409643|gb|ADM85070.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|332073763|gb|EGI84242.1| peptide deformylase [Streptococcus pneumoniae GA17570]
 gi|332073793|gb|EGI84271.1| peptide deformylase [Streptococcus pneumoniae GA41301]
 gi|332200898|gb|EGJ14970.1| peptide deformylase [Streptococcus pneumoniae GA41317]
 gi|332201894|gb|EGJ15964.1| peptide deformylase [Streptococcus pneumoniae GA47368]
          Length = 203

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 119

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 177 HINGIMFYDRINE 189


>gi|15901306|ref|NP_345910.1| peptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|111657373|ref|ZP_01408130.1| hypothetical protein SpneT_02001427 [Streptococcus pneumoniae
           TIGR4]
 gi|148990264|ref|ZP_01821475.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|149007273|ref|ZP_01830931.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|149011684|ref|ZP_01832880.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|168486151|ref|ZP_02710659.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00]
 gi|168491354|ref|ZP_02715497.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|225857082|ref|YP_002738593.1| peptide deformylase [Streptococcus pneumoniae P1031]
 gi|225860775|ref|YP_002742284.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230951|ref|ZP_06964632.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254975|ref|ZP_06978561.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502590|ref|YP_003724530.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|307126974|ref|YP_003879005.1| peptide deformylase [Streptococcus pneumoniae 670-6B]
 gi|17432945|sp|Q9F2F0|DEF_STRPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767606|sp|C1CLF5|DEF_STRZP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767607|sp|C1CQR2|DEF_STRZT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|11125374|emb|CAC15392.1| polypeptide deformylase [Streptococcus pneumoniae]
 gi|14972945|gb|AAK75550.1| peptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|15858850|gb|AAK13240.1| peptide deformylase DefB [Streptococcus pneumoniae]
 gi|147761077|gb|EDK68045.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|147764115|gb|EDK71047.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|147924403|gb|EDK75493.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|183570800|gb|EDT91328.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00]
 gi|183574326|gb|EDT94854.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|225726126|gb|ACO21978.1| peptide deformylase [Streptococcus pneumoniae P1031]
 gi|225727795|gb|ACO23646.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238185|gb|ADI69316.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|306484036|gb|ADM90905.1| peptide deformylase [Streptococcus pneumoniae 670-6B]
 gi|327389641|gb|EGE87986.1| peptide deformylase [Streptococcus pneumoniae GA04375]
 gi|332074778|gb|EGI85252.1| peptide deformylase [Streptococcus pneumoniae GA17545]
          Length = 203

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 119

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 177 HINGIMFYDRINE 189


>gi|256842908|ref|ZP_05548396.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|293381229|ref|ZP_06627236.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|312977571|ref|ZP_07789318.1| peptide deformylase [Lactobacillus crispatus CTV-05]
 gi|256614328|gb|EEU19529.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|290922197|gb|EFD99192.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|310895310|gb|EFQ44377.1| peptide deformylase [Lactobacillus crispatus CTV-05]
          Length = 184

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 26/172 (15%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54
           DP+LR+V++P+    SD    L D+M++ +  +             G+GLAA Q+G    
Sbjct: 12  DPVLRQVAKPLTFPFSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111
           +  L+V D Q     K   V++NP+I++ S   +   EG  CLS+ +     V R   +T
Sbjct: 72  MAALLVPDDQGKIIFKE--VYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 129

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           + Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQDPFALKEDTV 181


>gi|289168210|ref|YP_003446479.1| peptide deformylase [Streptococcus mitis B6]
 gi|307704979|ref|ZP_07641866.1| peptide deformylase [Streptococcus mitis SK597]
 gi|322376907|ref|ZP_08051400.1| peptide deformylase [Streptococcus sp. M334]
 gi|288907777|emb|CBJ22617.1| peptide deformylase [Streptococcus mitis B6]
 gi|307621430|gb|EFO00480.1| peptide deformylase [Streptococcus mitis SK597]
 gi|321282714|gb|EFX59721.1| peptide deformylase [Streptococcus sp. M334]
          Length = 203

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMY-NPKIVSHSV 119

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 177 HINGIMFYDRINE 189


>gi|238809638|dbj|BAH69428.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 195

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 30/173 (17%)

Query: 6   LVIFPDPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTD-------GIGLAAVQIGV 54
           LV  P+ ILR+ S+    P+ K + ++   +   ++     D       G+G+AA+Q G+
Sbjct: 13  LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 72

Query: 55  LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLSIPD-------YR 101
             R+  I++ +       +     V INPK++  S+ + S+  EGCLS+ D       Y 
Sbjct: 73  PKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGYV 132

Query: 102 ADVKRSAFITVRYMDCNAQHQ--IIYADGLLATCLQHELDHLNGILFIDHLSR 152
              KR       Y +   +H   + YA    A   QHE DHL G LFID +++
Sbjct: 133 YRKKRIVLEAYSYFEKKVKHYDLVDYA----AIVAQHEFDHLEGKLFIDRINK 181


>gi|325125510|gb|ADY84840.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 184

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 23/162 (14%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIG---V 54
           DP+LR+V++ +    SD    L D+M+E + ++             G+GLAA Q+G    
Sbjct: 12  DPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHHLRAGVGLAAPQVGEGVS 71

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110
           +  L+V D +     K   V++NP+II+ S   +   EG  CLS+ D   D  V R   +
Sbjct: 72  MAALLVPDDKGEIIFKE--VYVNPEIISESVRKTCLSEGEGCLSV-DKVIDGYVPRPNKV 128

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y   + + + I   G  A    HE+DHLNG LF D +++
Sbjct: 129 TVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINK 170


>gi|116513853|ref|YP_812759.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|122275377|sp|Q04B51|DEF_LACDB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116093168|gb|ABJ58321.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 184

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 23/162 (14%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIG---V 54
           DP+LR+V++ +    SD    L D+M+E + ++             G+GLAA Q+G    
Sbjct: 12  DPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAPQVGEGVS 71

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110
           +  L+V D +     K   V++NP+II+ S   +   EG  CLS+ D   D  V R   +
Sbjct: 72  MAALLVPDDKGEIIFKE--VYVNPEIISESVRKTCLSEGEGCLSV-DKVIDGYVPRPNKV 128

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y   + + + I   G  A    HE+DHLNG LF D +++
Sbjct: 129 TVHYWTVDGEEKAIRLKGYPAIVSGHEIDHLNGHLFYDRINK 170


>gi|28378768|ref|NP_785660.1| peptide deformylase [Lactobacillus plantarum WCFS1]
 gi|254556973|ref|YP_003063390.1| peptide deformylase [Lactobacillus plantarum JDM1]
 gi|38257321|sp|Q88VB2|DEF_LACPL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28271605|emb|CAD64511.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1]
 gi|254045900|gb|ACT62693.1| peptide deformylase [Lactobacillus plantarum JDM1]
          Length = 186

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 11/146 (7%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           +S   +K+ +D+M  ++N  +   +       G+GLAA Q+ V  ++  + +        
Sbjct: 26  LSEADQKLANDMMEYLENSQDPELAKKYGLRAGVGLAAPQVDVSEQMAAVLVPSENEDDE 85

Query: 72  PM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAFITVRYMDCNAQHQIIY 125
           P+   V INP II+ S       EG  CLS+  D    V R   IT+RY +   + + I 
Sbjct: 86  PVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGYVIRHDRITLRYYNMAGEEKKIR 145

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
                A   QHE+DHL+GILF DH++
Sbjct: 146 LKNYPAIVCQHEIDHLHGILFYDHIN 171


>gi|169404547|pdb|2OS0|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E.
           Faecalis And S. Pyogenes
          Length = 188

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 20/162 (12%)

Query: 11  DPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYR 57
           +P LR V+  +         ++  D++  + N  + + + +      +GLAA Q+ +  R
Sbjct: 12  NPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGLAAPQLDISKR 71

Query: 58  LVVIDL-QDHAHRKNP---MVFINPKIITFS-DDFSVYQ-EGCLSIP-DYRADVKRSAFI 110
           ++ + +  +    + P    V  NPKI++ S  D  + + EGCLS+  D    V R   I
Sbjct: 72  IIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKI 131

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y D   +   +      A  +QHE+DH+NGI+F DH+++
Sbjct: 132 TVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINK 173


>gi|75766232|pdb|2AI7|A Chain A, S.Pneumoniae Polypeptide Deformylase Complexed With Sb-
           485345
 gi|75766238|pdb|2AIA|A Chain A, S.Pneumoniae Pdf Complexed With Sb-543668
          Length = 203

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 119

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 177 HINGIMFYDRINE 189


>gi|75766239|pdb|2AIE|P Chain P, S.Pneumoniae Polypeptide Deformylase Complexed With Sb-
           505684
          Length = 203

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 119

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 177 HINGIMFYDRINE 189


>gi|104773326|ref|YP_618306.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422407|emb|CAI96944.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 143

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 17/147 (11%)

Query: 8   IFPDPILRRVSRPIEKINSD----IMNLIDNMLEVMYSTDGI----GLAAVQIGVLYRLV 59
           I  DP+   +S+P  K  +       +L+D +L    S DG+    GLAA  IGV   ++
Sbjct: 6   IIHDPL--SLSQPAAKAAASDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMIGVNKAII 63

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++         P+V +NP I+  S  + + +EGCLS+P  R    R   ITV+Y D + 
Sbjct: 64  AVNA-----GFLPIVMLNPTIVKRSGHY-LAEEGCLSLPGERP-ADRYEEITVKYQDMDL 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +       G +A  +QHE+DH  G L 
Sbjct: 117 EEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|300811352|ref|ZP_07091849.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123463|ref|YP_004033722.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|300497716|gb|EFK32741.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312280026|gb|ADQ60745.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 184

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 23/162 (14%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIG---V 54
           DP+LR+V++ +    SD    L D+M+E + ++             G+GLAA Q+G    
Sbjct: 12  DPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAPQVGEGVS 71

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110
           +  L+V D +     K   V++NP+II+ S   +   EG  CLS+ D   D  V R   +
Sbjct: 72  MAALLVPDDKGEIIFKE--VYVNPEIISESVRKTCLGEGEGCLSV-DKVIDGYVPRPNKV 128

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           TV Y   + + + I   G  A    HE+DHLNG LF D +++
Sbjct: 129 TVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINK 170


>gi|307708362|ref|ZP_07644829.1| peptide deformylase [Streptococcus mitis NCTC 12261]
 gi|307615808|gb|EFN95014.1| peptide deformylase [Streptococcus mitis NCTC 12261]
          Length = 136

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        P+V  NP +++ S+     +EGCLS+   R   
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPVVMFNPVLLS-SEGVYETEEGCLSLTGVRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR   I V Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  KRYEIIRVAYCDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|227877349|ref|ZP_03995420.1| peptide deformylase [Lactobacillus crispatus JV-V01]
 gi|256848717|ref|ZP_05554151.1| peptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|295692713|ref|YP_003601323.1| peptide deformylase [Lactobacillus crispatus ST1]
 gi|227863017|gb|EEJ70465.1| peptide deformylase [Lactobacillus crispatus JV-V01]
 gi|256714256|gb|EEU29243.1| peptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|295030819|emb|CBL50298.1| Peptide deformylase [Lactobacillus crispatus ST1]
          Length = 184

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 26/172 (15%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54
           DP+LR+V++P+    SD    L D+M++ +  +             G+GLAA Q+G    
Sbjct: 12  DPVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111
           +  L+V D Q     K   V++NP+I++ S   +   EG  CLS+ +     V R   +T
Sbjct: 72  MAALLVPDDQGKIIFKE--VYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 129

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           + Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQDPFALKEDTV 181


>gi|307709244|ref|ZP_07645702.1| peptide deformylase [Streptococcus mitis SK564]
 gi|307619827|gb|EFN98945.1| peptide deformylase [Streptococcus mitis SK564]
          Length = 203

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMY-NPKIVSHSV 119

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 177 HINGIMFYDRINE 189


>gi|301794480|emb|CBW36919.1| polypeptide deformylase [Streptococcus pneumoniae INV104]
 gi|332203286|gb|EGJ17354.1| peptide deformylase [Streptococcus pneumoniae GA47901]
          Length = 203

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEGIMY-NPKIVSHSV 119

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEGCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 177 HINGIMFYDRINE 189


>gi|308180961|ref|YP_003925089.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046452|gb|ADN98995.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 186

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 11/146 (7%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           +S   +K+ +D+M  ++N  +   +       G+GLAA Q+ V  ++  + +        
Sbjct: 26  LSEADQKLANDMMEYLENSQDPELAKKYGLRAGVGLAAPQVDVSEQMAAVLVPSENEDDE 85

Query: 72  PM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAFITVRYMDCNAQHQIIY 125
           P+   V INP II+ S       EG  CLS+  D    V R   IT+RY +   + + I 
Sbjct: 86  PVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGYVIRHDRITLRYYNMAGEEKKIR 145

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
                A   QHE+DHL+GILF DH++
Sbjct: 146 LKNYPAIVCQHEIDHLHGILFYDHIN 171


>gi|322386870|ref|ZP_08060494.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
 gi|321269152|gb|EFX52088.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
          Length = 136

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 9/139 (6%)

Query: 8   IFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           I  DP  L++ S P  K++  +   + + L + +    +GLAA  IG   R+++      
Sbjct: 5   IVKDPFFLQQKSVPATKVDLFLAQDLQDTL-LAHRESCVGLAANMIGSQKRVIIF----- 58

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            +   PMV  NP +I  S  +   +EGCLS+   R  + R   ITV Y+D N   + I  
Sbjct: 59  MYVMLPMVMFNPVLIQKSGPYET-EEGCLSLAGSRPTI-RYQKITVEYLDQNWLKKTITL 116

Query: 127 DGLLATCLQHELDHLNGIL 145
           +   A   QHELDHL GIL
Sbjct: 117 EDFPAQICQHELDHLEGIL 135


>gi|322388152|ref|ZP_08061756.1| peptide deformylase [Streptococcus infantis ATCC 700779]
 gi|321140824|gb|EFX36325.1| peptide deformylase [Streptococcus infantis ATCC 700779]
          Length = 203

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 17/132 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNPM-----VFINPKIITFS-D 85
           M E +    G+GLAA Q+ +  R++ +   ++ +             V  NPKI++ S  
Sbjct: 61  MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQ 120

Query: 86  DFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           D ++ + EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+DH
Sbjct: 121 DAALGEGEGCLSVDRTVPGY---VIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDH 177

Query: 141 LNGILFIDHLSR 152
           LNG++F D ++ 
Sbjct: 178 LNGVMFYDRINE 189


>gi|299822499|ref|ZP_07054385.1| peptide deformylase [Listeria grayi DSM 20601]
 gi|299816028|gb|EFI83266.1| peptide deformylase [Listeria grayi DSM 20601]
          Length = 182

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI---- 97
           G+GLAA Q+ VL R++ I ++D   R       NPKI + S  +      EGCLS+    
Sbjct: 58  GVGLAAPQLAVLKRIIAIHIEDE-DRTYSYTLYNPKIRSHSVQEACLAGGEGCLSVDREV 116

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           P +   V R   +T+   D +     +      A  +QHE+DHLNG++F DH++
Sbjct: 117 PGF---VVRKERVTIEAFDEDGNPIKLRLKSYPAIVVQHEIDHLNGVMFYDHIN 167


>gi|311745501|ref|ZP_07719286.1| peptide deformylase [Algoriphagus sp. PR1]
 gi|126578054|gb|EAZ82274.1| peptide deformylase [Algoriphagus sp. PR1]
          Length = 161

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           G G+AA Q+G++ R+  ++L        P + +NP++   S++     + C+S P     
Sbjct: 51  GRGIAAPQLGIMKRMFYLNLD------KPYIILNPELKNPSEEMFELWDDCMSFPKLLVK 104

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           V+R   +T+ Y D N   Q     G  +  +QHE DHL+G+L
Sbjct: 105 VRRHQSLTLSYRDQNWTLQEWKVSGENSELIQHEYDHLDGVL 146


>gi|300361479|ref|ZP_07057656.1| peptide deformylase [Lactobacillus gasseri JV-V03]
 gi|300354098|gb|EFJ69969.1| peptide deformylase [Lactobacillus gasseri JV-V03]
          Length = 184

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 17/159 (10%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P+LR+V++P+   +  +   L D M++ + ++             G+GLAA Q+G   +
Sbjct: 12  NPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGKSIQ 71

Query: 58  LVVIDL-QDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSI-PDYRADVKRSAFITVR 113
           +  + +  D        VF+NPKI++ S   +     EGCLS+  D    V R   + + 
Sbjct: 72  MAALLVPNDKGEIIFKEVFVNPKILSESVRKACLAEGEGCLSVDKDIEGYVPRPDKLKIH 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 132 YYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|171778809|ref|ZP_02919871.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282455|gb|EDT47879.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 204

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 12/128 (9%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--D 85
           E M    G+GLAA Q+ V  R++ + + +   +  NP         V  NPK++  S  D
Sbjct: 63  EKMGLRGGVGLAAPQLNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQD 122

Query: 86  DFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
                 EGCLS+       V R + +TV Y D N +   I   G  +  +QHE+DH NGI
Sbjct: 123 AALADGEGCLSVDRVVEGYVVRHSRVTVEYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGI 182

Query: 145 LFIDHLSR 152
           +F D ++ 
Sbjct: 183 MFYDRINE 190


>gi|306829860|ref|ZP_07463047.1| peptide deformylase [Streptococcus mitis ATCC 6249]
 gi|304427871|gb|EFM30964.1| peptide deformylase [Streptococcus mitis ATCC 6249]
          Length = 136

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IG   R+++ +L        PMV  NP ++++   +   +EGCLS+   R   
Sbjct: 42  VGLAANMIGEQKRVIIFNLG-----LVPMVMFNPILLSYKGPYET-EEGCLSLTGVRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
            R   I V Y D   Q Q I   G  A   QHELDHL G
Sbjct: 95  TRYETIKVSYRDSKWQEQTITLTGFPAQICQHELDHLEG 133


>gi|229821583|ref|YP_002883109.1| Peptide deformylase [Beutenbergia cavernae DSM 12333]
 gi|229567496|gb|ACQ81347.1| Peptide deformylase [Beutenbergia cavernae DSM 12333]
          Length = 217

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 29/188 (15%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM-----NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           P+V    P+LR    P  +   ++       L++ M   M +  G+GLAA QIG+   + 
Sbjct: 20  PIVSAGAPVLRA---PAARYGGELGAERFHRLLEAMRVTMRTAPGVGLAAPQIGLPLAIA 76

Query: 60  VI-------DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           VI       D    A  + P+ F   +NP       +   + EGCLS+P Y A   R   
Sbjct: 77  VIEDPGVDDDATAAARERVPVAFRVLVNPTYTPAGPERVSFYEGCLSVPGYVAVRARWRR 136

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID-----------HLSRLKRDMI 158
           + +   D           G  A  +QHE+DHL G L++D           H  R   + +
Sbjct: 137 VRLLAADEAGNAVAEELAGWPARIVQHEVDHLAGELYLDAAAPRSLASDAHAPRWASEAV 196

Query: 159 TKKMSKLV 166
            +  + ++
Sbjct: 197 PRGAATVL 204


>gi|322392208|ref|ZP_08065669.1| peptide deformylase [Streptococcus peroris ATCC 700780]
 gi|321144743|gb|EFX40143.1| peptide deformylase [Streptococcus peroris ATCC 700780]
          Length = 203

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 19/131 (14%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS--D 85
           E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S  D
Sbjct: 63  EKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPTEAYSMQAVMY-NPKIVSHSVQD 121

Query: 86  DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
                 EGCLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+DH 
Sbjct: 122 AALAEGEGCLSVDREVPGY---VIRHARVTVEYFDKDGEKHRIKLKGYNSIVVQHEIDHT 178

Query: 142 NGILFIDHLSR 152
           NG++F D ++ 
Sbjct: 179 NGVMFYDRINE 189


>gi|289645164|ref|ZP_06477181.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca
           glomerata]
 gi|289505026|gb|EFD26107.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca
           glomerata]
          Length = 529

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 13  ILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           IL + +RP +         ++ +++ + I+ +  +     G+G+AA Q+G+     ++  
Sbjct: 363 ILSKPARPFDLPAEAEDARRVVAELSSAIERVSALHTFGKGMGIAAPQVGINRAAAIVRT 422

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D     + +  +NP +I  S +     EGCLS  D R  V R   + V + D +   +I
Sbjct: 423 VD----GDTITLLNPTVIEASPETDEQYEGCLSFFDVRGLVPRPLTLHVEHADIDGTRRI 478

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150
           I  +  LA  + HE+DHL+G L+ D +
Sbjct: 479 IAFEKGLARLVAHEIDHLDGHLYTDKM 505


>gi|152991786|ref|YP_001357507.1| hypothetical protein SUN_0190 [Sulfurovum sp. NBC37-1]
 gi|151423647|dbj|BAF71150.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 273

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV+K LVI+PD  +   S  +   N  + +++++M + M + D   +AA+QI   Y +++
Sbjct: 1   MVQK-LVIYPDDRMNCTSTDVRSFNQTLWDVLEDMRDTMLAHDIKAMAAMQIAYPYNIIL 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   +  H      +INP+II   D F   +E  +  PD    + R   I + Y D N Q
Sbjct: 60  IKEGEEYHE-----YINPRIIKNEDLFDS-EESSIHYPDVTVTIPRYGKIKLVYEDRNGQ 113

Query: 121 -HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            H     D  LA  LQ ++D   G   +D + +  R+ I
Sbjct: 114 VHYEDIEDRELAATLQRKIDITFGGNILDKVDKNTREKI 152


>gi|326803937|ref|YP_004321755.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650536|gb|AEA00719.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 192

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 22/164 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54
           +P+L R +  I   +N        +M+E +Y++             G+GLAA Q+G+   
Sbjct: 12  NPVLHREADTITFPLNEAQKQAAHDMMEYLYNSQDEEKGPELGLRAGVGLAAPQVGIGEK 71

Query: 55  LYRLVVIDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEG--CLSIPD-YRADVKRSA 108
           +  L+V +++D    +      V +NPKII+ S +    +EG  CLS+ D     V R A
Sbjct: 72  MIALLVPNIEDPDSDEEIILEGVMVNPKIISHSVEKVCLREGEGCLSVDDDVSGYVPRYA 131

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            IT+ Y D    H      G  A  LQHE+DHL+G L+ + +++
Sbjct: 132 RITITYDDLEGNHFKKRFKGYPAIVLQHEIDHLDGHLYYERINK 175


>gi|300768287|ref|ZP_07078192.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494351|gb|EFK29514.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 186

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 11/146 (7%)

Query: 17  VSRPIEKINSDIMNLIDNM----LEVMYS-TDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           +S   +K+ +D+M  ++N     L   Y    G+GLAA Q+ V  ++  + +        
Sbjct: 26  LSEADQKLANDMMEYLENSQNPELAKKYGLRAGVGLAAPQVDVSEQMAAVLVPSENEDDE 85

Query: 72  PM---VFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRSAFITVRYMDCNAQHQIIY 125
           P+   V INP II+ S       EG  CLS+  D    V R   IT+RY +   + + I 
Sbjct: 86  PVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGYVIRHDRITLRYYNMAGEEKKIR 145

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
                A   QHE+DHL+GILF DH++
Sbjct: 146 LKNYPAIVCQHEIDHLHGILFYDHIN 171


>gi|332522419|ref|ZP_08398671.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176]
 gi|332313683|gb|EGJ26668.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176]
          Length = 204

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 16/142 (11%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITF 83
           M E +    G+GLAA Q+ +  R++ +   +++D     NP         V  NPK++  
Sbjct: 61  MAEKLDLRGGVGLAAPQLDISKRIIAVLVPNMEDS--EGNPPKEAYSLQEVMYNPKVVAH 118

Query: 84  S--DDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           S  D      EGCLS+       V R + +TV Y + + + Q I   G  A  +QHE+DH
Sbjct: 119 SVQDAALAEGEGCLSVDRPIEGYVVRHSRVTVDYYNKDGEKQRIKLKGYNAIVVQHEIDH 178

Query: 141 LNGILFIDHLSRLKRDMITKKM 162
           +NGI+F D +++     I + M
Sbjct: 179 INGIMFYDRINQADPFAINEGM 200


>gi|308235345|ref|ZP_07666082.1| peptide deformylase [Gardnerella vaginalis ATCC 14018]
 gi|311114315|ref|YP_003985536.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
 gi|310945809|gb|ADP38513.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
          Length = 217

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 10/148 (6%)

Query: 11  DPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +P+LR+  V+   +   + +  LI  M   M    G+GLAA QIG+   + V++      
Sbjct: 36  EPVLRQRTVAYDGQLTRATLNKLISLMHSTMLDAPGVGLAAPQIGLGLAIAVVEDHVRDD 95

Query: 69  RKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +P           INP           + EGCLS+  Y+A  +R   I   + D + +
Sbjct: 96  ADDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVAGYQAVRQRWLDIQATWQDEDGK 155

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                  G  A   QHE DHL G L+ID
Sbjct: 156 QHSERLHGWPARIFQHETDHLRGELYID 183


>gi|225550917|ref|ZP_03771866.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225380071|gb|EEH02433.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 198

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 20/167 (11%)

Query: 5   PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYST--------DGIGLAA 49
           P  IF  P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA
Sbjct: 18  PQWIFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAA 77

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-VKR 106
            Q+G       I   D A +++  + INP II  S + +     EGCLS+ D R+  V R
Sbjct: 78  NQVGWNKCATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIR 136

Query: 107 SAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152
           +  + V+  D  ++  I     G++A C+QHE+ HL+  L+ D++++
Sbjct: 137 NKKVHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQ 183


>gi|313889599|ref|ZP_07823243.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122026|gb|EFR45121.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 204

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 16/142 (11%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITF 83
           M E +    G+GLAA Q+ +  R++ +   +++D     NP         V  NPKI+  
Sbjct: 61  MAEKLDLRGGVGLAAPQLDISKRVIAVLVPNMEDS--EGNPPKEAYSLQEVMYNPKIVAH 118

Query: 84  S--DDFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           S  D      EGCLS+       V R + +TV Y + + + Q I   G  A  +QHE+DH
Sbjct: 119 SVQDAALAEGEGCLSVDRLIEGYVVRHSRVTVDYYNKDGEKQRIKLKGYNAIVVQHEIDH 178

Query: 141 LNGILFIDHLSRLKRDMITKKM 162
           +NGI+F D ++      I + M
Sbjct: 179 INGIMFYDRINEADPFAINEGM 200


>gi|116334552|ref|YP_796079.1| peptide deformylase [Lactobacillus brevis ATCC 367]
 gi|116099899|gb|ABJ65048.1| N-formylmethionyl-tRNA deformylase [Lactobacillus brevis ATCC 367]
          Length = 136

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++V+D+        P+  INP+I   +  +   QEGCLS+   R   
Sbjct: 42  VGMAANMIGVNRRIIVVDMGIL-----PVAMINPEITKMAGPYDT-QEGCLSLSGERP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V +++ N Q Q     G +A  +QHE++H NGIL
Sbjct: 95  HRFKTIDVTFLNQNFQKQRQTFTGFVAQIIQHEVEHCNGIL 135


>gi|222151046|ref|YP_002560200.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402]
 gi|222120169|dbj|BAH17504.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402]
          Length = 136

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 64/116 (55%), Gaps = 4/116 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K L+   + +L R  + + + ++ +  LI ++ + ++  +G+G+AA QIGV  ++ ++D+
Sbjct: 3   KQLIEEQNSLLHREVKDVTQFDASLKALIKDLEDTLFHHNGVGIAAPQIGVDLKVALVDM 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +        +  +NPKI+++S++     EGCLSIP     V RS  I +   D + 
Sbjct: 63  E----ADGILQLVNPKIVSYSEETESDVEGCLSIPGVFGLVDRSIEIVIEANDLDG 114


>gi|308070801|ref|YP_003872406.1| peptide deformylase (PDF) [Paenibacillus polymyxa E681]
 gi|305860080|gb|ADM71868.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681]
          Length = 193

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 17/167 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTD------------GIGL 47
           ++ K +V   +PILR    P+   ++ D +  +  ML+ + ++             G+GL
Sbjct: 9   LLTKDIVREGEPILRTKVDPVCLPLSEDDLQQMQWMLDYLKNSQNEELAGRYDLRPGVGL 68

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRAD-V 104
           +A Q+G+  R+  I  +D   +       NPK+++ S      +  EGCLS+  Y A  V
Sbjct: 69  SANQVGLNKRMCAIYYED-GDKTVEYALFNPKLVSHSTSMIYLEQGEGCLSVDRYVAGYV 127

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   I ++    +   +++   G  A  +QHE+DHL+GI+F D ++
Sbjct: 128 PRYEKIRIKATLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRIN 174


>gi|24378660|ref|NP_720615.1| peptide deformylase [Streptococcus mutans UA159]
 gi|39930891|sp|Q8DWC2|DEF_STRMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|24376521|gb|AAN57921.1|AE014866_3 putative polypeptide deformylase [Streptococcus mutans UA159]
          Length = 204

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 25/166 (15%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58
           P LR V++ +   +N D + L + ML+ + ++             G+GLAA Q+ +  R+
Sbjct: 25  PTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRI 84

Query: 59  VVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY-RADVKR 106
           + + + +   +  NP         V  NP+II  S  D      EGCLS+       V R
Sbjct: 85  IAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGCLSVDRVVEGYVIR 144

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + +T+ Y D N+  + +   G  +  +QHE+DH NGI+F D ++ 
Sbjct: 145 HSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINE 190


>gi|309807220|ref|ZP_07701192.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b]
 gi|308166358|gb|EFO68565.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b]
          Length = 184

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56
           +LR+V + +   +N     L ++M++ + ++             G+GLAA Q+G    + 
Sbjct: 14  VLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQMA 73

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113
            L+V D Q +   K    F+NPKII+ S   +   EG  CLS+  D +  V R+  + ++
Sbjct: 74  ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 132 YQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|315222331|ref|ZP_07864237.1| peptide deformylase [Streptococcus anginosus F0211]
 gi|315188664|gb|EFU22373.1| peptide deformylase [Streptococcus anginosus F0211]
          Length = 204

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 18/133 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ + + +   ++ NP         V  N K++  S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKVVAHSV 120

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D   +   I   G  +  +QHE+D
Sbjct: 121 QDAALAEGEGCLSVDREVPGY---VVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEID 177

Query: 140 HLNGILFIDHLSR 152
           H NGI+F D ++ 
Sbjct: 178 HTNGIMFYDRINE 190


>gi|259500700|ref|ZP_05743602.1| peptide deformylase [Lactobacillus iners DSM 13335]
 gi|312871379|ref|ZP_07731474.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a]
 gi|259168084|gb|EEW52579.1| peptide deformylase [Lactobacillus iners DSM 13335]
 gi|311093032|gb|EFQ51381.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a]
          Length = 181

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56
           +LR+V + +   +N     L ++M++ + ++             G+GLAA Q+G    + 
Sbjct: 11  VLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQMA 70

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113
            L+V D Q +   K    F+NPKII+ S   +   EG  CLS+  D +  V R+  + ++
Sbjct: 71  ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 128

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 129 YQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 167


>gi|194396894|ref|YP_002038089.1| peptide deformylase [Streptococcus pneumoniae G54]
 gi|238690834|sp|B5E5U9|DEF_STRP4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194356561|gb|ACF55009.1| peptide deformylase [Streptococcus pneumoniae G54]
          Length = 203

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSD 85
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 61  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 119

Query: 86  DFSVYQEG--CLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
             +   EG  CLS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 120 QDAALGEGEXCLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 176

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 177 HINGIMFYDRINE 189


>gi|329921309|ref|ZP_08277747.1| peptide deformylase [Lactobacillus iners SPIN 1401G]
 gi|328934601|gb|EGG31105.1| peptide deformylase [Lactobacillus iners SPIN 1401G]
          Length = 184

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56
           +LR+V + +   +N     L ++M++ + ++             G+GLAA Q+G    + 
Sbjct: 14  VLRQVGKELTFPLNDKYKQLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQMA 73

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113
            L+V D Q +   K    F+NPKII+ S   +   EG  CLS+  D +  V R+  + ++
Sbjct: 74  ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 132 YQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|295425019|ref|ZP_06817727.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
 gi|295065294|gb|EFG56194.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
          Length = 137

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 10/140 (7%)

Query: 7   VIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +I     L+R S+P  K + +I ++L D +  +      +GLAA  IG   R++   +  
Sbjct: 6   IIHDQMFLQRKSQPATKADLNIAIDLRDTL--IAKRNLALGLAANMIGKDKRIIAFYVGP 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A     MV INP+II   + + + +EGCLS+   R+  KR   I V +   N +++   
Sbjct: 64  LA-----MVMINPRIIDKEERY-ITKEGCLSLSGERS-TKRYKKIRVSFQTMNFENRTQE 116

Query: 126 ADGLLATCLQHELDHLNGIL 145
            DGL +  +QHE+DH +GIL
Sbjct: 117 FDGLTSEVIQHEIDHCDGIL 136


>gi|302191390|ref|ZP_07267644.1| peptide deformylase [Lactobacillus iners AB-1]
 gi|309809281|ref|ZP_07703150.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D]
 gi|312872368|ref|ZP_07732438.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1]
 gi|312873953|ref|ZP_07733989.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d]
 gi|312875523|ref|ZP_07735526.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b]
 gi|315653465|ref|ZP_07906386.1| peptide deformylase [Lactobacillus iners ATCC 55195]
 gi|325911485|ref|ZP_08173896.1| peptide deformylase [Lactobacillus iners UPII 143-D]
 gi|325912854|ref|ZP_08175232.1| peptide deformylase [Lactobacillus iners UPII 60-B]
 gi|308170394|gb|EFO72418.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D]
 gi|311089034|gb|EFQ47475.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b]
 gi|311090502|gb|EFQ48910.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d]
 gi|311092191|gb|EFQ50565.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1]
 gi|315489156|gb|EFU78797.1| peptide deformylase [Lactobacillus iners ATCC 55195]
 gi|325476685|gb|EGC79840.1| peptide deformylase [Lactobacillus iners UPII 143-D]
 gi|325477847|gb|EGC80981.1| peptide deformylase [Lactobacillus iners UPII 60-B]
          Length = 184

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56
           +LR+V + +   +N     L ++M++ + ++             G+GLAA Q+G    + 
Sbjct: 14  VLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQMA 73

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113
            L+V D Q +   K    F+NPKII+ S   +   EG  CLS+  D +  V R+  + ++
Sbjct: 74  ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 132 YQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|327488979|gb|EGF20775.1| peptide deformylase [Streptococcus sanguinis SK1058]
          Length = 136

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 9/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           + +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V
Sbjct: 12  LQQPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVV 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP + + S  +   +E CLS+   R   +R   IT+ Y+D + Q Q I   GL A   
Sbjct: 67  MFNPVLRSKSGPYQT-EESCLSLVGSRP-TQRYQEITIDYLDKHWQQQTITLKGLPAQIC 124

Query: 135 QHELDHLNGIL 145
           QHELDHL GI+
Sbjct: 125 QHELDHLEGII 135


>gi|23396567|sp|Q92JI7|DEF2_RICCN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
          Length = 202

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95
           GLAA QIG+   +++  + + A  K             ++INP       D     EGC 
Sbjct: 62  GLAAPQIGISKCIIIFAVHEDAELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCF 121

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           S+ +    V R   I     D N       A+G LA  +QHE+DHLNG +F+D+++  K
Sbjct: 122 SVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKK 180


>gi|260101766|ref|ZP_05752003.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
 gi|260084410|gb|EEW68530.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
          Length = 181

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 28/173 (16%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           DP+LR+V++P+    SD    L ++M+E + ++             G+GLAA Q+G   +
Sbjct: 9   DPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 68

Query: 58  LVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFI 110
           +  + + D    K  ++F    +NP+I++ S   +   EG  CLS+       V R   +
Sbjct: 69  MAALLVPDD---KGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPRPDKL 125

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           T+ Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 126 TIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKEDTV 178


>gi|111225848|ref|YP_716642.1| putative polypeptide deformylase [Frankia alni ACN14a]
 gi|111153380|emb|CAJ65136.1| hypothetical protein; putative Polypeptide deformylase [Frankia
           alni ACN14a]
          Length = 550

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 15/160 (9%)

Query: 1   MVKKPLVIFPDPILRRVSR----PIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQ 51
           M    +V   DP L + +R    P+E     ++ +++ + ++ +  +     G+G+AA Q
Sbjct: 373 MAAAGIVQVGDPSLHQPARSFELPVEAEDARRVVAELSSAMERVSALHTFGKGMGIAAPQ 432

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IG+     ++   D     + +  +NP++I    +     EGCLS  D R  V RS  + 
Sbjct: 433 IGINRAAAIVRSAD----GDILTLLNPRVIESVPESDEQYEGCLSFFDVRGIVPRSLELH 488

Query: 112 VRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHL 150
           V + D + +  I +Y  GL A  + HE+DHL+G L+ D +
Sbjct: 489 VEHTDTSGRRHITVYRQGL-ARLVAHEIDHLHGRLYTDRM 527


>gi|261367618|ref|ZP_05980501.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
 gi|282570406|gb|EFB75941.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
          Length = 136

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 9/114 (7%)

Query: 34  NMLEVM-YSTDG-IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ 91
           ++LE + Y  DG +G+AA  IGV  R++  D +         V  NP+I+  S  +   +
Sbjct: 29  DLLETLEYHKDGCVGMAANMIGVNKRIIAFDNEGKYQ-----VMFNPEILRRSGPYEA-E 82

Query: 92  EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           EGCLS+   R  VKR   I V++ +   Q +I    G  A  +QHE+DH  GI+
Sbjct: 83  EGCLSLTGVRP-VKRWKTIKVQWQNEKFQQRIKNFTGWTAEIIQHEIDHCEGII 135


>gi|306832702|ref|ZP_07465839.1| peptide deformylase [Streptococcus bovis ATCC 700338]
 gi|304425158|gb|EFM28287.1| peptide deformylase [Streptococcus bovis ATCC 700338]
          Length = 204

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 12/138 (8%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--D 85
           E M    G+GLAA Q+ +  R++ + + +   +  NP         V  NPK++  S  D
Sbjct: 63  EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDKDGNPPKDAYSLQEVMYNPKVVAHSVQD 122

Query: 86  DFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
                 EGCLS+       V R + +TV Y D N +   I   G  +  +QHE+DH NGI
Sbjct: 123 AALADGEGCLSVDRVVEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGI 182

Query: 145 LFIDHLSRLKRDMITKKM 162
           +F D +       I K M
Sbjct: 183 MFYDRIDEKNPFAIKKGM 200


>gi|34580961|ref|ZP_00142441.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|28262346|gb|EAA25850.1| polypeptide deformylase [Rickettsia sibirica 246]
          Length = 224

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95
           GLAA QIG+   +++  + + A  K             ++INP       D     EGC 
Sbjct: 84  GLAAPQIGISKCIIIFAVHEDAELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCF 143

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           S+ +    V R   I     D N       A+G LA  +QHE+DHLNG +F+D+++  K
Sbjct: 144 SVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKK 202


>gi|15892003|ref|NP_359717.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
 gi|157827954|ref|YP_001494196.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932642|ref|YP_001649431.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|238650519|ref|YP_002916371.1| peptide deformylase [Rickettsia peacockii str. Rustic]
 gi|15619118|gb|AAL02618.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
 gi|157800435|gb|ABV75688.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907729|gb|ABY72025.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|238624617|gb|ACR47323.1| peptide deformylase [Rickettsia peacockii str. Rustic]
          Length = 224

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95
           GLAA QIG+   +++  + + A  K             ++INP       D     EGC 
Sbjct: 84  GLAAPQIGISKCIIIFAVHEDAELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCF 143

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           S+ +    V R   I     D N       A+G LA  +QHE+DHLNG +F+D+++  K
Sbjct: 144 SVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKK 202


>gi|309803948|ref|ZP_07698031.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d]
 gi|308163950|gb|EFO66214.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d]
          Length = 184

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56
           +LR+V + +   +N     L ++M++ + ++             G+GLAA Q+G    + 
Sbjct: 14  VLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQMA 73

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113
            L+V D Q +   K    F+NPKII+ S   +   EG  CLS+  D +  V R+  + ++
Sbjct: 74  ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 132 YQTVDGEQRQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|315613522|ref|ZP_07888429.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
 gi|315314213|gb|EFU62258.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
          Length = 136

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++ +L        PMV  NP +++    +   +EGCLS+   R   
Sbjct: 42  VGLAANMIGVQKRVIIFNLG-----LVPMVMFNPILLSNKGPYET-EEGCLSLTGVRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
            R   ITV Y D   Q   I   G  A   QHELDHL G
Sbjct: 95  TRYETITVSYRDSKWQELTITLTGFPAQICQHELDHLEG 133


>gi|319946246|ref|ZP_08020486.1| peptide deformylase [Streptococcus australis ATCC 700641]
 gi|319747628|gb|EFV99881.1| peptide deformylase [Streptococcus australis ATCC 700641]
          Length = 204

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 18/132 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS- 84
           M E +    G+GLAA Q+ +  R++ + + +      NP         V  NPKI++ S 
Sbjct: 61  MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNPEDEEGNPPKEAYSIQEVMYNPKIVSHSV 120

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y D   +   I   G  +  +QHE+D
Sbjct: 121 QDAALGDGEGCLSVDRNVPGY---VVRHARVTVDYYDKTGEKHRIKLKGYNSIVVQHEID 177

Query: 140 HLNGILFIDHLS 151
           H+NG++F D ++
Sbjct: 178 HINGVMFYDRIN 189


>gi|255525142|ref|ZP_05392086.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
 gi|296188109|ref|ZP_06856501.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255511196|gb|EET87492.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
 gi|296047235|gb|EFG86677.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 136

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 12/139 (8%)

Query: 12  PILRRV---SRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDH 66
           PI++ V    +  EK   D M ++D++++ + +   + +GLA   IGV  R++V  +   
Sbjct: 4   PIVKDVLFLGQKSEKATKDDMAVVDDLMDTLKANLQNCVGLAGNMIGVKKRILVFTV--- 60

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
           A+   PM  INP I+     +   +E CLS+   R   KR   I V Y+D N + Q    
Sbjct: 61  ANLIVPM--INPVILKKEKPYET-EESCLSLIGVRK-TKRYEMIEVEYLDRNFKSQKQVF 116

Query: 127 DGLLATCLQHELDHLNGIL 145
            G  A  +QHE+DH  GI+
Sbjct: 117 TGFTAQIIQHEMDHFEGII 135


>gi|26554017|ref|NP_757951.1| peptide deformylase [Mycoplasma penetrans HF-2]
 gi|32363151|sp|Q8EVJ8|DEF_MYCPE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|26454025|dbj|BAC44355.1| polypeptide deformylase [Mycoplasma penetrans HF-2]
          Length = 186

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DY 100
           GIG+AA+Q+G   +++ I L D  + ++  +  NPKII  S    +    EGCLS+  D+
Sbjct: 62  GIGIAAIQLGCPKKIIYIHLDD-KNGEHKYLMANPKIIKESTSKMYLKNGEGCLSVKKDH 120

Query: 101 RADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    R + + V+ +D     +I + A  LLA C QHE+DH N   + + ++ 
Sbjct: 121 KGLSIRKSIVWVKGIDLFTNKEIEVKATDLLAACFQHEVDHNNNKFYYNRINE 173


>gi|161507335|ref|YP_001577289.1| peptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|172048229|sp|A8YUR0|DEF_LACH4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|160348324|gb|ABX26998.1| Peptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|328468535|gb|EGF39537.1| peptide deformylase [Lactobacillus helveticus MTCC 5463]
          Length = 184

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 28/173 (16%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           DP+LR+V++P+    SD    L ++M+E + ++             G+GLAA Q+G   +
Sbjct: 12  DPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71

Query: 58  LVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFI 110
           +  + + D    K  ++F    +NP+I++ S   +   EG  CLS+       V R   +
Sbjct: 72  MAALLVPDD---KGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPRPDKL 128

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           T+ Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 129 TIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKEDTV 181


>gi|22538033|ref|NP_688884.1| peptide deformylase [Streptococcus agalactiae 2603V/R]
 gi|25011922|ref|NP_736317.1| peptide deformylase [Streptococcus agalactiae NEM316]
 gi|76788216|ref|YP_330458.1| peptide deformylase [Streptococcus agalactiae A909]
 gi|76797863|ref|ZP_00780126.1| peptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77405647|ref|ZP_00782735.1| polypeptide deformylase [Streptococcus agalactiae H36B]
 gi|77408421|ref|ZP_00785160.1| polypeptide deformylase [Streptococcus agalactiae COH1]
 gi|77411534|ref|ZP_00787877.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|77414207|ref|ZP_00790370.1| polypeptide deformylase [Streptococcus agalactiae 515]
 gi|39930892|sp|Q8DXF6|DEF_STRA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|39930894|sp|Q8E378|DEF_STRA3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123601213|sp|Q3JZ45|DEF_STRA1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22534936|gb|AAN00757.1|AE014277_5 polypeptide deformylase [Streptococcus agalactiae 2603V/R]
 gi|24413464|emb|CAD47542.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563273|gb|ABA45857.1| peptide deformylase [Streptococcus agalactiae A909]
 gi|76586766|gb|EAO63261.1| peptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77159733|gb|EAO70881.1| polypeptide deformylase [Streptococcus agalactiae 515]
 gi|77162388|gb|EAO73356.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|77172944|gb|EAO76074.1| polypeptide deformylase [Streptococcus agalactiae COH1]
 gi|77175720|gb|EAO78501.1| polypeptide deformylase [Streptococcus agalactiae H36B]
          Length = 204

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%)

Query: 11  DPILRRVSRPI--------EKINSDIMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57
           +P LR+V+  +        E +   +M  + +     M E +    G+GLAA Q+ +  R
Sbjct: 24  NPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKR 83

Query: 58  LVVI---DLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDY 100
           ++ +   +++D   + NP         V  NPK+++ S  D      EGCLS+    P Y
Sbjct: 84  IIAVLVPNVEDA--QGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY 141

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +T+ Y D   +   +   G  +  +QHE+DH++GI+F D ++ 
Sbjct: 142 ---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190


>gi|300173110|ref|YP_003772276.1| peptide deformylase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887489|emb|CBL91457.1| Peptide deformylase [Leuconostoc gasicomitatum LMG 18811]
          Length = 192

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 44  GIGLAAVQIGVLYRLVVI---DLQDHAHRKNPM---VFINPKIITFSDDFSVYQ--EGCL 95
           G+GLAA Q+    R+  I    L  H   + P       NP II+ S         EGCL
Sbjct: 61  GVGLAAPQVNYSLRMASILVPSLDPHESDETPYFKGTIFNPTIISESIKRGALDVGEGCL 120

Query: 96  SI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           S+  D    V R+  ITVRY D     +II      A   QHE+DHL+G L+ DH+
Sbjct: 121 SVDKDVPGFVPRADRITVRYQDETGATKIIKLRDYPAIVFQHEIDHLHGHLYYDHI 176


>gi|22537481|ref|NP_688332.1| peptide deformylase [Streptococcus agalactiae 2603V/R]
 gi|22534360|gb|AAN00205.1|AE014253_3 polypeptide deformylase, putative [Streptococcus agalactiae
           2603V/R]
          Length = 136

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 29  MNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           ++L  ++ E +++     +G+AA  IG L R+++I++         +V  NP ++  SD 
Sbjct: 24  VSLAKDLQETLHANQNYCVGMAANMIGSLKRVIIINV-----GITNLVMFNPVVVAKSDP 78

Query: 87  FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +   +E CLS+   R+  +R   IT+ Y D N + Q I      A   QHELDHL GIL
Sbjct: 79  YET-EESCLSLVGCRS-TQRYCHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGIL 135


>gi|319745793|gb|EFV98087.1| peptide deformylase [Streptococcus agalactiae ATCC 13813]
          Length = 204

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%)

Query: 11  DPILRRVSRPI--------EKINSDIMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57
           +P LR+V+  +        E +   +M  + +     M E +    G+GLAA Q+ +  R
Sbjct: 24  NPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKR 83

Query: 58  LVVI---DLQDHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSI----PDY 100
           ++ +   +++D   + NP         V  NPK+++ S  D      EGCLS+    P Y
Sbjct: 84  IIAVLVPNVEDA--QGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY 141

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +T+ Y D   +   +   G  +  +QHE+DH++GI+F D ++ 
Sbjct: 142 ---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190


>gi|309807903|ref|ZP_07701833.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a]
 gi|308168852|gb|EFO70940.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a]
          Length = 184

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV---LY 56
           +LR+V + +   +N     L ++M++ + ++             G+GLAA Q+G    + 
Sbjct: 14  VLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQVA 73

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDYRADVKRSAFITVR 113
            L+V D Q +   K    F+NPKII+ S   +   EG  CLS+  D +  V R+  + ++
Sbjct: 74  ALLVPDDQGNIIFKE--TFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIK 131

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 132 YQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|325663348|ref|ZP_08151798.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470802|gb|EGC74032.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 136

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++++++         +V  NP ++     +   +EGCLS+   R   
Sbjct: 42  VGMAANMIGVKKRVIIVNMGFV-----DVVMFNPVLVRKESPYET-EEGCLSLTGVRK-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y+D N + Q +  DG  A   QHELDHL GIL
Sbjct: 95  TRYQTIEVEYLDMNWKKQNLKLDGWTAQICQHELDHLEGIL 135


>gi|160943037|ref|ZP_02090275.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445731|gb|EDP22734.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii
           M21/2]
          Length = 136

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 11/140 (7%)

Query: 8   IFPDPI-LRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           I  DP+ L + S P    ++ +  +L+D +    ++   +G+AA  IGV  R++ ++ +D
Sbjct: 5   IMHDPLFLAQKSAPATPEDAPVARDLLDTL--TAHADGCVGMAANMIGVRKRIIAVEAED 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V  NP I+  S  +   +EGCLS+   R   KR   I V+Y   + + +I  
Sbjct: 63  -----GYLVLFNPVILKKSGQYEA-EEGCLSLEGVR-KTKRWQSIKVQYQTMDGKLRIKT 115

Query: 126 ADGLLATCLQHELDHLNGIL 145
             G  A  +QHE+DH +GIL
Sbjct: 116 FTGWTAQIIQHEIDHCDGIL 135


>gi|291320109|ref|YP_003515367.1| formylmethionine deformylase [Mycoplasma agalactiae]
 gi|290752438|emb|CBH40409.1| Formylmethionine deformylase [Mycoplasma agalactiae]
          Length = 187

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 20/165 (12%)

Query: 6   LVIFPDPILRR---------VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           LV  P  +LR+          S  IE   + I ++ D+  +      G+G+AAVQ G+L 
Sbjct: 8   LVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAAVQYGILK 67

Query: 57  RLVVIDL-QDHAHRKNPM---VFINPKIITFSDD-FSVYQ-EGCLS----IPDYRADVKR 106
           R+  I++ +D    K+ +   VF NP II  S+   ++ Q EGCLS    IP+    V R
Sbjct: 68  RVFYINITEDMVDDKSQILRDVFFNPTIIAMSNSKIALSQGEGCLSVRRNIPNQSGLVYR 127

Query: 107 SAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              I +  Y     + +     G  A   QHELDHL G LFID +
Sbjct: 128 HKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRI 172


>gi|328770364|gb|EGF80406.1| hypothetical protein BATDEDRAFT_88570 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 198

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%)

Query: 45  IGLAAVQIG-----VLYRLVVIDLQDHAHRKNPMV---FINPKIITF----SDDFSVYQE 92
           +GLAA QI      + Y++    L    +   P+     +NP +       S  +    E
Sbjct: 62  LGLAAAQISHPVQLIAYQITDTQLIKEKNLPGPVARTFIVNPVMTILDKLPSAKWKAEYE 121

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            C SIP+Y   V+R+  + V     +     + A G+LA  +QHE+DH+ GILFID + R
Sbjct: 122 FCESIPNYSGLVRRADHVHVTGFGLDGNSITVNAKGILARIIQHEMDHMEGILFIDKMER 181


>gi|227511983|ref|ZP_03942032.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
 gi|227084791|gb|EEI20103.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
          Length = 136

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 11/119 (9%)

Query: 31  LIDNMLEVMYSTDGI--GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88
           +I ++L+ +++   I  G+AA  IGV  R++V+ +        P+  +NP+I+  S  F+
Sbjct: 26  IITDLLDTLHANTQICVGMAANMIGVNKRIIVVQM-----GMLPVALVNPEIVEKSVPFA 80

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYADGLLATCLQHELDHLNGILF 146
             +EGCLS+   R+   R   ITV Y+D N + H+  ++D  +A  +QHE+DH  GIL 
Sbjct: 81  T-KEGCLSLEGQRS-TTRYKEITVTYLDQNLRSHRQGFSD-WIAQIIQHEVDHCEGILI 136


>gi|268608180|ref|ZP_06141907.1| peptide deformylase [Ruminococcus flavefaciens FD-1]
          Length = 137

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 12/139 (8%)

Query: 8   IFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQ 64
           I  DP +L R S P  K +   M+ + ++L+ + +     +G+AA  IGV   ++V  + 
Sbjct: 5   IVRDPLVLGRKSEPAGKED---MHTVRDLLDTLAANSDRCVGMAANMIGVHKTILVAAVG 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A     +  INPKI   S D    +EGCLS+   R  V+R  FITV Y+D   + +  
Sbjct: 62  GKA-----VAMINPKITDKSKDTYDTEEGCLSLDGVRP-VQRYKFITVEYLDHRFKKKKQ 115

Query: 125 YADGLLATCLQHELDHLNG 143
                 A  +QHE+DH +G
Sbjct: 116 TFRDFEAQIIQHEIDHFSG 134


>gi|315226122|ref|ZP_07867910.1| peptide deformylase [Parascardovia denticolens DSM 10105]
 gi|315120254|gb|EFT83386.1| peptide deformylase [Parascardovia denticolens DSM 10105]
          Length = 244

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 31/173 (17%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDN-MLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR  + P + ++ +  ++L+   M + M +  G+GLA  QIG+   + V+ 
Sbjct: 40  PIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVV- 98

Query: 63  LQDH-----AHRKNPM----------------------VFINPKIITFSDDFSVYQEGCL 95
            +DH     +   +P                       + INP      D+ + + EGCL
Sbjct: 99  -EDHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCL 157

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           S   Y+A  KR   I   + D              A   QHE DHL+G ++ID
Sbjct: 158 SFDGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYID 210


>gi|294786544|ref|ZP_06751798.1| peptide deformylase [Parascardovia denticolens F0305]
 gi|294485377|gb|EFG33011.1| peptide deformylase [Parascardovia denticolens F0305]
          Length = 234

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 31/173 (17%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDN-MLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR  + P + ++ +  ++L+   M + M +  G+GLA  QIG+   + V+ 
Sbjct: 30  PIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVV- 88

Query: 63  LQDH-----AHRKNPM----------------------VFINPKIITFSDDFSVYQEGCL 95
            +DH     +   +P                       + INP      D+ + + EGCL
Sbjct: 89  -EDHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCL 147

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           S   Y+A  KR   I   + D              A   QHE DHL+G ++ID
Sbjct: 148 SFDGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYID 200


>gi|107025411|ref|YP_622922.1| aminotransferase, class IV [Burkholderia cenocepacia AU 1054]
 gi|105894785|gb|ABF77949.1| branched chain amino acid: 2-keto-4-methylthiobutyrate
           aminotransferase [Burkholderia cenocepacia AU 1054]
          Length = 496

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 12/145 (8%)

Query: 14  LRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQDHA 67
           LR V+RP++ + +    +  + +   L       G G  +AA QIG+  R++ + L    
Sbjct: 13  LRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGIGQRMIALALDGW- 71

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYA 126
               P V +NP+I+  SD      + C+  PD    V+R A ++VRY   + + HQ    
Sbjct: 72  ----PDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRYTTLDGEPHQRDAL 127

Query: 127 DGLLATCLQHELDHLNGILFIDHLS 151
              ++  +QHE+DHL+G L  D  +
Sbjct: 128 SPDVSELMQHEIDHLDGKLSFDRAT 152


>gi|228476502|ref|ZP_04061192.1| peptide deformylase [Streptococcus salivarius SK126]
 gi|228251923|gb|EEK10969.1| peptide deformylase [Streptococcus salivarius SK126]
          Length = 204

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 18/131 (13%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--D 85
           E M    G+GLAA Q+ +  R++ + + +      NP         +  NPK++  S  D
Sbjct: 63  EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQD 122

Query: 86  DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
                 EGCLS+    P Y   V R A +TV Y +   + Q +   G  +  +QHE+DH 
Sbjct: 123 AALGDGEGCLSVDRDVPGY---VVRHARVTVEYFNKEGEKQRVKLRGYNSIVVQHEIDHT 179

Query: 142 NGILFIDHLSR 152
           NGI+F D +++
Sbjct: 180 NGIMFYDRINK 190


>gi|184155075|ref|YP_001843415.1| peptide deformylase [Lactobacillus fermentum IFO 3956]
 gi|260663619|ref|ZP_05864508.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
 gi|238692958|sp|B2GBA3|DEF_LACF3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|183226419|dbj|BAG26935.1| formylmethionine deformylase [Lactobacillus fermentum IFO 3956]
 gi|260551845|gb|EEX24960.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
          Length = 189

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 7/116 (6%)

Query: 44  GIGLAAVQIGVLYRLVVIDL-QDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI 97
           G+GLAA Q+ V  ++  + +  D      P+   V INP II+ S       EG  CLS+
Sbjct: 60  GVGLAAPQVNVSKQMAAVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSV 119

Query: 98  P-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             D    V R   IT++Y D   +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 120 DRDIAGYVPRHDRITLKYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175


>gi|157964118|ref|YP_001498942.1| polypeptide deformylase [Rickettsia massiliae MTU5]
 gi|157843894|gb|ABV84395.1| Polypeptide deformylase [Rickettsia massiliae MTU5]
          Length = 232

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95
           GLAA QIG+   +++  + + A  K             ++INP       D     EGC 
Sbjct: 92  GLAAPQIGISKCIIIFAVHEDAELKKWRPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCF 151

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           S+ +    V R   I     D N       A+G LA  +QHE+DHLNG +F+D+++  K
Sbjct: 152 SVENAIGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPQK 210


>gi|170737315|ref|YP_001778575.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3]
 gi|169819503|gb|ACA94085.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3]
          Length = 496

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 12/145 (8%)

Query: 14  LRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQDHA 67
           LR V+RP++ + +    +  + +   L       G G  +AA QIG+  R++ + L    
Sbjct: 13  LRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGIGQRMIALALDGW- 71

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ-HQIIYA 126
               P V +NP+I+  SD      + C+  PD    V+R A ++VRY   + + HQ    
Sbjct: 72  ----PDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRYTTLDGEPHQRDAL 127

Query: 127 DGLLATCLQHELDHLNGILFIDHLS 151
              ++  +QHE+DHL+G L  D  +
Sbjct: 128 SPDVSELMQHEIDHLDGKLSFDRAA 152


>gi|325688025|gb|EGD30044.1| peptide deformylase [Streptococcus sanguinis SK72]
 gi|327469220|gb|EGF14692.1| peptide deformylase [Streptococcus sanguinis SK330]
          Length = 136

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 9/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           + +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V
Sbjct: 12  LQQPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVV 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP + + S  +   +E CLS+   R   +R   IT+ Y+D + Q Q +   GL A   
Sbjct: 67  MFNPVLRSKSGPYQT-EESCLSLVGSRP-TQRYQEITIDYLDKHWQQQTMTLKGLPAQIC 124

Query: 135 QHELDHLNGIL 145
           QHELDHL GI+
Sbjct: 125 QHELDHLEGII 135


>gi|229823199|ref|ZP_04449268.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271]
 gi|229787365|gb|EEP23479.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271]
          Length = 185

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 9/118 (7%)

Query: 44  GIGLAAVQIGV---LYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQ--EGCL 95
           G+GLAA QI +   ++ + ++   +  +   P+   +  NPKII+ S      +  EGCL
Sbjct: 55  GVGLAAPQINLPKQIFAVHIMSYDEEGNEAEPLLSEILFNPKIISHSVQEVALRDGEGCL 114

Query: 96  SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           S+  +    V R   I +RY D   +   +      A  +QHELDHL GI+F DH+++
Sbjct: 115 SVNREVPGLVPRPRRIRLRYQDMEGKEHELRLRDYEAIVVQHELDHLKGIMFYDHINQ 172


>gi|171742883|ref|ZP_02918690.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC
           27678]
 gi|171278497|gb|EDT46158.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC
           27678]
          Length = 134

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 6/140 (4%)

Query: 28  IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87
           + +L+ ++L+ +      GL+A QIGV  R    ++         + ++   ++  +   
Sbjct: 1   MRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNID------GKIGYVLNPVLEETSGE 54

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
               EGCLS+P      +R+ +  VR +D +    ++   G++   LQHE DHL+G +++
Sbjct: 55  QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHGIMGRMLQHETDHLDGHVYL 114

Query: 148 DHLSRLKRDMITKKMSKLVQ 167
           D L + +R    + M    Q
Sbjct: 115 DRLEKEERREAMRYMRNHRQ 134


>gi|332363811|gb|EGJ41590.1| peptide deformylase [Streptococcus sanguinis SK355]
 gi|332365740|gb|EGJ43498.1| peptide deformylase [Streptococcus sanguinis SK1059]
          Length = 136

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 9/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           + +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V
Sbjct: 12  LQQPSEQASREDLYLAQDLQDTLQANQENCIGLAANMIGVRKRVIIF-----LYGLVPVV 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP + + S  +   +E CLS+   R   +R   IT+ Y+D + Q Q +   GL A   
Sbjct: 67  MFNPVLRSKSGPYQT-EESCLSLVGSRP-TQRYQEITIDYLDKHWQQQTMTLKGLPAQIC 124

Query: 135 QHELDHLNGIL 145
           QHELDHL GI+
Sbjct: 125 QHELDHLEGII 135


>gi|270291431|ref|ZP_06197653.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
 gi|304385144|ref|ZP_07367490.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
 gi|270280277|gb|EFA26113.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
 gi|304329338|gb|EFL96558.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
          Length = 184

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 29/165 (17%)

Query: 11  DPILR-RVSRPIEKINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           +P+LR R  +    ++   + + D M+E + ++             G+GLAA QIG+  +
Sbjct: 12  NPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPKIAQKYHLRAGVGLAAPQIGLSIQ 71

Query: 58  LVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSI----PDYRADVKRS 107
           +  + +       + ++F    +NP I++ S   +   EG  CLS+    P Y   V R 
Sbjct: 72  MASVLV---PGPDDEIIFEETLVNPVIVSQSVQVAALDEGEGCLSVDKEVPGY---VPRY 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             IT+RY +   + + I      A   QHE+DHL G LF DH+++
Sbjct: 126 DRITIRYQNVEGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINK 170


>gi|227893361|ref|ZP_04011166.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
 gi|227864776|gb|EEJ72197.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
          Length = 184

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 26/172 (15%)

Query: 11  DPILRRVSRPI--------EKINSDIMNLIDN-----MLEVMYSTDGIGLAAVQIGVLYR 57
           DP+LR+V++P+        +K+  D+M  + N     + E      G+GLAA Q+G   +
Sbjct: 12  DPVLRQVAKPLTFPLSDHYKKLAKDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVGESVQ 71

Query: 58  LVVIDLQDHAHR---KNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111
           +  + + D   +   K    ++NP+II+ S   +   EG  CLS+       V R   +T
Sbjct: 72  MAALLVPDDEGKIIFKE--TYVNPEIISESVRQACLSEGEGCLSVDKVINGYVPRPDKLT 129

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           + Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKDPYSLKEDTV 181


>gi|319939890|ref|ZP_08014245.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
 gi|319810901|gb|EFW07220.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
          Length = 204

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 18/131 (13%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFS--D 85
           E M    G+GLAA Q+ +  R++ + + +   ++ NP         V  N KI+  S  D
Sbjct: 63  EKMGLRGGVGLAAPQLDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKIVAHSVQD 122

Query: 86  DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
                 EGCLS+    P Y   V R A +TV Y D   +   I   G  +  +QHE+DH 
Sbjct: 123 AALAEGEGCLSVDREVPGY---VVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEIDHT 179

Query: 142 NGILFIDHLSR 152
           NGI+F D ++ 
Sbjct: 180 NGIMFYDRINE 190


>gi|148377446|ref|YP_001256322.1| formylmethionine deformylase [Mycoplasma agalactiae PG2]
 gi|148291492|emb|CAL58878.1| Formylmethionine deformylase [Mycoplasma agalactiae PG2]
          Length = 187

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 20/165 (12%)

Query: 6   LVIFPDPILRR---------VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           LV  P  +LR+          S  IE   + I ++ D+  +      G+G+AAVQ G+L 
Sbjct: 8   LVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAAVQYGILK 67

Query: 57  RLVVIDL-QDHAHRKNPM---VFINPKIITFSDD-FSVYQ-EGCLS----IPDYRADVKR 106
           R+  I++ +D    K  +   VF NP II  S+   ++ Q EGCLS    IP+    V R
Sbjct: 68  RVFYINITEDMVDDKKQVLRDVFFNPTIIAMSNSKIALSQGEGCLSVGRNIPNQSGLVYR 127

Query: 107 SAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              I +  Y     + +     G  A   QHELDHL G LFID +
Sbjct: 128 HKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRI 172


>gi|227509076|ref|ZP_03939125.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191463|gb|EEI71530.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 136

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 14/136 (10%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + ++P    +S I   I ++L+ + +   I  G+AA  IGV  R++V+ +        
Sbjct: 12  LSQRAQPATSADSQI---ITDLLDTLRANTQICVGMAANMIGVNKRIIVVQM-----GML 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQHQIIYADGLL 130
           P+  +NP+I+  S  F+  +EGCLS+   R+   R   ITV Y+D N   H+  ++D  +
Sbjct: 64  PVALVNPEIVEKSVPFAT-KEGCLSLEGQRS-TTRYKEITVTYLDQNFRSHRQGFSD-WI 120

Query: 131 ATCLQHELDHLNGILF 146
           A  +QHE+DH  GIL 
Sbjct: 121 AQIIQHEVDHCEGILI 136


>gi|312863990|ref|ZP_07724226.1| peptide deformylase [Streptococcus vestibularis F0396]
 gi|322517594|ref|ZP_08070462.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
 gi|311100403|gb|EFQ58610.1| peptide deformylase [Streptococcus vestibularis F0396]
 gi|322123759|gb|EFX95337.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
          Length = 204

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 18/131 (13%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--D 85
           E M    G+GLAA Q+ +  R++ + + +      NP         +  NPK++  S  D
Sbjct: 63  EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQD 122

Query: 86  DFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
                 EGCLS+    P Y   V R A +TV Y +   + Q +   G  +  +QHE+DH 
Sbjct: 123 AALGDGEGCLSVDRDVPGY---VVRHARVTVEYYNKEGEKQRVKLRGYNSIVVQHEIDHT 179

Query: 142 NGILFIDHLSR 152
           NGI+F D +++
Sbjct: 180 NGIMFYDRINK 190


>gi|55820249|ref|YP_138691.1| peptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55822139|ref|YP_140580.1| peptide deformylase [Streptococcus thermophilus CNRZ1066]
 gi|116627103|ref|YP_819722.1| peptide deformylase [Streptococcus thermophilus LMD-9]
 gi|81676625|sp|Q5M1R9|DEF_STRT1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81676774|sp|Q5M6B0|DEF_STRT2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122268294|sp|Q03MP6|DEF_STRTD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|55736234|gb|AAV59876.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55738124|gb|AAV61765.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066]
 gi|116100380|gb|ABJ65526.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus
           LMD-9]
 gi|312277572|gb|ADQ62229.1| Peptide deformylase [Streptococcus thermophilus ND03]
          Length = 204

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 18/131 (13%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK-NP--------MVFINPKIITFSDDF 87
           E M    G+GLAA Q+ +  R++ + + +    K NP         +  NPK++  S   
Sbjct: 63  EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDAKGNPPKEAYSLQEIMYNPKVVAHSVQE 122

Query: 88  SVYQ--EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
           +     EGCLS+    P Y   V R A +T+ Y +   + + I   G  +  +QHE+DH 
Sbjct: 123 AALGNGEGCLSVDRDVPGY---VVRHARVTIEYFNKEGEKKRIKLRGYDSIVVQHEIDHT 179

Query: 142 NGILFIDHLSR 152
           NGI+F D +++
Sbjct: 180 NGIMFYDRINK 190


>gi|170017441|ref|YP_001728360.1| peptide deformylase [Leuconostoc citreum KM20]
 gi|169804298|gb|ACA82916.1| peptide deformylase [Leuconostoc citreum KM20]
          Length = 195

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 31/169 (18%)

Query: 11  DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTD-----------GIGLAAVQIGVL 55
           DP+LR+VS     P+ + ++ +    D M  ++ S D           G+GLAA Q+G  
Sbjct: 15  DPVLRQVSTAVPFPLSEEHAQLAQ--DMMTYLVVSQDEEENEKYGLRPGVGLAAPQVGYS 72

Query: 56  YRLVVI----------DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI-PDYRA 102
            ++  I          D QD        +F NP II+ S   S     EGCLS+  D   
Sbjct: 73  LQMTSILIPALETHEQDEQDDKPYFKGTIF-NPVIISESVKRSALNVGEGCLSVDEDVPG 131

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V R+  ITVRY D     + +      A   QHE+DHL+G L+ DH++
Sbjct: 132 FVPRANRITVRYQDETGATKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 180


>gi|288904432|ref|YP_003429653.1| polypeptide deformylase [Streptococcus gallolyticus UCN34]
 gi|306830465|ref|ZP_07463635.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325977428|ref|YP_004287144.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731157|emb|CBI12705.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34]
 gi|304427490|gb|EFM30592.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177356|emb|CBZ47400.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 204

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 12/126 (9%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--D 85
           E M    G+GLAA Q+ +  R++ + + +   +  NP         V  NPK++  S  D
Sbjct: 63  EKMGLRGGVGLAAPQLDISKRIIAVLVPNPEDKDGNPPKEAYSLQEVMYNPKVVAHSVQD 122

Query: 86  DFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
                 EGCLS+       V R + +TV Y D N +   I   G  +  +QHE+DH NGI
Sbjct: 123 AALADGEGCLSVDRVVEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGI 182

Query: 145 LFIDHL 150
           +F D +
Sbjct: 183 MFYDRI 188


>gi|326692674|ref|ZP_08229679.1| peptide deformylase [Leuconostoc argentinum KCTC 3773]
          Length = 192

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 22/163 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMY-STD-----------GIGLAAVQIGVLYR 57
           +P+LR+V+  +   ++ +   L ++M+  +  S D           G+GLAA Q+G   +
Sbjct: 15  EPVLRQVAEKVPFPLSEEHAQLAEDMMTYLVISQDEEQNEKYGLRPGVGLAAPQVGESLQ 74

Query: 58  L--VVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSA 108
           +  V+I  QD   R     F     NP II+ S   +     EGCLS+  D    V R+ 
Sbjct: 75  MAAVLIPSQDPHERDAEPYFKGTIFNPVIISESVKRAALDVGEGCLSVDEDVPGFVPRAN 134

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ITVRY +   + + +      A   QHE+DHL+G L+ DH++
Sbjct: 135 RITVRYQNEQGETKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 177


>gi|313890594|ref|ZP_07824222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121111|gb|EFR44222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 136

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)

Query: 8   IFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           I  DP  L+++S+   K +  I   + + L   +    +GLAA  IG   R+++I +   
Sbjct: 5   IVKDPFFLQQISKQATKEDLPIGKDLQDTLS-FHREHCLGLAANMIGESKRVIIISM--- 60

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                 ++  NPK++  ++ + V +E CLS+   +   +R   ITV Y+D N + + +  
Sbjct: 61  --GFVDILMFNPKLVKKTNPY-VTEESCLSLSGNQK-TQRYQKITVEYLDLNWRKKSLSL 116

Query: 127 DGLLATCLQHELDHLNGIL 145
           +GL A   QHELDHL+GIL
Sbjct: 117 NGLAAQICQHELDHLDGIL 135


>gi|19745939|ref|NP_607075.1| peptide deformylase [Streptococcus pyogenes MGAS8232]
 gi|19748096|gb|AAL97574.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232]
          Length = 136

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 7/108 (6%)

Query: 38  VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97
           V Y  + +G+AA  IG   R+V++ +         +V  NP +++    +   +E CLS+
Sbjct: 35  VFYRQECLGMAANMIGEQKRIVIVSMG-----FIDLVMFNPVMVSKKGIYQT-KESCLSL 88

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             YR   +R   ITV Y+D N + + +   GL A   QHELDHL GIL
Sbjct: 89  SGYRK-TQRYDKITVEYLDHNWRPKRLSLTGLTAQICQHELDHLEGIL 135


>gi|227514799|ref|ZP_03944848.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
 gi|227086847|gb|EEI22159.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
          Length = 189

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 7/116 (6%)

Query: 44  GIGLAAVQIGVLYRLVVIDL-QDHAHRKNPM---VFINPKIITFSDDFSVYQEG--CLSI 97
           G+GLAA Q+ +  ++  + +  D      P+   V INP II+ S       EG  CLS+
Sbjct: 60  GVGLAAPQVNISKQMAAVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSV 119

Query: 98  P-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             D    V R   IT++Y D   +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 120 DRDIAGYVPRHDRITLKYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175


>gi|329116594|ref|ZP_08245311.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
 gi|326906999|gb|EGE53913.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
          Length = 136

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           IGLAA  IG    +++I +         +V  NP+II  SD +   +E CLS+   +   
Sbjct: 42  IGLAANMIGEKKAVIIISMG-----FVDLVMFNPQIIKQSDVYQT-EESCLSLTGSKP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           KR   ITVRY+D N + + +   GL A   QHE+DHL G L
Sbjct: 95  KRFETITVRYLDMNWREKNLTLTGLPAQICQHEMDHLEGKL 135


>gi|25011446|ref|NP_735841.1| peptide deformylase [Streptococcus agalactiae NEM316]
 gi|77411175|ref|ZP_00787527.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|24412984|emb|CAD47063.1| unknown [Streptococcus agalactiae NEM316]
 gi|77162793|gb|EAO73752.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|319745273|gb|EFV97591.1| peptide deformylase [Streptococcus agalactiae ATCC 13813]
          Length = 136

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IG L R+++I++         +V  NP ++  SD +   +E CLS+   R+  
Sbjct: 42  VGMAANMIGSLKRVIIINVG-----ITNLVMFNPVLVAKSDPYET-EESCLSLVGCRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   IT+ Y D N + Q I      A   QHELDHL GIL
Sbjct: 95  QRYRHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGIL 135


>gi|225405389|ref|ZP_03760578.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme
           DSM 15981]
 gi|225043091|gb|EEG53337.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme
           DSM 15981]
          Length = 160

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 16/150 (10%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIM-----NLIDNMLEV--MYSTDGIGLAAVQIGVLY 56
           K +++  +P L  +S  + +     M     +L D M+E   +Y   G  +AA QIGV  
Sbjct: 3   KEILLLGNPALYEISEAVREEELTEMAALERDLHDTMMEFRRIYKA-GRAIAAPQIGVKK 61

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           R++ +++ +      P++ INP ++ F D +     + C+S P     V R     + Y 
Sbjct: 62  RVLYMNVGE------PVLLINP-VLEFPDGEMMEVMDDCMSFPGLLVKVDRYRRCRIHYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           D N Q + +  +G L+  LQHE DHL+GIL
Sbjct: 115 DRNWQDEEMELEGDLSELLQHEYDHLDGIL 144


>gi|320547748|ref|ZP_08042032.1| peptide deformylase [Streptococcus equinus ATCC 9812]
 gi|320447508|gb|EFW88267.1| peptide deformylase [Streptococcus equinus ATCC 9812]
          Length = 204

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 12/126 (9%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--D 85
           E M    G+GLAA Q+ V  R++ + + +   +  NP         V  NPK++  S  D
Sbjct: 63  EKMGLRGGVGLAAPQLNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQD 122

Query: 86  DFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
                 EGCLS+       V R + +TV Y + N +   +   G  +  +QHE+DH NGI
Sbjct: 123 AALADGEGCLSVDRVVEGYVVRHSRVTVEYFNKNGEKHRVKLKGYNSIVVQHEIDHTNGI 182

Query: 145 LFIDHL 150
           +F D +
Sbjct: 183 MFYDRI 188


>gi|76787753|ref|YP_329975.1| peptide deformylase [Streptococcus agalactiae A909]
 gi|76799363|ref|ZP_00781521.1| polypeptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77414517|ref|ZP_00790664.1| polypeptide deformylase [Streptococcus agalactiae 515]
 gi|76562810|gb|ABA45394.1| polypeptide deformylase [Streptococcus agalactiae A909]
 gi|76585283|gb|EAO61883.1| polypeptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77159440|gb|EAO70604.1| polypeptide deformylase [Streptococcus agalactiae 515]
          Length = 136

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IG L R+++I++         +V  NP ++  SD +   +E CLS+   R+  
Sbjct: 42  VGMAANMIGSLKRVIIINV-----GITNLVMFNPVLVAKSDPYET-EESCLSLVGCRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   IT+ Y D N + Q I      A   QHELDHL GIL
Sbjct: 95  QRYHHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGIL 135


>gi|116490852|ref|YP_810396.1| peptide deformylase [Oenococcus oeni PSU-1]
 gi|290890300|ref|ZP_06553379.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429]
 gi|116091577|gb|ABJ56731.1| peptide deformylase [Oenococcus oeni PSU-1]
 gi|290480086|gb|EFD88731.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429]
          Length = 185

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 21/164 (12%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54
           +P+LR  ++P+   ++ +I  L   MLE +  +             G+GLA  Q+     
Sbjct: 9   NPVLRAKAKPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQVNKSLQ 68

Query: 55  LYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSAF 109
           +  L++  L      K     +  NPKI   S   +  +  EGCLS   D    V R+  
Sbjct: 69  MTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALETGEGCLSKDEDTPGIVLRADK 128

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           ITV Y D N +H  I      A   QHE+DHL GI++ DH++ L
Sbjct: 129 ITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 172


>gi|331083476|ref|ZP_08332588.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404169|gb|EGG83717.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 136

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV   ++++++         +V  NP ++     +   +EGCLS+   R   
Sbjct: 42  VGMAANMIGVKKSVIIVNMGFV-----DVVMFNPVLVRKESPYET-EEGCLSLTGVRKTT 95

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y+D N + Q +  DG  A   QHELDHL GIL
Sbjct: 96  -RYQMIEVEYLDMNWKKQKLKLDGWTAQICQHELDHLEGIL 135


>gi|86742919|ref|YP_483319.1| formylmethionine deformylase [Frankia sp. CcI3]
 gi|86569781|gb|ABD13590.1| formylmethionine deformylase [Frankia sp. CcI3]
          Length = 549

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 15/150 (10%)

Query: 11  DPILRRVSRPI---------EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + ILR+ +RP           ++ +++ + ++ +  +     G+G+AA Q+G+     ++
Sbjct: 382 EAILRQPARPFALPNEAEDARRVVAELSSALERVSALHTFGKGLGIAAPQVGINRAAAIV 441

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA-Q 120
                    + +  +NP +I  S +     EGCLS  D R  V R   + V + D +  +
Sbjct: 442 ----RTAGGDTLTLLNPSVIETSRETDEQYEGCLSFFDVRGLVPRPLELHVEHTDIDGNR 497

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
           H  +Y  GL A  + HE+DHL+G L+ D +
Sbjct: 498 HITVYRQGL-ARLVAHEIDHLHGQLYTDRM 526


>gi|262283351|ref|ZP_06061117.1| peptide deformylase [Streptococcus sp. 2_1_36FAA]
 gi|262260842|gb|EEY79542.1| peptide deformylase [Streptococcus sp. 2_1_36FAA]
          Length = 136

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R+++       +   P++  NP +   S  +   +EGCLS+   R+  
Sbjct: 42  VGLAANMIGVKKRVIIF-----MYGMVPIIMFNPVLRAKSGPYQT-EEGCLSLVGSRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   ITV Y+D N Q Q I      A   QHELDHL GIL
Sbjct: 95  TRYQEITVDYLDRNWQPQTITLKDFPAQICQHELDHLEGIL 135


>gi|322411580|gb|EFY02488.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 136

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IG   R+++I +         +V  NP I++  + +   +E CLS+   R   
Sbjct: 42  LGLAANMIGEQKRVIIISMG-----FVDLVMFNPVIVSKREAYET-EESCLSLTGSR-QT 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           KR   ITV Y+D N + + +   GL A   QHELDHL GIL
Sbjct: 95  KRYTSITVEYVDLNWRPKRLRLSGLPAQICQHELDHLEGIL 135


>gi|295099860|emb|CBK88949.1| N-formylmethionyl-tRNA deformylase [Eubacterium cylindroides T2-87]
          Length = 136

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 8/133 (6%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           IL R+S    K +  I   + + LE  +     G+AA  IG   R  +I  QD       
Sbjct: 11  ILSRISVLANKDDLSIAQDLIDTLEA-HKVSCAGMAANMIGFHKR--IIAFQDEG---KI 64

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +V +NP+II  S  +S  +EGCLS+   R + KR   I VRY+D   + +I       A 
Sbjct: 65  VVMLNPEIIKKSQIYSA-KEGCLSLSGQR-ETKRYRSIKVRYLDMQMKIKIKTFKDFTAQ 122

Query: 133 CLQHELDHLNGIL 145
            +QHE+DH +GIL
Sbjct: 123 VIQHEIDHCDGIL 135


>gi|158320246|ref|YP_001512753.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs]
 gi|158140445|gb|ABW18757.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs]
          Length = 164

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           G  +AA QIG+  RL+      +     P +FINP +    D+     + C+S P     
Sbjct: 49  GRAVAAPQIGIKKRLL------YMFTDQPYIFINPVMSFPEDEKYTLLDDCMSFPGLIVK 102

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           V+R     + Y D +   Q +Y  G L+  LQHE DHL GIL
Sbjct: 103 VERYKRAEISYFDKDFNPQKMYLKGDLSELLQHEYDHLEGIL 144


>gi|116630410|ref|YP_819563.1| peptide deformylase [Lactobacillus gasseri ATCC 33323]
 gi|238852749|ref|ZP_04643155.1| peptide deformylase [Lactobacillus gasseri 202-4]
 gi|282850746|ref|ZP_06260121.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311111595|ref|ZP_07712992.1| peptide deformylase [Lactobacillus gasseri MV-22]
 gi|116095992|gb|ABJ61144.1| N-formylmethionyl-tRNA deformylase [Lactobacillus gasseri ATCC
           33323]
 gi|238834599|gb|EEQ26830.1| peptide deformylase [Lactobacillus gasseri 202-4]
 gi|282558154|gb|EFB63741.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311066749|gb|EFQ47089.1| peptide deformylase [Lactobacillus gasseri MV-22]
          Length = 137

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 9/101 (8%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           GLAA  IGV  R++ + +        P+V +NP I+  +D +  Y EGCLS+   R   +
Sbjct: 44  GLAANMIGVQKRIIALFVGPL-----PIVMLNPIIVKKADKYLAY-EGCLSLEGERP-TE 96

Query: 106 RSAFITVRYMDCNAQ-HQIIYADGLLATCLQHELDHLNGIL 145
           R   ITV+Y + N +  Q  ++D  +A  +QHE+DH NGIL
Sbjct: 97  RYKKITVKYQNENFETRQQAFSD-FVAEVIQHEVDHCNGIL 136


>gi|294669089|ref|ZP_06734175.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
          29315]
 gi|291309081|gb|EFE50324.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
          29315]
          Length = 76

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 9  FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
          +PD  L  V++P+EKI+  I  LI +M + MY   GIGLAA Q+ V  R+VV+DL + 
Sbjct: 9  YPDDRLHTVAKPVEKIDERIKTLITDMFDTMYEARGIGLAATQVDVHERVVVMDLSEE 66


>gi|302519737|ref|ZP_07272079.1| formylmethionine deformylase [Streptomyces sp. SPB78]
 gi|302428632|gb|EFL00448.1| formylmethionine deformylase [Streptomyces sp. SPB78]
          Length = 403

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 27  DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           +I  ++D +L       G+GL+A QIGV     ++     A     +  +NP++I  S +
Sbjct: 264 EIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPWGAPA---VTLLNPRVIAGSRE 320

Query: 87  FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
            +   E C   P  R    R   ITVR                LA  + HE+DHL G+L 
Sbjct: 321 TAEEYESCPGRPGPRTPTSRPNEITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLL- 379

Query: 147 IDHLSRLK 154
             H  RL 
Sbjct: 380 --HPPRLP 385


>gi|291457332|ref|ZP_06596722.1| peptide deformylase [Bifidobacterium breve DSM 20213]
 gi|291381167|gb|EFE88685.1| peptide deformylase [Bifidobacterium breve DSM 20213]
          Length = 139

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR  S P E  +   M  + + LE   S   +G+AA  IGV  R++    +D   R    
Sbjct: 12  LRTPSEPAEPSDEAAMQDLVDTLEANRSR-CVGMAANMIGVGKRIIAFVDEDLGGRVT-- 68

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V +NP +IT SD     QEGCLS+   R  + R   I V Y D   + +     G  A  
Sbjct: 69  VMLNP-VITASDGAFDTQEGCLSLAGERRTL-RYRRIEVDYEDRRFRARHATFTGWTAQI 126

Query: 134 LQHELDHLNGIL 145
           +QHE+DH NGI+
Sbjct: 127 IQHEVDHCNGII 138


>gi|327461858|gb|EGF08189.1| peptide deformylase [Streptococcus sanguinis SK1]
          Length = 136

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 12/139 (8%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           + F   +  R SR    +  D+ + +    E     + IGLAA  IGV  R+++      
Sbjct: 9   IFFLQQLSERASREDLYLAQDLQDTLQANRE-----NCIGLAANMIGVRKRVIIF----- 58

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            +   P+V  NP + + S  +   +E CLS+   R   +R   IT+ Y+D + Q Q +  
Sbjct: 59  LYGLVPVVMFNPVLRSKSGPYQT-EESCLSLVGSRP-TQRYQEITIDYLDKHWQQQTMTL 116

Query: 127 DGLLATCLQHELDHLNGIL 145
            GL A   QHELDHL GI+
Sbjct: 117 KGLPAQICQHELDHLEGII 135


>gi|33357294|pdb|1LM6|A Chain A, Crystal Structure Of Peptide Deformylase From
           Streptococcus Pneumoniae
          Length = 215

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 19/133 (14%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFS- 84
           M E M    G+GLAA Q+ +  R++ +         +    A+    +++ NPKI++ S 
Sbjct: 73  MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMY-NPKIVSHSV 131

Query: 85  DDFSVYQ-EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D ++ + EG LS+    P Y   V R A +TV Y D + +   I   G  +  +QHE+D
Sbjct: 132 QDAALGEGEGXLSVDRNVPGY---VVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEID 188

Query: 140 HLNGILFIDHLSR 152
           H+NGI+F D ++ 
Sbjct: 189 HINGIMFYDRINE 201


>gi|118586207|ref|ZP_01543674.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163]
 gi|118433357|gb|EAV40056.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163]
          Length = 197

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 21/164 (12%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54
           +P+LR  ++P+   ++ +I  L   MLE +  +             G+GLA  Q+     
Sbjct: 21  NPVLRAKAQPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQVNKSLQ 80

Query: 55  LYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQ--EGCLSI-PDYRADVKRSAF 109
           +  L++  L      K     +  NPKI   S   +  +  EGCLS   D    V R+  
Sbjct: 81  MTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALEAGEGCLSKDEDTPGIVLRADK 140

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           ITV Y D N +H  I      A   QHE+DHL GI++ DH++ L
Sbjct: 141 ITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 184


>gi|290579649|ref|YP_003484041.1| putative polypeptide deformylase [Streptococcus mutans NN2025]
 gi|254996548|dbj|BAH87149.1| putative polypeptide deformylase [Streptococcus mutans NN2025]
          Length = 204

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 12/128 (9%)

Query: 37  EVMYSTDGIGLAAVQIGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--D 85
           E M    G+GLAA Q+ +  R++ + + +      NP         +  NP+II  S  D
Sbjct: 63  EKMELRGGVGLAAPQLDISKRIIAVLIPNPEDEDGNPPKEAYALKEIMYNPRIIAHSVQD 122

Query: 86  DFSVYQEGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
                 EGCLS+       V R + +T+ Y D N+  + +   G  +  +QHE+DH NGI
Sbjct: 123 AALADGEGCLSVDRVVEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGI 182

Query: 145 LFIDHLSR 152
           +F D ++ 
Sbjct: 183 MFFDRINE 190


>gi|322390160|ref|ZP_08063692.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
 gi|321143120|gb|EFX38566.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
          Length = 136

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R ++I + +       +V  NP ++     +   +EGCLS+   R   
Sbjct: 42  VGLAANMIGVKKRAIIIRMGNEN-----LVMFNPVLLEKKKPYQT-EEGCLSLVGSRPTT 95

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   +TV Y D N + + I+  G  A   QHE+DHL G++
Sbjct: 96  -RYEEMTVAYRDVNWKAKTIHLSGFPAQICQHEMDHLEGVI 135


>gi|262045875|ref|ZP_06018839.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
 gi|260573834|gb|EEX30390.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
          Length = 184

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 26/172 (15%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54
           D +LR+V++P+    SD    L D+M++ +  +             G+GLAA Q+G    
Sbjct: 12  DSVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFIT 111
           +  L+V D Q     K   V++NP+I++ S   +   EG  CLS+ +     V R   +T
Sbjct: 72  MAALLVPDDQGKIIFKE--VYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPRPDKLT 129

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           + Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 130 IHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQDPFALKEDTV 181


>gi|268320251|ref|YP_003293907.1| polypeptide deformylase [Lactobacillus johnsonii FI9785]
 gi|262398626|emb|CAX67640.1| polypeptide deformylase [Lactobacillus johnsonii FI9785]
          Length = 137

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 7/100 (7%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           GLAA  IGV  R++ + +        P+V +NP I+  +D +  Y EGCLS+   R   +
Sbjct: 44  GLAANMIGVQKRIIALFVGPL-----PIVMLNPIIVAQNDKYLAY-EGCLSLTGERP-TE 96

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           R   ITV+Y + N + +        A  +QHE+DH NGIL
Sbjct: 97  RYKNITVKYQNENLETRQQSFSDFTAEVIQHEIDHCNGIL 136


>gi|239625206|ref|ZP_04668237.1| Def1 [Clostridiales bacterium 1_7_47_FAA]
 gi|239519436|gb|EEQ59302.1| Def1 [Clostridiales bacterium 1_7_47FAA]
          Length = 160

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           G  +AA QIGV  R++      + H   P++FINP++     +     + C+S PD    
Sbjct: 49  GRAIAAPQIGVKKRVI------YRHLDTPVLFINPRLEFPDKEEMEVMDDCMSFPDLLVR 102

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           V+R     + Y D   +   +  +G +A  +QHE DHL+GIL
Sbjct: 103 VRRYKRCIIHYRDEQWKECSLAFEGDMAELIQHEYDHLDGIL 144


>gi|251782236|ref|YP_002996538.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390865|dbj|BAH81324.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|323127088|gb|ADX24385.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 136

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IG   R+++I +         +V  NP +++  + +   +E CLS+   R   
Sbjct: 42  LGLAANMIGEQKRVIIISMG-----FVDLVMFNPVMVSKKEAYET-EESCLSLTGSR-QT 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           KR   ITV Y+D N + + +   GL A   QHELDHL GIL
Sbjct: 95  KRYTSITVEYVDLNWRPKRLRLSGLPAQICQHELDHLEGIL 135


>gi|310644037|ref|YP_003948795.1| peptide deformylase 2 [Paenibacillus polymyxa SC2]
 gi|309248987|gb|ADO58554.1| Peptide deformylase 2 [Paenibacillus polymyxa SC2]
          Length = 188

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 17/167 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTD------------GIGL 47
           ++ K +V   +PILR+   P+   ++ + +  +  ML+ + ++             G+GL
Sbjct: 4   LLTKDIVREGEPILRKKVDPVCLPLSEEDLQQMQWMLDYLKNSQNEELATRYELRPGVGL 63

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDY-RADV 104
           +A Q+G+  R+  I  +D        +F NPK+++ S      +  EGCLS+  Y    V
Sbjct: 64  SANQVGLNKRMCAIYYEDGDQTVEYALF-NPKLVSHSTSMIYLEQGEGCLSVDRYIPGYV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   I ++    +   +++   G  A  +QHE+DHL+GI+F D ++
Sbjct: 123 PRYEKIRIKANLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRIN 169


>gi|300768769|ref|ZP_07078665.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300493726|gb|EFK28898.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 141

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 9/118 (7%)

Query: 28  IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87
           + +L+D +    ++ + +G+AA  IGV  +++V+ L   A     +  INPKII     +
Sbjct: 32  LTDLLDTL--AAHTDNCVGMAANMIGVNKQIIVVQLGPFA-----IAMINPKIIDHHGTY 84

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
              +EGCLS+P  R    R   ITV+Y D + + Q    +   A  +QHELDH  G L
Sbjct: 85  ET-KEGCLSLPGERP-TSRYHQITVKYKDQHFKPQQQRFNDFTAQIIQHELDHCAGKL 140


>gi|300362713|ref|ZP_07058888.1| peptide deformylase [Lactobacillus gasseri JV-V03]
 gi|300353141|gb|EFJ69014.1| peptide deformylase [Lactobacillus gasseri JV-V03]
          Length = 137

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 7/100 (7%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           GLAA  IGV  R++ + +        P+V +NP I+  +D +  Y EGCLS+   R   +
Sbjct: 44  GLAANMIGVQKRIIALFVGPL-----PIVMLNPIIVKKTDKYLAY-EGCLSLEGERP-TE 96

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           R   ITV+Y + N + +       +A  +QHE+DH NGIL
Sbjct: 97  RYKKITVKYQNENFETRQQDFSDFVAEVIQHEVDHCNGIL 136


>gi|224542289|ref|ZP_03682828.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524831|gb|EEF93936.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM
           15897]
          Length = 137

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 11/138 (7%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
            F   +  + ++    I +D+ + +   L      + +G+A   IG   + V+I L+D  
Sbjct: 10  FFLSQVAEKATKEDLYIGTDLKDTLQAHLH-----ECVGMAGNMIG-YNKAVIIFLED-- 61

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
             +   V  NP+II  S ++   +EGCLS    ++ VKR   I V Y D + + +I    
Sbjct: 62  --EKMHVMYNPEIIKTSGNYHECEEGCLSHVGQKS-VKRYETIKVSYFDESFKKKIKTYT 118

Query: 128 GLLATCLQHELDHLNGIL 145
           G  A  +QHE DHL GIL
Sbjct: 119 GFTAQIIQHECDHLKGIL 136


>gi|291551092|emb|CBL27354.1| N-formylmethionyl-tRNA deformylase [Ruminococcus torques L2-14]
          Length = 136

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++ +++         +   NPKI+  +  +   +EGCLS+   R+  
Sbjct: 42  VGMAANMIGVKKRIIAVNMGSF-----NIAMFNPKIVKRTGAYET-EEGCLSLDGVRS-C 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   I V Y D N + +     G  A  +QHE+DH +GIL
Sbjct: 95  RRYQEIEVEYQDMNFKKKREKYSGWTAQIIQHEIDHCDGIL 135


>gi|322390858|ref|ZP_08064367.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
 gi|321142443|gb|EFX37912.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
          Length = 204

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 18/132 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS- 84
           M E +    G+GLAA Q+ +  R++ + + +      NP         V  NPK++  S 
Sbjct: 61  MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSV 120

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y   + + + I   G  +  +QHE+D
Sbjct: 121 QDAALGDGEGCLSVDRNVPGY---VVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEID 177

Query: 140 HLNGILFIDHLS 151
           H NGI+F D ++
Sbjct: 178 HTNGIMFYDRIN 189


>gi|296877265|ref|ZP_06901305.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
 gi|312867979|ref|ZP_07728183.1| peptide deformylase [Streptococcus parasanguinis F0405]
 gi|296431785|gb|EFH17592.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
 gi|311096383|gb|EFQ54623.1| peptide deformylase [Streptococcus parasanguinis F0405]
          Length = 204

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 18/132 (13%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS- 84
           M E +    G+GLAA Q+ +  R++ + + +      NP         V  NPK++  S 
Sbjct: 61  MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSV 120

Query: 85  -DDFSVYQEGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
            D      EGCLS+    P Y   V R A +TV Y   + + + I   G  +  +QHE+D
Sbjct: 121 QDAALGDGEGCLSVDRNVPGY---VVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEID 177

Query: 140 HLNGILFIDHLS 151
           H NGI+F D ++
Sbjct: 178 HTNGIMFYDRIN 189


>gi|15674896|ref|NP_269070.1| peptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21910126|ref|NP_664394.1| peptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28896175|ref|NP_802525.1| peptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50914040|ref|YP_060012.1| peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71903322|ref|YP_280125.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71910490|ref|YP_282040.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94990244|ref|YP_598344.1| peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|139473964|ref|YP_001128680.1| peptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|306827532|ref|ZP_07460815.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
 gi|13622035|gb|AAK33791.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21904318|gb|AAM79197.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28811426|dbj|BAC64358.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50903114|gb|AAT86829.1| Peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71802417|gb|AAX71770.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71853272|gb|AAZ51295.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94543752|gb|ABF33800.1| Peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|134272211|emb|CAM30457.1| peptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|304430330|gb|EFM33356.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
          Length = 136

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 38  VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97
             Y  + +G+AA  IG   R+V++ +         +V  NP +++    +   +E CLS+
Sbjct: 35  AFYRQECLGMAANMIGEQKRIVIVSMG-----FIDLVMFNPVMVSKKGIYQT-KESCLSL 88

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             YR   +R   ITV Y+D N + + +   GL A   QHELDHL GIL
Sbjct: 89  SGYRK-TQRYDKITVEYLDHNWRPKRLSLTGLTAQICQHELDHLEGIL 135


>gi|28379384|ref|NP_786276.1| peptide deformylase [Lactobacillus plantarum WCFS1]
 gi|254557520|ref|YP_003063937.1| peptide deformylase [Lactobacillus plantarum JDM1]
 gi|308181597|ref|YP_003925725.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28272223|emb|CAD65131.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1]
 gi|254046447|gb|ACT63240.1| peptide deformylase [Lactobacillus plantarum JDM1]
 gi|308047088|gb|ADN99631.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 136

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 9/118 (7%)

Query: 28  IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87
           + +L+D +    ++ + +G+AA  IGV  +++V+ L   A     +  INPKII     +
Sbjct: 27  LTDLLDTL--AAHTDNCVGMAANMIGVNKQIIVVQLGPFA-----IAMINPKIIDHHGTY 79

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
              +EGCLS+P  R    R   ITV+Y D + + Q    +   A  +QHELDH  G L
Sbjct: 80  ET-KEGCLSLPGERP-TSRYHQITVKYKDQHFKPQQQRFNDFTAQIIQHELDHCAGKL 135


>gi|313683120|ref|YP_004060858.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994]
 gi|313155980|gb|ADR34658.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994]
          Length = 273

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 5/152 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K L+ +PD  +R +S  I K + ++  L++NM + M   +   ++A+QI + Y  +++  
Sbjct: 3   KELITYPDERIRYISADIRKYDDELFELLENMRDTMEHHELNAISAIQIAIPYSAILLK- 61

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                 +N +  IN ++I+      + +        + A +KR   I V Y + N + + 
Sbjct: 62  ----EGENILELINARLISTEGVEEIDEVSPYFPKGFSAKIKRYGKIKVVYENRNGELRH 117

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           + A+G L+  LQ ++D L G   +D L + +R
Sbjct: 118 LDAEGELSQRLQRQIDFLFGGTLLDKLDKKER 149


>gi|42519881|ref|NP_965811.1| peptide deformylase [Lactobacillus johnsonii NCC 533]
 gi|41584171|gb|AAS09777.1| polypeptide deformylase [Lactobacillus johnsonii NCC 533]
          Length = 137

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 7/100 (7%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           GLAA  IGV  R++ + +        P+V +NP I+   D +  Y EGCLS+   R   +
Sbjct: 44  GLAANMIGVQKRIIALFVGPL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGERP-TE 96

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           R   ITV+Y + N + +        A  +QHE+DH NGIL
Sbjct: 97  RYKTITVKYQNENLETRQQSFSDFTAEVIQHEVDHCNGIL 136


>gi|227889181|ref|ZP_04006986.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
 gi|227850410|gb|EEJ60496.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
          Length = 137

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 10/141 (7%)

Query: 6   LVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           L+I  +  L+  S P  K +     +L D +L   Y     GLAA  IGV  R++ + + 
Sbjct: 5   LIIHDELSLKFKSLPATKQDLGAATDLKDTLLANKYR--AAGLAANMIGVQKRIIALFIG 62

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V +NP I+   D +  Y EGCLS+   R   +R   ITV+Y + N + +  
Sbjct: 63  PL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGERP-TERYKNITVKYQNENLETRQQ 115

Query: 125 YADGLLATCLQHELDHLNGIL 145
                 A  +QHE+DH NGIL
Sbjct: 116 SFSDFTAEVIQHEVDHCNGIL 136


>gi|94994165|ref|YP_602263.1| peptide deformylase [Streptococcus pyogenes MGAS10750]
 gi|94547673|gb|ABF37719.1| Peptide deformylase [Streptococcus pyogenes MGAS10750]
          Length = 136

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 38  VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97
             Y  + +G+AA  IG   R+V++ +         +V  NP +++    +   +E CLS+
Sbjct: 35  AFYRQECLGMAANMIGEQKRIVIVSMGF-----IDLVMFNPVMVSKKGIYQT-KESCLSL 88

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             YR   +R   ITV Y+D N + + +   GL A   QHELDHL GIL
Sbjct: 89  SGYRK-TQRYDKITVEYLDHNWRPKRLNLTGLTAQICQHELDHLEGIL 135


>gi|322377869|ref|ZP_08052358.1| peptide deformylase [Streptococcus sp. M334]
 gi|321281292|gb|EFX58303.1| peptide deformylase [Streptococcus sp. M334]
          Length = 136

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV   +++ +L        P+V  NP ++++   +   +EGCLS+   R   
Sbjct: 42  VGLAANMIGVQKCVIIFNLG-----LVPVVMFNPVLLSYEGLYET-EEGCLSLTGVRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           KR   I V Y D   Q Q +   G  A   QHELDHL G
Sbjct: 95  KRYETIRVAYRDSKWQEQTMILTGFPAQICQHELDHLEG 133


>gi|94988363|ref|YP_596464.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94992245|ref|YP_600344.1| peptide deformylase [Streptococcus pyogenes MGAS2096]
 gi|94541871|gb|ABF31920.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94545753|gb|ABF35800.1| Peptide deformylase [Streptococcus pyogenes MGAS2096]
          Length = 136

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 38  VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97
             Y  + +G+AA  IG   R+V++ +         +V  NP +++    +   +E CLS+
Sbjct: 35  AFYRQECLGMAANMIGEQKRIVIVSM-----GFIDLVMFNPVMVSKKGIYQT-KESCLSL 88

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             YR   +R   ITV Y+D N + + +   GL A   QHELDHL GIL
Sbjct: 89  SGYRK-TQRYDKITVEYLDHNWRPKRLNLTGLTAQICQHELDHLEGIL 135


>gi|312868505|ref|ZP_07728705.1| peptide deformylase [Streptococcus parasanguinis F0405]
 gi|311096250|gb|EFQ54494.1| peptide deformylase [Streptococcus parasanguinis F0405]
          Length = 185

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R ++I +         +V  NP ++     +   +EGCLS+   R   
Sbjct: 91  VGLAANMIGVKKRAIIIRMGSEN-----LVLFNPVLLEKKKPYQT-EEGCLSLVGSRPTT 144

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I+V Y D N + + I+  G  A   QHE+DHL GI+
Sbjct: 145 -RYEEISVAYRDVNWKAKTIHLSGFPAQICQHEMDHLEGII 184


>gi|139438029|ref|ZP_01771582.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC
           25986]
 gi|133776226|gb|EBA40046.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC
           25986]
          Length = 136

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 13/118 (11%)

Query: 30  NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV 89
           +L+D + E  +  + +GLAA  IGV  R++ +   + A     ++  NP+I+   +  + 
Sbjct: 29  DLLDTLHE--HEHECVGLAANMIGVRKRIICVKDGNRA-----LLMYNPQIL---EQVNA 78

Query: 90  YQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           YQ  EGCLS+   R    R   I V Y+D N  H+I    G  A  +QHE+DH NGI+
Sbjct: 79  YQTSEGCLSLIGERP-CTRYRRIKVEYLDENFVHRIKNFSGYTAEVIQHEIDHCNGIV 135


>gi|313884730|ref|ZP_07818486.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620098|gb|EFR31531.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 188

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPM------VFINPKIITFSDDFSVYQ--EGCL 95
           G+GLAA Q+G   ++  + L+ +    +        + INP+II  S   +  +  EGCL
Sbjct: 58  GVGLAAPQLGYDKKIFCVYLEAYDEENDSTEVMMDEIVINPRIIKHSVKKAALKDGEGCL 117

Query: 96  SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           S+  +    V R   +T+RY + +     I      A   QHE DHL GI+F +H+S
Sbjct: 118 SVNREVPGLVPRPKRVTLRYYNLDGDELEIKLTDYEAMVFQHEFDHLKGIMFYEHIS 174


>gi|222152449|ref|YP_002561624.1| peptide deformylase [Streptococcus uberis 0140J]
 gi|254767604|sp|B9DTD6|DEF_STRU0 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|222113260|emb|CAR40782.1| polypeptide deformylase [Streptococcus uberis 0140J]
          Length = 204

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 16/131 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI---DLQDHAHRKNP--------MVFINPKIITF 83
           M E +    G+GLAA Q+ +  R++ +   +++D     NP         +  NPKI+  
Sbjct: 61  MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNMEDS--EGNPPKEAYSLQEIMYNPKIVAH 118

Query: 84  SDDFSVYQ--EGCLSIPDY-RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           S   +     EGCLS+       V R + +TV Y D       I   G  A  +QHE+DH
Sbjct: 119 SVQEAALADGEGCLSVDRLVEGYVVRHSRVTVDYYDKKGDKHRIKLKGYNAIVVQHEIDH 178

Query: 141 LNGILFIDHLS 151
           +NGI+F D ++
Sbjct: 179 INGIMFYDRIN 189


>gi|154505120|ref|ZP_02041858.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149]
 gi|153794599|gb|EDN77019.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149]
          Length = 159

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 6/102 (5%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           G  +AA QIGV  RL+ I L D      P V INP++    ++     + C+S P+    
Sbjct: 49  GRAIAAPQIGVQKRLICI-LTDQ-----PYVIINPRLEFVGNEMMELMDDCMSFPNLLVR 102

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           V+R     + Y+D N + Q +Y +  ++  +QHE DHL+GIL
Sbjct: 103 VRRYRRCILHYLDENWKEQEMYLEDDMSELIQHEYDHLDGIL 144


>gi|165933262|ref|YP_001650051.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|165908349|gb|ABY72645.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
          Length = 119

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 35  IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 94

Query: 66  HAHRKNPMVFINPKIITFSDDFSVY 90
           + ++ +P+VFINP I  FS++   +
Sbjct: 95  N-NKSSPIVFINPDITYFSEETQTF 118


>gi|229826625|ref|ZP_04452694.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC
           49176]
 gi|229789495|gb|EEP25609.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC
           49176]
          Length = 138

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 10/134 (7%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR  S P+ K   D M +++++ + +  Y+ + +G++A  IG+   ++ I  ++      
Sbjct: 12  LRLKSEPVTK---DDMAVVEDLKDTLKAYADECVGMSANMIGINKAVIAIQPEN---SDV 65

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V +NPKII  S  +   +EGC+ +   R  V R   IT+ Y D + +  I    G +A
Sbjct: 66  MTVMLNPKIIKKSGAYET-EEGCMCLEGERKAV-RHRNITLEYFDEDFKKHIKLYSGYIA 123

Query: 132 TCLQHELDHLNGIL 145
             ++HE DHL GI+
Sbjct: 124 EIIEHECDHLEGII 137


>gi|157828546|ref|YP_001494788.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|157801027|gb|ABV76280.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila
          Smith']
          Length = 94

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 6  LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
          +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66 HAHRKNPMVFINPKIITFSDDFSVY 90
          + ++ +P+VFINP I  FS++   +
Sbjct: 70 N-NKSSPIVFINPDITYFSEETQTF 93


>gi|269114884|ref|YP_003302647.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis]
 gi|268322509|emb|CAX37244.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis
           ATCC 23114]
          Length = 185

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 23/167 (13%)

Query: 6   LVIFPDPILRRVSRPIEK---------INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           LV  P+ +LR  S+ +E          I   I ++ D+          +G+AAVQ G+L 
Sbjct: 9   LVQLPEKVLRNKSKNVELPLTAEDDLLIQKMIFHVDDSQTPQTKFRPAVGVAAVQYGILK 68

Query: 57  RLVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSIPDYRAD----VKR 106
            +  + ++D    +N  +F    INP +++ S+     QEG  CLS+ +  A     V R
Sbjct: 69  NIFYVMVKDD---QNNYIFRDALINPIMLSHSNHKISLQEGEGCLSVKESDAGQEGFVYR 125

Query: 107 SAFITVRYMDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSR 152
            + + ++      + + IY   G  A  LQHE DHL G LFID +++
Sbjct: 126 YSRVVIKAYSYFEKKEKIYDVSGYPAIVLQHEYDHLQGKLFIDRINK 172


>gi|319938534|ref|ZP_08012927.1| peptide deformylase [Coprobacillus sp. 29_1]
 gi|319806298|gb|EFW02974.1| peptide deformylase [Coprobacillus sp. 29_1]
          Length = 137

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 38  VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97
           V +    +G+AA  IG   R++++      +  + +V INP I+  S  +    EGCLS 
Sbjct: 35  VAHEDHCVGMAANMIGYHKRIIIV-----KNNNDHLVMINPIILKTSGRYYDTHEGCLSH 89

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
              +A VKR   I V Y D + + +I   +G +A  +QHE+DH  GIL
Sbjct: 90  IGEKA-VKRYEKIKVEYKDIHFKVKIKTFEGYVAQIIQHEIDHCQGIL 136


>gi|329668141|gb|AEB94089.1| polypeptide deformylase [Lactobacillus johnsonii DPC 6026]
          Length = 137

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 7/100 (7%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           GLAA  IGV  R++ + +        P+V +NP I+   D +  Y EGCLS+   R   +
Sbjct: 44  GLAANMIGVQKRIIALFVGPL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGERP-TE 96

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           R   ITV+Y + N + +        A  +QHE+DH NGIL
Sbjct: 97  RYKNITVKYQNENLETRQQSFSDFTAEVIQHEVDHCNGIL 136


>gi|229586292|ref|YP_002844793.1| Polypeptide deformylase [Rickettsia africae ESF-5]
 gi|228021342|gb|ACP53050.1| Polypeptide deformylase [Rickettsia africae ESF-5]
          Length = 224

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95
           GLAA QIG+   +++  + + A  K             ++INP       D     E C 
Sbjct: 84  GLAAPQIGISKCIIIFAVHEDAELKKWHPDLKDTIPKTIWINPSYKPIGIDKHEDYEECF 143

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           S+ +    V R   I     D N       A+G LA  +QHE+DHLNG +F+D+++  K
Sbjct: 144 SVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKK 202


>gi|56808912|ref|ZP_00366621.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes
           M49 591]
 gi|209559224|ref|YP_002285696.1| peptide deformylase [Streptococcus pyogenes NZ131]
 gi|209540425|gb|ACI61001.1| Peptide deformylase [Streptococcus pyogenes NZ131]
          Length = 136

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 11/110 (10%)

Query: 38  VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCL 95
             Y  +  G+AA  IG   R+V++ +         +V  NP +++      +YQ  E CL
Sbjct: 35  AFYRQECFGMAANMIGEQKRIVIVSM-----GFIDLVMFNPVMVSKK---GIYQTKESCL 86

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           S+  YR   +R   ITV Y+D N + + +   GL A   QHELDHL GIL
Sbjct: 87  SLSGYRK-TQRYDKITVEYLDHNWRPKRLSLTGLTAQICQHELDHLEGIL 135


>gi|296875884|ref|ZP_06899945.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
 gi|296433125|gb|EFH18911.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
          Length = 136

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R ++I +         +V  NP ++     +   +EGCLS+   R   
Sbjct: 42  VGLAANMIGVKKRAIIIRMGSEN-----LVLFNPVLLEKKKPYQT-EEGCLSLVGSRPTT 95

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I+V Y D N + + I+  G  A   QHE+DHL GI+
Sbjct: 96  -RYEEISVAYRDVNWKAKKIHLSGFPAQICQHEMDHLEGII 135


>gi|321463123|gb|EFX74141.1| hypothetical protein DAPPUDRAFT_307445 [Daphnia pulex]
          Length = 234

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 17/155 (10%)

Query: 11  DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DP LR  S  +  ++++S+ I N++  +  VM     IG++A QIG+  R+++I++ D  
Sbjct: 52  DPTLRLKSSEVVLDELSSERIKNILLVLRGVMKHYKAIGISAPQIGIPLRIIMIEIPDSL 111

Query: 68  HRK-------------NPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             K              P  VFINP +       +++ E C S+    A V R   + V+
Sbjct: 112 VEKFGPETCKTREIVPTPFKVFINPVMQVKDFKKTLFPEACESLKGISAIVPRYRAVHVK 171

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             + +       A G  A  +QHE+DHL+G ++ D
Sbjct: 172 GYEYDGSPTEWDATGWAARIVQHEMDHLDGQIYTD 206


>gi|227515637|ref|ZP_03945686.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
 gi|227086067|gb|EEI21379.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
          Length = 136

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 12/136 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +L++ +RP    +  +   +   L   +    IG+AA  IG    ++ + L        P
Sbjct: 11  VLQQPARPATSADRQLAEALVATL-TAHQDHCIGMAANMIGFPVSIIAVSL-------GP 62

Query: 73  M--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +    +NP+++  +  +   +EGCLS+   R+   R   ITV Y D     Q +   GL 
Sbjct: 63  VNVAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTGAQQELELTGLA 120

Query: 131 ATCLQHELDHLNGILF 146
           A  +QHE DHL GIL 
Sbjct: 121 AQAVQHECDHLRGILI 136


>gi|77406283|ref|ZP_00783349.1| polypeptide deformylase [Streptococcus agalactiae H36B]
 gi|77175095|gb|EAO77898.1| polypeptide deformylase [Streptococcus agalactiae H36B]
          Length = 136

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IG   R+++I++         +V  NP ++  SD +   +E CLS+   R+  
Sbjct: 42  VGMAANMIGSXKRVIIINV-----GITNLVMXNPVLVAKSDPYET-EESCLSLVGCRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   IT+ Y D N + Q I      A   QHELDHL GIL
Sbjct: 95  QRYHHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGIL 135


>gi|70726701|ref|YP_253615.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435]
 gi|68447425|dbj|BAE05009.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 162

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + LV    P+L + ++PI+  ++ + +L+ ++ + +Y+ +   L A QIG+  ++ +
Sbjct: 1   MAIQKLVQSTHPVLTKQAQPIKAYDATLKDLLLDLEDTLYAEEASALCAPQIGISKQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +  +   NPKI + S+D  +  EG +++P    +V+RS  IT+   D    
Sbjct: 61  IDME----VEGLLQLFNPKIKSESNDKIIDLEGSVNLPGIYGEVERSKMITIEANDLEGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              + A   +A  + H +D +NGI F      L  D
Sbjct: 117 TIELTAYDDVARMILHIVDQMNGIPFTKRAQHLLTD 152


>gi|304385668|ref|ZP_07368012.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
 gi|304328172|gb|EFL95394.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
          Length = 136

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            +GLAA  IGV  +++ + +         +  +NPK+   S  +   +EGCLS+   R+ 
Sbjct: 41  AVGLAANMIGVKKQIIAVSIGVM-----NIAMLNPKLTKKSHPYQA-KEGCLSLTGERST 94

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             R   I V+Y D N + Q  +  G +A  +QHE+DH  GIL
Sbjct: 95  T-RYKEIEVQYQDLNFKKQTQHFSGWIAEIIQHEIDHCAGIL 135


>gi|260663513|ref|ZP_05864403.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
 gi|260552054|gb|EEX25107.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
          Length = 136

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 12/136 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +L++ +RP    +  +   +   L   +    IG+AA  IG    ++ + L        P
Sbjct: 11  VLQQPARPATNADRQLAEALVATL-TAHQDHCIGMAANMIGFPVSIIAVSL-------GP 62

Query: 73  M--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +    +NP+++  +  +   +EGCLS+   R+   R   ITV Y D     Q +   GL 
Sbjct: 63  VNVAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTGAQQELELTGLA 120

Query: 131 ATCLQHELDHLNGILF 146
           A  +QHE DHL GIL 
Sbjct: 121 AQAVQHECDHLRGILI 136


>gi|316983220|pdb|3L87|A Chain A, The Crystal Structure Of Smu.143c From Streptococcus
           Mutans Ua159
          Length = 238

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 25/166 (15%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRL 58
           P LR V++ +   +N D + L + ML+ + ++             G+GLAA Q+ +  R+
Sbjct: 59  PTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRI 118

Query: 59  VVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY-RADVKR 106
           + + + +   +  NP         V  NP+II  S  D      EG LS+       V R
Sbjct: 119 IAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGXLSVDRVVEGYVIR 178

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + +T+ Y D N+  + +   G  +  +QHE+DH NGI+F D ++ 
Sbjct: 179 HSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINE 224


>gi|222152925|ref|YP_002562102.1| peptide deformylase [Streptococcus uberis 0140J]
 gi|222113738|emb|CAR41729.1| peptide deformylase [Streptococcus uberis 0140J]
          Length = 136

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 14/145 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +VK PL +     L   ++   KI +D+++ +       +  + +G+AA  IG   R+++
Sbjct: 5   IVKDPLFLQQKSAL--ATKEDIKIGTDLLDTL-----AYHRENCLGMAANMIGESKRIII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I +         +V  NP II+  D F   +E CLS+   R    R   I V Y+D +  
Sbjct: 58  ISMG-----FVDLVMFNPMIISKKDSFHA-EESCLSLSGSRK-TTRYKEIKVDYLDHHWM 110

Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145
            + +   GL A   QHELDHL GIL
Sbjct: 111 KKSLTLTGLPAQVCQHELDHLEGIL 135


>gi|67458516|ref|YP_246140.1| polypeptide deformylase [Rickettsia felis URRWXCal2]
 gi|67004049|gb|AAY60975.1| Polypeptide deformylase [Rickettsia felis URRWXCal2]
          Length = 224

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 10/119 (8%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKN----------PMVFINPKIITFSDDFSVYQEGCL 95
           GLAA QI +   +++  + ++   K             ++INP       D     EGC 
Sbjct: 84  GLAAPQISISKCIIIFAVHENEELKKWRPNLKDTMPKTIWINPSYKPIGIDKHEDYEGCF 143

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           S+ +    V R   I     D N       A+G LA  +QHE+DHLNG +F+D+ +  K
Sbjct: 144 SVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYAAPKK 202


>gi|306831575|ref|ZP_07464733.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426360|gb|EFM29474.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 136

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R +++++         +V  NP ++  S  F   +E CLS+   R   
Sbjct: 42  VGMAANMIGVKKRAIIVNMGGA-----DLVMFNPVLLNKSLPFDT-KESCLSLTGARP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   I V ++D N   Q +   GL A   QHELDHL GI+
Sbjct: 95  RRYQRIEVSFLDKNWNQQTLTLTGLPAQICQHELDHLEGII 135


>gi|291390393|ref|XP_002711708.1| PREDICTED: peptide deformylase-like [Oryctolagus cuniculus]
          Length = 126

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%)

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V +NP +         + EGC S+  + A V R   + +  +D   +  +  A G  A  
Sbjct: 35  VLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEQVVWPASGWTARI 94

Query: 134 LQHELDHLNGILFIDHL 150
           +QHE+DHL G LFID +
Sbjct: 95  IQHEMDHLQGCLFIDKM 111


>gi|270290078|ref|ZP_06196304.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
 gi|270281615|gb|EFA27447.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
          Length = 136

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            +GLAA  IGV  +++ + +         +  +NPK+   S  +   +EGCLS+   R+ 
Sbjct: 41  AVGLAANMIGVKKQIIAVSIGVM-----NIAMLNPKLTKKSHPYQA-KEGCLSLAGERST 94

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             R   I V+Y D N + Q  +  G +A  +QHE+DH  G+L
Sbjct: 95  T-RYKEIEVQYQDLNFKKQTQHFSGWIAEIIQHEIDHCAGVL 135


>gi|302876100|ref|YP_003844733.1| formylmethionine deformylase [Clostridium cellulovorans 743B]
 gi|307686823|ref|ZP_07629269.1| peptide deformylase [Clostridium cellulovorans 743B]
 gi|302578957|gb|ADL52969.1| formylmethionine deformylase [Clostridium cellulovorans 743B]
          Length = 136

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 14/140 (10%)

Query: 12  PILRRV----SRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQD 65
           PI++ V     +  E   +DI+ ++D++++ + S   + +GLAA  IGV  R++V  + D
Sbjct: 4   PIVKDVLFLGQKSEEATKNDIV-VVDDLIDTLRSNLENCVGLAANMIGVKKRILVFTIGD 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 PM  INP I+   +     +E CLS+  +R   KR   I V Y+D   + Q   
Sbjct: 63  IIV---PM--INPVILK-KEKLYETEESCLSLIGFRK-TKRYEMIEVEYLDRAFKKQKQV 115

Query: 126 ADGLLATCLQHELDHLNGIL 145
             G  A  +QHE+DH  GI+
Sbjct: 116 FTGFTAQIIQHEMDHFEGII 135


>gi|315037295|ref|YP_004030863.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
 gi|325955774|ref|YP_004286384.1| peptide deformylase [Lactobacillus acidophilus 30SC]
 gi|312275428|gb|ADQ58068.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
 gi|325332339|gb|ADZ06247.1| peptide deformylase [Lactobacillus acidophilus 30SC]
 gi|327182600|gb|AEA31047.1| peptide deformylase [Lactobacillus amylovorus GRL 1118]
          Length = 137

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 44  GIGLAAVQIGVLYRLVV--IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
            +GLAA  IG   R++   + L        P+V +NP+I   S ++ + +EGCLS+   R
Sbjct: 42  AVGLAANMIGKNKRIIAFYVGLL-------PLVMLNPQITKKSGEY-LTEEGCLSLSGER 93

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
              KR   ITV Y D N   +       +A  +QHE+DH  GIL
Sbjct: 94  -KTKRYRTITVTYQDMNLNTKTQEFTDFIAEVIQHEVDHCEGIL 136


>gi|182419964|ref|ZP_02951200.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237665638|ref|ZP_04525626.1| polypeptide deformylase family protein [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376215|gb|EDT73800.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237658585|gb|EEP56137.1| polypeptide deformylase family protein [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 137

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 9/131 (6%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
             + +E    D+  +ID+M++   +   I  GLA+ QIG   R++V  + D       + 
Sbjct: 13  TQKAVEATKKDLY-IIDDMIDTAKANRDICVGLASNQIGENVRIIVALMGDEF-----IP 66

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
            +NPKIIT S      +E CLS    +   + S+ I V Y D N + +     G +A  +
Sbjct: 67  LVNPKIITHSVATYEDEEACLSHEGTKKATRYSS-IEVEYRDRNFKKRKNIFKGFVAQII 125

Query: 135 QHELDHLNGIL 145
           QHE+DH  GIL
Sbjct: 126 QHEMDHCEGIL 136


>gi|291542377|emb|CBL15487.1| N-formylmethionyl-tRNA deformylase [Ruminococcus bromii L2-63]
          Length = 136

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++ I+          +V  NP+II+   +F   +EGCLS+   R  V
Sbjct: 42  VGMAANMIGVAKRIIAIN-----DNGKYLVMFNPEIISKFGEFET-EEGCLSLDGERKTV 95

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V+Y + N +          A  +QHE+DH NGIL
Sbjct: 96  -RYKTIKVKYFNENFKQIKRSFSDFTAQIIQHEIDHCNGIL 135


>gi|160935285|ref|ZP_02082667.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441643|gb|EDP19343.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC
           BAA-613]
          Length = 173

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 20/154 (12%)

Query: 2   VKKPLVIFPDPILRRVSRPI--------EKINSDIMNLIDNMLEVMYSTDGIG--LAAVQ 51
           V++ +++  +P L   S+ +        E++  D   L D +L    +  G+G  +AA Q
Sbjct: 14  VERTILLLGNPELYEASQEVKIEELHQMEQVRED---LKDTLL-AFRARYGVGRAIAAPQ 69

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IGV  R++      + H   P++FINP++     +     + C+S PD    VKR     
Sbjct: 70  IGVKKRVI------YRHLDTPVLFINPRLTFPEQEMIDVLDDCMSFPDLLVRVKRYKRCI 123

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           + Y D       +   G ++  +QHE DHL+GIL
Sbjct: 124 IYYKDLEWNDCSMELKGDMSELIQHEYDHLDGIL 157


>gi|296454738|ref|YP_003661881.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184169|gb|ADH01051.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 134

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 4/101 (3%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++V   +D   R    V +NP +IT SD     QEGCLS+   R  +
Sbjct: 37  VGMAANMIGVSKRIIVFVDEDLGGRIT--VMLNP-VITASDGAFDTQEGCLSLTGERRTL 93

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y D   + +     G  A  +QHE+DH NGI+
Sbjct: 94  -RCRRIEVNYEDRRFRARHATFTGWTAQIIQHEVDHCNGII 133


>gi|166030770|ref|ZP_02233599.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC
           27755]
 gi|166029352|gb|EDR48109.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC
           27755]
          Length = 136

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 10/133 (7%)

Query: 14  LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           L + S P  + +  + ++L+D +    +    +G+AA  IGV  R++ +++       N 
Sbjct: 12  LGQKSEPATQADKQVAIDLLDTLK--AHEEGCVGMAANMIGVKKRIIAVNM----GFMNV 65

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            +F NP+I+  S  +   +EGCLS+   R    R   I + Y D N + Q     G +A 
Sbjct: 66  AMF-NPRIVKKSGSYQT-EEGCLSLIGVRP-CTRYQEIELEYQDMNWKKQRQKYTGWIAQ 122

Query: 133 CLQHELDHLNGIL 145
            +QHE+DH NGI+
Sbjct: 123 IIQHEVDHCNGII 135


>gi|317482099|ref|ZP_07941123.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916458|gb|EFV37856.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 139

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           P E        +I+++++ + +     +G+AA  IGV  R++V   +D   R    V +N
Sbjct: 15  PSEAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRIT--VMLN 72

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
           P +IT SD     QEGCLS+   R  + R   I V Y D   + +     G  A  +QHE
Sbjct: 73  P-VITASDGAFDTQEGCLSLTGERRTL-RYRRIEVNYEDRRFRARHATFTGWTAQIIQHE 130

Query: 138 LDHLNGIL 145
           +DH NGI+
Sbjct: 131 VDHCNGII 138


>gi|288905492|ref|YP_003430714.1| polypeptide deformylase [Streptococcus gallolyticus UCN34]
 gi|288732218|emb|CBI13783.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34]
          Length = 136

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++++++         +V  NP ++  S  F   +E CLS+   R   
Sbjct: 42  VGMAANMIGVKKRVIIVNMG-----VADLVMFNPVLLNKSLPFDT-KESCLSLTGARP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   I V ++D N   Q +   GL A   QHELDHL GI+
Sbjct: 95  RRYQKIEVSFLDKNWNQQTLTLTGLPAQICQHELDHLEGII 135


>gi|322372342|ref|ZP_08046878.1| peptide deformylase [Streptococcus sp. C150]
 gi|321277384|gb|EFX54453.1| peptide deformylase [Streptococcus sp. C150]
          Length = 136

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 7/106 (6%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           Y    +G+AA  IGV  R++++++         +V  NP +++ S  F   +E CLS+  
Sbjct: 37  YKDACVGMAANMIGVKKRVIIVNIGFVN-----LVMFNPVLVSKSSLFQT-EESCLSLEG 90

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   +R   I V Y+D     + +   G+LA  +QHELDHL GI+
Sbjct: 91  SRP-TRRYESIEVAYLDEQWMPKQLSFSGMLAQIIQHELDHLEGII 135


>gi|323466783|gb|ADX70470.1| Peptide deformylase [Lactobacillus helveticus H10]
          Length = 184

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 28/173 (16%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYR 57
           D +LR+V++P+    SD    L ++M+E + ++             G+GLAA Q+G   +
Sbjct: 12  DLVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAPQVGEGVQ 71

Query: 58  LVVIDLQDHAHRKNPMVF----INPKIITFSDDFSVYQEG--CLSIPDY-RADVKRSAFI 110
           +  + + D    K  ++F    +NP+I++ S   +   EG  CLS+       V R   +
Sbjct: 72  MAALLVPDD---KGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPRPDKL 128

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-----LKRDMI 158
           T+ Y   + + + I      A    HE+DHLNG LF D +++     LK D +
Sbjct: 129 TIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKEDTV 181


>gi|317499718|ref|ZP_07957976.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893024|gb|EFV15248.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 136

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRA 102
           +G+AA  IGV  +++V+ +        P  F  INPKI   S  F   +EGCLS+   R 
Sbjct: 42  VGMAANMIGVKKKIIVVAV-------GPFQFAMINPKITKKSGVFET-EEGCLSLDGVRP 93

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             KR   I V Y+D + + Q     G  A  +QHE+DH  GI+
Sbjct: 94  -CKRYKEIEVDYLDQDFKKQHGKYSGWTAQIIQHEIDHCKGIV 135


>gi|213425785|ref|ZP_03358535.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213618713|ref|ZP_03372539.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 53

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 35/45 (77%)

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 5   LEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 49


>gi|255974264|ref|ZP_05424850.1| peptide deformylase [Enterococcus faecalis T2]
 gi|255967136|gb|EET97758.1| peptide deformylase [Enterococcus faecalis T2]
          Length = 89

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 5  PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
          P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI++ 
Sbjct: 4  PVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEID 63

Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQ 91
          + + R      INP II   +   +++
Sbjct: 64 EESGR---FELINPVIIEKKEPVLMWK 87


>gi|239621615|ref|ZP_04664646.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515490|gb|EEQ55357.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 128

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           P E        +I+++++ + +     +G+AA  IGV  R++V   +D   R    V +N
Sbjct: 4   PSEAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRIT--VMLN 61

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
           P +IT SD     QEGCLS+   R  + R   I V Y D   + +     G  A  +QHE
Sbjct: 62  P-VITASDGAFDTQEGCLSLTGERRTL-RYRRIEVNYEDRRFRARHATFTGWTAQIIQHE 119

Query: 138 LDHLNGIL 145
           +DH NGI+
Sbjct: 120 VDHCNGII 127


>gi|157150232|ref|YP_001451024.1| peptide deformylase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075026|gb|ABV09709.1| formylmethionine deformylase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 136

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IG   R+++       +   P++  NP +   S  +   +EGCLS+   R+  
Sbjct: 42  VGLAANMIGDKKRVIIF-----MYGMVPIIMFNPILRAKSGPYQT-EEGCLSLVGSRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   ITV Y+D N Q Q I      A   QHELDHL GIL
Sbjct: 95  TRYQEITVDYLDRNWQPQTITLKDFPAQICQHELDHLEGIL 135


>gi|290476474|ref|YP_003469379.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
 gi|289175812|emb|CBJ82615.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
          Length = 62

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 39/57 (68%)

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           + V  +D + +  ++ ++  L+  +QHE+DHLNGI+FID+LS LKR M  KK+ K +
Sbjct: 1   MKVEALDRHGKAMVVESEDFLSIVMQHEIDHLNGIVFIDYLSPLKRQMALKKVKKFL 57


>gi|323341211|ref|ZP_08081458.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
 gi|323091405|gb|EFZ34030.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
          Length = 136

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 11/103 (10%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIPDYRA 102
           +G+AA  IG+  R++            P++ INP+I   +  F  Y  +EGCLS+   R 
Sbjct: 42  VGMAANMIGINKRIIACFFGPF-----PVLMINPEI---TRKFGPYTAEEGCLSLEGKRV 93

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             KR   I V Y+D N   Q    D   A  +QHE+DH NGIL
Sbjct: 94  -AKRFKHIEVTYLDENFAKQRQKLDDFNAQIVQHEIDHCNGIL 135


>gi|116493404|ref|YP_805139.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745]
 gi|116103554|gb|ABJ68697.1| N-formylmethionyl-tRNA deformylase [Pediococcus pentosaceus ATCC
           25745]
          Length = 136

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 10/141 (7%)

Query: 7   VIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           VI    IL + S P  K + S +M+L+D +     S   +G+AA  IGV  R++V+ +  
Sbjct: 5   VIHDQQILSQTSIPATKQDLSVVMDLMDTLKA--NSERCVGMAANMIGVHKRIIVVTM-- 60

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 PM  INP I+   + ++  +EGCLS+   R+   R   I V+Y+D   +     
Sbjct: 61  -GMMNVPM--INPVILKKGNPYTT-EEGCLSLTGERS-TTRYDEIEVQYLDLEFKKHTQE 115

Query: 126 ADGLLATCLQHELDHLNGILF 146
               +A  +QHE+DH +GI+ 
Sbjct: 116 FKEFIAQIIQHEVDHCDGIII 136


>gi|160914591|ref|ZP_02076805.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991]
 gi|158433131|gb|EDP11420.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991]
          Length = 139

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV   ++    ++    +   V +NP II  S       EGCLS+   R + 
Sbjct: 42  VGMAANMIGVQKCIIAFLNKESGQYE---VMLNPVIIKTSGIAYRVMEGCLSLAGER-EA 97

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           KR   I V+Y D + + +I    G  A  +QHE+DH NGIL
Sbjct: 98  KRYPQIKVQYYDTDMKLKIKSYKGFTAQIIQHEIDHCNGIL 138


>gi|89900986|ref|YP_523457.1| peptide deformylase [Rhodoferax ferrireducens T118]
 gi|89345723|gb|ABD69926.1| Peptide deformylase [Rhodoferax ferrireducens T118]
          Length = 186

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 26/156 (16%)

Query: 11  DPILRRVSRPIEKINSDIMNL-IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           DP L R++ P+   ++D ++L I +ML+ M + DG GLAA QIGV  +LV+      ++ 
Sbjct: 11  DPRLLRIAPPVTLFDTDELHLLISDMLDTMLAADGAGLAAPQIGVDLQLVIFG----SNA 66

Query: 70  KNP----------MVFINPKIITF---SDDFSVYQ----EGCLSIPDYRADVKRSAFITV 112
           +NP           V +NP I       +D +  Q    EGCLS+P  RA V R  F  +
Sbjct: 67  RNPRYPQAPVVPQTVLLNPVITPLPPSENDATPLQVEDWEGCLSVPGLRAMVPR--FARI 124

Query: 113 RYMDCNAQHQII--YADGLLATCLQHELDHLNGILF 146
           RY   +     I    +G  A  +QHE DHL G L+
Sbjct: 125 RYTGFDQYGDPINRTVEGFHARVVQHECDHLIGKLY 160


>gi|227530489|ref|ZP_03960538.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
 gi|227349594|gb|EEJ39885.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
          Length = 136

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSI 97
           +  + IG+AA  I +   +++  L        P  MV  NP+I    + +    EGCLS+
Sbjct: 37  HHAECIGMAANMISINKAIIIASL-------GPINMVMYNPQITQKQEPYQTA-EGCLSL 88

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           P  R  V R   I V + D N   Q +    + A  +QHE+DHLNGIL 
Sbjct: 89  PGKRT-VTRYRQIKVTFRDQNWHLQTLQLSDIAAEIIQHEIDHLNGILI 136


>gi|325978482|ref|YP_004288198.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|325178410|emb|CBZ48454.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 136

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R +++++         +V  NP ++  S  F   +E CLS+   R   
Sbjct: 42  VGMAANMIGVKKRAIIVNMG-----VADLVMFNPVLLNKSLPFDT-KESCLSLTGARP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   I V ++D N   Q +   GL A   QHELDHL GI+
Sbjct: 95  RRYQRIEVSFLDKNWNQQTLTLTGLPAQICQHELDHLEGII 135


>gi|295425141|ref|ZP_06817846.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
 gi|295065200|gb|EFG56103.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
          Length = 200

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 23/162 (14%)

Query: 11  DPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD------------GIGLAAVQIGV--- 54
           +P+LR+V++P+    SD    L  +M+E + ++             G+GLAA Q+     
Sbjct: 28  NPVLRKVAQPLTFPLSDHYKQLAKDMMEYLINSQDPKIAEKHQLRAGVGLAAPQVDESVQ 87

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRAD--VKRSAFI 110
           +  L+V D + +   K    F+NP+II+ S       EG  CLS+ D   D  V R   +
Sbjct: 88  MASLLVPDDKGNILFKE--TFVNPEIISESVRKVCLSEGEGCLSV-DKEIDGYVPRPDKL 144

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 145 TIHYFTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 186


>gi|184155771|ref|YP_001844111.1| peptide deformylase [Lactobacillus fermentum IFO 3956]
 gi|183227115|dbj|BAG27631.1| polypeptide deformylase [Lactobacillus fermentum IFO 3956]
          Length = 136

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 12/136 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +L++ +RP    +  +   +   L   +    IG+AA  IG    ++ + L        P
Sbjct: 11  VLQQPARPATSADRQLAEALVATL-TAHQDHCIGMAANMIGFPVSIIAVSL-------GP 62

Query: 73  M--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           +    +NP+++  +  +   +EGCLS+   R+   R   ITV Y D     + +   GL 
Sbjct: 63  VNVAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTGAQKELELTGLA 120

Query: 131 ATCLQHELDHLNGILF 146
           A  +QHE DHL GIL 
Sbjct: 121 AQAVQHECDHLRGILI 136


>gi|257064918|ref|YP_003144590.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
 gi|256792571|gb|ACV23241.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
          Length = 136

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 10/133 (7%)

Query: 14  LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           LR  S P    +  +  +L+D +    +S + +G+AA  IGV  R++V D     HR   
Sbjct: 12  LRAPSSPATVADRSVGQDLMDTLR--FHSHECVGMAANMIGVAKRIIVFD-DAGTHR--- 65

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            +  NP+I   S+ +   +EGCLS+   R    R   I V + D     +    +G  A 
Sbjct: 66  -LMYNPEITAKSEPYQT-EEGCLSLTGRRP-ATRYRRIEVTFRDERFASRTEAFEGWTAQ 122

Query: 133 CLQHELDHLNGIL 145
            +QHE+DH NGI+
Sbjct: 123 IIQHEIDHCNGIV 135


>gi|238922278|ref|YP_002935792.1| hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750]
 gi|238873950|gb|ACR73658.1| Hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750]
          Length = 136

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 20/150 (13%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD---IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           MVKK   I  DP      + ++   SD   + +L+D ++  +     +G+AA  IGV   
Sbjct: 1   MVKK---IVKDPFFL-AQKSVDATESDKQVVTDLLDTLIANLDHC--VGMAANMIGVKKN 54

Query: 58  LVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ++V+          P  F  INP I   S ++   +EGCLS+   R    R   I V Y+
Sbjct: 55  IIVV-------AAGPFQFPMINPVITNKSGEYQT-EEGCLSLEGVRP-CTRYQDIEVDYL 105

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           D N + Q     G  A  +QHE+DH NG++
Sbjct: 106 DQNFKKQHRKYSGWTAQIIQHEIDHCNGVV 135


>gi|226322583|ref|ZP_03798101.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758]
 gi|225209077|gb|EEG91431.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758]
          Length = 136

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 8/104 (7%)

Query: 43  DG-IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           DG +G+AA  IGV   ++ +++       N  +F NPKI+  +  +   +EGCLS+   R
Sbjct: 39  DGCVGMAANMIGVNKAIIAVNM----GFMNVAMF-NPKIVKRNGKYET-EEGCLSLDGVR 92

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             V R   I V Y D N + Q     G  A  +QHE DHLNGI+
Sbjct: 93  KCV-RYQEIKVEYEDINFKRQRQKYSGWTAQIIQHECDHLNGII 135


>gi|167757205|ref|ZP_02429332.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402]
 gi|237735710|ref|ZP_04566191.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167703380|gb|EDS17959.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402]
 gi|229381455|gb|EEO31546.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 137

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 28  IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87
           + +L+D +  + ++T  +G+AA  IG+   +++++        N +V +NP+II      
Sbjct: 27  VQDLLDTI--IAHATGCVGMAANMIGINKNIIIVN-----DDGNYLVMLNPEIIKTMGRL 79

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
              +EGCLS    +   KR   I V Y D + + +I       A  +QHE+DH NGIL
Sbjct: 80  YETEEGCLSHIGVKK-TKRYEKIKVAYYDVDFKKKIKTFSNYTAQIIQHEIDHCNGIL 136


>gi|317488626|ref|ZP_07947169.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325831636|ref|ZP_08164853.1| peptide deformylase [Eggerthella sp. HGA1]
 gi|316912278|gb|EFV33844.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325486507|gb|EGC88956.1| peptide deformylase [Eggerthella sp. HGA1]
          Length = 136

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IG + R++  D  + A+    +  +NP+I++ +  +   +EGCLS+   R   
Sbjct: 42  VGMAANMIGEVKRIIAFD-NEGAY----LAMLNPEIVSRAGAYET-EEGCLSLAGTR-PA 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y D   + ++    G  A  +QHE+DH NG+L
Sbjct: 95  TRYRTIKVSYQDLAMKPRVKTFTGFTAQIIQHEIDHCNGVL 135


>gi|119025798|ref|YP_909643.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703]
 gi|118765382|dbj|BAF39561.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703]
          Length = 106

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 76  INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           +NP ++  +       EGCLS+P      +R+ +  VR +D + +  ++   G++   LQ
Sbjct: 16  LNP-VLEEASGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGKPVVLEGHGIMGRMLQ 74

Query: 136 HELDHLNGILFIDHLSRLKRDMITKKM 162
           HE DHL+G +++D L + +R    + M
Sbjct: 75  HETDHLDGHVYLDRLEKEERREAMRYM 101


>gi|167767071|ref|ZP_02439124.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1]
 gi|167711046|gb|EDS21625.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1]
 gi|291559591|emb|CBL38391.1| N-formylmethionyl-tRNA deformylase [butyrate-producing bacterium
           SSC/2]
          Length = 136

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 11/103 (10%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRA 102
           +G+AA  IGV   ++V+ +        P  F  INPKI   S  F   +EGCLS+   R 
Sbjct: 42  VGMAANMIGVKKNIIVVAV-------GPFQFAMINPKITKKSGVFET-EEGCLSLDGVRP 93

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             KR   I V Y+D + + Q     G  A  +QHE+DH  GI+
Sbjct: 94  -CKRYKEIEVDYLDQDFKEQHGKYSGWTAQIIQHEIDHCKGIV 135


>gi|257063393|ref|YP_003143065.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
 gi|256791046|gb|ACV21716.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
          Length = 140

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 14/144 (9%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVV-IDLQ 64
           ++  D IL   S+P ++  ++   +++++++ + S +   GLAA QIG   R+VV +D++
Sbjct: 5   IVTDDEIL---SKPCDEGTAEDAAIVEDLIDTLKSLETAAGLAANQIGETKRIVVYLDMK 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NAQ--H 121
           D     NP    NP +I  + + S   E CLS       VKR A I V Y +  N Q   
Sbjct: 62  D-----NPHAMFNP-VIKMALNPSTVAEECLSHEGQYVTVKRFAKINVAYQELINGQLVD 115

Query: 122 QIIYADGLLATCLQHELDHLNGIL 145
           +    +G  A  +QH +DH NG L
Sbjct: 116 RKRKFEGWTAQVIQHLVDHCNGKL 139


>gi|320546940|ref|ZP_08041241.1| peptide deformylase [Streptococcus equinus ATCC 9812]
 gi|320448342|gb|EFW89084.1| peptide deformylase [Streptococcus equinus ATCC 9812]
          Length = 136

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R +++++         ++  NP +   S  F   +E CLS+   R+  
Sbjct: 42  VGMAANMIGVKKRAIIVNMG-----LGDLIMFNPVMTNKSLPFDT-EESCLSLVGSRS-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   I V +MD N   Q +   GL A   QHELDHL GI+
Sbjct: 95  RRYQKIDVTFMDKNWNKQSLTLTGLPAQICQHELDHLEGII 135


>gi|324017857|gb|EGB87076.1| conserved domain protein [Escherichia coli MS 117-3]
          Length = 48

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 35/44 (79%)

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 2   ADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 45


>gi|325679773|ref|ZP_08159347.1| peptide deformylase [Ruminococcus albus 8]
 gi|324108588|gb|EGC02830.1| peptide deformylase [Ruminococcus albus 8]
          Length = 136

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 11/103 (10%)

Query: 45  IGLAAVQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           +G+AA  IG   R+++    + D       +V INP I+  +  +   +EGCLS+   R 
Sbjct: 42  VGMAANMIGYSKRIIIFTAGIMD-------IVMINPVIVKKARPYET-EEGCLSLTGVRK 93

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             KR   ITV Y+D + + +     G +A  +QHE DHL+GI+
Sbjct: 94  -TKRWEMITVEYLDTSFKKKRGDFTGFVAQIIQHECDHLDGII 135


>gi|293375957|ref|ZP_06622217.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325841958|ref|ZP_08167535.1| peptide deformylase [Turicibacter sp. HGF1]
 gi|292645394|gb|EFF63444.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325489791|gb|EGC92146.1| peptide deformylase [Turicibacter sp. HGF1]
          Length = 136

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IG+  R++V  + +      PM  INP I+     + V +E CLS+  +R + 
Sbjct: 42  VGMAANMIGIKKRIIVFAIGEIIV---PM--INPVIVKKEKSY-VTEESCLSLVGFR-ET 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y+D     Q     G +A  +QHE+DH NGI+
Sbjct: 95  TRYETIEVEYLDKQFNKQKGTFTGFVAQIIQHEIDHCNGII 135


>gi|238925751|ref|YP_002939268.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|238877427|gb|ACR77134.1| peptide deformylase [Eubacterium rectale ATCC 33656]
          Length = 136

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           MVKK   I  DP+   +++  E    D   ++ ++L+ + +     +G+AA  IGV   +
Sbjct: 1   MVKK---IMRDPLF--LAQKSEDATEDDKQVVTDLLDTLKANLDHCVGMAANMIGVKKNI 55

Query: 59  VVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +V+          P  F  INP I   S  F   +EGCLS+   R    R   I V Y+D
Sbjct: 56  IVV-------AAGPFQFAMINPVITGKSGAFQT-EEGCLSLDGVRP-CTRYKEIEVDYLD 106

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGIL 145
            N + +     G  A  +QHE+DH NG++
Sbjct: 107 QNFKKKHGKYTGWTAQIIQHEVDHCNGVV 135


>gi|150018336|ref|YP_001310590.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
 gi|6014951|sp|O08450|DEF_CLOB8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2208948|emb|CAB09662.1| formylmethionine deformylase [Clostridium beijerinckii]
 gi|149904801|gb|ABR35634.1| formylmethionine deformylase [Clostridium beijerinckii NCIMB 8052]
          Length = 136

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 22  EKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79
           E+   + M +ID++++ + +     +GLAA  IGV  R++V  + +      PM  INP 
Sbjct: 17  EEATKNDMVVIDDLIDTLRANLEHCVGLAANMIGVKKRILVFTVGNLIV---PM--INPV 71

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
           I+     +   +E CLS+  +R   KR   I V Y+D N   +    +G  A  +QHE+D
Sbjct: 72  ILKKEKPYET-EESCLSLIGFRK-TKRYETIEVTYLDRNFNKKKQVFNGFTAQIIQHEMD 129

Query: 140 HLNGIL 145
           H  GI+
Sbjct: 130 HFEGII 135


>gi|213691471|ref|YP_002322057.1| formylmethionine deformylase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522932|gb|ACJ51679.1| formylmethionine deformylase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457544|dbj|BAJ68165.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 139

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++V   +D   R    V  NP +IT SD     QEGCLS+   R  +
Sbjct: 42  VGMAANMIGVGKRIIVFVDEDLGGRIT--VMFNP-VITASDGAFDAQEGCLSLTGERRTL 98

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y D   + +     G  A  +QHE+DH NGI+
Sbjct: 99  -RYRRIEVNYEDRRFRARHATFAGWTAQIIQHEVDHCNGII 138


>gi|171778277|ref|ZP_02919483.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282977|gb|EDT48401.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 136

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           IG+AA  IGV  R++++++         +V  NP +   S  F   +E CLS+   R   
Sbjct: 42  IGMAANIIGVKKRVIIVNMG-----LADLVMFNPVMTNKSLPFDT-EESCLSLLGSRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   I V +MD N   Q +   GL A   QHELDHL GI+
Sbjct: 95  RRYQKIDVTFMDKNWNKQSLTLTGLAAQICQHELDHLEGII 135


>gi|306833720|ref|ZP_07466847.1| peptide deformylase [Streptococcus bovis ATCC 700338]
 gi|304424490|gb|EFM27629.1| peptide deformylase [Streptococcus bovis ATCC 700338]
          Length = 136

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R +++++         +V  NP ++  S  F   +E CLS+   R   
Sbjct: 42  VGMAANMIGVKKRAIIVNMG-----VADLVMFNPVLLNKSLPFDT-KESCLSLTGARP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   I V ++D N   Q +   GL A   QHELDHL G++
Sbjct: 95  RRYQKIEVAFLDKNWSQQTLTLTGLPAQICQHELDHLEGVI 135


>gi|251781139|ref|ZP_04824059.1| polypeptide deformylase family protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243085454|gb|EES51344.1| polypeptide deformylase family protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 136

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R++V         K  +  +NP I+     +   +E CLS+  +R   
Sbjct: 42  VGLAANMIGVKKRILVF-----VAGKVIIPMVNPVILKKEKIYET-EESCLSLTGFRK-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           KR   I V+Y+D N + +     G +A  +QHE+DH  GI+
Sbjct: 95  KRYEIIEVQYLDKNFKKKKQVFTGFVAQIIQHEMDHFEGII 135


>gi|171920852|ref|ZP_02932018.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|185178960|ref|ZP_02964717.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024017|ref|ZP_02996776.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518292|ref|ZP_03003815.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524344|ref|ZP_03004376.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867842|ref|ZP_03079842.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273805|ref|ZP_03206339.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225550531|ref|ZP_03771480.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551646|ref|ZP_03772592.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|171903056|gb|EDT49345.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209237|gb|EDU06280.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188019044|gb|EDU57084.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188998001|gb|EDU67098.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659819|gb|EDX53199.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660539|gb|EDX53796.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249560|gb|EDY74342.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225379461|gb|EEH01826.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225379685|gb|EEH02047.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 198

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 32/173 (18%)

Query: 5   PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAA 49
           P  IF  P P+LR V++ I+  +++ D +  +  M   ++V Y           GI +AA
Sbjct: 18  PQWIFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAA 77

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRS 107
            Q+G   R   I   D  + ++  + INP I   S   +     EGCLS+     D  RS
Sbjct: 78  NQVGWNKRATYIHFDD-GNEEHHYLLINPHITKRSSQRAYLNPGEGCLSV-----DHDRS 131

Query: 108 AFITVRYMDCNAQ------HQIIYAD--GLLATCLQHELDHLNGILFIDHLSR 152
            ++ +RY   + +       Q I  +  G++A C+QHE+ HL+  L+ D++++
Sbjct: 132 GYV-IRYEKVHVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNINQ 183


>gi|188588885|ref|YP_001921872.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499166|gb|ACD52302.1| polypeptide deformylase family protein [Clostridium botulinum E3
           str. Alaska E43]
          Length = 136

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IGV  R++V         K  +  +NP I+     +   +E CLS+  +R   
Sbjct: 42  VGLAANMIGVKKRILVF-----VAGKVIIPMVNPVILKKEKIYET-EESCLSLTGFR-KT 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           KR   I V+Y+D N + +     G +A  +QHE+DH  GI+
Sbjct: 95  KRYEIIEVQYLDKNFKKKKQVFTGFVAQIIQHEMDHFEGII 135


>gi|254520028|ref|ZP_05132084.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA]
 gi|226913777|gb|EEH98978.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA]
          Length = 136

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 31  LIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88
           +ID++++ + +     +G+AA  IGV  R++V  + D      PMV  NP I+   D   
Sbjct: 26  VIDDLVDTLRANLEQCVGMAANMIGVKKRILVFSIGDII---VPMV--NPVIVK-KDKVY 79

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             +E CLS+  +R  ++  A I V Y+D N +       G  A  +QHE+DH  GI+
Sbjct: 80  EAEESCLSLSGFRKTMRYEA-IEVEYLDRNFKKHKQTFTGFTAQVIQHEIDHFEGII 135


>gi|164687438|ref|ZP_02211466.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM
           16795]
 gi|164603212|gb|EDQ96677.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM
           16795]
          Length = 137

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%)

Query: 25  NSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF 83
            S + +L+D +     + DG +GLAA  IG   R++V  +   A    PM  INP I+  
Sbjct: 24  KSIVTDLVDTL---KANLDGCVGLAANMIGFKKRILVFTV--GAGMIVPM--INPVILKK 76

Query: 84  SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
              + + +E CLS+  +R    R   I V+++D N + +     G +A  +QHE+DH  G
Sbjct: 77  EKPY-LTEESCLSLEGFR-QTTRYETIEVKFLDANFKEKTQVFTGFVAQIIQHEMDHFEG 134

Query: 144 IL 145
           I+
Sbjct: 135 II 136


>gi|228477893|ref|ZP_04062507.1| polypeptide deformylase [Streptococcus salivarius SK126]
 gi|228250383|gb|EEK09623.1| polypeptide deformylase [Streptococcus salivarius SK126]
          Length = 136

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++++++         +V  NP +++ S  F   +E CLS+   R   
Sbjct: 42  LGMAANMIGVKKRVIIVNIGFVN-----LVMFNPILVSKSSPFQT-EESCLSLEGSRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           KR   I V Y+D     + +   G+ A  +QHELDHL GI+
Sbjct: 95  KRYESIEVAYLDEQWMPKQLSFSGMPAQIIQHELDHLEGII 135


>gi|225026504|ref|ZP_03715696.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353]
 gi|224956192|gb|EEG37401.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353]
          Length = 136

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L++ + P  K   D M ++ ++L+ + +  T  +G+AA  IGV  R++ +++   A+   
Sbjct: 12  LKKKAVPATK---DDMPVVQDLLDTLKANETGCVGMAANMIGVNKRIIAVNM-GFAN--- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  +NP I++  + +   +EGCLS+   R    R   I V Y D + + Q     G +A
Sbjct: 65  -IAMLNPVIVSKKEPYEA-EEGCLSLKGVRKTT-RYQEIEVEYEDIHFKKQHQKYKGWVA 121

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH  GI+ 
Sbjct: 122 QIIQHEVDHCEGIII 136


>gi|225870619|ref|YP_002746566.1| peptide deformylase [Streptococcus equi subsp. equi 4047]
 gi|225700023|emb|CAW94040.1| peptide deformylase [Streptococcus equi subsp. equi 4047]
          Length = 136

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+KK  ++     L++ ++P  K +  I   + + L   Y    +GLAA  IG   R+++
Sbjct: 1   MIKK--IVKDTFFLQQKAQPATKKDLWIGQDLQDTL-AYYRDSCLGLAANMIGENKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I +         +V  NP +I   + F   +E CLS+   R   KR   I V Y+D +  
Sbjct: 58  ISMGF-----VDLVMFNPVLIAKREAFEA-EESCLSLIGQR-KTKRYQEIKVDYLDAHWH 110

Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145
            + +   GL A   QHELDHL GIL
Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGIL 135


>gi|300854809|ref|YP_003779793.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300434924|gb|ADK14691.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 136

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 12  PILRRV---SRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDH 66
           PI++ V    +  E+     M + D++++ + +   + +GLA   IGV  R++V  + + 
Sbjct: 4   PIVKDVLFLGQKSEEATKKDMAVADDLMDTLRANLQNCVGLAGNMIGVRKRILVFTVGNL 63

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                PM  INP I+     +   +E CLS+   R   KR   I V Y+D N ++Q    
Sbjct: 64  IV---PM--INPVILKKEKPYET-EESCLSLIGVRK-TKRYEMIEVEYLDRNFKNQKQVF 116

Query: 127 DGLLATCLQHELDHLNGIL 145
            G  A  +QHE+DH  GI+
Sbjct: 117 TGFTAQIIQHEMDHFEGII 135


>gi|194466630|ref|ZP_03072617.1| formylmethionine deformylase [Lactobacillus reuteri 100-23]
 gi|194453666|gb|EDX42563.1| formylmethionine deformylase [Lactobacillus reuteri 100-23]
          Length = 136

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 12/135 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +L + + P  K +  + N + + L V +  + +G+AA  IGV    ++        R  P
Sbjct: 11  LLGKKAIPTTKADLPLANDLIDTLNV-HQAECVGMAANMIGVNKNAIIA-------RIGP 62

Query: 73  --MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +V  NP+II  S  +    EGCLS+   R   KR   ITV + + + Q Q +      
Sbjct: 63  FNVVMFNPQIIAKSHPYQTA-EGCLSLSGTRP-TKRYKQITVNFRNQSWQMQTLELTDFA 120

Query: 131 ATCLQHELDHLNGIL 145
           A  +QHE+DH NGI+
Sbjct: 121 AEIVQHEIDHCNGII 135


>gi|23466247|ref|NP_696850.1| peptide deformylase [Bifidobacterium longum NCC2705]
 gi|189440729|ref|YP_001955810.1| peptide deformylase [Bifidobacterium longum DJO10A]
 gi|322689813|ref|YP_004209547.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691751|ref|YP_004221321.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326994|gb|AAN25486.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189429164|gb|ACD99312.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|320456607|dbj|BAJ67229.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320461149|dbj|BAJ71769.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
          Length = 139

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           P E        +I+++++ + +     +G+AA  IGV  R++V   +D   R    V +N
Sbjct: 15  PSEAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRIT--VMLN 72

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
           P +IT SD     QEGCLS+   R  + R   I V Y +   + +     G  A  +QHE
Sbjct: 73  P-VITASDGAFDTQEGCLSLTGERRTL-RYRRIEVNYENRRFRARHATFAGWTAQIIQHE 130

Query: 138 LDHLNGIL 145
           +DH NGI+
Sbjct: 131 VDHCNGII 138


>gi|307720000|ref|YP_003891140.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
 gi|306978093|gb|ADN08128.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
          Length = 269

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 5/160 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K ++ +P          +   N ++ +LI ++ + + + +   L+A QIG  Y ++VI  
Sbjct: 3   KEIIKYPTTPSLEFGANVRHFNQELFDLIKDLKDTIEANNLDALSAFQIGSPYAVIVIKK 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D       +  INP+II      +   E     P   A  KR   I + Y D +A  Q 
Sbjct: 63  DDGEF----LELINPRIIKREGTITPV-ESTAYFPGLSAKTKRYEKIKLMYEDRDANQQF 117

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + A+G LA  +Q +LD++ G  F   L   +R ++  K+ 
Sbjct: 118 LEAEGDLAVTIQRKLDYVFGSNFRVRLDDNERKLLDSKLE 157


>gi|227546595|ref|ZP_03976644.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212912|gb|EEI80791.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291516343|emb|CBK69959.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           longum F8]
          Length = 134

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           P E        +I+++++ + +     +G+AA  IGV  R++V   +D   R    V +N
Sbjct: 10  PSEAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGR--ITVMLN 67

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
           P +IT SD     QEGCLS+   R  + R   I V Y +   + +     G  A  +QHE
Sbjct: 68  P-VITASDGAFDTQEGCLSLTGERRTL-RYRRIEVNYENRRFRARHATFAGWTAQIIQHE 125

Query: 138 LDHLNGIL 145
           +DH NGI+
Sbjct: 126 VDHCNGII 133


>gi|313678726|ref|YP_004056466.1| peptide deformylase [Mycoplasma bovis PG45]
 gi|312950135|gb|ADR24730.1| peptide deformylase [Mycoplasma bovis PG45]
          Length = 186

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 76/165 (46%), Gaps = 20/165 (12%)

Query: 6   LVIFPDPILRR--VSRPIEKINSDI-------MNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           LV  P  +LR+  V+ PI   N DI        ++ D+  E      G+G+AAVQ GVL 
Sbjct: 8   LVKLPKKVLRQKSVNVPIPLSNEDIELAEKMIYHIDDSQKEGSKFQAGVGVAAVQYGVLK 67

Query: 57  RLVVI----DLQDHAHRKNPMVFINPKIITFSDD-FSVYQ-EGCLS----IPDYRADVKR 106
           R+  I    D+ D        VF NP +I  S+   ++ Q EGCLS    I +    V R
Sbjct: 68  RVFYINVTEDMVDDKKYALRDVFFNPVVIAKSESKIALSQGEGCLSVGRNIKNQSGAVYR 127

Query: 107 SAFITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
              I +  Y     + +        A   QHELDHL+G LFID +
Sbjct: 128 HKRIVIEAYSYFEKKVKRYDLKDYPAIVAQHELDHLDGKLFIDRI 172


>gi|46190479|ref|ZP_00206479.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum
           DJO10A]
          Length = 128

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
           P E        +I+++++ + +     +G+AA  IGV  R++V   +D   R    V +N
Sbjct: 4   PSEAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGR--ITVMLN 61

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
           P +IT SD     QEGCLS+   R  + R   I V Y +   + +     G  A  +QHE
Sbjct: 62  P-VITASDGAFDTQEGCLSLTGERRTL-RYRRIEVNYENRRFRARHATFAGWTAQIIQHE 119

Query: 138 LDHLNGIL 145
           +DH NGI+
Sbjct: 120 VDHCNGII 127


>gi|260221951|emb|CBA31028.1| hypothetical protein Csp_C26500 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 48

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGLLA C+QHE+DHL G +F+++LS LKR+ I  KM K
Sbjct: 3   ADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIK 41


>gi|284048313|ref|YP_003398652.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731]
 gi|283952534|gb|ADB47337.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731]
          Length = 136

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV   ++V++L         MV  NP II     +    EGCLS+   R   
Sbjct: 42  VGMAANMIGVAKCIIVVNLG-----LMDMVMFNPTIIKQEGPYET-SEGCLSLSGER-KT 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V + D + + Q +   G  A  +QHE+DHL GIL
Sbjct: 95  TRYRKIQVEFQDMDFKKQTLEFTGFPAQIIQHEVDHLAGIL 135


>gi|42560770|ref|NP_975221.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492266|emb|CAE76863.1| Peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301320698|gb|ADK69341.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 200

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYR 101
            +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +  +  EGCLS+ +Y 
Sbjct: 74  AVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSVDNYH 133

Query: 102 AD-VKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R   I V+  D    Q+  +      A   QHE+DH  G+L+ DH+++
Sbjct: 134 LGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|258513851|ref|YP_003190073.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
 gi|257777556|gb|ACV61450.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
          Length = 74

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%)

Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ILR+ +R IEK  + I+  + NM E MY+ +  GLAA Q+ +L RLVVID+
Sbjct: 11 TNDILRKKTRTIEKFYNRILTSLKNMAETMYNANETGLAATQVAILRRLVVIDV 64


>gi|209554070|ref|YP_002284901.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|209541571|gb|ACI59800.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
          Length = 198

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 32/173 (18%)

Query: 5   PLVIF--PDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAA 49
           P  IF  P P+LR V++ I+  +++ D +  +  M   ++V Y           GI +AA
Sbjct: 18  PQWIFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAA 77

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRS 107
            Q+G   R   I   D  + +   + INP I   S   +     EGCLS+     D  RS
Sbjct: 78  NQVGWNKRATYIHFDD-GNEEYHYLLINPHITKRSSQRAYLNPGEGCLSV-----DHDRS 131

Query: 108 AFITVRYMDCNAQ------HQIIYAD--GLLATCLQHELDHLNGILFIDHLSR 152
            ++ +RY   + +       Q I  +  G++A C+QHE+ HL+  L+ D++++
Sbjct: 132 GYV-IRYEKVHVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNINQ 183


>gi|187934485|ref|YP_001886878.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
 gi|187722638|gb|ACD23859.1| polypeptide deformylase family protein [Clostridium botulinum B
           str. Eklund 17B]
          Length = 136

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLA   IGV  R++V         K  +  +NP I+     +   +E CLS+  +R   
Sbjct: 42  VGLAGNMIGVKKRILVF-----VAGKVIIPMVNPVILKKEKSYET-EESCLSLTGFRK-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           KR   I V+Y+D N + +     G +A  +QHE+DH  GI+
Sbjct: 95  KRYEIIEVQYLDKNFKKKKKVFTGFVAQIIQHEMDHFEGII 135


>gi|148544448|ref|YP_001271818.1| peptide deformylase [Lactobacillus reuteri DSM 20016]
 gi|184153812|ref|YP_001842153.1| peptide deformylase [Lactobacillus reuteri JCM 1112]
 gi|227363124|ref|ZP_03847259.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|325682770|ref|ZP_08162286.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
 gi|148531482|gb|ABQ83481.1| formylmethionine deformylase [Lactobacillus reuteri DSM 20016]
 gi|183225156|dbj|BAG25673.1| polypeptide deformylase [Lactobacillus reuteri JCM 1112]
 gi|227071842|gb|EEI10130.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|324977120|gb|EGC14071.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
          Length = 136

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           +L + + P  K +  +   + + L   +  + +G+AA  IGV    ++        R  P
Sbjct: 11  LLAKKATPTTKADLPLATDLSDTLNA-HQAECVGMAANMIGVNKNAIIA-------RIGP 62

Query: 73  --MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
             +V  NP+I+  S  +    EGCLS+   R   KR   ITV++ + + Q Q +      
Sbjct: 63  FNVVMFNPQIVAKSHPYQTT-EGCLSLSGTRP-TKRYKQITVKFRNQSWQVQTLELADFA 120

Query: 131 ATCLQHELDHLNGIL 145
           A  +QHE+DH NGI+
Sbjct: 121 AEIIQHEIDHCNGII 135


>gi|168204531|ref|ZP_02630536.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|170663898|gb|EDT16581.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
          Length = 136

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 29  MNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           + +ID++++ + +     +G+AA  IGV  R++V  + +      PMV  NP I+     
Sbjct: 24  IGIIDDLVDTLRANLESCVGMAANMIGVKKRILVFSIGNII---VPMV--NPVILKKEKS 78

Query: 87  FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +   +E CLS+  +R    R   I V Y+D N +       G  A  +QHE+DH +GI+
Sbjct: 79  YET-EESCLSLTGFRK-TTRYEIIEVEYLDRNFKKHKETFSGFTAQIIQHEVDHFDGII 135


>gi|110798606|ref|YP_695205.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|168217422|ref|ZP_02643047.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
 gi|110673253|gb|ABG82240.1| polypeptide deformylase [Clostridium perfringens ATCC 13124]
 gi|182380515|gb|EDT77994.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
          Length = 136

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 29  MNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           + +ID++++ + +     +G+AA  IGV  R++V  + +      PMV  NP I+     
Sbjct: 24  IGIIDDLVDTLRANLESCVGMAANMIGVKKRILVFSIGNII---VPMV--NPVILKKEKS 78

Query: 87  FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +   +E CLS+  +R    R   I V Y+D N +       G  A  +QHE+DH +GI+
Sbjct: 79  YET-EESCLSLTGFRK-TTRYEIIEVEYLDRNFKKHKETFSGFTAQIIQHEVDHFDGII 135


>gi|323141001|ref|ZP_08075911.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
 gi|322414538|gb|EFY05347.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
          Length = 136

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 11/145 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           ++KP +I  +  L + S+P   ++  +  +L+D +    ++   +GLAA  IGV   ++ 
Sbjct: 1   MEKP-IIKDEAFLAQKSQPATFMDIAVAQDLLDTL--AAHADRCVGLAANMIGVQKCVIA 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +  +NP+II  S  + + +EGCLS+   RA V R   ITV Y D   +
Sbjct: 58  VNI-----GPTNIAMLNPEIIKRSGKY-MTEEGCLSLEGERAAV-RYEKITVAYQDMQFK 110

Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145
                  G  A  +QHE+DH +GI+
Sbjct: 111 KCKQSFSGFTAQIIQHEIDHCHGII 135


>gi|328468001|gb|EGF39025.1| peptide deformylase [Lactobacillus helveticus MTCC 5463]
          Length = 137

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 42  TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           +  +GLAA  IG   R++   +        P + INPKI+  S  + + +EGCLS+   R
Sbjct: 40  SKAVGLAANMIGQSKRIIAFYIGSL-----PFMMINPKIVRKSGKY-MTEEGCLSLSGQR 93

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             V R   ITV Y + + +         +A  +QHE+DH +GIL
Sbjct: 94  QTV-RYKEITVTYQNLDFKEVTQDFSEFIAETIQHEVDHCDGIL 136


>gi|322517336|ref|ZP_08070211.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
 gi|322124033|gb|EFX95586.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
          Length = 136

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++++++         +V  NP +++ S  F   +E CLS+   R   
Sbjct: 42  VGMAANMIGVKKRVIIVNIG-----FVNLVMFNPVLVSKSSPFQT-EESCLSLEGSRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   I V Y+D     + +   G+ A  +QHELDHL GI+
Sbjct: 95  RRYESIEVAYLDEQWMLKQLNFSGMPAQIIQHELDHLEGII 135


>gi|297205664|ref|ZP_06923060.1| peptide deformylase [Lactobacillus jensenii JV-V16]
 gi|297150242|gb|EFH30539.1| peptide deformylase [Lactobacillus jensenii JV-V16]
          Length = 136

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 10/145 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+K+  +I  +  L+R S P  K +  I   + + L+       +G+AA  IG   R+++
Sbjct: 1   MIKE--IIKDEMFLKRKSLPATKADLSIGRDLRDTLQA-NKERCVGMAANMIGYSKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP I+   + + V  EGCLS+   R +  R   + V + D   +
Sbjct: 58  VNIGFF-----DVVMFNPVILERKNPYQV-SEGCLSLSGSR-NTLRFKEVKVAFFDEKWE 110

Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145
           +Q +   G  A   QHE+DHL GIL
Sbjct: 111 NQELTLTGFAAEICQHEMDHLEGIL 135


>gi|224065146|ref|XP_002190853.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 131

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 67  AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           AHR  P    V +NP +           EGC SI  + A V R   + V  +D       
Sbjct: 30  AHRIEPFPLRVLVNPALRILDSRLVTGPEGCASIHGFSAYVPRHWAVHVSGVDELGVPVS 89

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
             A G  A  +QHE+DHL+GIL+ID + 
Sbjct: 90  WEASGWAARIIQHEMDHLDGILYIDRME 117


>gi|18309742|ref|NP_561676.1| peptide deformylase [Clostridium perfringens str. 13]
 gi|168214353|ref|ZP_02639978.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|169344411|ref|ZP_02865380.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|18144420|dbj|BAB80466.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|169297331|gb|EDS79440.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|170714200|gb|EDT26382.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
          Length = 136

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 29  MNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           + +ID++++ + +     +G+AA  IGV  R++V  + +      PMV  NP I+     
Sbjct: 24  IGIIDDLVDTLRANLESCVGMAANMIGVKKRILVFSIGNII---VPMV--NPVILKKEKS 78

Query: 87  FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +   +E CLS+  +R    R   I V Y+D N +       G  A  +QHE+DH  GI+
Sbjct: 79  YET-EESCLSLTGFRKTT-RYEIIEVEYLDRNFKKHKETFSGFTAQIIQHEVDHFEGII 135


>gi|318060496|ref|ZP_07979219.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG]
          Length = 426

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 27  DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           +I  ++D +L       G+GL+A QIGV     ++     A     +  +NP++I  S +
Sbjct: 297 EIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPWGAPA---VTLLNPRVIAGSRE 353

Query: 87  FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
            +   E C           R   ITVR                LA  + HE+DHL G+L 
Sbjct: 354 TAEEYESCPGRLGPGTPTSRPNEITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLLH 413

Query: 147 IDHL 150
             HL
Sbjct: 414 PPHL 417


>gi|182624168|ref|ZP_02951955.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
 gi|177910784|gb|EDT73144.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
          Length = 136

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 29  MNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           + +ID++++ + +     +G+AA  IGV  R++V  + +      PMV  NP I+     
Sbjct: 24  IGIIDDLVDTLRANLESCVGMAANMIGVKKRILVFSIGNII---VPMV--NPVILKKEKS 78

Query: 87  FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +   +E CLS+  +R    R   I V Y+D N +       G  A  +QHE+DH  GI+
Sbjct: 79  YET-EESCLSLTRFRKTT-RYEIIEVEYLDRNFKKHKETFSGFTAQIIQHEVDHFEGII 135


>gi|149184142|ref|ZP_01862470.1| peptide deformylase [Bacillus sp. SG-1]
 gi|148848148|gb|EDL62470.1| peptide deformylase [Bacillus sp. SG-1]
          Length = 86

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 7/63 (11%)

Query: 92  EGCLSI----PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           EGCLS+    P Y   V R + +T++ MD +     I   GL +  +QHE+DHLNG++F 
Sbjct: 10  EGCLSVDRQVPGY---VPRYSRVTIKGMDIDGNPVKIRLKGLPSIVMQHEIDHLNGVMFY 66

Query: 148 DHL 150
           DH+
Sbjct: 67  DHI 69


>gi|256852171|ref|ZP_05557557.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661796|ref|ZP_05862707.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|282933528|ref|ZP_06338899.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|256615217|gb|EEU20408.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260547543|gb|EEX23522.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|281302342|gb|EFA94573.1| peptide deformylase [Lactobacillus jensenii 208-1]
          Length = 136

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+K+  +I  +  L+R S P  K +  I   + + L+       +G+AA  IG   R+++
Sbjct: 1   MIKE--IIKDEMFLKRKSLPATKADLSIGRDLRDTLQA-NKERCVGMAANMIGYSKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP I+   + + V  EGCLS+   R +  R   + V + D   +
Sbjct: 58  VNIGFF-----DVVMFNPVILERKNPYQV-SEGCLSLSGSR-NTLRFKEVKVAFFDEKWE 110

Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145
            Q +   G  A   QHE+DHL GIL
Sbjct: 111 KQELTLTGFAAEICQHEMDHLEGIL 135


>gi|169334954|ref|ZP_02862147.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257692|gb|EDS71658.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM
           17244]
          Length = 158

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 20/152 (13%)

Query: 4   KPLVIFPDPILRRVSRPIEK--------INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           K +++  +P L +VS+ +++        I  D+ + + N  +V  +  G  +AA QIG+ 
Sbjct: 3   KEILLLGNPNLYKVSKEVKEEEIQLLKNIEIDLHDTLMNYRKVHGA--GRAIAAPQIGIE 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRY 114
            R++ +++        P++ +NPK +TF D   +   + C+S P+    V+R     + Y
Sbjct: 61  KRILYMNID------KPILIVNPK-LTFPDSEKIQVMDDCMSFPNLTVKVERYKNCILNY 113

Query: 115 MDCN-AQHQIIYADGLLATCLQHELDHLNGIL 145
            D N +  ++I  D  L+  +QHE DHL+GIL
Sbjct: 114 KDRNFSDCKMILKDD-LSELIQHEYDHLDGIL 144


>gi|55820518|ref|YP_138960.1| peptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55822406|ref|YP_140847.1| peptide deformylase [Streptococcus thermophilus CNRZ1066]
 gi|55736503|gb|AAV60145.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55738391|gb|AAV62032.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066]
          Length = 136

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++++++         +V  NP +++ S  F   +E CLS+   R   
Sbjct: 42  VGMAANMIGVKKRVIIVNIGFVN-----LVMFNPVLVSKSSSFQT-EESCLSLEGSRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   I V Y+D     + +   G+ +  +QHELDHL G++
Sbjct: 95  RRYESIEVAYLDERWMPKQLSFSGMPSQIIQHELDHLEGVI 135


>gi|116627328|ref|YP_819947.1| peptide deformylase [Streptococcus thermophilus LMD-9]
 gi|116100605|gb|ABJ65751.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus
           LMD-9]
 gi|312277834|gb|ADQ62491.1| Peptide deformylase [Streptococcus thermophilus ND03]
          Length = 136

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++++++         +V  NP +++ S  F   +E CLS+   R   
Sbjct: 42  VGMAANMIGVKKRVIIVNIG-----FVNLVMFNPVLVSKSSSFQT-EESCLSLEGSRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   I V Y+D     + +   G+ +  +QHELDHL G++
Sbjct: 95  RRYESIEVAYLDERWMPKQLSFSGMPSQIIQHELDHLEGVI 135


>gi|153855447|ref|ZP_01996578.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814]
 gi|149752101|gb|EDM62032.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814]
          Length = 136

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 10/133 (7%)

Query: 14  LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           L + S P  + +  + ++L+D +    +    +G+AA  IGV   ++ +++       N 
Sbjct: 12  LNQRSEPATEADKQVAVDLLDTLK--AHEEGCVGMAANMIGVKKCIIAVNM----GFMNV 65

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            +F NPKI+  S  +   +EGCLS+   R    R   I V Y D N + Q     G  A 
Sbjct: 66  AMF-NPKIVKRSGKYET-EEGCLSLTGVR-KCTRYQEIEVEYQDMNFKKQRQKYTGWTAQ 122

Query: 133 CLQHELDHLNGIL 145
            +QHE+DH +GI+
Sbjct: 123 IIQHEVDHCHGIV 135


>gi|168209867|ref|ZP_02635492.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|170712027|gb|EDT24209.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
          Length = 136

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++V  + +      PMV  NP I+     +   +E CLS+  +R   
Sbjct: 42  VGMAANMIGVKKRILVFSIGNII---VPMV--NPVILKKEKSYET-EESCLSLTGFRK-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y+D N +       G  A  +QHE+DH +GI+
Sbjct: 95  TRYEIIEVEYLDRNFKKHKETFSGFTAQIIQHEVDHFDGII 135


>gi|300121292|emb|CBK21672.2| unnamed protein product [Blastocystis hominis]
          Length = 283

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 16/152 (10%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYS---TDGIGLAAVQIGVLYRLVVI------ 61
           + +LR+  R I+   SD M   D  +  M++    +  G++A Q+    R+ VI      
Sbjct: 18  EKVLRQKCRLIKDPTSDEMQ--DFAMNAMFTCIRNNAFGVSAPQLYRPIRMFVIRDYSTV 75

Query: 62  ----DLQDHAHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                L    H   P M + NP+I + S       E CLS P   A V R   I + Y+D
Sbjct: 76  PDPSQLSAEQHMSLPLMPYFNPRIESRSRKLMGEFESCLSDPWNVAFVARPHTIGISYID 135

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID 148
              ++Q     G  A   QHE DHL G    D
Sbjct: 136 GFGKYQEKEISGWEAQVFQHEYDHLEGKTMAD 167


>gi|83319871|ref|YP_424193.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283757|gb|ABC01689.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 200

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DY 100
            +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +  +  EGCLS+  D+
Sbjct: 74  AVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSVDNDH 133

Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R   I V+  D    Q+  +      A   QHE+DH  GIL+ DH+++
Sbjct: 134 LGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGILYYDHINK 186


>gi|225376046|ref|ZP_03753267.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM
           16841]
 gi|225212066|gb|EEG94420.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM
           16841]
          Length = 136

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRA 102
           +G+AA  IGV   ++V+          P  F  INP I      F   +EGCLS+   R 
Sbjct: 42  VGMAANMIGVSKNIIVV-------AAGPFQFAMINPVITKKMGTFQT-EEGCLSMDGVRP 93

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
              R   I V Y+D N + Q     G  A  +QHE+DH NGI+
Sbjct: 94  -CTRYKEIEVDYLDTNFKKQHGKYTGWTAQIIQHEIDHCNGIV 135


>gi|294790517|ref|ZP_06755675.1| peptide deformylase [Scardovia inopinata F0304]
 gi|294458414|gb|EFG26767.1| peptide deformylase [Scardovia inopinata F0304]
          Length = 230

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 68/169 (40%), Gaps = 27/169 (15%)

Query: 5   PLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR   V+   +     +  L   M   M +  G+GLA  QIG+   L V+ 
Sbjct: 30  PIVQMGEPVLRLKTVAYCGQLKPKTLEQLKKVMRRTMLNAPGVGLAGPQIGLGLSLAVV- 88

Query: 63  LQDH---------------AHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD 99
            +DH               A   +P         + INP      D  + + EGCLS   
Sbjct: 89  -EDHIRDLSDDEQAEADEAAASADPRGIADFPFHIIINPWYEPMDDASASFFEGCLSFDG 147

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           Y+A  KR   I   + D +A           A   QHE DHL G ++ID
Sbjct: 148 YQAVRKRWLNIKAHWFDEDAVEHEAELHQWPARIFQHETDHLKGEVYID 196


>gi|154484915|ref|ZP_02027363.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC
           27560]
 gi|149733868|gb|EDM49987.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC
           27560]
          Length = 136

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 22/151 (14%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           MVKK  ++    I  R ++P  K +    +D+M+ +    E+      +G+AA  IGV  
Sbjct: 1   MVKK--IVKGKQIFARKAQPATKADKQVVTDLMDTLRENREIC-----VGMAANMIGVNK 53

Query: 57  RLVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            ++V+          P  F  +NP I   S +++  +EGCLS+   R  + R   I V Y
Sbjct: 54  SIIVVAA-------GPFQFAMVNPVITKKSGEYTT-EEGCLSLDGVRNCI-RYKEIEVDY 104

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           ++ N + +     G  A  +QHE+DH NG++
Sbjct: 105 LNENFEPKHGKFSGYTAQIIQHEVDHCNGVV 135


>gi|317057111|ref|YP_004105578.1| formylmethionine deformylase [Ruminococcus albus 7]
 gi|315449380|gb|ADU22944.1| formylmethionine deformylase [Ruminococcus albus 7]
          Length = 136

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 12/134 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--DLQDHAHRKN 71
           L++ S   +K + DI+  + + L+  +    +G+AA  IG   R+++    + D      
Sbjct: 12  LKKKSIKADKNDVDIITDLRDTLKANHDR-CVGMAANMIGFNKRIIIFTAGIMD------ 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V INP I+  +  +   +EGCLS+   R   KR   ITV Y D +   +     G +A
Sbjct: 65  -IVMINPVIVKKAQPYET-EEGCLSLTGVRK-TKRWEKITVEYQDTSFNKKRGDFTGFVA 121

Query: 132 TCLQHELDHLNGIL 145
             +QHE DHL GI+
Sbjct: 122 QIIQHECDHLEGII 135


>gi|302672051|ref|YP_003832011.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316]
 gi|302396524|gb|ADL35429.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316]
          Length = 136

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 20/150 (13%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYR 57
           MVK+   I  DP  L++ S P  + +  +   I ++L+ + +     +G+AA  IGV  R
Sbjct: 1   MVKQ---IVKDPFFLQQKSEPATEADKQV---IQDLLDTLRANQDRCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ++V+ +        P  F  +NP+I   S ++   +E CLS+   R    R   I V Y+
Sbjct: 55  IIVVAM-------GPFHFAMVNPEITKKSGEYQT-EESCLSLEGVRP-CTRYKEIEVDYL 105

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           D + + Q        A  +QHE+DH  GIL
Sbjct: 106 DQDFKPQHGKYKDFTAQIIQHEIDHFEGIL 135


>gi|313885254|ref|ZP_07819006.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619945|gb|EFR31382.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 136

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 12/134 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L + ++P  K +  ++  + + L+  +    +G+AA  IG+   ++++ +        P+
Sbjct: 12  LSQKAKPATKEDQAVIQDLKDTLKA-HRHHCVGMAANMIGINKAIIIVAM-------GPL 63

Query: 74  --VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V +NP+I + +  +   QEGCLS    +   +R   I V+Y+D +   +     G LA
Sbjct: 64  DLVMVNPEITSQAKPYQT-QEGCLSHTGQKP-TQRYQEIQVQYLDEHFHPKNRRFQGPLA 121

Query: 132 TCLQHELDHLNGIL 145
             +QHE+DHL GIL
Sbjct: 122 QVIQHEMDHLAGIL 135


>gi|290977842|ref|XP_002671646.1| predicted protein [Naegleria gruberi]
 gi|284085216|gb|EFC38902.1| predicted protein [Naegleria gruberi]
          Length = 297

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 41/83 (49%)

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           ++I+PKI+  S +     EGCLS  +    + RS  I V Y++     Q    DG  A  
Sbjct: 192 LYIDPKIVDKSVEMEREVEGCLSFKNEYLFLMRSKEIEVEYINMFGVKQRKTLDGFSARV 251

Query: 134 LQHELDHLNGILFIDHLSRLKRD 156
            QHE DHL GI   D +   K+D
Sbjct: 252 FQHEFDHLEGINMFDRVVDKKKD 274


>gi|312864304|ref|ZP_07724538.1| peptide deformylase [Streptococcus vestibularis F0396]
 gi|311100305|gb|EFQ58514.1| peptide deformylase [Streptococcus vestibularis F0396]
          Length = 136

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++++++         +V  NP +++ S  F   +E CLS+   R   
Sbjct: 42  VGMAANMIGVKKRVIIVNIG-----FVNLVMFNPVLVSKSSLFQT-EESCLSLEGSRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +R   I V Y+D     + +   G+ A  +QHELDHL GI+
Sbjct: 95  RRYESIEVAYLDEQWMLKQLNFSGMPAQIIQHELDHLEGII 135


>gi|331703218|ref|YP_004399905.1| peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801773|emb|CBW53926.1| Peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 200

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DY 100
            +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +  +  EGCLS+  D+
Sbjct: 74  AVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSVDNDH 133

Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R   I V+  D    Q+  +      A   QHE+DH  G+L+ DH+++
Sbjct: 134 LGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|333026448|ref|ZP_08454512.1| putative formylmethionine deformylase [Streptomyces sp. Tu6071]
 gi|332746300|gb|EGJ76741.1| putative formylmethionine deformylase [Streptomyces sp. Tu6071]
          Length = 434

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 27  DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86
           +I  ++D +L       G+GL+A QIGV     ++     A     +  +NP +I  S +
Sbjct: 295 EIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPWGAPA---VTLLNPCVIAGSRE 351

Query: 87  FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
            +   E C      R    R   ITVR                LA  + HE+DHL G+L 
Sbjct: 352 TAEEYESCPGRSGPRTPTSRPNEITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLL- 410

Query: 147 IDHLSRL 153
             H  RL
Sbjct: 411 --HPPRL 415


>gi|319939828|ref|ZP_08014184.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
 gi|319811041|gb|EFW07356.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
          Length = 136

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++++      +   P++  NP +   S  +   +E CLS+   R   
Sbjct: 42  VGMAANMIGVQKRIIIL-----MYDVIPVIMFNPILKRKSSPYRA-EESCLSLAGSRL-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   ITV Y+D + + Q +      A   QHELDHL GIL
Sbjct: 95  TRYKEITVEYLDQHWRKQTLTLKDFPAQICQHELDHLEGIL 135


>gi|238923534|ref|YP_002937050.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|238875209|gb|ACR74916.1| peptide deformylase [Eubacterium rectale ATCC 33656]
          Length = 136

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 18/147 (12%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +VK PL +    +    + P +++ +D+++ +   L+       +G+AA  IGV   ++V
Sbjct: 5   IVKDPLFLAQKSV--DATEPDKQVVTDLLDTLRANLD-----HCVGMAANMIGVKKNIIV 57

Query: 61  IDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +          P  F  INP I   S  +   +EGCLS+   R    R   I V Y+D +
Sbjct: 58  V-------AAGPFQFAMINPVITKKSGAYQT-EEGCLSLEGVRP-CTRYQEIEVDYLDQS 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGIL 145
            + Q     G  A  +QHE+DH NGI+
Sbjct: 109 FKKQHGKYSGWTAQIIQHEIDHCNGIV 135


>gi|227543949|ref|ZP_03973998.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
 gi|300909699|ref|ZP_07127160.1| peptide deformylase [Lactobacillus reuteri SD2112]
 gi|227186065|gb|EEI66136.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
 gi|300893564|gb|EFK86923.1| peptide deformylase [Lactobacillus reuteri SD2112]
          Length = 136

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           +  + +G+AA  IGV    ++  +       N ++F NP+I+  S  +    EGCLS+  
Sbjct: 37  HQAECVGMAANMIGVNKNAIIARIGPF----NVLMF-NPQIVAKSHPYQTT-EGCLSLSG 90

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   KR   ITV++ + + Q Q +      A  +QHE+DH NGI+
Sbjct: 91  TRP-TKRYKQITVKFRNQSWQVQTLELTDFAAEIIQHEIDHCNGII 135


>gi|256384123|gb|ACU78693.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384955|gb|ACU79524.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455689|gb|ADH21924.1| peptide deformylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 200

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DY 100
            +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +  +  EGCLS+  D+
Sbjct: 74  AVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSVDNDH 133

Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R   I V+  D    Q+  +      A   QHE+DH  G+L+ DH+++
Sbjct: 134 LGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|161506686|ref|YP_001576636.1| peptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|260101789|ref|ZP_05752026.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
 gi|160347675|gb|ABX26349.1| Polypeptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|260084400|gb|EEW68520.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
          Length = 137

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 42  TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           +   GLAA  IG   R++   +        P + INPKI+  S  + + +EGCLS+   R
Sbjct: 40  SKAAGLAANMIGQSKRIIAFYIGSL-----PFMMINPKIVRKSGKY-MTEEGCLSLSGQR 93

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
             V R   ITV Y + + +         +A  +QHE+DH +GIL
Sbjct: 94  QTV-RYKEITVTYQNLDFKEVTQDFSEFIAETIQHEVDHCDGIL 136


>gi|224010171|ref|XP_002294043.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970060|gb|EED88398.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 549

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 17/115 (14%)

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADVKRSA 108
           I  + +L +   Q     +  +  +NP+I+  S   +  V+ E CL +P  +RA + R A
Sbjct: 266 IFAINKLSLTKQQPQREAEGGVFLVNPRIVHRSTESEMLVWTEECLVLPPVFRATLVRDA 325

Query: 109 FITVRYMD-------------CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +T+ Y               C    QI    G LA C QHE+DH  G+L +DH+
Sbjct: 326 EVTIEYESLETLDESSPGDSLCGVTKQITL-KGELARCAQHEMDHDRGVLIVDHV 379


>gi|307721460|ref|YP_003892600.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
 gi|306979553|gb|ADN09588.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
          Length = 272

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + ++ +P P+    +  +   +  +  LI+++ + +   +   L+A QIG  Y +V++  
Sbjct: 3   RTIIQYPTPLSVEYATDVRIFDETLFALIEDLKDTINENNLDALSAYQIGSYYNVVIV-- 60

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +D +     M  INP++I+ S    +  E     PD  A+++R   I+V Y D N   + 
Sbjct: 61  KDDSGEFIEM--INPRLISHSGTI-ITDEQTAYYPDKSAEIQRYDKISVVYQDRNGNDKS 117

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151
           + A G  +  +Q ++D+  G  F+  +S
Sbjct: 118 MQASGEFSIRIQRKIDYTFGATFVQKMS 145


>gi|110004337|emb|CAK98675.1| putative peptide deformylase 2 protein [Spiroplasma citri]
          Length = 192

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 78/175 (44%), Gaps = 29/175 (16%)

Query: 4   KPLVIFPD-PILRR----VSRPIEKINSDIMN-LIDNMLEVMYSTD-----------GIG 46
           K  ++F D P +R+    VS P+   N  +M  LID    V YS D            +G
Sbjct: 8   KDWLVFDDTPSIRQSSIDVSLPLAPENELVMKKLIDF---VRYSQDPQKNSGHTIRPAVG 64

Query: 47  LAAVQIGV---LYRLVVIDLQDHAHRKN--PMVFINPKIITFSDDFSVYQEG--CLSI-P 98
           LAA QIG    +Y + + +  D    K       INPKII  S   +  +EG  CLS+  
Sbjct: 65  LAAPQIGFNIKMYYIRIEETNDETGFKKIIEHAMINPKIIGKSAQIACIEEGEGCLSVNG 124

Query: 99  DYRADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           D    V RS  I V   D   Q Q+ I A    A   QHE  HL G L+ D +++
Sbjct: 125 DKEGFVPRSFRIIVEGYDYLKQQQVTITARSYEAIVFQHEEAHLEGKLYYDLINK 179


>gi|313665134|ref|YP_004047005.1| peptide deformylase [Mycoplasma leachii PG50]
 gi|312949522|gb|ADR24118.1| peptide deformylase [Mycoplasma leachii PG50]
          Length = 200

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DY 100
            +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +  +  EGCLS+  D+
Sbjct: 74  AVGLAAPQIGVNKDIFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSVDNDH 133

Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R   I V+  D    Q+  +      A   QHE+DH  G+L+ DH+++
Sbjct: 134 LGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|9957264|gb|AAG09295.1|AF177768_1 ORF260 [Trypanosoma brucei]
 gi|261335512|emb|CBH18506.1| polypeptide deformylase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 260

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110
           +   ++ ++ H +  N  V++NP +  + D  S+       E C+S     A V R   I
Sbjct: 93  WDAAIVLIKGHPNEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQSI 152

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           T   +D     +    DG+ A CL HELDHL+G   +D
Sbjct: 153 TCSGLDEYGNEKTEVLDGMRARCLMHELDHLSGKTILD 190


>gi|197301435|ref|ZP_03166515.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC
           29176]
 gi|197299473|gb|EDY33993.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC
           29176]
          Length = 136

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 16/143 (11%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYRLVVIDLQ 64
           +I    I  R ++P  + + +I   + ++L+ + +   I  G+AA  IG+   ++ + + 
Sbjct: 5   IIKGKKIFGRKAKPATEADQEI---VTDLLDTLRANREICVGMAANMIGINKSIIAVAV- 60

Query: 65  DHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                  P  F  INP I   S ++   +EGCLS+   R    R   I V Y+D N Q  
Sbjct: 61  ------GPFQFAMINPVITKMSGEYKT-EEGCLSLEGTRL-CTRYEEIEVDYLDSNFQFC 112

Query: 123 IIYADGLLATCLQHELDHLNGIL 145
                G  A  +QHE+DH  GI+
Sbjct: 113 HGKYSGWTAQIIQHEIDHCKGIV 135


>gi|195978210|ref|YP_002123454.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974915|gb|ACG62441.1| peptide deformylase Def [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 136

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+KK  ++     L++ ++P  K +  I   + + L   Y    +GLAA  IG   R+++
Sbjct: 1   MIKK--IVKDTFFLQQKAQPATKKDLWIGQDLQDTL-AYYRDSCLGLAANMIGENKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + +         +V  NP +      F   +E CLS+   R   KR   I V Y+D +  
Sbjct: 58  VSMG-----FVDLVMFNPVLTAKRGAFEA-EESCLSLTGQRR-TKRYQEIKVDYLDTHWH 110

Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145
            + +   GL A   QHELDHL GIL
Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGIL 135


>gi|261338163|ref|ZP_05966047.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
 gi|270276799|gb|EFA22653.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
          Length = 152

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYS-TDG-IGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + +RP +  N + + +  ++ + + + +DG +G+AA  IG    ++V    D      
Sbjct: 22  LAKPARPADPSNPEDLQIAQDLKDTLRAHSDGCVGMAANMIGEPVAIIV--FVDDEMGGG 79

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
               +NP+I T +  +    EGCLS+   RA V R+ +I V Y +   + +    +G  A
Sbjct: 80  ITTMLNPRITT-AQQYYETAEGCLSLDGERA-VTRAQYIEVDYDNTKGKPRHARFEGFTA 137

Query: 132 TCLQHELDHLNG 143
             +QHE+DH  G
Sbjct: 138 QIIQHEVDHCLG 149


>gi|291524049|emb|CBK89636.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale DSM 17629]
 gi|291527891|emb|CBK93477.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale M104/1]
          Length = 136

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRA 102
           +G+AA  IGV   ++V+          P  F  INP I   S  F   +EGCLS+   R 
Sbjct: 42  VGMAANMIGVKKNIIVV-------AAGPFQFAMINPVITGKSGAFQT-EEGCLSLDGVRP 93

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
              R   I V Y+D N + +     G  A  +QHE+DH NG++
Sbjct: 94  -CTRYKEIEVDYLDQNFKKKHGKYTGWTAQIIQHEVDHCNGVV 135


>gi|171741144|ref|ZP_02916951.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC
           27678]
 gi|283455486|ref|YP_003360050.1| peptide deformylase [Bifidobacterium dentium Bd1]
 gi|306823442|ref|ZP_07456817.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|309802744|ref|ZP_07696848.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
 gi|171276758|gb|EDT44419.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC
           27678]
 gi|283102120|gb|ADB09226.1| fms Peptide deformylase [Bifidobacterium dentium Bd1]
 gi|304553149|gb|EFM41061.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|308220808|gb|EFO77116.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
          Length = 141

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 12  PILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           P L + SR  +  + D  +   + + L+  +    +G+AA  IGV  R++    +D   R
Sbjct: 10  PFLEQPSRDAQNTDEDFAVAQDLKDTLDA-HRNSCVGMAANMIGVSKRIIAFVDEDFGGR 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               +  NP+I      F    EGCLS+   R  V R   I V Y D   + +     G 
Sbjct: 69  --IFIMFNPEITARDGAFDT-SEGCLSLQGERHTV-RHQRIEVTYFDRKFRERHAAFTGF 124

Query: 130 LATCLQHELDHLNGIL 145
            A  +QHE+DH  GI+
Sbjct: 125 TAQIIQHEVDHCAGII 140


>gi|162448037|ref|YP_001621169.1| peptide deformylase [Acholeplasma laidlawii PG-8A]
 gi|161986144|gb|ABX81793.1| peptide deformylase [Acholeplasma laidlawii PG-8A]
          Length = 192

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 8/114 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIPDYRA 102
           +GLAA QI  L R+  + ++D        V INP+I+  T  + +    EGCLS+    +
Sbjct: 56  VGLAAPQINELKRMFAMHVEDMDGTLYSYVMINPEIVGHTHEETYLPGGEGCLSVDRATS 115

Query: 103 DV-KRSAFITVR-----YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +  R   I VR     +    A+   +  +G  A   QHE DHL+GI+F   L
Sbjct: 116 GLTPRYYGIMVRGYHLDFESLTAKPIELTLEGYPAIVFQHEYDHLDGIMFTSKL 169


>gi|74025884|ref|XP_829508.1| polypeptide deformylase [Trypanosoma brucei TREU927]
 gi|70834894|gb|EAN80396.1| polypeptide deformylase, putative [Trypanosoma brucei]
          Length = 260

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110
           +   ++ ++ H +  N  V++NP +  + D  S+       E C+S     A V R   I
Sbjct: 93  WDAAIVLIKGHPNEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQSI 152

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           T   +D     +    DG+ A CL HELDHL+G   +D
Sbjct: 153 TCSGLDEYGNEKTEVLDGMRARCLMHELDHLSGRTILD 190


>gi|253579091|ref|ZP_04856362.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850034|gb|EES77993.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA]
          Length = 136

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 8/130 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L + S+P  K +  I   + + L+       +G+AA  IGV   ++++++         +
Sbjct: 12  LGQPSKPATKADIQIGKDLQDTLQANREW-CVGMAANMIGVRKNIIIVNM-----GFIDV 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP I++  D +   +EGCLS+   R    R   I V Y D N + Q     G  A  
Sbjct: 66  VMFNPVIVSKHDMYET-EEGCLSLDGVRK-TTRYQEIEVEYYDFNWKKQRQKLSGWTAQI 123

Query: 134 LQHELDHLNG 143
            QHE+DHL+G
Sbjct: 124 CQHEIDHLSG 133


>gi|153811559|ref|ZP_01964227.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174]
 gi|149832300|gb|EDM87385.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174]
          Length = 136

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV   ++++++         +V  NP I++  D +   +EGCLS+   R   
Sbjct: 42  VGMAANMIGVKKNIIIVNMGFI-----DVVMFNPVIVSKHDMYET-EEGCLSLDGVRK-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
            R   I V Y D N + Q     G  A   QHE+DHL+G
Sbjct: 95  TRYQEIEVEYYDFNWKKQRQKLSGWTAQICQHEIDHLSG 133


>gi|68068927|ref|XP_676374.1| formylmethionine deformylase [Plasmodium berghei strain ANKA]
 gi|56496040|emb|CAH95054.1| formylmethionine deformylase, putative [Plasmodium berghei]
          Length = 122

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 38/57 (66%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +VI+P+PILR+ S  +   + ++ NLI  M + MY + GIGL+A Q+ +  R++V +
Sbjct: 62  IVIYPNPILRQKSEEVIYFDDNLKNLIRRMFKTMYESKGIGLSAPQVNINKRIIVWN 118


>gi|323465635|gb|ADX69322.1| Polypeptide deformylase [Lactobacillus helveticus H10]
          Length = 137

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 9/117 (7%)

Query: 29  MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88
           ++L D +L     +   GLAA  IG   R++   +        P + INPKI+  S  + 
Sbjct: 29  LDLCDTLL--ANRSKAAGLAANMIGQSKRIIAFYIGSL-----PFMMINPKIVRKSGKY- 80

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           + +EGCLS+   R  V R   ITV Y + + +          A  +QHE+DH +GIL
Sbjct: 81  MTEEGCLSLSGQRQTV-RYKEITVTYQNLDFKEVTQDFSEFTAETIQHEVDHCDGIL 136


>gi|154486846|ref|ZP_02028253.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis
           L2-32]
 gi|154084709|gb|EDN83754.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis
           L2-32]
          Length = 141

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHAHRK 70
           P L + S   E    D+    D    +    +G +G+AA  IGV  R++    +D   R 
Sbjct: 10  PFLSQPSAAAENTEEDLAVAQDLKDTLDAHRNGCVGMAANMIGVPKRIIAFVDEDFGGR- 68

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              V  NP I      F    EGCLS+   R  V R   I V YMD   + +     G  
Sbjct: 69  -IFVMFNPHITAEDGAFDT-AEGCLSLQGERRTV-RYQRIEVDYMDRKFRERHAAFTGFT 125

Query: 131 ATCLQHELDHLNGIL 145
           A  +QHE+DH +G++
Sbjct: 126 AQIIQHEIDHCDGVI 140


>gi|207108487|ref|ZP_03242649.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 77

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 39/55 (70%)

Query: 9  FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
          +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L
Sbjct: 9  YPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINL 63


>gi|260589802|ref|ZP_05855715.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|331083229|ref|ZP_08332345.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539843|gb|EEX20412.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|330404618|gb|EGG84158.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 136

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV   +++I++         ++  NP I+     +   +EGCLS+   R  V
Sbjct: 42  VGMAANMIGVKKNIIIINMG-----FVDVLMFNPVIVKKDTPYET-EEGCLSLEGVRPAV 95

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y D N + Q     G  A   QHE+DHL+GI+
Sbjct: 96  -RFQNIEVEYYDKNWKKQRQKLTGWTAQICQHEIDHLDGII 135


>gi|238855159|ref|ZP_04645481.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|260665536|ref|ZP_05866382.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|282932572|ref|ZP_06337994.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|313473142|ref|ZP_07813626.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|238832240|gb|EEQ24555.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|239528614|gb|EEQ67615.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|260560657|gb|EEX26635.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|281303320|gb|EFA95500.1| peptide deformylase [Lactobacillus jensenii 208-1]
          Length = 136

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IG   R++++++         +V  N  I+   D + V  EGCLS+   R + 
Sbjct: 42  VGMAANMIGYSKRVIIVNIGFL-----NVVMFNSVILERKDPYQV-SEGCLSLSGSR-NT 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   + V ++D   ++Q +   G  A   QHE+DHL GIL
Sbjct: 95  LRFKEVKVAFLDEKWENQELTLTGFAAEICQHEMDHLEGIL 135


>gi|225868458|ref|YP_002744406.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus]
 gi|225701734|emb|CAW99099.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus]
          Length = 136

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+KK  ++     L++ ++P  K +  I   + + L   Y    +GLAA  IG   R+++
Sbjct: 1   MIKK--IVKDTFFLQQKAQPATKKDLWIGQDLQDTL-AYYRDSCLGLAANMIGENKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + +         +V  NP +    + F   +E CLS+   R    R   I V Y+D +  
Sbjct: 58  VSMG-----FVDLVMFNPVLTAKREAFEA-EESCLSLTGQRR-TTRYQEIKVDYLDTHWH 110

Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145
            + +   GL A   QHELDHL GIL
Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGIL 135


>gi|153880447|ref|ZP_02004994.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS]
 gi|152063089|gb|EDN65006.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS]
          Length = 47

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/29 (68%), Positives = 26/29 (89%)

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +G+LA C+QHE+DHLNG LF+D+LS LKR
Sbjct: 4   EGVLAVCIQHEIDHLNGKLFVDYLSSLKR 32


>gi|297201621|ref|ZP_06919018.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
 gi|197711008|gb|EDY55042.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
          Length = 146

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS-------DDFSVYQE 92
           +   G GLAA Q+GV  RL V D  D    ++    +NP++           DD     E
Sbjct: 16  WPKAGAGLAANQVGVGLRLFVYDCPDDDEVRHVGHLVNPELDQLDPAGRRLLDD----SE 71

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
           GCLS P     V R      R  D + +  +I   G  A C  HE D  N
Sbjct: 72  GCLSGPGAVMAVPRPDRAGGRGFDRDGEPLVIEGTGYFAGCPAHETDTAN 121


>gi|227878034|ref|ZP_03996024.1| peptide deformylase [Lactobacillus crispatus JV-V01]
 gi|227862352|gb|EEJ69881.1| peptide deformylase [Lactobacillus crispatus JV-V01]
          Length = 143

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P V +NP+II       +  EGCLS+   R +V+R   ITV Y +   +         +A
Sbjct: 71  PFVMLNPRIIQ-KKQMYLASEGCLSLEGER-NVQRYEEITVTYQNMELETVTQTFGDFIA 128

Query: 132 TCLQHELDHLNGIL 145
             +QHE+DH NGIL
Sbjct: 129 ETIQHEIDHCNGIL 142


>gi|212716409|ref|ZP_03324537.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660662|gb|EEB21237.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM
           16992]
          Length = 141

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++    +D   R    V  NP  IT  D      EGCLS+   R  V
Sbjct: 44  VGMAANMIGVSKRIIAFVDEDFGGR--IFVMFNP-TITAKDGAYDTSEGCLSLKGERRTV 100

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y D   + +     G  A  +QHE+DH  GI+
Sbjct: 101 -RFQRIEVSYADRKFRERHATFTGFTAQIIQHEIDHCEGII 140


>gi|209363680|ref|YP_001423542.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|212217854|ref|YP_002304641.1| peptide deformylase [Coxiella burnetii CbuK_Q154]
 gi|207081613|gb|ABS76532.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|212012116|gb|ACJ19496.1| peptide deformylase [Coxiella burnetii CbuK_Q154]
          Length = 213

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 46  GLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           G AA Q+G+  R++++     D         P + +NP     SD      EGCLS+P  
Sbjct: 52  GFAAPQVGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGK 111

Query: 101 RADVKRSAFITVR----YMDCNAQHQII--YADGLLATCLQHELDHLNGILFID 148
              V+R   + +     + D  A  +I   Y     +   QHE+DHL G +++D
Sbjct: 112 VGVVERYVHVELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVD 165


>gi|256849685|ref|ZP_05555117.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|262047729|ref|ZP_06020681.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
 gi|293380519|ref|ZP_06626582.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|312977032|ref|ZP_07788781.1| peptide deformylase [Lactobacillus crispatus CTV-05]
 gi|256713801|gb|EEU28790.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|260571934|gb|EEX28502.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
 gi|290922919|gb|EFD99858.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|310896360|gb|EFQ45425.1| peptide deformylase [Lactobacillus crispatus CTV-05]
          Length = 137

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P V +NP+II       +  EGCLS+   R +V+R   ITV Y +   +         +A
Sbjct: 65  PFVMLNPRIIQ-KKQMYLASEGCLSLEGER-NVQRYEEITVTYQNMELETVTQTFGDFIA 122

Query: 132 TCLQHELDHLNGIL 145
             +QHE+DH NGIL
Sbjct: 123 ETIQHEIDHCNGIL 136


>gi|223932640|ref|ZP_03624640.1| formylmethionine deformylase [Streptococcus suis 89/1591]
 gi|330832215|ref|YP_004401040.1| peptide deformylase [Streptococcus suis ST3]
 gi|223898750|gb|EEF65111.1| formylmethionine deformylase [Streptococcus suis 89/1591]
 gi|329306438|gb|AEB80854.1| peptide deformylase [Streptococcus suis ST3]
          Length = 136

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IG+  R++++++         +V  NP +I+ +  +   +EGCLS+   R   
Sbjct: 42  VGMAANMIGIKKRIIIVNM-----GFTNLVMYNPVLISKAKPYQT-EEGCLSLEGTRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V ++D + +   +      A  +QHELDHL GI+
Sbjct: 95  TRYQEIEVEFLDASWKKISLKLTDFQAQIVQHELDHLEGII 135


>gi|256843756|ref|ZP_05549243.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|295691921|ref|YP_003600531.1| peptide deformylase [Lactobacillus crispatus ST1]
 gi|256613661|gb|EEU18863.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|295030027|emb|CBL49506.1| Peptide deformylase [Lactobacillus crispatus ST1]
          Length = 137

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P V +NP+II       +  EGCLS+   R +V+R   ITV Y +   +         +A
Sbjct: 65  PFVMLNPRIIQ-KKQMYLASEGCLSLEGER-NVQRYEEITVTYQNMELETVTQTFGDFIA 122

Query: 132 TCLQHELDHLNGIL 145
             +QHE+DH NGIL
Sbjct: 123 ETIQHEIDHCNGIL 136


>gi|260881156|ref|ZP_05403747.2| peptide deformylase [Mitsuokella multacida DSM 20544]
 gi|260849662|gb|EEX69669.1| peptide deformylase [Mitsuokella multacida DSM 20544]
          Length = 139

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IG    ++ I +  HA+    +  +NP +I  S +     EGCLS+   R   
Sbjct: 44  VGLAANMIGERKCIIAIRV-GHAY----LAMLNPTVIRHSKEVYNVSEGCLSLDGERP-T 97

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R  +I V Y D   + Q        A  +QHE+DH  GIL
Sbjct: 98  TRYKWIEVEYRDLKFKKQKQVFRDFPAEIVQHEMDHCEGIL 138


>gi|225350925|ref|ZP_03741948.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158381|gb|EEG71623.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 141

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++    +D   R    V  NP  IT  D      EGCLS+   R  V
Sbjct: 44  VGMAANMIGVSKRIIAFVDEDFGDR--IFVMFNP-TITAKDGAYDASEGCLSLKGERRTV 100

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y D   + +     G  A  +QHE+DH  GI+
Sbjct: 101 -RFQRIEVSYADRKFRERHATFTGFTAQIIQHEIDHCEGII 140


>gi|161830302|ref|YP_001597698.1| peptide deformylase [Coxiella burnetii RSA 331]
 gi|161762169|gb|ABX77811.1| peptide deformylase [Coxiella burnetii RSA 331]
          Length = 209

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 46  GLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           G AA Q+G+  R++++     D         P + +NP     SD      EGCLS+P  
Sbjct: 48  GFAAPQVGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGK 107

Query: 101 RADVKRSAFITVR----YMDCNAQHQII--YADGLLATCLQHELDHLNGILFID 148
              V+R   + +     + D  A  +I   Y     +   QHE+DHL G +++D
Sbjct: 108 VGVVERYVHVELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVD 161


>gi|169350971|ref|ZP_02867909.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552]
 gi|169292033|gb|EDS74166.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552]
          Length = 136

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IG   +++VI+  D       +V INP I   +  +    EGCL        +
Sbjct: 42  VGMAANMIGYNKQIIVIENNDEY-----LVMINPSITKTTGKYET-NEGCLCHETLMPAL 95

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   ITV Y+D N + +        A  +QHE+DH NGIL
Sbjct: 96  -RYHKITVEYLDLNFKKKTRTFKDYSAQIIQHEIDHCNGIL 135


>gi|153206215|ref|ZP_01945478.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177']
 gi|165919286|ref|ZP_02219372.1| peptide deformylase [Coxiella burnetii RSA 334]
 gi|120577345|gb|EAX33969.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177']
 gi|165917009|gb|EDR35613.1| peptide deformylase [Coxiella burnetii RSA 334]
          Length = 209

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 46  GLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           G AA Q+G+  R++++     D         P + +NP     SD      EGCLS+P  
Sbjct: 48  GFAAPQVGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGK 107

Query: 101 RADVKRSAFITVR----YMDCNAQHQII--YADGLLATCLQHELDHLNGILFID 148
              V+R   + +     + D  A  +I   Y     +   QHE+DHL G +++D
Sbjct: 108 VGVVERYVHVELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVD 161


>gi|289676938|ref|ZP_06497828.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 100

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII--YADGLLA 131
           + INP I           EGCLS+P  R  V R  + ++RY   + Q Q I   A G  A
Sbjct: 2   ILINPLITPLGSTLEEGWEGCLSVPGLRGMVDR--YQSIRYEGFDPQGQPIERVAHGFHA 59

Query: 132 TCLQHELDHLNGILFIDHLSRLKR 155
             +QHE DHL G L+   ++   +
Sbjct: 60  RVVQHECDHLIGRLYPSRITDFSK 83


>gi|253751244|ref|YP_003024385.1| peptide deformylase [Streptococcus suis SC84]
 gi|253753145|ref|YP_003026285.1| peptide deformylase [Streptococcus suis P1/7]
 gi|253754968|ref|YP_003028108.1| peptide deformylase [Streptococcus suis BM407]
 gi|251815533|emb|CAZ51115.1| peptide deformylase [Streptococcus suis SC84]
 gi|251817432|emb|CAZ55172.1| peptide deformylase [Streptococcus suis BM407]
 gi|251819390|emb|CAR44821.1| peptide deformylase [Streptococcus suis P1/7]
 gi|319757521|gb|ADV69463.1| peptide deformylase [Streptococcus suis JS14]
          Length = 136

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++++++         +V  NP +I+ +  +   +EGCLS+   R   
Sbjct: 42  VGMAANMIGVKKRIIIVNM-----GFTNLVMYNPVLISKAKPYQT-EEGCLSLEGTRP-T 94

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V + D + +   +      A  +QHELDHL GI+
Sbjct: 95  TRYQEIEVEFFDASWKKISLKLTDFQAQIVQHELDHLEGII 135


>gi|227891784|ref|ZP_04009589.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
 gi|227866443|gb|EEJ73864.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
          Length = 136

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 18/138 (13%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           IL + S P  K  +DI  + D +  + Y  D  +G+AA  IG    ++            
Sbjct: 11  ILSKKSTPTSK--NDIAIVQDLVDTLTYHRDHCVGMAANMIGKNKCIIACQF-------G 61

Query: 72  PMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--D 127
           P++   INP I   S  +S   EGCLS+   R +  R   I V Y+  N   Q ++A  +
Sbjct: 62  PLIVAMINPVITKKSQKYST-SEGCLSLTGER-ETTRFNKIEVSYL--NQSFQKVHATFE 117

Query: 128 GLLATCLQHELDHLNGIL 145
           G  A  +QHE+DH NGIL
Sbjct: 118 GFNAQIIQHEIDHCNGIL 135


>gi|292557811|gb|ADE30812.1| Formylmethionine deformylase [Streptococcus suis GZ1]
          Length = 163

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++++++         +V  NP +I+ +  +   +EGCLS+   R   
Sbjct: 69  VGMAANMIGVKKRIIIVNM-----GFTNLVMYNPVLISKAKPYQT-EEGCLSLEGTRPTT 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V + D + +   +      A  +QHELDHL GI+
Sbjct: 123 -RYQEIEVEFFDASWKKISLKLTDFQAQIVQHELDHLEGII 162


>gi|212211904|ref|YP_002302840.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
 gi|212010314|gb|ACJ17695.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
          Length = 213

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 46  GLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           G AA Q+G+  R++++     D         P + +NP     SD      EGCLS+P  
Sbjct: 52  GFAAPQVGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGK 111

Query: 101 RADVKRSAFITVR----YMDCNAQHQII--YADGLLATCLQHELDHLNGILFID 148
              V+R   + +     + D  A  +I   Y     +   QHE+DHL G +++D
Sbjct: 112 VGVVERYVHMELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVD 165


>gi|291547509|emb|CBL20617.1| N-formylmethionyl-tRNA deformylase [Ruminococcus sp. SR1/5]
          Length = 136

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV   ++++++         +V  NP I++  D +   +EGCLS+   R   
Sbjct: 42  VGMAANMIGVKKNIIIVNMGFIN-----VVMFNPVIVSKRDMYET-EEGCLSLDGVRKTT 95

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
            R   I V Y D   + Q     G  A   QHE+DHL+G
Sbjct: 96  -RYQEIEVEYYDFKWKKQRQKLSGWTAQICQHEIDHLSG 133


>gi|315221248|ref|ZP_07863171.1| peptide deformylase [Streptococcus anginosus F0211]
 gi|315189607|gb|EFU23299.1| peptide deformylase [Streptococcus anginosus F0211]
          Length = 140

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIPDYRA 102
           +G+AA  IGV  ++++       +   P++  NP         S Y  +E CLS+   R 
Sbjct: 46  VGMAANMIGVQKQVIIF-----MYGMVPVIMFNP---ILKRKLSPYRAEESCLSLAGSRL 97

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
              R   ITV Y+D + Q Q +      A   QHELDHL GIL
Sbjct: 98  TT-RYKEITVDYLDQHWQKQTLTLKDFPAQICQHELDHLEGIL 139


>gi|259048010|ref|ZP_05738411.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
 gi|259035349|gb|EEW36604.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
          Length = 137

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 13/105 (12%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           +G+AA  IGV   ++++ +        PM  V +NP+I      +   +EGCLS    + 
Sbjct: 43  VGMAANMIGVKKNIIIVAI-------GPMDLVMLNPRITKKQGPYET-EEGCLSHTGTKK 94

Query: 103 DVKRSAFITVRYMDCNAQ-HQIIYADGLLATCLQHELDHLNGILF 146
              R   I V Y D + + H   + D   A  +QHE+DHL GIL 
Sbjct: 95  -TTRYQTIEVAYTDPSGKKHTGTFTD-FTAQVIQHEIDHLEGILI 137


>gi|260584847|ref|ZP_05852592.1| peptide deformylase [Granulicatella elegans ATCC 700633]
 gi|260157504|gb|EEW92575.1| peptide deformylase [Granulicatella elegans ATCC 700633]
          Length = 137

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +GLAA  IG    ++++     A     +V +NP I   S  +   +EGCLS    ++  
Sbjct: 43  VGLAANMIGSHKAIIIV-----AAGPFDIVMVNPVITKKSQPYQT-EEGCLSHTGMKS-T 95

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I VRY D   +          A  +QHE+DHL GIL
Sbjct: 96  TRYQKIEVRYQDATGKTHTGTFTEFTAQVIQHEIDHLQGIL 136


>gi|301301079|ref|ZP_07207239.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851349|gb|EFK79073.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 136

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 18/138 (13%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           IL + S P  K  +DI  + D +  + Y  D  +G+AA  IG    ++            
Sbjct: 11  ILSKKSTPASK--NDIAIVQDLVDTLNYHRDHCVGMAANMIGKNKCIIACQF-------G 61

Query: 72  PMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--D 127
           P++   INP I   S  +S   EGCLS+   R +  R   I V Y+  N   Q ++A  +
Sbjct: 62  PLIVAMINPVITKKSQKYST-SEGCLSLTGER-ETTRFNKIKVSYL--NQSFQKVHATFE 117

Query: 128 GLLATCLQHELDHLNGIL 145
           G  A  +QHE+DH NGIL
Sbjct: 118 GFNAQIIQHEIDHCNGIL 135


>gi|291523053|emb|CBK81346.1| N-formylmethionyl-tRNA deformylase [Coprococcus catus GD/7]
          Length = 136

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           +  + +G+AA  IG+   ++++++         +V  NP ++  S  +   +EGCLS+  
Sbjct: 37  HRAECVGMAANMIGIKKNVIIVNMG-----IVDLVMFNPVLLKKSGPYET-EEGCLSLTG 90

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R    R   I V Y D +   +     G  A   QHE+DHLNGI+
Sbjct: 91  VR-KTTRYREIEVEYRDMSWTVRRQKLSGWTAQICQHEMDHLNGII 135


>gi|157873892|ref|XP_001685446.1| polypeptide deformylase-like protein [Leishmania major strain
           Friedlin]
 gi|68128518|emb|CAJ08650.1| putative polypeptide deformylase-like protein [Leishmania major
           strain Friedlin]
          Length = 271

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 74  VFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           V++NP +  + D  +V       E C+S     A V R   IT    D +  H++   DG
Sbjct: 122 VWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRITCSGYDEHGNHKVQVLDG 181

Query: 129 LLATCLQHELDHLNG 143
           + A CL HELDHL G
Sbjct: 182 MRARCLMHELDHLMG 196


>gi|315931998|gb|EFV10951.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 327]
          Length = 74

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
          MV+K ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R+++
Sbjct: 1  MVRK-IITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLL 59

Query: 61 IDLQDH 66
          +++ D 
Sbjct: 60 VNIFDE 65


>gi|322494221|emb|CBZ29518.1| putative polypeptide deformylase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 271

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110
           +   VI ++ +   K   V++NP +  + D  +V       E C+S     A V R   I
Sbjct: 104 WDAAVILIKGNPDEKEYEVWVNPLVPGYDDRDAVAPMYGMWENCISCGTATAWVVRPQRI 163

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           T    D +  H++   DG+ A CL HELDHL G
Sbjct: 164 TCSGYDEHGNHKVQVLDGMRARCLMHELDHLMG 196


>gi|169838490|ref|ZP_02871678.1| hypothetical protein cdivTM_15541 [candidate division TM7
           single-cell isolate TM7a]
          Length = 118

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           S+F   + +  + +   I A+G LA  LQHE+DH NGI+FIDH+ + K+D   K
Sbjct: 32  SSFYENKIIRTDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 84


>gi|322501785|emb|CBZ36867.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 271

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 74  VFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           V++NP +  + D  +V       E C+S     A V R   +T    D +  H++   DG
Sbjct: 122 VWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRVTCSGYDEHGNHKVQVLDG 181

Query: 129 LLATCLQHELDHLNG 143
           + A CL HELDHL G
Sbjct: 182 MRARCLMHELDHLMG 196


>gi|146096471|ref|XP_001467816.1| polypeptide deformylase-like protein [Leishmania infantum JPCM5]
 gi|134072182|emb|CAM70883.1| putative polypeptide deformylase-like protein [Leishmania infantum
           JPCM5]
          Length = 271

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 74  VFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           V++NP +  + D  +V       E C+S     A V R   +T    D +  H++   DG
Sbjct: 122 VWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRVTCSGYDEHGNHKVQVLDG 181

Query: 129 LLATCLQHELDHLNG 143
           + A CL HELDHL G
Sbjct: 182 MRARCLMHELDHLMG 196


>gi|213027380|ref|ZP_03341827.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 44

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +LA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 1   MLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 40


>gi|29655164|ref|NP_820856.1| peptide deformylase [Coxiella burnetii RSA 493]
 gi|39931092|sp|Q83AK6|DEF2_COXBU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|29542436|gb|AAO91370.1| peptide deformylase [Coxiella burnetii RSA 493]
          Length = 209

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 46  GLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           G A  Q+G+  R++++     D         P + +NP     SD      EGCLS+P  
Sbjct: 48  GFAVPQVGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGK 107

Query: 101 RADVKRSAFITVR----YMDCNAQHQII--YADGLLATCLQHELDHLNGILFID 148
              V+R   + +     + D  A  +I   Y     +   QHE+DHL G +++D
Sbjct: 108 VGVVERYVHVELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVD 161


>gi|152990073|ref|YP_001355795.1| hypothetical protein NIS_0324 [Nitratiruptor sp. SB155-2]
 gi|151421934|dbj|BAF69438.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 266

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           ++ +PD  L ++S  I       +N +++ + + +   +   LAA+QIG   R++V+  +
Sbjct: 4   ILTYPDHTLLQISGLIRDFKDPKINEIVEEIKKTIEENNLQALAAIQIGEPLRIIVLKKK 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D  +     V INP I      +    E   S+P+    V+R   I V Y D     +  
Sbjct: 64  DGTYE----VMINPTIYGKEGQYFASTESDESLPNIEVTVQRYPVIKVMYEDLQGNQKFY 119

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
            A    A  LQ ++D + G    D LS
Sbjct: 120 TAKDDEAVLLQRKIDMVFGGYLFDKLS 146


>gi|291519179|emb|CBK74400.1| N-formylmethionyl-tRNA deformylase [Butyrivibrio fibrisolvens 16/4]
          Length = 136

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 14/135 (10%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           L++ S P  + ++ +  ++D M  +  + D  +G+AA  IGV  +++V+          P
Sbjct: 12  LQQKSEPATEADAQV--IVDLMDTLKANIDRCVGMAANMIGVKKQIIVV-------AAGP 62

Query: 73  MVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            +F  +NP I   S  +   +E CLS+   R  V R   I V Y+D N Q +     G  
Sbjct: 63  FIFPMVNPVITKKSGKYET-EESCLSLDGVRPCV-RYDEIEVDYLDQNFQPKHGKYSGFT 120

Query: 131 ATCLQHELDHLNGIL 145
           A  +QHE+ H +G L
Sbjct: 121 AQIIQHEIQHFSGEL 135


>gi|157825208|ref|YP_001492928.1| polypeptide deformylase [Rickettsia akari str. Hartford]
 gi|157799166|gb|ABV74420.1| Polypeptide deformylase [Rickettsia akari str. Hartford]
          Length = 100

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 38/81 (46%)

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           ++INP       D     EG  S+ +    V R   I     D N        +G LA  
Sbjct: 5   IWINPSYKQVDIDKHEDYEGFFSVENATGPVARFKKIHCHAYDINGHQIQGITEGFLARV 64

Query: 134 LQHELDHLNGILFIDHLSRLK 154
           +QHE+DHLNG +F+D+++  K
Sbjct: 65  IQHEIDHLNGKVFLDYVAPEK 85


>gi|160895157|ref|ZP_02075930.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50]
 gi|156863191|gb|EDO56622.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50]
          Length = 144

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 29  MNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKNP--MVFINPKIITFS 84
           MN+++++ + + +     +G+ A  IG    ++++          P  M+ INP I +  
Sbjct: 32  MNVVNDLRDTLAANRERCVGMEANMIGYKKNMIIVSA-------GPVDMIMINPVICSKI 84

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
             +   +EGCLS+   R    R   I V + D     + +  +G +A  +QHE+DH NGI
Sbjct: 85  GRYET-EEGCLSLEGKRKTT-RYKKIEVEFQDAGFVKRKMAFEGFVAQIIQHEVDHCNGI 142

Query: 145 L 145
           +
Sbjct: 143 V 143


>gi|154343115|ref|XP_001567503.1| polypeptide deformylase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064835|emb|CAM42941.1| putative polypeptide deformylase-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 271

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 74  VFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           V++NP +  + D  +V       E C+S     A V R   IT R  + + + ++   DG
Sbjct: 122 VWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRITCRGYNEHGREKVQVLDG 181

Query: 129 LLATCLQHELDHLNG 143
           + A CL HELDHL G
Sbjct: 182 MRARCLMHELDHLMG 196


>gi|145531163|ref|XP_001451350.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419001|emb|CAK83953.1| unnamed protein product [Paramecium tetraurelia]
          Length = 219

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--------DLQDHAHR 69
           ++PI+ ++  +  +I  +       + + L+  QIG  Y++ V+           ++   
Sbjct: 35  TQPIQMMSQRMKQIIQCLKMTAAQENAVSLSCPQIGYNYQIFVVLKHMKKNQWCYNNLSS 94

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--D 127
            + M  INP+ +  S    V  E C S P     V+R   I  +++  N + ++I     
Sbjct: 95  SDYMTLINPQKLKQSRFTQVEWEECPSFPFLMGKVERPYKIEYQFI--NEKFKLIKQTLS 152

Query: 128 GLLATCLQHELDHLNGI 144
           G  A  +QHE+DHL GI
Sbjct: 153 GFEARVVQHEMDHLEGI 169


>gi|209732808|gb|ACI67273.1| Peptide deformylase, mitochondrial precursor [Salmo salar]
          Length = 112

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           +FIN ++         +QE C SI  + A V     + V  ++  A+       G     
Sbjct: 22  IFINHQLRVLDGRTVKFQEACESISGFSATVPHYLSVEVSGLNEKAEPVTWQVSGWPVRN 81

Query: 134 LQHELDHLNGILFIDHL 150
           LQHE+DHL+G+ +ID +
Sbjct: 82  LQHEMDHLDGVWYIDRM 98


>gi|295094704|emb|CBK83795.1| N-formylmethionyl-tRNA deformylase [Coprococcus sp. ART55/1]
          Length = 136

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 12/132 (9%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P+  +++ I   I +M + + +     +G+A   IG   R++++ +   A+   
Sbjct: 12  LSQKSSPMTTMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRIIIVSM-GFAN--- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V +NP +++ S  +   +EGCLS+   R  V R   I V + D +   + +  +G +A
Sbjct: 65  -VVMLNPVLLSKSGAYET-EEGCLSLDGTR-KVTRYRDIEVEFQDASFAKKRMKFNGYIA 121

Query: 132 TCLQHELDHLNG 143
             + HE+DHL G
Sbjct: 122 QIVLHEMDHLEG 133


>gi|163816477|ref|ZP_02207841.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759]
 gi|158448177|gb|EDP25172.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759]
          Length = 136

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 12/132 (9%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P+  +++ I   I +M + + +     +G+A   IG   R++++ +   A+   
Sbjct: 12  LSQKSSPMTPMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRIIIVSM-GFAN--- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V +NP +++ S  +   +EGCLS+   R  V R   I V + D +   + +  +G +A
Sbjct: 65  -VVMLNPVLLSKSGAYET-EEGCLSLDGTR-KVTRYRDIEVEFQDASFAKKRMKFNGYIA 121

Query: 132 TCLQHELDHLNG 143
             + HE+DHL G
Sbjct: 122 QIVLHEMDHLEG 133


>gi|295108734|emb|CBL22687.1| N-formylmethionyl-tRNA deformylase [Ruminococcus obeum A2-162]
          Length = 77

 Score = 44.3 bits (103), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +V  NP I++  D +   +EGCLS+   R    R   I V Y D N + +     G  A 
Sbjct: 6   VVMFNPVIVSKRDMYET-EEGCLSLDGVRK-TTRYQEIEVEYYDFNWKKKRQRLSGWTAQ 63

Query: 133 CLQHELDHLNG 143
             QHE+DHL+G
Sbjct: 64  ICQHEIDHLSG 74


>gi|309805350|ref|ZP_07699400.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c]
 gi|308165350|gb|EFO67583.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c]
          Length = 95

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 92  EGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           EGCLS+  D +  V R+  + ++Y   + + + I   G  A    HE+DHLNG LF D +
Sbjct: 20  EGCLSVDKDIQGYVPRAYKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRI 79

Query: 151 SR 152
            +
Sbjct: 80  DK 81


>gi|239621599|ref|ZP_04664630.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515474|gb|EEQ55341.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 141

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IGV  R++    +D   R    V  NP I T  D      EGCLS+   R  +
Sbjct: 44  VGMAANMIGVPKRIIAFVDEDLGGRIT--VMFNPHI-TAQDGAYDASEGCLSLNGERHTL 100

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V Y D   + +     G  A  +QHE+DH +G++
Sbjct: 101 -RYQRIEVTYEDRRFRERHATFTGFTAQIIQHEIDHCDGVI 140


>gi|118096630|ref|XP_001232975.1| PREDICTED: similar to Component of oligomeric golgi complex 8
           [Gallus gallus]
          Length = 677

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 67  AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           AHR  P    + ++P +           EG  SI  + A V R     V  +D N     
Sbjct: 576 AHRIEPFPLRLLVSPALRVRDGRRGTAPEGGASIRGFAAGVPRRGAGHVSGVDENGDPVS 635

Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150
             A G  A  +QHE+DHL+G+LFID +
Sbjct: 636 WEATGWAARIVQHEMDHLDGVLFIDRM 662


>gi|118386952|ref|XP_001026593.1| polypeptide deformylase family protein [Tetrahymena thermophila]
 gi|89308360|gb|EAS06348.1| polypeptide deformylase family protein [Tetrahymena thermophila
           SB210]
          Length = 318

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 12/145 (8%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK--------- 70
           P++     + + I N+      +  + LAA QIG+  R +V+   D+ +++         
Sbjct: 98  PVQGFTQTLKSEILNLKYHAEVSGRVNLAANQIGIPKRFIVLAKPDYLYKRVWVNDNLDI 157

Query: 71  -NPMVFINPKIITFSDDFSVY-QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            +    +NP+I+   D F  Y  E     P  R    R   I V+Y++   +   +  +G
Sbjct: 158 QHLHALVNPRILD-KDKFMEYDWEQTACFPTVRFRRLRYHHILVQYLNEQMEQVEVEMNG 216

Query: 129 LLATCLQHELDHLNGILFIDHLSRL 153
             +   Q  LDHLNGI+  D +  +
Sbjct: 217 WESRLFQQSLDHLNGIIPFDEVKNM 241


>gi|302765893|ref|XP_002966367.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii]
 gi|300165787|gb|EFJ32394.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii]
          Length = 340

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 37/129 (28%)

Query: 23  KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT 82
           +INS   N+   ML+V Y  DGIGL   Q+GV  RL              MVF NP+   
Sbjct: 61  RINSFDDNVKKLMLDVTYRRDGIGLLTPQLGVNARL--------------MVF-NPE--- 102

Query: 83  FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
                   + G      YR+++K          D N +    +     A   +HE DHL 
Sbjct: 103 -------GERGKGKRDRYRSELK--------SQDINGKKYGSWT----ARIFRHEYDHLE 143

Query: 143 GILFIDHLS 151
           G+L+ID ++
Sbjct: 144 GVLYIDQMT 152


>gi|229818453|ref|ZP_04448734.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM
           20098]
 gi|229784323|gb|EEP20437.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM
           20098]
          Length = 141

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +G+AA  IG   R++    ++   R   M   NP+I T  D      EGCLS+   R  +
Sbjct: 44  VGMAANMIGEHKRIIAFVDEELGGRITLM--FNPRI-TAQDGAYDTAEGCLSLNGERRTL 100

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
            R   I V YMD   + +     G  A  +QHE+DH +G++
Sbjct: 101 -RYQRIEVDYMDRRWRERHATFTGFTAQIIQHEIDHCDGVI 140


>gi|50365386|ref|YP_053811.1| polypeptide deformylase [Mesoplasma florum L1]
 gi|50363942|gb|AAT75927.1| polypeptide deformylase [Mesoplasma florum L1]
          Length = 200

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSI-PDY 100
            +GLAA QIGV   +  I      ++      IN + +  S   +  +EG  CLS+  D 
Sbjct: 75  AVGLAAPQIGVNKDMFYIRFNLPNNQIEEYAMINTEYLAKSSRMAALEEGEGCLSVDEDK 134

Query: 101 RADVKRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
              V RS  I+V+  D   +  + +      +   QHE+DH  G L+ DH++
Sbjct: 135 HGIVPRSWIISVKGFDWLKKEWVELKLKDYRSIVFQHEMDHNIGNLYYDHIN 186


>gi|317488618|ref|ZP_07947161.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325831659|ref|ZP_08164876.1| peptide deformylase [Eggerthella sp. HGA1]
 gi|316912270|gb|EFV33836.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325486530|gb|EGC88979.1| peptide deformylase [Eggerthella sp. HGA1]
          Length = 139

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 19/142 (13%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVV-IDLQDHAH 68
           + IL +V  P     +D   + D+++E + S DG   LAA QIG    ++  +D  D  H
Sbjct: 9   EAILSQVCTPA---TTDDAQVADDLVETLTSMDGAACLAANQIGATTCIIAYLDDDDQPH 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF--ITVRY---MDCNAQHQI 123
                V  NP+++     F    EGCLS+    AD K + F  I V Y   +D   + + 
Sbjct: 66  -----VMYNPRLLQALGAFKAV-EGCLSL---EADSKVTRFDRIKVGYSELVDGELKPRK 116

Query: 124 IYADGLLATCLQHELDHLNGIL 145
              +G  A  +QH +DH  G L
Sbjct: 117 KDFNGWTAQIIQHGIDHCKGKL 138


>gi|255018922|ref|ZP_05291048.1| peptide deformylase [Listeria monocytogenes FSL F2-515]
          Length = 65

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V RS  +T+   D N     +   G  A  +QHE+DHLNGI+F DH+++
Sbjct: 3   VVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINK 51


>gi|302803460|ref|XP_002983483.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii]
 gi|300148726|gb|EFJ15384.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii]
          Length = 157

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 17/102 (16%)

Query: 11  DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID----- 62
           DP+L   +R +   +++SD + N I  +++ M     +GLAA QIGV  +++V++     
Sbjct: 55  DPVLHEAAREVLHSEVSSDTVQNTIQGLIDAMREAPAVGLAAPQIGVPLQIIVLEDTAEY 114

Query: 63  ----LQDHA--HRKNP---MVFINPKIITFSDDFSVYQEGCL 95
                +D A   ++ P   +V INP +   +   + + EGCL
Sbjct: 115 ISYVSRDEALSQQRKPFELLVIINPILRPTTSATARFFEGCL 156


>gi|289677569|ref|ZP_06498459.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 47

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 9  FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL 47
          FPD  LR +++P+  ++  I  L+D+M E MY   GIGL
Sbjct: 9  FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGL 47


>gi|302766599|ref|XP_002966720.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii]
 gi|300166140|gb|EFJ32747.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii]
          Length = 277

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 37/143 (25%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++ DP LR  +  I   +  +  L   ML+V Y  DG+GL+A Q+GV  RL       
Sbjct: 144 IVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARL------- 193

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  MVF NP+           + G      YR+++K          D N +     
Sbjct: 194 -------MVF-NPE----------GERGKGKEDRYRSELK--------AQDINGKKFGTA 227

Query: 126 ADGLLATCLQHELDHLN-GILFI 147
             G  A   +HE DHL   ++F+
Sbjct: 228 FRGWTAGIFRHEYDHLEVAVVFV 250


>gi|257068452|ref|YP_003154707.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
 gi|256559270|gb|ACU85117.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
          Length = 240

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 17/131 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI-----------DLQDHAHRKN-PM-VFINPKII 81
           M   M +  G+GLAA Q+G+     VI           ++ D   R+  P+   ++P + 
Sbjct: 67  MTVTMRAAPGVGLAAPQVGLPLSFYVIEDRYADEPGEDEVGDLLERRPLPLRALLDPVLE 126

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD----GLLATCLQHE 137
                     EGCLS+  +++ V RS  + +R  +      +   +    G  A  LQHE
Sbjct: 127 PLGTQRVYAFEGCLSVDGWQSIVPRSRRVLLRATELLGDGSLREVEEEHVGWTARILQHE 186

Query: 138 LDHLNGILFID 148
            DHL G L  D
Sbjct: 187 TDHLAGTLCHD 197


>gi|239792061|dbj|BAH72415.1| ACYPI003516 [Acyrthosiphon pisum]
          Length = 119

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 11 DPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
          DP+LR  + P+  EKI + ++ NLI  M  +M  ++ IGLAA Q+G+ +++ VI     +
Sbjct: 32 DPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIHFPRPS 91

Query: 68 H 68
          H
Sbjct: 92 H 92


>gi|313239302|emb|CBY14250.1| unnamed protein product [Oikopleura dioica]
          Length = 1132

 Score = 42.0 bits (97), Expect = 0.032,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 32/173 (18%)

Query: 6   LVIFPDPILRRVS-------------RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQI 52
           L +  DP+LR+ +             +  E  N  IM  +  M   M++  G  + A Q+
Sbjct: 11  LALIGDPVLRQPAADFDVNVYNSVDMKTFENHNPAIMKSLAKM--EMFAQYGWVITAPQV 68

Query: 53  GVLYRLVVIDLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           G+  +++++ L               +    VF NP+I   +++ +   E  LSIP    
Sbjct: 69  GLPIKIMLVQLHLGLDDDGFTIKGTDKTKNYVFANPEIRPLTNEKAFSIESSLSIPALSG 128

Query: 103 DVKRSAFITVRYMDCNAQHQIIYA----DGLLATCLQHELDHLNGILFIDHLS 151
            ++R   I +   D  A+  +       D  +   +Q+ +D LNG++FID ++
Sbjct: 129 VLERHQLIELTAYDLAARRVVKMTLSPPDSFM---VQNAVDQLNGVMFIDKVT 178


>gi|299116828|emb|CBN74940.1| dubious peptide deformylase [Ectocarpus siliculosus]
          Length = 97

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
           +FS DF+   EG +S       V+R  ++ V  ++   +          A   QHE DHL
Sbjct: 8   SFSIDFT---EG-VSFWSPLLQVERRNWVKVEAVNAKGKKVKKKYTDWTARIFQHEYDHL 63

Query: 142 NGILFIDHLSRLKRDMITKKMSKLVQ 167
           +G ++IDHLS  +R+ +   + KLV 
Sbjct: 64  DGTVYIDHLSPPEREKVQPVLDKLVS 89


>gi|254456880|ref|ZP_05070308.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
 gi|207085672|gb|EDZ62956.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
          Length = 267

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K +  +P          +   N ++  LI ++ + +       LAA QIG    ++V+  
Sbjct: 3   KEITKYPTKPSLEFGANVRFFNDELFALIQDLKDTIEVNSLDALAAFQIGSPLSVIVVK- 61

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                    +  INP+++    + SV   E     P   A  KR   IT+ Y D +A  +
Sbjct: 62  ----KGGEFLELINPRVL--KREGSVEPVETTAYFPGMSAKTKRYEKITLMYEDRDATQK 115

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            + ADG LA  LQ ++D+  G  F   L + ++ +   K+ 
Sbjct: 116 FLEADGELAITLQRKVDYTFGSHFRFRLDKDEQKLFDSKLE 156


>gi|281202742|gb|EFA76944.1| hypothetical protein PPL_09696 [Polysphondylium pallidum PN500]
          Length = 614

 Score = 40.8 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           D + + + I ADG+++ CLQHE DHL G +FI+ L     D++
Sbjct: 57  DISGKDRSIEADGIISACLQHENDHLLGRVFIERLKNGVNDLV 99


>gi|167947582|ref|ZP_02534656.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 58

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +G  A  LQHE+DHL+GILF+D L   + D+  +K+
Sbjct: 12  EGYEARALQHEVDHLDGILFVDRLVSRRTDLFQRKV 47


>gi|257790523|ref|YP_003181129.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
 gi|257474420|gb|ACV54740.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
          Length = 139

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 19/142 (13%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVV-IDLQDHAH 68
           +  L +V  P     ++   + D+++E + S DG   LAA QIG    ++  +D  D  H
Sbjct: 9   EATLSQVCTPA---TAEDAQVADDLVETLTSMDGAACLAANQIGATTCIIAYLDDDDQPH 65

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF--ITVRY---MDCNAQHQI 123
                V  NP+++     F    EGCLS+    AD K + F  I V Y   +D   + + 
Sbjct: 66  -----VMYNPRLLQALGAFKAV-EGCLSL---EADSKVTRFDRIKVGYSELVDGELKPRK 116

Query: 124 IYADGLLATCLQHELDHLNGIL 145
              +G  A  +QH +DH  G L
Sbjct: 117 KDFNGWTAQIIQHGIDHCKGKL 138


>gi|149411900|ref|XP_001510213.1| PREDICTED: similar to bromodomain adjacent to zinc finger domain,
           1A [Ornithorhynchus anatinus]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           A   R   +   ++D N +  +  A G  A  +QHE+DHL G L+ID +
Sbjct: 137 AGRARRTDVPGHWLDENGEPVVWQASGWPARIIQHEMDHLQGSLYIDKM 185


>gi|183602062|ref|ZP_02963431.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682971|ref|YP_002469354.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190548|ref|YP_002967942.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195954|ref|YP_002969509.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218947|gb|EDT89589.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620621|gb|ACL28778.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248940|gb|ACS45880.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250508|gb|ACS47447.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793535|gb|ADG33070.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9]
          Length = 142

 Score = 40.4 bits (93), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79
           P + +++ I   +   L   +  + +G+AA  IG   R  VI   D        V  NP+
Sbjct: 21  PADPLDAAIAQDLKETL-AAHREECVGMAANMIGEPKR--VIAFVDEGLGSAITVMFNPQ 77

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
           I     ++    EGCLS+   R    R   I V Y     + +        A  +QHE+D
Sbjct: 78  ITAADGEYDAC-EGCLSLHGER-HTPRFRRIEVDYTTRKGRARHATFTDWTAQIIQHEID 135

Query: 140 HLNGIL 145
           H NG+L
Sbjct: 136 HCNGVL 141


>gi|289178283|gb|ADC85529.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 188

 Score = 40.4 bits (93), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 20  PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79
           P + +++ I   +   L   +  + +G+AA  IG   R  VI   D        V  NP+
Sbjct: 67  PADPLDAAIAQDLKETL-AAHREECVGMAANMIGEPKR--VIAFVDEGLGSAITVMFNPQ 123

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
           I     ++    EGCLS+   R    R   I V Y     + +        A  +QHE+D
Sbjct: 124 ITAADGEYDAC-EGCLSLHGER-HTPRFRRIEVDYTTRKGRARHATFTDWTAQIIQHEID 181

Query: 140 HLNGIL 145
           H NG+L
Sbjct: 182 HCNGVL 187


>gi|145509567|ref|XP_001440722.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407950|emb|CAK73325.1| unnamed protein product [Paramecium tetraurelia]
          Length = 237

 Score = 40.4 bits (93), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 1/123 (0%)

Query: 47  LAAVQIGVLYRLVVIDLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           LAA Q+G+   L ++  Q      +   V INPKI+  S++     E  +S P ++A V 
Sbjct: 48  LAANQVGLEQNLFIMLPQSSKMIPSEYKVIINPKILKISNEVIENTEESISFPQFKAKVN 107

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           R   I V Y D   +       GL +   Q  +D + GI  I  ++   +  +  +  K 
Sbjct: 108 RYKTIFVSYDDKKGKTVEEELKGLESIWYQQAIDQVMGIPCISWIASQGKVELKPEYQKQ 167

Query: 166 VQL 168
            +L
Sbjct: 168 AEL 170


>gi|302776574|ref|XP_002971443.1| hypothetical protein SELMODRAFT_412157 [Selaginella moellendorffii]
 gi|300160575|gb|EFJ27192.1| hypothetical protein SELMODRAFT_412157 [Selaginella moellendorffii]
          Length = 239

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 26/124 (20%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EG 93
           ML+V Y  DG+GL+  Q+G               +    VF+NP I+ F  +      EG
Sbjct: 1   MLDVTYRRDGVGLSTPQLG---------------KGKGYVFVNPMIVKFGKEREADTLEG 45

Query: 94  CLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA--DGL----LATCLQHELDHLNGILFI 147
           CL  P Y A   R   I++R      Q + I+    GL      T          G+L+I
Sbjct: 46  CL--PFYGAQADR--LISIRVESSRHQREEIWYRLQGLDCSNFPTWRWPWYLFAQGVLYI 101

Query: 148 DHLS 151
           D ++
Sbjct: 102 DQMT 105


>gi|146318043|ref|YP_001197755.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33]
 gi|145688849|gb|ABP89355.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33]
          Length = 70

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP II+ +  +   +EGCLS+   R    R   I V + D + +   +      A  +QH
Sbjct: 3   NPVIISKAKPYQT-EEGCLSLEGTRPTT-RYQEIEVEFFDASWKKISLKLTDFQAQIVQH 60

Query: 137 ELDHLNGIL 145
           ELDHL GI+
Sbjct: 61  ELDHLEGII 69


>gi|71413918|ref|XP_809080.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL
           Brener]
 gi|70873406|gb|EAN87229.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi]
          Length = 260

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110
           +   V+ ++ H   +   V+++P +  +    S+       E C+S     A V R   +
Sbjct: 93  WDATVVLIKSHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQSV 152

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           T    D     +    DG+ A CL HELDHL+G
Sbjct: 153 TCSGWDEYGNEKTELLDGMRARCLMHELDHLHG 185


>gi|71654685|ref|XP_815957.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL
           Brener]
 gi|70881052|gb|EAN94106.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi]
          Length = 260

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110
           +   V+ ++ H   +   V+++P +  +    S+       E C+S     A V R   +
Sbjct: 93  WDATVVLIKGHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQCV 152

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           T    D     +    DG+ A CL HELDHL+G
Sbjct: 153 TCSGWDEYGNEKTELLDGMRARCLMHELDHLHG 185


>gi|149378482|ref|ZP_01896166.1| peptide deformylase [Marinobacter algicola DG893]
 gi|149357233|gb|EDM45771.1| peptide deformylase [Marinobacter algicola DG893]
          Length = 43

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 9  FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG 44
          +PDP LR +++P++++  +   LID+M E MY   G
Sbjct: 8  YPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPG 43


>gi|169837912|ref|ZP_02871100.1| hypothetical protein cdivTM_12604 [candidate division TM7
           single-cell isolate TM7a]
          Length = 68

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           + A   QHE DH+ GILF D LS L + ++ KK+
Sbjct: 18  MWARAFQHEFDHIEGILFTDRLSILNKRLVAKKL 51


>gi|328955181|ref|YP_004372514.1| formylmethionine deformylase [Coriobacterium glomerans PW2]
 gi|328455505|gb|AEB06699.1| formylmethionine deformylase [Coriobacterium glomerans PW2]
          Length = 139

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 26/141 (18%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVVIDLQDHAHRKNPMVF 75
           +S+P +   ++   L  ++L+ + S +  G LAA QIG L  + V   +    R  P V 
Sbjct: 12  LSQPAKPATAEDAALAKDLLDTLASLEHAGCLAANQIGALKAICVYSDE----RNEPHVM 67

Query: 76  INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT--- 132
            NP+++ F    S  +E CL+        K       RY     Q   + ADG L T   
Sbjct: 68  FNPRLL-FGLGASKMREECLT--------KSEPVTVTRYAKVKIQFDEL-ADGALKTRKR 117

Query: 133 --------CLQHELDHLNGIL 145
                    +QH +DH  G L
Sbjct: 118 DFTGYTAQMIQHMIDHCRGRL 138


>gi|289676937|ref|ZP_06497827.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 79

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 14 LRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
          L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +LV+   +
Sbjct: 13 LLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFE 66


>gi|330952314|gb|EGH52574.1| peptide deformylase [Pseudomonas syringae Cit 7]
          Length = 45

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 9  FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI 45
          FPD  LR +++P+  ++  I  L+D+M E MY   GI
Sbjct: 9  FPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGI 45


>gi|169837919|ref|ZP_02871107.1| Peptide deformylase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 85

 Score = 38.5 bits (88), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 46  GLAAVQIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
            LAAVQ+  L R+V++  + D+    +    INP+II +  + +   EGCLS+      V
Sbjct: 17  ALAAVQVDKLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKV 76

Query: 105 KR 106
            R
Sbjct: 77  PR 78


>gi|302779762|ref|XP_002971656.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii]
 gi|300160788|gb|EFJ27405.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii]
          Length = 556

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG 53
            V++PDP LR  +R I +INS   N+   ML+V Y  DG+GL+  Q+G
Sbjct: 72  FVLYPDPKLR--ARNI-RINSFDDNVKKLMLDVTYRRDGVGLSTPQLG 116


>gi|169838808|ref|ZP_02871996.1| hypothetical protein cdivTM_17171 [candidate division TM7
           single-cell isolate TM7a]
          Length = 143

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 110 ITVRYMDCNAQHQ--------IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           + V  M CN  HQ         ++   +L   LQHE+DH NGI+FIDH+   K+D   K
Sbjct: 8   LRVATMLCNYHHQNGRLSHLDKVFLIRILVRVLQHEIDHTNGIVFIDHIKN-KKDAFYK 65


>gi|322821869|gb|EFZ28075.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi]
          Length = 260

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKRSAFI 110
           +   V+ ++ H   +   V+++P +  +    S+       E C+S     A V R   +
Sbjct: 93  WDATVVLIKSHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQSV 152

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           T    D     +     G+ A CL HELDHL+G
Sbjct: 153 TCSGWDEYGNEKTELLGGMRARCLMHELDHLHG 185


>gi|295106023|emb|CBL03566.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 139

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 14/135 (10%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVVIDLQDHAHRKNPMVF 75
           +S+P E   ++   +  ++L+ + S D    LAA QIGV   ++V     H   + P V 
Sbjct: 12  LSQPCETATAEDAVVAQDLLDTLASLDEAACLAANQIGVAKAVIVY----HDENEQPHVM 67

Query: 76  INPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRY---MDCNAQHQIIYADGLL 130
            NP           Y+  EGCL++ +  + V R   + V Y   +D     +     G  
Sbjct: 68  YNP---VLKQALGAYKTVEGCLTL-ESESKVTRYERVKVVYDELVDGALVSRKRDFTGWT 123

Query: 131 ATCLQHELDHLNGIL 145
           A  +QH +DH  G L
Sbjct: 124 AELIQHMIDHCKGKL 138


>gi|38141771|dbj|BAD00707.1| putative polypeptide deformylase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 152

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 25/129 (19%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVM-YSTD-----------GIGLAAVQIGVLYR 57
           +P LR V++ +E  ++ D + L + M++ + +S D           G+GLAA QI V  R
Sbjct: 24  NPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQIDVSKR 83

Query: 58  LVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPD-YRADVK 105
           ++ + + +      NP         V  NPKI++ S  D      EGCLS+       V 
Sbjct: 84  IIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRVVEGYVV 143

Query: 106 RSAFITVRY 114
           R A +TV Y
Sbjct: 144 RHARVTVEY 152


>gi|169840242|ref|ZP_02873430.1| Peptide deformylase [candidate division TM7 single-cell isolate
          TM7a]
          Length = 71

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 6  LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
          +V++  P LR   R  ++++ ++   +D M+ +M   +G+GLAA Q+ +  R  V++
Sbjct: 4  IVLYGHPTLRE-KRKSDEVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLE 59


>gi|326927579|ref|XP_003209969.1| PREDICTED: conserved oligomeric Golgi complex subunit 8-like,
           partial [Meleagris gallopavo]
          Length = 600

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 19/25 (76%)

Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150
           A G  A  +QHE+DHL+G+LFID +
Sbjct: 561 ATGWAARIVQHEMDHLDGVLFIDRM 585


>gi|167950136|ref|ZP_02537210.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 40

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 76  INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +NP+I  + D F + +EGCLS+PDY  +V R+  I +   D
Sbjct: 1   MNPEISKW-DGFELGREGCLSVPDYTGNVIRAERIKLTAQD 40


>gi|302765901|ref|XP_002966371.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii]
 gi|300165791|gb|EFJ32398.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii]
          Length = 374

 Score = 36.2 bits (82), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG 53
            V++PDP LR  +R I +INS   N+   ML+V Y  DG+GL+  ++G
Sbjct: 72  FVLYPDPKLR--ARNI-RINSFDDNVKKLMLDVTYRRDGVGLSTPRLG 116


>gi|302866922|ref|YP_003835559.1| family 2 glycosyl transferase8 protein [Micromonospora aurantiaca
           ATCC 27029]
 gi|315506640|ref|YP_004085527.1| glycosyl transferase family 28 [Micromonospora sp. L5]
 gi|302569781|gb|ADL45983.1| glycosyl transferase family 28 [Micromonospora aurantiaca ATCC
           27029]
 gi|315413259|gb|ADU11376.1| glycosyl transferase family 28 [Micromonospora sp. L5]
          Length = 407

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 22/100 (22%)

Query: 13  ILRRVSRPIEKINSDIM--------NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           +   V  P    NSD+         +     L  + S  G+G             V D+ 
Sbjct: 145 VFGEVPAPASADNSDLWAANLRHVNDTFAAPLNALRSAVGLG------------TVDDVS 192

Query: 65  DHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRA 102
           DH H   P +  +P +  + D  D +VYQ G   +PD RA
Sbjct: 193 DHIHTDRPWLATDPTLAPWPDVADPAVYQPGAWLLPDKRA 232


>gi|298294195|ref|YP_003696134.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Starkeya novella DSM 506]
 gi|296930706|gb|ADH91515.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Starkeya novella DSM 506]
          Length = 223

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           V + L D+AHR+   +F + +II  +DD ++ +   L++P Y   V+R   I V+  D N
Sbjct: 112 VSLFLMDYAHRRRLKIFGHMRIIDAADDPALAER--LAVPGYPGRVERLVLIAVQAFDWN 169

Query: 119 AQHQII 124
               I 
Sbjct: 170 CPQHIT 175


>gi|123454549|ref|XP_001315027.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121897691|gb|EAY02804.1| hypothetical protein TVAG_008120 [Trichomonas vaginalis G3]
          Length = 952

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 5   PLVIFPDPILRRVSRPIEK-INSDIMNL--IDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           P + FPD +L+ +S+ I+  + + I  L  IDN+L +MYST  + L A++   +Y+L
Sbjct: 184 PNLSFPDILLKYISKLIQYYLETPISALTNIDNVLHLMYSTASLPLLAIEFEKVYKL 240


>gi|158422958|ref|YP_001524250.1| putative pyridoxine 5`-phosphate oxidase protein [Azorhizobium
           caulinodans ORS 571]
 gi|158329847|dbj|BAF87332.1| putative pyridoxine 5`-phosphate oxidase protein [Azorhizobium
           caulinodans ORS 571]
          Length = 231

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           V + L D+AHR+   +F + +II  +DD ++ Q   L++  Y   ++RS  I V   D N
Sbjct: 123 VSLFLMDYAHRQRLKIFGHARIIDAADDPALTQR--LAVQGYAGRIERSVLIAVEAFDWN 180

Query: 119 AQHQII 124
               I 
Sbjct: 181 CPQHIT 186


>gi|167566564|ref|ZP_02359480.1| BarD [Burkholderia oklahomensis EO147]
          Length = 529

 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 89  VYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           V++ GC+ +P D R    R     +RY+  +    ++ AD  L   L+H L  +  I+ +
Sbjct: 73  VFRAGCVHVPLDPRMPADR-----LRYILHDVAPTLVIADEDLTDALEHALPSVAPIMLV 127

Query: 148 DHLSRLKRDMITKKMSKLVQ 167
             L RL  D  + ++  LVQ
Sbjct: 128 SELERLLADDDSARLDALVQ 147


>gi|90422943|ref|YP_531313.1| bifunctional ADP-heptose synthase [Rhodopseudomonas palustris
           BisB18]
 gi|119365076|sp|Q219E2|HLDE_RHOPB RecName: Full=Bifunctional protein hldE; Includes: RecName:
           Full=D-beta-D-heptose 7-phosphate kinase; AltName:
           Full=D-beta-D-heptose 7-phosphotransferase; Includes:
           RecName: Full=D-beta-D-heptose 1-phosphate
           adenosyltransferase
 gi|90104957|gb|ABD86994.1| D-alpha,beta-D-heptose 7-phosphate 1-kinase / D-beta-D-heptose
           1-phosphate adenylyltransferase [Rhodopseudomonas
           palustris BisB18]
          Length = 490

 Score = 35.0 bits (79), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 30  NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV 89
            LID +L+ + + D + L+    GVL   ++ ++ D A + N  V ++PK    S +F++
Sbjct: 140 QLIDAILQQLPAADIVLLSDYAKGVLTARLIREVIDAARKLNKRVIVDPK----SPNFAL 195

Query: 90  YQEGCLSIPDYR--ADVKRSAFITVRYMDCNAQHQIIYAD 127
           Y+   L  P+ +  A+  RS   +   +  +A+  I  AD
Sbjct: 196 YRGATLLTPNRKEFAEATRSRADSQAEIAASAREAIAVAD 235


>gi|253795648|ref|YP_003038744.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem]
 gi|253739956|gb|ACT34291.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem]
          Length = 166

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V +    +  +      +E CLS+    + V RS  +    +   A+   +   G+ A C
Sbjct: 71  VIVGSARVRLAGCARESREACLSLTSAVSVVARSWRVCAVAL--AARAGALSVRGVAACC 128

Query: 134 LQHELDHLNGILFID 148
            QHELDH+ G+L  D
Sbjct: 129 CQHELDHVVGVLIAD 143


>gi|159186670|ref|NP_396485.2| hypothetical protein Atu5548 [Agrobacterium tumefaciens str. C58]
 gi|159141730|gb|AAK90926.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 189

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           V + L D+AHR+   +F + ++I  +DD  +     L++PDY A V+R   I V   D N
Sbjct: 112 VSLFLMDYAHRRRLKIFGHVRVIDANDDQEL--AARLTMPDYPARVERLILIAVEAYDWN 169

Query: 119 AQHQII 124
               I 
Sbjct: 170 CPQHIT 175


Searching..................................................done


Results from round 2




>gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039974|gb|ACT56770.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 170

 Score =  251 bits (641), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV
Sbjct: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ
Sbjct: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD
Sbjct: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170


>gi|227820644|ref|YP_002824614.1| peptide deformylase [Sinorhizobium fredii NGR234]
 gi|227339643|gb|ACP23861.1| peptide deformylase [Sinorhizobium fredii NGR234]
          Length = 174

 Score =  244 bits (623), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 100/169 (59%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPILRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPKI+  S++ SVY+EGCLSIPDY A+V+R A I V Y+D + +
Sbjct: 61  LDVSKEGEEKTPLVFINPKIVKSSEERSVYEEGCLSIPDYYAEVERPAAIAVEYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K  + R
Sbjct: 121 QQSVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169


>gi|116250199|ref|YP_766037.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254847|emb|CAK05921.1| putative peptide deformylase (polypeptide deformylase) [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 171

 Score =  243 bits (621), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE+++SD+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ S+Y+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDISREGEEKQPQVFINPEIVKSSDERSLYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|254720138|ref|ZP_05181949.1| peptide deformylase [Brucella sp. 83/13]
 gi|265985144|ref|ZP_06097879.1| peptide deformylase [Brucella sp. 83/13]
 gi|306838492|ref|ZP_07471332.1| peptide deformylase [Brucella sp. NF 2653]
 gi|264663736|gb|EEZ33997.1| peptide deformylase [Brucella sp. 83/13]
 gi|306406424|gb|EFM62663.1| peptide deformylase [Brucella sp. NF 2653]
          Length = 175

 Score =  243 bits (621), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 90/169 (53%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +FINP I+  SD+ S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFINPTIVQSSDERSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|218460831|ref|ZP_03500922.1| peptide deformylase [Rhizobium etli Kim 5]
          Length = 171

 Score =  243 bits (620), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQLSQPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|218513698|ref|ZP_03510538.1| peptide deformylase [Rhizobium etli 8C-3]
          Length = 171

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 132/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP LR++S+PIE++++++  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPFLRQLSKPIERVDAELQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|190890084|ref|YP_001976626.1| peptide deformylase [Rhizobium etli CIAT 652]
 gi|190695363|gb|ACE89448.1| peptide deformylase protein [Rhizobium etli CIAT 652]
          Length = 171

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|209547667|ref|YP_002279584.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533423|gb|ACI53358.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 171

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 132/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+ S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQASKPIERVDADLQGLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+++D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKFLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|241202826|ref|YP_002973922.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856716|gb|ACS54383.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 171

 Score =  242 bits (618), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE+++SD+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+++  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDIAREGEEKQPQVFINPEVVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|327191106|gb|EGE58154.1| peptide deformylase protein [Rhizobium etli CNPAF512]
          Length = 171

 Score =  241 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 132/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVEYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|189023113|ref|YP_001932854.1| peptide deformylase [Brucella abortus S19]
 gi|254690651|ref|ZP_05153905.1| peptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|254696044|ref|ZP_05157872.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|254699153|ref|ZP_05160981.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700229|ref|ZP_05162057.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|254703350|ref|ZP_05165178.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|254705509|ref|ZP_05167337.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|254710740|ref|ZP_05172551.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|254732597|ref|ZP_05191175.1| peptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|256029123|ref|ZP_05442737.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|256043903|ref|ZP_05446822.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256058806|ref|ZP_05449022.1| peptide deformylase [Brucella neotomae 5K33]
 gi|256111033|ref|ZP_05452095.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|256157315|ref|ZP_05455233.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|256253707|ref|ZP_05459243.1| peptide deformylase [Brucella ceti B1/94]
 gi|256255833|ref|ZP_05461369.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|256262077|ref|ZP_05464609.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
 gi|260167785|ref|ZP_05754596.1| peptide deformylase [Brucella sp. F5/99]
 gi|260545098|ref|ZP_05820919.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260565079|ref|ZP_05835564.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260567720|ref|ZP_05838189.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260756222|ref|ZP_05868570.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|260760409|ref|ZP_05872757.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|260763649|ref|ZP_05875981.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882046|ref|ZP_05893660.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|261216476|ref|ZP_05930757.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|261220844|ref|ZP_05935125.1| peptide deformylase [Brucella ceti B1/94]
 gi|261312913|ref|ZP_05952110.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|261318308|ref|ZP_05957505.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|261322743|ref|ZP_05961940.1| peptide deformylase [Brucella neotomae 5K33]
 gi|261750724|ref|ZP_05994433.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|261753980|ref|ZP_05997689.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|261757222|ref|ZP_06000931.1| peptide deformylase [Brucella sp. F5/99]
 gi|265986106|ref|ZP_06098663.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|265990325|ref|ZP_06102882.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265992568|ref|ZP_06105125.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|265995800|ref|ZP_06108357.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|294853988|ref|ZP_06794660.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
 gi|297249202|ref|ZP_06932903.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|54036953|sp|P63914|DEF_BRUSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040741|sp|P63913|DEF_BRUME RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189021687|gb|ACD74408.1| Formylmethionine deformylase [Brucella abortus S19]
 gi|260098369|gb|EEW82243.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260152722|gb|EEW87815.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260154385|gb|EEW89466.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260670727|gb|EEX57667.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|260674070|gb|EEX60891.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676330|gb|EEX63151.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|260871574|gb|EEX78643.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|260918083|gb|EEX84944.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|260919428|gb|EEX86081.1| peptide deformylase [Brucella ceti B1/94]
 gi|261297531|gb|EEY01028.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|261298723|gb|EEY02220.1| peptide deformylase [Brucella neotomae 5K33]
 gi|261301939|gb|EEY05436.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|261737206|gb|EEY25202.1| peptide deformylase [Brucella sp. F5/99]
 gi|261740477|gb|EEY28403.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|261743733|gb|EEY31659.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|262550097|gb|EEZ06258.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|262763438|gb|EEZ09470.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|263000994|gb|EEZ13684.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263091766|gb|EEZ16097.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
 gi|264658303|gb|EEZ28564.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|294819643|gb|EFG36643.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
 gi|297173071|gb|EFH32435.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|326411197|gb|ADZ68261.1| peptide deformylase [Brucella melitensis M28]
 gi|326554488|gb|ADZ89127.1| peptide deformylase [Brucella melitensis M5-90]
          Length = 175

 Score =  241 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|17988608|ref|NP_541241.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|23500757|ref|NP_700197.1| peptide deformylase [Brucella suis 1330]
 gi|62317863|ref|YP_223716.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941]
 gi|83269841|ref|YP_419132.1| peptide deformylase [Brucella melitensis biovar Abortus 2308]
 gi|148557936|ref|YP_001257946.1| peptide deformylase [Brucella ovis ATCC 25840]
 gi|161621082|ref|YP_001594968.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163845148|ref|YP_001622803.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|225629484|ref|ZP_03787517.1| peptide deformylase [Brucella ceti str. Cudo]
 gi|225686789|ref|YP_002734761.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|237817404|ref|ZP_04596396.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|256015794|ref|YP_003105803.1| peptide deformylase [Brucella microti CCM 4915]
 gi|17984410|gb|AAL53505.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|23464412|gb|AAN34202.1| polypeptide deformylase [Brucella suis 1330]
 gi|62198056|gb|AAX76355.1| Def-2, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941]
 gi|82940115|emb|CAJ13163.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus
           2308]
 gi|148369221|gb|ABQ62093.1| peptide deformylase [Brucella ovis ATCC 25840]
 gi|161337893|gb|ABX64197.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163675871|gb|ABY39981.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|225615980|gb|EEH13029.1| peptide deformylase [Brucella ceti str. Cudo]
 gi|225642894|gb|ACO02807.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|237788217|gb|EEP62433.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|255998454|gb|ACU50141.1| peptide deformylase [Brucella microti CCM 4915]
          Length = 187

 Score =  241 bits (616), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 13  MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 73  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 132

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 133 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 181


>gi|306840227|ref|ZP_07473002.1| peptide deformylase [Brucella sp. BO2]
 gi|306289832|gb|EFM61011.1| peptide deformylase [Brucella sp. BO2]
          Length = 175

 Score =  241 bits (615), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 118/169 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|306846236|ref|ZP_07478798.1| peptide deformylase [Brucella sp. BO1]
 gi|306273487|gb|EFM55348.1| peptide deformylase [Brucella sp. BO1]
          Length = 175

 Score =  240 bits (614), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 118/169 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKCSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMDADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|150395282|ref|YP_001325749.1| peptide deformylase [Sinorhizobium medicae WSM419]
 gi|150026797|gb|ABR58914.1| peptide deformylase [Sinorhizobium medicae WSM419]
          Length = 174

 Score =  240 bits (614), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E +++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPVLRQVSTPVETVDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 61  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K  + R
Sbjct: 121 EQAVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169


>gi|163757845|ref|ZP_02164934.1| peptide deformylase [Hoeflea phototrophica DFL-43]
 gi|162285347|gb|EDQ35629.1| peptide deformylase [Hoeflea phototrophica DFL-43]
          Length = 172

 Score =  240 bits (613), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 95/169 (56%), Positives = 127/169 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLV+ PDPILR+ S P+E++++++   ID+MLE MY   GIGLAA+Q+GV  RL+V
Sbjct: 1   MTIKPLVLLPDPILRQQSLPVERVDAELEGFIDDMLETMYDAPGIGLAAIQVGVPRRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K+P VFINP+++   D  SVY+EGCLSIPDY ADV+R   ITV+Y+  + +
Sbjct: 61  IDVAGKDEPKSPQVFINPEVVATGDGISVYEEGCLSIPDYYADVERPETITVKYLGRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                ADGLLATCLQHE+DHLNG+LFIDH+S+LKRDM+ +K +KL + R
Sbjct: 121 EHTTEADGLLATCLQHEIDHLNGVLFIDHISKLKRDMVVRKFTKLAKQR 169


>gi|86356069|ref|YP_467961.1| peptide deformylase [Rhizobium etli CFN 42]
 gi|86280171|gb|ABC89234.1| peptide deformylase protein [Rhizobium etli CFN 42]
          Length = 171

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SDD SVY+EGCLSIPDY A+V+R A ++V+Y+D   +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDDRSVYEEGCLSIPDYYAEVERPATVSVKYLDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|153008675|ref|YP_001369890.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
 gi|151560563|gb|ABS14061.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
          Length = 175

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 92/169 (54%), Positives = 121/169 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLVILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P VFINP+I+  +D+ S Y+EGCLSIPDY A+V+R A I V Y D + +
Sbjct: 61  IDLAKEDEPKAPHVFINPEIVGVTDEVSTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +I ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 QHLIEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|254712790|ref|ZP_05174601.1| peptide deformylase [Brucella ceti M644/93/1]
 gi|254715859|ref|ZP_05177670.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261217620|ref|ZP_05931901.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261320497|ref|ZP_05959694.1| peptide deformylase [Brucella ceti M644/93/1]
 gi|260922709|gb|EEX89277.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261293187|gb|EEX96683.1| peptide deformylase [Brucella ceti M644/93/1]
          Length = 175

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDALGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|23396548|sp|Q92SH6|DEF_RHIME RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
          Length = 174

 Score =  238 bits (608), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 61  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K  + R
Sbjct: 121 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 169


>gi|218672914|ref|ZP_03522583.1| peptide deformylase [Rhizobium etli GR56]
          Length = 171

 Score =  238 bits (607), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 134/169 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQLSQPIERMDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|239832661|ref|ZP_04680990.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
 gi|239824928|gb|EEQ96496.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
          Length = 175

 Score =  237 bits (606), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/166 (53%), Positives = 119/166 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLLILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P VFINP+I+  +D+ S Y+EGCLSIPDY A+V+R A I V Y D + +
Sbjct: 61  IDLAKEGEPKAPHVFINPEIVGVTDEASTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL 
Sbjct: 121 PHAMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLA 166


>gi|15964172|ref|NP_384525.1| peptide deformylase [Sinorhizobium meliloti 1021]
 gi|307301317|ref|ZP_07581079.1| peptide deformylase [Sinorhizobium meliloti BL225C]
 gi|307317988|ref|ZP_07597425.1| peptide deformylase [Sinorhizobium meliloti AK83]
 gi|15073348|emb|CAC41856.1| Probable peptide deformylase [Sinorhizobium meliloti 1021]
 gi|306896390|gb|EFN27139.1| peptide deformylase [Sinorhizobium meliloti AK83]
 gi|306903773|gb|EFN34360.1| peptide deformylase [Sinorhizobium meliloti BL225C]
          Length = 178

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 5   MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 65  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K  + R
Sbjct: 125 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 173


>gi|110632755|ref|YP_672963.1| peptide deformylase [Mesorhizobium sp. BNC1]
 gi|122966266|sp|Q11LC7|DEF_MESSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110283739|gb|ABG61798.1| peptide deformylase [Chelativorans sp. BNC1]
          Length = 177

 Score =  237 bits (605), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 90/169 (53%), Positives = 128/169 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV  PDP+LR+VS+P+E+++  +     +MLE MY   GIGLAA+Q+G   R++V
Sbjct: 1   MAIRPLVTLPDPLLRQVSKPVERVDESLRKFAGDMLETMYDAPGIGLAAIQVGEPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +    KNP VFINP+I++ SD  S ++EGCLSIPDY A+V+R A +TV+Y+D + +
Sbjct: 61  LDVAEKDEPKNPQVFINPEIVSRSDVPSFHEEGCLSIPDYYAEVERPAEVTVKYVDLDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            QI+ A G+LATCLQHE+DHLNG+LFID+LS+LKRDM+ +K  KL + R
Sbjct: 121 EQIVEAKGILATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFRKLAKDR 169


>gi|319780347|ref|YP_004139823.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166235|gb|ADV09773.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 176

 Score =  236 bits (604), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 95/169 (56%), Positives = 127/169 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   RL+V
Sbjct: 1   MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P VFINP+I+  +D  SVY+EGCLSIPDY A+V+R A + V+Y+D + +
Sbjct: 61  IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q I A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL + +
Sbjct: 121 LQEIEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKKLARDK 169


>gi|118589715|ref|ZP_01547120.1| peptide deformylase [Stappia aggregata IAM 12614]
 gi|118437801|gb|EAV44437.1| peptide deformylase [Stappia aggregata IAM 12614]
          Length = 202

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 93/168 (55%), Positives = 121/168 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP+LR V  P+  ++ D+  L D+MLE MY   GIGLAA QIG+L R+ V
Sbjct: 31  MTIRPIITIPDPVLREVCAPVATVDDDVRKLADDMLETMYDAPGIGLAASQIGLLQRIFV 90

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K PMVFINPKI+  SDD SVYQEGCLSIPDY  +V+R A +TV++++    
Sbjct: 91  LDVAKDDAPKEPMVFINPKIVWSSDDLSVYQEGCLSIPDYYEEVERPAEVTVQFLNREGA 150

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K  ++
Sbjct: 151 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKM 198


>gi|328545268|ref|YP_004305377.1| peptide deformylase 1 [polymorphum gilvum SL003B-26A1]
 gi|326415010|gb|ADZ72073.1| Peptide deformylase 1 [Polymorphum gilvum SL003B-26A1]
          Length = 172

 Score =  235 bits (601), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/170 (52%), Positives = 121/170 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++I PDP+LR+   P+ K++  I  L D+MLE MY+  GIGLAA QIGVL RL V
Sbjct: 1   MTKRDILIIPDPVLRQHCEPVVKVDDAIRKLADDMLETMYAAPGIGLAASQIGVLKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      + PMVFINP+I+  S++ SVYQEGCLSIP+Y  +V+R A + VR+ + +  
Sbjct: 61  LDVAKEDQPRAPMVFINPEIVWASEEMSVYQEGCLSIPEYYEEVERPASVRVRFFNRDGD 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q + ADGLLATC+QHE DHLNG LFID+LS+LKRD + KK +K  +  +
Sbjct: 121 EQELQADGLLATCIQHEYDHLNGRLFIDYLSKLKRDRVVKKFAKQARHAE 170


>gi|307943158|ref|ZP_07658503.1| peptide deformylase [Roseibium sp. TrichSKD4]
 gi|307773954|gb|EFO33170.1| peptide deformylase [Roseibium sp. TrichSKD4]
          Length = 196

 Score =  235 bits (601), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 93/168 (55%), Positives = 122/168 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++  PD  LR V  P+E +++DI  L D+M E MY+  GIGLAA QIGVL RL V
Sbjct: 23  MTKRSILTIPDAQLREVCAPVETVDADIKALADDMFETMYAAPGIGLAASQIGVLKRLFV 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K+PMVFINPKI+  S+D SVYQEGCLSIPDY  D++R A + V++++ +  
Sbjct: 83  LDVAKEDAPKDPMVFINPKIVWSSEDTSVYQEGCLSIPDYYEDIERPAKVRVQFLNRDGA 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + ADGLLATC+QHELDHL G LFID+LS+LKRD + KK +KL +L
Sbjct: 143 EQEMEADGLLATCIQHELDHLYGRLFIDYLSKLKRDRVMKKFNKLAKL 190


>gi|110832992|ref|YP_691851.1| peptide deformylase [Alcanivorax borkumensis SK2]
 gi|122959726|sp|Q0VTE1|DEF_ALCBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110646103|emb|CAL15579.1| peptide deformylase [Alcanivorax borkumensis SK2]
          Length = 168

 Score =  234 bits (598), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 118/169 (69%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P+EK++ ++  LID+M E MY+  GIGLAA Q+ V  +L+V
Sbjct: 1   MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMFETMYAAPGIGLAATQVDVHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  ++  PMVFINP+I   +++ + Y+EGCLS+P +   V R A + +  +D +  
Sbjct: 61  MDLSEDHNK--PMVFINPQITPLTEEQAPYEEGCLSVPGFYEKVTRPARVRINALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ + +
Sbjct: 119 AFEVEADELLATCIQHEMDHLDGKLFVDYVSRLKRDRIKKKLEKIHRQQ 167


>gi|222084707|ref|YP_002543236.1| peptide deformylase [Agrobacterium radiobacter K84]
 gi|221722155|gb|ACM25311.1| peptide deformylase [Agrobacterium radiobacter K84]
          Length = 171

 Score =  234 bits (597), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 135/169 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+PIE+++++I+ L D+MLE MY   GIGLAAVQIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQASKPIERVDTEILRLADDMLETMYDAPGIGLAAVQIGVARRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+++  SD+ SVY+EGCLSIPDY A+V+R A +TV+++D + +
Sbjct: 61  IDVAREGEDKQPLVFINPEVVASSDERSVYEEGCLSIPDYYAEVERPARVTVKHIDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q+I ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQLIEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|254429252|ref|ZP_05042959.1| peptide deformylase [Alcanivorax sp. DG881]
 gi|196195421|gb|EDX90380.1| peptide deformylase [Alcanivorax sp. DG881]
          Length = 168

 Score =  234 bits (597), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 79/169 (46%), Positives = 118/169 (69%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P+EK++ ++  LID+M+E MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMIETMYDASGIGLAATQVNVHQRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P V+INP+I   +D+ + Y+EGCLS+P +   VKR+A + +  +D +  
Sbjct: 61  MDLSE--ERNEPKVYINPQITPLTDELAPYEEGCLSVPGFYEKVKRAARVRINALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ + +
Sbjct: 119 AFEVEADELLATCIQHEIDHLDGKLFVDYVSRLKRDRIKKKLEKIHRQQ 167


>gi|15887717|ref|NP_353398.1| peptide deformylase [Agrobacterium tumefaciens str. C58]
 gi|23396541|sp|Q8UID1|DEF_AGRT5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|15155278|gb|AAK86183.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58]
          Length = 170

 Score =  234 bits (597), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 96/169 (56%), Positives = 131/169 (77%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+ IE+++++++ L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQQSKLIEQVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+I+  SDD S Y+EGCLSIPDY A+V+R A +TV+Y+  + +
Sbjct: 61  IDVAREGEEKTPVVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQYVGRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKRDM+ KK +K  + +
Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAARAK 169


>gi|49474898|ref|YP_032939.1| polypeptide deformylase [Bartonella henselae str. Houston-1]
 gi|81696215|sp|Q6G5F0|DEF_BARHE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49237703|emb|CAF26892.1| Polypeptide deformylase [Bartonella henselae str. Houston-1]
          Length = 176

 Score =  233 bits (596), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/170 (51%), Positives = 126/170 (74%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PDPILR +S+P+E I+S +  L D+MLE MY   G+GLAA+QIG+  R++V
Sbjct: 1   MPMRPLVIVPDPILREISKPVEYIDSAVQKLADDMLETMYHAQGVGLAAIQIGIPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+  +  +KNP+V INP+++  SD+ ++Y+EGCLSIP+Y A+V+R   + VRY +   +
Sbjct: 61  LDVSRNDEQKNPLVIINPEVLWLSDERNIYKEGCLSIPEYFAEVERPKRLCVRYQNREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I AD LLATCLQHE+DHLNG LFID+LS++KRDM+ +K  K  + ++
Sbjct: 121 QTEIEADDLLATCLQHEIDHLNGRLFIDYLSKIKRDMVIRKFKKRAKEKN 170


>gi|114705885|ref|ZP_01438788.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506]
 gi|114538731|gb|EAU41852.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506]
          Length = 173

 Score =  233 bits (596), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 87/169 (51%), Positives = 124/169 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S P+ +++  +    D+MLE MY   GIGLAA+Q+G   R++ 
Sbjct: 1   MTIKPLIILPDPVLRKTSEPVARVDDALKRFADDMLETMYEAPGIGLAAIQVGEPLRMLT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VF+NP+I++ S+DFSVY+EGCLSIP+Y A+V+R A ++VRY+  + +
Sbjct: 61  IDISKEEEAKEPRVFLNPEIVSRSEDFSVYEEGCLSIPEYFAEVERPARVSVRYLGLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLATCLQHE+DHLNG+LFID+LS+LKRDM+ KK +K  + +
Sbjct: 121 MHEEEAEGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVIKKFTKAARTK 169


>gi|310815113|ref|YP_003963077.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
 gi|308753848|gb|ADO41777.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
          Length = 173

 Score =  233 bits (595), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 116/169 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP LR +++P+  I+ +I  L D+MLE MY   GIGLA  Q+G L R++V
Sbjct: 1   MTTRPILIHPDPRLRAIAKPLPDISDEIRRLADDMLETMYDAPGIGLAGPQVGQLQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+V +NP+I+  SDD SVY+EGCLSIPD  A+V+R A + VR++D N  
Sbjct: 61  LDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGCLSIPDQYAEVERPASVKVRWLDLNGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    +GL ATC+QHE+DHL+G LFID+L  +KR +IT+KM KL + R
Sbjct: 121 EQDREMEGLWATCVQHEIDHLDGKLFIDYLGPMKRQLITRKMEKLKRER 169


>gi|325291800|ref|YP_004277664.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
           H13-3]
 gi|325059653|gb|ADY63344.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
           H13-3]
          Length = 170

 Score =  233 bits (595), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 100/169 (59%), Positives = 135/169 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ SRPIE+++++++ L D+MLE MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQQSRPIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+I+  SDD S Y+EGCLSIPDY A+V+R A +TVRY+D + +
Sbjct: 61  IDVSREDEEKKPVVFINPEILRVSDDVSAYEEGCLSIPDYYAEVERPASLTVRYVDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           HQ++ ADGLLATCLQHE+DHLNGILFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 HQMVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIKKFTKAARAK 169


>gi|254501503|ref|ZP_05113654.1| peptide deformylase [Labrenzia alexandrii DFL-11]
 gi|222437574|gb|EEE44253.1| peptide deformylase [Labrenzia alexandrii DFL-11]
          Length = 189

 Score =  233 bits (594), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 96/168 (57%), Positives = 124/168 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+P++  PDP+LR V  PIEK++++ + L D+MLE MY   GIGLAA Q+G+L R+ V
Sbjct: 18  MTKRPIITIPDPVLREVCAPIEKVDAETIALADDMLETMYDAPGIGLAASQVGILKRIFV 77

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K PMVFINP+II + D+ SVYQEGCLSIPDY  DV+R A + V++MD    
Sbjct: 78  LDVAKEDAPKEPMVFINPEIIWYGDELSVYQEGCLSIPDYYEDVERPAEVAVKFMDREGA 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K  +L
Sbjct: 138 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKL 185


>gi|26986813|ref|NP_742238.1| peptide deformylase [Pseudomonas putida KT2440]
 gi|148545341|ref|YP_001265443.1| peptide deformylase [Pseudomonas putida F1]
 gi|32363155|sp|Q88RR1|DEF1_PSEPK RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|24981409|gb|AAN65702.1|AE016196_13 polypeptide deformylase [Pseudomonas putida KT2440]
 gi|148509399|gb|ABQ76259.1| peptide deformylase [Pseudomonas putida F1]
 gi|313496440|gb|ADR57806.1| Def [Pseudomonas putida BIRD-1]
          Length = 168

 Score =  233 bits (594), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTLAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSE--DRSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|167031105|ref|YP_001666336.1| peptide deformylase [Pseudomonas putida GB-1]
 gi|166857593|gb|ABY96000.1| peptide deformylase [Pseudomonas putida GB-1]
          Length = 168

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHLQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSE--DRSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|146305096|ref|YP_001185561.1| peptide deformylase [Pseudomonas mendocina ymp]
 gi|166198520|sp|A4XNB3|DEF_PSEMY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145573297|gb|ABP82829.1| peptide deformylase [Pseudomonas mendocina ymp]
          Length = 168

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 110/169 (65%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSE--DKSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + R
Sbjct: 119 PFELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQR 167


>gi|170719274|ref|YP_001746962.1| peptide deformylase [Pseudomonas putida W619]
 gi|169757277|gb|ACA70593.1| peptide deformylase [Pseudomonas putida W619]
          Length = 168

 Score =  232 bits (592), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSE--DRSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|170749551|ref|YP_001755811.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
 gi|170656073|gb|ACB25128.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
          Length = 171

 Score =  231 bits (591), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 85/167 (50%), Positives = 116/167 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PDP+LR  S P+  I ++I  L+ +M E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTIRPLVILPDPVLRLGSEPVGPITAEIRTLVADMFETMYDAPGVGLAAIQIGVPKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       ++  VFINP+I+  S++  VY EGCLSIPDY A+V+R   + V++ D +  
Sbjct: 61  IDTSKEEGVRDARVFINPEIVWSSEEKRVYDEGCLSIPDYYAEVERPDRVRVKFRDLDGT 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + I ADGLL+TC+QHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 EREIEADGLLSTCIQHEIDHLNGVLFIDHLSKLKRDRVIKKFTKAAK 167


>gi|330500987|ref|YP_004377856.1| peptide deformylase [Pseudomonas mendocina NK-01]
 gi|328915273|gb|AEB56104.1| peptide deformylase [Pseudomonas mendocina NK-01]
          Length = 168

 Score =  231 bits (591), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 110/169 (65%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSE--DKSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + R
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQR 167


>gi|90419800|ref|ZP_01227709.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
 gi|90335841|gb|EAS49589.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
          Length = 170

 Score =  231 bits (591), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/167 (54%), Positives = 123/167 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+P+E ++  +  L D+MLE MY   GIGLAA+QIG   R++V
Sbjct: 1   MTIKPLIILPDPVLRQTSKPVETVDDQVRRLADDMLETMYDAPGIGLAAIQIGEPLRMMV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+        P +F+NP+I+T SD  SVY+EGCLSIPDY A+V+R A +TVRY+  + +
Sbjct: 61  IDVSKEEEENAPRIFLNPEILTISDAVSVYEEGCLSIPDYYAEVERPAEVTVRYLGLDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADG+LATC+QHELDHLNG+LFIDH+S+LKRDM+ KK +K  +
Sbjct: 121 MHEETADGILATCVQHELDHLNGVLFIDHISKLKRDMVVKKFTKAAR 167


>gi|330806738|ref|YP_004351200.1| peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374846|gb|AEA66196.1| Peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 168

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP+  T +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSE--DRSEPRVFINPEFETLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL + 
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKLHRQ 166


>gi|68347834|gb|AAY95440.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5]
          Length = 213

 Score =  231 bits (589), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 46  MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 105

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP+    +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 106 MDLSE--DRSEPRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQ 163

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 164 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQQ 212


>gi|319406474|emb|CBI80115.1| polypeptide deformylase [Bartonella sp. 1-1C]
          Length = 176

 Score =  231 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 92/170 (54%), Positives = 123/170 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LVI PDPILR VS+P+E+I+  I  L D+MLE MY+  GIGLAAVQ+GV  R++V
Sbjct: 1   MSIKSLVILPDPILREVSKPVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KNP+V INP+I+  SD+ SVY+EGCLSIPDY A+V+R   + + Y D   +
Sbjct: 61  VDIHPKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLCMCYRDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K  ++++
Sbjct: 121 QVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170


>gi|23009516|ref|ZP_00050535.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 171

 Score =  230 bits (588), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 86/167 (51%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S P+E +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLISEPVEAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVPKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM  + +
Sbjct: 61  IDTSKDETAKNPTVYLNPEIVWASEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK SK  +
Sbjct: 121 TVEREADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFSKAAK 167


>gi|104779338|ref|YP_605836.1| peptide deformylase [Pseudomonas entomophila L48]
 gi|95108325|emb|CAK13019.1| peptide deformylase 1 [Pseudomonas entomophila L48]
          Length = 168

 Score =  230 bits (588), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSE--DRSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PYELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|49473752|ref|YP_031794.1| polypeptide deformylase [Bartonella quintana str. Toulouse]
 gi|81696103|sp|Q6G1G6|DEF_BARQU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49239255|emb|CAF25576.1| Polypeptide deformylase [Bartonella quintana str. Toulouse]
          Length = 176

 Score =  230 bits (588), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 88/170 (51%), Positives = 124/170 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR VS+P+E ++S I  L D+MLE MY   G+GLAA+QIG+  R++V
Sbjct: 1   MPIKPLIILPDPILREVSKPVEHVDSTIQKLADDMLETMYDAQGVGLAAIQIGIPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+  +  +KNP+V INP+I+  SD+ ++ +EGCLSIP+Y  +++R   + VRY D   +
Sbjct: 61  IDVSRNETQKNPLVIINPEILWLSDERNICKEGCLSIPEYYTEIERPKRLCVRYQDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K  K  + ++
Sbjct: 121 QTEIEADHLLATCLQHEIDHLNGRLFIDHISKIKRDMVIRKFKKRAKEKN 170


>gi|116053739|ref|YP_788174.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313111460|ref|ZP_07797261.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
 gi|115588960|gb|ABJ14975.1| polypeptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310883763|gb|EFQ42357.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
          Length = 168

 Score =  230 bits (588), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSE--DKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|254477024|ref|ZP_05090410.1| peptide deformylase [Ruegeria sp. R11]
 gi|214031267|gb|EEB72102.1| peptide deformylase [Ruegeria sp. R11]
          Length = 189

 Score =  230 bits (587), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 114/169 (67%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  +   +  L D+MLE MY+  G+GLAA QIGVL RL+V+
Sbjct: 18  MKRPILIHPDPRLKKVCAEVPDLTDAMRTLADDMLETMYAAPGVGLAAPQIGVLDRLIVL 77

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NPKI++ SD+ +VY+EGCLSIPD  A+V R   + V +M+ +  
Sbjct: 78  DCAKEDEESPRPLVMFNPKIVSASDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMNRDGN 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 138 AARETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 186


>gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From Pseudomonas
           Aeruginosa
 gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From Pseudomonas
           Aeruginosa
 gi|47168958|pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide
           Deformylase Inhibitors
 gi|47168959|pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide
           Deformylase Inhibitors
          Length = 180

 Score =  230 bits (587), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 13  MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 73  MDLSE--DKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 131 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 179


>gi|192358847|ref|YP_001984035.1| peptide deformylase [Cellvibrio japonicus Ueda107]
 gi|238692437|sp|B3PGY7|DEF_CELJU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190685012|gb|ACE82690.1| peptide deformylase [Cellvibrio japonicus Ueda107]
          Length = 169

 Score =  230 bits (587), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/164 (45%), Positives = 103/164 (62%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR V++P+ +++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILEFPDPRLRTVAKPVTQVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  P+VFINP+I    ++ S Y EGCLS+P +   V+R   I V+ +D    
Sbjct: 61  IDVSE--DKSQPLVFINPEIEVLDEELSQYDEGCLSVPGFYETVERPGHIRVKALDRAGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   GLLA C+QHELDHLNG LF+DH+S  KR  I  K+ K
Sbjct: 119 AFELQPQGLLAVCIQHELDHLNGKLFVDHISPFKRSRIRSKLEK 162


>gi|49081366|gb|AAT50122.1| PA0019 [synthetic construct]
          Length = 169

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSE--DKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|326388512|ref|ZP_08210106.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206977|gb|EGD57800.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 189

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 83/187 (44%), Positives = 114/187 (60%), Gaps = 20/187 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L++VS+P+E  + ++  L+ +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILEVPDPRLKQVSKPVEVFDDELKTLVADMFETMYDAPGIGLAAIQVGVPLRVLV 60

Query: 61  IDLQDHAH--------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           IDLQ                        +K P+VFINP + + S+D +VY EGCLS+P+ 
Sbjct: 61  IDLQPDDPDAEPEVCTAHGGHHHTHQPTKKEPLVFINPVLSSLSEDLAVYNEGCLSVPEI 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+V R + I  R+ D +        D LLATCLQHE+DHL GILFIDHLSRLKR M  K
Sbjct: 121 YAEVTRPSRIHARWQDLDGNVHEAEIDDLLATCLQHEMDHLEGILFIDHLSRLKRQMALK 180

Query: 161 KMSKLVQ 167
           K+ KL +
Sbjct: 181 KLEKLRR 187


>gi|163738219|ref|ZP_02145635.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
 gi|163743813|ref|ZP_02151186.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161382962|gb|EDQ07358.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161388835|gb|EDQ13188.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
          Length = 172

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  ++  +  L D+MLE MY+  GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKVCAAVPDMSDALRTLADDMLETMYAAPGIGLAAPQIGVLDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+++  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 61  DCVKEEDGPARPLVMFNPEVVASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|77456245|ref|YP_345750.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
 gi|77380248|gb|ABA71761.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
          Length = 168

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + +
Sbjct: 61  MDLSE--DRTEPRVFINPEFESLTDEMEQYQEGCLSVPGFYENVDRPQKVKIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + 
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166


>gi|237749120|ref|ZP_04579600.1| peptide deformylase [Oxalobacter formigenes OXCC13]
 gi|229380482|gb|EEO30573.1| peptide deformylase [Oxalobacter formigenes OXCC13]
          Length = 208

 Score =  229 bits (586), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L + SRP+      + +LI +M + MY   G+GLAA QI V  +L+V
Sbjct: 30  MARLPILRYPDPRLLKPSRPVTDFGDSLKSLIADMAQTMYEAPGVGLAAPQINVHKQLIV 89

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+  S++ ++++EGCLS+P    +++R A +TVR +D N +
Sbjct: 90  IDVSEQ--KNELRVFINPQIVKASEEKAIFEEGCLSLPGIYDEIERPAKVTVRALDANGK 147

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K  + 
Sbjct: 148 EFELEAEGLLAVCVQHEIDHLKGSIFVDYLSPMKRNRIKKKLLKEERE 195


>gi|319898269|ref|YP_004158362.1| polypeptide deformylase [Bartonella clarridgeiae 73]
 gi|319402233|emb|CBI75766.1| polypeptide deformylase [Bartonella clarridgeiae 73]
          Length = 171

 Score =  229 bits (586), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 91/170 (53%), Positives = 125/170 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDPILR VS+P+E I+S I  L D+MLE MY+  GIGLAAVQ+GV  R++V
Sbjct: 1   MPIKPLVILPDPILREVSKPVEHIDSIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KNP+V INP+I+  S++ ++Y+EGCLSIP+Y A+V+R  ++ + Y D   +
Sbjct: 61  LDISSKDAPKNPLVVINPEILWISNERNIYREGCLSIPEYYAEVERPKYLRICYRDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K  K  + ++
Sbjct: 121 QAEIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKFKKRAKKQN 170


>gi|226942187|ref|YP_002797260.1| peptide deformylase [Azotobacter vinelandii DJ]
 gi|259645177|sp|C1DFV8|DEF_AZOVD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|226717114|gb|ACO76285.1| Formylmethionine deformylase protein [Azotobacter vinelandii DJ]
          Length = 168

 Score =  229 bits (586), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++PIE ++  I  LID+M E MY+  GIGLAA Q+ V  RLVV
Sbjct: 1   MAILTILEFPDPRLRTIAKPIETVDDGIRRLIDDMFETMYAAPGIGLAATQVNVHKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP+    +++   YQEGCLS+P +  +V R   + +R +D + Q
Sbjct: 61  MDLSE--DKNEPRVFINPEFEALTEELEPYQEGCLSVPGFYENVDRPQKVRIRALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + 
Sbjct: 119 PFELVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166


>gi|146280418|ref|YP_001170571.1| peptide deformylase [Pseudomonas stutzeri A1501]
 gi|158514117|sp|A4VFH8|DEF_PSEU5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145568623|gb|ABP77729.1| polypeptide deformylase [Pseudomonas stutzeri A1501]
 gi|327478634|gb|AEA81944.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
          Length = 168

 Score =  229 bits (586), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVDVVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP+    +D    YQEGCLS+P +  +V R   + ++ +D + +
Sbjct: 61  MDLSE--DRSEPRVFINPEFEPLTDQMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K+ + +
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEKIHRQQ 167


>gi|84685501|ref|ZP_01013399.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666658|gb|EAQ13130.1| peptide deformylase [Rhodobacterales bacterium HTCC2654]
          Length = 173

 Score =  229 bits (586), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 83/170 (48%), Positives = 117/170 (68%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++I PDP L++ +  +  +  +++ L D+MLE MY   GIGLAA Q+GVL RL+V
Sbjct: 1   MALKPILIHPDPRLKKEAEKVRDVTDELLTLADDMLETMYDAPGIGLAAPQVGVLQRLIV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  +D +    P+V  NP++I  SDD +VY+EGCLSIPD  A+V R A + VR+++   
Sbjct: 61  LDCIKDESAEPQPLVMFNPEVILSSDDTNVYEEGCLSIPDQYAEVTRPAAVKVRWLNRAG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q    +GL ATC+QHE+DHLNG LFID+LS +KR MIT+K  KL + R
Sbjct: 121 EEQERDFEGLWATCVQHEIDHLNGKLFIDYLSPMKRQMITRKSQKLKRER 170


>gi|15595217|ref|NP_248709.1| peptide deformylase [Pseudomonas aeruginosa PAO1]
 gi|107099012|ref|ZP_01362930.1| hypothetical protein PaerPA_01000019 [Pseudomonas aeruginosa PACS2]
 gi|218888765|ref|YP_002437629.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
 gi|254237739|ref|ZP_04931062.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
 gi|254243131|ref|ZP_04936453.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
 gi|296386491|ref|ZP_06875990.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
 gi|17432949|sp|Q9I7A8|DEF_PSEAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase [Pseudomonas aeruginosa PAO1]
 gi|126169670|gb|EAZ55181.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
 gi|126196509|gb|EAZ60572.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
 gi|218768988|emb|CAW24746.1| polypeptide deformylase [Pseudomonas aeruginosa LESB58]
          Length = 168

 Score =  229 bits (586), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSE--DKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|254510174|ref|ZP_05122241.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
 gi|221533885|gb|EEE36873.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
          Length = 172

 Score =  229 bits (585), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 84/169 (49%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P+  I  D+  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRNILIHPDPRLKKVCAPVADITDDLRKLADDMLETMYDAPGIGLAAPQIGVLDRLIVV 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP++I  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 61  DCVKEEGETPRPLVMFNPQVIASSDEINVYEEGCLSIPDQYAEVTRPRTVDVTWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    D L ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + +
Sbjct: 121 LQQETFDDLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKREK 169


>gi|299132603|ref|ZP_07025798.1| peptide deformylase [Afipia sp. 1NLS2]
 gi|298592740|gb|EFI52940.1| peptide deformylase [Afipia sp. 1NLS2]
          Length = 189

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/168 (49%), Positives = 117/168 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LR VS P++KI  +I  L ++M E MY   GIGLAA+Q+ V  RL+ 
Sbjct: 19  MAIREIISIPDKRLRLVSEPVDKITPEIRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P VFINP+I++ SDD SVY+EGCLSIP+Y  +V+R A + +RYMD + +
Sbjct: 79  MDVSKKEGEKVPRVFINPEILSKSDDVSVYEEGCLSIPEYYEEVERPASVRIRYMDLDGK 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GL ATC+QHE+DH+NG+LFID+LS+LKRD + KK +K  +L
Sbjct: 139 VHEEDAEGLFATCIQHEIDHINGVLFIDYLSKLKRDRVMKKFTKAAKL 186


>gi|126738021|ref|ZP_01753742.1| peptide deformylase [Roseobacter sp. SK209-2-6]
 gi|126720518|gb|EBA17223.1| peptide deformylase [Roseobacter sp. SK209-2-6]
          Length = 172

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++I PDP L++   P+  ++  +  L D+MLE MY+  GIGLAA QIG++ RL+V+
Sbjct: 1   MKHPILIHPDPRLKKTCVPVADLSDKLRILADDMLETMYAAPGIGLAAPQIGIMQRLIVL 60

Query: 62  DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D + +      P+V  NP+I+  S++ +VY+EGCLSIP+  A+V R   + VR++D +  
Sbjct: 61  DCEKEEGSSGKPLVMFNPEILASSEETNVYEEGCLSIPEQFAEVTRPKVVDVRWIDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 EQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|294678913|ref|YP_003579528.1| peptide deformylase [Rhodobacter capsulatus SB 1003]
 gi|294477733|gb|ADE87121.1| peptide deformylase-2 [Rhodobacter capsulatus SB 1003]
          Length = 178

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L+++  P+  ++  I  L D+MLE MY   G+GLAA QIGV+ R+ V
Sbjct: 3   MTTRPILIHPDPRLKKLCDPVAALDDTIRQLADDMLETMYDAPGVGLAAPQIGVMSRIFV 62

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  ++       MV INP+I   S++ +V++EGCLS+P+  ADV R   + +R++  + 
Sbjct: 63  MDCAKEKTGFPEAMVMINPEITWVSEEKNVHEEGCLSLPEQYADVTRPKEVRMRWLGLDG 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q      DGL ATC QHELDHLNG LFIDHL  LKR M+T+K+ KL + 
Sbjct: 123 QMHEEQFDGLWATCAQHELDHLNGKLFIDHLGPLKRQMVTRKLEKLKRE 171


>gi|319407942|emb|CBI81596.1| polypeptide deformylase [Bartonella schoenbuchensis R1]
          Length = 174

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 91/167 (54%), Positives = 123/167 (73%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           K LV  PDPILR VS+P+E+I+  I  L D+MLE MY   GIGLAA+Q+GV  R++VID+
Sbjct: 2   KSLVTLPDPILREVSKPVEQIDLAIQKLADDMLETMYHAQGIGLAAIQVGVPLRMLVIDI 61

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            ++   KNP+V INP+I+  SD+ ++Y+EGCLSIP+Y A V+R   + VRY D   +   
Sbjct: 62  AENNTPKNPLVVINPEILWLSDERNIYKEGCLSIPEYYAQVERPKRLRVRYSDREGKQTE 121

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K+ K  + +D
Sbjct: 122 IEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKLKKRAKEKD 168


>gi|169123281|gb|ACA47112.1| peptide deformylase [Pseudomonas putida]
          Length = 168

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP++   +DD   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSE--DRTEPRVFINPELEPLTDDMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+ LLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL + 
Sbjct: 119 PYELIAEDLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKLHRQ 166


>gi|161501956|ref|YP_257174.2| peptide deformylase [Pseudomonas fluorescens Pf-5]
          Length = 168

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP+    +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSE--DRSEPRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQQ 167


>gi|119383399|ref|YP_914455.1| peptide deformylase [Paracoccus denitrificans PD1222]
 gi|119373166|gb|ABL68759.1| peptide deformylase [Paracoccus denitrificans PD1222]
          Length = 173

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 111/170 (65%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ PDP L+++  P+ +I  +I  L  +ML  MY   G+GLAA Q+GVL RL V
Sbjct: 1   MTLRSIILHPDPRLKKICEPVARITPEIETLAADMLATMYDAPGVGLAAPQVGVLSRLYV 60

Query: 61  IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D + D    +NP+V +NP++   S+  + Y+EGCLSIP+  ADV R A + VR++  + 
Sbjct: 61  MDCEKDPEAPRNPIVMVNPEVTWTSEALNTYEEGCLSIPEQYADVTRPAEVRVRWLGLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +      +GL ATC QHE+DHL+G LFIDHL  +KR MIT+KM KL + R
Sbjct: 121 KTHEREFEGLWATCAQHEIDHLDGRLFIDHLGPIKRQMITRKMVKLKRER 170


>gi|296447194|ref|ZP_06889124.1| peptide deformylase [Methylosinus trichosporium OB3b]
 gi|296255253|gb|EFH02350.1| peptide deformylase [Methylosinus trichosporium OB3b]
          Length = 179

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/166 (51%), Positives = 113/166 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP LR VS P+  I+++I  L+D+MLE MY   G+GLAA+Q+ V  R++V
Sbjct: 1   MAIRPIITLPDPRLRLVSEPVAVIDAEIRQLLDDMLETMYDAPGVGLAAIQVAVAKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D       KNPMVFINP+I+  S++  VYQEGCLS+PDY  +V+R A + V ++D    
Sbjct: 61  ADATRGDEPKNPMVFINPQIVWASEELGVYQEGCLSVPDYFEEVQRPARVRVSFLDREGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              I ADGLLAT LQHE+DHL G LFIDHLSRLKR+ + KK  K  
Sbjct: 121 TCEIEADGLLATVLQHEIDHLEGGLFIDHLSRLKRERVVKKFVKAA 166


>gi|34809567|pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
 gi|34809568|pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
          Length = 171

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSE--DKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|152988653|ref|YP_001345416.1| peptide deformylase [Pseudomonas aeruginosa PA7]
 gi|150963811|gb|ABR85836.1| peptide deformylase [Pseudomonas aeruginosa PA7]
          Length = 168

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D + +
Sbjct: 61  MDLSE--DKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGRLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|260432735|ref|ZP_05786706.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416563|gb|EEX09822.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 172

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/168 (51%), Positives = 118/168 (70%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P++ ++ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRNILIHPDPRLKKVCAPVDDLSDELRALADDMLETMYDAPGIGLAAPQIGVLERLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+II+ SD+ SVY+EGCLSIPD  A+V R A + V +MD N +
Sbjct: 61  DCVKEEGATPRPLVMFNPEIISASDETSVYEEGCLSIPDQFAEVTRPAEVEVAWMDQNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + 
Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRE 168


>gi|83309342|ref|YP_419606.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
           AMB-1]
 gi|82944183|dbj|BAE49047.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
           AMB-1]
          Length = 190

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 117/170 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+L+  S+P+  ++  I  L+ +ML+ MY   GIGLAA QIGVL R++V
Sbjct: 21  MAVLPILTAPDPVLKSKSKPVATVDDRIRTLLADMLDTMYHAPGIGLAAPQIGVLERVIV 80

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      + P+  +NP+I+  SD+ + Y+EGCLS+P++ ++V R A + VRY+D    
Sbjct: 81  MDIGRKEEDRAPIRMVNPEIVWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 140

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q I ADGLLAT +QHE+DHL+GILFIDHLS LKR+MI +K+ K  +  +
Sbjct: 141 KQEILADGLLATVVQHEMDHLDGILFIDHLSSLKRNMILRKLLKARKESE 190


>gi|89070116|ref|ZP_01157446.1| peptide deformylase [Oceanicola granulosus HTCC2516]
 gi|89044337|gb|EAR50480.1| peptide deformylase [Oceanicola granulosus HTCC2516]
          Length = 176

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 115/170 (67%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+P++I PDP L+  + P+ +I  ++  L D+MLE MY   GIGLAA Q+GVL R++V
Sbjct: 4   MTKRPILIHPDPRLKTAATPVGEITDEVRRLADDMLETMYDAPGIGLAAPQVGVLKRVLV 63

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  +D      P+V  +P+I+  SD  +VY+EGCLSIPD  A+V+R A + VR+ D   
Sbjct: 64  MDCVKDEGEAPRPLVLCDPEIVWTSDARNVYEEGCLSIPDQYAEVERPAEVEVRWTDLEG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + +
Sbjct: 124 GARRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKREK 173


>gi|163851063|ref|YP_001639106.1| peptide deformylase [Methylobacterium extorquens PA1]
 gi|218529893|ref|YP_002420709.1| peptide deformylase [Methylobacterium chloromethanicum CM4]
 gi|240138197|ref|YP_002962669.1| peptide deformylase [Methylobacterium extorquens AM1]
 gi|254560757|ref|YP_003067852.1| peptide deformylase [Methylobacterium extorquens DM4]
 gi|163662668|gb|ABY30035.1| peptide deformylase [Methylobacterium extorquens PA1]
 gi|218522196|gb|ACK82781.1| peptide deformylase [Methylobacterium chloromethanicum CM4]
 gi|240008166|gb|ACS39392.1| peptide deformylase [Methylobacterium extorquens AM1]
 gi|254268035|emb|CAX23906.1| peptide deformylase [Methylobacterium extorquens DM4]
          Length = 171

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/167 (50%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLTSEPVAAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID     + KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM+ + Q
Sbjct: 61  IDTSKDENAKNPTVYLNPEIVWVSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMNLDGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 IVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167


>gi|260426170|ref|ZP_05780149.1| peptide deformylase [Citreicella sp. SE45]
 gi|260420662|gb|EEX13913.1| peptide deformylase [Citreicella sp. SE45]
          Length = 176

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/170 (50%), Positives = 121/170 (71%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L+++  P+  ++ D+  L D+MLE MY   GIGLAA Q+G+L+RL+V+
Sbjct: 4   MKRPILIHPDPRLKKLCDPVADLSDDLRTLADDMLETMYDAPGIGLAAPQVGILHRLIVL 63

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D   QD+     P+V INP+I+  SD+ SVY+EGCLSIPD  ADV+R   + V ++D + 
Sbjct: 64  DCAKQDNGETPRPLVMINPRILASSDERSVYEEGCLSIPDQYADVERPKMVEVEWLDRDG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 124 KLQKEEFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRER 173


>gi|163867376|ref|YP_001608570.1| peptide deformylase [Bartonella tribocorum CIP 105476]
 gi|189083066|sp|A9ILK4|DEF_BART1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|161017017|emb|CAK00575.1| polypeptide deformylase [Bartonella tribocorum CIP 105476]
          Length = 178

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/172 (51%), Positives = 126/172 (73%), Gaps = 2/172 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + LV  PDPILR VS+P+E++++ +  L D+MLE MY   GIGLAA+QIG+  R++V
Sbjct: 1   MPMRSLVTLPDPILREVSKPVEQVDTALQELADDMLETMYHAKGIGLAAIQIGIPLRMLV 60

Query: 61  IDLQDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+  +A   +K P+V INP+I+  SD+ +VY+EGCLSIPDY A+V+R   + VRY +  
Sbjct: 61  IDVSGNAEDTQKKPLVIINPEILWLSDERNVYKEGCLSIPDYFAEVERPKRLRVRYQNRE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + + I AD LLATCLQHE+DHL+G LFID++SR+KRDM+ +K  K  + ++
Sbjct: 121 GKQKEIEADDLLATCLQHEIDHLDGRLFIDYISRIKRDMVIRKFKKRAKEKN 172


>gi|319404989|emb|CBI78592.1| polypeptide deformylase [Bartonella sp. AR 15-3]
          Length = 171

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/167 (52%), Positives = 120/167 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDPILR VS+P+E I+  I  L D+MLE MY+  G+GLAAVQ+G+  R++V
Sbjct: 1   MSIKPLVILPDPILREVSKPVEHIDPIIQKLADDMLETMYNAQGVGLAAVQVGIPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KN +V INP+I+  SD+ SVY+EGCLSIP+Y A+V+R   + + Y +   +
Sbjct: 61  VDISPKDAPKNSLVVINPEILWISDERSVYREGCLSIPEYFAEVERPKCLRISYKNREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K  +
Sbjct: 121 QEEIEANDLLATCLQHEIDHLNGYLFIDHISKTKRDMVIRKFKKRAK 167


>gi|254467295|ref|ZP_05080706.1| peptide deformylase [Rhodobacterales bacterium Y4I]
 gi|206688203|gb|EDZ48685.1| peptide deformylase [Rhodobacterales bacterium Y4I]
          Length = 182

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/169 (50%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  ++ D+  L D+MLE MY+  GIGLAA QIG+L RL+V+
Sbjct: 11  MKRPILIHPDPRLKKVCAAVPDLSDDLRVLADDMLETMYAAPGIGLAAPQIGILQRLIVL 70

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+II  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 71  DCVKEEDGDPRPLVMFNPEIIASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRSGN 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 131 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 179


>gi|330720123|gb|EGG98527.1| Peptide deformylase [gamma proteobacterium IMCC2047]
          Length = 168

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR  + PI  ++  I  L D+MLE MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILEFPDPRLRNKALPINDVDDSIRKLADDMLETMYYAPGIGLAATQVNVQKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  P+VFINP++    D F    EGCLS+P +   V+R   I VR  D N +
Sbjct: 61  IDVSE--DKSQPLVFINPEVEVIGDGFEEMDEGCLSVPGFYETVQRPDHIKVRAQDRNGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  DG+LA C+QHE+DHL+G LF+D+LS LKR  I KK+ K+ + R
Sbjct: 119 TFEIEDDGMLAVCIQHEIDHLDGKLFVDYLSPLKRQRIRKKLEKIHRQR 167


>gi|188580852|ref|YP_001924297.1| peptide deformylase [Methylobacterium populi BJ001]
 gi|179344350|gb|ACB79762.1| peptide deformylase [Methylobacterium populi BJ001]
          Length = 171

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/167 (50%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S P+  +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLISEPVGTVTEEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID     + KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM  + +
Sbjct: 61  IDTSKDENAKNPTVYLNPEIVWSSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 TVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167


>gi|240849749|ref|YP_002971137.1| polypeptide deformylase [Bartonella grahamii as4aup]
 gi|240266872|gb|ACS50460.1| polypeptide deformylase [Bartonella grahamii as4aup]
          Length = 178

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 86/172 (50%), Positives = 124/172 (72%), Gaps = 2/172 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + LV  PDPILR VS+P+++++S +  L D+MLE MY+  GIGLAA+QIG+  R++V
Sbjct: 1   MPMRSLVTLPDPILREVSKPVDQVDSALQKLADDMLETMYNAKGIGLAAIQIGIPLRMLV 60

Query: 61  IDLQDH--AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+  +    RK P V INP+I+  SD+ ++Y+EGCLSIPDY A+V+R   + VRY +  
Sbjct: 61  IDVSGNSEDERKKPFVIINPEILWLSDERNIYKEGCLSIPDYFAEVERPKRLCVRYQNRE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +   I AD LLATCLQHE+DHL+G LFID++S++KRDM+ +K  K  + ++
Sbjct: 121 GKQTEIEADDLLATCLQHEIDHLDGRLFIDYISKIKRDMVIRKFKKRAKEKN 172


>gi|86137254|ref|ZP_01055832.1| peptide deformylase [Roseobacter sp. MED193]
 gi|85826578|gb|EAQ46775.1| peptide deformylase [Roseobacter sp. MED193]
          Length = 172

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  ++I PDP L+++  P+  ++  +  L D+MLE MY+  GIGLAA QIGV+ RL+V+
Sbjct: 1   MKHSILIHPDPRLKKICAPVADLSDKLRLLADDMLETMYAAPGIGLAAPQIGVMERLIVL 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +        P+V  NP+II+ S++ +VY+EGCLSIPD  A+V R   + V+++D N  
Sbjct: 61  DCEKEEGVEPKPLVMFNPEIISSSEETNVYEEGCLSIPDQYAEVTRPRDVEVQWLDRNGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 QQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|158422422|ref|YP_001523714.1| polypeptide or peptide deformylase family protein [Azorhizobium
           caulinodans ORS 571]
 gi|158329311|dbj|BAF86796.1| polypeptide or peptide deformylase family protein [Azorhizobium
           caulinodans ORS 571]
          Length = 172

 Score =  227 bits (580), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/167 (52%), Positives = 119/167 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++I P+P LR++S P+ +I+ +I  L  +MLE MY   GIGLAA+Q+GV  R++ 
Sbjct: 1   MAILPILIIPEPQLRQISAPVPRIDKEIEKLAADMLETMYDAPGIGLAAIQVGVHKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      KNP+V INP++++ S++ S Y EGCLSIP+Y  +V+R A +TVRY D    
Sbjct: 61  IDIAREDAPKNPIVLINPEVVSASEETSFYNEGCLSIPEYYEEVERPAQVTVRYQDLKGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I ADGLLATCLQHE+DHLNG+LFIDHLSRLKR+ + KK +K  +
Sbjct: 121 THEIAADGLLATCLQHEIDHLNGVLFIDHLSRLKRERVIKKFTKAAR 167


>gi|296114064|ref|YP_003628002.1| peptide deformylase [Moraxella catarrhalis RH4]
 gi|295921758|gb|ADG62109.1| peptide deformylase [Moraxella catarrhalis RH4]
 gi|326559449|gb|EGE09872.1| peptide deformylase [Moraxella catarrhalis 7169]
 gi|326561289|gb|EGE11648.1| peptide deformylase [Moraxella catarrhalis 46P47B1]
 gi|326565177|gb|EGE15368.1| peptide deformylase [Moraxella catarrhalis 103P14B1]
 gi|326566131|gb|EGE16288.1| peptide deformylase [Moraxella catarrhalis BC1]
 gi|326572198|gb|EGE22194.1| peptide deformylase [Moraxella catarrhalis BC7]
 gi|326572807|gb|EGE22792.1| peptide deformylase [Moraxella catarrhalis CO72]
 gi|326574626|gb|EGE24562.1| peptide deformylase [Moraxella catarrhalis 101P30B1]
          Length = 184

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR +++P+   +  +  LI++M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL       +P VFINPK+    D+ S YQEGCLS+P+    ++R + + +  +D + Q
Sbjct: 61  MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+GLLA C+QHE+DHLNG LF+D+LS LK+     K+ K ++ R+
Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170


>gi|209886650|ref|YP_002290507.1| peptide deformylase [Oligotropha carboxidovorans OM5]
 gi|229487488|sp|B6JJP8|DEF_OLICO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|209874846|gb|ACI94642.1| peptide deformylase [Oligotropha carboxidovorans OM5]
          Length = 171

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/168 (50%), Positives = 117/168 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LRRVS P+EKI S++  L ++M E MY   GIGLAA+Q+ V  RL+ 
Sbjct: 1   MAIREIISIPDKRLRRVSEPVEKITSEVRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P VFINP+I++ S+D +VY+EGCLSIP+Y  +V+R A + VR+MD   +
Sbjct: 61  MDLAKKEGESAPRVFINPEILSKSEDIAVYEEGCLSIPEYYEEVERPASVRVRFMDLEGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +L
Sbjct: 121 VHEEDAEGLFATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKL 168


>gi|302186428|ref|ZP_07263101.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
          Length = 168

 Score =  227 bits (579), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLATC+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLATCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|289209433|ref|YP_003461499.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
 gi|288945064|gb|ADC72763.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
          Length = 177

 Score =  227 bits (579), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 74/164 (45%), Positives = 106/164 (64%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ FPDP LR  + P+E ++ +I  L+D+MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAKREILHFPDPRLRLKAEPVETVDDEIRTLVDDMLETMYDAPGIGLAATQINVQKRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D   +  P V INP+I+  S +     EGCLS+P +   V+R+  I VR +  + +
Sbjct: 61  ADVSD--DQSEPHVLINPEILETSGE-EEMDEGCLSVPGFYEKVQRADRIRVRALGRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K
Sbjct: 118 PFELDIDGLLAVCIQHEIDHLDGKLFVDYLSSLKRNRIRKKLEK 161


>gi|255261213|ref|ZP_05340555.1| peptide deformylase [Thalassiobium sp. R2A62]
 gi|255103548|gb|EET46222.1| peptide deformylase [Thalassiobium sp. R2A62]
          Length = 173

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L++ +  + + +  +  L D+ML+ MY   GIGLAA QIGV+ R+ V
Sbjct: 1   MSIRPILIHPDPRLKKRADEVTEFDDALCVLGDDMLDTMYDAPGIGLAAPQIGVMSRVFV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  ++      PMV +NP+I   SD+ + Y EGCLSIP+  A+V R A + V + D   
Sbjct: 61  MDCVKEEGEEPKPMVLVNPEITWTSDEMNTYDEGCLSIPEQYAEVDRPAEVKVTWQDVEG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 TQYEAQFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRE 169


>gi|326567834|gb|EGE17938.1| peptide deformylase [Moraxella catarrhalis 12P80B1]
 gi|326568164|gb|EGE18246.1| peptide deformylase [Moraxella catarrhalis BC8]
 gi|326573749|gb|EGE23707.1| peptide deformylase [Moraxella catarrhalis O35E]
          Length = 184

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR +++P+   +  +  LI++M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL       +P VFINPK+    D+ S YQEGCLS+P+    ++R + + +  +D + Q
Sbjct: 61  MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+GLLA C+QHE+DHLNG LF+D+LS LK+     K+ K ++ R+
Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170


>gi|66043290|ref|YP_233131.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
 gi|63253997|gb|AAY35093.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae
           B728a]
 gi|330957385|gb|EGH57645.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
           ES4326]
 gi|330970343|gb|EGH70409.1| peptide deformylase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 168

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|77464452|ref|YP_353956.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|126463292|ref|YP_001044406.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|221640344|ref|YP_002526606.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|332559341|ref|ZP_08413663.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
 gi|77388870|gb|ABA80055.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|126104956|gb|ABN77634.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|221161125|gb|ACM02105.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|332277053|gb|EGJ22368.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
          Length = 177

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 114/169 (67%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P++I PDP L+++  P+ +I  D+  L D+ML  MY   GIGLAA Q+GV+ RL+V+
Sbjct: 1   MIRPILIHPDPRLKKICDPVGQITDDLRRLADDMLATMYDAPGIGLAAPQVGVVRRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++    + P+  +NP+++  S+D S Y+EGCLS+P+  ADV+R A + VR+   + +
Sbjct: 61  DCNKESDGARRPVAMVNPEVVWRSEDVSTYEEGCLSLPNVFADVERPAEVKVRWTGLDGR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +     GL ATC+QHE+DHL+G LFID+L  LKR MIT+KM K  + +
Sbjct: 121 EEEEQFAGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKFKRAQ 169


>gi|259417507|ref|ZP_05741426.1| peptide deformylase [Silicibacter sp. TrichCH4B]
 gi|259346413|gb|EEW58227.1| peptide deformylase [Silicibacter sp. TrichCH4B]
          Length = 174

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++++  +  ++ ++  L D+MLE MY+  GIGLAA QIG+L RL+V+
Sbjct: 1   MKRSILIHPDPRLKKIAADVPDLSDELRALADDMLETMYAAPGIGLAAPQIGILDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP++I  SD+ +VY+EGCLSIP+  A+V R   + V ++D +  
Sbjct: 61  DCVKEGEGEARPLVMFNPRVIAASDETNVYEEGCLSIPEQYAEVTRPKVVDVEWLDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|71737781|ref|YP_272335.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558334|gb|AAZ37545.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326682|gb|EFW82727.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331344|gb|EFW87287.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 168

 Score =  226 bits (578), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D N +
Sbjct: 61  MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRNGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|255319595|ref|ZP_05360807.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262380781|ref|ZP_06073934.1| peptide deformylase [Acinetobacter radioresistens SH164]
 gi|255303350|gb|EET82555.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262297729|gb|EEY85645.1| peptide deformylase [Acinetobacter radioresistens SH164]
          Length = 176

 Score =  226 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTLAKPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++    
Sbjct: 61  MDLSE--EKNQPMVFINPKITPLTEDTQPYEEGCLSVPQIYDKVERPSRVKIEALNLEGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ KLV+ R
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRSR 167


>gi|146276205|ref|YP_001166364.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554446|gb|ABP69059.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 177

 Score =  226 bits (577), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 111/169 (65%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++I PDP L+++  P+ +I  D+  L D+ML  MY   GIGLAA Q+GV+ RLVV+
Sbjct: 1   MIRSILIHPDPRLKKICDPVAEITDDLRRLADDMLATMYDAPGIGLAAPQVGVMRRLVVM 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D        + P+  INP+++  S+D S Y+EGCLS+P+  A+V+R A + VR+   + +
Sbjct: 61  DCNKQPEAPRRPIAMINPQVVWASEDLSTYEEGCLSLPNVFAEVERPAEVKVRWTGIDGR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +     GL ATC+QHE+DHL+G LFID+L  LKR MIT+KM K  + +
Sbjct: 121 EEEEQFSGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKFRRAQ 169


>gi|126733797|ref|ZP_01749544.1| Peptide deformylase [Roseobacter sp. CCS2]
 gi|126716663|gb|EBA13527.1| Peptide deformylase [Roseobacter sp. CCS2]
          Length = 173

 Score =  226 bits (577), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PDP L++V+ P+  +N D+  L D+MLE MY   GIGLAA QI V+ R++V
Sbjct: 1   MALRNILIHPDPRLKKVATPVPSVNDDLRRLADDMLETMYDAPGIGLAAPQIAVMNRMLV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  ++      PMV INP+++  S++ +VY+EGCLSIP+  A+V+R   + V + + + 
Sbjct: 61  MDCAKEDDATPEPMVLINPEVVWTSEEQNVYEEGCLSIPEQYAEVERPTEVEVTWTNLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q +    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 QAKRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRE 169


>gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
          Length = 167

 Score =  226 bits (577), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV+
Sbjct: 1   AILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +   +  P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +   
Sbjct: 61  DLSE--DKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNP 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 FEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 166


>gi|319403561|emb|CBI77143.1| polypeptide deformylase [Bartonella rochalimae ATCC BAA-1498]
          Length = 176

 Score =  226 bits (577), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 91/170 (53%), Positives = 122/170 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LVI PDPILR VS+ +E+I+  I  L D+MLE MY+  GIGLAAVQ+GV  R++V
Sbjct: 1   MSIKSLVILPDPILREVSKLVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KNP+V INP+I+  SD+ SVY+EGCLSIPDY A+V+R   + + Y D   +
Sbjct: 61  VDIHSKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLRMCYRDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K  ++++
Sbjct: 121 QVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170


>gi|257485584|ref|ZP_05639625.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289627009|ref|ZP_06459963.1| peptide deformylase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647926|ref|ZP_06479269.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867901|gb|EGH02610.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330890232|gb|EGH22893.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
 gi|330985723|gb|EGH83826.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331011873|gb|EGH91929.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 168

 Score =  226 bits (577), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|332185304|ref|ZP_08387053.1| peptide deformylase [Sphingomonas sp. S17]
 gi|332015028|gb|EGI57084.1| peptide deformylase [Sphingomonas sp. S17]
          Length = 173

 Score =  226 bits (577), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 121/173 (69%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PDP LR VS+P+E ++  +  L+ +M+E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAILPIVEVPDPRLRLVSKPVEAVDDSVRQLVTDMIETMYDAHGIGLAAIQVGVDKRVLV 60

Query: 61  IDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           IDLQ+         KNP  +INP+I++ S++ S Y EGCLSIP+  A+VKR A   V+++
Sbjct: 61  IDLQEEEDEEGKPVKNPKAYINPEILSVSEELSTYNEGCLSIPEQYAEVKRPARCQVKWL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D   +      DGLLATC+QHE+DHLNG+LFIDH+SRLKRDM+ +K+SK+ + 
Sbjct: 121 DEKGEAHEAEFDGLLATCMQHEMDHLNGVLFIDHVSRLKRDMLMRKLSKIRKG 173


>gi|312958120|ref|ZP_07772643.1| peptide deformylase [Pseudomonas fluorescens WH6]
 gi|311287551|gb|EFQ66109.1| peptide deformylase [Pseudomonas fluorescens WH6]
          Length = 212

 Score =  226 bits (577), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  +  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 45  MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 104

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P V+INP+    +D+   YQEGCLS+P++  +V+R   + ++ +D + +
Sbjct: 105 MDLSE--DRSEPRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGK 162

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 163 PFEMIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKKHRQQ 211


>gi|87200909|ref|YP_498166.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444]
 gi|123763380|sp|Q2G491|DEF_NOVAD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|87136590|gb|ABD27332.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444]
          Length = 188

 Score =  226 bits (576), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 85/186 (45%), Positives = 121/186 (65%), Gaps = 19/186 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L++VS P+EK + ++  L+++M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREIIEVPDPRLKQVSVPVEKFDDELKTLVEDMFETMYDAPGIGLAAIQVGVPLRVLV 60

Query: 61  IDLQDHAH-------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           IDLQ                       +K P VFINP+I+  S+++SVYQEGCLS+P+  
Sbjct: 61  IDLQPDDPDAEPVACDHDGHHHHHQPTKKEPRVFINPEILDPSEEYSVYQEGCLSVPEIY 120

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           A+V+R A I  R+ D + +      +GL+ATCLQHE+DHL G+LFIDHLSRLKR+M  KK
Sbjct: 121 AEVERPATIRARWQDLDGKVHEEQMEGLMATCLQHEMDHLEGVLFIDHLSRLKRNMALKK 180

Query: 162 MSKLVQ 167
           + KL +
Sbjct: 181 LEKLRK 186


>gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213968425|ref|ZP_03396568.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
 gi|301384287|ref|ZP_07232705.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
 gi|302060151|ref|ZP_07251692.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
 gi|302130424|ref|ZP_07256414.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|32363153|sp|Q88B43|DEF1_PSESM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213926713|gb|EEB60265.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
 gi|331017687|gb|EGH97743.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 168

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTLAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSE--DRSAPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|298484627|ref|ZP_07002731.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160851|gb|EFI01868.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 168

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSE--DRSEPRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|304320578|ref|YP_003854221.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
 gi|303299480|gb|ADM09079.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
          Length = 170

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/164 (49%), Positives = 115/164 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V  PDP LR +S P++ ++ ++  L+D+MLE MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MTIRPIVTAPDPRLREISTPVDGVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  F+NP I   + D + YQEGCLS+PDY  +++R A  TV Y+D +  
Sbjct: 61  MDLAGEGEPPAPRYFVNPVIRNPATDLAPYQEGCLSVPDYYEEIERPATCTVDYLDYDGT 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + + A+GLLATC+QHE+DHL G+LFIDHLSRLKR+ I KK+ +
Sbjct: 121 PRTLEAEGLLATCIQHEMDHLEGVLFIDHLSRLKRERILKKLKR 164


>gi|121602173|ref|YP_989567.1| peptide deformylase [Bartonella bacilliformis KC583]
 gi|158513863|sp|A1UUB4|DEF_BARBK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|120614350|gb|ABM44951.1| peptide deformylase [Bartonella bacilliformis KC583]
          Length = 182

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 123/176 (69%), Gaps = 6/176 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDPILR +S+P+E I+S I  L D+MLE MY+  GIGLAA+Q+G+  R++V
Sbjct: 1   MPIKPLVILPDPILREISKPVEHIDSTIQQLADDMLETMYNAGGIGLAAIQVGIPLRMLV 60

Query: 61  IDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +D+       +    ++P++ INP+I+  SD+ ++  EGCLSIP Y A+V+R   + +RY
Sbjct: 61  VDVSIFTSIFEPDAPQDPIIVINPEILWLSDERNICMEGCLSIPGYSAEVERPKRLCIRY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +   + + I AD +LATCLQHE+DHLNG LFIDHLS++KR+M+ +K  K  +  +
Sbjct: 121 RNREGEQKEIEADNILATCLQHEIDHLNGCLFIDHLSKVKRNMVIRKFEKRAKENN 176


>gi|99082420|ref|YP_614574.1| peptide deformylase [Ruegeria sp. TM1040]
 gi|99038700|gb|ABF65312.1| peptide deformylase [Ruegeria sp. TM1040]
          Length = 174

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++++  +  ++ D+  L D+MLE MY+  GIGLAA QIGVL RL+V+
Sbjct: 1   MKRSILIHPDPRLKKIATDVPDLSDDLRALADDMLETMYAAPGIGLAAPQIGVLDRLIVM 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP++I  SD+ +VY+EGCLSIP+  A+V R   + V +MD +  
Sbjct: 61  DCVKEGEGDARPLVMFNPRVIASSDETNVYEEGCLSIPEQYAEVTRPKVVDVEWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|167950832|ref|ZP_02537906.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 194

 Score =  225 bits (575), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P+ +++  I  L+D+M E MY   GIGLAA Q+ V  +++V
Sbjct: 19  MAILDILHFPDSRLRNKAKPVSQVDDAIRKLVDDMFETMYEAPGIGLAATQVNVAKQIIV 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   +  P+  INP+I++   +     EGCLS+P     VKR+A I+VR +D +  
Sbjct: 79  IDLSE--EKNQPLCLINPEILSKEGE-EKMDEGCLSVPGIYESVKRAARISVRALDRDGA 135

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE+DHLNG LF+D+LS LKR  I K++ K  +LR
Sbjct: 136 PFELETEGLLAVCIQHEIDHLNGKLFVDYLSSLKRQRIRKRLEKESRLR 184


>gi|89052957|ref|YP_508408.1| peptide deformylase [Jannaschia sp. CCS1]
 gi|88862506|gb|ABD53383.1| peptide deformylase [Jannaschia sp. CCS1]
          Length = 174

 Score =  225 bits (575), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++I PDP L++V+ P+  +  ++  L DNML  MY   GIGLAA Q+GV  RL+V+
Sbjct: 1   MKLPILIHPDPRLKKVAAPVPDVTDELRALADNMLSTMYDAPGIGLAAPQVGVGQRLIVL 60

Query: 62  DLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +        P+   NP++I  SD+ + Y EGCLSIPD  ADV R   +TVR+MD N  
Sbjct: 61  DCEKGDDVTPRPLAMFNPEVIASSDEMNTYDEGCLSIPDIYADVTRPEAVTVRWMDVNGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL G LFID+LS LKR +IT+KM KL + R
Sbjct: 121 EQEETFDGLWATCVQHEIDHLEGKLFIDYLSGLKRQLITRKMVKLKRDR 169


>gi|103485746|ref|YP_615307.1| peptide deformylase [Sphingopyxis alaskensis RB2256]
 gi|98975823|gb|ABF51974.1| peptide deformylase [Sphingopyxis alaskensis RB2256]
          Length = 180

 Score =  225 bits (575), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/175 (49%), Positives = 118/175 (67%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR +S+P+E  ++++  L+ +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 4   MAILPIIETPDPRLRVISKPVETFDAELKQLVADMFETMYDAPGIGLAAIQVGVPKRILV 63

Query: 61  IDLQDHAHR--------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           IDLQ+            + P VFINP    FSD+ SVYQEGCLS+P+  ADV R A +TV
Sbjct: 64  IDLQEADPEDPEGKKVIRTPRVFINPVFSDFSDEHSVYQEGCLSVPEQYADVTRPAEVTV 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + D + +H      GL+ATC+QHE DHL GILFIDHLSRLKR+M+ KK++KL +
Sbjct: 124 DWQDEDGKHHQERMTGLMATCIQHEHDHLEGILFIDHLSRLKREMVLKKLAKLRK 178


>gi|88705378|ref|ZP_01103089.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
 gi|88700468|gb|EAQ97576.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
          Length = 168

 Score =  225 bits (575), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++P+E ++ D+  LIDNM+E MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MAVLDILEFPDPRLRTVAKPVESVDDDLRALIDNMIETMYEASGIGLAATQVNVHKRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +  +R  PMVFINP++    D    Y EGCLS+P +  +V R   + V  +  + +
Sbjct: 61  LDISE--NRDQPMVFINPEVTVLDDTLGSYDEGCLSVPGFYEEVNRPRKVRVEALGRDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGL A CLQHE+DHL+G LF+D++S LKR+ I  K+ K  +LR
Sbjct: 119 SFSQELDGLAAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167


>gi|330901114|gb|EGH32533.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330937252|gb|EGH41267.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330976422|gb|EGH76478.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 168

 Score =  225 bits (575), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  PMV INP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSE--DRSEPMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|330876380|gb|EGH10529.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965122|gb|EGH65382.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 168

 Score =  225 bits (575), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|260752714|ref|YP_003225607.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552077|gb|ACV75023.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 177

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/174 (48%), Positives = 116/174 (66%), Gaps = 4/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR  S  +E  + ++  LID+M E MY   GIGLAA+Q+GV  RL+V
Sbjct: 1   MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60

Query: 61  IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           IDL    +D   ++NPMVFINP++    ++  +Y EGCLS+PD  A+V+R + I  ++ D
Sbjct: 61  IDLQQPEEDGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +        +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K  +LR+
Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174


>gi|23016537|ref|ZP_00056292.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 170

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 117/170 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+L+  S+P+  ++  I  L+ +MLE MY   GIGLAA QIGVL R++V
Sbjct: 1   MAVLPILTAPDPVLKSKSKPVAAVDDRIRALLADMLETMYHAPGIGLAAPQIGVLERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      + P+  +NP+II  SD+ + Y+EGCLS+P++ ++V R A + VRY+D    
Sbjct: 61  MDIGRKEEDRAPIRMVNPEIIWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q + A+GLLAT +QHE+DHL+G+LFIDHLS LKR+MI +K+ K  +  +
Sbjct: 121 KQELLAEGLLATVVQHEMDHLDGVLFIDHLSSLKRNMILRKLLKARKEAE 170


>gi|331007625|ref|ZP_08330767.1| Peptide deformylase [gamma proteobacterium IMCC1989]
 gi|330418565|gb|EGG93089.1| Peptide deformylase [gamma proteobacterium IMCC1989]
          Length = 166

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 104/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ FPD  LR V++P+ ++      +ID+M E MY+  GIGLAA Q+ +  +++V
Sbjct: 1   MAQLPILEFPDARLRTVAKPVAEVTDATRRIIDDMFETMYAAPGIGLAATQVNIHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  P VFINP I    ++   Y EGCLS+P +   V+R   I V  +D N  
Sbjct: 61  MDLSE--DKSEPQVFINPSITVQGEELDSYDEGCLSVPGFYESVERPKSIKVEAIDRNGS 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             II  +GLLA C+QHE+DHLNG LF+D+LS +KR  I KK+ K  + 
Sbjct: 119 PFIIEPEGLLAVCIQHEIDHLNGKLFVDYLSNMKRQRIRKKLEKQQRG 166


>gi|94495737|ref|ZP_01302317.1| polypeptide deformylase [Sphingomonas sp. SKA58]
 gi|94425125|gb|EAT10146.1| polypeptide deformylase [Sphingomonas sp. SKA58]
          Length = 176

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP LR +S  ++ I+ D+  LID+M + MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIRPILEAPDPRLRTISTRVDAIDDDLQTLIDDMFDTMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDHA-------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           IDLQ+           KNPMVFINP+I+  SDD SVY EGCLS+PD  A+V+R + I   
Sbjct: 61  IDLQEPESDEEGAPPVKNPMVFINPEILKGSDDLSVYNEGCLSVPDQFAEVERPSVIRAS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +MD   +      +GLLATCLQHE+DHL GILFIDHLSRLKRDM+ KK++K  +
Sbjct: 121 WMDREGRIHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRDMLMKKLNKARR 174


>gi|90019670|ref|YP_525497.1| peptide deformylase [Saccharophagus degradans 2-40]
 gi|123090994|sp|Q21PV5|DEF_SACD2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|89949270|gb|ABD79285.1| peptide deformylase [Saccharophagus degradans 2-40]
          Length = 172

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+ K++  I  LID+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MALLPILEFPDPRLRTIAKPVAKVDQRIRTLIDDMFETMYDAPGIGLAATQVNVHEQVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +    K PMVFINP I     +   Y+EGCLS+P +   V R   I V  +D + +
Sbjct: 61  IDLGE--ETKEPMVFINPSIEILDQEHYEYEEGCLSVPGFYEQVSRPKHIRVTALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             +I  +GLLA C+QHE+DHLNG LF+D++S +KR  I KK+ K  + 
Sbjct: 119 EFVIEPEGLLAVCVQHEMDHLNGKLFVDYVSNIKRQRIRKKLEKQHRQ 166


>gi|254515964|ref|ZP_05128024.1| peptide deformylase [gamma proteobacterium NOR5-3]
 gi|219675686|gb|EED32052.1| peptide deformylase [gamma proteobacterium NOR5-3]
          Length = 168

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++P+E ++  +  LIDNMLE MY+  GIGLAA Q+ V  RL+V
Sbjct: 1   MAVLDILEFPDPRLRTVAKPVEVVDDALRTLIDNMLETMYAASGIGLAATQVNVHQRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +  +R +PM+FINP++    D    Y EGCLS+P +  +V R   I V  +  + +
Sbjct: 61  LDTSE--NRDSPMIFINPQVTILDDTLGSYDEGCLSVPGFYEEVNRPRTIRVEALGRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGL A CLQHE+DHL+G LF+D++S LKR+ I  K+ K  +LR
Sbjct: 119 AFSLELDGLTAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167


>gi|330813514|ref|YP_004357753.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486609|gb|AEA81014.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 170

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 118/170 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PDPILR+ S P++++N +I  L+ NMLE MY+  GIGLAAVQ+G+L R++V
Sbjct: 1   MSILTIVKEPDPILRKKSLPVKEVNGEIKKLMKNMLETMYAAPGIGLAAVQVGILKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+ F+NPKI+  SD     QEGCLSIP +  ++KR     V+Y+D + +
Sbjct: 61  IDISGETSLKKPIFFVNPKIVWKSDILETKQEGCLSIPGHFGNIKRPEACHVKYLDYSGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + + ADGLLATC+QHE+DH NG LFID+LS+LK+  I KK++K  + ++
Sbjct: 121 EKTLKADGLLATCIQHEIDHCNGTLFIDYLSKLKKAFIIKKLTKAQKNQE 170


>gi|56551709|ref|YP_162548.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762296|ref|ZP_04760377.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|81789136|sp|Q9REQ2|DEF_ZYMMO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|6685122|gb|AAF23793.1|AF213822_8 polypeptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543283|gb|AAV89437.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373199|gb|EER62829.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 177

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/174 (48%), Positives = 115/174 (66%), Gaps = 4/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR  S  +E  + ++  LID+M E MY   GIGLAA+Q+GV  RL+V
Sbjct: 1   MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60

Query: 61  IDLQDHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           IDLQ        ++NPMVFINP++    ++  +Y EGCLS+PD  A+V+R + I  ++ D
Sbjct: 61  IDLQQPEEGGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +        +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K  +LR+
Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174


>gi|56698051|ref|YP_168422.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
 gi|56679788|gb|AAV96454.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
          Length = 172

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P+  I+ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRAILIHPDPRLKKVCAPVADISDELRALADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++ +    P+V  NP+++  SD+ ++Y+EGCLSIP+  A+V R   + V ++D + +
Sbjct: 61  DCVKEESAPARPLVMFNPRVVAASDETNIYEEGCLSIPEQYAEVTRPKVVDVEWIDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|262376937|ref|ZP_06070164.1| peptide deformylase [Acinetobacter lwoffii SH145]
 gi|262308282|gb|EEY89418.1| peptide deformylase [Acinetobacter lwoffii SH145]
          Length = 176

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAQPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  ++  PMVFINPKI   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSE--NKDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ KLV+ R+
Sbjct: 119 AFELDADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRQRN 168


>gi|85711005|ref|ZP_01042066.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
 gi|85695409|gb|EAQ33346.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
          Length = 173

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PD  LR V++PIE+++  +   ID+M E MY + G+GLAA Q+ V  RL V
Sbjct: 1   MTKLTVLKYPDERLRTVAQPIEQVDDALRATIDDMFETMYESQGVGLAATQVDVHQRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +  ++  P+VFINP+I T S+     +EGCLS P+  A V+R+  ITV+ +D N +
Sbjct: 61  ADCSE--NQNEPLVFINPEI-TRSEGHFTNEEGCLSFPNVFAKVERAESITVQALDKNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K  +L++
Sbjct: 118 RFSMDAEGLLAICVQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLQE 167


>gi|89092291|ref|ZP_01165245.1| peptide deformylase [Oceanospirillum sp. MED92]
 gi|89083379|gb|EAR62597.1| peptide deformylase [Oceanospirillum sp. MED92]
          Length = 171

 Score =  224 bits (573), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP LR ++ P+ ++  +I   ID+M E MY+  GIGLAA Q+ +  R+V 
Sbjct: 1   MAKLTILEYPDPRLRTIAEPVSEVTDEIRAQIDDMFETMYAAPGIGLAATQVNIHKRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +  P+V INP+     ++   YQEGCLS+P +  DVKR   I ++ +D N +
Sbjct: 61  MDISD--DQNEPLVLINPEFEVIDEELHKYQEGCLSVPGFYEDVKRPQKIKLKALDYNGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A+GLLA C+QHELDHLNG LF+D+LS LKR+ I  K+ K+ + ++
Sbjct: 119 AYELEAEGLLAVCIQHELDHLNGKLFVDYLSMLKRNRIKGKLEKIHKQQE 168


>gi|169797633|ref|YP_001715426.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii AYE]
 gi|184156510|ref|YP_001844849.1| peptide deformylase [Acinetobacter baumannii ACICU]
 gi|213155573|ref|YP_002317618.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|215484987|ref|YP_002327228.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|239503032|ref|ZP_04662342.1| peptide deformylase [Acinetobacter baumannii AB900]
 gi|260557576|ref|ZP_05829790.1| peptide deformylase [Acinetobacter baumannii ATCC 19606]
 gi|301346868|ref|ZP_07227609.1| peptide deformylase [Acinetobacter baumannii AB056]
 gi|301512296|ref|ZP_07237533.1| peptide deformylase [Acinetobacter baumannii AB058]
 gi|301594510|ref|ZP_07239518.1| peptide deformylase [Acinetobacter baumannii AB059]
 gi|332852665|ref|ZP_08434319.1| peptide deformylase [Acinetobacter baumannii 6013150]
 gi|332869381|ref|ZP_08438759.1| peptide deformylase [Acinetobacter baumannii 6013113]
 gi|332875644|ref|ZP_08443456.1| peptide deformylase [Acinetobacter baumannii 6014059]
 gi|169150560|emb|CAM88469.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii AYE]
 gi|183208104|gb|ACC55502.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
 gi|193076056|gb|ABO10651.2| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
           ATCC 17978]
 gi|213054733|gb|ACJ39635.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|213986809|gb|ACJ57108.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|260408749|gb|EEX02053.1| peptide deformylase [Acinetobacter baumannii ATCC 19606]
 gi|322506378|gb|ADX01832.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2]
 gi|323516246|gb|ADX90627.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332729133|gb|EGJ60480.1| peptide deformylase [Acinetobacter baumannii 6013150]
 gi|332732799|gb|EGJ64015.1| peptide deformylase [Acinetobacter baumannii 6013113]
 gi|332736217|gb|EGJ67232.1| peptide deformylase [Acinetobacter baumannii 6014059]
          Length = 176

 Score =  224 bits (573), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSES--KDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKIVRQRE 168


>gi|237801646|ref|ZP_04590107.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024505|gb|EGI04561.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 168

 Score =  224 bits (573), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSE--DRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYEMVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|169632177|ref|YP_001705913.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii SDF]
 gi|238688145|sp|B0VNL8|DEF_ACIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169150969|emb|CAO99588.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii]
          Length = 176

 Score =  224 bits (573), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSES--KDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR  + +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRVREKVEKIVRQRE 168


>gi|262371336|ref|ZP_06064654.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
 gi|262313673|gb|EEY94722.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
          Length = 177

 Score =  224 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR ++ P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAEPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  H+  P+VFINPK+   +++   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  MDLSE--HKDQPLVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ KL + R
Sbjct: 119 AFEIEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLTRQR 167


>gi|84500579|ref|ZP_00998828.1| peptide deformylase [Oceanicola batsensis HTCC2597]
 gi|84391532|gb|EAQ03864.1| peptide deformylase [Oceanicola batsensis HTCC2597]
          Length = 172

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P++I PDP L++V+ P+  I  ++    D+MLE MY   GIGLA  QIG++ RL+V+
Sbjct: 1   MIRPILIHPDPRLKKVAEPVADITDELRTTADDMLETMYDAPGIGLAGPQIGLMARLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+++  SD+ SVY+EGCLSIPD  A+V+R A +TV ++D +  
Sbjct: 61  DCVKEETLPPRPLVMFNPRVVASSDEKSVYEEGCLSIPDQYAEVERPAEVTVEWLDRDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID++S +KR MIT+KM KL + R
Sbjct: 121 LQEESFDGLWATCVQHEIDHLNGKLFIDYISPIKRQMITRKMQKLKRER 169


>gi|149913450|ref|ZP_01901983.1| peptide deformylase [Roseobacter sp. AzwK-3b]
 gi|149812570|gb|EDM72399.1| peptide deformylase [Roseobacter sp. AzwK-3b]
          Length = 174

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V  P+  ++ D+  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKVCAPLGDLSDDLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVM 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  +       P+V  NP+I+  SD  +VY+EGCLSIP+  A+VKR   + VR++D +  
Sbjct: 61  DCVKGENETPRPLVMFNPEIVASSDVMNVYEEGCLSIPEEYAEVKRPEAVDVRWIDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID+L  +KR MIT++M KL + +
Sbjct: 121 EQTETFDGLWATCVQHEIDHLNGKLFIDYLGPMKRQMITRRMQKLKREQ 169


>gi|296284446|ref|ZP_06862444.1| peptide deformylase [Citromicrobium bathyomarinum JL354]
          Length = 190

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 87/186 (46%), Positives = 119/186 (63%), Gaps = 21/186 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS+P+E  + + D+  L+D+M E MY+ +GIGLAA+Q+GV  R+
Sbjct: 1   MAIREILEVPDPRLKTVSQPVEAGEFDDDLRTLVDDMFETMYAANGIGLAAIQVGVPKRI 60

Query: 59  VVIDLQDHAH-------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           +VIDLQ                       +K P VFINP+I+  +++ + YQEGCLS+PD
Sbjct: 61  LVIDLQPEDPDAEPIECDHDGHKHTHPATKKEPRVFINPEILDPNEELATYQEGCLSVPD 120

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             ADV R A  TVR+ D + +      +GLLATC+QHE+DHL GILFIDHLSRLKR M  
Sbjct: 121 IYADVDRPATCTVRWKDLDGKEHTEAMEGLLATCIQHEMDHLEGILFIDHLSRLKRQMAL 180

Query: 160 KKMSKL 165
           KK+ KL
Sbjct: 181 KKLKKL 186


>gi|149925345|ref|ZP_01913609.1| peptide deformylase [Limnobacter sp. MED105]
 gi|149825462|gb|EDM84670.1| peptide deformylase [Limnobacter sp. MED105]
          Length = 169

 Score =  224 bits (571), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 104/169 (61%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L+ V+ P+ + +  ++ L  +M E MY   G+GLAA Q+ V  R++V
Sbjct: 1   MALLPILRYPDPRLKTVATPVTQFDDALVKLTQDMAETMYDAPGVGLAATQVNVHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +    VFINP+II  S +  VY+EGCLS+P     V+R   + VR  +   +
Sbjct: 61  IDVTD--DKSGLTVFINPEIIDASKECKVYEEGCLSVPGIYEKVERPDTVKVRAQNVKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  D LLA C+QHE+DHLNG +F+++LS+LK+  I  KM K  +L+
Sbjct: 119 WFEIDCDELLAVCIQHEIDHLNGKVFVEYLSQLKQTRIKTKMKKQDKLQ 167


>gi|262281295|ref|ZP_06059076.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
 gi|262257121|gb|EEY75858.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
          Length = 176

 Score =  224 bits (571), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   +  P+VFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  IDLSEA--KDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|13474065|ref|NP_105633.1| peptide deformylase [Mesorhizobium loti MAFF303099]
 gi|23396550|sp|Q98D52|DEF_RHILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|14024817|dbj|BAB51419.1| N-formylmethionylaminoacyl-tRNA deformylase [Mesorhizobium loti
           MAFF303099]
          Length = 176

 Score =  223 bits (570), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 121/158 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   R++V
Sbjct: 1   MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P VFINP+I+  ++  SVY+EGCLSIPDY A+V+R A + V+Y+D + +
Sbjct: 61  IDLAKEDETPAPHVFINPEILESAEARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+
Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMV 158


>gi|299771931|ref|YP_003733957.1| peptide deformylase [Acinetobacter sp. DR1]
 gi|298702019|gb|ADI92584.1| peptide deformylase [Acinetobacter sp. DR1]
          Length = 176

 Score =  223 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   +  P+VFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  IDLSEA--KDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|222147432|ref|YP_002548389.1| peptide deformylase [Agrobacterium vitis S4]
 gi|221734422|gb|ACM35385.1| peptide deformylase [Agrobacterium vitis S4]
          Length = 176

 Score =  223 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 97/158 (61%), Positives = 123/158 (77%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++I PDP+LR VS+PIE+I++D+  LID+MLE MY   GIGLAAVQI V  RL+V
Sbjct: 5   MTTKPIIILPDPLLREVSQPIERIDADLERLIDDMLETMYDAPGIGLAAVQIAVPRRLLV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+II  S   S Y+EGCLSIPDY A+V+R A +TV+ +D + +
Sbjct: 65  IDVSKEGEDKQPLVFINPEIIGSSQARSTYEEGCLSIPDYYAEVERPAAVTVKSLDRHGK 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Q+I ADGLLATCLQHE+DHLNG LFIDH+SRLKR+M+
Sbjct: 125 EQVIEADGLLATCLQHEIDHLNGTLFIDHISRLKREMV 162


>gi|114766694|ref|ZP_01445633.1| peptide deformylase [Pelagibaca bermudensis HTCC2601]
 gi|114541084|gb|EAU44139.1| peptide deformylase [Roseovarius sp. HTCC2601]
          Length = 173

 Score =  223 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 114/170 (67%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++   P+  ++  +  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKACAPVPDLSDKLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60

Query: 62  DLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    D      P+V  NP+++  SD+ +VY+EGCLSIPD  A+V+R   + V ++D + 
Sbjct: 61  DCAKADDGEAPRPLVMFNPQVVASSDERNVYEEGCLSIPDQYAEVERPKVVDVEWLDRDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 TLQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRDR 170


>gi|323142780|ref|ZP_08077493.1| peptide deformylase [Succinatimonas hippei YIT 12066]
 gi|322417425|gb|EFY08046.1| peptide deformylase [Succinatimonas hippei YIT 12066]
          Length = 175

 Score =  223 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 3/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V FPD  LR++  P+ + ++ +  L D+M E MY  +GIGLAA QIG+  R+VV
Sbjct: 1   MAIREIVTFPDERLRQICAPVTEFDAALKELTDDMFETMYDDEGIGLAAPQIGIEKRIVV 60

Query: 61  IDLQDHAHR--KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+ +   +  KN +V INPKI     +    +EGCLS+P+YRA++KR   IT+   D N
Sbjct: 61  IDIPEEDGKQGKNKLVLINPKITAKEGE-VASEEGCLSVPEYRAEIKRYEKITLECQDLN 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q QI  ADGLLA C+QHELDHL+G LFID+LSRLKRD +  K  KL + +
Sbjct: 120 GQKQIYEADGLLAICMQHELDHLDGKLFIDYLSRLKRDRLLTKYRKLKKEQ 170


>gi|154247233|ref|YP_001418191.1| peptide deformylase [Xanthobacter autotrophicus Py2]
 gi|154161318|gb|ABS68534.1| peptide deformylase [Xanthobacter autotrophicus Py2]
          Length = 172

 Score =  223 bits (569), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 86/170 (50%), Positives = 123/170 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I P+P LR +S  +EKI+S++  L+++M + MY   GIGLAA+Q+GV  R+V 
Sbjct: 1   MATRPILIIPEPKLRTLSASVEKIDSEVKKLVEDMFDTMYDAPGIGLAAIQVGVQRRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+  INP+II  S++ SVY EGCLSIP+Y  +V+R A +TVR+ D   Q
Sbjct: 61  IDVAREGEAKKPIALINPEIIAASEETSVYAEGCLSIPEYYEEVERPARVTVRFQDIEGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + + ADGL ATC+QHE+DHLNG+LFIDH+S+LKRD + KK +KL + +D
Sbjct: 121 VREVAADGLFATCVQHEIDHLNGVLFIDHISKLKRDRVIKKFTKLARHKD 170


>gi|293611136|ref|ZP_06693434.1| peptide deformylase [Acinetobacter sp. SH024]
 gi|292826387|gb|EFF84754.1| peptide deformylase [Acinetobacter sp. SH024]
 gi|325124152|gb|ADY83675.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2]
          Length = 176

 Score =  223 bits (569), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 113/170 (66%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   + +PMVFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  IDLSES--KDDPMVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFELEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|114770091|ref|ZP_01447629.1| peptide deformylase [alpha proteobacterium HTCC2255]
 gi|114548928|gb|EAU51811.1| peptide deformylase [alpha proteobacterium HTCC2255]
          Length = 172

 Score =  223 bits (569), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 111/168 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+++ PDP L+++  P++ ++++   L D+M+E MY   G+GLAA Q+    R+ V
Sbjct: 1   MSLLPILLHPDPRLKKLCVPVQSVDAETRKLADSMIETMYDAPGVGLAAPQVASDARIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D      P+V INP+II+ S++ + Y EGCLS+PD   DV+R   + + ++D + +
Sbjct: 61  MDCTDSESDNQPLVLINPEIISVSEELNTYSEGCLSLPDLFEDVERPKQVRMSFLDIDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 DGL ATC QHELDHLNG+LFIDHLSR+KR M+TKKM KL + 
Sbjct: 121 QHNELFDGLWATCAQHELDHLNGVLFIDHLSRMKRSMMTKKMVKLKKE 168


>gi|294012439|ref|YP_003545899.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S]
 gi|292675769|dbj|BAI97287.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S]
          Length = 176

 Score =  223 bits (569), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR +S P+E I+ D+  LID+M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAILPILEAPDPRLRTISSPVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDHA-------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           IDLQ+           K PMVFINP+I+  S+D SVY EGCLS+PD  A+V+R A I   
Sbjct: 61  IDLQEPESDEEGAPPVKKPMVFINPEILDGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +MD + +      +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K  +
Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174


>gi|159042735|ref|YP_001531529.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
 gi|157910495|gb|ABV91928.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
          Length = 187

 Score =  223 bits (569), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 106/169 (62%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L++   P+ +I  +I  L D+ML  MY   GIGLA  Q+  + R++ 
Sbjct: 14  MTIRPILIHPDPRLKKTVDPVAEITDEIRQLADDMLATMYDAPGIGLAGPQVAAMTRIIT 73

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D        +PMV INP+I+  S++ + Y+EGCLSIP+  ADV+R A + VR+      
Sbjct: 74  MDCAPKDGEPDPMVLINPEIVWSSEEMNTYEEGCLSIPEMYADVERPAEVEVRWTTLEGG 133

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                  GL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 134 DASARWGGLHATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRER 182


>gi|260461121|ref|ZP_05809370.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
 gi|259033155|gb|EEW34417.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
          Length = 176

 Score =  223 bits (569), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 121/158 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   R++V
Sbjct: 1   MPIKPLIILPDPILRQVSKPVERVDAPLRGLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P VFINP+I+  +D  SVY+EGCLSIPDY A+V+R A + V+Y+D + +
Sbjct: 61  IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+
Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMV 158


>gi|237746966|ref|ZP_04577446.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
 gi|229378317|gb|EEO28408.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
          Length = 183

 Score =  223 bits (568), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L + SRP+   +S++  L++NM + MY   G+GLAA Q+    ++VV
Sbjct: 1   MARLPILRYPDPRLLKPSRPVTSFDSELKTLVENMAQTMYEAPGVGLAAPQVNAHRQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +  +  VFINP+II  S++ ++++EGCLS+P    +++R A +TVR  D + +
Sbjct: 61  IDVSEKRNELH--VFINPQIIKASEEKTLFEEGCLSLPGIYDEIERPARVTVRAQDVDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K  + +
Sbjct: 119 AFEMEAEGLLAVCVQHEIDHLKGRVFVDYLSPMKRNRIKKKLLKEEREQ 167


>gi|163744872|ref|ZP_02152232.1| peptide deformylase [Oceanibulbus indolifex HEL-45]
 gi|161381690|gb|EDQ06099.1| peptide deformylase [Oceanibulbus indolifex HEL-45]
          Length = 172

 Score =  223 bits (568), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P+++ PDP L++ + P+  ++ ++  L D+ML  MY   GIGLAA Q+GVL R++V+
Sbjct: 1   MKRPILLHPDPRLKKAAAPVADLSDELRVLGDDMLATMYDAPGIGLAAPQVGVLSRVIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P++  NP+I+  SDD + Y+EGCLSIP+  ADV R A + VR++D + +
Sbjct: 61  DCVKEEGEAPRPLLMFNPEIVASSDDLNTYEEGCLSIPEQFADVTRPAEVEVRWLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 EQREGFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRE 168


>gi|288959246|ref|YP_003449587.1| peptide deformylase [Azospirillum sp. B510]
 gi|288911554|dbj|BAI73043.1| peptide deformylase [Azospirillum sp. B510]
          Length = 170

 Score =  223 bits (568), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 123/167 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P+++ P PIL+R ++P+ ++++ ++ L+D+M+E MY   GIGLAA Q+GVL R++V
Sbjct: 1   MARLPILVAPHPILKRKAQPVAEVDARVVKLMDDMVETMYDAAGIGLAAPQVGVLDRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +     NP+   NP+II  S+D +V +EGCLS+P+  A+V R   + VRY+D   Q
Sbjct: 61  VDVHEKGEPPNPIRLANPEIIWSSEDKAVCEEGCLSVPEQYAEVTRPQRVRVRYLDERNQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q I A+G+LATCLQHE+DHLNG+LF+D+LS LKR+++ KK+ K+ +
Sbjct: 121 PQEIEAEGMLATCLQHEIDHLNGVLFVDYLSMLKRNILLKKVQKMQK 167


>gi|262374668|ref|ZP_06067941.1| peptide deformylase [Acinetobacter junii SH205]
 gi|262310458|gb|EEY91549.1| peptide deformylase [Acinetobacter junii SH205]
          Length = 176

 Score =  223 bits (568), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  DI  L  +MLE MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDDIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   + +   Y+EGCLS+P     V+R + + +  ++ + Q
Sbjct: 61  MDLSE--EKNQPMVFINPKVTPLTQETQPYEEGCLSVPQIYDKVERPSRVKIEAINLDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|163795436|ref|ZP_02189403.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
 gi|159179422|gb|EDP63953.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
          Length = 175

 Score =  223 bits (568), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 108/156 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+L+   R ++ ++ ++  LID+M + MY   G+GLAA Q+GV  R++V
Sbjct: 1   MAILPIIWAPDPVLKTKCRSVDVVDDEVRRLIDDMFQTMYFAPGVGLAAPQVGVTKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +  P+  +NP+I+  SD   +Y+EGCLS+P+  ADV+R++ + VRY+D +  
Sbjct: 61  VDVAGKDEKPQPIALVNPEIVWRSDATQIYEEGCLSLPELYADVERASHVKVRYLDRDGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            Q I  +GLLA CLQHE+DH++G+LF+DH+S LKR+
Sbjct: 121 EQKIEGEGLLAVCLQHEIDHIDGVLFVDHISALKRN 156


>gi|120552986|ref|YP_957337.1| peptide deformylase [Marinobacter aquaeolei VT8]
 gi|120322835|gb|ABM17150.1| peptide deformylase [Marinobacter aquaeolei VT8]
          Length = 167

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 2/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP LR +++P+E++  DI  LID+M E MY   GIGLAA Q+ V  +++V+
Sbjct: 1   MIREILEYPDPRLRTIAKPVEEVTDDIRTLIDDMFETMYDARGIGLAATQVDVHKQIIVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +   +  P VFINPK+     +    QEGCLS+P +  DVKR     +   D + + 
Sbjct: 61  DLSE--DKTEPRVFINPKVEVLDGELEAMQEGCLSVPGFYEDVKRIEHCRITAKDRDGKE 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ++ A+GLLA C+QHE+DHLNG LF+D+LS+LKR+ I KK+ KL + 
Sbjct: 119 FVLEAEGLLAVCIQHEMDHLNGKLFVDYLSQLKRNRIRKKLEKLHKQ 165


>gi|260554281|ref|ZP_05826531.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
 gi|260404590|gb|EEW98110.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
          Length = 176

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPKI   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSES--KDEPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHL G LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLKGKLFVDYLSPLKRQRAREKVEKIVRQRE 168


>gi|307294614|ref|ZP_07574456.1| peptide deformylase [Sphingobium chlorophenolicum L-1]
 gi|306879088|gb|EFN10306.1| peptide deformylase [Sphingobium chlorophenolicum L-1]
          Length = 176

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/174 (53%), Positives = 122/174 (70%), Gaps = 7/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR +S P+E I++D+  LID+MLE MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAILPILEAPDPRLRTISSPVEAIDADLQRLIDDMLETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDL-------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           IDL       +D    K PMVFINP+I+  S+D SVY EGCLS+PD  A+V+R A I   
Sbjct: 61  IDLQEPESDEEDAPPVKKPMVFINPEILEGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +MD + +      +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K  +
Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174


>gi|114568993|ref|YP_755673.1| peptide deformylase [Maricaulis maris MCS10]
 gi|122316781|sp|Q0ASK2|DEF_MARMM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114339455|gb|ABI64735.1| peptide deformylase [Maricaulis maris MCS10]
          Length = 174

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 113/170 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDPIL+ VS+P+++++ D+  L+D+ML+ MY+ DGIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILTVPDPILKEVSQPVDQVDDDLRELMDDMLQTMYAADGIGLAAIQVGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  F+NP +   SD    Y+EGCLS+P    +++R   I ++Y+D +  
Sbjct: 61  MDLAGSDEEAKPRYFVNPVLSDPSDTLKPYEEGCLSVPTVYDEIERPDRIHIQYLDYDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+G+ A C+QHE+DHL G+LFID+LSRLKR    +K+ K+ + +D
Sbjct: 121 ECEEIAEGMFAVCIQHEMDHLEGVLFIDYLSRLKRQRAVQKVKKVEKSKD 170


>gi|226952176|ref|ZP_03822640.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
           deformylase) [Acinetobacter sp. ATCC 27244]
 gi|294648885|ref|ZP_06726341.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837014|gb|EEH69397.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
           deformylase) [Acinetobacter sp. ATCC 27244]
 gi|292825276|gb|EFF84023.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
          Length = 176

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   +++   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  MDLSE--EKNQPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|229587596|ref|YP_002869715.1| peptide deformylase [Pseudomonas fluorescens SBW25]
 gi|229359462|emb|CAY46303.1| peptide deformylase [Pseudomonas fluorescens SBW25]
          Length = 168

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  +  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P V+INP+    +D+   YQEGCLS+P++  +V+R   + ++ +D + +
Sbjct: 61  MDLSE--DRSEPRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKKHRQQ 167


>gi|148556945|ref|YP_001264527.1| peptide deformylase [Sphingomonas wittichii RW1]
 gi|166198523|sp|A5VDM3|DEF_SPHWW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148502135|gb|ABQ70389.1| peptide deformylase [Sphingomonas wittichii RW1]
          Length = 177

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 5/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP LR +S P+E ++ ++  LI +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIRLILEAPDPRLRTISTPVEAVDDELRALIADMFETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDHA-----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           IDLQ+         ++P VFINP++   S++ SVY EGCLS+P+  A+V+R A I  R++
Sbjct: 61  IDLQEEEDAEGKPIRHPRVFINPELFDPSEEQSVYNEGCLSVPEQYAEVERPAVIHARWL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D          +GLLATCLQHE+DHL GILFIDHLSRLKR+M+ KK+ K  + R
Sbjct: 121 DEQGAKHEERLEGLLATCLQHEMDHLEGILFIDHLSRLKREMVMKKLEKARRAR 174


>gi|257456003|ref|ZP_05621212.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
 gi|257446592|gb|EEV21626.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
          Length = 176

 Score =  222 bits (566), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +PDP LR +++P+   + ++  LID+M E MY+  GIGLAA Q+    +LVV
Sbjct: 1   MTLRTILNYPDPRLRTLAKPVTHFDDELKTLIDDMFETMYAAKGIGLAATQVDEHIQLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   +D+   Y+EGCLS+P+Y   V R   + +  +D    
Sbjct: 61  MDLSEDGS--QPRVFINPIVTPLADELYSYEEGCLSVPEYYDKVDRPKHVKIEALDAQGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +  A GLLA C+QHE+DHLNG +F+D+LS+LK+D    K+ K+V+ R+
Sbjct: 119 PFVEEAQGLLAVCIQHEIDHLNGKIFVDYLSKLKQDRARDKVRKVVKQRE 168


>gi|254483306|ref|ZP_05096537.1| peptide deformylase [marine gamma proteobacterium HTCC2148]
 gi|214036401|gb|EEB77077.1| peptide deformylase [marine gamma proteobacterium HTCC2148]
          Length = 168

 Score =  222 bits (566), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V+ P+  +      L+D+MLE MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MAVLEILEFPDPRLRTVAAPVNSVTDKHRQLLDDMLETMYAAPGIGLAATQVNVHERILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   + +P+VFINP++     +   Y EGCLS+P Y   V R   I V+ +  + +
Sbjct: 61  IDLSEK--QNDPLVFINPEVEILDKELGEYDEGCLSVPGYYETVNRPQRIAVKALGRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 +GLLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K  + R
Sbjct: 119 PFSSEIEGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEKDQRRR 167


>gi|217977312|ref|YP_002361459.1| peptide deformylase [Methylocella silvestris BL2]
 gi|254767594|sp|B8ENG6|DEF_METSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|217502688|gb|ACK50097.1| peptide deformylase [Methylocella silvestris BL2]
          Length = 196

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/171 (48%), Positives = 120/171 (70%), Gaps = 3/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PD  LR V+RP+  ++S++  L+D+MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MPLRPIIILPDKRLRLVARPVASVDSEVRALMDDMLETMYEAPGIGLAATQIAVDRRVIV 60

Query: 61  IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +D+   +D + + +P+   NP+I+  S++ S Y+EGCLSIP++  +V R   + V Y+D 
Sbjct: 61  LDVAKRRDDSAKADPICLANPEILWASEELSSYEEGCLSIPEFYEEVFRPEKVRVGYLDR 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + + + I ADGLLATCLQHE+DHLNG+LFIDH+SRLKR  I KK  K  +L
Sbjct: 121 DGRRREIEADGLLATCLQHEIDHLNGVLFIDHISRLKRARIIKKFEKAAKL 171


>gi|114321775|ref|YP_743458.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310781|sp|Q0A5B9|DEF_ALHEH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114228169|gb|ABI57968.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 178

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++++PDP LR V+ P+ +++ DI  L D+MLE MY   GIGLAA Q+GV  R+VV
Sbjct: 1   MAILDILVYPDPRLREVAAPVAQVDDDIRRLADDMLETMYDAQGIGLAATQVGVNQRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +    + P+V INP+I+      +  QEGCLSIP +  DV+R+  I  R +D   +
Sbjct: 61  MDLAE-EGARQPLVLINPEILDREGA-ATGQEGCLSIPGFYEDVERAERIRFRALDREGR 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GL+A C+QHE+DHL+G LF+D+LS LKR  I +K+ KLV+ 
Sbjct: 119 PWEQEAEGLMAVCVQHEIDHLDGKLFVDYLSELKRKRIRRKLEKLVRQ 166


>gi|85705033|ref|ZP_01036133.1| peptide deformylase [Roseovarius sp. 217]
 gi|85670355|gb|EAQ25216.1| peptide deformylase [Roseovarius sp. 217]
          Length = 172

 Score =  221 bits (564), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 111/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP LR+V  P+  ++  +  L  +M E MY   GIGLAA Q+GV+ RL+V+
Sbjct: 1   MKRSILIHPDPRLRKVCTPVTDVSDALRKLSQDMFETMYDAPGIGLAAPQVGVMDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  +D      P+  +NP+I  FSD  SVY+EGCLSIPD  ADV R A + VR+MD +  
Sbjct: 61  DCVKDEGATPRPIAMLNPEITAFSDQTSVYEEGCLSIPDQFADVTRPAEVEVRWMDLDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL + 
Sbjct: 121 EHKEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKLKRE 168


>gi|317050727|ref|YP_004111843.1| peptide deformylase [Desulfurispirillum indicum S5]
 gi|316945811|gb|ADU65287.1| peptide deformylase [Desulfurispirillum indicum S5]
          Length = 171

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +PDP+L+++S+P+ + +S +  L+ +M + MY+ +G+GLAA QIG+L R+ V+
Sbjct: 1   MIHPILTYPDPLLKKISQPVTQFDSALQQLVSDMFDTMYNANGVGLAAPQIGILRRICVL 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          P+V INP+I++  +  + ++EGCLS+P Y  ++KR   I V++ D   Q
Sbjct: 61  DPASGKEEEAQPLVLINPQILS-GEGLTTFEEGCLSVPGYYGEIKRYERIQVQFNDLQGQ 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q    DG  A   QHE+DHLNG LFI+HL   +RD+I +K+ K ++ 
Sbjct: 120 EQTAILDGFTAIIAQHEMDHLNGKLFIEHLGSSERDLIRRKIRKAMKE 167


>gi|254487738|ref|ZP_05100943.1| peptide deformylase [Roseobacter sp. GAI101]
 gi|214044607|gb|EEB85245.1| peptide deformylase [Roseobacter sp. GAI101]
          Length = 174

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 111/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ +++ PDP L+++  P+  +  ++  L D+ML  MY   GIGLAA QIGVL RL+V+
Sbjct: 3   MKRNIILHPDPRLKKLCAPVTDMTDELRALADDMLATMYDAPGIGLAAPQIGVLNRLIVM 62

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++   +  P++  NP++I  SD  S Y+EGCLSIPD  ADV R A + VR++D +  
Sbjct: 63  DCVKEEGEKPRPLIMFNPEVIASSDIESTYEEGCLSIPDQFADVTRPAEVDVRWIDRDGN 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                   L ATC+QHE+DHL+G LFID+L  L+R MIT+KM+KL + 
Sbjct: 123 EHTETFSKLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMTKLKRE 170


>gi|163733890|ref|ZP_02141332.1| peptide deformylase [Roseobacter litoralis Och 149]
 gi|161393001|gb|EDQ17328.1| peptide deformylase [Roseobacter litoralis Och 149]
          Length = 175

 Score =  221 bits (563), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 114/168 (67%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ +++ PDP L++++ P+  I+ ++  L D+MLE MY   GIGLAA Q+G+L R+ V+
Sbjct: 4   MKRSIILHPDPRLKKIAAPVADISDELRQLGDDMLETMYDAPGIGLAAPQVGILQRVFVM 63

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP++I  SD+ +VY+EGCLSIP+  ADV R A + +R+MD +  
Sbjct: 64  DCVKEPGETPRPIVMFNPEVIATSDETNVYEEGCLSIPEQFADVTRPADVELRWMDRDGA 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q     GL ATC QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 124 EQTEVFTGLWATCAQHEIDHLDGKLFIDYLRPLKRQMITRKMVKLKRE 171


>gi|256823831|ref|YP_003147794.1| peptide deformylase [Kangiella koreensis DSM 16069]
 gi|256797370|gb|ACV28026.1| peptide deformylase [Kangiella koreensis DSM 16069]
          Length = 175

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P+     ++   ID+M E MY+  GIGLAA Q+ +  +  V
Sbjct: 1   MAILEILEFPDPRLRTKAKPVTDFGDELQQQIDSMFETMYAAPGIGLAATQVNIHKQFFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +  P+VFINP+I+         +EGCLS P   A V+R+  I V+ +D + +
Sbjct: 61  IDVSD--DKSEPLVFINPQIVEKRG-VEEMEEGCLSFPGVYAKVQRANEIVVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +    LLA C+QHE DH+ G LF+D+LS LKR+ I K + K
Sbjct: 118 PFEMDTGELLAVCIQHENDHIEGKLFVDYLSPLKRNRIRKMLEK 161


>gi|83642943|ref|YP_431378.1| peptide deformylase [Hahella chejuensis KCTC 2396]
 gi|123767556|sp|Q2SQX1|DEF_HAHCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|83630986|gb|ABC26953.1| peptide deformylase [Hahella chejuensis KCTC 2396]
          Length = 168

 Score =  220 bits (562), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P++  ++ +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MSKLQILEFPDPRLRTVAKPVQTFDAALGQLIDDMFETMYEAPGIGLAATQVDVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  PMVFINP I     D    QEGCLS+P +   V R   + +R  D N +
Sbjct: 61  IDVSE--DKSEPMVFINPDIEVLDGDPEEMQEGCLSVPGFYESVTRIPHVKIRAQDRNGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLLA CLQHE+DHLNG L++D+LS +KR  I KK+ K  ++R
Sbjct: 119 SYEMEARGLLAVCLQHEVDHLNGKLYVDYLSNVKRTRIRKKLEKQHKMR 167


>gi|39933698|ref|NP_945974.1| peptide deformylase [Rhodopseudomonas palustris CGA009]
 gi|192289055|ref|YP_001989660.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
 gi|81698398|sp|Q6NC51|DEF_RHOPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229487564|sp|B3QCH1|DEF_RHOPT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|39647544|emb|CAE26065.1| putative N-formylmethionylaminoacyl-tRNA deformylase
           [Rhodopseudomonas palustris CGA009]
 gi|192282804|gb|ACE99184.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
          Length = 175

 Score =  220 bits (562), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVTEVTTEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+  ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGDGKSDPRAFINPEIVGASSEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169


>gi|121596335|ref|YP_988231.1| peptide deformylase [Acidovorax sp. JS42]
 gi|222112559|ref|YP_002554823.1| peptide deformylase [Acidovorax ebreus TPSY]
 gi|120608415|gb|ABM44155.1| peptide deformylase [Acidovorax sp. JS42]
 gi|221732003|gb|ACM34823.1| peptide deformylase [Acidovorax ebreus TPSY]
          Length = 170

 Score =  220 bits (562), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 108/170 (63%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  +  ++D+M   MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAQPVTAVDERVRAIVDDMFATMYDAHGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I   S +  V  EGCLS+P     V+RS  + VR +D + Q
Sbjct: 61  IDVSE--ERDTPLVLINPEITWASAEKQVGDEGCLSVPGIYDGVERSTAVHVRALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  +  +
Sbjct: 119 PRVIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQAE 168


>gi|53803080|ref|YP_115237.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
 gi|53756841|gb|AAU91132.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
          Length = 178

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+ + P+E  +  +   +D+M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MTILSILEFPDERLRKKAAPVEVFDDTLRRTVDDMFETMYAAPGVGLAATQVNVHKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  P+  INP+++    +    +EGCLS+P     V R+  + VR  D N +
Sbjct: 61  IDVSE--EKDAPLCLINPELLEKQGN-GEMEEGCLSVPGIFEKVPRAESVRVRAQDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A+GLLA C+QHE+DHL G LF+DHLS LKR M  KK+ K  +LR+
Sbjct: 118 FFEMSAEGLLAVCIQHEMDHLEGKLFLDHLSTLKRQMARKKLQKERRLRE 167


>gi|21233177|ref|NP_639094.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770117|ref|YP_244879.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188993325|ref|YP_001905335.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|39931165|sp|Q8P4F9|DEF2_XANCP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21115026|gb|AAM43006.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575449|gb|AAY50859.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167735085|emb|CAP53297.1| Peptide deformylase [Xanthomonas campestris pv. campestris]
          Length = 170

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 113/170 (66%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E ++     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +   +  P VFINP+I+T   +  VYQEGCLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSE--EKDAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q +  DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++KL +
Sbjct: 118 QGQPQELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKLRK 167


>gi|27383220|ref|NP_774749.1| peptide deformylase [Bradyrhizobium japonicum USDA 110]
 gi|39930882|sp|Q89BN9|DEF_BRAJA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|27356394|dbj|BAC53374.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110]
          Length = 174

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 82/174 (47%), Positives = 116/174 (66%), Gaps = 4/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+PIEK+ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKQLRLVSKPIEKVTTEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60

Query: 61  IDLQDHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL         +  P VFINP++I  S++ SVY+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKRDENGETKPEPRVFINPEVIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + +     A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK  K  +  +
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEKAAKRAE 174


>gi|182677492|ref|YP_001831638.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633375|gb|ACB94149.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 193

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 117/176 (66%), Gaps = 9/176 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP+LRRV  P+  ++S+I  L+D+MLE MY   GIGLAA QI V+ R++V
Sbjct: 1   MALRSIITIPDPLLRRVCDPVADVDSEIRRLMDDMLETMYDAPGIGLAASQIAVMKRVIV 60

Query: 61  IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +D+          +      P+   NP+I+  S++ S Y+EGCLSIPDY  +V R A + 
Sbjct: 61  MDVAKRRKGEDGAEADVAPQPLALANPEILWASEELSTYEEGCLSIPDYYEEVVRPARVR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           V Y+D   Q Q + ADG+LATC+QHE+DHLNG+LFIDH+SRLKR+ I KK SK  +
Sbjct: 121 VGYLDRQGQRQELEADGILATCVQHEIDHLNGVLFIDHISRLKRERIVKKFSKAAK 176


>gi|332531650|ref|ZP_08407547.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
 gi|332039013|gb|EGI75442.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
          Length = 174

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P++ +++ I  LI +M E MY  +GIGLAA QI V  RLVV
Sbjct: 1   MALLPILTYPDPRLHTVAQPVQAVDARIKQLIADMFETMYDMNGIGLAATQINVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P VFINP+I+  S +  + +EGCLS+P     V+R   + VR +D   Q
Sbjct: 61  IDVSE--GRDQPQVFINPEIVWASPETKINEEGCLSVPGIYDGVERHERVHVRALDGEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +++  +GLL+ C+QHE+DHL G +F+++LS LKR+ I  KM KL + 
Sbjct: 119 SRVVECEGLLSICIQHEMDHLMGKVFVEYLSPLKRNRIKTKMQKLQRE 166


>gi|304392301|ref|ZP_07374242.1| peptide deformylase [Ahrensia sp. R2A130]
 gi|303295405|gb|EFL89764.1| peptide deformylase [Ahrensia sp. R2A130]
          Length = 193

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 80/186 (43%), Positives = 123/186 (66%), Gaps = 18/186 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PDPILR  S+ +E+++ ++   +D+M + MY   GIGLAAVQ+G   R+ V
Sbjct: 1   MALLPIVHLPDPILRVRSQEVERVDDELRKFLDDMADTMYDAPGIGLAAVQVGEPRRIFV 60

Query: 61  IDLQDH------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           +D  +                     +++P+  INPKI+TFSD+ S+Y+EGCLSIPDY A
Sbjct: 61  VDCSERAEAEEEAEDDAPIRAEAVEEKRDPIFLINPKIVTFSDEPSMYEEGCLSIPDYYA 120

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +V+R A   + ++D + + Q + ADGLL+TC+QHE+DHL+G LFIDH+S+LK++M+ KK 
Sbjct: 121 EVERPATCRIEFLDRDGKEQSLEADGLLSTCIQHEMDHLDGTLFIDHISKLKKNMVIKKF 180

Query: 163 SKLVQL 168
           +K+ + 
Sbjct: 181 TKIAKQ 186


>gi|197103839|ref|YP_002129216.1| polypeptide deformylase [Phenylobacterium zucineum HLK1]
 gi|238690164|sp|B4RDT8|DEF_PHEZH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|196477259|gb|ACG76787.1| polypeptide deformylase [Phenylobacterium zucineum HLK1]
          Length = 169

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 75/156 (48%), Positives = 113/156 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ P P L++VS+P+EK++ ++  L+D+MLE MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MAIREILVVPHPALKQVSQPVEKVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL      K P  F+NP+I+  SDD + Y+EGCLS+P+Y  +V+R A + +RY++   +
Sbjct: 61  MDLAREGEEKQPRYFVNPEILWASDDTAPYEEGCLSVPEYYDEVERPARVKLRYLNYQGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
                A+GL A C+QHE+DHL G+LFIDHLSRLKR+
Sbjct: 121 QVEEDAEGLFAVCIQHEMDHLEGVLFIDHLSRLKRE 156


>gi|108761299|ref|YP_629687.1| peptide deformylase [Myxococcus xanthus DK 1622]
 gi|108465179|gb|ABF90364.1| peptide deformylase [Myxococcus xanthus DK 1622]
          Length = 177

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++I+PDP+L++ ++P+ K++     L+ +M E MYS +G+GLAA QIGVL R++V+
Sbjct: 1   MVREILIWPDPVLKQKAKPVAKVDDSTRTLVKDMFETMYSAEGVGLAAPQIGVLQRVIVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D         P+  INP+II    D   Y EGCLSIP   ADV R+A +TV+++D + Q 
Sbjct: 61  DTTHSQPELKPVAMINPEIIAMEGDT-TYNEGCLSIPGEAADVDRAAVVTVKFLDPDGQE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           Q +  DGLL+  +QHE DHLNG +F+DH+S LKR+ I K+M +L   R+
Sbjct: 120 QTLRCDGLLSIAVQHETDHLNGTVFVDHISSLKREFIRKRMKRLKTSRE 168


>gi|254784305|ref|YP_003071733.1| peptide deformylase [Teredinibacter turnerae T7901]
 gi|259645186|sp|C5BKQ0|DEF_TERTT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|237684580|gb|ACR11844.1| peptide deformylase [Teredinibacter turnerae T7901]
          Length = 168

 Score =  219 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPD  LR V++P+E+++  +  +ID+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MALLPILEFPDARLRTVAKPVEQVDERVRAIIDDMFETMYDAPGIGLAATQVNVHEQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+VFINP+I    +    Y+EGCLS+P +  +V R   + V  ++ + +
Sbjct: 61  IDISE--NHDEPLVFINPRIDVLDETLFDYEEGCLSVPGFYEEVTRPRHVRVTALNRDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             ++  +GLLA C+QHE+DHL G LF+D++S +KR  I KK+ K  + R
Sbjct: 119 EFVLEPEGLLAVCIQHEIDHLKGKLFVDYVSNIKRQRIRKKLEKQHKER 167


>gi|260574964|ref|ZP_05842966.1| peptide deformylase [Rhodobacter sp. SW2]
 gi|259022969|gb|EEW26263.1| peptide deformylase [Rhodobacter sp. SW2]
          Length = 181

 Score =  219 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 111/167 (66%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L+++  P+ KI  +I  L ++MLE MY   GIGLAA Q+GV  +L+V+
Sbjct: 1   MKRTILIHPDPRLKKICEPVPKITVEIGRLAEDMLETMYDAPGIGLAAPQLGVTKQLIVM 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  +D A    PM   NP +   S+D S Y+EGCLS+P+  A+++R + + VR+   +  
Sbjct: 61  DCVKDPALTARPMAMFNPVVTWASEDLSTYEEGCLSLPNQYAEIERPSEVRVRWTGLDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q  +  GL ATC+QHE+DHL+G LFID+L  L+R MIT+KM KL +
Sbjct: 121 EQEEHFTGLWATCVQHEIDHLSGKLFIDYLRPLRRQMITRKMEKLKR 167


>gi|323135726|ref|ZP_08070809.1| peptide deformylase [Methylocystis sp. ATCC 49242]
 gi|322398817|gb|EFY01336.1| peptide deformylase [Methylocystis sp. ATCC 49242]
          Length = 188

 Score =  219 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 87/170 (51%), Positives = 121/170 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR+VS P+E+I+++I  L+D+MLE MY+  GIGLAA+Q+ V  R+VV
Sbjct: 1   MALLPIITLPDPRLRKVSEPVERIDAEIHRLLDDMLETMYAAPGIGLAAIQVAVAKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      ++P+  INP+II  S++ S YQEGCLS+PDY  DVKR A + VR++D + Q
Sbjct: 61  VDIGKTEDERSPLFLINPEIIWASEELSSYQEGCLSVPDYFDDVKRPAMVKVRHLDRHGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q   A GLLAT +QHEL+HL G LFID+LSRLKR+ + KK SK  +  +
Sbjct: 121 TQEFDAVGLLATVVQHELEHLEGGLFIDNLSRLKRERVVKKFSKAARFDE 170


>gi|92114984|ref|YP_574912.1| peptide deformylase [Chromohalobacter salexigens DSM 3043]
 gi|123387341|sp|Q1QTJ5|DEF_CHRSD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91798074|gb|ABE60213.1| peptide deformylase [Chromohalobacter salexigens DSM 3043]
          Length = 170

 Score =  219 bits (559), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 107/167 (64%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPD  LR  + P+E ++ +   L+D+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLTILEFPDERLRTKAAPVETVDDETRKLVDDMLETMYDAQGIGLAATQVDVHRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R  P V INP+     D+    QEGCLSIP+Y A+V R+  ++++ +D +  
Sbjct: 61  MDVSD--DRSQPRVLINPEYTPLGDEREPMQEGCLSIPEYYAEVPRALRVSLKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHE DHL G+LF+D+LS LKRD + KKM K  +
Sbjct: 119 PYELEADGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRVLKKMQKRHR 165


>gi|311109268|ref|YP_003982121.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
 gi|310763957|gb|ADP19406.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
          Length = 170

 Score =  219 bits (559), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + ++    +V INP+I   SDD+ +Y+EGCLS+P    DV+R++ I  + +D + +
Sbjct: 61  IDVSEDSN--QLLVLINPEITWHSDDYKIYEEGCLSVPGVYDDVERASRIRCKALDVDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHELDHL G +F+++LS LK++ I  ++ K  + 
Sbjct: 119 PFEFEADGLLAVCVQHELDHLEGKVFVEYLSSLKQNRIKTRLKKAERE 166


>gi|75677243|ref|YP_319664.1| formylmethionine deformylase [Nitrobacter winogradskyi Nb-255]
 gi|74422113|gb|ABA06312.1| peptide deformylase [Nitrobacter winogradskyi Nb-255]
          Length = 187

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/171 (46%), Positives = 112/171 (65%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIE +  +I  L D+M E MY   GIGLA +QI    R+V 
Sbjct: 13  MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIVT 72

Query: 61  IDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL            P VFINP+I++ S++ SVY+EGCLSIP+Y   V+R + + +R+ D
Sbjct: 73  MDLARRDEEGELTPRPRVFINPEILSASEELSVYEEGCLSIPEYYEAVERPSRVRIRFTD 132

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + +     A+GL ATC+QHE+DHLNG+LF+DHLS+LKRD + KK +K  +
Sbjct: 133 LDGKVHEEDAEGLFATCIQHEIDHLNGVLFVDHLSKLKRDRVMKKFTKAAK 183


>gi|317401262|gb|EFV81903.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
          Length = 170

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +V INP+I   SDD+ +Y+EGCLS+P    +V+R++ I  + +D + +
Sbjct: 61  IDVSE--ESNQLLVLINPEITWRSDDYKIYEEGCLSVPGIYDEVERASRIRCKALDIDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHELDHL G +F+++LS LK++ I  K+ K  + 
Sbjct: 119 PFEFDADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKKAERE 166


>gi|254436643|ref|ZP_05050137.1| peptide deformylase [Octadecabacter antarcticus 307]
 gi|198252089|gb|EDY76403.1| peptide deformylase [Octadecabacter antarcticus 307]
          Length = 178

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ PDP L+ V+ P+  ++  +  L D+MLE MY+  GIGLAA Q+G++ R++V
Sbjct: 4   MTLRSILLHPDPRLKSVADPVATVDKTLHALADDMLETMYNAPGIGLAAPQLGIMQRMLV 63

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  +D      PMV INP++I  S D ++Y EGCLSIPD  A+V+R A + V +M+ + 
Sbjct: 64  MDCIKDDMETPQPMVLINPRVIFASSDTNIYDEGCLSIPDQYAEVERPAVVKVEWMNLDG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + Q      L ATC+QHE+DHLNG LFID+L  L+R MIT+KM KL + 
Sbjct: 124 KTQQEEFSDLWATCVQHEIDHLNGKLFIDYLKPLRRQMITRKMQKLKRE 172


>gi|254473716|ref|ZP_05087111.1| peptide deformylase [Pseudovibrio sp. JE062]
 gi|211957102|gb|EEA92307.1| peptide deformylase [Pseudovibrio sp. JE062]
          Length = 175

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/174 (50%), Positives = 114/174 (65%), Gaps = 6/174 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+  LR    PIE IN +I  L D+ML+ MY   GIGLAA QIGV+ R+ V
Sbjct: 1   MTIREIKFVPEACLREKCAPIEDINDEIRTLADDMLQTMYDAPGIGLAASQIGVMKRMFV 60

Query: 61  IDL------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +D+      +D +  K PMVFINP+I   S++ + YQEGCLSIP    DV+R A + V +
Sbjct: 61  LDVAERESEEDDSVEKEPMVFINPEITWSSEEKNTYQEGCLSIPGIYEDVERPAEVRVSF 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           ++   + Q I A GLLATC+QHELDHLNG+LFID+LSRLKRD I KKM K  + 
Sbjct: 121 LNIEGEKQEIEAGGLLATCIQHELDHLNGVLFIDYLSRLKRDRIVKKMIKQQKQ 174


>gi|254456015|ref|ZP_05069444.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083017|gb|EDZ60443.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 172

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/165 (47%), Positives = 117/165 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P+P+LR+VS+P++++  +   L+D+MLE MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MTIKTIITEPNPLLRQVSKPVDQVGKEEQILMDDMLETMYDAPGIGLAAIQVGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I       S Y+EGCLS+P+  A++ R +   V Y+D + +
Sbjct: 61  MDISKEEGKKEPRYFVNPVIKNKDSIKSTYEEGCLSVPNQFAEIDRPSKCEVEYLDYHGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SKL
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKL 165


>gi|330818688|ref|YP_004362393.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
 gi|327371081|gb|AEA62437.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
          Length = 167

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++ ++  I  L+D+M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDVVDDRIRKLVDDMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   +    VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +  + Q
Sbjct: 61  IDTSE--DKNALQVFINPEIVWSSDGKQVYEEGCLSVPGVYDEVERPDHVRVRALGRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK++ I  KM KL +
Sbjct: 119 PFELECEGLLAVCIQHEMDHLMGRVFVQYLSPLKQNRIKSKMKKLER 165


>gi|284006131|emb|CBA71372.1| polypeptide deformylase [Arsenophonus nasoniae]
          Length = 171

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 115/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++K++++I  ++++M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNILHYPDERLRKIAEPVKKVDAEIQRIVNDMFETMYEEEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  + +  +V INP I+  S +  + +EGCLS+P+ RA V R+ ++ ++ +D N +
Sbjct: 61  IDVSESRNER--LVLINPVILETSGETGI-EEGCLSVPEQRAFVPRAKWVKIKALDVNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  D LLA C+QHE+DHLNG LFID+LS LKR  I +K+ KL +L+
Sbjct: 118 EFELETDDLLAICIQHEIDHLNGKLFIDYLSALKRQRIRQKIEKLERLK 166


>gi|154250717|ref|YP_001411541.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
 gi|154154667|gb|ABS61884.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
          Length = 173

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/155 (50%), Positives = 111/155 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS+P+E++++D+  L+D+MLE MY+  GIGLAA+QIGV  +++V
Sbjct: 1   MAIREIITAPDPRLKEVSKPVERVDADLRALMDDMLETMYAAPGIGLAAIQIGVPKQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  FINP+I+  S+D +VY+EGCLS+P++  DV+R A   VRY+D   +
Sbjct: 61  MDLAREGEEPQPRYFINPEILWTSEDVAVYEEGCLSVPEFYEDVERPARCRVRYLDYQGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +    D LLATCLQHE+DHL GILFIDHLSR KR
Sbjct: 121 IREEECDDLLATCLQHEMDHLKGILFIDHLSRTKR 155


>gi|315122858|ref|YP_004063347.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496260|gb|ADR52859.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 165

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 117/167 (70%), Positives = 146/167 (87%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M KK L+ FPDP+LRRVSR +E I+SDI++LI++M EVMYS+DGIGLAAVQIG+LYR+VV
Sbjct: 1   MKKKSLIFFPDPVLRRVSRSVETIDSDIIHLIEDMFEVMYSSDGIGLAAVQIGILYRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL    + K+P+VFINP I++ S+D SV  EGCLSIP++RADVKR++F+TV+Y+D NAQ
Sbjct: 61  IDL----NTKSPLVFINPTIVSSSNDCSVRAEGCLSIPNHRADVKRASFVTVKYLDSNAQ 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            QIIYADGLLATCLQHE+DHLNGILFIDH+SRLKRDMI  K+ KL++
Sbjct: 117 PQIIYADGLLATCLQHEIDHLNGILFIDHISRLKRDMIINKILKLIR 163


>gi|221069823|ref|ZP_03545928.1| peptide deformylase [Comamonas testosteroni KF-1]
 gi|220714846|gb|EED70214.1| peptide deformylase [Comamonas testosteroni KF-1]
          Length = 170

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PM  INP+I+  SD+  + +EGCLS+P     V+RS  + V+ +D N  
Sbjct: 61  IDVSE--ERNEPMALINPEILWASDETQLGEEGCLSVPGIYDGVERSIAVKVKALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166


>gi|289664808|ref|ZP_06486389.1| peptide deformylase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667878|ref|ZP_06488953.1| peptide deformylase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 170

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P++     +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAELTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D   +  P VF+NP+I++   +  +YQEGCLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSD--EKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQPQELHTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|126668176|ref|ZP_01739137.1| peptide deformylase [Marinobacter sp. ELB17]
 gi|126627325|gb|EAZ97961.1| peptide deformylase [Marinobacter sp. ELB17]
          Length = 167

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR +++P+  +  +I  LID+M E MY   GIGLAA Q+ V  ++VV+
Sbjct: 1   MILNILEYPDPRLRTLAKPVTTVTDEIRTLIDDMFETMYDAAGIGLAASQVNVHQQIVVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +      P VFINPKI     D    QEGCLS+P +  +V+R     ++ +D N + 
Sbjct: 61  DLSEDNSE--PKVFINPKIGILDGDLEAMQEGCLSVPGFYEEVERIEHCLIKALDRNGEA 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I A GLLA C+QHE+DHLNG LF+D+LS LKR  I KK+ KL +
Sbjct: 119 FEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLQK 164


>gi|149201578|ref|ZP_01878552.1| peptide deformylase [Roseovarius sp. TM1035]
 gi|149144626|gb|EDM32655.1| peptide deformylase [Roseovarius sp. TM1035]
          Length = 172

 Score =  218 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 114/168 (67%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP LR+V  P++ +   +  L  +MLE MY   GIGLAA Q+GV+ RL+V+
Sbjct: 1   MKRSILIHPDPRLRKVCTPVKDVTDALRKLSQDMLETMYDAPGIGLAAPQVGVMDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  +D      P+V +NP+I  FS++ SVY+EGCLSIPD  ADV R A + +R+MD +  
Sbjct: 61  DCVKDEGATPRPIVMLNPEITAFSEEKSVYEEGCLSIPDQFADVTRPAEVEMRWMDLDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL + 
Sbjct: 121 EHQEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKLKRE 168


>gi|319764921|ref|YP_004128858.1| peptide deformylase [Alicycliphilus denitrificans BC]
 gi|317119482|gb|ADV01971.1| peptide deformylase [Alicycliphilus denitrificans BC]
          Length = 171

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  +  ++D+ML  MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I   S +  + +EGCLS+P     V+RS  +  R +D + Q
Sbjct: 61  IDVSE--ERDQPLVLINPEITWASPETRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + +
Sbjct: 119 PRTIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQQ 167


>gi|254282388|ref|ZP_04957356.1| peptide deformylase [gamma proteobacterium NOR51-B]
 gi|219678591|gb|EED34940.1| peptide deformylase [gamma proteobacterium NOR51-B]
          Length = 168

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 101/169 (59%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR  ++P+ +++  I  LID+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAILPILEFPDPRLRTRAKPVTEVDQRIRRLIDDMLETMYDAPGIGLAASQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R  P VFINP++         Y EGCLS+P +   V R + I V  +D    
Sbjct: 61  IDVSE--NRDEPRVFINPEVTVIDKTLGSYDEGCLSVPGFFETVNRPSSIEVTALDREGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGLLA CLQHE+DHL G LF+D+LS LKR  I  K+ K  + R
Sbjct: 119 TFAEELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRSKLEKEHKRR 167


>gi|83951626|ref|ZP_00960358.1| peptide deformylase [Roseovarius nubinhibens ISM]
 gi|83836632|gb|EAP75929.1| peptide deformylase [Roseovarius nubinhibens ISM]
          Length = 172

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 113/168 (67%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V  P++ I+  +  L D+MLE MY   GIGLA  QIGV+ R++V+
Sbjct: 1   MKRPILIHPDPRLKKVCAPLDDISDAVRALADDMLETMYDAPGIGLAGPQIGVMDRIIVM 60

Query: 62  DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D + D      P+V +NP++I  SD  + Y+EGCLSIPD  A+V R   + VR++  + +
Sbjct: 61  DCEKDEGVDPAPLVMVNPEVIASSDTLNTYEEGCLSIPDQFAEVTRPKEVEVRWLGLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 DGL ATC+QHE+DHL+G LFID+L  +KR +IT+KM KL + 
Sbjct: 121 EHSRGFDGLWATCVQHEIDHLDGKLFIDYLGTMKRQLITRKMVKLKRE 168


>gi|83859278|ref|ZP_00952799.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633]
 gi|83852725|gb|EAP90578.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633]
          Length = 175

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS+P++ ++  +  L+D+M+E MY+ DGIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILTVPDPRLKLVSKPVDAVDDALRALMDDMVETMYAADGIGLAAIQVGVDKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL D   R +P  ++NP I   ++D   YQEGCLS+PD    V+R   + V Y+D + +
Sbjct: 61  MDLSD--ERNDPRYYVNPVITPLTEDLKPYQEGCLSVPDVFDSVERPKKVKVEYLDYDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   A+ L A C+QHE+DHL G++FID+LSRLKRD   KK+ KLV+ R
Sbjct: 119 KREEIAEDLFAVCIQHEMDHLEGVVFIDYLSRLKRDRAVKKVQKLVKQR 167


>gi|119773185|ref|YP_925925.1| peptide deformylase [Shewanella amazonensis SB2B]
 gi|119765685|gb|ABL98255.1| peptide deformylase [Shewanella amazonensis SB2B]
          Length = 167

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 105/167 (62%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+ +    + + ID+M E MY  +GIGLAA Q+    RL+V
Sbjct: 1   MPLLKVLRFPDERLRTVAKPVTEFTPALQSQIDDMFETMYEENGIGLAATQVDFHQRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFINP+I+  S DF   +EGCLS+P   A V R+  ITV+ +D N  
Sbjct: 61  MDLQDEVER--PKVFINPEIVAKSGDF-CNEEGCLSVPGVYAKVDRAELITVKALDRNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGL A CLQHE+DHL G LF+D+LS LKR  I +K+ K  +
Sbjct: 118 EFTVEADGLFAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKAAR 164


>gi|319945035|ref|ZP_08019297.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
 gi|319741605|gb|EFV94030.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
          Length = 170

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 101/169 (59%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V+  +  ++  I  L+ +M E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MAVLDILKYPDARLHTVAERVPVVDDRIRKLVADMAETMYAAPGIGLAATQVNVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I   SD    Y+EGCLSIP     V+R   +TV  +  + +
Sbjct: 61  IDITET--HDQLQVFINPEITWSSDTLQSYEEGCLSIPGIYDKVERPDAVTVTALGLDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHLNG LF  HLSRLK++ I +K+ K+ + R
Sbjct: 119 PFTLEADGLLAVCIQHEIDHLNGKLFTQHLSRLKQNRIRQKVLKMERER 167


>gi|91762408|ref|ZP_01264373.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718210|gb|EAS84860.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 172

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 120/169 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++  P+ +LR++S+P+E +  +   L+D+ML+ MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MSVKPILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I   +D  S Y+EGCLS+PD  A+++R     V Y+D N +
Sbjct: 61  MDISRDEDKKEPRYFVNPLIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+   R
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169


>gi|316932090|ref|YP_004107072.1| peptide deformylase [Rhodopseudomonas palustris DX-1]
 gi|315599804|gb|ADU42339.1| peptide deformylase [Rhodopseudomonas palustris DX-1]
          Length = 175

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTTEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+  ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGDGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVREEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169


>gi|144898454|emb|CAM75318.1| peptide deformylase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 170

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 111/168 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PDP L++ +  +  +++ I  L+D+MLE MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MAVLSILTAPDPRLKQKAAVVADVDASIRTLMDDMLETMYAAPGIGLAAPQVAVGKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+      + P+  +NP+I+  SDD + Y+EGCLS+P++ A V R   I VRY D    
Sbjct: 61  ADIGRSEDDRQPVRMVNPEIVWVSDDDNTYEEGCLSVPEHYAAVVRPRAIRVRYRDETGT 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           HQ I ADGLLAT LQHE+DHL+GILFIDHLS LKR+MI +K+ K  + 
Sbjct: 121 HQEIDADGLLATVLQHEMDHLDGILFIDHLSSLKRNMILRKLLKAKKE 168


>gi|329894842|ref|ZP_08270642.1| Peptide deformylase [gamma proteobacterium IMCC3088]
 gi|328922736|gb|EGG30070.1| Peptide deformylase [gamma proteobacterium IMCC3088]
          Length = 178

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 100/169 (59%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ ++      LI +M E MY   GIGLAA Q+ V  R++V
Sbjct: 11  MALLQILEFPDPRLRTIAKPVAEVTDQHRALIKDMFETMYQAPGIGLAATQVNVHERILV 70

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  P VFINP++     +   Y EGCLS+P +   V R   I VR ++   +
Sbjct: 71  IDVSE--DKSEPRVFINPEVEVLDPELGEYDEGCLSVPGFYDTVCRPQRIKVRALNEQGE 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                  GLLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K  + +
Sbjct: 129 AYEEELGGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEKAHRAK 177


>gi|311696635|gb|ADP99508.1| peptide deformylase [marine bacterium HP15]
          Length = 167

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR +++P+E++      LID+M E MY   GIGLAA Q+ V  +++V+
Sbjct: 1   MILEILEYPDPRLRTIAKPVEEVTDADRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +   +  P VFINP++     +    QEGCLS+P +  DV+R     +R MD + + 
Sbjct: 61  DLSE--DKSEPRVFINPEVEVLDGEREAMQEGCLSVPGFYEDVERIEHCMIRAMDRDGKP 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + A GLLA C+QHE+DHLNG LF+D+LS LKR+ I KK+ K  +
Sbjct: 119 FELEAKGLLAVCIQHEMDHLNGRLFVDYLSSLKRNRIRKKLEKQHK 164


>gi|330827125|ref|YP_004390428.1| peptide deformylase [Alicycliphilus denitrificans K601]
 gi|329312497|gb|AEB86912.1| Peptide deformylase [Alicycliphilus denitrificans K601]
          Length = 171

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  +  ++D+ML  MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I   S +  + +EGCLS+P     V+RS  +  R +D + Q
Sbjct: 61  IDVSE--ERDQPLVLINPEITWASPEMRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + +
Sbjct: 119 PRTIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQQ 167


>gi|126728524|ref|ZP_01744340.1| peptide deformylase [Sagittula stellata E-37]
 gi|126711489|gb|EBA10539.1| peptide deformylase [Sagittula stellata E-37]
          Length = 175

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V   +  ++ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRSIIIHPDPRLKKVCDAVPDLSDELHVLADDMLETMYDAPGIGLAAPQIGVLSRLIVL 60

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    D+     P+V  NP++I  SD+ +VY+EGCLSIP+  A+V+R   + V ++D + 
Sbjct: 61  DCAKSDNGEDARPLVMFNPRVIASSDEQNVYEEGCLSIPEQYAEVERPRVVDVEWLDRDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +    DGL ATC+QHE+DHL+G LFID+L  L+R MIT+KM KL + R
Sbjct: 121 MLRTETFDGLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMVKLKKER 170


>gi|85707836|ref|ZP_01038902.1| polypeptide deformylase [Erythrobacter sp. NAP1]
 gi|85689370|gb|EAQ29373.1| polypeptide deformylase [Erythrobacter sp. NAP1]
          Length = 190

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 88/188 (46%), Positives = 115/188 (61%), Gaps = 21/188 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS P+  ++ N ++  L ++M E MY   GIGLAA+Q+GV  RL
Sbjct: 1   MAIREILEVPDPRLKVVSEPVREDEFNDELKQLAEDMFETMYDAPGIGLAAIQVGVPKRL 60

Query: 59  VVIDLQDHAH-------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
           +VIDLQ                       +K P VF+NP I+  +D+ S Y EGCLS+P+
Sbjct: 61  LVIDLQPDDPDAEPVECEHDGHKHTHPATKKEPRVFVNPVILDPADELSTYNEGCLSVPE 120

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             ADV R A  TV+Y D +  H     +GLLATCLQHE+DHL GILFIDHLSRLKR+M  
Sbjct: 121 IYADVDRPATCTVKYQDLDGNHHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRNMAL 180

Query: 160 KKMSKLVQ 167
           KK+ KL Q
Sbjct: 181 KKLKKLRQ 188


>gi|85713819|ref|ZP_01044809.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
 gi|85699723|gb|EAQ37590.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
          Length = 175

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 81/172 (47%), Positives = 117/172 (68%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIEK+  +I  L D+M E MY   GIGLA +QI    R++ 
Sbjct: 1   MAIREIIILPDKQLRLVSRPIEKVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60

Query: 61  IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL    +D      P +FINP+I++ S++ SVY+EGCLSIP+Y  +V+R A + +R+ D
Sbjct: 61  MDLARRDEDGELNPRPRIFINPEILSASEELSVYEEGCLSIPEYYEEVERPARVRIRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +     A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK +K  +L
Sbjct: 121 LDGKLHEEDAEGLFATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAKL 172


>gi|33591756|ref|NP_879400.1| peptide deformylase [Bordetella pertussis Tohama I]
 gi|33594959|ref|NP_882602.1| peptide deformylase [Bordetella parapertussis 12822]
 gi|33599236|ref|NP_886796.1| peptide deformylase [Bordetella bronchiseptica RB50]
 gi|39931022|sp|Q7VS88|DEF2_BORPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|39931030|sp|Q7W1V3|DEF1_BORPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|39931046|sp|Q7WQS9|DEF1_BORBR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|33565035|emb|CAE39984.1| polypeptide deformylase [Bordetella parapertussis]
 gi|33571399|emb|CAE44880.1| polypeptide deformylase [Bordetella pertussis Tohama I]
 gi|33575282|emb|CAE30745.1| polypeptide deformylase [Bordetella bronchiseptica RB50]
 gi|332381173|gb|AEE66020.1| peptide deformylase [Bordetella pertussis CS]
          Length = 170

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 105/170 (61%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L + ++P+  ++  I  L+ +M + MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +  +  V INP+I   SD+   Y+EGCLS+P    +V+R+A I  + +D   Q
Sbjct: 61  IDVSEEGN--DLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                ADGLLA C+QHE+DHL+G +F+++LS LK++ I  K+ K  +  +
Sbjct: 119 PYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKAEREAE 168


>gi|226327658|ref|ZP_03803176.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198]
 gi|225204184|gb|EEG86538.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198]
          Length = 172

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/170 (50%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   PL+ FPD  LRRV+ P+EK++ +I  LID+M+E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MAVLPLLRFPDERLRRVAVPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R  P+  INP+II+  D+     +GCLSIPD  A  +R  F+ VR +D N  
Sbjct: 61  IDVSE--NRDQPIALINPEIISTEDEVMDMMDGCLSIPDSFAPTERYRFLKVRALDRNGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A  L A C+QHELDHL+G LFIDHLS LKR  I KK  KL +L D
Sbjct: 119 EIELEASDLFAGCIQHELDHLDGKLFIDHLSPLKRQRIEKKQKKLSKLID 168


>gi|264680865|ref|YP_003280775.1| peptide deformylase [Comamonas testosteroni CNB-2]
 gi|262211381|gb|ACY35479.1| peptide deformylase [Comamonas testosteroni CNB-2]
          Length = 170

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PM  INP+I+  S++  + +EGCLS+P     V+RS  + V+ +D N  
Sbjct: 61  IDVSEK--RNEPMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166


>gi|50083493|ref|YP_045003.1| peptide deformylase [Acinetobacter sp. ADP1]
 gi|49529469|emb|CAG67181.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter sp. ADP1]
          Length = 174

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPD  LR +++P+EK+  +I  L  +MLE MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDARLRTIAKPVEKVTDEIRQLAADMLETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPKI   +++   Y+EGCLS+P     V R++ + +  ++ N +
Sbjct: 61  MDLSE--EKDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVNRTSRVKIEAINLNDE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|294625234|ref|ZP_06703874.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666267|ref|ZP_06731518.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600462|gb|EFF44559.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603976|gb|EFF47376.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 170

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 81/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D   R  P VF+NP+I++   +  +YQEGCLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDISD--ERNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|85373243|ref|YP_457305.1| peptide deformylase [Erythrobacter litoralis HTCC2594]
 gi|123409710|sp|Q2NCT3|DEF_ERYLH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|84786326|gb|ABC62508.1| polypeptide deformylase [Erythrobacter litoralis HTCC2594]
          Length = 194

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 86/192 (44%), Positives = 117/192 (60%), Gaps = 25/192 (13%)

Query: 1   MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS P+  ++ N D+  L+D+M E MY+  GIGLAA+Q+GV  R+
Sbjct: 1   MAIREILEVPDPRLKTVSEPVQPDEFNDDLKQLVDDMFETMYAAPGIGLAAIQVGVPKRV 60

Query: 59  VVIDLQDHAH-----------------------RKNPMVFINPKIITFSDDFSVYQEGCL 95
           +VIDLQ+                          + +P +FINP+II  +++ S YQEGCL
Sbjct: 61  LVIDLQEPDMDAEPEECGHDHGDGEGAHKHYPVKNDPRIFINPEIIDPNEELSTYQEGCL 120

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           S+P+  ADV R    TV+Y D   +      DGLLATCLQHE+DHL GILFIDHLSRLK+
Sbjct: 121 SVPEIYADVDRPKTCTVKYQDLTGKTHQEDLDGLLATCLQHEMDHLEGILFIDHLSRLKK 180

Query: 156 DMITKKMSKLVQ 167
            M  KK+ K+ Q
Sbjct: 181 QMALKKLKKMRQ 192


>gi|148258522|ref|YP_001243107.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
 gi|158513291|sp|A5ESQ7|DEF_BRASB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146410695|gb|ABQ39201.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
          Length = 175

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 80/171 (46%), Positives = 117/171 (68%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+P+EK+  +I  L+D+M + MY   GIGLAA+Q+    R++ 
Sbjct: 1   MSLREIIILPDKQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60

Query: 61  IDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL         ++ P VFINP+II  SD+ S+Y+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKPDAGGETKREPRVFINPEIIAKSDELSIYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   +   A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +
Sbjct: 121 LDGVLREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVLKKFTKAAK 171


>gi|225874677|ref|YP_002756136.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
 gi|254767569|sp|C1F541|DEF_ACIC5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225792384|gb|ACO32474.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
          Length = 170

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 108/170 (63%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+ +P+V +PDP+L++ + P+ + N ++  L+D+M E MY   GIGLAA QIG+  RL V
Sbjct: 1   MMIRPIVKYPDPVLQQPAEPVTEFNEELRALVDDMFESMYEAKGIGLAAPQIGISKRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL    +    +V INP+II   +     +EGCLS+PD R  V R+  +TVR  + + +
Sbjct: 61  IDLSFKENPDEKIVLINPEII-HREGRQYEEEGCLSLPDIREKVVRAEKVTVRAQNLDGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +  + LL+   QHE+DHL+G+LFI  +S LKRD++ +++ K+ +  +
Sbjct: 120 WFEMDGEELLSRAFQHEIDHLDGVLFIFRISALKRDLVLRRIRKMQRAGE 169


>gi|71279368|ref|YP_266802.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
 gi|71145108|gb|AAZ25581.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
          Length = 171

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P+  I      +ID+ML  MY  +G+GLAA Q+ +  R+VV
Sbjct: 1   MTILTILRFPDPRLRTKAQPVTDITDATATIIDDMLATMYEENGVGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +      P++FINP+II  S++ S+ +EGCLS+P   A V R    TV+ +D + +
Sbjct: 61  MDTSEDN--DQPIIFINPEIIATSNETSINEEGCLSVPGTYAKVDRHDACTVKALDRHGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + A  L + C+QHELDHL G+LF+D+LS LKR  I KK+ K  +
Sbjct: 119 EFSLNATELQSICIQHELDHLKGVLFVDYLSPLKRQRIQKKLEKEAK 165


>gi|330831510|ref|YP_004394462.1| peptide deformylase 1 [Aeromonas veronii B565]
 gi|328806646|gb|AEB51845.1| Peptide deformylase 1 [Aeromonas veronii B565]
          Length = 170

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E    ++  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAILDVLRFPDERLRTVAAPVETFTPELQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R++P+V INP++I       + +EGCLS+P  RA V R+  I +R +D N +
Sbjct: 61  IDVSE--NREDPLVLINPEVIEQCGSTGI-EEGCLSVPGSRALVPRAEQIKIRALDRNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ + 
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165


>gi|254460256|ref|ZP_05073672.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
 gi|206676845|gb|EDZ41332.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 172

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 112/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  ++I PDP L++V   +  I+  I +  D+MLE MY+  GIGLAA Q+GVL R++V+
Sbjct: 1   MKLKILIHPDPRLKKVCAAVPDISDKIRSFADDMLETMYTAPGIGLAAPQVGVLERMIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++   +  P+V +NP++I  SD+ +VY EGCLSIPD  ADV R   + V ++D +  
Sbjct: 61  DCVKEDGAKPEPLVMVNPRVIAASDETNVYDEGCLSIPDQYADVTRPKEVRVEWLDLDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q    DGL ATC+QHE+DHL G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 LQKRDMDGLWATCVQHEIDHLEGKLFIDYLKPLKRQMITRKMQKLKRE 168


>gi|317049806|ref|YP_004117454.1| peptide deformylase [Pantoea sp. At-9b]
 gi|316951423|gb|ADU70898.1| peptide deformylase [Pantoea sp. At-9b]
          Length = 170

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 110/168 (65%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++ +++ +  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDDRLRKIAAPVKTVDAGVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +    +  +V INP+++    +  + +EGCLSIP+ RA V R+ ++ VR  D +  
Sbjct: 61  IDVSESREER--LVLINPELLEKGGETGI-EEGCLSIPEQRAFVPRAEWVKVRAQDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHE+DHL+G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 SFELETDGLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKQKLEKLARQ 165


>gi|157959861|ref|YP_001499895.1| peptide deformylase [Shewanella pealeana ATCC 700345]
 gi|157844861|gb|ABV85360.1| peptide deformylase [Shewanella pealeana ATCC 700345]
          Length = 199

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++PI + N  +   ID+M E MY   GIGLAA Q+   ++L+V
Sbjct: 30  MSLLKVLRFPDERLRTVAQPITEFNPALQTQIDDMFETMYEEKGIGLAATQVDYHHQLIV 89

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFIN +I   S DF   +EGCLS+P   A V R+ F+T++ +D + +
Sbjct: 90  MDLQDEVER--PKVFINLEITAKSGDF-CNEEGCLSVPGVYAKVDRAEFVTIKALDRDGK 146

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGL A CLQHELDHL+G LF+D+LS LKR  I +K+ K  +L 
Sbjct: 147 EFTLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARLE 195


>gi|284159413|ref|YP_440687.3| peptide deformylase [Burkholderia thailandensis E264]
 gi|83652775|gb|ABC36838.1| peptide deformylase [Burkholderia thailandensis E264]
          Length = 179

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 13  MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 73  IDVSE--DKNELRVFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGE 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 131 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177


>gi|86747799|ref|YP_484295.1| peptide deformylase [Rhodopseudomonas palustris HaA2]
 gi|123099181|sp|Q2J2C6|DEF_RHOP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|86570827|gb|ABD05384.1| peptide deformylase [Rhodopseudomonas palustris HaA2]
          Length = 175

 Score =  216 bits (552), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++  +I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+  ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGNGKSDPRAFINPEIVGASAELNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q +   ADGL ATC+QHE+DHLNG+LF+DH+S+LK+ M+ +K  K  +
Sbjct: 121 GQVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKKAMVVRKFEKAAK 169


>gi|115522683|ref|YP_779594.1| peptide deformylase [Rhodopseudomonas palustris BisA53]
 gi|122297684|sp|Q07TX0|DEF_RHOP5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|115516630|gb|ABJ04614.1| peptide deformylase [Rhodopseudomonas palustris BisA53]
          Length = 180

 Score =  216 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 79/169 (46%), Positives = 111/169 (65%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR  S+P+E ++ ++  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIIVPDKQLRLTSKPVETVSPEVRKLADDMFETMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +DL  ++   +  P  FINP+II  S +  VY+EGCLSIP+Y A+V+R A + +RY D +
Sbjct: 61  MDLVRKEGNGKTEPRAFINPEIIGASTETRVYEEGCLSIPEYYAEVERPAQVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  ADGL ATC+QHE+DHLNG LFIDH+SRLKR ++ +K  K  +
Sbjct: 121 GHVHEEDADGLFATCIQHEIDHLNGTLFIDHISRLKRALVMRKFEKAAK 169


>gi|52842801|ref|YP_096600.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54295432|ref|YP_127847.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
 gi|54298584|ref|YP_124953.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
 gi|148358671|ref|YP_001249878.1| peptide deformylase [Legionella pneumophila str. Corby]
 gi|296108239|ref|YP_003619940.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|52629912|gb|AAU28653.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|53752369|emb|CAH13801.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
 gi|53755264|emb|CAH16758.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
 gi|148280444|gb|ABQ54532.1| peptide deformylase [Legionella pneumophila str. Corby]
 gi|295650141|gb|ADG25988.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|307611474|emb|CBX01145.1| hypothetical protein LPW_28441 [Legionella pneumophila 130b]
          Length = 170

 Score =  216 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LR++++P+E  +  +  LI++M + MY   G+GLAA QIGV  RL V
Sbjct: 1   MAIRKILYLPDERLRKIAKPVETFDESLQTLINDMFDTMYDARGVGLAAPQIGVSLRLSV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     +K  +V +NP+I++   +   ++EGCLS+P     V R+  +TV+ +D   +
Sbjct: 61  IDI--VGDKKEQIVIVNPEIVSSHGEKE-FEEGCLSVPGAYDTVVRAEKVTVKALDRFGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  +GLLA CLQHE+DH+NG LF+D LS LKR M  +K+ K  +L+
Sbjct: 118 PFEITGEGLLAECLQHEIDHMNGKLFVDMLSPLKRMMARRKLDKFKRLQ 166


>gi|167834978|ref|ZP_02461861.1| peptide deformylase [Burkholderia thailandensis MSMB43]
          Length = 167

 Score =  216 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+++  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSE--EKNELRVFINPELVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 TFEIDCEGLLAVCIQHEMDHLIGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|304399256|ref|ZP_07381122.1| peptide deformylase [Pantoea sp. aB]
 gi|304353182|gb|EFM17563.1| peptide deformylase [Pantoea sp. aB]
          Length = 170

 Score =  216 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 110/168 (65%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+V+ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +    +  +V INP+++  S +  + +EGCLSIP+ RA V R+  + VR +D +  
Sbjct: 61  IDVSESREER--LVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I  K+ KL + 
Sbjct: 118 SFELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLARQ 165


>gi|91774543|ref|YP_544299.1| peptide deformylase [Methylobacillus flagellatus KT]
 gi|91708530|gb|ABE48458.1| peptide deformylase [Methylobacillus flagellatus KT]
          Length = 167

 Score =  216 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V+ P+E++N DI  L+ +M E MY+  GIGLAA Q+ V  +++V
Sbjct: 1   MAILDILTYPDPRLHKVAAPVEEVNDDIRQLVRDMAETMYAAPGIGLAATQVDVHKQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   +    VFINPKI++       Y+EGCLS+P     V R+A +TV  +D + +
Sbjct: 61  IDLSE--DKSALQVFINPKIVSQCGS-QEYEEGCLSVPGIYEPVTRAAEVTVEALDEHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK+  I  K+ K  + R
Sbjct: 118 PFTLKADGLLAVCIQHEIDHLLGKVFVEYLSSLKQTRIKNKLKKRQRER 166


>gi|91974563|ref|YP_567222.1| peptide deformylase [Rhodopseudomonas palustris BisB5]
 gi|123722270|sp|Q13F18|DEF_RHOPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91681019|gb|ABE37321.1| peptide deformylase [Rhodopseudomonas palustris BisB5]
          Length = 175

 Score =  216 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++  +I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+  ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y ADV+R A + +RY D +
Sbjct: 61  MDIVRKEGNGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYADVERPAVVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHL+G+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLDGVLFVDHLSKLKRAMVVRKFEKAAK 169


>gi|163859048|ref|YP_001633346.1| peptide deformylase [Bordetella petrii DSM 12804]
 gi|163262776|emb|CAP45079.1| polypeptide deformylase [Bordetella petrii]
          Length = 170

 Score =  216 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L + ++P+  ++  I  L+ +M + MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLSILHYPDPRLHKKAKPVAVVDDRIRKLVRDMADTMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     V INP+I   SD+   Y+EGCLS+P    +V+R+A I  R +D +  
Sbjct: 61  IDVSEEGNE--LRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRYRALDADGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA C+QHELDHL+G +F+++LS LK++ I  K+ K  + 
Sbjct: 119 PYEAEAEGLLAVCVQHELDHLDGKVFVEYLSSLKQNRIKTKLKKAERE 166


>gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1]
 gi|300076747|gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score =  216 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +++ P+   +  I  L+ +M E MY+  G+GLAA Q+ V  ++VV
Sbjct: 1   MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    KN  VFINP+I+  S+D  VY EGCLS+P     V+R A + VR  D + +
Sbjct: 61  IDVSDDG--KNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 AFEVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166


>gi|146337885|ref|YP_001202933.1| peptide deformylase [Bradyrhizobium sp. ORS278]
 gi|158514293|sp|A4YLB9|DEF_BRASO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146190691|emb|CAL74695.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
           sp. ORS278]
          Length = 175

 Score =  216 bits (551), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 81/171 (47%), Positives = 117/171 (68%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+P+EK+  +I  L+D+M + MY   GIGLAA+Q+    R++ 
Sbjct: 1   MSLREIIILPDRQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60

Query: 61  IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL         ++ P VFINP+II  SD+ SVY+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKPDSGGETKREPRVFINPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   +   A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +
Sbjct: 121 LDGVVREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAK 171


>gi|329295654|ref|ZP_08252990.1| peptide deformylase [Plautia stali symbiont]
          Length = 170

 Score =  216 bits (551), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 110/168 (65%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P+  +N+D+  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDDRLRKIAAPVAAVNADVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +    +  +V INP+++  S +    +EGCLSIP+ RA V R+  + VR +D +  
Sbjct: 61  IDVSESREER--LVLINPELLEKSGETG-MEEGCLSIPEQRAFVPRAERVKVRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHELDHL+G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 SFELETDGLLAICIQHELDHLDGKLFIDYLSPLKRQRIKQKLEKLARQ 165


>gi|293602354|ref|ZP_06684800.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
 gi|292819116|gb|EFF78151.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
          Length = 170

 Score =  216 bits (551), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 69/172 (40%), Positives = 110/172 (63%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + ++    +  INP+I   SDD  +Y+EGCLS+P    +V+R++ I  + +D + +
Sbjct: 61  IDVSEDSNE--LLALINPEITWRSDDHKIYEEGCLSVPGIYDEVERASRIRCKALDIDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ--LRD 170
                ADGLLA C+QHELDHL G +F+++LS LK++ I  K+ K  +  LRD
Sbjct: 119 PFEFEADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKKAEREALRD 170


>gi|197286654|ref|YP_002152526.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227355155|ref|ZP_03839566.1| peptide deformylase [Proteus mirabilis ATCC 29906]
 gi|194684141|emb|CAR45570.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227164942|gb|EEI49789.1| peptide deformylase [Proteus mirabilis ATCC 29906]
          Length = 172

 Score =  216 bits (551), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 81/168 (48%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L+ FPD  LR+V+ P+EK++ +I  LID+M+E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MAVLTLLHFPDERLRKVATPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R  P+  INP+II+  D+     +GCLSIPD  A  +R  ++ V+ +D N  
Sbjct: 61  IDVSE--NRDQPIALINPEIISTEDEIMDMMDGCLSIPDSFAPTQRFRYLKVKALDRNGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  L A C+QHELDHLNG LFIDHLS LKR  I KK  KL +L
Sbjct: 119 EIELEAADLFAGCIQHELDHLNGKLFIDHLSPLKRQRIEKKQKKLSKL 166


>gi|110678658|ref|YP_681665.1| peptide deformylase [Roseobacter denitrificans OCh 114]
 gi|109454774|gb|ABG30979.1| peptide deformylase [Roseobacter denitrificans OCh 114]
          Length = 175

 Score =  216 bits (551), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 114/168 (67%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ +++ PDP L++ + P+  I+ ++  L D+MLE MY   GIGLAA Q+G+L R+VV+
Sbjct: 4   MKRSIILHPDPRLKKTAEPVADISDELRRLGDDMLETMYDAPGIGLAAPQVGILQRVVVM 63

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P++  NP++I  SD+ SVY+EGCLSIP+  A+V R A + VR+MD +  
Sbjct: 64  DCIKEPGDTPRPVIMFNPEVIATSDETSVYEEGCLSIPEQFAEVTRPAEVEVRWMDRDGA 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q     GL ATC QHE+DHL+G LFID+L  L+R MIT+KM KL + 
Sbjct: 124 AQSEVFTGLWATCAQHEIDHLDGKLFIDYLRPLRRQMITRKMVKLKRE 171


>gi|145300986|ref|YP_001143827.1| peptide deformylase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|158514058|sp|A4ST57|DEF_AERS4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|142853758|gb|ABO92079.1| polypeptide deformylase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 170

 Score =  216 bits (551), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E    ++ +++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R++P+V INP+I+  +    + +EGCLS+PD+RA V R+ ++ VR +D N Q
Sbjct: 61  IDVSE--NREDPLVLINPEILEQAGSTGI-EEGCLSVPDHRALVPRAEWVKVRALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ + 
Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMARE 165


>gi|127514664|ref|YP_001095861.1| peptide deformylase [Shewanella loihica PV-4]
 gi|126639959|gb|ABO25602.1| peptide deformylase [Shewanella loihica PV-4]
          Length = 170

 Score =  216 bits (551), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 80/169 (47%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++PI + N+++   IDNM E MY   GIGLAA Q+   ++L+V
Sbjct: 1   MSLLKVLRFPDERLRTIAKPITEFNAELQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFIN +II  S DF   +EGCLS+P   A V R+ F+T++ +D +  
Sbjct: 61  MDLQDDVER--PKVFINLEIIEKSGDF-CNEEGCLSVPGIYAKVDRAEFVTIKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGL A CLQHELDHLNG LF+D+LS LKR  I +K+ K  +L 
Sbjct: 118 EFTLEADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARLE 166


>gi|146329347|ref|YP_001209086.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
 gi|158513298|sp|A5EWL8|DEF_DICNV RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146232817|gb|ABQ13795.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
          Length = 181

 Score =  216 bits (551), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 9/176 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I PDP LR  ++P+   +  +  ++ NM E MY   GIGLAA Q+ +  RL+V
Sbjct: 1   MAIYSILIHPDPRLRLPAQPVTHFDDALAEIVQNMYETMYHFHGIGLAAPQVNIQQRLIV 60

Query: 61  IDLQDHAHRK---------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +D+   +  +         + +V +NP+I+  S++   Y+EGCLS+P+  A V R A IT
Sbjct: 61  MDVPQRSAEEGEKAEQIPSDKLVLVNPEIVQRSEECQDYEEGCLSLPNQYALVTRPANIT 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           VRY D     Q   A GLL+ C+QHE+DHLNG LFIDHLSRLKR+ + KK++K ++
Sbjct: 121 VRYQDITGATQERAAQGLLSVCIQHEIDHLNGGLFIDHLSRLKRERLEKKLAKSLK 176


>gi|325913842|ref|ZP_08176201.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325539917|gb|EGD11554.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 170

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 110/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDATEVTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +   +  P VFINP+I+T   +  VYQEGCLS+P   ADV R+  I VRY+D 
Sbjct: 61  FMVIDVSE--EKNAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAIAVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q   +  +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K+ +
Sbjct: 118 QGQAHELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKMRK 167


>gi|262089743|gb|ACY24837.1| Def peptide deformylase [uncultured organism]
          Length = 169

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 100/159 (62%), Gaps = 2/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ ++N  +  LID+M E MY   G+GLAA QI V  R+VV
Sbjct: 1   MAILEILEFPDPRLRTIAKPVTEVNDRVRKLIDDMFETMYDAPGVGLAASQINVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  PMVFINP++     D   Y EGCLS+P +   V+R   I+V  +D + +
Sbjct: 61  IDVSE--DKSQPMVFINPEVTVLDSDLHEYDEGCLSVPGFYETVERPEHISVTALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              I  +GLLA C+QHELDHLNG LF+D++S  KR  I 
Sbjct: 119 SFTIKPEGLLAVCIQHELDHLNGKLFVDYISSFKRTRIR 157


>gi|322513216|ref|ZP_08066342.1| peptide deformylase [Actinobacillus ureae ATCC 25976]
 gi|322120992|gb|EFX92833.1| peptide deformylase [Actinobacillus ureae ATCC 25976]
          Length = 170

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYENEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    + N +V INP+I+    +  + +EGCLSIP YRA V R   + V+ ++   +
Sbjct: 61  IDIE--GDKTNQVVLINPEILESCGETGI-EEGCLSIPGYRALVPRKEKVKVKALNRKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             I  ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL +  +
Sbjct: 118 EVIYDADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQIE 167


>gi|90422323|ref|YP_530693.1| peptide deformylase [Rhodopseudomonas palustris BisB18]
 gi|123089811|sp|Q21B62|DEF_RHOPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|90104337|gb|ABD86374.1| peptide deformylase [Rhodopseudomonas palustris BisB18]
          Length = 175

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 116/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+E +++++  L D+M E MY   GIGLAA+Q+    RL+ 
Sbjct: 1   MALREIIIIPDKQLRLISKPVETVSAEVRRLADDMFETMYEAPGIGLAAIQVAQPVRLIT 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +DL  ++      P  FINP++I+ S++ +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDLVRKEGNSLTEPRAFINPEVISASEEMNVYEEGCLSIPEYYAEVERPKQVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DH+S+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKRAMVMRKFEKAAK 169


>gi|187476716|ref|YP_784740.1| peptide deformylase [Bordetella avium 197N]
 gi|115421302|emb|CAJ47807.1| peptide deformylase [Bordetella avium 197N]
          Length = 170

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++V
Sbjct: 1   MALLPILRYPDPRLHKVAKPVAVVDDRIRQLVKDMAETMYDAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +       INP+I   S++  VY+EGCLS+P    +VKR+A I  + +D + +
Sbjct: 61  IDVSEDGNE--LRALINPEITWMSEELQVYEEGCLSVPGIYDEVKRAARIRCKALDTDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA C+QHE+DHL+G +F+++LS LK++ I  ++ K  + 
Sbjct: 119 VFEFEAEGLLAVCVQHEIDHLDGKVFVEYLSVLKQNRIKTRLKKAERE 166


>gi|24371632|ref|NP_715674.1| polypeptide deformylase [Shewanella oneidensis MR-1]
 gi|32363158|sp|Q8EKQ8|DEF1_SHEON RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|24345388|gb|AAN53119.1|AE015454_13 polypeptide deformylase [Shewanella oneidensis MR-1]
          Length = 168

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLKVLRFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFINP+II  S DF   +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVER--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTVEADDLFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAKQ 165


>gi|326319402|ref|YP_004237074.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376238|gb|ADX48507.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 169

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P++ ++  +  L+D+MLE MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLPILCYPDPRLHKVAQPVQAVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I+  S+D  V +EGCLS+P     V+RS+ + V+ +D   Q
Sbjct: 61  IDVSE--DRDTPLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSSAVRVQALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR  I  KM K  + 
Sbjct: 119 SRVIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQQRG 166


>gi|288941787|ref|YP_003444027.1| peptide deformylase [Allochromatium vinosum DSM 180]
 gi|288897159|gb|ADC62995.1| peptide deformylase [Allochromatium vinosum DSM 180]
          Length = 185

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR+ +RP+E+++  I  L+D+MLE MY+  GIGLAA Q+ V  +++V
Sbjct: 1   MAILDILTFPDPRLRQKARPVEQVDDQIRRLVDDMLETMYAAPGIGLAATQVDVQRQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+ FINP+++          EGCLS+P +   V R+  +TV  +D + +
Sbjct: 61  IDVSE--GHDTPLCFINPRLVAREGTEQ-MDEGCLSVPGFFETVTRAERVTVEALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL+G LF+DH+S LKR  I  K+ K  + R
Sbjct: 118 PFKLDADGLLAVCIQHEMDHLDGKLFVDHISILKRQRIRHKLEKQRKER 166


>gi|71083162|ref|YP_265881.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123748062|sp|Q4FNG1|DEF_PELUB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71062275|gb|AAZ21278.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 172

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/169 (47%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P+ +LR++S+P+E +  +   L+D+ML+ MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MSVKSILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I   +D  S Y+EGCLS+PD  A+++R     V Y+D N +
Sbjct: 61  MDISRDEDKKEPRYFVNPVIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+   R
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169


>gi|308188323|ref|YP_003932454.1| peptide deformylase [Pantoea vagans C9-1]
 gi|308058833|gb|ADO11005.1| peptide deformylase [Pantoea vagans C9-1]
          Length = 170

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 111/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+V+ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +    +  +V INP+++  S +  + +EGCLSIP+ RA V R+  + VR +D + +
Sbjct: 61  IDVSESREER--LVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I  K+ KL + 
Sbjct: 118 SFELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLARQ 165


>gi|21244525|ref|NP_644107.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
 gi|39931168|sp|Q8PG20|DEF2_XANAC RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21110197|gb|AAM38643.1| polypeptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 170

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 112/170 (65%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M   MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D   +  P VF+NP+I++   +  +YQEGCLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDISD--EKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|319940733|ref|ZP_08015075.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
 gi|319805884|gb|EFW02651.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
          Length = 179

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 101/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P++ +P P L   + P+   N  I  L+++M E MY+  G+GLAA Q+G+L R+VV
Sbjct: 1   MAKLPILQYPHPKLAAKAEPVADFNDAIKTLVNDMAETMYAAPGVGLAANQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     + +VFINP+II    D   ++EGCLS+      VKR   + V   +   +
Sbjct: 61  IDITDDNS--DLLVFINPEIIETKGDLVDHEEGCLSLKGLYEHVKRPGQVRVHAQNIEGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +   GLLA C+QHE+DHLNGI+FIDHLS+LK+     K+ KL + 
Sbjct: 119 PFELECTGLLAVCIQHEVDHLNGIVFIDHLSQLKKQRACTKLRKLRRE 166


>gi|254251081|ref|ZP_04944399.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
 gi|124893690|gb|EAY67570.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
          Length = 167

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+I+  SD   VY+EGCLS+P    +V+R   + VR ++ N +
Sbjct: 61  IDVSE--EKNELRAFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDRVRVRALNENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165


>gi|325924333|ref|ZP_08185877.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
 gi|325545198|gb|EGD16508.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
          Length = 170

 Score =  215 bits (549), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 112/170 (65%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSPAFQRLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D   +  P VFINP+I++   +  +YQEGCLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSD--EKNLPQVFINPQIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYVDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + Q Q +  +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 HGQAQELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|56459130|ref|YP_154411.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
 gi|81678352|sp|Q5QXI5|DEF_IDILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56178140|gb|AAV80862.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
          Length = 174

 Score =  215 bits (549), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PD  LR+V++ IEK++ +I ++ID+M E MY   G+GLAA Q+ V  RL V
Sbjct: 1   MAKMTVLQYPDERLRKVAQKIEKVDDNIRSVIDDMFETMYEEQGVGLAATQVDVHRRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +   +  P+VFINP+I      F    EGCLS P   A V+R+  ITV  +D N +
Sbjct: 61  SDCSE--DQNEPLVFINPEITEAEGHF-KNDEGCLSFPGVYAKVERAERITVTALDKNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K  +L +
Sbjct: 118 RFSRSAEGLLAICIQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLAE 167


>gi|161526293|ref|YP_001581305.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|160343722|gb|ABX16808.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
          Length = 181

 Score =  215 bits (549), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 15  MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 75  IDVSE--DKNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 132

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 133 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 179


>gi|167579358|ref|ZP_02372232.1| peptide deformylase [Burkholderia thailandensis TXDOH]
 gi|167617459|ref|ZP_02386090.1| peptide deformylase [Burkholderia thailandensis Bt4]
 gi|257140665|ref|ZP_05588927.1| peptide deformylase [Burkholderia thailandensis E264]
          Length = 167

 Score =  215 bits (549), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSE--DKNELRVFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|299531890|ref|ZP_07045290.1| peptide deformylase [Comamonas testosteroni S44]
 gi|298720065|gb|EFI61022.1| peptide deformylase [Comamonas testosteroni S44]
          Length = 170

 Score =  215 bits (549), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PM  INP+I+  S++  + +EGCLS+P     V+RS  + V+ +D +  
Sbjct: 61  IDVSEK--RNEPMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDESGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166


>gi|78049482|ref|YP_365657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325926150|ref|ZP_08187511.1| peptide deformylase [Xanthomonas perforans 91-118]
 gi|78037912|emb|CAJ25657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325543495|gb|EGD14917.1| peptide deformylase [Xanthomonas perforans 91-118]
          Length = 170

 Score =  215 bits (549), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 112/170 (65%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D   +  P VF+NP+I++   +  +YQEGCLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDISD--EKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q + ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQAQELQADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|117620047|ref|YP_854786.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561454|gb|ABK38402.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 170

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 112/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E    ++ +++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R++P+V INP+II  +    + +EGCLS+P  RA V R+ ++ VR +D + +
Sbjct: 61  IDVSE--NREDPLVLINPEIIEQAGSTGI-EEGCLSVPGSRALVPRAEWVKVRALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ + 
Sbjct: 118 AFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165


>gi|145633869|ref|ZP_01789590.1| peptide deformylase [Haemophilus influenzae 3655]
 gi|145635938|ref|ZP_01791624.1| peptide deformylase [Haemophilus influenzae PittAA]
 gi|229845579|ref|ZP_04465706.1| peptide deformylase [Haemophilus influenzae 6P18H1]
 gi|144985241|gb|EDJ92084.1| peptide deformylase [Haemophilus influenzae 3655]
 gi|145266797|gb|EDK06815.1| peptide deformylase [Haemophilus influenzae PittAA]
 gi|229811514|gb|EEP47216.1| peptide deformylase [Haemophilus influenzae 6P18H1]
          Length = 169

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|92119150|ref|YP_578879.1| peptide deformylase [Nitrobacter hamburgensis X14]
 gi|122990031|sp|Q1QH78|DEF_NITHX RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91802044|gb|ABE64419.1| peptide deformylase [Nitrobacter hamburgensis X14]
          Length = 175

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/172 (45%), Positives = 113/172 (65%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIE +  +I  L D+M E MY   GIGLA +QI    R++ 
Sbjct: 1   MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60

Query: 61  IDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +DL            P +FINP+I++ S++ S Y+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLARRDEEGELTPRPRIFINPEILSASEELSTYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +     A+G+ ATC+QHE+DHLNG+LF+DH+S+LKRD + KK +K  +L
Sbjct: 121 LDGKVHEEDAEGIYATCIQHEIDHLNGVLFVDHISKLKRDRVVKKFTKAAKL 172


>gi|254497986|ref|ZP_05110749.1| peptide deformylase [Legionella drancourtii LLAP12]
 gi|254352763|gb|EET11535.1| peptide deformylase [Legionella drancourtii LLAP12]
          Length = 171

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PDP LR +S+P+   +  +  LID+M E MY   G+GLAA QIGV  RL V
Sbjct: 1   MAIHKILYLPDPRLRELSKPVVTFDDTLQTLIDDMFETMYDAHGVGLAAAQIGVSLRLSV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     +KN +V INP+II  S+  S + EGCLS+P     V R+  +TV+ +D + +
Sbjct: 61  IDI--LGDKKNQIVIINPEIIA-SEGESKFDEGCLSVPGAYDTVTRAEKVTVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I A+GLLA CLQHE+DH+NG LFID LS LK+ M  KK+ K  + 
Sbjct: 118 PFEIKAEGLLAECLQHEIDHMNGKLFIDMLSPLKKAMARKKLDKFKRQ 165


>gi|126172288|ref|YP_001048437.1| peptide deformylase [Shewanella baltica OS155]
 gi|152998582|ref|YP_001364263.1| peptide deformylase [Shewanella baltica OS185]
 gi|160873157|ref|YP_001552473.1| peptide deformylase [Shewanella baltica OS195]
 gi|217971247|ref|YP_002355998.1| peptide deformylase [Shewanella baltica OS223]
 gi|125995493|gb|ABN59568.1| peptide deformylase [Shewanella baltica OS155]
 gi|151363200|gb|ABS06200.1| peptide deformylase [Shewanella baltica OS185]
 gi|160858679|gb|ABX47213.1| peptide deformylase [Shewanella baltica OS195]
 gi|217496382|gb|ACK44575.1| peptide deformylase [Shewanella baltica OS223]
 gi|315265382|gb|ADT92235.1| peptide deformylase [Shewanella baltica OS678]
          Length = 170

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFINP+II  S DF   +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVER--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|90415408|ref|ZP_01223342.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207]
 gi|90332731|gb|EAS47901.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207]
          Length = 168

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++P+ +++  I  LI +M + M    GIGLAA QI V  R++V
Sbjct: 1   MAILKILEFPDPRLRTVAKPVAEVDETIKRLIADMFDTMKDAQGIGLAATQIDVHLRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L +      P VFINP+I    +    Y+EGCLS+P +   V R A + +R +D   +
Sbjct: 61  MNLGEDD--IGPRVFINPEIEPLDESVDPYEEGCLSVPGFYEKVDRPAHVVIRALDGEGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A GLLA C+QHE+DHL G LF+D+LS  KR  I KK+ K+ + 
Sbjct: 119 AFKEEARGLLAVCIQHEIDHLEGKLFVDYLSPFKRQRIRKKLEKIHRQ 166


>gi|16272565|ref|NP_438782.1| peptide deformylase [Haemophilus influenzae Rd KW20]
 gi|260581531|ref|ZP_05849338.1| peptide deformylase [Haemophilus influenzae RdAW]
 gi|1169264|sp|P44786|DEF_HAEIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1573618|gb|AAC22282.1| polypeptide deformylase (def) [Haemophilus influenzae Rd KW20]
 gi|260091805|gb|EEW75761.1| peptide deformylase [Haemophilus influenzae RdAW]
          Length = 169

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ K+N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|319775435|ref|YP_004137923.1| peptide deformylase [Haemophilus influenzae F3047]
 gi|329122537|ref|ZP_08251120.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
 gi|317450026|emb|CBY86240.1| peptide deformylase [Haemophilus influenzae F3047]
 gi|327473142|gb|EGF18566.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
          Length = 169

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLKYKKQ 165


>gi|304313372|ref|YP_003812970.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1]
 gi|301799105|emb|CBL47348.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1]
          Length = 170

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/167 (43%), Positives = 109/167 (65%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P+ + ++ +  L ++MLE MY   GIGLAA QI V  +++V
Sbjct: 1   MALLDILEFPDPRLRTQAKPVTQFDAALRKLTEDMLETMYDAPGIGLAATQINVHQQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +  PMVFINP+I     +   Y+EGCLS+P +  +V R   I V+ ++   +
Sbjct: 61  MDVSE--DKSQPMVFINPQITVVGGEKE-YEEGCLSVPGFHENVVRPDVIHVKALNAQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLL+ CLQHE+DHLNG+LF+DH+SRLKRD I +K+ K  +
Sbjct: 118 AFELQADGLLSVCLQHEMDHLNGVLFVDHISRLKRDRIRRKLEKQHK 164


>gi|167855659|ref|ZP_02478417.1| peptide deformylase [Haemophilus parasuis 29755]
 gi|219871701|ref|YP_002476076.1| peptide deformylase [Haemophilus parasuis SH0165]
 gi|254767590|sp|B8F726|DEF_HAEPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167853231|gb|EDS24487.1| peptide deformylase [Haemophilus parasuis 29755]
 gi|219691905|gb|ACL33128.1| N-formylmethionyl-tRNA deformylase [Haemophilus parasuis SH0165]
          Length = 170

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L +V +P+E +++++   IDNM + MY  +GIGLAA Q+ VL R++ 
Sbjct: 1   MAVLDVLIYPDENLAKVCQPVETVDAELNTFIDNMFDTMYEHEGIGLAAPQVNVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    + N +V INP+I+  S +  + +EGCLSIP  RA V R   +TV+ ++   Q
Sbjct: 61  IDIE--GDKTNQIVLINPEILESSGETGI-EEGCLSIPGCRALVPRKEKLTVKALNREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHLNG+LF+DH+S+LKR  I +KM KL +  +
Sbjct: 118 TFTLEADGLLAICIQHEIDHLNGVLFVDHISQLKRQRIKEKMLKLKKQIE 167


>gi|120613319|ref|YP_972997.1| peptide deformylase [Acidovorax citrulli AAC00-1]
 gi|120591783|gb|ABM35223.1| peptide deformylase [Acidovorax citrulli AAC00-1]
          Length = 169

 Score =  214 bits (547), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P++ ++  +  L+D+MLE MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLPILCYPDPRLHKVAQPVQVVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I+  S+D  V +EGCLS+P     V+RS  + V+ +D   Q
Sbjct: 61  IDVSE--DRDTPLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSTAVRVQALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR  I  KM K  + 
Sbjct: 119 SRVIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQQRG 166


>gi|68249189|ref|YP_248301.1| peptide deformylase [Haemophilus influenzae 86-028NP]
 gi|145629886|ref|ZP_01785678.1| peptide deformylase [Haemophilus influenzae 22.1-21]
 gi|145637962|ref|ZP_01793602.1| peptide deformylase [Haemophilus influenzae PittHH]
 gi|145639368|ref|ZP_01794973.1| peptide deformylase [Haemophilus influenzae PittII]
 gi|145642285|ref|ZP_01797850.1| peptide deformylase [Haemophilus influenzae R3021]
 gi|148826745|ref|YP_001291498.1| peptide deformylase [Haemophilus influenzae PittEE]
 gi|148827778|ref|YP_001292531.1| peptide deformylase [Haemophilus influenzae PittGG]
 gi|229846679|ref|ZP_04466787.1| peptide deformylase [Haemophilus influenzae 7P49H1]
 gi|81336405|sp|Q4QMV6|DEF_HAEI8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166198517|sp|A5UEB4|DEF_HAEIE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166198518|sp|A5UH92|DEF_HAEIG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|68057388|gb|AAX87641.1| peptide deformylase [Haemophilus influenzae 86-028NP]
 gi|144977740|gb|EDJ87687.1| peptide deformylase [Haemophilus influenzae 22.1-21]
 gi|145268853|gb|EDK08816.1| peptide deformylase [Haemophilus influenzae PittHH]
 gi|145271415|gb|EDK11327.1| peptide deformylase [Haemophilus influenzae PittII]
 gi|145273041|gb|EDK12922.1| peptide deformylase [Haemophilus influenzae 22.4-21]
 gi|148716905|gb|ABQ99115.1| peptide deformylase [Haemophilus influenzae PittEE]
 gi|148719020|gb|ABR00148.1| hypothetical protein CGSHiGG_06235 [Haemophilus influenzae PittGG]
 gi|229810772|gb|EEP46490.1| peptide deformylase [Haemophilus influenzae 7P49H1]
 gi|301169340|emb|CBW28939.1| peptide deformylase [Haemophilus influenzae 10810]
 gi|309751783|gb|ADO81767.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2866]
          Length = 169

 Score =  214 bits (547), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|71905663|ref|YP_283250.1| peptide deformylase [Dechloromonas aromatica RCB]
 gi|71845284|gb|AAZ44780.1| peptide deformylase [Dechloromonas aromatica RCB]
          Length = 167

 Score =  214 bits (547), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/167 (43%), Positives = 104/167 (62%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP L++V+ P+ K++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILRFPDPRLKKVALPVAKVDDSIRKLVADMAETMYEAPGIGLAATQVDVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP + +  +     +EGCLS+P     V+R+  + V Y+D +  
Sbjct: 61  IDVSE--DKSELQAFINPVL-SRCEGSQTGEEGCLSVPGIYDKVERAESVVVTYLDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q + ADGLLA CLQHELDHLNG +F+DHLS LK+  I  K++K  +
Sbjct: 118 QQTLAADGLLAVCLQHELDHLNGTVFVDHLSLLKQTRIRNKLAKQAR 164


>gi|221201858|ref|ZP_03574895.1| peptide deformylase [Burkholderia multivorans CGD2M]
 gi|221207636|ref|ZP_03580644.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221214668|ref|ZP_03587638.1| peptide deformylase [Burkholderia multivorans CGD1]
 gi|221165558|gb|EED98034.1| peptide deformylase [Burkholderia multivorans CGD1]
 gi|221172482|gb|EEE04921.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221178278|gb|EEE10688.1| peptide deformylase [Burkholderia multivorans CGD2M]
          Length = 181

 Score =  214 bits (547), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 15  MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 75  IDVSE--DKNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 132

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 133 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 179


>gi|113968375|ref|YP_732168.1| peptide deformylase [Shewanella sp. MR-4]
 gi|114045540|ref|YP_736090.1| peptide deformylase [Shewanella sp. MR-7]
 gi|117918494|ref|YP_867686.1| peptide deformylase [Shewanella sp. ANA-3]
 gi|113883059|gb|ABI37111.1| peptide deformylase [Shewanella sp. MR-4]
 gi|113886982|gb|ABI41033.1| peptide deformylase [Shewanella sp. MR-7]
 gi|117610826|gb|ABK46280.1| peptide deformylase [Shewanella sp. ANA-3]
          Length = 168

 Score =  214 bits (547), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  + P+ +  +++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLKVLRFPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFINP+II  S DF   +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVDR--PKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARQ 165


>gi|189348993|ref|YP_001944621.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|189333015|dbj|BAG42085.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
          Length = 167

 Score =  214 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSE--DKNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165


>gi|307543965|ref|YP_003896444.1| peptide deformylase [Halomonas elongata DSM 2581]
 gi|307215989|emb|CBV41259.1| peptide deformylase [Halomonas elongata DSM 2581]
          Length = 170

 Score =  214 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P++ FPD  LR  +  +E ++ ++  L+D+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLPILEFPDERLRTEAAAVETVDDEVRQLVDDMLETMYDARGIGLAATQVDVHRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +  P+V INP+     D+    QEGCLSIP+Y A+V R+  + ++ ++   +
Sbjct: 61  MDVSD--DQSAPLVLINPEYTPIGDEREPMQEGCLSIPEYYAEVPRALKVHLKALNRQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHL G+LF+D+LS LKRD + KKM K  +L
Sbjct: 119 PYELEAEGLLAHCIQHECDHLRGVLFVDYLSPLKRDRVMKKMQKRHKL 166


>gi|238028945|ref|YP_002913176.1| polypeptide deformylase [Burkholderia glumae BGR1]
 gi|237878139|gb|ACR30472.1| Polypeptide deformylase [Burkholderia glumae BGR1]
          Length = 167

 Score =  214 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+  ++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAVVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   +    VFINP+I+  SD   +Y+EGCLS+P    +V+R   + VR +D   Q
Sbjct: 61  IDTSE--DKNELRVFINPEIVWSSDGKQIYEEGCLSVPGVYDEVERPDHVRVRALDVQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK++ I  KM KL +
Sbjct: 119 QFELDCEGLLAVCVQHEMDHLLGRVFVQYLSPLKQNRIKSKMKKLER 165


>gi|33152876|ref|NP_874229.1| peptide deformylase [Haemophilus ducreyi 35000HP]
 gi|39930849|sp|Q7VKK9|DEF_HAEDU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33149101|gb|AAP96618.1| peptide deformylase [Haemophilus ducreyi 35000HP]
          Length = 171

 Score =  214 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY   GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLQVVLYPDDRLTKVCEPVTQVDDELNQFIDDMFDTMYQEGGIGLAASQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    + N +V INP+I+    +  + +EGCLSIP YRA V R   ITV+ ++   +
Sbjct: 61  IDIE--GDKTNQVVLINPEILESCGETGI-EEGCLSIPGYRALVPRKEKITVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I +AD L A C+QHE+DHLNGI+F+DH+S LKR  I  KM KL + 
Sbjct: 118 EVIYHADDLFAICIQHEIDHLNGIVFVDHISNLKRQRIKDKMQKLKKQ 165


>gi|297182651|gb|ADI18809.1| N-formylmethionyl-tRNA deformylase [uncultured SAR11 cluster
           bacterium HF4000_37C10]
          Length = 185

 Score =  214 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/181 (44%), Positives = 121/181 (66%), Gaps = 11/181 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P+ +LR  S  +E+++ D+  L+D+MLE MY+  GIGLAA+Q+GV  R++V
Sbjct: 1   MALREILTEPNKLLREKSLAVEEVDEDLQKLMDDMLETMYAAPGIGLAAIQVGVPKRVIV 60

Query: 61  IDLQDHA-----------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D++               RKNPM F+NP+II  S + S+Y+EGCLS+P   A++ RS  
Sbjct: 61  LDIRWRDKSESTSDEKQVERKNPMCFVNPEIIAKSTNNSIYEEGCLSVPGQFAEIARSDK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             V+Y+D   Q +   A+G+LATC+QHE+DHL GILFID+LS+LK+ MI KK++K  +  
Sbjct: 121 CHVKYLDYYGQPKEFVAEGMLATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAKQKEQL 180

Query: 170 D 170
           D
Sbjct: 181 D 181


>gi|119503586|ref|ZP_01625669.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
 gi|119460648|gb|EAW41740.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
          Length = 168

 Score =  214 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR ++ P+  +++ +  L D+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAILSILEFPDPRLRTIAVPVTHVDARVQRLTDDMLETMYDAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  ++  P +FINP +         Y EGCLS+P +   ++R   I V   D + +
Sbjct: 61  IDISE--NKDQPQIFINPVVEALDQTLGEYDEGCLSVPGFYETIRRPERIRVTAKDRDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 DGLLA CLQHE+DHL G LF+D+LS LKR  I  K+ K  + RD
Sbjct: 119 LFSRELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRGKLEKAQRQRD 168


>gi|119475268|ref|ZP_01615621.1| peptide deformylase [marine gamma proteobacterium HTCC2143]
 gi|119451471|gb|EAW32704.1| peptide deformylase [marine gamma proteobacterium HTCC2143]
          Length = 168

 Score =  214 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++ ++ ++  I  L+D+ML  MY   GIGLAA QI +  R+VV
Sbjct: 1   MTILQILEFPDPRLRTIAKTVDTVDESIRTLLDDMLVTMYDASGIGLAATQINIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P VFINP+II        Y+EGCLS+P +   V R   I V+ +D +  
Sbjct: 61  IDVSETG--DQPQVFINPEIIILDGPDHEYEEGCLSVPGFHETVSRPEKIIVKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  +GLLA C+QHE+DHLNG LF+DH+S+LKR  I  K+ K  + 
Sbjct: 119 PFELQPEGLLAVCIQHEVDHLNGKLFVDHISQLKRKRIRAKLEKQHKQ 166


>gi|325272511|ref|ZP_08138888.1| peptide deformylase [Pseudomonas sp. TJI-51]
 gi|324102354|gb|EGB99823.1| peptide deformylase [Pseudomonas sp. TJI-51]
          Length = 168

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+   +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTVFDDALRQLIDDMFETMYEAPGIGLAATQVNVHQQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP +   +DD   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSE--DRSEPRVFINPTVEELTDDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|238752657|ref|ZP_04614128.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
 gi|238709084|gb|EEQ01331.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
          Length = 170

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++NS+I  ++D+M + MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNSEIQRIVDDMFDTMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAKL 165


>gi|254229999|ref|ZP_04923400.1| peptide deformylase [Vibrio sp. Ex25]
 gi|269966999|ref|ZP_06181069.1| peptide deformylase [Vibrio alginolyticus 40B]
 gi|151937501|gb|EDN56358.1| peptide deformylase [Vibrio sp. Ex25]
 gi|269828393|gb|EEZ82657.1| peptide deformylase [Vibrio alginolyticus 40B]
          Length = 203

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 32  MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 91

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 92  IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 148

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 149 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 198


>gi|77917861|ref|YP_355676.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380]
 gi|77543944|gb|ABA87506.1| peptide deformylase [Pelobacter carbinolicus DSM 2380]
          Length = 171

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 103/170 (60%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L+  S PI  I  +I  L  +M E MY+  G+GLAA Q+G+  +LVV
Sbjct: 1   MAILPIRHYPDPVLKNKSEPILTITEEIKTLAADMAETMYAAPGVGLAAPQVGINKKLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     +    +V INP+II    D    +EGCLS+P Y   +KR++ + VRY +   Q
Sbjct: 61  MDCAPKEN-PELIVAINPEIIEREGDSFE-EEGCLSVPGYYCRIKRNSHVKVRYQNLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  K+ + ++
Sbjct: 119 TVEREATGLLAIAFQHEIDHLHGLLFVDHLSSLKKNMFRKKYQKIQRQQE 168


>gi|221135272|ref|ZP_03561575.1| peptide deformylase [Glaciecola sp. HTCC2999]
          Length = 169

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P+  IN  I  L+ +M E M +  G+GLAA Q+ V  +++V
Sbjct: 1   MAVLTVLTFPDERLRTKAKPVNDINDSIRTLVADMFETMKAERGVGLAATQVNVHQQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +  P+VFINPK+I       + +EGCLS+P+  A V+R+ +I V  ++ + +
Sbjct: 61  MDVSD--DQDTPLVFINPKVIEQRG-TKINEEGCLSVPNNYAKVERAEWIKVSALNEHGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G LF+D+LS LKR  I KK+ K  ++
Sbjct: 118 EFTMEAEGLLAVCIQHEMDHLQGKLFVDYLSSLKRQRIMKKLEKEARI 165


>gi|254491036|ref|ZP_05104217.1| peptide deformylase [Methylophaga thiooxidans DMS010]
 gi|224463549|gb|EEF79817.1| peptide deformylase [Methylophaga thiooxydans DMS010]
          Length = 167

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR+ + PI  +N  I  L D+MLE MY   GIGLAA Q+ +  R++V
Sbjct: 1   MAILNILHFPDPRLRKKAEPITDVNDKIRQLADDMLETMYDAPGIGLAATQVNIQKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   + +P+V INP+I+    +   ++EGCLS+P+    V R+  + ++ ++   +
Sbjct: 61  IDISE--DKSDPLVLINPEIVAAEGERE-FEEGCLSVPEAYEAVIRADKVKIKAVNLQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGLLATC+QHE+DHL+G LF+D+LS LKR  I K++ K  + +
Sbjct: 118 DFEFTTDGLLATCVQHEIDHLDGKLFVDYLSNLKRQRIKKRLEKHQKQK 166


>gi|78067947|ref|YP_370716.1| peptide deformylase [Burkholderia sp. 383]
 gi|77968692|gb|ABB10072.1| peptide deformylase [Burkholderia sp. 383]
          Length = 167

 Score =  214 bits (546), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+I+  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSE--EKNELRAFINPEIVWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|86157152|ref|YP_463937.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773663|gb|ABC80500.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 185

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V++P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VI
Sbjct: 1   MVREIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    +   Y EGCLSIP    DV R A + VR +D   + 
Sbjct: 61  DTSPRQEGQTLLHLVNPEIVRGEGEL-TYTEGCLSIPGEAEDVDRFARVWVRALDRQGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEADGLLAVALQHETDHLNGTMFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|332289299|ref|YP_004420151.1| peptide deformylase [Gallibacterium anatis UMN179]
 gi|330432195|gb|AEC17254.1| peptide deformylase [Gallibacterium anatis UMN179]
          Length = 171

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+EK++ +I   IDNM E MY  +GIGLAA Q+    R++ 
Sbjct: 1   MAILDVLCFPDERLRTVAAPVEKVDDEIREFIDNMFETMYQQEGIGLAATQVNRHQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    + N +V INP+I+    +  + +EGCLS+P +R  V R   +TV+ +D N +
Sbjct: 61  IDVE--GDKSNQLVLINPEIVESDGETGI-EEGCLSVPGFRGLVPRKEKVTVKALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A  LLA C+QHE+DHLNG++F+D+LS LKR+ I  K+ K  +  +
Sbjct: 118 PFTLEASDLLAICIQHEIDHLNGVMFVDYLSPLKRNRIKDKLVKYKKQLE 167


>gi|46143358|ref|ZP_00204456.1| COG0242: N-formylmethionyl-tRNA deformylase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|190151040|ref|YP_001969565.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303249953|ref|ZP_07336155.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|303253125|ref|ZP_07339274.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307246635|ref|ZP_07528706.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307248763|ref|ZP_07530776.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307253382|ref|ZP_07535253.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307255620|ref|ZP_07537425.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257796|ref|ZP_07539553.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307260071|ref|ZP_07541783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|307262201|ref|ZP_07543851.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|307264402|ref|ZP_07545988.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|238692356|sp|B3GYT7|DEF_ACTP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189916171|gb|ACE62423.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302647807|gb|EFL78014.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302651016|gb|EFL81170.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306852507|gb|EFM84741.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306854690|gb|EFM86880.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306859061|gb|EFM91103.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861469|gb|EFM93458.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306863702|gb|EFM95628.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306865907|gb|EFM97783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306868075|gb|EFM99901.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306870218|gb|EFN01976.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 170

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    + N +V INP+I+    +  + +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIE--GDKTNQVVLINPEILESCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             I  ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL +  +
Sbjct: 118 EVIYEADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQIE 167


>gi|254361452|ref|ZP_04977592.1| peptide deformylase [Mannheimia haemolytica PHL213]
 gi|261491954|ref|ZP_05988531.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496243|ref|ZP_05992648.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153092962|gb|EDN73988.1| peptide deformylase [Mannheimia haemolytica PHL213]
 gi|261308074|gb|EEY09372.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312421|gb|EEY13547.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 170

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L  V  P+E+++  +   ID+M E MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    + N +V INP+I+  S +  + +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIE--GDKTNQVVLINPEILESSGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             II AD L A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL + 
Sbjct: 118 EIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQKLKKQ 165


>gi|58424802|gb|AAW73839.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 183

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           MV  P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 14  MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 73

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D   +  P VF+NP+I++   +  + QEGCLS+P   ADV R+  ITVRY+D 
Sbjct: 74  FMVIDVSD--EKNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLDR 130

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 131 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 180


>gi|319897841|ref|YP_004136038.1| peptide deformylase [Haemophilus influenzae F3031]
 gi|317433347|emb|CBY81725.1| peptide deformylase [Haemophilus influenzae F3031]
          Length = 169

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+    P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVACEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLKYKKQ 165


>gi|166713738|ref|ZP_02244945.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 170

 Score =  214 bits (545), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P++     +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D   +  P VF+NP+I++   +  + QEGCLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSD--EKNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|107024058|ref|YP_622385.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116691145|ref|YP_836768.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|206558867|ref|YP_002229627.1| peptide deformylase [Burkholderia cenocepacia J2315]
 gi|105894247|gb|ABF77412.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116649234|gb|ABK09875.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|198034904|emb|CAR50776.1| peptide deformylase [Burkholderia cenocepacia J2315]
          Length = 167

 Score =  214 bits (545), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+I+  SD    Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSE--EKNELRAFINPEIVWSSDAKQTYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|22127893|ref|NP_671316.1| peptide deformylase [Yersinia pestis KIM 10]
 gi|45440100|ref|NP_991639.1| peptide deformylase [Yersinia pestis biovar Microtus str. 91001]
 gi|51597955|ref|YP_072146.1| peptide deformylase [Yersinia pseudotuberculosis IP 32953]
 gi|108809222|ref|YP_653138.1| peptide deformylase [Yersinia pestis Antiqua]
 gi|108813987|ref|YP_649754.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|145597483|ref|YP_001161558.1| peptide deformylase [Yersinia pestis Pestoides F]
 gi|150260710|ref|ZP_01917438.1| polypeptide deformylase [Yersinia pestis CA88-4125]
 gi|153950090|ref|YP_001402830.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758]
 gi|162418261|ref|YP_001605206.1| peptide deformylase [Yersinia pestis Angola]
 gi|165927898|ref|ZP_02223730.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936499|ref|ZP_02225067.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010552|ref|ZP_02231450.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213183|ref|ZP_02239218.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398768|ref|ZP_02304292.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419139|ref|ZP_02310892.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425700|ref|ZP_02317453.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468246|ref|ZP_02332950.1| peptide deformylase [Yersinia pestis FV-1]
 gi|170022577|ref|YP_001719082.1| peptide deformylase [Yersinia pseudotuberculosis YPIII]
 gi|186897151|ref|YP_001874263.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+]
 gi|218927448|ref|YP_002345323.1| peptide deformylase [Yersinia pestis CO92]
 gi|229836276|ref|ZP_04456443.1| peptide deformylase [Yersinia pestis Pestoides A]
 gi|229840100|ref|ZP_04460259.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842182|ref|ZP_04462337.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904518|ref|ZP_04519629.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|270488264|ref|ZP_06205338.1| peptide deformylase [Yersinia pestis KIM D27]
 gi|294502316|ref|YP_003566378.1| peptide deformylase [Yersinia pestis Z176003]
 gi|23396545|sp|Q8ZJ79|DEF_YERPE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81691640|sp|Q664V4|DEF_YERPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123073067|sp|Q1CCX6|DEF_YERPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123372104|sp|Q1C2X9|DEF_YERPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158514064|sp|A4TH23|DEF_YERPP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167012067|sp|A7FNK2|DEF_YERP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687338|sp|A9R927|DEF_YERPG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238688470|sp|B1JJH8|DEF_YERPY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238691391|sp|B2K504|DEF_YERPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21961030|gb|AAM87567.1|AE014004_5 peptide deformylase [Yersinia pestis KIM 10]
 gi|45434955|gb|AAS60516.1| polypeptide deformylase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51591237|emb|CAH22903.1| polypeptide deformylase [Yersinia pseudotuberculosis IP 32953]
 gi|108777635|gb|ABG20154.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|108781135|gb|ABG15193.1| peptide deformylase [Yersinia pestis Antiqua]
 gi|115346059|emb|CAL18925.1| polypeptide deformylase [Yersinia pestis CO92]
 gi|145209179|gb|ABP38586.1| peptide deformylase [Yersinia pestis Pestoides F]
 gi|149290118|gb|EDM40195.1| polypeptide deformylase [Yersinia pestis CA88-4125]
 gi|152961585|gb|ABS49046.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758]
 gi|162351076|gb|ABX85024.1| peptide deformylase [Yersinia pestis Angola]
 gi|165915615|gb|EDR34224.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165920174|gb|EDR37475.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990642|gb|EDR42943.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205481|gb|EDR49961.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963133|gb|EDR59154.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051272|gb|EDR62680.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167055390|gb|EDR65184.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749111|gb|ACA66629.1| peptide deformylase [Yersinia pseudotuberculosis YPIII]
 gi|186700177|gb|ACC90806.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+]
 gi|229678636|gb|EEO74741.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|229690492|gb|EEO82546.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696466|gb|EEO86513.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706344|gb|EEO92351.1| peptide deformylase [Yersinia pestis Pestoides A]
 gi|262360396|gb|ACY57117.1| peptide deformylase [Yersinia pestis D106004]
 gi|262364346|gb|ACY60903.1| peptide deformylase [Yersinia pestis D182038]
 gi|270336768|gb|EFA47545.1| peptide deformylase [Yersinia pestis KIM D27]
 gi|294352775|gb|ADE63116.1| peptide deformylase [Yersinia pestis Z176003]
 gi|320013375|gb|ADV96946.1| peptide deformylase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 170

 Score =  214 bits (545), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDISE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|115353233|ref|YP_775072.1| peptide deformylase [Burkholderia ambifaria AMMD]
 gi|115283221|gb|ABI88738.1| peptide deformylase [Burkholderia ambifaria AMMD]
          Length = 167

 Score =  214 bits (545), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISE--EKNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|126441948|ref|YP_001057204.1| polypeptide deformylase [Burkholderia pseudomallei 668]
 gi|126453149|ref|YP_001064443.1| polypeptide deformylase [Burkholderia pseudomallei 1106a]
 gi|217424946|ref|ZP_03456442.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|226194603|ref|ZP_03790198.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
 gi|237810338|ref|YP_002894789.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|242315752|ref|ZP_04814768.1| peptide deformylase [Burkholderia pseudomallei 1106b]
 gi|254182253|ref|ZP_04888850.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|254197101|ref|ZP_04903524.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|126221441|gb|ABN84947.1| peptide deformylase [Burkholderia pseudomallei 668]
 gi|126226791|gb|ABN90331.1| peptide deformylase [Burkholderia pseudomallei 1106a]
 gi|169653843|gb|EDS86536.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|184212791|gb|EDU09834.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|217391966|gb|EEC31992.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|225933304|gb|EEH29296.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
 gi|237506162|gb|ACQ98480.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|242138991|gb|EES25393.1| peptide deformylase [Burkholderia pseudomallei 1106b]
          Length = 179

 Score =  213 bits (544), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 13  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 73  IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 131 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177


>gi|134284113|ref|ZP_01770807.1| polypeptide deformylase [Burkholderia pseudomallei 305]
 gi|76578939|gb|ABA48414.1| peptide deformylase [Burkholderia pseudomallei 1710b]
 gi|134244565|gb|EBA44669.1| polypeptide deformylase [Burkholderia pseudomallei 305]
          Length = 201

 Score =  213 bits (544), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 35  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 94

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 95  IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 152

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 153 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 199


>gi|270157753|ref|ZP_06186410.1| peptide deformylase [Legionella longbeachae D-4968]
 gi|289163978|ref|YP_003454116.1| polypeptide deformylase [Legionella longbeachae NSW150]
 gi|269989778|gb|EEZ96032.1| peptide deformylase [Legionella longbeachae D-4968]
 gi|288857151|emb|CBJ10967.1| putative polypeptide deformylase [Legionella longbeachae NSW150]
          Length = 170

 Score =  213 bits (544), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P+   +  +  LI++M E MY+  G+GLAA QIG+  RL V
Sbjct: 1   MAIHTILYLPDARLREVAKPVVHFDDKLQTLIEDMFETMYAAHGVGLAAPQIGIGLRLSV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     +KN +V INP+II  S+    ++EGCLS+P     V R+  + V+ +D   +
Sbjct: 61  IDI--AGDKKNQLVIINPEIIA-SEGEKKFEEGCLSVPGAYDTVIRAEKVIVKALDRTGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I ADGLLA CLQHE+DH+NG LFID LS LK+ M  KK+ K  + 
Sbjct: 118 PFEIQADGLLAECLQHEIDHMNGKLFIDLLSPLKKAMARKKLEKFKRQ 165


>gi|167585076|ref|ZP_02377464.1| peptide deformylase [Burkholderia ubonensis Bu]
          Length = 167

 Score =  213 bits (544), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNIIHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+++  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDISE--DKSELRAFINPELVWSSDAKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKSKMKKLER 165


>gi|291619142|ref|YP_003521884.1| Def [Pantoea ananatis LMG 20103]
 gi|291154172|gb|ADD78756.1| Def [Pantoea ananatis LMG 20103]
 gi|327395471|dbj|BAK12893.1| peptide deformylase Def [Pantoea ananatis AJ13355]
          Length = 170

 Score =  213 bits (544), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 111/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++++N+D+  ++D+M E MYS +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKIAAPVKEVNADVQRIVDDMFETMYSEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +    LLA C+QHE+DHL+G LFID+LS LKR  I  K+ KL + 
Sbjct: 118 SFELETGDLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKTKLEKLARQ 165


>gi|254447455|ref|ZP_05060921.1| peptide deformylase [gamma proteobacterium HTCC5015]
 gi|198262798|gb|EDY87077.1| peptide deformylase [gamma proteobacterium HTCC5015]
          Length = 169

 Score =  213 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 106/158 (67%), Gaps = 3/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR+  +P+E+++ ++   ID+M E MY   GIGLAA+Q+    RL++
Sbjct: 1   MAKLEILHFPDPRLRQACKPVEQVDDELRQFIDDMFETMYDAPGIGLAAIQVNRHERLLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ + A   NP+VFINP+II   D   V QEGCLS+P +  +V+R+  I V+ +D + +
Sbjct: 61  TDVSEDAS--NPLVFINPEIIEA-DGVEVTQEGCLSVPGFYENVERAEHIVVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              +  DGL A C+QHE+DHL+G LF+D+LS LKR+ I
Sbjct: 118 AFEMACDGLQAVCVQHEIDHLDGKLFVDYLSPLKRNRI 155


>gi|71898893|ref|ZP_00681060.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|71731305|gb|EAO33369.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
          Length = 170

 Score =  213 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 81/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +   +  PMVFINP+I+T   D  V+QEGCLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVIDVSE--EKNVPMVFINPEIVTKEGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K  +
Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167


>gi|325526701|gb|EGD04225.1| peptide deformylase [Burkholderia sp. TJI49]
          Length = 167

 Score =  213 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSE--EKNELRAFINPEIIWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165


>gi|170718226|ref|YP_001785248.1| peptide deformylase [Haemophilus somnus 2336]
 gi|189083072|sp|B0UWZ5|DEF_HAES2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|168826355|gb|ACA31726.1| peptide deformylase [Haemophilus somnus 2336]
          Length = 170

 Score =  213 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V+ P+   + ++   IDNM E MY  +GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N +V INPKI+    +  + +EGCLS+P  R  V R   + V+  +   +
Sbjct: 61  IDIEGT--KENQIVLINPKILESFGETGI-EEGCLSLPGLRGFVPRKETVKVKAQNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             ++ ADGLLA C+QHE+DHLNGI+F DHLS LKR  + +K+ KL + 
Sbjct: 118 EFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQKQ 165


>gi|153003639|ref|YP_001377964.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5]
 gi|152027212|gb|ABS24980.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5]
          Length = 185

 Score =  213 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 110/168 (65%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V+ P+E+++  I  L+D+M E MY+ DG+GLAA QI VL R++VI
Sbjct: 1   MVREIVIWPDPILKEVANPVERVDDSIRRLLDDMAETMYAADGVGLAAPQIAVLKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    +   + EGCLSIP    DV R+A + VR +D + + 
Sbjct: 61  DTSPRQEGQKLIHLVNPEIVRAEGET-TWTEGCLSIPGEAEDVARAAKVWVRALDYHGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + AD LLA  +QHE DHLNG LF+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEADELLAIAVQHETDHLNGTLFVDHLSSLKRELIRKRMKKLKTQR 167


>gi|37681409|ref|NP_936018.1| peptide deformylase [Vibrio vulnificus YJ016]
 gi|39930925|sp|Q7MGK6|DEF2_VIBVY RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|37200161|dbj|BAC95989.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016]
          Length = 202

 Score =  213 bits (543), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 33  MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 92

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 93  IDISES--RNEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGH 149

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 150 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 199


>gi|53717762|ref|YP_106748.1| peptide deformylase [Burkholderia pseudomallei K96243]
 gi|162210090|ref|YP_331761.2| peptide deformylase [Burkholderia pseudomallei 1710b]
 gi|167717517|ref|ZP_02400753.1| polypeptide deformylase [Burkholderia pseudomallei DM98]
 gi|167736559|ref|ZP_02409333.1| polypeptide deformylase [Burkholderia pseudomallei 14]
 gi|167813633|ref|ZP_02445313.1| polypeptide deformylase [Burkholderia pseudomallei 91]
 gi|167822177|ref|ZP_02453648.1| polypeptide deformylase [Burkholderia pseudomallei 9]
 gi|167843768|ref|ZP_02469276.1| polypeptide deformylase [Burkholderia pseudomallei B7210]
 gi|167892270|ref|ZP_02479672.1| polypeptide deformylase [Burkholderia pseudomallei 7894]
 gi|167900763|ref|ZP_02487968.1| polypeptide deformylase [Burkholderia pseudomallei NCTC 13177]
 gi|167908987|ref|ZP_02496078.1| polypeptide deformylase [Burkholderia pseudomallei 112]
 gi|167917029|ref|ZP_02504120.1| polypeptide deformylase [Burkholderia pseudomallei BCC215]
 gi|254188218|ref|ZP_04894730.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254258214|ref|ZP_04949268.1| peptide deformylase [Burkholderia pseudomallei 1710a]
 gi|52208176|emb|CAH34107.1| peptide deformylase [Burkholderia pseudomallei K96243]
 gi|157935898|gb|EDO91568.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254216903|gb|EET06287.1| peptide deformylase [Burkholderia pseudomallei 1710a]
          Length = 167

 Score =  213 bits (543), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|223041757|ref|ZP_03611950.1| peptide deformylase [Actinobacillus minor 202]
 gi|240948040|ref|ZP_04752457.1| peptide deformylase [Actinobacillus minor NM305]
 gi|223017441|gb|EEF15859.1| peptide deformylase [Actinobacillus minor 202]
 gi|240297656|gb|EER48133.1| peptide deformylase [Actinobacillus minor NM305]
          Length = 170

 Score =  213 bits (543), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+  ++ ++   ID+M + MY  +GIGLAA Q+ VL R++ 
Sbjct: 1   MAVLEVVLYPDENLAKVCEPVAVVDDELNRFIDDMFDTMYEHEGIGLAAPQVDVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    + N +V INP+II  S +  + +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIE--GDKTNQVVLINPEIIESSGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             +  ADGL A C+QHE+DHLNGILF+DHLS LKR  I +KM KL + 
Sbjct: 118 EVVYDADGLFAICIQHEIDHLNGILFVDHLSPLKRQRIKEKMVKLKKQ 165


>gi|172062105|ref|YP_001809757.1| peptide deformylase [Burkholderia ambifaria MC40-6]
 gi|171994622|gb|ACB65541.1| peptide deformylase [Burkholderia ambifaria MC40-6]
          Length = 167

 Score =  213 bits (543), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISE--EKNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|149375618|ref|ZP_01893387.1| polypeptide deformylase [Marinobacter algicola DG893]
 gi|149360020|gb|EDM48475.1| polypeptide deformylase [Marinobacter algicola DG893]
          Length = 167

 Score =  213 bits (543), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR +++P++++  +   LID+M E MY   GIGLAA Q+ V  +++V+
Sbjct: 1   MILDILEYPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +   +  P VFINP++     +    QEGCLS+P +  DV R     +R +  + + 
Sbjct: 61  DLSE--DKSEPRVFINPEVEVLEGELEEMQEGCLSVPGFYEDVSRIEHCMIRAIGRDGKP 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I A GLLA C+QHE+DHLNG LF+D+LS LKR  I KK+ KL +
Sbjct: 119 FEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLHK 164


>gi|171319440|ref|ZP_02908545.1| peptide deformylase [Burkholderia ambifaria MEX-5]
 gi|171095332|gb|EDT40313.1| peptide deformylase [Burkholderia ambifaria MEX-5]
          Length = 167

 Score =  213 bits (543), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+II  SD+  VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISE--EKNELRAFINPEIIWSSDEKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 AFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|93004869|ref|YP_579306.1| peptide deformylase [Psychrobacter cryohalolentis K5]
 gi|123386822|sp|Q1QET1|DEF_PSYCK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|92392547|gb|ABE73822.1| peptide deformylase [Psychrobacter cryohalolentis K5]
          Length = 184

 Score =  213 bits (543), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR ++ P++++ ++I  LI +M+E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSYPDPRLRTIATPVKEVTAEIKTLITDMIETMYDAQGIGLAASQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   + +P VFINPK+    ++   Y+EGCLS+PD    V+R   + +  +D N  
Sbjct: 61  MDLSE--DKDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 +GLLA C+QHE+DHLNG++F+D+LSRLK+     K+ K++++R+
Sbjct: 119 KIDEEVEGLLAVCIQHEMDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168


>gi|170697716|ref|ZP_02888803.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
 gi|170137331|gb|EDT05572.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
          Length = 167

 Score =  213 bits (543), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISE--EKNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 SFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|294638020|ref|ZP_06716280.1| peptide deformylase [Edwardsiella tarda ATCC 23685]
 gi|291088812|gb|EFE21373.1| peptide deformylase [Edwardsiella tarda ATCC 23685]
          Length = 171

 Score =  213 bits (543), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 112/169 (66%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRTIAKPVNEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++    +  + +EGCLS+P+ RA V R+  ITVR +D + +
Sbjct: 61  IDISE--NRDQRLVLINPELLQKGGETGI-EEGCLSVPEQRALVPRAETITVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + +
Sbjct: 118 PFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|71276449|ref|ZP_00652725.1| Formylmethionine deformylase [Xylella fastidiosa Dixon]
 gi|71901278|ref|ZP_00683377.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|170731000|ref|YP_001776433.1| peptide deformylase [Xylella fastidiosa M12]
 gi|238687947|sp|B0U4M4|DEF_XYLFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71162765|gb|EAO12491.1| Formylmethionine deformylase [Xylella fastidiosa Dixon]
 gi|71728969|gb|EAO31101.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|167965793|gb|ACA12803.1| Peptide deformylase [Xylella fastidiosa M12]
          Length = 170

 Score =  213 bits (543), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +V+D+ +   +  PMVFINP+I+T   D  V+QEGCLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVVDVSE--EKNAPMVFINPEIVTREGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K  +
Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167


>gi|145631964|ref|ZP_01787717.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
           R3021]
 gi|144982378|gb|EDJ89955.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
           R3021]
 gi|309973885|gb|ADO97086.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2846]
          Length = 169

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N  V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|238758793|ref|ZP_04619967.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236]
 gi|238703090|gb|EEP95633.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236]
          Length = 170

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + VR +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|332976314|gb|EGK13171.1| peptide deformylase [Psychrobacter sp. 1501(2011)]
          Length = 176

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 109/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR ++ P++ +++DI  LI +M+E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSYPDPRLRTIAEPVKTVDADIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL ++     P VFINPKI    +D   Y+EGCLS+PD    V+R   + +  +D + +
Sbjct: 61  MDLSENNDS--PRVFINPKITPLVEDKKPYEEGCLSVPDVYDSVERPVKVKIEALDGDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+GLLA C+QHE+DHLNG+LF+D+LS LK+     K+ K ++ R+
Sbjct: 119 PFEEIAEGLLAVCIQHEMDHLNGVLFVDYLSSLKQTRARDKVRKYLKTRE 168


>gi|186474806|ref|YP_001856276.1| peptide deformylase [Burkholderia phymatum STM815]
 gi|184191265|gb|ACC69230.1| peptide deformylase [Burkholderia phymatum STM815]
          Length = 167

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+EK++  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEKVDDRIRKLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D         FINP+I+  SD+  +++EGCLS+P    +V+R+  + VR M+   +
Sbjct: 61  IDVSDTHEE--LRAFINPEILWSSDERKIHEEGCLSVPGIYDNVERAEKVRVRAMNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIKSKMKKLA 164


>gi|262277954|ref|ZP_06055747.1| peptide deformylase [alpha proteobacterium HIMB114]
 gi|262225057|gb|EEY75516.1| peptide deformylase [alpha proteobacterium HIMB114]
          Length = 171

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 78/157 (49%), Positives = 109/157 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PDPILR+ S  + K+++DI  L+DNMLE MY   GIGLAA Q+G+L +++V
Sbjct: 1   MSVLEILKEPDPILRKKSDEVSKVDNDIRALMDNMLETMYQAPGIGLAAPQVGILKKVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P+   NPKII  SD+ S  +EGCLSIP Y A+V R     ++Y+D + +
Sbjct: 61  IDLAKEDEPKKPLFIANPKIIWKSDELSSREEGCLSIPGYFAEVVRPTKCKLQYLDYDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            Q I A+ LL+TC+QHE+DH +G+LFID+LS+LK+DM
Sbjct: 121 QQEIEAEDLLSTCIQHEVDHCDGVLFIDYLSKLKKDM 157


>gi|212632966|ref|YP_002309491.1| peptide deformylase [Shewanella piezotolerans WP3]
 gi|212554450|gb|ACJ26904.1| Polypeptide deformylase [Shewanella piezotolerans WP3]
          Length = 170

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++PI + N+ +   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MSLLKVLRFPDERLRTVAKPITEFNAALQTQIDDMFETMYEEKGIGLAATQVDFHQQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFIN +II  S DF   +EGCLS+P   A V R+ F+T++ +D +  
Sbjct: 61  MDLQDEIDR--PKVFINLEIIAKSGDF-CNEEGCLSVPGIYAKVDRAEFVTIKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GL A CLQHELDHL G LF+D+LS LKR  I +K+ K  +L 
Sbjct: 118 EFTLEAEGLFAICLQHELDHLAGKLFVDYLSPLKRQRIKQKLEKAARLE 166


>gi|297537405|ref|YP_003673174.1| peptide deformylase [Methylotenera sp. 301]
 gi|297256752|gb|ADI28597.1| peptide deformylase [Methylotenera sp. 301]
          Length = 166

 Score =  213 bits (542), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P++++++ I  LID+M E MY   GIGLAA Q+    +L++
Sbjct: 1   MAILDILNYPDPRLHKVAKPVKEVDASIRRLIDDMRETMYDAPGIGLAATQVDQHIQLLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   + +  VFINPKII  S     Y+EGCLS+P     V R+  +TV  +D N +
Sbjct: 61  IDTSET--KDHLQVFINPKIIEKSG-VQDYEEGCLSVPGVYETVTRAEKVTVEALDYNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLL+ C+QHE+DHL G +F+++LS LKR  I  KM KL + +
Sbjct: 118 PFTLKAEGLLSICIQHEMDHLLGKVFVEYLSPLKRSRIKNKMLKLTRHK 166


>gi|303326112|ref|ZP_07356555.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
 gi|302864028|gb|EFL86959.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
          Length = 172

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 1/170 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +PDP L++   P+ ++  +I  L  +MLE MY+  G+GLAA Q+G   R++V+
Sbjct: 1   MILDIVTYPDPRLKQPCEPVTEVTDEIRKLAADMLETMYAAPGVGLAAPQVGRNIRMLVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQ 120
           D       K P V INP +    +D    QEGCLS+P +YRADV R + + ++  D +  
Sbjct: 61  DPAGKDEDKQPRVLINPVLELSGEDVVSEQEGCLSVPLNYRADVPRKSRVLLKATDLDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                     A  +QHE DHL+GILFID +SRL+R +   K+ K ++ ++
Sbjct: 121 GIEEDLTDFPAIIIQHEADHLDGILFIDKISRLRRTLYDSKVKKWLKRKN 170


>gi|94499926|ref|ZP_01306462.1| peptide deformylase [Oceanobacter sp. RED65]
 gi|94428127|gb|EAT13101.1| peptide deformylase [Oceanobacter sp. RED65]
          Length = 171

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+E++      LID+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MAILEILEFPDTRLRTIAKPVEEVTDAHRKLIDDMFETMYDCPGIGLAATQVNVHEQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   R  P VFINPK+     +    QEGCLS+P +  DV+R     +  +D N Q
Sbjct: 61  MDISE--DRSEPHVFINPKVTVLDGEPEKMQEGCLSVPGFYEDVERIEHCKIEALDRNGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A GLLA C+QHE+DHLNG LF+D+LS  KRD I KK+ K  +L
Sbjct: 119 PYELEARGLLAVCIQHEMDHLNGKLFVDYLSTTKRDRIRKKLEKQHRL 166


>gi|84622203|ref|YP_449575.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161899019|ref|YP_199224.2| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84366143|dbj|BAE67301.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 170

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           MV  P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D   +  P VF+NP+I++   +  + QEGCLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSD--EKNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|197121178|ref|YP_002133129.1| peptide deformylase [Anaeromyxobacter sp. K]
 gi|196171027|gb|ACG72000.1| peptide deformylase [Anaeromyxobacter sp. K]
          Length = 185

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V++P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VI
Sbjct: 1   MVREIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    +   Y EGCLSIP    DV R A + VR +D   + 
Sbjct: 61  DTSPRQEGQTLIHLVNPEIVRGEGEL-TYTEGCLSIPGEAEDVDRFARVWVRALDRQGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + A+GLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|94312496|ref|YP_585706.1| peptide deformylase [Cupriavidus metallidurans CH34]
 gi|93356348|gb|ABF10437.1| formylmethionine deformylase [Cupriavidus metallidurans CH34]
          Length = 168

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L +V++P+E ++  I  L+ +M E MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLDILTYPDPRLHKVAKPVEVVDDRIRQLVKDMAETMYEAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   MVFINP++   S++  V++EGCLS+P+    V+R   + VR +D   +
Sbjct: 61  IDISES--RDELMVFINPEVTWASENRKVWEEGCLSVPEVYDRVERPDRVKVRALDEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL+G +F+++LS LK   I  K+ K V+ R
Sbjct: 119 AFELDADDLLAVCIQHEIDHLDGKVFVEYLSPLKLQRIKSKLQKRVRSR 167


>gi|298501230|ref|ZP_07011029.1| peptide deformylase [Vibrio cholerae MAK 757]
 gi|297540102|gb|EFH76164.1| peptide deformylase [Vibrio cholerae MAK 757]
          Length = 206

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 38  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 97

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 98  IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 154

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 155 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 204


>gi|15837528|ref|NP_298216.1| peptide deformylase [Xylella fastidiosa 9a5c]
 gi|28199634|ref|NP_779948.1| peptide deformylase [Xylella fastidiosa Temecula1]
 gi|182682379|ref|YP_001830539.1| peptide deformylase [Xylella fastidiosa M23]
 gi|54036955|sp|P63918|DEF_XYLFT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040743|sp|P63917|DEF_XYLFA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238691097|sp|B2I8S4|DEF_XYLF2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|9105847|gb|AAF83736.1|AE003931_13 polypeptide deformylase [Xylella fastidiosa 9a5c]
 gi|28057749|gb|AAO29597.1| polypeptide deformylase [Xylella fastidiosa Temecula1]
 gi|182632489|gb|ACB93265.1| peptide deformylase [Xylella fastidiosa M23]
 gi|307578661|gb|ADN62630.1| peptide deformylase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 170

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 81/170 (47%), Positives = 113/170 (66%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +   +  PMVFINP+I+T   D  V+QEGCLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVIDVSE--EKNVPMVFINPEIVTREGD-QVFQEGCLSVPGIHADVTRALSIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K  +
Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167


>gi|152977798|ref|YP_001343427.1| peptide deformylase [Actinobacillus succinogenes 130Z]
 gi|150839521|gb|ABR73492.1| peptide deformylase [Actinobacillus succinogenes 130Z]
          Length = 183

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V+ P+ + N ++   ID+M + MY  +GIGLAA Q+ V  R++ 
Sbjct: 13  MALLNVLIYPDERLKTVAAPVTEFNDELQTFIDDMFDTMYQEEGIGLAATQVDVHKRVIT 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     +   +V INP+++    +  + +EGCLS+P +R  V R   ITV+ ++   +
Sbjct: 73  IDIS--GEKNEQLVLINPELLDSEGETGI-EEGCLSLPGFRGFVPRKEKITVKALNRYGE 129

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              ++ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ K  + 
Sbjct: 130 EFTLHADGLLAICIQHEMDHLNGIVFADYLSPLKRNRMKEKLVKYQRQ 177


>gi|307251005|ref|ZP_07532930.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306856945|gb|EFM89076.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 170

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    + N +V INP+I+    +  + +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIE--GDKTNQVVLINPEILGSCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             I  ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL +  +
Sbjct: 118 EVIYEADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQIE 167


>gi|170734476|ref|YP_001766423.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
 gi|254246863|ref|ZP_04940184.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184]
 gi|124871639|gb|EAY63355.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184]
 gi|169817718|gb|ACA92301.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
          Length = 167

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+I+  SD   +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSE--EKNELRAFINPEIVWSSDAKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|300721398|ref|YP_003710669.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
 gi|297627886|emb|CBJ88432.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
          Length = 170

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 115/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  +ID+M E MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLHYPDERLRTIAKPVEKVDAEIQRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   RK  +V INP+++  S +  + +EGCLS+P+ R  V R   I ++ +D + Q
Sbjct: 61  IDVSE--DRKQLLVLINPELLNESGETGI-EEGCLSVPEQRGFVPRFEQIKIKALDYHGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKIDRLR 166


>gi|260583339|ref|ZP_05851112.1| peptide deformylase [Haemophilus influenzae NT127]
 gi|260093610|gb|EEW77525.1| peptide deformylase [Haemophilus influenzae NT127]
          Length = 169

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N  V INP+I+    +  + +EGCLSIP +RA V R   + VR +D + +
Sbjct: 61  IDVE--GDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|183600719|ref|ZP_02962212.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827]
 gi|188019699|gb|EDU57739.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827]
          Length = 174

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 112/169 (66%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNVLHYPDERLRTIAKPVEKVDAEIQQIVDDMFETMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+++  S +  + +EGCLSIP+    V R+  + VR +D N  
Sbjct: 61  IDVSET--RDQRLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEHVKVRALDYNGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL ++R
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRMR 166


>gi|260774554|ref|ZP_05883467.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
 gi|260610460|gb|EEX35666.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
          Length = 170

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDVSDS--RDQPMVLINPQIIEKRGEDGI-EEGCLSVPGSRALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFNE 167


>gi|146291135|ref|YP_001181559.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|145562825|gb|ABP73760.1| peptide deformylase [Shewanella putrefaciens CN-32]
          Length = 170

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFINP+II+ S DF   +EGCLS+P   A V R+ F+TV+ +D N  
Sbjct: 61  MDLQDEVER--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|134297376|ref|YP_001121111.1| peptide deformylase [Burkholderia vietnamiensis G4]
 gi|134140533|gb|ABO56276.1| peptide deformylase [Burkholderia vietnamiensis G4]
          Length = 167

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     FINP+I+  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSE--EKNELRAFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNERGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 PFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|206889750|ref|YP_002248176.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|238058215|sp|B5YIL7|DEF_THEYD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|206741688|gb|ACI20745.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 165

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/163 (43%), Positives = 104/163 (63%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PD +L++ +  I +IN D+  LIDNM+E MY+ +GIGLAA Q+GVL RL+V
Sbjct: 1   MAILEIKKYPDEVLKKKAETISEINGDLQKLIDNMIETMYNANGIGLAAPQVGVLKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       ++ +V INP+I   S+   + +EGCLS+P +   +KR   + V+ +D N +
Sbjct: 61  VDTSPREQNQSLIVLINPEITD-SEGEILSEEGCLSLPGFTTRLKRKERVIVKGLDRNGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I A GLLA  LQHE+DHL+GIL ID +S LKR++  KK  
Sbjct: 120 EIEIEATGLLARALQHEIDHLDGILLIDKISPLKRELFRKKFK 162


>gi|238754205|ref|ZP_04615563.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
 gi|238707701|gb|EEQ00061.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
          Length = 170

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  +++V
Sbjct: 1   MSVLQVLHYPDERLRKVATPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  I +R +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKIKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLDKLAKL 165


>gi|217968557|ref|YP_002353791.1| peptide deformylase [Thauera sp. MZ1T]
 gi|217505884|gb|ACK52895.1| peptide deformylase [Thauera sp. MZ1T]
          Length = 167

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V+ P+ +++ +I  LI +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHTVAAPVGRVDDEIRRLIADMAETMYEAPGIGLAATQVDVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +   M  INP+I+  S +  V +EGCLS+P     V R+  + VR ++   +
Sbjct: 61  IDVSE--DKSGLMALINPEILERSGE-QVCEEGCLSVPGIYEKVSRAERVKVRALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHE+DHL+G +F+++LS+LK   I  K++K  ++
Sbjct: 118 SFEFEADGLLAVCVQHEIDHLDGKVFVEYLSQLKLGRIKSKLAKKARI 165


>gi|332304409|ref|YP_004432260.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171738|gb|AEE20992.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 169

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/168 (49%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+EKI+  I  LI +MLE M   +GIGLAA QI V  R+VV
Sbjct: 1   MAILDVLRFPDERLRTVAAPVEKIDGTIKTLISDMLETMKDENGIGLAATQINVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   + NP VFINP+I T  D  ++ +EGCLS+P+  A V+R+  ITV  +D N  
Sbjct: 61  IDVSEK--QDNPQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAETITVNALDENGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 118 AFTLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165


>gi|322831106|ref|YP_004211133.1| peptide deformylase [Rahnella sp. Y9602]
 gi|321166307|gb|ADW72006.1| peptide deformylase [Rahnella sp. Y9602]
          Length = 170

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQILHFPDERLRITAKPVKEVNAEIQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIPD RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPDQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +KM K+ +L
Sbjct: 118 TFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKMAKL 165


>gi|308047745|ref|YP_003911311.1| peptide deformylase [Ferrimonas balearica DSM 9799]
 gi|307629935|gb|ADN74237.1| peptide deformylase [Ferrimonas balearica DSM 9799]
          Length = 171

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPD  LR V+ P+      +  L+D+M + MY   GIGLAA QI    +++V
Sbjct: 1   MAVREVLRFPDERLRTVAEPVTDFGPALQQLVDDMFDTMYEERGIGLAATQINEHVQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P VFINPKII     F   +EGCLS+P   A V+R+  +     D    
Sbjct: 61  MDHSE--DRSEPKVFINPKIIEEKGHF-TNEEGCLSVPGVYAKVERAEHVVFEAQDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LL+ C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 PFTVEADELLSICIQHEMDHLLGKLFVDYLSPLKRQRIKQKLEKQARL 165


>gi|209965583|ref|YP_002298498.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
 gi|209959049|gb|ACI99685.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
          Length = 173

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 115/170 (67%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I PD  LR+ + P+  ++  +  L+D+MLE MY   GIGLAA Q+GVL R++V
Sbjct: 1   MSLLNILIVPDARLRQTAEPVANVDGRVARLMDDMLETMYKAPGIGLAAPQVGVLERVIV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D+ +       P++  NP+II  SD+ +  QEGCLSIPD  ADV R   + VRY+D + 
Sbjct: 61  MDIAERKTEAPTPILMANPEIIARSDELATAQEGCLSIPDIYADVTRPRQVRVRYVDRDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + + + ADGL ATC+QHE+DHLNG+LF+D+LS LKR M+ +++ K+ + +
Sbjct: 121 EVRELDADGLTATCVQHEIDHLNGVLFVDYLSALKRSMLLRRLQKMQRNK 170


>gi|40062663|gb|AAR37584.1| polypeptide deformylase [uncultured marine bacterium 313]
          Length = 185

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 120/181 (66%), Gaps = 11/181 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P+ +LR  S  +++++ D+  L+++MLE MY+  GIGLAA+Q+GV  R++V
Sbjct: 1   MALRKILTEPNKLLREKSLTVKEVDEDLQKLMNDMLETMYAAPGIGLAAIQVGVPKRVIV 60

Query: 61  IDL-----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D+           +    RKNP+ F+NP+IIT S + S Y+EGCLS+P   A++ R   
Sbjct: 61  LDIGWRDKPESTNDEKQDERKNPIYFVNPEIITKSTNNSTYEEGCLSVPGQFAEIDRPDK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             ++Y+D   Q + + A+G+ ATC+QHE+DHL GILFID+LS+LK+ MI KK++K  +  
Sbjct: 121 CHIKYLDYYGQPKELMAEGMFATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAKQKEQL 180

Query: 170 D 170
           D
Sbjct: 181 D 181


>gi|303256332|ref|ZP_07342348.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
 gi|330999027|ref|ZP_08322752.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
 gi|302861061|gb|EFL84136.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
 gi|329575769|gb|EGG57295.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
          Length = 175

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L   +  + + +  +  L  +M E MY   G+GLAA Q+    RL+V
Sbjct: 1   MALLPILKYPDPRLATKAAVVTEFDDKLKQLAADMAETMYKAPGVGLAATQVDRHIRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   + +  V +NP+++  S++   ++EGCLS+P     V R A + V+  D    
Sbjct: 61  IDITE--EKNDLKVLVNPELVESSEETKPWEEGCLSLPGIYDKVTRPAKVKVKAQDLEGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              +  DGLLA C+QHE+DHL G +F+DHLS LK+  I  K+ K+
Sbjct: 119 FFELECDGLLAVCVQHEMDHLEGTVFVDHLSMLKKQRIRHKIRKM 163


>gi|239818071|ref|YP_002946981.1| peptide deformylase [Variovorax paradoxus S110]
 gi|239804648|gb|ACS21715.1| peptide deformylase [Variovorax paradoxus S110]
          Length = 173

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 110/169 (65%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ +PD  L  V++P++ +++ I  L+ +MLE MY   GIGLAA Q+ V  RLVV
Sbjct: 1   MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDASGIGLAATQVDVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+II  SD+  + +EGCLS+P     V RS  + V+ +D N +
Sbjct: 61  IDVSE--ERNEPLVLINPEIIWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + I A+GLLA C+QHELDHL G +F+++LS LKR+ I  K+ K  +  
Sbjct: 119 LRTIEAEGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQQREE 167


>gi|126449977|ref|YP_001081879.1| polypeptide deformylase [Burkholderia mallei NCTC 10247]
 gi|251767985|ref|ZP_02269083.2| peptide deformylase [Burkholderia mallei PRL-20]
 gi|254177135|ref|ZP_04883792.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|126242847|gb|ABO05940.1| peptide deformylase [Burkholderia mallei NCTC 10247]
 gi|160698176|gb|EDP88146.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|243061150|gb|EES43336.1| peptide deformylase [Burkholderia mallei PRL-20]
          Length = 179

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 13  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 73  IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 131 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177


>gi|120596857|ref|YP_961431.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|120556950|gb|ABM22877.1| peptide deformylase [Shewanella sp. W3-18-1]
          Length = 170

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFINP+II+ S DF   +EGCLS+P   A V R+ F+TV+ +D N  
Sbjct: 61  MDLQDEIER--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|260914694|ref|ZP_05921160.1| peptide deformylase [Pasteurella dagmatis ATCC 43325]
 gi|260631293|gb|EEX49478.1| peptide deformylase [Pasteurella dagmatis ATCC 43325]
          Length = 170

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 112/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++++PD  L+ V++P+E++N  I  ++D+M E MY  +GIGLAA Q+ +  R++ 
Sbjct: 1   MAKLNVLVYPDDRLKIVAKPVEEVNDKIREIVDDMFETMYHEEGIGLAATQVDIHQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N  V INP+II    +  + +EGCLS+P +R  V R   +TV+ +D N +
Sbjct: 61  IDVEGT--KENQYVLINPEIIESCGETGI-EEGCLSLPGFRGFVPRKEKVTVKALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGI+F D+LS LKR  + +K+ KL + 
Sbjct: 118 EYTLNADGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLVKLQKQ 165


>gi|238792969|ref|ZP_04636599.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909]
 gi|238727823|gb|EEQ19347.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909]
          Length = 170

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + VR +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|332285819|ref|YP_004417730.1| peptide deformylase [Pusillimonas sp. T7-7]
 gi|330429772|gb|AEC21106.1| peptide deformylase [Pusillimonas sp. T7-7]
          Length = 170

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+++++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKVAKPVQEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +  + +V INP+I+  SD+  VY+EGCLS+P    +V+RSA I VR ++   +
Sbjct: 61  IDVSEDGN--DLIVLINPEILWKSDEVQVYEEGCLSVPGVYDEVERSARIRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA C+QHELDHL G +F+++LS LK++ I  ++ K  + 
Sbjct: 119 PYEFDAEGLLAVCVQHELDHLLGKVFVEYLSVLKQNRIKTRLRKQERE 166


>gi|95928563|ref|ZP_01311310.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
 gi|95135353|gb|EAT17005.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
          Length = 171

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/171 (42%), Positives = 107/171 (62%), Gaps = 6/171 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PD +L  +S PI  ++ +I  L  +M E MY+  G+GLAA Q+G+  RL+V
Sbjct: 1   MSLLKIYHYPDAVLAEMSEPIAVVDDEIRQLAADMAETMYAAPGVGLAAPQVGISRRLIV 60

Query: 61  IDLQDHAHRKNPMVF--INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D       +NP +   +NP+I+    D S  +EGCLS+P Y A VKRS+++ VRY+D +
Sbjct: 61  LDC---GGEENPELIKAVNPEILERQGD-SCEEEGCLSVPGYYAAVKRSSWVKVRYVDMD 116

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q     A+GLLA C QHE+DHL+G LF+D LS LK+ M  KK  K+++ +
Sbjct: 117 GQTVEREAEGLLAICFQHEIDHLDGKLFVDRLSSLKKGMFRKKYPKILEQQ 167


>gi|157372744|ref|YP_001480733.1| peptide deformylase [Serratia proteamaculans 568]
 gi|167012065|sp|A8GKG5|DEF_SERP5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157324508|gb|ABV43605.1| peptide deformylase [Serratia proteamaculans 568]
          Length = 169

 Score =  212 bits (540), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 116/168 (69%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V+ P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHYPDDRLRKVAAPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+A + +R +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAAAVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|319424441|gb|ADV52515.1| peptide deformylase [Shewanella putrefaciens 200]
          Length = 170

 Score =  212 bits (540), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFINP+II+ S DF   +EGCLS+P   A V R+ F+TV+ +D N  
Sbjct: 61  MDLQDEVER--PKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ A+ L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEANELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|304412735|ref|ZP_07394338.1| peptide deformylase [Shewanella baltica OS183]
 gi|307305800|ref|ZP_07585546.1| peptide deformylase [Shewanella baltica BA175]
 gi|304348945|gb|EFM13360.1| peptide deformylase [Shewanella baltica OS183]
 gi|306911293|gb|EFN41719.1| peptide deformylase [Shewanella baltica BA175]
          Length = 170

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R    VFINP+II  S DF   +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVERH--KVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|167621968|ref|YP_001672262.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
 gi|167351990|gb|ABZ74603.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
          Length = 199

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++PI + N+ +   ID+M E MY   GIGLA+ Q+   ++L+V
Sbjct: 30  MSLLKVLQFPDERLRTVAKPIAEFNAALQTQIDDMFETMYEEKGIGLASTQVNYHHQLIV 89

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFIN +I+  S DF   +EGCLS+P   A V R+ F+T++ +D +  
Sbjct: 90  MDLQDDVER--PKVFINLEIVAKSGDF-CNEEGCLSVPGVYAKVDRAEFVTIKALDRDGN 146

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGL A CLQHELDHL+G LF+D+LS LKR  I +K+ K  +L 
Sbjct: 147 EFSLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARLE 195


>gi|270264340|ref|ZP_06192606.1| peptide deformylase [Serratia odorifera 4Rx13]
 gi|270041476|gb|EFA14574.1| peptide deformylase [Serratia odorifera 4Rx13]
          Length = 169

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V+ P++++N+ I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHYPDERLRKVAAPVKEVNATIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+A + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAANVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|123444064|ref|YP_001008034.1| peptide deformylase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|238788878|ref|ZP_04632668.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641]
 gi|332163227|ref|YP_004299804.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|158512897|sp|A1JRZ1|DEF_YERE8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122091025|emb|CAL13908.1| polypeptide deformylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238722905|gb|EEQ14555.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641]
 gi|318607709|emb|CBY29207.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325667457|gb|ADZ44101.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330861818|emb|CBX71990.1| peptide deformylase [Yersinia enterocolitica W22703]
          Length = 170

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|239993910|ref|ZP_04714434.1| peptide deformylase [Alteromonas macleodii ATCC 27126]
          Length = 169

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV
Sbjct: 1   MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +  P VFINP+II       + +EGCLS+P   A V+R+  ITV+ +D N +
Sbjct: 61  MDVSE--DQNEPRVFINPEIIRKDGST-ISEEGCLSVPGNYAKVERAESITVKALDQNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 SFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165


>gi|238783197|ref|ZP_04627223.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970]
 gi|238715993|gb|EEQ07979.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970]
          Length = 170

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 113/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  D LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELETDDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|53724672|ref|YP_101982.1| peptide deformylase [Burkholderia mallei ATCC 23344]
 gi|67642453|ref|ZP_00441209.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
 gi|121600699|ref|YP_994101.1| peptide deformylase [Burkholderia mallei SAVP1]
 gi|254208639|ref|ZP_04914987.1| polypeptide deformylase [Burkholderia mallei JHU]
 gi|254360307|ref|ZP_04976577.1| polypeptide deformylase [Burkholderia mallei 2002721280]
 gi|52428095|gb|AAU48688.1| polypeptide deformylase [Burkholderia mallei ATCC 23344]
 gi|121229509|gb|ABM52027.1| polypeptide deformylase [Burkholderia mallei SAVP1]
 gi|147750515|gb|EDK57584.1| polypeptide deformylase [Burkholderia mallei JHU]
 gi|148029547|gb|EDK87452.1| polypeptide deformylase [Burkholderia mallei 2002721280]
 gi|238523609|gb|EEP87046.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
          Length = 167

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|323524423|ref|YP_004226576.1| peptide deformylase [Burkholderia sp. CCGE1001]
 gi|323381425|gb|ADX53516.1| peptide deformylase [Burkholderia sp. CCGE1001]
          Length = 167

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSDA--HDQLLAFINPEIIWSSDEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|109896355|ref|YP_659610.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
 gi|109698636|gb|ABG38556.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
          Length = 169

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 110/168 (65%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P++KI+S I  L+ +MLE M   +GIGLAA QI V  R+VV
Sbjct: 1   MAILDVLRFPDERLRTVATPVDKIDSSIKTLVSDMLETMKDENGIGLAATQINVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  P VFINP+I T  D  ++ +EGCLS+P+  A V+R+  +TV+ +D N  
Sbjct: 61  IDVSE--EQDKPQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAEKVTVKALDENGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 118 AFTLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165


>gi|113460190|ref|YP_718247.1| peptide deformylase [Haemophilus somnus 129PT]
 gi|123131908|sp|Q0I181|DEF_HAES1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|112822233|gb|ABI24322.1| peptide deformylase [Haemophilus somnus 129PT]
          Length = 170

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V+ P+   + ++   IDNM E MY  +GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N +V INP+I+    +  + +EGCLS+P  R  V R   + V+  +   +
Sbjct: 61  IDIEGT--KENQIVLINPEILESFGETGI-EEGCLSLPGLRGFVPRKETVKVKAQNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             ++ ADGLLA C+QHE+DHLNGI+F DHLS LKR  + +K+ KL + 
Sbjct: 118 DFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQKQ 165


>gi|148651859|ref|YP_001278952.1| peptide deformylase [Psychrobacter sp. PRwf-1]
 gi|172048436|sp|A5WBG1|DEF_PSYWF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148570943|gb|ABQ93002.1| peptide deformylase [Psychrobacter sp. PRwf-1]
          Length = 176

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 108/170 (63%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR ++ PI+ ++++I  LI +M+E MY   GIGLAA Q+    +L+V
Sbjct: 1   MAILPILSYPDPRLRTIAEPIKTVDAEIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL ++     P VFINPK+    +D   Y+EGCLS+PD    V R   + +  +D +  
Sbjct: 61  MDLSENNDS--PRVFINPKVTPLVEDKKPYEEGCLSVPDVYDSVDRPVKVKIEALDADGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+GLLA C+QHE+DHLNG+LF+D+LSRLK+     K+ K ++ R+
Sbjct: 119 AFEEIAEGLLAVCIQHEMDHLNGVLFVDYLSRLKQTRARDKVKKYLKTRE 168


>gi|119896391|ref|YP_931604.1| peptide deformylase [Azoarcus sp. BH72]
 gi|119668804|emb|CAL92717.1| probable peptide deformylase [Azoarcus sp. BH72]
          Length = 167

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L R + P++ ++ D+  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHRRAAPVDTVDDDVRKLIDDMAETMYEAPGIGLAATQVDVHRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +   M  INP+I+    +  V +EGCLS+P     V R+  +TVR +D N  
Sbjct: 61  IDISE--DKSGLMALINPQILERDGE-QVCEEGCLSVPGVYEKVTRAERVTVRALDRNGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL+G +F+++LS LK   I  K++K  ++
Sbjct: 118 PFEVAAEGLLAVCIQHEIDHLDGKVFVEYLSPLKLGRIKSKLAKKARI 165


>gi|115372443|ref|ZP_01459752.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|310819504|ref|YP_003951862.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|115370656|gb|EAU69582.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|309392576|gb|ADO70035.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 173

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 111/169 (65%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++I+P P+L++ +RP+ K++  +  L+ +M E MY+ DG+GLAA Q+G+L R++V+
Sbjct: 1   MVREILIWPHPVLKQKARPVAKVDDAVRALVKDMFETMYAADGVGLAAPQVGILQRIIVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D         P+  INP+I+        Y EGCLSIP    DV R+A +TV+++D + Q 
Sbjct: 61  DTTPRQPDSKPLAMINPEIVGMEGAT-TYTEGCLSIPGEAEDVDRAAIVTVKFLDVDGQE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           Q +  D LLA  +QHE DHL+G +F+DH+S LKR++I K+M +L   R+
Sbjct: 120 QTLTCDDLLAIAVQHETDHLDGTVFVDHVSSLKREIIRKRMKRLKTERE 168


>gi|74316032|ref|YP_313772.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259]
 gi|74055527|gb|AAZ95967.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC
           25259]
          Length = 177

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PD  L  V++P+E +++ I  L+D+M E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MARLDILHYPDSRLHTVAKPVEAVDARIRKLVDDMAETMYAAPGIGLAATQVNVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R    VFINP+I+  S      +EGCLS+P     V R+  +TVR +D + +
Sbjct: 61  IDTSET--RDALRVFINPEIVAQSG-REESEEGCLSVPGVFDRVTRAERVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G +F+D+LS LKR+ I  K+ K  + 
Sbjct: 118 PFELEADGLLAVCIQHELDHLAGKVFVDYLSPLKRNRIKTKLLKQARE 165


>gi|253997897|ref|YP_003049960.1| peptide deformylase [Methylovorus sp. SIP3-4]
 gi|313199962|ref|YP_004038620.1| peptide deformylase [Methylovorus sp. MP688]
 gi|253984576|gb|ACT49433.1| peptide deformylase [Methylovorus sp. SIP3-4]
 gi|312439278|gb|ADQ83384.1| peptide deformylase [Methylovorus sp. MP688]
          Length = 166

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P++++N++I  LID+M E MY+  GIGLAA Q+ V  +++V
Sbjct: 1   MAILDILNYPDPRLYTVAKPVKEVNANIRRLIDDMAETMYAAPGIGLAATQVDVHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +    VFINPKI         Y+EGCLS+P    +V R+A +TV  +D N +
Sbjct: 61  MDLSEA--KNELRVFINPKITAKCGA-QDYEEGCLSVPGIYENVTRAAEVTVEALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             ++ A GLLA C+QHE+DHL G +F+D+LS LK++ I  K+ K  + R
Sbjct: 118 PFVLEAQGLLAVCIQHEMDHLLGKVFVDYLSPLKQNRIKTKLKKRQRDR 166


>gi|332139430|ref|YP_004425168.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
 gi|238693290|sp|B4S291|DEF_ALTMD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|327549452|gb|AEA96170.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 169

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV
Sbjct: 1   MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +  P VFINP+I        + +EGCLS+P   A V+R+  ITV+ +D N +
Sbjct: 61  MDVSE--DQNEPRVFINPEITRKDGST-ISEEGCLSVPGNYAKVERAEAITVKALDQNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 AFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165


>gi|78224529|ref|YP_386276.1| peptide deformylase [Geobacter metallireducens GS-15]
 gi|78195784|gb|ABB33551.1| peptide deformylase [Geobacter metallireducens GS-15]
          Length = 167

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 104/167 (62%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+PIL++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MVRTILTYPNPILKKKAVPVAVINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R   +V INP  +    + S  +EGCLS+P Y A+V R A + V+ ++ + + 
Sbjct: 61  DVSQREERPELIVCINPVFVHTEGE-SYEEEGCLSVPKYSANVHRHAKVVVKALNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               A+GLLA   QHE+DHL G+LF+DHLS LKR+M  KK  ++V+ 
Sbjct: 120 VTYRAEGLLAIAFQHEIDHLEGMLFVDHLSPLKREMFKKKYRRMVEE 166


>gi|237806929|ref|YP_002891369.1| peptide deformylase [Tolumonas auensis DSM 9187]
 gi|259645187|sp|C4L7Y4|DEF_TOLAT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|237499190|gb|ACQ91783.1| peptide deformylase [Tolumonas auensis DSM 9187]
          Length = 167

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/167 (48%), Positives = 115/167 (68%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ PIEKI SD+ ++I++M E MY  +GIGLAA Q+ +  RLVV
Sbjct: 1   MATLDVLRFPDERLRKIATPIEKITSDLEHIIEDMFETMYLEEGIGLAATQVNIHKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +  +R  PMVFINP++I    +  + +EGCLS+P+ RA V R+ +I VR +D + +
Sbjct: 61  VDTSE--NRDQPMVFINPELIEKRGETGI-EEGCLSVPECRAFVPRAEWIKVRALDRHGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I ADGLLA CLQHE+DHL G LF+D+LS LKR  I +K+ KL +
Sbjct: 118 PFEIEADGLLAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAR 164


>gi|317494307|ref|ZP_07952721.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917557|gb|EFV38902.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 169

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 114/169 (67%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++  +I  ++D+M + MY+ +GIGLAA Q+ V  R++V
Sbjct: 1   MAVLQVLHFPDERLRTVAQPVKEVTPEIQRIVDDMFDTMYAEEGIGLAATQVDVHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP++++   +  + +EGCLS+P++RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLSSDGETGI-EEGCLSVPEHRALVPRAERVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + +
Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|238797211|ref|ZP_04640712.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969]
 gi|238718848|gb|EEQ10663.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969]
          Length = 170

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|254293235|ref|YP_003059258.1| peptide deformylase [Hirschia baltica ATCC 49814]
 gi|254041766|gb|ACT58561.1| peptide deformylase [Hirschia baltica ATCC 49814]
          Length = 181

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 105/157 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  P+P+L+ VS+P++ +  +I  L+D+MLE MY   GIGLAA+QIG   R++V
Sbjct: 1   MTIRPILTVPNPLLKEVSKPVDAVTDEIRALMDDMLETMYDAPGIGLAAIQIGEPVRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D     NP  F+NP+I+   +    Y EGCLS+P+    ++R   + ++Y++   +
Sbjct: 61  MDIADKDEEPNPQYFVNPEILEKVEATVPYDEGCLSVPEIYETIERPERVQIKYLNYKGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
             I +A+GL ATC+QHE+DHL G LFID+LSRLKR  
Sbjct: 121 EVIEWAEGLYATCIQHEMDHLEGKLFIDYLSRLKRTR 157


>gi|258622990|ref|ZP_05718005.1| peptide deformylase [Vibrio mimicus VM573]
 gi|258584773|gb|EEW09507.1| peptide deformylase [Vibrio mimicus VM573]
          Length = 169

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  +ID+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|124385914|ref|YP_001028237.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|254203663|ref|ZP_04910023.1| polypeptide deformylase [Burkholderia mallei FMH]
 gi|124293934|gb|ABN03203.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|147745175|gb|EDK52255.1| polypeptide deformylase [Burkholderia mallei FMH]
          Length = 216

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 50  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 109

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 110 IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 167

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 168 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 214


>gi|56477100|ref|YP_158689.1| peptide deformylase [Aromatoleum aromaticum EbN1]
 gi|56313143|emb|CAI07788.1| N-formylmethionyl-tRNA deformylase 1 [Aromatoleum aromaticum EbN1]
          Length = 167

 Score =  211 bits (538), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + + P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKHAAPVAVVDDSIRQLVRDMAETMYEAPGVGLAATQVDVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R     FINP+I+  S +    +EGCLS+P     V R+  + VR +D   +
Sbjct: 61  IDVSE--DRSTLRAFINPEILEKSGE-QTCEEGCLSVPGVYEKVTRAERVKVRALDERGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL+G +F+++LS LK   I  +++K  ++
Sbjct: 118 PFELEAEGLLAVCIQHEIDHLDGRVFVEYLSPLKLGRIKARLAKKARI 165


>gi|91226303|ref|ZP_01261143.1| peptide deformylase [Vibrio alginolyticus 12G01]
 gi|262392831|ref|YP_003284685.1| peptide deformylase [Vibrio sp. Ex25]
 gi|91189314|gb|EAS75593.1| peptide deformylase [Vibrio alginolyticus 12G01]
 gi|262336425|gb|ACY50220.1| peptide deformylase [Vibrio sp. Ex25]
          Length = 172

 Score =  211 bits (538), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|261416784|ref|YP_003250467.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373240|gb|ACX75985.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325617|gb|ADL24818.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 179

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/171 (41%), Positives = 96/171 (56%), Gaps = 3/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ DP+LR+   PI +I  ++  L  +MLE MY   G GLAA QIG   RLVV
Sbjct: 1   MAILPIRIYGDPVLRKKCEPITEITPELRQLAKDMLETMYDAPGCGLAAPQIGKNIRLVV 60

Query: 61  IDLQ-DHAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID          P +  NP+     D  +V Y EGCLS+P+   +V R   +TVR+ D N
Sbjct: 61  IDTAIPDEEEPRPYIMFNPEWEAEPDAKNVDYDEGCLSLPEIFCNVVRPDRVTVRFFDIN 120

Query: 119 AQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + Q I+  +GL A C+QHE DHLNG LF+D +S   R M   K+ K+ + 
Sbjct: 121 GEAQEIHNCEGLFARCIQHECDHLNGDLFVDKISTSDRTMNQSKLRKMAKE 171


>gi|170694015|ref|ZP_02885171.1| peptide deformylase [Burkholderia graminis C4D1M]
 gi|170141087|gb|EDT09259.1| peptide deformylase [Burkholderia graminis C4D1M]
          Length = 167

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+I+  S++  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSDA--HDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGHVFVEYLSPLKQTRIKSKMKKLA 164


>gi|220915878|ref|YP_002491182.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953732|gb|ACL64116.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 185

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V+ P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VI
Sbjct: 1   MVREIVIWPDPILKEVAHPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    +   Y EGCLSIP    DV R A + VR +D + + 
Sbjct: 61  DTSPRQEGQTLIHLVNPEIVRGEGEL-TYTEGCLSIPGEAEDVDRFARVWVRALDYHGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + A+GLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|167561029|ref|ZP_02353945.1| peptide deformylase [Burkholderia oklahomensis EO147]
 gi|167568291|ref|ZP_02361165.1| peptide deformylase [Burkholderia oklahomensis C6786]
          Length = 167

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+   D   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSE--DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 SFEIDCEGLLAVCVQHEMDHLMGRVFVQYLSSLKQSRIKTKMKKLER 165


>gi|238763701|ref|ZP_04624660.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638]
 gi|238698003|gb|EEP90761.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638]
          Length = 170

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|94264678|ref|ZP_01288460.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93454909|gb|EAT05153.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 263

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/184 (38%), Positives = 106/184 (57%), Gaps = 19/184 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  +RP+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           I          D +D        A  +NP +V INP+++    +  V +EGCLS+ DY +
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            VKR A + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+
Sbjct: 191 KVKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250

Query: 163 SKLV 166
            K++
Sbjct: 251 KKII 254


>gi|84514541|ref|ZP_01001905.1| peptide deformylase [Loktanella vestfoldensis SKA53]
 gi|84511592|gb|EAQ08045.1| peptide deformylase [Loktanella vestfoldensis SKA53]
          Length = 173

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/169 (49%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L++V+ P+  I+ D+  L D+MLE MY   GIGLAA Q+ V+ R++V
Sbjct: 1   MTIRPILIHPDPRLKKVTAPVASIDDDLRRLADDMLETMYEAPGIGLAAPQVAVMRRVIV 60

Query: 61  IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D Q D      PMV INP+II  S+  SVY EGCLSIP+  A+V R A + V ++  + 
Sbjct: 61  MDCQKDAEATPEPMVLINPEIIWSSEATSVYDEGCLSIPEQYAEVTRPAEVEVAWLGLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + Q    DGL ATC+QHE+DHL+G LFID L  LKR MIT+KM KL + 
Sbjct: 121 KPQRARFDGLWATCVQHEIDHLDGKLFIDCLGPLKRQMITRKMQKLKRE 169


>gi|152981308|ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
 gi|151281385|gb|ABR89795.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
          Length = 178

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+   +  I  L+ +M E MY   G+GLAA Q+ V  +++V
Sbjct: 1   MSILNILRYPDPRLHKVAKPVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +         +INP+II  S +  VY EGCLS+P     V+R A + VR  D + +
Sbjct: 61  IDTSET--HTELRAYINPEIIWASPEMQVYDEGCLSVPGVYDGVERHAKVKVRAFDADGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G +F+++LS LKR+ I  KM K  + 
Sbjct: 119 QFELEADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERE 166


>gi|152994060|ref|YP_001338895.1| peptide deformylase [Marinomonas sp. MWYL1]
 gi|150834984|gb|ABR68960.1| peptide deformylase [Marinomonas sp. MWYL1]
          Length = 181

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR++++PI K   ++   ID+ML+ MY  +G+GLAA Q+   +RLVV
Sbjct: 11  MAVLTVLEYPDKRLRKIAKPITKFTDELQTKIDDMLDTMYDENGLGLAATQVDYHHRLVV 70

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P+VFINP+     D+ + +QEGCLS+P +   + R+A + V+ +D N +
Sbjct: 71  MDFSE--ERNEPIVFINPEFEVLDDEPNEFQEGCLSVPGFYEHIYRAAKVRVKALDRNGK 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  D L+A C+QHE+DHL+G L +D+L+ LKR+ I  K+ K  +L
Sbjct: 129 PFTLEVDELMAVCVQHEVDHLDGKLMVDYLTPLKRNRIKSKLEKAHKL 176


>gi|319796457|ref|YP_004158097.1| peptide deformylase [Variovorax paradoxus EPS]
 gi|315598920|gb|ADU39986.1| peptide deformylase [Variovorax paradoxus EPS]
          Length = 172

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 110/169 (65%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ +PD  L  V++P++ +++ I  L+ +MLE MY  +GIGLAA QI V  RLVV
Sbjct: 1   MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDAEGIGLAATQIDVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I   SD+  + +EGCLS+P     V RS  + V+ +D N +
Sbjct: 61  IDVSE--ERNKPIVLINPEITWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + I ADGLLA C+QHELDHL G +F+++LS LKR+ I  K+ K  +  
Sbjct: 119 MRTIEADGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQQREE 167


>gi|258626114|ref|ZP_05720965.1| peptide deformylase [Vibrio mimicus VM603]
 gi|262166814|ref|ZP_06034551.1| peptide deformylase [Vibrio mimicus VM223]
 gi|262172812|ref|ZP_06040490.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|258581640|gb|EEW06538.1| peptide deformylase [Vibrio mimicus VM603]
 gi|261893888|gb|EEY39874.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|262026530|gb|EEY45198.1| peptide deformylase [Vibrio mimicus VM223]
          Length = 169

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|262402048|ref|ZP_06078612.1| peptide deformylase [Vibrio sp. RC586]
 gi|262351694|gb|EEZ00826.1| peptide deformylase [Vibrio sp. RC586]
          Length = 169

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  +ID+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+  D N Q
Sbjct: 61  IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKAQDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKVKRFNE 167


>gi|255326017|ref|ZP_05367105.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
 gi|255296908|gb|EET76237.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
          Length = 228

 Score =  211 bits (537), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 9/171 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+VI  +P+L R + P+ + N ++  L+ +M E M +++G+GLAA QIGV  R+   
Sbjct: 40  AIRPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTY 99

Query: 62  DLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +++          INP     KI T   D    +EGCLS P Y   +KR+ ++TV  +D
Sbjct: 100 KMENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLD 159

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +       A G  A C+QHE DHL+G L+++ L++      T KM K+V+
Sbjct: 160 EHGNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 206


>gi|261213229|ref|ZP_05927511.1| peptide deformylase [Vibrio sp. RC341]
 gi|260837503|gb|EEX64206.1| peptide deformylase [Vibrio sp. RC341]
          Length = 190

 Score =  211 bits (537), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISET--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYRFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|114800420|ref|YP_759242.1| peptide deformylase [Hyphomonas neptunium ATCC 15444]
 gi|123028362|sp|Q0C4V1|DEF_HYPNA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114740594|gb|ABI78719.1| peptide deformylase [Hyphomonas neptunium ATCC 15444]
          Length = 176

 Score =  211 bits (537), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++  PDP L++VS+P+E  +  DI  L+D+MLE MY   GIGLAA+QIGV  R++
Sbjct: 1   MAIREILTVPDPRLKQVSKPVEGGVTDDIRALMDDMLETMYDAPGIGLAAIQIGVPLRVI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+DL        P  F+NP+I+   ++   Y+EGCLS+PD    V+RSA   +RY+D + 
Sbjct: 61  VMDLAREGEEPAPRYFVNPEILETIEEKKPYEEGCLSVPDIFDQVERSARCRIRYLDYDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +    +A+ L A C+QHE+DHL G LFID+LSRLKRD    K+ K  ++R
Sbjct: 121 KQVDEWAEDLYAVCIQHEMDHLEGTLFIDYLSRLKRDRAIDKVKK-AKIR 169


>gi|292493779|ref|YP_003529218.1| peptide deformylase [Nitrosococcus halophilus Nc4]
 gi|291582374|gb|ADE16831.1| peptide deformylase [Nitrosococcus halophilus Nc4]
          Length = 167

 Score =  211 bits (537), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAA+Q+ V  R+VV
Sbjct: 1   MAILNILHYPDPRLRRKAQPVATVDESIKKLADDMLETMYQAPGIGLAAIQVNVPKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   + +P+V INP+I+      +   EGCLS+P+    V R+A ITVRY+D   Q
Sbjct: 61  IDISE--DKSSPLVLINPEIVARRG-KAESDEGCLSVPEIFEPVTRAAEITVRYLDREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + A  LLATC+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 EQELEAQELLATCIQHELDHLEGKLFIDYLSTLKRQRIRKKVEKRQRL 165


>gi|253991650|ref|YP_003043006.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253783100|emb|CAQ86265.1| peptide deformylase [Photorhabdus asymbiotica]
          Length = 170

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 113/169 (66%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR ++ P+EK+++ I +++D+M E MY+ DGIGLAA Q+ +  R++V
Sbjct: 1   MPILQILHYPDERLRTIATPVEKVDAKIQSIVDDMFETMYAEDGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R   +V INP+++  +    + +EGCLSIP+ RA V R+  + +R +D N Q
Sbjct: 61  IDVSDT--RNERLVLINPELLEKNGKTGI-EEGCLSIPEQRALVSRAEKVKIRALDYNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 118 SFELQADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLYKQR 166


>gi|294338535|emb|CAZ86864.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
           3As]
          Length = 168

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  V++P+  ++  +  L+  M E MY+++G+GLAA Q+ V  R++V
Sbjct: 1   MEQLTIIQYPDPRLYTVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P+  INP+I+  S +   ++EGCLS+P     V R A + VR +D   Q
Sbjct: 61  MDTSE--ERNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A C+QHE+DHL G +F+D+LS LKR+ I  KM K  + 
Sbjct: 119 PFEMDADGLTAVCIQHEMDHLLGKVFVDYLSPLKRNRIKTKMLKRQRQ 166


>gi|28899816|ref|NP_799421.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837667|ref|ZP_01990334.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
 gi|260362018|ref|ZP_05775023.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|260876495|ref|ZP_05888850.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|260897448|ref|ZP_05905944.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|260901339|ref|ZP_05909734.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|31076643|sp|Q87KD5|DEF1_VIBPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|28808068|dbj|BAC61305.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748957|gb|EDM59784.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
 gi|308087895|gb|EFO37590.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|308090413|gb|EFO40108.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|308109891|gb|EFO47431.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|308114143|gb|EFO51683.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|328471167|gb|EGF42069.1| peptide deformylase [Vibrio parahaemolyticus 10329]
          Length = 172

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++ +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVDAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|323493839|ref|ZP_08098957.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
 gi|323311973|gb|EGA65119.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
          Length = 172

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDVSDT--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|320539229|ref|ZP_08038900.1| peptide deformylase [Serratia symbiotica str. Tucson]
 gi|320030867|gb|EFW12875.1| peptide deformylase [Serratia symbiotica str. Tucson]
          Length = 169

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDDRLRKIAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+    +R   +V INP+++  S +  + +EGCLS+P+ RA V R+A + +R +D + +
Sbjct: 61  IDIS--NNRDQRLVLINPELLEKSGETGI-EEGCLSLPEQRALVPRAANVKIRALDFDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|261856667|ref|YP_003263950.1| peptide deformylase [Halothiobacillus neapolitanus c2]
 gi|261837136|gb|ACX96903.1| peptide deformylase [Halothiobacillus neapolitanus c2]
          Length = 171

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +++FPD  LRRV+  +++ ++ +  L + MLE MY   G+GLAA QI V  R+ V
Sbjct: 1   MSLLEVLLFPDERLRRVAAEVKQFDARVQRLSEQMLETMYDARGVGLAATQIDVHERMFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +      P+VFINP I+  S      +EGCLSIP     V R+  + VR  +   +
Sbjct: 61  ADCAEDGCAPEPLVFINPVILDRSGSVES-EEGCLSIPGVTDKVMRAEAVRVRAQNAFGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A GLLA C+QHE+DHL+G LFID+LS LKR  I KK+ K ++ ++
Sbjct: 120 SFEREAGGLLAICIQHEIDHLDGRLFIDYLSPLKRQRIRKKLEKALRQKE 169


>gi|301155307|emb|CBW14773.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
          Length = 169

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 112/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N DI  ++D+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVVEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N +V INP+I+    +  + +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 61  IDIE--GDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVKYKKQ 165


>gi|268593574|ref|ZP_06127795.1| peptide deformylase [Providencia rettgeri DSM 1131]
 gi|291310851|gb|EFE51304.1| peptide deformylase [Providencia rettgeri DSM 1131]
          Length = 173

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 113/169 (66%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P++K+++ I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNVLHYPDERLRTIAKPVDKVDASIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R + +V INP+++  S +  + +EGCLSIP+    V R+  + VR ++ N +
Sbjct: 61  IDVSET--RDDRLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEQVKVRALNYNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +LR
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166


>gi|90406714|ref|ZP_01214907.1| peptide deformylase [Psychromonas sp. CNPT3]
 gi|90312167|gb|EAS40259.1| peptide deformylase [Psychromonas sp. CNPT3]
          Length = 170

 Score =  210 bits (536), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++ +     +++++  +M++ MY  +G+GLAA Q+ +  R+VV
Sbjct: 1   MALLDVLHFPDPRLRTVAKKVSNFTPELIDIAQDMIDTMYEENGVGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R +P+V INP+II+ S +    QEGCLS+PD  AD+ R+ F+TV++ D    
Sbjct: 61  IDVSD--ERDDPIVLINPEIISQSGE-ECSQEGCLSVPDINADITRAEFVTVKFQDVQGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q I AD LLA C+QHELDHL G LFID+LS  K+  I  K+ KL +  +
Sbjct: 118 AQQIEADSLLAVCIQHELDHLIGKLFIDYLSPFKQKRIKTKLEKLQRQNE 167


>gi|153834309|ref|ZP_01986976.1| peptide deformylase [Vibrio harveyi HY01]
 gi|148869317|gb|EDL68331.1| peptide deformylase [Vibrio harveyi HY01]
          Length = 172

 Score =  210 bits (536), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQEKLAKIKRFNE 167


>gi|307728142|ref|YP_003905366.1| peptide deformylase [Burkholderia sp. CCGE1003]
 gi|307582677|gb|ADN56075.1| peptide deformylase [Burkholderia sp. CCGE1003]
          Length = 167

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+I+  S++  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSDA--HDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|161506040|ref|YP_001573152.1| peptide deformylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189083077|sp|A9MN80|DEF_SALAR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|160867387|gb|ABX24010.1| hypothetical protein SARI_04221 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 169

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSE--NRNERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|320154884|ref|YP_004187263.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
 gi|319930196|gb|ADV85060.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
          Length = 170

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 61  IDISES--RNEPMVLINPEILEKHGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|293393278|ref|ZP_06637592.1| peptide deformylase [Serratia odorifera DSM 4582]
 gi|291424188|gb|EFE97403.1| peptide deformylase [Serratia odorifera DSM 4582]
          Length = 169

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 114/169 (67%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N  
Sbjct: 61  IDVSET--RDQRLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDYNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L+
Sbjct: 118 SFELAADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKLQ 166


>gi|241766760|ref|ZP_04764590.1| peptide deformylase [Acidovorax delafieldii 2AN]
 gi|241362866|gb|EER58605.1| peptide deformylase [Acidovorax delafieldii 2AN]
          Length = 169

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 109/167 (65%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P++ +++ I  L+ +ML  MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAQPVQAVDARIEALVADMLATMYDAHGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I+  S +  V  EGCLS+P     V+R+A + VR +D   +
Sbjct: 61  IDVSE--ERNEPLVLINPEIVWASAERHVGDEGCLSVPGIYDGVERAAAVHVRALDAQGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  +
Sbjct: 119 SRTIEAEGLLAVCMQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQR 165


>gi|319778670|ref|YP_004129583.1| Peptide deformylase [Taylorella equigenitalis MCE9]
 gi|317108694|gb|ADU91440.1| Peptide deformylase [Taylorella equigenitalis MCE9]
          Length = 169

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 111/169 (65%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L+++++ ++ ++  I  ++++M E MY+ +G+GLAA Q+ +  R+VV
Sbjct: 1   MAVLPILKYPDPRLKKIAKDVDVVDESIKKIVEDMAETMYAANGVGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R + +V INP+II  S++  +++EGCLS+P    +V+R + + V+ +D N  
Sbjct: 61  IDVSE--ERNDLLVLINPEIIGISEEKVIHEEGCLSVPTIYDNVERFSEVRVKALDQNGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                ADGLLA C+QHELDHL G +F++ LS LK++ I  K+ K  +  
Sbjct: 119 AFEFKADGLLAICVQHELDHLMGKVFVEKLSALKQNRIKTKLKKAQKEE 167


>gi|325577099|ref|ZP_08147583.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160681|gb|EGC72802.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
          Length = 175

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 112/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N DI  ++D+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 7   MTALNVLIYPDDHLKIVCEPVAEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 66

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N +V INP+I+    +  + +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 67  IDIE--GDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGK 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 124 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVKYKKQ 171


>gi|121999101|ref|YP_001003888.1| peptide deformylase [Halorhodospira halophila SL1]
 gi|121590506|gb|ABM63086.1| peptide deformylase [Halorhodospira halophila SL1]
          Length = 169

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++++PDP LR  + P+ +++  +  L+D+MLE MY   GIGLAA Q+G   R+ V
Sbjct: 1   MALLDILVYPDPRLRERAEPVAEVDDAVRRLVDDMLETMYEARGIGLAATQVGDRRRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I+  + + +  +EGCLSIP Y  DV R+  +  R +D +AQ
Sbjct: 61  IDVSE--ERDEPLVLINPEILEATGE-ASGEEGCLSIPGYYDDVARATRVRYRALDRDAQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+G LA CLQHE+DHL+G LFID+LS LKR  + K+M K  +L
Sbjct: 118 PIEGEAEGTLAVCLQHEIDHLDGRLFIDYLSELKRKRVRKRMEKRERL 165


>gi|271502213|ref|YP_003335239.1| peptide deformylase [Dickeya dadantii Ech586]
 gi|270345768|gb|ACZ78533.1| peptide deformylase [Dickeya dadantii Ech586]
          Length = 169

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 111/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRTQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+++  S D  + +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSE--ERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + 
Sbjct: 118 PFELDADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLARQ 165


>gi|117928486|ref|YP_873037.1| peptide deformylase [Acidothermus cellulolyticus 11B]
 gi|158512367|sp|A0LUE1|DEF_ACIC1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|117648949|gb|ABK53051.1| peptide deformylase [Acidothermus cellulolyticus 11B]
          Length = 180

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  LI +++E M    G+GLAA QIGV  R+ V
Sbjct: 1   MAVRPIRLFGDPVLRTPAEPVTDFDKELRVLIKDLIETMQDAPGVGLAAPQIGVSLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+            +NP +   S++     EGCLS+P     +KR+     +  +   +
Sbjct: 61  YDVDGVVG-----HLVNPSLD-LSEEQQDGDEGCLSLPGLSYPLKRAKRAVAKGFNEFGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I+    LLA C+QHE DHL+G+LFID L   +R +  + + +   
Sbjct: 115 PVILEGSDLLARCVQHETDHLDGVLFIDRLDPEQRKLAMRAIREAEW 161


>gi|16762876|ref|NP_458493.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144363|ref|NP_807705.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213161458|ref|ZP_03347168.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213418738|ref|ZP_03351804.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213584235|ref|ZP_03366061.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213650879|ref|ZP_03380932.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|289824191|ref|ZP_06543786.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|23396544|sp|Q8Z1W9|DEF_SALTI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|25303718|pir||AB1010 formylmethionine deformylase (EC 3.5.1.31) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505183|emb|CAD09179.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140001|gb|AAO71565.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 169

 Score =  210 bits (535), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N  
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|34499720|ref|NP_903935.1| peptide deformylase [Chromobacterium violaceum ATCC 12472]
 gi|39930829|sp|Q7NQ75|DEF_CHRVO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34105571|gb|AAQ61925.1| Polypeptide deformylase [Chromobacterium violaceum ATCC 12472]
          Length = 167

 Score =  210 bits (535), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E  ++ +   ID+M E MY   GIGLAA Q+    RLVV
Sbjct: 1   MALLNILHYPDERLHTVAKPVEVFDAALQQQIDDMFETMYEAKGIGLAATQVDYHRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   R    VFINP+I+    +  VY+EGCLS+P     V R+  + V+  D + +
Sbjct: 61  MDISE--ERDERRVFINPEIVEKDGET-VYEEGCLSVPGIYDKVTRAERVKVKAQDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHLNG++F++ LS++K+  I  K+ K  + 
Sbjct: 118 PFELEADGLLAICIQHELDHLNGVVFVERLSQMKQQRIKTKLKKREKQ 165


>gi|254851611|ref|ZP_05240961.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|254847316|gb|EET25730.1| peptide deformylase 2 [Vibrio cholerae MO10]
          Length = 190

 Score =  210 bits (535), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|27364480|ref|NP_760008.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|31076651|sp|Q8DDE3|DEF1_VIBVU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|27360599|gb|AAO09535.1| peptide deformylase [Vibrio vulnificus CMCP6]
          Length = 170

 Score =  210 bits (535), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 61  IDISES--RNEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|149910328|ref|ZP_01898971.1| peptide deformylase [Moritella sp. PE36]
 gi|149806576|gb|EDM66544.1| peptide deformylase [Moritella sp. PE36]
          Length = 167

 Score =  210 bits (535), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  L+++++P+++I      +ID+MLE MY+ +GIGLAAVQ+ +L R+VV
Sbjct: 1   MAILEVLHFPDDRLKKIAQPVQEITPATQIIIDDMLETMYAEEGIGLAAVQVNILQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     R  P++ INP +     +  + +EGCLS+P+ RA V R+  +TV  +D +  
Sbjct: 61  IDVSGT--RGEPLILINPVLTNKCGETGI-EEGCLSVPESRAFVPRAESVTVTALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA CLQHE+DHLNG LFID+LS LK+  I KK+ KL + 
Sbjct: 118 EFTLEAHDLLAICLQHEVDHLNGKLFIDYLSPLKQQRIRKKLEKLARQ 165


>gi|89902619|ref|YP_525090.1| peptide deformylase [Rhodoferax ferrireducens T118]
 gi|89347356|gb|ABD71559.1| peptide deformylase [Rhodoferax ferrireducens T118]
          Length = 169

 Score =  210 bits (535), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P+  ++  +  LI +MLE MY   GIGLAA QI V  RL+V
Sbjct: 1   MALLPILCYPDPKLHTVAKPVSTVDVRVQTLIVDMLETMYEAKGIGLAATQINVHERLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   R  P+V INP+++  S +  + +EGCLS+P     V+R   +TV  +D   Q
Sbjct: 61  VDVSE--ERDAPLVLINPQLVWSSAETHLNEEGCLSVPGIYDGVERFDAVTVTALDGQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR+ I KKM K  +  
Sbjct: 119 SRLIEAEGLLAVCIQHEMDHLQGKVFVEYLSPLKRNRIKKKMLKSQREE 167


>gi|294138834|ref|YP_003554812.1| polypeptide deformylase [Shewanella violacea DSS12]
 gi|293325303|dbj|BAJ00034.1| polypeptide deformylase [Shewanella violacea DSS12]
          Length = 170

 Score =  210 bits (535), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P+ + N+ +   IDNM E MY   GIGLAA Q+    +L++
Sbjct: 1   MSLLKVLRFPDERLRTFAKPVTEFNTGLQTQIDNMFETMYEEKGIGLAATQVDYHRQLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFIN +I+  S  FS  +EGCLS+P   AD++R+  +T++ +D +  
Sbjct: 61  MDLQDEEER--PKVFINLEIVASSGHFS-NEEGCLSVPGIYADIERAEHVTIKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA CLQHELDHL G LF+D+LS LKR  I +K+ K  +L 
Sbjct: 118 EFTLEADGLLAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARLE 166


>gi|262191293|ref|ZP_06049487.1| peptide deformylase [Vibrio cholerae CT 5369-93]
 gi|262032831|gb|EEY51375.1| peptide deformylase [Vibrio cholerae CT 5369-93]
          Length = 190

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRVVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|297180810|gb|ADI17016.1| N-formylmethionyl-tRNA deformylase [uncultured Vibrionales
           bacterium HF0010_22E23]
          Length = 170

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 109/167 (65%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDERLRTVAKPVESVTPEIQKIVDDMLETMYEENGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  +A V R+A +TV+ +D +  
Sbjct: 61  IDVSET--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGSQALVPRAAEVTVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 118 EYQFDADDLLAICVQHELDHLMGKLFVDYLSPLKRQRIKQKLEKIKR 164


>gi|229530168|ref|ZP_04419557.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229332301|gb|EEN97788.1| peptide deformylase [Vibrio cholerae 12129(1)]
          Length = 194

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 115/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 26  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 86  IDISE--NRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192


>gi|162452083|ref|YP_001614450.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56']
 gi|161162665|emb|CAN93970.1| Polypeptide deformylase [Sorangium cellulosum 'So ce 56']
          Length = 170

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 68/164 (41%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +PDP LR+ ++P+ +I+ +I  LID+M E MY+  G+GLAA QIG  +R+ +
Sbjct: 1   MAIRTILHYPDPRLRQKAQPVGEISPEITKLIDDMAETMYAAPGVGLAATQIGEPHRVFL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+       N +VFINP+I+          EGCLS P    D+KR+  +TVR    +  
Sbjct: 61  VDIAADDEPSNLLVFINPEIVRQEGQL-TGPEGCLSFPGISEDIKRAERVTVRARGRDGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I ADGLLA  +QHELDHL+G+L ID +  LK+ ++ +KM K
Sbjct: 120 TFEIAADGLLAVAIQHELDHLDGVLMIDRMGTLKKRIVQRKMQK 163


>gi|251793801|ref|YP_003008533.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
 gi|247535200|gb|ACS98446.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
          Length = 170

 Score =  209 bits (534), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+P+  L+ +  P+ ++N D   +ID+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPEDHLKVICDPVTEVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N +V INP+I+    +  + +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDIE--GDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K+ + R+
Sbjct: 118 EFTLKADRLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKVKKQRE 167


>gi|71064611|ref|YP_263338.1| peptide deformylase [Psychrobacter arcticus 273-4]
 gi|123734488|sp|Q4FVQ4|DEF_PSYA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71037596|gb|AAZ17904.1| peptide deformylase [Psychrobacter arcticus 273-4]
          Length = 184

 Score =  209 bits (534), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 112/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR ++ P++++ ++I  LI +M+E MY  +GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSYPDPRLRMIATPVKEVTAEIKTLITDMIETMYDAEGIGLAASQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   + +P VFINPK+    ++   Y+EGCLS+PD    V+R   + +  +D N  
Sbjct: 61  MDLSE--DKDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEAIDQNGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 +GLLA C+QHE+DHLNG++F+D+LSRLK+     K+ K++++R+
Sbjct: 119 AIDEEVEGLLAVCIQHEIDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168


>gi|121606766|ref|YP_984095.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
 gi|120595735|gb|ABM39174.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
          Length = 173

 Score =  209 bits (534), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 105/170 (61%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P+   ++ +  L D M   MY+ +GIGLAA Q+ V  RLVV
Sbjct: 1   MTPLTILRYPDPRLHTVAKPVAAFDARLRQLADAMFHTMYAAEGIGLAATQVDVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I+  S +  +  EGCLS+P     V+R+  + V  +D N Q
Sbjct: 61  IDVSE--GRNQPLVLINPEIVWASAETRIGDEGCLSVPGIYDGVERALAVKVAALDLNGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q+  A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  +  +
Sbjct: 119 KQLHEAEGMLAVCIQHEMDHLIGKVFVEYLSPLKRNRIKTKLIKQKKDEE 168


>gi|194291227|ref|YP_002007134.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
 gi|193225062|emb|CAQ71073.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
          Length = 168

 Score =  209 bits (534), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSET--RDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK + I  K+ K  + R
Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERAR 167


>gi|94266527|ref|ZP_01290215.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93452856|gb|EAT03376.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 259

 Score =  209 bits (534), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 19/183 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  + P+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKAAPVTEFDDSLRALVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           I          D +D        A  +NP +V INP+++    +  V +EGCLS+ DY +
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            VKR A + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+
Sbjct: 191 KVKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250

Query: 163 SKL 165
            K+
Sbjct: 251 KKI 253


>gi|88801027|ref|ZP_01116576.1| peptide deformylase [Reinekea sp. MED297]
 gi|88776230|gb|EAR07456.1| peptide deformylase [Reinekea sp. MED297]
          Length = 169

 Score =  209 bits (534), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++PIEK++ +I  L D+MLE MY   GIGLAA Q+    RL+V
Sbjct: 1   MALLDILEFPDPRLRTVAKPIEKVDGEIQKLADDMLETMYDAPGIGLAASQVDRHIRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   + +P + INP+     +D   YQEGCLS+P Y   V RS  I+VR ++ +  
Sbjct: 61  VDVSE--DQNDPHILINPEYDRLGEDIE-YQEGCLSVPGYYEKVSRSDRISVRALNRDGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A  L A C+QHE+DHL+G LF+D+LS LKR  I KK+ K  + 
Sbjct: 118 AIEFEATDLFAICIQHEIDHLDGKLFVDYLSNLKRTRIRKKLEKQHKQ 165


>gi|269962644|ref|ZP_06176989.1| peptide deformylase [Vibrio harveyi 1DA3]
 gi|269832567|gb|EEZ86681.1| peptide deformylase [Vibrio harveyi 1DA3]
          Length = 193

 Score =  209 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ V  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHKRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 82  IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 139 EYTFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 188


>gi|260771088|ref|ZP_05880016.1| peptide deformylase [Vibrio furnissii CIP 102972]
 gi|260613977|gb|EEX39168.1| peptide deformylase [Vibrio furnissii CIP 102972]
 gi|315178587|gb|ADT85501.1| peptide deformylase [Vibrio furnissii NCTC 11218]
          Length = 170

 Score =  209 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP I+    +  + +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDISET--RDEPMVLINPVILEKRGEDGI-EEGCLSVPGARALVARAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  D
Sbjct: 118 EYTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFND 167


>gi|16766695|ref|NP_462310.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415326|ref|YP_152401.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62181912|ref|YP_218329.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161616432|ref|YP_001590397.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167554203|ref|ZP_02347944.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167995181|ref|ZP_02576271.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168239761|ref|ZP_02664819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245233|ref|ZP_02670165.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264713|ref|ZP_02686686.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168468037|ref|ZP_02701874.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168823236|ref|ZP_02835236.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194444564|ref|YP_002042658.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194451296|ref|YP_002047431.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194734454|ref|YP_002116350.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197248664|ref|YP_002148327.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197265509|ref|ZP_03165583.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364256|ref|YP_002143893.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198245506|ref|YP_002217370.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200388386|ref|ZP_03214998.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205354966|ref|YP_002228767.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858648|ref|YP_002245299.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913879|ref|ZP_04657716.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|23396546|sp|Q8ZLM7|DEF_SALTY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|75505525|sp|Q57J64|DEF_SALCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81677960|sp|Q5PIT8|DEF_SALPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083078|sp|A9N8B1|DEF_SALPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690058|sp|B5F7R3|DEF_SALA4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690317|sp|B5FJI2|DEF_SALDC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690438|sp|B5R1E3|DEF_SALEP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690545|sp|B5RH49|DEF_SALG2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690672|sp|B4TJX7|DEF_SALHS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690738|sp|B5BGV3|DEF_SALPK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238693518|sp|B4SUQ8|DEF_SALNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238693718|sp|B4TXB0|DEF_SALSV RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|16421962|gb|AAL22269.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56129583|gb|AAV79089.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62129545|gb|AAX67248.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161365796|gb|ABX69564.1| hypothetical protein SPAB_04247 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403227|gb|ACF63449.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194409600|gb|ACF69819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194709956|gb|ACF89177.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195628902|gb|EDX48312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197095733|emb|CAR61303.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197212367|gb|ACH49764.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197243764|gb|EDY26384.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197287582|gb|EDY26974.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197940022|gb|ACH77355.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199605484|gb|EDZ04029.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205274747|emb|CAR39803.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205321541|gb|EDZ09380.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327093|gb|EDZ13857.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205336019|gb|EDZ22783.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340500|gb|EDZ27264.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205346889|gb|EDZ33520.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206710451|emb|CAR34809.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261248563|emb|CBG26401.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995615|gb|ACY90500.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159949|emb|CBW19468.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914429|dbj|BAJ38403.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087852|emb|CBY97615.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321226458|gb|EFX51508.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322615053|gb|EFY11977.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617340|gb|EFY14241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625562|gb|EFY22387.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626404|gb|EFY23213.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632084|gb|EFY28837.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635037|gb|EFY31760.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643262|gb|EFY39829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646654|gb|EFY43161.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650000|gb|EFY46419.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652717|gb|EFY49057.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659526|gb|EFY55770.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665532|gb|EFY61719.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322670426|gb|EFY66565.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322670499|gb|EFY66633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675075|gb|EFY71158.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681612|gb|EFY77641.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685956|gb|EFY81945.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322716398|gb|EFZ07969.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131764|gb|ADX19194.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195826|gb|EFZ80999.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323196418|gb|EFZ81569.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202703|gb|EFZ87742.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207308|gb|EFZ92258.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211256|gb|EFZ96101.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216035|gb|EGA00766.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223474|gb|EGA07802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226796|gb|EGA10986.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231842|gb|EGA15952.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323233205|gb|EGA17300.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237272|gb|EGA21337.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245507|gb|EGA29506.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249013|gb|EGA32935.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250636|gb|EGA34517.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256865|gb|EGA40579.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263014|gb|EGA46561.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266014|gb|EGA49509.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272771|gb|EGA56174.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625151|gb|EGE31496.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326630115|gb|EGE36458.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332990258|gb|AEF09241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 169

 Score =  209 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|194367357|ref|YP_002029967.1| peptide deformylase [Stenotrophomonas maltophilia R551-3]
 gi|238693439|sp|B4SKH7|DEF_STRM5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194350161|gb|ACF53284.1| peptide deformylase [Stenotrophomonas maltophilia R551-3]
          Length = 170

 Score =  209 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  I   E        L+DNM + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAALIDAAEVTTPAFQELVDNMFQTMYDAPGIGLAATQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +   +  P VFINP+I+       VYQEGCLS+P   ADV R+  ITV+Y+D 
Sbjct: 61  FMVIDVSE--EKNEPHVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + Q Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K  +
Sbjct: 118 DGQQQELEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167


>gi|209515834|ref|ZP_03264696.1| peptide deformylase [Burkholderia sp. H160]
 gi|209503682|gb|EEA03676.1| peptide deformylase [Burkholderia sp. H160]
          Length = 167

 Score =  209 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ ++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVTEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+I+  SD+    +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSET--HDELLALINPEIVWSSDERKFSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|113869635|ref|YP_728124.1| peptide deformylase [Ralstonia eutropha H16]
 gi|113528411|emb|CAJ94756.1| formylmethionine deformylase [Ralstonia eutropha H16]
          Length = 168

 Score =  209 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSET--RDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK + I  K+ K  + R
Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERTR 167


>gi|94268712|ref|ZP_01291263.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93451495|gb|EAT02324.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 259

 Score =  209 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 19/183 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  +RP+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDH-------AHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           I          D +D        A  +NP +V INP+++    +  V +EGCLS+ DY +
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGE-EVDEEGCLSVRDYSS 190

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            VKR   + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+
Sbjct: 191 KVKRYTRVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKL 250

Query: 163 SKL 165
            K+
Sbjct: 251 KKI 253


>gi|229508331|ref|ZP_04397835.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229508830|ref|ZP_04398321.1| peptide deformylase [Vibrio cholerae B33]
 gi|229515915|ref|ZP_04405372.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229517101|ref|ZP_04406547.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229520217|ref|ZP_04409644.1| peptide deformylase [Vibrio cholerae TM 11079-80]
 gi|229606606|ref|YP_002877254.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|229342811|gb|EEO07802.1| peptide deformylase [Vibrio cholerae TM 11079-80]
 gi|229346164|gb|EEO11136.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229347015|gb|EEO11977.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229354105|gb|EEO19037.1| peptide deformylase [Vibrio cholerae B33]
 gi|229354604|gb|EEO19526.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229369261|gb|ACQ59684.1| peptide deformylase [Vibrio cholerae MJ-1236]
          Length = 194

 Score =  209 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 26  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 86  IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192


>gi|269140540|ref|YP_003297241.1| peptide deformylase [Edwardsiella tarda EIB202]
 gi|267986201|gb|ACY86030.1| peptide deformylase [Edwardsiella tarda EIB202]
 gi|304560325|gb|ADM42989.1| Peptide deformylase [Edwardsiella tarda FL6-60]
          Length = 171

 Score =  209 bits (534), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 111/169 (65%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++    +  + +EGCLS+P+ RA V R+  I VR +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLQHDGEAGI-EEGCLSVPEQRALVTRAESIKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + +
Sbjct: 118 PFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|323496960|ref|ZP_08101988.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
 gi|323318034|gb|EGA71017.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
          Length = 173

 Score =  209 bits (534), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|327482957|gb|AEA77364.1| Peptide deformylase [Vibrio cholerae LMA3894-4]
          Length = 169

 Score =  209 bits (533), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 115/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISE--NRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|94971313|ref|YP_593361.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
 gi|94553363|gb|ABF43287.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
          Length = 170

 Score =  209 bits (533), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V   DP+L R +  + + +  +  L+++M E MY   G+GLAA QIG+  R+ V+
Sbjct: 1   MTYPIVKLGDPVLERPAAAVTEFDDGLKKLVEDMFESMYDAHGVGLAAPQIGIGKRIAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP+II  +D     QEGCLSIPD+R  V R+  +TV+  D   + 
Sbjct: 61  DVTFKEDPNAKLVLINPEII-LTDGRQTSQEGCLSIPDFREKVTRARRVTVKAQDLTGKW 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                + LLA    HE DHLNG L+I H+S LKRD+I +K+ KL++  +
Sbjct: 120 FEHTGEDLLARAFLHETDHLNGKLYISHVSALKRDLIKRKVKKLIKAGE 168


>gi|329118894|ref|ZP_08247589.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464922|gb|EGF11212.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 167

 Score =  209 bits (533), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EKI++ I  LI +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEKIDARIKTLIADMFETMYEARGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I   + +   Y+EGCLS+P     V R+  +TV  ++ N +
Sbjct: 61  MDLSE--ERNEPRVFINPVITHKNGET-TYEEGCLSVPGIYDTVTRAETVTVEALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  + 
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIRTKLKKRQRQ 165


>gi|168234463|ref|ZP_02659521.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194472649|ref|ZP_03078633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194459013|gb|EDX47852.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331619|gb|EDZ18383.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 169

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEANGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|156972726|ref|YP_001443633.1| peptide deformylase [Vibrio harveyi ATCC BAA-1116]
 gi|166198526|sp|A7N121|DEF_VIBHB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|156524320|gb|ABU69406.1| hypothetical protein VIBHAR_00391 [Vibrio harveyi ATCC BAA-1116]
          Length = 172

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|283458224|ref|YP_003362842.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
 gi|283134257|dbj|BAI65022.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
          Length = 248

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 9/171 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+VI  +P+L R + P+ + N ++  L+ +M E M +++G+GLAA QIGV  R+   
Sbjct: 60  AIRPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTY 119

Query: 62  DLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +++          INP     KI T   D    +EGCLS P Y   +KR+ ++TV  +D
Sbjct: 120 KMENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLD 179

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +       A G  A C+QHE DHL+G L+++ L++      T KM K+V+
Sbjct: 180 EHGNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 226


>gi|285019618|ref|YP_003377329.1| peptide deformylase [Xanthomonas albilineans GPE PC73]
 gi|283474836|emb|CBA17335.1| putative peptide deformylase protein [Xanthomonas albilineans]
          Length = 170

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    ++ FPD  LR  + P++     +     L+D+M + MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLTILEFPDSRLRTKAEPVDPAEVASVAFQRLLDDMFDTMYAAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +   +  P VF+NP+I+    +  V+QEGCLS+P   ADV RS  ITVRY+D 
Sbjct: 61  FMVIDVSE--EKNAPHVFVNPQIVQREGE-QVHQEGCLSVPGIYADVTRSESITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q +  DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK+ K  +
Sbjct: 118 QGQSQELTTDGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLVKARK 167


>gi|262273080|ref|ZP_06050897.1| peptide deformylase [Grimontia hollisae CIP 101886]
 gi|262222836|gb|EEY74144.1| peptide deformylase [Grimontia hollisae CIP 101886]
          Length = 170

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 109/167 (65%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+MLE MY  DGIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVESVTPEIQKIVDDMLETMYQEDGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R++ +TV+ +D +  
Sbjct: 61  IDISET--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRASEVTVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                AD LLA C+QHELDHL G LF+D+LS LK+  I +K+ K+ +
Sbjct: 118 EYQFEADDLLAICVQHELDHLEGKLFVDYLSPLKQQRIKQKLEKIKR 164


>gi|212709012|ref|ZP_03317140.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM
           30120]
 gi|212688378|gb|EEB47906.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM
           30120]
          Length = 173

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 110/169 (65%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR V++P+EK+++ I  +ID+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNVLHYPDERLRTVAKPVEKVDASIQRIIDDMFDTMYDEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+++    +  + +EGCLS+P+    V R+  + VR ++ N  
Sbjct: 61  IDVSES--RNERLVLINPELLNKEGETGI-EEGCLSVPEQHGFVPRAEKVKVRALNYNGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +LR
Sbjct: 118 AFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166


>gi|300024230|ref|YP_003756841.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526051|gb|ADJ24520.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 171

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 118/168 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+LR++S P+E+++  ++ L+D+MLE MY   GIGLAAVQ+GVL R++V
Sbjct: 1   MAILPIITIPDPVLRKISDPVERVDDAVVKLMDDMLETMYDAPGIGLAAVQVGVLKRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +     NP+   NP+++       +++EGCLSIPD   +++R A +TVRY+D + +
Sbjct: 61  VDAAEDGAPHNPIAMANPELVALGSTTRLHEEGCLSIPDVHVEIERPASVTVRYIDRHGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + A+GLLAT +QHELDHL+G L ID LSRLKRDM+ +K  K V+ 
Sbjct: 121 EQELAAEGLLATAVQHELDHLDGQLIIDFLSRLKRDMVIRKFKKQVRE 168


>gi|288575787|ref|ZP_05977581.2| peptide deformylase [Neisseria mucosa ATCC 25996]
 gi|288566988|gb|EFC88548.1| peptide deformylase [Neisseria mucosa ATCC 25996]
          Length = 193

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EK++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 27  MALLNILQYPDERLHTVAKPVEKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VF+NP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 87  MDLTE--DRSEPRVFVNPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 143

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 144 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190


>gi|114777061|ref|ZP_01452081.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1]
 gi|114552582|gb|EAU55042.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1]
          Length = 180

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 102/179 (56%), Gaps = 12/179 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++I PD  L +VSRP+E  ++ ++  LI +M + MY   G+GLAA Q+G L R+ 
Sbjct: 1   MAVREILIHPDDRLVQVSRPVEFPLSDEVKELIRDMADTMYDAPGVGLAAPQVGELLRIA 60

Query: 60  VIDL-----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           V D                  +   V+INP+ +  SD+   ++EGCLS+P+   DV R A
Sbjct: 61  VTDTVWRDKEVRHDGDLPGGHRELKVWINPEFLWKSDEMETWEEGCLSVPETWGDVSRPA 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + +R+ D +        DG  A  LQHE DHL+G LFID+LS LKR MITKKM KL +
Sbjct: 121 ALRLRWFDEHGVQHEQDFDGFQAVALQHEFDHLDGKLFIDYLSPLKRRMITKKMKKLYK 179


>gi|297581920|ref|ZP_06943840.1| peptide deformylase [Vibrio cholerae RC385]
 gi|297533787|gb|EFH72628.1| peptide deformylase [Vibrio cholerae RC385]
          Length = 190

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++DNMLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDNMLETMYAEEGIGLAATQVDIHQRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|15640078|ref|NP_229705.1| peptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587283|ref|ZP_01677056.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121727904|ref|ZP_01680963.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|147673376|ref|YP_001218366.1| peptide deformylase [Vibrio cholerae O395]
 gi|153212941|ref|ZP_01948535.1| polypeptide deformylase [Vibrio cholerae 1587]
 gi|153802782|ref|ZP_01957368.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|153817595|ref|ZP_01970262.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|153821925|ref|ZP_01974592.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|153826444|ref|ZP_01979111.1| polypeptide deformylase [Vibrio cholerae MZO-2]
 gi|153830125|ref|ZP_01982792.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|227080283|ref|YP_002808834.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|254291093|ref|ZP_04961890.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|255746772|ref|ZP_05420718.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262155853|ref|ZP_06028975.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
 gi|262166896|ref|ZP_06034617.1| peptide deformylase [Vibrio cholerae RC27]
 gi|17432954|sp|Q9KVU3|DEF1_VIBCH RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|9654439|gb|AAF93224.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548529|gb|EAX58585.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121629848|gb|EAX62263.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|124116167|gb|EAY34987.1| polypeptide deformylase [Vibrio cholerae 1587]
 gi|124121695|gb|EAY40438.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|126511863|gb|EAZ74457.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|126520545|gb|EAZ77768.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|146315259|gb|ABQ19798.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|148874389|gb|EDL72524.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|149739830|gb|EDM54025.1| polypeptide deformylase [Vibrio cholerae MZO-2]
 gi|150422938|gb|EDN14888.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|227008171|gb|ACP04383.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|227011951|gb|ACP08161.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|255735529|gb|EET90928.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262024667|gb|EEY43347.1| peptide deformylase [Vibrio cholerae RC27]
 gi|262030305|gb|EEY48947.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
          Length = 169

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISET--RDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|295675125|ref|YP_003603649.1| peptide deformylase [Burkholderia sp. CCGE1002]
 gi|295434968|gb|ADG14138.1| peptide deformylase [Burkholderia sp. CCGE1002]
          Length = 167

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       + FINP+I+  SD   + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSET--HDELLAFINPEIVWSSDQRKLSEEGCLSVPGIYDNVERAEKVRVRALNQKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|188492250|ref|ZP_02999520.1| peptide deformylase [Escherichia coli 53638]
 gi|291284645|ref|YP_003501463.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615]
 gi|188487449|gb|EDU62552.1| peptide deformylase [Escherichia coli 53638]
 gi|209757364|gb|ACI76994.1| peptide deformylase [Escherichia coli]
 gi|290764518|gb|ADD58479.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615]
 gi|320661377|gb|EFX28792.1| peptide deformylase [Escherichia coli O55:H7 str. USDA 5905]
          Length = 169

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 118/170 (69%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+D
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167


>gi|315497920|ref|YP_004086724.1| peptide deformylase [Asticcacaulis excentricus CB 48]
 gi|315415932|gb|ADU12573.1| peptide deformylase [Asticcacaulis excentricus CB 48]
          Length = 178

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/167 (45%), Positives = 111/167 (66%), Gaps = 9/167 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++  P P+L++VS+P+E  +  ++  L+D+MLE MY   GIGLAA+QIG   R++
Sbjct: 1   MAIRDIITVPHPLLKQVSKPVEGGVTDELRALMDDMLETMYDAPGIGLAAIQIGEPIRVI 60

Query: 60  VIDL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           V+DL        +D    K P  F+NP+II  S++ S Y EGCLS+P+   +VKR A + 
Sbjct: 61  VMDLQERPDDLPEDAPAPKQPRYFVNPEIIWASEELSTYDEGCLSVPEVYDEVKRPARVR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           ++Y++   +  I   DGL ATC+QHE+DHLNG+LFIDHLS+LKRD  
Sbjct: 121 LKYLNYQGEEVIEECDGLYATCIQHEMDHLNGVLFIDHLSKLKRDRA 167


>gi|307132806|ref|YP_003884822.1| peptide deformylase [Dickeya dadantii 3937]
 gi|306530335|gb|ADN00266.1| peptide deformylase [Dickeya dadantii 3937]
          Length = 169

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 112/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIKAQPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+++  S D  + +EGCLSIP+ RA V R+  ++VR +D   +
Sbjct: 61  IDVSE--ERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAERVSVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLARQ 165


>gi|94676503|ref|YP_588858.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|123384127|sp|Q1LT56|DEF_BAUCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|94219653|gb|ABF13812.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 167

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 108/167 (64%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  LR++S+P+ KIN+ I  ++ +M + MY  +GIGLAA Q+ +   ++V
Sbjct: 1   MSLLPILYYPDHRLRQISKPVNKINNSIYRIVYDMFDTMYHKNGIGLAAPQVNINLNIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++  +V INP+++  S +  ++ EGCLSIP+    V R+  I VR +D N  
Sbjct: 61  IDVSENKEQR--LVLINPELLAKSGETGIH-EGCLSIPEQHGFVPRAKNIKVRALDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  + L A C+QHE+DHL G LFID+LS LKR  + KKM +L++
Sbjct: 118 SFNLETNDLQAICIQHEMDHLVGKLFIDYLSPLKRQRLLKKMKQLIR 164


>gi|242237892|ref|YP_002986073.1| peptide deformylase [Dickeya dadantii Ech703]
 gi|242129949|gb|ACS84251.1| peptide deformylase [Dickeya dadantii Ech703]
          Length = 170

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAKPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+++  S D  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--ERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAERVKIRALDKDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +  DGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +  +
Sbjct: 118 PFELETDGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLDRQNN 167


>gi|319785850|ref|YP_004145325.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464362|gb|ADV26094.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
          Length = 170

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 107/170 (62%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +E           L+D+M E MY   GIGLAA Q+    R
Sbjct: 1   MALLPILEFPDPRLRTKAAQVEPAQVTTPGFQRLVDDMFETMYEAPGIGLAATQVDQHLR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID  +   +  PMVFINP+I+  S    VYQEGCLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVIDTSE--DKSAPMVFINPEIV-QSQGGRVYQEGCLSVPGIYADVTRADTIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + Q + ADGLLATC+QHE+DHL G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 EGRQQELAADGLLATCIQHEMDHLEGKLFVDYLSPLKREMVRKKLAKARR 167


>gi|117923458|ref|YP_864075.1| peptide deformylase [Magnetococcus sp. MC-1]
 gi|117607214|gb|ABK42669.1| peptide deformylase [Magnetococcus sp. MC-1]
          Length = 173

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 4/160 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PDP+L++ + P+  +++ I  L+ +MLE MY+  GIGLAA Q+GV  R++V
Sbjct: 1   MAILPIVTAPDPVLKKRAEPVVAVDASIQQLMRDMLETMYAAPGIGLAAPQVGVSKRVIV 60

Query: 61  IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +D+   +  A    P    NP+II    +   ++EGCLS+P+    V R   + VR ++ 
Sbjct: 61  VDVTYSEAAAQDGEPYCLANPEIIAAEGEI-TWEEGCLSVPESYGKVDRKEHVVVRGLNA 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
             +   + A GL A CLQHE+DHL+G LFIDHLS LKR M
Sbjct: 120 QGELVTLEAHGLFAVCLQHEIDHLDGTLFIDHLSSLKRTM 159


>gi|312115223|ref|YP_004012819.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220352|gb|ADP71720.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 176

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/170 (48%), Positives = 114/170 (67%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD ILR  S+ +E ++ ++  L ++MLE MY+  GIGLAAVQIGVL RL+V
Sbjct: 1   MAIRSIITIPDAILRETSKTVETVDDEVRALANDMLETMYAAPGIGLAAVQIGVLRRLIV 60

Query: 61  IDLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D Q    + KNP+V INP+I+T  D   V++EGCLSIP   A+V+R A + VRY+D   
Sbjct: 61  MDAQKGDEKGKNPVVLINPEILTHGDTPRVHEEGCLSIPQMYAEVERPALVRVRYVDAEG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q      L AT +QHE+DHL G LFIDHLSRLKR ++ +K  KL + R
Sbjct: 121 KQQERDFSDLEATLVQHEIDHLEGRLFIDHLSRLKRTLLIRKYHKLQRER 170


>gi|303245828|ref|ZP_07332110.1| peptide deformylase [Desulfovibrio fructosovorans JJ]
 gi|302492611|gb|EFL52479.1| peptide deformylase [Desulfovibrio fructosovorans JJ]
          Length = 177

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 104/168 (61%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P PIL   S P+  +  +I  L D+M E MY+  G+GLAA Q+G   RLVVI
Sbjct: 1   MLLEILKYPHPILAAKSEPVPGVTPEIRQLADDMAETMYANQGVGLAAPQVGRSIRLVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL     R+  +  +NP I     +     EGCLS+ DYRA+VKR+A +TV   D +   
Sbjct: 61  DLSGPDKREERINLVNPVITKAEGE-QEDDEGCLSVRDYRANVKRAATVTVCATDLDGNP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA CLQHE+DHL+G+LFIDH+SRLKR M  K++ +  + +
Sbjct: 120 FCLEADGLLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWAKQK 167


>gi|163803316|ref|ZP_02197194.1| peptide deformylase [Vibrio sp. AND4]
 gi|159172886|gb|EDP57725.1| peptide deformylase [Vibrio sp. AND4]
          Length = 172

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDVSET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|332525408|ref|ZP_08401568.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
 gi|332108677|gb|EGJ09901.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
          Length = 172

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L +V++P+  +++ +  L+ +MLE MY ++G+GLAA Q+ V  RL V
Sbjct: 1   MAQLPILRYPDPRLHKVAKPVAAVDARVKQLVADMLETMYESEGVGLAATQVDVHERLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         PMVF+NP+I+  S++  +++EGCLS+P     V R+A +TVR +D    
Sbjct: 61  MDTSP--EHDQPMVFVNPQIVARSEELVIWEEGCLSVPQVWDKVTRNARVTVRALDREGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  DGL A C QHE+DHL+G +F+++LS LKR+ I  KM+K  +  
Sbjct: 119 EFEIALDGLAAVCAQHEIDHLDGKVFVEYLSLLKRERIKVKMAKRTREE 167


>gi|260775015|ref|ZP_05883915.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609105|gb|EEX35264.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 173

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDERLRTVAKPVEKVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISET--RDQPMVLINPEILDKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|85060224|ref|YP_455926.1| peptide deformylase [Sodalis glossinidius str. 'morsitans']
 gi|123738923|sp|Q2NQQ4|DEF_SODGM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|84780744|dbj|BAE75521.1| polypeptide deformylase [Sodalis glossinidius str. 'morsitans']
          Length = 171

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V++P+  +N  I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSLLQVLHYPDERLRKVAKPVVDVNDAIRRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+++  S +  +  EGCLSIPD R  V R+  + V+ +D +  
Sbjct: 61  IDVSES--RDQRLVMINPELLEKSGETGID-EGCLSIPDQRGFVPRAEKVKVQALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +KM KL ++
Sbjct: 118 SFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKLARM 165


>gi|157148861|ref|YP_001456180.1| peptide deformylase [Citrobacter koseri ATCC BAA-895]
 gi|166198515|sp|A8AQI1|DEF_CITK8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157086066|gb|ABV15744.1| hypothetical protein CKO_04699 [Citrobacter koseri ATCC BAA-895]
          Length = 169

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 116/168 (69%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|160872447|ref|ZP_02062579.1| peptide deformylase [Rickettsiella grylli]
 gi|159121246|gb|EDP46584.1| peptide deformylase [Rickettsiella grylli]
          Length = 168

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PD  LR  +  I   ++ +  LID+M E MY+  GIGLAA QI +  +L V
Sbjct: 1   MAIYPIIQLPDVRLRVPTTSITVFDATLQQLIDDMFETMYAAKGIGLAAPQIAISKKLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+    ++ + +  INP I+    + ++ +EGCLS+P       R+ ++ ++ +D N +
Sbjct: 61  IDVT--NNKSHTLCLINPTIVEKKGE-ALLEEGCLSVPGIYDKAPRALWVKLQALDRNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I A+GLLA C+QHE+DHLNG LF+DHLS LK+ +  KK+ K+ + R
Sbjct: 118 PYEIEAEGLLAHCIQHEVDHLNGKLFLDHLSPLKQQLARKKLDKIKKRR 166


>gi|332991529|gb|AEF01584.1| peptide deformylase [Alteromonas sp. SN2]
          Length = 169

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++N DI  L+ +M E M   +GIGLAA Q+    ++VV
Sbjct: 1   MAILDVLSFPDERLRTVAKPVEEVNDDIKQLVSDMFETMKDENGIGLAATQVDRHVQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ +   +  P VFINP+I        + +EGCLS+P   A V+R+  ITV+ ++ N +
Sbjct: 61  MNVAE--DQDEPRVFINPEITKKDGST-ISEEGCLSVPGNYAKVERAEEITVKALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 AFELEADGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165


>gi|261250604|ref|ZP_05943179.1| peptide deformylase [Vibrio orientalis CIP 102891]
 gi|260939173|gb|EEX95160.1| peptide deformylase [Vibrio orientalis CIP 102891]
          Length = 172

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDISET--RDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|251788004|ref|YP_003002725.1| peptide deformylase [Dickeya zeae Ech1591]
 gi|247536625|gb|ACT05246.1| peptide deformylase [Dickeya zeae Ech1591]
          Length = 169

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 111/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+++  S D  + +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSE--ERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + 
Sbjct: 118 PFELEADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLARQ 165


>gi|297183538|gb|ADI19667.1| N-formylmethionyl-tRNA deformylase [uncultured Alteromonadales
           bacterium HF4000_16C08]
          Length = 169

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV
Sbjct: 1   MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +  P VFINP+I        + +EGCLS+P   A V+R+  ITV+ ++   +
Sbjct: 61  MDVSE--DQNEPRVFINPEITRKDGST-ISEEGCLSVPGNYAKVERAEAITVKALNEEGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 AFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKDARL 165


>gi|37528512|ref|NP_931857.1| peptide deformylase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|39930823|sp|Q7MYI2|DEF_PHOLL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|36787950|emb|CAE17067.1| polypeptide deformylase (PDF) (formylmethionine deformylase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 170

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 113/169 (66%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR ++ P+E ++++I  +ID+M E MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLHYPDERLRTIATPVETVDAEIRRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  + +  +V INP+++  S +  + +EGCLSIP+ RA V R+  + ++ +D N +
Sbjct: 61  IDVSETRNER--LVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIKALDYNGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + +
Sbjct: 118 PFELQADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLDKQK 166


>gi|320105840|ref|YP_004181430.1| peptide deformylase [Terriglobus saanensis SP1PR4]
 gi|319924361|gb|ADV81436.1| peptide deformylase [Terriglobus saanensis SP1PR4]
          Length = 169

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 106/169 (62%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ FPDP+L +V+ P+   +  +  L+D+M   MY+ +GIGLAA QI +  R+ +I
Sbjct: 1   MLYEIIKFPDPVLEKVAEPVTLFDDSLKKLVDDMFASMYAAEGIGLAAPQINISRRITII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL      +  +V INP++I   +     +EGCLS+PD R  V R+A++ VR  D   +H
Sbjct: 61  DLSFQKRPEEKIVLINPEVIAV-EGKQHEEEGCLSLPDIREKVTRAAWVKVRAQDATGKH 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +    LLA   QHE+DHLNGILFI  +SRLKRD++++++ K+++  +
Sbjct: 120 FEVEGTELLARAFQHEIDHLNGILFISKISRLKRDLVSRRIRKMMKNGE 168


>gi|224826194|ref|ZP_03699297.1| peptide deformylase [Lutiella nitroferrum 2002]
 gi|224601831|gb|EEG08011.1| peptide deformylase [Lutiella nitroferrum 2002]
          Length = 167

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 105/167 (62%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V+RP+  ++  I  LID+M E MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MALLTILHYPDERLHKVARPVGAVDERIRQLIDDMAETMYECNGIGLAATQVNVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +     F+NP+I+    D  VY+EGCLS+P     V RS ++ VR ++ N +
Sbjct: 61  IDVSE--EKSALTAFVNPEIVERRGDT-VYEEGCLSVPGIYDKVHRSEWVRVRALNRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I  DGLLA C+QHE+DHL+G +F+D+LS+LK+  I  KM K  +
Sbjct: 118 PFEIETDGLLAICIQHEIDHLDGKVFVDYLSQLKQSRIKAKMKKREK 164


>gi|258404153|ref|YP_003196895.1| peptide deformylase [Desulfohalobium retbaense DSM 5692]
 gi|257796380|gb|ACV67317.1| peptide deformylase [Desulfohalobium retbaense DSM 5692]
          Length = 167

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/163 (40%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +PDP+L R + P+ +I+ ++  L  +M+E MY+  GIGLAA Q+G  +RL+ +D+  
Sbjct: 5   ICTYPDPVLARRAEPVAEISEEVRQLASDMVETMYANQGIGLAAPQVGKSWRLITVDISG 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             ++   +  +NP+I     +    +EGCLS+P++R+ V+R+A + V   D +     + 
Sbjct: 65  PENQTELVTLVNPEIQWRDGETET-EEGCLSVPEFRSKVQRAAKVRVTGQDLDGNAVDME 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           ADGLLA CLQHE+DHL G + +DH+SRLKR M TKK+SK  + 
Sbjct: 124 ADGLLAVCLQHEIDHLEGTIILDHVSRLKRSMYTKKVSKWQKQ 166


>gi|190576007|ref|YP_001973852.1| peptide deformylase [Stenotrophomonas maltophilia K279a]
 gi|229487565|sp|B2FIR4|DEF_STRMK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190013929|emb|CAQ47569.1| putative peptide deformylase [Stenotrophomonas maltophilia K279a]
          Length = 170

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/170 (47%), Positives = 106/170 (62%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVS---RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +      E        LIDNM   MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +   +  P VFINP+I+       VYQEGCLS+P   ADV R+  ITV+Y+D 
Sbjct: 61  FMVIDVSE--EKNEPHVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           N Q Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K  +
Sbjct: 118 NGQEQQMEAGDVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167


>gi|90413779|ref|ZP_01221767.1| peptide deformylase [Photobacterium profundum 3TCK]
 gi|90325248|gb|EAS41745.1| peptide deformylase [Photobacterium profundum 3TCK]
          Length = 169

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+E I  +I N++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSLLQVLTFPDERLRTIAKPVEAITPEIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I     +  + +EGCLS+P  RA V R+A ++V+ +D +  
Sbjct: 61  IDISE--ERDQPMVLINPEITDKRGEDGI-EEGCLSVPGSRALVPRAAEVSVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  D
Sbjct: 118 PFSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFND 167


>gi|255067832|ref|ZP_05319687.1| peptide deformylase [Neisseria sicca ATCC 29256]
 gi|255047923|gb|EET43387.1| peptide deformylase [Neisseria sicca ATCC 29256]
          Length = 193

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 27  MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 87  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 143

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 144 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190


>gi|229524948|ref|ZP_04414353.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
 gi|229338529|gb|EEO03546.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
          Length = 194

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 26  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 86  IDISET--RDLPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQ 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192


>gi|134093408|ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicoxydans]
 gi|133737311|emb|CAL60354.1| Peptide deformylase (PDF) [Herminiimonas arsenicoxydans]
          Length = 176

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+   ++ I  L+ +M E MY   G+GLAA Q+ V  +++V
Sbjct: 1   MSILNILRYPDSRLHKIAKPVTTFDARIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R     +INP++I  S +  +Y EGCLS+P     V+R A + VR  D + +
Sbjct: 61  IDTSET--RTELRAYINPELIWVSPEMQIYDEGCLSVPGVYDGVERHAKVKVRAYDADGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G +F+++LS LKR+ I  KM K  + 
Sbjct: 119 QFELEAEGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKMLKEERE 166


>gi|254295706|ref|ZP_04963163.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
 gi|157805961|gb|EDO83131.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
          Length = 165

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID+ +
Sbjct: 4   ILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSE 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +    VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +   + 
Sbjct: 64  --DKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFELD 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 122 CEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 163


>gi|254523595|ref|ZP_05135650.1| peptide deformylase [Stenotrophomonas sp. SKA14]
 gi|219721186|gb|EED39711.1| peptide deformylase [Stenotrophomonas sp. SKA14]
          Length = 170

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/170 (47%), Positives = 106/170 (62%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVS---RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +      E        LIDNM   MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +   +  P VFINP+I+       VYQEGCLS+P   ADV R+  ITV+Y+D 
Sbjct: 61  FMVIDVSE--EKNEPHVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           N Q Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K  +
Sbjct: 118 NGQEQQLEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167


>gi|220903297|ref|YP_002478609.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867596|gb|ACL47931.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 172

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +PDP L+ V  P+ ++  +I  L  +MLE MY   G+GLAA Q+G   R++V+
Sbjct: 1   MILDIVTYPDPRLKEVCEPVAEVTDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQ 120
           D       +NP V INP +    ++    QEGCLS+P +YRADVKR + + +   D +  
Sbjct: 61  DPSAQKDERNPRVLINPVLTLSGEEIISEQEGCLSVPMNYRADVKRMSRVHLSATDLDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 +   A  +QHE DHL+GILFID +SRL+R +   K+ K ++ +
Sbjct: 121 AIEEDLEDFDAIVMQHEYDHLDGILFIDKVSRLRRSLYDSKVKKWLKRK 169


>gi|296535343|ref|ZP_06897545.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
 gi|296264327|gb|EFH10750.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
          Length = 177

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/166 (47%), Positives = 113/166 (68%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ PD  LR  +RP+   +++ +  L   ML  MY   GIGLAA QIG L RLVV+DL
Sbjct: 8   PILLVPDARLRAKARPVGPGDTETVRALAPRMLATMYKAPGIGLAAPQIGELLRLVVVDL 67

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           Q    +  P V INP+I+  S + S  +EGCLS+P+  A+V R A I VR++D     + 
Sbjct: 68  QP-DEKPEPYVMINPEIVAASTELSSREEGCLSLPNQYAEVTRPAEIKVRWLDLEGAKRE 126

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + ADGLLATC+QHE+DHLNG+LF+DHLS LKR+M+ +K++K ++ +
Sbjct: 127 MQADGLLATCIQHEIDHLNGVLFVDHLSALKRNMLLRKLAKELKAQ 172


>gi|91781430|ref|YP_556636.1| peptide deformylase [Burkholderia xenovorans LB400]
 gi|91685384|gb|ABE28584.1| peptide deformylase [Burkholderia xenovorans LB400]
          Length = 167

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSD--DHNELLTFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164


>gi|309785609|ref|ZP_07680240.1| peptide deformylase [Shigella dysenteriae 1617]
 gi|308926729|gb|EFP72205.1| peptide deformylase [Shigella dysenteriae 1617]
          Length = 169

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 116/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEGGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|296161362|ref|ZP_06844169.1| peptide deformylase [Burkholderia sp. Ch1-1]
 gi|295888348|gb|EFG68159.1| peptide deformylase [Burkholderia sp. Ch1-1]
          Length = 167

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSD--DHNELLAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164


>gi|254507283|ref|ZP_05119419.1| peptide deformylase [Vibrio parahaemolyticus 16]
 gi|219549743|gb|EED26732.1| peptide deformylase [Vibrio parahaemolyticus 16]
          Length = 172

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDISET--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|298290074|ref|YP_003692013.1| peptide deformylase [Starkeya novella DSM 506]
 gi|296926585|gb|ADH87394.1| peptide deformylase [Starkeya novella DSM 506]
          Length = 182

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/178 (50%), Positives = 128/178 (71%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S PI ++++ +  ++++M E MY   GIGLAAVQ+G+  R++ 
Sbjct: 1   MSIRPLVIIPDSRLRLISDPIVRVDARVRAIVEDMFETMYDAPGIGLAAVQVGIPERIIT 60

Query: 61  IDL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+        +    +KNP+  INP+II+ S++ SVY EGCLSIP+Y ADV+R A + V
Sbjct: 61  VDVVRREEGEEEGAEEKKNPIALINPEIISSSEEISVYSEGCLSIPEYYADVERPARVKV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           RYMD N + Q I ADGLLATC+QHE+DHLNG+LFIDH+S+LKRD + KK +K+ + ++
Sbjct: 121 RYMDLNGETQEIDADGLLATCVQHEIDHLNGVLFIDHISKLKRDRVMKKFTKIAKEKE 178


>gi|261346901|ref|ZP_05974545.1| peptide deformylase [Providencia rustigianii DSM 4541]
 gi|282564968|gb|EFB70503.1| peptide deformylase [Providencia rustigianii DSM 4541]
          Length = 173

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 111/169 (65%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK+++ I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNILHYPDERLRTIAKPVEKVDASIQRIVDDMFETMYDEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP++I    +  + +EGCLSIP+ +  V R+  + VR ++ N +
Sbjct: 61  IDVSES--RSERLVLINPELIDKKGETGI-EEGCLSIPEQQGFVARAEQVKVRALNYNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 118 LFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRQR 166


>gi|313203124|ref|YP_004041781.1| peptide deformylase [Paludibacter propionicigenes WB4]
 gi|312442440|gb|ADQ78796.1| peptide deformylase [Paludibacter propionicigenes WB4]
          Length = 183

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + + +LR+V+ PI     ++  LIDNM + MY  +G+GLAA Q+G+  RL+VI
Sbjct: 1   MILPIYTYGNAVLRKVAEPINADYPELNTLIDNMFQTMYHAEGVGLAAPQVGLPIRLLVI 60

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL      D       +  INP+I+  S++     EGCLSIP     V R+  I + Y+D
Sbjct: 61  DLAPFKEDDPELGAFKITMINPEILERSEEEVSGDEGCLSIPGIHETVSRAQSIKITYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + +      +G  A  +QHE DHL G LF DH++ ++R ++  K++ +V+ +
Sbjct: 121 PDFKEHTDVFEGYKARVVQHEYDHLEGHLFTDHVTPIRRQLLKSKLTNIVKGK 173


>gi|149185875|ref|ZP_01864190.1| Peptide deformylase [Erythrobacter sp. SD-21]
 gi|148830436|gb|EDL48872.1| Peptide deformylase [Erythrobacter sp. SD-21]
          Length = 188

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/186 (45%), Positives = 114/186 (61%), Gaps = 19/186 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS P+ + + ++  L+ +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILEVPDPRLKVVSEPVTEFDDELRELVSDMFETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDHAH-------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           IDLQ                       +K P VF+NP+I+  ++D + YQEGCLS+PD  
Sbjct: 61  IDLQPEDEDAEGEVCNHGGHEHVHYPTKKEPRVFVNPEILDPAEDLATYQEGCLSVPDIF 120

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           ADV R A   VRY D   +      +GL+ATCLQHE+DHL GILFIDHLSRLKR+M  KK
Sbjct: 121 ADVDRPATCRVRYQDLEGETHEEELEGLMATCLQHEMDHLEGILFIDHLSRLKRNMALKK 180

Query: 162 MSKLVQ 167
           + KL +
Sbjct: 181 LKKLRE 186


>gi|73543090|ref|YP_297610.1| peptide deformylase [Ralstonia eutropha JMP134]
 gi|72120503|gb|AAZ62766.1| peptide deformylase [Ralstonia eutropha JMP134]
          Length = 168

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+++++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVKEVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSET--RDALQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK++ I  K+ K  + R
Sbjct: 119 TFELDADDLLAVCIQHEMDHLLGKVFVEYLSPLKQNRIKSKLHKRERAR 167


>gi|325294662|ref|YP_004281176.1| peptide deformylase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065110|gb|ADY73117.1| Peptide deformylase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 177

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + + I+PD +L++ +  + + N ++  L+++M E MY   G+GLAA QIG+L ++VVI
Sbjct: 1   MIREIRIYPDDVLKKKAEVVTEFNEELEQLVNDMFETMYKRGGVGLAANQIGILKKVVVI 60

Query: 62  DLQDHAHR--KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DL     +  K  ++ INP+I+    +    +EGCLS+P     VKR+A+  V+  +   
Sbjct: 61  DLHSGKEKQGKEQIILINPEIVALEGEEVK-EEGCLSLPGLYKKVKRAAYAKVKAQNLKG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +  II  +GLLA   QHE+DHLNGI+FID LS L+R +  +K  KL +
Sbjct: 120 EEFIIEGEGLLARAFQHEIDHLNGIVFIDRLSPLQRRLALEKYKKLKR 167


>gi|77166461|ref|YP_344986.1| peptide deformylase [Nitrosococcus oceani ATCC 19707]
 gi|254435308|ref|ZP_05048815.1| peptide deformylase [Nitrosococcus oceani AFC27]
 gi|123593232|sp|Q3J6U0|DEF_NITOC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|76884775|gb|ABA59456.1| peptide deformylase [Nitrosococcus oceani ATCC 19707]
 gi|207088419|gb|EDZ65691.1| peptide deformylase [Nitrosococcus oceani AFC27]
          Length = 167

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAAVQ+ V  ++VV
Sbjct: 1   MAILNILHYPDPRLRRKAQPVAAVDKSIKKLADDMLETMYQAPGIGLAAVQVNVPKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   + +P+V INP+I+      +  +EGCLS+P+    V R+A ITV Y+D   Q
Sbjct: 61  IDISE--DKSSPLVLINPEIVAR-QGKAESEEGCLSVPEIFEPVTRAAEITVHYLDREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q +    LLATC+QHELDHL G LFID+ S LKR  I KK  K  +L
Sbjct: 118 KQELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165


>gi|281306913|pdb|2W3T|A Chain A, Chloro Complex Of The Ni-Form Of E.Coli Deformylase
 gi|281306914|pdb|2W3U|A Chain A, Formate Complex Of The Ni-Form Of E.Coli Deformylase
          Length = 188

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 116/167 (69%), Gaps = 3/167 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID
Sbjct: 2   VLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVID 61

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +  
Sbjct: 62  VSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 118

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 119 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165


>gi|88860597|ref|ZP_01135234.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           tunicata D2]
 gi|88817192|gb|EAR27010.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           tunicata D2]
          Length = 167

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ +++  I  ++ +M + MY   GIGLAA Q  +  R+VV
Sbjct: 1   MAFLEVLRFPDERLRTIAKPVTQVDDSIKKIVADMFDTMYEESGIGLAATQANIHLRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   + + +V INP+I        + +EGCLS+P+  A V R+  +TV+ ++ + Q
Sbjct: 61  IDVTE--DKSDQLVLINPEITKKDGST-ISEEGCLSVPNSYAKVDRAETVTVKALNLDGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LF+D+LS LKRD I KK+ K  ++
Sbjct: 118 EFSLDADGLLAICIQHELDHLQGKLFVDYLSPLKRDRIRKKLEKEAKM 165


>gi|238921409|ref|YP_002934924.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146]
 gi|259645180|sp|C5BF17|DEF_EDWI9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238870978|gb|ACR70689.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146]
          Length = 171

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 111/169 (65%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++    +  + +EGCLS+P+ RA V R+  I VR +D + +
Sbjct: 61  IDVSE--NRDQRLVLINPELLQHDGEAGI-EEGCLSVPEQRALVTRAENIKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + +
Sbjct: 118 SFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|241664932|ref|YP_002983292.1| peptide deformylase [Ralstonia pickettii 12D]
 gi|309780262|ref|ZP_07675013.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
 gi|240866959|gb|ACS64620.1| peptide deformylase [Ralstonia pickettii 12D]
 gi|308920965|gb|EFP66611.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
          Length = 171

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V+ EGCLS+PD    V R A + VR ++   +
Sbjct: 61  IDVSES--RDELRVFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + AD LLA C+QHE+DHL G +F+++LS LK+  I  K+ K  +
Sbjct: 119 TFELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKHQR 165


>gi|222054052|ref|YP_002536414.1| peptide deformylase [Geobacter sp. FRC-32]
 gi|221563341|gb|ACM19313.1| peptide deformylase [Geobacter sp. FRC-32]
          Length = 171

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 1/166 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K ++ FPDP L++  +P+  IN  +  L+ +M E MY   G+GLAA QIGV  R+VVI
Sbjct: 1   MIKKILTFPDPELKKKCQPVTVINDKVRELVRDMAETMYDAPGVGLAAPQIGVHQRVVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     +   +V INP I+    + +  +EGCLSIP Y A+V+R   + V+ ++   + 
Sbjct: 61  DVTGKDEQPQLLVAINPVIVHADGE-AYEEEGCLSIPKYAANVRRHERVVVKALNLEGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               ADGLLA   QHE+DHL+GILFIDH+S LKR++  +K  + ++
Sbjct: 120 VTFKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRRTME 165


>gi|206580091|ref|YP_002236311.1| peptide deformylase [Klebsiella pneumoniae 342]
 gi|288933300|ref|YP_003437359.1| peptide deformylase [Klebsiella variicola At-22]
 gi|290512102|ref|ZP_06551470.1| peptide deformylase [Klebsiella sp. 1_1_55]
 gi|238058213|sp|B5XNC4|DEF_KLEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|206569149|gb|ACI10925.1| peptide deformylase [Klebsiella pneumoniae 342]
 gi|288888029|gb|ADC56347.1| peptide deformylase [Klebsiella variicola At-22]
 gi|289775892|gb|EFD83892.1| peptide deformylase [Klebsiella sp. 1_1_55]
          Length = 169

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 115/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++   +  +V INP+++    +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENREER--LVLINPELLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|225075032|ref|ZP_03718231.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
           NRL30031/H210]
 gi|261380545|ref|ZP_05985118.1| peptide deformylase [Neisseria subflava NJ9703]
 gi|319639522|ref|ZP_07994269.1| peptide deformylase [Neisseria mucosa C102]
 gi|224953637|gb|EEG34846.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
           NRL30031/H210]
 gi|284796513|gb|EFC51860.1| peptide deformylase [Neisseria subflava NJ9703]
 gi|317399093|gb|EFV79767.1| peptide deformylase [Neisseria mucosa C102]
          Length = 167

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EKI+  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++HLS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164


>gi|148978497|ref|ZP_01814971.1| peptide deformylase [Vibrionales bacterium SWAT-3]
 gi|145962404|gb|EDK27684.1| peptide deformylase [Vibrionales bacterium SWAT-3]
          Length = 171

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 61  IDISET--RDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|269214256|ref|ZP_06158455.1| peptide deformylase [Neisseria lactamica ATCC 23970]
 gi|269210257|gb|EEZ76712.1| peptide deformylase [Neisseria lactamica ATCC 23970]
          Length = 181

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  +R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLSE--NRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQSRIKTKLKKRQK 178


>gi|15803814|ref|NP_289848.1| peptide deformylase [Escherichia coli O157:H7 EDL933]
 gi|15833406|ref|NP_312179.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai]
 gi|16131166|ref|NP_417745.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655]
 gi|26249871|ref|NP_755911.1| peptide deformylase [Escherichia coli CFT073]
 gi|82545649|ref|YP_409596.1| peptide deformylase [Shigella boydii Sb227]
 gi|82778584|ref|YP_404933.1| peptide deformylase [Shigella dysenteriae Sd197]
 gi|89110724|ref|AP_004504.1| peptide deformylase [Escherichia coli str. K-12 substr. W3110]
 gi|91212713|ref|YP_542699.1| peptide deformylase [Escherichia coli UTI89]
 gi|110643525|ref|YP_671255.1| peptide deformylase [Escherichia coli 536]
 gi|117625569|ref|YP_858892.1| peptide deformylase [Escherichia coli APEC O1]
 gi|157156138|ref|YP_001464754.1| peptide deformylase [Escherichia coli E24377A]
 gi|157162760|ref|YP_001460078.1| peptide deformylase [Escherichia coli HS]
 gi|168752265|ref|ZP_02777287.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113]
 gi|168758514|ref|ZP_02783521.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401]
 gi|168764969|ref|ZP_02789976.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501]
 gi|168769148|ref|ZP_02794155.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486]
 gi|168777856|ref|ZP_02802863.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196]
 gi|168783853|ref|ZP_02808860.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076]
 gi|168786176|ref|ZP_02811183.1| peptide deformylase [Escherichia coli O157:H7 str. EC869]
 gi|170018478|ref|YP_001723432.1| peptide deformylase [Escherichia coli ATCC 8739]
 gi|170082807|ref|YP_001732127.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170769511|ref|ZP_02903964.1| peptide deformylase [Escherichia albertii TW07627]
 gi|191169294|ref|ZP_03031043.1| peptide deformylase [Escherichia coli B7A]
 gi|191174456|ref|ZP_03035957.1| peptide deformylase [Escherichia coli F11]
 gi|193066484|ref|ZP_03047528.1| peptide deformylase [Escherichia coli E22]
 gi|193071544|ref|ZP_03052453.1| peptide deformylase [Escherichia coli E110019]
 gi|194430283|ref|ZP_03062778.1| peptide deformylase [Escherichia coli B171]
 gi|194435085|ref|ZP_03067323.1| peptide deformylase [Shigella dysenteriae 1012]
 gi|194439997|ref|ZP_03072055.1| peptide deformylase [Escherichia coli 101-1]
 gi|195939834|ref|ZP_03085216.1| peptide deformylase [Escherichia coli O157:H7 str. EC4024]
 gi|208806494|ref|ZP_03248831.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206]
 gi|208814593|ref|ZP_03255922.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045]
 gi|208821413|ref|ZP_03261733.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042]
 gi|209400361|ref|YP_002272743.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115]
 gi|209920752|ref|YP_002294836.1| peptide deformylase [Escherichia coli SE11]
 gi|215488586|ref|YP_002331017.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69]
 gi|217325115|ref|ZP_03441199.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588]
 gi|218550562|ref|YP_002384353.1| peptide deformylase [Escherichia fergusonii ATCC 35469]
 gi|218555844|ref|YP_002388757.1| peptide deformylase [Escherichia coli IAI1]
 gi|218560348|ref|YP_002393261.1| peptide deformylase [Escherichia coli S88]
 gi|218691573|ref|YP_002399785.1| peptide deformylase [Escherichia coli ED1a]
 gi|218696979|ref|YP_002404646.1| peptide deformylase [Escherichia coli 55989]
 gi|218706894|ref|YP_002414413.1| peptide deformylase [Escherichia coli UMN026]
 gi|227883418|ref|ZP_04001223.1| peptide deformylase [Escherichia coli 83972]
 gi|237703016|ref|ZP_04533497.1| peptide deformylase [Escherichia sp. 3_2_53FAA]
 gi|238902377|ref|YP_002928173.1| peptide deformylase [Escherichia coli BW2952]
 gi|253771890|ref|YP_003034721.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254038447|ref|ZP_04872503.1| peptide deformylase [Escherichia sp. 1_1_43]
 gi|254163214|ref|YP_003046322.1| peptide deformylase [Escherichia coli B str. REL606]
 gi|254795223|ref|YP_003080060.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359]
 gi|256020645|ref|ZP_05434510.1| peptide deformylase [Shigella sp. D9]
 gi|256025986|ref|ZP_05439851.1| peptide deformylase [Escherichia sp. 4_1_40B]
 gi|260846084|ref|YP_003223862.1| peptide deformylase [Escherichia coli O103:H2 str. 12009]
 gi|261224591|ref|ZP_05938872.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254515|ref|ZP_05947048.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK966]
 gi|293406884|ref|ZP_06650808.1| peptide deformylase [Escherichia coli FVEC1412]
 gi|293412705|ref|ZP_06655373.1| peptide deformylase [Escherichia coli B354]
 gi|293416705|ref|ZP_06659342.1| peptide deformylase [Escherichia coli B185]
 gi|293453605|ref|ZP_06664024.1| peptide deformylase [Escherichia coli B088]
 gi|297517904|ref|ZP_06936290.1| peptide deformylase [Escherichia coli OP50]
 gi|298382625|ref|ZP_06992220.1| def [Escherichia coli FVEC1302]
 gi|300815503|ref|ZP_07095728.1| peptide deformylase [Escherichia coli MS 107-1]
 gi|300896634|ref|ZP_07115151.1| peptide deformylase [Escherichia coli MS 198-1]
 gi|300903535|ref|ZP_07121457.1| peptide deformylase [Escherichia coli MS 84-1]
 gi|300918261|ref|ZP_07134865.1| peptide deformylase [Escherichia coli MS 115-1]
 gi|300921905|ref|ZP_07138060.1| peptide deformylase [Escherichia coli MS 182-1]
 gi|300932179|ref|ZP_07147459.1| peptide deformylase [Escherichia coli MS 187-1]
 gi|300973966|ref|ZP_07172373.1| peptide deformylase [Escherichia coli MS 200-1]
 gi|300979823|ref|ZP_07174725.1| peptide deformylase [Escherichia coli MS 45-1]
 gi|301018856|ref|ZP_07183095.1| peptide deformylase [Escherichia coli MS 69-1]
 gi|301021204|ref|ZP_07185238.1| peptide deformylase [Escherichia coli MS 196-1]
 gi|301046057|ref|ZP_07193236.1| peptide deformylase [Escherichia coli MS 185-1]
 gi|301305496|ref|ZP_07211588.1| peptide deformylase [Escherichia coli MS 124-1]
 gi|301325148|ref|ZP_07218680.1| peptide deformylase [Escherichia coli MS 78-1]
 gi|301643894|ref|ZP_07243924.1| peptide deformylase [Escherichia coli MS 146-1]
 gi|306816371|ref|ZP_07450509.1| peptide deformylase [Escherichia coli NC101]
 gi|307139969|ref|ZP_07499325.1| peptide deformylase [Escherichia coli H736]
 gi|307315135|ref|ZP_07594718.1| peptide deformylase [Escherichia coli W]
 gi|309794562|ref|ZP_07688984.1| peptide deformylase [Escherichia coli MS 145-7]
 gi|312968388|ref|ZP_07782598.1| peptide deformylase [Escherichia coli 2362-75]
 gi|312972452|ref|ZP_07786626.1| peptide deformylase [Escherichia coli 1827-70]
 gi|331643982|ref|ZP_08345111.1| peptide deformylase [Escherichia coli H736]
 gi|331649083|ref|ZP_08350169.1| peptide deformylase [Escherichia coli M605]
 gi|331654879|ref|ZP_08355878.1| peptide deformylase [Escherichia coli M718]
 gi|331659577|ref|ZP_08360515.1| peptide deformylase [Escherichia coli TA206]
 gi|331664899|ref|ZP_08365800.1| peptide deformylase [Escherichia coli TA143]
 gi|331670116|ref|ZP_08370955.1| peptide deformylase [Escherichia coli TA271]
 gi|331679355|ref|ZP_08380025.1| peptide deformylase [Escherichia coli H591]
 gi|332281841|ref|ZP_08394254.1| peptide deformylase [Shigella sp. D9]
 gi|62288071|sp|P0A6K3|DEF_ECOLI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62288072|sp|P0A6K4|DEF_ECOL6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62288073|sp|P0A6K5|DEF_ECO57 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122990717|sp|Q1R646|DEF_ECOUT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123048786|sp|Q0TCH5|DEF_ECOL5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123728325|sp|Q31VZ0|DEF_SHIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123769545|sp|Q32B63|DEF_SHIDS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512616|sp|A1AGH8|DEF_ECOK1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167012062|sp|A8A591|DEF_ECOHS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083070|sp|B1IQ13|DEF_ECOLC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229487486|sp|B1X6D9|DEF_ECODH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238058209|sp|B6I200|DEF_ECOSE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238058220|sp|B5YT06|DEF_ECO5E RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767581|sp|B7UK10|DEF_ECO27 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767582|sp|B7MCQ2|DEF_ECO45 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767583|sp|B7LHY3|DEF_ECO55 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767585|sp|B7N171|DEF_ECO81 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767586|sp|B7M0Z2|DEF_ECO8A RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767587|sp|B7NDQ8|DEF_ECOLU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767589|sp|B7LRQ3|DEF_ESCF3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|259645179|sp|C4ZUE1|DEF_ECOBW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|266618787|pdb|3K6L|A Chain A, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|266618788|pdb|3K6L|B Chain B, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|266618789|pdb|3K6L|C Chain C, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|12517916|gb|AAG58408.1|AE005556_1 peptide deformylase [Escherichia coli O157:H7 str. EDL933]
 gi|26110299|gb|AAN82485.1|AE016767_245 Peptide deformylase [Escherichia coli CFT073]
 gi|41474|emb|CAA45206.1| fms [Escherichia coli K-12]
 gi|443989|emb|CAA54367.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli K-12]
 gi|471304|emb|CAA54826.1| deformylase [Escherichia coli]
 gi|606221|gb|AAA58084.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|1789682|gb|AAC76312.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655]
 gi|13363625|dbj|BAB37575.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai]
 gi|81242732|gb|ABB63442.1| peptide deformylase [Shigella dysenteriae Sd197]
 gi|81247060|gb|ABB67768.1| peptide deformylase [Shigella boydii Sb227]
 gi|85676755|dbj|BAE78005.1| peptide deformylase [Escherichia coli str. K12 substr. W3110]
 gi|91074287|gb|ABE09168.1| peptide deformylase [Escherichia coli UTI89]
 gi|110345117|gb|ABG71354.1| peptide deformylase [Escherichia coli 536]
 gi|115514693|gb|ABJ02768.1| peptide deformylase [Escherichia coli APEC O1]
 gi|157068440|gb|ABV07695.1| peptide deformylase [Escherichia coli HS]
 gi|157078168|gb|ABV17876.1| peptide deformylase [Escherichia coli E24377A]
 gi|169753406|gb|ACA76105.1| peptide deformylase [Escherichia coli ATCC 8739]
 gi|169890642|gb|ACB04349.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170121568|gb|EDS90499.1| peptide deformylase [Escherichia albertii TW07627]
 gi|187766994|gb|EDU30838.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196]
 gi|188013857|gb|EDU51979.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113]
 gi|188998869|gb|EDU67855.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076]
 gi|189354695|gb|EDU73114.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401]
 gi|189361833|gb|EDU80252.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486]
 gi|189365123|gb|EDU83539.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501]
 gi|189374112|gb|EDU92528.1| peptide deformylase [Escherichia coli O157:H7 str. EC869]
 gi|190900649|gb|EDV60449.1| peptide deformylase [Escherichia coli B7A]
 gi|190905264|gb|EDV64902.1| peptide deformylase [Escherichia coli F11]
 gi|192925865|gb|EDV80515.1| peptide deformylase [Escherichia coli E22]
 gi|192955132|gb|EDV85626.1| peptide deformylase [Escherichia coli E110019]
 gi|194411672|gb|EDX27999.1| peptide deformylase [Escherichia coli B171]
 gi|194416692|gb|EDX32823.1| peptide deformylase [Shigella dysenteriae 1012]
 gi|194421049|gb|EDX37078.1| peptide deformylase [Escherichia coli 101-1]
 gi|208726295|gb|EDZ75896.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206]
 gi|208735870|gb|EDZ84557.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045]
 gi|208741536|gb|EDZ89218.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042]
 gi|209161761|gb|ACI39194.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115]
 gi|209757358|gb|ACI76991.1| peptide deformylase [Escherichia coli]
 gi|209757360|gb|ACI76992.1| peptide deformylase [Escherichia coli]
 gi|209757362|gb|ACI76993.1| peptide deformylase [Escherichia coli]
 gi|209757366|gb|ACI76995.1| peptide deformylase [Escherichia coli]
 gi|209914011|dbj|BAG79085.1| polypeptide deformylase [Escherichia coli SE11]
 gi|215266658|emb|CAS11097.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69]
 gi|217321336|gb|EEC29760.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588]
 gi|218353711|emb|CAU99982.1| peptide deformylase [Escherichia coli 55989]
 gi|218358103|emb|CAQ90750.1| peptide deformylase [Escherichia fergusonii ATCC 35469]
 gi|218362612|emb|CAR00238.1| peptide deformylase [Escherichia coli IAI1]
 gi|218367117|emb|CAR04891.1| peptide deformylase [Escherichia coli S88]
 gi|218429137|emb|CAR10089.2| peptide deformylase [Escherichia coli ED1a]
 gi|218433991|emb|CAR14908.1| peptide deformylase [Escherichia coli UMN026]
 gi|222034995|emb|CAP77738.1| Peptide deformylase [Escherichia coli LF82]
 gi|226838953|gb|EEH70976.1| peptide deformylase [Escherichia sp. 1_1_43]
 gi|226902280|gb|EEH88539.1| peptide deformylase [Escherichia sp. 3_2_53FAA]
 gi|227839562|gb|EEJ50028.1| peptide deformylase [Escherichia coli 83972]
 gi|238861987|gb|ACR63985.1| peptide deformylase [Escherichia coli BW2952]
 gi|242378813|emb|CAQ33605.1| peptide deformylase [Escherichia coli BL21(DE3)]
 gi|253322934|gb|ACT27536.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975115|gb|ACT40786.1| peptide deformylase [Escherichia coli B str. REL606]
 gi|253979271|gb|ACT44941.1| peptide deformylase [Escherichia coli BL21(DE3)]
 gi|254594623|gb|ACT73984.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359]
 gi|257761231|dbj|BAI32728.1| peptide deformylase [Escherichia coli O103:H2 str. 12009]
 gi|260447695|gb|ACX38117.1| peptide deformylase [Escherichia coli DH1]
 gi|281180321|dbj|BAI56651.1| polypeptide deformylase [Escherichia coli SE15]
 gi|284923293|emb|CBG36387.1| polypeptide deformylase [Escherichia coli 042]
 gi|291321731|gb|EFE61162.1| peptide deformylase [Escherichia coli B088]
 gi|291425695|gb|EFE98729.1| peptide deformylase [Escherichia coli FVEC1412]
 gi|291431281|gb|EFF04266.1| peptide deformylase [Escherichia coli B185]
 gi|291468352|gb|EFF10845.1| peptide deformylase [Escherichia coli B354]
 gi|294491738|gb|ADE90494.1| peptide deformylase [Escherichia coli IHE3034]
 gi|298276461|gb|EFI17979.1| def [Escherichia coli FVEC1302]
 gi|299881612|gb|EFI89823.1| peptide deformylase [Escherichia coli MS 196-1]
 gi|300301942|gb|EFJ58327.1| peptide deformylase [Escherichia coli MS 185-1]
 gi|300308976|gb|EFJ63496.1| peptide deformylase [Escherichia coli MS 200-1]
 gi|300359511|gb|EFJ75381.1| peptide deformylase [Escherichia coli MS 198-1]
 gi|300399513|gb|EFJ83051.1| peptide deformylase [Escherichia coli MS 69-1]
 gi|300404408|gb|EFJ87946.1| peptide deformylase [Escherichia coli MS 84-1]
 gi|300409429|gb|EFJ92967.1| peptide deformylase [Escherichia coli MS 45-1]
 gi|300414522|gb|EFJ97832.1| peptide deformylase [Escherichia coli MS 115-1]
 gi|300421706|gb|EFK05017.1| peptide deformylase [Escherichia coli MS 182-1]
 gi|300460063|gb|EFK23556.1| peptide deformylase [Escherichia coli MS 187-1]
 gi|300532395|gb|EFK53457.1| peptide deformylase [Escherichia coli MS 107-1]
 gi|300839191|gb|EFK66951.1| peptide deformylase [Escherichia coli MS 124-1]
 gi|300847980|gb|EFK75740.1| peptide deformylase [Escherichia coli MS 78-1]
 gi|301077737|gb|EFK92543.1| peptide deformylase [Escherichia coli MS 146-1]
 gi|305850767|gb|EFM51224.1| peptide deformylase [Escherichia coli NC101]
 gi|306905484|gb|EFN36019.1| peptide deformylase [Escherichia coli W]
 gi|307555374|gb|ADN48149.1| peptide deformylase [Escherichia coli ABU 83972]
 gi|307628321|gb|ADN72625.1| peptide deformylase [Escherichia coli UM146]
 gi|308121612|gb|EFO58874.1| peptide deformylase [Escherichia coli MS 145-7]
 gi|309703698|emb|CBJ03039.1| polypeptide deformylase [Escherichia coli ETEC H10407]
 gi|310334829|gb|EFQ01034.1| peptide deformylase [Escherichia coli 1827-70]
 gi|312287213|gb|EFR15123.1| peptide deformylase [Escherichia coli 2362-75]
 gi|312947837|gb|ADR28664.1| peptide deformylase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315062578|gb|ADT76905.1| peptide deformylase [Escherichia coli W]
 gi|315137862|dbj|BAJ45021.1| peptide deformylase [Escherichia coli DH1]
 gi|315255870|gb|EFU35838.1| peptide deformylase [Escherichia coli MS 85-1]
 gi|315284579|gb|EFU44024.1| peptide deformylase [Escherichia coli MS 110-3]
 gi|315292338|gb|EFU51690.1| peptide deformylase [Escherichia coli MS 153-1]
 gi|315297152|gb|EFU56432.1| peptide deformylase [Escherichia coli MS 16-3]
 gi|315617089|gb|EFU97699.1| peptide deformylase [Escherichia coli 3431]
 gi|320173931|gb|EFW49107.1| Peptide deformylase [Shigella dysenteriae CDC 74-1112]
 gi|320182716|gb|EFW57602.1| Peptide deformylase [Shigella boydii ATCC 9905]
 gi|320187008|gb|EFW61720.1| Peptide deformylase [Shigella flexneri CDC 796-83]
 gi|320191679|gb|EFW66329.1| Peptide deformylase [Escherichia coli O157:H7 str. EC1212]
 gi|320195378|gb|EFW70005.1| Peptide deformylase [Escherichia coli WV_060327]
 gi|320199474|gb|EFW74064.1| Peptide deformylase [Escherichia coli EC4100B]
 gi|320639591|gb|EFX09185.1| peptide deformylase [Escherichia coli O157:H7 str. G5101]
 gi|320645089|gb|EFX14105.1| peptide deformylase [Escherichia coli O157:H- str. 493-89]
 gi|320650400|gb|EFX18866.1| peptide deformylase [Escherichia coli O157:H- str. H 2687]
 gi|320655925|gb|EFX23845.1| peptide deformylase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320666399|gb|EFX33382.1| peptide deformylase [Escherichia coli O157:H7 str. LSU-61]
 gi|323162965|gb|EFZ48800.1| peptide deformylase [Escherichia coli E128010]
 gi|323182765|gb|EFZ68166.1| peptide deformylase [Escherichia coli 1357]
 gi|323189108|gb|EFZ74392.1| peptide deformylase [Escherichia coli RN587/1]
 gi|323376835|gb|ADX49103.1| peptide deformylase [Escherichia coli KO11]
 gi|323934515|gb|EGB30923.1| peptide deformylase [Escherichia coli E1520]
 gi|323939292|gb|EGB35504.1| peptide deformylase [Escherichia coli E482]
 gi|323944293|gb|EGB40369.1| peptide deformylase [Escherichia coli H120]
 gi|323950200|gb|EGB46082.1| peptide deformylase [Escherichia coli H252]
 gi|323954591|gb|EGB50374.1| peptide deformylase [Escherichia coli H263]
 gi|323966248|gb|EGB61683.1| peptide deformylase [Escherichia coli M863]
 gi|323970090|gb|EGB65364.1| peptide deformylase [Escherichia coli TA007]
 gi|323974761|gb|EGB69874.1| peptide deformylase [Escherichia coli TW10509]
 gi|324009052|gb|EGB78271.1| peptide deformylase [Escherichia coli MS 57-2]
 gi|324014963|gb|EGB84182.1| peptide deformylase [Escherichia coli MS 60-1]
 gi|324111965|gb|EGC05944.1| peptide deformylase [Escherichia fergusonii B253]
 gi|324116324|gb|EGC10244.1| peptide deformylase [Escherichia coli E1167]
 gi|326342535|gb|EGD66309.1| Peptide deformylase [Escherichia coli O157:H7 str. 1044]
 gi|326344522|gb|EGD68271.1| Peptide deformylase [Escherichia coli O157:H7 str. 1125]
 gi|327250935|gb|EGE62628.1| peptide deformylase [Escherichia coli STEC_7v]
 gi|330909331|gb|EGH37845.1| peptide deformylase [Escherichia coli AA86]
 gi|331036276|gb|EGI08502.1| peptide deformylase [Escherichia coli H736]
 gi|331041581|gb|EGI13725.1| peptide deformylase [Escherichia coli M605]
 gi|331046894|gb|EGI18972.1| peptide deformylase [Escherichia coli M718]
 gi|331052792|gb|EGI24825.1| peptide deformylase [Escherichia coli TA206]
 gi|331057409|gb|EGI29395.1| peptide deformylase [Escherichia coli TA143]
 gi|331062178|gb|EGI34098.1| peptide deformylase [Escherichia coli TA271]
 gi|331072527|gb|EGI43852.1| peptide deformylase [Escherichia coli H591]
 gi|332085435|gb|EGI90601.1| peptide deformylase [Shigella boydii 5216-82]
 gi|332086260|gb|EGI91416.1| peptide deformylase [Shigella dysenteriae 155-74]
 gi|332090315|gb|EGI95413.1| peptide deformylase [Shigella boydii 3594-74]
 gi|332104193|gb|EGJ07539.1| peptide deformylase [Shigella sp. D9]
 gi|332345234|gb|AEE58568.1| peptide deformylase [Escherichia coli UMNK88]
          Length = 169

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 117/169 (69%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|38639603|ref|NP_943372.1| peptide deformylase [Klebsiella pneumoniae]
 gi|168998831|ref|YP_001688099.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044]
 gi|262040714|ref|ZP_06013948.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|38016701|gb|AAR07722.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae]
 gi|238549851|dbj|BAH66202.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259041938|gb|EEW42975.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 169

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 117/170 (68%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R ++   +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALNRYGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+D
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167


>gi|296134589|ref|YP_003641831.1| peptide deformylase [Thiomonas intermedia K12]
 gi|295794711|gb|ADG29501.1| peptide deformylase [Thiomonas intermedia K12]
          Length = 168

 Score =  207 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  V++P+  ++  +  L+  M E MY+++G+GLAA Q+ V  R++V
Sbjct: 1   MEQLTILQYPDPRLYIVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P+  INP+I+  S +   ++EGCLS+P     V R A + VR +D   Q
Sbjct: 61  MDTSEQ--RNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A C+QHE+DHL G +F+D+LS LKR+ I  KM K  + 
Sbjct: 119 PFEMDADGLTAVCIQHEMDHLMGKVFVDYLSPLKRNRIKTKMLKRQRQ 166


>gi|241760428|ref|ZP_04758522.1| peptide deformylase [Neisseria flavescens SK114]
 gi|241319097|gb|EER55590.1| peptide deformylase [Neisseria flavescens SK114]
          Length = 167

 Score =  207 bits (528), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EKI+  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++HLS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164


>gi|329913547|ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545311|gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
          Length = 177

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +++RP+   +  +  L+ +M E MY   G+GLA+ Q+ V  +L++
Sbjct: 1   MPLLNILRYPDPRLHKIARPVTVFDDRLKQLVADMAETMYDAPGVGLASSQVDVHEQLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D  ++    V INP+I   S +  +Y EGCLS+P     V+R A I VR +D + +
Sbjct: 61  VDISD--NQSELRVLINPEITWASTEMQLYDEGCLSVPGVYDGVERHARIKVRALDVDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHE+DHL G +F+++LS LKR+ I  KM K  + 
Sbjct: 119 EFDTTADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERE 166


>gi|149190435|ref|ZP_01868706.1| peptide deformylase [Vibrio shilonii AK1]
 gi|148835689|gb|EDL52655.1| peptide deformylase [Vibrio shilonii AK1]
          Length = 169

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 107/167 (64%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKVVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R  PMV INP+I     +  + +EGCLS+P  RA V R+A ++V+ ++ + +
Sbjct: 61  IDISDT--RDQPMVLINPEITEKRGEDGI-EEGCLSVPGARALVPRAAEVSVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K+ K+ +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKDKLEKIKR 164


>gi|83404829|ref|YP_424843.1| peptide deformylase [Escherichia coli]
 gi|157149370|ref|YP_001451409.1| peptide deformylase [Escherichia coli E24377A]
 gi|298206469|ref|YP_003717571.1| peptide deformylase [Escherichia coli ETEC 1392/75]
 gi|83308554|emb|CAI79523.1| peptide deformylase [Escherichia coli]
 gi|157076537|gb|ABV16250.1| peptide deformylase [Escherichia coli E24377A]
 gi|297374341|emb|CBL93313.1| peptide deformylase [Escherichia coli ETEC 1392/75]
          Length = 169

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 116/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|91791393|ref|YP_561044.1| peptide deformylase [Shewanella denitrificans OS217]
 gi|91713395|gb|ABE53321.1| peptide deformylase [Shewanella denitrificans OS217]
          Length = 170

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR ++ P+      +   ID+M+E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MPLLNVLRFPDERLRTIAVPVTDFGPQLQAQIDSMIETMYAEKGIGLAASQVDFHQQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P +FINP+I+  S +FS  +EGCLS+P   A V R+ F+T++ +D + +
Sbjct: 61  MDLQDDIER--PKIFINPEIVAKSGEFS-NEEGCLSVPGVYAKVDRAEFVTLKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD L A C+QHE+DHL G LF+D+LS LKR  I  K+ K  +L 
Sbjct: 118 PFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARLE 166


>gi|238021725|ref|ZP_04602151.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147]
 gi|237866339|gb|EEP67381.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147]
          Length = 167

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 105/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  P+  L  V++P+ +++  I  L+ +M E MY++ GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILTHPNERLHIVAQPVAQVDERIRTLVQDMAETMYASKGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   +   +  INP I     +   Y+EGCLS+P    +V R+  ITV ++D    
Sbjct: 61  IDLSE--EKNQLLALINPVITKKDGET-TYEEGCLSVPGIYEEVTRAETITVEFLDIQGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q + ADGLLA C+QHELDHLNG LF+++LS LK++ I  KM K  + R+
Sbjct: 118 KQTLDADGLLAICVQHELDHLNGKLFVEYLSPLKQNRIKTKMKK--RQRE 165


>gi|312882739|ref|ZP_07742474.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369597|gb|EFP97114.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 173

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVATPVENVTPEIQKFVDDMIETMYDEEGIGLAATQVDCHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +  + +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDVSET--RDQPMVLINPEILDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLTKIKRFNE 167


>gi|187732040|ref|YP_001881970.1| peptide deformylase [Shigella boydii CDC 3083-94]
 gi|238689490|sp|B2U2Q4|DEF_SHIB3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|187429032|gb|ACD08306.1| peptide deformylase [Shigella boydii CDC 3083-94]
          Length = 169

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 116/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP  RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPKQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|163751680|ref|ZP_02158899.1| polypeptide deformylase [Shewanella benthica KT99]
 gi|161328419|gb|EDP99575.1| polypeptide deformylase [Shewanella benthica KT99]
          Length = 170

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ + N+ +   I+NM E MY   G+GLAA Q+    +L++
Sbjct: 1   MSLLKILRFPDERLRTLAKPVTEFNTGLQTQINNMFETMYEDKGVGLAATQVDYHRQLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFIN +I+  S  FS  +EGCLS+P + AD++R+  +T++ +D +  
Sbjct: 61  MDLQDEEER--PKVFINLEIVASSGHFS-NEEGCLSVPGFYADIERAEHVTIKALDRDGI 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGL A CLQHELDHL G LF+D+LS LKR  I +K+ K  +L 
Sbjct: 118 EFTLDADGLFAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARLE 166


>gi|54310617|ref|YP_131637.1| peptide deformylase [Photobacterium profundum SS9]
 gi|46915060|emb|CAG21835.1| Putative polypeptide deformylase [Photobacterium profundum SS9]
          Length = 169

 Score =  207 bits (528), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++IFPD  LR +++P+E I  DI N++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSLLQVLIFPDERLRTIAKPVEAITPDIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I     +  + +EGCLS+P  RA V R+A ++V+ +D +  
Sbjct: 61  IDISE--ERDQPMVLINPEITDKRGEDGI-EEGCLSVPGSRALVSRAAEVSVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 PFSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFNE 167


>gi|152972195|ref|YP_001337341.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238896783|ref|YP_002921528.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044]
 gi|330002243|ref|ZP_08304254.1| peptide deformylase [Klebsiella sp. MS 92-3]
 gi|166198519|sp|A6TEU0|DEF_KLEP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|150957044|gb|ABR79074.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238549110|dbj|BAH65461.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537382|gb|EGF63631.1| peptide deformylase [Klebsiella sp. MS 92-3]
          Length = 169

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 116/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R+  +V INP+++    +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NREEQLVLINPEMLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|300946508|ref|ZP_07160774.1| peptide deformylase [Escherichia coli MS 116-1]
 gi|300955324|ref|ZP_07167706.1| peptide deformylase [Escherichia coli MS 175-1]
 gi|300317768|gb|EFJ67552.1| peptide deformylase [Escherichia coli MS 175-1]
 gi|300453814|gb|EFK17434.1| peptide deformylase [Escherichia coli MS 116-1]
          Length = 169

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 116/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +  +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKICALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|292489813|ref|YP_003532703.1| peptide deformylase [Erwinia amylovora CFBP1430]
 gi|292900855|ref|YP_003540224.1| polypeptide deformylase [Erwinia amylovora ATCC 49946]
 gi|291200703|emb|CBJ47836.1| polypeptide deformylase [Erwinia amylovora ATCC 49946]
 gi|291555250|emb|CBA23521.1| peptide deformylase [Erwinia amylovora CFBP1430]
 gi|312173996|emb|CBX82249.1| peptide deformylase [Erwinia amylovora ATCC BAA-2158]
          Length = 169

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 113/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSES--RDERLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SFELEADGLLAICIQHELDHLVGKLFIDYLSPMKRQRIRQKLEKLHRQ 165


>gi|114561212|ref|YP_748725.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
 gi|114332505|gb|ABI69887.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
          Length = 188

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+      +   IDNMLE MY   GIGLAA Q+    +L+V
Sbjct: 19  MPLLNVLRFPDERLRTIAQPVTDFGPQLQTQIDNMLETMYLEKGIGLAATQVDFHQQLIV 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P +FINP+I+  S D +  +EGCLS+P   A V R+ F+T++ +D + +
Sbjct: 79  MDLQDEVER--PTIFINPQIVASSGDLA-NEEGCLSVPGIYAKVDRAEFVTLKALDRHGK 135

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 136 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARL 183


>gi|300705526|ref|YP_003747129.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
 gi|299073190|emb|CBJ44548.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
          Length = 169

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA QI V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGVGLAATQIDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSES--RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLER 167


>gi|24114564|ref|NP_709074.1| peptide deformylase [Shigella flexneri 2a str. 301]
 gi|30064608|ref|NP_838779.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
 gi|74313805|ref|YP_312224.1| peptide deformylase [Shigella sonnei Ss046]
 gi|110807134|ref|YP_690654.1| peptide deformylase [Shigella flexneri 5 str. 8401]
 gi|170680840|ref|YP_001745549.1| peptide deformylase [Escherichia coli SMS-3-5]
 gi|218702049|ref|YP_002409678.1| peptide deformylase [Escherichia coli IAI39]
 gi|260857407|ref|YP_003231298.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
 gi|260870029|ref|YP_003236431.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
 gi|300935284|ref|ZP_07150295.1| peptide deformylase [Escherichia coli MS 21-1]
 gi|331674794|ref|ZP_08375551.1| peptide deformylase [Escherichia coli TA280]
 gi|331684929|ref|ZP_08385515.1| peptide deformylase [Escherichia coli H299]
 gi|39930879|sp|Q83PZ1|DEF_SHIFL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122957164|sp|Q0T016|DEF_SHIF8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123773439|sp|Q3YWX3|DEF_SHISS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767584|sp|B7NLK6|DEF_ECO7I RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767588|sp|B1LGP3|DEF_ECOSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|24053759|gb|AAN44781.1| peptide deformylase [Shigella flexneri 2a str. 301]
 gi|30042867|gb|AAP18590.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
 gi|73857282|gb|AAZ89989.1| peptide deformylase [Shigella sonnei Ss046]
 gi|110616682|gb|ABF05349.1| peptide deformylase [Shigella flexneri 5 str. 8401]
 gi|170518558|gb|ACB16736.1| peptide deformylase [Escherichia coli SMS-3-5]
 gi|218372035|emb|CAR19895.1| peptide deformylase [Escherichia coli IAI39]
 gi|257756056|dbj|BAI27558.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
 gi|257766385|dbj|BAI37880.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
 gi|281602655|gb|ADA75639.1| putative N-formylmethionyl-tRNA deformylase [Shigella flexneri
           2002017]
 gi|300459487|gb|EFK22980.1| peptide deformylase [Escherichia coli MS 21-1]
 gi|323154124|gb|EFZ40327.1| peptide deformylase [Escherichia coli EPECa14]
 gi|323164851|gb|EFZ50642.1| peptide deformylase [Shigella sonnei 53G]
 gi|323179177|gb|EFZ64751.1| peptide deformylase [Escherichia coli 1180]
 gi|331067703|gb|EGI39101.1| peptide deformylase [Escherichia coli TA280]
 gi|331077300|gb|EGI48512.1| peptide deformylase [Escherichia coli H299]
 gi|332749605|gb|EGJ80022.1| peptide deformylase [Shigella flexneri K-671]
 gi|332753999|gb|EGJ84372.1| peptide deformylase [Shigella flexneri 2747-71]
 gi|332996761|gb|EGK16386.1| peptide deformylase [Shigella flexneri K-272]
 gi|332998313|gb|EGK17913.1| peptide deformylase [Shigella flexneri K-218]
 gi|333012534|gb|EGK31915.1| peptide deformylase [Shigella flexneri K-304]
 gi|333014514|gb|EGK33862.1| peptide deformylase [Shigella flexneri K-227]
          Length = 169

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 117/169 (69%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|259909966|ref|YP_002650322.1| peptide deformylase [Erwinia pyrifoliae Ep1/96]
 gi|224965588|emb|CAX57120.1| Peptide deformylase [Erwinia pyrifoliae Ep1/96]
 gi|283480066|emb|CAY75982.1| peptide deformylase [Erwinia pyrifoliae DSM 12163]
 gi|310765564|gb|ADP10514.1| peptide deformylase [Erwinia sp. Ejp617]
          Length = 169

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SVELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165


>gi|187922316|ref|YP_001893958.1| peptide deformylase [Burkholderia phytofirmans PsJN]
 gi|187713510|gb|ACD14734.1| peptide deformylase [Burkholderia phytofirmans PsJN]
          Length = 167

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++ 
Sbjct: 1   MALLNILNYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSD--DHNELLAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164


>gi|197287101|ref|YP_002152973.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227354903|ref|ZP_03839317.1| polypeptide deformylase [Proteus mirabilis ATCC 29906]
 gi|194684588|emb|CAR46445.1| polypeptide deformylase [Proteus mirabilis HI4320]
 gi|227164985|gb|EEI49824.1| polypeptide deformylase [Proteus mirabilis ATCC 29906]
          Length = 171

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 112/169 (66%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+++    D  + +EGCLSIP+ RA V R+  + VR +D N Q
Sbjct: 61  IDISET--RDQKLVLINPELLDQEGDTGI-EEGCLSIPEQRAFVPRAERVKVRALDYNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKRR 166


>gi|309378546|emb|CBX22818.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 167

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|218710998|ref|YP_002418619.1| peptide deformylase [Vibrio splendidus LGP32]
 gi|218324017|emb|CAV20379.1| Peptide deformylase [Vibrio splendidus LGP32]
          Length = 206

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 37  MSVLQVLTLPDNRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 96

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I     +  + +EGCLS+P  RA V R+A +TV+ +D    
Sbjct: 97  IDISET--RDEPMVLINPEITDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDREGN 153

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 154 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 203


>gi|300115536|ref|YP_003762111.1| peptide deformylase [Nitrosococcus watsonii C-113]
 gi|299541473|gb|ADJ29790.1| peptide deformylase [Nitrosococcus watsonii C-113]
          Length = 167

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAA+Q+ V  ++VV
Sbjct: 1   MARLNILHYPDPRLRRKAQPVAVVDKSIRKLADDMLETMYQAPGIGLAAIQVNVPKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   + +P+V INP+II      +  +EGCLS+P+    V R+A ITV Y+D   Q
Sbjct: 61  IDISE--DKSSPLVLINPEIIAR-QGKAESEEGCLSVPEIFEPVTRAAEITVHYLDREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q +    LLATC+QHELDHL G LFID+ S LKR  I KK  K  +L
Sbjct: 118 KQELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165


>gi|310778475|ref|YP_003966808.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
 gi|309747798|gb|ADO82460.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
          Length = 170

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 4/169 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR+ + P+E +N +I  +ID+M+E M+   G+GLAA QIGV  R+ VI
Sbjct: 1   MIYDIRTYGDPVLRKEALPVEDVNDEIREIIDSMVESMHEAGGVGLAAPQIGVSKRIFVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D++D   RK     INP+ + FS +   ++EGCLS+P     VKR A + ++Y + N + 
Sbjct: 61  DIEDGKIRK----VINPEFLEFSKEIVEHEEGCLSVPGVYKKVKRPARVKIKYTNENGEK 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            I  A+GLL+   QHE DHL+  LF+D LS + + M++KK+  L +  +
Sbjct: 117 VIEEAEGLLSRAFQHEADHLDATLFVDKLSPVAKRMVSKKLQALKKETE 165


>gi|313673898|ref|YP_004052009.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940654|gb|ADR19846.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 167

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR   +P++K + ++  ++++M E MY+  G+GLAA Q+G+  RL +I
Sbjct: 1   MLLEILKYPDPRLRVKCKPVDKFDEELKKIVNDMAETMYNAPGVGLAAPQVGIDKRLFII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     + +  VFINP I+    +    +EGCLS+P   A+V R+  +     D N   
Sbjct: 61  DIS--KEKNDLKVFINPTILKKEGEI-CDEEGCLSVPGEYANVTRAEVVEAVAQDINGNE 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            II ADGL+A  +QHELDHLNG LF+D L   KR+ + K + +
Sbjct: 118 FIIKADGLMARAIQHELDHLNGTLFLDRLPAFKRESVKKHIKR 160


>gi|194439835|ref|ZP_03071900.1| peptide deformylase [Escherichia coli 101-1]
 gi|194421225|gb|EDX37247.1| peptide deformylase [Escherichia coli 101-1]
 gi|323974492|gb|EGB69619.1| peptide deformylase [Escherichia coli TW10509]
          Length = 169

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 116/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|325267954|ref|ZP_08134603.1| peptide deformylase [Kingella denitrificans ATCC 33394]
 gi|324980640|gb|EGC16303.1| peptide deformylase [Kingella denitrificans ATCC 33394]
          Length = 167

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 101/170 (59%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  P+  L  V++P+ +++  I  L+ +M E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILTHPNERLHIVAKPVAQVDDRIRTLVADMAETMYAAKGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +       +  INP I     +   ++EGCLS+P     V R+  +TV Y+D   +
Sbjct: 61  IDLSE--EHNQLLALINPTITKKDGET-TFEEGCLSVPGIYDTVSRAETVTVEYLDTEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q + ADGLLA C+QHELDHL G LF+++LS LK+  I  K+ K  + R+
Sbjct: 118 PQSLDADGLLAICIQHELDHLAGKLFVEYLSPLKQSRIKSKLKK--RQRE 165


>gi|261378988|ref|ZP_05983561.1| peptide deformylase [Neisseria cinerea ATCC 14685]
 gi|269144603|gb|EEZ71021.1| peptide deformylase [Neisseria cinerea ATCC 14685]
          Length = 167

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAESVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++HLS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164


>gi|258545465|ref|ZP_05705699.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
 gi|258519298|gb|EEV88157.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
          Length = 184

 Score =  206 bits (526), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 13/183 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I PD  LR+ + P+ +  + +  + DNM   MY   GIGLAA Q+ +  R+VV
Sbjct: 1   MPLLDILIHPDRRLRKTAEPVSQFTNALKTITDNMFATMYEAHGIGLAATQVNIHQRIVV 60

Query: 61  IDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D+ +                  +V INP+II  S++ + +QEGCLS+P   ADV+R A 
Sbjct: 61  MDVPERREDDETETPDAPIPHTKLVLINPEIIATSEETASWQEGCLSLPGQFADVERPAK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQ 167
           I   Y D         A+GLL  C+QHE+DHLNG+LFIDHLSRLKR+ + KK++K  L +
Sbjct: 121 IRYAYYDLGGSRCEGEAEGLLGVCIQHEIDHLNGVLFIDHLSRLKRERLEKKLAKSLLQK 180

Query: 168 LRD 170
            R+
Sbjct: 181 ERE 183


>gi|296104994|ref|YP_003615140.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059453|gb|ADF64191.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 169

 Score =  206 bits (526), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 112/169 (66%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D    
Sbjct: 61  IDVSE--NRDGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|227115518|ref|ZP_03829174.1| peptide deformylase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 170

 Score =  206 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP++I  S D  + +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSE--ERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 PFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|257057414|ref|YP_003135246.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
 gi|256587286|gb|ACU98419.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
          Length = 183

 Score =  206 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L + +R +   + ++  L+++M E MY+ +G+GLAA QIGV  R+ V
Sbjct: 1   MTIHPICIVGEPVLHKPTREVSSFDDELATLVEDMFETMYAAEGVGLAANQIGVDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NP     +I     D     EGCLS+P       R+++  V   
Sbjct: 61  YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDNDWEGCLSVPGESFPTGRASWAKVTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D       +   G  A CLQHE DHL+G L++D L   +     KKM K  +
Sbjct: 121 DVEGNPVEVEGTGYFARCLQHETDHLDGYLYLDRLIG-RHARAAKKMLKANK 171


>gi|225677067|ref|ZP_03788072.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590889|gb|EEH12111.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 179

 Score =  206 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 106/175 (60%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+    +EGCLSIP+   ++KR  ++TV
Sbjct: 61  VDVQLETIENEPAGYESIGKFCMINPEITELSDEQVTLKEGCLSIPEQSYEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+ +
Sbjct: 121 KYRDLNNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKK 175


>gi|238898789|ref|YP_002924471.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259645182|sp|C4K6Y0|DEF_HAMD5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229466549|gb|ACQ68323.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 171

 Score =  206 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++K++  I  + D+MLE MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSILQILHFPDDRLRKIASPVKKMDDQIRQIADDMLETMYQAEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  H   P++ INP+++  S +  + +EGCLSIP  +A + R+  IT++ ++   +
Sbjct: 61  IDVSEDRH--QPLILINPELLEKSGETGI-EEGCLSIPGEKAFIPRAKEITIQALNREGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHL G LF+D+LS  KR  I KKM KL ++ +
Sbjct: 118 SFRLSADDLLAICIQHEMDHLIGKLFVDYLSPFKRQRIQKKMEKLQKINE 167


>gi|307822764|ref|ZP_07652995.1| peptide deformylase [Methylobacter tundripaludum SV96]
 gi|307736368|gb|EFO07214.1| peptide deformylase [Methylobacter tundripaludum SV96]
          Length = 168

 Score =  206 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+ +  ++ ++  I  L+D+MLE MY + G+GLAA Q+ V  R+VV
Sbjct: 1   MSILSILEFPDERLRKKAAIVKTVDDKIKKLVDDMLETMYESHGVGLAATQVNVHQRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  P+  INP+II   D     +EGCLS+P +   V+R+  I V+ +D   +
Sbjct: 61  IDVSE--EKDAPLCLINPEIIEK-DGVKESEEGCLSVPGFFEKVERAEHIIVKALDREGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A  LLA C+QHELDHL+G LF+D++S LKR  I KK+ K+ ++ 
Sbjct: 118 PFELSARDLLAVCVQHELDHLDGKLFVDYISPLKRQRIKKKLEKIHKME 166


>gi|89074760|ref|ZP_01161218.1| peptide deformylase [Photobacterium sp. SKA34]
 gi|89049524|gb|EAR55085.1| peptide deformylase [Photobacterium sp. SKA34]
          Length = 169

 Score =  206 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 108/167 (64%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV +NPKI     +  + +EGCLS+P  R  V R+A ++V  +D N +
Sbjct: 61  IDVSE--ERNQPMVLVNPKITEEHGEDGI-EEGCLSVPTARGFVPRAAGVSVTALDRNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 118 EYSFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKR 164


>gi|171464332|ref|YP_001798445.1| peptide deformylase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238692833|sp|B1XSN2|DEF_POLNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|171193870|gb|ACB44831.1| peptide deformylase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 171

 Score =  206 bits (526), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ ++++ I  ++ +M + MY   G+GLAA Q+ +  R+VV
Sbjct: 1   MALLTVLCYPDSRLHKVAKPVAQVDARIKKIVADMADTMYEAPGVGLAATQVDIHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +   MVFINP+I+  S +   ++EGCLS+P++  +V+R A I V+ +D + +
Sbjct: 61  IDVSD--EQNELMVFINPEIVWTSSETKSWREGCLSVPEFYDEVERPAEIRVKALDIDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I ADG LA CLQHELDHL G +F+++LS  KR  I++KM K  + 
Sbjct: 119 EFEIEADGSLAVCLQHELDHLQGKVFVEYLSIFKRTRISQKMKKRAKE 166


>gi|300822910|ref|ZP_07103046.1| peptide deformylase [Escherichia coli MS 119-7]
 gi|300524676|gb|EFK45745.1| peptide deformylase [Escherichia coli MS 119-7]
          Length = 169

 Score =  206 bits (525), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 117/169 (69%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKLKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|284040267|ref|YP_003390197.1| peptide deformylase [Spirosoma linguale DSM 74]
 gi|283819560|gb|ADB41398.1| peptide deformylase [Spirosoma linguale DSM 74]
          Length = 190

 Score =  206 bits (525), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 11/179 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+ ++ IE  + D+  L  NM E MY+  GIGLAA QIG   R+ V+
Sbjct: 1   MILPIIAYGDPVLRKRAKDIEPGSLDVKTLSQNMFETMYAASGIGLAAPQIGQSVRMFVV 60

Query: 62  DLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D +     +              VFINP+II  + D   ++EGCLSIP  R +V R   I
Sbjct: 61  DGEPLNEDEPEEDIDQSLVGFKKVFINPEIIEEAGDDWGFEEGCLSIPGIRGEVFRPEII 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +RY D +        DG+ A  +QHE DHL+G LF D+L  L+R +I KK+S + + +
Sbjct: 121 VIRYFDVDWNEHEEEYDGMAARIIQHEYDHLDGKLFTDYLPSLRRTLIKKKLSDISKGK 179


>gi|91790468|ref|YP_551420.1| peptide deformylase [Polaromonas sp. JS666]
 gi|91699693|gb|ABE46522.1| peptide deformylase [Polaromonas sp. JS666]
          Length = 173

 Score =  206 bits (525), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  +++P+  +++ +  L  +M + MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MTQLTILRYPDPRLHTIAKPVGAVDARLRQLASDMFDTMYEAAGIGLAATQVDVHERLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I+  S +  V  EGCLS+P     V+RS  + V+ +D + +
Sbjct: 61  IDVSE--DRDQPLVLINPEILWASPETRVGDEGCLSVPGIYDGVERSVAVKVQALDLDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q+  A+G+LA C+QHE+DHL G +F+++LS LKR+ I  KM K  +  +
Sbjct: 119 LQVHAAEGMLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIKQKKDEE 168


>gi|330447316|ref|ZP_08310966.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491507|dbj|GAA05463.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 169

 Score =  206 bits (525), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R  PMV INP+I     +  + +EGCLS+P  RA V R+A ++V  +D N  
Sbjct: 61  IDTSET--RDQPMVLINPEITEKRGEDGI-EEGCLSVPGARALVPRAAEVSVTALDRNGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 TICFDADELLAICIQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKRHNE 167


>gi|332533677|ref|ZP_08409536.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036841|gb|EGI73302.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 168

 Score =  206 bits (525), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR V++ + +++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTVAKDVVQVDDTVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+II       V +EGCLS+P+  A V R+  +TV  ++ N +
Sbjct: 61  IDVSE--ERNEPLVLINPQIIKKDGST-VSEEGCLSVPNSYAKVDRAETVTVAALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             ++ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +  +
Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAKFAE 167


>gi|187930742|ref|YP_001901229.1| peptide deformylase [Ralstonia pickettii 12J]
 gi|187727632|gb|ACD28797.1| peptide deformylase [Ralstonia pickettii 12J]
          Length = 171

 Score =  206 bits (525), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V+ EGCLS+PD    V R A + VR ++    
Sbjct: 61  IDVSES--RDELRVFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + AD LLA C+QHE+DHL G +F+++LS LK+  I  K+ K  +
Sbjct: 119 TFELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKHQR 165


>gi|295096931|emb|CBK86021.1| peptide deformylase [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 169

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 113/169 (66%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSE--NRDERLVLINPEMLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|226329516|ref|ZP_03805034.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198]
 gi|225202702|gb|EEG85056.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198]
          Length = 174

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 113/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+++  + D  + +EGCLSIP+ RA + R+  + VR +D N Q
Sbjct: 61  IDVSET--RDERLVLINPELLDANGDTGI-EEGCLSIPEQRAFIPRAEHVKVRALDYNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKL 165


>gi|15676038|ref|NP_273168.1| peptide deformylase [Neisseria meningitidis MC58]
 gi|121633988|ref|YP_974233.1| peptide deformylase [Neisseria meningitidis FAM18]
 gi|161870945|ref|YP_001600125.1| peptide deformylase [Neisseria meningitidis 053442]
 gi|218767202|ref|YP_002341714.1| peptide deformylase [Neisseria meningitidis Z2491]
 gi|254805844|ref|YP_003084065.1| peptide deformylase [Neisseria meningitidis alpha14]
 gi|54036954|sp|P63916|DEF_NEIMB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040742|sp|P63915|DEF_NEIMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512959|sp|A1KRE5|DEF_NEIMF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083074|sp|A9M464|DEF_NEIM0 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|7225325|gb|AAF40569.1| peptide deformylase [Neisseria meningitidis MC58]
 gi|120865694|emb|CAM09421.1| polypeptide deformylase [Neisseria meningitidis FAM18]
 gi|121051210|emb|CAM07481.1| polypeptide deformylase [Neisseria meningitidis Z2491]
 gi|161596498|gb|ABX74158.1| polypeptide deformylase [Neisseria meningitidis 053442]
 gi|254669386|emb|CBA08535.1| peptide deformylase [Neisseria meningitidis alpha14]
 gi|254671149|emb|CBA08206.1| polypeptide deformylase [Neisseria meningitidis alpha153]
 gi|254672814|emb|CBA06953.1| polypeptide deformylase [Neisseria meningitidis alpha275]
 gi|261391648|emb|CAX49096.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
           meningitidis 8013]
 gi|308388328|gb|ADO30648.1| polypeptide deformylase [Neisseria meningitidis alpha710]
 gi|319411407|emb|CBY91818.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
           meningitidis WUE 2594]
 gi|325129146|gb|EGC51994.1| peptide deformylase [Neisseria meningitidis N1568]
 gi|325131145|gb|EGC53866.1| peptide deformylase [Neisseria meningitidis OX99.30304]
 gi|325133177|gb|EGC55848.1| peptide deformylase [Neisseria meningitidis M6190]
 gi|325135219|gb|EGC57844.1| peptide deformylase [Neisseria meningitidis M13399]
 gi|325137169|gb|EGC59764.1| peptide deformylase [Neisseria meningitidis M0579]
 gi|325138789|gb|EGC61341.1| peptide deformylase [Neisseria meningitidis ES14902]
 gi|325141255|gb|EGC63754.1| peptide deformylase [Neisseria meningitidis CU385]
 gi|325143271|gb|EGC65609.1| peptide deformylase [Neisseria meningitidis 961-5945]
 gi|325145432|gb|EGC67708.1| peptide deformylase [Neisseria meningitidis M01-240013]
 gi|325197399|gb|ADY92855.1| peptide deformylase [Neisseria meningitidis G2136]
 gi|325199324|gb|ADY94779.1| peptide deformylase [Neisseria meningitidis H44/76]
 gi|325203055|gb|ADY98509.1| peptide deformylase [Neisseria meningitidis M01-240149]
 gi|325203229|gb|ADY98682.1| peptide deformylase [Neisseria meningitidis M01-240355]
 gi|325205203|gb|ADZ00656.1| peptide deformylase [Neisseria meningitidis M04-240196]
 gi|325207147|gb|ADZ02599.1| peptide deformylase [Neisseria meningitidis NZ-05/33]
          Length = 167

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  LI +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|87121016|ref|ZP_01076908.1| peptide deformylase [Marinomonas sp. MED121]
 gi|86163854|gb|EAQ65127.1| peptide deformylase [Marinomonas sp. MED121]
          Length = 169

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 70/164 (42%), Positives = 100/164 (60%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR V++P+   N  +   ID+MLE MY  +G+GLAA Q+    RLVV
Sbjct: 1   MAVLPVLEYPDPRLRTVAKPVTDFNDALQVKIDDMLETMYDQNGLGLAATQVDFHQRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   + +PMVFINP+     D  +  QEGCLS+P +   + R+A + V  +D N  
Sbjct: 61  MDFSE--EKNDPMVFINPRFEVLDDAANEEQEGCLSVPGFYEHIYRAARVKVIALDRNGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                  GLLA C+QHE+DHL+G L +D+LS LKR+ I  K+ K
Sbjct: 119 EFEKKVAGLLAVCVQHEIDHLDGKLMVDYLSPLKRNRIKTKLVK 162


>gi|312797602|ref|YP_004030524.1| peptide deformylase [Burkholderia rhizoxinica HKI 454]
 gi|312169377|emb|CBW76380.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI
           454]
          Length = 169

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E+++  I  L+ +M E MY+  G+GLAA Q+ V  R+VV
Sbjct: 3   MALLNILHYPDKRLHKVAKPVERVDERIRKLVADMAETMYAASGVGLAATQVDVHERVVV 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R    VFINP+I+  SD+  + +EGCLS+P     V+R+  + VR ++ N +
Sbjct: 63  IDVSDT--RDALRVFINPEIVWSSDERDINEEGCLSVPRICDSVERAERVRVRALNENGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I   M K  + R
Sbjct: 121 SFELECEGLLAICIQHEMDHLLGKVFVEYLSPLKQMRIKTTMKKFERAR 169


>gi|254419890|ref|ZP_05033614.1| peptide deformylase [Brevundimonas sp. BAL3]
 gi|196186067|gb|EDX81043.1| peptide deformylase [Brevundimonas sp. BAL3]
          Length = 192

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 82/189 (43%), Positives = 116/189 (61%), Gaps = 20/189 (10%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++    P    IL++VS+P+  ++  +  L+D+MLE MY+  GIGLAAVQ+G L 
Sbjct: 1   MAIRRILTIDIPADLAILKQVSKPVAAVDDAVRALMDDMLETMYAAPGIGLAAVQVGALD 60

Query: 57  RLVVIDLQDHAH----------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           R++V+DL D                   RKNP  F NP+I+  SD+   Y+EGCLSIP+Y
Sbjct: 61  RVIVMDLGDRDGTICETEEEDTPEAAEARKNPRFFANPEILWTSDELYTYEEGCLSIPEY 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              V+R A + +RY++ + Q     A+GL A C+QHE+DHLNG+LFIDHLSRLKRD    
Sbjct: 121 FDKVERPARVRIRYLNRDGQSVEEEAEGLYAVCIQHEMDHLNGVLFIDHLSRLKRDRAVT 180

Query: 161 KMSKLVQLR 169
           K+ K  + R
Sbjct: 181 KVKKAARDR 189


>gi|322434765|ref|YP_004216977.1| peptide deformylase [Acidobacterium sp. MP5ACTX9]
 gi|321162492|gb|ADW68197.1| peptide deformylase [Acidobacterium sp. MP5ACTX9]
          Length = 188

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 1/165 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP+L +    +   +  +  L+D M E MY   GIGLAA QIG+  R+ VID+  
Sbjct: 24  VLKWPDPVLAKKGVEVTAFDDRLKTLVDEMFESMYEAQGIGLAAPQIGISERITVIDVSF 83

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             + K+ +  INP II   +   V +EGCLS+PD R  V R+ ++ V+  D       + 
Sbjct: 84  KKNPKDRLALINPVIIEA-EGKQVEEEGCLSLPDIREKVSRAGWVKVKAQDVTGTWFEVE 142

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            D LLA  LQHE+DHL+G+LFID +SRLKR+++ +K+ K+ +  +
Sbjct: 143 GDELLARALQHEIDHLDGVLFIDRISRLKRELVLRKIKKMQKNGE 187


>gi|260599606|ref|YP_003212177.1| peptide deformylase [Cronobacter turicensis z3032]
 gi|260218783|emb|CBA34131.1| Peptide deformylase [Cronobacter turicensis z3032]
          Length = 177

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 115/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 7   MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 66

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N +
Sbjct: 67  IDVSE--NRDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRNGK 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL +++
Sbjct: 124 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 172


>gi|313667406|ref|YP_004047690.1| polypeptide deformylase [Neisseria lactamica ST-640]
 gi|313004868|emb|CBN86294.1| polypeptide deformylase [Neisseria lactamica 020-06]
          Length = 167

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|157825411|ref|YP_001493131.1| peptide deformylase [Rickettsia akari str. Hartford]
 gi|166198521|sp|A8GMJ8|DEF_RICAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157799369|gb|ABV74623.1| peptide deformylase [Rickettsia akari str. Hartford]
          Length = 175

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   + P     +  +NP++I  S++     EGC+S+P  R +V R   I +RY+
Sbjct: 61  IDIKDHDSVERPKDFYPLFIVNPEMIEKSEELIKSNEGCISVPGQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|300692919|ref|YP_003753914.1| peptide deformylase [Ralstonia solanacearum PSI07]
 gi|299079979|emb|CBJ52656.1| peptide deformylase [Ralstonia solanacearum PSI07]
          Length = 169

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 104/169 (61%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+ +++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAEVDGRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSES--RDELRVFINPEILWASKERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 TFELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167


>gi|315635057|ref|ZP_07890338.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
 gi|315476319|gb|EFU67070.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
          Length = 170

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+P+  L+ V  P+  +N D   +ID+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPEEHLKVVCDPVLNVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N +V INP+I+    +  + +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 61  IDIE--GDKQNQLVLINPEILDAEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 EFTLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLMKVKKQME 167


>gi|119943871|ref|YP_941551.1| peptide deformylase [Psychromonas ingrahamii 37]
 gi|119862475|gb|ABM01952.1| peptide deformylase [Psychromonas ingrahamii 37]
          Length = 167

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+E+I  ++    +NM+E MY  +G+GLAA Q+    RLVV
Sbjct: 1   MALLEVLRFPDKRLRTIAKPVEQITVELKKTAENMIETMYEEEGVGLAATQVNFHRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   MV INP I+  S +  + +EGCLS+P+  A+VKR+ F+T+ Y+D   +
Sbjct: 61  IDVSEQ--RNQAMVIINPVIVEHSGE-EISEEGCLSVPETNAEVKRAEFVTLEYLDIEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q++ ADGLLA CLQHE+DHLNG LFID+LS LK+  I  K+ KL +
Sbjct: 118 QQVLKADGLLAVCLQHEIDHLNGKLFIDYLSPLKQKRIKTKLEKLQR 164


>gi|226942060|ref|YP_002797134.1| Def [Laribacter hongkongensis HLHK9]
 gi|226716987|gb|ACO76125.1| Def [Laribacter hongkongensis HLHK9]
          Length = 167

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V+RP++ ++  +  LID+M E MY+  GIGLAA QI    RLVV
Sbjct: 1   MALLNILHYPDERLHTVARPVDVVDDALRRLIDDMAETMYAAHGIGLAATQIDYHRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +       +V INP I   + +  VY+EGCLS+P     V R+  +TV  +D N Q
Sbjct: 61  IDLSE--EHDGLLVLINPVITRKAGET-VYEEGCLSVPGIYDKVTRAETVTVEALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL+G +F++HLS++K+  I +K+ K  + 
Sbjct: 118 PFSLDAEGLLAICIQHEIDHLDGKVFVEHLSQMKQSRIKQKLKKRERQ 165


>gi|253690150|ref|YP_003019340.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259645184|sp|C6DFR5|DEF_PECCP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|251756728|gb|ACT14804.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 170

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP++I  S D  + +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSE--ERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 TFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|207741949|ref|YP_002258341.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum IPO1609]
 gi|206593335|emb|CAQ60262.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum IPO1609]
          Length = 174

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 6   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 66  IDVSES--RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 124 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 172


>gi|119471681|ref|ZP_01614066.1| N-terminal methionine peptide deformylase [Alteromonadales
           bacterium TW-7]
 gi|119445460|gb|EAW26747.1| N-terminal methionine peptide deformylase [Alteromonadales
           bacterium TW-7]
          Length = 168

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 106/167 (63%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR +++ +  ++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTIAKDVADVDDQVRQIVKDMLETMYDENGIGLAATQVNIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+II       + +EGCLS+P+  A V R+  +TV  ++ N +
Sbjct: 61  IDVSE--ERDEPLVLINPQIIKKDGST-ISEEGCLSVPNSYAKVDRAETVTVAALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +
Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164


>gi|83748633|ref|ZP_00945651.1| Peptide deformylase [Ralstonia solanacearum UW551]
 gi|83724677|gb|EAP71837.1| Peptide deformylase [Ralstonia solanacearum UW551]
          Length = 169

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSES--RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167


>gi|157373176|ref|YP_001471776.1| peptide deformylase [Shewanella sediminis HAW-EB3]
 gi|157315550|gb|ABV34648.1| Peptide deformylase [Shewanella sediminis HAW-EB3]
          Length = 170

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 102/169 (60%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ + N+D+   IDNM + MY   GIGLAA Q+     L++
Sbjct: 1   MSLLKVLRFPDERLRTIAKPVAEFNADLQAQIDNMFDTMYEEKGIGLAATQVDFHQHLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFIN +I    D     +EGCLS+P   A+V R+  +T++  D    
Sbjct: 61  MDLQDDVER--PTVFINMEITAR-DGSCTNEEGCLSVPGIYANVDRAESVTIKAFDREGV 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGL A CLQHELDHLNG LF+D+LS LKR  I +K+ K  +L 
Sbjct: 118 EFTLDADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARLE 166


>gi|160896282|ref|YP_001561864.1| peptide deformylase [Delftia acidovorans SPH-1]
 gi|160361866|gb|ABX33479.1| peptide deformylase [Delftia acidovorans SPH-1]
 gi|162662271|gb|EDQ49167.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 170

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P+ K++  I  L+ +M   MY   G+GLAA Q  V     V
Sbjct: 1   MSILPILCYPDPRLHTVAKPVAKVDDRIRQLVQDMYATMYDAQGVGLAATQ--VNVHERV 58

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + +     R  P   INP+++  S++  + +EGCLS+P     V+RS  I V+ +D N  
Sbjct: 59  VVVDVSEGRDEPFALINPELLWASEETQLGEEGCLSVPGIYDGVERSTAIKVKALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +II A+G  A C+QHE+DHL G +F+++LS LKR+ I  K+ K  +  +
Sbjct: 119 ERIIEAEGFKAICIQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQKQAE 168


>gi|299068355|emb|CBJ39579.1| peptide deformylase [Ralstonia solanacearum CMR15]
          Length = 169

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD   V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDISES--RDELRVFINPEIVWASDARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167


>gi|17544789|ref|NP_518191.1| peptide deformylase [Ralstonia solanacearum GMI1000]
 gi|23396562|sp|Q8Y3B0|DEF1_RALSO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|17427078|emb|CAD13598.1| probable peptide deformylase 1 (pdf 1) (polypeptide deformylase1)
           protein [Ralstonia solanacearum GMI1000]
          Length = 169

 Score =  205 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  S+   V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSES--RDELRVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLER 167


>gi|90581176|ref|ZP_01236975.1| peptide deformylase [Vibrio angustum S14]
 gi|90437697|gb|EAS62889.1| peptide deformylase [Vibrio angustum S14]
          Length = 169

 Score =  205 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV +NP+I     +  + +EGCLS+P  R  V R+A ++V  +D + +
Sbjct: 61  IDVSE--ERNQPMVLVNPEITEERGEDGI-EEGCLSVPTARGFVPRAAGVSVTALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 118 EYSFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKR 164


>gi|207727558|ref|YP_002255952.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum MolK2]
 gi|206590795|emb|CAQ56407.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum MolK2]
          Length = 174

 Score =  205 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 6   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 66  IDVSES--RDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 124 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 172


>gi|253997550|ref|YP_003049614.1| peptide deformylase [Methylotenera mobilis JLW8]
 gi|253984229|gb|ACT49087.1| peptide deformylase [Methylotenera mobilis JLW8]
          Length = 166

 Score =  205 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P++++N+ +  LID+M E MY+  GIGLAA Q+    +L++
Sbjct: 1   MAILDILNYPDPRLHTVAKPVKEVNAAVHRLIDDMAETMYAAPGIGLAATQVDQHVQLLL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   +    VFINPKI+    +  VY+EGCLS+P     V R+  I V  +  + +
Sbjct: 61  VDTSET--KDQLQVFINPKILERDGE-QVYEEGCLSVPGVYESVTRAEKILVEALGKDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLL+ C+QHE+DHL G +F+++LS LKR+ I  KM K  + +
Sbjct: 118 RFTLEAHGLLSVCIQHEMDHLQGKVFVEYLSPLKRNRIKNKMLKQQRGK 166


>gi|170724408|ref|YP_001758434.1| peptide deformylase [Shewanella woodyi ATCC 51908]
 gi|169809755|gb|ACA84339.1| peptide deformylase [Shewanella woodyi ATCC 51908]
          Length = 169

 Score =  205 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ + N+D+   IDNM E MY   GIGLAA Q+   ++L+V
Sbjct: 1   MSLLKVLRFPDEKLRTIAKPVTEFNADLQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R  P VFIN +I+  S  F   +EGCLS+P   A+V+R+  +T++ +D    
Sbjct: 61  MDLQDEVER--PKVFINLEIVASSGHFE-NEEGCLSVPGIFANVERAEHVTIKALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGL   CLQHELDHL G LF+D+LS LKR  I +K+ K  +  
Sbjct: 118 EFTLEADGLFGICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARQE 166


>gi|237728621|ref|ZP_04559102.1| peptide deformylase [Citrobacter sp. 30_2]
 gi|283835704|ref|ZP_06355445.1| hypothetical protein CIT292_10096 [Citrobacter youngae ATCC 29220]
 gi|226909243|gb|EEH95161.1| peptide deformylase [Citrobacter sp. 30_2]
 gi|291068383|gb|EFE06492.1| peptide deformylase [Citrobacter youngae ATCC 29220]
          Length = 169

 Score =  205 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++    +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDEQLVLINPELLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|304388911|ref|ZP_07370958.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
 gi|304337045|gb|EFM03232.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
 gi|316985956|gb|EFV64895.1| peptide deformylase [Neisseria meningitidis H44/76]
          Length = 181

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  LI +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178


>gi|323959563|gb|EGB55216.1| peptide deformylase [Escherichia coli H489]
          Length = 169

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 117/169 (69%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  + +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKNGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|256394328|ref|YP_003115892.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
 gi|256360554|gb|ACU74051.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
          Length = 213

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 3/171 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ I  DP+L R   P+E+ +  +  L+ +M   MY+ +G+GLAA QIGV  R+ V 
Sbjct: 8   TARPITIVGDPVLHRPCAPVEEFDDRLAGLVADMFASMYAAEGVGLAANQIGVPLRVFVY 67

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118
           D QD    ++    +NP +     D        EGCLS+P    ++ R  +  V  +D +
Sbjct: 68  DCQDDDGVEHVGHVVNPVLAEQPPDRRQLDDSAEGCLSVPGPHHELARPDYARVTGVDLH 127

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   +   G  A CLQHE DHL G L+ID LS+ +R  +  +M ++ + +
Sbjct: 128 GEPITVEGTGYFARCLQHEFDHLEGRLYIDRLSKRQRKNVLAEMERMQEEK 178


>gi|121610998|ref|YP_998805.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
 gi|121555638|gb|ABM59787.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
          Length = 170

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKK-PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    P++ +PDP L R++RP+  ++  I  L D+ML  MY   GIGLAA Q+ V  RL+
Sbjct: 1   MAILLPILRYPDPRLHRIARPVLAVDERIRALADDMLATMYQAQGIGLAATQVDVHERLL 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D+ D      P+V INP+II  S +   + EGCLS+P    DV+R   + VR +D   
Sbjct: 61  VVDVSD--EHDQPLVLINPEIIWTSAEKQTHNEGCLSVPGIYDDVERFDAVHVRALDTRG 118

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q Q+I ADGLLA CLQHE+DHL G +F+ +LS LKR+ I  +M K  + 
Sbjct: 119 QPQVIEADGLLAMCLQHEMDHLQGKVFVQYLSPLKRNRIKTRMIKQQRE 167


>gi|326793337|ref|YP_004311157.1| peptide deformylase [Marinomonas mediterranea MMB-1]
 gi|326544101|gb|ADZ89321.1| Peptide deformylase [Marinomonas mediterranea MMB-1]
          Length = 168

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/158 (42%), Positives = 105/158 (66%), Gaps = 2/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR V++ +E++  +I   ID+ML+ MY   GIGLAA Q+ +  R+VV
Sbjct: 1   MAVLPVLEYPDPKLRTVAKEVEQVTPEIQAYIDDMLDTMYDESGIGLAATQVDIHLRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  PMVFINP+ +   D+ + +QEGCLS+P Y   + R+A + V+ +D + +
Sbjct: 61  MDHSE--ERNEPMVFINPEFVVLDDEPNEFQEGCLSVPGYYEHIYRAAKVKVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              +  D L+A C+QHE+DHL+G LF+D++S LKR+ I
Sbjct: 119 PFEMEVDELMAVCVQHEIDHLDGKLFVDYISPLKRNRI 156


>gi|291278698|ref|YP_003495533.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
 gi|290753400|dbj|BAI79777.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
          Length = 172

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +P+PILRR S+ +++I+  ++ LID+M+E MY+  G+GLAA Q+GV  R++VI
Sbjct: 1   MVLKIVKYPNPILRRKSKEVKEIDGRVIKLIDDMVETMYAAPGLGLAAPQVGVNERILVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      +   +  INP I+    +  + +EGCLSIP   A+V+R+A + V+ +D + + 
Sbjct: 61  DPSAGEDKSKLIKIINPVIVEADGE-VIEEEGCLSIPGEYANVRRAAKVLVKGLDVDGKE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             I A+ LLA   QHE+DHLNG+LFID LS  KR+ I K + K +   D
Sbjct: 120 VEIEAEDLLARAFQHEIDHLNGVLFIDRLSPTKRETIQKHIKKRIAAGD 168


>gi|283788078|ref|YP_003367943.1| polypeptide deformylase [Citrobacter rodentium ICC168]
 gi|282951532|emb|CBG91231.1| polypeptide deformylase [Citrobacter rodentium ICC168]
          Length = 169

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++    +  + +EGCLSIP+ RA V R+  + +R +D   +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKEGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|59802191|ref|YP_208903.1| peptide deformylase [Neisseria gonorrhoeae FA 1090]
 gi|239997891|ref|ZP_04717815.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|240015128|ref|ZP_04722041.1| peptide deformylase [Neisseria gonorrhoeae DGI18]
 gi|240017578|ref|ZP_04724118.1| peptide deformylase [Neisseria gonorrhoeae FA6140]
 gi|240081720|ref|ZP_04726263.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|240116732|ref|ZP_04730794.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|240118954|ref|ZP_04733016.1| peptide deformylase [Neisseria gonorrhoeae PID1]
 gi|240124492|ref|ZP_04737448.1| peptide deformylase [Neisseria gonorrhoeae PID332]
 gi|240129167|ref|ZP_04741828.1| peptide deformylase [Neisseria gonorrhoeae SK-93-1035]
 gi|260439507|ref|ZP_05793323.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|268593743|ref|ZP_06127910.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|268597818|ref|ZP_06131985.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|268602403|ref|ZP_06136570.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|268604665|ref|ZP_06138832.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
 gi|268683123|ref|ZP_06149985.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
 gi|268687550|ref|ZP_06154412.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
 gi|75507292|sp|Q5F5P6|DEF_NEIG1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|59719086|gb|AAW90491.1| putative polypeptide deformylase [Neisseria gonorrhoeae FA 1090]
 gi|268547132|gb|EEZ42550.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|268551606|gb|EEZ46625.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|268586534|gb|EEZ51210.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|268588796|gb|EEZ53472.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
 gi|268623407|gb|EEZ55807.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
 gi|268627834|gb|EEZ60234.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
          Length = 167

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDAVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|300718672|ref|YP_003743475.1| peptide deformylase [Erwinia billingiae Eb661]
 gi|299064508|emb|CAX61628.1| Peptide deformylase [Erwinia billingiae Eb661]
          Length = 174

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 113/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++   +  +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D    
Sbjct: 61  IDVSENREER--LVLINPEMLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SYELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165


>gi|84393441|ref|ZP_00992198.1| peptide deformylase [Vibrio splendidus 12B01]
 gi|86147129|ref|ZP_01065445.1| peptide deformylase [Vibrio sp. MED222]
 gi|84375957|gb|EAP92847.1| peptide deformylase [Vibrio splendidus 12B01]
 gi|85835013|gb|EAQ53155.1| peptide deformylase [Vibrio sp. MED222]
          Length = 170

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I     +  + +EGCLS+P  RA V R+A +TV+ +D    
Sbjct: 61  IDISET--RDEPMVLINPEITDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|332702665|ref|ZP_08422753.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552814|gb|EGJ49858.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
          Length = 182

 Score =  204 bits (521), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +++ ++ +PD +L R S  I +I  ++  L  +M E MY+ +GIGLAA Q+G   RLVVI
Sbjct: 1   MRRTILKYPDAVLARKSLEIGEITDELRQLAKDMAETMYTNEGIGLAAPQVGECCRLVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R++  V +NPKI    +   V +EGCLS+  YR+DV RS  +TV   D + + 
Sbjct: 61  DITGPDKREDLRVLVNPKITAA-EGKVVSEEGCLSVSGYRSDVARSEKVTVEATDLDGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             I ADGLLA CLQHELDHL+G+LFID +SRLKR +  KK+ KL + R
Sbjct: 120 LSIEADGLLAVCLQHELDHLDGVLFIDRISRLKRSLYDKKVKKLQRER 167


>gi|311277759|ref|YP_003939990.1| peptide deformylase [Enterobacter cloacae SCF1]
 gi|308746954|gb|ADO46706.1| peptide deformylase [Enterobacter cloacae SCF1]
          Length = 169

 Score =  204 bits (521), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 115/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVQEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R+  +V INP++I    +  + +EGCLS+P+ RA V R+  + VR +D + +
Sbjct: 61  IDVSE--DREQQLVLINPELIEKDGETGI-EEGCLSVPEQRALVPRAETVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +++
Sbjct: 118 PFELNADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMK 166


>gi|328880868|emb|CCA54107.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712]
          Length = 187

 Score =  204 bits (521), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 80/162 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+L     P+     ++  L+++M   MY+ +G+GLAA Q+GV  R+ V D
Sbjct: 13  VRAMTLLGDPVLHAPCAPVTDFGPELARLVEDMFATMYAANGVGLAANQVGVGLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++    D     EGCLS+P   A   R     V  +  +    
Sbjct: 73  CPDDEETRHLGHVVNPRLVAADGDVVRGPEGCLSLPGLEAPTPRYDRAVVEGVRLDGTPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   G  A CLQHE DHL G ++ DH++  +R  + + + K
Sbjct: 133 RVEGTGFFARCLQHETDHLEGGVYADHVTGWRRSRLLRAIRK 174


>gi|220933382|ref|YP_002512281.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767610|sp|B8GU11|DEF_THISH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219994692|gb|ACL71294.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 178

 Score =  204 bits (521), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 112/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR+ + P++K++ +I  L+D+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MAKLEILHFPDPRLRKRAVPVDKVDDEIRRLVDDMFETMYDAPGIGLAATQVNVQRQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++     P+VFINP+I+    +    QEGCLS+P Y   V+R+  + VR +D N +
Sbjct: 61  IDVSENN--DQPLVFINPEILDRVGE-EEMQEGCLSVPGYFETVRRADRVRVRALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ KL + 
Sbjct: 118 PFELETDGLLAVCIQHEMDHLDGKLFVDYLSPLKRNRIQKKLEKLTRQ 165


>gi|156932268|ref|YP_001436184.1| peptide deformylase [Cronobacter sakazakii ATCC BAA-894]
 gi|166198516|sp|A7MPE9|DEF_ENTS8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|156530522|gb|ABU75348.1| hypothetical protein ESA_00039 [Cronobacter sakazakii ATCC BAA-894]
          Length = 171

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 115/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL +++
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 166


>gi|15603424|ref|NP_246498.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|13431442|sp|P57948|DEF_PASMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|12721951|gb|AAK03643.1| Def [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 170

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 112/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++++PD  L+ +++P+ ++N +I  ++DNM E MY  +GIGLAA Q+ +  R++ 
Sbjct: 1   MARLNVLVYPDERLKIIAKPVVEVNDEIREIVDNMFETMYLEEGIGLAATQVNIHQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N  V INP+II    +  + +EGCLS+P +R  V R   +T++ +D + +
Sbjct: 61  IDVEGT--KENQYVLINPEIIDSCGETGI-EEGCLSLPGFRGFVPRKEKVTIKALDRHGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHLNGI+F D+LS LKR  + +K+ KL + 
Sbjct: 118 EYTLSAEGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLLKLQKQ 165


>gi|289644962|ref|ZP_06477003.1| peptide deformylase [Frankia symbiont of Datisca glomerata]
 gi|289505235|gb|EFD26293.1| peptide deformylase [Frankia symbiont of Datisca glomerata]
          Length = 182

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR V+ P+   + ++  L+ +++E M+   G+GLAA Q+GV  R+  
Sbjct: 1   MTVREIRLLGDPVLRTVAEPVTTFDKELRRLVADLVESMHEAGGVGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            +NP +  FS++    +EGCLS+P    ++KR   +     + +  
Sbjct: 61  YHVDGEVG-----HLVNPVLGPFSEELMDGEEGCLSLPGLSFELKRPERVIAVGQNVHGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I   GLL+ C+QHE DHL+G+LFID L    +    K + +   
Sbjct: 116 PVTIEGSGLLSRCVQHETDHLDGVLFIDRLDPETKKAAMKAIREAEW 162


>gi|4699740|pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|4699741|pdb|1ICJ|B Chain B, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|4699742|pdb|1ICJ|C Chain C, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|5821888|pdb|1BS4|A Chain A, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821889|pdb|1BS4|B Chain B, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821890|pdb|1BS4|C Chain C, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821891|pdb|1BS5|A Chain A, Peptide Deformylase As Zn2+ Containing Form
 gi|5821892|pdb|1BS5|B Chain B, Peptide Deformylase As Zn2+ Containing Form
 gi|5821893|pdb|1BS5|C Chain C, Peptide Deformylase As Zn2+ Containing Form
 gi|5821894|pdb|1BS6|A Chain A, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821895|pdb|1BS6|B Chain B, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821896|pdb|1BS6|C Chain C, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821900|pdb|1BS7|A Chain A, Peptide Deformylase As Ni2+ Containing Form
 gi|5821901|pdb|1BS7|B Chain B, Peptide Deformylase As Ni2+ Containing Form
 gi|5821902|pdb|1BS7|C Chain C, Peptide Deformylase As Ni2+ Containing Form
 gi|5821903|pdb|1BS8|A Chain A, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821904|pdb|1BS8|B Chain B, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821905|pdb|1BS8|C Chain C, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821915|pdb|1BSZ|A Chain A, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821916|pdb|1BSZ|B Chain B, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821917|pdb|1BSZ|C Chain C, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|7767088|pdb|1BSJ|A Chain A, Cobalt Deformylase Inhibitor Complex From E.Coli
 gi|7767089|pdb|1BSK|A Chain A, Zinc Deformylase Inhibitor Complex From E.Coli
 gi|16975207|pdb|1G27|A Chain A, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975208|pdb|1G27|B Chain B, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975209|pdb|1G27|C Chain C, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975210|pdb|1G2A|A Chain A, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|16975211|pdb|1G2A|B Chain B, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|16975212|pdb|1G2A|C Chain C, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|22219291|pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|22219292|pdb|1LRU|B Chain B, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|22219293|pdb|1LRU|C Chain C, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|62738424|pdb|1XEM|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
           Zinc- Peptide Deformylase Bound To Formate
 gi|62738425|pdb|1XEN|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
           Iron- Peptide Deformylase Bound To Formate
 gi|62738426|pdb|1XEO|A Chain A, High Resolution Crystals Structure Of Cobalt- Peptide
           Deformylase Bound To Formate
 gi|75766233|pdb|2AI8|A Chain A, E.Coli Polypeptide Deformylase Complexed With Sb-485343
 gi|75766234|pdb|2AI8|B Chain B, E.Coli Polypeptide Deformylase Complexed With Sb-485343
 gi|75766235|pdb|2AI8|C Chain C, E.Coli Polypeptide Deformylase Complexed With Sb-485343
          Length = 168

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 116/167 (69%), Gaps = 3/167 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID
Sbjct: 2   VLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVID 61

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +  
Sbjct: 62  VSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 118

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 119 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165


>gi|220924615|ref|YP_002499917.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
 gi|219949222|gb|ACL59614.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
          Length = 173

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/167 (47%), Positives = 110/167 (65%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  I  ++  L  +MLE MY   G+GLAA+QIG   R+V 
Sbjct: 1   MTIRPLVILPDARLRVTSEPVGTITGEVRKLASDMLETMYDAPGVGLAAIQIGEPTRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       +NP+V ++P+I+  S++   Y+EGCLSIP+Y A+V R   + VR+   + +
Sbjct: 61  VDTSKDKEARNPLVLLDPEIVWASEETRSYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDH+S+LKRD + KK +K  +
Sbjct: 121 VVEQEADGLLATCLQHEIDHLNGVLFIDHISKLKRDRVLKKFAKAAK 167


>gi|50122919|ref|YP_052086.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
 gi|81693081|sp|Q6D002|DEF_ERWCT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49613445|emb|CAG76896.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
          Length = 169

 Score =  204 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP++I  S D  + +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSE--ERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 AFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|306840629|ref|ZP_07473381.1| peptide deformylase [Brucella sp. BO2]
 gi|306289367|gb|EFM60603.1| peptide deformylase [Brucella sp. BO2]
          Length = 164

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   + D+  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L        P  +INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRTTG---PKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRLKR+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLKRERLIKRYEKLQR 164


>gi|297250811|ref|ZP_06934289.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
 gi|296837967|gb|EFH21905.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
          Length = 181

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  +  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDGRVRKLVADMFETMYEARGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178


>gi|332830442|gb|EGK03070.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286]
          Length = 187

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 102/174 (58%), Gaps = 7/174 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++   +LR+ SR I     ++  LI+NM E MY+ DGIGLAA QIG+  RL VI
Sbjct: 1   MILPIYLYGHSVLRKKSREISSDYPNLKELIENMFETMYNADGIGLAAPQIGLDIRLFVI 60

Query: 62  DLQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL+  A   NP+      VFINP II  + +    +EGCLSIP     V R+  I ++Y+
Sbjct: 61  DLEPLAE-DNPIYSGFKKVFINPVIIEETGEVVKMEEGCLSIPGINEGVDRNEKIRIQYL 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N        D   A C+QHE DH+ GILFID +S +++ +I  K++ L++ R
Sbjct: 120 DENFVSHDEVYDAFFARCIQHEYDHIEGILFIDKISGIRKQLIKSKLNNLIKGR 173


>gi|99034823|ref|ZP_01314739.1| hypothetical protein Wendoof_01000437 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 179

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 106/175 (60%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+  + +EGCLSIP+    +KR  ++TV
Sbjct: 61  MDIQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHKIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+ +
Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKK 175


>gi|224585201|ref|YP_002639000.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469729|gb|ACN47559.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 164

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 112/159 (70%), Gaps = 3/159 (1%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +  +R
Sbjct: 5   PDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--NR 62

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D +     + ADGL
Sbjct: 63  DERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEADGL 121

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           LA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 122 LAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 160


>gi|114327357|ref|YP_744513.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
 gi|114315531|gb|ABI61591.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
          Length = 205

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 107/165 (64%), Gaps = 2/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++I P   L+  +RP+   ++ +  +L+  M   MY   GIGLAA QI  L RL V+D+
Sbjct: 38  PILIAPHKTLKTRARPVTAGDASLIRDLVPRMFATMYKAPGIGLAAPQIDSLLRLAVVDV 97

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                +  P+V INP II  S++ +  +EGCLS+P+  ADV R A I +RY D +   + 
Sbjct: 98  SPDDQKA-PLVLINPDIIARSEEMATREEGCLSLPNQYADVTRPARIKLRYEDLDGSRRE 156

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + AD LLATC+QHE+DHL+GILF+DHLS LKR+M+ ++++K  + 
Sbjct: 157 MEADDLLATCIQHEIDHLDGILFVDHLSTLKRNMLMRRLAKEQRQ 201


>gi|58697042|ref|ZP_00372504.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|58698050|ref|ZP_00372974.1| peptide deformylase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225629944|ref|YP_002726735.1| polypeptide deformylase [Wolbachia sp. wRi]
 gi|254767611|sp|C0R5A2|DEF_WOLWR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|58535407|gb|EAL59482.1| peptide deformylase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58536692|gb|EAL59978.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|225591925|gb|ACN94944.1| polypeptide deformylase [Wolbachia sp. wRi]
          Length = 179

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/178 (42%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  VDVQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM   K  K+ +  +
Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAITKAQKIKKQHE 178


>gi|261866825|ref|YP_003254747.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293391665|ref|ZP_06635999.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261412157|gb|ACX81528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290952199|gb|EFE02318.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 170

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/162 (43%), Positives = 108/162 (66%), Gaps = 3/162 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+P+  L+ V  P+ ++N +   +IDNM + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPEEHLKVVCDPVVEVNDNTRKIIDNMFDTMYQEGGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++    ++N +V INP+I+    +  + +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 61  IDIE--GDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+
Sbjct: 118 EFTLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKL 159


>gi|167752475|ref|ZP_02424602.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216]
 gi|167659544|gb|EDS03674.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216]
          Length = 181

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V+F  P+LR   R I     ++  LI++M   +   +G+GLAA QIG   RL ++
Sbjct: 1   MIYPIVVFGAPVLREKCREIGPDYPEVKKLIEDMFLTLEEAEGVGLAAPQIGKSIRLFIV 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D          +      FINP+I   S++  +Y+EGCLS+P     V+RS  I +RY+D
Sbjct: 61  DCTPWGEDHPELADYRRAFINPEIYEVSEETKLYEEGCLSLPGLHESVRRSLAIRMRYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N +       GL A  +QHE DHL G++F D LS L+R++I  K+  L + R
Sbjct: 121 ENFEPHDEEFTGLPAWVIQHEYDHLEGVVFTDRLSPLRRNLIKSKLMSLTKGR 173


>gi|194099884|ref|YP_002003021.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
 gi|291042744|ref|ZP_06568485.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|293398236|ref|ZP_06642441.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
 gi|193935174|gb|ACF30998.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
 gi|291013178|gb|EFE05144.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|291611499|gb|EFF40569.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
 gi|317165346|gb|ADV08887.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 181

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDAVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178


>gi|42520067|ref|NP_965982.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81700107|sp|Q73IJ6|DEF_WOLPM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|42409804|gb|AAS13916.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 179

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  MDIQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+ +
Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKK 175


>gi|227328917|ref|ZP_03832941.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 170

 Score =  204 bits (519), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP++I  S D  + +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSE--ERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 AFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|77359005|ref|YP_338580.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123587108|sp|Q3IDI2|DEF_PSEHT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|76873916|emb|CAI85137.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 167

 Score =  204 bits (519), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++ +  ++  +  +I +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MATLEVLRFPDERLRTIAQEVAHVDDQVRVIIKDMLETMYDENGIGLAATQVNIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+II   D  +V +EGCLS+P+  A V R+  +TV  ++   +
Sbjct: 61  IDVSE--ERNEPLVLINPQIIKK-DGTTVSEEGCLSVPNSYAKVDRAETVTVAALNEQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             ++ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +  +
Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAKFAE 167


>gi|294085060|ref|YP_003551820.1| peptide deformylase protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664635|gb|ADE39736.1| peptide deformylase protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 177

 Score =  204 bits (519), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/166 (46%), Positives = 109/166 (65%), Gaps = 1/166 (0%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++  PDP+LR  +  + ++   I NL+D+M   MY   GIGLAA QI +  RL+V+D
Sbjct: 8   ILDIIKLPDPVLREKAVAVPEVTDGIRNLLDDMAVTMYDAPGIGLAAPQINISERLIVMD 67

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                        INP+II  S+D S+ +EGCLSIPD  A+V R A +TVRY D +   Q
Sbjct: 68  C-GKDETPELYKMINPEIIETSEDKSILEEGCLSIPDQTAEVTRPATVTVRYTDIDGDTQ 126

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           ++ A+GLLA C+QHE+DHLNG+LFIDH+SRLKRDMI +++ K ++ 
Sbjct: 127 MLTAEGLLAACVQHEIDHLNGVLFIDHISRLKRDMIIRRVMKEMRQ 172


>gi|170742368|ref|YP_001771023.1| peptide deformylase [Methylobacterium sp. 4-46]
 gi|168196642|gb|ACA18589.1| peptide deformylase [Methylobacterium sp. 4-46]
          Length = 173

 Score =  204 bits (519), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 80/167 (47%), Positives = 109/167 (65%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  I  ++  L  +MLE MY   G+GLAA+Q+G   R+V 
Sbjct: 1   MTIRPLVILPDARLRVTSSPVGTITGEVRKLAADMLETMYDAPGVGLAAIQVGEPTRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       + P+V I+P+I+  S++   Y+EGCLSIP+Y A+V R   + VR+   + +
Sbjct: 61  IDTSKDKEARTPLVLIDPEIVWSSEETRAYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHELDHLNG+LFIDH+S+LKRD + KK +K  +
Sbjct: 121 TVEQEADGLLATCLQHELDHLNGVLFIDHISKLKRDRVMKKFAKAAK 167


>gi|146313352|ref|YP_001178426.1| peptide deformylase [Enterobacter sp. 638]
 gi|167012063|sp|A4WF95|DEF_ENT38 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145320228|gb|ABP62375.1| peptide deformylase [Enterobacter sp. 638]
          Length = 169

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 114/169 (67%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++   +  +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENREER--LVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL ++R
Sbjct: 118 SFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 166


>gi|254467786|ref|ZP_05081192.1| peptide deformylase [beta proteobacterium KB13]
 gi|207086596|gb|EDZ63879.1| peptide deformylase [beta proteobacterium KB13]
          Length = 166

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 72/167 (43%), Positives = 106/167 (63%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +++  +E  +     L+ +M E MY + GIGLAA Q+ V  R++V
Sbjct: 1   MALLKILKYPDPRLHKIAEIVEVFDESTEKLVQDMAETMYESKGIGLAATQVDVHRRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +K+ +V INPK+I F D    Y EGCLS+P +   VKR   IT+ Y D    
Sbjct: 61  IDISD--DKKDLLVLINPKLIKF-DGQQEYDEGCLSVPGFFETVKRYENITISYQDLKGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + + ADGLL+ C+QHE+DHL G +FI++LS+LK+  I KK+SKL +
Sbjct: 118 IKTLEADGLLSVCIQHEMDHLVGKVFIEYLSQLKQQRIKKKISKLSR 164


>gi|332885374|gb|EGK05623.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836]
          Length = 187

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/173 (39%), Positives = 102/173 (58%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V   I K   ++  LIDNM E MY+ DGIGLAA QIG+  RL VI
Sbjct: 1   MILPIYLYGHPVLRKVGEDITKDYPNLGTLIDNMFETMYNADGIGLAAPQIGLAIRLFVI 60

Query: 62  DLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL+  A  +        VFINP+I+  S +    +EGCLSIP     V+R   I ++Y+D
Sbjct: 61  DLEPLAEDEPKYAGFKKVFINPRIVEESGEPVKLEEGCLSIPGINEMVERKERIRIQYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +   A C+QHE DH+ G+LF+D +S +++ +I  K++ L++ R
Sbjct: 121 ENFVAHDEVYEDFFARCIQHEYDHIEGVLFVDLISGIRKQLIKSKLNNLLKGR 173


>gi|16124527|ref|NP_419091.1| polypeptide deformylase [Caulobacter crescentus CB15]
 gi|221233212|ref|YP_002515648.1| peptide deformylase [Caulobacter crescentus NA1000]
 gi|23396553|sp|Q9ABF5|DEF_CAUCR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767574|sp|B8GYE3|DEF_CAUCN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|13421407|gb|AAK22259.1| polypeptide deformylase [Caulobacter crescentus CB15]
 gi|220962384|gb|ACL93740.1| peptide deformylase [Caulobacter crescentus NA1000]
          Length = 173

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 72/171 (42%), Positives = 111/171 (64%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +      L+++S P+E +  ++  L+D+MLE MY   GIGLAAVQ+G   
Sbjct: 1   MAIRRILTVDNAADLATLKKISTPVEAVTDELRALMDDMLETMYDAPGIGLAAVQVGEPV 60

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R++V+DL      K P  F+NP+I+  S+D   Y+EGCLS+P+Y  +V+R + +T+RYM+
Sbjct: 61  RVIVMDLAREGEDKAPRYFVNPEILASSEDLQGYEEGCLSVPEYYDEVERPSKVTLRYMN 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +  A+GL A C+QHE+DHL G+LFIDHLSRL+RD    K+ K  +
Sbjct: 121 YQGETVVEEAEGLFAVCIQHEMDHLEGVLFIDHLSRLRRDRAMAKVKKARR 171


>gi|262040754|ref|ZP_06013985.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041898|gb|EEW42938.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 169

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 116/169 (68%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R+  +V INP+++    +  + +EGCLSIP+ RA V R+  + +R +D N +
Sbjct: 61  IDVSE--NREEQLVLINPEMLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNDK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|226313317|ref|YP_002773211.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
 gi|226096265|dbj|BAH44707.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
          Length = 158

 Score =  203 bits (518), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 65/155 (41%), Positives = 94/155 (60%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDPILR  +  + K NS++  L+D+M + MY  DG+GLAA Q+G+  R++V
Sbjct: 1   MAIRTIVKHPDPILREKAMVVTKFNSNLHKLLDDMADTMYDADGVGLAAPQVGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D       +  INP+II    +   Y EGCLSIP  + DV+R  +I +R  D N  
Sbjct: 61  MDCGD-----GLIEMINPEIIEHEGEQYDYPEGCLSIPGLQGDVRRHKWIKLRGHDRNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + AD LL+ C QHE+DHLNG+LFID   ++ +
Sbjct: 116 VVELEADDLLSRCAQHEIDHLNGVLFIDVADKVYK 150


>gi|118578953|ref|YP_900203.1| peptide deformylase [Pelobacter propionicus DSM 2379]
 gi|118501663|gb|ABK98145.1| peptide deformylase [Pelobacter propionicus DSM 2379]
          Length = 172

 Score =  203 bits (518), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L++ S  +  I  +I  L+ +M E MY   G+GLAA QIGV  R+++I
Sbjct: 1   MIRTILTYPNPELKKKSAAVTIITDEIRELVSDMTETMYHAPGVGLAAPQIGVHQRVIII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+  H      ++ INP I+    + S  +EGCLS+P Y A+V+R A +TVR +D   + 
Sbjct: 61  DVSAHDEPNELIIAINPVIVHAEGE-SYEEEGCLSVPKYAANVRRHASVTVRGLDLEGRE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           Q  +A+GLLA   QHE+DHL+G LF+DHLS LKRD+  
Sbjct: 120 QTWHAEGLLAIAFQHEIDHLDGRLFVDHLSPLKRDLFQ 157


>gi|157828155|ref|YP_001494397.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238650436|ref|YP_002916288.1| peptide deformylase [Rickettsia peacockii str. Rustic]
 gi|157800636|gb|ABV75889.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238624534|gb|ACR47240.1| peptide deformylase [Rickettsia peacockii str. Rustic]
          Length = 175

 Score =  203 bits (518), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH     P     +  +NP+II  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|332974243|gb|EGK11176.1| peptide deformylase [Kingella kingae ATCC 23330]
          Length = 167

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 101/170 (59%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  P+  L  V++P+ +++  I  L+ +M E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILTHPNERLHIVAQPVVQVDDRIRTLVQDMAETMYAARGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +       +  INP I     +   Y+EGCLS+P     V R+  ITV ++D    
Sbjct: 61  IDLSE--EHNQLLALINPVITKKDGET-TYEEGCLSVPGIYDTVTRAKTITVEFLDTQGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q + ADGLLA C+QHELDHL G LF+++LS LK++ I  K+ K  + R+
Sbjct: 118 KQSLDADGLLAICIQHELDHLAGKLFVEYLSPLKQNRIKTKLKK--RQRE 165


>gi|157830814|pdb|1DFF|A Chain A, Peptide Deformylase
          Length = 164

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 115/166 (69%), Gaps = 3/166 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID
Sbjct: 2   VLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVID 61

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +  
Sbjct: 62  VSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 118

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L
Sbjct: 119 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164


>gi|325972108|ref|YP_004248299.1| peptide deformylase [Spirochaeta sp. Buddy]
 gi|324027346|gb|ADY14105.1| Peptide deformylase [Spirochaeta sp. Buddy]
          Length = 167

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 67/164 (40%), Positives = 95/164 (57%), Gaps = 4/164 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +L    +P+ K +S +  L+D M E M   DG+GLAA Q+GV  RL VI +Q
Sbjct: 3   DIYTLGDEVLTEKCQPVTKFDSALRILVDAMFETMAEADGVGLAAPQVGVNSRLFVIHIQ 62

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              +R     +INP+II  S +    +EGCLSIP    DV+R A +TV+  D   +   +
Sbjct: 63  GSENR----AYINPQIIETSIETDTSEEGCLSIPGVWHDVQRPARVTVQAQDVEGKVFTV 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            A+GLLA  +QHE DHLNG+LFID L+  +R+ + K   K  +L
Sbjct: 119 KAEGLLARAIQHEYDHLNGVLFIDRLNDEEREKMVKAYEKRAKL 162


>gi|283852905|ref|ZP_06370166.1| peptide deformylase [Desulfovibrio sp. FW1012B]
 gi|283571734|gb|EFC19733.1| peptide deformylase [Desulfovibrio sp. FW1012B]
          Length = 175

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P P L + + P+ +I  +I  L   M E MY+  GIGLAA Q+G   RLVVI
Sbjct: 1   MSLEILKYPHPTLAQKAAPVTEITPEIRELAAAMAETMYANQGIGLAAPQVGRSIRLVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL     R+  M  +NP I   + +    +EGCLS+ DYR +V R+A +TV+  D +   
Sbjct: 61  DLSGPDKREGLMTLVNPVITDPAGE-EEDEEGCLSVRDYRTNVVRAATVTVKATDLDGNP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA CLQHE+DHL+G+LFIDH+SRLKR M  K++ +  +  
Sbjct: 120 FCLEADGLLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWARQE 167


>gi|256830603|ref|YP_003159331.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028]
 gi|256579779|gb|ACU90915.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028]
          Length = 170

 Score =  203 bits (518), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 106/169 (62%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +V +P+P+L + + P+ +I  +I  L   MLE+MY+  GIGLAA Q+    RL+ +
Sbjct: 1   MPRTIVTYPNPVLAKKAAPVVEITEEIRALAAEMLEIMYADKGIGLAAPQVAESIRLITV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL     R++P VF+NP +     +    +EGCLS+  YR  VKR+  + +   D + + 
Sbjct: 61  DLSGPDKREDPHVFVNPVLSNLEGEVES-EEGCLSVVGYRTTVKRAERLHLSATDLDGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             + AD L+A CLQHE+DHL+G+LFID +S+LKR +  +K+ K ++ ++
Sbjct: 120 VEMDADDLMAICLQHEVDHLDGVLFIDKISKLKRTLYERKLKKWLKEKN 168


>gi|300741380|ref|ZP_07071401.1| peptide deformylase [Rothia dentocariosa M567]
 gi|300380565|gb|EFJ77127.1| peptide deformylase [Rothia dentocariosa M567]
          Length = 190

 Score =  203 bits (517), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI+ +P+L R + P+   + +   L+ +M E M +  G+GLAA QIGV  R+  
Sbjct: 1   MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++          +NP     K+     D    +EGCLS P Y   +KR+ ++TV   
Sbjct: 61  YQMENEDGVTPRGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D         A G  A C+QHE DHL+G L+++ L++     + K + +
Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNKKWTSRMKKVVKR 169


>gi|190571318|ref|YP_001975676.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018714|ref|ZP_03334522.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|238058217|sp|B3CMB1|DEF_WOLPP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190357590|emb|CAQ55031.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995665|gb|EEB56305.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 179

 Score =  203 bits (517), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 74/175 (42%), Positives = 106/175 (60%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P+VI PD  L   +  +  I   I  L+++M E MY  +G+GLAAVQ+GVL R+ +
Sbjct: 1   MSKLPIVIAPDERLTTRASEVIDITDKIKELVNDMFETMYYAEGLGLAAVQVGVLKRIFI 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   S +  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  MDVQPEKAEDGPAGYESTGKFCMINPEITELSGEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +Y + N + Q + A G LA C+QHELDHLNGIL++ HLS+LK DM  KK  K+ +
Sbjct: 121 KYKNLNNEEQTLKASGWLARCIQHELDHLNGILYVRHLSKLKYDMAMKKAQKVKR 175


>gi|227539328|ref|ZP_03969377.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241010|gb|EEI91025.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 192

 Score =  203 bits (517), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 98/175 (56%), Gaps = 8/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+LR+ ++ I++   +I  LI NM + MY+  G+GLAA QIG+  R+ VI
Sbjct: 1   MKLPIVAYGDPVLRKKTQEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLAIRVFVI 60

Query: 62  DLQDHAHRKN--------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           D    A   +          VFINP I+  + +   + EGCLSIPD   +V R A + + 
Sbjct: 61  DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Y+D N +   I   GL A  +QHE DHL G LF D L  LK+ M+  K+  + + 
Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKG 175


>gi|165932853|ref|YP_001649642.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|165907940|gb|ABY72236.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
          Length = 175

 Score =  203 bits (517), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH     P     +  +NP++I  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEVIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|78484538|ref|YP_390463.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
 gi|123755296|sp|Q31J84|DEF_THICR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78362824|gb|ABB40789.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
          Length = 169

 Score =  203 bits (517), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 72/164 (43%), Positives = 100/164 (60%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +V++PD  LR V +P+ ++  ++  LID M   MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MDKLDIVLYPDEGLREVCKPVPEMTDELDKLIDEMFYTMYDAPGIGLAAPQVAVQQRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +  P+  +NP+II  +     ++EGCLSIP   A V R + I VR MD + +
Sbjct: 61  VDISET--KDEPIALLNPEIIKTAG-KITWEEGCLSIPGIYAKVDRPSDILVRGMDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+ LLA C+QHE+DHLNG LFIDHLS LKR    +K  K
Sbjct: 118 TIEFEANELLAVCIQHEIDHLNGKLFIDHLSGLKRTRAIQKFKK 161


>gi|302381971|ref|YP_003817794.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192599|gb|ADL00171.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264]
          Length = 194

 Score =  203 bits (517), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 80/192 (41%), Positives = 112/192 (58%), Gaps = 22/192 (11%)

Query: 1   MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +     IL++VS+P+  ++  +  L+D+ML+ MY   GIGLAAVQIG L 
Sbjct: 1   MAIRRILTIDNTADLAILKQVSKPVAVVDDAVRALMDDMLDTMYDAPGIGLAAVQIGELQ 60

Query: 57  RLVVIDLQD------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98
           R+VV+DL D                       NP  F+NP++I  SD+   Y+EGCLSIP
Sbjct: 61  RVVVMDLGDGPAPEAAEAAAEDEEGSEETRVPNPRFFVNPEVIWASDETFCYEEGCLSIP 120

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           +Y   V+R A + V Y+D          +GL A C QHELDHLNG+LFIDHLSRL+RD  
Sbjct: 121 EYFDQVERPARVRVAYLDRTGARIEGEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRA 180

Query: 159 TKKMSKLVQLRD 170
             K+ K ++LR+
Sbjct: 181 MSKVKKTMRLRE 192


>gi|315125137|ref|YP_004067140.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
           SM9913]
 gi|315013650|gb|ADT66988.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
           SM9913]
          Length = 168

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 104/167 (62%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR +++ +  ++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTIAKEVTVVDDQVREIVKDMLETMYDENGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+II       V +EGCLS+P   A V R+  +TV  ++   +
Sbjct: 61  IDVSE--ERNEPLVLINPQIIKKDGST-VSEEGCLSVPHSYAKVDRAETVTVAALNEEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I+ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +
Sbjct: 118 EFILDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164


>gi|225024414|ref|ZP_03713606.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC
           23834]
 gi|224942795|gb|EEG24004.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC
           23834]
          Length = 167

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILRYPDPRLNLVAKPVEQVDERIKQLVADMAETMYEAKGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R    V INP II    +  +Y+EGCLS+P     V R+  I    +D   +
Sbjct: 61  MDLSES--RDQLQVLINPVIIERDGET-IYEEGCLSVPGVYDKVTRAESIVAEALDAEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I+ADGL A C+QHE+DHL+G +F+ +LSRLK++ I  KM KL +
Sbjct: 118 PYTIHADGLQAICIQHEIDHLDGKVFVQYLSRLKQERIKTKMKKLDK 164


>gi|294789398|ref|ZP_06754635.1| peptide deformylase [Simonsiella muelleri ATCC 29453]
 gi|294482611|gb|EFG30301.1| peptide deformylase [Simonsiella muelleri ATCC 29453]
          Length = 171

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P+ ++N  I  L+ +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILKYPDPKLHTVAKPVSEVNDRIKKLVADMAETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   R   +  INP IIT  D  + Y+EGCLS+P     V R+  +TV ++D +  
Sbjct: 61  IDLSE--ERNQLITLINP-IITHKDGETTYEEGCLSVPGVYDTVTRAERVTVEFLDADGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLA C+QHELDHL G +F+++LS LK++ I  KM K  +  
Sbjct: 118 AQKLDADGLLAICIQHELDHLQGKVFVEYLSPLKQNRIKTKMKKREREE 166


>gi|188535243|ref|YP_001909040.1| peptide deformylase [Erwinia tasmaniensis Et1/99]
 gi|238692005|sp|B2VK93|DEF_ERWT9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188030285|emb|CAO98174.1| Peptide deformylase [Erwinia tasmaniensis Et1/99]
          Length = 169

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 113/168 (67%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V I+P+++  S +  + +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSE--DRDERLVLIDPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165


>gi|311113462|ref|YP_003984684.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
 gi|310944956|gb|ADP41250.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
          Length = 190

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI+ +P+L R + P+   + +   L+ +M E M +  G+GLAA QIGV  R+  
Sbjct: 1   MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++          +NP     K+     D    +EGCLS P Y   +KR+ ++TV   
Sbjct: 61  YQMENEDGVPARGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D         A G  A C+QHE DHL+G L+++ L++     + K + +
Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNKKWTSRMKKVVKR 169


>gi|34580779|ref|ZP_00142259.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|28262164|gb|EAA25668.1| polypeptide deformylase [Rickettsia sibirica 246]
          Length = 176

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 2   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 61

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH     P     +  +NP+II  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 62  IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 121

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 122 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 171


>gi|171057041|ref|YP_001789390.1| peptide deformylase [Leptothrix cholodnii SP-6]
 gi|170774486|gb|ACB32625.1| peptide deformylase [Leptothrix cholodnii SP-6]
          Length = 171

 Score =  202 bits (516), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +++RP+ +++  I  L+ +M E MY   GIGLAA Q+ V  R++V
Sbjct: 1   MSLLPILRYPDPRLNKIARPVIQVDERIRQLVSDMFETMYEARGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R +P+V INP+I+  S++  V  EGCLS+P     V+R A + V  +D N Q
Sbjct: 61  IDVSE--ERNDPLVLINPRIVAASEEMMVGDEGCLSVPTIYDRVERHAQVQVEALDRNGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                ADGLL+ C+QHE+DHL G +F+++LS LKR+ I  KM K  + RD
Sbjct: 119 RYEFEADGLLSVCVQHEMDHLLGKVFVEYLSPLKRNRIRSKMIK--RGRD 166


>gi|189426265|ref|YP_001953442.1| peptide deformylase [Geobacter lovleyi SZ]
 gi|189422524|gb|ACD96922.1| peptide deformylase [Geobacter lovleyi SZ]
          Length = 166

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P++ FPDP+L++ S P+  I  +I+ L  +M E MY   G+GLAA QIGVL R++VI
Sbjct: 1   MIRPILAFPDPLLKQKSAPVTIITDEIIQLARDMAETMYDAPGVGLAAPQIGVLQRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +  INP +I   +  +  +EGCLS+PD+ A+VKR   + V+ +    Q 
Sbjct: 61  DVAAKNEPPQLITAINPVVI-HGEGETYEEEGCLSVPDFSANVKRHERVVVKGLSLEGQE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +I +ADGLLA   QHE+DHL+GILF+D LS LKRD+  KK  K
Sbjct: 120 RIWHADGLLAVAFQHEIDHLDGILFVDRLSPLKRDLFVKKCKK 162


>gi|148262893|ref|YP_001229599.1| peptide deformylase [Geobacter uraniireducens Rf4]
 gi|146396393|gb|ABQ25026.1| peptide deformylase [Geobacter uraniireducens Rf4]
          Length = 171

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/166 (42%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ FPDP L++ S+P+  IN+ ++ L+ +M E MY   G+GLAA QIGV  R+VVI
Sbjct: 1   MIRKILTFPDPELKKKSQPVVVINNKVIELVRDMAETMYDAPGVGLAAPQIGVHQRIVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP II    + S  +EGCLSIP Y A+V+R   + V+ ++ + + 
Sbjct: 61  DVAGKDDPPQLIVAINPVIIHADGE-SYEEEGCLSIPKYAANVRRHERVVVKALNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               ADGLLA   QHE+DHL+GILFIDH+S LKR++  +K  + ++
Sbjct: 120 ITCKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRRTLE 165


>gi|298370618|ref|ZP_06981933.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281228|gb|EFI22718.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 167

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++ + K++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKSVGKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTE--DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|333029959|ref|ZP_08458020.1| Peptide deformylase [Bacteroides coprosuis DSM 18011]
 gi|332740556|gb|EGJ71038.1| Peptide deformylase [Bacteroides coprosuis DSM 18011]
          Length = 186

 Score =  202 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/172 (40%), Positives = 97/172 (56%), Gaps = 5/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR V++ I     ++  LI NM E M   DGIGLAA QIG+  RLVV+
Sbjct: 1   MILPIYVYGQPVLREVAKDITPEYPNLKELIQNMFETMEHADGIGLAAPQIGLSIRLVVM 60

Query: 62  DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +      +    VFINP I     D     EGCLS+P    DV R   + V Y D
Sbjct: 61  DLDVLSEDFPELKGFRKVFINPYIEEVDGDDITMGEGCLSLPGIGEDVTRPDVVYVTYQD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            N +      +G LA  +QHE DHL+GI+FIDH+S L++ MI  K++K+V+ 
Sbjct: 121 ENFEKHTEKVEGYLARVMQHEFDHLDGIMFIDHISPLRKQMIRSKLNKMVKG 172


>gi|170288957|ref|YP_001739195.1| peptide deformylase [Thermotoga sp. RQ2]
 gi|281412566|ref|YP_003346645.1| peptide deformylase [Thermotoga naphthophila RKU-10]
 gi|238688844|sp|B1LB14|DEF_THESQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|170176460|gb|ACB09512.1| peptide deformylase [Thermotoga sp. RQ2]
 gi|281373669|gb|ADA67231.1| peptide deformylase [Thermotoga naphthophila RKU-10]
          Length = 164

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 96/162 (59%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D+  
Sbjct: 4   IRVFGDPVLRKRAKPVTKFDDNLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVG- 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EGCLS P+   +++RS  I V+Y +   ++    
Sbjct: 63  ----NGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160


>gi|134097125|ref|YP_001102786.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009658|ref|ZP_06567631.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909748|emb|CAL99860.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 191

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R +E  + ++  L+D+M E M +  G+GLAA QIGV  RL V
Sbjct: 1   MAVHPIRIVGDPVLHNPTRLVENFDDELRTLVDDMFETMAAASGVGLAANQIGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NP + T        D     EGCLS+P       R+ +  V   
Sbjct: 61  YDCPDDEGVQHRGVVVNPVLETTEVPESMPDPEEDWEGCLSVPGESFPTGRADWAKVTGS 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D +     +   G  A CLQHE DHL+G L++  L         K + +
Sbjct: 121 DVDGNPVEVEGTGFFARCLQHETDHLDGFLYLSRLVGRHARAAKKTVKR 169


>gi|157964273|ref|YP_001499097.1| peptide deformylase [Rickettsia massiliae MTU5]
 gi|157844049|gb|ABV84550.1| Polypeptide deformylase [Rickettsia massiliae MTU5]
          Length = 176

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 105/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 2   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHKDGAGLAAVQVGVLKRILV 61

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH     P     +  +NP+II  S++     EGC+S+P+ R +V R   I +R +
Sbjct: 62  IDIKDHDSVARPKDFYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRCL 121

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 122 DYHGKSQELQANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 171


>gi|295691230|ref|YP_003594923.1| peptide deformylase [Caulobacter segnis ATCC 21756]
 gi|295433133|gb|ADG12305.1| peptide deformylase [Caulobacter segnis ATCC 21756]
          Length = 173

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +     +L+++S P+E +  ++  L+D+MLE MY   GIGLAAVQ+G   
Sbjct: 1   MAIRRILTVDNAADLAVLKKISTPVEVVTDELRALMDDMLETMYDAPGIGLAAVQVGEPV 60

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R++ +DL        P  F+NP+I+  S++  VY+EGCLS+P+Y  +V+R A +T+RYM+
Sbjct: 61  RVITMDLAREGEEPAPRYFVNPEILASSEEMFVYEEGCLSVPEYFDEVERPAKVTLRYMN 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +  A+GL A C+QHE+DHL G+LFIDHLSRL+RD    K+ K  +
Sbjct: 121 YQGETVVEEAEGLFAVCIQHEMDHLEGVLFIDHLSRLRRDRAIAKVKKARR 171


>gi|257091704|ref|YP_003165345.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257044228|gb|ACV33416.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 167

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR+V+  ++KI+  I  L  +M E MY   GIGLAA Q+ V  R++V
Sbjct: 1   MSLLPILRFPDPRLRKVAARVDKIDDGIRRLARDMAETMYEAPGIGLAATQVDVHARVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R   +  INP+I+   D   V +EGCLS+P     V+R+  + VRY D +  
Sbjct: 61  VDASET--RDQLLTLINPEILQQ-DGLQVCEEGCLSVPGVYDKVERAEHVVVRYQDLDGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + A GLLA CLQHE+DHL G +F++HLS+LK+  I  K++K  ++
Sbjct: 118 EQTVDATGLLAVCLQHEIDHLQGRVFVEHLSQLKQLRIRNKLAKQARI 165


>gi|229586451|ref|YP_002844952.1| peptide deformylase [Rickettsia africae ESF-5]
 gi|228021501|gb|ACP53209.1| Polypeptide deformylase [Rickettsia africae ESF-5]
          Length = 175

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH     P     +  +NP++I  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEMIEQAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|325105696|ref|YP_004275350.1| peptide deformylase [Pedobacter saltans DSM 12145]
 gi|324974544|gb|ADY53528.1| peptide deformylase [Pedobacter saltans DSM 12145]
          Length = 188

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 5/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+L++V+  IEK   ++  LI+NM E M + +G+GLAA QIG+  RL VI
Sbjct: 1   MKLPIVAYGDPVLKKVAVDIEKDYPELPALIENMFETMDNANGVGLAAPQIGLSIRLFVI 60

Query: 62  DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D    A           +FINP I   S     + EGCLSIPD R DV R   IT+ Y D
Sbjct: 61  DATPFADEDASLASFKKIFINPIITDESGKEWKFNEGCLSIPDIREDVSRKEQITISYFD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            N  H     +GL A  +QHE DH+ G LF D +S LK+ M+  K+  +V+ 
Sbjct: 121 ENWIHHEDTFNGLAARVIQHEYDHIQGKLFTDRISPLKKAMLKGKLDAIVKG 172


>gi|323173923|gb|EFZ59551.1| peptide deformylase [Escherichia coli LT-68]
 gi|325498855|gb|EGC96714.1| hypothetical protein ECD227_2952 [Escherichia fergusonii ECD227]
          Length = 164

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 114/160 (71%), Gaps = 3/160 (1%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +  +R
Sbjct: 5   PDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--NR 62

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + ADGL
Sbjct: 63  DERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGL 121

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 122 LAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161


>gi|58584374|ref|YP_197947.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|75508016|sp|Q5GTG9|DEF_WOLTR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|58418690|gb|AAW70705.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 179

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 109/175 (62%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +V+ PD  L   +  +  IN  I  L+++M E MY+ +G+GLAAVQIGVL R+ V
Sbjct: 1   MPKLSIVVAPDERLTTRASEVTGINDKIKELVNDMFETMYNAEGLGLAAVQIGVLKRIFV 60

Query: 61  IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q    +  P+          INP+I   SD+  + +EGCLSIP+   +++R  ++TV
Sbjct: 61  MDIQLEDIKGEPVGYESTGKFCMINPEITELSDEQVILKEGCLSIPEQSHEIRRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K  +
Sbjct: 121 KYKDLNNKEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAEKFKR 175


>gi|15892201|ref|NP_359915.1| peptide deformylase [Rickettsia conorii str. Malish 7]
 gi|20137640|sp|Q92IZ1|DEF1_RICCN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|15619334|gb|AAL02816.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
          Length = 175

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH     P     +  +NP+II  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + + + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 121 DYHGKSRELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|300790374|ref|YP_003770665.1| polypeptide deformylase [Amycolatopsis mediterranei U32]
 gi|299799888|gb|ADJ50263.1| putative polypeptide deformylase [Amycolatopsis mediterranei U32]
          Length = 192

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI  +P+L + +R I + +  +  L+D+M E MY+ +G+GLAA QIG+  R+ V
Sbjct: 1   MTIHPIVIAGEPVLHQPTREITEFDEKLRTLVDDMFETMYAAEGVGLAANQIGLDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NP     +I     D     EGCLS P       R+ +  V   
Sbjct: 61  YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGRAKWAKVTGS 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D +     +   G  A CLQHE DHL+G +++D L   +     KKM K  +
Sbjct: 121 DIDGHPIEVEGTGYFARCLQHETDHLDGYIYLDRLVG-RHARAAKKMLKSNK 171


>gi|290477161|ref|YP_003470076.1| peptide deformylase [Xenorhabdus bovienii SS-2004]
 gi|289176509|emb|CBJ83318.1| peptide deformylase [Xenorhabdus bovienii SS-2004]
          Length = 170

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 113/169 (66%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK+++ I ++ID+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHYPDERLRTIAKPVEKVDAGIQSIIDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++       + +EGCLS+P+ RA V R   + ++ +D + Q
Sbjct: 61  IDVSE--NRDQRLVLINPELMNEVGATGI-EEGCLSVPEQRAFVPRFEQVKIKALDYHGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LKR  I +K+ K+ +LR
Sbjct: 118 QFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKVEKIDRLR 166


>gi|239948084|ref|ZP_04699837.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|241563350|ref|XP_002401667.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|215501859|gb|EEC11353.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|239922360|gb|EER22384.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 175

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+M++ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVKAPDERLKQKSQPVLEFTDQTRKFMDDMIKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   + P     +  +NP+II  S++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIKDHDSVERPKDLYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 121 DYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|291285975|ref|YP_003502791.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883135|gb|ADD66835.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 175

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 101/165 (61%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  FPD +LR  + P++ I+  I  L+DNM+E M++  G+GLAA Q+G+  RL+VI
Sbjct: 1   MILEVKTFPDKVLRIKAEPVDSIDESITELLDNMVETMHARSGVGLAAPQVGISKRLIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D     +    +  INP+II+   +  V +EGCLSIP     V+R+  +TV+ MD N + 
Sbjct: 61  DTSAGENEGMLLRVINPEIISAEGE-QVGEEGCLSIPGEYEPVRRAEKVTVKAMDENGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             + A+G LA   QHE+DHL+G+LFID L   K+D + K + + +
Sbjct: 120 YTMEAEGFLARAFQHEIDHLDGVLFIDRLPSYKKDTLKKTIKRRI 164


>gi|300774181|ref|ZP_07084049.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758992|gb|EFK55820.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 192

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 97/175 (55%), Gaps = 8/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+LR+ +  I++   +I  LI NM + MY+  G+GLAA QIG+  R+ VI
Sbjct: 1   MKLPIVAYGDPVLRKKTIEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLPIRVFVI 60

Query: 62  DLQDHAHRKN--------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           D    A   +          VFINP I+  + +   + EGCLSIPD   +V R A + + 
Sbjct: 61  DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Y+D N +   I   GL A  +QHE DHL G LF D L  LK+ M+  K+  + + 
Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKG 175


>gi|59713150|ref|YP_205926.1| peptide deformylase [Vibrio fischeri ES114]
 gi|197334102|ref|YP_002157326.1| peptide deformylase [Vibrio fischeri MJ11]
 gi|75506885|sp|Q5E1Q8|DEF_VIBF1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690282|sp|B5FCW6|DEF_VIBFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|59481251|gb|AAW87038.1| peptide deformylase [Vibrio fischeri ES114]
 gi|197315592|gb|ACH65039.1| peptide deformylase [Vibrio fischeri MJ11]
          Length = 170

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 3/157 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MALLEVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP I   S D  + +EGCLS+P  +  V RSA ++V  +D +  
Sbjct: 61  IDVSET--RDEPMVLINPVITQKSGDDGI-EEGCLSVPGAKGLVPRSAEVSVSALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
                AD LLA C+QHELDHL+G LF+D+LS LKR  
Sbjct: 118 EFSFDADDLLAICVQHELDHLDGKLFVDYLSPLKRKR 154


>gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex aeolicus VF5]
 gi|6014949|sp|O66847|DEF_AQUAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2983203|gb|AAC06802.1| polypeptide deformylase [Aquifex aeolicus VF5]
          Length = 169

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+P+ IL++ +  ++ I+ ++ NLI +M + MY  +G+GLAA QIGV   ++VI
Sbjct: 1   MVRDIVIYPNEILKKPTEKVDVIDKEVKNLIRDMFDTMYEAEGVGLAANQIGVPLSVMVI 60

Query: 62  DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D           +V INP+I    +    Y+EGCLS P    +V+R   + V  ++ + +
Sbjct: 61  DTSPKEDAPPLKLVLINPEIKE-GEGKIKYKEGCLSFPGLSVEVERFQKVKVNALNEHGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +G  A   QHELDHL GI F+D L   +R M  +K  KL++ R
Sbjct: 120 PVELTLEGFPAIVFQHELDHLKGITFVDRLKGWRRRMALEKYQKLLKSR 168


>gi|317486329|ref|ZP_07945159.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6]
 gi|316922399|gb|EFV43655.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6]
          Length = 172

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V +P+P+L + S PI ++  +I  L + M E MY +DGIG+AA Q+G L RLV+
Sbjct: 1   MSLK-IVTYPNPLLGKPSLPITEVTDEIRKLAEEMTEAMYKSDGIGIAAPQVGQLIRLVI 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ID+     R+  MV +NP      D  +   +EGCLS+PDYR+ V+R+A + V   D + 
Sbjct: 60  IDVTGPEKREGKMVLVNPVWTPLPDAGYVESEEGCLSVPDYRSKVRRTARVHVEATDLDG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 AD +LA C+QHE+DHL+G LFID +SRLKR M   K+ K  + 
Sbjct: 120 NPVSFDADDILAICVQHEIDHLDGKLFIDRISRLKRIMFENKLKKGTRQ 168


>gi|306836177|ref|ZP_07469161.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
 gi|304567898|gb|EFM43479.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
          Length = 184

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  + ++ DP+L   +  I   ++ +  L   MLE M +  G+GLAA Q+G+L R+ V
Sbjct: 1   MAELDIRLYGDPVLSSRAEEITTFDTGLRTLAQTMLETMDAAGGVGLAANQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D           V INP      +D     EGCLSIP   AD  R   + V   D   +
Sbjct: 61  YDCSPI-QAGLRGVLINPVWTPLGEDMQTGPEGCLSIPGISADTPRYNRVFVSGRDVEGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GLLA C+QHE DHL+G+LF+  L    R    + + +
Sbjct: 120 PVGMVASGLLARCIQHETDHLDGVLFLRRLGDADRKAAMRTIRE 163


>gi|124265476|ref|YP_001019480.1| peptide deformylase [Methylibium petroleiphilum PM1]
 gi|124258251|gb|ABM93245.1| peptide deformylase [Methylibium petroleiphilum PM1]
          Length = 170

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P+++++  +  L+D+MLE MY   G+GLAA Q+ V  R++V
Sbjct: 1   MPLLDILRYPDPRLHTVAKPVKEVDERVRQLVDDMLETMYDAQGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R  P V INP+++  SD+  V  EGCLS+P     V R A +TVR +  + Q
Sbjct: 61  IDVSD--DRNEPRVLINPELLQVSDEMVVGDEGCLSVPQIYDKVPRHAKVTVRALGRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                A+ LL+ C+QHE+DHL G +F+++LS LKR+ I  KM K  +
Sbjct: 119 AYQFDAEELLSVCVQHEMDHLMGKVFVEYLSPLKRNRIKSKMLKKTR 165


>gi|67458716|ref|YP_246340.1| peptide deformylase [Rickettsia felis URRWXCal2]
 gi|67004249|gb|AAY61175.1| Polypeptide deformylase [Rickettsia felis URRWXCal2]
          Length = 175

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+M++ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMVKTMYHEDGGGLAAVQVGVLKRIMV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   + P     +  +NP+II  S++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIKDHDPIERPKDFYPLFIVNPEIIEKSEELITANEGCISVPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 121 DYHGKSQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKL 170


>gi|261823200|ref|YP_003261306.1| peptide deformylase [Pectobacterium wasabiae WPP163]
 gi|261607213|gb|ACX89699.1| peptide deformylase [Pectobacterium wasabiae WPP163]
          Length = 170

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++ ++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAQSVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP++I  S +  + +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSE--ERDQRLVLINPELIEKSGETGI-EEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 VFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|15644409|ref|NP_229461.1| peptide deformylase [Thermotoga maritima MSB8]
 gi|3023626|sp|P96113|DEF_THEMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|4982236|gb|AAD36728.1|AE001808_3 polypeptide deformylase [Thermotoga maritima MSB8]
 gi|1772608|emb|CAA71356.1| polypeptide deformylase [Thermotoga maritima]
          Length = 164

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 96/162 (59%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D+  
Sbjct: 4   IRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVG- 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EGCLS P+   +++RS  I V+Y +   ++    
Sbjct: 63  ----NGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160


>gi|126348457|emb|CAJ90180.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC
           23877]
          Length = 240

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 78/165 (47%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL I  DP+L      +     ++  L++++   MY+  G+GLAA QIG   R+ V D
Sbjct: 52  VRPLRILGDPVLHAPCEEVTDFGPELAALVEDLFATMYAAHGVGLAANQIGEPVRVFVYD 111

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 112 CPDDEDERHLGHVVNPRLVETGGVVVRGAEGCLSLPGLEAGTERHDEAVVTGFTVTGEPV 171

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   G  A CLQHE DHL G +++D L+  +R  + ++ ++   
Sbjct: 172 TVRGTGFFARCLQHECDHLEGGIYVDRLTGWRRRKVLRRAARASW 216


>gi|313648791|gb|EFS13231.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
 gi|332749748|gb|EGJ80163.1| peptide deformylase [Shigella flexneri 4343-70]
 gi|332766530|gb|EGJ96737.1| peptide deformylase [Shigella flexneri 2930-71]
 gi|332998300|gb|EGK17901.1| peptide deformylase [Shigella flexneri VA-6]
          Length = 164

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 114/160 (71%), Gaps = 3/160 (1%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ +  +R
Sbjct: 5   PDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE--NR 62

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +   + A+GL
Sbjct: 63  DERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAEGL 121

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 122 LAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161


>gi|304415447|ref|ZP_07396096.1| peptide deformylase [Candidatus Regiella insecticola LSR1]
 gi|304282711|gb|EFL91225.1| peptide deformylase [Candidatus Regiella insecticola LSR1]
          Length = 200

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 112/174 (64%), Gaps = 8/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR++++P+EKI+++I  ++D+M + +Y+ +GIGLAA Q+ +  +++V
Sbjct: 24  MPILKILHFPDVQLRKIAKPVEKIDANIERIVDDMFDTIYAEEGIGLAATQVNIHKQIIV 83

Query: 61  IDLQDHAHRKN-------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           I + D + +         P+V INP+++  S +  + +EGCLSIP  R  VKRS  + +R
Sbjct: 84  IHIPDDSDQNERIEAHYRPLVLINPELLEESGETGI-KEGCLSIPGVREWVKRSERVKIR 142

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +D +     + ADGLLA C+QHE+DHL G LFID+LS LK   I KK+ K  Q
Sbjct: 143 ALDRDGNSFTLEADGLLAICIQHEMDHLKGKLFIDYLSPLKFQRIQKKIRKKAQ 196


>gi|145590257|ref|YP_001156854.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048663|gb|ABP35290.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 171

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ ++++ I  ++ +M + MY   G+GLAA Q+ +  R+VV
Sbjct: 1   MALLTVLCYPDQRLHKVAKPVAQVDARIQKIVADMADTMYDAPGVGLAATQVDIHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +   MVFINP+I+  S +   ++EGCLS+P++  +V+R A I V+ ++   +
Sbjct: 61  IDVSD--DQNELMVFINPEIVWASPEKKSWREGCLSVPEFYDEVERPAEIRVKALNLKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA CLQHELDHL G +F+++LS LK+  I++KM K ++ 
Sbjct: 119 EFELEADGLLAVCLQHELDHLQGKVFVEYLSMLKQVRISQKMKKRLKE 166


>gi|302530616|ref|ZP_07282958.1| polypeptide deformylase [Streptomyces sp. AA4]
 gi|302439511|gb|EFL11327.1| polypeptide deformylase [Streptomyces sp. AA4]
          Length = 188

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L + +R I + +  +  L+++M E MY+ +G+GLAA QIG+  R+ V
Sbjct: 1   MTVHPICIAGEPVLHQPTREITEFDDKLAALVEDMFETMYAAEGVGLAANQIGLDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NP     +I     D     EGCLS P       R+ +  V   
Sbjct: 61  YDCPDDEGVEHKGVVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGRAKWAKVTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D       +   G  A CLQHE DHL+G +++D L         K + K
Sbjct: 121 DVEGNPIEVEGTGYFARCLQHETDHLDGFIYLDRLVGRHARAAKKMLKK 169


>gi|315224454|ref|ZP_07866281.1| peptide deformylase [Capnocytophaga ochracea F0287]
 gi|314945475|gb|EFS97497.1| peptide deformylase [Capnocytophaga ochracea F0287]
          Length = 196

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V   I      +  LI NM + M +  G+GLAA Q+G+  RL V+
Sbjct: 1   MVLPIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVV 60

Query: 62  DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A             +     FIN KI+  + D   + EGCLSIP  R DV R   
Sbjct: 61  DASPFADDDELSEDEQTFLKGFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQ 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D +   Q +   GL A  +QHE DH+ GILF D LS  KR +I  K++ + + +
Sbjct: 121 ITIEYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGK 180


>gi|239932667|ref|ZP_04689620.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291441025|ref|ZP_06580415.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672]
 gi|291343920|gb|EFE70876.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672]
          Length = 181

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 81/168 (48%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+LR   R +     ++  L++++   MY+  G+GLAA QIG   R+ V D
Sbjct: 13  VRPLTLLGDPVLRAPCREVTDFGPELARLVEDLFATMYAARGVGLAANQIGEPLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 73  CPDDEDVRHLGHVVNPRLVETDGVVVRGPEGCLSLPGLEAGTERHDHAVVEGFTVTGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ++  G  A CLQHE DHL G L+ D L+  +   + +++ +    R+
Sbjct: 133 TVHGTGFFARCLQHECDHLEGRLYADRLTGWRHRRLMRQVKRASWNRE 180


>gi|148270260|ref|YP_001244720.1| peptide deformylase [Thermotoga petrophila RKU-1]
 gi|166198525|sp|A5ILS1|DEF_THEP1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|147735804|gb|ABQ47144.1| peptide deformylase [Thermotoga petrophila RKU-1]
          Length = 164

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 96/162 (59%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D+  
Sbjct: 4   IRVFGDPVLRKRAKPVTKFDDNLEKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVG- 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EGCLS P+   +++RS  I VRY +   ++    
Sbjct: 63  ----NGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVRYQNTKGEYVEEV 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160


>gi|213963665|ref|ZP_03391916.1| peptide deformylase [Capnocytophaga sputigena Capno]
 gi|213953660|gb|EEB64991.1| peptide deformylase [Capnocytophaga sputigena Capno]
          Length = 193

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V   I     ++  LI NM + M    G+GLAA Q+G+  RL V+
Sbjct: 1   MVLPIIGYGDPVLRKVGEDITPDYPELKALIANMYDTMRHAYGVGLAAPQVGLAIRLFVV 60

Query: 62  DLQDHAHRKNPMV------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A   +               FIN KI   + D   + EGCLSIP  R DV R   
Sbjct: 61  DASPFAEDDDLTAEEQAFLKTFQKTFINAKITEETGDKWNFNEGCLSIPGVREDVSRHKQ 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y+D + + Q +  DGL A  +QHE DH+ GILF D LS  K+ +I  K++ +++ +
Sbjct: 121 ITIEYLDEDFKPQTLTLDGLAARIVQHEYDHIEGILFTDKLSAFKKQLIKTKLNNIMKGK 180


>gi|116747597|ref|YP_844284.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB]
 gi|158512342|sp|A0LEJ7|DEF_SYNFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116696661|gb|ABK15849.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB]
          Length = 170

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 1/158 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PDPILR+ +  +E I+  ++ LID+M E MY   GIGLAA Q+G    L+V
Sbjct: 1   MAILDICTYPDPILRQKAASVENIDEALIKLIDDMTETMYEAPGIGLAANQVGRSLSLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQ        +V INP+I+    +   ++EGCLS+P+Y + VKR A + VR    + +
Sbjct: 61  VDLQRQDEEHGLIVLINPQIVATQGEI-TWEEGCLSVPEYFSAVKRHAEVVVRGYGRDGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A GLLA  LQHE+DHL G LFID L+ + RD+ 
Sbjct: 120 EMEIQAGGLLAVALQHEIDHLEGRLFIDRLNPITRDIF 157


>gi|89890524|ref|ZP_01202034.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7]
 gi|89517439|gb|EAS20096.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7]
          Length = 196

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+V++ I     ++  +++NM E MY   G+GLAA Q+G+  R+ ++
Sbjct: 1   MIYPIVAYGDPVLRKVAKDITPDYPNLDKVLENMWETMYGASGVGLAAPQVGMPIRIFLV 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                        FIN  I+  + +   + EGCLSIP+ R DV R   
Sbjct: 61  DTSPFGDDPELTPEEQKELGSFKKAFINAHIVEENGEEWAFNEGCLSIPNVREDVFRPEE 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+RY D N +       GL+A  +QHE DH+ GILF D +S LK+ +I  K++ + + +
Sbjct: 121 VTIRYCDENFKEVTETYTGLMARVIQHEYDHIEGILFTDKISSLKKRLIKGKLANISKGK 180


>gi|325000006|ref|ZP_08121118.1| peptide deformylase [Pseudonocardia sp. P1]
          Length = 182

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   ++++  L+ ++ + M++  G GLAA QIGV  R+ V
Sbjct: 1   MSIQPVRLFGDPVLRTRATEVTDFDAELRKLVADLTDTMHAEGGAGLAAPQIGVSRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +    A        INP      ++  V  EGCLSIP    D +R   +  R  D + +
Sbjct: 61  YECDGFAG-----HLINPTWEAVGEEEQVGPEGCLSIPGLGFDCRRKLTVVGRGWDMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q++    LLA C+QHE DHL+G+LF+D L    R    +++ +     +
Sbjct: 116 PQVVEGSELLARCIQHETDHLDGVLFVDRLDAETRKRAMREIREASWFGE 165


>gi|82701528|ref|YP_411094.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
 gi|82409593|gb|ABB73702.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
          Length = 191

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  ++ P+ ++  +I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 25  MALLKILQYPDERLHTIAAPVPEVTDEIRVLVQDMAETMYAAPGVGLAATQVDVHKRVIV 84

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +V INP+I T   + S Y+EGCLS+P     V R+A ITV  ++ + +
Sbjct: 85  IDVSNT--HDQLLVLINPEITTHEGE-SDYEEGCLSVPGIFGKVPRAAQITVEALNKDGE 141

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHE+DHL G +F+++ SR+K+  I  K  K  +
Sbjct: 142 RFTLDADGLLAVCIQHEMDHLLGRVFVEYWSRMKQSRIQAKFRKQRR 188


>gi|325983533|ref|YP_004295935.1| peptide deformylase [Nitrosomonas sp. AL212]
 gi|325533052|gb|ADZ27773.1| peptide deformylase [Nitrosomonas sp. AL212]
          Length = 167

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/164 (40%), Positives = 102/164 (62%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V+ P+ +I   I  LI++M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MAILKILQYPDEKLHTVAAPVSQITDKIRTLINDMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R + +V INP+I T S+  S Y+EGCLS+P     V+R+  + VR ++   +
Sbjct: 61  IDTSEA--RNDLLVLINPEI-TASNGISDYEEGCLSVPGIYGKVQRAESVKVRALNAQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++ ADGLLA C+QHE+DHL G +F+++ SRLK+     K+ K
Sbjct: 118 SFVLDADGLLAVCIQHEMDHLAGKVFVEYWSRLKQVRTLAKLKK 161


>gi|251797740|ref|YP_003012471.1| peptide deformylase [Paenibacillus sp. JDR-2]
 gi|247545366|gb|ACT02385.1| peptide deformylase [Paenibacillus sp. JDR-2]
          Length = 161

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 61/148 (41%), Positives = 85/148 (57%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LR  ++ + K NS++  L+ +M E MY  DG+GLAA QIG+  R++V
Sbjct: 1   MAIRIIVKEPDPVLRETAKEVTKFNSNLQKLLKDMAETMYDADGVGLAAPQIGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  +NP I+    +  V  EGCLSIP+   DVKR   I +   D    
Sbjct: 61  VDIGDETG---LISMVNPVIVENEGE-QVGPEGCLSIPNLNGDVKRYERIVINGQDGEGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              + A G LA   QHE+DHLNGILF D
Sbjct: 117 PFTVEASGFLAVAFQHEIDHLNGILFTD 144


>gi|291514572|emb|CBK63782.1| peptide deformylase [Alistipes shahii WAL 8301]
          Length = 181

 Score =  201 bits (511), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI+ D +LRR   PI     D+  L ++M   +   +G+GLAA QIG   RL ++
Sbjct: 1   MIYPIVIYGDEVLRRKCEPIAPDYPDVKKLAEDMFLTLEEAEGVGLAAPQIGKDIRLFIV 60

Query: 62  DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D    A            F+NP+I  FS++   Y EGCLS P   ADV RS  I +RYMD
Sbjct: 61  DCTPWAEEDPSCADYKRAFVNPEIYEFSEEKKTYNEGCLSFPGIHADVARSLSIRMRYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +         GL A  +QHE DH+ G++F D ++ L+R ++  K+  L + +
Sbjct: 121 TDFVEHDEEFTGLKAWVIQHEYDHIEGVVFTDRIAPLRRQLLKSKLLNLAKGK 173


>gi|296125655|ref|YP_003632907.1| peptide deformylase [Brachyspira murdochii DSM 12563]
 gi|296017471|gb|ADG70708.1| peptide deformylase [Brachyspira murdochii DSM 12563]
          Length = 189

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 105/167 (62%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + LVI+ D  L++VS  IEKI+ +I+ LID+M E MY   G+GLAAVQIG+L RL+VI
Sbjct: 1   MLRELVIYGDERLQQVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGILKRLIVI 60

Query: 62  DLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            + D      P   +  INP+II   ++  + +EGCLS P+ R DV R   I V+Y+D  
Sbjct: 61  SVPDFDDETKPDFKLALINPEIIWHGEEKEILEEGCLSFPEIRDDVARYKEIKVKYLDKE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              QI+ A+G +A  LQHE+DH NGI FID L   ++  + +++  L
Sbjct: 121 GNEQILEAEGYIAKVLQHEIDHTNGISFIDRLESYQKRRLKRELKDL 167


>gi|242277625|ref|YP_002989754.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
 gi|242120519|gb|ACS78215.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
          Length = 170

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 97/166 (58%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  ++ +P+  L+ V   +E++  ++  +IDNM+E MY  DG+GLAA Q+GV  RL+VI
Sbjct: 1   MKLDILAYPEESLKEVCSRVEEVTPELKEIIDNMIETMYEDDGVGLAAPQVGVQKRLIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      R +  V INP+I+  S      +E CLS P ++  +KR   +TV   D     
Sbjct: 61  DPSGPKERTDLQVIINPEIVEKSSQKVDSEEACLSCPGFKCVIKRHETVTVTGTDPEGND 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I AD  LA  LQHE+DHL+G L +D + RLKR M  KK+ K ++
Sbjct: 121 VRIEADDFLAIVLQHEIDHLDGTLIVDRVGRLKRAMYDKKVKKWLK 166


>gi|325955519|ref|YP_004239179.1| peptide deformylase [Weeksella virosa DSM 16922]
 gi|323438137|gb|ADX68601.1| Peptide deformylase [Weeksella virosa DSM 16922]
          Length = 190

 Score =  200 bits (510), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 11/178 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DPILR+ +  IE+    +  LI+NM + MY ++G+GLAA QIG   R+ V+
Sbjct: 1   MVLPIIAYGDPILRKKTALIEQDYPHLTELIENMFDTMYDSNGVGLAAPQIGKSIRMFVV 60

Query: 62  DLQDHAH-----------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D +  A                 +FINPK I    D   + EGCLSIP+   DV R   I
Sbjct: 61  DCRPFAEDEDNDEEKETLENFKKIFINPKKIETFGDDWKFTEGCLSIPNIHEDVTRPDGI 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           T+ Y+D N         GL A  +QHE DHL+G LFID+LS  K+ +I+ K+  + + 
Sbjct: 121 TLTYLDENFVEHTESFTGLPARVIQHEYDHLDGKLFIDYLSSFKKKLISNKLKNISKG 178


>gi|255529965|ref|YP_003090337.1| peptide deformylase [Pedobacter heparinus DSM 2366]
 gi|255342949|gb|ACU02275.1| peptide deformylase [Pedobacter heparinus DSM 2366]
          Length = 186

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++ + DP+L++V  PIE+   D+  LI NM E MY+  G+GLAA Q+G+  RL ++
Sbjct: 1   MKLPIIAYGDPVLKKVCTPIEQTYPDLKQLISNMFETMYNAHGVGLAAPQVGLPIRLFIV 60

Query: 62  DLQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D       KN    VFIN +I+  + +   + EGCLSIPD R DV R   I ++Y D + 
Sbjct: 61  DTGADEGDKNKFKKVFINAEILEETGEPWAFNEGCLSIPDIREDVMRKPNIRIKYYDEHW 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +       G+ A  +QHE DH+ G LF D LS L++ M+  K+  + + 
Sbjct: 121 ELHEEEVSGMPARVIQHEYDHIEGKLFTDTLSLLRKTMLKSKLDAISKG 169


>gi|52426256|ref|YP_089393.1| peptide deformylase [Mannheimia succiniciproducens MBEL55E]
 gi|81691285|sp|Q65QF2|DEF_MANSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|52308308|gb|AAU38808.1| Def protein [Mannheimia succiniciproducens MBEL55E]
          Length = 171

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ ++ P+ + N ++   ID+M E MY  +GIGLAA Q+ V  R++ 
Sbjct: 1   MSVLNVLIYPDERLKTIAEPVTEFNDELQTFIDDMFETMYQEEGIGLAATQVDVHKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     +   +V INP+++   +  +  +EGCLS+P  R  V R   +TV+ ++   +
Sbjct: 61  IDIT--GEKTEQLVLINPELLDG-EGETGIEEGCLSLPGLRGFVPRKEKVTVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              ++ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ KL + 
Sbjct: 118 EFTLHADGLLAICIQHEIDHLNGIVFADYLSPLKRNRMKEKLVKLQKQ 165


>gi|256819049|ref|YP_003140328.1| peptide deformylase [Capnocytophaga ochracea DSM 7271]
 gi|256580632|gb|ACU91767.1| peptide deformylase [Capnocytophaga ochracea DSM 7271]
          Length = 196

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V   I      +  LI NM + M +  G+GLAA Q+G+  RL V+
Sbjct: 1   MVLPIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVV 60

Query: 62  DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A             +     FIN KI+  + D   + EGCLSIP  R DV R   
Sbjct: 61  DASPFADDDELSEEEQTFLKDFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQ 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D +   Q +   GL A  +QHE DH+ GILF D LS  KR +I  K++ + + +
Sbjct: 121 ITIEYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGK 180


>gi|225619787|ref|YP_002721044.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1]
 gi|254767571|sp|C0QZQ2|DEF_BRAHW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225214606|gb|ACN83340.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1]
          Length = 187

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + LVI+ D  L++VS  IEKI+ +I+ LID+M E MY   G+GLAAVQIGVL RLVVI
Sbjct: 1   MLRELVIYGDERLQKVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGVLKRLVVI 60

Query: 62  DLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            + D    + P   +  INP+II  +D+    +EGCLS P+ R DV R   I V+Y+D  
Sbjct: 61  SVPDFDDEEKPDFKLALINPEIIWHNDETESLEEGCLSFPEIRDDVARYTQIKVKYLDRE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              QI+ A+  +A  LQHE+DH NGI FID L   ++  + +++ +L
Sbjct: 121 GNEQILDAENYIAKVLQHEIDHTNGISFIDRLESYQKRRLKRELKEL 167


>gi|167648525|ref|YP_001686188.1| peptide deformylase [Caulobacter sp. K31]
 gi|189083067|sp|B0T1S9|DEF_CAUSK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167350955|gb|ABZ73690.1| peptide deformylase [Caulobacter sp. K31]
          Length = 173

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/171 (39%), Positives = 103/171 (60%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +     +L++VS+ +  ++  +  L+D+MLE MY   GIGLAAVQ+G L 
Sbjct: 1   MAIRRILTVDNAADLAVLKQVSKDVPAVDDALRGLMDDMLETMYDAPGIGLAAVQVGELV 60

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            ++V+DL        P  F+NPKI   S++   Y+EGCLS+P+    V+R A + + Y++
Sbjct: 61  NVIVMDLAREGEEPAPRYFVNPKITWASEELFEYEEGCLSVPEVYDAVERPAKVKISYLN 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +     A+ L A C+QHE+DHL G+LFIDHLSRLKRD    K+ K  +
Sbjct: 121 YQGEAVEEDAEELFAVCIQHEMDHLKGVLFIDHLSRLKRDRAISKVKKARR 171


>gi|227503564|ref|ZP_03933613.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
 gi|227075600|gb|EEI13563.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
          Length = 171

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  + ++ DP+L   +  I   +S +  L  NML+ M +  G+GLAA Q+G+L R+ V
Sbjct: 1   MAELDIRLYGDPVLSSRAEEITTFDSSLRTLAQNMLDTMDAAGGVGLAANQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D           V INP      +D  V  EGCLSIP   AD  R   + V   D   +
Sbjct: 61  YDCSPI-QAGLRGVLINPVWTPLGEDMQVGPEGCLSIPGISADTPRHNRVFVSGRDVEGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GLLA C+QHE DHL+G+LF+  L    R    + + +
Sbjct: 120 PVGMVASGLLARCIQHETDHLDGVLFLRRLGDADRKAAMRTIRE 163


>gi|110637113|ref|YP_677320.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
 gi|123163813|sp|Q11X86|DEF_CYTH3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110279794|gb|ABG57980.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
          Length = 184

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++V++ IEK + D++ +  +M E M +  G+GLAA Q+ +  R+ VI
Sbjct: 1   MIYPIVAYGDPVLKKVAQDIEKGSLDVVKMSADMFETMENAHGVGLAAPQVALNLRMFVI 60

Query: 62  D---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D     D         FINP I     D   Y+EGCLSIP  RADV R A + +RY D +
Sbjct: 61  DTSVFDDEKITPVRKTFINPVIEEEWGDEWPYEEGCLSIPGVRADVYRPANLRIRYFDTD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +  +   DG+ A  +QHE DH+ G+LF+DHLS +K+ ++  K++ + + 
Sbjct: 121 WKEHVEEFDGMTARVIQHEYDHIEGVLFVDHLSSIKKRLLKGKLTNISKG 170


>gi|254476440|ref|ZP_05089826.1| peptide deformylase [Ruegeria sp. R11]
 gi|214030683|gb|EEB71518.1| peptide deformylase [Ruegeria sp. R11]
          Length = 169

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 1/167 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V +PDP+L   + P+  I   +  L  +ML+ MY   G GLAA Q+GVL R+ V
Sbjct: 1   MAVRPIVAWPDPVLSTPASPVIAITD-VAALAQDMLDTMYGAPGRGLAAPQVGVLQRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       + P++ INP+I   SD      EGCLSIP     V+RS ++ + + D    
Sbjct: 60  MDTTWKDGTRAPLICINPEIKDRSDRHVSGPEGCLSIPGVSLTVERSEWVDLEWSDLQGV 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                 DG  A C+QHE DHL+GI+  D +S + R    K  +  V+
Sbjct: 120 RHCRRFDGFDAICIQHEYDHLDGIVTFDRVSAVARAEAEKTYNSYVE 166


>gi|88811384|ref|ZP_01126639.1| polypeptide deformylase [Nitrococcus mobilis Nb-231]
 gi|88791273|gb|EAR22385.1| polypeptide deformylase [Nitrococcus mobilis Nb-231]
          Length = 177

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 97/151 (64%), Gaps = 3/151 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP LR  ++P+EK+  ++  L+D++ E MY   GIGLAA Q+ + +R++V
Sbjct: 1   MAILDILHYPDPQLRIRAQPVEKVTDEVRRLVDDLFETMYDAPGIGLAATQVNIHWRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +  P+ FINP+I+    +    QEGCLS+P Y   V+R+ ++ V   D + +
Sbjct: 61  VDITEA--KNEPLAFINPQILERKGE-EEMQEGCLSVPGYFDTVRRAEWVKVHAQDRSGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  DGLLA C+QHE+DHL G LF+D+LS
Sbjct: 118 PFELETDGLLAVCIQHEIDHLEGKLFVDYLS 148


>gi|73666676|ref|YP_302692.1| peptide deformylase [Ehrlichia canis str. Jake]
 gi|72393817|gb|AAZ68094.1| peptide deformylase [Ehrlichia canis str. Jake]
          Length = 185

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 14/181 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L   S  + +++  +  L+D+M E M+   G+GLAAVQ+G+  R++V
Sbjct: 1   MSVLPIVTVPDKRLSLCSEEVREVDQSVKKLVDDMFEAMHVNKGVGLAAVQVGIHKRVLV 60

Query: 61  IDLQDHAHR--------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           +D+ +                    P   INPKI+  S +    +EGCLS+PDY   V R
Sbjct: 61  VDVPEEFRETDDITSQIEGYELCGGPYCIINPKIVDASQEKVTLREGCLSVPDYFDYVVR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             ++TV+Y+D N    II A G LA CL+HE+DHLNGI+F+ +LS+ KRD    K+ K+ 
Sbjct: 121 PQYVTVQYLDYNGNECIIKAQGWLARCLEHEIDHLNGIVFLKYLSKFKRDFAIGKVKKMR 180

Query: 167 Q 167
           +
Sbjct: 181 K 181


>gi|38233909|ref|NP_939676.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200170|emb|CAE49851.1| Putative peptide deformylase [Corynebacterium diphtheriae]
          Length = 169

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+L   S  +E  +S I NL+++MLE M +  G+GLAA Q+GV  R+ V
Sbjct: 1   MAIRDIRLFGDPVLTTKSSDVEVFDSSIRNLVNDMLETMDAAGGVGLAANQVGVTKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   H         INP      +D  +  EGCLSIPD + + +R   ++V   D +  
Sbjct: 61  YDCS-HIEDGLRGHIINPVWEPIGEDIQIGPEGCLSIPDVQEETERWMTVSVSGRDVDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GL+A C+QHE DHL+G+LF+  L ++ R     ++ K
Sbjct: 120 PISLVASGLMARCIQHETDHLDGVLFLRKLDKVHRKDAMAQIRK 163


>gi|302549859|ref|ZP_07302201.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302467477|gb|EFL30570.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 199

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 80/167 (47%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +     ++  L++++   MY+  G+GLAA QIG   R+ V D
Sbjct: 31  VRPLTLHGDPVLHTPCAEVTDFGPELARLVEDLFATMYAAQGVGLAANQIGEPLRVFVFD 90

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 91  CPDDEDVRHLGHVVNPRLVETDGVVIRGPEGCLSLPGLEAGTERYDHAVVEGFTMTGEPV 150

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            ++  G  A CLQHE DHL G ++ DHLS  +   + +++++    R
Sbjct: 151 TLHGTGFFARCLQHEYDHLEGRIYADHLSGWRHRKLMRQVARASWCR 197


>gi|222099700|ref|YP_002534268.1| Peptide deformylase [Thermotoga neapolitana DSM 4359]
 gi|254767608|sp|B9K7G9|DEF_THENN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|221572090|gb|ACM22902.1| Peptide deformylase [Thermotoga neapolitana DSM 4359]
          Length = 164

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 94/162 (58%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K +  +   I+ M+E MY  DG+GLAA Q+G+  R  V+D+  
Sbjct: 4   VRVFGDPVLRKRAKPVTKFDEALKRTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVG- 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+  S +  + +EGCLS P+   +++RS  + VRY +   +     
Sbjct: 63  ----NGPVAVINPEILEASPETEIAEEGCLSFPEIFVEIERSKRVKVRYQNVRGEFVEEE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +   KR ++ K++  + +
Sbjct: 119 LEGYPARVFQHEFDHLNGVLIIDRIKPAKRLLLRKRLMDIAK 160


>gi|269127211|ref|YP_003300581.1| peptide deformylase [Thermomonospora curvata DSM 43183]
 gi|268312169|gb|ACY98543.1| peptide deformylase [Thermomonospora curvata DSM 43183]
          Length = 181

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+ +F DP+LR  + P++  + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MAVKPIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMIDASGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             ++D          +NP +   S+D    +EGCLSIP       R+     +  +   +
Sbjct: 61  YCVEDRLG-----HLVNPTLD-LSEDQEEDEEGCLSIPGLTFPTPRAKRAVAKGFNMYGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +    LLA C+QHE DHL+GILFID +   +R    K + +     +
Sbjct: 115 PITLEGTDLLARCVQHETDHLDGILFIDRMDPEQRKAAMKLIRQAEWFGE 164


>gi|300722039|ref|YP_003711319.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
 gi|297628536|emb|CBJ89108.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
          Length = 168

 Score =  199 bits (508), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 70/171 (40%), Positives = 100/171 (58%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PD  LR+    +   +  +  L+D+MLE MY+T +GIGLAA Q+G    ++
Sbjct: 1   MAILDILTIPDERLRQKCVDVTDFDK-VQTLVDDMLETMYATDNGIGLAAPQVGRKEAVL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL     R  P V +NPKI+   +   V QEGCLSIP Y ADV+R   + V   D   
Sbjct: 60  VIDLSP--DRDKPTVLVNPKIVEK-ERRVVNQEGCLSIPGYYADVERFEKVKVEAFDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               I ++  L+  +QHE+DHLNG++FID+LS L+R M  KK+ K +  R+
Sbjct: 117 NQTTIESEDFLSIVMQHEIDHLNGVIFIDYLSPLRRKMALKKVQKYISNRN 167


>gi|171909540|ref|ZP_02925010.1| peptide deformylase [Verrucomicrobium spinosum DSM 4136]
          Length = 192

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 69/180 (38%), Positives = 109/180 (60%), Gaps = 16/180 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI+ DP+LR   +PI ++  +I  L  +M+E M++  G+GLAA Q+G+  +L VI
Sbjct: 1   MILPIVIYGDPVLRVKCKPITEVTEEIRKLSQDMIETMHNARGVGLAAPQVGIALQLAVI 60

Query: 62  DLQDHAH---------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           ++                       P++F+NPK+     + ++ +EGCLSIPD R++V+R
Sbjct: 61  EVPPDDESVTYVRLNGEDTPLAEAMPLIFLNPKLD-HGKEKAMGEEGCLSIPDLRSEVRR 119

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           SA + V Y   + + + I ADGLLA  LQHE+DHLNGILFID LS   +  + +K+ +L+
Sbjct: 120 SAGVKVEYQTLDGETRTIEADGLLARALQHEIDHLNGILFIDRLSAAAKLGVRRKLKRLM 179


>gi|149278151|ref|ZP_01884289.1| peptide deformylase [Pedobacter sp. BAL39]
 gi|149230917|gb|EDM36298.1| peptide deformylase [Pedobacter sp. BAL39]
          Length = 184

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 98/168 (58%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+L++V  PIE+   ++  LI NM E MY+  G+GLAA QIG+  RL VI
Sbjct: 1   MKLPIVAYGDPVLKKVCAPIEQDYPELKQLISNMFETMYNAHGVGLAAPQIGLPIRLFVI 60

Query: 62  DLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D   D        V+IN +I+  + +   + EGCLSIPD R DV R   I +RY D N +
Sbjct: 61  DTGGDEDEDGVKRVYINAEILEENGEPWAFNEGCLSIPDIREDVMRKPNIRIRYYDENWE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  G+LA  +QHE DH+ G LF + LS L++ M+  K+  + + 
Sbjct: 121 LHEKEVTGMLARVIQHEYDHIQGKLFTETLSLLRKRMLQSKLDAISKG 168


>gi|329114447|ref|ZP_08243209.1| Peptide deformylase [Acetobacter pomorum DM001]
 gi|326696523|gb|EGE48202.1| Peptide deformylase [Acetobacter pomorum DM001]
          Length = 275

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 113/169 (66%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               ++  P P+LR+ +R ++  + +DI  ++ NM   MY   GIGLAA Q+G+  R ++
Sbjct: 108 APLQILTPPHPVLRQKARLVKPEDVADIRKILPNMFSAMYQAPGIGLAAPQVGLSQRFLL 167

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R +P+V INP++I  ++D +V +EGCLS+P+  A+V R   I VR+ + N  
Sbjct: 168 VDLGEKDAR-DPIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNINGD 226

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K ++ +
Sbjct: 227 VVEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAKELKRK 275


>gi|86142250|ref|ZP_01060760.1| peptide deformylase [Leeuwenhoekiella blandensis MED217]
 gi|85831002|gb|EAQ49459.1| peptide deformylase [Leeuwenhoekiella blandensis MED217]
          Length = 196

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+ +  I +   ++  L+ NM E MY   G+GLAA QIG   RL V+
Sbjct: 1   MILPIVAYGDPVLRKKAVEIPQDYPELKELVANMFETMYGASGVGLAAPQIGKAIRLFVV 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A  ++               FINP+I+  + D   + EGCLSIP    DV R   
Sbjct: 61  DATPFADDEDLSDEEQERLRTFKKAFINPQILEETGDEWAFSEGCLSIPGINEDVFRCPI 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I ++Y D +    +   DGLLA  +QHE DH+ GILF D LS LK+ +I  K++ + + +
Sbjct: 121 IKIKYQDEDFNEHVEEFDGLLARVIQHEYDHIEGILFTDKLSSLKKRIIKSKLAGISKGK 180


>gi|227833011|ref|YP_002834718.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182501|ref|ZP_06041922.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454027|gb|ACP32780.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 169

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 1/167 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + ++ DP+L   +  I +    +  L  +MLE M    G+GLAA QIGV  R+ V
Sbjct: 1   MTVREVRLYGDPVLTTRAEEITEFGPSLERLAQDMLETMEDAGGVGLAANQIGVTKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D     H     V INP+     ++  +  EGCLSIP      +R + + +R  D   +
Sbjct: 61  FDCSHFQHGLRGAV-INPEWEAVGEEMQLGTEGCLSIPGISQPTERFSTVRLRGYDPQGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + A GL+A C+QHE DHL+G+LF+  LS   R    K + +   
Sbjct: 120 PVSMLASGLMARCIQHETDHLDGVLFLQRLSDELRKESMKTIRQAEW 166


>gi|209693699|ref|YP_002261627.1| peptide deformylase [Aliivibrio salmonicida LFI1238]
 gi|238058218|sp|B6EP21|DEF_ALISL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|208007650|emb|CAQ77760.1| peptide deformylase (polypeptide deformylase) [Aliivibrio
           salmonicida LFI1238]
          Length = 169

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 71/157 (45%), Positives = 97/157 (61%), Gaps = 3/157 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++ +  +I   ID+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MAVLEVLTFPDDRLRTVAKPVKTVTPEIQTFIDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP I   S D  + +EGCLS+P  +  V RSA ++V  +D +  
Sbjct: 61  IDVSET--RDEPMVLINPVITQKSGDDGI-EEGCLSVPGAKGMVPRSAEVSVTALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
                AD LLA C+QHELDHL G LF+D+LS LKR  
Sbjct: 118 EFSFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKR 154


>gi|160901540|ref|YP_001567121.1| peptide deformylase [Petrotoga mobilis SJ95]
 gi|160359184|gb|ABX30798.1| peptide deformylase [Petrotoga mobilis SJ95]
          Length = 178

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 95/163 (58%), Gaps = 1/163 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + +  DP+LR+ ++ +E  + ++ +++D M   MY  DG+GLAA Q+G+  R  ++D +
Sbjct: 2   EIRLIGDPVLRKRAKKVENFDDNLKDVVDEMFSTMYLYDGVGLAAPQVGISLRFFIMDSR 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +   +V INP+II F  +   ++EGCLSIPD   DV R   + VRY D +      
Sbjct: 62  EENEKGKKVV-INPEIIEFLGEEVSFEEGCLSIPDIFEDVVRPEGVRVRYQDLSGNVIEE 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G  A   QHE DHL GILF D L  +K+  + K++++L++
Sbjct: 121 ELHGYQARIFQHETDHLEGILFTDKLPIVKKARLKKELNQLIE 163


>gi|304404142|ref|ZP_07385804.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
 gi|304347120|gb|EFM12952.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
          Length = 165

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/148 (38%), Positives = 86/148 (58%), Gaps = 3/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LR V++ + K   ++  L+++M + MY  +G+GLAA QIG+  R++V
Sbjct: 1   MSIRIIVKEPDPVLREVAKEVTKFTPNLHKLLNDMADTMYDAEGVGLAAPQIGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +       +  +NP I+  S+      EGCLSIP+   DV R+  + V   D N  
Sbjct: 61  VDIGE--EESGLIEVVNPVIV-LSEGEQFGPEGCLSIPNLNGDVSRADRVKVAGQDRNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              + A G LA   QHE+DHLNGILF D
Sbjct: 118 PIEVDASGFLARAFQHEIDHLNGILFTD 145


>gi|301064006|ref|ZP_07204471.1| peptide deformylase [delta proteobacterium NaphS2]
 gi|300441917|gb|EFK06217.1| peptide deformylase [delta proteobacterium NaphS2]
          Length = 171

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/152 (43%), Positives = 98/152 (64%), Gaps = 1/152 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +P+P+L++ + P++ I+ ++  +ID MLE MY+  GIGLAA Q+GVL R++V
Sbjct: 1   MSHMKIFTYPEPVLKKNAEPVKNIDEELQEIIDQMLETMYAAPGIGLAANQVGVLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D        NP + INP+I+        + E CLS+PD+ A+V R+A I V+ +D N +
Sbjct: 61  FDGSPREEGANPQILINPEIVAAEGSI-KWDEACLSVPDFTAEVNRNANIQVKGLDRNGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A  LLA CLQHE+DHL+GILFID +SR
Sbjct: 120 PLELEAKDLLAVCLQHEIDHLDGILFIDRISR 151


>gi|116621863|ref|YP_824019.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076]
 gi|116225025|gb|ABJ83734.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076]
          Length = 171

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +  P+V F DP+L R +  + + +  ++   +D+M E MY+  G+GLAA QIGV  ++ V
Sbjct: 1   MVYPIVKFGDPVLEREADTVTEFDTPELHKFLDDMFESMYAAKGVGLAAPQIGVSKKIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +  + +V INPKI+   D     +EGCLSIP +R  V+R+  +T+R  +   +
Sbjct: 61  IDVSNGENADDKLVIINPKILKI-DGKQEGEEGCLSIPGFREQVRRARCVTIRAQNAKGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 + LLA    HE DHL G L+I H+S LKRD++ +K+ KL +  D
Sbjct: 120 EFEKTGEDLLARAFLHETDHLYGRLYITHISALKRDLMKRKIKKLQRAGD 169


>gi|124007536|ref|ZP_01692241.1| peptide deformylase [Microscilla marina ATCC 23134]
 gi|123987019|gb|EAY26775.1| peptide deformylase [Microscilla marina ATCC 23134]
          Length = 183

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++ +  I    +D+  L++NM E MY   G+GLAA QIG   RL VI
Sbjct: 1   MIYPIVAYGDPVLKKKAEEIAP-GTDVSELVENMFETMYEAHGVGLAAPQIGKSLRLFVI 59

Query: 62  DLQDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D +      +   M FINP I+       V++EGCLSIPD R +V R   I ++Y D N 
Sbjct: 60  DPEPMDEALQNMKMTFINPVILEEEGTEWVFEEGCLSIPDIRENVSRQPKIRIKYFDLNW 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +      DG+ A  +QHE DH+ G+LF D+LS  K+ ++  +++K+ + 
Sbjct: 120 KEHEAEYDGMAARVIQHEYDHIEGVLFTDYLSGFKKRLLKSRLTKISKG 168


>gi|322384330|ref|ZP_08058028.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150832|gb|EFX44269.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 160

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/160 (40%), Positives = 100/160 (62%), Gaps = 4/160 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+ PDP+LR  ++P+ K NS +  L+D+M + MY  +G+GLAA Q+G+L R +V
Sbjct: 1   MAIRIIVMDPDPVLREKAKPVTKFNSSLHKLLDDMADTMYENEGVGLAAPQVGILKRAIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  +NP+I+  S +  +  EGCLSIPD + DV+R   +TV+  D N  
Sbjct: 61  MDVGD---EHGLIELVNPEIVATSGE-QIGPEGCLSIPDLQGDVRRPMNVTVKGQDRNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             I+    LLA C+ HE+DHLNGILF D   +L R+ + +
Sbjct: 117 EVIVEGTELLARCIMHEVDHLNGILFTDLALKLYRNELEE 156


>gi|99082419|ref|YP_614573.1| peptide deformylase [Ruegeria sp. TM1040]
 gi|99038699|gb|ABF65311.1| Peptide deformylase [Ruegeria sp. TM1040]
          Length = 169

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 1/162 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +PDP L     P+     D+  LID++LE MY+  G GLAA Q+GVL R+ V
Sbjct: 1   MSLLPIVQWPDPRLSTACAPVGAA-EDLGTLIDDVLETMYAAPGRGLAAPQVGVLKRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      +NP+V I P+++  SDD ++ +E CLSIP     + R   I +R+ D +  
Sbjct: 60  MDVDWKEGPRNPVVMIYPEVLWRSDDTTLAKEACLSIPGLSTRITRPTKIRIRWQDADRA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            Q    DG  A C+QHE DHL+G +  DH S  +R ++  + 
Sbjct: 120 AQEQTFDGFAARCIQHEYDHLDGRVTFDHFSSEERRLLEAQY 161


>gi|329849466|ref|ZP_08264312.1| peptide deformylase [Asticcacaulis biprosthecum C19]
 gi|328841377|gb|EGF90947.1| peptide deformylase [Asticcacaulis biprosthecum C19]
          Length = 177

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 114/175 (65%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P P+L++VS+P++K++ D+  L+D+MLE MY   GIGLAAVQIG   R++V
Sbjct: 1   MAIREILTVPHPVLKQVSKPVDKVDDDLRRLMDDMLETMYDAPGIGLAAVQIGEPIRVIV 60

Query: 61  IDL--------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +DL         D    K P  F+NP+II  S++ + Y+EGCLS+P+   +V R + + +
Sbjct: 61  MDLQEKPEGAEPDAEGVKKPRYFVNPEIIWRSEEVAPYEEGCLSVPEIYDEVLRPSKVKL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +Y+D N       ADGL A C+QHE+DHL G LFIDHLS+LKRD    K+ KL +
Sbjct: 121 KYLDYNGNAVEEDADGLFAVCIQHEMDHLEGTLFIDHLSKLKRDRAITKVKKLTR 175


>gi|30249917|ref|NP_841987.1| formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
 gi|39931083|sp|Q82TC8|DEF2_NITEU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|30180954|emb|CAD85881.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
          Length = 185

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +++  +  I  +I  L+ NM E MY+  GIGLAA Q+ V  R++V
Sbjct: 18  MAILNILRYPDERLHKIATEVPSITREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIV 77

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R   +V INP+II  S +    QEGCLS+P     V R+  +TVR    + +
Sbjct: 78  IDVSET--RDELLVLINPEIIASSGNAET-QEGCLSVPGIFDKVTRAEEVTVRATGIDGK 134

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLLA C+QHE+DHL G +F+++LS  K+  I  K+ K  + +
Sbjct: 135 SFEMDASGLLAVCIQHEMDHLMGKVFVEYLSPFKQSRILSKLKKQARRQ 183


>gi|325298805|ref|YP_004258722.1| Peptide deformylase [Bacteroides salanitronis DSM 18170]
 gi|324318358|gb|ADY36249.1| Peptide deformylase [Bacteroides salanitronis DSM 18170]
          Length = 184

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA Q+G+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVV 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +L         ++     +INP I+    +     EGCLS+P     VKR   I V Y+D
Sbjct: 61  NLDVLAEDFPEYKDFRRAYINPHILETGGELVSMDEGCLSLPGIHESVKRPDKIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +      + +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 EDMNPHDEWVEGYLARVMQHEFDHLEGTMFIDHLSALRKQMIKGKLNAMLKGK 173


>gi|288918232|ref|ZP_06412587.1| peptide deformylase [Frankia sp. EUN1f]
 gi|288350402|gb|EFC84624.1| peptide deformylase [Frankia sp. EUN1f]
          Length = 183

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR V+ P+   + ++  L+D++ E M    G+GLAA Q+GV  R+  
Sbjct: 1   MSVRDIRLLGDPVLRTVADPVATFDRELRRLVDDLAETMNEAGGVGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             L D     +    +NP +  FS++    +EGCLS+P    D++R   +     + +  
Sbjct: 61  Y-LDDSDEVGH---LVNPVLGPFSEEMMDGEEGCLSLPGLSFDLRRPERVLAVGQNVHGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I   G+L+ CLQHE DHL+GILFID L +  +    K + +     +
Sbjct: 117 PVTIEGSGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIREAEWANE 166


>gi|213965139|ref|ZP_03393337.1| peptide deformylase [Corynebacterium amycolatum SK46]
 gi|213952253|gb|EEB63637.1| peptide deformylase [Corynebacterium amycolatum SK46]
          Length = 193

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++P+ +  S++  LI++M E M    G+GLAA Q+GV  RL V
Sbjct: 1   MTIRPIVIAGDPVLHTPTQPVTEDVSELRELIEDMYETMDRAHGVGLAANQVGVGKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            +  D     +    INP + T        +D     EGCLS+P       R+    V  
Sbjct: 61  YNCPDDDDVWHRGCVINPVLTTSEIPKTMPNDDGSDDEGCLSVPGLSFPTNRAEKAVVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D N +   I A G  A C+QHE+ HL+G L+ D L+   + M  K++ +
Sbjct: 121 LDENGEEVRIEATGFFARCMQHEVGHLDGFLYTDCLTGRWKRMAKKEIKR 170


>gi|225181326|ref|ZP_03734770.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
 gi|225167907|gb|EEG76714.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
          Length = 154

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR  ++ + +I   +  L+++M+E MY  +GIGLAA Q+G+  R++V
Sbjct: 1   MAIRIIRTTGDPVLREKAKEVPEITPQVKKLLEDMVETMYDAEGIGLAAPQVGISKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD       +  INP+II+  +      EGCLS P    +V+R   +TVR  D +  
Sbjct: 61  IDVQDETGV---LKLINPEIIS-GEGKETSVEGCLSFPGVAGEVERDESVTVRAQDPDGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              I A GLLA   QHE+DHL+GILF+D ++RL    
Sbjct: 117 TVEICASGLLARAFQHEIDHLDGILFVDKVTRLLEQK 153


>gi|34558486|ref|NP_908301.1| peptide deformylase [Wolinella succinogenes DSM 1740]
 gi|39930815|sp|Q7M7M2|DEF_WOLSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34481780|emb|CAE11201.1| POLYPEPTIDE DEFORMYLASE PDF FORMYLMETHIONINEDEFORMYLASE [Wolinella
           succinogenes]
          Length = 170

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 99/166 (59%), Gaps = 4/166 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P++ +P P+L++ S P+   + ++   +D M   M + +G+GLAAVQ+G   R +++++ 
Sbjct: 3   PIITYPHPLLKKRSEPVTLFDEELRQFLDEMYITMLAKNGVGLAAVQVGNPIRALIVNIP 62

Query: 65  DHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      R+N +  INP+ ++   +   + EGCLS+P++  DV R   + + Y D   + 
Sbjct: 63  DEEGNQERENLLEIINPEFLSKEGEIQ-FNEGCLSVPEFYEDVTRFDRVRLTYQDRYGER 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I A+G LA  LQHE+DHLNGILFID LS +KR    K++ K  +
Sbjct: 122 HEIEAEGYLAVALQHEIDHLNGILFIDKLSLIKRKKFEKELKKRQR 167


>gi|163782173|ref|ZP_02177172.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882705|gb|EDP76210.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 171

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 97/170 (57%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +V +P  +L++ +  +  I+ ++ +LI +M + MY+ +G+GLAA QIGV   ++VI
Sbjct: 1   MVREIVTYPAEVLKKPTLEVSDIDREVKSLIKDMFDTMYNAEGVGLAANQIGVPLSVMVI 60

Query: 62  DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D        +  +V INP++I  S+    Y+EGCLS P    +V+R+  + VR ++ + +
Sbjct: 61  DTTPKEDVPDLKLVLINPEVI-ASEGKQKYKEGCLSFPGLSVEVERAKRVKVRALNEHGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +  +   A   QHELDHL GI FID L   +R +  +K  KL +  +
Sbjct: 120 PVEVVLEDFPAIVFQHELDHLKGITFIDRLKGWRRRLALEKYRKLQKEAE 169


>gi|29833668|ref|NP_828302.1| polypeptide deformylase [Streptomyces avermitilis MA-4680]
 gi|39931074|sp|Q826Q0|DEF2_STRAW RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|29610792|dbj|BAC74837.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
          Length = 186

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 82/167 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +     ++  L+++M   MY+ +G+GLAA QIGV  R+ V D
Sbjct: 13  VRPLALLGDPVLHAPCEEVTDHGPELARLVEDMFATMYAANGVGLAANQIGVPLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP++I          EGCLS+P   A  +R     V     + +  
Sbjct: 73  CPDDEDVRHVGHVVNPRLIEADGVVLRGPEGCLSLPGLEAGTERYDRAVVEGFTTDGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   G  A CLQHE DHL+G +++D +S  +   + ++ ++    R
Sbjct: 133 RVLGTGWFARCLQHECDHLDGGVYVDRVSGWRHRRVMRQAARAPWNR 179


>gi|225021362|ref|ZP_03710554.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945744|gb|EEG26953.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 169

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + IF DP+L   +  I   +  + +L+++M + M +  G+GLAA QIGVL R+ V
Sbjct: 1   MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMFDTMDAAGGVGLAANQIGVLRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             INP+     ++  +  EGCLSIP+  AD +R   + V   D +  
Sbjct: 61  FDCT-TEEDGMRGHIINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I A GL+A C+QHE DHL+G+LF+  L+  +R      + +
Sbjct: 120 PLTITASGLMARCIQHETDHLDGVLFLRRLTPERRKEAMAYIRQ 163


>gi|19552813|ref|NP_600815.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|62390483|ref|YP_225885.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|145295722|ref|YP_001138543.1| peptide deformylase [Corynebacterium glutamicum R]
 gi|25452910|sp|Q8NQ46|DEF1_CORGL RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|21324370|dbj|BAB98994.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325820|emb|CAF21609.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032]
 gi|140845642|dbj|BAF54641.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 169

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 1/167 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+L   +  +   +  +  LID+M + M    G+GLAA Q+GVL R+ V
Sbjct: 1   MAVREVRLFGDPVLVSRADEVVDFDESLSTLIDDMFDTMEDAGGVGLAANQVGVLRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             INP     ++D    +EGCLSIPD  A+  R   + +   D +  
Sbjct: 61  FDTSHQEGGLR-GHVINPVWEPLTEDTQTGKEGCLSIPDVSAETTRYETVRLSGQDRDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                A+GLLA C+QHE DHL+G+LF+  L   +R      +     
Sbjct: 120 PVGFVANGLLARCIQHETDHLDGVLFLKRLDPAERKAAMGVIRASAW 166


>gi|289548788|ref|YP_003473776.1| peptide deformylase [Thermocrinis albus DSM 14484]
 gi|289182405|gb|ADC89649.1| peptide deformylase [Thermocrinis albus DSM 14484]
          Length = 174

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 99/168 (58%), Gaps = 2/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P P+L++ +  ++ I+S+I+ L+ +M + MY+ +G+GLAA QIG   R++VI
Sbjct: 1   MVRSVLKYPHPLLKQPTLKVDVIDSEILKLVQDMWDTMYAEEGVGLAANQIGEPLRIMVI 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D           +V INP++I   +    Y+EGCLS P    +V R + +  R +D + +
Sbjct: 61  DTTPKRESPPVKLVLINPQLIEA-EGHITYREGCLSFPGLSVEVTRYSKVRFRALDLSGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +    +G  A   QHELDHLNGI FID LS L+R +  +K  KL + 
Sbjct: 120 EKEYQLEGFPAIVFQHELDHLNGITFIDRLSGLRRRLALEKYGKLQRQ 167


>gi|255037799|ref|YP_003088420.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
 gi|254950555|gb|ACT95255.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
          Length = 194

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 13/180 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DPILR+ +R IEK   D+  L ++M E M+  +G+GLAA QIG+  R+ V+
Sbjct: 1   MIYPIVAYGDPILRKPTRFIEKDEVDLKKLSEDMFETMHGANGVGLAAPQIGLNIRIFVV 60

Query: 62  DLQDHAHRKN-------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           D    A R                  FINP+I+  + +   ++EGCLSIP  R DV R  
Sbjct: 61  DGTPFAERDEDDDDEPDLSLVDFKKTFINPEILEETGEEWGFEEGCLSIPGIRGDVYRPE 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +RY D +         G+ A  +QHE DHL G LF+D+L  LK+  I KK++ + + 
Sbjct: 121 TLRIRYRDLDWNEHEETYSGMAARIIQHEYDHLLGKLFVDYLPTLKKQFIKKKLTDISKG 180


>gi|160883802|ref|ZP_02064805.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483]
 gi|260170792|ref|ZP_05757204.1| peptide deformylase [Bacteroides sp. D2]
 gi|293372830|ref|ZP_06619208.1| peptide deformylase [Bacteroides ovatus SD CMC 3f]
 gi|299149164|ref|ZP_07042225.1| peptide deformylase [Bacteroides sp. 3_1_23]
 gi|315919126|ref|ZP_07915366.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110887|gb|EDO12632.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483]
 gi|292632205|gb|EFF50805.1| peptide deformylase [Bacteroides ovatus SD CMC 3f]
 gi|298512831|gb|EFI36719.1| peptide deformylase [Bacteroides sp. 3_1_23]
 gi|313693001|gb|EFS29836.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 184

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEEYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|296115067|ref|ZP_06833709.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978404|gb|EFG85140.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 180

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ P  ILR+ +R +   ++  +   I  M   MY   GIGLAA Q+G+  R  ++D+
Sbjct: 14  PILVAPQAILRQKTRLVRPEDTAQLREAIPRMFAAMYKAPGIGLAAPQVGLGLRFALVDV 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    +NPMV INP II  ++  SV +EGCLS+P+  A+V R   + VRY D   +   
Sbjct: 74  ADKDEARNPMVLINPDIIAETETMSVREEGCLSLPNQYAEVARPESVRVRYQDLEGKRHE 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I  DGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K  +LR
Sbjct: 134 IEVDGLLATCIQHEIDHLEGILFVDHLSALKRNMIMRRLAKEQRLR 179


>gi|331697237|ref|YP_004333476.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190]
 gi|326951926|gb|AEA25623.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190]
          Length = 182

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   ++++  L+ ++ + M+   G GLAA QIGV  R+  
Sbjct: 1   MSVQPVRLFGDPVLRTPAVEVTTFDAELRKLVADLTDTMHDEGGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+   A        +NP      D+     EGCLSIP  R D  R   +  R  + + +
Sbjct: 61  YDVDGFAG-----HLVNPTFDVVGDEEQTGPEGCLSIPGLRWDCTRHLHVVARGWNVHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +    LLA C+QHE DHL+G+LF+D L    R +   ++     
Sbjct: 116 PVTVEGSELLARCIQHETDHLDGVLFVDRLDAETRKLAMAEIRAAEW 162


>gi|189461816|ref|ZP_03010601.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136]
 gi|189431410|gb|EDV00395.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136]
          Length = 184

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA Q+G+  R+VVI
Sbjct: 1   MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVI 60

Query: 62  DL----QDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +L    +D    +     +INP I+   ++    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  NLDVLSEDMPEFKDFRRAYINPHILETGEELVSMEEGCLSLPGIHEAVKRPDKIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +      + +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 EDMNPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIKGKLNNMLKGK 173


>gi|54025579|ref|YP_119821.1| peptide deformylase [Nocardia farcinica IFM 10152]
 gi|54017087|dbj|BAD58457.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
          Length = 185

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DPILR  +  + + + ++  L+ ++ + M+   G+G+AA QIGV  R+ V
Sbjct: 1   MTIQPVRLFGDPILRARASEVTEFDRELRQLVTDLTDTMHDDGGVGMAAPQIGVGLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D A        +NP      D+  V  EGCLSIP  R D +R+  + VR +D +  
Sbjct: 61  YDTGDAAG-----HLVNPTYTVVGDEEQVGPEGCLSIPGLRYDTRRALRVHVRGVDMHGA 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                AD LLA C+QHE DHL+G+LFID L    R    + + +
Sbjct: 116 PVEFDADELLARCVQHETDHLDGVLFIDRLDPAARKEAMRAIRE 159


>gi|288550484|ref|ZP_05970614.2| peptide deformylase [Enterobacter cancerogenus ATCC 35316]
 gi|288314935|gb|EFC53873.1| peptide deformylase [Enterobacter cancerogenus ATCC 35316]
          Length = 164

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/160 (42%), Positives = 110/160 (68%), Gaps = 3/160 (1%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++VID+ +  +R
Sbjct: 5   PDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSE--NR 62

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D   +   + AD L
Sbjct: 63  DGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKPFELEADDL 121

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LA C+QHE+DHL G LFID+LS LK+  I +K+ KL ++R
Sbjct: 122 LAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 161


>gi|189485012|ref|YP_001955953.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|238058216|sp|B1GZ10|DEF_UNCTG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|170286971|dbj|BAG13492.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 168

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/159 (42%), Positives = 94/159 (59%), Gaps = 3/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +  + DP LR+ +  + +IN  I  L  +MLE MYS  G+GLAA Q+G+L R  V
Sbjct: 1   MAKLKIKKYGDPALRKRAEAVSEINEIIKELASDMLETMYSASGVGLAAPQVGILLRFCV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+    ++K+P+V INP+II+  ++    +EGCLS P +  +V R   I   Y D N  
Sbjct: 61  IDVDP--NKKSPIVMINPEIIS-GENKITAEEGCLSFPGFYGNVNRFENIIAGYTDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            Q I A   LA  LQHE+DHL+  LFID+L   KR+ I 
Sbjct: 118 RQEIKAQNFLAKALQHEIDHLDAKLFIDYLPDWKRESIE 156


>gi|298372481|ref|ZP_06982471.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275385|gb|EFI16936.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 185

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 100/177 (56%), Gaps = 9/177 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++   +LR V++PI +   +I  LIDNM E M + DGIGLAA QIG+  RL VI
Sbjct: 1   MILPVYLYGSGVLREVAKPITEDYPNIRELIDNMFETMRNADGIGLAAPQIGLSIRLFVI 60

Query: 62  DLQDHAHRKN---------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           D+      ++           +FIN +I     D  +Y+EGCLSIP     V R   I +
Sbjct: 61  DISPLDTERDFPQLRDCPKQKIFINAEITERYGDTVIYEEGCLSIPKINEKVPRPDKIKI 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +Y+D   +      +G  A  +QHE DH++G +F+DH+S L++ +I  K++ +V+ +
Sbjct: 121 KYLDETFREHEDEFEGYFARVIQHECDHIDGKMFVDHISPLRKQLIKSKLADIVKRK 177


>gi|307565540|ref|ZP_07628020.1| peptide deformylase [Prevotella amnii CRIS 21A-A]
 gi|307345699|gb|EFN91056.1| peptide deformylase [Prevotella amnii CRIS 21A-A]
          Length = 186

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR++++ I +   ++  LI +M E   ++DG+GLAA Q+G   R+VVI
Sbjct: 1   MILPIYTYGQPVLRKIAQDIPESYPELQELIADMFETCSASDGVGLAAPQVGKPIRVVVI 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL         ++     FIN  I    D +  V +EGCLS+P     V+R   + V+++
Sbjct: 61  DLDVVSDNFPEYKGFRHAFINGHITEVDDTETEVMEEGCLSLPGLHEKVERPKRVRVKWI 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N +    +  G LA  +QHE DHL G +F D +S  ++ MI KKM  L+Q +
Sbjct: 121 DENMEEHHEWLSGFLARVVQHEFDHLEGKVFTDRVSPFRKQMIKKKMKALLQGK 174


>gi|52080175|ref|YP_078966.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|52785552|ref|YP_091381.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|319646045|ref|ZP_08000275.1| def protein [Bacillus sp. BT1B_CT2]
 gi|52003386|gb|AAU23328.1| polypeptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|52348054|gb|AAU40688.1| Def [Bacillus licheniformis ATCC 14580]
 gi|317391795|gb|EFV72592.1| def protein [Bacillus sp. BT1B_CT2]
          Length = 160

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+V +P  +L   + P+   +  +  L+DNM + M   DG+GLAA QIGV  R  V
Sbjct: 1   MAVKPIVTYPAEVLETPAEPVASFDKSLKKLLDNMYDTMLELDGVGLAAPQIGVSKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R      +NP++I  S +     EGCLS PD   +VKRS ++ V+  D   +
Sbjct: 61  VDIGDDTGRIE---LVNPEVIEESGE-QTGPEGCLSFPDLYGEVKRSDYVKVKAFDRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I A+G LA  L HE+DHL+GILF   ++R       ++M 
Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFTSKVTRYYDAEELEEME 159


>gi|239904668|ref|YP_002951406.1| peptide deformylase [Desulfovibrio magneticus RS-1]
 gi|239794531|dbj|BAH73520.1| peptide deformylase [Desulfovibrio magneticus RS-1]
          Length = 174

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/163 (44%), Positives = 99/163 (60%), Gaps = 1/163 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++ +P P+L + + P+ +I   I  L   M E MY+  GIGLAA Q+G   RL+VIDL 
Sbjct: 4   EILKYPHPVLAKKAEPVAEITDAIRELAAGMAEAMYANQGIGLAAPQVGASIRLIVIDLS 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               R+  M  +NP I   S +    +EGCLS+  YR  V+R+A +TV  +D   Q   I
Sbjct: 64  GPDKREALMTLVNPVITAASGE-QEDEEGCLSVRSYRTKVRRAANVTVTALDLAGQPLTI 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            AD LLA CLQHE+DHL+G+LFID +SRLKR M  K++ +  Q
Sbjct: 123 EADELLAVCLQHEVDHLDGVLFIDRISRLKRAMYDKRVKRWAQ 165


>gi|291333895|gb|ADD93575.1| peptide deformylase [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 171

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P++++ +    LIDNM+  MY + GIGLAA Q+    R++V
Sbjct: 1   MKLLKILEFPDPRLRTKAKPVQEVTNVHKELIDNMIHTMYESKGIGLAATQVDFHERILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF-SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ID+ +   R +P VFINP++      + S Y+EGCLS+P +  ++ R   I V Y+D + 
Sbjct: 61  IDISE--ERDDPQVFINPEVEILNKKEKSGYEEGCLSVPGFYEEIIRPEKIKVTYLDRDG 118

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q +  +GLLA  +QHE+DHL GIL +D++S +KR  I +K+ K  + +
Sbjct: 119 KKQTLMPEGLLAVVIQHEIDHLEGILMVDYISSIKRQRIKQKLQKSAKEK 168


>gi|302341791|ref|YP_003806320.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
 gi|301638404|gb|ADK83726.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
          Length = 170

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L      I++++ ++  L  +M++ MY   G+GLAA Q+G   R+VV
Sbjct: 1   MAILPICKYPDPVLAEKCAEIDRVDDELRRLAQDMIDTMYDAPGVGLAAPQVGRAIRMVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  PMV INP+++       V+ E CLS+PDYRADV R++ + V   D    
Sbjct: 61  VDTAEDDKRGTPMVLINPRVVAKRGQL-VWDEACLSVPDYRADVVRASEVVVEAGDLEGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              I A+GL A CLQHE+DHL+G+LF+DH+S LKR M
Sbjct: 120 DLRIEAEGLTAVCLQHEIDHLDGVLFLDHISSLKRAM 156


>gi|296140267|ref|YP_003647510.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
 gi|296028401|gb|ADG79171.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
          Length = 180

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+PDP+LR  +  +   ++D+  L+D+M++ M+  +G GLAA Q+GV  R+ V
Sbjct: 1   MSVLPIRIYPDPVLRTRADEVTVFDADLARLVDDMIDTMHHHNGAGLAAPQVGVSKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          INP      D+     EGCLSIP+      R   +    +D + +
Sbjct: 61  FGCGGREG-----HIINPVWRAVGDETQTGPEGCLSIPEILEPCTRHLNVVAEGVDVHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I    +LA C+QHE DHL+G+LF+  L    R    K + 
Sbjct: 116 SLAIEGTEILARCIQHETDHLDGVLFLSRLEPEDRKRAMKAIR 158


>gi|86133858|ref|ZP_01052440.1| polypeptide deformylase [Polaribacter sp. MED152]
 gi|85820721|gb|EAQ41868.1| polypeptide deformylase [Polaribacter sp. MED152]
          Length = 196

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/180 (38%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR++   I+K   ++  LI NM E MY+  G+GLAA QIG   RL VI
Sbjct: 1   MILPIVAYGDPVLRKMGVEIDKDYPNLKELIANMKETMYNASGVGLAAPQIGKAIRLFVI 60

Query: 62  DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A             +    V+INPKII    +   + EGCLSIPD R DV R + 
Sbjct: 61  DASPFAEDDDLDDEERATLKDFNRVYINPKIIDEEGEEWTFNEGCLSIPDVREDVTRKSK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+ Y D +        DGL A   QHE DH+ G+LF D +S LK+ +I +K+  + + +
Sbjct: 121 VTLEYQDEDFNTHTEVLDGLAARVFQHEYDHIEGVLFTDKVSSLKKRLIKRKLENISKGK 180


>gi|225698067|pdb|3FWX|A Chain A, The Crystal Structure Of The Peptide Deformylase From
           Vibrio Cholerae O1 Biovar El Tor Str. N16961
 gi|225698068|pdb|3FWX|B Chain B, The Crystal Structure Of The Peptide Deformylase From
           Vibrio Cholerae O1 Biovar El Tor Str. N16961
          Length = 169

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 110/168 (65%), Gaps = 3/168 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++ FPD  LR V++P+E++  +I  ++D+ LE  Y+ +GIGLAA Q+ +  R+VVID
Sbjct: 3   VLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDXLETXYAEEGIGLAATQVDIHQRIVVID 62

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + +   R  P V INP+II    +  + +EGCLS+P  RA V R+A +TV+ +D N Q  
Sbjct: 63  ISET--RDQPXVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 119

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 120 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|25028276|ref|NP_738330.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|259507334|ref|ZP_05750234.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|39931152|sp|Q8FT51|DEF1_COREF RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|23493560|dbj|BAC18530.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314]
 gi|259165045|gb|EEW49599.1| peptide deformylase [Corynebacterium efficiens YS-314]
          Length = 169

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 1/159 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + IF DP+L   +  +   +  +  LID+M + M    G+GLAA Q+GVL R+ V
Sbjct: 1   MTVRDVRIFGDPVLTSRADEVVDFDESLATLIDDMFDTMEDAGGVGLAANQVGVLRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             +NP      ++    +EGCLSIPD  A+  R   + +   D +  
Sbjct: 61  FDCSHVDGGLR-GHVVNPVWEPIGEETQTGKEGCLSIPDVSAETTRYETVKLSGQDRDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              + A GLL+ C+QHE DHL+G+LF+  L   +R    
Sbjct: 120 PIGLVASGLLSRCIQHETDHLDGVLFLKRLDPAERKAAM 158


>gi|255325044|ref|ZP_05366150.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
 gi|255297609|gb|EET76920.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
          Length = 170

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L I+ DP+L   +  I K ++ +  L  +MLE M +  G+GLAA Q+G+L R+ V
Sbjct: 1   MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDNAGGVGLAANQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   H         +NP      +      EGCLSIP   A+  R   + V   D   +
Sbjct: 61  YDCS-HTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GL+A C+QHE DHL+G+LF+  L    R    + + +
Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRLEAPVRKEAMRAIRE 163


>gi|256379232|ref|YP_003102892.1| peptide deformylase [Actinosynnema mirum DSM 43827]
 gi|255923535|gb|ACU39046.1| peptide deformylase [Actinosynnema mirum DSM 43827]
          Length = 181

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  + + + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPAVEVTEFDVELRKLVKDLWDTMSDAGGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                 A        +NP      D+     EGCLSIP    D  R   +  R  + + +
Sbjct: 61  YHCDGFAG-----HMVNPTFDVVGDETQDGPEGCLSIPGMSWDCVRHRQVVARGWNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +    LLA C+QHE DHL+G++F+D L    R    +++ +
Sbjct: 116 PVEVEGTDLLARCIQHETDHLDGVVFVDRLDEETRKRAMREIRQ 159


>gi|83594679|ref|YP_428431.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
 gi|83577593|gb|ABC24144.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
          Length = 172

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 110/167 (65%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP L + + P+E ++  I  L+D+MLE MY   GIGLAA Q+GVL R++V
Sbjct: 1   MALLPILTAPDPRLTKKALPVETVDVSIRKLMDDMLETMYLAPGIGLAAPQVGVLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         PM   NP+II  S+D   Y+EGCLS+P+    V R   + VRY+D + +
Sbjct: 61  LDPAREDEAPRPMRLANPEIIWSSEDTKPYEEGCLSVPEQYDTVVRPDRVRVRYLDPDNE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + I ADGLLA  LQHE+DHL+GILF+D+LS LKR+M+ +K+ K+ +
Sbjct: 121 IREIDADGLLAVILQHEIDHLDGILFVDYLSSLKRNMMLRKLRKMKR 167


>gi|331699449|ref|YP_004335688.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190]
 gi|326954138|gb|AEA27835.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190]
          Length = 190

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 7/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+L   +RP+ + +  +  L+D+M E M +  G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIRIIGDPVLHAPTRPVVEFDDALRELVDDMFETMAAAHGVGLAANQIGVDLRVFV 60

Query: 61  IDLQDHAHR-KNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D   +     V +NP     +I     D    +EGCLS+P  +    R+ +  V  
Sbjct: 61  YDCPDEVTKTMARGVVVNPVLETSEIPETMPDPEEDEEGCLSVPGEQFPTGRADWARVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +D + Q       G LA C QHE+DHL+G L+++ L+  +    +KKM K  
Sbjct: 121 VDVDGQPVEAEGRGFLARCFQHEVDHLDGHLYVERLTG-RHLRASKKMLKAA 171


>gi|298504245|gb|ADI82968.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens
           KN400]
          Length = 167

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP+L++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MVRTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R   +V INP II   +  S  +EGCLS+P Y A+V R   + V+ ++   + 
Sbjct: 61  DVSQRDERPELIVCINPVII-HGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +  A+GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  ++ +  
Sbjct: 120 VVHRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTEEE 167


>gi|306440704|pdb|3OCA|A Chain A, Crystal Structure Of Peptide Deformylase From Ehrlichia
           Chaffeensis
 gi|306440705|pdb|3OCA|B Chain B, Crystal Structure Of Peptide Deformylase From Ehrlichia
           Chaffeensis
          Length = 209

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/181 (38%), Positives = 99/181 (54%), Gaps = 17/181 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L   S  +EK++  I  L+D+M E M++  G+GLAAVQ+GV  R++V
Sbjct: 22  MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILV 81

Query: 61  IDLQDHAH-----------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           +++ +                       P   INPKI+  S +    +EGCLS+P Y   
Sbjct: 82  MNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDY 141

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + R   I V+Y+D N    II A G LA CLQHE+DHLNG +F+ +LS+ KRD   +K+ 
Sbjct: 142 IVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVK 201

Query: 164 K 164
           K
Sbjct: 202 K 202


>gi|255560876|ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
 gi|223539350|gb|EEF40941.1| polypeptide deformylase, putative [Ricinus communis]
          Length = 282

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/162 (37%), Positives = 89/162 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILRR ++ I+  + ++  L+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 92  IVEYPDPILRRKNKRIDTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVG 151

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V INP++  +S     + EGCLS P   ADV R   + +   D N     + 
Sbjct: 152 ERGEGEEIVLINPRLNKYSKKIVPFNEGCLSFPGIYADVLRPESVKIDARDINGARFTVN 211

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             GL A   QHE DHL GILF D ++    D I  ++  L +
Sbjct: 212 LSGLPARVFQHEYDHLEGILFFDRMTDEVLDSIRAQLQALEK 253


>gi|305680739|ref|ZP_07403546.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
 gi|305658944|gb|EFM48444.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
          Length = 169

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + IF DP+L   +  I   +  + +L+++ML+ M +  G+GLAA QIGVL R+ V
Sbjct: 1   MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMLDTMDAAGGVGLAANQIGVLRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             INP+     ++  +  EGCLSIP+  AD +R   + V   D +  
Sbjct: 61  FDCT-TEEDGMRGHIINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I A GL+A C+QHE DHL+G+LF+  L+  +R      + +
Sbjct: 120 PLTITASGLMARCIQHETDHLDGVLFLRRLTPERRKEAMAYIRQ 163


>gi|259417997|ref|ZP_05741916.1| peptide deformylase [Silicibacter sp. TrichCH4B]
 gi|259346903|gb|EEW58717.1| peptide deformylase [Silicibacter sp. TrichCH4B]
          Length = 169

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 88/160 (55%), Gaps = 1/160 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +PDP L  +  P+ +   D+  LI NMLE MY   G GLAA Q+GVL RL V
Sbjct: 1   MSLLPIVKWPDPRLTAICAPVAE-GEDLSGLIANMLETMYDAPGRGLAAPQVGVLKRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      +NP+V +NP I+  + + +  +EGCLSIPD    V R   I VR+ D    
Sbjct: 60  MDVDWKDGARNPVVMVNPDILWRATEIAEGEEGCLSIPDVTTPVTRPTEIRVRWYDAKNT 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                 DG  A C+QHE DHL+G +  DHLS   R    +
Sbjct: 120 VNEQCFDGFAARCIQHEYDHLDGRVTFDHLSPEMRRTAQQ 159


>gi|282881719|ref|ZP_06290382.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1]
 gi|281304478|gb|EFA96575.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1]
          Length = 187

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 99/175 (56%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V++ I     ++  LI +M E M ++DG+GLAA QIG   R+VVI
Sbjct: 1   MILPIYIYGQPVLRKVAQDITPAYENLQQLIADMFETMDASDGVGLAAPQIGKSIRVVVI 60

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL     +   ++     +INP II   +D   S  +EGCLSIP     V R   I V+Y
Sbjct: 61  DLNVLSDELPEYKDFRRAYINPHIIEIDEDSPVSTMEEGCLSIPGIHESVTRHTRIRVQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           MD + Q    + +G LA  +QHE DHL G +F+D +S  ++ +I  K+  + Q +
Sbjct: 121 MDSDFQPHDEWVEGYLARVMQHEFDHLEGKMFVDRVSPFRKQLIKNKLKAMTQGK 175


>gi|298207815|ref|YP_003715994.1| peptide deformylase [Croceibacter atlanticus HTCC2559]
 gi|83850453|gb|EAP88321.1| peptide deformylase [Croceibacter atlanticus HTCC2559]
          Length = 196

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + +P+L++ ++ I K    +  LI+NM E MY   G+GLAA Q+G+  RL VI
Sbjct: 1   MILPIVAYGNPVLKKKAKDITKDYPKLDELIENMWETMYGAHGVGLAAPQVGLPIRLFVI 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A  +               +FINP I   + D   + EGCLSIPD R DV R   
Sbjct: 61  DPSPFADDEELTEEERKQLTGLKKLFINPVITEETGDEWAFSEGCLSIPDVREDVFRQPD 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y+D N +       G+ A  +QHE DH+ GILF D LS LK+ +I  K++ + + +
Sbjct: 121 ITIEYVDENFKAHTETYTGIAARVIQHEYDHIEGILFTDKLSSLKKRLIKGKLNNISKGK 180


>gi|15604081|ref|NP_220596.1| peptide deformylase [Rickettsia prowazekii str. Madrid E]
 gi|6225256|sp|Q9ZDV8|DEF_RICPR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|3860772|emb|CAA14673.1| METHIONYL-TRNA DEFORMYLASE (def) [Rickettsia prowazekii]
 gi|292571805|gb|ADE29720.1| Polypeptide deformylase [Rickettsia prowazekii Rp22]
          Length = 175

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L++ S+P+ +        + +MLE MY+ DG GLAAVQ+G+L R++V
Sbjct: 1   MSIFSIVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNADGAGLAAVQVGILLRILV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++++   + P     +  +NP+II  S +     EGC+S+P  R +V R   + +RY+
Sbjct: 61  IDIKEYDPVERPKDFYPLFIVNPEIIEKSTELVTANEGCISLPKQRIEVTRPESVKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + Q + A+  LA  +QHE DHL G L +D+LS LKRD++ +K+ KL
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKL 170


>gi|153808041|ref|ZP_01960709.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185]
 gi|149129650|gb|EDM20864.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185]
          Length = 184

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +      +     +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEDYPEFKGFNKAYINPHILEIGGEEVSMEEGCLSLPGIHETVKRGNKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 EDFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISALRKQMIKGKLNTMLKGK 173


>gi|126726109|ref|ZP_01741951.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
 gi|126705313|gb|EBA04404.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
          Length = 159

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 102/155 (65%), Gaps = 1/155 (0%)

Query: 15  RRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPM 73
           ++++ PI  ++ ++  L D+ML  MY   GIGLAA QIGVL RL+V+D  ++      P+
Sbjct: 2   KKIATPIVDLSDELRVLADDMLATMYEAPGIGLAAPQIGVLERLIVLDCVKEEGADPRPV 61

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
              NP+I   SD+ SVY EGCLSIP+  A+V R A ++VR+M  +        DGL ATC
Sbjct: 62  AMFNPEITASSDELSVYDEGCLSIPEIYAEVTRPAEVSVRWMGLDGAEHNETFDGLWATC 121

Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +QHE+DHLNG LFID+L  LKR MIT+KM KL + 
Sbjct: 122 VQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRE 156


>gi|224023749|ref|ZP_03642115.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
           18228]
 gi|224016971|gb|EEF74983.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
           18228]
          Length = 184

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA Q+G+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVV 60

Query: 62  DLQ----DHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +L     D    +    V+INP I+   D+    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  NLDVLSDDMPEFKDFKRVYINPHILETGDEMVSMEEGCLSLPGIHESVKRPDRIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N      + +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +V  +
Sbjct: 121 ENMTAHDEWVEGYLARVMQHEFDHLDGTMFIDHLSSLRKQMIRGKLNNMVNGK 173


>gi|237716076|ref|ZP_04546557.1| peptide deformylase [Bacteroides sp. D1]
 gi|237722139|ref|ZP_04552620.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4]
 gi|262407688|ref|ZP_06084236.1| peptide deformylase [Bacteroides sp. 2_1_22]
 gi|294643796|ref|ZP_06721594.1| peptide deformylase [Bacteroides ovatus SD CC 2a]
 gi|294808456|ref|ZP_06767209.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b]
 gi|298480836|ref|ZP_06999031.1| peptide deformylase [Bacteroides sp. D22]
 gi|229443723|gb|EEO49514.1| peptide deformylase [Bacteroides sp. D1]
 gi|229447949|gb|EEO53740.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4]
 gi|262354496|gb|EEZ03588.1| peptide deformylase [Bacteroides sp. 2_1_22]
 gi|292640885|gb|EFF59105.1| peptide deformylase [Bacteroides ovatus SD CC 2a]
 gi|294444384|gb|EFG13098.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b]
 gi|295085225|emb|CBK66748.1| peptide deformylase [Bacteroides xylanisolvens XB1A]
 gi|298272859|gb|EFI14425.1| peptide deformylase [Bacteroides sp. D22]
          Length = 184

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEEYPEFKDFNKAYINPHILEVGGEEVNMEEGCLSLPGIHETVKRGDKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|300871518|ref|YP_003786391.1| peptide deformylase [Brachyspira pilosicoli 95/1000]
 gi|300689219|gb|ADK31890.1| peptide deformylase [Brachyspira pilosicoli 95/1000]
          Length = 177

 Score =  197 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + LVI+ D  L+  S  +E ++ +I+ LID+M E MY  +G+GLAAVQ+GVL R++VI
Sbjct: 1   MIRKLVIYGDDRLKEKSSYVENVDEEILTLIDDMFETMYKANGVGLAAVQVGVLKRVIVI 60

Query: 62  DLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            + D      P   +  INP+II   +D  + +EGCLS P    +V R   I V+Y+D  
Sbjct: 61  SVPDFDDETKPDFKLALINPEIIWHGEDTEILEEGCLSFPKISDEVARYKEIKVKYIDTE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            + QI+ A   +A  LQHE+DH NGI FID L   ++  + K + +L
Sbjct: 121 NKEQILDAKDYIAKVLQHEIDHTNGITFIDRLESYQKRRLKKDLKEL 167


>gi|228473115|ref|ZP_04057872.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275697|gb|EEK14474.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
          Length = 198

 Score =  197 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+   PI K   ++  LI++M + MY ++G+GLAA Q+G+  RL V+
Sbjct: 1   MILPIVAYGDPVLRKECMPIAKDYPELPKLIEDMYQTMYHSNGVGLAAPQVGLAIRLFVV 60

Query: 62  DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D +                +     FIN KI+    +   + EGCLSIP    DV R   
Sbjct: 61  DTEPFCENDDLSDAERDYLKGFKKAFINAKILKEEGEPWPFSEGCLSIPGISEDVLRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + Y D +         GL+A  +QHE DH+ GILF DHLS  K+ ++  K++ +   +
Sbjct: 121 IVIEYQDEHFATHTETFSGLVARVIQHEYDHIEGILFTDHLSSFKKQLLKNKLNNISNGK 180


>gi|325534093|pdb|3QU1|A Chain A, Peptide Deformylase From Vibrio Cholerae
 gi|325534094|pdb|3QU1|B Chain B, Peptide Deformylase From Vibrio Cholerae
          Length = 171

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y+T +GIGLAA Q+G    +V
Sbjct: 4   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D  +R  P+V INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 63  VIDLSD--NRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 120 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 169


>gi|158313554|ref|YP_001506062.1| peptide deformylase [Frankia sp. EAN1pec]
 gi|238686856|sp|A8LE21|DEF_FRASN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158108959|gb|ABW11156.1| peptide deformylase [Frankia sp. EAN1pec]
          Length = 183

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR V+ P+   + ++  L+D++ + M    G+GLAA Q+GV  R+  
Sbjct: 1   MSVRDIRLLGDPVLRTVADPVATFDRELRRLVDDLADTMRDAGGVGLAAPQLGVSLRIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             L D     +    INP +  FS++    +EGCLS+P    D++R   +     + +  
Sbjct: 61  Y-LDDSDEVGH---LINPVLGPFSEEMMDGEEGCLSLPGLAFDLRRPERVLAVGQNSHGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +   G+L+ CLQHE DHL+GILFID L +  +    K + +     +
Sbjct: 117 PVTVEGSGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIREAEWSNE 166


>gi|254393357|ref|ZP_05008503.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|294811339|ref|ZP_06769982.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|326439928|ref|ZP_08214662.1| polypeptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|197706990|gb|EDY52802.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|294323938|gb|EFG05581.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064]
          Length = 186

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 74/149 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL ++ +P+L      +      +  L++++   MY+ +G+GLAA Q+GV  R+ V D
Sbjct: 13  VRPLSLYGNPVLHTPCETVTDFGPALGKLVEDLFATMYARNGVGLAANQMGVGLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A V+R     V   D +    
Sbjct: 73  CPDDDEVRHLGHIVNPRLVAADGVEVRGPEGCLSLPGLEAPVERYDRAVVEGQDSDGGPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            +   G  A CLQHE DHL+G ++ D L 
Sbjct: 133 RVEGTGFFARCLQHETDHLDGSVYADRLP 161


>gi|256374580|ref|YP_003098240.1| peptide deformylase [Actinosynnema mirum DSM 43827]
 gi|255918883|gb|ACU34394.1| peptide deformylase [Actinosynnema mirum DSM 43827]
          Length = 195

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +RP+++ + ++  LI +M E M + +G+GLAA QIGV  RL V
Sbjct: 1   MAVHPIRIAGDPVLHNPTRPVDEHDDELRALIADMYETMAAANGVGLAANQIGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    +     +NP + T        D     EGCLS P       R+++  V   
Sbjct: 61  YDCPDDEGVRRRGEVVNPVLQTSDVPLGMPDPDDDYEGCLSAPGESYPTGRASWAKVTGT 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N     +   G  A CLQHE DHL+G L++D L   +    +KKM K
Sbjct: 121 DGNGDPVEVEGTGFFARCLQHETDHLDGYLYLDRLVG-RHKRASKKMIK 168


>gi|225012717|ref|ZP_03703152.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
 gi|225003250|gb|EEG41225.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
          Length = 195

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 97/179 (54%), Gaps = 12/179 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+L++ +  I +   ++  LI+NM E MY+++G+GLAA QIG+  RL VI
Sbjct: 1   MILPIVAYGAPVLKKEAAEISEEYPNLDQLIENMWETMYASNGVGLAAPQIGLSIRLFVI 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    +                  VFINP +I        + EGCLSIPD R DV R   
Sbjct: 61  DTAPFSEDDELDELEAETLKSFKKVFINPVVIEEDGSLWEFNEGCLSIPDVREDVSRHER 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           I + Y D   + Q +   GL A  +QHE DH+ G+LF DHL+ LKR ++  +++ + + 
Sbjct: 121 IKIHYFDQQFKEQELVLTGLAARVVQHEYDHIEGVLFTDHLTPLKRRLLKNRLNSISKG 179


>gi|39995240|ref|NP_951191.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
 gi|39982002|gb|AAR33464.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
          Length = 182

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP+L++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 16  MVRTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 75

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R   +V INP II   +  S  +EGCLS+P Y A+V R   + V+ ++   + 
Sbjct: 76  DVSQRDERPELIVCINPVII-HGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEE 134

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +  A+GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  ++ +  
Sbjct: 135 VVHRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTEEE 182


>gi|160893328|ref|ZP_02074115.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50]
 gi|156865020|gb|EDO58451.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50]
          Length = 153

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 5/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D +LR+  +P+ ++   +  LID+M + MY  +G+GLAA Q+G++ R+VV
Sbjct: 1   MATRKIRIDGDSVLRKKCKPVTEMTPRLSQLIDDMFDTMYEANGVGLAAPQVGIVKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    ++P+  INP+II  S +     EGCLS+P     V R   +  + +D +  
Sbjct: 61  IDIGD----EHPLTLINPEIIETSGE-QTGDEGCLSLPGKVGQVTRPMHVVCKALDRDMN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  +GLLA  + HE DHL GIL+ D +  
Sbjct: 116 EITVTGEGLLARAICHETDHLEGILYKDKVED 147


>gi|312195559|ref|YP_004015620.1| peptide deformylase [Frankia sp. EuI1c]
 gi|311226895|gb|ADP79750.1| peptide deformylase [Frankia sp. EuI1c]
          Length = 183

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  +  +   + ++  L++++ E M+   G GLAA Q+GV  R+  
Sbjct: 1   MAVRDIRLFGDPVLRTKAEQVTTFDKELRKLVNDLGETMWEASGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             L D     +    INP +  FS++    +EGCLS+P    ++KR   +     +    
Sbjct: 61  F-LDDDDEIDH---LINPVLGPFSEELQDGEEGCLSLPGLSFELKRPERVLAIGQNMYGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   G+++ CLQHE DHL+GILFID L R  +    K + +   
Sbjct: 117 PVQVEGSGIVSRCLQHETDHLDGILFIDKLDRETKKAAMKAIREAEW 163


>gi|268316440|ref|YP_003290159.1| peptide deformylase [Rhodothermus marinus DSM 4252]
 gi|262333974|gb|ACY47771.1| peptide deformylase [Rhodothermus marinus DSM 4252]
          Length = 189

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/177 (36%), Positives = 108/177 (61%), Gaps = 9/177 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++ DPILR  ++P+   + ++  L+D+M+E M++  GIGLAA Q+G   R+ V+
Sbjct: 1   MVLPIHVYGDPILRERAQPVAADSPELQQLLDDMVETMHAASGIGLAAPQVGRRERVFVV 60

Query: 62  DLQDHAHR---------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           DL                 PM FINP+I+  S++   ++EGCLSIPD R  V+R   + +
Sbjct: 61  DLTPMKEELEAEGETLPPMPMFFINPEIVWTSEEQCSFEEGCLSIPDVREVVERPVAVRI 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           RY+D   + Q + A G+LA  +QHE DHL GILFID +S  +R ++ +++ ++ + +
Sbjct: 121 RYLDRQFRPQELEARGMLARVIQHEYDHLEGILFIDRISAFRRQLLRRRLREIARGQ 177


>gi|330993401|ref|ZP_08317336.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1]
 gi|329759431|gb|EGG75940.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1]
          Length = 180

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ P  +LR+ +R +   +   +  +I  M   MY   GIGLAA Q+G+  R  ++D+
Sbjct: 14  PILVAPQAVLRQKTRLVRPEDMDGLRTIIPRMFAAMYQAPGIGLAAPQVGLGMRFAIVDV 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    +NP+V INP++I  +D  +  +EGCLS+P+  A+V R   + VRY D   + Q 
Sbjct: 74  SDKDGPRNPIVLINPEVIAETDSMAAREEGCLSLPNQYAEVVRPEAVRVRYQDMEGKVQE 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + AD LLATCLQHE+DHL GILF+DHLS LKR+MI ++++K  + +
Sbjct: 134 LEADDLLATCLQHEIDHLEGILFVDHLSTLKRNMIMRRLAKEQRQK 179


>gi|88607030|ref|YP_505871.1| peptide deformylase [Anaplasma phagocytophilum HZ]
 gi|88598093|gb|ABD43563.1| peptide deformylase [Anaplasma phagocytophilum HZ]
          Length = 187

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 16/185 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +PLV+ PD  L   S  + + +      +L+++M + MY+  GIGLAAVQ+GV  R+
Sbjct: 1   MSVRPLVVLPDSRLFLCSEEVRETDFCEKFNSLVEDMFDTMYAEQGIGLAAVQVGVHKRI 60

Query: 59  VVIDLQDHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
            VIDL                      PMV INP+I+  S D    +EGCLS+PD R  V
Sbjct: 61  FVIDLGPKTEESSEIADDPDGYHSTCGPMVVINPEIVEKSVDLVSMEEGCLSVPDQRELV 120

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            R   I ++Y D + + +I+ A GLL+ CLQHE+DHLNG +F+ H+S+LKRD++ +KM K
Sbjct: 121 VRPERIVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNGTVFLKHISKLKRDLVMQKMRK 180

Query: 165 LVQLR 169
              LR
Sbjct: 181 AASLR 185


>gi|291612480|ref|YP_003522637.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
 gi|291582592|gb|ADE10250.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
          Length = 167

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L +V++ +E+IN     L+ +M E MY+  GIGLAA Q+    RL+V
Sbjct: 1   MAILPIIQYPDERLHKVAKKVEQINEATRKLVRDMAETMYAAPGIGLAATQVDKHIRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +     +  VFINP+++    D    +EGCLS+P     V R+ F+TV  +D + +
Sbjct: 61  IDVSET--HDDLKVFINPELVDSMGDKE-NEEGCLSVPGIYEKVTRAEFVTVNALDEHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G +F++ LS LK+  I  K+ K  + 
Sbjct: 118 PFTLNAEGLLAVCIQHEMDHLQGRVFVEKLSHLKQTRIRAKLKKQRRE 165


>gi|295094723|emb|CBK83814.1| peptide deformylase [Coprococcus sp. ART55/1]
          Length = 155

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 5/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+V RP+EK++   + LID+M + MY  +G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRNIRYDGDDILRKVCRPVEKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     NP+  INP I   SD     +EGCLS+P     V R   +  +  D N +
Sbjct: 61  IDVGD----DNPLCLINPVITE-SDGEQTGEEGCLSLPGKFGTVTRPMHVICKAFDENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  +GLLA  + HELDHL+G L+ D +  
Sbjct: 116 EFTVEGEGLLARAICHELDHLDGKLYKDLVED 147


>gi|51892481|ref|YP_075172.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
 gi|81692121|sp|Q67PR5|DEF_SYMTH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|51856170|dbj|BAD40328.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
          Length = 217

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 89/154 (57%), Gaps = 3/154 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P  +LR+ ++P+ KIN+ I  L+D+M E MY+  G+GLAA Q+GV  RL+V
Sbjct: 1   MAILEIVKEPAEVLRKKAKPVTKINASIRKLLDDMTETMYAAPGVGLAAPQVGVSKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D QD          INP+I+   + +    EGCLSIP    DV R   + V  +D   +
Sbjct: 61  VDPQD--GSGQLYQLINPEIVKA-EGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I A+G LA   QHE+DHL+GIL+ D  + L+
Sbjct: 118 KVWIDAEGYLARIFQHEIDHLDGILYTDKCTNLR 151


>gi|326335909|ref|ZP_08202086.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691873|gb|EGD33835.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 198

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V  PI     ++  LI++M + MY + G+GLAA Q+G+  RL V+
Sbjct: 1   MILPIIAYGDPVLRKVCEPITADYPELSKLIEDMFQTMYKSHGVGLAAPQVGLPIRLFVV 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    +  ++               FIN KII+      ++ EGCLSIP    DV R   
Sbjct: 61  DTIGFSENEDLTREEKEYLKNFKRPFINAKIISEEGTPWMFNEGCLSIPGINEDVSRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + Y D           GL+A  +QHE DH  G LF D+LS  K+ ++  K++ +   +
Sbjct: 121 IEIEYQDEQFNIHRETFSGLVARVIQHEYDHTEGKLFTDYLSSFKKQLLKNKLNNISNGK 180


>gi|258622314|ref|ZP_05717340.1| peptide deformylase [Vibrio mimicus VM573]
 gi|258624834|ref|ZP_05719762.1| peptide deformylase [Vibrio mimicus VM603]
 gi|262164774|ref|ZP_06032512.1| peptide deformylase [Vibrio mimicus VM223]
 gi|262173015|ref|ZP_06040692.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|258582832|gb|EEW07653.1| peptide deformylase [Vibrio mimicus VM603]
 gi|258585638|gb|EEW10361.1| peptide deformylase [Vibrio mimicus VM573]
 gi|261890373|gb|EEY36360.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|262027154|gb|EEY45821.1| peptide deformylase [Vibrio mimicus VM223]
          Length = 168

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y+T +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D  +R  PMV INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D + 
Sbjct: 60  VIDLSD--NRDEPMVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I +   LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLKIESSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|218887129|ref|YP_002436450.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758083|gb|ACL08982.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 184

 Score =  196 bits (500), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 2/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L      I +I  +I  L  +M E MY  DGIGLAA Q+G   RL+V+
Sbjct: 1   MIREVLQYPDPRLAVECEDITEITDEIRQLAADMAETMYRQDGIGLAAPQVGEHCRLIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           D+     R+  M F+NP++   + D    +EGCLS+P  YRA V RS  + +   D +  
Sbjct: 61  DVSGPEKREALMTFVNPRL-ELTGDKVDSEEGCLSVPGGYRATVTRSDTVRLTARDLDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA CLQHE+DHL G LFIDH+SRLKR +   ++ K+ +
Sbjct: 120 EVCMDADGLLAVCLQHEVDHLKGTLFIDHISRLKRTLYDSRVKKMQK 166


>gi|198275233|ref|ZP_03207764.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135]
 gi|198271816|gb|EDY96086.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135]
          Length = 184

 Score =  196 bits (500), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ ++ I      +  LI NM E M   DG+GLAA QIG+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRQEAQDITPDYPGLKELITNMFETMDRADGVGLAAPQIGLPIRVVVV 60

Query: 62  DLQ----DHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +L     D    +     +INP I+    +    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  NLDVLSDDMPEFKDFKRTYINPHILETGGELVSMEEGCLSLPGIHESVKRPDKIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N Q    + +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +V  +
Sbjct: 121 ENMQPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIRGKLNSMVNGK 173


>gi|308272079|emb|CBX28687.1| Peptide deformylase [uncultured Desulfobacterium sp.]
          Length = 177

 Score =  196 bits (500), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 103/170 (60%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L   ++P++ IN+D+  +ID+M+E MY   GIGLA++QIG    ++V
Sbjct: 7   MAILDILTYPDRFLTNTAKPVKGINADLQKIIDDMIETMYDAPGIGLASIQIGCDKSMIV 66

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+    H+++  V +NP II    +     EGCLS+PD R+DVKR+A + V  +D    
Sbjct: 67  YDIDQTEHKRSIQVLLNPVIIETDGEIVSNNEGCLSVPDLRSDVKRAASVIVEALDREGN 126

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A   LA  LQHE+DHLNG+LF+D +S LKR++  + + K  +  +
Sbjct: 127 PLKIEAHDQLAVVLQHEIDHLNGVLFLDRISTLKRELYKRHVKKQQKKNE 176


>gi|311894799|dbj|BAJ27207.1| putative polypeptide deformylase [Kitasatospora setae KM-6054]
          Length = 181

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ IF DP+LR  ++P+   + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MAVQPIRIFGDPVLRATAKPVTVFDKELRKLVKDLTDTMLEAPGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            INP + + +++     EGCLS+P  R D +R+  +  + ++ + +
Sbjct: 61  YNVDGVVG-----HLINPDL-SLTEEEQDGPEGCLSLPGLRFDTRRAYGVVAKGVNMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +    LLA C+QHE DHL+GI+FID L R  R    K + +    
Sbjct: 115 PVEVEGTQLLARCIQHETDHLDGIIFIDRLDRETRKAAMKAIREAEWG 162


>gi|91205375|ref|YP_537730.1| peptide deformylase [Rickettsia bellii RML369-C]
 gi|91068919|gb|ABE04641.1| Polypeptide deformylase [Rickettsia bellii RML369-C]
          Length = 175

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 72/172 (41%), Positives = 112/172 (65%), Gaps = 5/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+ + ++N+ I   +D+M+E MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   K P     +  +NP+II  S++  +  EGC+S+P+ R ++ RS  I +RY+
Sbjct: 61  IDIKDHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D + + Q + A+  LA  +QHE DHL G L ID+LS +KRD+  +K+ KL +
Sbjct: 121 DYHNKPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRDIALRKLRKLKK 172


>gi|327402962|ref|YP_004343800.1| peptide deformylase [Fluviicola taffensis DSM 16823]
 gi|327318470|gb|AEA42962.1| peptide deformylase [Fluviicola taffensis DSM 16823]
          Length = 198

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 65/181 (35%), Positives = 94/181 (51%), Gaps = 14/181 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++ +  I+    ++  LI++M E MY   G+GLAA QI    RL V+
Sbjct: 1   MILPIVAYGDPVLKKEAVEIDANYPELKKLIEDMFETMYEASGVGLAAPQINRSIRLFVV 60

Query: 62  DLQDHAH--------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           D    A                    VFINP I   + +   + EGCLSIP  R +V R 
Sbjct: 61  DGSPFAETDEDEEEDPKAEGMEGFKRVFINPIIEEETGESWGFHEGCLSIPKIREEVMRK 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I + Y D N Q    + DG  A  +QHE DH+ G+LF DHLS LKR +++K++  + Q
Sbjct: 121 EKIRITYYDENWQLHDEWFDGYKARIIQHEYDHIEGVLFTDHLSVLKRRLLSKRLQNISQ 180

Query: 168 L 168
            
Sbjct: 181 G 181


>gi|302877267|ref|YP_003845831.1| peptide deformylase [Gallionella capsiferriformans ES-2]
 gi|302580056|gb|ADL54067.1| peptide deformylase [Gallionella capsiferriformans ES-2]
          Length = 167

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  +++ + ++N     L+ +M E MY+  G+GLAA Q+ V  +++V
Sbjct: 1   MAILQILQYPDERLHTIAKKVVQVNDVTRKLVQDMAETMYAAPGVGLAATQVNVHEQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +       +VFINP+I+  S +    +EGCLS+P    +V+R+  I+VR ++   +
Sbjct: 61  VDVSET--HDELLVFINPEILHRSGE-QEGEEGCLSVPGIYENVRRADKISVRALNQQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+G LA C+QHE+DHL+G +F+++LS+LK+  +  K+ K  + 
Sbjct: 118 SFTLDAEGFLAVCIQHEVDHLHGRVFVEYLSQLKQSRLRAKLKKRRRE 165


>gi|262403341|ref|ZP_06079901.1| peptide deformylase [Vibrio sp. RC586]
 gi|262350840|gb|EEY99973.1| peptide deformylase [Vibrio sp. RC586]
          Length = 168

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y+T +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D  +R  PMV INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D + 
Sbjct: 60  VIDLSD--NRDEPMVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|51244598|ref|YP_064482.1| peptide deformylase [Desulfotalea psychrophila LSv54]
 gi|81692939|sp|Q6AQ98|DEF_DESPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|50875635|emb|CAG35475.1| probable peptide deformylase [Desulfotalea psychrophila LSv54]
          Length = 169

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 68/166 (40%), Positives = 97/166 (58%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PDP+LR+ +  I   +  ++ L ++M E MY   GIGLAA QIG   +LVV
Sbjct: 1   MAILKICTYPDPVLRKETVAITVFDEKLVKLTEDMAETMYDAPGIGLAAPQIGESLKLVV 60

Query: 61  IDLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +        ++  MV  NP+I+   ++  V +EGCLS+P+  A VKR   I V Y D N 
Sbjct: 61  VSTARREDSKQEYMVMANPEIVEK-EESQVDEEGCLSVPELLAMVKRYRKIKVNYQDING 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +   +  +   A  LQHE+DHLNGILF+DHLS LKR++  KK+ K 
Sbjct: 120 EPCSMTVEDRFAVVLQHEIDHLNGILFLDHLSSLKRNLYKKKVKKW 165


>gi|163841093|ref|YP_001625498.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
 gi|162954569|gb|ABY24084.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
          Length = 189

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  LI +M E M   DG+GLAA Q+GV  ++  
Sbjct: 1   MAILEIRIMGDPVLRTVAEPVTEFGPELAKLIADMFETMDDVDGVGLAAPQVGVSKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             + + +        INP +     +     EGCLS+P     V+R     VR MD N  
Sbjct: 61  YRIGELSG-----HVINPVLENGEANQPSGAEGCLSVPGLGYAVERKQTSRVRGMDMNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             +I ADG+LA C+QHE DHLNG LFID L+   R    + + 
Sbjct: 116 PVLIEADGMLARCMQHETDHLNGKLFIDRLTGDDRRAAMRTIR 158


>gi|33357295|pdb|1LME|A Chain A, Crystal Structure Of Peptide Deformylase From Thermotoga
           Maritima
 gi|33357296|pdb|1LME|B Chain B, Crystal Structure Of Peptide Deformylase From Thermotoga
           Maritima
          Length = 176

 Score =  196 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 95/162 (58%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D+  
Sbjct: 16  IRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVG- 74

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EG LS P+   +++RS  I V+Y +   ++    
Sbjct: 75  ----NGPVAVINPEILEIDPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 130

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 131 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 172


>gi|163756828|ref|ZP_02163937.1| peptide deformylase [Kordia algicida OT-1]
 gi|161323217|gb|EDP94557.1| peptide deformylase [Kordia algicida OT-1]
          Length = 196

 Score =  196 bits (499), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 72/180 (40%), Positives = 103/180 (57%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V F DP+LR+V++ I     ++  L++NM E MY+  G+GLAA Q+G+  RL +I
Sbjct: 1   MILPIVAFGDPVLRKVAKDITPDYPNLDTLLENMFETMYNAYGVGLAAPQVGLPIRLFMI 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A  +               VFIN KII  + +  V+ EGCLSIPD R DV R   
Sbjct: 61  DATGFAEDEELDEEQRKQLEGMKKVFINAKIIERNGEPWVFNEGCLSIPDIREDVFRPES 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + YMD N +  +   DGL A  +QHE DH+ GILF D LS LKR ++  +++ + + R
Sbjct: 121 IKIEYMDENFEKHVEEYDGLAARVIQHEYDHIEGILFTDKLSALKRRLLKGRLTNISRGR 180


>gi|68171578|ref|ZP_00544952.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658603|ref|YP_506903.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas]
 gi|67999004|gb|EAM85681.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88600060|gb|ABD45529.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas]
          Length = 188

 Score =  196 bits (499), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 69/181 (38%), Positives = 99/181 (54%), Gaps = 17/181 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L   S  +EK++  I  L+D+M E M++  G+GLAAVQ+GV  R++V
Sbjct: 1   MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILV 60

Query: 61  IDLQDHAH-----------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           +++ +                       P   INPKI+  S +    +EGCLS+P Y   
Sbjct: 61  MNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDY 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + R   I V+Y+D N    II A G LA CLQHE+DHLNG +F+ +LS+ KRD   +K+ 
Sbjct: 121 IVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVK 180

Query: 164 K 164
           K
Sbjct: 181 K 181


>gi|220912431|ref|YP_002487740.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
 gi|219859309|gb|ACL39651.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
          Length = 204

 Score =  196 bits (499), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA QIGV  R+  
Sbjct: 1   MAILNIRIIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQIGVSKRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP +    D    + EGCLSIP     V+R     V  +D +  
Sbjct: 61  YRIDGVEG-----HIINPVLENSDDYQPDHVEGCLSIPGLGFPVRRFRATRVTGVDMHGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +  +G+LA C QHE DHL+G+L+ D L    R    + + 
Sbjct: 116 PVSLEGEGMLARCFQHENDHLDGVLYTDRLEGEDRKAALRSIR 158


>gi|239617141|ref|YP_002940463.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1]
 gi|239505972|gb|ACR79459.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1]
          Length = 164

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 5/164 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V   +P+LR  S  I+K + ++   +  +  +MY  DG+GLAA Q+ VL R+ V D   
Sbjct: 3   IVYIGNPVLREKSEAIKKFDDNLKTFVKELTSIMYKEDGVGLAAPQVAVLKRMFVFD--- 59

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P V INP+I+  S +  + +EGCLSIP   ADV+R  ++ +RY D +       
Sbjct: 60  --DGSGPKVIINPEILEKSKELVIMEEGCLSIPGVYADVERPEWVKMRYQDVDGNVHEEL 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +G     +QHE DHLNGILFID+LS  K+ MI  K+ ++++ +
Sbjct: 118 FEGYAGRIVQHEYDHLNGILFIDYLSPAKKMMIRPKLREIMKGK 161


>gi|154490274|ref|ZP_02030535.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC
           43184]
 gi|154089166|gb|EDN88210.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC
           43184]
          Length = 185

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 5/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  +     D+  L+ NM E MY+ DG+GLAA Q+G+  RL+VI
Sbjct: 1   MILPVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVI 60

Query: 62  DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D           +      INP  +  S++    +EGCLS+P     V RSA + V+Y+D
Sbjct: 61  DADVMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSAKVRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +      +G  A  +QHE +HL G +FID++S ++R +   K++ +++ 
Sbjct: 121 EDLKEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIKG 172


>gi|27367269|ref|NP_762796.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|320159078|ref|YP_004191456.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
 gi|31076649|sp|Q8D5P5|DEF2_VIBVU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|27358838|gb|AAO07786.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|319934390|gb|ADV89253.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
          Length = 168

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++LE +Y T +G+GLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKEVTDV-AAVQTLIDDLLETLYETDNGVGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +  +R  P+V +NPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D + 
Sbjct: 60  VIDLSE--NRDEPLVLVNPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K  +LR
Sbjct: 117 KPLRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166


>gi|29345830|ref|NP_809333.1| peptide deformylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253567816|ref|ZP_04845227.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6]
 gi|298384715|ref|ZP_06994275.1| peptide deformylase [Bacteroides sp. 1_1_14]
 gi|39930885|sp|Q8AAP4|DEF_BACTN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|29337723|gb|AAO75527.1| peptide deformylase(PDF) [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841889|gb|EES69969.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6]
 gi|298262994|gb|EFI05858.1| peptide deformylase [Bacteroides sp. 1_1_14]
          Length = 184

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPEYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +      +     +INP II    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEDYPEFKDFNKAYINPHIIEVGGEEVSMEEGCLSLPGIHESVKRGNKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 ENFVEHDEVVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIRGKLNTMLKGK 173


>gi|269119796|ref|YP_003307973.1| peptide deformylase [Sebaldella termitidis ATCC 33386]
 gi|268613674|gb|ACZ08042.1| peptide deformylase [Sebaldella termitidis ATCC 33386]
          Length = 162

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 96/165 (58%), Gaps = 5/165 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ + +P+LR VS+ + +I  +I  ++D M+E M    G+GLAA Q+G+  R  V ++  
Sbjct: 3   IIYYGNPVLREVSKEVTEITDEIRQILDEMVETMREESGVGLAANQVGLTQRFFVGEVDG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +  +      INP+II F  +    +EGCLSIP     VKR   I VRY +   +     
Sbjct: 63  NVKK-----IINPEIIEFGKEEIELEEGCLSIPGIYKRVKRPEKIKVRYQNEKGETVEEE 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + + A   QHELDHL+GILFID +S L + +I+K+++++ +  +
Sbjct: 118 LNEVWARVFQHELDHLDGILFIDKISPLNKRLISKRLAQIKKEGN 162


>gi|157826975|ref|YP_001496039.1| peptide deformylase [Rickettsia bellii OSU 85-389]
 gi|157802279|gb|ABV79002.1| peptide deformylase [Rickettsia bellii OSU 85-389]
          Length = 175

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 71/172 (41%), Positives = 112/172 (65%), Gaps = 5/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+ + ++N+ I   +D+M+E MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   K P     +  +NP+II  S++  +  EGC+S+P+ R ++ RS  I +RY+
Sbjct: 61  IDIKDHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D + + Q + A+  LA  +QHE DHL G L ID+LS +KR++  +K+ KL +
Sbjct: 121 DYHNKPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRNIALRKLRKLKK 172


>gi|88855001|ref|ZP_01129666.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
 gi|88815529|gb|EAR25386.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
          Length = 205

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++I  DP+L   + P+   +S +  L+ +M E M    G+GLAA Q+GV  R+ V
Sbjct: 19  MAVLPIIITGDPVLHTPANPVTAFDSSLNTLVSDMFETMEEAPGVGLAAPQVGVPLRVFV 78

Query: 61  IDLQDHAHRKNPMVFINPKI----ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            D  D        V INP++        +     +EGCLSIP  R  + R+  + +R +D
Sbjct: 79  YDWIDDDDAHWRGVAINPELWHTPTPVYEPGEADEEGCLSIPGERFGLVRAERVILRAVD 138

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + +   I A G LA   QHE DHL+G+L+ D L
Sbjct: 139 LDQKPFEIEASGWLARIFQHEYDHLDGVLYADRL 172


>gi|255692008|ref|ZP_05415683.1| peptide deformylase [Bacteroides finegoldii DSM 17565]
 gi|260622254|gb|EEX45125.1| peptide deformylase [Bacteroides finegoldii DSM 17565]
          Length = 184

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +      +     +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEDYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEYEEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|330445859|ref|ZP_08309511.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490050|dbj|GAA04008.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 173

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 108/172 (62%), Gaps = 5/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M    ++  P+P LR  +  +  + ++ I  LID+ML+ MY T +GIGLAA Q+G    +
Sbjct: 1   MAVLEILTEPNPKLRVQAEEVTDVKAEHIQTLIDDMLQTMYETGNGIGLAAPQVGRKESI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VIDL +   R  P VF+NPKI+   ++  V QEGCLS+PDY ADV+R   I +  +D +
Sbjct: 61  IVIDLSE--ERNEPQVFVNPKIV-RGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                +  D  LA  LQHE+DHL GILFID+LS LKR M  KK+ K +++++
Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKYLKMQE 169


>gi|294628122|ref|ZP_06706682.1| peptide deformylase [Streptomyces sp. e14]
 gi|292831455|gb|EFF89804.1| peptide deformylase [Streptomyces sp. e14]
          Length = 213

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 83/167 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  D  L    R + +   ++  L++++   MY+  G+GLAA Q+G+  R+ V D
Sbjct: 38  VRPLTLLGDAALAAPCREVTEFGPELAALVEDLFATMYAARGVGLAANQVGLDLRVFVYD 97

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A V+R     V       +  
Sbjct: 98  CPDDEDVRHLGHLVNPRLVAADGLLFRGPEGCLSLPGLEAGVERHDHAVVEGFTVAGEPV 157

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   G  A CLQHE DHL+G L++DHL+  +R  + ++ ++    R
Sbjct: 158 TVEGTGFFARCLQHECDHLDGRLYVDHLTGWRRRKVLRQAARAPWNR 204


>gi|213965569|ref|ZP_03393763.1| peptide deformylase [Corynebacterium amycolatum SK46]
 gi|213951728|gb|EEB63116.1| peptide deformylase [Corynebacterium amycolatum SK46]
          Length = 167

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+L   +  +   ++ + +LID+M + M    G+GLAA Q+GVL R+ V
Sbjct: 1   MAVREVRLFGDPVLLSKAETVTDFDATLSHLIDDMFDTMDEQQGVGLAANQVGVLQRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             +NP+     D+     EGCLSIP     V R A + V   D +  
Sbjct: 61  YDCNGTRG-----HIVNPEWEAIGDETVHEIEGCLSIPGINGPVTRHARVRVTGQDRHGT 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                AD LLA C+QHE DHL+G+LF+  L   +R    + + +
Sbjct: 116 PVSFEADDLLARCVQHESDHLDGVLFLKRLEGDERKTAMRSLRE 159


>gi|51473406|ref|YP_067163.1| peptide deformylase [Rickettsia typhi str. Wilmington]
 gi|81692314|sp|Q68XG1|DEF_RICTY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|51459718|gb|AAU03681.1| PDF [Rickettsia typhi str. Wilmington]
          Length = 175

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L++ S+P+ +        + +MLE MY+ +G GLAAVQ+GVL R++V
Sbjct: 1   MSIYSIVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNANGAGLAAVQVGVLQRILV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++ H   + P     +  +NP+II  S +     EGC+S+P+ R +V R   + +RY+
Sbjct: 61  IDIKAHDPVERPKDFYPLFIVNPEIIEQSTELVTANEGCISLPEQRIEVMRPESVKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + Q + A+  LA  +QHE DHL G L +D+LS LKRD++ +K+ KL
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKL 170


>gi|240113996|ref|ZP_04728486.1| peptide deformylase [Neisseria gonorrhoeae MS11]
 gi|240122199|ref|ZP_04735161.1| peptide deformylase [Neisseria gonorrhoeae PID24-1]
 gi|240124639|ref|ZP_04737525.1| peptide deformylase [Neisseria gonorrhoeae SK-92-679]
 gi|254494753|ref|ZP_05107924.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
 gi|268600061|ref|ZP_06134228.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
 gi|268683213|ref|ZP_06150075.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
 gi|226513793|gb|EEH63138.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
 gi|268584192|gb|EEZ48868.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
 gi|268623497|gb|EEZ55897.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
          Length = 161

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 3/160 (1%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
            +PD  L  V++P+E+++  I  L+ +M E MY + GIGLAA Q+ V  R+VV+DL +  
Sbjct: 2   QYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVVMDLTE-- 59

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R  P VFINP I+    +   Y+EGCLS+P     V R+  + V  ++   +   + AD
Sbjct: 60  DRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKFTLEAD 118

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           GLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 119 GLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 158


>gi|15600920|ref|NP_232550.1| peptide deformylase [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|121587986|ref|ZP_01677739.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121729670|ref|ZP_01682131.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|147672038|ref|YP_001215964.1| peptide deformylase [Vibrio cholerae O395]
 gi|153819711|ref|ZP_01972378.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|153822662|ref|ZP_01975329.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|153825061|ref|ZP_01977728.1| peptide deformylase [Vibrio cholerae MZO-2]
 gi|153830707|ref|ZP_01983374.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|227811776|ref|YP_002811786.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|229506685|ref|ZP_04396194.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229510520|ref|ZP_04400000.1| peptide deformylase [Vibrio cholerae B33]
 gi|229517348|ref|ZP_04406793.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229527868|ref|ZP_04417259.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229605159|ref|YP_002875863.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|254850416|ref|ZP_05239766.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|297579720|ref|ZP_06941647.1| polypeptide deformylase [Vibrio cholerae RC385]
 gi|298500007|ref|ZP_07009813.1| peptide deformylase [Vibrio cholerae MAK 757]
 gi|23396575|sp|Q9KN16|DEF2_VIBCH RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|9657539|gb|AAF96063.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547784|gb|EAX57873.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121628568|gb|EAX61048.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|126509754|gb|EAZ72348.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|126519819|gb|EAZ77042.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|146314421|gb|ABQ18961.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|148873804|gb|EDL71939.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|149741386|gb|EDM55420.1| peptide deformylase [Vibrio cholerae MZO-2]
 gi|227010918|gb|ACP07129.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|227014777|gb|ACP10986.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|229334230|gb|EEN99715.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229345384|gb|EEO10357.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229352965|gb|EEO17905.1| peptide deformylase [Vibrio cholerae B33]
 gi|229357036|gb|EEO21954.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229371645|gb|ACQ62067.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|254846121|gb|EET24535.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|297535366|gb|EFH74200.1| polypeptide deformylase [Vibrio cholerae RC385]
 gi|297541988|gb|EFH78039.1| peptide deformylase [Vibrio cholerae MAK 757]
          Length = 168

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y+T +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D  +R  P+V INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSD--NRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|148272776|ref|YP_001222337.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830706|emb|CAN01646.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 188

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R +E  + D+  L+ +M + M    G+GLAA Q+GV  R+ V
Sbjct: 1   MAVLPIRITGDPVLHAPAREVEAFDDDLRTLVADMFDTMDEAPGVGLAAPQVGVPLRVFV 60

Query: 61  IDLQDHAHRK------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
              +            NP +FI P  +  +D+    +EGCLS P  R  + R+    +R 
Sbjct: 61  YSYETDEGEPLRGVAVNPDLFITPVAVREADE-DTEEEGCLSFPGERFPLVRADRAILRA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D + +   I A G  A  LQHE DHL+G+L+ D L+ + R  + K + K
Sbjct: 120 VDLDGRPFEIQAAGWFARILQHEFDHLDGLLYTDRLAHVHRKPVAKVIRK 169


>gi|37676994|ref|NP_937390.1| peptide deformylase [Vibrio vulnificus YJ016]
 gi|39930924|sp|Q7MCQ2|DEF1_VIBVY RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|37201538|dbj|BAC97360.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016]
          Length = 168

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++LE +Y T +G+GLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKEVTDV-AAVQTLIDDLLETLYETDNGVGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +  +R  P+V +NPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D N 
Sbjct: 60  VIDLSE--NRDEPLVLVNPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDRNG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K  +LR
Sbjct: 117 KELRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166


>gi|296117966|ref|ZP_06836549.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969197|gb|EFG82439.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 169

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K + ++ DP+L   +  I + +  +  L ++MLE M    G+GLAA QIG+L R+ V
Sbjct: 1   MTVKAIRLYGDPVLTTRAGEITEFDESLEKLAEDMLETMDDAGGVGLAANQIGLLKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             INP      D   V  EGCLSIPD     +R   ++V   D +  
Sbjct: 61  YDCS-SVETGMRGAIINPVWEAVGDKTQVGNEGCLSIPDISMPTERFETVSVSGQDVHGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +   GL+A C+QHE DHL+G+LF+  L    R     ++ 
Sbjct: 120 PVSMVVSGLMARCVQHETDHLDGVLFLQRLETDDRKQAMAQIR 162


>gi|258515528|ref|YP_003191750.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779233|gb|ACV63127.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
          Length = 164

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   DP+LR+ + P++ INS I  L+ NM + MY   G+GLAA QIG+  R+VV
Sbjct: 1   MAIYNIVEVGDPVLRQKANPVKNINSSIHKLLKNMADTMYDAKGVGLAAPQIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +       +  INP+II  S       EGCLSIP     V R++ I V+ ++ N +
Sbjct: 61  VDIGE-----GLLELINPRIIKASG-QETDTEGCLSIPGTLGQVPRASKIQVQALNRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               +  G +A  +QHELDHL+GILFID    L++      +    + +
Sbjct: 115 QVEYHVKGFMARAVQHELDHLDGILFIDKAESLRKQFEDVVLENKAKAK 163


>gi|153802627|ref|ZP_01957213.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|124121843|gb|EAY40586.1| polypeptide deformylase [Vibrio cholerae MZO-3]
          Length = 168

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y+T +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D  +R  P+V INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSD--NRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|258541770|ref|YP_003187203.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632848|dbj|BAH98823.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635905|dbj|BAI01874.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256638960|dbj|BAI04922.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642014|dbj|BAI07969.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645069|dbj|BAI11017.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648124|dbj|BAI14065.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651177|dbj|BAI17111.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654168|dbj|BAI20095.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 186

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 113/169 (66%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               ++  P P+LR+ +R ++  + ++I  ++ NM   MY   GIGLAA Q+G+  R ++
Sbjct: 19  APLQILTPPHPVLRQKARLVKPEDVAEIRKILPNMFSAMYQAPGIGLAAPQVGLSQRFIL 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R +P+V INP++I  ++D +V +EGCLS+P+  A+V R   I VR+ + N  
Sbjct: 79  VDLGEKDAR-DPIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNVNGD 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K ++ +
Sbjct: 138 VVEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAKELKRK 186


>gi|311739504|ref|ZP_07713339.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305320|gb|EFQ81388.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 170

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L I+ DP+L   +  I K ++ +  L  +MLE M    G+GLAA Q+G+L R+ V
Sbjct: 1   MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDKAGGVGLAANQVGILQRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   H         +NP      +      EGCLSIP   A+  R   + V   D   +
Sbjct: 61  YDCS-HTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GL+A C+QHE DHL+G+LF+  L    R    + + +
Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRLEAPVRKEAMRAIRE 163


>gi|42524171|ref|NP_969551.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100]
 gi|39576379|emb|CAE80544.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100]
          Length = 201

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 106/179 (59%), Gaps = 17/179 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ FPDP LR VS+P++    +I  L ++M+E MY  +GIGLAA Q+G L R+VVI
Sbjct: 1   MIMKILTFPDPKLREVSQPVKTFGPEIAKLAEDMVETMYHANGIGLAAPQVGELVRMVVI 60

Query: 62  DLQDHAHR----------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           D +    +                K P++ INP+I+   +  + + EGCLSIP Y   V+
Sbjct: 61  DTRPKDEKGRRYKYEEMTELEAAVKQPLILINPEIV-KGEGKTTFDEGCLSIPGYYETVE 119

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           R  +I ++  D N +  I+  DGLLA C+QHE+DHL G LFIDHLS +K + I  ++ K
Sbjct: 120 RYNYIEMKAFDVNGKEYIVKTDGLLAICMQHEMDHLEGTLFIDHLSFVKGNKIKNQIKK 178


>gi|157363555|ref|YP_001470322.1| peptide deformylase [Thermotoga lettingae TMO]
 gi|167012066|sp|A8F524|DEF_THELT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157314159|gb|ABV33258.1| peptide deformylase [Thermotoga lettingae TMO]
          Length = 171

 Score =  195 bits (497), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K + +  DP+LR+ S+ +E+++   ++LI ++ E MY+TDGIGLAA QIGV  R+ V+
Sbjct: 1   MVKKIRLLGDPVLRKKSKNVERVDETTISLIKDLFETMYATDGIGLAAPQIGVSLRIFVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D         P VFINP+II  S++  + +EGCLS+P+   DV+RS  +TVRYM+ + + 
Sbjct: 61  D------DGKPRVFINPEIIYKSEEKEIAEEGCLSVPEVFEDVERSKEVTVRYMNEHGEE 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                    A  +QHE DHL G+LFID +   +R  I KK+ ++V+ 
Sbjct: 115 VEESFVDYSARVVQHEYDHLQGVLFIDLIPSSRRFAIRKKLIEIVRQ 161


>gi|126209175|ref|YP_001054400.1| peptide deformylase [Actinobacillus pleuropneumoniae L20]
 gi|165977146|ref|YP_001652739.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|126097967|gb|ABN74795.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
 gi|165877247|gb|ABY70295.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 154

 Score =  195 bits (497), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 100/153 (65%), Gaps = 3/153 (1%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77
             P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ ID++    + N +V IN
Sbjct: 2   CEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVITIDIE--GDKTNQVVLIN 59

Query: 78  PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137
           P+I+    +  + +EGCLSIP +RA V R   + V+ ++   +  I  ADGL A C+QHE
Sbjct: 60  PEILESCGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRKGEEVIYEADGLFAICIQHE 118

Query: 138 LDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +DHLNG+LF+DH+S LKR  I +KM KL +  +
Sbjct: 119 IDHLNGVLFVDHISALKRQRIKEKMQKLKKQIE 151


>gi|229514651|ref|ZP_04404112.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229348631|gb|EEO13589.1| peptide deformylase [Vibrio cholerae TMA 21]
          Length = 168

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y+T +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D  +R  P+V INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSD--NRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLCIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|182420425|ref|ZP_02951645.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237667734|ref|ZP_04527718.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375711|gb|EDT73311.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237656082|gb|EEP53638.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 146

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+  R +E+I+  ++ LI +MLE MY  DG+GLAA Q+G+L RL V
Sbjct: 1   MALRNIRKYGDDVLRKECREVEEIDKRLLVLIKDMLETMYDADGVGLAAPQVGILKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D      P+VFINP+II  S    + +EGCLS+P    +V R  ++  R ++   Q
Sbjct: 61  IDIGD-----GPLVFINPEIIETSG-KQIDEEGCLSLPGKMEEVMRPNYVRARALNEKGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A+ LLA  + HE DHLNG LFID +++
Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRVNK 146


>gi|254453655|ref|ZP_05067092.1| peptide deformylase [Octadecabacter antarcticus 238]
 gi|198268061|gb|EDY92331.1| peptide deformylase [Octadecabacter antarcticus 238]
          Length = 159

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/152 (48%), Positives = 102/152 (67%), Gaps = 1/152 (0%)

Query: 18  SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMVFI 76
           + P+  ++  +  L D+MLE MY   GIGLAA Q+G++ R++V+D  +D      PMV I
Sbjct: 2   ADPVATVDKTLHALADDMLETMYDAPGIGLAAPQLGIMQRMLVMDCIKDDMETPQPMVLI 61

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP++I  S + ++Y EGCLSIP+  A+V+RSA + V +MD N + Q      L ATC+QH
Sbjct: 62  NPRVIAASSETNIYDEGCLSIPEQYAEVERSAVVKVEWMDLNGKTQQDEFSDLWATCVQH 121

Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           E+DHLNG LFID+L  LKR MIT+KM KL + 
Sbjct: 122 EIDHLNGKLFIDYLKPLKRQMITRKMQKLKRE 153


>gi|254881558|ref|ZP_05254268.1| peptide deformylase [Bacteroides sp. 4_3_47FAA]
 gi|254834351|gb|EET14660.1| peptide deformylase [Bacteroides sp. 4_3_47FAA]
          Length = 184

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +      +     +INP I+    +    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  DLDVMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                   + +G LA  +QHE DHL+G +FIDHLS L++ MI  K+  +++ +
Sbjct: 121 EELNEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173


>gi|218259650|ref|ZP_03475313.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224966|gb|EEC97616.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii
           DSM 18315]
          Length = 185

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 5/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  +     D+  L+ NM E MY+ DG+GLAA Q+G+  RL+VI
Sbjct: 1   MILPVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVI 60

Query: 62  DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D           +      INP  +  S++    +EGCLS+P     V RS  + V+Y+D
Sbjct: 61  DADVMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSVKVRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +      +G  A  +QHE +HL G +FID++S ++R +   K++ +++ 
Sbjct: 121 EDLKEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIKG 172


>gi|320162554|ref|YP_004175779.1| peptide deformylase [Anaerolinea thermophila UNI-1]
 gi|319996408|dbj|BAJ65179.1| peptide deformylase [Anaerolinea thermophila UNI-1]
          Length = 171

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LRR ++ +   + D+  LID+M+E M +  G+GLAA Q+GV  R++V
Sbjct: 1   MAVRTIVTVPDPVLRRKAKKVTTFDKDLQVLIDDMIETMRAAPGVGLAAPQVGVSQRVIV 60

Query: 61  IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ++  +         K     +NP+I+  S +     EGCLSIP    +V+R   I V+ +
Sbjct: 61  VEYGEGEEEDENVPKKLYAVVNPEIVEASPERVTGVEGCLSIPRMMGEVERHERIVVKGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +   +       G  A   QHE+DHL GIL+ D  + +
Sbjct: 121 NRYGKPVKYKLSGWTARIFQHEIDHLEGILYTDRATSV 158


>gi|170726943|ref|YP_001760969.1| peptide deformylase [Shewanella woodyi ATCC 51908]
 gi|169812290|gb|ACA86874.1| peptide deformylase [Shewanella woodyi ATCC 51908]
          Length = 163

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/167 (44%), Positives = 102/167 (61%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P+  I S +   ID++LE MY TD GIGLAA Q+G  + ++
Sbjct: 1   MAVLDILTIPDERLKRKAKPVTDI-SAVQGFIDDLLETMYHTDDGIGLAATQVGSEHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL     R  P V INP+I+    +F V +EGCLSIP YRA V R+  + V  +D   
Sbjct: 60  VIDLSP--ERDQPQVLINPEIVAAEGEF-VGEEGCLSIPGYRAKVARNEKVKVTALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               I  D  LA  LQHE+DHLNG++F DHLS+LK+ +  +K+SK  
Sbjct: 117 TPFEIETDTFLAIVLQHEMDHLNGVVFTDHLSKLKQQIALRKVSKYA 163


>gi|281423116|ref|ZP_06254029.1| peptide deformylase [Prevotella oris F0302]
 gi|281402452|gb|EFB33283.1| peptide deformylase [Prevotella oris F0302]
          Length = 187

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V++ I      +  LI +M E + +++GIGLAA QIG   R+VVI
Sbjct: 1   MILPIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVI 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL         ++     FIN  I+ F ++      +EGCLS+P     V R   I V+Y
Sbjct: 61  DLDVLSDDYPEYKGLRKAFINAHILEFDEESPKETMEEGCLSLPGLSEKVTRPTRIHVKY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D +      + DG LA  +QHE DHL G +FID +  L++ MI  K+  +++ +
Sbjct: 121 QDEDFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMKGK 175


>gi|332521217|ref|ZP_08397675.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4]
 gi|332043310|gb|EGI79507.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4]
          Length = 196

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L+  ++ I+K   ++  LI NM E M+   G+GLAA QIG+  R+ ++
Sbjct: 1   MVLPIVAYGDPVLKVKAKEIDKDYPNLKELITNMQETMHGAYGVGLAAPQIGLPIRMFLV 60

Query: 62  DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A             +     FINP I+  S D   + EGCLSIPD R DV R   
Sbjct: 61  DASPFADDDVLEDDERAFLKNFKHTFINPTILEESGDEWAFNEGCLSIPDVREDVFRKPN 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I V Y D + +   +   GL A   QHE DH+ GILF D LS LK+ +I  K+  + + +
Sbjct: 121 IKVEYFDEDFKKHTMELSGLAARVFQHEYDHIEGILFTDKLSSLKKRLIKGKLLNISKGK 180


>gi|302389590|ref|YP_003825411.1| peptide deformylase [Thermosediminibacter oceani DSM 16646]
 gi|302200218|gb|ADL07788.1| peptide deformylase [Thermosediminibacter oceani DSM 16646]
          Length = 155

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ S+ +   +  +  L+ +M E M   +G+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRQYGDEVLRKKSKKVTVFDEKLKQLLADMAETMRHANGVGLAAPQVGILKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II+   +     EGCLSIP    +V R   + VR  +   +
Sbjct: 61  IDVGE-----GLIELINPEIISKEGEVVEI-EGCLSIPGITGEVPRPQKVRVRAQNPEGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I  + LLA  L HE+DHL+GILFID   R+
Sbjct: 115 FVEIEGEDLLARALCHEIDHLDGILFIDKAKRI 147


>gi|325963040|ref|YP_004240946.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469127|gb|ADX72812.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 194

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA Q+GV  R+  
Sbjct: 1   MAILNIRIIGDPVLRTVAEPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP +    D      EGCLSIP     V+R     V  +D N  
Sbjct: 61  YRIDGVEG-----HIINPVLENSDDFQQDQVEGCLSIPGLGFPVRRYRSTRVTGVDMNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +  +GLLA C QHE DHL+GIL+ D L    R    + + 
Sbjct: 116 PVTVEGEGLLARCFQHENDHLDGILYTDRLEGEDRKSALRSIR 158


>gi|260655752|ref|ZP_05861221.1| peptide deformylase [Jonquetella anthropi E3_33 E1]
 gi|260629368|gb|EEX47562.1| peptide deformylase [Jonquetella anthropi E3_33 E1]
          Length = 162

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 4/157 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + ++PDP+LR+ + P+   +  +  L+++M  +M+  DG+GLAA QIG+  ++ V+   +
Sbjct: 7   IRVYPDPVLRQPTEPVTVFDEALRRLLEDMAVIMHEADGVGLAAPQIGIAKKIAVVYDAE 66

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H  +    INP++I  S      +EGCLS P     VKR   +TVR  D +   Q   
Sbjct: 67  TDHLYH---LINPEVIASSGG-QTGEEGCLSFPGIFGQVKRPLKVTVRCQDGDGNLQEYT 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           A G +A    HE+DHLNG L ID+ S LKR+++ KKM
Sbjct: 123 AQGFIARAFTHEIDHLNGRLLIDNFSPLKRNLVLKKM 159


>gi|212691280|ref|ZP_03299408.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855]
 gi|237712291|ref|ZP_04542772.1| peptide deformylase [Bacteroides sp. 9_1_42FAA]
 gi|237726430|ref|ZP_04556911.1| peptide deformylase [Bacteroides sp. D4]
 gi|265751999|ref|ZP_06087792.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA]
 gi|212666512|gb|EEB27084.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855]
 gi|229434956|gb|EEO45033.1| peptide deformylase [Bacteroides dorei 5_1_36/D4]
 gi|229453612|gb|EEO59333.1| peptide deformylase [Bacteroides sp. 9_1_42FAA]
 gi|263236791|gb|EEZ22261.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA]
          Length = 184

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +      +     +INP I+    +    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  DLDVMSDELPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +    + +G LA  +QHE DHL+G +FIDHLS L++ MI  K+  +++ +
Sbjct: 121 EELKEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173


>gi|319788404|ref|YP_004147879.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466916|gb|ADV28648.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
          Length = 180

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 1/171 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++   DP+LR+ S  IE I+  + +L+ +MLE M   DG GLAAVQIG L R++V
Sbjct: 1   MAIRPILPITDPLLRQKSAEIETIDDSVRDLVSDMLETMQDADGAGLAAVQIGELRRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNA 119
            D+       +  VFINP+II  SD+    + EGCLS+P+    V R+  + VR+ D +A
Sbjct: 61  ADIPLDEPHASHKVFINPEIIWQSDEIQELEGEGCLSMPEIYFTVPRALEVKVRFTDLDA 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               ++A+G  A C QHE+DHLNGI  IDH+S LKRD    K  K +++ +
Sbjct: 121 VTHEVHAEGFSAVCFQHEIDHLNGIRQIDHVSSLKRDKFLAKFRKYLRIDE 171


>gi|332878465|ref|ZP_08446186.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683560|gb|EGJ56436.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 185

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/173 (38%), Positives = 100/173 (57%), Gaps = 6/173 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  F  P+LR+V+  I     ++  LIDNM E +  ++GIGLAA QIG+  RLVVI
Sbjct: 1   MVLPIYTFGQPVLRKVAEDITPDYPELKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVI 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +L         ++     FINP I+ + D +    +EGCLS+P     V+R   I V Y+
Sbjct: 61  NLDLISDDLPEYKGFVHAFINPHILEYDDTETDSMEEGCLSLPGIHEPVRRPTRIRVSYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + Q    + +G LA  +QHE DHL+G +F+DHLS L++ M+  K+  L++ 
Sbjct: 121 DEDFQPHDEWVEGYLARVMQHEFDHLDGKMFVDHLSMLRKQMVKGKLGNLLKG 173


>gi|134098682|ref|YP_001104343.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003631|ref|ZP_06561604.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911305|emb|CAM01418.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 182

 Score =  194 bits (495), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   + ++ NL+ ++ + M    G G+AA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTRAEEVVDFDKELRNLVQDLWDTMEDQGGAGIAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                 A        +NP      ++     EGCLSIP    D +R   +  R  + + +
Sbjct: 61  YHCDGFAG-----HLVNPTFTAVDEELQFGPEGCLSIPGMSWDCERYRNVVARGWNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I    LLA C+QHE DHL+G+LF+D L    R    +++ 
Sbjct: 116 PVEIEGTDLLARCIQHETDHLDGVLFVDRLDEQTRKAAMREIR 158


>gi|257063703|ref|YP_003143375.1| peptide deformylase [Slackia heliotrinireducens DSM 20476]
 gi|256791356|gb|ACV22026.1| peptide deformylase [Slackia heliotrinireducens DSM 20476]
          Length = 180

 Score =  194 bits (495), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/163 (38%), Positives = 86/163 (52%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +PDP LR V  P +  +  +  L   M   MY+ +G GLAA Q+GV  R++VID  
Sbjct: 7   PVVTYPDPTLREVCVPCDPSDKSLKKLARQMANTMYANNGCGLAAPQVGVNKRIIVIDCD 66

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +  +NP+  +NP+II       +  EGCLS P    +++R  +  V+Y D N +  II
Sbjct: 67  QDSGTRNPITLLNPEIIETRGPEELDGEGCLSCPGITVEIRRPTYAIVKYTDLNGEDWII 126

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             DGLL  CLQHE+DHLNGI   +      R    K      Q
Sbjct: 127 EGDGLLGRCLQHEIDHLNGITLFESCDMNARIKALKDYKAAQQ 169


>gi|305664803|ref|YP_003861090.1| peptide deformylase [Maribacter sp. HTCC2170]
 gi|88707925|gb|EAR00164.1| peptide deformylase [Maribacter sp. HTCC2170]
          Length = 196

 Score =  194 bits (495), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/180 (38%), Positives = 102/180 (56%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+V + IEK    +  LI+NM E MY+  G+GLAA QIG+  RL ++
Sbjct: 1   MVLPIVAYGDPVLRKVGKEIEKNLPKLDELIENMWETMYNASGVGLAAPQIGLPVRLFLV 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A                  VFIN K+   + +  V+ EGCLSIP+ R DV R   
Sbjct: 61  DATPFAEDDELSEKERKDLDGFKKVFINAKMQEETGEDWVFNEGCLSIPEIREDVTRKDT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D N + Q    DG+LA  +QHE DH+ GILF D LS LK+ ++  +++ + + +
Sbjct: 121 ITITYFDENFKKQTENFDGILARIIQHEYDHIEGILFTDKLSSLKKRLLKGRLANISKGK 180


>gi|302671348|ref|YP_003831308.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316]
 gi|302395821|gb|ADL34726.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316]
          Length = 163

 Score =  194 bits (495), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +  + +++I   I  L+++MLE MY  +G+GLAA Q+G+L R+ V
Sbjct: 1   MALRTIREIGDDVLVKNCKEVKEITPRIKELVEDMLETMYEANGVGLAAPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      ++PMVFINP+I+  S +     EGCLS+P     V R+ ++  +  D +  
Sbjct: 61  IDVTG----EDPMVFINPEILETSGE-QTGYEGCLSVPGKSGIVTRANYVKAKATDLDGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             II  + LLA  +QHE DHLNG +++D + 
Sbjct: 116 EFIIEGEELLARAIQHENDHLNGKMYVDKVE 146


>gi|257466485|ref|ZP_05630796.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917642|ref|ZP_07913882.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691517|gb|EFS28352.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 173

 Score =  194 bits (495), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR+V+  +E IN +I  ++ NMLE MY+TDG+GLAA Q+G+  R+ V 
Sbjct: 1   MIYEIRKYGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMFVC 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+      +   + INP I   +++    +EGCLS+P     V R A I + Y +   + 
Sbjct: 61  DVGTPEESQVKKI-INPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEK 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL   LF+D +S + + MI KK+  L + 
Sbjct: 120 IEEILEGFPAIVVQHEYDHLEATLFVDRISPMAKRMIAKKLQALKKE 166


>gi|257452629|ref|ZP_05617928.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
 gi|317059168|ref|ZP_07923653.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
 gi|313684844|gb|EFS21679.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
          Length = 173

 Score =  194 bits (495), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR+V+  +E IN +I  ++ NMLE MY+TDG+GLAA Q+G+  R+ V 
Sbjct: 1   MIYEIRKYGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMFVC 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+      +   + INP I   +++    +EGCLS+P     V R A I + Y +   + 
Sbjct: 61  DVGTPEESQVKKI-INPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEK 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL   LF+D +S + + MI KK+  L + 
Sbjct: 120 IEEILEGFPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQALKKE 166


>gi|254460696|ref|ZP_05074112.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
 gi|206677285|gb|EDZ41772.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 166

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 88/166 (53%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L+     +E I  +I  L+ +M E MY+  G GLAA Q+GV+ RL V
Sbjct: 1   MSVLPIITWPDVRLQTECAAVEAIGPEIEQLVGDMFETMYTAPGRGLAASQVGVMRRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D        NP+V INP I+  SD  S  +E CLSI    ADV R   I + Y   N +
Sbjct: 61  MDATWKEGDMNPLVCINPSIVPLSDARSTNEEACLSIVGVSADVSRPNEIELSYTGLNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                 +G  A C QHE+DHL+G +  DHL   +R  +  K  +++
Sbjct: 121 RVTAVIEGFAAVCAQHEMDHLDGRVIFDHLGAPERAALEAKYKEII 166


>gi|302561940|ref|ZP_07314282.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000]
 gi|302479558|gb|EFL42651.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000]
          Length = 184

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 77/167 (46%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L    R +     ++  L+D++   MY   G+GLAA Q+G   R+ V D
Sbjct: 16  VRPLTLLGDPVLHAPCREVTDFGPELARLVDDLFATMYEARGVGLAANQVGEPLRVFVYD 75

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+ +          EGCLS+P   A  +R     V       +  
Sbjct: 76  CPDDEDVRHLGHVVNPRPVVTDGVVVRGPEGCLSLPGLEAGTERYDHAVVEGFTVTGEPV 135

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            ++  G  A CLQHE DHL+G ++ D L+  +   + ++  +    R
Sbjct: 136 TVHGTGFFARCLQHECDHLDGRIYADRLTGWRHRRLMRQADRASWNR 182


>gi|75907053|ref|YP_321349.1| peptide deformylase [Anabaena variabilis ATCC 29413]
 gi|75700778|gb|ABA20454.1| peptide deformylase [Anabaena variabilis ATCC 29413]
          Length = 187

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/143 (44%), Positives = 88/143 (61%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I K++ +   LI +ML+ MYS DGIGLAA Q+G+  +L+VID +    
Sbjct: 22  LGDRVLRQPAKRITKVDDETRQLIRDMLQTMYSNDGIGLAAPQVGINKQLIVIDCEPDNP 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+V INP I   S +    QEGCLSIP    DVKR   + V Y D N + Q + A  
Sbjct: 82  ANPPLVLINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATD 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LL  C+QHE+DHLNG++F+D + 
Sbjct: 142 LLGRCIQHEMDHLNGVVFVDRVD 164


>gi|325662245|ref|ZP_08150860.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086046|ref|ZP_08335129.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471497|gb|EGC74718.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406969|gb|EGG86474.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 156

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +V + +EK+      LID+M + MY   G+GLAA Q+GVL R+V 
Sbjct: 1   MAIRKIREMGDDVLTKVCKEVEKVTPRTKVLIDDMFDTMYDAMGVGLAAPQVGVLKRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P++ INP+II  S +    +EGCLS+P     V R  ++ VR  D + +
Sbjct: 61  IDVGE-----GPILLINPEIIETSGE-QTGEEGCLSVPGKSGVVTRPNYVKVRAFDEDMK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
             ++  +GLLA    HE+DHL+G L+++ +     DM  ++
Sbjct: 115 EIVLEGEGLLARAFCHEIDHLDGHLYVEKVEGELEDMYYEE 155


>gi|319790017|ref|YP_004151650.1| peptide deformylase [Thermovibrio ammonificans HB-1]
 gi|317114519|gb|ADU97009.1| peptide deformylase [Thermovibrio ammonificans HB-1]
          Length = 177

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 108/165 (65%), Gaps = 3/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + I+PD  L+  ++ +E+ N ++++L++ M E MY   G+GLAA Q+GVL R++++DL+
Sbjct: 3   DIRIYPDEALKSKAQKVEEFNQELVDLVNGMFETMYKRGGVGLAANQVGVLKRVLILDLK 62

Query: 65  DHAHR--KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                  KNP+V +NP+I+  S+   V +EGCLS+P     VKR+ ++ V+  + + +  
Sbjct: 63  AGTEEQGKNPIVLVNPEIVA-SEGEVVKEEGCLSLPGLYRKVKRAQWVKVKAQNLDGEEI 121

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            I  +GLLA  LQHE+DHLNG++FID LS L++ +  +K  KL +
Sbjct: 122 EIEGEGLLARALQHEIDHLNGVVFIDRLSPLQKRLALEKFKKLKR 166


>gi|323496228|ref|ZP_08101286.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
 gi|323318505|gb|EGA71458.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
          Length = 167

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 107/170 (62%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +E  +S I  LID+ML+ +Y T +GIGLA+ Q+G    +V
Sbjct: 1   MTVLKILTAPDPKLKTQAHKVEDFSS-IQTLIDDMLDTLYDTDNGIGLASTQVGRSEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL D  +R  P++ +NP++++ S   ++ QEGCLS+PDY A+V+R   + V   D + 
Sbjct: 60  IIDLSD--NRDEPLILVNPEVVSGSH-KALGQEGCLSVPDYYAEVERYTSVVVSAQDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL G LFID+LS LKR M  KK+ K ++ R
Sbjct: 117 NSITIESDDFLAIVMQHEIDHLAGNLFIDYLSPLKRQMAMKKVKKHLKSR 166


>gi|326329763|ref|ZP_08196084.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
 gi|325952528|gb|EGD44547.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
          Length = 181

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAVQPIRLFGDPVLRKPAIEVVDFDKELHKLVADLTDTMLEAPGAGLAAPQIGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            +NP + T S++     EGCLS+PD   D +R+  +  +  D + +
Sbjct: 61  WYVDGQVG-----HLVNPDL-TLSEETQDGGEGCLSLPDITFDCRRALSVVAKGFDMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  +QHE DHL+GILFID L    R    K++ +
Sbjct: 115 PVTIEGSELLARAIQHETDHLDGILFIDRLDEAARKAAMKEIRE 158


>gi|229526222|ref|ZP_04415626.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
 gi|254286639|ref|ZP_04961594.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|150423223|gb|EDN15169.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|229336380|gb|EEO01398.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
          Length = 168

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y+T +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D  +R  P+V INPK+++  ++  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSD--NRDQPLVLINPKVVS-GNNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|15617090|ref|NP_240303.1| polypeptide deformylase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681842|ref|YP_002468228.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682397|ref|YP_002468781.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471547|ref|ZP_05635546.1| peptide deformylase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11131992|sp|P57563|DEF_BUCAI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767572|sp|B8D9R9|DEF_BUCA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767573|sp|B8D821|DEF_BUCAT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|25303709|pir||E84987 formylmethionine deformylase (EC 3.5.1.31) [imported] - Buchnera
           sp. (strain APS)
 gi|10039155|dbj|BAB13189.1| polypeptide deformylase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622130|gb|ACL30286.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624685|gb|ACL30840.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 173

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 111/167 (66%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+++IN  I  + ++M++ MY  +GIGLAA Q+ +  +++V
Sbjct: 1   MSLLKILYYPDIRLRILAKPVKEINKKIQKIANDMIDTMYQEEGIGLAATQVNIPLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++      +KN +V INPKII    D S+ +EGCLSIP+Y+A + RS +I V+ ++ + +
Sbjct: 61  VNT--MEQKKNNLVLINPKIIKKEGDISI-EEGCLSIPEYQASIPRSNYIQVQAVNLDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I A  +L+ C+QHE+DHL G LFID+LS+ KR+ I KK  K+ +
Sbjct: 118 KIEIEAKSILSICIQHEIDHLKGKLFIDYLSKFKRERIQKKFEKINK 164


>gi|15894999|ref|NP_348348.1| peptide deformylase [Clostridium acetobutylicum ATCC 824]
 gi|3023622|sp|O05100|DEF1_CLOAB RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|15024688|gb|AAK79688.1|AE007681_9 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC
           824]
 gi|1905954|gb|AAB50347.1| deformylase [Clostridium acetobutylicum ATCC 824]
 gi|325509136|gb|ADZ20772.1| peptide deformylase [Clostridium acetobutylicum EA 2018]
          Length = 150

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/150 (42%), Positives = 98/150 (65%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR +EKI+  ++ LID+M E MY+ DG+GLAA Q+G+L RLVV
Sbjct: 1   MAIRSIRKYGDELLRKKSRKVEKIDKRLLTLIDDMFETMYNADGVGLAAPQVGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S   +V  EGCLSIP+ + +V+R  ++  + ++   +
Sbjct: 61  IDVGE-----GPVVLINPEILETSG-KAVDVEGCLSIPERQGEVERPTYVKAKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             +I A+ L A  + HE DHLNG+LF+D L
Sbjct: 115 EIVIEAEDLFARAICHETDHLNGVLFVDKL 144


>gi|224369791|ref|YP_002603955.1| Def [Desulfobacterium autotrophicum HRM2]
 gi|259645178|sp|C0QI55|DEF_DESAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|223692508|gb|ACN15791.1| Def [Desulfobacterium autotrophicum HRM2]
          Length = 174

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 96/169 (56%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +P  +L + +  +E I+  ++ L+++M E M+   G+GLAA Q+G   R++V
Sbjct: 1   MALLEIYQYPAAVLLKKALQVETIDDTVIKLVNDMGETMFEAPGVGLAAPQVGQSRRIIV 60

Query: 61  IDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            + Q      +   K     INP+II  S       E CLS+PDY  +VKR   +TVR +
Sbjct: 61  YNPQAGSSNANEDTKEFKALINPEIIASSGSIVSENEACLSVPDYSCNVKRFETVTVRGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   +     A GLLA  +QHE+DHL+GIL+ID +S LKR+M  KK+ K
Sbjct: 121 NLEGKKLEFDAQGLLAVIMQHEIDHLDGILYIDRISTLKRNMYKKKVRK 169


>gi|239944168|ref|ZP_04696105.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           15998]
 gi|239990624|ref|ZP_04711288.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           11379]
 gi|291447640|ref|ZP_06587030.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291350587|gb|EFE77491.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 212

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECKDVTAFDDELAQLIDDMFASQKTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D   +++  V  NP +   + +  V     EGCLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGKRHTGVVCNPVLEELAPEMRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAK 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M +
Sbjct: 156 GNPIRVKGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201


>gi|58040267|ref|YP_192231.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
           621H]
 gi|58002681|gb|AAW61575.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
           621H]
          Length = 184

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/166 (43%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++I P P+LR V+R +   +   I   +  M   MY   GIGLAA Q+G+  R  ++D+
Sbjct: 17  PILIAPQPVLREVTRDVRPEDIAFIREQLPGMFSAMYKAPGIGLAAPQVGLGMRFALVDV 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +    + PM+ INP+II+ SD  +  +EGCLS+P+  A+V R   I VRY +   +   
Sbjct: 77  AEEDAPREPMLLINPEIISDSDQLAAREEGCLSLPNQYAEVVRPESIRVRYRNLAGETIE 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             A GLLATC+QHE+DHL+GILF+DHLS LKR+MI ++++K  +LR
Sbjct: 137 RDASGLLATCIQHEMDHLDGILFVDHLSTLKRNMIMRRLAKEQKLR 182


>gi|150007311|ref|YP_001302054.1| peptide deformylase [Parabacteroides distasonis ATCC 8503]
 gi|255014064|ref|ZP_05286190.1| peptide deformylase [Bacteroides sp. 2_1_7]
 gi|256839600|ref|ZP_05545109.1| polypeptide deformylase [Parabacteroides sp. D13]
 gi|262382116|ref|ZP_06075254.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
 gi|298375297|ref|ZP_06985254.1| peptide deformylase [Bacteroides sp. 3_1_19]
 gi|301310689|ref|ZP_07216628.1| peptide deformylase [Bacteroides sp. 20_3]
 gi|158513748|sp|A6L9R8|DEF_PARD8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149935735|gb|ABR42432.1| polypeptide deformylase [Parabacteroides distasonis ATCC 8503]
 gi|256738530|gb|EEU51855.1| polypeptide deformylase [Parabacteroides sp. D13]
 gi|262297293|gb|EEY85223.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
 gi|298267797|gb|EFI09453.1| peptide deformylase [Bacteroides sp. 3_1_19]
 gi|300832263|gb|EFK62894.1| peptide deformylase [Bacteroides sp. 20_3]
          Length = 185

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 5/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  + K   D+  L+ NM E MY+ DG+GLAA Q+G+  RLVVI
Sbjct: 1   MILPVFLYGQPVLRKEAEDVPKDYPDLKQLVANMFETMYNADGVGLAAPQVGLSIRLVVI 60

Query: 62  DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D           +      INP+ +  S++    +EGCLS+P     V RS  + VRY D
Sbjct: 61  DGDVMGDDFPECKGFKRALINPEFLERSEEEIAMEEGCLSLPGIHEKVSRSKTVRVRYWD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            N +      +G  A  +QHE +HL G +FID++S ++R +   K++ +++ 
Sbjct: 121 ENWEEHEEVVEGFAARIVQHECEHLTGHVFIDNVSAIRRQLNKGKLNSIIKG 172


>gi|298529648|ref|ZP_07017051.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511084|gb|EFI34987.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 169

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +  +PD IL + +RP+EKI+  I++L  +M  +MY   GIGLAA Q+G   R+V +
Sbjct: 1   MSRKIHTYPDKILTQKARPVEKIDDYIIDLSRDMARLMYEHRGIGLAAPQVGESLRVVTV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL    ++++   +INP+II  S+D +  +EGCLS+  Y+  V R+  + VR ++   + 
Sbjct: 61  DLSGPDNQEDLFTYINPEIIA-SEDETTTEEGCLSVAGYQTRVCRARKVKVRALNLQGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            I   + L A CLQHE+DHLNGILFIDH+SRLKR M  KK+ K ++ +
Sbjct: 120 VIHEGEDLWAVCLQHEIDHLNGILFIDHISRLKRAMYDKKVKKWLENK 167


>gi|326402652|ref|YP_004282733.1| peptide deformylase [Acidiphilium multivorum AIU301]
 gi|325049513|dbj|BAJ79851.1| peptide deformylase [Acidiphilium multivorum AIU301]
          Length = 185

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/166 (45%), Positives = 108/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            ++I PD  LR  +R +   +  D+  L+  M   MY   GIGLAA QIGV  RLVV+DL
Sbjct: 14  EILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDL 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                ++ PMV INP+I   S++    +EGCLS+P   A+V R   I+V + D + + + 
Sbjct: 74  APDDQKQ-PMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRT 132

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K ++ +
Sbjct: 133 IDADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAKDLREK 178


>gi|183598657|ref|ZP_02960150.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827]
 gi|188020843|gb|EDU58883.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827]
          Length = 167

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 111/170 (65%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+  I +    LID++L+ MYST +GIGLAA QIG    ++
Sbjct: 1   MAVRAIIEIPDERLRVKCDPVTDIAAA-QPLIDDLLDTMYSTDNGIGLAATQIGATLSVM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +  +R  PMVF+NP+II  S+  + YQEGCLS+P+  ADV R   + V+ +D + 
Sbjct: 60  VIDISE--NRDQPMVFVNPEIIE-SEGETSYQEGCLSVPEIYADVARFKRVKVKALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +  I  +D  LA  +QHE+DHL+G +F+DHLS LKR+M+ KK+ K  +LR
Sbjct: 117 KAFITDSDEFLAIVMQHEIDHLHGKVFLDHLSTLKRNMLLKKLKKQQRLR 166


>gi|188995931|ref|YP_001930183.1| peptide deformylase [Porphyromonas gingivalis ATCC 33277]
 gi|238689275|sp|B2RMJ1|DEF_PORG3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188595611|dbj|BAG34586.1| putative peptide deformylase [Porphyromonas gingivalis ATCC 33277]
          Length = 189

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I      +  LI NM E MY +DGIGLAA QIG+  R++VI
Sbjct: 1   MLLPIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVI 60

Query: 62  DLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D                V IN  I    +D     EGCLS+P     V+R   I +RY+D
Sbjct: 61  DADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + Q       G  A  +QHE DH++G LFIDH+S +++ +I  K+  +++ +
Sbjct: 121 EDFQPHEEVLHGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGK 173


>gi|172040657|ref|YP_001800371.1| peptide deformylase [Corynebacterium urealyticum DSM 7109]
 gi|171851961|emb|CAQ04937.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109]
          Length = 166

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    L  F DP+LR  +  +E     ++ +  L+ +MLE M    G+GLAA Q+GV  R
Sbjct: 1   MAVLSLRYFGDPVLRTPAAEVEADFSSDAALATLVADMLETMDHHGGVGLAANQVGVTKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           + V D +           INP   +  ++     EGCLSIP  R +V+R+  + +R    
Sbjct: 61  VFVYDCESDRG-----HVINPTWESVGEETQTGPEGCLSIPGIRGEVQRAETVRLRGQTL 115

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +   +   GLLA C+QHE DHL+G+LF+ HLS   R      + +
Sbjct: 116 DGELVDMEVSGLLARCVQHETDHLDGVLFLKHLSPEDRKQAMADIRR 162


>gi|261344111|ref|ZP_05971755.1| peptide deformylase [Providencia rustigianii DSM 4541]
 gi|282567702|gb|EFB73237.1| peptide deformylase [Providencia rustigianii DSM 4541]
          Length = 168

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 100/158 (63%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+    + +  LID+++E MYSTD GIGLAA QI     ++
Sbjct: 1   MAVREIIEIPDERLRIKCAPVTDF-AAVQTLIDDLIETMYSTDTGIGLAAPQIAETKAIM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +   R  PMVFINP+II  S+  + YQEGCLS+PD  ADV R   + V+  D + 
Sbjct: 60  VIDISE--ERNQPMVFINPEIIE-SEGETSYQEGCLSVPDVYADVPRFQRVKVKAFDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              I+ +D  LA  +QHE+DHLNG +FIDHLS LKR+M
Sbjct: 117 NEFIVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154


>gi|148285009|ref|YP_001249099.1| peptide deformylase [Orientia tsutsugamushi str. Boryong]
 gi|158514262|sp|A5CF65|DEF_ORITB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146740448|emb|CAM80944.1| polypeptide deformylase [Orientia tsutsugamushi str. Boryong]
          Length = 181

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 100/174 (57%), Gaps = 9/174 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LV  PDPIL++VS P++ +N  I  LID+MLE MY   G+GLAA Q+ V  R++V
Sbjct: 1   MSILSLVTAPDPILKKVSSPVDTVNDSIRQLIDDMLETMYHNHGVGLAAPQVAVSKRIIV 60

Query: 61  IDLQDHA---------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +DL               K P+  +NP +   S+     +EGCLS+P    +V R   I 
Sbjct: 61  LDLSKVDIEEDNITNSEYKYPLFMVNPIVKAISNQTVTAKEGCLSLPKQAIEVSRYHEIQ 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           V Y+D   + + + A G LA  +QHE+DHL+GIL +D+LS LK++     +SK+
Sbjct: 121 VTYLDYYNKLKTLNAAGWLARAIQHEVDHLDGILLVDYLSNLKKEATLNTLSKI 174


>gi|269468439|gb|EEZ80104.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster
           bacterium]
          Length = 185

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 70/185 (37%), Positives = 110/185 (59%), Gaps = 20/185 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +PDP LR  ++ ++ +N     L+ NM E MY+ DGIGLAA QI    ++VV+
Sbjct: 1   MILPILHYPDPRLRTKAKEVDAVNDKTRILVKNMFETMYAEDGIGLAATQINQHLQIVVM 60

Query: 62  DLQDHAH-------------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           D+ D                      + +P+ FINPKI T S     + EGCLS+P ++A
Sbjct: 61  DVPDSQDDYELLLKNRKNDSDKETNIQHHPLCFINPKITTISG-HEKHIEGCLSVPGFQA 119

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +V+RS  IT+  ++   +   ++A  LLA C+QHELDHL GILF+D+LS+LK+  + +K 
Sbjct: 120 EVERSNQITIEALNEQGESFTLHASNLLAVCIQHELDHLKGILFVDYLSKLKQKRLLEKT 179

Query: 163 SKLVQ 167
            K+++
Sbjct: 180 KKVIK 184


>gi|189347171|ref|YP_001943700.1| peptide deformylase [Chlorobium limicola DSM 245]
 gi|238692163|sp|B3EE19|DEF_CHLL2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189341318|gb|ACD90721.1| peptide deformylase [Chlorobium limicola DSM 245]
          Length = 185

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+ D +LR+ + P+E ++ ++  L+ NM E MYS  GIGLAA Q+G   RL+V+
Sbjct: 1   MIVPINIYSDDVLRQQALPLEGVDKEVEELLGNMFETMYSAPGIGLAAPQVGRSLRLLVL 60

Query: 62  DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D+       N  PMV INP+I+     +   +EGCLS+P  + DV R + I++ Y D + 
Sbjct: 61  DISCMREYANVKPMVVINPEIVAVKG-YRSMEEGCLSLPGLQGDVVRPSSISLNYRDEHF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q     GLLA  LQHE+DHL+G LF+D L + +R  + K++  L   R
Sbjct: 120 EGQNAEFSGLLARVLQHEIDHLDGRLFVDRLQKKERRKVQKELDALASGR 169


>gi|148259426|ref|YP_001233553.1| peptide deformylase [Acidiphilium cryptum JF-5]
 gi|146401107|gb|ABQ29634.1| peptide deformylase [Acidiphilium cryptum JF-5]
          Length = 188

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 75/166 (45%), Positives = 108/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            ++I PD  LR  +R +   +  D+  L+  M   MY   GIGLAA QIGV  RLVV+DL
Sbjct: 17  EILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDL 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                ++ PMV INP+I   S++    +EGCLS+P   A+V R   I+V + D + + + 
Sbjct: 77  APDDQKQ-PMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRT 135

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K ++ +
Sbjct: 136 IDADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAKDLREK 181


>gi|150006541|ref|YP_001301285.1| peptide deformylase [Bacteroides vulgatus ATCC 8482]
 gi|294778840|ref|ZP_06744257.1| peptide deformylase [Bacteroides vulgatus PC510]
 gi|319642942|ref|ZP_07997578.1| peptide deformylase [Bacteroides sp. 3_1_40A]
 gi|158513745|sp|A6L7J9|DEF_BACV8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149934965|gb|ABR41663.1| peptide deformylase [Bacteroides vulgatus ATCC 8482]
 gi|294447293|gb|EFG15876.1| peptide deformylase [Bacteroides vulgatus PC510]
 gi|317385490|gb|EFV66433.1| peptide deformylase [Bacteroides sp. 3_1_40A]
          Length = 184

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+ +  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL   +      +     +INP I+    +    +EGCLS+P     VKR   I V Y+D
Sbjct: 61  DLDVMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHEAVKRPDRIHVTYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +    + +G LA  +QHE DHL+G +FIDHLS L++ MI  K+  +++ +
Sbjct: 121 EELKEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173


>gi|303237149|ref|ZP_07323719.1| peptide deformylase [Prevotella disiens FB035-09AN]
 gi|302482536|gb|EFL45561.1| peptide deformylase [Prevotella disiens FB035-09AN]
          Length = 187

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 93/174 (53%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+     P+LR+V+  I     ++  LI +M E   ++DGIGLAA QIG   RLVVI
Sbjct: 1   MILPIYTLGQPVLRKVAEDIPLDYPNLQQLIADMFETCSASDGIGLAAPQIGKSIRLVVI 60

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL         ++     FIN  I+   D +    +EGCLS+P    +V R   I V+Y+
Sbjct: 61  DLDVISESFPEYKDFKHAFINGHILETDDSETETMEEGCLSLPGIHENVTRPKRIHVKYV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N +    + DG LA  +QHE DH+ G +F D +S  ++ +I KKM  L Q R
Sbjct: 121 DENLEEHDEWIDGYLARVIQHEFDHIEGKVFTDRISPFRKQIIAKKMKALSQGR 174


>gi|28900639|ref|NP_800294.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365515|ref|ZP_05778052.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|260877578|ref|ZP_05889933.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|260895409|ref|ZP_05903905.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|260901682|ref|ZP_05910077.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|31076642|sp|Q87I22|DEF2_VIBPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|28809019|dbj|BAC62127.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085281|gb|EFO34976.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|308090907|gb|EFO40602.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|308108907|gb|EFO46447.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|308114324|gb|EFO51864.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|328470579|gb|EGF41490.1| peptide deformylase [Vibrio parahaemolyticus 10329]
          Length = 168

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 111/170 (65%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  +++ I  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDVST-IQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D   R +P++ +NP++++  ++ ++ QEGCLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISD--ERNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 NPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166


>gi|220931832|ref|YP_002508740.1| peptide deformylase [Halothermothrix orenii H 168]
 gi|254767591|sp|B8CWS6|DEF_HALOH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219993142|gb|ACL69745.1| peptide deformylase [Halothermothrix orenii H 168]
          Length = 154

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR  ++P+ +I    ++LIDNM+E MY  +G+GLAA Q+GV  R++V
Sbjct: 1   MPVLQIRKIGDPVLRSKAKPVTEITKKTLSLIDNMVETMYQAEGVGLAAPQVGVSKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       +  +  INP+II   +   + +EGCLS+P     V R++ +TV+ ++   +
Sbjct: 61  VD---TGEGQGLIELINPEIIET-EGKDIMEEGCLSVPGQTGKVIRASKVTVKGLNRGGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A+G LA   QHE+DHLNGILFID + R+  +MI
Sbjct: 117 EVRIRAEGFLARAFQHEIDHLNGILFIDKVVRIGEEMI 154


>gi|299136398|ref|ZP_07029581.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
 gi|298600913|gb|EFI57068.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
          Length = 185

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 104/168 (61%), Gaps = 1/168 (0%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              +V +PDP+L +    + +   ++  L+D M E MY+  GIGLAA QIG+  ++ VID
Sbjct: 18  IHEVVKYPDPVLSKPGEKVTEFTPELAQLVDEMFESMYAAQGIGLAAPQIGISKQITVID 77

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +      ++ +  INP+II   +   V +EGCLS+P+ R  V R+A + VR  +   +  
Sbjct: 78  VSFKERPEDKLALINPEIIER-EGKQVEEEGCLSLPEIREKVSRAARVKVRAQNVKGEFF 136

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +  + LLA  LQHE+DHL+GILFI+HLSRLKRD++ +++ KL +  +
Sbjct: 137 EVEGEELLARALQHEIDHLHGILFIEHLSRLKRDLVHRRIRKLQKNGE 184


>gi|34541765|ref|NP_906244.1| peptide deformylase [Porphyromonas gingivalis W83]
 gi|39930820|sp|Q7MT07|DEF_PORGI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34398083|gb|AAQ67143.1| polypeptide deformylase [Porphyromonas gingivalis W83]
          Length = 189

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I      +  LI NM E MY +DGIGLAA QIG+  R++VI
Sbjct: 1   MLLPIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVI 60

Query: 62  DLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D                V IN  I    +D     EGCLS+P     V+R   I +RY+D
Sbjct: 61  DADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + Q       G  A  +QHE DH++G LFIDH+S +++ +I  K+  +++ +
Sbjct: 121 EDFQPHEEVLQGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGK 173


>gi|213855562|ref|ZP_03383802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 148

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/151 (43%), Positives = 104/151 (68%), Gaps = 3/151 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N  
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + ADGLLA C+QHE+DHL G LFID+LS
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLS 148


>gi|218778408|ref|YP_002429726.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01]
 gi|254767578|sp|B8FHH0|DEF_DESAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|218759792|gb|ACL02258.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01]
          Length = 172

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 70/171 (40%), Positives = 106/171 (61%), Gaps = 2/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P PIL +  + IE I+ D++ L+++M E +Y   G+GLAAVQ+GV   ++V
Sbjct: 1   MALLDIVTYPAPILGKPCKLIEDIDEDLVCLVEDMTETLYDAPGLGLAAVQVGVDKAMLV 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D+   +++      V INPKI+      +   EGCLS+P++RADV R A +TV  +D  
Sbjct: 61  YDVAEDENSESTGLKVLINPKIVHTEGKVTSENEGCLSVPEFRADVPRFACVTVEGVDHE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   I A+GLLA  LQHE+DHL G LFID +S LKR M  ++++K ++  
Sbjct: 121 GKPVKIDAEGLLAIVLQHEIDHLEGKLFIDRISSLKRSMYKRRVAKALKAE 171


>gi|308177754|ref|YP_003917160.1| peptide deformylase [Arthrobacter arilaitensis Re117]
 gi|307745217|emb|CBT76189.1| peptide deformylase [Arthrobacter arilaitensis Re117]
          Length = 187

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR  ++ +     ++  L+++M + M +  G GLAA Q+GV  R+  
Sbjct: 1   MAILGIRIIGDPVLRTPAQEVTDFGPELQKLVEDMDQTMENVTGAGLAAPQVGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNA 119
                    +     +NP +   S+D+   Q EGCLSIP   A V+R   +     D   
Sbjct: 61  YQTG-----QERGHIVNPVL-ELSEDYQEDQVEGCLSIPGIAAPVRRRRHVKATGFDKFG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               I  DGLLA C QHE DHL+GILF+D L   ++    + +  
Sbjct: 115 NPVEIEGDGLLARCFQHETDHLDGILFLDRLEPEEKKAAWRTLRA 159


>gi|163815237|ref|ZP_02206614.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759]
 gi|158449432|gb|EDP26427.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759]
          Length = 155

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 58/148 (39%), Positives = 87/148 (58%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  RP+ K++   + LID+M + MY  +G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRNIRLDGDDILRKTCRPVTKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     NP+  INP+II    +    +EGCLS+P     V R   +  +  D N +
Sbjct: 61  IDVCD----DNPLCLINPEIIEADGE-QTGEEGCLSLPGKFGTVTRPMHVVCKAYDENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA  + HELDHL+G L+ D
Sbjct: 116 EFTVEGEGLLARAICHELDHLDGKLYKD 143


>gi|224060121|ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
 gi|222847305|gb|EEE84852.1| peptide deformylase [Populus trichocarpa]
          Length = 258

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 91/166 (54%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +V +PDPILR  ++ I+  + ++  L+D M +VMY TDGIGL+A Q+G+  +L+V 
Sbjct: 65  APLKIVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF 124

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +  D     + +V +NP++  +S    ++ EGCLS P   ADVKR   + +   D N   
Sbjct: 125 NPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKIDARDINGAR 184

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             +   GL A   QHE DHL GILF D ++    D I   +  L +
Sbjct: 185 FTVNLSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQALEK 230


>gi|299140626|ref|ZP_07033764.1| peptide deformylase [Prevotella oris C735]
 gi|298577592|gb|EFI49460.1| peptide deformylase [Prevotella oris C735]
          Length = 187

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V++ I      +  LI +M E + +++GIGLAA QIG   R+VVI
Sbjct: 1   MILPIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVI 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL         ++     FIN  I+ F +D      +EGCLS+P     V R   I V+Y
Sbjct: 61  DLDVLSDDYPEYKGLRKAFINAHILEFDEDSPKETIEEGCLSLPGLSEKVTRPTRIHVKY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D +      + DG LA  +QHE DHL G +FID +  L++ MI  K+  +++ +
Sbjct: 121 QDEDFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMKGK 175


>gi|218132889|ref|ZP_03461693.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991762|gb|EEC57766.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC
           43243]
          Length = 159

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 9/154 (5%)

Query: 1   MVKKPLVIFP---DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + + +     D ILR+ ++ + ++   I  LID+M + MY  +G GLAA Q+G+  R
Sbjct: 1   MALRNIRVLGQDGDEILRKTAKEVTEMTPKIRELIDDMFDTMYEANGCGLAAPQVGIRKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +VVID  D     +P+V INP I+  S +     EGCLS+P     V R  +  V+  D 
Sbjct: 61  IVVIDCGD-----DPIVLINPVILETSGE-QTGSEGCLSVPGKCGTVTRPNYAKVKAFDE 114

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +    I+  + LLA CL HE+DHL+GI+++D + 
Sbjct: 115 DMNEYIVEGEELLARCLCHEIDHLDGIMYVDKVE 148


>gi|325963678|ref|YP_004241584.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469765|gb|ADX73450.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 190

 Score =  193 bits (492), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII--TFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +     S    D    +EGCLS P  +  +KR+ +  V   
Sbjct: 61  YKYANDDGAPPAGVLVNPVLTLSKISGAVPDPDEEEEGCLSFPSGQYPLKRAEWARVEGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D   Q     A G  A  +QHE DHL+G L+++ L         K+  K
Sbjct: 121 DGYGQPVRFEATGWFARVMQHEYDHLDGKLYVNRLMDRYARKAMKQAKK 169


>gi|310659160|ref|YP_003936881.1| defa [Clostridium sticklandii DSM 519]
 gi|308825938|emb|CBH21976.1| DefA [Clostridium sticklandii]
          Length = 152

 Score =  193 bits (492), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ SR ++KIN  I+ L+++M++ MY  DG+GLAA Q+GVL R+VV
Sbjct: 1   MAIRIIRTDGDEVLRKKSRAVDKINDKILELVEDMIDTMYEADGVGLAAPQVGVLKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D      P+V INP+I+  S +     EGCLS+P     V R  ++  +  D +  
Sbjct: 61  IDVGD-----GPIVMINPEILESSGE-QTDDEGCLSLPGKFGCVTRPYYVKAKAYDTDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             ++ A+ L A  + HE+DHL+GILF D + 
Sbjct: 115 EFVVEAEELFARAICHEIDHLDGILFKDKVE 145


>gi|170781968|ref|YP_001710300.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156536|emb|CAQ01687.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 188

 Score =  193 bits (492), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R ++  + D+ +L+ +M E M    G+GLAA Q+GV  R+ V
Sbjct: 1   MAVLPIRITGDPVLHAPARDVQAFDDDLRSLVADMYETMDEAPGVGLAAPQVGVPLRVFV 60

Query: 61  IDLQDHAHRK------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
              +            NP +FI P  +  +D+    +EGCLS P  R  + R+    +R 
Sbjct: 61  YSYETDDGEPLRGVAVNPDLFITPVAVREADE-DTEEEGCLSFPGERFPLVRADRAILRA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D + +   I A G  A  LQHE DHL+G+L+ D L+   R  + K + K
Sbjct: 120 VDLDGRPYEIEAAGWFARILQHEYDHLDGLLYTDRLAHEHRKPVAKVIRK 169


>gi|83273759|ref|XP_729539.1| polypeptide deformylase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487628|gb|EAA21104.1| polypeptide deformylase, putative [Plasmodium yoelii yoelii]
          Length = 236

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 97/164 (59%), Gaps = 1/164 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +VI+P+ ILR+ S  +   + ++ NLI  M + MY   GIGL+A Q+ +  R++V + L 
Sbjct: 62  IVIYPNSILRQKSEEVIYFDDNLKNLIRRMFKAMYENKGIGLSAPQVNISKRIIVWNALY 121

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +    KN  VFINP I+  S   +   EGCLS P+  A V+R A +++ Y D N    + 
Sbjct: 122 EKRDEKNERVFINPLIVQESAVKNKLIEGCLSFPNIEAKVERPAIVSISYYDINGNKHLK 181

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              G+ A   QHE DHLNG+LFID +++ ++  I  K+++LV+ 
Sbjct: 182 ILKGIHARVFQHEYDHLNGVLFIDRITQTEKQKIKGKLNELVRE 225


>gi|17230571|ref|NP_487119.1| peptide deformylase [Nostoc sp. PCC 7120]
 gi|23396564|sp|Q8YSK6|DEF1_ANASP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|17132173|dbj|BAB74778.1| polypeptide deformylase [Nostoc sp. PCC 7120]
          Length = 187

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/143 (43%), Positives = 89/143 (62%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I K++ +   LI +ML+ MYS+DGIGLAA Q+G+  +L+VID +    
Sbjct: 22  LGDRVLRQPAKRITKVDDETRQLIRDMLQTMYSSDGIGLAAPQVGINKQLIVIDCEPDNP 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P++ INP I   S +    QEGCLSIP    DVKR   + V Y D N + Q + A  
Sbjct: 82  ANPPLILINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATD 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LL  C+QHE+DHLNG++F+D + 
Sbjct: 142 LLGRCIQHEMDHLNGVVFVDRVD 164


>gi|269968185|ref|ZP_06182216.1| peptide deformylase [Vibrio alginolyticus 40B]
 gi|269827183|gb|EEZ81486.1| peptide deformylase [Vibrio alginolyticus 40B]
          Length = 168

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 111/170 (65%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  +++ +  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDVST-VQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D   R +P++ +NP++++  ++ ++ QEGCLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISD--ERNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 NPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKSQ 166


>gi|295134935|ref|YP_003585611.1| peptide deformylase [Zunongwangia profunda SM-A87]
 gi|294982950|gb|ADF53415.1| peptide deformylase [Zunongwangia profunda SM-A87]
          Length = 196

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++ ++PI+K    +  LI NM + MY+  G+GLAA Q+GV  RL VI
Sbjct: 1   MILPIVAYGDPVLKKKAKPIDKDYPKLEELISNMWDTMYNAYGVGLAAPQVGVPIRLFVI 60

Query: 62  DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A             +    VFIN K+I  + D   + EGCLSIPD R D+ R   
Sbjct: 61  DAAPFAEDDDLTAEEKEYLKGFKRVFINAKVIEETGDEWAFSEGCLSIPDVREDIFRKPE 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+ Y D N + +     GL A  +QHE DH  GILF + +S LK+ +I  ++ K+   +
Sbjct: 121 VTIEYQDQNFETKKETFTGLAARVVQHEYDHTEGILFTEKISSLKKRLINGRLKKISSGK 180


>gi|304382925|ref|ZP_07365407.1| peptide deformylase [Prevotella marshii DSM 16973]
 gi|304335950|gb|EFM02198.1| peptide deformylase [Prevotella marshii DSM 16973]
          Length = 186

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 98/175 (56%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V++ I     D+  LI NM E M S+DGIGLAA QIG   R+VVI
Sbjct: 1   MILPIYVYGQPVLRKVAQDISSDYPDLQELIANMFETMDSSDGIGLAAPQIGKSIRVVVI 60

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL         ++     +INP I+   +  +  + +EGCLSIP     V R + I V Y
Sbjct: 61  DLNVLSDDFPEYKDFRKAYINPHILEIDETSEKRLMEEGCLSIPGLHEKVPRFSRIHVTY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +D        + +G LA  +QHE DHL G +F+DH+S L++ +I  K+  L Q R
Sbjct: 121 LDEAFVSHDEWVEGYLARVMQHEFDHLEGKMFVDHISPLRKQLIKNKLKALTQGR 175


>gi|269123156|ref|YP_003305733.1| peptide deformylase [Streptobacillus moniliformis DSM 12112]
 gi|268314482|gb|ACZ00856.1| peptide deformylase [Streptobacillus moniliformis DSM 12112]
          Length = 169

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 100/167 (59%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+K  + ++  PILR+ S  + + N ++ N +D M++ M   +GIGLAA Q+G+  R  V
Sbjct: 1   MIKLNIYVYEAPILRKKSEEVVEFNDELRNTLDEMVKTMRLANGIGLAANQVGIGKRFFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ D   +      +NP+I++F ++   +QEGCLSIP    +V R   I VRY D N  
Sbjct: 61  LEIDDEITK-----VVNPEILSFGEEMVEFQEGCLSIPGIFKNVLRPESIVVRYQDENGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                 +GL +   QHELDH++GILFID +S + R++I KK+  + +
Sbjct: 116 FVERELNGLKSRAFQHELDHIDGILFIDKISPMSRNLIRKKLEVMKK 162


>gi|260591629|ref|ZP_05857087.1| peptide deformylase [Prevotella veroralis F0319]
 gi|260536429|gb|EEX19046.1| peptide deformylase [Prevotella veroralis F0319]
          Length = 186

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVI
Sbjct: 1   MVLPVYTYGQPVLRKVAEDIPLDYPDLQQLIQNMFETNTASDGVGLAAPQIGKSIRVVVI 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL         ++     FIN  I+ F D +    +EGCLS+P     V R+  I V+Y+
Sbjct: 61  DLDVLSDTFPEYKGFRHAFINGHILEFDDSETETLEEGCLSLPGIHESVTRAKRIYVKYV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + +G LA  +QHE DHL+G +F DHLS  ++ MI  K+  L+Q +
Sbjct: 121 DENLVEHEEWIEGYLARVIQHEFDHLDGKVFTDHLSPFRKQMINSKLKALLQGK 174


>gi|120599034|ref|YP_963608.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|146292895|ref|YP_001183319.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|120559127|gb|ABM25054.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|145564585|gb|ABP75520.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|319426575|gb|ADV54649.1| peptide deformylase [Shewanella putrefaciens 200]
          Length = 163

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 102/167 (61%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   +   ID+++E MY TD GIGLAA Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAVQGFIDDLIETMYHTDDGIGLAATQVGSTDAII 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D   R  P+V INP+I+  S +F V +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSD--GRDQPLVLINPEIVEKSGEF-VGEEGCLSIPGYRAKVSRFEKVKVTALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRKYA 163


>gi|160889625|ref|ZP_02070628.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492]
 gi|270293967|ref|ZP_06200169.1| polypeptide deformylase [Bacteroides sp. D20]
 gi|317479180|ref|ZP_07938317.1| polypeptide deformylase [Bacteroides sp. 4_1_36]
 gi|156860617|gb|EDO54048.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492]
 gi|270275434|gb|EFA21294.1| polypeptide deformylase [Bacteroides sp. D20]
 gi|316904668|gb|EFV26485.1| polypeptide deformylase [Bacteroides sp. 4_1_36]
          Length = 185

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M + +G+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDIAPDYPNLKELIENMFETMDNAEGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +L         ++     +IN  I+  S +     EGCLS+P     VKR   I V+Y+D
Sbjct: 61  NLDVLSDDLPEYKDFRKAYINAHILEVSGEEVSMDEGCLSLPGIHESVKRGNKIRVQYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N +      +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 ENLEPHDEIIEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173


>gi|225010669|ref|ZP_03701139.1| peptide deformylase [Flavobacteria bacterium MS024-3C]
 gi|225005222|gb|EEG43174.1| peptide deformylase [Flavobacteria bacterium MS024-3C]
          Length = 196

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++V+  I   + ++ +LI+NM E MY   G+GLAA QIG+  RL VI
Sbjct: 1   MILPIVAYGDPVLKKVANAIAADHPNLESLIENMWETMYHAHGVGLAAPQIGLPIRLFVI 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A  ++              VFIN  I   + +   + EGCLSIPD R DV R   
Sbjct: 61  DATPFADDEDLTQSEQDALKNFKAVFINATITEETGEEWTFNEGCLSIPDVREDVIRKPK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D   +      DGL+A  +QHE DH+ GILF D LS LK+ ++  ++S + + +
Sbjct: 121 ITITYQDETFKTHTKTFDGLVARVIQHEYDHIEGILFTDKLSSLKKRILKGRLSNISKGK 180


>gi|40063276|gb|AAR38094.1| polypeptide deformylase [uncultured marine bacterium 578]
          Length = 165

 Score =  193 bits (492), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 64/150 (42%), Positives = 95/150 (63%), Gaps = 3/150 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PD  LR +++P+  +NSDI   + +M E MY   GIGLAA Q+    R++VI
Sbjct: 1   MILDILKYPDKRLRTIAKPVVSVNSDIKKQVKDMFETMYDAPGIGLAATQVNFHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +      P   INP+II  S +   ++EGCLS+PDY  +VKR+  I V  ++ +   
Sbjct: 61  DISE--DCNQPFCLINPEIIEKSGEIE-WEEGCLSVPDYYENVKRANKIKVCALNEHGNT 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I A+ +LA C+QHE+DHLNGILF+DHLS
Sbjct: 118 FDIEANEMLAICIQHEMDHLNGILFVDHLS 147


>gi|320355330|ref|YP_004196669.1| peptide deformylase [Desulfobulbus propionicus DSM 2032]
 gi|320123832|gb|ADW19378.1| peptide deformylase [Desulfobulbus propionicus DSM 2032]
          Length = 168

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +P P+LR+ +  I   + ++  LI++M + MY+  G+GLAA QIGV  +LV+
Sbjct: 1   MAIREIITYPHPVLRQKAEKITVFDQELATLIEDMADTMYNAPGVGLAANQIGVARQLVL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     + +N +V INP+I +  +     +EGCLS+ +    VKR   I V  +D    
Sbjct: 61  VDRSTKDNERNYLVLINPEI-SAGEGSVTDEEGCLSVIECYDKVKRFKKIHVTALDREGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                A+   A  +QHE+DHL G LFID LS
Sbjct: 120 PLEFDAEDRFARIIQHEVDHLLGTLFIDRLS 150


>gi|288801322|ref|ZP_06406776.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331705|gb|EFC70189.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 187

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V++ I     ++  LI NM E M + DGIGLAA QIG   RL VI
Sbjct: 1   MILPIYVYGQPVLRKVAQDITPDYPELKELIANMFETMDNADGIGLAAPQIGRSIRLSVI 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL         ++     FINP I+   ++      +EGCLSIP    +V R   I V++
Sbjct: 61  DLDVLSEYYPEYKGFRKAFINPHILEVDEESEMLTSEEGCLSIPGIHENVDRRTRIHVKW 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           MD        + +G LA  +QHE DHL+G+LF D +S L++ ++  K++ + + +
Sbjct: 121 MDEEFTEHDEWIEGYLARVMQHEFDHLDGVLFTDRISPLRKQLVKNKLTAMSKGK 175


>gi|257469368|ref|ZP_05633462.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185]
 gi|317063614|ref|ZP_07928099.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185]
 gi|313689290|gb|EFS26125.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185]
          Length = 173

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 2/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR  +  +E ++ +I  ++ +M E MY   G+GLAA QIG+  R++V+
Sbjct: 1   MIYEIKKYGDPVLREKTVEVETVDDNIREILQDMAETMYDKKGVGLAAPQIGISKRMLVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D          +V  NP I   +++   ++EGCLSIP     V+R A I V Y++   + 
Sbjct: 61  DWSGEGEALRKVV--NPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIRVDYLNEKGEK 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL  +LF+D +S + + M+TKK+  L + 
Sbjct: 119 VTEELEGFPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQALKKE 165


>gi|114330413|ref|YP_746635.1| peptide deformylase [Nitrosomonas eutropha C91]
 gi|114307427|gb|ABI58670.1| peptide deformylase [Nitrosomonas eutropha C91]
          Length = 168

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +++  +  +  +I  L  NM E MY+  G+GLAA Q+ V  R+VV
Sbjct: 1   MAILNILRYPDERLHKIAAVVPSVTREIRILASNMAETMYAAAGVGLAATQVDVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R   +V INP+II  +      QEGCLS+P     V R+  ITVR  D + +
Sbjct: 61  IDTSET--RDELLVLINPEIIASTGKSET-QEGCLSVPGIFDKVSRAEQITVRATDIDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + A GLLA C+QHE+DHL G +F+++LS  K+  I  K+ K  +
Sbjct: 118 SFEMDATGLLAVCIQHEMDHLIGKVFVEYLSPFKQSRILSKLKKQAR 164


>gi|294782531|ref|ZP_06747857.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
 gi|294481172|gb|EFG28947.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
          Length = 174

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 101/169 (59%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + D +L+++++ +E  +IN +    +D+M+E MY TDGIGLAA Q+GV  R+ 
Sbjct: 1   MVFEIRKYGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V +  +   RK     INP I   +++   ++EGCLS+P     V+R   + + Y++ N 
Sbjct: 61  VCEDGNRKIRK----IINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVKLNYLNENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+ LLA  +QHE DHLNGILF++ +S + + +I KK++ + + 
Sbjct: 117 ETVEEIAEDLLAVVVQHENDHLNGILFVEKISPIAKRLIAKKLANMKKE 165


>gi|212703762|ref|ZP_03311890.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098]
 gi|212672730|gb|EEB33213.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098]
          Length = 170

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +P   L+    P+ +I  +I  L  +MLE MY   G+GLAA Q+G   R++V+
Sbjct: 1   MILDIVTYPAASLKEKCVPVTEITDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQ 120
           D       K P V INP++    +     QEGCLS+P +YRADV+R+  + +RYMD + +
Sbjct: 61  DPAAQDEEKQPRVVINPELTLSEETVLSRQEGCLSVPLNYRADVQRAERVHLRYMDLDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 +G  A  +QHE DHL+G LFID + RL+R +   ++ K ++ +
Sbjct: 121 IVEEDLEGFAAIVIQHEADHLDGTLFIDRIGRLRRSLYDTRVKKWLKRK 169


>gi|313886414|ref|ZP_07820134.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924130|gb|EFR34919.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 188

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 6/175 (3%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M K  P+ ++  P+LR +S  I     ++  LI +M + MY +DG+GLAA QIG   RL 
Sbjct: 1   MAKTLPIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQ 60

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           VID    A          +V IN  + + S++     EGCLS+P     V R   I V Y
Sbjct: 61  VIDATPLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPKSIVVDY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           M+   + Q +   G  A  +QHE DHL+G LF+DH+S +++ MI KK+  + + R
Sbjct: 121 MNEQFEPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175


>gi|323493448|ref|ZP_08098570.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
 gi|323312271|gb|EGA65413.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
          Length = 167

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 111/168 (66%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  ++ ++S +  LID+ML+ +Y+T +GIGLAA+Q+G    +V
Sbjct: 1   MAVLDILTAPDPRLKVTAEKVQDVSS-VQTLIDDMLDTLYATDNGIGLAAIQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL +  +R  P++ +NP++++ SD  ++ QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  IIDLSE--NRDEPLILVNPEVVSGSD-KAMGQEGCLSVPDYYADVERFTSVVVSALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               + +D  LA  +QHE+DHL+G LFID+LS LKR M  KK+ K ++
Sbjct: 117 NQITLESDDFLAIVMQHEIDHLSGNLFIDYLSPLKRQMAMKKVKKYLK 164


>gi|237744608|ref|ZP_04575089.1| polypeptide deformylase [Fusobacterium sp. 7_1]
 gi|256027377|ref|ZP_05441211.1| polypeptide deformylase [Fusobacterium sp. D11]
 gi|260494468|ref|ZP_05814598.1| peptide deformylase [Fusobacterium sp. 3_1_33]
 gi|289765343|ref|ZP_06524721.1| polypeptide deformylase [Fusobacterium sp. D11]
 gi|229431837|gb|EEO42049.1| polypeptide deformylase [Fusobacterium sp. 7_1]
 gi|260197630|gb|EEW95147.1| peptide deformylase [Fusobacterium sp. 3_1_33]
 gi|289716898|gb|EFD80910.1| polypeptide deformylase [Fusobacterium sp. D11]
          Length = 174

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 102/169 (60%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA Q+GV  R+ 
Sbjct: 1   MVYEIKRYGEEVLKQIAKEVEFNEINDEFRKFLDDMVETMYETDGVGLAAPQVGVSKRVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D  +   RK     INP ++  +++   ++EGCLS+P     V+R   + ++Y++ N 
Sbjct: 61  VCDDGNGVVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILF++ +S + + +I KK++ + + 
Sbjct: 117 EEVEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANIKKE 165


>gi|317967982|ref|ZP_07969372.1| peptide deformylase [Synechococcus sp. CB0205]
          Length = 200

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 63/151 (41%), Positives = 92/151 (60%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR  +R I K++  +  L  +ML  MY+  GIGLAA QIGV  +L+VIDL+
Sbjct: 31  DIHKLGDEVLREPARRIGKVDDAVRKLATDMLVSMYAAKGIGLAAPQIGVNQQLLVIDLE 90

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP+I +       Y+EGCLSIP    DV R + + V Y D   + + +
Sbjct: 91  LEDPSSPPLVLINPEITSVGGGLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDAFGRPKRM 150

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            ADGL+A C+QHE+DHLNG+LF+D ++  ++
Sbjct: 151 KADGLMARCIQHEMDHLNGVLFVDRVTDEEK 181


>gi|282858813|ref|ZP_06267958.1| peptide deformylase [Prevotella bivia JCVIHMP010]
 gi|282588382|gb|EFB93542.1| peptide deformylase [Prevotella bivia JCVIHMP010]
          Length = 186

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V++ I     D+  LI NM E   ++DG+GLAA QIG   R+VVI
Sbjct: 1   MILPIYTYGQPVLRKVAQDIPTDYPDLQELIQNMFETCSASDGVGLAAPQIGKSIRVVVI 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL         ++     FIN  I+ F D +  + +EGCLS+P     V+R+  + + ++
Sbjct: 61  DLDVMSDAFPEYKDYKHAFINGHILEFDDTETEIMEEGCLSLPGLHEKVERAKRVHIEWL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N QH   + DG LA  +QHE DHL G +F D +S  ++ MI  KM  ++Q +
Sbjct: 121 DENLQHHDEWVDGFLARVIQHEFDHLEGKVFTDRVSPFRKQMIKNKMKAMLQGK 174


>gi|332299918|ref|YP_004441839.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176981|gb|AEE12671.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707]
          Length = 188

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 6/175 (3%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M K  P+ ++  P+LR +S  I     ++  LI +M + MY +DG+GLAA QIG   RL 
Sbjct: 1   MAKTLPIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQ 60

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           VID    A          +V IN  + + S++     EGCLS+P     V R   I V Y
Sbjct: 61  VIDATPLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPESIVVDY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           M+   + Q +   G  A  +QHE DHL+G LF+DH+S +++ MI KK+  + + R
Sbjct: 121 MNEQFEPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175


>gi|317503055|ref|ZP_07961134.1| peptide deformylase [Prevotella salivae DSM 15606]
 gi|315665828|gb|EFV05416.1| peptide deformylase [Prevotella salivae DSM 15606]
          Length = 187

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V++ I      +  LI +M E M +++G+GLAA QIG   R+VVI
Sbjct: 1   MILPIYIYGQPVLRKVAQDISPDYPQLKELISDMFESMTASNGVGLAAPQIGKDIRVVVI 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL         ++     FIN  ++   DD      +EGCLS+P     V R   I V+Y
Sbjct: 61  DLDVLSDDFPEYKGFRKAFINAHVLEVDDDSPKETLEEGCLSLPGLSEKVTRPTRIHVKY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D +      + +G LA  +QHE DHL G +FID +  L++ MI  K+  +++ +
Sbjct: 121 QDEDFVEHDEWVEGYLARVMQHEFDHLEGKMFIDRIPPLRKQMIYSKLKAMLKGK 175


>gi|227488838|ref|ZP_03919154.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542166|ref|ZP_03972215.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091260|gb|EEI26572.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181995|gb|EEI62967.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 177

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L +  DP+L   + P++++ +    L+ +MLE M S  G+GLAA Q+GVL R+ V 
Sbjct: 1   MIRKLRLMGDPVLVSEAEPVDEVTASTKTLVSDMLETMDSAGGVGLAANQVGVLQRVFVY 60

Query: 62  DLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D        NP         INP      ++  + QEGCLSIPD  AD +R   + V  +
Sbjct: 61  DCPVDDSDPNPDREYKRGAIINPVWEPVGEEMQLGQEGCLSIPDVYADTERYMNVHVTGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           D N  +    A GLLA C+QHE DHL+G+LFI  L++ +R    K++ 
Sbjct: 121 DENGDNVDFEATGLLARCIQHETDHLDGVLFIKRLTKERRKEAMKEIR 168


>gi|3023625|sp|P94601|DEF_FREDI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1772503|emb|CAA71353.1| polypeptide deformylase [Tolypothrix sp. PCC 7601]
          Length = 187

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/143 (44%), Positives = 93/143 (65%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I K++ ++  LI +ML+ MYS DGIGLAA Q+G+  +L+VIDL+    
Sbjct: 22  LGDRVLRQPAKRIAKVDDELRQLIRDMLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPDNP 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+V INP I   S +  V QEGCLSIP+   DVKR   + + Y D N + + + A  
Sbjct: 82  ANPPLVLINPTIKQVSKEICVAQEGCLSIPNVYMDVKRPEVVEIAYKDENGRPKTLKATD 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA C+QHE+DHLNG++F+D + 
Sbjct: 142 LLARCIQHEMDHLNGVVFVDRVD 164


>gi|198282168|ref|YP_002218489.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667290|ref|YP_002424533.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246689|gb|ACH82282.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519503|gb|ACK80089.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 167

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  L+ V+RPI +++  I  L D+M E MY   GIGLAA Q+   +RL+V
Sbjct: 1   MPLLKILEIPDARLKDVARPIARVDKQIQQLADDMAETMYDAPGIGLAAPQVAAGHRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +  +R + +  +NP+II  + +    +EGCLS+P     V+R+  +TVR      +
Sbjct: 61  VDVSE--NRNDLLTLLNPEIIARTGE-EEMKEGCLSVPGVLETVRRAEKVTVRATTVQGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA CLQHE+DHL+G LFIDHLSRLK+ +I +K  K V+L D
Sbjct: 118 TVELEADGLLAVCLQHEIDHLDGTLFIDHLSRLKQSLIRRKAEKRVRLGD 167


>gi|193213195|ref|YP_001999148.1| peptide deformylase [Chlorobaculum parvum NCIB 8327]
 gi|238692654|sp|B3QPU5|DEF_CHLP8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|193086672|gb|ACF11948.1| peptide deformylase [Chlorobaculum parvum NCIB 8327]
          Length = 187

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 97/170 (57%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + DP+L   ++P++ ++S I  LI +M + MY   GIGLAA Q+G   RL+V+
Sbjct: 1   MILPINTYSDPVLTAKAKPLKGVDSSIRELIADMFDSMYKAPGIGLAAPQVGHSLRLLVV 60

Query: 62  DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D+       +  PMV INP+I++ +   +  +EGCLS+P    DV R + IT+ Y D   
Sbjct: 61  DISTIKEYADYKPMVVINPRIVSVAG-RNAMEEGCLSVPGVAGDVVRPSKITLHYRDEKF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +        ++A  LQHE+DHL+G LF+D + +  R  + K +  + Q R
Sbjct: 120 EEHTEEFSDMMARVLQHEIDHLDGTLFVDRMEKRDRRKVQKTLDAIKQGR 169


>gi|220912934|ref|YP_002488243.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
 gi|219859812|gb|ACL40154.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
          Length = 190

 Score =  192 bits (490), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPITIWGEPVLHRRASEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII--TFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +     S    D    +EGCLS P  +  +KR+ +  V   
Sbjct: 61  YKYANDDDAPASGVVVNPVLTLSKISGAAPDPDEEEEGCLSFPGDQYPLKRAEWARVEGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           D N Q     A G  A  +QHE DHL+G L+++ L
Sbjct: 121 DGNGQPVKFEATGWFARVIQHEYDHLDGKLYVNRL 155


>gi|260432736|ref|ZP_05786707.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416564|gb|EEX09823.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 164

 Score =  192 bits (490), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  + P+ +I  +I  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTVRPCLPWPDKRLRTKAEPVTEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D    A R   +   NP+I+  S +   + E   ++P   A +KR   +TVR+++   +
Sbjct: 61  VD--GSAERGRAVRLANPEILHSSIELREHDEASPNLPGVSAKIKRPRAVTVRFLNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                  G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  K
Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKK 162


>gi|221054422|ref|XP_002258350.1| formylmethionine deformylase [Plasmodium knowlesi strain H]
 gi|193808419|emb|CAQ39122.1| formylmethionine deformylase, putative [Plasmodium knowlesi strain
           H]
          Length = 242

 Score =  192 bits (490), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V++PDP+LR+    +   + ++  L+ +M  VMY + G+GLAA Q+ +  R++V + L 
Sbjct: 68  IVLYPDPVLRKKCNEVVNFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISMRIIVWNALY 127

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   ++N  VFINP I+  S   S   EGCLS PD    V R   +++ Y D +    + 
Sbjct: 128 EKKKKENERVFINPSIVEPSLIRSKLVEGCLSFPDIEGKVDRPRVVSISYYDLDGNKHLK 187

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ A   QHE DHL+GILFID  S+ ++  +  K++++++
Sbjct: 188 ILKGIHARIFQHEYDHLDGILFIDRFSQSEKHKVRAKLNEMIR 230


>gi|83941567|ref|ZP_00954029.1| peptide deformylase [Sulfitobacter sp. EE-36]
 gi|83847387|gb|EAP85262.1| peptide deformylase [Sulfitobacter sp. EE-36]
          Length = 153

 Score =  192 bits (490), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 70/148 (47%), Positives = 97/148 (65%), Gaps = 1/148 (0%)

Query: 22  EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMVFINPKI 80
             +  ++ +L D+ML  MY   GIGLAA QIGV+ RL+V+D  ++      P+V  NP+I
Sbjct: 2   TDMTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGETPRPLVMFNPEI 61

Query: 81  ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           I  SD  + Y+EGCLSIP+  ADV R A + VR++D +   Q      L ATC+QHE+DH
Sbjct: 62  IAASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDH 121

Query: 141 LNGILFIDHLSRLKRDMITKKMSKLVQL 168
           L+G LFID+L  +KR MIT+KM+KL + 
Sbjct: 122 LDGKLFIDYLKPMKRQMITRKMTKLKRE 149


>gi|91225452|ref|ZP_01260574.1| peptide deformylase [Vibrio alginolyticus 12G01]
 gi|91189815|gb|EAS76088.1| peptide deformylase [Vibrio alginolyticus 12G01]
          Length = 168

 Score =  192 bits (490), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 110/170 (64%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  +++ I  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDVST-IQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D   R +P++ +NP++++  ++ ++ QEGCLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISD--ERNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +   LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 NPITIESGEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKSQ 166


>gi|258647932|ref|ZP_05735401.1| peptide deformylase [Prevotella tannerae ATCC 51259]
 gi|260851771|gb|EEX71640.1| peptide deformylase [Prevotella tannerae ATCC 51259]
          Length = 185

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 10/176 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V++ IE     +  LI++M E M  +DG+GLAA QIG   R++VI
Sbjct: 1   MILPIYTYGQPVLRKVAQDIEADFPGLEQLIEDMYETMDKSDGVGLAAPQIGKAIRVIVI 60

Query: 62  -------DLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVR 113
                  D  ++A  ++   +INP II F D + S  +EGCLS+P     VKR   I V+
Sbjct: 61  SLDVLKEDFPEYAGFRH--AYINPHIIEFDDSEISTLEEGCLSLPGIHEPVKRPTRIHVQ 118

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Y D N +    + +G LA  +QHE+DHL G +F D +S L++ M+  K++ + + +
Sbjct: 119 YRDENFEPHDEWVEGYLARVMQHEIDHLEGHVFTDRISPLRKQMVKNKLNAIRKGK 174


>gi|86131930|ref|ZP_01050527.1| peptide deformylase [Dokdonia donghaensis MED134]
 gi|85817752|gb|EAQ38926.1| peptide deformylase [Dokdonia donghaensis MED134]
          Length = 196

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+L++ ++ I     ++  L++NM E MY   G+GLAA Q+G+  R+ ++
Sbjct: 1   MILPIVAYGSPVLKKKAKDITPEYPNLSELLENMYETMYGAHGVGLAAPQVGLPIRIFLV 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A  ++               FIN +I+    +   + EGCLSIP    DV R   
Sbjct: 61  DTTPFADDESFTPEEQKQLSSFKKTFINAEILEEEGEEWAFSEGCLSIPGINEDVFRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T++Y D N +      +GL+A  +QHE DH++GILF D LS LK+ +I  K++ + + +
Sbjct: 121 VTIKYQDENFKEHTETYEGLIARVIQHEYDHIDGILFTDKLSSLKKRLIKGKLANISKGK 180


>gi|269102516|ref|ZP_06155213.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162414|gb|EEZ40910.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 171

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 106/171 (61%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M    ++  P+P LR  +  +  + ++ I  L+D+ML+ MY T +GIGLAA Q+G    +
Sbjct: 1   MAVLEILTEPNPKLRVQAEDVVDVKAEHIQTLVDDMLQTMYETGNGIGLAAPQVGRKEAI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VIDL +   R  P VFINPKI+   ++  V QEGCLS+PDY ADV+R   I +  +D +
Sbjct: 61  IVIDLSE--ERNEPQVFINPKIV-RGENPVVGQEGCLSVPDYYADVERFEKIAITALDRD 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                +  D  LA  LQHE+DHL GILFID+LS LKR M  KK+ K ++ +
Sbjct: 118 GNEINMERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKYLRSQ 168


>gi|126174517|ref|YP_001050666.1| peptide deformylase [Shewanella baltica OS155]
 gi|153000548|ref|YP_001366229.1| peptide deformylase [Shewanella baltica OS185]
 gi|160875185|ref|YP_001554501.1| peptide deformylase [Shewanella baltica OS195]
 gi|217973486|ref|YP_002358237.1| peptide deformylase [Shewanella baltica OS223]
 gi|304408620|ref|ZP_07390241.1| peptide deformylase [Shewanella baltica OS183]
 gi|307305448|ref|ZP_07585196.1| peptide deformylase [Shewanella baltica BA175]
 gi|125997722|gb|ABN61797.1| peptide deformylase [Shewanella baltica OS155]
 gi|151365166|gb|ABS08166.1| peptide deformylase [Shewanella baltica OS185]
 gi|160860707|gb|ABX49241.1| peptide deformylase [Shewanella baltica OS195]
 gi|217498621|gb|ACK46814.1| peptide deformylase [Shewanella baltica OS223]
 gi|304352441|gb|EFM16838.1| peptide deformylase [Shewanella baltica OS183]
 gi|306911751|gb|EFN42176.1| peptide deformylase [Shewanella baltica BA175]
 gi|315267381|gb|ADT94234.1| peptide deformylase [Shewanella baltica OS678]
          Length = 163

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 101/167 (60%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   +   ID+++E MY TD GIGLAA Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAVQGFIDDLIETMYHTDDGIGLAATQVGSTDAII 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D   R  P V INP+I+  S +F V +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSD--GRDQPQVLINPEIVEKSGEF-VGEEGCLSIPGYRAKVSRFEKVKVTALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRKYA 163


>gi|145296738|ref|YP_001139559.1| peptide deformylase [Corynebacterium glutamicum R]
 gi|140846658|dbj|BAF55657.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 193

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++ + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D     +   FINP + T         D    +EGCLS+P       R+ +  V  
Sbjct: 61  YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRAHWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ++   +   + A+G LA C QHE+ HL+G L+ D L    + M  K +  
Sbjct: 121 LNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIKA 170


>gi|312890426|ref|ZP_07749963.1| peptide deformylase [Mucilaginibacter paludis DSM 18603]
 gi|311297196|gb|EFQ74328.1| peptide deformylase [Mucilaginibacter paludis DSM 18603]
          Length = 190

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 6/173 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +K P++ + DP+LRR +  IE      I  L++NM E MY+  G+GLAA Q+G+  RL V
Sbjct: 1   MKYPIIAYGDPVLRRAATNIEPDEYPHIKELVENMFETMYAARGVGLAAPQVGLSMRLFV 60

Query: 61  IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID           +    VFIN K++  + +   + EGCLSIPD R DV R   + + Y 
Sbjct: 61  IDATPFDDDEPELKDFKKVFINAKVLEETGEEWSFNEGCLSIPDIREDVYRKPVVRLSYY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D N +H      GL A  +QHE DH+ G LF D LS L++ +I KK++ + + 
Sbjct: 121 DENWKHHEETFKGLAARVIQHEYDHIEGKLFTDKLSPLRKRLIQKKLTDISKG 173


>gi|184201105|ref|YP_001855312.1| peptide deformylase [Kocuria rhizophila DC2201]
 gi|183581335|dbj|BAG29806.1| peptide deformylase [Kocuria rhizophila DC2201]
          Length = 189

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 5/175 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI   P+L R +  + + ++ +  L+ ++ E M ++ G+GLAA QIGV  R+  
Sbjct: 1   MSIRPIVISGHPVLHRPAARVTEFDAALRTLVADLHETMDASHGVGLAAPQIGVGLRIFT 60

Query: 61  IDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              ++          +NP     KI     D     EGCLS+P     +KR+ ++ +   
Sbjct: 61  YLYENEDGVPPRGTLVNPVLTTGKISEVVPDPDEESEGCLSVPGQAWPLKRADWVRIAGQ 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           D N       A+G  A  +QHE DHL+G L++D L+        K + +     D
Sbjct: 121 DENGDPVAFEANGWFARVMQHEYDHLDGKLYVDRLNPKWSRRARKAIRREEWGTD 175


>gi|152991610|ref|YP_001357331.1| peptide deformylase [Sulfurovum sp. NBC37-1]
 gi|151423471|dbj|BAF70974.1| formylmethionine deformylase [Sulfurovum sp. NBC37-1]
          Length = 174

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 104/175 (59%), Gaps = 8/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PD  L+++SR +   +  + +L+D+M E M + +G+GLAA+Q+GV  R ++I
Sbjct: 1   MVREIVIYPDKRLKQISREVGSFDGALHDLLDDMYETMIARNGVGLAAIQVGVDLRALII 60

Query: 62  DLQDHAH-------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++            ++N +  INP I+   D    +QEGCLS+P    DV+R+  + V Y
Sbjct: 61  NVPLEKEEGEHDQPKENTLEMINPVIVEM-DGKEKFQEGCLSVPGVYEDVERAKHVKVEY 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D N +  II  D  LA  +QHE+DHL+G +FI+ LS LKR    K+ +K  + +
Sbjct: 120 YDRNGEKHIIEDDDFLAIAMQHEIDHLDGKVFIEKLSFLKRKKFEKEWAKRQKAQ 174


>gi|83855044|ref|ZP_00948574.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
 gi|83842887|gb|EAP82054.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
          Length = 153

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/148 (47%), Positives = 97/148 (65%), Gaps = 1/148 (0%)

Query: 22  EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMVFINPKI 80
             +  ++ +L D+ML  MY   GIGLAA QIGV+ RL+V+D  ++      P+V  NP+I
Sbjct: 2   TDMTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGEAPRPLVMFNPEI 61

Query: 81  ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
           I  SD  + Y+EGCLSIP+  ADV R A + VR++D +   Q      L ATC+QHE+DH
Sbjct: 62  IAASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDH 121

Query: 141 LNGILFIDHLSRLKRDMITKKMSKLVQL 168
           L+G LFID+L  +KR MIT+KM+KL + 
Sbjct: 122 LDGKLFIDYLKPMKRQMITRKMTKLKRE 149


>gi|25029133|ref|NP_739187.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|259505872|ref|ZP_05748774.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|39931150|sp|Q8FMD0|DEF2_COREF RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|23494420|dbj|BAC19387.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314]
 gi|259166546|gb|EEW51100.1| peptide deformylase [Corynebacterium efficiens YS-314]
          Length = 193

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   +R + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTREVTEPISELQELIADMYETMEVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            +  D     +   FINP + T         D    +EGCLS+P       R+ +  V  
Sbjct: 61  FNCPDDEGTMHRGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRADWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ++ + +   +   G LA C QHE+ HL+G+++ D L    + +  K +  
Sbjct: 121 LNEDGEEWSMEGTGFLARCFQHEVGHLDGVVYTDTLIGRWKRLAKKTIKA 170


>gi|261419369|ref|YP_003253051.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297530654|ref|YP_003671929.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|319766184|ref|YP_004131685.1| peptide deformylase [Geobacillus sp. Y412MC52]
 gi|261375826|gb|ACX78569.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297253906|gb|ADI27352.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|317111050|gb|ADU93542.1| peptide deformylase [Geobacillus sp. Y412MC52]
          Length = 157

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +PDPIL +   P+   +  +  L+D+M E M + DG+GLAA QIGV  ++ V
Sbjct: 1   MSVLPIVTYPDPILEQPCAPVTAFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R      INP +I    +  V  EGCLS P    +V R+ F+ VR  +   +
Sbjct: 61  IDVGDEHGRIE---LINPVVIEARGE-QVDVEGCLSFPGLFGEVPRAKFVKVRAQNRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A G LA  LQHE+DHL+G+LF   + R
Sbjct: 117 PFTLSATGFLARALQHEIDHLHGVLFTSKVIR 148


>gi|19553932|ref|NP_601934.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|62391575|ref|YP_226977.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|39931164|sp|Q8NM41|DEF2_CORGL RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21325511|dbj|BAC00133.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC
           13032]
 gi|41326917|emb|CAF20761.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032]
          Length = 193

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++ + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D     +   FINP + T         D    +EGCLS+P       R+ +  V  
Sbjct: 61  YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRAHWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ++   +   + A+G LA C QHE+ HL+G L+ D L    + M  K +  
Sbjct: 121 LNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIKA 170


>gi|288817601|ref|YP_003431948.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|288787000|dbj|BAI68747.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|308751198|gb|ADO44681.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
          Length = 169

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 98/169 (57%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ FP P+L+  ++ ++ I+ D+ +++ +M E MY  +G+GLAA QIG+   ++VI
Sbjct: 1   MVREIIKFPHPVLKMPTQKVDVIDKDVQSIVGDMFETMYHAEGVGLAANQIGISLSIMVI 60

Query: 62  DLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D            V INP+++    +   Y+EGCLS P    +V R + + V+ +D N +
Sbjct: 61  DTSKKEDSPLLKAVMINPELLEAEGE-VKYKEGCLSFPGLSVEVSRYSKVKVKALDINGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            ++   +G  A   QHE+DHL GI FID ++ +KR +   K +KL + +
Sbjct: 120 EKLYLLEGFPAIVFQHEMDHLMGITFIDRVNGIKRRLALDKYAKLQKEK 168


>gi|313674138|ref|YP_004052134.1| peptide deformylase [Marivirga tractuosa DSM 4126]
 gi|312940836|gb|ADR20026.1| peptide deformylase [Marivirga tractuosa DSM 4126]
          Length = 185

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 4/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+L+   + I+K   D+  L+D+M E MY+ +G+GLAA QIG   RL VI
Sbjct: 1   MIYPIVAYGHPVLKTKGKDIDKGEIDVKTLVDDMFETMYNANGVGLAAPQIGKSLRLFVI 60

Query: 62  DLQD-HAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           D          P V   FINP+I+    +   ++EGCLSIP+ R DV R   I ++Y D 
Sbjct: 61  DTDPIDDEEDQPKVKQAFINPQILEEEGEEWAFEEGCLSIPNIREDVNRKPTIRIKYFDE 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           N        DG +A  +QHE DH+ GILF DH+S  K+ ++  K++ + + +
Sbjct: 121 NWNEHEKEYDGFVARVIQHEYDHIEGILFTDHVSAFKKRILKGKLANISKGK 172


>gi|328884922|emb|CCA58161.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712]
          Length = 210

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 34  TARPITVVGNPVLHKECKDVTEFDDSLAALIDDMFASQKAAEGVGLAANQIGVDLKVFVY 93

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V +NP +     +        EGCLS+P   A++ R  +  V   D  
Sbjct: 94  DCPDDEGVRHTGVVVNPVLQELPAELRVLDESNEGCLSVPTAYAELARPDYAEVHGQDAQ 153

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M +
Sbjct: 154 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 199


>gi|253583796|ref|ZP_04860994.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725]
 gi|251834368|gb|EES62931.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725]
          Length = 173

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 2/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR  +  +E ++ +I  ++ NM+E MY   G+GLAA Q+G+  R++V+
Sbjct: 1   MIYEIKKYGDPVLREKTVEVETVDDNIREILQNMVETMYDKKGVGLAAPQVGISKRMLVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D          +  INP I   +++   ++EGCLSIP     V+R A I V Y++   + 
Sbjct: 61  DWTGEGEELRKV--INPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIKVDYLNEKGEK 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL  +LF+D +S + + M+TKK+  L + 
Sbjct: 119 ITEELEGFPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQALKKE 165


>gi|323344260|ref|ZP_08084486.1| peptide deformylase [Prevotella oralis ATCC 33269]
 gi|323094989|gb|EFZ37564.1| peptide deformylase [Prevotella oralis ATCC 33269]
          Length = 187

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V++ I     D+  LI +M E + ++DG+GLAA QIG   R+ VI
Sbjct: 1   MILPIYIYGQPVLRKVAKDITPDYPDLEELIKDMFETLTASDGVGLAAPQIGKSIRVAVI 60

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL     +   ++     +INP II   D     + +EGCLSIP     V R + I V+Y
Sbjct: 61  DLDVLSGELPEYKDFRKAYINPHIIEIDDNSKKEIMEEGCLSIPGIHESVTRPSRIHVQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           MD        + DG LA  +QHE DHL+G +F+D LS  ++ M+  K+  L+Q +
Sbjct: 121 MDTAFVQHDEWVDGYLARVMQHEFDHLDGTMFVDRLSPFRKQMVNSKLKALIQGK 175


>gi|296328150|ref|ZP_06870681.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154662|gb|EFG95448.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 174

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 101/169 (59%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ 
Sbjct: 1   MVYEIKKYGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D  +   RK     INP I+  +++   ++EGCLS+P     V+R   + ++Y++   
Sbjct: 61  VCDDGNGVLRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILFI+ +S + + +I KK++ + + 
Sbjct: 117 KEVEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANIKKE 165


>gi|296269346|ref|YP_003651978.1| peptide deformylase [Thermobispora bispora DSM 43833]
 gi|296092133|gb|ADG88085.1| peptide deformylase [Thermobispora bispora DSM 43833]
          Length = 182

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  + P+   + ++  L+ ++ + M   +G GLAA QIGV  R+  
Sbjct: 1   MAIRQIRLFGDPVLRTPAEPVVDFDKELRKLVKDLTDTMLDANGAGLAAPQIGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +    +     +EGCLS P       R+     +  +   +
Sbjct: 61  YNVDGQLG-----HLVNPNLDLSDEMDEEGEEGCLSFPGLSYPTPRAIRAVAKGFNMYGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I    L+A CLQHE DHL+GILFID ++   R +  K + +   
Sbjct: 116 PVTIEGTELMARCLQHETDHLDGILFIDRMNPEHRRLAMKAIREAEW 162


>gi|153836422|ref|ZP_01989089.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
 gi|149750324|gb|EDM61069.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
          Length = 168

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 111/170 (65%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  +++ I  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDVST-IQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D   R +P++ +NP++++  ++ ++ QEGCLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISD--ERNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 SPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166


>gi|218248691|ref|YP_002374062.1| peptide deformylase [Cyanothece sp. PCC 8801]
 gi|257061756|ref|YP_003139644.1| peptide deformylase [Cyanothece sp. PCC 8802]
 gi|218169169|gb|ACK67906.1| peptide deformylase [Cyanothece sp. PCC 8801]
 gi|256591922|gb|ACV02809.1| peptide deformylase [Cyanothece sp. PCC 8802]
          Length = 187

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/147 (40%), Positives = 90/147 (61%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ ++ I K++  I  L   ML+ MYS++GIGLAA Q+GV  +L+V+D  
Sbjct: 18  EIHFLGDRVLRQPAKRIAKVDDTIRQLAKEMLQTMYSSNGIGLAAPQVGVHKQLIVVDCD 77

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +     P++ INP+I  FS +  V +EGCLSIP    DV R   I V + D   + + +
Sbjct: 78  PNDPANQPIILINPQITRFSQELCVVEEGCLSIPGVYLDVTRPKAIEVSFRDEQGKPRKL 137

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
            A  LLA  +QHE+DHLNG++F+D ++
Sbjct: 138 QATDLLARVIQHEMDHLNGVMFVDRVN 164


>gi|83589748|ref|YP_429757.1| peptide deformylase [Moorella thermoacetica ATCC 39073]
 gi|123766806|sp|Q2RK25|DEF_MOOTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|83572662|gb|ABC19214.1| peptide deformylase [Moorella thermoacetica ATCC 39073]
          Length = 155

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/153 (43%), Positives = 98/153 (64%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++   DP+LR  S+P+ KI S++  L+DN+ + MY   G+GLAA QIGVL R++V
Sbjct: 1   MAIHKILTLGDPLLREKSQPVRKITSNVWKLLDNLADTMYDAPGVGLAAPQIGVLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +          INP++I  S +  V  EGCLSIP  + +V R+A +TVR +D + +
Sbjct: 61  VDVGE-----GLTELINPEVIAASGE-EVGAEGCLSIPGAQGEVPRAAVVTVRGLDRHGR 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I A+GL A  LQHE+DHL+GILFID + R 
Sbjct: 115 VREIRAEGLYARALQHEIDHLDGILFIDKVVRW 147


>gi|189184237|ref|YP_001938022.1| peptide deformylase [Orientia tsutsugamushi str. Ikeda]
 gi|238692021|sp|B3CTU1|DEF_ORITI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189181008|dbj|BAG40788.1| methionyl-tRNA deformylase [Orientia tsutsugamushi str. Ikeda]
          Length = 181

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 101/174 (58%), Gaps = 9/174 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L+  PDPIL++V+ P++ +N  I  L+D+MLE MY   G+GLAA Q+ V  R++V
Sbjct: 1   MSILSLITAPDPILKKVASPVDTVNDSIRQLMDDMLETMYHNHGVGLAAPQVAVSKRIIV 60

Query: 61  IDLQDHA---------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +DL               K P+  +NP +   S+  +  +EGCLS+P    +V R   I 
Sbjct: 61  LDLSKVDIKEDNITNSEYKYPLFMVNPIVKAISNQTATAKEGCLSLPKQAIEVSRYHEIQ 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           V Y+D   +   + A+G LA  +QHE+DHL+GIL +D+LS LK++     +SK+
Sbjct: 121 VTYLDYYNKLTTLNAEGWLARAIQHEVDHLDGILLVDYLSNLKKEAALNTLSKI 174


>gi|150016029|ref|YP_001308283.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
 gi|149902494|gb|ABR33327.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
          Length = 152

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/151 (40%), Positives = 92/151 (60%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+  R ++KI+  ++ LI++M E MY  DG+GLAA Q+G+L RL V
Sbjct: 1   MALRNIRKYGDDVLRKKCREVDKIDDRLLTLIEDMKETMYDADGVGLAAPQVGILKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D      P+VFINP+II  S    + +EGCLS+P    +V R  ++  R ++   +
Sbjct: 61  VDIGD-----GPLVFINPEIIETSGS-QIDEEGCLSLPGETEEVMRPNYVRARALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I A+ LLA  + HE DHLNG LFID + 
Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRVK 145


>gi|238063927|ref|ZP_04608636.1| peptide deformylase [Micromonospora sp. ATCC 39149]
 gi|237885738|gb|EEP74566.1| peptide deformylase [Micromonospora sp. ATCC 39149]
          Length = 185

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   ++++  L+ ++ + M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDAELRRLVADLTDTMREQNGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLSIP    D KR   +  +  +    
Sbjct: 61  FDVDDVLG-----HLVNPVLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVVAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I   GL+A C+QHE DHL+G+LF+D L    R    K + +   
Sbjct: 116 PVQIVGTGLMARCVQHETDHLDGVLFVDRLDPAGRKEAMKAIRQAEW 162


>gi|227821802|ref|YP_002825772.1| peptide deformylase [Sinorhizobium fredii NGR234]
 gi|227340801|gb|ACP25019.1| peptide deformylase-like protein [Sinorhizobium fredii NGR234]
          Length = 163

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 99/165 (60%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP+P L   +  + + +S + +L+D++ + M +  GIG+ A  IGVL R+ V
Sbjct: 1   MALRPIIRFPNPALGMSAEMVTRFDSSLRSLVDDLTDTMRAAPGIGITAPHIGVLQRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+L+  A    P  F+NP++I  S++   + EG +S+P    +V+R   I VRY   + +
Sbjct: 61  IELERQAG---PRTFVNPQMIWCSEETERHSEGSVSMPGISEEVERPTSIRVRYQTISGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                A GL+A CLQHE+D L+GI +I  LSRLKR+   K+  KL
Sbjct: 118 TLEEEASGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAVKRFEKL 162


>gi|255008473|ref|ZP_05280599.1| peptide deformylase [Bacteroides fragilis 3_1_12]
 gi|313146202|ref|ZP_07808395.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12]
 gi|313134969|gb|EFR52329.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12]
          Length = 184

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+VVI
Sbjct: 1   MILPIYVYGQPVLRQVAEDITPDYPNLKELIENMFETMDHADGVGLAAPQIGLPVRVVVI 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +L         ++     +IN  I     D    +EGCLS+P     VKR + I VRYMD
Sbjct: 61  NLDVLSEDYPEYKDFRKAYINAHIDVVEGDEVSMEEGCLSLPGIHESVKRGSKIHVRYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|239929017|ref|ZP_04685970.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291437357|ref|ZP_06576747.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291340252|gb|EFE67208.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
          Length = 216

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  R + + + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECRDVTEFDDELRKLVDDMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    +        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPELVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEW 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKEALRQMAE 205


>gi|329961281|ref|ZP_08299447.1| peptide deformylase [Bacteroides fluxus YIT 12057]
 gi|328531946|gb|EGF58763.1| peptide deformylase [Bacteroides fluxus YIT 12057]
          Length = 186

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M + +G+GLAA QIG+  R+V +
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIGNMFETMDNAEGVGLAAPQIGLPIRVVTV 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +L         ++     +IN  I+  + +    +EGCLS+P     VKR   I V+Y+D
Sbjct: 61  NLDVLSEDLPEYKGFRKAYINAHILDVAGEEVSMEEGCLSLPGIHESVKRGDKIHVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N +      +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ L++ +
Sbjct: 121 ENLEEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNALLKGK 173


>gi|284032219|ref|YP_003382150.1| peptide deformylase [Kribbella flavida DSM 17836]
 gi|283811512|gb|ADB33351.1| peptide deformylase [Kribbella flavida DSM 17836]
          Length = 182

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+L   + P+   ++++  L+ ++ + M +  G GLAA QIGV  R+  
Sbjct: 1   MSVQPIRLFGDPVLTTKADPVVDFDAELRRLVADLTDTMQAAPGSGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP++ T S +     EGCLSIP    D +R+  +  +       
Sbjct: 61  YHVDGELG-----HLINPEL-TLSAEQQFGPEGCLSIPGLTFDCRRAERVIAKGFTMYGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             +I    LLA C+QHE DHL+G+LF+D L    R    K + +   
Sbjct: 115 PVVIEGSDLLARCIQHETDHLDGVLFVDRLDTATRKAAMKAIREAEW 161


>gi|53712973|ref|YP_098965.1| peptide deformylase [Bacteroides fragilis YCH46]
 gi|60681185|ref|YP_211329.1| peptide deformylase [Bacteroides fragilis NCTC 9343]
 gi|253563049|ref|ZP_04840506.1| peptide deformylase [Bacteroides sp. 3_2_5]
 gi|265763070|ref|ZP_06091638.1| peptide deformylase [Bacteroides sp. 2_1_16]
 gi|81315745|sp|Q5LEQ9|DEF_BACFN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81690706|sp|Q64VP5|DEF_BACFR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|52215838|dbj|BAD48431.1| peptide deformylase [Bacteroides fragilis YCH46]
 gi|60492619|emb|CAH07391.1| putative peptide deformylase [Bacteroides fragilis NCTC 9343]
 gi|251946825|gb|EES87107.1| peptide deformylase [Bacteroides sp. 3_2_5]
 gi|263255678|gb|EEZ27024.1| peptide deformylase [Bacteroides sp. 2_1_16]
 gi|301162674|emb|CBW22221.1| putative peptide deformylase [Bacteroides fragilis 638R]
          Length = 184

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+VVI
Sbjct: 1   MILPIYVYGQPVLRQVAEDITVDYPNLKELIENMFETMDHADGVGLAAPQIGLPIRVVVI 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +L         ++     +IN  I     +    +EGCLS+P     VKR + I VRYMD
Sbjct: 61  NLDVLSEDYPEYKDFRKAYINAHIDVVEGEEVSMEEGCLSLPGIHESVKRGSKIHVRYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|288925815|ref|ZP_06419746.1| peptide deformylase [Prevotella buccae D17]
 gi|288337470|gb|EFC75825.1| peptide deformylase [Prevotella buccae D17]
          Length = 186

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V+  I      +  LI +M E + +++G+GLAA QIG   R+ VI
Sbjct: 1   MILPIYIYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVI 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL         ++     +INP I+ F +       +EGCLSIP    +V R   I V+Y
Sbjct: 61  DLDVLSDDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D +      + +G LA  +QHE DHL+G +F+D +S L++ +I  K+  +++ +
Sbjct: 121 RDTDFVEHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILKGK 175


>gi|11320966|gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]
          Length = 273

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 90/162 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 83  IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              L A   QHE DHL G+LF D ++    D I +++  L +
Sbjct: 203 LSSLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 244


>gi|302206252|gb|ADL10594.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis C231]
 gi|302330810|gb|ADL21004.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis 1002]
 gi|308276494|gb|ADO26393.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis I19]
          Length = 169

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DP+L   +  +   + ++ NL+ +MLE M +  G+GLAA Q+GV  R+ V
Sbjct: 1   MTIRDIRFFGDPVLTTRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   H         INP      +D  +  EGCLSIPD + D  R   + V   D   +
Sbjct: 61  YDCS-HIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GL++ C+QHE DHL+G+LF+  L +  R      + +
Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHRKDAMATIRQ 163


>gi|254229199|ref|ZP_04922618.1| peptide deformylase [Vibrio sp. Ex25]
 gi|262395549|ref|YP_003287402.1| peptide deformylase [Vibrio sp. Ex25]
 gi|151938284|gb|EDN57123.1| peptide deformylase [Vibrio sp. Ex25]
 gi|262339143|gb|ACY52937.1| peptide deformylase [Vibrio sp. Ex25]
          Length = 168

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 111/170 (65%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  +++ +  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDVST-VQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D   R +P++ +NP++++  ++ ++ QEGCLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISD--ERNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 NPMTIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166


>gi|37521797|ref|NP_925174.1| peptide deformylase [Gloeobacter violaceus PCC 7421]
 gi|39930959|sp|Q7NIF5|DEF2_GLOVI RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|35212795|dbj|BAC90169.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
          Length = 187

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/146 (45%), Positives = 92/146 (63%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+ S+ I  IN ++  L   ML+ MYS DGIGLAA Q+GV  R++V+D+  
Sbjct: 19  IHTLGDRVLRQGSKQISGINDEVRKLAQQMLQTMYSADGIGLAAPQVGVNKRMIVVDIDP 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               + P+V INP I  FS D +V QEGCLS+P   ADV+R   +   Y D N +   + 
Sbjct: 79  ENAARPPLVLINPLIKQFSSDLAVDQEGCLSVPSIYADVRRPERVVATYRDLNGRPVTLE 138

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
           A GLLA C+QHE+DHL+G+LF+D + 
Sbjct: 139 ATGLLARCIQHEIDHLDGVLFVDRVE 164


>gi|262067438|ref|ZP_06027050.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693]
 gi|291378801|gb|EFE86319.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693]
          Length = 174

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 101/169 (59%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + D IL+++++ +E  +IN +    +D+M+E MY TDGIGLAA Q+GV  R+ 
Sbjct: 1   MVFEIRKYGDDILKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D      RK     INP I   +++   ++EGCLS+P     V+R   + ++Y++ N 
Sbjct: 61  VCDDGTGKIRK----LINPIIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYINENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+ LLA  +QHE DHLNGILF++ +S + + +I KK++ + + 
Sbjct: 117 EAVEEIAEDLLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANMKKE 165


>gi|21219721|ref|NP_625500.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|289773087|ref|ZP_06532465.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|9716195|emb|CAC01493.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|289703286|gb|EFD70715.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 217

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 78/167 (46%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +     ++  L++++   MY+  G+GLAA Q+G   R+ V D
Sbjct: 51  VRPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYD 110

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 111 CPDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPV 170

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   G  A CLQHE DHL G ++ D L+  +   + +++++    R
Sbjct: 171 TVRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVARASWHR 217


>gi|261880357|ref|ZP_06006784.1| peptide deformylase [Prevotella bergensis DSM 17361]
 gi|270332901|gb|EFA43687.1| peptide deformylase [Prevotella bergensis DSM 17361]
          Length = 187

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V++ I      +  LID+M E M ++ G+GLAA QIG   R+VVI
Sbjct: 1   MILPIYTYGHPVLRKVAQDIPTDYPGLSQLIDDMFETMDASSGVGLAAPQIGKSVRVVVI 60

Query: 62  DL----QDHAHRKN-PMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +L    +D+    +    +INP II      +    +EGCLS+P     V R + I V+Y
Sbjct: 61  NLDVLKEDYPEYADFRHAYINPHIIEVDKKSEKVSMEEGCLSVPGLSEKVVRYSRIRVQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +D   Q    + +G LA  +QHE DHL G++++D ++ L++ +I  K+  ++Q +
Sbjct: 121 LDEELQPHDEWVEGYLARVMQHEFDHLEGVMYVDRITPLRKQLIRNKLKGIMQGK 175


>gi|237740379|ref|ZP_04570860.1| polypeptide deformylase [Fusobacterium sp. 2_1_31]
 gi|229422396|gb|EEO37443.1| polypeptide deformylase [Fusobacterium sp. 2_1_31]
          Length = 174

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 101/169 (59%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + D +L+++++ +E  +IN +    +D+M+E MY TDGIGLAA Q+GV  R+ 
Sbjct: 1   MVFEIRKYGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYKTDGIGLAAPQVGVSKRVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V   +D   +      INP I   +++   ++EGCLS+P     V+R   + ++Y++ N 
Sbjct: 61  V--CEDGTGKIRK--LINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYLNENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+ LLA  +QHE DHLNGILF++ +S + + +I KK++ + + 
Sbjct: 117 EAVEEIAEELLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANMKKE 165


>gi|145594411|ref|YP_001158708.1| peptide deformylase [Salinispora tropica CNB-440]
 gi|145303748|gb|ABP54330.1| peptide deformylase [Salinispora tropica CNB-440]
          Length = 186

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  L+ ++++ M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLIDTMREQNGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLS+P    D KR   +  +  +    
Sbjct: 61  FDVDDVVG-----HLVNPVLEFPDAEEQDGPEGCLSLPGLYFDTKRRQNVVAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I   GL+A C+QHE DHL+G+LFID L    R    K++ +   
Sbjct: 116 PMQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKEIRRAEW 162


>gi|261252741|ref|ZP_05945314.1| peptide deformylase [Vibrio orientalis CIP 102891]
 gi|260936132|gb|EEX92121.1| peptide deformylase [Vibrio orientalis CIP 102891]
          Length = 167

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 110/168 (65%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  ++ +++ +  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLKVKAEKVQDLST-VQTLIDDMLETLYATDNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL +   R  P++ +NP++++ SD  ++ QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  IIDLSES--RDEPLILVNPEVVSGSD-KALGQEGCLSVPDYYADVERFTSVVVSALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   I +D  LA  +QHE+DHL+G LFID+LS LKR M  KK+ K V+
Sbjct: 117 KPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKRKMAMKKVKKYVK 164


>gi|324997314|ref|ZP_08118426.1| peptide deformylase [Pseudonocardia sp. P1]
          Length = 193

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + +  DP+L R +RP+E+++  I  L+D+M E M + +G+GLAA Q+GV  RL V
Sbjct: 1   MTVLRIRMVGDPVLHRPTRPVEQVDDGIRTLVDDMFETMAAANGVGLAANQVGVDLRLFV 60

Query: 61  IDLQDHAHR-KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D   R     + +NP + T        D    +EGCLS+P       R+ +  V  
Sbjct: 61  YDCPDEETRTMRRGLVVNPVLETSERPQVMPDPDDDEEGCLSVPGESYPTGRADWARVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            D + +   +   G  A CLQHE DHL+G L++D L   +     KKM K
Sbjct: 121 TDLDGEPVDVEGRGFFARCLQHETDHLDGHLYLDRLMG-RNQKAAKKMLK 169


>gi|114047714|ref|YP_738264.1| peptide deformylase [Shewanella sp. MR-7]
 gi|113889156|gb|ABI43207.1| peptide deformylase [Shewanella sp. MR-7]
          Length = 163

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   I   ID+++E MY TD GIGLA+ Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +  +R  P+V INP+I+  S ++ V +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSE--NRDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVSRFEKVKVTALDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRKYA 163


>gi|117920762|ref|YP_869954.1| peptide deformylase [Shewanella sp. ANA-3]
 gi|117613094|gb|ABK48548.1| peptide deformylase [Shewanella sp. ANA-3]
          Length = 163

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   I   ID+++E MY TD GIGLA+ Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  P+V INP+I+  S ++ V +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSET--RDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVTRFEKVKVTALDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRKYA 163


>gi|238924698|ref|YP_002938214.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|259645181|sp|C4ZEV9|DEF_EUBR3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238876373|gb|ACR76080.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|291526147|emb|CBK91734.1| peptide deformylase [Eubacterium rectale DSM 17629]
 gi|291527119|emb|CBK92705.1| peptide deformylase [Eubacterium rectale M104/1]
          Length = 158

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 91/151 (60%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+L +V R + ++   I+ LID+MLE MY  +G+GLAA Q+G+L R+VV
Sbjct: 1   MALRTIRVEGDPVLGKVCREVTEVTPKIVTLIDDMLETMYEANGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+II  SD      EGCLS+P     V R  ++  R+M  +  
Sbjct: 61  IDVGE-----GPIVMINPEIIE-SDGEQTGDEGCLSVPGKAGQVTRPNYVKARFMGEDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  + LLA C+ HELDHL+G L+++ + 
Sbjct: 115 EYEIEGEELLARCICHELDHLDGHLYVEKVE 145


>gi|297192182|ref|ZP_06909580.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720173|gb|EDY64081.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 214

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 38  TSRPITVVGNPVLHKECKDVTEFDDKLAALIDDMFASQKTAEGVGLAANQIGVDLKVFVY 97

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +   + +  V     EGCLS+P   A + R  +  VR  D  
Sbjct: 98  DCPDDEGVRHTGVVCNPVLEELAPEQRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 157

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 158 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 203


>gi|157803421|ref|YP_001491970.1| peptide deformylase [Rickettsia canadensis str. McKiel]
 gi|166198522|sp|A8EXV2|DEF_RICCK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157784684|gb|ABV73185.1| peptide deformylase [Rickettsia canadensis str. McKiel]
          Length = 175

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S  + ++       +D+ML+ MY  D  GLAAVQ+G+L R++V
Sbjct: 1   MSILPIVTAPDERLKQKSHRVLEVTDQTRKFMDDMLKTMYHEDAAGLAAVQVGILKRILV 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   + P     +  +NP II  S++     EGC+S+P  R +V R   I ++Y+
Sbjct: 61  IDIKDHDPVERPKDFYPLFIVNPDIIDKSEELVTANEGCISVPRQRVEVARPESIKIKYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL
Sbjct: 121 DYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSSLKRDVVLRKLKKL 170


>gi|288928223|ref|ZP_06422070.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331057|gb|EFC69641.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 187

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 99/175 (56%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+   +LR+V++ I     ++  LI NM E M ++DGIGLAA QIG+  RL+V+
Sbjct: 1   MILPVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVV 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL         ++     FINP I+   +       +EGCLS+P     V R   I ++Y
Sbjct: 61  DLDVLAETYPEYKGYRKAFINPHIVEIDEQSPTESLEEGCLSLPGIHEKVTRHTRIRMQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +D + +    + +G L   LQHE+DHL+GILF DHLS  ++ +I  K+  L+Q +
Sbjct: 121 VDEDLKPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQGK 175


>gi|19704492|ref|NP_604054.1| polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|23396540|sp|Q8REF0|DEF_FUSNN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|19714766|gb|AAL95353.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 174

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 101/169 (59%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ 
Sbjct: 1   MVYKIKKYGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D  +   RK     INP I+  +++   ++EGCLS+P     V+R   + ++Y++   
Sbjct: 61  VCDDGNGVLRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILFI+ +S + + +I KK++ + + 
Sbjct: 117 KEVEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANIKKE 165


>gi|182436096|ref|YP_001823815.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776722|ref|ZP_08235987.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1]
 gi|178464612|dbj|BAG19132.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657055|gb|EGE41901.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1]
          Length = 212

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECKDVTEFDDALARLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +   + +        EGCLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGVRHTGVICNPVLEELAPEARVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M +
Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201


>gi|330995383|ref|ZP_08319293.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841]
 gi|329575878|gb|EGG57402.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841]
          Length = 185

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 6/173 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  F  P+LR+V+  I     ++  LIDNM E +  ++GIGLAA QIG+  RLVVI
Sbjct: 1   MVLPIYTFGQPVLRKVAEDITPDYPELKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVI 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +L         ++     FINP I+ + D +    +EGCLS+P     V+R   I V Y+
Sbjct: 61  NLDLISDDLPEYKGFVHAFINPHILEYDDAETDSMEEGCLSLPGIHEPVRRPTRIRVSYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D   Q    + +G LA  +QHE DHL+G +F+DHLS L++ M+  K+  L++ 
Sbjct: 121 DEVFQPHDEWVEGYLARVMQHEFDHLDGKMFVDHLSMLRKQMVKGKLGNLLKG 173


>gi|253699291|ref|YP_003020480.1| peptide deformylase [Geobacter sp. M21]
 gi|251774141|gb|ACT16722.1| peptide deformylase [Geobacter sp. M21]
          Length = 172

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 101/165 (61%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L++ S P+  I      L  +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MIRTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP+I+  ++  +  +EGCLS+P + A+V+R A I V+ ++ + + 
Sbjct: 61  DVSGKDETPELIVAINPEIV-HAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               AD LL+   QHE+DHL+G+LFIDHLS LK+ +  K+  + +
Sbjct: 120 VTFRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQRAL 164


>gi|116670982|ref|YP_831915.1| peptide deformylase [Arthrobacter sp. FB24]
 gi|116611091|gb|ABK03815.1| peptide deformylase [Arthrobacter sp. FB24]
          Length = 190

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  RL V
Sbjct: 1   MTVLPITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII--TFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +     S    D     EGCLS P  +  +KR+ +  V+  
Sbjct: 61  YKFANDDGVPPAGVVVNPVLTLSKVSGALPDPDEEVEGCLSFPGGQYPLKRAEWARVQGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D +       A    A  +QHE DHL+G L+++ L         K+  +
Sbjct: 121 DGDGNPVDFEATEWFARIIQHEYDHLDGKLYVNRLMDRYARKAMKQAKR 169


>gi|317124743|ref|YP_004098855.1| peptide deformylase [Intrasporangium calvum DSM 43043]
 gi|315588831|gb|ADU48128.1| peptide deformylase [Intrasporangium calvum DSM 43043]
          Length = 181

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K + +F DP+LR  +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIKDIRLFGDPVLRTPAAEVIDFDKELRVLVQDLQDTMLDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            +NP ++  SD+     EGCLSIP    + +R+  +  +  + + +
Sbjct: 61  YWVDGIVG-----HLVNP-LLALSDEEQEGPEGCLSIPGVTVETRRALSVVAKGQNMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             ++    LLA  +QHE DHL+GILF+D L    R    + + +     +
Sbjct: 115 PVVLEGTELLARAVQHETDHLDGILFVDRLDPAARKAAMRAIREAEWFGE 164


>gi|158522244|ref|YP_001530114.1| peptide deformylase [Desulfococcus oleovorans Hxd3]
 gi|238686886|sp|A8ZUK5|DEF_DESOH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158511070|gb|ABW68037.1| peptide deformylase [Desulfococcus oleovorans Hxd3]
          Length = 173

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P  +L+  + P+  I+  +  LID+M + MY+  G+GLAAVQ+    RLV+
Sbjct: 1   MTVLDIVTYPADVLKDGALPVANIDGKLQQLIDDMAQTMYAHQGVGLAAVQVDSGLRLVI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D   ++   V INP+++    +    QEGCLS+P+ R DVKR+A + V  +D   +
Sbjct: 61  YDVSDQREKQQFRVVINPEVVAVDGECVSEQEGCLSVPELRTDVKRAATVRVEGVDREGR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             +I A+GL A  LQHE+DHLNG L +D  SRLKR++  +K+ K ++ 
Sbjct: 121 PLVIDAEGLEAIVLQHEIDHLNGTLILDRASRLKRELYKRKVQKRIKQ 168


>gi|295696040|ref|YP_003589278.1| peptide deformylase [Bacillus tusciae DSM 2912]
 gi|295411642|gb|ADG06134.1| peptide deformylase [Bacillus tusciae DSM 2912]
          Length = 155

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/152 (40%), Positives = 97/152 (63%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR  ++P+ K+  +I  LID+M + MY+ DGIGLAA Q+G+L R++V
Sbjct: 1   MAIRIIRLQGDPILREKAKPVSKVTPNIQRLIDDMADTMYNADGIGLAAPQVGILKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ +       +  +NP+++   +      EGCLSIP  +ADV R+  + VR  D N +
Sbjct: 61  ADIGE-----GLLGLVNPEVV-LEEGEQTGPEGCLSIPGIQADVTRAHHVIVRAQDRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+GLLA CL HE+DHL+GILF+D ++ 
Sbjct: 115 PLVVDAEGLLARCLLHEIDHLDGILFLDRVTD 146


>gi|288923166|ref|ZP_06417311.1| peptide deformylase [Frankia sp. EUN1f]
 gi|288345479|gb|EFC79863.1| peptide deformylase [Frankia sp. EUN1f]
          Length = 185

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 5/163 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+    DP+LR  +  +   ++ +  L+DNM+E MY+  G+GLAA Q+GV  ++ V D +
Sbjct: 2   PIRTLGDPVLRTPAEAVTVFDAALRRLVDNMIETMYAAPGVGLAAPQVGVSLQVFVFDTE 61

Query: 65  ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D A  + P+V +NP + T   +     EGCLS+P +     R+A  TVR +D    
Sbjct: 62  YDPRDVAVPRRPLVVVNPVLETGPGE-QHDDEGCLSVPGHAYPTTRAATATVRGVDATGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                ADGLLA C QHE DHL+G L+ID L+   R      + 
Sbjct: 121 AVRYEADGLLARCFQHETDHLHGRLYIDRLTGEDRRAAHAALR 163


>gi|224539752|ref|ZP_03680291.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518630|gb|EEF87735.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 184

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I      +  LI NM E M   +G+GLAA QIG+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPGLKELIANMFETMDHAEGVGLAAPQIGLPIRVVVV 60

Query: 62  D----LQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D     +D+   KN    +INP I+  S +    +EGCLS+P     VKR   I V YMD
Sbjct: 61  DLDVLSEDYPEYKNFRKAYINPHILEVSGEEISMEEGCLSLPGIHESVKRGNRIHVTYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 ENMVEHDEVVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173


>gi|229522817|ref|ZP_04412231.1| peptide deformylase [Vibrio cholerae TM 11079-80]
 gi|229340034|gb|EEO05042.1| peptide deformylase [Vibrio cholerae TM 11079-80]
          Length = 168

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ + +T +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLCATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D  +R  P+V INPK+++ S+   + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSD--NRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|319955771|ref|YP_004167034.1| peptide deformylase [Nitratifractor salsuginis DSM 16511]
 gi|319418175|gb|ADV45285.1| peptide deformylase [Nitratifractor salsuginis DSM 16511]
          Length = 177

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 102/177 (57%), Gaps = 10/177 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +V++PD  L+ +S+P+E+ + ++  L+D+M E M + +G+GLAA+Q+ V  R ++I
Sbjct: 1   MIRDIVVYPDKRLKEISQPVERFDEELHTLLDDMYETMIAKNGVGLAAIQVAVPVRALII 60

Query: 62  DLQDHAHRKNPMV---------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++      ++P V          INP I+        YQEGCLS+P Y  +V+R   + +
Sbjct: 61  NVPVDTDSEDPRVQQPKENTLEVINPVILDAEGKTR-YQEGCLSVPGYFEEVERYKAVRI 119

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Y D   +  I+  D  LA  +QHE+DHL G LFI+ LS LKR    K+  K ++ +
Sbjct: 120 EYQDRYGEKHILEDDDFLAIAVQHEMDHLEGRLFIEKLSLLKRKKFEKEWKKRLRGK 176


>gi|319902632|ref|YP_004162360.1| peptide deformylase [Bacteroides helcogenes P 36-108]
 gi|319417663|gb|ADV44774.1| peptide deformylase [Bacteroides helcogenes P 36-108]
          Length = 185

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 100/173 (57%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LIDNM E M + +G+GLAA QIG+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIDNMFETMDNAEGVGLAAPQIGLPIRVVVV 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +L         ++    V+IN  I+  + +    +EGCLS+P     V+R   I V+Y+D
Sbjct: 61  NLDVLSDDMPEYKDFRKVYINAHILDVAGEEVSMEEGCLSLPGIHESVRRGDKIRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K+  L++ +
Sbjct: 121 ENMVAHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLGSLLKGK 173


>gi|327312425|ref|YP_004327862.1| peptide deformylase [Prevotella denticola F0289]
 gi|326944165|gb|AEA20050.1| peptide deformylase [Prevotella denticola F0289]
          Length = 214

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVI
Sbjct: 29  MVLPIYTYGQPVLRKVAADIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVI 88

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL         ++     FIN  I+   D +    +EGCLS+P     V R+  I V+Y+
Sbjct: 89  DLDVLSDTFPEYKDFRHAFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVKYL 148

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + DG LA  +QHE DHL+G +F DHLS  +R MI+ K+  L+Q +
Sbjct: 149 DENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQGK 202


>gi|256420948|ref|YP_003121601.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
 gi|256035856|gb|ACU59400.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
          Length = 192

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 13/181 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+LR++   I      +  L+ NM E MY+++G+GLAA QI    RL V+
Sbjct: 1   MILPIVAYGHPVLRKMCEDITPDYPQLEQLLANMWETMYASNGVGLAAPQINRPIRLFVV 60

Query: 62  D-------LQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           D       L++   +  P        FIN  I++ + +   Y EGCLSIP  R DV R  
Sbjct: 61  DSEQIINSLEEDEKKDFPGDNGIKQAFINAHIVSTAGEEWAYNEGCLSIPKVREDVYRPE 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +T+RY+D   Q Q     G+ A  + HE DH++G LFIDHL  LKR MI  K+  + + 
Sbjct: 121 SVTLRYVDEKFQPQEKTFTGITARVIFHEYDHIDGKLFIDHLKPLKRRMIKGKLEDISKG 180

Query: 169 R 169
           +
Sbjct: 181 K 181


>gi|260912122|ref|ZP_05918678.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633728|gb|EEX51862.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 187

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 7/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+   +LR+V++ I     ++  LI NM E M ++DGIGLAA QIG+  RL+V+
Sbjct: 1   MTLPVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVV 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRY 114
           DL         ++     FINP I+           +EGCLS+P     V R   I V+Y
Sbjct: 61  DLDVLAETYPEYKGYRKAFINPHIVEIDKQSPTESLEEGCLSLPGIHEKVTRHTRIRVQY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +D + Q    + +G L   LQHE+DHL+GILF DHLS  ++ +I  K+  L+Q +
Sbjct: 121 VDEDLQPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQGK 175


>gi|113970479|ref|YP_734272.1| peptide deformylase [Shewanella sp. MR-4]
 gi|113885163|gb|ABI39215.1| peptide deformylase [Shewanella sp. MR-4]
          Length = 163

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   I   ID+++E MY TD GIGLA+ Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +  +R  P+V INP+I+  S ++ V +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSE--NRDQPLVLINPEIVEKSGEY-VGEEGCLSIPGYRAKVSRFEKVKVTALDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRKYA 163


>gi|119964524|ref|YP_948136.1| peptide deformylase [Arthrobacter aurescens TC1]
 gi|119951383|gb|ABM10294.1| peptide deformylase [Arthrobacter aurescens TC1]
          Length = 190

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA QIGV  RL V
Sbjct: 1   MTVLPVTIWGEPVLHRRASEVEVFDDELRALIADMFETNDAANGVGLAAPQIGVGKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII--TFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +     S    D   + EGCLS P     ++R+ +  V+  
Sbjct: 61  YKYANDDDVPEQGVVVNPVLTLSKVSGALPDPDEHVEGCLSFPGEYYPLQRAEWTRVQGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N       A G  A  LQHE DHL+GIL+++ L         K+  K
Sbjct: 121 DGNGNALDFEATGWFARILQHEFDHLDGILYVNRLVDRYSKKALKQAKK 169


>gi|332976422|gb|EGK13270.1| peptide deformylase [Desmospora sp. 8437]
          Length = 156

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 5/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+ PDPIL+  +RP+ K N  +  L+D+M + MY   G+GLAA Q+G+  R++V
Sbjct: 1   MAIRKIVLVPDPILKEKARPVTKFNERLHKLLDDMADTMYDAPGVGLAAPQVGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D          +  +NP++     +     EGCLSIP    +V+R+  + ++  D   Q
Sbjct: 61  VD-----DGNGLIEAVNPELFDKEGEQLAPPEGCLSIPGLLGEVRRAEKVRLKARDRQGQ 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+G LA  LQHE+DHLNGILF D   R+
Sbjct: 116 FFELEAEGYLARILQHEVDHLNGILFTDIADRV 148


>gi|297568346|ref|YP_003689690.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924261|gb|ADH85071.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
          Length = 200

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/199 (35%), Positives = 105/199 (52%), Gaps = 30/199 (15%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP P L+  ++P+ + N ++  L  +M+E M++  G+GLAA QIGV  R+VV
Sbjct: 1   MAIQPIVQFPVPSLKSRAKPVSEFNDELRRLALDMIETMHAAPGVGLAAPQIGVPLRVVV 60

Query: 61  I-------------DLQDHAHRKNP----------------MVFINPKIITFSDDFSVYQ 91
           I               Q+H                      +V INP+I+   +   V +
Sbjct: 61  IAGRVTLDEEQRAALAQEHGEAGEAAPSPPSPPSEEELAPSLVLINPEIVEA-EGQQVDE 119

Query: 92  EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           EGCLS+ +Y  +VKR A I V+  D + Q     A+   A  +QHELDHL+G LFID +S
Sbjct: 120 EGCLSVREYATNVKRFARIRVKAQDLSGQPLDFVAEDFFARVIQHELDHLDGTLFIDRIS 179

Query: 152 RLKRDMITKKMSKLVQLRD 170
            LKR +  KK+ K++Q  +
Sbjct: 180 PLKRTLYRKKLKKIMQAEE 198


>gi|312111728|ref|YP_003990044.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
 gi|311216829|gb|ADP75433.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
          Length = 157

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +P  IL +   P+++ +  ++ L+++M + M   DG+GLAA Q+G+  ++ V
Sbjct: 1   MAILPIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R      INP+I+    +  +  EGCLS P   A+VKR+ ++ VR  D   +
Sbjct: 61  VDVGDEHGRIE---LINPRIMEARGE-QIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A G LA  LQHE+DHLNGILF   + R
Sbjct: 117 PFTLKATGFLARALQHEIDHLNGILFTSKVIR 148


>gi|302392197|ref|YP_003828017.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
 gi|302204274|gb|ADL12952.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
          Length = 145

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 92/151 (60%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR  ++P++++      LI NM + MY   G+GLAA QIG+  R++V
Sbjct: 1   MAVLSIRTIGDPVLRTEAKPVDEVTEKTEGLIKNMQDTMYDASGVGLAAPQIGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +      P+  INP+I+  S    + +EGCLSIP+   +V+R+A + V  +D + +
Sbjct: 61  VDVGE-----GPLALINPEIVESSGS-EIDEEGCLSIPNENGNVERAARVVVDALDSDGR 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I A+GLLA  LQHE+DHL GILF+D + 
Sbjct: 115 EVEIEAEGLLARVLQHEIDHLEGILFVDKVE 145


>gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]
          Length = 273

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 90/162 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 83  IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              L A   QHE DHL G+LF D ++    D I +++  L +
Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 244


>gi|15241461|ref|NP_196970.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide
           deformylase [Arabidopsis thaliana]
 gi|30684999|ref|NP_850821.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide
           deformylase [Arabidopsis thaliana]
 gi|39932734|sp|Q9FUZ2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=AtDEF2;
           Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide
           deformylase; Flags: Precursor
 gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana]
 gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana]
 gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana]
 gi|332004676|gb|AED92059.1| peptide deformylase 1B [Arabidopsis thaliana]
 gi|332004677|gb|AED92060.1| peptide deformylase 1B [Arabidopsis thaliana]
          Length = 273

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 90/162 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 83  IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 143 EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              L A   QHE DHL G+LF D ++    D I +++  L +
Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 244


>gi|322421200|ref|YP_004200423.1| peptide deformylase [Geobacter sp. M18]
 gi|320127587|gb|ADW15147.1| peptide deformylase [Geobacter sp. M18]
          Length = 171

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L++ S P+  I      L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MVRKILTYPDPELKKRSLPVTVITDKTRELVRDMAETMYDAPGVGLAAPQIGVHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     +   +V INP+II  ++  +  +EGCLS+P + A+V+R A + V+ ++ + + 
Sbjct: 61  DVSCKDEKPELIVAINPEII-HAEGEAYEEEGCLSVPKFSANVRRHAKVVVKSLNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +I AD LLA   QHE+DHL+G+LFIDHLS LK+ +  K+  + ++ 
Sbjct: 120 VVIRADDLLAIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQRALEE 166


>gi|86137255|ref|ZP_01055833.1| peptide deformylase [Roseobacter sp. MED193]
 gi|85826579|gb|EAQ46776.1| peptide deformylase [Roseobacter sp. MED193]
          Length = 168

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L  +  P+ +   D+  LI +M E MY+  G GLAA Q+GVL RL V
Sbjct: 1   MALLPILQWPDAGLSTLCTPVGE--EDLTRLIADMFETMYAAPGRGLAAPQVGVLKRLFV 58

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+V INP+ ++   D     EGCLSIP     V R   +++R+ D +  
Sbjct: 59  MDATWKEAPGTPLVMINPEFLSVGADLESGDEGCLSIPGVLTSVPRPKTVSLRWQDQDRN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DG  A C+QHE DHL G++ ++ L+   R          ++ R
Sbjct: 119 WTSGSFDGFAARCIQHEYDHLEGLVTLNRLTPAARSEAEATYQNRLETR 167


>gi|326798583|ref|YP_004316402.1| peptide deformylase [Sphingobacterium sp. 21]
 gi|326549347|gb|ADZ77732.1| Peptide deformylase [Sphingobacterium sp. 21]
          Length = 190

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/173 (39%), Positives = 96/173 (55%), Gaps = 6/173 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+L+R +  I+K   ++ NLI NM E MY+  G+G+AA Q+G+  RL V+
Sbjct: 1   MKLPIVAYGDPVLKRKAIDIDKDYPELENLIANMFETMYAAHGVGIAAPQVGLSIRLFVV 60

Query: 62  DLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D    A    P       VFIN  I     +   + EGCLSIPD R DV R + I +RY 
Sbjct: 61  DASPFAEDDAPELKDFKKVFINAHIEEEEGEKWEFNEGCLSIPDIREDVSRHSIIHIRYF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D N        DGL A  +QHE DH+ G LF D LS L++ M+  K+  + + 
Sbjct: 121 DENWVEHREKYDGLAARVIQHEYDHIEGKLFTDRLSVLRKAMLKSKLDAISKG 173


>gi|255101749|ref|ZP_05330726.1| peptide deformylase 2 [Clostridium difficile QCD-63q42]
          Length = 146

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 97/152 (63%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +EKI+  I+ L+D+M E MY  DG+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +     + +  INP+II  S +  + +EGCLS+     +V+R  ++ VR ++ N +
Sbjct: 61  IDIGE-----DLIELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  + LLA    HE+DHL+GILF+D + +
Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146


>gi|162147911|ref|YP_001602372.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542528|ref|YP_002274757.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786488|emb|CAP56070.1| Peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530205|gb|ACI50142.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 179

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ P  ILR+ +RP+   ++  + + +  M   MY   GIGLAA Q+G+  R  ++DL
Sbjct: 14  PILVAPQAILRQKARPVRPEDAAGVRDALPRMFAAMYQAPGIGLAAPQVGMGLRFAIVDL 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +   R+ P++ INP +I  SD  +  +EGCLS+P+  A+V R   + VRY   +   + 
Sbjct: 74  GEEGERQ-PLILINPDVIAESDSLASREEGCLSLPNQYAEVIRPDRVRVRYRTLDGTEEE 132

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + ADGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K  + +
Sbjct: 133 LEADGLLATCIQHEIDHLEGILFVDHLSTLKRNMIMRRLAKEQRQK 178


>gi|159037484|ref|YP_001536737.1| peptide deformylase [Salinispora arenicola CNS-205]
 gi|157916319|gb|ABV97746.1| peptide deformylase [Salinispora arenicola CNS-205]
          Length = 186

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  L+ ++ + M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLTDTMREQNGAGLAAPQLGVGLRVFA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLS+P    D KR   +  R  + +  
Sbjct: 61  FDVDDVIG-----HLVNPVLEFPDVEEQDGPEGCLSLPGLYFDTKRRQNVVARGFNGHGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I   GL+A C+QHE DHL+G+LFID L    R    K + +   
Sbjct: 116 PVQIVGTGLMARCVQHETDHLDGVLFIDRLDAAGRKEAMKAIRQAQW 162


>gi|126700204|ref|YP_001089101.1| peptide deformylase 2 [Clostridium difficile 630]
 gi|254976176|ref|ZP_05272648.1| peptide deformylase 2 [Clostridium difficile QCD-66c26]
 gi|255093565|ref|ZP_05323043.1| peptide deformylase 2 [Clostridium difficile CIP 107932]
 gi|255307617|ref|ZP_05351788.1| peptide deformylase 2 [Clostridium difficile ATCC 43255]
 gi|255315309|ref|ZP_05356892.1| peptide deformylase 2 [Clostridium difficile QCD-76w55]
 gi|255517977|ref|ZP_05385653.1| peptide deformylase 2 [Clostridium difficile QCD-97b34]
 gi|255651093|ref|ZP_05397995.1| peptide deformylase 2 [Clostridium difficile QCD-37x79]
 gi|260684158|ref|YP_003215443.1| peptide deformylase 2 [Clostridium difficile CD196]
 gi|260687817|ref|YP_003218951.1| peptide deformylase 2 [Clostridium difficile R20291]
 gi|115251641|emb|CAJ69474.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2 )
           [Clostridium difficile]
 gi|260210321|emb|CBA64646.1| peptide deformylase 2 [Clostridium difficile CD196]
 gi|260213834|emb|CBE05821.1| peptide deformylase 2 [Clostridium difficile R20291]
          Length = 146

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 96/152 (63%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +EKI+  I+ L+D+M E MY  DG+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II  S +  + +EGCLS+     +V+R  ++ VR ++ N +
Sbjct: 61  IDIGE-----ELIELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  + LLA    HE+DHL+GILF+D + +
Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146


>gi|24374073|ref|NP_718116.1| peptide deformylase [Shewanella oneidensis MR-1]
 gi|32363156|sp|Q8EE60|DEF3_SHEON RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName:
           Full=Polypeptide deformylase 3
 gi|24348554|gb|AAN55560.1|AE015695_2 polypeptide deformylase [Shewanella oneidensis MR-1]
          Length = 163

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   I   ID+++E MY TD GIGLA+ Q+G    ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  P+V +NP+I+  S ++ V +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSET--RDQPLVLVNPEIVEKSGEY-VGEEGCLSIPGYRAKVTRFEKVKVTALDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K  
Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRKYA 163


>gi|325280501|ref|YP_004253043.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
 gi|324312310|gb|ADY32863.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
          Length = 184

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 5/170 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V++  PILR++S  I     ++   I ++ + M   DG+GLAA Q+G   R+ V+D  
Sbjct: 4   PIVVYGHPILRKISEDITPEYPELDKFIRDLFQTMDEADGVGLAAPQVGRNIRIFVVDAN 63

Query: 65  -----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                D   +     FIN  I+    D     EGC+SIP    DVKR   I + YMD   
Sbjct: 64  AFEEMDPDCKGFRKAFINAHILERWGDEISRNEGCISIPGIHEDVKRPNCIRISYMDEQG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Q       G+ A  +QHE DHL GILF DHLS LK+ ++  K++ +   +
Sbjct: 124 QEHEEEFCGIKAWIIQHEYDHLEGILFTDHLSALKKRILKNKLNNISTGK 173


>gi|237817222|ref|ZP_04596214.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|297249721|ref|ZP_06933422.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|237788035|gb|EEP62251.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|297173590|gb|EFH32954.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|326410617|gb|ADZ67681.1| peptide deformylase [Brucella melitensis M28]
 gi|326553909|gb|ADZ88548.1| peptide deformylase [Brucella melitensis M5-90]
          Length = 214

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 51  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 111 LELDRAAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 214


>gi|157737933|ref|YP_001490617.1| peptide deformylase [Arcobacter butzleri RM4018]
 gi|157699787|gb|ABV67947.1| polypeptide deformylase [Arcobacter butzleri RM4018]
          Length = 171

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 107/172 (62%), Gaps = 4/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+ +LR  S+ +EK ++++  L+D+M E M + +G+GLAA+Q+ V   ++VI
Sbjct: 1   MVREVITYPNKLLRLKSKDVEKFDNELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVI 60

Query: 62  DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L   +D   + + +  INP I T  D   V+ EGCLS+P +  DV R+  I V Y +  
Sbjct: 61  NLPNEEDIQDKNDLIEAINPVI-THKDGTQVFTEGCLSVPGFSEDVTRAEHIIVEYFNRF 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + Q + ++G LA   QHE++HL+G LFI++LS +KR    K+  K ++ ++
Sbjct: 120 GEKQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKKRLKDKN 171


>gi|86604850|ref|YP_473613.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
 gi|86553392|gb|ABC98350.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
          Length = 198

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/160 (38%), Positives = 96/160 (60%), Gaps = 2/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+ ++ + ++N +I  L  +ML+ MYS DGIGLAA Q+G+  RL+V+DL  
Sbjct: 19  IHRMGDKVLRQPAKRVSQVNDEIRQLARHMLQTMYSADGIGLAAPQVGIPKRLIVVDLYP 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+V INP+I  +  +    QEGCLSIP    +V R   + V + D   + + + 
Sbjct: 79  DKPEVPPLVLINPEIREYLGEVVAGQEGCLSIPGVFCEVMRPQGVVVSFKDETGRPRTLQ 138

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA  +QHE+DHLNG+LF+DH+      ++ +++ K 
Sbjct: 139 ADDLLARVIQHEIDHLNGVLFVDHVENE--LLLDQELRKH 176


>gi|328952875|ref|YP_004370209.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109]
 gi|328453199|gb|AEB09028.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109]
          Length = 167

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +P+ +L+  + P+ +I  DI  LID+M   MY+  GIGLAA Q+G L R+++
Sbjct: 1   MAILEIQTYPESVLKEKALPVTEITEDIQRLIDDMAATMYNAPGIGLAANQVGALQRVII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+      +   V INP+II       VYQE CLS+ DY ADV+R A +    +D N +
Sbjct: 61  FDITPKNEGRKLNVLINPEIIAAEGA-QVYQEACLSVLDYAADVRRKARVLATGLDRNGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              I A+ LLA  LQHE+DHL+GILFID +SRLKR++
Sbjct: 120 EVRIEAEDLLAVVLQHEIDHLDGILFIDRISRLKRNL 156


>gi|329890845|ref|ZP_08269188.1| peptide deformylase [Brevundimonas diminuta ATCC 11568]
 gi|328846146|gb|EGF95710.1| peptide deformylase [Brevundimonas diminuta ATCC 11568]
          Length = 190

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/188 (41%), Positives = 109/188 (57%), Gaps = 20/188 (10%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  + ++   +     IL+ V+ P+E  +   +  L+D+MLE MY   GIGLAA QIG L
Sbjct: 1   MAIRRILTIDNAADLAILKTVAAPVEGGVTDAVRALMDDMLETMYDAPGIGLAAPQIGEL 60

Query: 56  YRLVVIDLQDHA---------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
            R+VV+DL D                  R+NP  F+NP+I+  S++   Y+EGCLS+P Y
Sbjct: 61  TRVVVMDLGDKPVEGASDEPQTEEEALERRNPRFFVNPEILWSSEEMFSYEEGCLSVPTY 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              V+R A + VRYM+   +      +GL A C QHELDHLNG+LFIDHLSRL+RD    
Sbjct: 121 YDSVERPARVRVRYMNYQGETIEEEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRAVS 180

Query: 161 KMSKLVQL 168
           K+ K  ++
Sbjct: 181 KVKKHARM 188


>gi|315637680|ref|ZP_07892885.1| peptide deformylase [Arcobacter butzleri JV22]
 gi|315478027|gb|EFU68755.1| peptide deformylase [Arcobacter butzleri JV22]
          Length = 171

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 106/171 (61%), Gaps = 4/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+ +LR  S+ +EK +S++  L+D+M E M + +G+GLAA+Q+ V   ++VI
Sbjct: 1   MVREVITYPNKLLRLKSKDVEKFDSELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVI 60

Query: 62  DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L   +D   + + +  INP I T  D   V+ EGCLS+P +  DV R+  I V Y +  
Sbjct: 61  NLPNEEDVQDKNDLIEAINPVI-THKDGTQVFTEGCLSVPGFSEDVTRAEHIVVEYFNRF 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + Q + ++G LA   QHE++HL+G LFI++LS +KR    K+  K ++ +
Sbjct: 120 GEKQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKKRLKDK 170


>gi|260774331|ref|ZP_05883246.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
 gi|260611292|gb|EEX36496.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
          Length = 171

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 110/168 (65%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  ++ I   +  LID+MLE +YST +GIGLA+VQ+G    +V
Sbjct: 1   MAVLEILTAPDPRLKITAEKVQDI-ESVQKLIDDMLETLYSTDNGIGLASVQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL D  +R  P++ INP++++ S+  ++ QEGCLS+PDY A+V+R   + V  +D   
Sbjct: 60  IIDLSD--NRDQPLILINPEVVSGSN-KALGQEGCLSVPDYYAEVERYTSVVVSALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Q   I +D  LA  +QHE+DHL+G LFID++S LKR M  KK+ K V+
Sbjct: 117 QRITIESDDFLAIVMQHEIDHLSGNLFIDYISPLKRQMAMKKVKKYVK 164


>gi|89074343|ref|ZP_01160825.1| peptide deformylase [Photobacterium sp. SKA34]
 gi|89049830|gb|EAR55371.1| peptide deformylase [Photobacterium sp. SKA34]
          Length = 170

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 105/171 (61%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M    ++  P+P LR  +  +  + ++ I  LID+ML  MY T +GIGLAA Q+G    +
Sbjct: 1   MAVLEILTEPNPKLRVQAEDVADVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VIDL +   R  P VF+NPKI+   ++  V QEGCLS+PDY ADV+R   I +  +D +
Sbjct: 61  IVIDLSE--ERNEPHVFVNPKIV-RGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                +  D  LA  LQHE+DHL GILFID+LS LKR M  KK+ K ++ +
Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLKAQ 168


>gi|325852042|ref|ZP_08171125.1| peptide deformylase [Prevotella denticola CRIS 18C-A]
 gi|325484598|gb|EGC87514.1| peptide deformylase [Prevotella denticola CRIS 18C-A]
          Length = 214

 Score =  191 bits (485), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVI
Sbjct: 29  MVLPIYTYGQPVLRKVAADIPLDYPDLQELIRNMFETNTASDGVGLAAPQIGKSIRVVVI 88

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL         ++     FIN  I+   D +    +EGCLS+P     V R+  I V+Y+
Sbjct: 89  DLDVLSDTFPEYKDFRHAFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVKYL 148

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + DG LA  +QHE DHL+G +F DHLS  +R MI+ K+  L+Q +
Sbjct: 149 DENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQGK 202


>gi|260574965|ref|ZP_05842967.1| peptide deformylase [Rhodobacter sp. SW2]
 gi|259022970|gb|EEW26264.1| peptide deformylase [Rhodobacter sp. SW2]
          Length = 163

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 1/150 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L     P+    +D+  L  +ML  MY+  G GLAA QIG+L R+ V
Sbjct: 1   MPVLPILCWPDARLATPCDPVAP-GADLRALAADMLATMYAATGRGLAAPQIGILQRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R  P V +NP+I+  S+      EGCLS+P    D+ R A I +R+ D +  
Sbjct: 60  MDTGWKEGRPAPQVLVNPEILWRSEACKTVAEGCLSLPGISPDISRPAEIRLRWRDLDGT 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
               +  G  ATC QHE+DHL+GIL +DHL
Sbjct: 120 PHEAHLTGFAATCAQHEIDHLDGILTLDHL 149


>gi|315639061|ref|ZP_07894229.1| peptide deformylase [Campylobacter upsaliensis JV21]
 gi|315480837|gb|EFU71473.1| peptide deformylase [Campylobacter upsaliensis JV21]
          Length = 177

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 103/171 (60%), Gaps = 3/171 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+  L   S P+EK + ++  L+D+M E M S+ G+GLAA+Q+ V  R+ ++
Sbjct: 1   MVRKIITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRVFIV 60

Query: 62  DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ D      +++ +  INP I   +D+  V  EGCLS+PD+  +V+R   IT++Y +  
Sbjct: 61  NIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRHRKITLKYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + + + A+  LA  +QHE DHL+G LFI+ L   KR+  +K+  K  + +
Sbjct: 121 GKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKEFKKQRKSK 171


>gi|56750222|ref|YP_170923.1| peptide deformylase [Synechococcus elongatus PCC 6301]
 gi|81300149|ref|YP_400357.1| peptide deformylase [Synechococcus elongatus PCC 7942]
 gi|56685181|dbj|BAD78403.1| polypeptide deformylase [Synechococcus elongatus PCC 6301]
 gi|81169030|gb|ABB57370.1| peptide deformylase [Synechococcus elongatus PCC 7942]
          Length = 192

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 66/143 (46%), Positives = 93/143 (65%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ + +I+ ++   I  ML+ MYS DGIGLAA Q+G+  +L+VIDL+    
Sbjct: 24  LGDRVLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLELEDE 83

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           +  P+V INPKI   + D    QEGCLSIP    DV+R   + V Y D N + Q + ADG
Sbjct: 84  QAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADG 143

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA C+QHE+DHLNG+LF+D + 
Sbjct: 144 LLARCIQHEMDHLNGVLFVDRVE 166


>gi|253575776|ref|ZP_04853111.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844819|gb|EES72832.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 160

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PD +L +V++ ++KI  +I  L+ +M + MY  +G+GLAA QIG+L R++V
Sbjct: 1   MAIRIIVKEPDEVLHQVAKEVKKITPNIQKLLTDMADTMYDAEGVGLAAPQIGILKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP+I++   +     EGCLSIP YR DV+R+  +TV+ +D N  
Sbjct: 61  VDVGD---EHGLIELINPEIVSKEGE-QFGPEGCLSIPGYRGDVRRAMTVTVKGLDRNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                   LLA   QHE+DHLNG+L+ D   R+
Sbjct: 117 EVTYTGSELLARAFQHEIDHLNGVLYTDIAERV 149


>gi|271966900|ref|YP_003341096.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270510075|gb|ACZ88353.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 182

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 6/172 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+    +P+L R    + + + D+  L+ +M   MY+ +G+GLAA QIG+  R+ V 
Sbjct: 8   TARPITFVGEPVLHRPCETVTRFDDDLAMLVADMFASMYAAEGVGLAANQIGIGLRVFVY 67

Query: 62  DLQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D        V +NP ++      +    Y EGCLS+P  RA + R     V   D  
Sbjct: 68  DCPDETEEFRKGVVVNPTLVMPGPDEEHLDDYAEGCLSVPGQRASLARPDRAVVHGFDVT 127

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                +   GLLA CLQHE DHL G L+ID L   +R+ +   ++   Q RD
Sbjct: 128 GAPVTVEGTGLLARCLQHETDHLEGRLYIDRLPAERREQV---LAAYEQERD 176


>gi|283778512|ref|YP_003369267.1| peptide deformylase [Pirellula staleyi DSM 6068]
 gi|283436965|gb|ADB15407.1| peptide deformylase [Pirellula staleyi DSM 6068]
          Length = 222

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 1/164 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +  ++ +P P LR+V++PI+++++++  ++  M ++MY   GIGLAA Q+ +  RL VI
Sbjct: 29  TRLQIITYPHPTLRKVAKPIKRVDAELRAMVAQMFDLMYEAKGIGLAANQVDLPLRLFVI 88

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +L     +   +VFINP + +     +  +EGCLS+P     V R   + V   +   Q 
Sbjct: 89  NLTAEKGKGEELVFINPVL-SHPKGSAEAEEGCLSLPGVYGQVVRPKTVQVNAYNLQGQE 147

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                 GLLA C+QHE DHL+G++F D +S   R  +  ++ + 
Sbjct: 148 ISAEVGGLLARCIQHENDHLDGVMFPDRMSESSRVELGGELQEF 191


>gi|160880624|ref|YP_001559592.1| peptide deformylase [Clostridium phytofermentans ISDg]
 gi|189083068|sp|A9KM99|DEF_CLOPH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|160429290|gb|ABX42853.1| peptide deformylase [Clostridium phytofermentans ISDg]
          Length = 163

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ + I  D IL + S+ IE++   I  LID+ML+ MY   G+GLAA Q+GVL RLVV
Sbjct: 1   MAKRNIRIMGDSILNKTSKVIEEVTPKIDTLIDDMLDTMYDAGGVGLAAPQVGVLKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+        P++ INP+II+   +     EGCLS+P     V R  ++ V+  D + +
Sbjct: 61  IDVS--LEGNEPIILINPEIISTDGE-QTGDEGCLSLPGKAGIVTRPNYVKVKAYDRHMK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA    HE+DHL+GIL+++ ++
Sbjct: 118 PFEVEGEGLLARAFCHEIDHLDGILYVEKVN 148


>gi|302386506|ref|YP_003822328.1| peptide deformylase [Clostridium saccharolyticum WM1]
 gi|302197134|gb|ADL04705.1| peptide deformylase [Clostridium saccharolyticum WM1]
          Length = 163

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+  +P+++I   I  L+++M E MY ++G+GLAA Q+GVL ++VV
Sbjct: 1   MAIRKIRTIGDEILRKQCKPVKEITPRITELVEDMFETMYDSNGVGLAASQVGVLKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D     N  V INP+I+          EGCLS+P     V R  ++ ++  D + +
Sbjct: 61  IDVED----GNQYVLINPEILETRGS-QTGPEGCLSVPGKSGTVTRPEYVRIKAYDASME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA  + HE DHLNG L++D + 
Sbjct: 116 PYELEGEGLLARAICHECDHLNGDLYVDKVE 146


>gi|28210907|ref|NP_781851.1| peptide deformylase [Clostridium tetani E88]
 gi|39930881|sp|Q895Q2|DEF_CLOTE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28203346|gb|AAO35788.1| polypeptide deformylase [Clostridium tetani E88]
          Length = 150

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 96/154 (62%), Gaps = 6/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    D +LR+ SR +EKI+  I  L+D+ML+ MY  +G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRNLRFLGDELLRKKSRRVEKIDDRIQALLDDMLDTMYENNGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II     + + QEGCLS+P  + +V+R   + V+  + + +
Sbjct: 61  IDIGE-----GPLFLINPEIIEQEGSY-IEQEGCLSVPGRQGEVERPYRVKVKAQNRDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             I+  +  LA  L HE+DHLNG+LF+D +  +K
Sbjct: 115 EIIVEGEEFLAKALCHEIDHLNGVLFVDKIIDVK 148


>gi|300781120|ref|ZP_07090974.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
 gi|300532827|gb|EFK53888.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
          Length = 176

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ IF DP+L   +  I+  +  +  L+ +MLE M +  G+GLAA QIG+  R+ V
Sbjct: 1   MTVRPIRIFGDPVLNSEATRIDTFDEALRTLVSDMLETMDAAGGVGLAANQIGLTKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D             INP      D   +  EGCLSIP  +A+V+R   +  R  D   +
Sbjct: 61  YDCNGMRG-----ALINPVWEPIDDYVQIGPEGCLSIPGIQAEVERHENVIARGQDEFGR 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              I  +GLLA C+QHE DHL+G+LF+  L    R    
Sbjct: 116 PVAIRGNGLLARCIQHETDHLDGVLFLRRLEPEVRKEAM 154


>gi|291443077|ref|ZP_06582467.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291346024|gb|EFE72928.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 205

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 71/149 (47%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+L R    +      +  LI++M   MY+  G+GLAA QIGV  ++ V D
Sbjct: 37  VREMSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYD 96

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V  +    +  
Sbjct: 97  CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPV 156

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            I   G  A CLQHE DHL G ++ D L+
Sbjct: 157 RIAGTGWFARCLQHECDHLEGTVYPDRLT 185


>gi|239982203|ref|ZP_04704727.1| polypeptide deformylase [Streptomyces albus J1074]
 gi|291454049|ref|ZP_06593439.1| polypeptide deformylase [Streptomyces albus J1074]
 gi|291356998|gb|EFE83900.1| polypeptide deformylase [Streptomyces albus J1074]
          Length = 218

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R ++ +   ++++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 42  TARPITVVGNPVLHRETKDVTVFDAELAQLVDDMFASQRAAEGVGLAANQIGVDKKVFVY 101

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +     +  V     EGCLS+P   A++ R  +  VR  D  
Sbjct: 102 DCPDDEGARHVGVVCNPVLDELPSERRVLDDSNEGCLSVPTAYAELARPDYAVVRGQDEK 161

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               ++   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 162 GNPIVVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 207


>gi|150025801|ref|YP_001296627.1| peptide deformylase [Flavobacterium psychrophilum JIP02/86]
 gi|158513727|sp|A6H0E7|DEF_FLAPJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149772342|emb|CAL43820.1| Peptide deformylase [Flavobacterium psychrophilum JIP02/86]
          Length = 194

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+V   I K   ++   I NM E MY+  G+GLAA Q+G+  RL ++
Sbjct: 1   MILPIVGYGDPVLRKVCEEITKDYINLEETIANMYETMYNACGVGLAAPQVGLPIRLFIV 60

Query: 62  DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    +             +     FIN K++    +   + EGCLSIPD R DV R+  
Sbjct: 61  DADPFSDSDDISKEEAAALKGFKKTFINAKMLKEEGEEWSFSEGCLSIPDVREDVYRNPN 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D N   +    +GL+A  +QHE DH+ G+LF D ++  K+  I KK+  +++ +
Sbjct: 121 ITIEYYDENFNKKTEEYNGLIARVIQHEYDHIEGVLFTDKITVFKKQFIKKKLQNIMEGK 180


>gi|313157241|gb|EFR56671.1| peptide deformylase [Alistipes sp. HGB5]
          Length = 181

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI+ + +LR+    I     ++  L+++M + +   +G+GLAA QIG   RL ++
Sbjct: 1   MIYPIVIYGNEVLRKQCEEIAPDYPEVKKLVEDMFQTLGEAEGVGLAAPQIGKAIRLFIV 60

Query: 62  DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D                 FINP+I  FS++   Y EGCLS P   ADV RS  I +RY+D
Sbjct: 61  DCTPWGEDDPECADYKRAFINPEIYAFSEEKKTYNEGCLSFPGIHADVPRSLAIRMRYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            N         GL A  +QHE DH+ G++F D +S L+R
Sbjct: 121 ENFVEHDEEFHGLKAWVIQHEYDHIEGVVFTDRISPLRR 159


>gi|329926582|ref|ZP_08280995.1| peptide deformylase [Paenibacillus sp. HGF5]
 gi|328939123|gb|EGG35486.1| peptide deformylase [Paenibacillus sp. HGF5]
          Length = 164

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PD +L + ++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+V
Sbjct: 1   MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D       +  INP+I+  S+      EGCLSIP +  DV+R+  +TV+ +D    
Sbjct: 61  IDAGD---EHGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +I   GLLA   QHE+DHLNG+LF +   R+
Sbjct: 117 ELVITGTGLLARAFQHEIDHLNGVLFTEIADRV 149


>gi|134094837|ref|YP_001099912.1| peptide deformylase [Herminiimonas arsenicoxydans]
 gi|133738740|emb|CAL61787.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas
           arsenicoxydans]
          Length = 177

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/164 (39%), Positives = 107/164 (65%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PD  L +V++ + ++++ I  L+++M + MY+ DGIGLAA Q+ V  R+++
Sbjct: 1   MSKLAILQYPDERLHKVAQAVTQVDAGIRRLVEDMAQTMYAADGIGLAATQVNVHLRVIL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   R   +V INP++I      +  +EGCLS+PD    VKR+A+I +R +D N +
Sbjct: 61  VDISE--DRSQLLVMINPEVIKM-GGSAECEEGCLSVPDVYEKVKRAAWIRLRALDINGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + ADGL A C+QHELDHL G++F++HLS L +  I   ++K
Sbjct: 118 PFEVQADGLKAMCIQHELDHLQGMVFVEHLSPLNQARILSTLAK 161


>gi|56417231|ref|YP_154305.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. St. Maries]
 gi|222475595|ref|YP_002564012.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Florida]
 gi|254995399|ref|ZP_05277589.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Mississippi]
 gi|255003586|ref|ZP_05278550.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Puerto Rico]
 gi|255004717|ref|ZP_05279518.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Virginia]
 gi|56388463|gb|AAV87050.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. St. Maries]
 gi|222419733|gb|ACM49756.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale
           str. Florida]
          Length = 185

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 17/184 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M   PL+  PD  L   S  +        +  L +NMLE MY   GIGLAAVQ+GV  R+
Sbjct: 1   MAVLPLLTLPDSRLSLCSEEVHAADFGPQLETLTNNMLETMYHNKGIGLAAVQVGVHKRI 60

Query: 59  VVIDLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            V+DL+               ++     P+V +NP ++  S+  +  +EGCLS+P YR  
Sbjct: 61  CVVDLEYGSDRYEIPEDDGVGEYRATCGPVVILNPIVVEESEQLATMEEGCLSVPGYRET 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V+R   I V+Y D N Q + I A GLLA CLQHELDHLNG++F+  +S+LKRDM+ +K+ 
Sbjct: 121 VQRPERIVVQYTDLNRQTKYIKACGLLARCLQHELDHLNGVVFLQRVSKLKRDMVMEKIR 180

Query: 164 KLVQ 167
           K  +
Sbjct: 181 KASK 184


>gi|126463294|ref|YP_001044408.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104958|gb|ABN77636.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 167

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTVAAPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  +   +   +   NP+I+  S  F  ++EG  ++P   A V R   +TVR+++   + 
Sbjct: 61  DCSESRGKA--IRLANPEILHASGQFREHEEGSPNLPGASAVVSRPRAVTVRFLNEAGET 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHL+G L+ID LS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|332876937|ref|ZP_08444690.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685045|gb|EGJ57889.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 192

 Score =  190 bits (484), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V+  I     ++  LI NM + M    G+GLAA QIG+  RL V+
Sbjct: 1   MVLPIIAYGDPVLRKVATDISPDYPNLNTLIANMYDTMNYAYGVGLAAPQIGLPIRLFVV 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A   +               FIN KI   + D  ++ EGCLSIP  R DV R   
Sbjct: 61  DTAPFADDDDLTEEERTFLSNFKKTFINAKITEETGDKWLFNEGCLSIPGVREDVSRQKQ 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ ++D     Q +   GL A  +QHE DH+ GILF D LS  K+ +I  K++ + + +
Sbjct: 121 ITIEFVDEQFTPQRLTLTGLAARVVQHEYDHIEGILFTDKLSSFKKQLIKGKLTNISKGK 180


>gi|224373737|ref|YP_002608109.1| peptide deformylase [Nautilia profundicola AmH]
 gi|254767597|sp|B9L6X1|DEF_NAUPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|223589661|gb|ACM93397.1| peptide deformylase [Nautilia profundicola AmH]
          Length = 174

 Score =  190 bits (484), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 102/165 (61%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P+ +L+++S+P+E+ + D+  L+D+M E M   +G+GLAA+Q+ V  R ++
Sbjct: 1   MAVLDIVTYPNKVLKQISKPVERFDKDLHKLLDDMYETMIKNNGVGLAAIQVAVPIRALL 60

Query: 61  IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ID+ D   +++    +  INP+ +T+ D      EGCLS+PDY  +V+R   + V++ D 
Sbjct: 61  IDIGDEEGKQSKDTLIEVINPEFLTW-DGTQKDTEGCLSVPDYFDEVERYKNVKVKFFDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             +  ++ A+GLL+   QHE DHL+G LF++ L  +KR    K+ 
Sbjct: 120 FGKEHVMEAEGLLSVAFQHETDHLDGHLFVERLDYIKRKKFEKEW 164


>gi|197117031|ref|YP_002137458.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
 gi|197086391|gb|ACH37662.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
          Length = 172

 Score =  190 bits (484), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 1/165 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L++ S P+  I      L  +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MIRTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP+I+  ++  +  +EGCLS+P + A+V+R A I V+ ++   + 
Sbjct: 61  DVSGKDETPELIVAINPEIV-HAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLEGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               AD LL+   QHE+DHL+G+LFIDHLS LK+ +  K+  + +
Sbjct: 120 VTFRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQRAL 164


>gi|296133300|ref|YP_003640547.1| peptide deformylase [Thermincola sp. JR]
 gi|296031878|gb|ADG82646.1| peptide deformylase [Thermincola potens JR]
          Length = 150

 Score =  190 bits (484), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 88/156 (56%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   DPIL+   RP+ KI  +I+ L+D+M + MY  +G+GLAA QIGV  R++V
Sbjct: 1   MAVYKIVEIGDPILKEKCRPVNKITPNIIKLLDDMADTMYDANGVGLAAPQIGVGKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  +NP+I+   +      EGCLSIP  +  V R A + VR M+    
Sbjct: 61  VDVGD-----GLIELVNPEIV-HREGSETDVEGCLSIPGIQGQVPRYAKVRVRGMNREGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
                A+GLLA   QHE+DHL GILFID    + + 
Sbjct: 115 RVEYEAEGLLARAFQHEIDHLEGILFIDRAKEIIKK 150


>gi|90579699|ref|ZP_01235508.1| peptide deformylase [Vibrio angustum S14]
 gi|90439273|gb|EAS64455.1| peptide deformylase [Vibrio angustum S14]
          Length = 170

 Score =  190 bits (484), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 105/171 (61%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M    ++  P+P LR  +  +  + ++ I  LID+ML  MY T +GIGLAA Q+G    +
Sbjct: 1   MAVLEILTEPNPKLRVQAEDVVDVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VIDL +   R  P VF+NPKI+   ++  V QEGCLS+PDY ADV+R   I +  +D +
Sbjct: 61  IVIDLSE--ERNEPQVFVNPKIV-RGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                +  D  LA  LQHE+DHL GILFID+LS LKR M  KK+ K ++ +
Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLKAQ 168


>gi|283797831|ref|ZP_06346984.1| peptide deformylase [Clostridium sp. M62/1]
 gi|291074519|gb|EFE11883.1| peptide deformylase [Clostridium sp. M62/1]
 gi|295091956|emb|CBK78063.1| peptide deformylase [Clostridium cf. saccharolyticum K10]
          Length = 159

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+  +P++++      LI++M + MY  +G+GLAAVQ+GV  ++VV
Sbjct: 1   MAIREIRTIGDEILRKECKPVKEMTPHTAELIEDMFDTMYEANGVGLAAVQVGVRKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D     N  V INP+I+  S       EGCLS+P     V R  ++ V+ ++   +
Sbjct: 61  IDVED----GNQYVLINPEILETSGS-QTGPEGCLSVPGKSGTVTRPDYVKVKALNEKME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             ++  +GLLA  + HE DHL G+L++D + 
Sbjct: 116 EFVLEGEGLLARAICHECDHLYGVLYVDKVE 146


>gi|322421893|ref|YP_004201116.1| peptide deformylase [Geobacter sp. M18]
 gi|320128280|gb|ADW15840.1| peptide deformylase [Geobacter sp. M18]
          Length = 168

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 110/169 (65%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  KP+V +PDPIL++V  P++ I+ +I  L++++++ M++  G +G+AA Q+GV  R+ 
Sbjct: 1   MAVKPIVTYPDPILKQVCPPVQAIDVEIRQLVEDLVDTMHAGPGSVGVAAPQVGVARRVC 60

Query: 60  VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           VID+  + H K      ++ INP+I+  S   +V +EGC+S+PDY  DV+R+  +T+R+ 
Sbjct: 61  VIDVSKNRHGKENNHGLLLMINPEILAKSGA-AVMREGCMSVPDYTGDVERATELTLRFT 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +   +   A G  A  +QHE+DHL+G+LF+D ++ LK  +  +K  K
Sbjct: 120 EPDGGVREFEASGFEAVAIQHEMDHLDGLLFLDRIASLKTGLFRRKSYK 168


>gi|167623826|ref|YP_001674120.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
 gi|167353848|gb|ABZ76461.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
          Length = 163

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 100/165 (60%), Gaps = 5/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R + P+  I   +   ID+++E MY TD GIGLAA Q+G L+ ++
Sbjct: 1   MAVLDILTIPDERLKRKAVPVTDI-ESVQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D   R  PMV INP+ +    ++   +EGCLSIP YRA V R   + V  +D + 
Sbjct: 60  VIDLSD--ERDQPMVLINPEFLESRGEYQ-GEEGCLSIPGYRAKVNRHQGVKVTALDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   I  D  LA  LQHE+DHLNG++F DHLS LK+ +  KK+ K
Sbjct: 117 KAFEIDTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKK 161


>gi|260892750|ref|YP_003238847.1| peptide deformylase [Ammonifex degensii KC4]
 gi|260864891|gb|ACX51997.1| peptide deformylase [Ammonifex degensii KC4]
          Length = 154

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 89/156 (57%), Gaps = 9/156 (5%)

Query: 1   MVKKPLVIFPD---PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + +V   D    +LR  ++P++KI   I  LI +M E MY   G+GLAA Q+GV  R
Sbjct: 1   MAVRKIVTLGDSGDKVLREKAQPVDKITPQIQKLIRDMTETMYRAQGVGLAAPQVGVSLR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V+D        N    INP+I+    +    +EGCLSIP    +V R+A + VR +  
Sbjct: 61  VIVVDTG-----SNLYQLINPEIVAREGE-EKGREGCLSIPGVWGEVVRAASVLVRALTP 114

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +   I ADGLLA  LQHE+DHL+GILFID   ++
Sbjct: 115 EGREVSIEADGLLARALQHEIDHLDGILFIDRAEKV 150


>gi|260574966|ref|ZP_05842968.1| peptide deformylase [Rhodobacter sp. SW2]
 gi|259022971|gb|EEW26265.1| peptide deformylase [Rhodobacter sp. SW2]
          Length = 167

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  L+ V+ P+ +I  ++  +  +M+E M    G+GLAA QIGV+ RL V
Sbjct: 1   MTVRRCLPYPDRRLKTVAEPVAEITDEVRAIWADMVETMDDMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R   ++  NP+++  S     + EG  ++P   A + R   +TVR+++   Q
Sbjct: 61  VDCSET--RGQAVLMANPEVLHASGQMREHDEGSPNLPGVSAVISRPRAVTVRFLNAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            +      L AT +QH++DHLNG L+IDHLS LKR M+  K  K +
Sbjct: 119 VEERDFVNLWATSVQHQIDHLNGKLYIDHLSPLKRKMLIAKSQKYL 164


>gi|225574496|ref|ZP_03783106.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038283|gb|EEG48529.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM
           10507]
          Length = 174

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+L +  RP+E++N     LID+ML+ MY   G+GLAA Q+GVL R+VV
Sbjct: 16  MALRQIRVEGDPVLTKKCRPVEEMNDRTRQLIDDMLDTMYEAMGVGLAAPQVGVLKRIVV 75

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INPKI+  S +     EGCLSIP    +V R  ++     + N +
Sbjct: 76  IDVGE-----GPLVMINPKIVETSGE-QTGDEGCLSIPGMAGEVTRPNYVKAIAFNENME 129

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +    LLA  + HE DHL+GI++  H++
Sbjct: 130 EFEVEGTELLARAICHECDHLDGIMYTAHVN 160


>gi|124024845|ref|YP_001013961.1| peptide deformylase [Prochlorococcus marinus str. NATL1A]
 gi|158512738|sp|A2BZN6|DEF_PROM1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123959913|gb|ABM74696.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           NATL1A]
          Length = 202

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 2/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D  LR  +  I K++  I  L  +ML  MYS+ GIGLAA Q+G+  RL+VIDL  
Sbjct: 33  VYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVIDLNF 92

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 PMVFINP+II+ S     Y+EGCLSIP    +V R + I + Y D   + + + 
Sbjct: 93  EDPNSPPMVFINPEIISSSATVDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKKMN 152

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGL+A C+QHE+DHLNG+ F+D ++    + + K++++
Sbjct: 153 ADGLMARCIQHEIDHLNGVCFVDKVTDE--EELKKQLNE 189


>gi|261405798|ref|YP_003242039.1| peptide deformylase [Paenibacillus sp. Y412MC10]
 gi|261282261|gb|ACX64232.1| peptide deformylase [Paenibacillus sp. Y412MC10]
          Length = 164

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PD +L + ++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+V
Sbjct: 1   MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D       +  INP+I+  S+      EGCLSIP +  DV+R+  +TV+ +D    
Sbjct: 61  IDAGD---EHGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +I   GLLA   QHE+DHLNG+LF +   R+
Sbjct: 117 ELVITGTGLLARAFQHEIDHLNGVLFTEIADRV 149


>gi|170078943|ref|YP_001735581.1| peptide deformylase [Synechococcus sp. PCC 7002]
 gi|238689048|sp|B1XJP0|DEF_SYNP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169886612|gb|ACB00326.1| peptide deformylase [Synechococcus sp. PCC 7002]
          Length = 187

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 61/143 (42%), Positives = 86/143 (60%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I K++ +I  L   ML+ MYS+ GIGLAA Q+GV  RL+VID      
Sbjct: 22  LGDKVLRQKAKRIAKVDDEIRTLAKEMLQTMYSSQGIGLAAPQVGVNKRLIVIDTDPENP 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+V INP+I  F      ++EGCLSIP    DV R   I V Y D   + + I A G
Sbjct: 82  ANAPLVLINPEIKKFGQQLCPFEEGCLSIPGVHLDVIRPDEIEVSYRDEQGKPKRIKASG 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LL+  +QHE+DHL+G++F+D + 
Sbjct: 142 LLSRVIQHEIDHLDGVMFVDRVE 164


>gi|123967617|ref|YP_001008475.1| peptide deformylase [Prochlorococcus marinus str. AS9601]
 gi|158513947|sp|A2BNK7|DEF_PROMS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123197727|gb|ABM69368.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           AS9601]
          Length = 201

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 65/160 (40%), Positives = 98/160 (61%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ S+ I K++  I  L   ML+ MY+  GIGLAA QIG+   L+VID+ 
Sbjct: 32  DIYKLGDDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDVN 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INP+I  F    + Y+EGCLSIP    +V R + I +++ D   + + +
Sbjct: 92  FEDSAAEPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHE+DHLNGILF+D ++   +D + K++ K
Sbjct: 152 KADGLLARCIQHEMDHLNGILFVDRVTS--KDDLNKELLK 189


>gi|294141147|ref|YP_003557125.1| polypeptide deformylase [Shewanella violacea DSS12]
 gi|293327616|dbj|BAJ02347.1| polypeptide deformylase [Shewanella violacea DSS12]
          Length = 163

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 106/167 (63%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R +R +E I+S +   ID++LE +Y T DGIGLAA Q+G  + ++
Sbjct: 1   MAVLDILTIPDERLKRKARTVEDIDS-VQGFIDDLLETLYDTEDGIGLAATQVGSEHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  P V INP+I+    DF + +EGCLSIP YRA V RS  +TV+ +D   
Sbjct: 60  VIDLSE--ERDQPQVLINPEIVATQGDF-IGEEGCLSIPGYRAKVARSEQVTVKALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +   I  D  LA  LQHE+DHL GI+F DHLS+LK+ +  KK+ K V
Sbjct: 117 KPFEIETDTFLAIVLQHEMDHLQGIVFTDHLSKLKQQIALKKVKKYV 163


>gi|302866831|ref|YP_003835468.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315503246|ref|YP_004082133.1| peptide deformylase [Micromonospora sp. L5]
 gi|302569690|gb|ADL45892.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315409865|gb|ADU07982.1| peptide deformylase [Micromonospora sp. L5]
          Length = 186

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   ++++  LI ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDAELRKLIADLTDTMREQSGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLSIP    D KR   +  +  +    
Sbjct: 61  FDVDDVLG-----HLVNPVLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVIAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I   GL+A C+QHE DHL+G+LF+D L    R    K + +   
Sbjct: 116 PLQIVGTGLMARCVQHETDHLDGVLFVDRLDAAGRKEAMKAIRQAEW 162


>gi|254302996|ref|ZP_04970354.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323188|gb|EDK88438.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 174

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 101/169 (59%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ 
Sbjct: 1   MVYEIKKYGEDVLKQIAKEVEINEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D  +   RK     INP I+  +++   ++EGCLS+P     V+R   + ++Y++   
Sbjct: 61  VCDDGNGVVRK----VINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILF++ +S + + +I KK++ + + 
Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANMKKE 165


>gi|89895440|ref|YP_518927.1| hypothetical protein DSY2694 [Desulfitobacterium hafniense Y51]
 gi|123091730|sp|Q24U09|DEF_DESHY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|89334888|dbj|BAE84483.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 150

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V     +LR  + P+++I  +I  L+DNML+ +Y  +G+GLAA Q+GV  R+VV
Sbjct: 1   MAIYQIVEIGSEVLREKAVPVKEITPNIEKLLDNMLDTLYDANGVGLAAPQVGVSKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP II    +  +  EGCLSIP     V R+A + V  ++   +
Sbjct: 61  IDVGE-----GPIELINPVIIAKEGE-DLDDEGCLSIPGITGQVARAAKVKVEALNRQGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            Q+I  +GLLA CLQHE+DHL GILF+D   + +R 
Sbjct: 115 LQVIEGEGLLARCLQHEIDHLEGILFVDKAKKTQRR 150


>gi|302037138|ref|YP_003797460.1| peptide deformylase [Candidatus Nitrospira defluvii]
 gi|300605202|emb|CBK41535.1| Peptide deformylase [Candidatus Nitrospira defluvii]
          Length = 176

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +    +PILR+ + P+       +    LID+M E MY   GIGLAA Q+G   +
Sbjct: 1   MAILAISKLGNPILRQKAVPLTPAEIKKASFQQLIDDMFETMYDEPGIGLAAPQVGRSQQ 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           LVV+D           V INP I  +  +     EGCLS+   R  V R + + V  +D 
Sbjct: 61  LVVMDCPGEGGFP-KTVLINPTIQFYGPEQVEGWEGCLSVDGLRGKVTRPSTVRVTGLDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           NA+     A GL A C+QHELDHL G LFID ++         +  K
Sbjct: 120 NAKPFDFEASGLYAVCIQHELDHLIGKLFIDRMTDFSTLTQMDEFQK 166


>gi|119716668|ref|YP_923633.1| peptide deformylase [Nocardioides sp. JS614]
 gi|119537329|gb|ABL81946.1| peptide deformylase [Nocardioides sp. JS614]
          Length = 181

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIQPIRLFGDPVLRKPAIEVVDFDKELRRLVADLTDTMMDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +        P   +NP++   SD+     EGCLSIP    D +R+     R  +    
Sbjct: 61  WYVDG-----EPGHLVNPQLD-LSDELQDGPEGCLSIPGLSVDCQRAMAAVARGFNMYGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  LQHE DHL+G+LFID L    R    K + +
Sbjct: 115 PVTIEGTELLARALQHETDHLDGVLFIDRLDTEARKAAMKAIRE 158


>gi|255656564|ref|ZP_05401973.1| peptide deformylase 2 [Clostridium difficile QCD-23m63]
 gi|296449984|ref|ZP_06891748.1| peptide deformylase [Clostridium difficile NAP08]
 gi|296878365|ref|ZP_06902373.1| peptide deformylase [Clostridium difficile NAP07]
 gi|296261254|gb|EFH08085.1| peptide deformylase [Clostridium difficile NAP08]
 gi|296430663|gb|EFH16502.1| peptide deformylase [Clostridium difficile NAP07]
          Length = 146

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 60/152 (39%), Positives = 96/152 (63%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +EKI+  I+ L+D+M E MY  DG+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II  S +  + +EGCLS+     +V+R  ++ VR ++ N +
Sbjct: 61  IDIGE-----ELIELINPEIIETSGE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  + LLA    HELDHL+GILF+D + +
Sbjct: 115 TIELEGEELLARAFCHELDHLDGILFVDKIEK 146


>gi|255019795|ref|ZP_05291871.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
 gi|254970724|gb|EET28210.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
          Length = 171

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 98/164 (59%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M   P++ +PDP L R + P+E+ + ++ + + ++ E MY+  G +G+AA Q+  L R+V
Sbjct: 1   MAVLPILTYPDPRLHRKAEPVEQFDEELRSFVADLTETMYAGPGGVGIAAPQVDRLQRIV 60

Query: 60  VIDLQDHAHRK--NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++D++          +  INP++I + +  +V +EGC+S+PD+  +V R+  I V+  D 
Sbjct: 61  LVDVRPKLGDDCHGFLCLINPELIAW-EGMAVGREGCMSVPDFTGNVIRAERIQVQAQDL 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           + + +I    G  A  +QHE+DHL+G LF+D L   K D+  +K
Sbjct: 120 DGRSRIFECAGFEARAVQHEMDHLDGFLFLDRLVSRKTDLFRRK 163


>gi|72383267|ref|YP_292622.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
 gi|123773734|sp|Q46HV9|DEF_PROMT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|72003117|gb|AAZ58919.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
          Length = 202

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 98/159 (61%), Gaps = 2/159 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D  LR  +  I K++  I  L  +ML  MYS+ GIGLAA Q+G+  RL+VIDL+ 
Sbjct: 33  VYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVIDLKF 92

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 PMVFINP+II+ S     Y+EGCLSIP    +V R + I + Y D   + + + 
Sbjct: 93  EDPNSPPMVFINPEIISSSATLDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKKMN 152

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ADGL+A C+QHE+DHLNG+ F+D ++    + + K++++
Sbjct: 153 ADGLMARCIQHEIDHLNGVCFVDKVTDE--EELKKQLNE 189


>gi|256789194|ref|ZP_05527625.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|23396573|sp|Q9FCA2|DEF2_STRCO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
          Length = 179

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 78/167 (46%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +     ++  L++++   MY+  G+GLAA Q+G   R+ V D
Sbjct: 13  VRPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 73  CPDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   G  A CLQHE DHL G ++ D L+  +   + +++++    R
Sbjct: 133 TVRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVARASWHR 179


>gi|219669870|ref|YP_002460305.1| peptide deformylase [Desulfitobacterium hafniense DCB-2]
 gi|254767579|sp|B8FS81|DEF_DESHD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219540130|gb|ACL21869.1| peptide deformylase [Desulfitobacterium hafniense DCB-2]
          Length = 150

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V     +LR  + P+++I  +I  L+DNML+ +Y  +G+GLAA Q+GV  R+VV
Sbjct: 1   MAIYQIVEIGSEVLREKAVPVKEITPNIAKLLDNMLDTLYDANGVGLAAPQVGVSKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP II    +  +  EGCLSIP     V R+A + V  ++   +
Sbjct: 61  IDVGE-----GPLELINPVIIAKEGE-DLDDEGCLSIPGITGQVARAAKVKVEALNRQGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            Q+I  +GLL+ CLQHE+DHL GILF+D   +  R 
Sbjct: 115 LQVIEGEGLLSRCLQHEIDHLEGILFVDKAKKTSRR 150


>gi|238916653|ref|YP_002930170.1| hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750]
 gi|238872013|gb|ACR71723.1| Hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750]
          Length = 171

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR  ++ I ++   I  LID+M + MY  +G+GLAA Q+G+  RLVV
Sbjct: 15  MAIRNIRTLGDDILRAKAKEITEMTPRIEELIDDMFDTMYEANGVGLAAPQVGIRKRLVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D     +P+V INP ++  S       EGCLS+P    +V R  +  V+ ++ N +
Sbjct: 75  IDCGD-----DPIVLINPVVLETSGS-QTGLEGCLSVPGKTGEVTRPNYAKVKALNENME 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I+  + LLA CL HE+DHL+GI+++D + 
Sbjct: 129 EIIVEGEELLARCLLHEIDHLDGIMYVDKVE 159


>gi|315646177|ref|ZP_07899297.1| peptide deformylase [Paenibacillus vortex V453]
 gi|315278376|gb|EFU41692.1| peptide deformylase [Paenibacillus vortex V453]
          Length = 164

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 7/166 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PD +L + ++ + KI  ++  L+D+M + MY  DG+GLAA Q+G+L RL+V
Sbjct: 1   MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDADGVGLAAPQVGILKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D       +  INP+I+  S+      EGCLSIP +  DV+R+  +TV+ +D    
Sbjct: 61  IDAGD---EHGLIKMINPEIVE-SEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI---DHLSRLKRDMITKKMS 163
             I+   GLLA   QHE+DHLNG+LF    D +     +   K++ 
Sbjct: 117 ELIVTGTGLLARAFQHEIDHLNGVLFTEIADRVYEYVPEQPRKELE 162


>gi|332529198|ref|ZP_08405162.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
 gi|332041421|gb|EGI77783.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
          Length = 179

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV++P++  +  ++  L+ ++L+ M++ +G GLAA QIGV  R+V
Sbjct: 1   MAVRDILKMGDPRLLRVAQPVQAFDTDELHLLVSDLLDTMHAANGAGLAAPQIGVDLRVV 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      V  NP I   SD+     EGCLS+P  R  V R   I  +
Sbjct: 61  IFGSGQTNPRYPDAPVVPRTVLCNPVITPLSDEEQHDWEGCLSVPGLRGVVPRWQRIRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D          +G  A  +QHE DHL+G L+   +    R   T+ +
Sbjct: 121 GFDQYGDPIDRTVEGFHARVVQHECDHLDGKLYPMRVRDFTRFGFTEVL 169


>gi|126695417|ref|YP_001090303.1| peptide deformylase [Prochlorococcus marinus str. MIT 9301]
 gi|126542460|gb|ABO16702.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 201

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 65/160 (40%), Positives = 98/160 (61%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ S+ I K++  I  L   ML+ MY+  GIGLAA QIG+   L+VID+ 
Sbjct: 32  DIYKLGDDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDVN 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INP+I  F    + Y+EGCLSIP    +V R + I +++ D   + + +
Sbjct: 92  FEDSAAEPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHE+DHLNGILF+D ++   +D + K++ K
Sbjct: 152 KADGLLARCIQHEMDHLNGILFVDRVTS--KDDLNKELLK 189


>gi|295394412|ref|ZP_06804636.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972764|gb|EFG48615.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 193

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 6/171 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V++ +P+L R + P+ +   ++  L+ +M E + +++G+GLAA QIGV  ++ V
Sbjct: 1   MAIHPIVVYGEPVLHRKADPVTEFGDELHTLVADMYETLTASNGVGLAAPQIGVGKQIYV 60

Query: 61  IDLQDH-AHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D  A  +   VFINP     K+ T + D S   EGCLS+P     +KR+  +TV  
Sbjct: 61  YDADDEVAGVRRRGVFINPVLVASKVPTTNPDPSEDTEGCLSVPVLDYPLKRADKVTVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +D N Q   +  +G  A  +QHE DHL+G L++D L         K+  K 
Sbjct: 121 VDENNQPVSLSVEGWFARIMQHEFDHLHGTLYVDRLDTRWAKRWKKEQKKH 171


>gi|148245003|ref|YP_001219697.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326830|dbj|BAF61973.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA]
          Length = 180

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 109/180 (60%), Gaps = 15/180 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +PD  LR  ++ +  +N  I  LI NM E MY+ +GIGLAA Q+    ++VVI
Sbjct: 1   MILPILSYPDKRLRIKAKNVNIVNKTIQTLIKNMFETMYARNGIGLAATQVNQHLQIVVI 60

Query: 62  DLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           D+ +                 +++P+ FINP+I         + EGCLS+ D++A+++R+
Sbjct: 61  DVPNSQFLFKNRKNNSQKLLQKQHPLCFINPEIKEKYG-QEKHTEGCLSVSDFQAEIQRA 119

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I V+ ++   +  I+ A GLLA C+QHE+DHL GILF+D+LS+LK+  + +++ K+ +
Sbjct: 120 NHIKVKALNEKGEIFILQATGLLAICIQHEIDHLKGILFVDYLSKLKQKRLLERIKKMTK 179


>gi|295840257|ref|ZP_06827190.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|295827867|gb|EDY45695.2| peptide deformylase [Streptomyces sp. SPB74]
          Length = 196

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 76/167 (45%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +   P+L   +R        +  L++++   MY+  G+GLAA QIG   RL V D
Sbjct: 26  VRPLSLHGAPVLTTPARESGDFGPRLEKLVEDLFATMYAARGVGLAAPQIGEGVRLFVYD 85

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A   R     V     +   +
Sbjct: 86  CPDDEDERHLGHLVNPRLVEVDGPLVRGPEGCLSLPGLEAATPRFDRAVVEGRTADGTRR 145

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   G  A CLQHE DHL G L++D L   +R  + ++  +    R
Sbjct: 146 RVEGTGFFARCLQHEYDHLEGGLYVDRLDPRRRRKVLREAGRTTWGR 192


>gi|295836587|ref|ZP_06823520.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|197697279|gb|EDY44212.1| peptide deformylase [Streptomyces sp. SPB74]
          Length = 210

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ +  +P+L +    +     ++  L+D+M     + +G+GLAA Q+GV  ++ V D
Sbjct: 35  VLPITVVGNPVLHKECADVTDFGPELAKLVDDMFASQRAAEGVGLAANQVGVSLKVFVYD 94

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCNA 119
            QD    ++  V  NPK+     +        EGCLS+P   A   R+ +  V   D + 
Sbjct: 95  CQDDQGERHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHG 154

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               +   G  A CLQHE DHL G L++D LS+  R    K+M++
Sbjct: 155 NAIKVRGTGYFARCLQHETDHLYGSLYLDRLSKRDRKDALKQMAE 199


>gi|160947099|ref|ZP_02094266.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270]
 gi|158446233|gb|EDP23228.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270]
          Length = 164

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 71/148 (47%), Positives = 95/148 (64%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+LR+ +R +E I+  I NL+++M E MY++DG+GLA  QIG+L RLV 
Sbjct: 1   MALRNIRIDDDPVLRKKARKVEVIDDKIKNLLEDMAETMYNSDGVGLACPQIGILKRLVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       +  INP+I+  S +  V  EGCLSIPD R  VKR   +  +Y D +  
Sbjct: 61  IDVGD---EHGLLKMINPEILESSGE-QVGPEGCLSIPDVRGFVKRPEKVKFKYTDVDEN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            QII A GLLA C+ HE+DHLNGILF D
Sbjct: 117 EQIIDATGLLAVCICHEIDHLNGILFTD 144


>gi|157375143|ref|YP_001473743.1| peptide deformylase [Shewanella sediminis HAW-EB3]
 gi|157317517|gb|ABV36615.1| Peptide deformylase [Shewanella sediminis HAW-EB3]
          Length = 163

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 5/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P++ I   +   ID++L+ MY T DGIGLAA Q+G L+ ++
Sbjct: 1   MAVLDILTIPDERLKRKAQPVKDI-ESVQGFIDDLLDTMYDTEDGIGLAATQVGSLHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL     R  P V INP+II    DF V +EGCLSIP YRA V RS  + ++ +D   
Sbjct: 60  VIDLSP--ERDQPQVLINPEIIEAEGDF-VGEEGCLSIPGYRAKVTRSEKVKIKALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               I  D  LA  +QHE++HL G++F DHLS+LK+ +  KK+SK
Sbjct: 117 TPFEIETDTFLAIVIQHEMEHLQGVVFTDHLSKLKQQIALKKVSK 161


>gi|307328361|ref|ZP_07607537.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306885934|gb|EFN16944.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 170

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 70/145 (48%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
               DP LR     +   ++++  LI++M   MY+  G+GLAA QIGV  R+ V D  D 
Sbjct: 2   RFLGDPGLRAPCAEVTAFDAELALLIEDMYATMYAAHGVGLAANQIGVGLRVFVFDCPDD 61

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
              ++    +NP++           EGCLS+P   A   R     +  +    +   I  
Sbjct: 62  EDHRHLGHVVNPRLAAADGVNVHGPEGCLSLPGIEAGTSRYDRAVIEGVTMTGEPVRIEG 121

Query: 127 DGLLATCLQHELDHLNGILFIDHLS 151
            G  A CLQHE DHL+G LF+D LS
Sbjct: 122 TGFFARCLQHECDHLDGGLFLDRLS 146


>gi|152981418|ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
           Marseille]
 gi|151281495|gb|ABR89905.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
           Marseille]
          Length = 178

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV+ P+++    ++  LI++M + M++ +G GLAA QIGV  RLV
Sbjct: 1   MTVREILKMGDPRLLRVAEPVKEFGTPELDALIEDMFDTMHAANGAGLAAPQIGVNLRLV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +   +       A      V INPK+   S +     EGCLS+P  R  V R + +    
Sbjct: 61  IYGFKQNTRYPDAPPVPETVLINPKLRPLSAEMEDGWEGCLSVPGLRGVVPRFSALHYDG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            D         ADG  A  +QHE DHL+GIL+   ++ L
Sbjct: 121 FDQYGNVISRDADGFHARVVQHECDHLDGILYPMRITDL 159


>gi|15888871|ref|NP_354552.1| peptide deformylase [Agrobacterium tumefaciens str. C58]
 gi|23396558|sp|Q8UF49|DEFL_AGRT5 RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|15156637|gb|AAK87337.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58]
          Length = 164

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L  +  P+   +  +  L+ ++++ M +  G+G+ A  IGVL R+ V
Sbjct: 1   MAIRPILPYPHAGLSGICAPVTVFDDHLRELVTDLIDTMRAAPGVGITAAHIGVLQRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L         + +INP+I + S     + EG +S+P +  +V+R + + VR+ D    
Sbjct: 61  LELTP----GTILTYINPEITSHSPQTMRHVEGSVSMPGFTDEVERPSTVEVRFQDITGA 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q   A+G  A C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 117 EQTETAEGFHAICIQHEIDQLDGIFWLKRLSRLKRDRLVKKWEK 160


>gi|330837393|ref|YP_004412034.1| peptide deformylase [Spirochaeta coccoides DSM 17374]
 gi|329749296|gb|AEC02652.1| peptide deformylase [Spirochaeta coccoides DSM 17374]
          Length = 167

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 4/165 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V   + +LRR + P++  ++ +  L+D+M + +    G+GLAA Q+GV  RL ++D++
Sbjct: 3   EIVTLGEDVLRRRAEPVKVFDAALRLLVDDMFDSLAQERGVGLAAPQVGVSQRLFIVDIE 62

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                    VFINP+II  S + + Y+EGCLSIP    DV R   IT++  D   +   +
Sbjct: 63  G----GEKGVFINPEIIETSMEQTPYEEGCLSIPGIWHDVVRPQRITMQAQDVTGKFFTV 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            ADG+ A  LQHE DHLNG LFID L+   +  +     K  + R
Sbjct: 119 KADGMFARVLQHEYDHLNGTLFIDRLNEQDKKKVLDAYEKKQKPR 163


>gi|167763509|ref|ZP_02435636.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC
           43183]
 gi|167698803|gb|EDS15382.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC
           43183]
          Length = 184

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+VV+
Sbjct: 1   MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL         ++     +IN  I+  S +    +EGCLS+P     VKR   I V+Y+D
Sbjct: 61  DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +        +G LA  +QHE DHL+G +FIDHLS L+R MI  K++ +++ +
Sbjct: 121 EDLVEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRRQMIKGKLNAMLKGK 173


>gi|220928951|ref|YP_002505860.1| peptide deformylase [Clostridium cellulolyticum H10]
 gi|219999279|gb|ACL75880.1| peptide deformylase [Clostridium cellulolyticum H10]
          Length = 159

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR++SRP++ I+  I+ L+++M + MY  DG+GLAA QIG+L R+VV
Sbjct: 1   MAYRQIRKDGDEVLRKISRPVDSIDKKILALLEDMADTMYRADGVGLAAPQIGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +       INP I+  S +     EGCLSIP     VKR   +T+RY D N +
Sbjct: 61  IDVGDGLYE-----MINPIILEQSGE-QDGMEGCLSIPGVLGKVKRPMKVTLRYTDRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I A    A  + HELDHL+GIL+ D   ++  +   ++M K
Sbjct: 115 SITIEAKEFFARAICHELDHLDGILYKDKAHKMYTEKELEEMQK 158


>gi|260904911|ref|ZP_05913233.1| peptide deformylase [Brevibacterium linens BL2]
          Length = 200

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI+ +P+L + +  I   + ++  LI +M E + +++G+GLAA QIGV  R+ V
Sbjct: 10  MAIHPIVIYGEPVLHQRAEKITDFDEELATLIADMHETLDASNGVGLAAPQIGVGKRIFV 69

Query: 61  IDLQDHA-HRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            + +D     +    FINP     K+     D     EGCLS+P     +KR+  +TV  
Sbjct: 70  FNAEDEEAGVRRRGTFINPLLIASKVPDTRPDPVEETEGCLSVPSLDFPLKRADRVTVNG 129

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           +D   Q   + A+G  A  +QHE DHL G L++D L +       K+
Sbjct: 130 LDETGQSVSLTAEGWFARIMQHEYDHLQGTLYVDRLDKRWSKKWKKE 176


>gi|297162299|gb|ADI12011.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 185

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 72/146 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +P+ +  DP+L      +   ++ +  L+++M   MY+  G+GLAA Q+GV  R+ V D
Sbjct: 13  VRPMRLLGDPVLATSCEEVTAFDAALGRLVEDMYATMYAAQGVGLAANQVGVALRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D   R++    +NP+++          EGCLS+P   A   R     V  +    +  
Sbjct: 73  CPDDEDRRHLGHVVNPRLVEADGVTVRGPEGCLSLPGIEAGTVRHDHAVVEGVTATGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
            +   G  A CLQHE DHL+G LF D
Sbjct: 133 RVEGTGFFARCLQHECDHLDGRLFTD 158


>gi|295399762|ref|ZP_06809743.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978165|gb|EFG53762.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 157

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +P  IL +   P+++ +  ++ L+++M + M   DG+GLAA Q+G+  ++ V
Sbjct: 1   MAILPIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R      INP+I+    +  +  EGCLS P   A+VKR+ ++ VR  D   +
Sbjct: 61  VDVGDEHGRIE---LINPRIMEARGE-QIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A G LA  LQHE+DHLNG+LF   + R
Sbjct: 117 PFTLKATGFLARALQHEIDHLNGMLFTSKVIR 148


>gi|312884517|ref|ZP_07744221.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367829|gb|EFP95377.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 171

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M   P++  PDP L+  +  +   +  + + ID+ML+ +YS  +GIGLAA Q+G    +V
Sbjct: 1   MAVLPILTTPDPRLKYEAEQVTDFDK-VQSFIDDMLDTLYSTANGIGLAATQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  P++ +NPK++    +  + QEGCLS+PDY ADV+R   + V+  D   
Sbjct: 60  VIDLSEA--RDQPLILVNPKVV-CGKNREMGQEGCLSVPDYYADVERFTSVVVQAQDRLG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               + +D  LA  +QHE+DHL+G LFID+LS LKR M  KK+ K ++
Sbjct: 117 NAIKVESDDFLAIVMQHEIDHLSGRLFIDYLSPLKRQMALKKVKKHIK 164


>gi|271964329|ref|YP_003338525.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270507504|gb|ACZ85782.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 182

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  + P++  + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIQSIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMMDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             + +          INP +    +     +EGCLS P       R+     + ++ + +
Sbjct: 61  YYVDEQLG-----HLINPNLDLSEEKDEEGEEGCLSFPGLSFPTPRAIRAVAKGLNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +    L+A C QHE DHL+G+LFID +   +R +  K++ +   
Sbjct: 116 PVTLEGTDLMARCFQHETDHLDGVLFIDRMDLKQRKLAMKEIREAEW 162


>gi|212709522|ref|ZP_03317650.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM
           30120]
 gi|212687860|gb|EEB47388.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM
           30120]
          Length = 168

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 100/158 (63%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+    + +  L+D+++E MYST +GIGLAA QI     ++
Sbjct: 1   MAVREIIEIPDERLRIQCSPVTDF-AAVQTLVDDLIETMYSTDNGIGLAATQIAETKAIM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +   R  PMVFINP+II  S+  + YQEGCLS+PD  ADV R   + V+  D + 
Sbjct: 60  VIDISE--ERNEPMVFINPEIIE-SEGETSYQEGCLSVPDVYADVPRFLRVKVKAFDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              ++ +D  LA  +QHE+DHLNG +FIDHLS LKR+M
Sbjct: 117 NEFVVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154


>gi|149913451|ref|ZP_01901984.1| peptide deformylase [Roseobacter sp. AzwK-3b]
 gi|149812571|gb|EDM72400.1| peptide deformylase [Roseobacter sp. AzwK-3b]
          Length = 165

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  + P+E I  ++  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MAVRRCLPWPDKRLRSPAAPVEAITDEVRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R   +   NP+I+  S +   ++E   ++P   A +KR   +TVR+++   +
Sbjct: 61  VDASET--RGQAVRMANPEILHSSIELRSHEEASPNLPGVSAAIKRPRAVTVRFLNTQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            +     GL AT +QH++D L G LF+D LS++KRDM+ +K  KL 
Sbjct: 119 MEERDFVGLWATSVQHQIDQLEGRLFVDRLSKVKRDMLLRKARKLA 164


>gi|149370599|ref|ZP_01890288.1| peptide deformylase [unidentified eubacterium SCB49]
 gi|149356150|gb|EDM44707.1| peptide deformylase [unidentified eubacterium SCB49]
          Length = 196

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+L+++++ I+K   ++  L+ NM E MY+  G+GLAA QIG+  R+ ++
Sbjct: 1   MILPIVAYGAPVLKKLAKDIDKDYPELDELLANMYETMYNASGVGLAAPQIGLPIRIFIV 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    +                   FIN KII  + D   + EGCLSIPD R DV R   
Sbjct: 61  DASPFSDDDELDPAEQEFLSTFKQTFINAKIIEETGDEWAFNEGCLSIPDVREDVFRKPD 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + Y D + +       GL A  +QHE DH+ GILF D LS+LK+ +I +++  + + +
Sbjct: 121 IVIEYYDEDFKKHTEKFTGLAARVIQHEYDHIEGILFTDKLSQLKKRLIKRRLEDISKGK 180


>gi|302380585|ref|ZP_07269050.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3]
 gi|302311528|gb|EFK93544.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3]
          Length = 162

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 3/160 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+ SR +EKI+  I  + ++M E MY   GIGLA VQ+G+L R+VV
Sbjct: 1   MALRQIRLENDPILRKKSREVEKIDDRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD   +   MV INPKII  S+D  +  EGCLS+P     V+R   + V Y D N  
Sbjct: 61  IDMQDEDGK---MVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            Q +      A C  HELDHL+G+L+ D +  L  + + +
Sbjct: 118 TQRVTGTDYKAHCFCHELDHLDGVLYTDKVLNLSEEEVER 157


>gi|281420284|ref|ZP_06251283.1| peptide deformylase [Prevotella copri DSM 18205]
 gi|281405586|gb|EFB36266.1| peptide deformylase [Prevotella copri DSM 18205]
          Length = 185

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 6/173 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+  P+LR+V+  I     D+  LI+NM E + S++GIGLAA QIG+  RLVVI
Sbjct: 1   MILPIYIYGQPVLRKVAEDITPDYPDLKVLINNMYETLDSSNGIGLAAPQIGLPIRLVVI 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL         ++     FIN  I+   ++     +EGCLSIP     V R   I V+YM
Sbjct: 61  DLDVLSEDFPEYKGFRHAFINAHILERDEENTDSSEEGCLSIPGINEKVVRPTRIHVKYM 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D +      + +G LA  +QHE DHL G +F+D +S L+++MI  K+  +++ 
Sbjct: 121 DEDFNEHDEWIEGYLARVMQHEFDHLEGTMFVDRVSPLRKNMIAGKLKSIIKG 173


>gi|291563557|emb|CBL42373.1| peptide deformylase [butyrate-producing bacterium SS3/4]
          Length = 158

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D IL +  +P++++N   + LI++M E MY  +G+GLAA Q+GV  R+VV
Sbjct: 1   MAIRQIRTIGDEILTKECKPVKEMNERTLELIEDMFETMYENNGVGLAAPQVGVRKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D     N  V INP+I+  S      QEGCLS+P     V R+  +  + ++ N +
Sbjct: 61  IDVED----GNQYVLINPEILETSGS-QTGQEGCLSVPGKCGQVTRADHVKAKALNENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I ADGLLA C+ HE DHL+G L++D +    +D  
Sbjct: 116 EYEIEADGLLARCILHECDHLDGKLYVDLVEGELQDTA 153


>gi|127513031|ref|YP_001094228.1| peptide deformylase [Shewanella loihica PV-4]
 gi|126638326|gb|ABO23969.1| peptide deformylase [Shewanella loihica PV-4]
          Length = 163

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 71/165 (43%), Positives = 104/165 (63%), Gaps = 5/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R ++P+E I + +   ID+++E MY TD GIGLAA Q+G  + ++
Sbjct: 1   MPVLDILTIPDERLKRKAKPVEDI-AAVQGFIDDLIETMYHTDDGIGLAATQVGSEHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  PMV INP+ +  S +  V +EGCLSIP YRA V R   + V+ ++   
Sbjct: 60  VIDLSE--DRDQPMVVINPEFVERSGEI-VGEEGCLSIPGYRAKVTRFEKVKVKALNREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   I +D  LA  LQHE+DHL+G +FI+HLS LK+ +  KK+ K
Sbjct: 117 EAFEIESDDFLAIVLQHEMDHLDGKVFIEHLSPLKQQIALKKVKK 161


>gi|156097168|ref|XP_001614617.1| formylmethionine deformylase [Plasmodium vivax SaI-1]
 gi|148803491|gb|EDL44890.1| formylmethionine deformylase, putative [Plasmodium vivax]
          Length = 186

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 57/163 (34%), Positives = 95/163 (58%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V++PDP+LR+    +   + ++  L+ +M  VMY + G+GLAA Q+ +  R++V + L 
Sbjct: 12  IVLYPDPVLRKKCDEVVHFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISRRIIVWNALY 71

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   ++N  VFINP I+  S   S   EGCLS PD    V R + +++ Y D +    + 
Sbjct: 72  EKKKKENERVFINPSIVEPSLVRSKLVEGCLSFPDIEGKVDRPSVVSISYYDLDGNKHLK 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ A   QHE DHL+G+LFID  S+ +R  +  K++ L++
Sbjct: 132 ILKGIHARIFQHEYDHLDGVLFIDRFSQSERHKVRAKLNALIR 174


>gi|86610195|ref|YP_478957.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558737|gb|ABD03694.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 196

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 61/146 (41%), Positives = 90/146 (61%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+ ++ I ++N +I  L  +ML+ MYS DGIGLAA Q+G+  R++V+DL  
Sbjct: 21  IYRMGDKVLRQPAKRISQVNDEIRQLARDMLQTMYSFDGIGLAAPQVGIPKRMIVVDLYP 80

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+V INP+I  +  +    QEGCLSIP    +V R   I V + D   + + + 
Sbjct: 81  DKPEVPPLVLINPEIREYIGEAVAGQEGCLSIPGVFCEVMRPEGIVVSFKDETGRPRTLR 140

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
           AD LLA  +QHE+DHLNG+LF+DH+ 
Sbjct: 141 ADDLLARVIQHEIDHLNGVLFVDHVE 166


>gi|262038785|ref|ZP_06012139.1| peptide deformylase [Leptotrichia goodfellowii F0264]
 gi|261747196|gb|EEY34681.1| peptide deformylase [Leptotrichia goodfellowii F0264]
          Length = 170

 Score =  189 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 96/163 (58%), Gaps = 5/163 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++  P LR  S  ++ ++ ++  ++D M+E M   +G+GLAA Q+ +  R  V+++++
Sbjct: 3   IVLYEHPTLRTKSTEVDIVDDELRKILDEMVETMRKANGVGLAANQVDIPKRFFVLEVEN 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +      +NP+II  SD+   Y+EGCLSIP     V R + I V+Y++   +  I  
Sbjct: 63  KVKK-----IVNPEIIESSDEIIEYEEGCLSIPGIYKKVNRPSEIKVKYLNEKGEEVIEE 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A   QHELDHL+G+LFID +S L + +I+KK+  + + 
Sbjct: 118 LKEMWARAFQHELDHLDGVLFIDRISVLNKRLISKKLELMKKE 160


>gi|254431727|ref|ZP_05045430.1| peptide deformylase [Cyanobium sp. PCC 7001]
 gi|197626180|gb|EDY38739.1| peptide deformylase [Cyanobium sp. PCC 7001]
          Length = 183

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/149 (42%), Positives = 88/149 (59%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR  +R I K++  +  L  +ML  MY+  GIGLAA Q+GV  +L+VIDL 
Sbjct: 14  EIHTLGDAVLRTPARRISKVDEAVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDLD 73

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  PMV INP+I +F      Y+EGCLSIP    +V R   + V + D   + Q +
Sbjct: 74  PDNPATPPMVLINPEIRSFGGSLDTYEEGCLSIPGVYLNVVRPTAVEVSFRDEMGRPQKL 133

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153
             DGLLA C+QHE+DHLNG+LF+D ++  
Sbjct: 134 RTDGLLARCIQHEMDHLNGVLFVDRVTDE 162


>gi|256827225|ref|YP_003151184.1| peptide deformylase [Cryptobacterium curtum DSM 15641]
 gi|256583368|gb|ACU94502.1| peptide deformylase [Cryptobacterium curtum DSM 15641]
          Length = 175

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/155 (38%), Positives = 86/155 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V+ PDPILR+ +   +  +  + +L   M E MY  +G GLAA Q+GVL RL+VID   
Sbjct: 3   IVLSPDPILRQRAEEADIADESLKSLAQQMAETMYENNGCGLAAPQVGVLKRLIVIDCDT 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            +  +NP+  INP I+  + ++    EGCLS+P     ++R AF  V Y D +     I 
Sbjct: 63  ESEERNPITLINPVILETAGEWETEGEGCLSVPGITVPIRRRAFARVEYRDLDGNVCTIE 122

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            DGLL  CLQHE+DHLNG    +    + R    +
Sbjct: 123 GDGLLGRCLQHEIDHLNGKTLFESCDPITRIAALR 157


>gi|239939651|ref|ZP_04691588.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           15998]
 gi|239986135|ref|ZP_04706799.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           11379]
          Length = 181

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 71/149 (47%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+L R    +      +  LI++M   MY+  G+GLAA QIGV  ++ V D
Sbjct: 13  VREMSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V  +    +  
Sbjct: 73  CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            I   G  A CLQHE DHL G ++ D L+
Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYPDRLT 161


>gi|110597712|ref|ZP_01385996.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031]
 gi|110340619|gb|EAT59099.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031]
          Length = 186

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+ D ILR+ ++P++ I+S I  LI +M E M + +GIGLAA Q+G   RL+V+
Sbjct: 1   MILPINIYSDDILRQKAKPLKGIDSTIEALIASMFESMRNAEGIGLAAPQVGHSVRLLVL 60

Query: 62  DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DL    +  N  PMV INP I+  S   +V +EGCLSIP    DV+R A I+++Y D + 
Sbjct: 61  DLSCIDNYANEKPMVVINPHILAVSG-CNVMEEGCLSIPGVNGDVERPAVISLKYRDEHF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             +     G+LA  LQHE+DHL+G LF+D + +  R  I K+++ + 
Sbjct: 120 LERTREFSGMLARALQHEIDHLDGTLFVDRMEKRSRKKIQKELTDIA 166


>gi|78187332|ref|YP_375375.1| formylmethionine deformylase [Chlorobium luteolum DSM 273]
 gi|123730026|sp|Q3B2U9|DEF_PELLD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78167234|gb|ABB24332.1| peptide deformylase [Chlorobium luteolum DSM 273]
          Length = 190

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + D +L + ++P++ +++DI +LID+M E M +  GIGLAA Q+G   RL+V+
Sbjct: 1   MILPINTYSDEVLHQKAKPLKGVDADISSLIDSMFESMENASGIGLAAPQVGCSIRLLVL 60

Query: 62  DLQDHA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D+          PMV INP ++      ++ +EGCLS+P  + DV R + IT++Y D N 
Sbjct: 61  DVSCMKSYEDVPPMVVINPNVLAVRG-KNLMEEGCLSVPGVQGDVLRPSEITLKYRDRNF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Q       G+LA  LQHE+DHLNG LF+D + +  R  I +++  + 
Sbjct: 120 QEHTEEFSGMLARVLQHEIDHLNGTLFVDRMEKRDRRRIQQELDDIA 166


>gi|227549209|ref|ZP_03979258.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078663|gb|EEI16626.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 166

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 5/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+L     P+ + +  +  L+ ++L  M    G+GLAA Q+GV  R+ V
Sbjct: 1   MAVRPIRLFGDPVLNSAVAPVTRFDEALRVLVCDLLNTMDDAGGVGLAANQVGVDARVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D Q           INP   +  D+  + +EGCLS+P     V R   +  R +D + +
Sbjct: 61  FDCQGMRG-----HIINPSWASAGDEVQIGREGCLSVPGISGPVSRYNRVVARGVDADGR 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              I   GLLA C+QHE DHL+GI+F+  +    R    
Sbjct: 116 PLAISGTGLLARCIQHESDHLDGIMFMRRMDSAARKEAM 154


>gi|189499854|ref|YP_001959324.1| peptide deformylase [Chlorobium phaeobacteroides BS1]
 gi|238692288|sp|B3EPG5|DEF_CHLPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189495295|gb|ACE03843.1| peptide deformylase [Chlorobium phaeobacteroides BS1]
          Length = 185

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 105/170 (61%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + D +LRR ++P+++ ++ +  LI NMLE M + +GIGLAA Q+GV  RL+V+
Sbjct: 1   MILPINTYSDEVLRRKAKPLKESDAQLEELISNMLESMRNAEGIGLAAPQVGVSLRLIVV 60

Query: 62  DLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DL   +     +PMV INP I++    F+  +EGCLSIPD R DV R + I ++Y D N 
Sbjct: 61  DLSLAEGYEAASPMVVINPHILSVK-SFNSMEEGCLSIPDVRGDVVRPSAIQLKYRDRNF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +  I   D L A  +QHE+DHL+G LF+D + R  R  I K++  L +  
Sbjct: 120 EECIGEFDRLAARVIQHEIDHLDGTLFVDRMQRRDRRKIQKELDALSRGE 169


>gi|225628893|ref|ZP_03786927.1| peptide deformylase [Brucella ceti str. Cudo]
 gi|225616739|gb|EEH13787.1| peptide deformylase [Brucella ceti str. Cudo]
          Length = 214

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 51  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A  K   ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 111 LELDRAAGSK---IYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 214


>gi|226310454|ref|YP_002770348.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
 gi|226093402|dbj|BAH41844.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
          Length = 171

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/151 (43%), Positives = 97/151 (64%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  K ++ F DPILR+V++P+E++N     L+D M E +Y+ DG  GLAA QIG+L R+V
Sbjct: 1   MAVKQILPFGDPILRKVAKPVEELNEKTFKLLDEMAETLYAADGRAGLAAPQIGILRRVV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  D       +  INP+II  S +  +  E CLS P Y  +VKR+  + V+ ++   
Sbjct: 61  VMDCGD-----GLIELINPEIIERSGE-QIGMEACLSFPGYYGNVKRAEHVKVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  I+  DG LA C+QHE+DHL+GILF+DH+
Sbjct: 115 EEMILAGDGFLAVCMQHEIDHLDGILFVDHV 145


>gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase
           [Herbaspirillum seropedicae SmR1]
 gi|300074269|gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R ++P+ +    ++  L+D+M + M + +G GLAA QIGV  +LV
Sbjct: 1   MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP +   S+      EGCLS+P  R  V R + +  + 
Sbjct: 61  IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +D N +      +G  A  +QHE DHL GIL+   +   +R   T+ +
Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVL 168


>gi|330881833|gb|EGH15982.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 136

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 2/136 (1%)

Query: 33  DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQE 92
           D+M E MY   GIGLAA Q+ V  R+VV+DL +   R  PMVFINP+I   +D+   YQE
Sbjct: 1   DDMFETMYEAPGIGLAATQVNVHKRVVVMDLSE--DRSEPMVFINPEIEKLTDEMDQYQE 58

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           GCLS+P +  +V R   + V+ +D N +   + A+GLLA C+QHE DHLNG LF+D+LS 
Sbjct: 59  GCLSVPGFYENVDRPQKVRVKALDRNGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSN 118

Query: 153 LKRDMITKKMSKLVQL 168
           LKRD I KK+ K  +L
Sbjct: 119 LKRDRIKKKLEKQHKL 134


>gi|17985009|gb|AAL54054.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M]
          Length = 203

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 40  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 99

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 100 LELDRAAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 156

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 157 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 203


>gi|297811599|ref|XP_002873683.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319520|gb|EFH49942.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 273

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 88/162 (54%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 83  IVEYPDPILRAKNKRIGVFDQNLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP I  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 143 EPGEGEEIVLVNPIIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              L A   QHE DHL G+LF D ++    D I +++  L +
Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 244


>gi|169824358|ref|YP_001691969.1| polypeptide deformylase [Finegoldia magna ATCC 29328]
 gi|238687734|sp|B0S139|DEF_FINM2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167831163|dbj|BAG08079.1| polypeptide deformylase [Finegoldia magna ATCC 29328]
          Length = 162

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 3/160 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+ SR +EKI+  I  ++++M E MY   GIGLA VQ+G+L R+VV
Sbjct: 1   MALRQIRLENDPILRKKSREVEKIDDRIKQIVEDMFETMYENKGIGLACVQVGMLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD   +   MV INPKII  S++  +  EGCLS+P     V+R   + V Y D N  
Sbjct: 61  IDMQDEDGK---MVLINPKIIEKSEEKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            Q +      A C  HELDHL+G+L+ D +  L  + + +
Sbjct: 118 TQRVMGTDYKAHCFCHELDHLDGVLYTDKVLNLSEEEVER 157


>gi|318040515|ref|ZP_07972471.1| peptide deformylase [Synechococcus sp. CB0101]
          Length = 200

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 92/153 (60%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR  ++ I K++  I +L  +ML  MY+  GIGLAA QIG   +L+VIDL+
Sbjct: 31  DIHTLGDQVLRTPAKRIGKVDDSIRSLARDMLVSMYAAKGIGLAAPQIGEPLQLLVIDLE 90

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               +  P++ INP+I +       Y+EGCLSIP    DV R + + V Y D   + + +
Sbjct: 91  IEDPKSPPLILINPEITSVGGSLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDEMGRPKRL 150

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            ADGL+A C+QHE+DHLNG+LF+D ++   +  
Sbjct: 151 KADGLMARCIQHEMDHLNGVLFVDRVTDHDKLR 183


>gi|39931120|sp|Q89N37|DEFL_BRAJA RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|27352266|dbj|BAC49270.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110]
          Length = 170

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV +PD  L   +RP+   + ++  L  ++L+ M +  GIG+ A  IGV  R+VV
Sbjct: 6   MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +    ++NP+I   S +  +++EG +S+P    +V+R A + + Y D +  
Sbjct: 66  LELDAKDGAR---TYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q   ++ L A C QHE+D L+G+ +I  LSRLKR+ + KK  K+ + 
Sbjct: 123 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKMSRG 170


>gi|257464084|ref|ZP_05628468.1| polypeptide deformylase [Fusobacterium sp. D12]
 gi|317061604|ref|ZP_07926089.1| polypeptide deformylase [Fusobacterium sp. D12]
 gi|313687280|gb|EFS24115.1| polypeptide deformylase [Fusobacterium sp. D12]
          Length = 173

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + D +LR+++  +E++N +I  ++ NM+E MY+ DG+GLAA Q+G+  R+ V 
Sbjct: 1   MIYEIKKYGDSVLRKIAEKVEEVNDEIREILRNMVETMYARDGVGLAAPQVGISLRMFVC 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+       N    INP I   +++    +EGCLSIP     V+R A + + Y +   + 
Sbjct: 61  DI-GTPEESNVKKIINPLITPLTEETISVEEGCLSIPGIYKKVERIAKLKLEYQNEQGEF 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL   LF+D +S + + MI KK+  L + 
Sbjct: 120 VEEILEGFPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQALKKE 166


>gi|311898295|dbj|BAJ30703.1| putative polypeptide deformylase [Kitasatospora setae KM-6054]
          Length = 218

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 3/165 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R  R +   + ++  LID+M + MY+ +G+GLAA QIGV  ++ V 
Sbjct: 42  TARPITVVGNPVLHREVRTVTAFDGELSALIDDMFQSMYAAEGVGLAANQIGVDLKVFVY 101

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +             QEGCLS+P    ++ R  +  V   D +
Sbjct: 102 DCPDDEGVRHVGHVVNPVLEELPAGRRALDDSQEGCLSVPTAYQELARPDYAAVTGQDKD 161

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                +   G  A CLQHE DHL G L+ID LS+  R    ++M+
Sbjct: 162 GNPIRVEGTGFFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMA 206


>gi|300858540|ref|YP_003783523.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685994|gb|ADK28916.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
          Length = 169

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DP+L   +  +   + ++ NL+ +MLE M +  G+GLAA Q+GV  R+ V
Sbjct: 1   MTIRDIRFFGDPVLTMRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D   H         INP      +D  +  EGCLSIPD + D  R   + V   D   +
Sbjct: 61  YDCS-HIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GL++ C+QHE DHL+G+LF+  L +  R      + +
Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHRKDAMATIRQ 163


>gi|254388984|ref|ZP_05004215.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|326443292|ref|ZP_08218026.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|197702702|gb|EDY48514.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
          Length = 217

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 41  TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +     +  V     EGCLS+P   A++ R  +  V   D +
Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 206


>gi|157962208|ref|YP_001502242.1| peptide deformylase [Shewanella pealeana ATCC 700345]
 gi|157847208|gb|ABV87707.1| peptide deformylase [Shewanella pealeana ATCC 700345]
          Length = 163

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 100/165 (60%), Gaps = 5/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R + P+  I   +   ID+++E MY TD GIGLAA Q+G L+ ++
Sbjct: 1   MAVLDILTIPDERLKRKAVPVTDI-ESVQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  PMV INP+I+    ++   +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSE--ERDQPMVLINPEIVESRGEYQ-GEEGCLSIPGYRAKVNRHEGVKVSALDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   I  D  LA  LQHE+DHLNG++F DHLS LK+ +  KK+ K
Sbjct: 117 KAFEIDTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKK 161


>gi|237747725|ref|ZP_04578205.1| peptide deformylase [Oxalobacter formigenes OXCC13]
 gi|229379087|gb|EEO29178.1| peptide deformylase [Oxalobacter formigenes OXCC13]
          Length = 178

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/159 (36%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   D  L R S P+++ N  ++  LI++M E MY+ DG GLAA QIG+  R+V
Sbjct: 1   MAVRKILKMGDSRLLRESEPVKQFNTPELNQLIEDMYETMYAADGAGLAAPQIGINQRVV 60

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +    ++    +       V INP I   SD+     EGCLSIP  R  V R A I    
Sbjct: 61  IFGYDENNRYPDAPPVPKTVLINPVIRPLSDEIDAGWEGCLSIPGMRGIVPRWAKIHYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            D         ADG  A  +QHE DHL+GIL+   +  L
Sbjct: 121 FDQFGNKISRNADGFHARVVQHECDHLDGILYPFRIDDL 159


>gi|163738220|ref|ZP_02145636.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
 gi|161388836|gb|EDQ13189.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
          Length = 169

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 1/152 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L   ++PI     ++  L  +MLE MY+  G GLAA Q+GVL RL V
Sbjct: 1   MAVLPIRAWPDPVLSTPAKPIATPG-NVETLARDMLETMYAAPGRGLAAPQVGVLIRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       ++P+V +NP I+  S + +   EGCLSI     +V R A++ + + D +  
Sbjct: 60  MDTTWKEGTRDPLVCVNPDIVALSVEMATMSEGCLSIKGVSLEVTRPAWVDLAWSDLHGV 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                 +G  A C+QHE DHL G +  D +S 
Sbjct: 120 RHQRRFEGFAAACVQHEYDHLEGRVTFDRVSP 151


>gi|163738221|ref|ZP_02145637.1| peptide deformylase [Phaeobacter gallaeciensis BS107]
 gi|161388837|gb|EDQ13190.1| peptide deformylase [Phaeobacter gallaeciensis BS107]
          Length = 165

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  +  + +I  + + L  +M++ M +  G+GLAA QIGVL RL V
Sbjct: 1   MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D    + R   +   NP+I+  S     ++E   ++P   A +KR   +TVRYMD    
Sbjct: 61  VD--GSSERGRAVRLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  KL
Sbjct: 119 TVERDFVGIEATSVQHQIDHLNGKMYFDKLSKVKRDMLIRKAKKL 163


>gi|258511303|ref|YP_003184737.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478029|gb|ACV58348.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 167

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR+ ++ + +    I  L+D+M E MY  DGIGLAA QIG+L RLVV
Sbjct: 1   MAIRIIRKGEDPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVV 60

Query: 61  IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ID+   +D   ++  +  +NP+I+  S      +E CLS+P     V+R+A++ VR  + 
Sbjct: 61  IDVQPKEDSFQKRAWIELVNPEILERSG-VQREREACLSLPGLSGVVERAAYVRVRAQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             +   I    LLA CLQHE+DHL+GILF D+L   +
Sbjct: 120 YGEFFEIEGRDLLARCLQHEIDHLDGILFTDYLRPEE 156


>gi|237736610|ref|ZP_04567091.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817]
 gi|229420472|gb|EEO35519.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817]
          Length = 169

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 4/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + + +LR V++ +E I+++I+ ++DNM+E M+   G+GLAA Q+G+  R+ V 
Sbjct: 1   MIYEIKKYGEAVLREVAQEVENIDNEILEILDNMVETMHEAKGVGLAAPQVGISKRMFVC 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D   RK     INP I   +D    ++EGCLS+P     V+R   I + Y++   + 
Sbjct: 61  DQGDGVVRK----VINPIITPMTDKLMDFEEGCLSVPGIYKKVQRPEKIKIDYLNEKGEK 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G LA  +QHE DHL+ +LF+D +S + + MI KK+  L + 
Sbjct: 117 VSEEVEGFLAIIMQHEFDHLDAVLFVDKISPMAKRMINKKLQMLKKE 163


>gi|291301355|ref|YP_003512633.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
 gi|290570575|gb|ADD43540.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
          Length = 173

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 2/162 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +V     +L R  R +   + ++  L+D+M   MY+ +G+GLAA QIGV  R+ VI
Sbjct: 8   TVHDIVYHGTEVLHRRCRTVTDFDDELARLVDDMFASMYAANGVGLAANQIGVDARVFVI 67

Query: 62  DLQDHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D +D    +     +NP +       + +V  EGCLS+P   ADV R+   TV   D   
Sbjct: 68  DCRDDDGGRLYGHIVNPTLREEPPPRELNVGPEGCLSVPGQYADVARTQTATVDGFDKTG 127

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           +   + + G  A CLQHE DHLNGI+++D L +  R  +  +
Sbjct: 128 KPITLTSTGEAARCLQHETDHLNGIVYVDKLPKKIRKRLLAE 169


>gi|328675276|gb|AEB27951.1| Peptide deformylase [Francisella cf. novicida 3523]
          Length = 172

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 94/170 (55%), Gaps = 5/170 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           V+   D+   +NP +               + +EGCLS P   A V R+  + ++ ++  
Sbjct: 61  VM--YDNLEEQNPEIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEF 118

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +   +  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 119 GEEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 168


>gi|46581767|ref|YP_012575.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601080|ref|YP_965480.1| peptide deformylase [Desulfovibrio vulgaris DP4]
 gi|46451190|gb|AAS97835.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561309|gb|ABM27053.1| peptide deformylase [Desulfovibrio vulgaris DP4]
 gi|311232326|gb|ADP85180.1| peptide deformylase [Desulfovibrio vulgaris RCH1]
          Length = 171

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 101/168 (60%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PD  L      I++I  DI  L  +M+E MY  DGIGLAA Q+G   RL+V+
Sbjct: 1   MIREVLKYPDERLAIECDDIDEITDDIRQLAADMVETMYREDGIGLAAPQVGANCRLIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R++ M FINP++    D+    +EGCLS+P  RA V+R   + +   D +   
Sbjct: 61  DVSGPEKRESLMTFINPRLEPLGDEKVESEEGCLSVPALRAKVERHERVRLTARDLDGNE 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA CLQHE+DHL G LFID +SRLKR +   K+ K ++ R
Sbjct: 121 VCMDADGLLAICLQHEIDHLGGTLFIDRISRLKRSLYDAKVKKWLKAR 168


>gi|146300287|ref|YP_001194878.1| peptide deformylase [Flavobacterium johnsoniae UW101]
 gi|189083071|sp|A5FGV5|DEF_FLAJO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146154705|gb|ABQ05559.1| peptide deformylase [Flavobacterium johnsoniae UW101]
          Length = 196

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+V   I     ++   I NM E MY+  G+GLAA Q+G+  R+ VI
Sbjct: 1   MILPIVGYGDPVLRKVGTAITPDYPNLKETIANMYETMYNAYGVGLAAPQVGLPIRIFVI 60

Query: 62  DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    +             +     FIN KI+    +   + EGCLSIPD R DV R   
Sbjct: 61  DTTPFSDDEDLPADEQKDLKGFKRTFINAKIVKEEGEEWSFNEGCLSIPDVREDVYRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+ Y + +   +    DGL+A  +QHE DH+ G+LF D +S LK+ +I KK+  + + +
Sbjct: 121 VTIEYCEEDFVMKTEVFDGLIARVIQHEYDHIEGVLFTDKISSLKKRLIQKKLKNITEGK 180


>gi|300868003|ref|ZP_07112642.1| peptide deformylase [Oscillatoria sp. PCC 6506]
 gi|300334024|emb|CBN57820.1| peptide deformylase [Oscillatoria sp. PCC 6506]
          Length = 186

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/146 (39%), Positives = 89/146 (60%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D  LR+ ++ +  ++++I  L+  ML+ MYS +GIGLAA Q+ V  +++V+D + 
Sbjct: 19  IHTLGDRALRQPAKRVASVDAEIRQLVREMLQTMYSAEGIGLAAPQVAVQKQVIVVDCEP 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+V INP I  +S +  V+QEGCLSIP    +VKR   I V Y D   + Q + 
Sbjct: 79  DNAANPPLVLINPSIKKYSGEVCVFQEGCLSIPGVYLEVKRPEAIEVFYRDEYGRPQTLK 138

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
           A  LL+  +QHE+DHLNG+LF+D + 
Sbjct: 139 ATELLSRAIQHEMDHLNGVLFVDRVE 164


>gi|78778455|ref|YP_396567.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
 gi|123727935|sp|Q31DB4|DEF_PROM9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78711954|gb|ABB49131.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
          Length = 201

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ S+ I K++  I  L   M++ MY+  GIGLAA QIG+   L+VID+ 
Sbjct: 32  EIYKLGDDVLRQNSKRITKVDESIRKLTREMIQSMYAAKGIGLAAPQIGINKELLVIDVN 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INP+I  +    + Y+EGCLSIP    +V R + I +++ D   + + +
Sbjct: 92  FEDSAAEPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHL---SRLKRDMITK 160
            ADGLLA C+QHE+DHLNGILF+D +     LK+++I +
Sbjct: 152 KADGLLARCIQHEMDHLNGILFVDRVTSKDDLKKELIKE 190


>gi|332709623|ref|ZP_08429583.1| peptide deformylase [Lyngbya majuscula 3L]
 gi|332351656|gb|EGJ31236.1| peptide deformylase [Lyngbya majuscula 3L]
          Length = 187

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/145 (40%), Positives = 91/145 (62%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+ ++ + K++ +I  L + ML+ MYS DGIGLAA Q+G+  +++V+D + 
Sbjct: 19  IHYLGDRVLRQPAKRVAKVDQNIRKLAEQMLQTMYSADGIGLAAPQVGINKQMIVVDCEP 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +     P+V INP+I +F       QEGCLSIP    DV R   I V Y D N + + + 
Sbjct: 79  NNQDNQPLVLINPEIKSFGSTPCDGQEGCLSIPGVYLDVTRPDEIEVAYKDQNGRPRTLK 138

Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150
           A+GLL+  +QHE+DHL G++F+D +
Sbjct: 139 ANGLLSRVIQHEIDHLKGVMFVDRV 163


>gi|317151959|ref|YP_004120007.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942210|gb|ADU61261.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2]
          Length = 165

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 1/164 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  +  +PD +L   + P+ +I  ++  LI++M+E MY  DG+GLAA Q+G   RL+ +
Sbjct: 1   MKLEICTWPDDVLAARAEPVAEITPEMKKLINDMVETMYEGDGVGLAAPQVGESIRLICV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      R +  V INP+I+    +    +EGCLS P++   V R   + V  MD +   
Sbjct: 61  DQTGPKLRADLRVLINPEIVECDGEVES-EEGCLSCPEFSGTVMRKERVKVTGMDPDGGP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             I  DG LA  LQHE+DHLNGI   D   RLK+ M  K+ +K 
Sbjct: 120 VCIDTDGFLAIVLQHEIDHLNGITIADRAGRLKKAMYRKRAAKW 163


>gi|261409931|ref|YP_003246172.1| peptide deformylase [Paenibacillus sp. Y412MC10]
 gi|261286394|gb|ACX68365.1| peptide deformylase [Paenibacillus sp. Y412MC10]
          Length = 172

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/151 (42%), Positives = 100/151 (66%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG  GLAA QIG+L RL+
Sbjct: 1   MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  +       +  INP+I+    +  +  E CLS P Y   VKR+  +TV+ ++   
Sbjct: 61  VMDCGE-----GLIELINPEIVEMDGE-QMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Q  I+  +  LA C+QHE+DHLNGILF+DH+
Sbjct: 115 QTVILKGEDYLARCMQHEIDHLNGILFVDHV 145


>gi|225377871|ref|ZP_03755092.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM
           16841]
 gi|225210309|gb|EEG92663.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM
           16841]
          Length = 166

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+L ++ +P++++      LI++ML+ MY  +G+GLAA Q+G+L R+VV
Sbjct: 10  MALRTIRVQGDPVLEKICKPVKELTPRTKELIEDMLDTMYEANGVGLAAPQVGILKRIVV 69

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V +NP I+  S +     EGCLSIP     V R  ++ V   D N +
Sbjct: 70  IDVGE-----GPVVMVNPVILETSGE-QTGDEGCLSIPGKAGQVTRPNYVKVHAFDENME 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I    L+A  + HE+DHL+G L+++ + 
Sbjct: 124 EYEIEGTELMARAMCHEIDHLDGHLYVEKVE 154


>gi|332799422|ref|YP_004460921.1| peptide deformylase [Tepidanaerobacter sp. Re1]
 gi|332697157|gb|AEE91614.1| Peptide deformylase [Tepidanaerobacter sp. Re1]
          Length = 154

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR +   +  +  LI +MLE M + +G+GLAA Q+G+L R+VV
Sbjct: 1   MALRNIREYGDEVLRKKSRNVTVFDKRLHTLILDMLETMMNANGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V +NP+I+    +  +  EGCLSIP    +V R + + V+  D   +
Sbjct: 61  IDVGE-----GPIVLVNPEIVESKGE-VIEPEGCLSIPGILGEVPRPSRVKVKAQDKWGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +  I  + LLA  L HE+DHL G LF+D   + 
Sbjct: 115 YIEIEGEDLLARALCHEIDHLEGKLFVDKAIKF 147


>gi|218130013|ref|ZP_03458817.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697]
 gi|317476772|ref|ZP_07936015.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987816|gb|EEC54142.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697]
 gi|316906947|gb|EFV28658.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 184

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+VV+
Sbjct: 1   MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL         ++     +IN  I+  S +    +EGCLS+P     VKR   I V+Y+D
Sbjct: 61  DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +        +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 EDLVEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNAMLKGK 173


>gi|320012174|gb|ADW07024.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331]
          Length = 169

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 66/144 (45%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +   P L      +      +  L+++M   MY+ +G+GLAA QIGV  R+ V D  D  
Sbjct: 3   LLGAPALHSPCDDVTDFGPSLARLVEDMFATMYAANGVGLAANQIGVPLRVFVYDCPDDD 62

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
             ++    +NP ++    D     EGCLS+P   A   R     V       +   I   
Sbjct: 63  EVRHLGHLVNPVLVEADGDTVRGPEGCLSLPGIEAGTPRFDRAVVEGRTVAGEPVRITGT 122

Query: 128 GLLATCLQHELDHLNGILFIDHLS 151
           G  A CLQHE DHL+G ++ D L+
Sbjct: 123 GWFARCLQHECDHLDGRVYTDRLT 146


>gi|254519243|ref|ZP_05131299.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
 gi|226912992|gb|EEH98193.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
          Length = 147

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D  LR+  + + +I    + LI++M + MY  DG+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNIRQNGDEALRKKCKVVTEITPRTLKLIEDMADTMYEADGVGLAAPQVGILQRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    +   VFINP+I+  S    + +EGCLS+P   ADV+R  ++ V+ ++   +
Sbjct: 61  IDIYDDYGLR---VFINPEILEVSGS-QLGEEGCLSVPGEVADVERPNYVKVKALNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             ++ A  LLA  + HE DHLNG LFID+L 
Sbjct: 117 EFVLEATELLARAILHENDHLNGTLFIDYLK 147


>gi|221640346|ref|YP_002526608.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|221161127|gb|ACM02107.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
          Length = 167

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  +   +   +   NP+I+  S  F  ++EG  ++P   A + R   +TVR+++   + 
Sbjct: 61  DCSESRGKA--IRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGET 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHL+G L+ID LS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|329924705|ref|ZP_08279720.1| peptide deformylase [Paenibacillus sp. HGF5]
 gi|328940539|gb|EGG36861.1| peptide deformylase [Paenibacillus sp. HGF5]
          Length = 172

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/151 (41%), Positives = 100/151 (66%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG  GLAA QIG+L RL+
Sbjct: 1   MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  +       +  INP+I+    +  +  E CLS P Y   VKR+  +TV+ ++   
Sbjct: 61  VMDCGE-----GLIELINPEIVEMDGE-QMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  I+  +  LA C+QHE+DHLNGILF+DH+
Sbjct: 115 ETVILKGEDYLARCMQHEIDHLNGILFVDHV 145


>gi|134299560|ref|YP_001113056.1| peptide deformylase [Desulfotomaculum reducens MI-1]
 gi|134052260|gb|ABO50231.1| peptide deformylase [Desulfotomaculum reducens MI-1]
          Length = 152

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   D ILR  ++P++++  +I  L+DNM + MY  +G+GLAA QIGV  R++V
Sbjct: 1   MAIYKIVEIGDEILREKAKPVKEVTPNIHKLLDNMADTMYEANGVGLAAPQIGVSKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +       +  INP+I+  S       EGCLS+P+   +V R+  + V+ ++   +
Sbjct: 61  VDIGE-----GLIELINPEIVEVSGHTVTDTEGCLSVPNMIGEVSRADKLVVKGLNRKGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +  A   LA   QHE+DHL GI+F+D  S L++
Sbjct: 116 EVLYRAKDFLARAFQHEIDHLEGIIFVDKASNLRK 150


>gi|57238784|ref|YP_179920.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden]
 gi|58578709|ref|YP_196921.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden]
 gi|58616771|ref|YP_195970.1| peptide deformylase [Ehrlichia ruminantium str. Gardel]
 gi|57160863|emb|CAH57765.1| putative peptide deformylase 1 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416383|emb|CAI27496.1| Peptide deformylase [Ehrlichia ruminantium str. Gardel]
 gi|58417335|emb|CAI26539.1| Peptide deformylase [Ehrlichia ruminantium str. Welgevonden]
          Length = 181

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 12/176 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LV  PD  L   S  + ++  +I  L+D+M EVM++ +GIGLAAVQ+G+  R+ V
Sbjct: 1   MSTLSLVTIPDHRLSLCSEEVTEVTQEIKKLVDDMFEVMHTNNGIGLAAVQVGIHKRIFV 60

Query: 61  IDLQ------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            D+              +     P   INPKI+  S +    QEGCLS+PD    V R  
Sbjct: 61  ADVPVDYKDHETIKTDGYKSHGGPYCMINPKIVDMSQEKVKMQEGCLSVPDCLEYVMRPK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ++T++Y+D N    II A G LA CL+HELDHLNGI+F+ +LS+ KRD+I +K+ K
Sbjct: 121 YVTMQYLDYNGNKCIIKAQGWLARCLEHELDHLNGIVFLKYLSKFKRDLIVEKIRK 176


>gi|15605076|ref|NP_219861.1| peptide deformylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789079|ref|YP_328165.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
 gi|166154565|ref|YP_001654683.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
 gi|166155440|ref|YP_001653695.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|237802778|ref|YP_002887972.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804700|ref|YP_002888854.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311158|ref|ZP_05353728.1| peptide deformylase [Chlamydia trachomatis 6276]
 gi|255317459|ref|ZP_05358705.1| peptide deformylase [Chlamydia trachomatis 6276s]
 gi|255506935|ref|ZP_05382574.1| peptide deformylase [Chlamydia trachomatis D(s)2923]
 gi|301335828|ref|ZP_07224072.1| peptide deformylase [Chlamydia trachomatis L2tet1]
 gi|6831532|sp|O84357|DEF_CHLTR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123606946|sp|Q3KM05|DEF_CHLTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687417|sp|B0B7S2|DEF_CHLT2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687475|sp|B0BBY7|DEF_CHLTB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|3328774|gb|AAC67948.1| Polypeptide Deformylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167609|gb|AAX50617.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
 gi|83033878|gb|ABB97392.1| polypeptide deformylase [Chlamydia trachomatis]
 gi|83033880|gb|ABB97393.1| polypeptide deformylase [Chlamydia trachomatis]
 gi|165930553|emb|CAP04048.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
 gi|165931428|emb|CAP07002.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|231273000|emb|CAX09912.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274012|emb|CAX10805.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
 gi|296435872|gb|ADH18046.1| peptide deformylase [Chlamydia trachomatis G/9768]
 gi|296436798|gb|ADH18968.1| peptide deformylase [Chlamydia trachomatis G/11222]
 gi|296437732|gb|ADH19893.1| peptide deformylase [Chlamydia trachomatis G/11074]
 gi|297140231|gb|ADH96989.1| peptide deformylase [Chlamydia trachomatis G/9301]
          Length = 181

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+V+ P+ +I  ++  L+ +M E M    G+GLAA Q+G    L ++
Sbjct: 1   MIRDLEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 60

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P VFINP I   S+      EGCLSIP  R +V R   ITV   
Sbjct: 61  GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167
           + + Q   +  +G LA  + HE DHL+G+L+ID +S + K       + K+ +
Sbjct: 121 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173


>gi|118496725|ref|YP_897775.1| peptide deformylase [Francisella tularensis subsp. novicida U112]
 gi|194324032|ref|ZP_03057807.1| peptide deformylase [Francisella tularensis subsp. novicida FTE]
 gi|208780004|ref|ZP_03247347.1| peptide deformylase [Francisella novicida FTG]
 gi|118422631|gb|ABK89021.1| peptide deformylase [Francisella novicida U112]
 gi|194321929|gb|EDX19412.1| peptide deformylase [Francisella tularensis subsp. novicida FTE]
 gi|208744008|gb|EDZ90309.1| peptide deformylase [Francisella novicida FTG]
          Length = 174

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 5/170 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++   D+   +NP +               + +EGCLS P   A V R+  + ++ ++  
Sbjct: 63  IM--YDNLEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 121 GDEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170


>gi|94987209|ref|YP_595142.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731458|emb|CAJ54821.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 171

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/165 (43%), Positives = 105/165 (63%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++ +PD  L+++S  ++ I  DI NL   M++ MY  +GIGLAA Q+G L RL+V
Sbjct: 1   MSLK-ILQYPDISLQKISLEVQDITQDIHNLAKQMVQTMYDANGIGLAAPQVGYLLRLIV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D+     + + +V INPKI    D  F   +EGCLS+PDYR+ VKR A + +  +D ++
Sbjct: 60  VDVSGPEQKSSLLVLINPKITPVIDSGFIEGEEGCLSVPDYRSKVKRHAKVLLDAIDLDS 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                 A+GLL+ CLQHE+DHL+G LFID +S LKR +   ++ K
Sbjct: 120 NPVSFEAEGLLSVCLQHEIDHLDGKLFIDRVSYLKRKLYDGRLKK 164


>gi|110799951|ref|YP_696430.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|168210623|ref|ZP_02636248.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|168214221|ref|ZP_02639846.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|168217031|ref|ZP_02642656.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
 gi|169342685|ref|ZP_02863726.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|110674598|gb|ABG83585.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|169299191|gb|EDS81261.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|170711284|gb|EDT23466.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|170714299|gb|EDT26481.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|182380902|gb|EDT78381.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
          Length = 147

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    D ILR+  R ++ IN  I  L+++M+E MY  +G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLAAPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D A  +   VFINP+I+  S +    +EGCLS+P     VKR+  I ++ +D N  
Sbjct: 61  VDAMDGAGSR---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
             ++ A+  LA  +QHE DHL G+LFIDH
Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145


>gi|303233917|ref|ZP_07320566.1| peptide deformylase [Finegoldia magna BVS033A4]
 gi|302494842|gb|EFL54599.1| peptide deformylase [Finegoldia magna BVS033A4]
          Length = 162

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/160 (41%), Positives = 95/160 (59%), Gaps = 3/160 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+ SR +EKI++ I  + ++M E MY   GIGLA VQ+G+L R+VV
Sbjct: 1   MALRQIRLENDPILRKKSREVEKIDNRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD   +   MV INPKII  S+D  +  EGCLS+P     V+R   + V Y D N  
Sbjct: 61  IDMQDEDGK---MVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            Q +      A C  HELDHL+G+L+ D +  L  + + +
Sbjct: 118 TQRVTGTDYKAHCFCHELDHLDGVLYTDKVLNLSEEEVER 157


>gi|297748483|gb|ADI51029.1| Peptide deformylase [Chlamydia trachomatis D-EC]
 gi|297749363|gb|ADI52041.1| Peptide deformylase [Chlamydia trachomatis D-LC]
          Length = 191

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+V+ P+ +I  ++  L+ +M E M    G+GLAA Q+G    L ++
Sbjct: 11  MIRDLEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 70

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P VFINP I   S+      EGCLSIP  R +V R   ITV   
Sbjct: 71  GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 130

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167
           + + Q   +  +G LA  + HE DHL+G+L+ID +S + K       + K+ +
Sbjct: 131 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 183


>gi|157834784|pdb|2DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr,
           20 Structures
          Length = 147

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/150 (42%), Positives = 104/150 (69%), Gaps = 3/150 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VI
Sbjct: 1   AVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + + 
Sbjct: 61  DVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             + ADGLLA C+QHE+DHL G LF+D+LS
Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLS 147


>gi|284054434|ref|ZP_06384644.1| peptide deformylase [Arthrospira platensis str. Paraca]
 gi|291565688|dbj|BAI87960.1| peptide deformylase [Arthrospira platensis NIES-39]
          Length = 187

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/147 (40%), Positives = 88/147 (59%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ ++ + +I+ +I  L+  ML+ MYS DGIGLAA Q+GV  +++VID +
Sbjct: 18  DIHYLGDRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIVIDCE 77

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP I   S + S +QEGCLSIP    DV R   + V + D N + + I
Sbjct: 78  PDNAATPPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGRPRTI 137

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
            A  LL   +QHE+DHL G+LF+D + 
Sbjct: 138 LATELLCRAIQHEIDHLQGVLFVDRVD 164


>gi|18310726|ref|NP_562660.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110802372|ref|YP_699030.1| peptide deformylase [Clostridium perfringens SM101]
 gi|23396559|sp|Q8XJL2|DEF1_CLOPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|18145407|dbj|BAB81450.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110682873|gb|ABG86243.1| peptide deformylase [Clostridium perfringens SM101]
          Length = 147

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    D ILR+  R ++ IN  I  L+++M+E MY  +G+GLA+ Q+G+L R+ V
Sbjct: 1   MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLASPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D A  +   VFINP+I+  S +    +EGCLS+P     VKR+  I ++ +D N  
Sbjct: 61  VDAMDGAGSR---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
             ++ A+G LA  +QHE DHL G+LFIDH
Sbjct: 117 EFVLDAEGFLARAIQHEYDHLEGVLFIDH 145


>gi|330466981|ref|YP_004404724.1| peptide deformylase [Verrucosispora maris AB-18-032]
 gi|328809952|gb|AEB44124.1| peptide deformylase [Verrucosispora maris AB-18-032]
          Length = 186

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  LI ++ + M  + G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLIADLTDTMRDSAGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLSIP    D KR   +  +  +    
Sbjct: 61  FDVDDVVG-----HLVNPVLEFPDAEEQDGPEGCLSIPGMYFDTKRRQNVIAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I   GL+A C+QHE DHL+G+LFID L    R    K + +     D
Sbjct: 116 PLQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKAIRQAEWYDD 165


>gi|182440102|ref|YP_001827821.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780771|ref|ZP_08240036.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1]
 gi|178468618|dbj|BAG23138.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326661104|gb|EGE45950.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1]
          Length = 181

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 71/151 (47%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+L R    +      +  L+++M   MY+  G+GLAA QIGV  ++ V D
Sbjct: 13  VREMSLLGDPLLHRPCEDVTDFGPPLAKLVEDMFATMYAAQGVGLAANQIGVPLKVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A   R     V  +    +  
Sbjct: 73  CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTDRFDHAVVEGLTMTGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            I   G  A CLQHE DHL G ++ D L+ L
Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYTDRLTGL 163


>gi|152981416|ref|YP_001353370.1| formylmethionine deformylase [Janthinobacterium sp. Marseille]
 gi|151281493|gb|ABR89903.1| formylmethionine deformylase [Janthinobacterium sp. Marseille]
          Length = 173

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  V+ P+++I  DI  L+ +M + MY+ DGIGLAA Q+ V  +++V
Sbjct: 1   MTRLSVLQYPDPRLYTVAEPVQQITQDIRRLVADMTQTMYALDGIGLAATQVDVHLQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R    V INP I+      + Y+EGCLS+PD    V+R+A+I VR +D + +
Sbjct: 61  IDVSEKQNRLQ--VLINPTIVKM-GGKAEYEEGCLSVPDVFESVRRAAWIHVRALDLDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + A+GL A C+QHE+DHL G++F++HLS   +  I   +SK  +
Sbjct: 118 TIDVQAEGLKAMCIQHEMDHLQGMVFVEHLSPTNQRRILNSLSKQSR 164


>gi|167630201|ref|YP_001680700.1| peptide deformylase [Heliobacterium modesticaldum Ice1]
 gi|238687984|sp|B0TGS8|DEF_HELMI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167592941|gb|ABZ84689.1| peptide deformylase [Heliobacterium modesticaldum Ice1]
          Length = 151

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 85/151 (56%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++   DP+LR  ++P+ + NS++  LID+M + M +  G+GLAA QIG+  R+ V
Sbjct: 1   MAVYEILKMGDPVLREKAKPVTRFNSNLGRLIDDMFDTMAAARGVGLAAPQIGIGKRVCV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++      K     +NP+II    +     EGCLSIPDY   VKR   + V+  D   +
Sbjct: 61  VEVG-----KRRFELVNPEIIEAEGE-QCDAEGCLSIPDYTGRVKRFQRVRVKAQDRKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I     LLA   QHE+DHL+GILF+D + 
Sbjct: 115 TFIAEGTDLLAVAFQHEIDHLDGILFVDRVE 145


>gi|161511100|ref|NP_770645.2| peptide deformylase [Bradyrhizobium japonicum USDA 110]
          Length = 165

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV +PD  L   +RP+   + ++  L  ++L+ M +  GIG+ A  IGV  R+VV
Sbjct: 1   MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +    ++NP+I   S +  +++EG +S+P    +V+R A + + Y D +  
Sbjct: 61  LELDAKDGAR---TYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q   ++ L A C QHE+D L+G+ +I  LSRLKR+ + KK  K+ + 
Sbjct: 118 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKMSRG 165


>gi|325270161|ref|ZP_08136768.1| peptide deformylase [Prevotella multiformis DSM 16608]
 gi|324987462|gb|EGC19438.1| peptide deformylase [Prevotella multiformis DSM 16608]
          Length = 186

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 95/174 (54%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VVI
Sbjct: 1   MVLPIYTYGQPVLRKVAEDIPLDYPDLPELIQNMFETNTASDGVGLAAPQIGKSVRVVVI 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL         ++     FIN  I+   D +    +EGCLS+P     V R+  I V+Y+
Sbjct: 61  DLDVLSDTFPEYKDFRHAFINGHILELDDSETETMEEGCLSLPGIHESVTRAKRIHVKYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D + +    + DG LA  +QHE DHL G +F D LS  +R MI+ K+  L+Q +
Sbjct: 121 DEHLKEHDEWVDGYLARVIQHEFDHLEGRVFTDRLSAFRRQMISGKLKALLQGK 174


>gi|260424655|ref|ZP_05732837.2| peptide deformylase [Dialister invisus DSM 15470]
 gi|260402717|gb|EEW96264.1| peptide deformylase [Dialister invisus DSM 15470]
          Length = 161

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 4/150 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++   DPIL+ V+ P+   +  +  L++ M + MY ++G+GLAA QI V  R+ V D  +
Sbjct: 11  IITAGDPILKSVAMPVTAFDKKLKFLVNEMKKTMYESNGVGLAAPQIAVSKRVFVADDGE 70

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                    +INP+     D+     EGCLS+P++  +V+R A +TV+Y D + + +   
Sbjct: 71  SGFE----AYINPRWTPDGDEKVTDTEGCLSVPNWYGEVERYANVTVKYQDIHGKRKQKK 126

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           A GLLA C+QHE DHLNGILFI+  + L +
Sbjct: 127 ATGLLARCIQHETDHLNGILFIEKANSLHK 156


>gi|163743814|ref|ZP_02151187.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161382963|gb|EDQ07359.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
          Length = 169

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 1/152 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L   ++PI     D+  L  +ML+ MY+  G GLAA Q+GVL RL V
Sbjct: 1   MAVLPIRAWPDPVLSTPAKPIATP-RDVETLARDMLDTMYAAPGRGLAAPQVGVLIRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       ++P+V +NP I+  S + +   EGCLSI     +V R A++ + + D    
Sbjct: 60  MDTTWKEGTRDPLVCVNPDIVALSAETATMSEGCLSIKGVSLEVTRPAWVDLAWSDLQGV 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                 +G  A C+QHE DHL G +  D +S 
Sbjct: 120 RHQRRFEGFAAACVQHEYDHLEGRVTFDRVSP 151


>gi|154244580|ref|YP_001415538.1| peptide deformylase [Xanthobacter autotrophicus Py2]
 gi|154158665|gb|ABS65881.1| peptide deformylase [Xanthobacter autotrophicus Py2]
          Length = 168

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPD  LR V+ P+   +  + NL+ ++L+ + +  GIG+ A  IG+  R+VV
Sbjct: 1   MTARQIITFPDARLRSVAAPVTVFDDALANLVADLLDTLRAAPGIGITAPHIGIGKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +    +INP+I+  S +   + EG +S+P    +V+R A + VRY D +  
Sbjct: 61  LELSAEDGVR---AYINPQIVWASAELIRHAEGSVSMPGVTEEVERPARVHVRYQDLSGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +  ADGL A C QHE+D L+G+ +I  LSRLKR+ + K+  K
Sbjct: 118 EHLEEADGLRAVCHQHEIDQLDGVFWIQRLSRLKRERVIKRYEK 161


>gi|306845817|ref|ZP_07478385.1| peptide deformylase [Brucella sp. BO1]
 gi|306273709|gb|EFM55547.1| peptide deformylase [Brucella sp. BO1]
          Length = 164

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   + D+  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEDLRQLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRTAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|312880068|ref|ZP_07739868.1| peptide deformylase [Aminomonas paucivorans DSM 12260]
 gi|310783359|gb|EFQ23757.1| peptide deformylase [Aminomonas paucivorans DSM 12260]
          Length = 181

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 7/171 (4%)

Query: 1   MVKK-PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M K   + +FPDP+LR  +  +        + ++++   MY  DG+GLAA Q+G+  ++ 
Sbjct: 15  MAKLLDICVFPDPVLRVPTEKVADFGPSFQSFLEDLWNTMYLRDGVGLAAPQVGISRKVT 74

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D Q         V  NP+I+    +    +EGCLS P     V R   I +RY +   
Sbjct: 75  VVDAQGQ-----KFVLANPEILEREGETVA-EEGCLSFPGIFVPVLRPTRIRLRYQNERG 128

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +         LA    HE+DHLNG L IDH+S L+R  I +K+ K     D
Sbjct: 129 EPVEREVVDFLARVFSHEIDHLNGRLLIDHVSPLRRQFIQRKLRKAASEAD 179


>gi|218290476|ref|ZP_03494596.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239497|gb|EED06692.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1]
          Length = 167

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR+ ++ + +    I  L+D+M E MY  DGIGLAA QIG+L RLVV
Sbjct: 1   MAIRIIRKGEDPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVV 60

Query: 61  IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ID+   +D   ++  +  +NP+I+  S      +E CLS+P     V+R+A++ VR  + 
Sbjct: 61  IDVQPKEDSFQKRAWIELVNPEIVARSG-VQREREACLSLPGLSGVVERAAYVRVRAQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             +   I    LLA CLQHE+DHL+GILF D+L   +
Sbjct: 120 YGEFFEIEGRDLLARCLQHEIDHLDGILFTDYLRPEE 156


>gi|188589463|ref|YP_001920560.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43]
 gi|251778927|ref|ZP_04821847.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|238689669|sp|B2V4B1|DEF_CLOBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188499744|gb|ACD52880.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43]
 gi|243083242|gb|EES49132.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 147

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+  R +EKI+  ++ LI +MLE MY  DG+GLAA Q+G+L RL +
Sbjct: 1   MALRNIRKYGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D      P+VFINP+I+   D   V +EGCLS+P     V R  ++  R ++   +
Sbjct: 61  VDIGD-----GPLVFINPEILDT-DGKQVDEEGCLSLPGKTEPVMRPNYVKARALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A+ LLA  + HE DHLNG LFID  ++
Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRTTK 146


>gi|282896056|ref|ZP_06304082.1| Polypeptide deformylase [Raphidiopsis brookii D9]
 gi|281198974|gb|EFA73849.1| Polypeptide deformylase [Raphidiopsis brookii D9]
          Length = 218

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 89/143 (62%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I KI+ ++  LI +ML+ MYS DGIGLAA Q+GV  +LVVID      
Sbjct: 50  LGDRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKP 109

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+V INP I   S +  V QEGCLSIP    +VKR   + + Y D   + Q + AD 
Sbjct: 110 EIPPLVLINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADN 169

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA C+ HE+DHLNG++F+D + 
Sbjct: 170 LLARCILHEMDHLNGVVFVDRVE 192


>gi|320008651|gb|ADW03501.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331]
          Length = 212

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +    + +   ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECSDVTEFGDELAQLIDDMFASQRTAEGVGLAANQIGVDRKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++     NP +   + +        EGCLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGVRHVGAICNPVLEELAPERRNLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    K+M++
Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMAE 201


>gi|207091735|ref|ZP_03239522.1| peptide deformylase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 175

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELSK 169


>gi|317011008|gb|ADU84755.1| peptide deformylase [Helicobacter pylori SouthAfrica7]
          Length = 174

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +  +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDEKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L    D  H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDDLQHKEDCLEIINPKWIETKGSL-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKILEASALLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|302542647|ref|ZP_07294989.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302460265|gb|EFL23358.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 218

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + + ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 42  TARPITVVGNPVLHKECQDVTEFDDELAALIDDMFASQRAAEGVGLAANQIGVDRKVFVY 101

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +     D  V     EGCLS+P    ++ R  +  VR  D  
Sbjct: 102 DCLDDEGVRHVGVVCNPVLEELPADRRVLDDSNEGCLSVPTAYCELARPDYAVVRGQDAE 161

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R  + ++M++
Sbjct: 162 GNPITVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDVLRQMAE 207


>gi|218510166|ref|ZP_03508044.1| peptide deformylase [Rhizobium etli Brasil 5]
          Length = 133

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/131 (59%), Positives = 102/131 (77%)

Query: 39  MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98
           MY   GIGLAA+QIGV  R++VID+      K P VFINP+I+  SD+ SVY+EGCLSIP
Sbjct: 1   MYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIP 60

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           DY A+V+R A ++V+Y+D N + Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+
Sbjct: 61  DYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMV 120

Query: 159 TKKMSKLVQLR 169
            KK +K  + +
Sbjct: 121 IKKFTKAAKSK 131


>gi|329954514|ref|ZP_08295605.1| peptide deformylase [Bacteroides clarus YIT 12056]
 gi|328527482|gb|EGF54479.1| peptide deformylase [Bacteroides clarus YIT 12056]
          Length = 184

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+VV+
Sbjct: 1   MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL         ++     +IN  I+  S +    +EGCLS+P     VKR   I V+Y+D
Sbjct: 61  DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 EDLVEHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNAMLKGK 173


>gi|332666752|ref|YP_004449540.1| peptide deformylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335566|gb|AEE52667.1| Peptide deformylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 183

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+ +  I     D+  LI +M E MY  +G+GLAA QIG   RL +I
Sbjct: 1   MLLPIYAYGHPVLRKKAEDITPDYEDLSKLIADMWETMYHAEGVGLAAPQIGRPIRLFII 60

Query: 62  DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D      +         VFIN + +        Y+EGCLSIPD R DV R   +T+RY+D
Sbjct: 61  DSIQLEEKGKDVIGLKTVFINAEKVEEKGKIWAYEEGCLSIPDIRGDVDRLDTLTLRYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N    I   DG+ A  +QHE DH+ GILF+++L  +K+ MI  ++  + + +
Sbjct: 121 ENFVEHITTFDGINARVIQHEYDHIEGILFLEYLKPVKKAMIRGRLENIRKGK 173


>gi|168207271|ref|ZP_02633276.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|170661355|gb|EDT14038.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
          Length = 147

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    D ILR+  R ++ IN  I  L+++M+E MY  +G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNLRFNDDEILRKKCRVVDDINDRIKILVEDMIETMYENNGVGLAAPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D A  +   VFINP+I+  S +    +EGCLS+P     VKR+  I ++ +D N  
Sbjct: 61  VDAMDGAGSR---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
             ++ A+  LA  +QHE DHL G+LFIDH
Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145


>gi|4098215|gb|AAD09580.1| N-formylmethionylaminoacyl-tRNA deformylase [Helicobacter pylori]
          Length = 174

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIET-GGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|209965357|ref|YP_002298272.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
 gi|209958823|gb|ACI99459.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
          Length = 186

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+LRR ++P+E  I + +     +M+E M    GIGLAA Q+ V +R+V
Sbjct: 1   MAILKIARMGHPVLRRPAQPVETPIPAVVRQFALDMIETMVDAPGIGLAAPQVHVGWRIV 60

Query: 60  VIDLQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           V  +               P V +NP     S++     EGCLSIP  R  V R A I  
Sbjct: 61  VFRVPGDRATGGAGDLPMEPQVLVNPAYEPLSEEMVEGWEGCLSIPGLRGVVPRFARIRY 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           R +  +       A G  A  +QHE+DHL+GIL+ID +  L R   T++M 
Sbjct: 121 RGLSLDGTAVEREASGTHARVVQHEIDHLDGILYIDRMPDLTRLTFTEEMR 171


>gi|149200572|ref|ZP_01877580.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
 gi|149136344|gb|EDM24789.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
          Length = 197

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
            F +P+LR+V+ PI +IN +I  L++ M++ MY  +GIGLAA Q+G   R+ VID     
Sbjct: 12  KFGNPVLRKVAEPISEINDEIRELVEEMVDTMYEENGIGLAAPQVGRSLRVFVIDTHFED 71

Query: 68  H-----------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                        K P+  INP+II+ S +   ++EGCLSIP   A V R + I ++   
Sbjct: 72  ETYGSDGEKLLCPKMPLALINPEIISTSGEDISFEEGCLSIPQINAAVVRPSNIVLKAQT 131

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              +       GL + C+QHE+DHL+G+LF D   +    ++ KK+ +L
Sbjct: 132 LEGEIIEADFGGLTSRCMQHEIDHLDGVLFTDKAEKDDLKLVAKKLEQL 180


>gi|269956930|ref|YP_003326719.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305611|gb|ACZ31161.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
          Length = 164

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I  I+  + +L+ ++LE + +    GLAA QIGV  R   
Sbjct: 4   MAMREIRVIPDPVLRTPCDEITTIDDRVRSLVADLLETVDAEGRAGLAANQIGVNLRAFS 63

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D          +NP+I+   D+     EGCLS+P       R+A+  V  +D +  
Sbjct: 64  WNIDDEVGY-----VLNPRIVALGDELQDGDEGCLSVPGLWYPTTRAAYARVEGIDLDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   GL+A CLQHE DHL+G L++D L R  R    +++ +
Sbjct: 119 PVVVEGAGLMARCLQHECDHLDGKLYLDRLERSVRVRAMRELRE 162


>gi|99082418|ref|YP_614572.1| formylmethionine deformylase [Ruegeria sp. TM1040]
 gi|99038698|gb|ABF65310.1| formylmethionine deformylase [Ruegeria sp. TM1040]
          Length = 165

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 97/167 (58%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +I  +  +M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTTRTCLPWPDKRLRTKAAEVTEITDEIRAIWVDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D    + R   +   NP+I+  S +   ++E   ++P   A +KR   +TVR+++ +  
Sbjct: 61  VD--GSSERGRAVRLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFLNEDGV 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  G+ AT +QH++DHLNG ++ DHLS++KRDM+ KK  KL +
Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGKMYFDHLSKVKRDMLVKKARKLAR 165


>gi|318060209|ref|ZP_07978932.1| peptide deformylase [Streptomyces sp. SA3_actG]
 gi|318079746|ref|ZP_07987078.1| peptide deformylase [Streptomyces sp. SA3_actF]
          Length = 210

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  +P+L +    + +   ++  L+D+M     + +G+GLAA Q+GV  ++ V D Q
Sbjct: 37  PITVVGNPVLHKECADVTEFGPELAKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDCQ 96

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D    ++  V  NPK+     +        EGCLS+P   A   R+ +  V   D +   
Sbjct: 97  DDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGNA 156

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +   G  A CLQHE DHL G L++D LS+  R    K+M++
Sbjct: 157 IKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199


>gi|85375926|gb|ABC70185.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       HR++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHREDCLEIINPKWIET-GGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|145220094|ref|YP_001130803.1| peptide deformylase [Prosthecochloris vibrioformis DSM 265]
 gi|189083076|sp|A4SFP2|DEF_PROVI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145206258|gb|ABP37301.1| peptide deformylase [Chlorobium phaeovibrioides DSM 265]
          Length = 190

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 102/169 (60%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + D +L + ++P++ ++  +  LID+M E M +  GIGLAA Q+G   RL+V+
Sbjct: 1   MILPITTYTDEVLHQTAKPLKGVDGAVEELIDSMFESMENASGIGLAAPQVGHSLRLLVL 60

Query: 62  DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D+      ++  PMV INP I++     ++ +EGCLS+P  + DV+R + IT++Y D N 
Sbjct: 61  DISCMKSYEDVAPMVVINPHILSVKG-KNLMEEGCLSVPGVQGDVQRPSSITLKYRDRNF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             Q     G+LA  LQHE+DHL+G LFID + +  R  I K++  + + 
Sbjct: 120 LEQTEEFSGMLARVLQHEIDHLSGTLFIDRMEKRDRRKIQKELDDIAKG 168


>gi|297379991|gb|ADI34878.1| peptide deformylase [Helicobacter pylori v225d]
          Length = 175

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 105/170 (61%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+ +
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMFI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFFEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEMDHLNGVLFVDKLSILKRKKFEKELKELNK 169


>gi|294814920|ref|ZP_06773563.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC
           27064]
 gi|294327519|gb|EFG09162.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC
           27064]
          Length = 217

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 41  TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +     +  V     EGCLS+P   A++ R  +  V   D +
Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
                +   G  A CLQHE DHL G L+ID LS+  R    ++M
Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQM 204


>gi|254510887|ref|ZP_05122954.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
 gi|221534598|gb|EEE37586.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
          Length = 164

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  DI  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MSVRTCLPWPDKRLRTKAGDVTEITDDIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S +   ++E   ++P   A VKR   +TV++++   Q
Sbjct: 61  VD--GSTERGKAVRLANPEILHSSVELREHEEASPNLPGVSAKVKRPRAVTVKFLNEQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                  G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  K
Sbjct: 119 IDHRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKK 162


>gi|85700133|gb|ABC74516.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIET-GGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSVLKRKKFEKELKELQK 169


>gi|227484652|ref|ZP_03914968.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237372|gb|EEI87387.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172]
          Length = 161

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/149 (44%), Positives = 95/149 (63%), Gaps = 3/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DPILR++SRP+E +   I  L+D+M E MY+ DG+GLAA Q+G L R++V
Sbjct: 1   MAIRNIRIDGDPILRKISRPVEDVTDRIRILLDDMAETMYAADGVGLAAPQVGNLRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D +D     + +  +NP+I+    +  +  EGCLSIPD+ A VKR   + V+Y+D N +
Sbjct: 61  VDPRD--GEDSLVKLVNPEILEMDGE-QIGVEGCLSIPDFNATVKRPEHVKVKYLDENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
            +I  A G  A  L HE+DHLNGILF D 
Sbjct: 118 EKIWDAHGFPAVILCHEIDHLNGILFKDK 146


>gi|119963025|ref|YP_947573.1| peptide deformylase [Arthrobacter aurescens TC1]
 gi|119949884|gb|ABM08795.1| peptide deformylase [Arthrobacter aurescens TC1]
          Length = 190

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 7/164 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+     ++  L+ +M E M   +G GLAA Q+GV  R+  
Sbjct: 1   MAILSIRIIGDPVLRTVADPVTDFGPELAKLVADMTETMEDVEGAGLAAPQVGVSQRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNA 119
             +            INP +   S+D+   + EGCLSIP     V+R        +D N 
Sbjct: 61  YRIGGVEG-----HIINPVL-ENSEDYQPDEVEGCLSIPGLGFPVRRYRATRATGVDLNG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
               + A+G+LA C QHE DHL+G+L+ D L    R    + + 
Sbjct: 115 NPVSVEAEGMLARCFQHETDHLDGVLYTDRLEGDDRKAALRAIR 158


>gi|325849091|ref|ZP_08170583.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480336|gb|EGC83399.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 153

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/148 (43%), Positives = 99/148 (66%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR+ S+ ++++N  I  L+D+M E MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++D       +  +NP+II    +  V  EGCLS+P++ A+VKR A + V+Y+D N +
Sbjct: 61  VDIRDEDG---LIKLVNPEIIEKDGE-QVGVEGCLSVPNFNANVKRPAHVIVKYLDENGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + I A+GL A  L HE+DHLNG+LFID
Sbjct: 117 EKKIEAEGLKAVALCHEIDHLNGVLFID 144


>gi|294673344|ref|YP_003573960.1| peptide deformylase [Prevotella ruminicola 23]
 gi|294473242|gb|ADE82631.1| peptide deformylase [Prevotella ruminicola 23]
          Length = 186

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ IF  P+LR+V+  I      + +LI +M E +  ++GIGLAA QIG   RLVVI
Sbjct: 1   MILPIYIFGQPVLRKVAEDITPDYPQLKDLIGDMWETLAESEGIGLAAPQIGKPIRLVVI 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL         ++    VFIN  I+ + +    V +EGCLSIP     V R   I V + 
Sbjct: 61  DLDVLSDDLPEYKGFKQVFINAHIVEYDESNTDVSEEGCLSIPAIHEKVTRPTRIHVEWD 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N +H   + +G LA  +QHE DHL+G +F+D +S L++ +I  K+  L Q R
Sbjct: 121 DENFEHHDEWVEGYLARVMQHEFDHLDGKMFVDRISPLRKQLIKSKLRALTQGR 174


>gi|217034160|ref|ZP_03439580.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10]
 gi|216943444|gb|EEC22900.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10]
 gi|317182103|dbj|BAJ59887.1| peptide deformylase [Helicobacter pylori F57]
          Length = 175

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169


>gi|85700129|gb|ABC74514.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIET-GGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|89255517|ref|YP_512878.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115314036|ref|YP_762759.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|187930952|ref|YP_001890936.1| peptide deformylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224457894|ref|ZP_03666367.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254366945|ref|ZP_04982982.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
 gi|290954254|ref|ZP_06558875.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143348|emb|CAJ78515.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115128935|gb|ABI82122.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134252772|gb|EBA51866.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
 gi|187711861|gb|ACD30158.1| peptide deformylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|282159936|gb|ADA79327.1| peptide deformylase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 172

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 5/170 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++   D+   +NP +               + +EGCLS P   A V R+  + ++ ++  
Sbjct: 61  IM--YDNLEEQNPEIITIINPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEF 118

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +   +  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 119 GEEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 168


>gi|222086074|ref|YP_002544606.1| peptide deformylase [Agrobacterium radiobacter K84]
 gi|221723522|gb|ACM26678.1| peptide deformylase [Agrobacterium radiobacter K84]
          Length = 164

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPDP+L+    P+   +  + +L  ++++ M +  G+G+ A  IGVL R+ V
Sbjct: 1   MSVRSIIRFPDPLLKTTCAPVTIFDDGLHSLAIDLVDTMRAAPGVGITAAHIGVLRRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+L      +    +INP+I  FS++   + EG +S+P    +V R   I  RY D + +
Sbjct: 61  IELSREDGIR---TYINPEITWFSEETMRHMEGSVSMPGITDEVVRPRAIRFRYQDIDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+G+ ++  LS+LKRD + KK  K
Sbjct: 118 AHEAAAEDFLAICIQHEVDQLDGLFWLQRLSKLKRDRLVKKWEK 161


>gi|290968494|ref|ZP_06560033.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781490|gb|EFD94079.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L]
          Length = 171

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 5/154 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            K  ++   +P+L+  ++P+  I   I  L+D+M E MY  +G+GLAA QI    RL+V+
Sbjct: 19  AKLNIIKAGNPVLKAAAKPVPVITKHIKKLLDDMAETMYKANGVGLAAPQINESLRLIVL 78

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D          +  INP+I+  S +     EGCLS+P Y   V R + I V+ ++   + 
Sbjct: 79  D-----DGNGLIELINPEILETSTEMEEDTEGCLSVPGYYGIVSRYSKIKVKALNRRGKT 133

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                +  LA   QHE+DHLNGILFI+    +++
Sbjct: 134 VYYEPEHFLARIFQHEIDHLNGILFIEKAKNIRK 167


>gi|256544906|ref|ZP_05472277.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170]
 gi|256399405|gb|EEU13011.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170]
          Length = 154

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/148 (44%), Positives = 98/148 (66%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR+ S+ ++++N  I  L+D+M E MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++D       +  +NP+II    +  V  EGCLS+P++ A+VKR A + V+Y+D N  
Sbjct: 61  VDVRDEDG---LIKLVNPEIIEKDGE-QVGVEGCLSVPNFNANVKRPAHVVVKYLDENGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + I A+GL A  L HE+DHLNGILFID
Sbjct: 117 EKKIEAEGLKAVALCHEIDHLNGILFID 144


>gi|332559343|ref|ZP_08413665.1| peptide deformylase [Rhodobacter sphaeroides WS8N]
 gi|332277055|gb|EGJ22370.1| peptide deformylase [Rhodobacter sphaeroides WS8N]
          Length = 167

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTVAAPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  +   +   +   NP+I+  S  F  ++EG  ++P   A + R   +TV +++   + 
Sbjct: 61  DCSESRGKA--IRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVHFLNEAGET 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHL+G L+ID LS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|255282544|ref|ZP_05347099.1| peptide deformylase [Bryantella formatexigens DSM 14469]
 gi|255266837|gb|EET60042.1| peptide deformylase [Bryantella formatexigens DSM 14469]
          Length = 162

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D +L +  + ++++   I  LID+M + MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRNVRIQGDKVLEKKCKEVKEVTPRIRTLIDDMFDTMYEEGGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       + P V INP I   S +     EGCLS+P     V R  ++ VR  D N Q
Sbjct: 61  IDTTG----EEPHVLINPVIEETSGE-QRGYEGCLSLPGKSGIVTRPNYVRVRAFDENMQ 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             ++    LLA  + HE DHL GI++   + 
Sbjct: 116 EYVLEGTELLARAICHECDHLEGIMYTSKVE 146


>gi|300780403|ref|ZP_07090259.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
 gi|300534513|gb|EFK55572.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
          Length = 200

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 7/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P+VI  DP+L   + P+ +  +++  LI +M E M + +G+GLAA QIGV  RL V 
Sbjct: 12  MIRPIVIHGDPVLHTPTEPVTEPVAELKELIADMHETMDAANGVGLAANQIGVNKRLFVY 71

Query: 62  DLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              D    +   V INP + T         D     EGCLS+P       R+ +  V  +
Sbjct: 72  HCPDGDTMRRGTV-INPVLETSDIPKTMPKDDGEDDEGCLSVPGESFPTARAEWAKVTGL 130

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N     +   G  A CLQHE+ HL+G +++D L+   +    + +  
Sbjct: 131 DENGDPVEVEGTGFFARCLQHEVGHLDGYVYLDVLTGRYKREAKRAVKA 179


>gi|163743815|ref|ZP_02151188.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161382964|gb|EDQ07360.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
          Length = 165

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  +  + +I  + + L  +M++ M +  G+GLAA QIGVL RL V
Sbjct: 1   MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID    + R   +   NP+I+  S     ++E   ++P   A +KR   +TVRYMD    
Sbjct: 61  ID--GSSERGRAVRLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  G+ AT +QH+LDHLNG ++ D LS++KRDM+ +K  KL
Sbjct: 119 TVERDFVGIEATSVQHQLDHLNGKMYFDKLSKVKRDMLIRKAKKL 163


>gi|317014203|gb|ADU81639.1| peptide deformylase [Helicobacter pylori Gambia94/24]
          Length = 174

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 107/172 (62%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIETKGSI-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171


>gi|56708685|ref|YP_170581.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110671157|ref|YP_667714.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134302737|ref|YP_001122705.1| peptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156501451|ref|YP_001427516.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010290|ref|ZP_02275221.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368481|ref|ZP_04984498.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254371316|ref|ZP_04987318.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875560|ref|ZP_05248270.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|295312318|ref|ZP_06803105.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|56605177|emb|CAG46308.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110321490|emb|CAL09691.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134050514|gb|ABO47585.1| Peptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151569556|gb|EDN35210.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156252054|gb|ABU60560.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121375|gb|EDO65576.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254841559|gb|EET19995.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 174

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 5/170 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++   D+   +NP +               + +EGCLS P   A V R+  + ++ ++  
Sbjct: 63  IM--YDNLEEQNPEIITIINPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +   +  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 121 GEEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170


>gi|157830807|pdb|1DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr,
           9 Structures
 gi|256599481|pdb|2KMN|A Chain A, Solution Structure Of Peptide Deformylase Complexed With
           Actinonin
          Length = 147

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/149 (42%), Positives = 104/149 (69%), Gaps = 3/149 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID
Sbjct: 2   VLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVID 61

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +  
Sbjct: 62  VSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 118

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            + ADGLLA C+QHE+DHL G LF+D+LS
Sbjct: 119 ELEADGLLAICIQHEMDHLVGKLFMDYLS 147


>gi|322378951|ref|ZP_08053365.1| peptide deformylase [Helicobacter suis HS1]
 gi|322379805|ref|ZP_08054102.1| peptide deformylase [Helicobacter suis HS5]
 gi|321147773|gb|EFX42376.1| peptide deformylase [Helicobacter suis HS5]
 gi|321148627|gb|EFX43113.1| peptide deformylase [Helicobacter suis HS1]
          Length = 172

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 102/167 (61%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LV +PD  LR +S  +E  ++ +  L+++M E M +  GIGLAA+Q+GV  R+++
Sbjct: 2   MAILDLVHYPDKRLRGLSTEVEVFDTALHTLLEDMQETMLANKGIGLAAIQVGVAKRILI 61

Query: 61  IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L     ++ P   +  INP ++  ++   +++EGCLS+P++  +++R A + + Y D 
Sbjct: 62  INLPRQDEQQYPEDCLEIINPTLL-HAEGQILWREGCLSVPEFYEEIQRFARVKLAYCDR 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               Q + A  LL+  +QHE+DHLNGILF+D LS LKR    K+  K
Sbjct: 121 YGDPQELQASDLLSVAIQHEIDHLNGILFVDRLSMLKRKKFEKEFRK 167


>gi|282900896|ref|ZP_06308832.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194234|gb|EFA69195.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii
           CS-505]
          Length = 190

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/143 (44%), Positives = 89/143 (62%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I KI+ ++  LI +ML+ MYS DGIGLAA Q+GV  +LVVID      
Sbjct: 22  LGDRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKP 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P++ INP I   S +  V QEGCLSIP    +VKR   + + Y D   + Q + AD 
Sbjct: 82  EMPPLILINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADN 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA C+ HE+DHLNG++F+D + 
Sbjct: 142 LLARCILHEMDHLNGVVFVDRVE 164


>gi|78778228|ref|YP_394543.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251]
 gi|78498768|gb|ABB45308.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251]
          Length = 178

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/171 (36%), Positives = 104/171 (60%), Gaps = 4/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  +V +PD  L+  S+ +EK + ++  L++ M   M  ++GIGLAA+Q+G   +++++
Sbjct: 1   MKLTIVEYPDKRLKEKSKIVEKFDEELHKLLEAMYASMIESNGIGLAAIQVGYAKQVLLL 60

Query: 62  DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ D      R + +  INP IIT S+  ++YQEGCLS+P +  DV R   + V Y D  
Sbjct: 61  NIPDDNDEQSRDSLIEMINP-IITQSEGETIYQEGCLSVPSFYEDVSRFERVCVNYQDRE 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + I A GLL+  +QHE+DHL+G+LFID LS  +R    K+  K+ + +
Sbjct: 120 GNTKTIEATGLLSVAIQHEIDHLHGVLFIDKLSYSRRKKFEKEYKKVQKEK 170


>gi|89098706|ref|ZP_01171588.1| peptide deformylase [Bacillus sp. NRRL B-14911]
 gi|89086668|gb|EAR65787.1| peptide deformylase [Bacillus sp. NRRL B-14911]
          Length = 181

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +V +P  IL      + + +  ++ L+++M + M   DG+GLAA QIG+  R+ V+
Sbjct: 22  AVRKIVTYPAEILEEPCETVTEFDKKLVKLLNDMYDTMIEFDGVGLAAPQIGIRKRIAVV 81

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ D          INP+II    +     EGCLS P    +V R   + ++  D   + 
Sbjct: 82  DIDDENGTIE---LINPEIIETGGE-QTGPEGCLSFPGLYGEVTRPFTVKIKAQDRKGKS 137

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + AD  LA  +QHE+DHL+G+LF   ++R
Sbjct: 138 FTLEADDFLARAIQHEIDHLDGVLFTSKVNR 168


>gi|217032886|ref|ZP_03438363.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128]
 gi|298736496|ref|YP_003729022.1| peptide deformylase [Helicobacter pylori B8]
 gi|216945380|gb|EEC24048.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128]
 gi|298355686|emb|CBI66558.1| peptide deformylase [Helicobacter pylori B8]
          Length = 174

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKWIET-GGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|317178847|dbj|BAJ56635.1| peptide deformylase [Helicobacter pylori F30]
          Length = 175

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169


>gi|291450059|ref|ZP_06589449.1| polypeptide deformylase [Streptomyces albus J1074]
 gi|291353008|gb|EFE79910.1| polypeptide deformylase [Streptomyces albus J1074]
          Length = 215

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 75/146 (51%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +      +  L++++   MY+  G+GLAA QIGV  R+ V D
Sbjct: 45  VRPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHD 104

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D   R++    +NP+++          EGCLS+P   A  +R     V  +D   + +
Sbjct: 105 CPDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPR 164

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
            ++  G  A CLQHE DHL+G L++D
Sbjct: 165 TVHGTGFFARCLQHESDHLDGTLYVD 190


>gi|282863154|ref|ZP_06272214.1| peptide deformylase [Streptomyces sp. ACTE]
 gi|282562136|gb|EFB67678.1| peptide deformylase [Streptomyces sp. ACTE]
          Length = 166

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 63/141 (44%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +  DP+L      +      +  L+++M   MY+  G+GLAA QIGV  R+ V D  D  
Sbjct: 3   LLGDPVLHSPCEEVTDFGPSLARLVEDMFATMYAAHGVGLAANQIGVPLRVFVYDCPDDD 62

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
             ++    +NP  +          EGCLS+P   A   R     V       +   +   
Sbjct: 63  EVRHLGHLVNPVCVEADGITVRGPEGCLSLPGLEAGTPRFDRTVVEGRTVTGEPVRVTGT 122

Query: 128 GLLATCLQHELDHLNGILFID 148
           G  A CLQHE DHL+G ++ D
Sbjct: 123 GWFARCLQHECDHLDGTVYPD 143


>gi|295100691|emb|CBK98236.1| peptide deformylase [Faecalibacterium prausnitzii L2-6]
          Length = 178

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G+L R+ V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRVFV 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P       + F+NP+I+  S+D     EGCLS P +   V R   + VR
Sbjct: 61  VWDTTDAPEEIPENYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             D N +   + A+GLLA C+QHE DHL+GI  ++
Sbjct: 121 AQDRNGEWFELEAEGLLARCIQHENDHLDGITIME 155


>gi|323359861|ref|YP_004226257.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
 gi|323276232|dbj|BAJ76377.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
          Length = 188

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 5/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +  +++I  ++  L+ +M E M +  G+GLAA Q+GV  R+  
Sbjct: 1   MAVLPIRIMGDPVLHAPAARVDEITEEVRTLVADMFETMDAAPGVGLAAPQVGVGLRIFT 60

Query: 61  IDLQDHAHRKNPMVFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +D        V INP+     +     D     EGCLS P  R  ++RS    +  +
Sbjct: 61  YTYEDDEGLPWRGVVINPELWIRPLEPGYPDPDDESEGCLSFPGERFPLRRSDAALLTGV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D + +   I   G  A  LQHE DHL+GIL++D L      ++ K   K    +
Sbjct: 121 DLDGRPVRIEVTGWRARILQHEFDHLDGILYVDRLDDEDSRVVAKIAKKRKWGK 174


>gi|312793226|ref|YP_004026149.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312876962|ref|ZP_07736937.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796277|gb|EFR12631.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180366|gb|ADQ40536.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 166

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 101/169 (59%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+I   S+  +V  EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGA-----IELVNPEI-EHSEGSAVDVEGCLSVPNVWGEVERPQKVIVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL-KRDMITKKMSKLVQL 168
              + A+GLLA  + HE+DHL+GILF+D + R    + I ++ SK  ++
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSKGEKM 163


>gi|255348717|ref|ZP_05380724.1| peptide deformylase [Chlamydia trachomatis 70]
 gi|255503257|ref|ZP_05381647.1| peptide deformylase [Chlamydia trachomatis 70s]
 gi|289525394|emb|CBJ14871.1| peptide deformylase [Chlamydia trachomatis Sweden2]
 gi|296434946|gb|ADH17124.1| peptide deformylase [Chlamydia trachomatis E/150]
 gi|296438666|gb|ADH20819.1| peptide deformylase [Chlamydia trachomatis E/11023]
          Length = 181

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PIL +V+ P+ +I  ++  L+ +M E M    G+GLAA Q+G    L ++
Sbjct: 1   MIRDLEYYDSPILHKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 60

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P VFINP I   S+      EGCLSIP  R +V R   ITV   
Sbjct: 61  GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167
           + + Q   +  +G LA  + HE DHL+G+L+ID +S + K       + K+ +
Sbjct: 121 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173


>gi|149194678|ref|ZP_01871773.1| peptide deformylase [Caminibacter mediatlanticus TB-2]
 gi|149135101|gb|EDM23582.1| peptide deformylase [Caminibacter mediatlanticus TB-2]
          Length = 173

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 101/161 (62%), Gaps = 4/161 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P+ IL+++S+P+E+ +S++  L+D+M E M + +GIGLAA+Q+GV  R ++
Sbjct: 1   MAILDIVTYPNKILKQISKPVERFDSELHKLLDDMYETMIAKNGIGLAAIQVGVPIRALL 60

Query: 61  IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           IDL D   +++    +  INP+ + +      Y EGCLS+PDY  +V+R   + V++ D 
Sbjct: 61  IDLGDEEGKQSKDTLIEVINPEFLEWDGSL-KYNEGCLSVPDYFDEVERYKKVKVKFFDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
             +  I+ A+ LL+   QHE DHL+G +FI+ L  +KR   
Sbjct: 120 FGKEHIVDAEDLLSVAFQHETDHLDGHVFIERLDYIKRKKF 160


>gi|77464454|ref|YP_353958.1| formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|77388872|gb|ABA80057.1| Formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1]
          Length = 167

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 98/166 (59%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  ++  +   +   NP+I+  S  F  ++EG  ++P   A + R   +TVR+++   + 
Sbjct: 61  DCSENRGKA--IRLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGEI 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHLNG L+ID LS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLNGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|302533115|ref|ZP_07285457.1| peptide deformylase [Streptomyces sp. C]
 gi|302442010|gb|EFL13826.1| peptide deformylase [Streptomyces sp. C]
          Length = 182

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 72/149 (48%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +P+ +  +P+L      +     ++  LI++M   MY+  G+GLAA QIG   R+ V D
Sbjct: 13  VRPMTLLGEPVLHSPCAEVTDFGPELDRLIEDMFATMYAAQGVGLAANQIGTGLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++    D     EGCLS+P   A   R     V  +  +    
Sbjct: 73  CPDDEDVRHVGHVVNPRLVEADGDEFRGPEGCLSLPGLEAGTVRFDRAVVEGVTSDGAPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            +   G  A CLQHE DHL+G ++ D ++
Sbjct: 133 RVEGTGFFARCLQHECDHLDGTVYADRVT 161


>gi|297157414|gb|ADI07126.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 209

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  R + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 33  TARPITVVGNPVLHKECRDVTEFDDKLAALIDDMFASQKAAEGVGLAANQIGVALKVFVY 92

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +     D  V     EGCLS+P   A + R  +  VR  D  
Sbjct: 93  DCPDDDGVRHVGVVCNPVLDELPADRRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAE 152

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 153 GKPIAVQGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 198


>gi|85700137|gb|ABC74518.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 107/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+MLE M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMLETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|302521840|ref|ZP_07274182.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|302430735|gb|EFL02551.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 210

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  +P+L +    + +   ++  L+D+M     + +G+GLAA Q+GV  ++ V D Q
Sbjct: 37  PITVVGNPVLHKECADVTEFGPELTKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDCQ 96

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D    ++  V  NPK+     +        EGCLS+P   A   R+ +  V   D +   
Sbjct: 97  DDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGNA 156

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +   G  A CLQHE DHL G L++D LS+  R    K+M++
Sbjct: 157 IKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199


>gi|118443183|ref|YP_878318.1| peptide deformylase [Clostridium novyi NT]
 gi|118133639|gb|ABK60683.1| peptide deformylase [Clostridium novyi NT]
          Length = 150

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  R +E+IN  I+ LI++M E MY  DG+GLAA Q+G+L RLVV
Sbjct: 1   MALRNIRVEEDSILRKKCREVEEINDRILTLIEDMKETMYEADGVGLAAPQVGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II  S+      EGCLS+P  +  V R   +T + ++   +
Sbjct: 61  IDVGE-----GPITLINPEIIE-SEGSQTDYEGCLSLPGKQGKVTRPYKVTAKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              I  +GLLA  + HELDHL+G LFID +
Sbjct: 115 PVEIKGEGLLARAICHELDHLDGTLFIDKV 144


>gi|21223589|ref|NP_629368.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|256785300|ref|ZP_05523731.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|289769194|ref|ZP_06528572.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|23396574|sp|Q9K4A0|DEF4_STRCO RecName: Full=Peptide deformylase 4; Short=PDF 4; AltName:
           Full=Polypeptide deformylase 4
 gi|8546887|emb|CAB94606.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|289699393|gb|EFD66822.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 216

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +    +     +   L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECEDVTDFGEEFQQLVADMFASQRTAEGVGLAANQIGVSKKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPRLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|218439032|ref|YP_002377361.1| peptide deformylase [Cyanothece sp. PCC 7424]
 gi|218171760|gb|ACK70493.1| peptide deformylase [Cyanothece sp. PCC 7424]
          Length = 187

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/146 (39%), Positives = 88/146 (60%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ ++ I K++  +  L   ML+ MYS++GIGLAA Q+ V  +L+VID +
Sbjct: 18  EIHYLGDRVLRQPAKRIAKVDESVRQLAKEMLQTMYSSNGIGLAAPQVAVNKQLLVIDCE 77

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INP+I   S +   ++EGCLSIP    DV R   I V Y D + + + +
Sbjct: 78  PDNPANPPLILINPQITQSSQELCQFEEGCLSIPGVYLDVVRPKVIEVSYKDESGRPKKL 137

Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150
            A  LLA  +QHE+DHLNGI+F+D +
Sbjct: 138 KATDLLARVIQHEMDHLNGIMFVDRV 163


>gi|296273945|ref|YP_003656576.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299]
 gi|296098119|gb|ADG94069.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299]
          Length = 170

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 4/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+ +LR  S+ + K + ++  L+D+M E M +  G+GLAA+Q+ V   +++I
Sbjct: 1   MVREVITYPNKLLREKSKDVVKFDDELHTLLDDMYETMIAQSGVGLAAIQVAVPLNVLII 60

Query: 62  DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            + D      + + +  INPKI T  D   V+ EGCLS+P +  DVKR+  I V Y D  
Sbjct: 61  LIPDENDIQAKDSLIEAINPKI-THKDGIQVFTEGCLSVPGFNEDVKRAQHIIVEYQDRF 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +Q +  +  LA   QHE+DHL G LFI+ LS +KR    K+  K  + +
Sbjct: 120 GNNQKMETEDFLAVAWQHEMDHLEGHLFIEKLSLMKRKKFEKEYKKSQKSK 170


>gi|116252298|ref|YP_768136.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256946|emb|CAK08040.1| putative peptide deformylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 164

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   +S +  L +++L  M +  G+G+ A  IGV  R+ V
Sbjct: 1   MPIRPILRYPHPGLKTVCAPVTVFDSSLTALAEDLLATMRAAPGVGITAAHIGVFSRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +   ++ NP I  FS +   + EG +S+P    +V R   I  RY D    
Sbjct: 61  LELDKADGVR---LYFNPHITWFSKETMDHTEGSVSMPGATDEVTRPRAIRFRYQDAEGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 118 VHEDGAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161


>gi|302558503|ref|ZP_07310845.1| peptide deformylase [Streptomyces griseoflavus Tu4000]
 gi|302476121|gb|EFL39214.1| peptide deformylase [Streptomyces griseoflavus Tu4000]
          Length = 216

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +     ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHQECQDVTDFGEELQQLVADMFASQRTAEGVGLAANQIGVDKKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    +        EGCLS+P     + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVICNPELVELPAEKRRLDDSNEGCLSVPTAYMPLARPDYAEVTGRDEQ 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|307637482|gb|ADN79932.1| Peptide deformylase [Helicobacter pylori 908]
 gi|325996072|gb|ADZ51477.1| Peptide deformylase [Helicobacter pylori 2018]
 gi|325997668|gb|ADZ49876.1| Peptide deformylase [Helicobacter pylori 2017]
          Length = 174

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIETKGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|49089809|gb|AAT51863.1| peptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|315586543|gb|ADU40924.1| peptide deformylase [Helicobacter pylori 35A]
          Length = 175

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169


>gi|17433052|sp|Q9FV54|DEF1B_SOLLC RecName: Full=Peptide deformylase 1B, chloroplastic; Short=PDF 1B;
           AltName: Full=Polypeptide deformylase; Flags: Precursor
 gi|11320950|gb|AAG33972.1| peptide deformylase-like protein [Solanum lycopersicum]
          Length = 279

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 90/162 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  ++++  L+D M ++MY TDGIGL+A Q+G+  +L+V +   
Sbjct: 89  IVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNAAG 148

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP++  +S     Y+EGCLS P    DVKR   + V   D N     I 
Sbjct: 149 ERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFEIS 208

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              L A   QHE DHL G+LF D ++    D I +K+  L +
Sbjct: 209 LSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALEK 250


>gi|153010428|ref|YP_001371642.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
 gi|151562316|gb|ABS15813.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
          Length = 166

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V +PD  LR V+ P+ + +SD+  L  ++L+ M +  GIG+ A  +G+  RLVV
Sbjct: 1   MTVRPIVSYPDKRLRAVAEPVTQFDSDLQELGTDLLDTMRAAPGIGITAPHVGISKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L        P  ++NP+I+  SD+   +QEG +S+P    DV+R A I +RY D +  
Sbjct: 61  LELP---TELTPKFYVNPEIVWASDEKIHHQEGSVSMPGVVDDVERHARIKIRYQDLSGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q   ++GLLA C QHE+D L+GI +I  LSRL+RD + K+  K  + R
Sbjct: 118 EQTEESEGLLAVCHQHEIDQLDGIFWIQRLSRLRRDRLIKRFEKSQRQR 166


>gi|114766695|ref|ZP_01445634.1| N-formylmethionyl tRNA deformylase [Pelagibaca bermudensis
           HTCC2601]
 gi|114541085|gb|EAU44140.1| N-formylmethionyl tRNA deformylase [Roseovarius sp. HTCC2601]
          Length = 165

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++++PDP L++    +    + +  L+ +MLE MY   G GLAA Q+GVL R+ V
Sbjct: 1   MALREILLWPDPKLKQPCAEVGDP-AAVSELVTDMLETMYDAPGRGLAAPQVGVLKRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+V I+P+I+  SD+ +   EGCLSIP   A+V+R  ++ + Y D N  
Sbjct: 60  MDAGWKDGDMTPVVCIDPQILAVSDETAAGDEGCLSIPGVTANVRRPVWVRMAYTDLNGD 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            Q    +G  A   QHE DHL+G++  D L  
Sbjct: 120 RQERRFEGAEAIVAQHEYDHLDGLVHFDRLDP 151


>gi|119357657|ref|YP_912301.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266]
 gi|158512604|sp|A1BHK0|DEF_CHLPD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|119355006|gb|ABL65877.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266]
          Length = 188

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+ D +LR  ++P++ I+ +I +L+ +MLE M +  GIGLAA Q+G   RL+VI
Sbjct: 1   MILPINIYNDEVLRATAKPLKGIDRNIRDLVASMLESMRNASGIGLAAPQVGCSIRLLVI 60

Query: 62  DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DL       +  P+V INP ++     ++  +EGCLS+P    DV R + IT++Y D + 
Sbjct: 61  DLSCMEKYADEKPVVVINPHLLAVKG-YNAMEEGCLSLPGILGDVVRPSSITLKYRDEHF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           + +     G++A  LQHE+DHL+G LFID + +  R  I K++  L 
Sbjct: 120 EERTGEFSGMMARVLQHEIDHLDGKLFIDRMQKRDRRKIDKELHSLA 166


>gi|297588336|ref|ZP_06946979.1| peptide deformylase [Finegoldia magna ATCC 53516]
 gi|297573709|gb|EFH92430.1| peptide deformylase [Finegoldia magna ATCC 53516]
          Length = 162

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 3/160 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+ SR ++KI+  I  ++D+M E MY   GIGLA VQ+G+L R+VV
Sbjct: 1   MALRQIRLENDPILRKKSREVKKIDDRIKQIVDDMFETMYENKGIGLACVQVGMLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD   +   MV INPKI+  SD+  +  EGCLS+P     V+R   +TV Y D +  
Sbjct: 61  IDMQDEDGK---MVLINPKIVERSDEKQINVEGCLSVPGKNGYVERPKTVTVEYTDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            Q   A    A C  HELDHL+G+L+ D +  L  + + +
Sbjct: 118 IQRKTATDYKAHCFCHELDHLDGVLYTDKVLNLSDEEVER 157


>gi|261837976|gb|ACX97742.1| polypeptide deformylase [Helicobacter pylori 51]
 gi|317177377|dbj|BAJ55166.1| peptide deformylase [Helicobacter pylori F16]
 gi|317180556|dbj|BAJ58342.1| peptide deformylase [Helicobacter pylori F32]
          Length = 175

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169


>gi|256826367|ref|YP_003150327.1| peptide deformylase [Kytococcus sedentarius DSM 20547]
 gi|256689760|gb|ACV07562.1| peptide deformylase [Kytococcus sedentarius DSM 20547]
          Length = 192

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I     L + ++ + ++  +I  L+ +M + M + +G+GLAA Q+GV +R+ V
Sbjct: 1   MAVRPITIIGHKALHQPTKKVREVTDEIRTLVADMFDTMEAAEGVGLAANQVGVRWRIFV 60

Query: 61  IDL--QDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            D      A      V +NP +        S D     EGCLS+P       RS +  V 
Sbjct: 61  YDCTHDPEAGPDARGVVVNPVLEKEHVSPLSADPEADHEGCLSVPGESFPTARSDWARVT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D +     +   GLL  CLQHE DHL+G L+++ LS   +      + +
Sbjct: 121 GTDLDGNAISVEGTGLLGRCLQHETDHLDGHLYVERLSPEDKRRARDAIKE 171


>gi|104161993|emb|CAJ75702.1| N-formylmethionyl-tRNA deformylase [uncultured Thermotogales
           bacterium]
          Length = 166

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV   ++   +PILR VS  +E  + D+   +  + + MY  DG+GLAA Q+ V  R+ V
Sbjct: 1   MVGMKVIHIGNPILRNVSESVEVFDDDLRAFVKELSKTMYVEDGVGLAAPQVAVSRRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D        V INP+I++ SD+    +EGCLSIP   AD+ R + + + Y D   Q
Sbjct: 61  YDPGD-----GLRVVINPEILSKSDEIVKMEEGCLSIPGIYADIDRPSAVRIHYQDEYGQ 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           H         A  +QHE DHL G+LF+D+LS  KR M+  K++++++ 
Sbjct: 116 HHEEDLTEYPARIVQHESDHLEGVLFVDYLSASKRAMLKPKLNQIIKE 163


>gi|86137256|ref|ZP_01055834.1| peptide deformylase [Roseobacter sp. MED193]
 gi|85826580|gb|EAQ46777.1| peptide deformylase [Roseobacter sp. MED193]
          Length = 165

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +I  +  +M+E M +  G+GL A QIGV+ RL V
Sbjct: 1   MTARTCLPWPDKRLRTAATEVSEITDEIRAIWTDMIETMEAMPGVGLGANQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+++  S     ++E   ++P   A +KR   +TVRYMD N +
Sbjct: 61  VD--GSRERGKAVRMANPEVLHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  G+ AT +QH++DHLNG LF DHLS++KRDM+ KK  KL
Sbjct: 119 ITERDFVGIEATSVQHQIDHLNGKLFFDHLSKVKRDMLIKKSKKL 163


>gi|255020222|ref|ZP_05292291.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
 gi|254970364|gb|EET27857.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
          Length = 168

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 72/167 (43%), Positives = 105/167 (62%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +PD  L++ + PI +I+ DI  L D+M E MY+  GIGLAA+Q+    RL+V
Sbjct: 1   MALLKIVEYPDVRLKQEAAPIARIDRDIEALADDMAETMYAAPGIGLAAIQVAAPQRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   R   +  +NP+II         QEGCLS+P     V+R+  + VR +D   +
Sbjct: 61  VDVSEA--RNELLTLVNPEIIES-SGEEEMQEGCLSVPGVLETVRRAERVKVRALDLRGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA CLQHE+DHLNG LF+DHLSRLK+++I +K  K ++
Sbjct: 118 TLELEADGLLAVCLQHEIDHLNGTLFVDHLSRLKQNLIRRKAEKRLR 164


>gi|254384637|ref|ZP_04999976.1| peptide deformylase 1 [Streptomyces sp. Mg1]
 gi|194343521|gb|EDX24487.1| peptide deformylase 1 [Streptomyces sp. Mg1]
          Length = 214

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R  + + +   D+  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 38  TARPITVVGNPVLHRECKDVTEFGEDLARLIDDMFASQKAAEGVGLAANQIGVDAKVFVY 97

Query: 62  DLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V INPK++     S       EGCLS+P   A + R  +  V   D  
Sbjct: 98  DCPDDDGVRHTGVVINPKLVELPAASRVLDDSNEGCLSVPTAYAALARPDYAEVEGRDAQ 157

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M +
Sbjct: 158 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 203


>gi|307328554|ref|ZP_07607728.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306885822|gb|EFN16834.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 200

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ ++ +P+L +  R +   + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 24  TARPITVYGNPVLHKECRDVTVFDEELARLVDDMFASQRAAEGVGLAANQIGVDLKVFVY 83

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---EGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++     NP +     D  V     EGCLS+P    ++ R  +  VR  D +
Sbjct: 84  DCMDDEGVRHVGAVCNPVLEELPADRRVLDDSNEGCLSVPTAYMELARPDYAVVRGQDLD 143

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   +   G  A CLQHE DHL G L+ D LS+  R  + K+M++
Sbjct: 144 GEPIAVRGTGYFARCLQHETDHLYGYLYTDRLSKRDRKDVLKQMAE 189


>gi|254486314|ref|ZP_05099519.1| peptide deformylase [Roseobacter sp. GAI101]
 gi|214043183|gb|EEB83821.1| peptide deformylase [Roseobacter sp. GAI101]
          Length = 159

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +VI+PD  L +V +P+E I   I  LI +M + MY+  G GLAA Q+G   R+ V
Sbjct: 1   MSVLDIVIWPDARLTQVCQPVEGITPGITQLIADMFDTMYAAPGRGLAAPQVGRSERIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D         P+  +NP+II  S+     +EGCLSIP+   D++R+A +T+R+ D    
Sbjct: 61  FDAGWKDGAPTPVACVNPEIIDLSEGRLTGEEGCLSIPNTPMDIERAAQVTLRWTDPEG- 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
                  G  A  +QHE DHL+GI+  D + +  + 
Sbjct: 120 THERTFTGAEAVIVQHEYDHLDGIVIYDRVEKDVKK 155


>gi|33860628|ref|NP_892189.1| peptide deformylase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|39930841|sp|Q7V3K7|DEF_PROMP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33633570|emb|CAE18527.1| putative formylmethionine deformylase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 201

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/160 (39%), Positives = 100/160 (62%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR  ++ I K+++ I NL  +ML+ MY+  GIGLAA QIG+   L+VID+ 
Sbjct: 32  EIYKLGDDVLRENAKRISKVDNSIRNLAKDMLQSMYAAKGIGLAAPQIGIKKELLVIDVN 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INP+I  +    + Y+EGCLSIP    +V R + I +R+ D   + + +
Sbjct: 92  FEDAAAEPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLRFRDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHE+DHLNG+LF+D ++   ++ + K++ K
Sbjct: 152 KADGLLARCIQHEMDHLNGVLFVDRVTS--KEDLNKELIK 189


>gi|301632277|ref|XP_002945217.1| PREDICTED: peptide deformylase 1-like [Xenopus (Silurana)
           tropicalis]
          Length = 217

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/141 (42%), Positives = 90/141 (63%), Gaps = 2/141 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  +++ I +L+ +ML  MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHQVAQPVRAVDARIQSLVSDMLATMYDAQGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R  P+V INP+I+  S +  V  EGCLS+P     V+R + + VR +D    
Sbjct: 61  IDTSE--ERNQPLVLINPEIVWASAEKVVRDEGCLSVPGIYDGVERCSAVHVRALDEKGA 118

Query: 121 HQIIYADGLLATCLQHELDHL 141
            ++I A+GLLA C+QHE+DHL
Sbjct: 119 ARVIQAEGLLAVCMQHEMDHL 139


>gi|182625873|ref|ZP_02953639.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
 gi|177908907|gb|EDT71399.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
          Length = 147

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    D ILR+  R ++ IN  I  L+++M+E M+  +G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMHENNGVGLAAPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D A  +   VFINP+I+  S +    +EGCLS+P     VKR+  I ++ +D N  
Sbjct: 61  VDAMDGAGSR---VFINPEILEKSGE-QTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
             ++ A+  LA  +QHE DHL G+LFIDH
Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145


>gi|269215460|ref|ZP_06159314.1| peptide deformylase [Slackia exigua ATCC 700122]
 gi|269130947|gb|EEZ62022.1| peptide deformylase [Slackia exigua ATCC 700122]
          Length = 187

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 88/155 (56%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++ +PDP LR+V    +  +  +  L   M + MY+ +G GLAA Q+GVL RL+VID  
Sbjct: 12  EVLAYPDPTLRQVCEDCDPADKSLRKLARRMAKTMYADNGCGLAAPQVGVLKRLIVIDCD 71

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +  KNP+  +NP +I       V +EGCLS+P     ++R A+  VRY D N +  II
Sbjct: 72  QDSGAKNPITLLNPTVIETRGPEVVEEEGCLSVPGITVPIRRPAYAIVRYTDLNGEDWII 131

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             DGLLA CLQHE+DHLNGI   +     +R    
Sbjct: 132 EGDGLLARCLQHEIDHLNGITLFESCDLNERIKAM 166


>gi|302874748|ref|YP_003843381.1| peptide deformylase [Clostridium cellulovorans 743B]
 gi|307690637|ref|ZP_07633083.1| peptide deformylase [Clostridium cellulovorans 743B]
 gi|302577605|gb|ADL51617.1| peptide deformylase [Clostridium cellulovorans 743B]
          Length = 149

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 6/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ S+ +E I+     LI +M++ MY  DG+GLAA Q+G+L ++ V
Sbjct: 1   MAIRNIRTVGDAVLRKNSKNVEVIDDRTKVLIQDMIDTMYDADGVGLAAPQVGILKKIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+VFINP+I+     + V  EGCLSIP   A+V+R   + V+ ++ N +
Sbjct: 61  IDIGE-----GPIVFINPEILETEGSY-VDSEGCLSIPGESAEVERPYKVKVKALNENGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
             I+  + LLA  + HE DHL G L+ID 
Sbjct: 115 EFILEGEELLARAICHENDHLYGTLYIDR 143


>gi|228470000|ref|ZP_04054916.1| peptide deformylase [Porphyromonas uenonis 60-3]
 gi|228308381|gb|EEK17219.1| peptide deformylase [Porphyromonas uenonis 60-3]
          Length = 188

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 93/175 (53%), Gaps = 6/175 (3%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M K  P+ ++  P+LR +S  I     ++  LI +M + MY +DGIGLAA QIG   RL 
Sbjct: 1   MAKTLPIYLYGQPVLRNMSEDITPDYPNLSELIADMWQTMYESDGIGLAAPQIGRNIRLQ 60

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           VID               +V IN  + + S+D     EGCLS+P     V R   I V Y
Sbjct: 61  VIDATPLEDEYPECATLKLVMINAHMQSLSEDTCSEAEGCLSLPGINERVVRPKSIVVDY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           M+   + Q +   G  A  +QHE DHL+G LF+DH+S +++ +I KK+  +V  R
Sbjct: 121 MNEQFEPQRLELSGYAARVVQHEYDHLDGKLFVDHISAMRKRLIKKKLQHIVDGR 175


>gi|209526681|ref|ZP_03275205.1| peptide deformylase [Arthrospira maxima CS-328]
 gi|209492917|gb|EDZ93248.1| peptide deformylase [Arthrospira maxima CS-328]
          Length = 187

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/147 (40%), Positives = 88/147 (59%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ ++ + +I+ +I  L+  ML+ MYS DGIGLAA Q+GV  +++VID +
Sbjct: 18  DIHYLGDRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIVIDCE 77

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP I   S + S +QEGCLSIP    DV R   + V + D N + + I
Sbjct: 78  PDNAATPPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGRPRSI 137

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
            A  LL   +QHE+DHL G+LF+D + 
Sbjct: 138 LATELLCRAIQHEIDHLQGVLFVDRVD 164


>gi|32307482|gb|AAP79146.1| peptide deformylase [Bigelowiella natans]
          Length = 315

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 4/166 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP LR  +  I +    +  L D M +VMY  DG GLAA Q+G+ YRL+V + Q 
Sbjct: 124 VIKYPDPRLRTENEKITEFGKPLQELADEMFDVMYDDDGCGLAAPQVGINYRLMVFNPQG 183

Query: 66  HAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
              +K+  MV  NP+II+  ++   ++EGCLS P  R  V+R   + +R  D   +    
Sbjct: 184 DRRKKDTEMVLANPEIISSGEEKDWFREGCLSFPGIRGQVERPTKVLIRAQDVKGEDIEF 243

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +G  A   QHE DHL+G LF D +       + +  +KLV L D
Sbjct: 244 ELEGFTARVFQHEYDHLSGTLFHDRMPD---KEVAEIHAKLVTLED 286


>gi|71281182|ref|YP_267165.1| peptide deformylase [Colwellia psychrerythraea 34H]
 gi|71146922|gb|AAZ27395.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
          Length = 166

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  P+  L   ++P+  + S I  LID+++E MY T DGIGLAA Q+G    +V
Sbjct: 1   MTVLTILTAPNDKLIEQAKPVSDV-SQIQMLIDDLIETMYDTEDGIGLAATQVGRSEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D  +R   +V +NP I T  +  +  QEGCLSIP Y ADV+R   +TV  +D N 
Sbjct: 60  VIDISD--NRDELLVLVNPVI-THGEATAKGQEGCLSIPGYYADVERFTHVTVEALDRNG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   I +D  LA  +QHE+DHL G LFID+LS LK+ M  KK+ K ++
Sbjct: 117 KELTITSDEFLAIVMQHEIDHLKGKLFIDYLSPLKQQMALKKVKKTIK 164


>gi|210134993|ref|YP_002301432.1| peptide deformylase [Helicobacter pylori P12]
 gi|238058211|sp|B6JM24|DEF_HELP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|210132961|gb|ACJ07952.1| polypeptide deformylase [Helicobacter pylori P12]
          Length = 174

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIETKGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|212695671|ref|ZP_03303799.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677344|gb|EEB36951.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 162

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/148 (43%), Positives = 99/148 (66%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR+ S+ ++++N  I  L+D+M E MY  DG+GLAA Q+G+L R++V
Sbjct: 10  MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 69

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D++D       +  +NP+II    +  V  EGCLS+P++ A+VKR A + V+Y+D N +
Sbjct: 70  VDIRDEDG---LIKLVNPEIIEKDGE-QVGVEGCLSVPNFNANVKRPAHVIVKYLDENGE 125

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + I A+GL A  L HE+DHLNG+LFID
Sbjct: 126 EKKIEAEGLKAVALCHEIDHLNGVLFID 153


>gi|126728526|ref|ZP_01744342.1| peptide deformylase [Sagittula stellata E-37]
 gi|126711491|gb|EBA10541.1| peptide deformylase [Sagittula stellata E-37]
          Length = 163

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P V +PD  LR  +  ++ I  +I  +  +M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTVRPFVPWPDKRLRAAAAQVDAITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R   +   NP+I+  S     ++EG  ++P   A + R   +TV Y+D    
Sbjct: 61  VDASDA--RGQAVRMANPEILHASVQLRDHEEGSPNLPGVWAKIARPRAVTVAYIDETGL 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  GL AT +QH++DHLNG ++ D LS++KRDM+ +K  K+
Sbjct: 119 RVERDFVGLWATSVQHQVDHLNGRMYFDRLSKVKRDMLIRKARKM 163


>gi|296115525|ref|ZP_06834155.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977920|gb|EFG84668.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 305

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 3/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V+FPD  LR V+ P+   +  +  +  ++L+ + +  GIG+ A  IGVL R+VV+DL 
Sbjct: 142 PIVLFPDQRLRMVAEPVVVFDETLRAMTADLLDTVRAAPGIGITAPHIGVLQRVVVLDLP 201

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P  +INP+I+  SD+ + ++EG +S+P     V+R A + VRY D +    + 
Sbjct: 202 GGLG---PQTYINPEIVWRSDETARHEEGSISMPGVTEVVERPARVRVRYRDVDGHEMME 258

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            ADGL A C QHE+D L G+ +   LS L+R  +  +  K+ ++ 
Sbjct: 259 DADGLRAVCHQHEIDQLEGVFWTQRLSTLRRSRLMSRYEKIKKVE 303


>gi|317009197|gb|ADU79777.1| peptide deformylase [Helicobacter pylori India7]
          Length = 174

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 108/172 (62%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK+I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPKEDGVQHKEDCLEIINPKLIEAGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171


>gi|108563203|ref|YP_627519.1| peptide deformylase [Helicobacter pylori HPAG1]
 gi|123373755|sp|Q1CT77|DEF_HELPH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|107836976|gb|ABF84845.1| polypeptide deformylase [Helicobacter pylori HPAG1]
          Length = 174

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 107/172 (62%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L + +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171


>gi|257438995|ref|ZP_05614750.1| peptide deformylase [Faecalibacterium prausnitzii A2-165]
 gi|257198580|gb|EEU96864.1| peptide deformylase [Faecalibacterium prausnitzii A2-165]
          Length = 178

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G+L R+ V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRIFV 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P       + F+NP+I+  S+D     EGCLS P +   V R   + VR
Sbjct: 61  VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             D N     + A+ LLA C+QHE DHL+GI  ++
Sbjct: 121 AQDRNGNWFELEAENLLARCIQHENDHLDGITIME 155


>gi|148977715|ref|ZP_01814276.1| peptide deformylase [Vibrionales bacterium SWAT-3]
 gi|145963083|gb|EDK28352.1| peptide deformylase [Vibrionales bacterium SWAT-3]
          Length = 170

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  +P++  PD  LR   + ++ +++ +  LID+ML+ +Y T +GIGLAA Q+G    ++
Sbjct: 1   MAIRPIIEVPDDRLRVTYQIVDDVST-VQTLIDDMLDTLYDTDNGIGLAAAQVGHSEAVL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +ID+ +  +R  P++ INP+II   +     +EGCLS+P   A V+R   + V+ ++   
Sbjct: 60  IIDISE--NRDQPLIMINPQIIEH-EGLIDSEEGCLSVPGVYAKVQRHQRVKVQALNRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I  D  LA  +QHE+DHL+G +FID+LS LKR M  KK+ K  + +
Sbjct: 117 EAFTIEDDDYLAIVMQHEIDHLHGKIFIDYLSPLKRKMAMKKIKKFQRAK 166


>gi|150396253|ref|YP_001326720.1| peptide deformylase [Sinorhizobium medicae WSM419]
 gi|150027768|gb|ABR59885.1| peptide deformylase [Sinorhizobium medicae WSM419]
          Length = 163

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +P+  L   + P+ + +  +  L  ++++ M +  GIG+ A  IG+L RL V
Sbjct: 1   MAVRSIIRYPNAALATATEPVSRFDESLRQLAHDLIDTMRAAPGIGITAPHIGILQRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+    A    P  F+NP+I+  S D + + EG +S+P    +V+R A + VR+     +
Sbjct: 61  IETDPQAG---PRSFVNPEILWQSADSTRHSEGSVSMPGIAEEVERPARVRVRFQTLEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                A GL+A CLQHE+D L+GI +I  LSRLKR+   K+  KL
Sbjct: 118 THEEEAAGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAIKRFEKL 162


>gi|24215138|ref|NP_712619.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45657385|ref|YP_001471.1| peptide deformylase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|23396549|sp|Q93LE9|DEF_LEPIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|59797588|sp|Q72S74|DEF_LEPIC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|14626937|gb|AAK70806.1| peptide deformylase [Leptospira interrogans]
 gi|24196204|gb|AAN49637.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45600624|gb|AAS70108.1| putative polypeptide deformylase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 178

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++   DPILR++S P+ +      +   LI +M + M   +G+GLAA QIG+L +
Sbjct: 1   MSVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQ 60

Query: 58  LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +VV+  +D+            + +NP I   + D S + EGCLS+P  R  V+R   I +
Sbjct: 61  IVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRM 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           ++MD          DG  A   QHE DHL GIL++D L   K
Sbjct: 121 QWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 162


>gi|166032719|ref|ZP_02235548.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC
           27755]
 gi|166027076|gb|EDR45833.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC
           27755]
          Length = 156

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L +  + + K++     LI++ML+ MY   G+GLAA Q+GVL R+VV
Sbjct: 1   MAIREIRVLGDDVLTKHCKEVTKMSIRTKILIEDMLDTMYEAMGVGLAAPQVGVLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P++ INP+I+  S +    +EGCLS+P     V R  ++ VR +D +  
Sbjct: 61  IDVGE-----GPIILINPEILETSGE-QTGEEGCLSVPGKCGQVTRPNYVKVRALDEDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA    HE+DHL+G +++D + 
Sbjct: 115 EFEMEGEGLLARAFCHEIDHLDGKMYVDLVE 145


>gi|15611796|ref|NP_223447.1| peptide deformylase [Helicobacter pylori J99]
 gi|8134402|sp|Q9ZL51|DEF_HELPJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|4155293|gb|AAD06310.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99]
          Length = 174

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIETKGSI-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|302338169|ref|YP_003803375.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
 gi|301635354|gb|ADK80781.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
          Length = 161

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++   + +LR  +  + +++  I  L D+M+  M+  DG+GLAA QIGVL RL V  ++ 
Sbjct: 3   ILTLGNELLRERTATVAEVDESIRRLADDMIVTMHEDDGVGLAAPQIGVLKRLFVCHVRG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P VFINP+II  S +   Y+EGCLSIP   ADV R   I V+ +D N +   + 
Sbjct: 63  DV----PRVFINPEIIGTSQEQVRYEEGCLSIPGIYADVLRPESIQVQAIDENGKAFKLA 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           A+GLLA  +QHE+DHL G+LFIDHL   KR  + K   K
Sbjct: 119 AEGLLARVIQHEMDHLKGVLFIDHLEERKRRRLLKLYEK 157


>gi|254720523|ref|ZP_05182334.1| peptide deformylase [Brucella sp. 83/13]
 gi|265985555|ref|ZP_06098290.1| peptide deformylase-like protein [Brucella sp. 83/13]
 gi|306838109|ref|ZP_07470966.1| peptide deformylase [Brucella sp. NF 2653]
 gi|264664147|gb|EEZ34408.1| peptide deformylase-like protein [Brucella sp. 83/13]
 gi|306406846|gb|EFM63068.1| peptide deformylase [Brucella sp. NF 2653]
          Length = 164

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   + D+  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L        P  +INP+I+   ++   +QEG +S+P    +V+R A I + Y D +  
Sbjct: 61  LELDRTTG---PKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLCYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|221640345|ref|YP_002526607.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|221161126|gb|ACM02106.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
          Length = 163

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +   P E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++      EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q  +  G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|260428274|ref|ZP_05782253.1| peptide deformylase [Citreicella sp. SE45]
 gi|260422766|gb|EEX16017.1| peptide deformylase [Citreicella sp. SE45]
          Length = 166

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++++PD  L++    +  + +++  L+ ++ E MY   G GLAA Q+GVL R+ V
Sbjct: 1   MSLREILLWPDERLKQPCETVADV-AEVEQLVTDLFETMYDAPGRGLAAPQVGVLKRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+  INP+I+  S++ +   EGCLSIP   A V+R   + + + D +  
Sbjct: 60  MDAGWKEGDMVPLACINPEIVEVSEETASGPEGCLSIPGVTAQVRRPVRVRMAFTDLSGT 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q    +G  A   QHE DHL G++  D L   +   +  +   
Sbjct: 120 RQERDFEGSEAIVAQHEYDHLEGLVHFDRLDPQEAKALKLEYEA 163


>gi|62317677|ref|YP_223530.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941]
 gi|62197870|gb|AAX76169.1| Def-1, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941]
          Length = 164

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  +G+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHVGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRAAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|260062214|ref|YP_003195294.1| peptide deformylase [Robiginitalea biformata HTCC2501]
 gi|88783776|gb|EAR14947.1| peptide deformylase [Robiginitalea biformata HTCC2501]
          Length = 196

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 64/162 (39%), Positives = 87/162 (53%), Gaps = 12/162 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LRR    I     ++  LI+NM E MY  +G+GLAA Q+G   RL ++
Sbjct: 1   MILPIVAYGDPVLRRKCEAIGPEYPELATLIENMWETMYQANGVGLAAPQVGRPIRLFLV 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A  ++              VFIN ++   +     + EGCLSIPD R DV R   
Sbjct: 61  DTSPFAEDEDFSPEEQEKLRAFKRVFINAQMQEETGKKWAFNEGCLSIPDIREDVTRQDT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           IT+RY D   +      DGLLA  +QHE DH+ GILF DH+S
Sbjct: 121 ITLRYQDAEFKEHTETFDGLLARVIQHEYDHIEGILFTDHIS 162


>gi|308062113|gb|ADO04001.1| peptide deformylase [Helicobacter pylori Cuz20]
          Length = 175

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +DNM E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDNMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169


>gi|283955379|ref|ZP_06372878.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414]
 gi|283793139|gb|EFC31909.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414]
          Length = 676

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 99/157 (63%), Gaps = 3/157 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L   S  + K ++++ NL+D+M E M +++G+GLAA+Q+ V  R++++
Sbjct: 1   MVRKIITYPNPKLFLSSETVNKFDAELHNLLDDMYETMIASNGVGLAAIQVDVPLRVLLV 60

Query: 62  DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++    D   +++ +  INP+II   ++     EGCLS+PD+  +VKR   + ++Y D  
Sbjct: 61  NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHVLLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            + + + A G LA  +QHE DHLNG LFI+ +S  KR
Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157


>gi|188527363|ref|YP_001910050.1| peptide deformylase [Helicobacter pylori Shi470]
 gi|238691921|sp|B2UT38|DEF_HELPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188143603|gb|ACD48020.1| peptide deformylase [Helicobacter pylori Shi470]
          Length = 175

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ I   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEIVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169


>gi|332290887|ref|YP_004429496.1| peptide deformylase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168973|gb|AEE18228.1| peptide deformylase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 196

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 13/181 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+  P+V + DP+L++ ++ I         LI+NM + MY   G+GLAA QIG+  R+ +
Sbjct: 1   MII-PIVAYGDPVLKKKAKDITPEYPKFSELIENMYDTMYEAHGVGLAAPQIGLPIRVFL 59

Query: 61  IDLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           +D    A  ++               F+N +I+    +   + EGCLSIP    DV R  
Sbjct: 60  VDTTPFAEDESYTPEEQEQLANFKKTFVNAEILEEEGEEWAFSEGCLSIPGINEDVFRKP 119

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +T+RY D N +      DGL+A  +QHE DH+ G+LF D LS LK+ +I  K+  + + 
Sbjct: 120 KVTIRYRDENFKEYTETYDGLIARVIQHEYDHIEGVLFTDKLSSLKKRLIKGKLVNISKG 179

Query: 169 R 169
           +
Sbjct: 180 K 180


>gi|254779233|ref|YP_003057338.1| peptide deformylase [Helicobacter pylori B38]
 gi|254001144|emb|CAX29102.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Helicobacter
           pylori B38]
          Length = 174

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|124267003|ref|YP_001021007.1| peptide deformylase [Methylibium petroleiphilum PM1]
 gi|124259778|gb|ABM94772.1| Peptide deformylase [Methylibium petroleiphilum PM1]
          Length = 177

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R++ P+ + +   +  LI++M + M + +G GLAA QIGV  +LV
Sbjct: 1   MAVRDILKMGDPRLLRIAHPVREFDTPALHALIEDMFDTMEAANGAGLAAPQIGVDLQLV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP+I   S+D     EGCLS+P  R  V R   I    
Sbjct: 61  IFGFTKSERYPEAPPVPRTVLINPQITPLSEDLEDGWEGCLSVPGLRGVVPRHQRIRYTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            D   +     A+G  A  +QHE DHL G+L+   +    R   T+ +
Sbjct: 121 FDPQGRRIEREAEGFHARVVQHECDHLAGVLYPMRVRDFSRFGYTEVL 168


>gi|293603522|ref|ZP_06685943.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
 gi|292817958|gb|EFF77018.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
          Length = 177

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +  P++   DP L RV+ P+E+ +  ++  LI +M E M +  G+GLAA QIGV  +LV+
Sbjct: 1   MIHPILKMGDPRLLRVAPPVEQFDTPELHALIADMFETMAAAQGVGLAAPQIGVDLQLVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       +  NP I   SD+     EGCLS+P  R  V R   I     
Sbjct: 61  FGFDRNERYPDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGQVPRYRHIRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D   +     A+G  A  +QHE DHL G L+   +    +   T+
Sbjct: 121 DPYGKLIEREAEGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165


>gi|124506707|ref|XP_001351951.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7]
 gi|23504979|emb|CAD51762.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7]
          Length = 241

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V +PDPILRR S  +   + ++  ++  M ++MY + GIGL+A Q+ +  R++V + L 
Sbjct: 67  IVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALY 126

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +    +N  +FINP I+  S       EGCLS P     V+R + +++ Y D N    + 
Sbjct: 127 EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 186

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ +   QHE DHLNG LFID ++++ +  +  K+++L++
Sbjct: 187 ILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 229


>gi|72162127|ref|YP_289784.1| peptide deformylase [Thermobifida fusca YX]
 gi|71915859|gb|AAZ55761.1| peptide deformylase [Thermobifida fusca YX]
          Length = 221

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 8   IFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +  + +L R +  + +    ++  LID+M   MY  +G+GLAA Q+GV  R+ V D  D 
Sbjct: 42  VVGEDVLHRRNADVTEFGTPELHTLIDDMFRTMYVAEGVGLAANQVGVDLRVFVYDCPDD 101

Query: 67  AHRKNPMVFINPKIITFSDDFS---VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
              ++    INP + T+  +     V  EGCLS+P   A++ R+ +  V   D +     
Sbjct: 102 DGVRHVGHVINPVLETWGAEEEGLVVENEGCLSVPGPHAELARAPYARVTGFDRDGNPVT 161

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +   G  A CLQHE DH  G L+ID LS+ +R  + K M ++
Sbjct: 162 VEGSGYFARCLQHETDHTLGRLYIDRLSKRERKKVLKAMEEM 203


>gi|189466358|ref|ZP_03015143.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM
           17393]
 gi|189434622|gb|EDV03607.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM
           17393]
          Length = 184

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M + +G+GLAA Q+G+  R+VV+
Sbjct: 1   MILPIYVYGQPVLRKVAEDIAPDYPNLKELIANMFETMDNAEGVGLAAPQVGLPVRVVVV 60

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           DL         ++     +INP I+  S +    +EGCLS+P     VKR   I V YMD
Sbjct: 61  DLDVLSEDYPEYKGFRKAYINPHILEVSGEEVSMEEGCLSLPGIHEAVKRGNKIHVTYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +        +G LA  +QHE DHL G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 EDMVEHDEIVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173


>gi|302554040|ref|ZP_07306382.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302471658|gb|EFL34751.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 216

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +     +   L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTDFGDEFQQLVADMFASQRTAEGVGLAANQIGVDAKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    +        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHTGVVCNPKLVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|91216549|ref|ZP_01253515.1| peptide deformylase [Psychroflexus torquis ATCC 700755]
 gi|91185343|gb|EAS71720.1| peptide deformylase [Psychroflexus torquis ATCC 700755]
          Length = 196

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+L++ +  I K +  I  L++NM E MY+  G+GLAA QIG+  RL ++
Sbjct: 1   MILPIAAYGSPVLKKKAEDISKDHPKIDELLENMFETMYNASGVGLAAPQIGLSIRLFIV 60

Query: 62  DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D +  +                  VFINP+II  +     + EGCLSIPD   D+ R   
Sbjct: 61  DAKPFSEDESLSELEKNELEAFKRVFINPQIIEENGIEWDFNEGCLSIPDVHEDIFRKPE 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           ITV Y+D N   Q     GL A  +QHE DH+ G+LF D +S LK+ +I  K++ + + +
Sbjct: 121 ITVEYLDENFTPQKEKLSGLAARVVQHEYDHIEGVLFTDRISSLKKRLIKNKLTNISKGK 180


>gi|158320460|ref|YP_001512967.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
 gi|158140659|gb|ABW18971.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
          Length = 147

 Score =  186 bits (474), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 91/152 (59%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR++S+P++ I+  I+ L+D+M+E MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRKEEDPVLRKISKPVDTIDDKIITLLDDMIETMYDADGVGLAAPQVGILKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II   D      EGCLS+P    +V R   + V+  D    
Sbjct: 61  IDIGE-----GVIELINPEII-AEDGVQCDNEGCLSLPGITEEVARPRTVKVKGFDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+  + LLA  L HE+DHLNGILFID   +
Sbjct: 115 EMIVEGEELLARALCHEIDHLNGILFIDRAEK 146


>gi|254375239|ref|ZP_04990719.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548]
 gi|151572957|gb|EDN38611.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548]
          Length = 174

 Score =  186 bits (474), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 5/170 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++   D+   +NP +               + +EGCLS P   A V R+  + ++ ++  
Sbjct: 63  IM--YDNLEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 121 GDEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170


>gi|117621144|ref|YP_856896.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562551|gb|ABK39499.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 166

 Score =  186 bits (474), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L   +  +E I + +  LID+MLE +Y+T +GIGLAA Q+G    +V
Sbjct: 1   MAMLDILTVPDPRLGIKAEQVEDI-AAVQGLIDDMLETLYATDNGIGLAATQVGRKEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL +   R  P+V INP++ +   + ++ QEGCLS+PDY ADV+R   + V  +D + 
Sbjct: 60  IIDLSEK--RDQPLVLINPQVTS-GTEPALGQEGCLSVPDYYADVERYGSVVVSALDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               + +   LA  +QHE+DHL G +FID+LS LKR M  KK+ K ++
Sbjct: 117 VPITVKSSDFLAIVMQHEIDHLQGKVFIDYLSPLKRKMALKKVKKHLK 164


>gi|297195782|ref|ZP_06913180.1| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152947|gb|EDY66111.2| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 190

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 74/151 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +P+ +  DP+L +    +     D+  L++++   MY+  G+GLAA Q+GV  R+ V D
Sbjct: 13  VRPMSLLADPVLHKPCETVTDFGPDLGRLVEDLFATMYAAQGVGLAANQVGVGSRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V  +    +  
Sbjct: 73  CPDDEDVRHLGHVVNPRLVEADGVTVRGPEGCLSLPGLEAGTERFDRAVVEGVTWEGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +   G  A CLQHE DHL G+++ D L+  
Sbjct: 133 RVEGTGFFARCLQHECDHLEGLVYADRLTPW 163


>gi|262195424|ref|YP_003266633.1| peptide deformylase [Haliangium ochraceum DSM 14365]
 gi|262078771|gb|ACY14740.1| peptide deformylase [Haliangium ochraceum DSM 14365]
          Length = 175

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 100/166 (60%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V++PD  LR+ +R +E+++  + +L  N+++ MYS +G+G+AAVQIG   ++ +
Sbjct: 1   MAVLPIVVWPDARLRQETRRVEQVDDAVRDLYRNLVDTMYSLNGLGIAAVQIGDPTQMFI 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++  L        P+ FINP+++  S+D    +EGCLS P     V R A   VR +  +
Sbjct: 61  VEPALAGRDANDEPVAFINPEVVWTSEDSDKSEEGCLSFPGIYVQVDRPAKARVRALGID 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   + A+GL A CL HE DHL G L +D +  LKR MI +K+++
Sbjct: 121 GEIFEVEAEGLFARCLLHENDHLTGKLLVDFVGPLKRQMIRRKLNR 166


>gi|261839392|gb|ACX99157.1| peptide deformylase [Helicobacter pylori 52]
          Length = 175

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ I   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEIVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169


>gi|254477587|ref|ZP_05090973.1| peptide deformylase [Ruegeria sp. R11]
 gi|214031830|gb|EEB72665.1| peptide deformylase [Ruegeria sp. R11]
          Length = 165

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  D+  L  +M++ M +  G+GLAA QIGVL RL V
Sbjct: 1   MTVRTCLPWPDKHLRSRAVEVSEITDDVRALWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D    + R   +   NP+I+  S     + E   ++P   A +KR   +TVRYMD N +
Sbjct: 61  VD--GSSERGRAVRMANPEILHASVALREHDEASPNLPGVSAKIKRPRAVTVRYMDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                  G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K  KL 
Sbjct: 119 TVERDFVGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLLRKAKKLT 164


>gi|77464453|ref|YP_353957.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|77388871|gb|ABA80056.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1]
          Length = 163

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +   P E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGRMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++      EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q  +  G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|85700127|gb|ABC74513.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKWIGT-GGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|15645412|ref|NP_207586.1| peptide deformylase [Helicobacter pylori 26695]
 gi|3023623|sp|P56419|DEF_HELPY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2313922|gb|AAD07841.1| polypeptide deformylase (def) [Helicobacter pylori 26695]
          Length = 174

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|21674275|ref|NP_662340.1| polypeptide deformylase [Chlorobium tepidum TLS]
 gi|25452909|sp|Q8KCG7|DEF_CHLTE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21647445|gb|AAM72682.1| peptide deformylase [Chlorobium tepidum TLS]
          Length = 187

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + DP+L   ++P++ ++S I  LI  M + MY   GIGLAA Q+G   RLVV+
Sbjct: 1   MILPINTYSDPVLAMKAKPLKGVDSAIEELIAEMFDTMYKAPGIGLAAPQVGHSLRLVVV 60

Query: 62  DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D+       +  PMV INP+I+      S+ +EGCLS+P    +V R + IT+ Y D   
Sbjct: 61  DISTIKEYADFKPMVVINPRIVAVRG-RSLMEEGCLSVPGIAGNVVRPSAITLHYRDEKF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +        ++A  LQHE+DHL+G LF+D + +  R  I K++  + + R
Sbjct: 120 EEHTADFHSMMARVLQHEIDHLDGTLFVDRMDKRDRRKIQKELDAIAEGR 169


>gi|15965155|ref|NP_385508.1| peptide deformylase [Sinorhizobium meliloti 1021]
 gi|307309167|ref|ZP_07588838.1| peptide deformylase [Sinorhizobium meliloti BL225C]
 gi|23396568|sp|Q92QD0|DEFL_RHIME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|15074335|emb|CAC45981.1| Putative polypeptide deformylase [Sinorhizobium meliloti 1021]
 gi|306900313|gb|EFN30929.1| peptide deformylase [Sinorhizobium meliloti BL225C]
          Length = 172

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 96/169 (56%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP P+L   +  I + +  +  L D++++ M +  GIG+ A  IG+L RL V
Sbjct: 1   MAVRPIIRFPSPLLTTSAERIGRFDGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I++        P  F+NP+I+  S + + + EG +S+P    +V+R   + V +   + +
Sbjct: 61  IEVDPQTG---PRSFVNPEIVWQSSETAWHTEGSVSMPGVAEEVERPVRVRVSFQTLDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   A+GL+A CLQHE+D LNGI +I  LSRLKR+   K+  K  +  
Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKFNRAE 166


>gi|311113846|ref|YP_003985068.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
 gi|310945340|gb|ADP41634.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
          Length = 190

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR    PI   + ++  LID+ML+ MY  +G+GLA  QIG+  ++  
Sbjct: 1   MTILSIRTVGDPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          INP +     +     EGCLS+P  ++D  R  +  VR +D   +
Sbjct: 61  FGGIDGRE----GYIINPVL-ETGTEPQEGGEGCLSVPGIKSDTPRMNWARVRGVDKTGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++  +GL A  LQHE DHL+G LFID L    R  + + +  
Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRKRVMRTIRA 159


>gi|260465452|ref|ZP_05812642.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
 gi|259029756|gb|EEW31042.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
          Length = 166

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP+P+LR V+ P++  +SD+  L  ++++ M++  GIG+    IG+L RLVV
Sbjct: 1   MAVRPIIRFPNPLLRAVAEPVKLFDSDLHGLAGDLVDTMHAAPGIGITGPHIGILRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I L   A    P +++NP I+  S +   + EG +S+P    D++R A I VRY D +  
Sbjct: 61  IQLPSAAK---PGIYVNPSIVHASTEMIRHAEGSVSMPGVTEDIERHARIIVRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   ADGLLA C QHE+D L+G+ +   L+RLKRD + K+  KL++
Sbjct: 118 EQFENADGLLAVCHQHEIDQLDGLFWTHRLTRLKRDRLVKRYGKLMR 164


>gi|253987938|ref|YP_003039294.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779388|emb|CAQ82549.1| peptide deformylase 2 [Photorhabdus asymbiotica]
          Length = 168

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 97/160 (60%), Gaps = 5/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PD  LR+    +  +   I  LID+ML+ MYST +GIGLAA Q+G    ++
Sbjct: 1   MATLEILTIPDERLRQKCVEVTNV-EAIQGLIDDMLDTMYSTDNGIGLAAPQVGRKEAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +ID+   A R  P++ +NPKI+   D   + QEGCLS+P Y ADV+R   + V  ++ + 
Sbjct: 60  IIDIS--ATRDEPLILVNPKIVEK-DRSVIGQEGCLSVPGYYADVERFEKVKVEALNRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           +   + ++  LA  +QHE+DHL+G +FID+LS LKR M  
Sbjct: 117 ETITVESEDFLAIVMQHEIDHLHGKIFIDYLSPLKRQMAL 156


>gi|23500203|ref|NP_699643.1| peptide deformylase [Brucella suis 1330]
 gi|83269660|ref|YP_418951.1| peptide deformylase [Brucella melitensis biovar Abortus 2308]
 gi|161511169|ref|NP_541790.2| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|161620522|ref|YP_001594408.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163844620|ref|YP_001622275.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|189022926|ref|YP_001932667.1| peptide deformylase [Brucella abortus S19]
 gi|225686258|ref|YP_002734230.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|254691174|ref|ZP_05154428.1| peptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|254698957|ref|ZP_05160785.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254699710|ref|ZP_05161538.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|254702846|ref|ZP_05164674.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|254706033|ref|ZP_05167861.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|254711667|ref|ZP_05173478.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|254732404|ref|ZP_05190982.1| peptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|256015237|ref|YP_003105246.1| peptide deformylase [Brucella microti CCM 4915]
 gi|256029699|ref|ZP_05443313.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|256043351|ref|ZP_05446286.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256059334|ref|ZP_05449536.1| peptide deformylase [Brucella neotomae 5K33]
 gi|256111642|ref|ZP_05452632.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|256157852|ref|ZP_05455770.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|256253186|ref|ZP_05458722.1| peptide deformylase [Brucella ceti B1/94]
 gi|256256360|ref|ZP_05461896.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|256262606|ref|ZP_05465138.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544911|ref|ZP_05820732.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260564557|ref|ZP_05835042.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260568243|ref|ZP_05838712.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260756775|ref|ZP_05869123.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str.
           870]
 gi|260760206|ref|ZP_05872554.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str.
           292]
 gi|260763444|ref|ZP_05875776.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882591|ref|ZP_05894205.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68]
 gi|261220293|ref|ZP_05934574.1| peptide deformylase-like protein [Brucella ceti B1/94]
 gi|261313474|ref|ZP_05952671.1| peptide deformylase-like protein [Brucella pinnipedialis
           M163/99/10]
 gi|261319290|ref|ZP_05958487.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94]
 gi|261323293|ref|ZP_05962490.1| peptide deformylase-like protein [Brucella neotomae 5K33]
 gi|261750174|ref|ZP_05993883.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513]
 gi|261753446|ref|ZP_05997155.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686]
 gi|265986710|ref|ZP_06099267.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1]
 gi|265989773|ref|ZP_06102330.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993119|ref|ZP_06105676.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996360|ref|ZP_06108917.1| peptide deformylase-like protein [Brucella ceti M490/95/1]
 gi|54036957|sp|P63920|DEFL_BRUSU RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|54040933|sp|P63919|DEFL_BRUME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|23463805|gb|AAN33648.1| polypeptide deformylase [Brucella suis 1330]
 gi|82939934|emb|CAJ12948.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus
           2308]
 gi|161337333|gb|ABX63637.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163675343|gb|ABY39453.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|189021500|gb|ACD74221.1| Formylmethionine deformylase [Brucella abortus S19]
 gi|225642363|gb|ACO02276.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|255997897|gb|ACU49584.1| peptide deformylase [Brucella microti CCM 4915]
 gi|260098182|gb|EEW82056.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260152200|gb|EEW87293.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260154908|gb|EEW89989.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260670524|gb|EEX57464.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str.
           292]
 gi|260673865|gb|EEX60686.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676883|gb|EEX63704.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str.
           870]
 gi|260872119|gb|EEX79188.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68]
 gi|260918877|gb|EEX85530.1| peptide deformylase-like protein [Brucella ceti B1/94]
 gi|261298513|gb|EEY02010.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94]
 gi|261299273|gb|EEY02770.1| peptide deformylase-like protein [Brucella neotomae 5K33]
 gi|261302500|gb|EEY05997.1| peptide deformylase-like protein [Brucella pinnipedialis
           M163/99/10]
 gi|261739927|gb|EEY27853.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513]
 gi|261743199|gb|EEY31125.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686]
 gi|262550657|gb|EEZ06818.1| peptide deformylase-like protein [Brucella ceti M490/95/1]
 gi|262763989|gb|EEZ10021.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000442|gb|EEZ13132.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092392|gb|EEZ16645.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264658907|gb|EEZ29168.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1]
          Length = 164

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRAAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|187935113|ref|YP_001885413.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
 gi|187723266|gb|ACD24487.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
          Length = 147

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 92/152 (60%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+  R +EKI+  ++ LI +MLE MY  DG+GLAA Q+G+L RL +
Sbjct: 1   MALRNIRKYGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +      P+VFINP+I+   D   V +EGCLS+P     V R  ++  R ++   +
Sbjct: 61  VDIGE-----GPLVFINPEILDT-DGKQVDEEGCLSLPGKTEPVMRPNYVKARALNEKWE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A+ LLA  + HE DHLNG LFID  ++
Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRTTK 146


>gi|153809825|ref|ZP_01962493.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174]
 gi|149834003|gb|EDM89083.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174]
          Length = 156

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR++S+P++++   I+ LID+ML+ MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRVIRTEEDPVLRKISKPVKEVTPKIITLIDDMLDTMYEAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S +     EGCLS+P     V R  ++ V+ MD    
Sbjct: 61  IDVGE-----GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAMDEEMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I     LLA    HE+DHL+G ++ D + 
Sbjct: 115 EVIYEGTELLARAFCHEIDHLDGKMYTDLVE 145


>gi|57168634|ref|ZP_00367766.1| polypeptide deformylase [Campylobacter coli RM2228]
 gi|305432738|ref|ZP_07401898.1| peptide deformylase [Campylobacter coli JV20]
 gi|57019915|gb|EAL56595.1| polypeptide deformylase [Campylobacter coli RM2228]
 gi|304444247|gb|EFM36900.1| peptide deformylase [Campylobacter coli JV20]
          Length = 175

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 98/164 (59%), Gaps = 3/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+  L   S P+++ + ++  L+D+M + M ++ G+GLAA+Q+ +  R +++
Sbjct: 1   MVRKIITYPNSRLFLNSEPVKQFDQELHTLLDDMYDTMIASQGVGLAAIQVDIPLRALIV 60

Query: 62  DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ D      +++ +  INP+II   ++     EGCLS+PD+  +V+R   I ++Y D  
Sbjct: 61  NILDENEEQKKEDLLEIINPQIIPLGEEKITCTEGCLSVPDFFEEVERYNHILLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
              + + A G LA  +QHE DHLNG LFI+ +S LKR    K+ 
Sbjct: 121 GNFKELEAQGFLAVAIQHENDHLNGHLFIEKISFLKRQKFDKEF 164


>gi|225022087|ref|ZP_03711279.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680576|ref|ZP_07403384.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
 gi|224945020|gb|EEG26229.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660107|gb|EFM49606.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
          Length = 201

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI+  P+L + +  + +    +  LID+M E M    G+GLAA QIGV  R+ V
Sbjct: 7   MTVRPIVIYGTPVLHQPTAIVTEPIDTLRELIDDMFETMEKAHGVGLAANQIGVGKRIFV 66

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSV------YQEGCLSIPDYRADVKRSAFITVRY 114
            +  D     +   FINP + T      +        EGCLS+P       R+ +  V  
Sbjct: 67  YNCPDDEGVIHRGCFINPVLETSDIPEGMPAVDGSDDEGCLSLPGLSFPTGRATWAKVTG 126

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           ++ N +       G LA C QHE+ HL+G ++ D L    +    K + +
Sbjct: 127 LNENGEEVSEEGTGFLARCFQHEVGHLDGFVYADVLQGRWKRAGKKAIKR 176


>gi|284047692|ref|YP_003398031.1| peptide deformylase [Acidaminococcus fermentans DSM 20731]
 gi|283951913|gb|ADB46716.1| peptide deformylase [Acidaminococcus fermentans DSM 20731]
          Length = 158

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    PILR  + P+ + +  +  L+ +M E MY+ +G GLAA QIG+  RLVV
Sbjct: 1   MAIYDIVKVGAPILREKAVPVTRFDKKLARLLKDMAETMYAANGCGLAAPQIGLSKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D A  +    F+NP +     + +V  EGCLS+PDY  +VKR+A ITV + D    
Sbjct: 61  IDAGDGAGIRE---FVNPVLTDPEGE-AVDSEGCLSVPDYEGEVKRAARITVHFQDRKGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
           H  + ADGLLA  LQHE DHL G+LFID 
Sbjct: 117 HYRLTADGLLARALQHECDHLEGVLFIDK 145


>gi|138894692|ref|YP_001125145.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2]
 gi|196247688|ref|ZP_03146390.1| peptide deformylase [Geobacillus sp. G11MC16]
 gi|134266205|gb|ABO66400.1| Polypeptide deformylase [Geobacillus thermodenitrificans NG80-2]
 gi|196212472|gb|EDY07229.1| peptide deformylase [Geobacillus sp. G11MC16]
          Length = 157

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +P P+L +    +   +  +  L+D+M E M + DG+GLAA Q+G+  ++ V
Sbjct: 1   MSVLPIVTYPAPVLEQPCARVTVFDRQLGRLLDDMYETMIAADGVGLAAPQVGIAKQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R      INP II    +  +  EGCLS P    +V R+ ++ VR  +   +
Sbjct: 61  VDIGDEHGRIE---LINPVIIEARGE-QIDVEGCLSFPGLFGEVPRANYVKVRAQNRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A G LA  LQHE+DHL+G+LF   + R
Sbjct: 117 LFTLSATGFLARALQHEIDHLHGVLFTSKVIR 148


>gi|300726436|ref|ZP_07059884.1| peptide deformylase [Prevotella bryantii B14]
 gi|299776284|gb|EFI72846.1| peptide deformylase [Prevotella bryantii B14]
          Length = 185

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 99/174 (56%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI +M + + +++G+GLAA QIG   RLVVI
Sbjct: 1   MILPIYVYGQPVLRKVASDITPDYPELKQLIQDMFQTLDNSNGVGLAAPQIGKAIRLVVI 60

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYM 115
           DL     +   +     VFIN  I+ + D      +EGCLSIP    +V R   I V+YM
Sbjct: 61  DLDILKDEFPEYEGFRKVFINAHILEYDDTQESRMEEGCLSIPGLSENVVRPTRIHVKYM 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + +G  A  +QHE DHL GI+++D ++ L+++MI  K+  +++ +
Sbjct: 121 DENFVEHDEWVEGYKARVMQHEFDHLEGIMYVDKVNALRKNMIGGKLKNIMKGK 174


>gi|15835247|ref|NP_297006.1| peptide deformylase [Chlamydia muridarum Nigg]
 gi|270285419|ref|ZP_06194813.1| peptide deformylase [Chlamydia muridarum Nigg]
 gi|270289433|ref|ZP_06195735.1| peptide deformylase [Chlamydia muridarum Weiss]
 gi|301336816|ref|ZP_07225018.1| peptide deformylase [Chlamydia muridarum MopnTet14]
 gi|13878461|sp|Q9PK41|DEF_CHLMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|7190671|gb|AAF39461.1| polypeptide deformylase [Chlamydia muridarum Nigg]
          Length = 181

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+V+ PI++I  ++  L+ +M E M    G+GLAA Q+G    L ++
Sbjct: 1   MIRDLEYYDSPILRKVAAPIDEITDELRQLVLDMSETMTFYKGVGLAAPQVGHSVALFIM 60

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P VFINP I   S+      EGCLSIP  R +V R   ITV   
Sbjct: 61  GVEKELDDGELIFCDFPKVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVTAK 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167
           + + Q   +  +G LA  + HE DHL+G+L+ID +S + K       + K+ +
Sbjct: 121 NLDGQPFSMTLEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173


>gi|297202274|ref|ZP_06919671.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
 gi|197710208|gb|EDY54242.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
          Length = 216

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + +   ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTEFGEELDQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D QD   R++  V  NPK++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCQDDEGRRHVGVVCNPKLVDLPADRRQLDESNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|313893407|ref|ZP_07826979.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442048|gb|EFR60468.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 162

 Score =  186 bits (473), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    P+L++V+ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLDVVKAGHPVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVSKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D Q  +     +  INP+I T ++   V  EGCLS+P Y  DV+R   ITV+ +D + +
Sbjct: 61  VDDQVGSG---LIALINPEI-THAEGSQVGPEGCLSVPGYYGDVERFNKITVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I A+G LA   QHE+DHL G LFI+  + L+
Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150


>gi|301168570|emb|CBW28160.1| peptide deformylase [Bacteriovorax marinus SJ]
          Length = 197

 Score =  186 bits (473), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 65/160 (40%), Positives = 90/160 (56%), Gaps = 15/160 (9%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +P P+L++V+ P+ + + D+  L  +ML  MY   GIGLAA QIG   RL V+D+  
Sbjct: 19  IFTYPAPVLKKVAEPVTEFDDDLRALCKDMLFTMYHAPGIGLAAPQIGKSIRLFVMDIDY 78

Query: 66  HAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
                              NPM+FINP I     +  +Y+EGCLS+P    +VKR+  IT
Sbjct: 79  DREEVTRADGSSEHVLSNFNPMIFINPVISNKHGEI-LYEEGCLSVPGIYEEVKRAKTIT 137

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V Y D   +   I AD LL+ CLQHE DHL GI+F++ LS
Sbjct: 138 VDYQDMWGEKHSIDADELLSICLQHENDHLEGIVFLERLS 177


>gi|239978163|ref|ZP_04700687.1| polypeptide deformylase [Streptomyces albus J1074]
          Length = 183

 Score =  186 bits (473), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 75/146 (51%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +      +  L++++   MY+  G+GLAA QIGV  R+ V D
Sbjct: 13  VRPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D   R++    +NP+++          EGCLS+P   A  +R     V  +D   + +
Sbjct: 73  CPDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPR 132

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
            ++  G  A CLQHE DHL+G L++D
Sbjct: 133 TVHGTGFFARCLQHESDHLDGTLYVD 158


>gi|307150582|ref|YP_003885966.1| peptide deformylase [Cyanothece sp. PCC 7822]
 gi|306980810|gb|ADN12691.1| peptide deformylase [Cyanothece sp. PCC 7822]
          Length = 187

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 95/161 (59%), Gaps = 2/161 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ ++ I K++  +  L   ML+ MYS +GIGLAA Q+ V  +L+V+D +
Sbjct: 18  EIHYLGDRVLRQPAKRIAKVDDAVRQLAKEMLQTMYSANGIGLAAPQVAVNKQLLVVDCE 77

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INP+I  FS D   ++EGCLSIP    DV R   I V + D + + + +
Sbjct: 78  PDNATNQPIILINPQITHFSRDLCQFEEGCLSIPGVYLDVVRPKAIEVSFKDESGRPKKL 137

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            A GLLA  +QHE+DHLNG++F+D +       +T+++ K 
Sbjct: 138 KATGLLARVIQHEMDHLNGVMFVDRVGNN--LALTEELKKH 176


>gi|20807950|ref|NP_623121.1| peptide deformylase [Thermoanaerobacter tengcongensis MB4]
 gi|23396539|sp|Q8R9T0|DEF_THETN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|20516520|gb|AAM24725.1| N-formylmethionyl-tRNA deformylase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 159

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 95/153 (62%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR+ ++P+ +INS I+ ++++M E MY  DG+GLAA Q+G+L RLVV
Sbjct: 1   MAIRYIRKIGDPVLRKKAKPVTEINSHIITILEDMAETMYLNDGVGLAANQVGILRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+I+ + +   +  EGCLSIP    +VKR   + VRY+D    
Sbjct: 61  IDVGE-----GLLELINPEIV-YEEGEQIGPEGCLSIPGVFGEVKRPQKVKVRYLDREGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHL G+LF+D + R 
Sbjct: 115 VKEIVGEDLLARALCHEIDHLEGVLFVDKVIRF 147


>gi|259417291|ref|ZP_05741210.1| peptide deformylase [Silicibacter sp. TrichCH4B]
 gi|259346197|gb|EEW58011.1| peptide deformylase [Silicibacter sp. TrichCH4B]
          Length = 165

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +I  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTTRTCLPWPDKRLRTAATEVSEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S +   ++E   ++P   A +KR   +TVR+++ +  
Sbjct: 61  VD--GSTERGRAVRLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFLNEDGV 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  G+ AT +QH++DHLNG ++ D+LS++KRDM+ KK  K  +
Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLIKKARKFAR 165


>gi|154149172|ref|YP_001405640.1| peptide deformylase [Campylobacter hominis ATCC BAA-381]
 gi|153805181|gb|ABS52188.1| peptide deformylase [Campylobacter hominis ATCC BAA-381]
          Length = 171

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 102/171 (59%), Gaps = 4/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L + S+ +EK + ++   +D+M E M S  GIGLAA+Q+G   R +VI
Sbjct: 1   MILEILTYPNKKLYQKSKKVEKFDDELGKFLDDMYETMISKKGIGLAAIQVGRPIRAIVI 60

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              D  D   ++N +  INP+I+T   +  +YQEGCLS+P Y  DVKR+ F+ + + +  
Sbjct: 61  NLVDENDEQKKENLLEIINPEILTQEGEI-IYQEGCLSVPGYYEDVKRAEFVKLGFQNRF 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + + +    LLA C+QHE+DHL+G LFI+ +   KR    K+  K ++ +
Sbjct: 120 GETKEMEVQELLAVCIQHEIDHLDGHLFIEKIGYNKRKKFDKEFKKHLKEK 170


>gi|308182949|ref|YP_003927076.1| peptide deformylase [Helicobacter pylori PeCan4]
 gi|308065134|gb|ADO07026.1| peptide deformylase [Helicobacter pylori PeCan4]
          Length = 175

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKG-TIIYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169


>gi|150020729|ref|YP_001306083.1| peptide deformylase [Thermosipho melanesiensis BI429]
 gi|149793250|gb|ABR30698.1| peptide deformylase [Thermosipho melanesiensis BI429]
          Length = 165

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 99/164 (60%), Gaps = 6/164 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + ++ DPILR+ ++ ++     +  + ++ML+ MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 3   IRLYGDPILRKSAKAVKDF-KYLQEIKEDMLKTMYLEDGVGLAAPQVGLSLRFFVMD--- 58

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  +NP+II  S++  + +EGCLS+P    +V+R  ++ +++ D   + Q   
Sbjct: 59  --DGSGPLFIVNPEIIAHSEEKEIGEEGCLSLPGIFENVERYKWVKLKFQDEYGKVQTRL 116

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +G  A  +QHE DHL+GILFIDHL    +  +  ++SK++++R
Sbjct: 117 FEGYSARIVQHERDHLDGILFIDHLPNAVKRRLAPELSKIMRMR 160


>gi|67459122|ref|YP_246746.1| polypeptide deformylase [Rickettsia felis URRWXCal2]
 gi|67004655|gb|AAY61581.1| Polypeptide deformylase [Rickettsia felis URRWXCal2]
          Length = 183

 Score =  186 bits (473), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ +     +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQTLNIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P+VFINP+I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  N-NKSSPIVFINPEITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELE 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG  F+D++S+LKRD + KKM K ++L
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYVSKLKRDTLLKKMLKHIKL 171


>gi|160945220|ref|ZP_02092446.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442951|gb|EDP19956.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105555|emb|CBL03099.1| peptide deformylase [Faecalibacterium prausnitzii SL3/3]
          Length = 178

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G++ RL V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMMRRLFV 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P       + F+NP+I+  S++     EGCLS P +   V R   + VR
Sbjct: 61  VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPVAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             D N +   + ADGLL  C+QHE DHL+GI  ++
Sbjct: 121 AQDRNGEWFELEADGLLGRCIQHENDHLDGITIME 155


>gi|208434704|ref|YP_002266370.1| polypeptide deformylase [Helicobacter pylori G27]
 gi|238058212|sp|B5Z7F5|DEF_HELPG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|208432633|gb|ACI27504.1| polypeptide deformylase [Helicobacter pylori G27]
          Length = 174

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|331091587|ref|ZP_08340423.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403614|gb|EGG83170.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 157

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +  + ++ I    + LI++M + MY   G+GLAA Q+G+L R+V 
Sbjct: 1   MAIREIRKIGDEVLTKKCKEVKTITPRTVELIEDMFDTMYDEMGVGLAASQVGILKRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P++ INP+II  S +     EGCLS+P     V R  +  VR  D + Q
Sbjct: 61  IDVGE-----GPILLINPEIIETSGE-QTGDEGCLSVPGKAGQVTRPFYAKVRACDIDMQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  +GLLA    HE+DHL+G L++D + 
Sbjct: 115 PFEIEGEGLLARAFCHEIDHLDGHLYVDKVE 145


>gi|194368702|pdb|3CPM|A Chain A, Plant Peptide Deformylase Pdf1b Crystal Structure
          Length = 193

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 90/162 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 19  IVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I 
Sbjct: 79  EPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 138

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              L A   QHE DHL G+LF D ++    D I +++  L +
Sbjct: 139 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 180


>gi|88608268|ref|YP_506280.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama]
 gi|123763725|sp|Q2GE16|DEF_NEOSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|88600437|gb|ABD45905.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama]
          Length = 186

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 108/180 (60%), Gaps = 13/180 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L+I PDP+L  VS  +  ++ +    +D+MLE MY   GIGLAAVQ+GVL R++V
Sbjct: 1   MALLALIIEPDPLLHEVSEAVAGLSDEKRVFLDDMLETMYHCGGIGLAAVQVGVLERIIV 60

Query: 61  IDLQ-------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +D+               +     P  F+NP+II FS +     EGCLS+P+   ++ R 
Sbjct: 61  VDVPVGKEWHSSPLNHVGYKSSGGPYYFVNPEIIEFSQNLVPADEGCLSLPEQHYEIIRP 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + V+Y++ + +  ++ A+G LA C+QHE+DHLNG L++ HLS+LK D+  KK +++ +
Sbjct: 121 DAVVVKYLNYDGEECLLKANGWLARCIQHEMDHLNGRLYVSHLSKLKHDLAIKKAAEIKK 180


>gi|114766696|ref|ZP_01445635.1| peptide deformylase [Pelagibaca bermudensis HTCC2601]
 gi|114541086|gb|EAU44141.1| peptide deformylase [Roseovarius sp. HTCC2601]
          Length = 164

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  + P+E I  +I  +  +M++ M +  G+GL A QIGV+ RL V
Sbjct: 1   MTARPCIPWPDKRLRSPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P+   NP+I+  S     + E   ++P   A ++R   +TVR+++   +
Sbjct: 61  VDASE--ERGQPVRMANPEILHASVKLRSHDEASPNLPGVWAKIERPRAVTVRFLNEAGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +     GL AT +QH++DHLNG ++ DHLS++KRD++ ++  K
Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGKMYFDHLSKVKRDILLRRAKK 162


>gi|315608229|ref|ZP_07883220.1| peptide deformylase [Prevotella buccae ATCC 33574]
 gi|315250099|gb|EFU30097.1| peptide deformylase [Prevotella buccae ATCC 33574]
          Length = 181

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-- 65
           I+  P+LR+V+  I      +  LI +M E + +++G+GLAA QIG   R+ VIDL    
Sbjct: 2   IYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVIDLDVLS 61

Query: 66  ---HAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                ++     +INP I+ F +       +EGCLSIP    +V R   I V+Y D +  
Sbjct: 62  DDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKYRDTDFV 121

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               + +G LA  +QHE DHL+G +F+D +S L++ +I  K+  +++ +
Sbjct: 122 EHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILKGK 170


>gi|254465693|ref|ZP_05079104.1| peptide deformylase [Rhodobacterales bacterium Y4I]
 gi|206686601|gb|EDZ47083.1| peptide deformylase [Rhodobacterales bacterium Y4I]
          Length = 165

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  ++  + ++M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTVRTCLPWPDKRLRTKAEEVTEITDEVREIWNDMVDTMEAMPGVGLAANQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D    A R   +   NP+I+  S +   + E   ++P   A +KR   +TVRY++    
Sbjct: 61  VD--GSAERGRAVKLANPEILHASIELREHDEASPNLPGVSAKIKRPRAVTVRYLNEQGM 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                  G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  KL 
Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLIRKAKKLT 164


>gi|308184577|ref|YP_003928710.1| peptide deformylase [Helicobacter pylori SJM180]
 gi|308060497|gb|ADO02393.1| peptide deformylase [Helicobacter pylori SJM180]
          Length = 174

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIEAGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|282866652|ref|ZP_06275694.1| peptide deformylase [Streptomyces sp. ACTE]
 gi|282558554|gb|EFB64114.1| peptide deformylase [Streptomyces sp. ACTE]
          Length = 212

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  R + + + ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECRTVTEFDDELGRLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++     NP +   + +        EGCLS+P   A++ R  +  VR  D  
Sbjct: 96  DCLDDDGVRHVGAVCNPVLEELAPERRNLDASNEGCLSVPTAYAELARPDYAVVRGQDAE 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    K+M +
Sbjct: 156 GNDVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMEE 201


>gi|254372091|ref|ZP_04987584.1| hypothetical protein FTCG_01232 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569822|gb|EDN35476.1| hypothetical protein FTCG_01232 [Francisella novicida GA99-3549]
          Length = 174

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 5/168 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILNYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++   D+   +NP +               + +EGCLS P   A V R+  + ++ ++  
Sbjct: 63  IM--YDNLEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+
Sbjct: 121 GDEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 168


>gi|260778893|ref|ZP_05887785.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605057|gb|EEX31352.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 168

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 105/168 (62%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  I   +  LID+MLE +Y+ ++GIGLAA Q+G    +V
Sbjct: 1   MAVLKILTAPDPKLKIKAEKVSDI-QSVQTLIDDMLETLYATSNGIGLAATQVGHREAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL +   R  P++ +NP+++    + ++ QEGCLS+PDY ADV+R   + V  +D + 
Sbjct: 60  IIDLSES--RDQPLILVNPEVVE-GKNRAMGQEGCLSVPDYYADVERYTSVVVEALDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   I +D  LA  +QHE+DHL G LFID+LS LK+ M  KK+ K ++
Sbjct: 117 EPVRIESDDFLAIVMQHEIDHLAGNLFIDYLSPLKQRMALKKVKKHIK 164


>gi|225028093|ref|ZP_03717285.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353]
 gi|224954563|gb|EEG35772.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353]
          Length = 158

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 96/161 (59%), Gaps = 5/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP L +V +P++KI   I  LI++M + MY   G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRKIRFIGDPCLNKVCKPVQKITPSIETLIEDMFDTMYEARGVGLAAPQVGILRRICV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    ++P++ INP+II  + +    +EGCLSIP   A V R+ ++ V+  D    
Sbjct: 61  IDVMD----EDPIILINPEIIETAGE-QTDEEGCLSIPGKCASVTRADYVKVKSFDMELN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
             II  +GL A  LQHE+DHL+G+L+ +  +    D+  ++
Sbjct: 116 PVIIEGEGLRARALQHEIDHLDGVLYGERANEPYHDVEEEE 156


>gi|85700143|gb|ABC74521.1| polypeptide deformylase [Helicobacter pylori]
 gi|85700145|gb|ABC74522.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|71907756|ref|YP_285343.1| formylmethionine deformylase [Dechloromonas aromatica RCB]
 gi|71847377|gb|AAZ46873.1| Formylmethionine deformylase [Dechloromonas aromatica RCB]
          Length = 204

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  +P++   +P+L  V++ + +   S++  LI++M + M +  G+GLAA QIG+  ++V
Sbjct: 29  MAARPILRMGEPLLFEVAKAVTEFGTSELRALIEDMFDSMEAAGGVGLAAPQIGIGLQMV 88

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +   +       A      V INP I    D+  +  EGCLS+P  R +V R   I  + 
Sbjct: 89  IFGFEKSERYPDAEAVPLTVLINPLITPVGDEEELGWEGCLSVPGLRGEVPRHTRIRYQG 148

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            D          +G  A  +QHE DHL G L+   +    R   T
Sbjct: 149 FDPEGTPIDRTVEGFHARVVQHECDHLIGRLYPSRIRDFSRFGFT 193


>gi|126733796|ref|ZP_01749543.1| Peptide deformylase [Roseobacter sp. CCS2]
 gi|126716662|gb|EBA13526.1| Peptide deformylase [Roseobacter sp. CCS2]
          Length = 153

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 78/147 (53%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+L   + P+E  ++ +  L+ +M E MY   G GLAA Q+GV  R+ V
Sbjct: 1   MAVRQIRFEGDPVLLETAAPVEAFDASLATLVRDMFETMYDAPGRGLAAPQVGVSRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         PM+F+NP+I   +++ ++  E CLSIPD   DV R  ++ +++ D +  
Sbjct: 61  VDTTWKEADPAPMIFVNPQITAHAEEEALGTEACLSIPDQSFDVSRPVWVALKWQDLDGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
                   + A C+ HE DHL G+L  
Sbjct: 121 WHEGRFTDVDAVCICHEFDHLEGLLIT 147


>gi|212635128|ref|YP_002311653.1| peptide deformylase [Shewanella piezotolerans WP3]
 gi|212556612|gb|ACJ29066.1| Formylmethionine deformylase [Shewanella piezotolerans WP3]
          Length = 163

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/165 (44%), Positives = 102/165 (61%), Gaps = 5/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  PD  L+R + P++ I++ +   ID+++E MY TD GIGLAA Q+G L+ ++
Sbjct: 1   MAVLDILTIPDVRLKRKAEPVKDIDA-VQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   R  PMV INP+I+    +F   +EGCLSIP YRA V R   + V  +D   
Sbjct: 60  VIDLSE--ERDQPMVLINPEIVETRGEFQ-GEEGCLSIPGYRAKVNRHEGVKVTALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q   I  D  LA  LQHE+DHL GI+F DHLS LK+ +  KK+ K
Sbjct: 117 QAFEIDTDEFLAIVLQHEMDHLKGIVFTDHLSMLKQQIALKKVKK 161


>gi|154485069|ref|ZP_02027517.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC
           27560]
 gi|149734022|gb|EDM50141.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC
           27560]
          Length = 165

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 1/151 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    +P LR++ +P++++N     LI +M + MY  +G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNIRELGEPCLRKICKPVKEVNLRTKILIGDMFDTMYEANGVGLAAPQVGILKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D      P VFINP+II   +      EGCLS+P     V R+  + V+  + N +
Sbjct: 61  VDCGDEEGNSVPYVFINPEIIDR-EGVQTGYEGCLSVPGKSGMVPRAQKVKVKAFNENME 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + A+GLLA C+ HE DHL+GI+++D + 
Sbjct: 120 EFEMEAEGLLARCILHENDHLDGIVYVDKVE 150


>gi|169831745|ref|YP_001717727.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C]
 gi|238688341|sp|B1I504|DEF_DESAP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169638589|gb|ACA60095.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C]
          Length = 154

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +PDPILR  +R + KI   I  L  N+++ M  + G+GLAA QIGV  R++V
Sbjct: 1   MAVFQIVQYPDPILREKAREVRKITPQIERLAVNLVDTMRRSGGVGLAAPQIGVSKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++       KNP+V INP+I+    D    +EGCLS+P     V+R   +TVR  +   +
Sbjct: 61  VE----DPEKNPIVLINPEIVRLEGDKETAEEGCLSVPGVWGQVERRMCLTVRGYNLEGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
                 +G  A   QHE+DHL+GI+F+D  + + +  
Sbjct: 117 QVAYLVEGFTARAFQHEIDHLDGIVFLDRATTIYKRK 153


>gi|282850137|ref|ZP_06259516.1| peptide deformylase [Veillonella parvula ATCC 17745]
 gi|282579630|gb|EFB85034.1| peptide deformylase [Veillonella parvula ATCC 17745]
          Length = 162

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 94/154 (61%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    P+L++V+ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLDVVKAGHPVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVAKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D Q  +     +  INP+I T ++   V  EGCLS+P Y  DV+R   +TV+ +D + +
Sbjct: 61  VDDQSGSG---LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFNKVTVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I A+G LA   QHE+DHL G LFI+  + L+
Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150


>gi|226304981|ref|YP_002764939.1| peptide deformylase [Rhodococcus erythropolis PR4]
 gi|226184096|dbj|BAH32200.1| peptide deformylase [Rhodococcus erythropolis PR4]
          Length = 199

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L + + P+ +  ++I  LI +M E M + +G+GLAA Q+GV  R+ V
Sbjct: 1   MAILPIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVSLRVFV 60

Query: 61  IDLQ--DHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            D    D +  +   V +NP + T        D     EGCLS+P  +    R+ +  V 
Sbjct: 61  YDCPGDDRSSERRRGVVVNPVLETSEIPQTMPDPEEDFEGCLSVPGEQFPTGRADWAKVT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D +     +   G  A  LQHE  HL+G L+ D L   +     KK+ K
Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVLIG-RNARAAKKIIK 170


>gi|329939688|ref|ZP_08288989.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
 gi|329301258|gb|EGG45153.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
          Length = 216

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTEFDEELAKLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    +        EGCLS+P     + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPKLVELPAERRRLDDNNEGCLSVPTAYVSLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205


>gi|302517742|ref|ZP_07270084.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|318080637|ref|ZP_07987969.1| polypeptide deformylase [Streptomyces sp. SA3_actF]
 gi|302426637|gb|EFK98452.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 183

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 77/167 (46%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL ++  P+L   +R        +  L++++   MY+  G+GLAA QIG   R+ V D
Sbjct: 13  VRPLSLYGAPVLTTPARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D   R++    +NP+++          EGCLS+P   A   R     V     +   +
Sbjct: 73  CPDDEDRRHLGHLVNPRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARR 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   G  A CLQHE DHL G L++D L   +   + ++  +    R
Sbjct: 133 RVEGTGFFARCLQHEYDHLEGGLYVDRLDARRHRKVLREAGRTGWGR 179


>gi|78044307|ref|YP_360316.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123743168|sp|Q3AC18|DEF_CARHZ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|77996422|gb|ABB15321.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 152

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 98/156 (62%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   DPIL+ +++PI++I  +I+ L++NM + MY+ +G+GLAA QIGV  R +V
Sbjct: 1   MAVYKVVEIGDPILKEIAKPIKEITPNIIKLLENMADTMYAYNGVGLAAPQIGVSKRAIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +       +  INP+II  S +     EGCLS+P  + +V R+  +TV+ ++   +
Sbjct: 61  VDVGE-----GLIELINPEIIEVSGE-EKDIEGCLSVPGVQGEVVRAKKVTVKGLNRYGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             +I A+GLLA   QHE+DHLNGILF++    + R 
Sbjct: 115 EIVIPAEGLLARAFQHEIDHLNGILFVEKADNIVRK 150


>gi|260578786|ref|ZP_05846693.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
 gi|258603084|gb|EEW16354.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
          Length = 168

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +  F DP+L+ V+ P++     ++    L+++MLE M    G+GLAA QIG+  R
Sbjct: 1   MTVLNMRYFGDPVLKTVADPVKPEQIQDAATRRLVEDMLETMDHYGGVGLAANQIGITRR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           + V D             INP      D+     EGCLSIPD   DV R+  + +R +  
Sbjct: 61  IFVFDCDGDRG-----HVINPTWEAVGDETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTV 115

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + +        L+A C+QHE DHL+G LFI HLS  +R    K++ +    +
Sbjct: 116 DGEQVDREVTDLMARCVQHETDHLDGTLFIQHLSAEQRREAMKQIRESEWFK 167


>gi|225452422|ref|XP_002276964.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296087647|emb|CBI34903.3| unnamed protein product [Vitis vinifera]
          Length = 275

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 87/166 (52%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +V +PDPILR  ++ I   + ++  L+D M +VMY TDGIGL+A Q+G+  +L+V 
Sbjct: 81  APLKIVEYPDPILRAKNKLISTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF 140

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +          +V +NP++  +S    ++ EGCLS P   ADV+R   + +   D     
Sbjct: 141 NPVGERGEGEEIVLVNPRVNKYSKKIVLFNEGCLSFPGIYADVERPESVKIDARDITGAR 200

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +I   GL A   QHE DHL G LF D ++    D I   +  L +
Sbjct: 201 FMINLSGLPARVFQHEFDHLQGTLFFDRMTEEVLDSIHANLQDLER 246


>gi|57242491|ref|ZP_00370429.1| polypeptide deformylase [Campylobacter upsaliensis RM3195]
 gi|57016776|gb|EAL53559.1| polypeptide deformylase [Campylobacter upsaliensis RM3195]
          Length = 174

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 101/164 (61%), Gaps = 3/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+  L   S P+EK + ++  L+D+M E M S+ G+GLAA+Q+ V  R+ ++
Sbjct: 1   MVRKIITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRIFIV 60

Query: 62  DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ D      +++ +  INP I   +D+  V  EGCLS+PD+  +V+R+  IT++Y D  
Sbjct: 61  NIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRNRKITLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            + + + A+  LA  +QHE DHL+G LFI+ L   KR+  +K+ 
Sbjct: 121 GKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKEF 164


>gi|319950533|ref|ZP_08024443.1| peptide deformylase [Dietzia cinnamea P4]
 gi|319435783|gb|EFV90993.1| peptide deformylase [Dietzia cinnamea P4]
          Length = 184

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +F DP+LR  + P+   +  +   + ++++ +   +G GLAA QIG+  R+ V
Sbjct: 1   MPVHPVRLFGDPVLRTAADPVTSFDDRLARTVTDLMDTVAHEEGAGLAAPQIGLSTRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          +NP+     ++ +   EGCLSIP      +R A +  R  D    
Sbjct: 61  YTCGGRRG-----HLVNPEWEAIGNETTEVNEGCLSIPGVSMPTERFARVRARGFDMKGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                A+G+LA  +QHE+DHL+G+LF+  L+  +R     ++ 
Sbjct: 116 PVSFEAEGILARAVQHEIDHLDGVLFLQRLTPERRRAAMAEIR 158


>gi|146297087|ref|YP_001180858.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410663|gb|ABP67667.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 164

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 102/166 (61%), Gaps = 7/166 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + + I+ D ILR+ S+ +EK +  + +L+D+M E MY  +GIGLAA Q+G+L R +V+D 
Sbjct: 2   RKIRIYEDEILRKKSKTVEKFDKRLHDLLDDMKETMYEANGIGLAAPQVGILKRAIVVDP 61

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D A     +  +NP+I  +S+   +  EGCLS+P+   +V+R   + VR  + + +   
Sbjct: 62  GDGA-----IELVNPQI-EYSEGSQIDIEGCLSVPNVWGEVERPKKVIVRGQNRHGEEIK 115

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL-KRDMITKKMSKLVQL 168
           I A+ LLA  L HE+DHL+GILFID + R    + + KK SK  ++
Sbjct: 116 IEAEDLLARALCHEIDHLDGILFIDKVIRFVTEEEVEKKRSKGQKM 161


>gi|118594097|ref|ZP_01551444.1| peptide deformylase [Methylophilales bacterium HTCC2181]
 gi|118439875|gb|EAV46502.1| peptide deformylase [Methylophilales bacterium HTCC2181]
          Length = 165

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 98/158 (62%), Gaps = 3/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++ +  ++     LI +M E MY ++GIGLAA Q+    R++V
Sbjct: 1   MAILTILTYPDPNLHKVAKRVINVDEVHKKLIKDMAETMYGSNGIGLAATQVNFHERIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   + + +  INP+II   +    Y+EGCLS+P +   V+R  +I V+ +D   +
Sbjct: 61  IDISD--DKNDLLTLINPEIIQK-EGKQEYEEGCLSVPGFYEAVERFDYIKVQSLDNRGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A GLL+ C+QHE+DHL G +F+++LS LK++ I
Sbjct: 118 SFEIEAHGLLSVCIQHEMDHLEGKVFVEYLSPLKQNRI 155


>gi|16330073|ref|NP_440801.1| peptide deformylase [Synechocystis sp. PCC 6803]
 gi|2499924|sp|P73441|DEF_SYNY3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1652560|dbj|BAA17481.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
          Length = 187

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/143 (39%), Positives = 87/143 (60%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I K++  I  L   ML+ MYS +GIGLAA Q+G+  +L+V+D +    
Sbjct: 22  LGDKVLRQPAKRIAKVDDSIRKLAKEMLQTMYSANGIGLAAPQVGINKQLLVVDCEQDKP 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
            + P++ INP+I   S++  V +EGCLS+P+   DV R   I V Y D + + Q      
Sbjct: 82  DEPPLIMINPQITRTSEELCVVEEGCLSVPNVYMDVTRPRAIEVTYKDEHGRPQKRLFAE 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           L A  +QHE+DHLNG++F+D + 
Sbjct: 142 LTARVIQHEMDHLNGVMFVDRVD 164


>gi|317121756|ref|YP_004101759.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM
           12885]
 gi|315591736|gb|ADU51032.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM
           12885]
          Length = 550

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/150 (40%), Positives = 93/150 (62%), Gaps = 6/150 (4%)

Query: 5   PLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+V    +P+LR  ++P+ K+N ++  L+D M   MY+ DGIGLAA Q+GV  R+VV+D+
Sbjct: 24  PIVKGADEPVLRTPAQPVAKVNREVRQLLDRMAATMYAADGIGLAAPQVGVSKRIVVVDV 83

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D       +  INP+I+   ++     EGCLS+P   A+V+R A + V  +D + +   
Sbjct: 84  GD-----GLIELINPEIVRRGEETETAYEGCLSLPRLLAEVERPATVQVTALDRHGRRIW 138

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153
           I  +GLLA CLQHE+DHL+G+L  D   ++
Sbjct: 139 IEGEGLLARCLQHEIDHLDGVLITDRARKV 168


>gi|289578510|ref|YP_003477137.1| peptide deformylase [Thermoanaerobacter italicus Ab9]
 gi|289528223|gb|ADD02575.1| peptide deformylase [Thermoanaerobacter italicus Ab9]
          Length = 159

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 96/153 (62%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ ++P+ +INS ++ ++D+M++ MY  +G+GLAA Q+G+L RL+V
Sbjct: 1   MAIRYIRKIGDEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+I+ + +   V  EGCLSIP    +VKR   + VRY+D   +
Sbjct: 61  IDIGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVRYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHLNG+LFID   R 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147


>gi|121533703|ref|ZP_01665530.1| peptide deformylase [Thermosinus carboxydivorans Nor1]
 gi|121307694|gb|EAX48609.1| peptide deformylase [Thermosinus carboxydivorans Nor1]
          Length = 154

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    D +L+  + P+ KI+  +  L+D+M + MY+ +G+GLAA Q+GV  R++V
Sbjct: 1   MSVLEIKKAGDKVLKEKAAPVGKIDRKVKQLLDDMAQTMYAAEGVGLAAPQVGVSLRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+          EGCLS+P    +V+R A + V  ++ + +
Sbjct: 61  VDVGD-----GLIELINPVIVAAEGS-ETNTEGCLSVPGVYGEVERYAQVVVEGLERSGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              I   GLLA  LQHE+DHL+G+LFI+    L +
Sbjct: 115 KVRITGTGLLARALQHEIDHLDGVLFIEKAKTLYK 149


>gi|327200558|pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b)
 gi|327200559|pdb|3M6O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b)
 gi|327200560|pdb|3M6P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) In Complex With Actinonin
 gi|327200561|pdb|3M6P|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) In Complex With Actinonin
          Length = 193

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 90/163 (55%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V +  
Sbjct: 2   EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPA 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I
Sbjct: 62  GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               L A   QHE DHL G+LF D ++    D I +++  L +
Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 164


>gi|323141161|ref|ZP_08076062.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
 gi|322414304|gb|EFY05122.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
          Length = 160

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 9/159 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +VI   P+LR V++P+E+I+  +  L+ +M E MYS DG+GLAA Q+GV  R+VV
Sbjct: 1   MAKLKIVIAGAPVLREVAQPVERIDKKLQRLLRDMAETMYSADGVGLAAPQVGVSKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +       INP+I+   +   +  EGCLS+PDY  +V+RS ++   + D   Q
Sbjct: 61  IDVGEGLYE-----LINPEIVKR-EGKVLGSEGCLSVPDYEGEVERSEYVECEFTDKTGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH---LSRLKRD 156
             ++ A GLLA C+QHELDHL+GILFID    +S  +++
Sbjct: 115 RMLLSASGLLAICIQHELDHLDGILFIDKAKTISPKQKE 153


>gi|309811979|ref|ZP_07705745.1| peptide deformylase [Dermacoccus sp. Ellin185]
 gi|308434037|gb|EFP57903.1| peptide deformylase [Dermacoccus sp. Ellin185]
          Length = 191

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I     L   ++ +++I  D   L+++M E M + +G+GLAA Q+GV  R+ V
Sbjct: 1   MAVRPITIVGHKALHAPTKRVKEITDDTRALVEDMFETMEAANGVGLAANQVGVKQRIFV 60

Query: 61  IDLQDHAHRKNPM-VFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D     N   V INPK+          D     EGCLS+P       R+ +  V  
Sbjct: 61  FDCPDDELGDNRRGVVINPKLEKGRVPAGEADEENDNEGCLSVPGEHFPTARADWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            D +    +I   G  A  LQHE DHL+G L++D L+   R
Sbjct: 121 TDLDGNEIVIEGHGFFARMLQHETDHLDGYLYLDRLTPTMR 161


>gi|258593266|emb|CBE69605.1| Peptide deformylase (PDF) (Polypeptide deformylase) [NC10 bacterium
           'Dutch sediment']
          Length = 169

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 1/151 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++++P P++R+ S  +  IN ++   ID+M+E MY+  G+GLAA Q+G L R++V
Sbjct: 1   MAKLSILLYPSPVIRKKSVSVTSINGELQRFIDDMVETMYAAPGMGLAAPQVGALKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D      PM  INP ++   +   V +EGCL IPD    V R   + V+  D N +
Sbjct: 61  LDPSDDRTSHRPMALINPVLVA-GEGQIVDEEGCLCIPDLNEPVSRFKQVVVKAYDRNEK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I+    LLA  LQHE+DHL+GILFID LS
Sbjct: 120 EIILEGADLLARILQHEIDHLDGILFIDRLS 150


>gi|297621379|ref|YP_003709516.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044]
 gi|297376680|gb|ADI38510.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044]
          Length = 174

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 5/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  L  + DP LR+  +P+E+IN++I  L++NM+E +   +GIGLAA QI    RL + 
Sbjct: 1   MKLELAYYGDPFLRKKCKPVEEINNEIRELVENMVETLVEYNGIGLAAPQIKQDLRLFIT 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +          +   +VFINP+I+++S++    QEGCLSIP    +V R   I ++  D
Sbjct: 61  AVPKELPNGDWEQGELIVFINPEIVSYSEETEDRQEGCLSIPKLYGNVNRPVRIVIKATD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                     +GL A C  HE DH+NG+L+ID +   +R ++  K+ ++ +
Sbjct: 121 MEGNVFERKFEGLQARCCLHENDHINGVLYIDRIRGKERKLLEPKLREIKK 171


>gi|68536091|ref|YP_250796.1| peptide deformylase [Corynebacterium jeikeium K411]
 gi|68263690|emb|CAI37178.1| polypeptide deformylase [Corynebacterium jeikeium K411]
          Length = 168

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 8/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +  F DP+L+ V+ P++     ++    L+++MLE M    G+GLAA QIG+  R
Sbjct: 1   MTVLNMRYFGDPVLKTVADPVKPEQIQDAGTRRLVEDMLETMDHYGGVGLAANQIGITRR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           + V D             INP      ++     EGCLSIPD   DV R+  + +R +  
Sbjct: 61  IFVFDCDGDRG-----HVINPTWEAVGEETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTV 115

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + +        L+A C+QHE DHL+G+LFI HLS  +R    K++ +    +
Sbjct: 116 DGEQVDREVTDLMARCVQHETDHLDGVLFIQHLSTEQRREAMKQIRESEWFK 167


>gi|294853733|ref|ZP_06794405.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
 gi|294819388|gb|EFG36388.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
          Length = 184

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 21  MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMCAAPGIGITAPHIGISKRVVV 80

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 81  LELDRAAG---PKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 138 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 184


>gi|85700135|gb|ABC74517.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKILEASELLAVAVQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|22299219|ref|NP_682466.1| peptide deformylase [Thermosynechococcus elongatus BP-1]
 gi|39930888|sp|Q8DIB4|DEF_THEEB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22295401|dbj|BAC09228.1| polypeptide deformylase [Thermosynechococcus elongatus BP-1]
          Length = 188

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/143 (42%), Positives = 91/143 (63%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ + K++  I ++   ML+ MYS DGIGLAA Q+G+  +++VID+     
Sbjct: 22  LGDRVLRQPAKRVSKVDDSIRDIARKMLQTMYSADGIGLAAPQVGINKQILVIDIHPDDP 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+V INP I  FS++  V QEGCLSIP    +V+R A + V Y D   + Q+I A G
Sbjct: 82  EAEPLVMINPVIKDFSEELEVCQEGCLSIPGVYLEVRRPAMVEVSYKDEWGRPQVIMAGG 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA  +QHE+DHL G++F+D + 
Sbjct: 142 LLARAIQHEIDHLTGVMFVDRVE 164


>gi|194289796|ref|YP_002005703.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
 gi|193223631|emb|CAQ69638.1| putative POLYPEPTIDE DEFORMYLASE PROTEIN [Cupriavidus taiwanensis
           LMG 19424]
          Length = 177

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L +V+RP+E+ N  ++  LI++M + M   +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP +   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNPRYPDAPTVPKTVLINPVLEMQSDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D         A+G  A  +QHE DHL GIL+   +        T+ +
Sbjct: 121 DLMGNRIERVAEGFHARVVQHECDHLQGILYPMRIKDFSNFGFTEVL 167


>gi|116073817|ref|ZP_01471079.1| peptide deformylase [Synechococcus sp. RS9916]
 gi|116069122|gb|EAU74874.1| peptide deformylase [Synechococcus sp. RS9916]
          Length = 201

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/148 (42%), Positives = 89/148 (60%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ +R I K++  +  L  +ML  MY+  GIGLAA Q+GV  +L+VIDL 
Sbjct: 32  DIHKLGDEVLRQEARRISKVDESVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDLD 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP+I T S     Y+EGCLSIP    DV R   I + Y D   + + +
Sbjct: 92  LETPSSPPLVLINPEITTASATVDTYEEGCLSIPGVYLDVVRPTAIQLSYRDEMGRPKTM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
            ADGL+A C+QHE+DHL G+LF+D ++ 
Sbjct: 152 KADGLMARCIQHEMDHLKGVLFVDRVTD 179


>gi|114770092|ref|ZP_01447630.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255]
 gi|114548929|gb|EAU51812.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255]
          Length = 169

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K  + +PD  L      I  I      +  +M + MY+  GIGLAA QIG++  L V
Sbjct: 1   MAIKKFIRYPDKRLSVKCELISSITDKDHEVWKDMFDSMYNMPGIGLAACQIGIMRSLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +  P    NPKI+  S  +   QEG  ++P   A++KR   +TVRY+D N  
Sbjct: 61  VDVGD--GKVEPFEMANPKILYSSGVYIENQEGSPNLPGVWANIKRPRAVTVRYIDKNGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  GL A  +QH++DHLNG +F +HLS  KR M+  K  KL + 
Sbjct: 119 QIERDFVGLWAVSVQHQIDHLNGKMFFEHLSSTKRKMLINKSQKLSKQ 166


>gi|126661353|ref|ZP_01732418.1| peptide deformylase [Cyanothece sp. CCY0110]
 gi|126617360|gb|EAZ88164.1| peptide deformylase [Cyanothece sp. CCY0110]
          Length = 187

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/147 (40%), Positives = 87/147 (59%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + +  D  LR+ ++ I K++  I  L   ML+ MYS+ GIGLAA Q+ +  +L+VID +
Sbjct: 18  DIHVLGDRALRQPAKRITKVDDSIRKLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDCE 77

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INPKI   S++  V +EGCLSIP    DV R   I V + D   + + I
Sbjct: 78  PDNPENPPLILINPKITRVSEELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRKI 137

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
            A  LLA  +QHE+DHLNG++F+D + 
Sbjct: 138 QATDLLARVIQHEMDHLNGVMFVDRVE 164


>gi|85700147|gb|ABC74523.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNS 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|164687803|ref|ZP_02211831.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM
           16795]
 gi|164603078|gb|EDQ96543.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM
           16795]
          Length = 157

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 92/152 (60%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   +P+LR+ S+ +++IN  I+ L+D+M + MY  DG+GLAA Q+G+L R+VV
Sbjct: 12  MALRQIVKIGEPVLRKKSKVVKEINDRIIELLDDMADTMYEADGVGLAAPQVGILKRVVV 71

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       +  INP+II    ++ +  EGCLS+P    DV R   + VR  +   +
Sbjct: 72  IDIGD-----GLIELINPEIIETEGEY-LDNEGCLSVPGECGDVLRPYRVKVRAQNRFGE 125

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I  + LLA    HE+DHL+GIL++D + +
Sbjct: 126 TVEIEGEELLARAFCHEIDHLDGILYVDKVIK 157


>gi|312134885|ref|YP_004002223.1| peptide deformylase [Caldicellulosiruptor owensensis OL]
 gi|311774936|gb|ADQ04423.1| peptide deformylase [Caldicellulosiruptor owensensis OL]
          Length = 166

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I+ D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRIYEDEILRKKSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+I  +S+   V  EGCLS+P+   +V+R   + V   D    
Sbjct: 61  IDIGEGA-----IELVNPQI-EYSEGSVVDVEGCLSVPNMWGEVERPQKVVVNAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+GLLA  L HE+DHL+GILF+D + R 
Sbjct: 115 EFRLEAEGLLARALCHEIDHLDGILFVDKVIRF 147


>gi|227547872|ref|ZP_03977921.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227080057|gb|EEI18020.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 190

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++ +E+  +++  LI +M E M +  G+GLAA Q+GV  RL V
Sbjct: 1   MTIRPIVIHGDPVLHEPTKAVEQPVAELQELIADMHETMDAAYGVGLAANQVGVPLRLFV 60

Query: 61  IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               D    +     NP++  +    T   D     EGCLS+P       R+++  V  +
Sbjct: 61  YHCPDGDRMRRGTVINPVLETSEVPKTMPSDDGDDDEGCLSVPGESWPTGRASWAKVTGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           D N    ++  +G  A CLQHE+ HL+G+++ D L+   +    + + 
Sbjct: 121 DENGDEVVVEGEGFFARCLQHEVGHLDGVVYTDVLTGRYKREAKRVIR 168


>gi|225569235|ref|ZP_03778260.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM
           15053]
 gi|225162034|gb|EEG74653.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM
           15053]
          Length = 157

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    + +L +  +P++K+      LI++M + MY   G+GLAA Q+GVL R+V 
Sbjct: 1   MATRKIRELGEEVLTKTCKPVDKLTLRTKVLINDMFDTMYEAYGVGLAAPQVGVLKRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+II  S +    +EGCLS+P     V R  ++ VR +D + Q
Sbjct: 61  IDVGE-----GPIVLINPEIIETSGE-QTGEEGCLSVPGKYGIVTRPDYVRVRALDEDMQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + +   GLLA    HE+DHL+G ++++
Sbjct: 115 ERELEGTGLLARAFCHEIDHLDGNMYVE 142


>gi|239835143|ref|ZP_04683470.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
 gi|239821282|gb|EEQ92852.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
          Length = 165

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 102/169 (60%), Gaps = 4/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V +PD  LR V+ P+   +S +  L  ++L+ M +  GIG+ A  IG+  RLVV
Sbjct: 1   MTVRPIVSYPDKRLRAVADPVTLFDSALQELGTDLLDTMRAAPGIGITAPHIGIAMRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L +      P  ++NP+I+  S++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELPEAG----PKFYVNPQILWASEEKIHHQEGSVSMPGVVDEVERHARIKIRYQDLDGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q   ++GLLA C QHE+D L+GI +I  LSRL+RD + K+  K  + R
Sbjct: 117 EQTEESEGLLAVCHQHEIDQLDGIFWIQRLSRLRRDRLVKRYEKSQRQR 165


>gi|241204791|ref|YP_002975887.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858681|gb|ACS56348.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 164

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   +S +  L  ++L  M +  G+G+ A  IGV+ R+ V
Sbjct: 1   MPIRPILRYPHPGLKTVCAPVTAFDSSLTALAGDLLATMRAAPGVGITAAHIGVVSRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +   +++NP I  FS +   + EG +S+P    +V R   I  RY D    
Sbjct: 61  LELDKADGVR---LYVNPHITWFSQETMSHVEGSVSMPGATDEVTRPRAIRFRYQDAEGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 118 VHEDGAEDFLAICVQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161


>gi|82523804|emb|CAI78547.1| polypeptide deformylase [uncultured Chloroflexi bacterium]
          Length = 176

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LRR +R +     ++  LID+M+E M S  G+GLAA Q+   ++++ 
Sbjct: 1   MSIREIVFTPDPVLRRKARKVTDFGPELQTLIDDMVETMRSAPGVGLAAPQVAESWQVIT 60

Query: 61  IDLQDHAH---------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           I+  + +                 +NP+I   S++  V  EGCLS+P    +V+R+  +T
Sbjct: 61  IEYSEESEEGEEGEEKVPPKLYTLVNPQITRASNETIVGTEGCLSVPGIVGEVERNEAVT 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           V+  +   Q   I A   LA   QHE+DHL G+LF D    L R
Sbjct: 121 VKAQNRRGQPVTIKAQDWLARIFQHEIDHLEGVLFTDLTDELWR 164


>gi|317012603|gb|ADU83211.1| peptide deformylase [Helicobacter pylori Lithuania75]
          Length = 174

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPKEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEAIELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|291522865|emb|CBK81158.1| peptide deformylase [Coprococcus catus GD/7]
          Length = 159

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L    DP+L +V + ++++   +  L+ +MLE MY+ +G+GLAA Q+GVL R+ V
Sbjct: 1   MAIRKLRYEGDPVLGKVCKEVKEMTPHLKELVQDMLETMYAAEGVGLAAPQVGVLRRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P VF+NPKI+  + +  +  EGCLS+P     V+R  ++     D +  
Sbjct: 61  IDVGE-----GPYVFVNPKIVETAGE-QIGDEGCLSVPGKSGTVRRPEYVKTVAFDADMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +   GL A  + HE DHL+G L+++ + 
Sbjct: 115 PIEVEGHGLFARAMCHEFDHLDGHLYLEKVE 145


>gi|258655021|ref|YP_003204177.1| peptide deformylase [Nakamurella multipartita DSM 44233]
 gi|258558246|gb|ACV81188.1| peptide deformylase [Nakamurella multipartita DSM 44233]
          Length = 190

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 82/170 (48%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  +P+VI  +P+L R +RP+ +    ++  LI +M E   +  G GLAA QIG   RL 
Sbjct: 1   MTIRPIVICGEPVLHRPTRPVTEFGTPELNTLIQDMFETNEAAHGAGLAANQIGDDRRLF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           + D  D   R+     INP I T        D     EGCLS+P       R+ +  V+ 
Sbjct: 61  IYDCPDQGSRRR-GYIINPTIETSPIPTNMPDPDDDSEGCLSVPGENFPTGRADWARVKG 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            D + +   +   G  A CLQHE DHL+G L+ID L    +    K + +
Sbjct: 120 FDSDGEPIEVEGTGFFARCLQHETDHLDGHLYIDRLIGKNQKRAFKAVRE 169


>gi|308177361|ref|YP_003916767.1| peptide deformylase [Arthrobacter arilaitensis Re117]
 gi|307744824|emb|CBT75796.1| peptide deformylase [Arthrobacter arilaitensis Re117]
          Length = 190

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + ++ +P+L + +  + + +  +  L+ +M   M    G+GLAA QIG+  R+  
Sbjct: 1   MPIRQITVYGEPVLHKRAVEVTEFDDALRALVADMHLTMDEAHGVGLAAPQIGLGLRMFT 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               D        V INPK+                EGCLS+P     ++R+ +  V   
Sbjct: 61  YVFADQDDAPERGVVINPKLTLSKVSQAPAHPDEDSEGCLSVPGLNYPLQRADYAKVEGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D         A G  A  +QHE DHL+G L++D L         K    L
Sbjct: 121 DEFGNPISFEAHGWFARIMQHEYDHLDGYLYVDKLQPRWEKRWKKAKKAL 170


>gi|284031594|ref|YP_003381525.1| peptide deformylase [Kribbella flavida DSM 17836]
 gi|283810887|gb|ADB32726.1| peptide deformylase [Kribbella flavida DSM 17836]
          Length = 201

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 3/167 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+  + + ++ RV++P+     D+  L+ +M+  M + +G+GLAA Q+GV  +L V D
Sbjct: 10  VLPITRWGEDVMHRVNQPVTDFGDDLHKLVADMVATMNAAEGVGLAANQVGVDLQLFVFD 69

Query: 63  LQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             D    ++  V  NPK+             +EGCLS+P       R  +  V  +D + 
Sbjct: 70  CPDRDGVRHQGVVCNPKLELPEGKDRHLDEGEEGCLSLPGAFTKCARPDYAKVTGVDEHG 129

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                  +GLLA CLQHE DH  G++F D LSR  +  +  +  +L 
Sbjct: 130 NPVSYEGNGLLARCLQHETDHTQGMVFGDRLSRKYKKRLFAEAEELA 176


>gi|297182175|gb|ADI18346.1| N-formylmethionyl-tRNA deformylase [uncultured actinobacterium
           HF4000_04C13]
          Length = 180

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + +  DP+LRR +  +  ++  ++ L D+M   MY   GIGLAA Q+GV  R  V
Sbjct: 1   MAPHQIRLIGDPVLRRPATDVTDVDGALVRLTDDMFTTMYEAPGIGLAAPQVGVQKRFFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D     H +   V +NP+II  SD    ++EGCLS+PD   ++ R   + +  +D +  
Sbjct: 61  YD-----HGEGAGVILNPRIIE-SDGEWTFEEGCLSVPDLTWEITRPKQVHLVGVDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I AD + A   QHE+DHL+G+L +DHL   +     + + ++   R
Sbjct: 115 EVSIEADEIEARLFQHEIDHLDGVLLVDHLDEDQAREARRALREMTMSR 163


>gi|77920127|ref|YP_357942.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380]
 gi|77546210|gb|ABA89772.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380]
          Length = 167

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 101/168 (60%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  K ++++P P L+ +  P+ + + ++ +LI ++++ M +    +G+AA QIG+  R+V
Sbjct: 1   MAVKDILLYPHPALKEICTPVTQCDENVDSLIQDLIDTMVAAGHSVGVAAPQIGITRRVV 60

Query: 60  VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+             +V INP+I+      +  +EGC+S+PDY  +V R+  + V+Y+
Sbjct: 61  VVDVSHSKLGRKENHGLIVMINPEILEQEGRTAS-REGCMSVPDYTGNVTRAESVVVQYL 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           D +   Q+I A G  A  LQHE+DHL+G+LF+D +S LK D+  +K  
Sbjct: 120 DRSGNKQVIRATGFEAIALQHEIDHLDGLLFLDRVSSLKTDLFRRKKR 167


>gi|255657698|ref|ZP_05403107.1| peptide deformylase [Mitsuokella multacida DSM 20544]
 gi|260849886|gb|EEX69893.1| peptide deformylase [Mitsuokella multacida DSM 20544]
          Length = 155

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +     P+L+ V  P+EKI+ D+  L+D+M   MY +DG+GLAA Q+G   R+VV
Sbjct: 1   MAILEIKKAGAPVLKEVCAPVEKIDKDLRKLLDDMAVTMYESDGVGLAAPQVGRPIRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID QD       +  INP I TF +  +   EGCLS+P    +V+R+A + V +++   +
Sbjct: 61  IDCQDDHG---LIELINPVI-TFREGTATDTEGCLSVPGIYGEVERAAKVKVEFLNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            Q + A GLLA C+QHELDHL G LFID    L R
Sbjct: 117 KQHLTATGLLARCIQHELDHLEGQLFIDIAKSLHR 151


>gi|242058133|ref|XP_002458212.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor]
 gi|241930187|gb|EES03332.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor]
          Length = 264

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 86/163 (52%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PDPILR  ++ I   ++++  L D M +VMY TDGIGL+A Q+GV  +L+V +  
Sbjct: 74  EVVKYPDPILRARNKRINAFDANLRALADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPA 133

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +V +NP +   +    V++EGCLS P    +V R   + +   D       +
Sbjct: 134 GVKGEGEEIVLVNPVVYKSAKRLLVFEEGCLSFPGIYGNVLRPESVKIEAQDVTGAKIKV 193

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              GL A   QHE DHL GILF D ++    + + +++  L +
Sbjct: 194 KLSGLPARVFQHEFDHLLGILFFDRMTMDVLETVREELKNLEK 236


>gi|312197386|ref|YP_004017447.1| peptide deformylase [Frankia sp. EuI1c]
 gi|311228722|gb|ADP81577.1| peptide deformylase [Frankia sp. EuI1c]
          Length = 205

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 85/181 (46%), Gaps = 19/181 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +  DP+LR  + P+   +  +  L+D+M+E MY+  G+GLAA Q+GV  RL V
Sbjct: 1   MTVLPIRVLGDPVLRTPAGPVTVFDDRLRRLVDDMIETMYAAPGVGLAAPQVGVGLRLFV 60

Query: 61  IDLQDHAHRKN------------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
            D     +R +                  P V  NP +          QEGCLSIP    
Sbjct: 61  FDTDWQPNRPDRHEDDAVPEAAGRARGRAPRVVANPVL-ELGPGEQNDQEGCLSIPGLHY 119

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
              R+A  TVR +D           GLLA CLQHE DHL G L++D L+ L R    + +
Sbjct: 120 ATARAAAATVRGVDAAGDPVEYAGTGLLARCLQHEADHLAGTLYVDRLTGLTRRSAQRAL 179

Query: 163 S 163
            
Sbjct: 180 R 180


>gi|300859237|ref|YP_003784220.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686691|gb|ADK29613.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206928|gb|ADL11270.1| Peptide deformylase [Corynebacterium pseudotuberculosis C231]
 gi|302331492|gb|ADL21686.1| N-formylmethionyl-tRNA deformylase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277182|gb|ADO27081.1| N-formylmethionyl-tRNA deformylase [Corynebacterium
           pseudotuberculosis I19]
          Length = 197

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P+VI  DP+L   +  + +   + ++  LI +M E M    G+GLAA QIGV  RL
Sbjct: 1   MTVRPIVIHGDPVLHNPTAEVTEPIDSPELQELIADMYETMAVAHGVGLAANQIGVGKRL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITV 112
            V +  D     +    INP + T         D     EGCLS+P       R+ +  V
Sbjct: 61  FVFNCPDDQGHMHRGCVINPILETTEIPQTMPSDDGSDDEGCLSVPGEGFPTGRATWAKV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +D +         G LA C QHE+ HL+G L+ D L    +    K + +
Sbjct: 121 TGLDEHGNPVSYEGTGFLARCFQHEVGHLDGFLYTDTLVGRYKRQAKKAIKR 172


>gi|241667516|ref|ZP_04755094.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876062|ref|ZP_05248772.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842083|gb|EET20497.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 172

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P PIL+ +++ +  E+I+ D    I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPILKEIAQEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++     +     +  INPKII  S    + +EGCLS P   A V R+  + ++ ++   
Sbjct: 61  IMYDNLESETPKIITIINPKIIDQSG-KIIDEEGCLSFPGVSAKVNRATRVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q   +  D  LA C+QHE+DHLNG+ F DHL  LKR MI KK  KL+Q 
Sbjct: 120 QEIEVEKDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQE 168


>gi|238019378|ref|ZP_04599804.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748]
 gi|237864077|gb|EEP65367.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748]
          Length = 162

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    P+L++++ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLDVVKAGHPVLKQIAEPVEHVNKKLRALIDDMAETMYETEGVGLAAPQVAVSKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  DHA     +  INP+I T ++   V  EGCLS+P Y  DV+R   ITV+ +D + +
Sbjct: 61  VD--DHAGSG-LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFDKITVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I A+G LA   QHE+DHL G LFI+  + L+
Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150


>gi|328676180|gb|AEB27050.1| Peptide deformylase [Francisella cf. novicida Fx1]
          Length = 172

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 5/168 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILNYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++   D+   +NP +               + +EGCLS P   A V R+  + ++ ++  
Sbjct: 61  IM--YDNLEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEF 118

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+
Sbjct: 119 GDEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 166


>gi|229828535|ref|ZP_04454604.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM
           14600]
 gi|229793129|gb|EEP29243.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM
           14600]
          Length = 160

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DPIL++V RP+ K++     LID+MLE MY  +G+GLAA Q+GVL R+VV
Sbjct: 1   MAIREIRIDGDPILKKVCRPVSKLSDRQQELIDDMLETMYEANGVGLAAPQVGVLRRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V +NP+I     +  + +EGCLS+P   A V R   +  R +D N +
Sbjct: 61  IDVGE-----GPLVMVNPEITEKDGE-QIGEEGCLSVPGKAAIVTRPEHVIARALDRNMK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +   GLLA  + HELDHL+G ++ +
Sbjct: 115 EFSVEGTGLLARAICHELDHLDGHMYTE 142


>gi|260167211|ref|ZP_05754022.1| peptide deformylase [Brucella sp. F5/99]
 gi|261756615|ref|ZP_06000324.1| peptide deformylase-like protein [Brucella sp. F5/99]
 gi|261736599|gb|EEY24595.1| peptide deformylase-like protein [Brucella sp. F5/99]
          Length = 164

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A  K   ++INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRAAGSK---IYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|87125300|ref|ZP_01081146.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
 gi|86167069|gb|EAQ68330.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
          Length = 201

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/149 (40%), Positives = 92/149 (61%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ ++ I K+++ + +L  +ML  MY+  GIGLAA Q+GV  +L+VIDL 
Sbjct: 32  EIHTLGDRVLRQPAKRISKVDAAVRDLARDMLRSMYTARGIGLAAPQVGVHKQLLVIDLD 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP+I + S     Y+EGCLSIP    DV R + I + Y D   + + +
Sbjct: 92  IENAAAPPLVLINPEITSASASVDTYEEGCLSIPGVYLDVVRPSAIQLSYRDEMGRPRTM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153
            ADGL+A C+QHE+DHL G+LF+D ++  
Sbjct: 152 KADGLMARCIQHEMDHLKGVLFVDRVTDE 180


>gi|226325272|ref|ZP_03800790.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758]
 gi|225206620|gb|EEG88974.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758]
          Length = 156

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +V + + K+      LID+MLE MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRKIREIGDEVLTKVCKEVTKMTPRTTELIDDMLETMYEAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S +    +EGCLS+P     V R  ++    +D + +
Sbjct: 61  IDIGE-----GPVVMINPRIVESSGE-QTGEEGCLSVPGKSGIVTRPNYVKAVALDEDMK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  +GL+A  + HEL+HL+G L+++ + 
Sbjct: 115 EYEIEGEGLMARAICHELEHLDGHLYVEKVE 145


>gi|239826564|ref|YP_002949188.1| peptide deformylase [Geobacillus sp. WCH70]
 gi|239806857|gb|ACS23922.1| peptide deformylase [Geobacillus sp. WCH70]
          Length = 157

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +P  IL  +  P+++ +  ++ L+++M E M   DG+GLAA Q+G+  ++ V
Sbjct: 1   MAILPIVTYPADILETMCEPVKQFDRQLIQLLNDMYETMIDEDGVGLAAPQVGIAKQIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R      INP+II    +  +  EGCLS P    +VKR+ ++ VR  D   +
Sbjct: 61  VDVGDKHGRIE---LINPRIIEARGE-QIGPEGCLSFPGLFGEVKRANYVKVRAQDRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A   LA  LQHE+DHLNGILF   + R
Sbjct: 117 VFTLEATEFLARALQHEIDHLNGILFTSKVIR 148


>gi|295109186|emb|CBL23139.1| peptide deformylase [Ruminococcus obeum A2-162]
          Length = 157

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR++SRP++++   I+ LID+ML+ MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRVIRTEEDPVLRKISRPVKEVTPKIVTLIDDMLDTMYEAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P++ INP+I+  S +     EGCLS+P     V R  ++ V+ MD +  
Sbjct: 61  IDIGE-----GPIILINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAMDEDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I     LLA    HE+DHL+G ++ D + 
Sbjct: 115 EVIYEGTELLARAFCHEIDHLDGKMYTDLVE 145


>gi|229493717|ref|ZP_04387501.1| peptide deformylase [Rhodococcus erythropolis SK121]
 gi|229319386|gb|EEN85223.1| peptide deformylase [Rhodococcus erythropolis SK121]
          Length = 199

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L + + P+ +  ++I  LI +M E M + +G+GLAA Q+GV  R+ V
Sbjct: 1   MAILPIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVPLRVFV 60

Query: 61  IDLQ--DHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            D    D +  +   V +NP + T        D     EGCLS+P  +    R+ +  V 
Sbjct: 61  YDCPGDDRSSERRRGVVVNPVLETSEIPQTMPDPDEDFEGCLSVPGEQFPTGRADWAKVT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D +     +   G  A  LQHE  HL+G L+ D L   +     KK+ K
Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVLIG-RNARAAKKIIK 170


>gi|188574933|ref|YP_001911862.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519385|gb|ACD57330.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 152

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/139 (49%), Positives = 97/139 (69%), Gaps = 3/139 (2%)

Query: 29  MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88
             L+D+M + MY   GIGLAA Q+ V  R +VID+ D   +  P VF+NP+I++   +  
Sbjct: 14  QALLDDMFQTMYEAPGIGLAASQVDVHKRFMVIDVSD--EKNLPQVFVNPEIVSKQGE-Q 70

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           + QEGCLS+P   ADV R+  ITVRY+D   Q Q ++ADGLLA C+QHE+DHL+G LF+D
Sbjct: 71  LCQEGCLSVPGIYADVSRADAITVRYLDRQGQAQELHADGLLAVCIQHEMDHLDGKLFVD 130

Query: 149 HLSRLKRDMITKKMSKLVQ 167
           +LS LKR+M+ KK++K  +
Sbjct: 131 YLSPLKREMVRKKLAKQRK 149


>gi|184200810|ref|YP_001855017.1| peptide deformylase [Kocuria rhizophila DC2201]
 gi|183581040|dbj|BAG29511.1| peptide deformylase [Kocuria rhizophila DC2201]
          Length = 249

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 15/179 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR  ++ + + +  +  L+ +M+E MY+  G+GLAA Q+GV  ++  
Sbjct: 1   MSILRIRTIGDPVLRTPAQEVPQFDESLRTLVRDMVETMYAVGGVGLAAPQVGVGLQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             ++           +NP++ +   +     EGCLS+P    +  R    T+  +D + +
Sbjct: 61  WGIEGDEG-----HVVNPRL-SVGHEPQDGGEGCLSVPGLSYETPRMDSATLTGVDMHGR 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM---------SKLVQLRD 170
                A GLLA C QHE DHL G L++D L    R    +++          ++ + RD
Sbjct: 115 PVHRDATGLLARCFQHETDHLRGTLYVDRLEGEHRRDAMRQLRGEAFRATAERIARERD 173


>gi|78213784|ref|YP_382563.1| peptide deformylase [Synechococcus sp. CC9605]
 gi|123756848|sp|Q3AHC4|DEF_SYNSC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78198243|gb|ABB36008.1| Formylmethionine deformylase [Synechococcus sp. CC9605]
          Length = 201

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ +R I K+N  +  L  +ML  MY+  GIGLAA Q+G+  +L+VIDL 
Sbjct: 32  EIHTLGDEVLRQPARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLD 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP+I   S     Y+EGCLSIP    DV R   I + + D   + + +
Sbjct: 92  LENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGL+A C+QHE+DHLNG+LF+D ++   +D + K++ +
Sbjct: 152 KADGLMARCIQHEMDHLNGVLFVDRVTD--QDGLQKELKE 189


>gi|54027275|ref|YP_121517.1| peptide deformylase [Nocardia farcinica IFM 10152]
 gi|54018783|dbj|BAD60153.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
          Length = 196

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 9/173 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI  DP+L   +  + +   ++  LI +M E M + +G+GLAA Q+GV  RL V
Sbjct: 1   MAILPIVIVGDPVLHNPTERVTQTPEELAGLIADMYETMDAANGVGLAANQVGVPLRLFV 60

Query: 61  IDLQDHAHRKNPM----VFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
            D  D      P+      INP     +I     D    +EGCLS+P  +    R+ +  
Sbjct: 61  YDCPDAGPDGQPVRRRGAVINPVLETSEIPETMPDPDDDEEGCLSVPGEQFPTGRAEWAR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           V  +D N     I   G  A  LQHE+ HL+G L++D L         K + +
Sbjct: 121 VTGIDENGGPVDIEGKGFFARMLQHEVGHLDGYLYVDKLVGRHARAAKKTIKR 173


>gi|302540350|ref|ZP_07292692.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302457968|gb|EFL21061.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 185

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 69/145 (47%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +PL +  D  LR     +   ++ +  L++++   MY+  G+GLAA QIGV  R+ V 
Sbjct: 15  TVRPLRLLGDQALRAPCEEVGDFDAALARLVEDLFATMYAAGGVGLAANQIGVGLRVFVY 74

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D   R++    +NP++           EGCLS+P   +   R     V  +    + 
Sbjct: 75  DCPDDEDRRHLGHVVNPRLAEADGVTVRGTEGCLSLPGIESGTPRFDRAVVEGVTATGEP 134

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
             +   G  A CLQHE DHL+G LF
Sbjct: 135 VRVEGSGFFARCLQHECDHLDGGLF 159


>gi|126463293|ref|YP_001044407.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104957|gb|ABN77635.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 163

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +   P E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAILPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++     +EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGREGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q     G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEALLTGIDAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|193215216|ref|YP_001996415.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110]
 gi|193088693|gb|ACF13968.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110]
          Length = 202

 Score =  184 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+    +P+L +V++P++ +++++   I++M E MY+ DGIGLAA Q+G   RL+V
Sbjct: 19  MSILPVYTLGEPVLNKVAKPLKGVDAEMKQFIEDMFETMYNADGIGLAAPQVGKSLRLLV 78

Query: 61  IDLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+   +    + P+V INP+I+      S  +EGCLS+P    +V R   IT++Y D +
Sbjct: 79  VDVSVMEDYQDEKPLVVINPQILETKG-LSTMEEGCLSVPGVHEEVTRPKQITLKYRDAD 137

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              ++   DG++A  LQHE++HL G LFID+L    R +  +++  +
Sbjct: 138 FVERVEIYDGMMARVLQHEIEHLQGNLFIDNLDAKTRRLHREELDAI 184


>gi|325478778|gb|EGC81889.1| peptide deformylase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 155

 Score =  184 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 3/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR+ S+ + ++   I  L+D+M E MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRQEGDPLLRKKSKVVPEVTDRIKVLLDDMAETMYQADGVGLAAPQVGILKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D   H      +  +NP+II    +  V  EGCLSIP++ A VKR   + V+Y+D +  
Sbjct: 61  VD--PHDETTGLVKLVNPEIIEADGE-QVGVEGCLSIPNFNATVKRPEHVKVKYIDEDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
            +I  A G  A  L HE+DHL+GILF D 
Sbjct: 118 EKIWDAHGFPAVILSHEIDHLDGILFRDK 146


>gi|315185956|gb|EFU19720.1| peptide deformylase [Spirochaeta thermophila DSM 6578]
          Length = 163

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            L    D  LR+ +  + +I+  +  +++ M ++M+  +GIGLAA Q+G+  R  +  + 
Sbjct: 2   ELRYLGDETLRKRAVLVPEIDGRLARVVEGMFDLMHEANGIGLAAPQVGISQRFFICHVP 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +      P+VFINP+I   S + + ++EGCLSIP   ADV R A + V   +   +   +
Sbjct: 62  E----GEPLVFINPEITATSPELATFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRM 117

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            ADGLLA  +QHE DHLNG+LF+D L   KR+ + +
Sbjct: 118 EADGLLARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153


>gi|163744870|ref|ZP_02152230.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45]
 gi|161381688|gb|EDQ06097.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45]
          Length = 165

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  V++PD  LR  + PIE +  +I  L D+M+E M +  G+GLAA QIGV+ ++ V
Sbjct: 1   MTLRRYVLWPDKRLRSPAEPIEAVTDEIRTLWDDMIETMDAMPGVGLAAPQIGVMLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +  +++  +   NP II  S     Y+E   ++P + A ++R   + VR++D    
Sbjct: 61  VDASEARNKR--IRLANPVIIDASAVLHPYEEASPNLPGFSAVIRRPRGVKVRFLDETGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  GL A  +QH++DHL G ++ D+LS+ KRDM+ +K  KL
Sbjct: 119 EVERDFVGLEAVSVQHQIDHLAGKMYFDNLSKTKRDMLLRKARKL 163


>gi|312143913|ref|YP_003995359.1| peptide deformylase [Halanaerobium sp. 'sapolanicus']
 gi|311904564|gb|ADQ15005.1| peptide deformylase [Halanaerobium sp. 'sapolanicus']
          Length = 150

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 92/153 (60%), Gaps = 5/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L    DP+LR  ++ ++KI    + LIDNM E MY+ +G+GLAA Q+G+L R+ V
Sbjct: 1   MAVLKLREIGDPVLRSKAKKVDKITPKTIQLIDNMFETMYAEEGVGLAAPQVGILKRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+       N +V INP+II  +    + +EGCLSIP    +V RS  I V  ++ + +
Sbjct: 61  IDI----GEGNKIVLINPEIIEENGKM-IMEEGCLSIPGRTGEVIRSKEIKVSSLNRDGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I A+G  A  +QHE+DHL+G+LFID +  L
Sbjct: 116 EIEIIAEGFEARAIQHEIDHLDGVLFIDKMVEL 148


>gi|313905223|ref|ZP_07838591.1| peptide deformylase [Eubacterium cellulosolvens 6]
 gi|313469976|gb|EFR65310.1| peptide deformylase [Eubacterium cellulosolvens 6]
          Length = 173

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+L +V +P+ K++  +  L+ +M + MY   G+GLAA Q+GVL R+ V
Sbjct: 1   MAIRTIRTEGDPVLEKVCKPVAKMSLRMKILVKDMFDTMYDACGVGLAAPQVGVLRRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      ++P VF+NP+II  S +     EGCLSIP     V R  ++ V+  D N +
Sbjct: 61  IDVDG----EHPYVFVNPEIIEMSGE-QTGDEGCLSIPGMTGTVTRPDYVKVKAFDINME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + A GLLA    HE +HL+G+L+  H+    R
Sbjct: 116 PFELEATGLLARACCHEFEHLDGVLYTCHVQGRLR 150


>gi|113474637|ref|YP_720698.1| peptide deformylase [Trichodesmium erythraeum IMS101]
 gi|110165685|gb|ABG50225.1| peptide deformylase [Trichodesmium erythraeum IMS101]
          Length = 187

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/160 (39%), Positives = 99/160 (61%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D  LR+ ++ + K++SD+  L+  ML+ MY+ DGIGLAA Q+ V  +++VID +
Sbjct: 18  EIYYLGDRSLRQSAKRVAKVDSDMRKLVREMLQTMYTADGIGLAAPQVNVQKQVIVIDCE 77

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP I  +S+D  ++QEGCLSIP    DV+R + I V Y D N + Q +
Sbjct: 78  PTNSATPPLVLINPTIKKYSNDICLFQEGCLSIPGVYLDVQRPSEIEVAYKDENGRPQTL 137

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A  LL+  +QHE+DHL GILF+D +    +  + ++++K
Sbjct: 138 QAQELLSRAIQHEMDHLQGILFVDRVEN--KLALNEELAK 175


>gi|78066802|ref|YP_369571.1| peptide deformylase [Burkholderia sp. 383]
 gi|77967547|gb|ABB08927.1| Peptide deformylase [Burkholderia sp. 383]
          Length = 177

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V++P+E+ +  ++  ++ +M E M+  +G GLAA QIG+  +L++
Sbjct: 1   MIREILKMGDPRLLEVAKPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGNNNRYPDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +     ADG  A  +QHE DHL G L+   ++   R   T+ +
Sbjct: 121 DQYGEKIDRVADGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167


>gi|126738020|ref|ZP_01753741.1| peptide deformylase [Roseobacter sp. SK209-2-6]
 gi|126720517|gb|EBA17222.1| peptide deformylase [Roseobacter sp. SK209-2-6]
          Length = 168

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 2/150 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +P   L +    +    S + +L+ +M E MY+  G GLAA Q+GV++RL V
Sbjct: 1   MALLPILRWPHEGLSKRCEEVAP--STLGSLVADMFETMYAAPGRGLAAPQVGVMHRLFV 58

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D        +P+V INP+I+ +     +  EGCLSIP    DV+RS  + +R+ D    
Sbjct: 59  MDATWKEGPGSPVVMINPEIMAYDGGTDILAEGCLSIPGITIDVERSKSVNMRWQDQAGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
            Q  +  G  A C+QHE DHL G +  DHL
Sbjct: 119 WQERWFSGFEARCIQHEFDHLEGRVTFDHL 148


>gi|332673404|gb|AEE70221.1| peptide deformylase [Helicobacter pylori 83]
          Length = 174

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPKEDGVQHKEDCLEIINPKFIET-GGSIMYREGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +I+ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKILEASELLAVAIQHEMDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|27262480|gb|AAN87521.1| Polypeptide deformylase [Heliobacillus mobilis]
          Length = 166

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   DP+LR  ++ + K N+++  L+D+M + M +  G+GLAA QIG+  R+VV
Sbjct: 15  MAVYEIVKIGDPVLREKAKTVTKFNANLGRLMDDMYDTMVAAKGVGLAAPQIGISKRVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       +  +NP+I+       +  EGCLSIPD++ +V RS  + V+  + N +
Sbjct: 75  IDVGD-----GRIELVNPEILEAEGS-QIDVEGCLSIPDFQEEVNRSQRVKVKAQNRNGE 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +I   G LA  LQHE+DHL G+LF+D L +
Sbjct: 129 EYVIEGTGFLARALQHEIDHLEGVLFVDLLDK 160


>gi|290957509|ref|YP_003488691.1| polypeptide deformylase [Streptomyces scabiei 87.22]
 gi|260647035|emb|CBG70134.1| putative polypeptide deformylase [Streptomyces scabiei 87.22]
          Length = 216

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              P+ +  +P+L +  + + +   ++  L+D+M     + +G+GLAA Q+GV  ++ V 
Sbjct: 40  TSLPITVVGNPVLHKECKDVTEFGDELAKLVDDMFASQRTAEGVGLAANQVGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D   +++  V  NPK++    +        EGCLS+P     + R  +  V   D  
Sbjct: 100 DCPDDEGKRHTGVICNPKLVELPAEARRLDDSNEGCLSVPTAYMPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205


>gi|288574972|ref|ZP_06393329.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570713|gb|EFC92270.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 164

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 6/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I+PDP+LR  ++ IE+ + +  + ++ M  +MY  DG+GLAA Q+G   ++ V
Sbjct: 1   MSDRTIRIYPDPVLREPTKEIERFDDNFKSFLEEMESLMYEYDGVGLAAPQVGESLKVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I  +   H     V INP+I+ + D   V QEGCLS P    DV R A + V   D N +
Sbjct: 61  IAYEGKLH-----VLINPRIVDY-DGRQVDQEGCLSFPGIFEDVARPASVVVEAQDENGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A+G LA  + HE+DHLNG L IDHLS +KR+M+
Sbjct: 115 PYSIEAEGFLARAMCHEIDHLNGKLMIDHLSPMKREMV 152


>gi|85700139|gb|ABC74519.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 105/170 (61%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +  +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEPQK 169


>gi|172039521|ref|YP_001806022.1| peptide deformylase [Cyanothece sp. ATCC 51142]
 gi|171700975|gb|ACB53956.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142]
          Length = 187

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/147 (39%), Positives = 87/147 (59%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + +  D +LR+ ++ I K++  +  L   ML+ MYS+ GIGLAA Q+ +  +L+VID +
Sbjct: 18  DIHVLGDRVLRQPAKRIAKVDDSVRQLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDCE 77

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INPKI   S +  V +EGCLSIP    DV R   I V + D   + + I
Sbjct: 78  PDNPANPPLILINPKITRVSQELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRKI 137

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
            A  LLA  +QHE+DHLNG++F+D + 
Sbjct: 138 QATDLLARVIQHEMDHLNGVMFVDRVD 164


>gi|254695522|ref|ZP_05157350.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|261215912|ref|ZP_05930193.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260917519|gb|EEX84380.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 164

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++INP+I+   ++   +Q G +S+P    +V+R A I +RY D +  
Sbjct: 61  LELDRAAG---PKIYINPEIVWACEEKIRHQVGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|217077056|ref|YP_002334772.1| def peptide deformylase [Thermosipho africanus TCF52B]
 gi|217036909|gb|ACJ75431.1| def peptide deformylase [Thermosipho africanus TCF52B]
          Length = 165

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 100/164 (60%), Gaps = 6/164 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + ++ DPILR+ ++ +E     I  + +++L++MY  DG+GLAA Q+G+  R   +D   
Sbjct: 3   IRLYGDPILRKKAKIVEDF-EYIQQIKEDLLKIMYLEDGVGLAAPQVGISLRFFAMD--- 58

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P++ +NP+II  S +  + +EGCLS+P    DV+R  ++ +RY D   + Q   
Sbjct: 59  --DGSGPLIIVNPEIIEHSQEKEIGEEGCLSLPGIFEDVERYKWVKLRYQDEYGKVQEKL 116

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +G  A  +QHE DHL+GILFIDHL    +  ++ ++SK++++R
Sbjct: 117 FEGYSARIVQHERDHLDGILFIDHLPTSVKRRLSTELSKIMRMR 160


>gi|284989160|ref|YP_003407714.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
 gi|284062405|gb|ADB73343.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
          Length = 185

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 6/168 (3%)

Query: 2   VKKPLVIFP-DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           V +P+V +  +P+L R   P+     D+  L+ +M   M + DG+GLAA QIGV  R+ V
Sbjct: 10  VARPIVTYGSNPVLHRPCAPVTAFGKDLRRLVLDMFASMEAADGVGLAANQIGVDARVFV 69

Query: 61  IDLQDHAHRKNPMVFINPKI-----ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID  D          +NP++             V  EGCLS+P   A++ R+    V  +
Sbjct: 70  IDCPDADGEDVVGYVVNPELTVLEPREGEPAEEVTDEGCLSVPGPYAELPRAFRARVDGV 129

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           D +     I A G+ A CLQHE+DHL+G +++D L    R+ +  + +
Sbjct: 130 DADGAPVSIEATGMAARCLQHEVDHLDGTVYVDRLPGDLRERLLAEAA 177


>gi|78188466|ref|YP_378804.1| peptide deformylase [Chlorobium chlorochromatii CaD3]
 gi|78170665|gb|ABB27761.1| peptide deformylase [Chlorobium chlorochromatii CaD3]
          Length = 199

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+   +LR+ ++P++ ++ +I  LI  M E M++  GIGLAA Q+G   RL+V+
Sbjct: 12  MILPITIYSHEVLRQKAKPLKGVDKEIETLIAAMFESMHNASGIGLAAPQVGRSLRLLVL 71

Query: 62  DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D+    + K+  PMV INP I++        +EGCLS+P  + DV R + IT++Y +   
Sbjct: 72  DVSCLKNYKDEKPMVVINPHILSVRGA-CAMEEGCLSVPGVQGDVVRPSAITMKYRNERF 130

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +       G++A  LQHE+DHL+G LF+D + +  +  I  ++++L 
Sbjct: 131 EELTAEFSGMVARVLQHEIDHLDGKLFVDRMDKRDKRKIQHELNELT 177


>gi|83941566|ref|ZP_00954028.1| peptide deformylase [Sulfitobacter sp. EE-36]
 gi|83847386|gb|EAP85261.1| peptide deformylase [Sulfitobacter sp. EE-36]
          Length = 155

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +PD  L  V  P+     +I  LI +M E MY+  G GLAA Q+G   R+ V
Sbjct: 1   MSVLDIVTWPDARLTAVCAPVATRTPEIDQLIADMFETMYAAPGRGLAAPQVGRTERIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D         P+  INP+I++ SD  ++ +EGCLSIP    D+ R+  +T+R+ D +  
Sbjct: 61  FDAGWKEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADG- 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
                  G  A  +QHE DHL+GI+  D +
Sbjct: 120 THERKFTGAEAVIVQHEYDHLDGIVIYDRV 149


>gi|332298812|ref|YP_004440734.1| Peptide deformylase [Treponema brennaborense DSM 12168]
 gi|332181915|gb|AEE17603.1| Peptide deformylase [Treponema brennaborense DSM 12168]
          Length = 187

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 4/164 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++   + +LRR S P+ ++  +I  L  +M ++M    G+GLAA Q+GVL RL VI   D
Sbjct: 3   ILYLGEQLLRRKSEPVNEVTDEIRRLTQDMFQLMDEAQGVGLAAPQVGVLKRLFVITADD 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R    VFINP+II  S +   Y+EGCLSIP     + R A +TV+ ++ + +   + 
Sbjct: 63  GVRR----VFINPQIIATSSETCDYEEGCLSIPQIYEHITRPAKVTVQAINEHGKPFTLE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           ADG LA  +QHE DHL+GIL+ID      R        K  + R
Sbjct: 119 ADGFLARIIQHENDHLDGILYIDRGDPDFRAKTIDSFEKKAERR 162


>gi|325292946|ref|YP_004278810.1| polypeptide deformylase [Agrobacterium sp. H13-3]
 gi|325060799|gb|ADY64490.1| polypeptide deformylase [Agrobacterium sp. H13-3]
          Length = 164

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 91/167 (54%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L  +  P+   +  + NL+ ++++ M +  G+G+ A  IGV  R+ V
Sbjct: 1   MAIRPILSYPHAGLSEICAPVTVFDDHLQNLVTDLIDTMRAAPGVGITAAHIGVKQRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L         + +INP+I++ S     + EG +S+P +  +V+R + + VR+ D    
Sbjct: 61  LELTP----GTVLTYINPEIVSHSAQTMRHVEGSVSMPGFTEEVERPSEVEVRFQDVAGV 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                A    A C+QHE+D L+G+ ++  LS+LKRD + KK  K  +
Sbjct: 117 EHRESAKAFHAICIQHEIDQLDGVFWLKRLSKLKRDRLVKKWEKSRK 163


>gi|227504404|ref|ZP_03934453.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
 gi|227199052|gb|EEI79100.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
          Length = 162

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 1/155 (0%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           + DP+L   +  IEK +S +  L ++MLE M +  G+GLAA QIG+  R+ V D   H  
Sbjct: 2   YGDPVLTSRATEIEKFDSSLEALANDMLETMDAAGGVGLAANQIGLTKRIFVYDCS-HFQ 60

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                  INP      D      EGCLSIPD   + +R   + V   D       + A G
Sbjct: 61  TGLRGAIINPVWTPLGDKTQDGPEGCLSIPDITENTERYESVVVHGRDVRGNAISMVASG 120

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           L+A C+QHE DHL+G+LF+  L+  +R    + + 
Sbjct: 121 LMARCIQHETDHLDGVLFLQRLTPERRKEAMQVIR 155


>gi|123965312|ref|YP_001010393.1| peptide deformylase [Prochlorococcus marinus str. MIT 9515]
 gi|158512726|sp|A2BU25|DEF_PROM5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123199678|gb|ABM71286.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 203

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/160 (38%), Positives = 98/160 (61%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    + +LR  ++ I K++ D  NL  +ML+ MYS  GIGLAA Q+G+   L+VID+ 
Sbjct: 32  EIFKLGNDVLRTNAKRIGKVDLDTRNLAKDMLKSMYSAKGIGLAAPQVGISKELLVIDIN 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INP+I  F +  + Y+EGCLSIP    +V R + I +R+ D   + + +
Sbjct: 92  FEDSAAEPLILINPEITAFGNTLNSYEEGCLSIPGVYLNVVRPSTIKLRFSDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGLLA C+QHE+DHL G+LF+D ++   ++ +  ++ K
Sbjct: 152 NADGLLARCIQHEVDHLRGVLFVDRVTS--KEDLKTELKK 189


>gi|62184939|ref|YP_219724.1| peptide deformylase [Chlamydophila abortus S26/3]
 gi|81312889|sp|Q5L6G8|DEF_CHLAB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62148006|emb|CAH63757.1| peptide deformylase [Chlamydophila abortus S26/3]
          Length = 184

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  P LRR +  I +I  +I  L  +M E M +  G+GLAA Q+G    L V+
Sbjct: 1   MIRELEYYGSPTLRRKAEAILEITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVSLFVM 60

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++      +      P V+INP +   S+D  + +EGCLSIP  RADV R   ITV+ +
Sbjct: 61  CVEGETEDGDLIFCDFPKVYINPVLSNVSEDLVLGREGCLSIPGLRADVYRPRSITVKAI 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167
           + + Q    + +G  A  + HE DHLNGIL+ID +   K        + K+ +
Sbjct: 121 NLDGQEFTEHLEGFPARIVMHENDHLNGILYIDKMEEPKDYKKFKSALEKIRR 173


>gi|282890597|ref|ZP_06299120.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499594|gb|EFB41890.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 177

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/164 (40%), Positives = 93/164 (56%), Gaps = 5/164 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ---- 64
           + +PILR+ + PIE+I+  I  L  +M+E M++T+GIGLAA QIG L  + V  +     
Sbjct: 8   YGNPILRKKAIPIERIDDSIRQLATDMIETMHATNGIGLAANQIGQLLSIFVTCVPIAQD 67

Query: 65  -DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                     VFINPKI+ +S +F V+ EGCLSIP   +DV R   I ++ MD +     
Sbjct: 68  DGTWIDGKDRVFINPKILAYSQEFQVFSEGCLSIPKLFSDVARPESIKIQAMDLDGNVFE 127

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               G  AT   HE DHLNG+LFID L R +R  I   + ++ +
Sbjct: 128 ETMTGYEATNFMHENDHLNGVLFIDRLHRTERKKIEPILQQIKK 171


>gi|56419706|ref|YP_147024.1| peptide deformylase [Geobacillus kaustophilus HTA426]
 gi|56379548|dbj|BAD75456.1| polypeptide deformylase [Geobacillus kaustophilus HTA426]
          Length = 157

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ P+PIL +   P+   +  +  L+D+M E M + DG+GLAA QIGV  ++ V
Sbjct: 1   MAVLSIVMHPNPILEQPCAPVTIFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R      INP +I    +  V  EGCLS P    +V R+ F+ VR  +   +
Sbjct: 61  VDVGDEHGRIE---LINPVVIEARGE-QVDVEGCLSFPGLFGEVPRAKFVKVRAQNRRGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A G LA  LQHE+DHL+G+LF   + R
Sbjct: 117 PFTLSATGFLARALQHEIDHLHGVLFTSKVIR 148


>gi|294631322|ref|ZP_06709882.1| peptide deformylase [Streptomyces sp. e14]
 gi|292834655|gb|EFF93004.1| peptide deformylase [Streptomyces sp. e14]
          Length = 216

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + +   ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  ASRPITVVGNPVLHKECKDVTEFGEELQQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCMDDEGVRHVGVVCNPKLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDER 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNAIKVRGTGYFARCLQHETDHLYGQLYIDRLSKRERKDALRQMAE 205


>gi|269797908|ref|YP_003311808.1| peptide deformylase [Veillonella parvula DSM 2008]
 gi|269094537|gb|ACZ24528.1| peptide deformylase [Veillonella parvula DSM 2008]
          Length = 162

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 94/154 (61%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    P+L++V+ P+E +N  +  LID+M E MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLDVVKAGHPVLKQVAEPVEHVNKKLRVLIDDMAETMYKTEGVGLAAPQVAVAKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D Q  +     +  INP+I T ++   V  EGCLS+P Y  DV+R   +TV+ +D + +
Sbjct: 61  VDDQSGSG---LIALINPEI-THAEGSQVGPEGCLSVPGYFGDVERFNKVTVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I A+G LA   QHE+DHL G LFI+  + L+
Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150


>gi|298491536|ref|YP_003721713.1| peptide deformylase ['Nostoc azollae' 0708]
 gi|298233454|gb|ADI64590.1| peptide deformylase ['Nostoc azollae' 0708]
          Length = 187

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 2/149 (1%)

Query: 5   PLVIF--PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           PL +    D +LR+ ++ + KI+ ++  L+  ML+ MYS DGIGLAA Q+G+  +L+VID
Sbjct: 16  PLRLHYLGDRVLRQPAKRVTKIDDELRQLVREMLQTMYSEDGIGLAAPQVGINKQLIVID 75

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            +        +V INP I   S +  V +EGCLSIP    DVKR   + + Y D   + +
Sbjct: 76  CEPDKPEAPALVLINPVIKQVSSELCVAEEGCLSIPKVYLDVKRPQVVEIAYKDEYGRPK 135

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            + A  LL  C+ HE+DHLNG+LF+D + 
Sbjct: 136 TLKAGDLLGRCILHEMDHLNGVLFVDRVE 164


>gi|210617214|ref|ZP_03291458.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787]
 gi|210149415|gb|EEA80424.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787]
          Length = 161

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 86/151 (56%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +V + +  +      LI++ML+ MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRKIREIGDDVLEKVCKEVTDMTDRTKVLIEDMLDTMYDAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P++ +NP+I+  + +    +EGCLS+P     V R  ++ V+ ++   +
Sbjct: 61  IDIGE-----GPIILVNPEILETAGE-QTGEEGCLSLPGKSGTVTRPNYVKVKALNEEME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +   +GLLA    HE+DHL+G L+++ + 
Sbjct: 115 EVVYEGEGLLARAFCHEIDHLDGHLYVEKVE 145


>gi|113868038|ref|YP_726527.1| peptide deformylase [Ralstonia eutropha H16]
 gi|113526814|emb|CAJ93159.1| polypeptide or peptide deformylase [Ralstonia eutropha H16]
          Length = 177

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L +V+RP+E+ N  ++  LI++M + M   +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP +   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNPRYPDAPTVPKTVLINPVLEMESDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGH 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D         A+G  A  +QHE DHL GIL+   +   ++   T+ +
Sbjct: 121 DLMGNRIERVAEGFHARVVQHECDHLQGILYPMRIKDFRQFGFTEVL 167


>gi|308063423|gb|ADO05310.1| peptide deformylase [Helicobacter pylori Sat464]
          Length = 175

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  IL+ +S+ +   +S +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILKTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKG-TIMYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169


>gi|317125290|ref|YP_004099402.1| peptide deformylase [Intrasporangium calvum DSM 43043]
 gi|315589378|gb|ADU48675.1| peptide deformylase [Intrasporangium calvum DSM 43043]
          Length = 215

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  +P+L R +  + + + ++  L+ +M E   + +G+GLAA QIGV  R+ +
Sbjct: 1   MAVRPIVISGEPVLHRSAALVTEFDDELRQLVGDMHETNDAANGVGLAAPQIGVGLRVFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             + +          INP + T        D     EGCLS+P     +KR+    V  +
Sbjct: 61  WKMDNEDGVPARGHIINPTVRTSRIPQERPDPREETEGCLSVPGESFPLKRAERAHVVGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D         A G  A C+QHE DHLNG L++D L   +     K + +
Sbjct: 121 DLEQNRVEFDATGWFARCMQHEYDHLNGTLYVDRLDDRQAKKARKAVKR 169


>gi|284929247|ref|YP_003421769.1| peptide deformylase [cyanobacterium UCYN-A]
 gi|284809691|gb|ADB95388.1| peptide deformylase [cyanobacterium UCYN-A]
          Length = 183

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 99/170 (58%), Gaps = 7/170 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D  LR+ ++ + KI+  I  L  +ML+ MYS++GIGLA+ Q+G+  +L+VID +
Sbjct: 14  DIHYLGDKDLRKSAKRVSKIDDSIRELARDMLQTMYSSNGIGLASTQVGIHKQLIVIDCE 73

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INPKI  +S +  V +EGCLSIP    DV R   I V + + N +   I
Sbjct: 74  PELSTNAPLILINPKINYYSQELCVMEEGCLSIPGVYFDVIRPEMIQVSFKNENGRPCQI 133

Query: 125 YADGLLATCLQHELDHLNGILFIDHL-------SRLKRDMITKKMSKLVQ 167
            A  LLA  +QHE+DHLNG++F+D +       ++L+    T++  K ++
Sbjct: 134 SATDLLARVIQHEIDHLNGVMFVDRVTNDLDLTTKLQEKGFTRESVKSLK 183


>gi|289449949|ref|YP_003475241.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184496|gb|ADC90921.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 160

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 7/164 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M  + +++  D  LR+ +RP++ I +  I  ++D+M++ +Y+T +G+GLAAVQ+G+L R+
Sbjct: 1   MAVREIIVDGDDRLRKKARPVDNIADPKIQQIVDDMIDTLYATGNGVGLAAVQVGILKRI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            VIDLQD    K   V+INP+II         QEGCLS+P +  +V R A +TVR  D N
Sbjct: 61  FVIDLQDGKGLK---VYINPEIIDRQGS-QCNQEGCLSLPGFWGEVIRPAKVTVRAFDRN 116

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDH-LSRLKRDMITKK 161
            +     A GL A C+ HE DHLNGILF D  +S  +     +K
Sbjct: 117 GKQFEQTATGLGAICISHETDHLNGILFKDLVISEEEAARFKQK 160


>gi|29829575|ref|NP_824209.1| polypeptide deformylase [Streptomyces avermitilis MA-4680]
 gi|39931079|sp|Q82IV0|DEF1_STRAW RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|29606683|dbj|BAC70744.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
          Length = 216

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +    +++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTDFGAELEQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D QD    ++  V  NPK++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCQDDEGTRHVGVVCNPKLVDLPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|158421732|ref|YP_001523024.1| peptide deformylase [Azorhizobium caulinodans ORS 571]
 gi|158328621|dbj|BAF86106.1| polypeptide deformylase [Azorhizobium caulinodans ORS 571]
          Length = 165

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 97/167 (58%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LV FPDP LR+ + P+   +  + +   ++L+ M +  GIG+     G++ RLV 
Sbjct: 1   MAVLDLVRFPDPRLRQPAEPVTVFDGALADRAQDLLDTMRAAPGIGITGPHAGLMIRLVA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L + A    P  ++NP+++  S +   + EG +S+P    +V+R A + V +   +  
Sbjct: 61  LELPETA----PAFYVNPRVLRASPEMGRHPEGSVSMPGVVEEVERPARVRVAFQGLDGT 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLL+ CLQHE+D L+GI +I  LSRLKR+ + KK  KL++
Sbjct: 117 GHEVEADGLLSVCLQHEIDQLDGIFWIQRLSRLKRERVVKKYEKLLK 163


>gi|242309635|ref|ZP_04808790.1| peptide deformylase [Helicobacter pullorum MIT 98-5489]
 gi|239523636|gb|EEQ63502.1| peptide deformylase [Helicobacter pullorum MIT 98-5489]
          Length = 169

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 107/169 (63%), Gaps = 4/169 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+P+LR++S+PIE  +  +  L+D M E M + +G+G++A+Q+    R ++I
Sbjct: 1   MMLEVITYPNPLLRQISKPIENFDESLHQLLDAMYETMLNKNGVGISAIQVAKPIRALLI 60

Query: 62  DLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            L D     H++N +  INP+II  + +  ++ EGCLS+P++  +VKR + + + Y +  
Sbjct: 61  CLPDEEGNQHKENLLEIINPEIIEKNGEI-LFNEGCLSVPEFYEEVKRYSSLKIHYQNRY 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            ++  + A+  LA  LQHE+DHLNGILFID LS +KR    K++ +  +
Sbjct: 120 GENLQLEANDYLAVALQHEIDHLNGILFIDKLSIIKRKKFEKELKQKRK 168


>gi|109947463|ref|YP_664691.1| peptide deformylase [Helicobacter acinonychis str. Sheeba]
 gi|122973308|sp|Q17XD4|DEF_HELAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|109714684|emb|CAJ99692.1| polypeptide deformylase [Helicobacter acinonychis str. Sheeba]
          Length = 175

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 105/170 (61%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P  ILR +S+ +   ++     +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYPSKILRTISKEVVSFDAKFHQQLDDMHETMIASEGIGLAAIQVGLPLRMLL 60

Query: 61  IDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +++EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPREDGVQHKEDCLEIINPKFIETKGSI-MFKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAKVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNK 169


>gi|311104085|ref|YP_003976938.1| peptide deformylase 1 [Achromobacter xylosoxidans A8]
 gi|310758774|gb|ADP14223.1| peptide deformylase 1 [Achromobacter xylosoxidans A8]
          Length = 177

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV+ P+E+ +  ++  LID+M E M +  G+GLAA QIGV  +LV+
Sbjct: 1   MIHTILKMGDPRLLRVAAPVERFDTPELHALIDDMFETMAAAQGVGLAAPQIGVDLQLVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       +  NP I   SD+     EGCLS+P  R  V R   I     
Sbjct: 61  FGFDRNERYPDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGLVPRYRRIRYSGR 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D   Q     ADG  A  +QHE DHL G L+   +    +   T+
Sbjct: 121 DPYGQLIEREADGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165


>gi|291536618|emb|CBL09730.1| peptide deformylase [Roseburia intestinalis M50/1]
          Length = 158

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+L +  R I ++   I  LID+ML+ MY  +G+GLA  Q+GVL R+VV
Sbjct: 1   MALRTIRIQGDPVLTKKCREINEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP I+  S +     EGCLS+P     V R  ++  R  D N +
Sbjct: 61  IDIGE-----GPVVMINPVILEKSGE-QTGDEGCLSLPGKAGTVTRPNYVKARAFDENME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              I    L+A  + HELDHL+G ++ +
Sbjct: 115 EYEIEGTELMARAICHELDHLDGHMYTE 142


>gi|146276207|ref|YP_001166366.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554448|gb|ABP69061.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 167

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+  + P++ +  +I  + D+M+E M +  G GLA  QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTAAAPVDAVTDEIHAIWDDMVETMDAMPGYGLAGPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D   +   +   NP+I+  S  F  ++EG  ++P   A + R   +TVR+++   + 
Sbjct: 61  DCSDSRGKA--IRLANPEILHASGQFREHEEGSPNLPGATAVISRPRAVTVRFLNTAGEM 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHLNG L+IDHLS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLNGKLYIDHLSALKRKMVIAKSEKYLR 164


>gi|307719714|ref|YP_003875246.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
 gi|306533439|gb|ADN02973.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
          Length = 163

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 4/156 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            L    D ILR+ +  + +I+  +  +++ M ++M+  +GIGLAA Q+G+  R  +  + 
Sbjct: 2   ELRYLGDEILRKRAVLVPEIDGRVARVVEGMFDLMHEANGIGLAAPQVGISQRFFICHVP 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +      P+VFINP+I   S + + ++EGCLSIP   ADV R A + V   +   +   +
Sbjct: 62  E----GEPLVFINPEITATSPELTTFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRM 117

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            ADG+LA  +QHE DHLNG+LF+D L   KR+ + +
Sbjct: 118 EADGMLARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153


>gi|218188726|gb|EEC71153.1| hypothetical protein OsI_02992 [Oryza sativa Indica Group]
          Length = 997

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 85/162 (52%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 797 VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 856

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP +   S    VY+E CLS P   A+V R   + +   D       + 
Sbjct: 857 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 916

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             GL A   QHE DHL GILF D +S    + + + +  L +
Sbjct: 917 LSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEK 958


>gi|111219523|ref|YP_710317.1| peptide deformylase 3 (PDF 3) (polypeptide deformylase 3) [Frankia
           alni ACN14a]
 gi|111147055|emb|CAJ58702.1| Peptide deformylase 3 (PDF 3) (Polypeptide deformylase 3) [Frankia
           alni ACN14a]
          Length = 224

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 4/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             + + +  +P+L R  R I +    ++  LID+M   MY  +G+GLAA QI V   L V
Sbjct: 40  TIRRITVVGEPVLHRPCRKITEFGTPELAALIDDMFATMYGAEGVGLAANQIDVDAALFV 99

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            D  D    ++     NP++             +EGCLS+P    +V R     VR  D 
Sbjct: 100 YDCTDEDGVRHVGHLANPELEESDPAERRLVKGEEGCLSVPGAYMEVARLERAAVRGQDA 159

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 +   G  A CLQHE DHL G L++D LS   R    K+M +  + 
Sbjct: 160 TGAPLRLEGTGYFARCLQHETDHLYGGLYLDRLSSRGRKKALKEMEERAEE 210


>gi|222618926|gb|EEE55058.1| hypothetical protein OsJ_02762 [Oryza sativa Japonica Group]
          Length = 267

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 86/162 (53%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 80  VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 139

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP +   S    VY+EGCLS P   A+V R   + +   D       + 
Sbjct: 140 VKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 199

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             GL A   QHE DHL GILF D +S    + + + +  L +
Sbjct: 200 LSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEK 241


>gi|237755423|ref|ZP_04584049.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692423|gb|EEP61405.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 177

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 8/172 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           + I+PDPIL+  ++ ++  +  +   I+ M E MY  +G+GLAA QIG+ Y+++VID   
Sbjct: 5   IRIWPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTSL 64

Query: 64  -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                ++       MV INPKI+    +     EGCLS P  +  + R+  + V   +  
Sbjct: 65  RENRSEEETEPPVKMVLINPKIVEKEGEVQST-EGCLSFPGVQITIPRAKRVKVVGKNEK 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +   I +   LA  LQHE+DHLNGI FI++LS LKR ++  K  K ++  +
Sbjct: 124 GEDVEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLKSLKELE 175


>gi|291300069|ref|YP_003511347.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
 gi|290569289|gb|ADD42254.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
          Length = 183

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +F DP+LR  +  ++  + +   L+ N+ + M    G GLAA Q+GV  R+  
Sbjct: 1   MSIVPIRLFGDPVLRTPADEVKTFDKEFRKLVRNLTDTMLDEGGAGLAAPQLGVGLRVFA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D           NP +    ++     EGCLSIP    D  R   +  +  +    
Sbjct: 61  FDVDDVIG-----HLANPVLEFPDEEEQDGPEGCLSIPGLYFDTVRRQNVIAKGYNEYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I   GL+A CLQHE DHL+GILF+D L   +R    K++       D
Sbjct: 116 PMQIVGTGLMARCLQHETDHLDGILFLDRLDPERRKAAMKEIRSAEWYND 165


>gi|307298449|ref|ZP_07578252.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915614|gb|EFN45998.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 163

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 5/163 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++   +PILR VS  +E  + ++   ++ + + MY  DG+GLAA Q+ +  RL V D  D
Sbjct: 3   VIYIGNPILRDVSEKVEVFDDELRQFVNELSKTMYVEDGVGLAAPQVAISRRLFVYDPGD 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                   V +NP+I+  SD+    +EGCLSIP   ADV R A + +RY D    +    
Sbjct: 63  -----GLRVVVNPEILFRSDEKVKIEEGCLSIPGIYADVVRPASVRIRYQDEYGHYHEDD 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A  +QHE DHL+GILF+D+LS  KR ++  K+ ++++ 
Sbjct: 118 LTDYPARIVQHETDHLDGILFVDYLSSAKRAILKPKLDQIIKE 160


>gi|254796760|ref|YP_003081596.1| peptide deformylase [Neorickettsia risticii str. Illinois]
 gi|254590005|gb|ACT69367.1| peptide deformylase [Neorickettsia risticii str. Illinois]
          Length = 205

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 13/170 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LVI PDPIL +VS  +  ++ +    +D+MLE MY   GIGLAAVQ+GVL R++V
Sbjct: 21  MALLKLVIEPDPILHKVSGNVVGVSDEKREFLDDMLETMYHYTGIGLAAVQVGVLERIIV 80

Query: 61  IDLQDHAH-------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +D+                     P   +NP+II FS +     EGCLS+P+   ++ R 
Sbjct: 81  VDVPPDKEWHSSPLNHVGYESSGGPYYLVNPEIIEFSRNLVSADEGCLSLPEQNYEIVRP 140

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
             + V+Y++ N +  ++ A+G LA C+QHE+DHL+G L++ HLS+LK D+
Sbjct: 141 DAVVVKYLNYNGEECLLKANGWLARCIQHEVDHLDGKLYVSHLSKLKYDL 190


>gi|300934519|ref|ZP_07149775.1| peptide deformylase [Corynebacterium resistens DSM 45100]
          Length = 163

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 7   VIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             F DP+LR V+ PI       S +  L+ +MLE M    G+GLAA Q+GV  R+ V D 
Sbjct: 2   RYFGDPVLRTVADPIAPAQVGESSVRTLVADMLETMDHYGGVGLAANQVGVTKRVFVYDC 61

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                       INP+     D+     EGCLS+P     V R+  + V  +  + +   
Sbjct: 62  DGDRG-----HIINPEWQRIGDEEQTGPEGCLSVPGIGGTVTRAMRVRVTGLTVDGEPID 116

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                LLA C+QHE DHLNGI+F+ HLS  +R    K++ +   
Sbjct: 117 REVTELLARCVQHETDHLNGIMFLKHLSSEERKEAMKEIRQAEW 160


>gi|302536804|ref|ZP_07289146.1| peptide deformylase [Streptomyces sp. C]
 gi|302445699|gb|EFL17515.1| peptide deformylase [Streptomyces sp. C]
          Length = 211

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R  + + +   ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 35  TSRPITVVGNPVLHRECKDVTEFGDELARLIDDMFASQKTAEGVGLAANQIGVDAKVFVY 94

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V +NPK++             EGCLS+P   A + R  +  V   D  
Sbjct: 95  DCPDDDGVRHTGVVVNPKLVELPAANRVLDDSNEGCLSVPTAYASLARPDYAEVTGQDAQ 154

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 155 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 200


>gi|167626939|ref|YP_001677439.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596940|gb|ABZ86938.1| Peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 172

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 96/169 (56%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P PIL+ +++ +  E+I+ D    I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPILKEIAKEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++     +     +  INPKII  S    + +EGCLS P   A + R+  + ++ ++   
Sbjct: 61  IMYDNLESETPKIITIINPKIIDQSG-KIIDEEGCLSFPGVSAKINRATRVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q   +  D  LA C+QHE+DHLNG+ F DHL  LKR MI KK  KL+Q 
Sbjct: 120 QEIEVEKDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQE 168


>gi|313888509|ref|ZP_07822176.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845538|gb|EFR32932.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 163

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 85/153 (55%), Gaps = 5/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR+ S+ +   N  +  LID+M E M    G+GLAA QIG+L R++V
Sbjct: 1   MAIRKIRTDGDPILRKKSKVVTNYNDRLKLLIDDMYETMDLAPGVGLAAPQIGILKRVIV 60

Query: 61  ID----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +D      D   +      INP+II    +     EGCLS+P  +  VKR+  I V+Y D
Sbjct: 61  VDNREEDNDEGEKPMRFYMINPEIIEKDGEEVSM-EGCLSVPGKQGTVKRAKHIKVKYND 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
              Q +++ A+  LA  +QHE DHL+GIL+ D 
Sbjct: 120 LEGQEKLMEAEDFLARIIQHETDHLDGILYTDK 152


>gi|332670777|ref|YP_004453785.1| peptide deformylase [Cellulomonas fimi ATCC 484]
 gi|332339815|gb|AEE46398.1| peptide deformylase [Cellulomonas fimi ATCC 484]
          Length = 166

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR    PI  I+  + +L+D++LE +      GLAA QIGV  R   
Sbjct: 5   MAMREIRTVGDPVLRTPCDPITTIDDRVRSLVDDLLETVDHEGRAGLAANQIGVGLRAFS 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ D          +NP I+  S D++    EGCLS+P      +R+ +  V   D + 
Sbjct: 65  WNIDDEIGY-----VLNPVIVELSEDEYQDGDEGCLSVPGLWYPTRRAWYARVAGTDLDG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  ++    L+A CLQHE+DHL+G+L++D L R  R    + + +
Sbjct: 120 KEVVVEGTELMARCLQHEVDHLDGMLYLDRLERSVRKKAMRAIRE 164


>gi|188997413|ref|YP_001931664.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932480|gb|ACD67110.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 177

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 8/172 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           +  +PDPIL+  ++ ++  +  +   I+ M E MY  +G+GLAA QIG+ Y+++VID   
Sbjct: 5   IRTWPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTSL 64

Query: 64  -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                ++ A     MV INPKI+    +     EGCLS P  +  + R+  + V   +  
Sbjct: 65  REKRSEEEAEPPVKMVLINPKIVEKEGEVQST-EGCLSFPGVQITIPRAKRVKVVGKNEK 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +   I +   LA  LQHE+DHLNGI FI++LS LKR ++  K  K ++  +
Sbjct: 124 GEDVEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLKSLKELE 175


>gi|269794722|ref|YP_003314177.1| peptide deformylase [Sanguibacter keddieii DSM 10542]
 gi|269096907|gb|ACZ21343.1| peptide deformylase [Sanguibacter keddieii DSM 10542]
          Length = 162

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I  I+  +  L++++L+ +      GLAA QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEITVIDDRVRGLVEDLLDTVNDDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ D          +NPKI+  S D++    EGCLS+P+     +R+ +  V   D + 
Sbjct: 61  WNIDDEIGY-----VLNPKIVELSEDEYQDGDEGCLSVPNLWYPTERAWYARVEGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              ++    L+A CLQHE+DHL+G L++D L +  R    + + +
Sbjct: 116 NKVVVEGTELMARCLQHEVDHLDGYLYLDRLDKAVRKKAMRALRE 160


>gi|163855075|ref|YP_001629373.1| peptide deformylase [Bordetella petrii DSM 12804]
 gi|163258803|emb|CAP41102.1| peptide deformylase [Bordetella petrii]
          Length = 177

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV++P+ + +  ++  L+ +M E M    G+GLAA QIGV  +LV+
Sbjct: 1   MIHAILKMGDPRLLRVAQPVGQFDTPELHELVADMFETMVHAKGVGLAAPQIGVDLQLVI 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +       A      V  NP I   SD+     EGCLS+P  R  V R   I  R  
Sbjct: 61  FGFEHNERYPDAPPVPLTVLCNPVITPRSDEREDGWEGCLSVPGLRGLVPRYRHIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D + Q     A+G  A  +QHE DHL G L+   +    +   T+ +
Sbjct: 121 DPHGQPIEREAEGFHARVVQHECDHLIGRLYPSRIEDFSKFGFTEVL 167


>gi|330817443|ref|YP_004361148.1| Peptide deformylase [Burkholderia gladioli BSR3]
 gi|327369836|gb|AEA61192.1| Peptide deformylase [Burkholderia gladioli BSR3]
          Length = 177

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V++P+E  +  ++  L+ +M E M+  +G GLAA QIGV  +L++
Sbjct: 1   MIREILRMGDPRLLEVAKPVEAFDTPELHELVADMFETMHHANGAGLAAPQIGVGLQLII 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               ++A   +       V INP +     D     EGCLS+P  R  V R + +     
Sbjct: 61  FGFGNNARYPDAPPVPETVLINPSVEYLPPDMEEGWEGCLSVPGMRGVVSRYSKVHYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +     A+G  A  +QHE DHL G L+   ++   +    + +
Sbjct: 121 DQYGKRIDRIAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGFAEVL 167


>gi|268589951|ref|ZP_06124172.1| peptide deformylase [Providencia rettgeri DSM 1131]
 gi|291314667|gb|EFE55120.1| peptide deformylase [Providencia rettgeri DSM 1131]
          Length = 169

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + ++  PD  LR    P+    + +  LID++L+ MYST +GIGLAA QI     ++
Sbjct: 1   MAVREIIEIPDERLRIKCSPVTDF-AAVQTLIDDLLDTMYSTDNGIGLAATQIAETKSIM 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +  +R  PMVF+NP+I+  S+  + YQEGCLS+P+  ADV R   + V+  D + 
Sbjct: 60  VIDISE--NRDEPMVFVNPEIVE-SEGETSYQEGCLSVPEIYADVDRFLRVKVKAYDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
           +   + +D  LA  +QHE+DHL+G +F+DHLS LKR+M
Sbjct: 117 KAFEVDSDEFLAIVMQHEIDHLHGKVFLDHLSPLKRNM 154


>gi|163842029|ref|YP_001626434.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
 gi|162955505|gb|ABY25020.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
          Length = 190

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI  +P+L R +  ++  +  +  L+ +M E     +G GLAA QIG+  R+ V
Sbjct: 1   MSVHPIVIKGEPVLHRRATEVKDFDDALRTLVVDMHETNAVANGAGLAAPQIGIGLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII--TFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++        V +NP ++    S    D     EGCLS+P     +KR+ ++ V   
Sbjct: 61  YAMENDDDVPAKGVLVNPTLVLGKVSGTAPDPDEESEGCLSVPGEHFPLKRAEWVRVSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D         A G  A C+QHE DHL+G L++D L     D   +K  ++ + +
Sbjct: 121 DEFGNPVQFEATGWFARCMQHEYDHLDGKLYVDRLV----DRYQRKARRIAKDK 170


>gi|319763298|ref|YP_004127235.1| peptide deformylase [Alicycliphilus denitrificans BC]
 gi|330825493|ref|YP_004388796.1| peptide deformylase [Alicycliphilus denitrificans K601]
 gi|317117859|gb|ADV00348.1| peptide deformylase [Alicycliphilus denitrificans BC]
 gi|329310865|gb|AEB85280.1| peptide deformylase [Alicycliphilus denitrificans K601]
          Length = 179

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M ++ ++   DP L RV+RP+ + +  ++  L+ ++L+ M++ +G GLAA QIGV  ++V
Sbjct: 1   MTQRTILKMGDPRLLRVARPVTRFDTDELHGLLADLLDTMHAANGAGLAAPQIGVDLQVV 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V            A      V INP +    D+ S+  EGCLS+P  R  V R   +   
Sbjct: 61  VFGSGAPNPRYPDAPVVPRTVLINPVVTPIGDEESLDWEGCLSVPGMRGMVPRWQTVRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   +       G  A  +QHE DHL G L+   +    +   T+ +
Sbjct: 121 GFDVRGEPIDRTVSGFHARVVQHECDHLWGKLYPMRMRDFSQFGFTEVL 169


>gi|158337779|ref|YP_001518955.1| peptide deformylase [Acaryochloris marina MBIC11017]
 gi|158308020|gb|ABW29637.1| peptide deformylase [Acaryochloris marina MBIC11017]
          Length = 189

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 90/146 (61%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+ ++ + K++ +I  L   ML+ MYS DGIGLAA Q+ V  +L+V+D   
Sbjct: 19  IHTLGDRVLRQSAKRVSKVDDEIRELARQMLQTMYSADGIGLAAPQVAVGKQLIVVDTDP 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P++ +NPKI   SDD ++ QEGCLSIP    DV+R A I V Y D   + Q+I 
Sbjct: 79  EEPANQPIILLNPKIRRHSDDLALGQEGCLSIPGVYLDVRRPAQIEVAYKDEQGRPQVIV 138

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
           A  LLA  +QHE+DHL G++F+D + 
Sbjct: 139 ATDLLARVIQHEMDHLTGVMFVDRVE 164


>gi|260588060|ref|ZP_05853973.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|331082371|ref|ZP_08331497.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260541587|gb|EEX22156.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|330400857|gb|EGG80458.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 159

 Score =  183 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 85/151 (56%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D IL +  R +EK+   I  LID+M + MY   G+GLAA Q+G+L ++VV
Sbjct: 1   MALRQIRTQGDDILTKECRKVEKMTPKIRELIDDMFDTMYEAYGVGLAAPQVGILKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       ++P+V INP+II  S      +EGCLS+P     V R  ++ VR  D + Q
Sbjct: 61  IDTTG----EDPIVLINPEIIETSGS-QTGEEGCLSVPGMSGVVTRPNYVKVRAFDEDMQ 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             I+  + LLA  + HE DHL+G L+ + + 
Sbjct: 116 EFILEGEELLARAICHETDHLHGRLYTELVE 146


>gi|34580422|ref|ZP_00141902.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|229586763|ref|YP_002845264.1| Polypeptide deformylase [Rickettsia africae ESF-5]
 gi|28261807|gb|EAA25311.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|228021813|gb|ACP53521.1| Polypeptide deformylase [Rickettsia africae ESF-5]
          Length = 183

 Score =  183 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/163 (39%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  N-NKSSPIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG  F+D+LS+LKRD + KKM K ++L
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKKMLKHIKL 171


>gi|326511653|dbj|BAJ91971.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 270

 Score =  183 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 90/162 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDP+LR  ++ I   ++++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 81  VVQYPDPVLRARNKRINTFDNNLRSLADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 140

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP +  FS   SVY+EGCLS P   A+V R   + +   D +     + 
Sbjct: 141 VKGEGEEIVLVNPVVYKFSKRLSVYEEGCLSFPGIYANVLRPDTVKIDAQDASGAKIKVK 200

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              L A   QHE DHL GILF D ++    + I +++  L +
Sbjct: 201 LSELSARVFQHEFDHLQGILFFDRMTMDVVESIHEQLKSLEE 242


>gi|229826165|ref|ZP_04452234.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC
           49176]
 gi|229789035|gb|EEP25149.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC
           49176]
          Length = 175

 Score =  183 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 3/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL + +R I++ +  I  LID+MLE MY  DG+GLAA Q+GVL RL V
Sbjct: 1   MALRNIRIVGDEILNKRAREIKENSDKIQTLIDDMLETMYDADGVGLAAPQVGVLKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R  P VFINP+I+  S +     EGCLS+P     V R  ++ ++ ++   +
Sbjct: 61  IDCSE--DRNEPFVFINPEILETSGE-QTGSEGCLSVPGKAGIVTRPEYVKMKALNREFE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             II  +GL A  + HE +HL+G ++ + +
Sbjct: 118 EYIIEGEGLFARAMVHENEHLDGHIYTEKV 147


>gi|300775194|ref|ZP_07085056.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
 gi|300505934|gb|EFK37070.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
          Length = 190

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 70/161 (43%), Positives = 90/161 (55%), Gaps = 11/161 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  F DP+LR+V + I+K    +  LIDNM E MYS +GIGLAA QIG+  RL VI
Sbjct: 1   MILPIRAFGDPVLRKVGKDIDKDYPGLQELIDNMFETMYSANGIGLAAPQIGLDIRLFVI 60

Query: 62  DLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D+   A  ++             VFIN +I+  S +   + EGCLSIPD R DVKR   I
Sbjct: 61  DVTPLAEDEDYEDIKDELAEFKKVFINAQILEESGEEWKFNEGCLSIPDVREDVKRKGTI 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + Y D N          + A  +QHE DH+ GILF DHLS
Sbjct: 121 VIEYYDENFVKHTETFSDIRARVIQHEYDHIEGILFTDHLS 161


>gi|300741742|ref|ZP_07071763.1| peptide deformylase [Rothia dentocariosa M567]
 gi|300380927|gb|EFJ77489.1| peptide deformylase [Rothia dentocariosa M567]
          Length = 190

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR    PI   + ++  LID+ML+ MY  +G+GLA  QIG+  ++  
Sbjct: 1   MTILSIRTVGDPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          INP +     +     EGCLS+P  ++D  R  +  VR +D   +
Sbjct: 61  FGGIDDRE----GYIINPVL-ETGTEPQEGGEGCLSVPGMKSDTPRMNWARVRGVDKMGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++  +GL A  LQHE DHL+G LFID L    R  + + +  
Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRKRVMRTIRA 159


>gi|188585959|ref|YP_001917504.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229487487|sp|B2A2K1|DEF_NATTJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|179350646|gb|ACB84916.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 156

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 93/156 (59%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +    DP+L+R ++ +  I+  +  L+ NML+ MY  +GIGLAA QIG+  R++V
Sbjct: 1   MAIKKIRTNDDPVLKRKAKKVTNIDDRLERLLTNMLDTMYEAEGIGLAAPQIGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +    +     INP+I+  SD+     EGCLS P  +  V R   +TV+ ++   +
Sbjct: 61  VDIGEDEIYQ----LINPEIVDTSDEQEKALEGCLSYPGLQGRVTRPVKVTVKALNPQEE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             II A+GLLA  LQHE+DHL+GI FID    + R+
Sbjct: 117 EMIIEAEGLLARALQHEIDHLDGITFIDRAEEVFRE 152


>gi|298247409|ref|ZP_06971214.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
 gi|297550068|gb|EFH83934.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
          Length = 172

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 3/153 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+  DPILR+ ++ I + ++ +  L+ +M E M++ DG GLAA QIG+  RL V
Sbjct: 1   MSLRNIVMLGDPILRQKAKRIHRFDASLRKLVKDMFETMHANDGAGLAAPQIGLSLRLFV 60

Query: 61  IDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDCN 118
           ++L+D    K+  +   NP+II    +     +GCLSIP Y   +V+R+  + V+  D N
Sbjct: 61  VELEDPETEKHYKVAMANPEIIKTEGE-QTGLDGCLSIPGYYGVNVRRANKVIVKGQDLN 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +   + A+G  A  LQHE+DHLNG+LFID L 
Sbjct: 120 GKPMKVMAEGYYAWALQHEIDHLNGVLFIDLLD 152


>gi|182677516|ref|YP_001831662.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633399|gb|ACB94173.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 165

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 100/169 (59%), Gaps = 4/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FPDP L   ++ +E  +  +  L D+++E +++  GIG+ A  IGV  RLV 
Sbjct: 1   MAVRPVIRFPDPRLSMAAQKVEHFDETLRTLADDLVESLHAAHGIGITAPHIGVPARLVA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L  +  R    +++NP+II  SD    +QEG +S+P     V+R A I VRY D +  
Sbjct: 61  LELTPNQTR----LYVNPEIIWSSDTKIRHQEGSVSMPGVTEIVERCAEIHVRYQDLDGS 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             I  ADG LA C QHE+D L+G+ +I  LSRLKR+ + K+  KL   R
Sbjct: 117 VHIEKADGFLAICHQHEIDQLDGLFWIQRLSRLKRERVIKRYEKLASDR 165


>gi|282889627|ref|ZP_06298167.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500454|gb|EFB42733.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 178

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 100/172 (58%), Gaps = 6/172 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ PL  + DPILR+    +E+I+S +  L+++M+E + +  GIGLAA Q+     L + 
Sbjct: 1   MQLPLAFYGDPILRKKCARVEQIDSQLKQLVNDMVETLEAHRGIGLAAPQVHHELNLFIT 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +            N  VF+NPKI+ +S++ + Y EGCLSIP+  A V+R   ITV+Y D
Sbjct: 61  KVPIRYKNGKEDSGNLHVFVNPKILAYSEEKNRYTEGCLSIPNVYAPVERPLSITVQYTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSKLVQ 167
            + +  +    GL A C+ HE DH+NG+LFID + +  +R  +   + ++ +
Sbjct: 121 LDGKTCVEDFSGLEARCILHENDHINGVLFIDRIKKGNERKQLDPLLKQIKK 172


>gi|61679585|pdb|1Y6H|A Chain A, Crystal Structure Of Lipdf
 gi|61679586|pdb|1Y6H|B Chain B, Crystal Structure Of Lipdf
 gi|75765202|pdb|1SV2|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.5
 gi|75765203|pdb|1SV2|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.5
 gi|75765298|pdb|1VEV|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph6.5
 gi|75765299|pdb|1VEV|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph6.5
 gi|75765300|pdb|1VEY|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.0
 gi|75765301|pdb|1VEY|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans (Lipdf) At Ph7.0
 gi|75765302|pdb|1VEZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans(Lipdf) At Ph8.0
 gi|75765303|pdb|1VEZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans(Lipdf) At Ph8.0
          Length = 177

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
            + ++   DPILR++S P+ +      +   LI +M + M   +G+GLAA QIG+L ++V
Sbjct: 2   VRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIV 61

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           V+  +D+            + +NP I   + D S + EGCLS+P  R  V+R   I +++
Sbjct: 62  VVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQW 121

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           MD          DG  A   QHE DHL GIL++D L   K
Sbjct: 122 MDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161


>gi|149922552|ref|ZP_01910982.1| peptide deformylase [Plesiocystis pacifica SIR-1]
 gi|149816579|gb|EDM76074.1| peptide deformylase [Plesiocystis pacifica SIR-1]
          Length = 177

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +PDP LR  +  +  +N +I +L+ +M + MY+ +  G+AA+Q+G L R+ +
Sbjct: 1   MAVLEIVKYPDPRLREDTFDVADVNDEIRSLVRDMTDTMYALNAAGIAAIQVGRLERIFL 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID  +       +P+VFINP+++       V +EGCLS PD   DVKR  +  VR +D N
Sbjct: 61  IDGKVAGGDENSDPLVFINPEVVETGKGQVVAEEGCLSFPDVFVDVKRPRWAKVRALDVN 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +   +  D L    LQHE DHL G L ID +  +K++MI +KM + 
Sbjct: 121 GESFEVDGDELFGRALQHEHDHLTGKLMIDLVGMVKKEMIKRKMKRW 167


>gi|168182587|ref|ZP_02617251.1| peptide deformylase [Clostridium botulinum Bf]
 gi|237795949|ref|YP_002863501.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|182674255|gb|EDT86216.1| peptide deformylase [Clostridium botulinum Bf]
 gi|229263426|gb|ACQ54459.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 147

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 94/150 (62%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR IEKI+  I+ L+++M+E MYS +G+GLAA Q+G+L R VV
Sbjct: 1   MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II    +     EGCLS+P  + +V+R   + V+ ++   +
Sbjct: 61  IDVGE-----GLIKLINPEIIETEGN-QKDVEGCLSVPGEQGEVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++  +GLLA    HE+DHL+G+LF+D +
Sbjct: 115 EIVLEGEGLLARAFCHEIDHLDGVLFVDKV 144


>gi|115438779|ref|NP_001043669.1| Os01g0637600 [Oryza sativa Japonica Group]
 gi|75251983|sp|Q5VNN5|DEF1B_ORYSJ RecName: Full=Peptide deformylase 1B, chloroplastic; Short=OsPDF1B;
           Short=PDF 1B; Flags: Precursor
 gi|55297005|dbj|BAD68576.1| putative polygalacturonase [Oryza sativa Japonica Group]
 gi|55297594|dbj|BAD68940.1| putative polygalacturonase [Oryza sativa Japonica Group]
 gi|113533200|dbj|BAF05583.1| Os01g0637600 [Oryza sativa Japonica Group]
 gi|164633054|gb|ABY64740.1| peptide deformylase 1B1 [Oryza sativa Japonica Group]
 gi|215741408|dbj|BAG97903.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 269

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 86/162 (53%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 80  VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 139

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP +   S    VY+EGCLS P   A+V R   + +   D       + 
Sbjct: 140 VKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 199

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             GL A   QHE DHL GILF D +S    + + + +  L +
Sbjct: 200 LSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEK 241


>gi|260437318|ref|ZP_05791134.1| peptide deformylase [Butyrivibrio crossotus DSM 2876]
 gi|292810230|gb|EFF69435.1| peptide deformylase [Butyrivibrio crossotus DSM 2876]
          Length = 168

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DPILR+V +P+++I      L+ +ML+ MY  +G+GLAA Q+G+L R+VV
Sbjct: 11  MALRNIRINDDPILRKVCKPVQEITKKTEELVGDMLDTMYEANGVGLAAPQVGILKRIVV 70

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D      P++ INP+I+  S      QEGCLSIP     V R  ++  +  D    
Sbjct: 71  IDIGD-----GPIIMINPEILETSGS-QTGQEGCLSIPGKAGIVTRPNYVKAKAYDLQMN 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  + LLA  + HEL HL+G L+IDH+ 
Sbjct: 125 EYTIEGEELLARAICHELGHLDGDLYIDHVE 155


>gi|332559342|ref|ZP_08413664.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
 gi|332277054|gb|EGJ22369.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
          Length = 163

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +     E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAVLPILRWPDPRLSQACTAAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++      EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q  +  G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|253580144|ref|ZP_04857411.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848663|gb|EES76626.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA]
          Length = 158

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L +VSRP+EK+   I +LI +MLE MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MALRKIRLQGDEVLAKVSRPVEKMTPRIHDLIGDMLETMYDAMGVGLAAPQVGMLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S +     EGCLS+P     V R  ++ V+ +D +  
Sbjct: 61  IDIGE-----GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKALDEDMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                 +GLLA    HE+DHL+G ++ + + 
Sbjct: 115 EVEYEGEGLLARAFCHEIDHLDGHMYTELVE 145


>gi|269958379|ref|YP_003328166.1| peptide deformylase [Anaplasma centrale str. Israel]
 gi|269848208|gb|ACZ48852.1| peptide deformylase [Anaplasma centrale str. Israel]
          Length = 199

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 104/179 (58%), Gaps = 17/179 (9%)

Query: 3   KKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             PLV  PD  L   S  +  +     +  L ++ML+ MY   GIGLAAVQ+GV  R+ V
Sbjct: 14  VLPLVTLPDSRLSLCSEEVHADDFGQQLETLANDMLDTMYHNKGIGLAAVQVGVHKRIFV 73

Query: 61  IDLQDHAHRKN---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           +DL+  + R                 P V +NP I+  S+     +EGCLS+PDYR  V+
Sbjct: 74  VDLEYGSDRYEVPRDDGAGEFRATCGPTVVVNPVIVEESERLVAMEEGCLSVPDYRETVR 133

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           R   I V+Y+D N + + I A GLLA CLQHELDHLNG++F+  +S+LKRDM+ +K+ +
Sbjct: 134 RPESIVVQYVDLNRRQKYIKACGLLARCLQHELDHLNGVVFLQRISKLKRDMVMEKIRR 192


>gi|168186792|ref|ZP_02621427.1| peptide deformylase [Clostridium botulinum C str. Eklund]
 gi|169295112|gb|EDS77245.1| peptide deformylase [Clostridium botulinum C str. Eklund]
          Length = 150

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 91/154 (59%), Gaps = 6/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  R + +I+  I+ LI++M E MY  DG+GLAA Q+G+L RLVV
Sbjct: 1   MALRNIRVDKDAILRKNCREVGEIDERILTLIEDMKETMYEADGVGLAAPQVGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II  S+      EGCLS+P  +  V R   +T + ++   +
Sbjct: 61  IDVGE-----GPITLINPEIIE-SEGSQTDYEGCLSLPGKQGKVTRPYKVTAKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I  +GLLA  + HELDHL+G LFID +   K
Sbjct: 115 QVKIKGEGLLARAICHELDHLDGTLFIDKVIEEK 148


>gi|23010332|ref|ZP_00051057.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 164

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 5/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   PDP+LR     I  I+  + +L+ +++E +      GLAA QIGV  R   
Sbjct: 4   MAMREIRTIPDPVLRTPCDEITTIDDRVRSLVADLVETVDHEGRAGLAANQIGVNLRAFS 63

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D          +NP+I+  SDD+    EGCLS+PD     +R+ +  V   D +  
Sbjct: 64  WNIDDEIGY-----VLNPRIVELSDDYQDGDEGCLSVPDLWYPTRRAWYARVVGTDLDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             ++    L+A CLQH+ DHL+G+L++D L R  R    +++ + +
Sbjct: 119 EVVVEGTELMARCLQHKCDHLDGMLYLDRLDRSVRKKAMRELREHL 164


>gi|257414230|ref|ZP_04745678.2| peptide deformylase [Roseburia intestinalis L1-82]
 gi|257200762|gb|EEU99046.1| peptide deformylase [Roseburia intestinalis L1-82]
 gi|291541040|emb|CBL14151.1| peptide deformylase [Roseburia intestinalis XB6B4]
          Length = 163

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+L +  R I ++   I  LID+ML+ MY  +G+GLA  Q+GVL R+VV
Sbjct: 6   MALRTIRIQGDPVLTKKCREITEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP I+  S +     EGCLS+P     V R  ++     D N +
Sbjct: 66  IDIGE-----GPVVMINPVILEKSGE-QTGDEGCLSLPGKAGTVTRPNYVKAHAFDENME 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              I    L+A  + HELDHL+G ++ +
Sbjct: 120 EYEIEGTELMARAICHELDHLDGHMYTE 147


>gi|307155367|ref|YP_003890751.1| peptide deformylase [Cyanothece sp. PCC 7822]
 gi|306985595|gb|ADN17476.1| peptide deformylase [Cyanothece sp. PCC 7822]
          Length = 175

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 7/173 (4%)

Query: 1   MVKK-PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M ++  +    +PILR+ ++P+E I ++ I  LID+++    S +G+G+AA Q+   YR+
Sbjct: 1   MAEQLEIAQLGNPILRQNAQPVEDITDTAIQQLIDSLIATAASANGVGIAAPQVSQSYRV 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++  +      N     P   INPKII +S +     EGCLS+P  R  V R   ITV 
Sbjct: 61  FIVASRPSPRYPNAPEMVPTAMINPKIIAYSAERVKGWEGCLSVPGVRGLVPRYQAITVE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Y+D     Q       +A   QHELDHL+G++F+D L   +     ++  K++
Sbjct: 121 YLDRQGNLQRQEFTDFVARIFQHELDHLDGMVFVDRLESTRDLYTEQEYQKII 173


>gi|254409726|ref|ZP_05023507.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
 gi|196183723|gb|EDX78706.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
          Length = 190

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 60/147 (40%), Positives = 87/147 (59%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ ++ + K++  I  L   ML+ MYS DGIGLAA Q+GV  +++VID +
Sbjct: 20  EIHYLGDRVLRQPAKRVAKVDQSIRQLAHQMLQTMYSADGIGLAAPQVGVNKQIIVIDCE 79

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INP I  F       QEGCLS+P    DVKR   + V Y D N + Q +
Sbjct: 80  PDNPENPPLILINPTIKRFGQSICDAQEGCLSVPGVYLDVKRPVEVEVAYKDENGRPQRL 139

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
            ADGLL+  +QHE+DHL G++F+D + 
Sbjct: 140 KADGLLSRAIQHEMDHLTGVMFVDRVE 166


>gi|312127907|ref|YP_003992781.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777926|gb|ADQ07412.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108]
          Length = 166

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+I       +V  EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGA-----IELVNPEIEQVEGS-AVDVEGCLSVPNVWGEVERPQKVVVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+GLLA  + HE+DHL+GILF+D + R 
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147


>gi|27904914|ref|NP_778040.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29611708|sp|P59493|DEF_BUCBP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|27904312|gb|AAO27145.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 160

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 66/161 (40%), Positives = 98/161 (60%), Gaps = 3/161 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++PI KI++ I N+I NM + MY  +GIGLAA Q+ +  +++V
Sbjct: 1   MSVLKILKYPDDRLRIIAKPISKIDTKIHNIIINMFDTMYYENGIGLAATQVNIPLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID        +P+V INPKI   S   +  QEGCLSIP+Y+A++ RS  ITV  ++   +
Sbjct: 61  ID--KIEELNHPLVLINPKITKRSG-LTSIQEGCLSIPNYQAEISRSKKITVTALNYFGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              +     L+ C+QHE+DHL G L ID+LS L    + KK
Sbjct: 118 RIKLKTSSTLSICIQHEIDHLIGKLLIDYLSNLTNLKLLKK 158


>gi|327398774|ref|YP_004339643.1| peptide deformylase [Hippea maritima DSM 10411]
 gi|327181403|gb|AEA33584.1| Peptide deformylase [Hippea maritima DSM 10411]
          Length = 168

 Score =  183 bits (465), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + ++PD ILR+ ++ +EKI+  I++L++ M E MY  +GIGLAA Q+G+  +LVVIDL+
Sbjct: 2   EVRVYPDGILRKKAKDVEKIDDRIVDLLNQMRETMYKFNGIGLAAEQVGLQEKLVVIDLR 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK-RSAFITVRYMDCNAQHQI 123
               +  P+  INP II     F  ++EGCLS+P Y   VK R  +I V+Y+D N   QI
Sbjct: 62  P-DGKNQPIELINPVIIASEGIFEEHEEGCLSVPGYYDVVKDRKKWIKVKYLDRNENEQI 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +  D  L+  +QHE+DHLNG LFIDHL   +++   K+  K  +  
Sbjct: 121 LETDEFLSVVIQHEIDHLNGKLFIDHLPPTRKEFFKKQWKKRQKEE 166


>gi|83855043|ref|ZP_00948573.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
 gi|83842886|gb|EAP82053.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
          Length = 155

 Score =  183 bits (465), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +PD  L  V  P+     +I  LI +M + MY+  G GLAA Q+G   R+ V
Sbjct: 1   MSVLDIVTWPDARLTAVCAPVATRTPEIDQLIADMFDTMYAAPGRGLAAPQVGRTERIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D         P+  INP+I++ SD  ++ +EGCLSIP    D+ R+  +T+R+ D +  
Sbjct: 61  FDAGWKEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADG- 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
                  G  A  +QHE DHL+GI+  D +
Sbjct: 120 THERKFAGAEAVIVQHEYDHLDGIVIYDRV 149


>gi|220907940|ref|YP_002483251.1| peptide deformylase [Cyanothece sp. PCC 7425]
 gi|219864551|gb|ACL44890.1| peptide deformylase [Cyanothece sp. PCC 7425]
          Length = 188

 Score =  183 bits (465), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 62/148 (41%), Positives = 92/148 (62%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+  + I ++N++   L   ML+ MYS DGIGLAA Q+GV  +L+V+D+  
Sbjct: 19  IHYLGDRVLRQPCKRISQVNNETRELARTMLQTMYSADGIGLAAPQVGVNKQLIVVDIHP 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P++ +NP I  FS + S+ QEGCLSIP    DVKR   I V Y D   + Q++Y
Sbjct: 79  DEAANPPLILVNPVIREFSPEVSLGQEGCLSIPGVYLDVKRPEMIEVAYKDEQGRPQVLY 138

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153
           A GLL+  +QHE+DHL G++F+D +  +
Sbjct: 139 ASGLLSRAIQHEIDHLGGVMFVDRVENM 166


>gi|118137648|pdb|2EW5|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In
           Complex With Inhibitor
 gi|118137649|pdb|2EW6|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In
           Complex With Inhibitor
 gi|118137650|pdb|2EW7|A Chain A, Crystal Structure Of Helicobacter Pylori Peptide
           Deformylase
          Length = 181

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 104/167 (62%), Gaps = 4/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I
Sbjct: 1   ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLII 60

Query: 62  DLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  
Sbjct: 61  NLPQEDGVQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRF 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L
Sbjct: 120 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 166


>gi|254384297|ref|ZP_04999640.1| peptide deformylase 2 [Streptomyces sp. Mg1]
 gi|194343185|gb|EDX24151.1| peptide deformylase 2 [Streptomyces sp. Mg1]
          Length = 185

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 73/149 (48%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+L      + +    +  LI++M   MY+ +G+GLAA QIGV  R+ V D
Sbjct: 13  VRTMSLLGDPVLHSACAEVTEFGPVLDRLIEDMFATMYAAEGVGLAANQIGVGQRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++    D     EGCLS+P   A   R     V  +  +    
Sbjct: 73  CPDDDDVRHVGHIVNPRLVAADGDEIRGPEGCLSLPGLEAGTDRFDRAVVEGVTSDGAPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
            +   G  A CLQHE DHL+G ++ D ++
Sbjct: 133 RVEGTGFFARCLQHECDHLDGTVYADRVT 161


>gi|313113575|ref|ZP_07799163.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624090|gb|EFQ07457.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 178

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +V RP+   +  +  L+D+M E M + DG+GLA  Q+G+L RL V
Sbjct: 1   MAIRNIVKEGDPILNKVCRPVTTFDDRLATLLDDMHETMIAADGVGLAGPQVGMLRRLFV 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +     A  + P       + F+NP+I+  S++     EGCLS P +   V R A + VR
Sbjct: 61  VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPAAVKVR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
             D + +   + A+ LL  C+QHE DHL+GI  
Sbjct: 121 AQDRHGEWFELEAENLLGRCIQHENDHLDGITI 153


>gi|291547147|emb|CBL20255.1| peptide deformylase [Ruminococcus sp. SR1/5]
          Length = 157

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 87/151 (57%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L + SR ++K+   I  LI +ML+ MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MALRTIRVQGDSVLTKKSRTVDKMTPRIGELITDMLDTMYDAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S +     EGCLS+P     V R  ++ V+  D N  
Sbjct: 61  IDVGE-----GPIVLINPEILETSGE-QTGDEGCLSVPGMAGQVTRPNYVKVKAFDVNMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            QI   +GLLA    HE+DHL+G ++ + + 
Sbjct: 115 EQIYEGEGLLARAFCHEIDHLDGKMYTELVE 145


>gi|238650243|ref|YP_002916094.1| polypeptide deformylase [Rickettsia peacockii str. Rustic]
 gi|238624341|gb|ACR47047.1| polypeptide deformylase [Rickettsia peacockii str. Rustic]
          Length = 183

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 65/163 (39%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYTPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIARAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  N-NKSSPIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELS 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG  F+D+LS+LKRD++ KKM K ++L
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDILLKKMLKHIKL 171


>gi|119899899|ref|YP_935112.1| peptide deformylase [Azoarcus sp. BH72]
 gi|119672312|emb|CAL96226.1| probable peptide deformylase [Azoarcus sp. BH72]
          Length = 177

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 6/163 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L R +RP+      ++  ++ +M+E M++  G+GLAA Q+G+  RLV+
Sbjct: 1   MILDILRMGDPRLMRAARPVCAFGTDELRRIVADMVETMHAAGGVGLAAPQVGIDLRLVI 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +      +       V  NP +   SD+     EGCLS+P  R  V R   +  R  
Sbjct: 61  FGFERSERYPDAPPVPFTVLANPVLTPLSDELEEGWEGCLSVPGLRGWVPRFRHLLYRGA 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           D + +      +G  A  +QHE DHL+GIL+   +S   R   
Sbjct: 121 DIDGKPLEREVEGFHARVVQHECDHLDGILYPARISDFSRFGF 163


>gi|224438109|ref|ZP_03659044.1| peptide deformylase [Helicobacter cinaedi CCUG 18818]
          Length = 175

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 99/154 (64%), Gaps = 5/154 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P+PILR+ S  +E  +  +  L+D+M E M  + G+GLAA+Q+G+  R++VI+L  
Sbjct: 8   ILKYPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVINLPR 67

Query: 66  HA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                 ++++ +  INP  +T  DD   ++EGCLS+P++   VKR   ++V Y D     
Sbjct: 68  DEDKQQYKEDLLEVINPTFLTQEDDIE-WEEGCLSVPEFYESVKRFNKVSVAYKDRFGND 126

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +I+ A+G LA  LQHE+DHLNGILF+D L  L+R
Sbjct: 127 KILQAEGFLAVALQHEIDHLNGILFVDKLPILRR 160


>gi|218904997|ref|YP_002452831.1| peptide deformylase [Bacillus cereus AH820]
 gi|218538969|gb|ACK91367.1| peptide deformylase [Bacillus cereus AH820]
          Length = 156

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  R+ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|330444327|ref|YP_004377313.1| peptide deformylase [Chlamydophila pecorum E58]
 gi|328807437|gb|AEB41610.1| peptide deformylase [Chlamydophila pecorum E58]
          Length = 186

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  P+LR  ++ I +I  DI +L+ +M E M +  G+GLAA QIG    L V+
Sbjct: 1   MIRRLEYYGSPVLREKAKEITEITEDIRSLVQDMYETMIAHKGVGLAAPQIGKSLSLFVM 60

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++             P VFINP + + S+   +  EGCLSIP  R +V R   +TV  M
Sbjct: 61  CVEGETPDGELIFCDFPKVFINPVLSSPSEHLVIAYEGCLSIPGLRGEVFRPDRVTVTAM 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQ 167
           + + Q      +G  A  + HE DHL+GIL+ID +            + K+ +
Sbjct: 121 NLDGQKFSETLEGFPARIVMHETDHLHGILYIDRMEEPRDAKKFKVALEKIKR 173


>gi|50954573|ref|YP_061861.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951055|gb|AAT88756.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 188

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 7/156 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  D +L   +  +   + ++  L+  M + M    G+GLA  Q+GV  RL V
Sbjct: 1   MAVLPIRITGDRVLHTRADEVTAFDRELRTLVAEMFDTMDEAPGVGLAGPQVGVPLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSD------DFSVYQEGCLSIPDYRADVKRSAFITVRY 114
               D     +  V INP +   S       D     EGCLS P  R  ++R+  + ++ 
Sbjct: 61  YGWTDDDEVLHRGVAINPVL-WQSPLETGPLDEDAECEGCLSFPGERFPLRRAERVILQA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +D       +  +G LA   QHE DHL G+L++D L
Sbjct: 120 VDLEGAPFEVRTEGWLARIFQHECDHLEGVLYVDRL 155


>gi|167768544|ref|ZP_02440597.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1]
 gi|317498700|ref|ZP_07956992.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710068|gb|EDS20647.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1]
 gi|291560506|emb|CBL39306.1| peptide deformylase [butyrate-producing bacterium SSC/2]
 gi|316894042|gb|EFV16232.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 159

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +LR+  + ++++   +  L+++M + MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRQIRVLGDDVLRKKCKEVKEMTPRMHTLVEDMYDTMYEAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +       +  +NP I T  +   V +EGCLS+P   A VKR   +     D +  
Sbjct: 61  IDTGEEGEC---VTLVNPVI-TLKEGEQVGEEGCLSLPGKVAVVKRPDHVICEAFDEDMN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +   GL A  L HE DHL+GIL+ D      RD+  +++ 
Sbjct: 117 PITVEGFGLFARALCHETDHLDGILYPDVAEEPARDVTMEEVE 159


>gi|291518517|emb|CBK73738.1| peptide deformylase [Butyrivibrio fibrisolvens 16/4]
          Length = 164

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFP-DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +  +  D +L +  +P++++   +  LID+M + MY  DG+GLAA Q+GVL R+ 
Sbjct: 1   MAVLEIREYGKDDVLLKTCKPVKELTPKLRTLIDDMYDTMYDADGVGLAAPQVGVLRRIC 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +      P+  INP ++  S +     EGCLS+P     V R  +  V+ ++ + 
Sbjct: 61  VIDIGE-----GPVTLINPVVLETSGE-QTGNEGCLSVPGKTGIVTRPNYAKVKALNEDM 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I+  + L+A  L HE+DHL+G ++ + + 
Sbjct: 115 EEFIVEGEELMARALLHEIDHLDGHIYTEKVE 146


>gi|260434658|ref|ZP_05788628.1| peptide deformylase [Synechococcus sp. WH 8109]
 gi|260412532|gb|EEX05828.1| peptide deformylase [Synechococcus sp. WH 8109]
          Length = 201

 Score =  183 bits (465), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D +LR+ +R I K+N  +  L  +ML  MY+  GIGLAA Q+G+  +L+VIDL 
Sbjct: 32  EIHTLGDEVLRQSARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLD 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP+I   S     Y+EGCLSIP    DV R   I + + D   + + +
Sbjct: 92  LENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGL+A C+QHE+DHLNG+LF+D ++    D + K++ +
Sbjct: 152 KADGLMARCIQHEMDHLNGVLFVDRVTDE--DGLQKELKE 189


>gi|312141214|ref|YP_004008550.1| peptide deformylase def [Rhodococcus equi 103S]
 gi|325673956|ref|ZP_08153646.1| peptide deformylase [Rhodococcus equi ATCC 33707]
 gi|311890553|emb|CBH49871.1| peptide deformylase Def [Rhodococcus equi 103S]
 gi|325555221|gb|EGD24893.1| peptide deformylase [Rhodococcus equi ATCC 33707]
          Length = 205

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 13/177 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   ++P+ +  +++ +LI +M E M + +G+GLAA Q+GV  RL V
Sbjct: 1   MAILPIRIVGDPVLHEPTKPVTESPAELADLIRDMYETMDAANGVGLAANQVGVAKRLFV 60

Query: 61  IDLQDHAHRKN--------PMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRS 107
            D  D+A  K+            +NP     +I     D     EGCLS+P  +    R+
Sbjct: 61  YDCPDYAAGKDASGKPVMRRGCVVNPVLETSEIPETMPDEDDDVEGCLSVPGEQFPTGRA 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +  V   D +     I   G  A  LQHE  HL+G L++D L    +    K + +
Sbjct: 121 DWAKVTGTDEHGNPVEIEGHGFFARMLQHETGHLDGFLYVDVLIGRNKRAAKKTIKR 177


>gi|148241454|ref|YP_001226611.1| peptide deformylase [Synechococcus sp. RCC307]
 gi|166198524|sp|A5GQU9|DEF_SYNR3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|147849764|emb|CAK27258.1| Peptide deformylase [Synechococcus sp. RCC307]
          Length = 201

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 62/140 (44%), Positives = 86/140 (61%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR+ ++ I K+N  +  L   ML  MY+  GIGLAA Q+GV  +L+VIDL        P+
Sbjct: 41  LRKPAKRISKVNEQVRELAREMLRSMYAAHGIGLAAPQVGVHQQLLVIDLDPEEAANPPL 100

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V INP+I+  S     Y+EGCLSIP    +V R + + V+Y D   + Q   ADGL+A C
Sbjct: 101 VLINPEIVATSGALDTYEEGCLSIPGVYLNVVRPSQVDVKYRDELGRPQRRKADGLMARC 160

Query: 134 LQHELDHLNGILFIDHLSRL 153
           + HE+DHLNG+LF+D +S  
Sbjct: 161 ILHEMDHLNGVLFVDRVSDE 180


>gi|302872125|ref|YP_003840761.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574984|gb|ADL42775.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47]
          Length = 166

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 93/153 (60%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I+ D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIKIYEDEILRKRSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+I  +S+   V  EGCLS+P+   +V+R   + V   D    
Sbjct: 61  IDIGEGA-----IELVNPQI-EYSEGSVVDVEGCLSVPNVWGEVERPQKVVVNAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+GLLA  + HE+DHL+GILF+D + R 
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147


>gi|262341227|ref|YP_003284082.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272564|gb|ACY40472.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 171

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 3/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +  P+VI+ +PILR+    I+  +   +I  LI +M E ++   GIGLAA QIG   RL 
Sbjct: 1   MVLPIVIYGNPILRKKCLDIDLCSCKKEINQLIKDMFETIHQAKGIGLAAPQIGKNIRLF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +++      +    VFIN KI+        + EGCLSIP     VKR + + + Y D N 
Sbjct: 61  IVETPYLDGK-YKEVFINAKILKIHGKEYKFNEGCLSIPGIMGYVKRKSNVLIEYYDHNW 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + Q     G+ A  + HE DHL+G LFID+ S  ++  I KK+  L +
Sbjct: 120 KKQKKTLTGICARVILHEYDHLDGKLFIDYFSSTRKKRIEKKLISLSE 167


>gi|319951883|ref|YP_004163150.1| peptide deformylase [Cellulophaga algicola DSM 14237]
 gi|319420543|gb|ADV47652.1| peptide deformylase [Cellulophaga algicola DSM 14237]
          Length = 196

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 12/162 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V   I K    +  L++NM E MY+  G+GLAA QIG+  RL VI
Sbjct: 1   MILPIIAYGDPVLRKVGTDIAKDYPKLETLVENMWETMYNASGVGLAAPQIGLPIRLFVI 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    +  ++              VF+N KI   + +   + EGCLSIPD R DV R   
Sbjct: 61  DTTPFSEDEDLSPEDQKALDGFKKVFVNAKIEEETGEEWNFNEGCLSIPDVREDVNRKET 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           I + Y+D N   +     GLLA  +QHE DH+ GILF D LS
Sbjct: 121 IKITYLDENFNEKSESYGGLLARVIQHEYDHIEGILFTDKLS 162


>gi|254712281|ref|ZP_05174092.1| peptide deformylase [Brucella ceti M644/93/1]
 gi|254715352|ref|ZP_05177163.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261217080|ref|ZP_05931361.1| peptide deformylase-like protein [Brucella ceti M13/05/1]
 gi|261319950|ref|ZP_05959147.1| peptide deformylase-like protein [Brucella ceti M644/93/1]
 gi|260922169|gb|EEX88737.1| peptide deformylase-like protein [Brucella ceti M13/05/1]
 gi|261292640|gb|EEX96136.1| peptide deformylase-like protein [Brucella ceti M644/93/1]
          Length = 164

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   +  +  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L   A    P ++I P+I+   ++   +QEG +S+P     V+R A I +RY D +  
Sbjct: 61  LELDRAAG---PKIYIYPEIVWACEEKIRHQEGSVSMPGVVDKVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRL+R+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164


>gi|294339982|emb|CAZ88345.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
           3As]
          Length = 177

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   DP L RV++P+ K +  ++  LI ++ E M +  G+GLAA QIGV   +V
Sbjct: 1   MTLHTILRMGDPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP+I    D      EGCLS+P  R  V R   I  R 
Sbjct: 61  IFGFSQSARYPEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           MD         A+G  A  +QHE DHL G L+   +    R   T ++
Sbjct: 121 MDPYGNPIDREAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168


>gi|296135817|ref|YP_003643059.1| peptide deformylase [Thiomonas intermedia K12]
 gi|295795939|gb|ADG30729.1| peptide deformylase [Thiomonas intermedia K12]
          Length = 177

 Score =  182 bits (464), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   DP L RV++P+ K +  ++  LI ++ E M +  G+GLAA QIGV   +V
Sbjct: 1   MTLHTILRMGDPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP+I    D      EGCLS+P  R  V R   I  R 
Sbjct: 61  IFGFSQSARYPEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           MD         A+G  A  +QHE DHL G L+   +    R   T ++
Sbjct: 121 MDAYGNPIDREAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168


>gi|218442239|ref|YP_002380568.1| peptide deformylase [Cyanothece sp. PCC 7424]
 gi|218174967|gb|ACK73700.1| peptide deformylase [Cyanothece sp. PCC 7424]
          Length = 176

 Score =  182 bits (464), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 6/168 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            +    +PILR+ ++ +E I    +  LID+++    S +G+G+AA Q+   YRL ++  
Sbjct: 6   EIAQLGNPILRQNAQSVENITDITLQTLIDDLIATAASANGVGIAAPQVSQSYRLFIVAS 65

Query: 64  QD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +      +A   NP   INP+II+ S +     EGCLS+P  R  V R   ITV Y+D  
Sbjct: 66  RPSPRYPNAPEMNPTPMINPRIISHSPEKVKGWEGCLSVPGLRGLVPRYHTITVEYLDRY 125

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              Q       +A   QHELDHL+GILF+D L   +     ++  K++
Sbjct: 126 GNLQRQELTDFVARIFQHELDHLDGILFVDRLESSQDLYTEEEYQKII 173


>gi|152989916|ref|YP_001355638.1| peptide deformylase [Nitratiruptor sp. SB155-2]
 gi|151421777|dbj|BAF69281.1| formylmethionine deformylase [Nitratiruptor sp. SB155-2]
          Length = 176

 Score =  182 bits (464), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 94/153 (61%), Gaps = 4/153 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PD  L   S+ +E  + ++  L+D+M E M + +GIGLAA+Q+ V  R ++I
Sbjct: 1   MIRQIITYPDKRLFLRSKEVENFDEELQTLLDDMYETMVAKNGIGLAAIQVAVPLRALII 60

Query: 62  DLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L D     H+++ +  INP I+       VY EGCLS+PDY  DV+R+ ++ V Y D  
Sbjct: 61  NLPDEEGKQHKEDLLELINPVIVEKKG-TQVYTEGCLSVPDYYDDVERAEWVKVEYQDRY 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + +  DGLLA  +QHE+DHL+G LFI+ L 
Sbjct: 120 GNKKTLETDGLLAVAVQHEMDHLDGHLFIEKLP 152


>gi|308535392|ref|YP_002140756.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
 gi|308052737|gb|ACH40960.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
          Length = 184

 Score =  182 bits (464), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 107/169 (63%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + +V +P+ IL+   + +E+I+  +  L+D++++ M++  G +G+A+ QIGV  R+ 
Sbjct: 17  MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMHAGPGSVGVASPQIGVSLRVC 76

Query: 60  VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           VID+  + H K+     ++ INP+I+  S   +V +EGC+S+PDY  DV+RS  +T+R+ 
Sbjct: 77  VIDVSKNRHGKDNNHGLLLMINPEILARSGA-AVMREGCMSVPDYTGDVERSTELTLRFT 135

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +   +   A G  A  +QHELDHL+G+LF+D ++ LK  +  +K  K
Sbjct: 136 EPDGTVREFEASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 184


>gi|170754628|ref|YP_001782053.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|169119840|gb|ACA43676.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
          Length = 147

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 93/150 (62%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR IEKI+  I+ L+++M+E MY+ +G+GLAA Q+G+L R VV
Sbjct: 1   MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II    +     EGCLS+P  + +V+R   + V+ ++   +
Sbjct: 61  IDVGE-----GLIKLINPEIIETEGN-QKDVEGCLSVPGEQGEVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++  + LLA    HE+DHL+G+LF+D +
Sbjct: 115 EVVLEGEDLLARAFCHEIDHLDGVLFVDKV 144


>gi|329942666|ref|ZP_08291445.1| peptide deformylase [Chlamydophila psittaci Cal10]
 gi|332287261|ref|YP_004422162.1| peptide deformylase [Chlamydophila psittaci 6BC]
 gi|313847847|emb|CBY16841.1| peptide deformylase [Chlamydophila psittaci RD1]
 gi|325507284|gb|ADZ18922.1| peptide deformylase [Chlamydophila psittaci 6BC]
 gi|328814926|gb|EGF84915.1| peptide deformylase [Chlamydophila psittaci Cal10]
 gi|328914507|gb|AEB55340.1| peptide deformylase [Chlamydophila psittaci 6BC]
          Length = 184

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  P LRR +  I  I  +I  L  +M E M +  G+GLAA Q+G   RL V+
Sbjct: 1   MIRELEYYGSPTLRREADAILDITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVRLFVM 60

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++      +      P V+INP +   S+D  + +EGCLSIP  RADV R   ITV+ +
Sbjct: 61  CVEGETEDGDLIFCDFPKVYINPVLSDVSEDLVLGREGCLSIPGLRADVYRPRSITVKAI 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167
           + + Q    + +G  A  + HE DHLNG+L+ID +   K        + K+ +
Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLNGVLYIDKMEEPKDYKKFKSTLEKIRR 173


>gi|210622388|ref|ZP_03293141.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275]
 gi|210154270|gb|EEA85276.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275]
          Length = 146

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    +P+LR+  +P+ K +  +  L+D+M + MY  DG+GLAA Q+G+L R VV
Sbjct: 1   MALRRVTKMGEPVLRKKCKPVTKFDEKLGQLLDDMADTMYEADGVGLAAPQVGMLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II  + +     EGCLS+ +    V R  F+ V+  D + +
Sbjct: 61  IDIGE-----GLIELINPEIIETAGE-QTDIEGCLSVDNINEPVTRPYFVKVKAQDRHGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  + LLA    HELDHL+GILF+D + +
Sbjct: 115 EFELAGEELLARAFCHELDHLDGILFVDRIEK 146


>gi|290962175|ref|YP_003493357.1| polypeptide deformylase [Streptomyces scabiei 87.22]
 gi|260651701|emb|CBG74826.1| polypeptide deformylase [Streptomyces scabiei 87.22]
          Length = 156

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 73/153 (47%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
               + +   ++  L+++M   MY   G+GLAA Q+G   R+ V D  D    ++    +
Sbjct: 4   PCEEVTEFGPELARLVEDMFATMYDARGVGLAANQVGRALRVFVYDCPDDEDVRHLGHVV 63

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP++++         EGCLS+P   A V+R     V     +     ++  G  A CLQH
Sbjct: 64  NPRLVSAEGIVLRGPEGCLSLPGLEAGVERYDEAAVEGFTVDGDRVRVWGSGFFARCLQH 123

Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           E DHL G ++ D LS  +R  + +K ++    R
Sbjct: 124 ECDHLEGRVYADRLSGWRRRRVLRKAARAPWGR 156


>gi|260219440|emb|CBA26285.1| Peptide deformylase 2 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 179

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV++P+ + +SD +  L+ +ML+ M + +G GLAA QIGV  +LV
Sbjct: 1   MTVRDILKMGDPRLLRVAQPVTEFDSDALHLLVTDMLDTMRAANGAGLAAPQIGVDLQLV 60

Query: 60  VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +    +   R        P V  NP I    D+     EGCLS+P  R  V R + I   
Sbjct: 61  IFGGNERNPRYPDRPIVPPTVLCNPVITPLGDEEENDWEGCLSVPGLRGVVPRWSRIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             D          DG  A  +QHE DH+ G L+   +   
Sbjct: 121 GFDQYGDAIDRTVDGFHARVVQHECDHVWGKLYPMRVRDF 160


>gi|307322251|ref|ZP_07601618.1| peptide deformylase [Sinorhizobium meliloti AK83]
 gi|306892102|gb|EFN22921.1| peptide deformylase [Sinorhizobium meliloti AK83]
          Length = 172

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 95/169 (56%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ FP P+L   +  I +    +  L D++++ M +  GIG+ A  IG+L RL V
Sbjct: 1   MAVRPIIRFPSPLLTTSAERIGRFGGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I++        P  F+NP+I+  S + + + EG +S+P    +V+R   + + +   + +
Sbjct: 61  IEVDPQMG---PRSFVNPEIVWQSSETARHSEGSVSMPGVAEEVERPVRVRISFQTLDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   A+GL+A CLQHE+D LNGI +I  LSRLKR+   K+  K  +  
Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKFNRAE 166


>gi|332981562|ref|YP_004463003.1| peptide deformylase [Mahella australiensis 50-1 BON]
 gi|332699240|gb|AEE96181.1| peptide deformylase [Mahella australiensis 50-1 BON]
          Length = 165

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DPILR+ +RP+ KI+  ++ L+D+M+E M   +G+GLAA Q+G+L R+VV
Sbjct: 1   MALREIRKFKDPILRKKARPVVKIDKRLLTLLDDMVETMKKAEGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D          INP+II  S +  V  EGCLS P     VKR   +TVR MD   +
Sbjct: 61  IADMDEDKIIE---LINPEIIAQSGE-QVGPEGCLSFPGMSGTVKRPEQVTVRAMDRKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + +   G++A    HE+DHL+GI+F+D +   
Sbjct: 117 IREVTGTGIIARAFCHEIDHLDGIVFLDKVIPE 149


>gi|227500109|ref|ZP_03930180.1| peptide deformylase [Anaerococcus tetradius ATCC 35098]
 gi|227217824|gb|EEI83121.1| peptide deformylase [Anaerococcus tetradius ATCC 35098]
          Length = 158

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/149 (42%), Positives = 91/149 (61%), Gaps = 3/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR++SR + +I   I  L+D+M + MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRKEGDPILRKISRNVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D   H      +  +NP+II    +  V  EGCLSIP++ A VKR   + V+Y++ N +
Sbjct: 61  VD--PHDDSTGLIKLVNPEIIEEDGE-QVGIEGCLSIPNFNATVKRPEHVKVKYLNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
            +I  A G  A  L HE+DHLNGILF D 
Sbjct: 118 EKIWDAHGFPAEILSHEIDHLNGILFRDK 146


>gi|187778895|ref|ZP_02995368.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC
           15579]
 gi|187772520|gb|EDU36322.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC
           15579]
          Length = 147

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 92/150 (61%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR IEKI+  I+ L+++M E MYS +G+GLAA Q+G+L R+VV
Sbjct: 1   MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMAETMYSAEGVGLAAPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II          EGCLS+P  + +V+R   + V+ ++   +
Sbjct: 61  IDVGE-----GLIKLINPEIIETEGS-QKDVEGCLSVPGEQGEVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++  + LLA    HE+DHL+G+LF+D +
Sbjct: 115 QIVLEGEELLARAFCHEIDHLDGVLFVDKV 144


>gi|289523051|ref|ZP_06439905.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503594|gb|EFD24758.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 165

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 89/159 (55%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P+PILR  ++ +   N D+  LI++M E MY+ DG+GLAA Q+G+   + V
Sbjct: 1   MAILEVIKYPNPILRSKNKIVTAFNDDLKKLIEDMYETMYANDGLGLAAPQVGINLMVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D +           +NP I+    +    +EGCLS P+   D++R   + +   D N +
Sbjct: 61  VDYEGK-----KYTLVNPAILEKRGE-QTGREGCLSFPEVFEDIERPEIVKIEAFDENGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              I A GLLA    HE+DHL+G L ID +S +KR+MI 
Sbjct: 115 KYAIEASGLLARAFCHEIDHLHGRLIIDMVSPVKRNMIQ 153


>gi|126660127|ref|ZP_01731246.1| polypeptide deformylase [Cyanothece sp. CCY0110]
 gi|126618570|gb|EAZ89320.1| polypeptide deformylase [Cyanothece sp. CCY0110]
          Length = 169

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 6/153 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            +    +PILR+ ++ +  I  + +  LID +L       G+G+AA Q+   YRL ++  
Sbjct: 7   EIAQVGNPILRQQAQYVTDITDEKLQQLIDTLLTTAIDAKGVGIAAPQVSQSYRLFIVCS 66

Query: 64  QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
             ++   +     P V INP +++ S++     EGCLS+P  R  V R   ITV Y+D  
Sbjct: 67  HPNSRYPDAPSMEPTVMINPCLVSHSEEMVKGWEGCLSVPGVRGLVSRYQKITVEYLDRY 126

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +         +A   QHELDHLNGILFID ++
Sbjct: 127 GKLHQQEFTDFVARIFQHELDHLNGILFIDRVN 159


>gi|152976233|ref|YP_001375750.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024985|gb|ABS22755.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98]
          Length = 158

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M + DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVILLKDMYETMVAADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  IDIGDDTGKIE---LINPVILEKRGE-QVGPEGCLSFPGLYGEVERAEYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 IFLLEANGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|304440681|ref|ZP_07400565.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370868|gb|EFM24490.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 160

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 90/153 (58%), Gaps = 5/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR++S+ +  IN  +  LI +M E M  ++G+GLAA Q+G+L R++ 
Sbjct: 1   MAIRNIRTDEDPILRKISKEVNDINDRMKTLISDMFETMDYSNGVGLAAPQVGILRRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D QD         FINPKII    +  V  EGCLS+P  +  V R+  I V YMD N +
Sbjct: 61  LDDQDGLR----GAFINPKIIEKDGE-QVGPEGCLSVPGKQGTVNRANHIVVTYMDENGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + + A+G  A   QHE+DHLNGIL+ D  + +
Sbjct: 116 EKTLEAEGFTARIFQHEIDHLNGILYTDLATEI 148


>gi|126738019|ref|ZP_01753740.1| peptide deformylase [Roseobacter sp. SK209-2-6]
 gi|126720516|gb|EBA17221.1| peptide deformylase [Roseobacter sp. SK209-2-6]
          Length = 165

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  +  + +I  ++     ++++ M +  G+G+ A QIGV+ RL V
Sbjct: 1   MSVRPCLPWPDQRLRTAATEVVEITDEVRTTWQDLIDTMEAMPGVGMGANQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D    + R   +   NP+I+  S     ++E   ++P   A +KR   +TVRYMD N +
Sbjct: 61  VD--GSSERGRAVRMANPEILHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  G+ AT +QH++DHL+G L+ D LS++KRDM+ KK  K 
Sbjct: 119 ITERDFVGIEATSVQHQIDHLDGKLYFDRLSKVKRDMLIKKSKKF 163


>gi|297559276|ref|YP_003678250.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296843724|gb|ADH65744.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 184

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V F DP+L   + P+ + +     L+D++LE + +    GLAA QIGV  R+  
Sbjct: 1   MTMRPIVRFGDPVLVTPTTPVTRFDKHTRALVDDLLETVEAPGRAGLAANQIGVGLRVFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +++           INP+I   S++     EGCLS+P       R+ +  V  +D   +
Sbjct: 61  YNVEGRIGY-----VINPRIAELSEEVQEGDEGCLSVPRLWYPATRAEYAVVTGVDLRNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   GL+A CLQHE DHL+G+++I+ L    R    + + +
Sbjct: 116 PVTVEGTGLMARCLQHETDHLDGMVYIERLDPQTRKRALRDIRR 159


>gi|86151304|ref|ZP_01069519.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315123790|ref|YP_004065794.1| peptide deformylase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841651|gb|EAQ58898.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315017512|gb|ADT65605.1| peptide deformylase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 175

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 99/158 (62%), Gaps = 3/158 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L   S+ + K ++++  L+D+M E M +++G+GLAA+Q+ +  R++++
Sbjct: 1   MVRKIITYPNPRLFLNSKIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60

Query: 62  DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++    D   +++ +  INP+II   ++     EGCLS+PD+  +VKR   I ++Y D  
Sbjct: 61  NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            + + + A G LA  +QHE DHLNG LFI+ +S  KR 
Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158


>gi|150390546|ref|YP_001320595.1| peptide deformylase [Alkaliphilus metalliredigens QYMF]
 gi|167012061|sp|A6TRW8|DEF_ALKMQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|149950408|gb|ABR48936.1| peptide deformylase [Alkaliphilus metalliredigens QYMF]
          Length = 147

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 93/153 (60%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR+ SR ++KI+S I  L+D+M+E MY  DG+GLAA Q+G+L +++V
Sbjct: 1   MAIRLIRTDDDPVLRKKSRVVDKIDSRIHTLLDDMIETMYEADGVGLAAPQVGILKQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II  +       EGCLS+P +  +V+R A + VR ++   +
Sbjct: 61  IDVGE-----GVIELINPEIIKETGS-QCDVEGCLSLPGHSGEVERPAIVKVRGLNRQGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I    LLA  L HE+DHLNGILF D + + 
Sbjct: 115 MVEIQGTELLARALCHEIDHLNGILFTDKIIKE 147


>gi|254424040|ref|ZP_05037758.1| peptide deformylase [Synechococcus sp. PCC 7335]
 gi|196191529|gb|EDX86493.1| peptide deformylase [Synechococcus sp. PCC 7335]
          Length = 187

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/144 (45%), Positives = 94/144 (65%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
              D +LR+ ++ + KI++ + +L+  ML+ MYS DGIGLAA Q+GV  +L+VID     
Sbjct: 21  QMGDRVLRQPAKRVAKIDNALRDLVRKMLQTMYSEDGIGLAAPQVGVNKQLLVIDADPEN 80

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
              + +V +NPKII +SD+ +  QEGCLSIP    DV R A I V + D N + + + AD
Sbjct: 81  EAASALVLVNPKIIRYSDELAAGQEGCLSIPGVYLDVIRPAAIEVSFKDENGRPRKLKAD 140

Query: 128 GLLATCLQHELDHLNGILFIDHLS 151
            LLA  +QHE+DHLNG+LF+D + 
Sbjct: 141 DLLARVIQHEMDHLNGVLFVDRVE 164


>gi|148380464|ref|YP_001255005.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|153931783|ref|YP_001384687.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|153937071|ref|YP_001388208.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|153938227|ref|YP_001391806.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|168180607|ref|ZP_02615271.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|226949863|ref|YP_002804954.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|148289948|emb|CAL84061.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           3502]
 gi|152927827|gb|ABS33327.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|152932985|gb|ABS38484.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|152934123|gb|ABS39621.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|182668570|gb|EDT80549.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|226842477|gb|ACO85143.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|295319831|gb|ADG00209.1| peptide deformylase [Clostridium botulinum F str. 230613]
 gi|322806777|emb|CBZ04346.1| peptide deformylase [Clostridium botulinum H04402 065]
          Length = 147

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 93/150 (62%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR IEKI+  I+ L+++M+E MY+ +G+GLAA Q+G+L R VV
Sbjct: 1   MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II    +     EGCLS+P  + +V+R   + V+ ++   +
Sbjct: 61  IDVGE-----GLIKLINPEIIETEGN-QKDVEGCLSVPGEQGEVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++  + LLA    HE+DHL+G+LF+D +
Sbjct: 115 EIVLEGEDLLARAFCHEIDHLDGVLFVDKV 144


>gi|326203181|ref|ZP_08193047.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
 gi|325986827|gb|EGD47657.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
          Length = 159

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    + +LR++SRP+E I+  I++L+++M + MY  DG+GLAA QIGVL R+VV
Sbjct: 1   MAYRQIRKDGEEVLRKISRPVENIDKKILSLLEDMADTMYRADGVGLAAPQIGVLKRMVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +       INP I+  S +     EGCLSI      VKR   +T++Y D N +
Sbjct: 61  IDVGDGLYE-----MINPVILEQSGE-QDGIEGCLSILGVLGKVKRPMNVTLKYTDRNGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I A    A  + HELDHL+GIL+ D   ++  +   ++M K
Sbjct: 115 DITIEASEFFARAICHELDHLDGILYKDKAYKMYTEKEFEEMQK 158


>gi|67923097|ref|ZP_00516588.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
 gi|67855050|gb|EAM50318.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
          Length = 188

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/147 (40%), Positives = 87/147 (59%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    D  LR+ ++ I K++  I  L   ML+ MYS+ GIGLAA Q+ +  +L+V+D +
Sbjct: 18  DIHFLGDRALRQPAKRIAKVDDSIRKLAKEMLQTMYSSQGIGLAAPQVAIQKQLIVVDCE 77

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                 +P++ INPKI  FS +  V +EGCLSIP    DV R   I V + D   + + I
Sbjct: 78  PDNPANSPLILINPKITVFSKELCVVEEGCLSIPGVYLDVTRPKAIEVSFKDEQGKPRKI 137

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS 151
            A  LLA  +QHE+DHLNG++F+D + 
Sbjct: 138 QATELLARVIQHEMDHLNGVMFVDRVD 164


>gi|196234527|ref|ZP_03133350.1| peptide deformylase [Chthoniobacter flavus Ellin428]
 gi|196221407|gb|EDY15954.1| peptide deformylase [Chthoniobacter flavus Ellin428]
          Length = 187

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 16/182 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V + +P+LR   R ++ ++  I  L  +MLE M + +G+GLAA QIGV  ++ VI
Sbjct: 1   MILEIVKYGNPVLREKGREVKDVDEKIKQLSVDMLETMRAANGVGLAAQQIGVPIQMTVI 60

Query: 62  DLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           D+     R                 P+V +NP +  FS++     EGCLS PD  A++ R
Sbjct: 61  DVAGIEDRPSAMWINDKEVPIEEHMPLVLLNPVL-KFSEEKESGNEGCLSFPDITAEITR 119

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           S+ +       + +     A GLLA  LQHE DHL+G+LFID ++   +  I+ K+ +L 
Sbjct: 120 SSGVQCTATLLDGKKIEFEAAGLLARALQHETDHLHGVLFIDRMNAATKAGISGKLKRLQ 179

Query: 167 QL 168
           + 
Sbjct: 180 KE 181


>gi|329912478|ref|ZP_08275758.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545607|gb|EGF30770.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
          Length = 178

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV+ P+ + +   +  LI +M E M++ +G GLAA QIGV  +LV
Sbjct: 1   MTVREILKMGDPRLLRVAEPVTEFDTPAMRLLIADMFETMHAVNGAGLAAPQIGVNLQLV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +   +       A      + INP +   SD+     EGCLS+P  R  V R   +    
Sbjct: 61  IYGSRNNVRYPEAPEVPETILINPVLTPLSDELVENWEGCLSVPGLRGVVPRWQALHYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +D          DG  A  +QHE DHL G+L+   ++   R
Sbjct: 121 VDQFGAVISRDVDGFHARVVQHECDHLIGVLYPMRVTDFSR 161


>gi|315644089|ref|ZP_07897259.1| peptide deformylase [Paenibacillus vortex V453]
 gi|315280464|gb|EFU43753.1| peptide deformylase [Paenibacillus vortex V453]
          Length = 172

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 96/151 (63%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  K +V F DPILR+V+RP++ +N+  + ++D+M E +Y + G  GLAA QIG+L RL+
Sbjct: 1   MTVKAIVPFGDPILRKVARPVDPVNARALKILDDMAETLYDSAGRAGLAAPQIGILRRLI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D  +       +  INP+I+  + +  V  E CLS P Y   V+R+  + V+ ++   
Sbjct: 61  VMDCGE-----GLIELINPEIVEMNGE-QVGPEACLSYPGYYGYVQRAHHVKVKTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  I+  +  LA C+QHE+DHLNG+LF+DH+
Sbjct: 115 ETIILEGEDYLARCMQHEIDHLNGLLFVDHV 145


>gi|91788452|ref|YP_549404.1| peptide deformylase [Polaromonas sp. JS666]
 gi|91697677|gb|ABE44506.1| Peptide deformylase [Polaromonas sp. JS666]
          Length = 179

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV++P+   ++D +  L+ +M + M + DG GLAA QIGV  ++V
Sbjct: 1   MTVREILKMGDPRLFRVAQPVAAFDTDALHLLVSDMFDTMRAADGAGLAAPQIGVNLQVV 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      V +NP I   S D     EGCLS+P  R  V R + I   
Sbjct: 61  IFGADQVNPRYPDAPLVPRTVLLNPVITPLSADEEEGWEGCLSVPGLRGLVPRFSHIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D          DG  A  +QHE DHL G L+   +    +
Sbjct: 121 GFDQYGDPIDRTVDGFHARVVQHECDHLMGKLYPMRIRDFTQ 162


>gi|91784124|ref|YP_559330.1| peptide deformylase [Burkholderia xenovorans LB400]
 gi|296158911|ref|ZP_06841739.1| peptide deformylase [Burkholderia sp. Ch1-1]
 gi|91688078|gb|ABE31278.1| Formylmethionine deformylase [Burkholderia xenovorans LB400]
 gi|295890786|gb|EFG70576.1| peptide deformylase [Burkholderia sp. Ch1-1]
          Length = 177

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L R++ P++  +  ++  L+ +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVI 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGHNERYPDAPPVPETVLINPTITPVSQDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +     A+G  A  +QHE DHL G L+   ++   +   T+ +
Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAKFGFTEVL 167


>gi|222529031|ref|YP_002572913.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725]
 gi|254767570|sp|B9MR36|DEF_ANATD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|222455878|gb|ACM60140.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725]
          Length = 166

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+I       +V  EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGA-----IELVNPEIEQVEGS-AVDVEGCLSVPNVWGEVERPQKVVVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+GLLA  + HE+DHL+GILF+D + R 
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147


>gi|257066166|ref|YP_003152422.1| peptide deformylase [Anaerococcus prevotii DSM 20548]
 gi|256798046|gb|ACV28701.1| peptide deformylase [Anaerococcus prevotii DSM 20548]
          Length = 158

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/149 (41%), Positives = 89/149 (59%), Gaps = 3/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPILR+ S+ + +I   I  L+D+M + MY  DG+GLAA Q+G+L R++V
Sbjct: 1   MAIRNIRKEGDPILRKTSKLVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D   H      +  +NP+II  SD   +  EGCLSIP++ A VKR   + V+Y+D    
Sbjct: 61  VD--PHDDTTGLVKLVNPEIIE-SDGEQIGIEGCLSIPNFNATVKRPEHLKVKYLDEEGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
            +I  A G  A  L HE+DHL+GILF D 
Sbjct: 118 EKIWDAHGFPAEILSHEIDHLDGILFRDK 146


>gi|222618921|gb|EEE55053.1| hypothetical protein OsJ_02752 [Oryza sativa Japonica Group]
          Length = 260

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 85/162 (52%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 60  VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 119

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP +   S    VY+E CLS P   A+V R   + +   D       + 
Sbjct: 120 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVK 179

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             GL A   QHE DHL GILF D +S    + + + +  L +
Sbjct: 180 LSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEK 221


>gi|313144549|ref|ZP_07806742.1| peptide deformylase [Helicobacter cinaedi CCUG 18818]
 gi|313129580|gb|EFR47197.1| peptide deformylase [Helicobacter cinaedi CCUG 18818]
          Length = 179

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 99/154 (64%), Gaps = 5/154 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P+PILR+ S  +E  +  +  L+D+M E M  + G+GLAA+Q+G+  R++VI+L  
Sbjct: 12  ILKYPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVINLPR 71

Query: 66  HA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                 ++++ +  INP  +T  DD   ++EGCLS+P++   VKR   ++V Y D     
Sbjct: 72  DEDKQQYKEDLLEVINPTFLTQEDDIE-WEEGCLSVPEFYESVKRFNKVSVAYKDRFGND 130

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +I+ A+G LA  LQHE+DHLNGILF+D L  L+R
Sbjct: 131 KILQAEGFLAVALQHEIDHLNGILFVDKLPILRR 164


>gi|170759595|ref|YP_001787825.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169406584|gb|ACA54995.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
          Length = 147

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR IEKI+  I+ L+++M+E MYS +G+GLAA Q+G+L R VV
Sbjct: 1   MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+II    +     EGCLS+P  + +V+R   + V+ ++   +
Sbjct: 61  IDVGE-----GLIKLINPEIIETEGN-QKDVEGCLSVPGEQGEVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
             ++  + LLA    HE+DHL+G+LF+D +
Sbjct: 115 EIVLEGEDLLARAFCHEIDHLDGVLFVDKV 144


>gi|325104375|ref|YP_004274029.1| peptide deformylase [Pedobacter saltans DSM 12145]
 gi|324973223|gb|ADY52207.1| peptide deformylase [Pedobacter saltans DSM 12145]
          Length = 194

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 15/183 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++ +   IL++    IEK   ++  LI +M E M + +G GLA+ QIG+  RL ++
Sbjct: 1   MKRSILAYGHHILKQKCNYIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60

Query: 62  DLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           D +                   +     FIN KII  S++    +EGCLSIP+    VKR
Sbjct: 61  DSKSTFDNLGEEDRKFYFPQDDKGIMETFINAKIIQRSEELWDDEEGCLSIPNLFYKVKR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +  IT+ Y + N + QI    G  A  +QHE DH  G+L++D+L  L + ++  K+ K++
Sbjct: 121 NWAITIEYYNRNFEKQIRTFSGTTARMIQHEYDHTEGVLYLDYLKPLTKRLMASKLQKIL 180

Query: 167 QLR 169
           + +
Sbjct: 181 KGQ 183


>gi|40889670|pdb|1RL4|A Chain A, Plasmodium Falciparum Peptide Deformylase Complex With
           Inhibitor
 gi|40889671|pdb|1RL4|B Chain B, Plasmodium Falciparum Peptide Deformylase Complex With
           Inhibitor
          Length = 188

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V +PDPILRR S  +   + ++  ++  M ++MY + GIGL+A Q+ +  R++V + L 
Sbjct: 11  IVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALY 70

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +    +N  +FINP I+  S       EGCLS P     V+R + +++ Y D N    + 
Sbjct: 71  EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 130

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ +   QHE DHLNG LFID ++++ +  +  K+++L++
Sbjct: 131 ILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 173


>gi|170692137|ref|ZP_02883300.1| peptide deformylase [Burkholderia graminis C4D1M]
 gi|170142567|gb|EDT10732.1| peptide deformylase [Burkholderia graminis C4D1M]
          Length = 177

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L R++ P++  +  ++  LI +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +     A+G  A  +QHE DHL G L+   ++   +   T+ +
Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAKFGFTEVL 167


>gi|153855354|ref|ZP_01996503.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814]
 gi|149752174|gb|EDM62105.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814]
          Length = 157

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 84/147 (57%), Gaps = 6/147 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F D +L +  + + K+      LI++ML+ MY   G+GLAA Q+G+L R+VV
Sbjct: 1   MALRTIREFGDEVLNKECKEVTKMTLRTKVLINDMLDTMYEAMGVGLAAPQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP I+  S +    +EGCLS+P     V R  +  V+ ++ + +
Sbjct: 61  IDIGE-----GPIVLINPVILETSGE-QTGEEGCLSLPGKAGIVTRPNYAKVKALNEDME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
             I+  +GLLA    HE+DHL+G L+ 
Sbjct: 115 EVILEGEGLLARAFCHEIDHLDGKLYT 141


>gi|42782959|ref|NP_980206.1| peptide deformylase [Bacillus cereus ATCC 10987]
 gi|49478423|ref|YP_037928.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141621|ref|YP_085208.1| peptide deformylase [Bacillus cereus E33L]
 gi|196035868|ref|ZP_03103270.1| peptide deformylase [Bacillus cereus W]
 gi|196038865|ref|ZP_03106173.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|206976769|ref|ZP_03237673.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217961287|ref|YP_002339855.1| peptide deformylase [Bacillus cereus AH187]
 gi|222097312|ref|YP_002531369.1| peptide deformylase [Bacillus cereus Q1]
 gi|225865848|ref|YP_002751226.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|228916504|ref|ZP_04080070.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228928915|ref|ZP_04091947.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935181|ref|ZP_04098008.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947586|ref|ZP_04109876.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228987010|ref|ZP_04147136.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229092910|ref|ZP_04224044.1| Peptide deformylase 1 [Bacillus cereus Rock3-42]
 gi|229123381|ref|ZP_04252585.1| Peptide deformylase 1 [Bacillus cereus 95/8201]
 gi|229140513|ref|ZP_04269068.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26]
 gi|229157443|ref|ZP_04285521.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342]
 gi|229174533|ref|ZP_04302065.1| Peptide deformylase 1 [Bacillus cereus MM3]
 gi|229197978|ref|ZP_04324692.1| Peptide deformylase 1 [Bacillus cereus m1293]
 gi|254721399|ref|ZP_05183188.1| peptide deformylase [Bacillus anthracis str. A1055]
 gi|301055358|ref|YP_003793569.1| peptide deformylase [Bacillus anthracis CI]
 gi|42738886|gb|AAS42814.1| polypeptide deformylase [Bacillus cereus ATCC 10987]
 gi|49329979|gb|AAT60625.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51975090|gb|AAU16640.1| peptide deformylase [Bacillus cereus E33L]
 gi|195991517|gb|EDX55483.1| peptide deformylase [Bacillus cereus W]
 gi|196030588|gb|EDX69187.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|206745079|gb|EDZ56482.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217064571|gb|ACJ78821.1| peptide deformylase [Bacillus cereus AH187]
 gi|221241370|gb|ACM14080.1| peptide deformylase [Bacillus cereus Q1]
 gi|225786088|gb|ACO26305.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|228585457|gb|EEK43561.1| Peptide deformylase 1 [Bacillus cereus m1293]
 gi|228609093|gb|EEK66383.1| Peptide deformylase 1 [Bacillus cereus MM3]
 gi|228626170|gb|EEK82919.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342]
 gi|228643074|gb|EEK99350.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26]
 gi|228660157|gb|EEL15793.1| Peptide deformylase 1 [Bacillus cereus 95/8201]
 gi|228690532|gb|EEL44315.1| Peptide deformylase 1 [Bacillus cereus Rock3-42]
 gi|228772788|gb|EEM21228.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228812106|gb|EEM58437.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824546|gb|EEM70351.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830722|gb|EEM76327.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843083|gb|EEM88165.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|300377527|gb|ADK06431.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI]
 gi|324327765|gb|ADY23025.1| peptide deformylase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 156

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|319442115|ref|ZP_07991271.1| peptide deformylase [Corynebacterium variabile DSM 44702]
          Length = 166

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    + +F DP+LR V+  I+   +  +  L+++M E M +  G+GLAA Q+GV  R+ 
Sbjct: 1   MTALDIRLFGDPVLRTVAENIDDPTDPTLRTLVEDMYETMDAAGGVGLAANQVGVTRRVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D             +NP       +    +EGCLS+PD   DV R+A + +  +  + 
Sbjct: 61  VYDCDGDRG-----HIVNPVWEAVGAETQTGREGCLSVPDAGGDVTRAATVHLTGVTVDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           +       GL+A C+QHE DHL+G+++   +    R  + 
Sbjct: 116 EEVDREVTGLMARCVQHETDHLDGVMYFQRMESGTRREVM 155


>gi|257095171|ref|YP_003168812.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257047695|gb|ACV36883.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 177

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   DP L R + P+E+     +  LI +M E M   DG GLAA QIGV  RLV+
Sbjct: 1   MIRPVLRMGDPRLARKAAPVEQFATPALHALIADMEETMRHLDGAGLAAPQIGVGLRLVI 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +        A      V INP +   S       EGCLS+P  R  V R + +     
Sbjct: 61  FGVDRNPRYPEAEPVPRTVLINPVLFPLSSATEEAWEGCLSVPGLRGWVPRWSRLRYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +       G  A  +QHE DHL+GIL+   +  + R    +++
Sbjct: 121 DARGRPIDRSVAGFHARVVQHECDHLDGILYPMRIRDMSRFGFVEEL 167


>gi|302346308|ref|YP_003814606.1| peptide deformylase [Prevotella melaninogenica ATCC 25845]
 gi|302150701|gb|ADK96962.1| peptide deformylase [Prevotella melaninogenica ATCC 25845]
          Length = 186

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VV+
Sbjct: 1   MVLPIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVV 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL         ++     FIN  I+ + D +    +EGCLS+P     V R+  + V++ 
Sbjct: 61  DLDVLSDTFPEYKDYRHAFINGHILEYDDSETETLEEGCLSLPGVHESVTRAKRVYVKWY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + DG LA  +QHE DHL G +F D LS  ++ MIT K+  L+Q +
Sbjct: 121 DENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMITSKLKALLQGK 174


>gi|307109178|gb|EFN57416.1| hypothetical protein CHLNCDRAFT_17300 [Chlorella variabilis]
          Length = 169

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 83/148 (56%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP LR  +  I   +  +  L + M EVMY  DG+GLAA Q+GV  RL+V +   
Sbjct: 13  VLRYPDPRLRAPNARIGAFDDSLRRLAEEMFEVMYEDDGVGLAAPQVGVNVRLMVFNEAG 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                + +V +NP+II      ++++EGCLS P+  ADV+R + + V+  D + +   + 
Sbjct: 73  EKGAGDEIVLVNPQIINQGKARNMFEEGCLSFPNIYADVERPSKVKVKAQDLSGKKFTVS 132

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153
             G  A   QHE DHL+G LF D ++  
Sbjct: 133 LIGFPARIFQHEYDHLDGRLFHDRMAPE 160


>gi|300813955|ref|ZP_07094254.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511929|gb|EFK39130.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 166

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 2/155 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+ S+ +E  N  +  L+D+M E M S DG+GLAA Q+G+L RL+V
Sbjct: 1   MAIRNIRTDEDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D +D    ++    INP I T  +   V +EGCLSIP  + DVKR+  I V Y   + +
Sbjct: 61  VDDRD-EENQHRFYLINPVI-TRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            + I  +  LA  +QHE+DHL+GIL+ D   ++ R
Sbjct: 119 EEKINCEDFLARIIQHEIDHLDGILYTDRAEKMYR 153


>gi|257056762|ref|YP_003134594.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
 gi|256586634|gb|ACU97767.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
          Length = 166

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV + L  F DP+L+  + P+   +  I  L+D++L+ +      GLAA QIGV  R   
Sbjct: 1   MVMRDLRYFGDPVLKSPADPVTTFDDSIRALVDDLLDTVNLPGRAGLAAPQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP+++  S++     EGCLS+P       R+   TV+ +D   +
Sbjct: 61  YNVDGSIGY-----VLNPELVELSEEKHEVMEGCLSLPGLSFTTVRAQRATVKGVDLRNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +   GLLA CLQHE+DHL+G+L+ID L   +R    ++  
Sbjct: 116 PVTVSGSGLLAQCLQHEVDHLDGLLYIDRLEPQQRKQALREAR 158


>gi|257457589|ref|ZP_05622756.1| peptide deformylase [Treponema vincentii ATCC 35580]
 gi|257444975|gb|EEV20051.1| peptide deformylase [Treponema vincentii ATCC 35580]
          Length = 173

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 96/168 (57%), Gaps = 7/168 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++   +  LR+ S+P+E I+  +  LI  M   M   +GIGLAA QIG   RL ++ + D
Sbjct: 3   VLYLGEETLRQPSKPVEHIDEALHELIREMFITMDEDNGIGLAAPQIGKNVRLFIVKIDD 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R    VFINP I+  S+    Y+EGCLSIP   ADV R   +TV+Y D N + + I 
Sbjct: 63  GIER----VFINPLIVGTSEKQCSYEEGCLSIPKMFADVVRPEAVTVQYQDMNGRRRTIE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM---SKLVQLRD 170
           A GLLA  +QHE DHL G+LFID LS  +RD +  K     +  + R+
Sbjct: 119 ATGLLARVIQHEYDHLEGVLFIDRLSEKERDSLVAKFTQQQERKKQRE 166


>gi|119510121|ref|ZP_01629260.1| peptide deformylase [Nodularia spumigena CCY9414]
 gi|119465182|gb|EAW46080.1| peptide deformylase [Nodularia spumigena CCY9414]
          Length = 187

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/143 (42%), Positives = 88/143 (61%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I K++ +I  L   ML+ MYS+DGIGLAA Q+G+  +L+VID +    
Sbjct: 22  LGDRVLRQDAKRIAKVDDEIRQLAREMLQTMYSSDGIGLAAPQVGIHKQLIVIDCEPDNP 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+V INP I   S +  V QEGCLSIP    DVKR   + + Y D   + + + A  
Sbjct: 82  DHPPLVLINPTIKQMSKEVCVAQEGCLSIPKVYLDVKRPEAVEIAYKDEYGRPKTLKATD 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA C+QHE+DHL G++F+D + 
Sbjct: 142 LLARCIQHEMDHLKGVVFVDRVE 164


>gi|116328151|ref|YP_797871.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331396|ref|YP_801114.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|122280858|sp|Q04RW4|DEF_LEPBJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122284057|sp|Q051Q7|DEF_LEPBL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116120895|gb|ABJ78938.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125085|gb|ABJ76356.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 178

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 8/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++   D ILR+VS P+ +      +   LI +M + M   +G+GLAA QIG+L +
Sbjct: 1   MSVRKILRMGDSILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQ 60

Query: 58  LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +VV+  +D+    +       V +NP I   + D S + EGCLS+P  R  V+R   I +
Sbjct: 61  IVVVGSEDNERYPDTPNVPERVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKIRM 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           ++MD          DG  A   QHE DHL+GIL++D L   K
Sbjct: 121 QWMDEKGDRFDETIDGYKAVVYQHECDHLSGILYVDRLKDTK 162


>gi|282882057|ref|ZP_06290698.1| peptide deformylase [Peptoniphilus lacrimalis 315-B]
 gi|281298087|gb|EFA90542.1| peptide deformylase [Peptoniphilus lacrimalis 315-B]
          Length = 166

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 2/155 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+ S+ +E  N  +  L+D+M E M S DG+GLAA Q+G+L RL+V
Sbjct: 1   MAIRNIRTDEDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D +D    ++    INP I T  +   V +EGCLSIP  + DVKR+  I V Y   + +
Sbjct: 61  VDDRD-EENQHRFYLINPVI-TRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            + I     LA  +QHE+DHL+GIL+ D   ++ R
Sbjct: 119 EEKINCKDFLARIIQHEIDHLDGILYTDRAEKMYR 153


>gi|57237196|ref|YP_178208.1| peptide deformylase [Campylobacter jejuni RM1221]
 gi|86149710|ref|ZP_01067940.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86153727|ref|ZP_01071930.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597153|ref|ZP_01100388.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|148926356|ref|ZP_01810040.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|153951420|ref|YP_001397439.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|157414500|ref|YP_001481756.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|205356562|ref|ZP_03223325.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|218561870|ref|YP_002343649.1| peptide deformylase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|17432957|sp|Q9PIT8|DEF_CAMJE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|57166000|gb|AAW34779.1| peptide deformylase [Campylobacter jejuni RM1221]
 gi|85839978|gb|EAQ57237.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85842688|gb|EAQ59900.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88190214|gb|EAQ94188.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359576|emb|CAL34360.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|145844748|gb|EDK21853.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|152938866|gb|ABS43607.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|157385464|gb|ABV51779.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|205345567|gb|EDZ32207.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|284925483|gb|ADC27835.1| peptide deformylase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|307747142|gb|ADN90412.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni M1]
 gi|315057628|gb|ADT71957.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni S3]
 gi|315928123|gb|EFV07441.1| peptide deformylase [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930199|gb|EFV09314.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 305]
          Length = 175

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 96/158 (60%), Gaps = 3/158 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV-- 59
           + + ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R++  
Sbjct: 1   MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60

Query: 60  -VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            + D  D   +++ +  INP+II   ++     EGCLS+PD+  +VKR   I ++Y D  
Sbjct: 61  NIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            + + + A G LA  +QHE DHLNG LFI+ +S  KR 
Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158


>gi|56698050|ref|YP_168421.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
 gi|56679787|gb|AAV96453.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
          Length = 165

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 2/163 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L     P+E I  D  +LI +M + MY+  G GLAA Q+GV+ R  V
Sbjct: 1   MSVLPILTWPDARLSWRCDPVEGIVPD--DLIRDMFDTMYAAKGRGLAAPQVGVMQRFFV 58

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+       +PM  INP I+         +E CLSIP     V R   +TV++      
Sbjct: 59  MDVGWKEGPPSPMAMINPVIMAAERVPVEMEEVCLSIPGLSVPVTRPKAVTVQWTAPEGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             +   DG  A C+QHE DHLNG++ +DHL    R  +     
Sbjct: 119 IHMADFDGFEARCIQHEFDHLNGVVTLDHLDPRARAAMLSAYE 161


>gi|121612384|ref|YP_999910.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004870|ref|ZP_02270628.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250043|gb|EAQ73001.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 175

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 98/158 (62%), Gaps = 3/158 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R++++
Sbjct: 1   MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60

Query: 62  DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++    D   +++ +  INP+II   ++     EGCLS+PD+  +VKR   I ++Y D  
Sbjct: 61  NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            + + + A G LA  +QHE DHLNG LFI+ +S  KR 
Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158


>gi|229162803|ref|ZP_04290760.1| Peptide deformylase 1 [Bacillus cereus R309803]
 gi|228620685|gb|EEK77554.1| Peptide deformylase 1 [Bacillus cereus R309803]
          Length = 156

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTGKIE---LINPAILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|225418638|ref|ZP_03761827.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme
           DSM 15981]
 gi|225041834|gb|EEG52080.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme
           DSM 15981]
          Length = 165

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+  +P++++      LI++M E MY  +G+GLAA Q+G+L +LVV
Sbjct: 3   MAIRQIRTIGDEILRKQCKPVKEMTPRTAELIEDMFETMYEANGVGLAAPQVGILRQLVV 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     N  V INP+I+          EGCLS+P     V R   + V+ ++   +
Sbjct: 63  IDVDD----GNQYVLINPEILETEGS-QTGSEGCLSVPGKSGTVTRPMHVKVKALNEKLE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  DGLLA  + HE+ HL G L++D
Sbjct: 118 PYELEGDGLLARAICHEIAHLRGELYVD 145


>gi|196047434|ref|ZP_03114646.1| peptide deformylase [Bacillus cereus 03BB108]
 gi|229186107|ref|ZP_04313276.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1]
 gi|196021742|gb|EDX60437.1| peptide deformylase [Bacillus cereus 03BB108]
 gi|228597283|gb|EEK54934.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1]
          Length = 156

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVRHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|124386084|ref|YP_001029186.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|126448140|ref|YP_001080884.1| peptide deformylase [Burkholderia mallei NCTC 10247]
 gi|254358101|ref|ZP_04974374.1| peptide deformylase [Burkholderia mallei 2002721280]
 gi|124294104|gb|ABN03373.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|126241010|gb|ABO04103.1| peptide deformylase [Burkholderia mallei NCTC 10247]
 gi|148027228|gb|EDK85249.1| peptide deformylase [Burkholderia mallei 2002721280]
          Length = 177

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E  N  ++  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP I     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSLPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           D         A+G  A  +QHE DHL G L+   ++   +   
Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGF 163


>gi|296119004|ref|ZP_06837577.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295968102|gb|EFG81354.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 202

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 8/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + +VI  DP+L   + P+ +   + ++  LI +M E M +  G+GLAA Q+G+  RL
Sbjct: 7   MTIRAIVIHGDPVLHNPTEPVTEAIDSPELQTLIADMCETMAAAHGVGLAANQVGIAKRL 66

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITV 112
            V D  D     +    INP + T         D     EGCLS+P       R+ +  V
Sbjct: 67  FVYDCPDDDGHMHKGCIINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWAKV 126

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   +   +   G  A CLQHE+ HL+GI++ D L    +    K +  
Sbjct: 127 TGLNEKGEDIEVEGTGFFARCLQHEVGHLDGIVYTDTLIGRNKRAAKKTIKA 178


>gi|75765204|pdb|1SZZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765205|pdb|1SZZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765206|pdb|1SZZ|C Chain C, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765207|pdb|1SZZ|D Chain D, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765208|pdb|1SZZ|E Chain E, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765209|pdb|1SZZ|F Chain F, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765210|pdb|1SZZ|G Chain G, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
 gi|75765211|pdb|1SZZ|H Chain H, Crystal Structure Of Peptide Deformylase From Leptospira
           Interrogans Complexed With Inhibitor Actinonin
          Length = 177

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
            + ++   DPILR++S P+ +      +   LI +M   M   +G+GLAA QIG+L ++V
Sbjct: 2   VRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFTTMRHAEGVGLAAPQIGILKQIV 61

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           V+  +D+            + +NP I   + D S + EGCLS+P  R  V+R   I +++
Sbjct: 62  VVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQW 121

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           MD          DG  A   QHE DHL GIL++D L   K
Sbjct: 122 MDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161


>gi|125973086|ref|YP_001036996.1| peptide deformylase [Clostridium thermocellum ATCC 27405]
 gi|256004589|ref|ZP_05429567.1| peptide deformylase [Clostridium thermocellum DSM 2360]
 gi|281417281|ref|ZP_06248301.1| peptide deformylase [Clostridium thermocellum JW20]
 gi|158513246|sp|A3DCX4|DEF_CLOTH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|125713311|gb|ABN51803.1| peptide deformylase [Clostridium thermocellum ATCC 27405]
 gi|255991461|gb|EEU01565.1| peptide deformylase [Clostridium thermocellum DSM 2360]
 gi|281408683|gb|EFB38941.1| peptide deformylase [Clostridium thermocellum JW20]
 gi|316940693|gb|ADU74727.1| peptide deformylase [Clostridium thermocellum DSM 1313]
          Length = 170

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 90/153 (58%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D ILR+VS+ ++ I+  I  L+D+M E MY+ +G+GLAA Q+GVL R+VV
Sbjct: 1   MAVRFIREDGDEILRKVSKKVDVIDERIKTLLDDMAETMYAANGVGLAAPQVGVLKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       M  INP+I+    +  +  EGCLSIP    +VKR A + V  ++   +
Sbjct: 61  IDVGD-----GLMELINPEIVEQEGE-QIDIEGCLSIPGVAGEVKRPARVVVEALNREGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +    LLA  L HE+DHL+GILF D + R 
Sbjct: 115 KITVEGKELLAVALCHEIDHLDGILFTDKVIRF 147


>gi|295676828|ref|YP_003605352.1| peptide deformylase [Burkholderia sp. CCGE1002]
 gi|295436671|gb|ADG15841.1| peptide deformylase [Burkholderia sp. CCGE1002]
          Length = 177

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L R++ P++  +  ++  L+++M E M++ +G GLAA QIGV  ++V+
Sbjct: 1   MIHDILKMGDPRLLRIAEPVDHFDTPELHRLVEDMFETMHAANGAGLAAPQIGVNLQVVI 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGSNERYPDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D         A+G  A  +QHE DHL G L+   ++   +   T+
Sbjct: 121 DQFGNPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSKFGFTE 165


>gi|221194831|ref|ZP_03567888.1| peptide deformylase [Atopobium rimae ATCC 49626]
 gi|221185735|gb|EEE18125.1| peptide deformylase [Atopobium rimae ATCC 49626]
          Length = 183

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 93/163 (57%), Gaps = 1/163 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V++PD  L      I +I  +I ++   ML+ MY+TDG+GLAA QIG+L R+VVID+ 
Sbjct: 6   EIVLWPDERLTDTCEEISEITDEIRDIAKRMLQDMYATDGVGLAAPQIGILKRMVVIDVD 65

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               +KNP V INP++IT   +   Y EGCLS P     V R + + V   + +      
Sbjct: 66  YPDGQKNPFVLINPEVITADGEPRTYNEGCLSFPGITVPVTRPSHVVVHAQNLDGDLMQY 125

Query: 125 YADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            A+G L A CLQHE+DH+NGI   DHL    R  + ++  + +
Sbjct: 126 EAEGDLFAVCLQHEIDHINGITMPDHLGPTARMEVLQRYHEAL 168


>gi|332876814|ref|ZP_08444571.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685240|gb|EGJ58080.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 193

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 15/182 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+  + + +L+  ++ +     ++  LI NM E M   +G GLAA Q+G   RL V 
Sbjct: 1   MKLPIFAYGNNVLKVKAQAVASDFPNLHELIANMWETMEKANGCGLAAPQVGKSLRLFVA 60

Query: 62  DLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           D Q               +         FINP+I   S++     EGCLS+P     V R
Sbjct: 61  DSQLLYEAMDERDKIAYFEKGDTGIRRAFINPQIKNLSEEQWEEAEGCLSLPFLSGKVAR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           S  + + Y +   +       G+ A  + HE DHL GIL+ID +  L + ++  K+ KL+
Sbjct: 121 SWSVELSYQNEQFETITETFSGMTARVILHEYDHLEGILYIDRVKPLAKKLMQSKLQKLL 180

Query: 167 QL 168
           + 
Sbjct: 181 KG 182


>gi|229031497|ref|ZP_04187497.1| Peptide deformylase [Bacillus cereus AH1271]
 gi|228729786|gb|EEL80766.1| Peptide deformylase [Bacillus cereus AH1271]
          Length = 156

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLQGVLFTSKVTR 148


>gi|224419234|ref|ZP_03657240.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|253826952|ref|ZP_04869837.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|313142736|ref|ZP_07804929.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|253510358|gb|EES89017.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
 gi|313131767|gb|EFR49384.1| peptide deformylase [Helicobacter canadensis MIT 98-5491]
          Length = 168

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 105/167 (62%), Gaps = 4/167 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++ +P+PILR++S+PIE  N  +  L+D+M EVM   +G+G++A+Q+    R ++I L 
Sbjct: 3   EVITYPNPILRQISQPIEVFNESLHELLDSMYEVMLQKNGVGISAIQVAKPIRALLICLP 62

Query: 65  DHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D     H+++ +  INP+I+    +  ++ EGCLS+P++  +VKR++ + V Y D     
Sbjct: 63  DEEGNQHKEDLLEIINPQILEKDGEI-IFNEGCLSVPEFYEEVKRASSLKVAYQDRYGNP 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + + A   LA  LQHE+DHLNGILFID LS LKR    K++ +  + 
Sbjct: 122 KEMEAKDYLAVALQHEIDHLNGILFIDKLSILKRKKFEKELKQKRKG 168


>gi|94310371|ref|YP_583581.1| peptide deformylase [Cupriavidus metallidurans CH34]
 gi|93354223|gb|ABF08312.1| polypeptide or peptide deformylase [Cupriavidus metallidurans CH34]
          Length = 177

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L + +RP+ + N  ++  LID+M + M   +G GLAA QIGV  ++V+
Sbjct: 1   MIRDILKMGDARLLQQARPVTQFNTPELRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP +   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNPRYPDAPTVPKTVLINPSLEPLSDEMDDGWEGCLSVPGLRGVVPRYTRLKYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D         A+   A  +QHE DHL G+L+   +    R   T+
Sbjct: 121 DMMGNRIERVAEDFHARVVQHECDHLIGVLYPMRIKDFTRFGFTE 165


>gi|311029970|ref|ZP_07708060.1| peptide deformylase [Bacillus sp. m3-13]
          Length = 159

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P P+L +    +   +  ++ L+ NM + M   DG+GLAA QIG+  R+ +
Sbjct: 1   MTILDIVKYPAPVLEQNCEAVTVFDKRLIRLLSNMYDTMLEADGVGLAAPQIGIAKRIAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP+I+    +  V  EGCLS PD   +VKR+ ++ VR  +   +
Sbjct: 61  VDIDDKHGKIE---LINPEIVDEEGE-QVGPEGCLSFPDLYGEVKRADYVKVRAQNRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + A G LA  +QHE+DHLNG+LF   +
Sbjct: 117 WYELEARGFLARAIQHEIDHLNGVLFTSKV 146


>gi|46199964|ref|YP_005631.1| polypeptide deformylase, fms protein-like protein [Thermus
           thermophilus HB27]
 gi|55980290|ref|YP_143587.1| peptide deformylase [Thermus thermophilus HB8]
 gi|1169265|sp|P43522|DEF_THETH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81678630|sp|Q5SLH2|DEF_THET8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81699227|sp|Q72H33|DEF_THET2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|602914|emb|CAA55695.1| N-formylmethionylaminoacyl-tRNA deformylase [Thermus thermophilus]
 gi|46197591|gb|AAS82004.1| polypeptide deformylase, fms protein-like protein [Thermus
           thermophilus HB27]
 gi|55771703|dbj|BAD70144.1| polypeptide deformylase [Thermus thermophilus HB8]
          Length = 192

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 14/171 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           +  P+ ++ DP+LRR +RP+E   S I  L ++MLE M+   G+GLAA QIG+  RL V 
Sbjct: 1   MVYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVA 59

Query: 61  --IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAF 109
                +     + P+        V  NP I T+ +      EGCLS+P  Y  +V R+  
Sbjct: 60  VEYADEPEGEEERPLRELVRRVYVVANPVI-TYREGLVEGTEGCLSLPGLYSEEVPRAER 118

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           I V Y D   + +++  +G +A   QHE+DHL+GILF + L + KR+   +
Sbjct: 119 IRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLE 169


>gi|256392284|ref|YP_003113848.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
 gi|256358510|gb|ACU72007.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
          Length = 188

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 6/162 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + + +F DP+L   + P+   + ++  L+ ++ E M    G GLAA QIGV  R+   
Sbjct: 8   TVQAIRLFGDPVLTTPATPVVDFDKELRTLVKDLTETMLDAPGSGLAAPQIGVGLRVFTW 67

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +          +NP +   SD+     EGCLSIPD     KR+  +  +    + + 
Sbjct: 68  NVDNELG-----HLVNPTLD-LSDEEQDGDEGCLSIPDLAFPCKRALRVVAKGWTMHGEP 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             +    +LA C+QHE DHL+G+LFID L R  R    + + 
Sbjct: 122 VEVEGSEMLARCIQHETDHLDGVLFIDRLDREWRKKAMRAIR 163


>gi|157964561|ref|YP_001499385.1| polypeptide deformylase [Rickettsia massiliae MTU5]
 gi|157844337|gb|ABV84838.1| Polypeptide deformylase [Rickettsia massiliae MTU5]
          Length = 189

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/163 (39%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 16  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 75

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 76  N-NKSSPIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 134

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+D+LNG +F+D+LS+LKRD + KKM K ++L
Sbjct: 135 AEGFLATVIQHEIDYLNGKIFLDYLSKLKRDTLLKKMLKHIKL 177


>gi|39998545|ref|NP_954496.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
 gi|39985492|gb|AAR36846.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
 gi|298507488|gb|ADI86211.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens
           KN400]
          Length = 169

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 104/170 (61%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + ++ +P P+L++V   +  I+  I  LID+++E M    G +G+AA QIGV  R+ 
Sbjct: 1   MPAQTILQYPHPVLKKVCHTVTAIDEAIRGLIDDLIETMREGPGSVGVAAPQIGVTLRVC 60

Query: 60  VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           VID+    H K+     ++ +NP+I+  S + +V +EGC+S+PDY  DV+RS  + VR++
Sbjct: 61  VIDVSGSRHGKDNNHGLLLMVNPEIVDRSGN-AVMREGCMSVPDYTGDVERSTEVRVRFL 119

Query: 116 D-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D  +   + I A G  A  +QHE+DHL+GILF+D +  +K  +  +K  K
Sbjct: 120 DGADGSEREITASGFEAVAIQHEMDHLDGILFLDRIVSIKTGLFRRKNYK 169


>gi|194334376|ref|YP_002016236.1| peptide deformylase [Prosthecochloris aestuarii DSM 271]
 gi|238693348|sp|B4S9B9|DEF_PROA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194312194|gb|ACF46589.1| peptide deformylase [Prosthecochloris aestuarii DSM 271]
          Length = 186

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+ D +LRR ++P++ I++    LI NM+E M +  GIGLAA QIG+  RL+++
Sbjct: 1   MILPITIYSDEVLRRKAKPLKGIDTSHEELIGNMIESMRNASGIGLAAPQIGLSMRLLIV 60

Query: 62  DLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           DL      +N  PMV INP I+     ++  +EGCLSIPD  ADV R + I ++Y + + 
Sbjct: 61  DLSPVQGYENAEPMVVINPHILAVKG-YNAMEEGCLSIPDIHADVVRPSSIQLKYRNEHF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + ++     L+A  LQHE+DHL+G LF+D L R  R  + K +  +   +
Sbjct: 120 EERVDEFSALMARVLQHEIDHLDGTLFVDKLQRRDRRKVQKSLEDIAAGK 169


>gi|53719772|ref|YP_108758.1| peptide deformylase [Burkholderia pseudomallei K96243]
 gi|53723743|ref|YP_103199.1| peptide deformylase [Burkholderia mallei ATCC 23344]
 gi|76809016|ref|YP_333979.1| peptide deformylase [Burkholderia pseudomallei 1710b]
 gi|121601445|ref|YP_993377.1| peptide deformylase [Burkholderia mallei SAVP1]
 gi|126440852|ref|YP_001059473.1| peptide deformylase [Burkholderia pseudomallei 668]
 gi|126452569|ref|YP_001066757.1| peptide deformylase [Burkholderia pseudomallei 1106a]
 gi|134277462|ref|ZP_01764177.1| peptide deformylase [Burkholderia pseudomallei 305]
 gi|167004075|ref|ZP_02269849.1| peptide deformylase [Burkholderia mallei PRL-20]
 gi|167720172|ref|ZP_02403408.1| peptide deformylase [Burkholderia pseudomallei DM98]
 gi|167739177|ref|ZP_02411951.1| peptide deformylase [Burkholderia pseudomallei 14]
 gi|167816388|ref|ZP_02448068.1| peptide deformylase [Burkholderia pseudomallei 91]
 gi|167824767|ref|ZP_02456238.1| peptide deformylase [Burkholderia pseudomallei 9]
 gi|167846298|ref|ZP_02471806.1| peptide deformylase [Burkholderia pseudomallei B7210]
 gi|167894880|ref|ZP_02482282.1| peptide deformylase [Burkholderia pseudomallei 7894]
 gi|167903269|ref|ZP_02490474.1| peptide deformylase [Burkholderia pseudomallei NCTC 13177]
 gi|167911509|ref|ZP_02498600.1| peptide deformylase [Burkholderia pseudomallei 112]
 gi|167919519|ref|ZP_02506610.1| peptide deformylase [Burkholderia pseudomallei BCC215]
 gi|217421605|ref|ZP_03453109.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|237812813|ref|YP_002897264.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|238563756|ref|ZP_00438343.2| peptide deformylase [Burkholderia mallei GB8 horse 4]
 gi|242316254|ref|ZP_04815270.1| peptide deformylase [Burkholderia pseudomallei 1106b]
 gi|254178715|ref|ZP_04885370.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|254179317|ref|ZP_04885916.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|254189297|ref|ZP_04895808.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254197856|ref|ZP_04904278.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|254200152|ref|ZP_04906518.1| peptide deformylase [Burkholderia mallei FMH]
 gi|254206490|ref|ZP_04912842.1| peptide deformylase [Burkholderia mallei JHU]
 gi|254258903|ref|ZP_04949957.1| peptide deformylase [Burkholderia pseudomallei 1710a]
 gi|254297203|ref|ZP_04964656.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
 gi|52210186|emb|CAH36165.1| putative deformylase [Burkholderia pseudomallei K96243]
 gi|52427166|gb|AAU47759.1| polypeptide deformylase [Burkholderia mallei ATCC 23344]
 gi|76578469|gb|ABA47944.1| polypeptide deformylase [Burkholderia pseudomallei 1710b]
 gi|121230255|gb|ABM52773.1| polypeptide deformylase [Burkholderia mallei SAVP1]
 gi|126220345|gb|ABN83851.1| peptide deformylase [Burkholderia pseudomallei 668]
 gi|126226211|gb|ABN89751.1| peptide deformylase [Burkholderia pseudomallei 1106a]
 gi|134251112|gb|EBA51191.1| peptide deformylase [Burkholderia pseudomallei 305]
 gi|147749748|gb|EDK56822.1| peptide deformylase [Burkholderia mallei FMH]
 gi|147753933|gb|EDK60998.1| peptide deformylase [Burkholderia mallei JHU]
 gi|157806966|gb|EDO84136.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
 gi|157936976|gb|EDO92646.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|160699754|gb|EDP89724.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|169654597|gb|EDS87290.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|184209857|gb|EDU06900.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|217395347|gb|EEC35365.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|237504956|gb|ACQ97274.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|238520038|gb|EEP83502.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
 gi|242139493|gb|EES25895.1| peptide deformylase [Burkholderia pseudomallei 1106b]
 gi|243060514|gb|EES42700.1| peptide deformylase [Burkholderia mallei PRL-20]
 gi|254217592|gb|EET06976.1| peptide deformylase [Burkholderia pseudomallei 1710a]
          Length = 177

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E  N  ++  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP I     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           D         A+G  A  +QHE DHL G L+   ++   +   
Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGF 163


>gi|288802833|ref|ZP_06408270.1| peptide deformylase [Prevotella melaninogenica D18]
 gi|288334650|gb|EFC73088.1| peptide deformylase [Prevotella melaninogenica D18]
          Length = 186

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/174 (36%), Positives = 93/174 (53%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR+V+  I     D+  LI NM E   ++DG+GLAA QIG   R+VV+
Sbjct: 1   MVLPIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVV 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           DL         ++     FIN  I+ + D +    +EGCLS+P     V R+  I V++ 
Sbjct: 61  DLDVLSDTFPEYKDYRHAFINGHILEYDDSETETLEEGCLSLPGIHESVTRAKRIYVKWY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N      + DG LA  +QHE DHL G +F D LS  ++ MI  K+  L+Q +
Sbjct: 121 DENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMINSKLKALLQGK 174


>gi|87303617|ref|ZP_01086396.1| Formylmethionine deformylase [Synechococcus sp. WH 5701]
 gi|87281841|gb|EAQ73805.1| Formylmethionine deformylase [Synechococcus sp. WH 5701]
          Length = 232

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 6/171 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M ++ ++   DP LR+VSRP+ +    +++ LI ++ + M + DG GLAA QI V  R+V
Sbjct: 10  MAERTVLRLGDPRLRQVSRPVTRFGTPELLALITDLRDTMAARDGAGLAAPQIAVPLRVV 69

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +  +        A      V INP+I           EGCLS+P  R  V R   I  R 
Sbjct: 70  IFGITVNPRYPEAPPIPETVLINPEITPIDQACDSGWEGCLSVPGLRGQVSRWRRIHYRG 129

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            D           G  A  +QHE DHL+G+LF D L   +    T+++   
Sbjct: 130 FDAEGHLIARSVAGFHARVVQHECDHLDGVLFPDRLEDTRALGFTEELEAW 180


>gi|307722030|ref|YP_003893170.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294]
 gi|306980123|gb|ADN10158.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294]
          Length = 174

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 101/171 (59%), Gaps = 4/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  +V +PD  LR+ S  +++ ++ +  L+D M  +M +T+GIGLAA+Q+    R +++
Sbjct: 1   MKLNIVEYPDKTLRKKSCEVKEFDASLHKLLDAMNPLMINTNGIGLAAIQVAYPIRALIL 60

Query: 62  DLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ D    + P   +  INP +   S +   YQEGCLS+P +  D+KR   + + Y D  
Sbjct: 61  NVPDEDGEQPPENLLEIINPVMTHKSGET-TYQEGCLSVPQFYEDIKRYDNVVINYQDRY 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + + ADGLLA  +QHE+DHL GILFID LS  +R    K+  ++ + +
Sbjct: 120 GNTKTLDADGLLAIAIQHEMDHLEGILFIDKLSYARRKKFEKEYKRMQKEK 170


>gi|302335855|ref|YP_003801062.1| peptide deformylase [Olsenella uli DSM 7084]
 gi|301319695|gb|ADK68182.1| peptide deformylase [Olsenella uli DSM 7084]
          Length = 180

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 93/164 (56%), Gaps = 1/164 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +V  PD  LR    PIEKI++ +  L   MLE MY+T+G+GLAA Q+G L +LVVI
Sbjct: 3   AFEEIVTAPDERLRTECAPIEKIDNKVRLLAKRMLEDMYATEGVGLAAPQVGELVQLVVI 62

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     +++P V INP+++    D  V  EGCLS P     V R + + V  +D +   
Sbjct: 63  DVDYADGKRSPYVLINPRVVVADGDEVVGSEGCLSFPGITVQVSRPSHVVVEALDLDGDL 122

Query: 122 QIIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                 + LLA CLQHE+DHL+GI  +DHLS  +R    +   +
Sbjct: 123 MRYEARNNLLAVCLQHEIDHLHGITMLDHLSPARRVAAMRDYQE 166


>gi|126733795|ref|ZP_01749542.1| formylmethionine deformylase [Roseobacter sp. CCS2]
 gi|126716661|gb|EBA13525.1| formylmethionine deformylase [Roseobacter sp. CCS2]
          Length = 166

 Score =  181 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P V++P P LR  + P+  I  ++  + D M+  M +  G+GLAA Q+GV   L V
Sbjct: 1   MTHRPFVMWPHPALRTAATPVAVITDEVRAIWDEMIVAMDTMPGVGLAAPQLGVEMALAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R   +   NP I+  S +  V++EG  ++P   A V R   +TVR+++ + Q
Sbjct: 61  IDASE--ERGQAIRMANPTILHSSVEPRVHEEGSPNLPGVWAKVTRPRAVTVRFLNADGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  GL AT +QH++DHL+G +F DHL+R+KRDM+ KK +KL + 
Sbjct: 119 WDRQDFVGLWATSVQHQIDHLSGKMFFDHLTRVKRDMLIKKSAKLRRG 166


>gi|325529284|gb|EGD06233.1| peptide deformylase [Burkholderia sp. TJI49]
          Length = 177

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E+ +  ++  ++ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGVGLQIII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPEAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D         A+G  A  +QHE DHL G L+   ++   R   T+ +
Sbjct: 121 DQFGAKLDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167


>gi|148240477|ref|YP_001225864.1| peptide deformylase [Synechococcus sp. WH 7803]
 gi|147849016|emb|CAK24567.1| Peptide deformylase [Synechococcus sp. WH 7803]
          Length = 201

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/151 (40%), Positives = 90/151 (59%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +    D +LR  +R I K++  + +L  +ML  MY+  GIGLAA Q+GV  +L+VI
Sbjct: 29  APLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVHQQLLVI 88

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL        P+V INP+I + S     Y+EGCLSIP    DV R + + V + D   + 
Sbjct: 89  DLDPETASSPPLVLINPEITSASASLETYEEGCLSIPGVYLDVVRPSAVQVSFRDEMGRP 148

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + + ADGL+A C+QHE+DHL G+LF+D ++ 
Sbjct: 149 RTMKADGLMARCIQHEMDHLTGVLFVDRVTD 179


>gi|228992595|ref|ZP_04152522.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442]
 gi|228998643|ref|ZP_04158230.1| Peptide deformylase [Bacillus mycoides Rock3-17]
 gi|229006144|ref|ZP_04163831.1| Peptide deformylase [Bacillus mycoides Rock1-4]
 gi|228755097|gb|EEM04455.1| Peptide deformylase [Bacillus mycoides Rock1-4]
 gi|228761111|gb|EEM10070.1| Peptide deformylase [Bacillus mycoides Rock3-17]
 gi|228767229|gb|EEM15865.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442]
          Length = 158

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 4/162 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD +L      +   +  ++NL+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPDEVLETPCERVMNFDKKLVNLLKDMHETMLVADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTGKIE---LINPVILEKRGE-QVGPEGCLSFPGLYGEVERAEYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             ++ AD  LA  +QHE+DHL+G+LF   ++R   +   ++M
Sbjct: 117 IFLLEADDFLARAIQHEIDHLHGVLFTSKVTRYYEENELEEM 158


>gi|312898702|ref|ZP_07758092.1| peptide deformylase [Megasphaera micronuciformis F0359]
 gi|310620621|gb|EFQ04191.1| peptide deformylase [Megasphaera micronuciformis F0359]
          Length = 176

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    P+L++ + P++ I   +  L+D+M E MYS +G+GLAA Q+    ++VV
Sbjct: 23  MSALRIVKDGAPVLKKTAAPVKTITKRVKRLLDDMAETMYSAEGVGLAAPQVNESLQIVV 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D          +  INP+I+  S++     EGCLS+P    DV R   I V+  +   +
Sbjct: 83  LD-----DGNGLIELINPEILDVSEETEYGPEGCLSVPGIYGDVSRYTKIKVQAKNRFGK 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             I   +G LA   QHE+DHL G LF +    L++
Sbjct: 138 TVIYEPEGFLARIFQHEMDHLKGHLFTEKAVNLRK 172


>gi|228922621|ref|ZP_04085921.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837050|gb|EEM82391.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 156

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ +
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDVDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|118479089|ref|YP_896240.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam]
 gi|118418314|gb|ABK86733.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam]
          Length = 156

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVMNFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|115352107|ref|YP_773946.1| peptide deformylase [Burkholderia ambifaria AMMD]
 gi|115282095|gb|ABI87612.1| peptide deformylase [Burkholderia ambifaria AMMD]
          Length = 177

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V++P+ + +  ++  ++ +M E M+  +G GLAA QIG+  +L++
Sbjct: 1   MIREILKMGDPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D         A+G  A  +QHE DHL G L+   ++   R   T+ +
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167


>gi|307244489|ref|ZP_07526598.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678]
 gi|306492182|gb|EFM64226.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678]
          Length = 151

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   +P+L + S+ +   N  +  L+D+M + MY  DG+GLAA Q+GVL R VV
Sbjct: 1   MAIRNILKMGEPLLNKKSKQVVDFNDRLHTLLDDMADTMYKEDGVGLAAPQVGVLRRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +       +  INP I+  S +     EGCLS+ DY  +V R  ++ V+  D   +
Sbjct: 61  VDIGE-----GLIELINPVIVETSGE-QTDLEGCLSVVDYIGEVTRPNYVKVKAQDRFGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              +  +G LA    HE+DHL GILF++ +   ++
Sbjct: 115 DIEVEGEGFLARAFCHEIDHLEGILFVERVEDTEK 149


>gi|160939813|ref|ZP_02087160.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437247|gb|EDP15012.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC
           BAA-613]
          Length = 161

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL +  +P++ +N   M LI++M E MY  +G GLAA Q+GVL ++V 
Sbjct: 1   MAVRQIRIMGDEILTKKCKPVKAMNDRTMELIEDMFETMYQANGCGLAAPQVGVLKQIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     N  V INP+I T +D      EGCLS+P     V R  ++ V+ ++ N +
Sbjct: 61  IDVDD----GNQYVLINPEI-TATDGSQTGYEGCLSLPGKSGIVTRPNYVKVKALNENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA  + HE  HL G ++++ + 
Sbjct: 116 PYELEGEGLLARAICHECAHLEGQMYVELVE 146


>gi|256832092|ref|YP_003160819.1| peptide deformylase [Jonesia denitrificans DSM 20603]
 gi|256685623|gb|ACV08516.1| peptide deformylase [Jonesia denitrificans DSM 20603]
          Length = 215

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 13/171 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI  DP+LR+ +  + + +  ++ L+ +M + M  ++G+GLAA QIGV  R+ V 
Sbjct: 1   MIHPIVIDGDPVLRQRAAEVTEFDDALVQLVADMYDTMRVSNGVGLAAPQIGVGQRIFVF 60

Query: 62  DLQDHAHRK-----NPMVFI--NPKIITFSDD------FSVYQEGCLSIPDYRADVKRSA 108
           D  D   ++     NP + I   P       +           EGCLS P    + KR  
Sbjct: 61  DAPDEDEQRRGVVVNPSLMIVQRPPRFALKGEGKRPPKSLTDVEGCLSFPGPDFEAKRHY 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            + V   D + +  +I  +G  A  LQHE DHL+G+L++D L    +    
Sbjct: 121 AVRVTGWDEHGEPVVIDGEGWFARVLQHEYDHLDGLLYVDRLKGRDKAEAR 171


>gi|221633590|ref|YP_002522816.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
 gi|254767609|sp|B9L0C1|DEF_THERP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|221156095|gb|ACM05222.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
          Length = 176

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 5/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   DP LR+ +  I  ++ ++  L  ++ + + +  G+GLAA QIGVL R++V
Sbjct: 1   MAVRTIITEGDPRLRQKAIRIRVVDEEVRQLARDLWDTVRAARGLGLAAPQIGVLRRIIV 60

Query: 61  IDLQ-DHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           + +  D+    +P V    INP+I+  S    V  EGCLSIP +  +V RS  +TV+ +D
Sbjct: 61  VAIPPDYVEEGDPGVELTLINPEIVRASG-RQVGLEGCLSIPGWYGEVPRSMHVTVKALD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + +   +   GLLA  LQHE+DHL GILF+D +  
Sbjct: 120 LDGREVRVKGSGLLARVLQHEIDHLEGILFVDRIED 155


>gi|78224736|ref|YP_386483.1| formylmethionine deformylase [Geobacter metallireducens GS-15]
 gi|78195991|gb|ABB33758.1| Formylmethionine deformylase [Geobacter metallireducens GS-15]
          Length = 168

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/166 (37%), Positives = 103/166 (62%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  +P++ +P P+L++VS  +  I+ +I  LID++L+ M +  G +G+AA QIG   R+ 
Sbjct: 1   MPAQPILCYPHPVLKKVSHAVAVIDDEIRGLIDDLLDTMRAGPGSVGVAAPQIGATLRVC 60

Query: 60  VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+    H K      +V +NP+I+   +  ++ +EGC+S+PDY  DV+R+  ITVR+ 
Sbjct: 61  VVDVSGSRHGKENNHGVLVMVNPEIV-HREGAAIMREGCMSVPDYTGDVERATTITVRFR 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           D     + I A G  A  +QHE+DHL+GILF+D +  LK  +  +K
Sbjct: 120 DGEGTEREISASGFEAVAIQHEMDHLDGILFLDRIVSLKTGLFRRK 165


>gi|68535326|ref|YP_250031.1| peptide deformylase [Corynebacterium jeikeium K411]
 gi|260578459|ref|ZP_05846373.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
 gi|68262925|emb|CAI36413.1| polypeptide deformylase [Corynebacterium jeikeium K411]
 gi|258603481|gb|EEW16744.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
          Length = 193

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M   P+VI  DP+L   +  ++     D+  LI +M E + + +G+GLAA Q+GV  R  
Sbjct: 1   MTIMPIVICGDPVLHNPTTKVDPSEIPDLAPLIADMYETLSAANGVGLAANQVGVNKRFF 60

Query: 60  VIDLQDHA-HRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V D  D           INP     +I     D    +EGCLS+P Y     R+ +  V 
Sbjct: 61  VYDCPDTERGEMRRGCVINPVLETSEIPETMPDEEEDEEGCLSVPGYSFPTGRADWARVT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +D N +   +   G  A CLQHE+ HL+G L+ID L    +    K +  
Sbjct: 121 GLDENGEEVTVEGTGFFARCLQHEVGHLDGFLYIDTLIGRWKRKSKKAVKA 171


>gi|307729328|ref|YP_003906552.1| peptide deformylase [Burkholderia sp. CCGE1003]
 gi|307583863|gb|ADN57261.1| peptide deformylase [Burkholderia sp. CCGE1003]
          Length = 177

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L R++ P++  +  ++  LI +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +     A+G  A  +QHE DHL G L+   ++   +   T+ +
Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAKFGFTEVL 167


>gi|168055848|ref|XP_001779935.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668649|gb|EDQ55252.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 202

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 10/176 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++++PDP LR  ++ I+  +  +  L++ ML+VMY TDG+GLAA Q+GV  RL+V +  
Sbjct: 12  EVILYPDPRLRAKNKFIKVFDDKLQQLVNEMLDVMYKTDGVGLAAPQVGVNVRLMVYNPS 71

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP----------DYRADVKRSAFITVRY 114
                    V +NP+I+ +     ++ EGCLS P             A+V+R   + +  
Sbjct: 72  GERGSGKEYVLVNPRIVKYGKSRDLFDEGCLSFPVLERGPNQSLTIEAEVERPKSVRIDA 131

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            D   +   I      A   QHE DHL GIL+ D ++    D I  ++ KL +L +
Sbjct: 132 QDIKGKKFSINLKDFQARIFQHEYDHLEGILYFDRMTPEVLDTIRPELEKLEKLYE 187


>gi|327200562|pdb|3M6Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41q Mutant In Complex With
           Actinonin
          Length = 193

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 89/163 (54%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PDPILR  ++ I+  + ++ NL+D M +VMY TD IGL+A Q+G+  +L+V +  
Sbjct: 2   EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDQIGLSAPQVGLNVQLMVFNPA 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I
Sbjct: 62  GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               L A   QHE DHL G+LF D ++    D I +++  L +
Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 164


>gi|83719851|ref|YP_442547.1| peptide deformylase [Burkholderia thailandensis E264]
 gi|167581474|ref|ZP_02374348.1| peptide deformylase [Burkholderia thailandensis TXDOH]
 gi|167619583|ref|ZP_02388214.1| peptide deformylase [Burkholderia thailandensis Bt4]
 gi|257138756|ref|ZP_05587018.1| peptide deformylase [Burkholderia thailandensis E264]
 gi|83653676|gb|ABC37739.1| polypeptide deformylase [Burkholderia thailandensis E264]
          Length = 177

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E  N  ++  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVESFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP +     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPSVEYLPPDMEDGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           D         A+G  A  +QHE DHL G L+   ++   +   T
Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGFT 164


>gi|283955632|ref|ZP_06373125.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792857|gb|EFC31633.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 175

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 95/158 (60%), Gaps = 3/158 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR---L 58
           + + ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R   +
Sbjct: 1   MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRALLV 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            + D  D   +++ +  INP+II   ++     EGCLS+PD+  +VKR   I ++Y D  
Sbjct: 61  NIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            + + + A G LA  +QHE DHLNG LFI+ +S  KR 
Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158


>gi|198282740|ref|YP_002219061.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666795|ref|YP_002424934.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247261|gb|ACH82854.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519008|gb|ACK79594.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 167

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 95/164 (57%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M   P++ +PD  L+R + P+   + D+ + ID++ E MY+  G +G+AA Q+    R+V
Sbjct: 1   MAVLPILTYPDSRLQRKADPVSVFDDDLHHFIDDLTETMYAGPGGVGIAAPQVDRAQRIV 60

Query: 60  VIDLQDHAHRK--NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++D++          MV INP++  + +   V +EGC+S+PD+  +V R+  I V+  D 
Sbjct: 61  IVDVRPKLGDDCHGLMVLINPELAAW-EGMVVGREGCMSVPDFTGNVIRAERIQVQAQDV 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
             + +    +G  A  +QHE+DHL+G+LF+D L   K D+  +K
Sbjct: 120 LGRERSYECEGFEARAVQHEMDHLDGLLFLDRLVSRKVDLFRRK 163


>gi|186684172|ref|YP_001867368.1| peptide deformylase [Nostoc punctiforme PCC 73102]
 gi|186466624|gb|ACC82425.1| peptide deformylase [Nostoc punctiforme PCC 73102]
          Length = 187

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/143 (42%), Positives = 92/143 (64%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I K++ ++  ++  ML+ MYS DGIGLAA Q+G+  +L+VIDL+    
Sbjct: 22  LGDRVLRQAAKRISKVDDELRQMVREMLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPENA 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P+V INP I   S D SV +EGCLSIP+   DVKR   + + Y D   + + + A+ 
Sbjct: 82  ANPPLVLINPTIKQVSRDISVAEEGCLSIPNVYLDVKRPEVVEIAYKDEYGRPRTLKAND 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LL  C+QHE+DHLNG++F+D + 
Sbjct: 142 LLGRCIQHEMDHLNGVVFVDRVE 164


>gi|288958776|ref|YP_003449117.1| peptide deformylase 2 [Azospirillum sp. B510]
 gi|288911084|dbj|BAI72573.1| peptide deformylase 2 [Azospirillum sp. B510]
          Length = 190

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M   P+    +PILR++++PI +  +  I  L  +M+  M    G+GLAA Q+    R++
Sbjct: 1   MPVLPIARMGNPILRQIAQPIADPTDPAIARLAADMIATMLDAPGVGLAAPQVSESCRII 60

Query: 60  VIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           V  +         +   V +NP I   +DD ++  EGCLSIP  R  V R   I  R   
Sbjct: 61  VFRVPADRGEGEEVANTVLVNPVIEPLTDDMALGWEGCLSIPGLRGLVPRHTRIRYRGHG 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            +       A G  A  +QHE+DHL+G+L++D +  L+
Sbjct: 121 LDGARIEREASGFHARVVQHEVDHLDGVLYLDRMDDLR 158


>gi|91204615|emb|CAJ70843.1| strongly similar to peptide deformylase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 170

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 95/162 (58%), Gaps = 3/162 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P P+LR+ ++P+ +IN+D+    + M+E+M    GIGLAA Q+G   RL VID+  
Sbjct: 3   IVTYPAPVLRQKAKPLTEINADVYKKAEKMVELMRRVHGIGLAAPQVGWSVRLFVIDVVG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           +    N  VFINP I+  + + S  +EGCLS P     V R+  I V   + N Q   + 
Sbjct: 63  NNVDDN--VFINPSIMEEAGETS-NEEGCLSFPGIMGKVIRTHKIKVCAYNLNGQKIEVV 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + LLA   QHELDHLNG LFID +S   R   ++++ +L Q
Sbjct: 120 LEDLLARAWQHELDHLNGCLFIDRMSPASRLAASQQLKELEQ 161


>gi|167837046|ref|ZP_02463929.1| peptide deformylase [Burkholderia thailandensis MSMB43]
          Length = 176

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E  N  ++  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVETFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +             V +NP +     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGNSERYPEAPPVPETVLVNPGVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D         A+G  A  +QHE DHL G L+   ++   +
Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160


>gi|319649622|ref|ZP_08003778.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
 gi|317398784|gb|EFV79466.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
          Length = 161

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V +P  +L     P++  +  +  L+++M + M   DG+GLAA QIG+  ++ +
Sbjct: 1   MAVKKIVSYPAEVLEAECEPVKVFDKKLGKLLNDMYDTMIEFDGVGLAAPQIGLSRQIAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D          INP+I+  + +     EGCLS P    +V R  ++ ++  D   +
Sbjct: 61  VDIDDEFGTIE---IINPEILETNGE-QTGPEGCLSFPGLYGEVTRPEYVKIKAQDRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  + A+  LA  + HE+DHL+G+LF   ++R
Sbjct: 117 YFTLEAEDFLARAILHEIDHLHGVLFTSKVTR 148


>gi|194336843|ref|YP_002018637.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693370|sp|B4SBG6|DEF_PELPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194309320|gb|ACF44020.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 188

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ I+ D ILR  ++P++ ++S I  LI +M E M +  GIGLAA Q+G   RL+V+
Sbjct: 1   MILPINIYSDDILRLKAKPLKGVDSAIEELIASMFESMRNASGIGLAAPQVGRSIRLLVL 60

Query: 62  DLQDHA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D+   +    + PMV INP I++     +  +EGCLS+P  +  V R A IT++Y D + 
Sbjct: 61  DVSCVSKCEHEKPMVVINPHILSVRG-HNDMEEGCLSVPGVQGYVVRPAAITLKYRDEHF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             +     G++A  +QHE+DHL+G LF+D + +  R  I K+++ L 
Sbjct: 120 AERTGEFSGMVARVIQHEIDHLDGTLFVDRMEKRDRKKIQKELTALA 166


>gi|325284991|ref|YP_004260781.1| peptide deformylase [Cellulophaga lytica DSM 7489]
 gi|324320445|gb|ADY27910.1| Peptide deformylase [Cellulophaga lytica DSM 7489]
          Length = 196

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 12/159 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + DP+LR+ ++ I + +  +  L++NM E MY+  G+GLAA Q+G+  R+ ++
Sbjct: 1   MILPITAYGDPVLRKKAKDINQDHPKLKELLENMWETMYNASGVGLAAPQVGLPLRIFLV 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    +  ++               FIN KII  + +   + EGCLSIPD R DV R   
Sbjct: 61  DTTPFSDDEDLSAEEQKALNGFKKAFINAKIIEETGEEWAFNEGCLSIPDIREDVSRKEN 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           I + Y+D N +      +GLLA  +QHE DH+ GILF D
Sbjct: 121 IKITYLDENFKEHTEEYNGLLARVIQHEYDHIEGILFTD 159


>gi|42527153|ref|NP_972251.1| polypeptide deformylase [Treponema denticola ATCC 35405]
 gi|41817577|gb|AAS12162.1| polypeptide deformylase [Treponema denticola ATCC 35405]
 gi|325474196|gb|EGC77384.1| polypeptide deformylase [Treponema denticola F0402]
          Length = 169

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 5/158 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++   +  LR VS+P+EKI+ +I +LID M   +   +GIGLAA Q+G   RL ++ + +
Sbjct: 3   VLYLGEETLREVSKPVEKIDENIKSLIDEMFVTVKKENGIGLAAPQVGENIRLFIVFINE 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                   VFINP+II  S +  + +EGCLSIP    +V R + + V++++ + + + I 
Sbjct: 63  Q-----KYVFINPEIIETSQEMCLMEEGCLSIPKVYDEVMRPSAVKVQFLNIDGKIKTIE 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           A GLLA  +QHE DHLNGILFID LS  K+    +K  
Sbjct: 118 ASGLLARVIQHENDHLNGILFIDRLSEEKKAEAIEKFE 155


>gi|312622713|ref|YP_004024326.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203180|gb|ADQ46507.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 166

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ S+ +EK +  +  L+D+M + MY  +GIGLAA Q+GVL R VV
Sbjct: 1   MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + A     +  +NP+I     + +V  EGCLS+P+   +V+R   + V+  D    
Sbjct: 61  IDIGEGA-----IELVNPEIEQVEGN-AVDVEGCLSVPNVWGEVERPQKVIVKAQDRFGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+GLLA  + HE+DHL+GILF+D + R 
Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147


>gi|212639617|ref|YP_002316137.1| peptide deformylase [Anoxybacillus flavithermus WK1]
 gi|212561097|gb|ACJ34152.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1]
          Length = 151

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 4/145 (2%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
            +P PIL  V +P+   +  ++ L+++M + M + DG+GLAA QIGV  ++ ++D+ D  
Sbjct: 2   TYPAPILETVCQPVTVFDRKLIKLLNDMYDTMLAADGVGLAAPQIGVDQQIAIVDIGDRH 61

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
            R      INP I+  + +  +  EGCLS P    +VKR  ++ VR  +   +   I A 
Sbjct: 62  GRIE---LINPIIVAQNGE-QIGPEGCLSFPGLFGEVKRFQYVKVRAQNRRGRPFEIEAT 117

Query: 128 GLLATCLQHELDHLNGILFIDHLSR 152
           G LA  LQHE+DHL+GILF   + R
Sbjct: 118 GFLARALQHEIDHLHGILFTSKVIR 142


>gi|254438825|ref|ZP_05052319.1| peptide deformylase [Octadecabacter antarcticus 307]
 gi|198254271|gb|EDY78585.1| peptide deformylase [Octadecabacter antarcticus 307]
          Length = 164

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 85/159 (53%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV + + ++P  +L +   P    + D+  LI+++ + MY   G  LAA QIGV  R+ V
Sbjct: 1   MVTRDIRLWPHAVLTQTCAPASLNDPDLDGLIEDLFDTMYHAKGRVLAAPQIGVTKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      ++P  FINP+I   + D     E CLSIPD    V R   + +R+ + +  
Sbjct: 61  VDVTWKDGIRDPRAFINPQITETAGDTVFMDEQCLSIPDTPMPVARPEAVQLRWANRDGG 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            +    DG+LA C+QHELDHLNG +  DH S   R  + 
Sbjct: 121 LETAPFDGILARCIQHELDHLNGTVIFDHQSPEVRAELE 159


>gi|302553425|ref|ZP_07305767.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302471043|gb|EFL34136.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 208

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + +    + +L +  R + +   D+  LID+M   MY  DG GLAA Q+GV  RL V D
Sbjct: 26  VRRITEAGEEVLHKPCRDVTEFGPDLAALIDDMFLTMYIADGAGLAANQVGVDLRLFVYD 85

Query: 63  LQDHAHRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             D    ++    +NP +              EGCLS+P    +V R     VR  D + 
Sbjct: 86  CPDDDGVRHVGHVVNPVLEPLDASHRRLLDDSEGCLSVPGAVMNVPRPDRAVVRGYDRDG 145

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  +I   G  A CL HE DH+NG +++D LS   R    ++M+
Sbjct: 146 EPLVIEGTGYFARCLAHETDHVNGQVYLDRLSGRDRKEALRQMA 189


>gi|1072950|pir||A55228 fms protein homolog - Thermus aquaticus (fragment)
          Length = 191

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 92/170 (54%), Gaps = 14/170 (8%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-- 60
             P+ ++ DP+LRR +RP+E   S I  L ++MLE M+   G+GLAA QIG+  RL V  
Sbjct: 1   VYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAV 59

Query: 61  -IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFI 110
               +     + P+        V  NP I T+ +      EGCLS+P  Y  +V R+  I
Sbjct: 60  EYADEPEGEEERPLRELVRRVYVVANPVI-TYREGLVEGTEGCLSLPGLYSEEVPRAERI 118

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            V Y D   + +++  +G +A   QHE+DHL+GILF + L + KR+   +
Sbjct: 119 RVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLE 168


>gi|253702639|ref|YP_003023828.1| peptide deformylase [Geobacter sp. M21]
 gi|251777489|gb|ACT20070.1| peptide deformylase [Geobacter sp. M21]
          Length = 168

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 107/169 (63%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + +V +P+ IL+   + +E+I+  +  L+D++++ M +  G +G+A+ QIGV  R+ 
Sbjct: 1   MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMQAGPGSVGVASPQIGVSLRVC 60

Query: 60  VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           VID+  + H K+     ++ INP+I+  S   +V +EGC+S+PDY  DV+RS  +T+R+ 
Sbjct: 61  VIDVSKNRHGKDNNHGLLLMINPEILARSGA-AVMREGCMSVPDYTGDVERSTELTLRFT 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +   + I A G  A  +QHELDHL+G+LF+D ++ LK  +  +K  K
Sbjct: 120 EPDGTVREIDASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 168


>gi|145594886|ref|YP_001159183.1| peptide deformylase [Salinispora tropica CNB-440]
 gi|145304223|gb|ABP54805.1| peptide deformylase [Salinispora tropica CNB-440]
          Length = 167

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  +P+ I  DP+LR  + P+   ++D+  L+ ++++ +    G  G+AA QIGV  ++ 
Sbjct: 1   MTMRPIRIIGDPVLRTPAAPVTSFDADLRALVADLMDTLLGAPGRAGVAAPQIGVSAQVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D   H         INP +    DD     EGCLSIP       R+   T R MD + 
Sbjct: 61  VYDADGHRG-----HLINPTL-ELGDDRQDDDEGCLSIPGLYFPTPRAMRATARGMDQHG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q   I   G LA  LQHE DHL G L++D L    R    +++  
Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTLRGETRRRALREVRA 159


>gi|41410016|ref|NP_962852.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|254777164|ref|ZP_05218680.1| peptide deformylase [Mycobacterium avium subsp. avium ATCC 25291]
 gi|81700308|sp|Q73T03|DEF_MYCPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|41398849|gb|AAS06468.1| Def [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 197

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++P+   +      D+  LI +M + M +  G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTQPVPVGDDGSLPADLGKLIADMYDTMDAAHGVGLAANQIGVG 60

Query: 56  YRLVVIDLQDHAH--RKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D      +   V +NP     +I     D     EGCLS+P       R++
Sbjct: 61  LRVFVYDCADDRGLTERRRGVVVNPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAS 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     I   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGNPVSIEGHGLFARMLQHETGHLDGFLYLDRL 162


>gi|256370663|ref|YP_003108488.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009455|gb|ACU52815.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM]
          Length = 180

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +  P++I+  P+LR+    IEK ++   I +LI NM + M    GIGLAA QIG+  RL 
Sbjct: 1   MILPILIYGHPLLRKRCLEIEKFSNSNQINSLIQNMYDTMGQAQGIGLAAPQIGISLRLF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +I+  +   +K   VFINPKI+     + + +EGCLS+P+   ++ R   + + Y D N 
Sbjct: 61  IIEYNNFYKKKFKQVFINPKILKIYGSYLITKEGCLSLPNIIENIIRKNHLIIEYYDENW 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +    +  GLL+  +QHE DH+ G  F+DH+S  K+  +  ++ K+
Sbjct: 121 KKYKQHFHGLLSIIIQHEYDHIEGKFFLDHISDQKKLFLHNQLKKI 166


>gi|33239533|ref|NP_874475.1| peptide deformylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|39930846|sp|Q7VED2|DEF_PROMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33237058|gb|AAP99127.1| N-formylmethionyl-tRNA deformylase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 203

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/161 (40%), Positives = 96/161 (59%), Gaps = 2/161 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    +  LR+ ++ I K++ +I +L+  ML  MY+  GIGLAA QIG   +L+VIDL 
Sbjct: 32  EIHTLGNSALRQSAKRISKVDKNIRDLVKKMLHSMYAAKGIGLAAPQIGSQQQLLVIDLD 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INP+I  FS     Y+EGCLSIP    DV R + I V + D   + + I
Sbjct: 92  IENSATPPIILINPEITEFSATIDTYEEGCLSIPGVYLDVIRPSSIKVNFRDEMGRPKKI 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            ADGLLA C+QHE+DHLNG+LF+D    +  + + K++ + 
Sbjct: 152 NADGLLARCIQHEMDHLNGVLFVDRA--INEEALNKELKEH 190


>gi|300854442|ref|YP_003779426.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM
           13528]
 gi|300434557|gb|ADK14324.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM
           13528]
          Length = 152

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 96/152 (63%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D ILR+ SR +E+IN  I  L+D+M E +Y  DG+GLAA Q+GVL R++V
Sbjct: 1   MALRTVRKYGDSILRKKSRKVEEINERIHVLLDDMEETLYEEDGVGLAAPQVGVLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      +NP+I T+S+  +V  EGCLSIP    +V+R   + V+ ++   +
Sbjct: 61  IDVGEGILK-----LVNPEI-TYSEGKAVDIEGCLSIPGSEGEVERPKKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +I  + LLA  L HE+DHLNGILFID + +
Sbjct: 115 EIVIEGEDLLARALCHEIDHLNGILFIDKIIK 146


>gi|218295865|ref|ZP_03496645.1| peptide deformylase [Thermus aquaticus Y51MC23]
 gi|218243603|gb|EED10131.1| peptide deformylase [Thermus aquaticus Y51MC23]
          Length = 190

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 13/174 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++ DP+LR+ +RP++   S +  L ++MLE M+   G+GLAA QIG+  RL V 
Sbjct: 1   MIYPIRLYGDPVLRKKARPVQDF-SGLKKLAEDMLETMWEARGVGLAAPQIGLSQRLFVA 59

Query: 62  ----DLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFI 110
               D  D   R      +   V +NP I T  +      EGCLS+P  Y  +V R+  I
Sbjct: 60  VEYADEPDEEERPLRDLVRQVYVVVNPVI-THREGLVEGLEGCLSLPGLYSEEVPRAERI 118

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            V + D   + + +  +G +A   QHE+DHL G+LF + L + KR+   +K   
Sbjct: 119 RVEFQDEEGRRRTLELEGYMARVFQHEIDHLEGVLFFERLPKPKREAFLEKHRA 172


>gi|289422300|ref|ZP_06424150.1| peptide deformylase [Peptostreptococcus anaerobius 653-L]
 gi|289157245|gb|EFD05860.1| peptide deformylase [Peptostreptococcus anaerobius 653-L]
          Length = 149

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DP+L + ++ +   N  +  L+D+M + MY+ DG+GLAA Q+G+L R VV
Sbjct: 1   MAIRNVVKMGDPVLNKKAKKVVDFNEKLHTLLDDMADTMYNEDGVGLAAPQVGILRRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+         +  INP+II    +     EGCLS+ DY A+V R  ++ V+  D N +
Sbjct: 61  VDIG-----TGLIELINPQIIAQEGE-QTDVEGCLSVVDYVAEVTRPNYVKVKAQDRNGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I  +GL+A    HELDHL GILF++ + +
Sbjct: 115 DFEIEGEGLMARAFCHELDHLEGILFVERVEK 146


>gi|209522380|ref|ZP_03270994.1| peptide deformylase [Burkholderia sp. H160]
 gi|209497186|gb|EDZ97427.1| peptide deformylase [Burkholderia sp. H160]
          Length = 177

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L R++ P++  +  ++  L+ +M E M++ +G GLAA QIGV  ++V+
Sbjct: 1   MIHDILKMGDPRLLRIAEPVDHFDTPELHRLVADMFETMHAANGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGSNERYPDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D         A+G  A  +QHE DHL G L+   ++   +   T+ +
Sbjct: 121 DQFGNPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSKFGFTEVL 167


>gi|30263870|ref|NP_846247.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47529297|ref|YP_020646.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186717|ref|YP_029969.1| peptide deformylase [Bacillus anthracis str. Sterne]
 gi|65321194|ref|ZP_00394153.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis
           str. A2012]
 gi|165872270|ref|ZP_02216907.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167636413|ref|ZP_02394712.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|167641126|ref|ZP_02399381.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|170688865|ref|ZP_02880068.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|170708808|ref|ZP_02899244.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|177654890|ref|ZP_02936607.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190565855|ref|ZP_03018774.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|227813225|ref|YP_002813234.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|229601957|ref|YP_002868104.1| peptide deformylase [Bacillus anthracis str. A0248]
 gi|254683424|ref|ZP_05147284.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066]
 gi|254735906|ref|ZP_05193612.1| peptide deformylase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739846|ref|ZP_05197539.1| peptide deformylase [Bacillus anthracis str. Kruger B]
 gi|254751036|ref|ZP_05203075.1| peptide deformylase [Bacillus anthracis str. Vollum]
 gi|254756701|ref|ZP_05208730.1| peptide deformylase [Bacillus anthracis str. Australia 94]
 gi|39931068|sp|Q81WH1|DEF1_BACAN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|30258514|gb|AAP27733.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47504445|gb|AAT33121.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180644|gb|AAT56020.1| polypeptide deformylase [Bacillus anthracis str. Sterne]
 gi|164711946|gb|EDR17486.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167510906|gb|EDR86297.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|167528155|gb|EDR90942.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|170126293|gb|EDS95184.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|170667220|gb|EDT17980.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|172080401|gb|EDT65488.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190562774|gb|EDV16740.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|227002722|gb|ACP12465.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|229266365|gb|ACQ48002.1| peptide deformylase [Bacillus anthracis str. A0248]
          Length = 156

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+GLLA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGLLARAIQHEIDHLHGVLFTSKVTR 148


>gi|83816785|ref|YP_445415.1| peptide deformylase [Salinibacter ruber DSM 13855]
 gi|294507298|ref|YP_003571356.1| peptide deformylase [Salinibacter ruber M8]
 gi|123739741|sp|Q2S316|DEF_SALRD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|83758179|gb|ABC46292.1| peptide deformylase [Salinibacter ruber DSM 13855]
 gi|294343626|emb|CBH24404.1| Peptide deformylase [Salinibacter ruber M8]
          Length = 195

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/161 (40%), Positives = 94/161 (58%), Gaps = 9/161 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++    LR  + P+++    +  LIDNM+E M++  GIGLAA Q+G   RL V+
Sbjct: 1   MILPIYVYGHEALRNETDPVQENTEALQELIDNMIETMHNAAGIGLAAPQVGRTERLFVV 60

Query: 62  DLQDHAHR---------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           DL   A             PMVFINP+I+  S+D +  +EGCLSIP+ R  V R   I +
Sbjct: 61  DLTPMADEIAEAGEPLPPQPMVFINPEIVEESEDTAEMEEGCLSIPEVREAVARPERIRM 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           RY D   + Q + A G+L+  LQHE DHL+G+LF D+LS  
Sbjct: 121 RYRDREFEEQELEAGGMLSRVLQHERDHLDGVLFTDYLSSF 161


>gi|154175184|ref|YP_001407439.1| peptide deformylase [Campylobacter curvus 525.92]
 gi|112803277|gb|EAU00621.1| peptide deformylase [Campylobacter curvus 525.92]
          Length = 174

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 4/160 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L  VS+ +E  + ++  L+D+M E M + DGIGLAA+Q+GV  R+ ++
Sbjct: 1   MVLEILSYPNKKLYEVSKEVETFDEELHKLLDDMYETMIAKDGIGLAAIQVGVAKRIFIV 60

Query: 62  DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L +      + + +  INP+         VYQEGCLS+P +  DVKR+  + +++ D  
Sbjct: 61  NLSNEEGVQDKADLIEIINPEF-ELKVGECVYQEGCLSVPGFYEDVKRAERVKIKFQDRF 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Q + I  DGLLA  LQHE DHL+G LFI+ +   KR   
Sbjct: 120 GQERQIETDGLLAVALQHENDHLDGHLFIEKIGYNKRKKF 159


>gi|159902617|ref|YP_001549961.1| peptide deformylase [Prochlorococcus marinus str. MIT 9211]
 gi|159887793|gb|ABX08007.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 201

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 2/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    +  LR+ ++ + K+++ I  LI  ML  MYS  GIGLAA Q+G+  +L+VIDL  
Sbjct: 33  IHTLGNLELRQTAQRVSKVDNSIRTLIKKMLHSMYSAKGIGLAAPQVGIHKQLLVIDLDI 92

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+V INP+I  FS     Y+EGCLSIP    +V R + I + + D   + + + 
Sbjct: 93  ENSTTPPIVLINPQITDFSAAIETYEEGCLSIPGVYLNVIRPSSIKLNFRDEMGRPKKMN 152

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ADGLL+ C+QHE+DHLNG+LF+D ++    + ++K++ + 
Sbjct: 153 ADGLLSRCIQHEMDHLNGVLFVDRVTNE--NDLSKELQEH 190


>gi|47569494|ref|ZP_00240174.1| polypeptide deformylase [Bacillus cereus G9241]
 gi|47553823|gb|EAL12194.1| polypeptide deformylase [Bacillus cereus G9241]
          Length = 156

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETSCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|313901452|ref|ZP_07834909.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM
           13965]
 gi|313468280|gb|EFR63737.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM
           13965]
          Length = 540

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 6/150 (4%)

Query: 5   PLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+V    +P+LR  ++P+ ++  +I  L+D M   MY+ DGIGLAA Q+GV  R++V+D+
Sbjct: 25  PIVKGADEPVLRTPAQPVARVTREIRQLLDRMAATMYAADGIGLAAPQVGVSKRVIVVDV 84

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D       +  INP+I+   ++     EGCLS+P   A+V+R   + V  +D   +   
Sbjct: 85  GD-----GLIELINPEIVRRGEEVEAAYEGCLSLPRLLAEVERPTSVQVTGLDRRGRRIW 139

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153
           I  +G+LA CLQHE+DHL+G+L  D   ++
Sbjct: 140 IEGEGVLARCLQHEIDHLDGVLITDRARKV 169


>gi|331269686|ref|YP_004396178.1| peptide deformylase [Clostridium botulinum BKT015925]
 gi|329126236|gb|AEB76181.1| peptide deformylase [Clostridium botulinum BKT015925]
          Length = 156

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 6/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  + +++IN  I+ LI++M E MY  DG+GLAA QIGVL RLVV
Sbjct: 6   MALRNIRVNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVV 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II+ S+      EGCLS+P  +  V R   +  + ++   +
Sbjct: 66  IDVGE-----GPISLINPEIIS-SEGSQTDYEGCLSLPGKQGKVTRPYKVVAKALNEKGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              I+ + LLA  + HELDHL+G+LF+D + + K +
Sbjct: 120 EVEIHGEALLARAICHELDHLDGVLFMDKVVKGKEE 155


>gi|284990128|ref|YP_003408682.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
 gi|284063373|gb|ADB74311.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
          Length = 161

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+    DP+LR  +  +   + ++  L+ ++ + +      G+AA QIGV  R   
Sbjct: 1   MTIRPIRELGDPVLRTPADEVRSFDKELAALVRDLEDTVADPGRAGVAAPQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP+I+  S++     EGCLSIP   A   R+    V   D + +
Sbjct: 61  YNVDGRIG-----HVVNPRIVELSEETQDGDEGCLSIPGLWAPTVRAMHAVVEGFDVHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +   GL+A  LQHE+DHL+G +F+D L+   R    + + 
Sbjct: 116 PVRLEGTGLMARALQHEVDHLDGKVFLDRLTGDARKAALRALR 158


>gi|167772294|ref|ZP_02444347.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM
           17241]
 gi|167665397|gb|EDS09527.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM
           17241]
          Length = 155

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  LR+ SRP+   N  +  L+D+M E M    G+G+AA Q+GVL R VV
Sbjct: 1   MALRNILKEGDERLRKKSRPVTDFNERLWTLLDDMYETMKD-GGVGIAAPQVGVLRRAVV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  H       +NP I+  S D     EGCLSIP     V R A + ++  D   +
Sbjct: 60  IDVGEGKHE-----LVNPVIVEQSGD-QCGGEGCLSIPGQYGLVHRPAQLRLKAQDRYGK 113

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+G  A  + HE+DHL+GILFID   R+
Sbjct: 114 PFELEAEGYFAVAVCHEVDHLDGILFIDKAERM 146


>gi|238059170|ref|ZP_04603879.1| peptide deformylase [Micromonospora sp. ATCC 39149]
 gi|237880981|gb|EEP69809.1| peptide deformylase [Micromonospora sp. ATCC 39149]
          Length = 175

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  +P+ I  DP+LR    P+   ++++  L+ ++++ +    G  G+AA QIGV  ++ 
Sbjct: 8   MTMRPIRIIGDPVLRTACEPVTTFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVSAQVF 67

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V +   H         INP +   SD+     EGCLSIP       R+   T    D + 
Sbjct: 68  VYNADGHRG-----HMINPTL-ELSDETQGDDEGCLSIPGLYFPTPRALHATAHGFDQHG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   I   G LA  LQHE DHL+G L++D L    R    +++  
Sbjct: 122 EPLTICGSGFLARALQHETDHLHGRLYVDTLRGDTRRQALREIRA 166


>gi|168334698|ref|ZP_02692834.1| peptide deformylase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 160

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+VSRP+ K +  + + +++M E M S  G+GLAA Q+G L R+ +
Sbjct: 1   MAIRSIRVDDDPILRKVSRPVVKFDPLLHSFLNDMEETMRSASGVGLAAPQVGTLKRVFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       + FINP II F D      EGCLS+P     V R   +T++  D    
Sbjct: 61  IDIGE-----GLVEFINPIII-FEDGEQTGDEGCLSVPGRYGVVTRPNTVTIKAQDRYGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
           H  I    L A  + HE DHL+G +F+D
Sbjct: 115 HFEITKSELFARAICHENDHLDGKIFVD 142


>gi|257784671|ref|YP_003179888.1| peptide deformylase [Atopobium parvulum DSM 20469]
 gi|257473178|gb|ACV51297.1| peptide deformylase [Atopobium parvulum DSM 20469]
          Length = 180

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 1/161 (0%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           V++PDP L +    I+ IN D+  + ++ML+VMY+TDG+GLA  QIG + R+VVID+   
Sbjct: 9   VLWPDPRLSQKCEEIDDINDDVRKMAEHMLKVMYATDGVGLAGPQIGYMKRMVVIDVDYP 68

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
             ++NP V INP+I     +  VY+EGCLS P     V R + + V   + +       A
Sbjct: 69  NGQENPFVLINPEIKVADGEPRVYEEGCLSFPGITVPVTRPSHVVVHAYNLDGDLMRYEA 128

Query: 127 DG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +G L A CLQHE+DH+NG+   DHL    R    ++  + +
Sbjct: 129 EGDLFAVCLQHEIDHINGVTMPDHLGPGARMETLREYKEAL 169


>gi|33519686|ref|NP_878518.1| peptide deformylase [Candidatus Blochmannia floridanus]
 gi|39930852|sp|Q7VQC0|DEF_BLOFL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33517349|emb|CAD83734.1| polypeptide deformylase [Candidatus Blochmannia floridanus]
          Length = 175

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 69/165 (41%), Positives = 100/165 (60%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++R +  I+ D   +I +M E MY   GIGLAA Q+ +  +++V
Sbjct: 1   MSILQMLYYPDQRLRKIARSVSIISHDTKKIISDMFETMYFQQGIGLAATQVDIHQKIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL ++  ++  +VFINP II      +   EGCLSIP  RA V RS  I V+ +D N  
Sbjct: 61  IDLNNNIQKR--LVFINPCIIKKIGTITHIIEGCLSIPKIRASVPRSQNIIVQSLDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +  + A  LL+ C+QHE+DHL G LFID+LS  K   I KK++K 
Sbjct: 119 NFEMEATDLLSVCIQHEIDHLLGKLFIDYLSPFKIQRIHKKINKW 163


>gi|21672742|ref|NP_660809.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008354|sp|Q8K975|DEF_BUCAP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21623388|gb|AAM68020.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 167

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 101/156 (64%), Gaps = 3/156 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EKI  +I  + +NM++ MY  +GIGLAA Q+ +  +++V
Sbjct: 1   MSVLKILHYPDQRLRLIAKPVEKITKEIYKITNNMIDTMYQEEGIGLAATQVNIQLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I       +   ++ INPKII      S+ +EGCLSIP+YRA V R  +I ++ ++ N  
Sbjct: 61  IHKIHAIEKN--LILINPKIIEKKGSISI-EEGCLSIPEYRAFVPRFNYIKIQAINLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              I AD +L+ C+QHE+DHLNG LFID+LS LKR+
Sbjct: 118 TVEIEADSILSICIQHEIDHLNGKLFIDYLSELKRE 153


>gi|187928362|ref|YP_001898849.1| peptide deformylase [Ralstonia pickettii 12J]
 gi|187725252|gb|ACD26417.1| peptide deformylase [Ralstonia pickettii 12J]
          Length = 177

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV++P+E+    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP I   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNDRYPDAPAVPKTVLINPTIEPLSDEMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D +       A+G  A  +QHE DHL G+L+   +    R   T+ +
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTRFGFTEVL 167


>gi|85700131|gb|ABC74515.1| polypeptide deformylase [Helicobacter pylori]
 gi|85700141|gb|ABC74520.1| polypeptide deformylase [Helicobacter pylori]
          Length = 174

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 58/170 (34%), Positives = 104/170 (61%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +   ILR +S+ +   ++ +   + +M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1   MALLEIIHYSSKILRTISKEVVSFDAKLHQQLVDMYETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61  IDLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           I+L       H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y + 
Sbjct: 61  INLPQEDGVQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            A+ +++ A  LLA  +QHE+DHLNG+LF+D LS LKR    K++ +L +
Sbjct: 120 FAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169


>gi|167747883|ref|ZP_02420010.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662]
 gi|167652705|gb|EDR96834.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662]
          Length = 157

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 5/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ S+ I+++ S  M LI++M + MY   G+GLAA Q+G+L RLVV
Sbjct: 1   MAIRNIRKMGDEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID     +   P+V INPKI+    +  +  EGCLS+P   A VKR   +    +D +  
Sbjct: 61  ID----TYEGQPLVLINPKIVEKDGE-QIGDEGCLSLPGKVAVVKRPNHVVCEALDRDMN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              +  +GLLA  + HELDHL+G+L+ D      RD+  ++
Sbjct: 116 PIRVEGEGLLARAICHELDHLDGVLYPDVAEEPVRDVEEEE 156


>gi|126728525|ref|ZP_01744341.1| peptide deformylase [Sagittula stellata E-37]
 gi|126711490|gb|EBA10540.1| peptide deformylase [Sagittula stellata E-37]
          Length = 165

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 1/165 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  LR  S P+    S +  L+++M E MY+  G GLAA Q+GV  RL V
Sbjct: 1   MSLLPILTWPDTGLRAASMPVRAP-SAVARLVEDMFETMYAAPGRGLAAPQVGVRSRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       K P V INP +          +E CLS+P     V R   I +RY D + +
Sbjct: 60  MDATWKDGEKTPTVCINPVVAPLDGPEEPGEEACLSMPGVSVMVTRPTRIRLRYTDLDDK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              +   G  A   QHE DHL+G++   HL   +R ++  +   L
Sbjct: 120 THEVVLTGAAARIAQHETDHLDGVMHFQHLPLAERGVLLAEYEAL 164


>gi|187924438|ref|YP_001896080.1| peptide deformylase [Burkholderia phytofirmans PsJN]
 gi|187715632|gb|ACD16856.1| peptide deformylase [Burkholderia phytofirmans PsJN]
          Length = 177

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L R++ P++  +  ++  L+ +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVI 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGHNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +     A+G  A  +QHE DHL G L+   ++   +   T+ +
Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAKFGFTEVL 167


>gi|163744871|ref|ZP_02152231.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45]
 gi|161381689|gb|EDQ06098.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45]
          Length = 165

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 83/155 (53%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +PDP L  +  PIE+I  +I  L  +MLE MY+  G GLA  Q+G + RL V
Sbjct: 1   MSMREVLRWPDPRLAEICAPIEEITPEIEQLAADMLETMYAAPGRGLAGPQVGAMLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     ++ +P+V INP      ++     EGCLSIP    D+ R + + + +   N  
Sbjct: 61  MDAGWKENKSDPLVCINPMFQEIGEERVTNTEGCLSIPGISTDISRPSQVQMVWTGLNGG 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +   +G  A   QHE+DHL+G++  DHL    R
Sbjct: 121 RYVQSFEGAAALIAQHEMDHLDGVVTFDHLDAETR 155


>gi|163733889|ref|ZP_02141331.1| peptide deformylase, putative [Roseobacter litoralis Och 149]
 gi|161393000|gb|EDQ17327.1| peptide deformylase, putative [Roseobacter litoralis Och 149]
          Length = 165

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 60/165 (36%), Positives = 98/165 (59%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  D++ + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MSVRAYLQWPDARLRTAAADVPEITPDVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R+  +   NP+II  S   + ++E   ++P   A V+R   +TVR+MD    
Sbjct: 61  VDASDSRDRR--IRLANPEIIEASAIMNDHEEASPNLPGVFAKVRRPRGVTVRFMDETGT 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +      GL AT +QH++DHL G ++ D+LS++KRDM+ +K  KL
Sbjct: 119 YVRRDFVGLEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163


>gi|120436619|ref|YP_862305.1| peptide deformylase [Gramella forsetii KT0803]
 gi|158512448|sp|A0M3P3|DEF_GRAFK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|117578769|emb|CAL67238.1| peptide deformylase [Gramella forsetii KT0803]
          Length = 196

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+L++ ++ I+K    +  LI+NM + MY+  G+GLAA Q+G+  R+ +I
Sbjct: 1   MILPIIAYGDPVLKKKAKDIDKDYPKLEELINNMWDTMYNAYGVGLAAPQVGLPVRMFMI 60

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A  +               VFINP+II  + +   + EGCLSIP+ R DV R   
Sbjct: 61  DPAPFADDEELDEAEKKVLMDLRKVFINPQIIEETGEEWAFSEGCLSIPEVREDVFRQPD 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D N +       GL A  +QHE DH+ GILF D LS LK+ +I  K++ + + +
Sbjct: 121 ITIEYHDENWEKHTETYSGLAARVIQHEYDHIEGILFTDKLSSLKKRLIKSKLANISKGK 180


>gi|229495940|ref|ZP_04389664.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406]
 gi|229317032|gb|EEN82941.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406]
          Length = 190

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 5/170 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ ++  P+LR V++ I     ++  LI  M + MY +DGIGLAA QIG   RL+VID  
Sbjct: 3   PIYLYGHPVLREVAQDITPEYPNLSGLIAEMWKSMYESDGIGLAAPQIGKSIRLLVIDAS 62

Query: 65  DHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             A      +    V IN +I   S++    +EGCLS+P     V+R   IT+ Y+D   
Sbjct: 63  PMAEYFPECKDFKTVMINARITELSEETLSEEEGCLSLPGIHERVERPKEITIEYLDEQF 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             Q  +  G  A  +QHE DHL G LF DH+S L++ ++  K++++   +
Sbjct: 123 TPQTRHLTGFAARVVQHEYDHLEGKLFTDHVSTLRKSLLKNKLARIASGK 172


>gi|254526876|ref|ZP_05138928.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
 gi|221538300|gb|EEE40753.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
          Length = 201

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 61/162 (37%), Positives = 95/162 (58%), Gaps = 3/162 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +       LR  ++ I K++ DI  L   ML+ MYS  GIGLAA Q+G+   L+VID+ 
Sbjct: 32  EIYKLGSKALRTTAKRISKVDIDIRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVIDIN 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INP+I  +    + Y+EGCLSIP    +V R + I +++ D   + + +
Sbjct: 92  FEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS---RLKRDMITKKMS 163
            ADGLLA C+QHE+DHL G+LF+D ++    LK+++I +   
Sbjct: 152 NADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELIKEGYK 193


>gi|254431098|ref|ZP_05044801.1| peptide deformylase [Cyanobium sp. PCC 7001]
 gi|197625551|gb|EDY38110.1| peptide deformylase [Cyanobium sp. PCC 7001]
          Length = 180

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 8/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P++   DP LR+V+  + +    + ++  L+D++ + M + DG GLAA QIGV  R
Sbjct: 1   MAIRPVLRLGDPFLRQVAVAVPRQAIGSPELSALLDDLRDTMAARDGAGLAAPQIGVALR 60

Query: 58  LVVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +V+           A      V INP +       S   EGCLS+P  R  V R   I  
Sbjct: 61  VVIFGFTTNPRYPEAPPIPDTVLINPVLTPLGSARSSGWEGCLSVPGLRGLVPRWDRIRY 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +D   +      +G  A  +QHE DHL+G+LF D +        + +++ 
Sbjct: 121 TGLDEQGRPLQREVEGFHARVVQHECDHLDGVLFPDRIEDRTAFGFSAELAA 172


>gi|296270495|ref|YP_003653127.1| peptide deformylase [Thermobispora bispora DSM 43833]
 gi|296093282|gb|ADG89234.1| peptide deformylase [Thermobispora bispora DSM 43833]
          Length = 162

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 11/161 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +    DP+LR  + P+ + + ++  LID M +VMY+ DG+GLA  QIGV  R+ V D+ 
Sbjct: 3   EIRHIGDPVLRTPAEPVTEFDRELRRLIDEMFQVMYAADGVGLAGPQIGVGKRVFVYDI- 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD------YRADVKRSAFITVRYMDCN 118
                      +NP++     +  V +EGCLS+P         A   R+A +T+R  D  
Sbjct: 62  ----VNRKGHVVNPELTIDDPEQIVAEEGCLSVPSKETGKPLYAPTPRAAGVTLRGFDRL 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            +   + A G+LA C QHE DHLNG L++D L + +R  I 
Sbjct: 118 GRPITVKARGMLARCFQHEFDHLNGTLYVDRLPKEERRRIL 158


>gi|310642740|ref|YP_003947498.1| peptide deformylase [Paenibacillus polymyxa SC2]
 gi|309247690|gb|ADO57257.1| Peptide deformylase [Paenibacillus polymyxa SC2]
          Length = 159

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/144 (38%), Positives = 89/144 (61%), Gaps = 4/144 (2%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           PD +L +V++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+V+D  D    
Sbjct: 4   PDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIVVDAGD---E 60

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
              +  INP+I+    +  +  EGCLSIP    DV+R+  +TV+ ++   +   + A GL
Sbjct: 61  HGLIKMINPEIVAEEGE-QLGPEGCLSIPGLNGDVRRAEKVTVKGLNREGKAITVTATGL 119

Query: 130 LATCLQHELDHLNGILFIDHLSRL 153
           L+   QHE+DHLNG+LF D   ++
Sbjct: 120 LSRAFQHEIDHLNGVLFTDIAEKV 143


>gi|269836415|ref|YP_003318643.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745]
 gi|269785678|gb|ACZ37821.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745]
          Length = 177

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 5/156 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LV   DP LR+ +  I K++ D+  L  +MLE MY+ DG+GLA  Q+GV+ R++V
Sbjct: 1   MAVLKLVYEGDPRLRQKAVRIRKVDDDLRRLAADMLETMYAADGVGLAGPQVGVMRRIIV 60

Query: 61  IDLQ-DHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           I +     +  +P   M  INP+I+  S    V  EGCLSIP++  +V R+  +TV+  D
Sbjct: 61  IGVPAGFENEDDPPIEMALINPEIVRASG-RQVGPEGCLSIPNWYGEVPRAMHVTVKARD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + +   I A G LA  LQHE+DHL+GILF D +  
Sbjct: 120 LDDREIRIKASGGLARILQHEIDHLDGILFTDRVED 155


>gi|227824654|ref|ZP_03989486.1| peptide deformylase [Acidaminococcus sp. D21]
 gi|226905153|gb|EEH91071.1| peptide deformylase [Acidaminococcus sp. D21]
          Length = 164

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 91/158 (57%), Gaps = 7/158 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V    PILR  +  + + +  +   +  M E MY+ +G GLAA QIG+  R++V
Sbjct: 9   MSLLPIVKVGAPILREKAEAVTRFDKKLEKTLKAMAESMYANNGCGLAAPQIGLSKRMIV 68

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D A  +    F+NP +  F  +  +  EGCLS+ DY  +VKR+A +TVR+ D    
Sbjct: 69  IDADDGAGIRE---FVNPVLSEFKGE-EIDTEGCLSVDDYEGEVKRAAEVTVRFQDRKGG 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH---LSRLKR 155
           H  + A GLLA  LQHE DHL+GILFID    LS  ++
Sbjct: 125 HWRLTASGLLARALQHECDHLDGILFIDRALSLSPKRK 162


>gi|86741351|ref|YP_481751.1| peptide deformylase [Frankia sp. CcI3]
 gi|86568213|gb|ABD12022.1| peptide deformylase [Frankia sp. CcI3]
          Length = 230

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 40/204 (19%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+    DP+LR  +  + + ++ +  L+ +M++ MY   G+GLAA QIGV  RL V
Sbjct: 1   MTVLPIRTVGDPVLRTPTTLVTEFDTALGRLVTDMIDTMYDAPGVGLAAPQIGVGLRLFV 60

Query: 61  IDLQDHAH---------------------RKNPMVFINPKIITFSDDF------------ 87
            D+                             P     P  I  S +             
Sbjct: 61  FDVDYDPRDESVPRVPRVVVNPVLELGPDPGRPGETQRPGGIQRSGETQRSGETQRSGET 120

Query: 88  -------SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
                      EGCLS+P       R+    VR +D   Q      +GLLA C QHE+DH
Sbjct: 121 QRSGETQQHGPEGCLSVPGLHFPTTRALAARVRGVDVTGQPVEYAGEGLLARCFQHEVDH 180

Query: 141 LNGILFIDHLSRLKRDMITKKMSK 164
           L+GIL++D L+   R    + + +
Sbjct: 181 LDGILYVDRLTGEARRAAVQALRE 204


>gi|302766631|ref|XP_002966736.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
 gi|300166156|gb|EFJ32763.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
          Length = 198

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/147 (38%), Positives = 84/147 (57%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PDP LR  +  I   + ++  L+D ML+VMY TDG+GL+A Q+GV  RL+V + + 
Sbjct: 13  IVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNPEG 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +    VF+NP I+ F  +    +EGCLS    +ADV+R   I V   D N +     
Sbjct: 73  ERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFGTT 132

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
             G  A   QHE DHL G+L+ID ++ 
Sbjct: 133 FRGWTARIFQHEYDHLEGVLYIDRMTP 159


>gi|71892002|ref|YP_277732.1| peptide deformylase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|123761479|sp|Q493I1|DEF_BLOPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71796108|gb|AAZ40859.1| polypeptide deformylase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 173

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 3/153 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR ++ P+  ++ D   +I++M + MY   GIGLAA Q+ +  +++V
Sbjct: 1   MSILEILYYPDKRLRTIADPVVAVSDDTNQIINDMFDTMYFKKGIGLAATQVNIHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL  +   K  +VFINP I   +       E CLSIP     V RS  IT++ +D    
Sbjct: 61  IDL--YKKNKQRLVFINPSITKKTG-IISIPESCLSIPQIYEIVPRSEKITIQSLDQYGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+ LLA C+QHE+DHL G LFIDHLS L
Sbjct: 118 KFEMEANNLLAICIQHEVDHLFGKLFIDHLSPL 150


>gi|302792493|ref|XP_002978012.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
 gi|300154033|gb|EFJ20669.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
          Length = 198

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/147 (38%), Positives = 84/147 (57%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++PDP LR  +  I   + ++  L+D ML+VMY TDG+GL+A Q+GV  RL+V + + 
Sbjct: 13  IVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNPEG 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +    VF+NP I+ F  +    +EGCLS    +ADV+R   I V   D N +     
Sbjct: 73  ERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFGTT 132

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
             G  A   QHE DHL G+L+ID ++ 
Sbjct: 133 FRGWTARIFQHEYDHLEGVLYIDRMTP 159


>gi|253681963|ref|ZP_04862760.1| peptide deformylase [Clostridium botulinum D str. 1873]
 gi|253561675|gb|EES91127.1| peptide deformylase [Clostridium botulinum D str. 1873]
          Length = 149

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 60/155 (38%), Positives = 94/155 (60%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D ILR+  + +++IN  I+ LI++M E MY  DG+GLAA QIGVL RLVV
Sbjct: 1   MALRNIRVNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D +     +  INP+II++        EGCLS+P  +  V R   +  + ++   +
Sbjct: 61  IDVGDGS-----ISLINPEIISYEGS-QTDYEGCLSLPGKQGKVTRPYKVIAKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              I  +GLLA  + HELDHL+G+LF+D + + ++
Sbjct: 115 EVEINGEGLLARAICHELDHLDGVLFMDKVIKEEK 149


>gi|326798672|ref|YP_004316491.1| peptide deformylase [Sphingobacterium sp. 21]
 gi|326549436|gb|ADZ77821.1| Peptide deformylase [Sphingobacterium sp. 21]
          Length = 189

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +    LR+    +     D+ + I N+ + + +  G+GLAA Q+    +L V+
Sbjct: 1   MILPILAYGATNLRKACLTVSPSYPDLNSFIKNLWQTLDNAQGVGLAAPQVNENIQLFVV 60

Query: 62  D---------LQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D          +D A +  P +   FINPKI+  SD+  + +EGCLSIP     VKR ++
Sbjct: 61  DSRISFSSVNTEDMAQKDYPGIRQAFINPKIVAHSDEMELDEEGCLSIPGISFPVKRFSW 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + Y+D N Q    Y  G  A  +QHE DH+ G L ID+LS L++ MI KK++K+   R
Sbjct: 121 IKMTYLDENFQLHTDYFYGRTARIIQHEYDHILGKLPIDYLSELQKLMINKKLNKIRNGR 180


>gi|323526493|ref|YP_004228646.1| peptide deformylase [Burkholderia sp. CCGE1001]
 gi|323383495|gb|ADX55586.1| peptide deformylase [Burkholderia sp. CCGE1001]
          Length = 177

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L R++ P++  +  ++  LI +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIRGILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +     A+G  A  +QHE DHL G L+   ++   +   T+ +
Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAKFGFTEVL 167


>gi|170748510|ref|YP_001754770.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
 gi|170655032|gb|ACB24087.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
          Length = 165

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV+FPDP L R + P++     +  L D++ + + +   IGL A  IGV  RLVV
Sbjct: 1   MPARPLVLFPDPRLTRPAEPVDAFGPSLQALADDVRDTLMAESAIGLTAPHIGVPARLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + +  +   +   +++NP +   S + + + EG +S+P  R  + R A I + Y D +  
Sbjct: 61  VRMSPNESAR---IYVNPVVSWASPETATHDEGSVSMPGVRERIARPARIRLSYRDLDGS 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +    +G  A  LQHE+D L+G+ +I  LSRLKR+ + K+  K
Sbjct: 118 AREAETEGFPAAVLQHEIDQLDGVFWIARLSRLKRERLLKRFEK 161


>gi|327200563|pdb|3M6R|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
 gi|327200564|pdb|3M6R|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
 gi|327200565|pdb|3M6R|C Chain C, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
 gi|327200566|pdb|3M6R|D Chain D, Crystal Structure Of Arabidopsis Thaliana Peptide
           Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
           Actinonin
          Length = 193

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 89/163 (54%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PDPILR  ++ I+  + ++ NL+D M +VMY TD IGL+A Q+G+  +L+V +  
Sbjct: 2   EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDMIGLSAPQVGLNVQLMVFNPA 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   I
Sbjct: 62  GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               L A   QHE DHL G+LF D ++    D I +++  L +
Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 164


>gi|166364192|ref|YP_001656465.1| peptide deformylase [Microcystis aeruginosa NIES-843]
 gi|159030946|emb|CAO88636.1| def [Microcystis aeruginosa PCC 7806]
 gi|166086565|dbj|BAG01273.1| polypeptide deformylase [Microcystis aeruginosa NIES-843]
          Length = 191

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 61/143 (42%), Positives = 90/143 (62%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             D +LR+ ++ I K++  I  L   ML+ MYS++GIGLAA Q+ V  +L+VID +    
Sbjct: 22  LGDRVLRQPAKRIAKVDDSIRQLAREMLQTMYSSNGIGLAAPQVAVNKQLIVIDCEHDKP 81

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
              P++ INP+II +S +    +EGCLSIPD   DV R   I V Y D   + + + A+G
Sbjct: 82  ENPPLILINPQIIGYSRELCKAEEGCLSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANG 141

Query: 129 LLATCLQHELDHLNGILFIDHLS 151
           LLA  +QHE+DHLNG++F+D + 
Sbjct: 142 LLARVIQHEMDHLNGVMFVDRVD 164


>gi|17546118|ref|NP_519520.1| peptide deformylase [Ralstonia solanacearum GMI1000]
 gi|23396561|sp|Q8XZJ6|DEF2_RALSO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|17428414|emb|CAD15101.1| putative peptide deformylase 2 (pdf 2) (polypeptide deformylase2)
           protein [Ralstonia solanacearum GMI1000]
          Length = 177

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   D  L RV++P+++    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRPILKMGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP I   SD      EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNDRYPDAPAVPKTVLINPTIEPLSDAMEDGWEGCLSVPGLRGVVPRYTRLRYTGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D +       A+G  A  +QHE DHL GIL+   +    R   T+
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVQDFTRFGFTE 165


>gi|317472516|ref|ZP_07931837.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
 gi|316900030|gb|EFV22023.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
          Length = 157

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 5/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ S+ I+++ S  M LI++M + MY   G+GLAA Q+G+L RLVV
Sbjct: 1   MAIRNIRKMGDEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID     +   P+V INPKI+    +  +  EGCLS+P   A VKR   +    +D +  
Sbjct: 61  ID----TYEGQPLVLINPKIVEKDGE-QIGDEGCLSLPGKVAVVKRPNHVVCEALDQDMN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              +  +GLLA  + HELDHL+G+L+ D      RD+  ++
Sbjct: 116 PIRVEGEGLLARAICHELDHLDGVLYPDVAEEPVRDVEEEE 156


>gi|163792491|ref|ZP_02186468.1| Formylmethionine deformylase [alpha proteobacterium BAL199]
 gi|159182196|gb|EDP66705.1| Formylmethionine deformylase [alpha proteobacterium BAL199]
          Length = 183

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 8/177 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K +V   DP+LR V+  + +     I  LID+M+  +    GIGLAA QIG+L R++
Sbjct: 1   MTSKSIVRVGDPVLRSVAALVPDPTAPAIRQLIDDMVASLEEAGGIGLAAPQIGILQRVL 60

Query: 60  VIDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +  + D      P          INP +    D  ++  EGCLSIP  R +V R   + V
Sbjct: 61  IFWVPDARATNEPDDGPCPLTALINPVLEPLDDRMALGWEGCLSIPGLRGEVPRHLRMRV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                  +       G  A  LQHE+DHL+GIL++D ++   R   T+++ +    R
Sbjct: 121 TATTPEGEPFEAIVAGTRARVLQHEVDHLDGILYLDRMTDFTRFGFTEEVHEAEAER 177


>gi|134299448|ref|YP_001112944.1| peptide deformylase [Desulfotomaculum reducens MI-1]
 gi|134052148|gb|ABO50119.1| peptide deformylase [Desulfotomaculum reducens MI-1]
          Length = 172

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M ++ +    DP LR+V +P+ +I  +I+ L+++M + + +T  G  LAA Q+G L R+V
Sbjct: 1   MPERMIGKLGDPALRKVCKPVCEITPNILQLLNDMADTLRATPNGAALAAPQVGFLRRVV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL         +  INP+II  S +  V  EGCLS+P     VKRS F+ V+ M+   
Sbjct: 61  VIDLG-----NEKIELINPEIIEKSGE-QVGSEGCLSLPGIWGRVKRSKFVKVKAMNREG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  ++   GLLA CLQHE+DHL+GIL+IDH+
Sbjct: 115 EEILVEGKGLLARCLQHEIDHLDGILYIDHV 145


>gi|309782141|ref|ZP_07676871.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
 gi|308919207|gb|EFP64874.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
          Length = 177

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV++P+E+    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP +   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNDRYPDAPAVPKTVLINPTVEPLSDEMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D +       A+G  A  +QHE DHL G+L+   +    R   T+ +
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTRFGFTEVL 167


>gi|116071395|ref|ZP_01468664.1| peptide deformylase [Synechococcus sp. BL107]
 gi|116066800|gb|EAU72557.1| peptide deformylase [Synechococcus sp. BL107]
          Length = 201

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 2/159 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +       LR+ ++ I K+N  +  L  +ML  MY+  GIGLAA Q+ V  +L+VIDL 
Sbjct: 32  EIHTLGADALRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDLD 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP+I   S     Y+EGCLSIP    DV R   I + Y D   + + +
Sbjct: 92  LENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            ADGL+A C+QHE+DHLNG+LF+D ++   +D + K++ 
Sbjct: 152 KADGLMARCIQHEMDHLNGVLFVDRVTD--QDGLQKELK 188


>gi|291456898|ref|ZP_06596288.1| peptide deformylase [Bifidobacterium breve DSM 20213]
 gi|291382175|gb|EFE89693.1| peptide deformylase [Bifidobacterium breve DSM 20213]
          Length = 161

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++LE +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +   S +     EGCLS+P      +R+ +  VR +D + +
Sbjct: 61  YNIDGKVGY-----VLNPILEEKSGE-QYGDEGCLSVPGLWYKTRRAEYARVRGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++   G++   LQHE DHL+G +++D L + +R    K M +  +
Sbjct: 115 EVVLEGTGIMGRMLQHECDHLDGHVYLDRLEKEERRAAMKYMREHQK 161


>gi|291542591|emb|CBL15701.1| peptide deformylase [Ruminococcus bromii L2-63]
          Length = 158

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   D +L +  RP+ K +  + +LID+M+E ++  +G+GLAA Q+G+L R+VV
Sbjct: 1   MALRQIVKEGDSVLTKKCRPVVKFDDRLADLIDDMIETLHKAEGVGLAAPQVGILRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  +NPKII +S       EGCLSIP       R  ++ V+  D +  
Sbjct: 61  IDVGE-----GPIELVNPKIIAYSGKQETL-EGCLSIPGKWGYTVRPDYVKVKAQDRHGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +I    LLA    HELDHL GILF    +R+
Sbjct: 115 EFVIDGKDLLAKAFCHELDHLEGILFTQVATRM 147


>gi|254485851|ref|ZP_05099056.1| peptide deformylase [Roseobacter sp. GAI101]
 gi|214042720|gb|EEB83358.1| peptide deformylase [Roseobacter sp. GAI101]
          Length = 165

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +P+  LR  +  + +I  DI  L D+M+  M +  G+GLAA QIGV+ ++ V
Sbjct: 1   MTVRKIVPWPNTCLRTAAAEVPEITDDIRALWDDMIATMDAMPGVGLAAPQIGVMLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     +++  +   NP I+  S   + + E   ++P   A VKR   +TVRY+D    
Sbjct: 61  VDASQARNKR--IRLANPVILDASAILNEHDEASPNLPGVSAKVKRPRGVTVRYLDETGV 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  GL AT +QH++DHL G ++ D+LS+ +RDM+ +K  K 
Sbjct: 119 VTRRDFVGLEATSVQHQIDHLAGKMYFDNLSKTRRDMLLRKARKF 163


>gi|195953865|ref|YP_002122155.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933477|gb|ACG58177.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
          Length = 171

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 98/167 (58%), Gaps = 3/167 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V FP+ IL+R + P++ I+++I  +I  M E MY  DGIGLAA Q+ +   ++VID  
Sbjct: 3   EIVTFPNEILKRKTNPVKSIDAEIKEIIKEMKETMYKNDGIGLAANQVNIPLSIMVIDTT 62

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             +    K   V INP ++    +   ++EGCLS P  + +V R+  IT++ ++   +  
Sbjct: 63  SREDDQEKFKDVLINPTVLAKEGEI-KFKEGCLSFPGLQVEVIRAKEITIKAINECEEEV 121

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I+   GL A   QHE DHLNGI F+D LS +K+ +  +K  K+++ +
Sbjct: 122 ILNLSGLPAIVFQHEFDHLNGITFLDRLSGIKKRLALEKYQKMLKEK 168


>gi|87301353|ref|ZP_01084194.1| peptide deformylase [Synechococcus sp. WH 5701]
 gi|87284321|gb|EAQ76274.1| peptide deformylase [Synechococcus sp. WH 5701]
          Length = 201

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 63/148 (42%), Positives = 87/148 (58%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+ ++ I K++  +  L  NML  MYS  GIGLAA Q+GV  +++VIDL  
Sbjct: 33  IHRLGDQVLRQSAKRISKVDESVRELARNMLRSMYSAHGIGLAAPQVGVHKQVLVIDLDP 92

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 PMV +NP+I   S   + Y+EGCLSIP     V R +   V Y D   + + I 
Sbjct: 93  ENPATPPMVLVNPEINATSAALNTYEEGCLSIPGVYLSVVRPSEAEVSYRDEQGRPRRIK 152

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153
           ADGLLA C+ HE+DHL G+LF+D +S  
Sbjct: 153 ADGLLARCILHEMDHLKGVLFVDLVSDE 180


>gi|320103814|ref|YP_004179405.1| peptide deformylase [Isosphaera pallida ATCC 43644]
 gi|319751096|gb|ADV62856.1| peptide deformylase [Isosphaera pallida ATCC 43644]
          Length = 200

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 2/161 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P P LR  S P+ + + ++   I  M  +MY  +GIGLAA Q+ + Y+  ++++  
Sbjct: 3   IVPYPHPALRYPSVPVTRFDDELRGQIQAMFALMYENEGIGLAANQVALPYQFFILNISG 62

Query: 66  HAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +  +     VFINP+I+      +  +EGCLS P     V R   I VR  D       +
Sbjct: 63  NPEQTELEQVFINPQILRK-QATAQDEEGCLSFPGLHGKVLRPRRIKVRAWDQYGVPFEL 121

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            AD LLA  +QHE DHL+G LFID  S L R   +KK+   
Sbjct: 122 EADELLARAIQHEWDHLHGRLFIDKFSTLGRINASKKLKAF 162


>gi|299067454|emb|CBJ38653.1| Peptide deformylase [Ralstonia solanacearum CMR15]
          Length = 177

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   D  L RV++P+ +    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRPILKMGDSRLLRVAKPVLRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP I   SD      EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNDRYPDAPAVPKTVLINPTIEPLSDTMEDGWEGCLSVPGLRGVVPRYTRVRYTGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D +       A+G  A  +QHE DHL GIL+   +    R   T+
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVQDFTRFGFTE 165


>gi|309389021|gb|ADO76901.1| peptide deformylase [Halanaerobium praevalens DSM 2228]
          Length = 150

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 95/153 (62%), Gaps = 5/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR  ++ I+++N     LIDNM E MY+ DG+GLAA QIG+L R+ V
Sbjct: 1   MALLKVREIGDPVLRTKAKEIDEVNKKTNELIDNMFETMYAEDGVGLAAPQIGMLKRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+++     N ++ INP+II   +  ++ +EGCLSIP    DV R+  I V+ ++   +
Sbjct: 61  VDIRE----GNKVILINPEIIEK-EGKAIMEEGCLSIPGETGDVIRAEKIKVKSLNRKGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                A+G  A  +QHE+DHL+GILF+D + ++
Sbjct: 116 EVTFLAEGFEARAIQHEIDHLDGILFVDKIIKI 148


>gi|310828897|ref|YP_003961254.1| peptide deformylase [Eubacterium limosum KIST612]
 gi|308740631|gb|ADO38291.1| peptide deformylase [Eubacterium limosum KIST612]
          Length = 146

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR+ +R I +IN  I+ L  +ML+ MY+ +G+GLAA Q+GVL +L+V
Sbjct: 1   MAIRKMRVNDDPILRKKTREITEINDRIIELQKDMLDTMYAEEGVGLAAPQVGVLKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+I        V +E CLS PD    V+R  F+TV Y D N  
Sbjct: 61  IDIGE-----GPVTLINPEITKQEGS-VVEEEACLSFPDRSGKVERPEFVTVEYTDLNGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +   GL+A  + HE+DHLNGI+F+D + +
Sbjct: 115 RYEMECQGLMARAVCHEVDHLNGIVFLDRVIK 146


>gi|115379822|ref|ZP_01466890.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|310817741|ref|YP_003950099.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|115363181|gb|EAU62348.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|309390813|gb|ADO68272.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 168

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +VI+P  +L   ++P+      +  L+  M E M    GIG+AA Q+GV  R+ +
Sbjct: 1   MA-RDIVIWPHKVLTSATQPVMDFGPALEKLLAEMAESMAEAKGIGIAANQVGVSLRVAL 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +  +D          +NP+++  S      +EGCLS+P+    V R   + VRY D   Q
Sbjct: 60  VGRED----GTFFEIVNPQLLERSG-KVTLEEGCLSVPEEWEKVPRFEKVKVRYQDKAGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+G LA   QHE+DHL+G +F+DHLS LKR +I ++M+KL + +
Sbjct: 115 WHETEAEGRLAHVFQHEIDHLDGHVFVDHLSNLKRTLIRERMNKLQKSQ 163


>gi|163941605|ref|YP_001646489.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|229013051|ref|ZP_04170216.1| Peptide deformylase [Bacillus mycoides DSM 2048]
 gi|229061470|ref|ZP_04198815.1| Peptide deformylase [Bacillus cereus AH603]
 gi|229134675|ref|ZP_04263484.1| Peptide deformylase [Bacillus cereus BDRD-ST196]
 gi|229168607|ref|ZP_04296330.1| Peptide deformylase [Bacillus cereus AH621]
 gi|163863802|gb|ABY44861.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|228615013|gb|EEK72115.1| Peptide deformylase [Bacillus cereus AH621]
 gi|228648721|gb|EEL04747.1| Peptide deformylase [Bacillus cereus BDRD-ST196]
 gi|228717893|gb|EEL69541.1| Peptide deformylase [Bacillus cereus AH603]
 gi|228748305|gb|EEL98165.1| Peptide deformylase [Bacillus mycoides DSM 2048]
          Length = 156

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIGDDTGKIE---LINPVILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ AD  LA  +QHE+DHL+G+LF   + R
Sbjct: 117 IFLLEADDFLARAIQHEIDHLHGVLFTSKVKR 148


>gi|303228554|ref|ZP_07315382.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516801|gb|EFL58715.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a]
          Length = 162

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    PIL+ V+ P+E +N  +  LI++M + MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLEVVKAGHPILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  DHA     +  INP+II   +   +  EGCLS+P Y  DV+R   +TV+ +D + +
Sbjct: 61  VD--DHAGSG-LIALINPEII-HGEGSQIGLEGCLSVPGYFGDVERFEKVTVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +I ADG LA   QHE+DHL G LFI+  + L+R
Sbjct: 117 KVMIKADGFLARIFQHEIDHLEGHLFIEKATNLRR 151


>gi|320451483|ref|YP_004203579.1| peptide deformylase [Thermus scotoductus SA-01]
 gi|320151652|gb|ADW23030.1| peptide deformylase [Thermus scotoductus SA-01]
          Length = 191

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 14/180 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           +  P+ ++ DP+LR+ +RP++     +  L ++MLE M+   G+GLAA QIG+  R  V 
Sbjct: 1   MIYPIRLYGDPVLRKKARPVQDF-QGLKKLAEDMLETMFEARGVGLAAPQIGLSQRFFVA 59

Query: 61  -IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRAD-VKRSAFI 110
                +    + P+        V  NP I     +     EGCLS+P   A+ V R+  I
Sbjct: 60  VEYADEPEGEERPLRDLARRIYVVANPVITHREGE-VEGLEGCLSLPGLYAEEVPRAERI 118

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS-KLVQLR 169
            V Y D   + + +  +G +A   QHE+DHL+GILF + L + KR+   ++   +L +++
Sbjct: 119 RVEYQDEEGRPRALELEGYMARVFQHEIDHLDGILFFERLPKAKREAFLEENRAELARMQ 178


>gi|187736350|ref|YP_001878462.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426402|gb|ACD05681.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
          Length = 182

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 16/180 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + +P+L+   RP+E  +  +  L +NMLE MY+ +GIGLAA Q+ +  +LVVI
Sbjct: 1   MLLEIAQYGNPVLKEKCRPVEHFDDSLKTLAENMLETMYAAEGIGLAAPQVSIPIQLVVI 60

Query: 62  DLQDHAHRKN---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           D+                       P++F NP +  +      + EGCLS+   RA V R
Sbjct: 61  DIPKEEESVTWLKVNGEDKELSDIMPLMFANPVLEPY-GPMHPFHEGCLSVMKIRASVVR 119

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             F+    +  + +   I  +GLLA CLQHE DHLNGILF++ +S  ++  +  K+ +L 
Sbjct: 120 PDFVKATVLLIDGREITIDCNGLLARCLQHECDHLNGILFVERVSSAQKITLRNKLKRLA 179


>gi|88802639|ref|ZP_01118166.1| peptide deformylase [Polaribacter irgensii 23-P]
 gi|88781497|gb|EAR12675.1| peptide deformylase [Polaribacter irgensii 23-P]
          Length = 196

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 72/180 (40%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+VS  I +   D+  LI NM E MY+  G+GLAA QIG   RL +I
Sbjct: 1   MILPIIAYGDPVLRKVSEDIPEDYPDLDKLIHNMRETMYNASGVGLAAPQIGKAIRLFLI 60

Query: 62  DLQDHAHRKNP------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D    A  +               VFIN +II    +  V+ EGCLSIPD R DV R   
Sbjct: 61  DASPFAEDEELSEKDRNVLKTFNKVFINAQIIAEEGEEWVFNEGCLSIPDVREDVSRQPV 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I ++Y D N +      +GL A   QHE DH+ GILF D LS LK+ +I KK+  + + +
Sbjct: 121 IKIKYQDENFKKHFETLEGLAARVFQHEYDHIEGILFTDKLSTLKKRIIKKKLENISKGK 180


>gi|300704236|ref|YP_003745839.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
 gi|299071900|emb|CBJ43229.1| Peptide deformylase [Ralstonia solanacearum CFBP2957]
          Length = 177

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   D  L RV++P+++    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP I   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D +       A+G  A  +QHE DHL GIL+   +    R   T+
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVRDFSRFGFTE 165


>gi|159042736|ref|YP_001531530.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
 gi|157910496|gb|ABV91929.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
          Length = 168

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG----IGLAAVQIGVLYR 57
           + +P + +PD  LR  + P+ +I  +I  + D+M++ M +  G     GLAA QIGV+  
Sbjct: 1   MIRPFLSWPDARLRTPAAPVAEITDEIRTVWDDMIDTMEAMPGMGPGAGLAAPQIGVMQA 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           L V+D  +   R   +   NP+++  S     ++E   ++P   A + R   +TVR++D 
Sbjct: 61  LAVVDASE--ERGRAIRMANPQVLHASAQLRSHEEASPNLPGVFAKIDRPRAVTVRFLDA 118

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           N   +     GL AT +QH++DHL G ++ D LS+ KRDM+ +K  KL +
Sbjct: 119 NGAVKEQDFVGLWATSVQHQIDHLAGRMYFDRLSKTKRDMLLRKARKLAR 168


>gi|108804305|ref|YP_644242.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
 gi|108765548|gb|ABG04430.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
          Length = 164

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  F DP+L+  + P++  +  +  L + M E M   +G+GLAA Q+G L R+ V
Sbjct: 1   MAL-EMRTFGDPVLKSRAAPVKTFDGALARLAEEMFETMREHEGVGLAANQVGRLKRIFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +++D       +V +NP I   S+     +EGCLSIP  R +V+R A + +   + +  
Sbjct: 60  AEVEDRR-----LVVVNPAIEEASERTERAEEGCLSIPGVRVEVERPAAVVLTGQNLDGS 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I A+GLLA  LQHE DHL+G+L +D + R  R    +++ +
Sbjct: 115 PLRIEAEGLLARVLQHETDHLDGVLILDRVDRETRRAALRELRE 158


>gi|88807213|ref|ZP_01122725.1| peptide deformylase [Synechococcus sp. WH 7805]
 gi|88788427|gb|EAR19582.1| peptide deformylase [Synechococcus sp. WH 7805]
          Length = 183

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 62/151 (41%), Positives = 91/151 (60%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +    D +LR  +R I K++  + +L  +ML  MY+  GIGLAA Q+GV  +L+VI
Sbjct: 11  APLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVHQQLLVI 70

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL        P+V INP+II+ S     Y+EGCLSIP    DV R + + V + D   + 
Sbjct: 71  DLDPETASSPPLVLINPEIISASASLDTYEEGCLSIPGVYLDVVRPSAVQVSFRDEMGRP 130

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + + ADGL+A C+QHE+DHL G+LF+D ++ 
Sbjct: 131 KTLKADGLMARCIQHEMDHLTGVLFVDRVTD 161


>gi|291458602|ref|ZP_06597992.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419135|gb|EFE92854.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 169

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPIL +  + I+ +      LI +ML+ MY  +G+GLAA Q+GVL R+ V
Sbjct: 1   MALRSIRELGDPILEKECKEIKNVTERTRELIRDMLDTMYEANGVGLAAPQVGVLRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D        V INP++    ++     EGCLS+P     V R   + V+  D + +
Sbjct: 61  IDIGDEKR----YVCINPEVSVLGEELQTGPEGCLSVPGKEGTVTRPMRVHVKAKDIDFK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                A+GLLA  + HE DHLNG+++   +    RD++
Sbjct: 117 DYEFDAEGLLARAVSHENDHLNGVMYTTRVEGELRDVV 154


>gi|167586850|ref|ZP_02379238.1| peptide deformylase [Burkholderia ubonensis Bu]
          Length = 176

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  +++P+E+ +   +  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEIAQPVERFDTPALNELVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INPK+     D     EGCLS+P  R  V R A I     
Sbjct: 61  FGFGNNNRYPEAPPVPETVLINPKVEFMPPDMEEGWEGCLSVPGMRGVVSRYAKIRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           D         A+G  A  +QHE DHL G L+   ++   R   T
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFT 164


>gi|17229499|ref|NP_486047.1| polypeptide deformylase [Nostoc sp. PCC 7120]
 gi|23396565|sp|Q8YVH1|DEF2_ANASP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|17131097|dbj|BAB73706.1| polypeptide deformylase [Nostoc sp. PCC 7120]
          Length = 179

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++   +P LR+ +  +E I ++ I  LID+++  +   +G+G+A+ Q+   YRL ++  
Sbjct: 7   PIIQLGNPTLRQKAAWVENIHDATIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIVAS 66

Query: 64  QD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +      HA    P   INPKI+  S +     EGCLS+P  R  V R   I V Y D  
Sbjct: 67  RPNPRYPHAPEMEPTAMINPKIVGHSTEIVEGWEGCLSVPGIRGLVPRHQAIEVEYTDRY 126

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              Q       +A   QHE DHL+G+LFID +      +  ++  +LV
Sbjct: 127 GNLQKQTLTDFVARIFQHEFDHLDGVLFIDRVESNLNTITEEEYQELV 174


>gi|320096237|ref|ZP_08027821.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976818|gb|EFW08577.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 163

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  P+ ++   +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPVTEVTDSVRTLVEDLLEGVDMEGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NP I+  S D++    EGCLSIP+     KR+ +      D + 
Sbjct: 61  YNIDGQIGY-----VLNPTIVELSEDEYQDGDEGCLSIPELWYPTKRAWYARCEGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  ++  + L+A C+QHE+DHLNG L+ID L R  R    + + 
Sbjct: 116 RPVVLEGEELMARCIQHEVDHLNGHLYIDRLERKVRKKALRDIR 159


>gi|154249636|ref|YP_001410461.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1]
 gi|154153572|gb|ABS60804.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1]
          Length = 170

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +   I  DP+LR+ ++P+    + +  +I+     MY  DG+GLAA Q+G+  R   
Sbjct: 1   MTVR---ILGDPVLRKKAQPVTDF-AQVRAIIEEFKLTMYEQDGVGLAAPQVGISLRFFG 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D           + +NP+II  S++  + +EGCLS+P   ADV R  +I VRY D +  
Sbjct: 57  MD-----DGSGFKMIVNPEIIEKSEEKELGEEGCLSVPGVFADVLRHKWIRVRYQDEHGT 111

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     +G  A   QHE DHL+G+LFIDHL    R  + +++ K+++ 
Sbjct: 112 YHEELLEGYPARIFQHEYDHLDGVLFIDHLDSKTRTALAQQLKKIMEE 159


>gi|169631265|ref|YP_001704914.1| peptide deformylase [Mycobacterium abscessus ATCC 19977]
 gi|238688918|sp|B1MIN9|DEF_MYCA9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169243232|emb|CAM64260.1| Peptide deformylase [Mycobacterium abscessus]
          Length = 197

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++P+       +  D+  LI NM E M + +G+GLAA QIGV 
Sbjct: 1   MAIVPIRIVGDPVLHTPTQPVPVGPDGSLPDDLPELIANMYETMDAANGVGLAANQIGVP 60

Query: 56  YRLVVIDLQDH--AHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D  +      ++  V INP     +I     D    +EGCLS+P       R+ 
Sbjct: 61  LRLFVYDCAETRGGGTRHRGVVINPVLETSEIPETMPDPDDDEEGCLSVPGESFPTGRAG 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D + +   +  + L A  LQHE  HL+G L+ID L
Sbjct: 121 WARVTGLDADGKEVTLEGNDLFARMLQHETGHLDGFLYIDKL 162


>gi|332975391|gb|EGK12285.1| peptide deformylase [Desmospora sp. 8437]
          Length = 173

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 95/151 (62%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M ++ +++F DPILR+ +RP+++I   I  L+D++ + +Y+  G   LAA Q+G+L+R++
Sbjct: 1   MAERNILLFGDPILRKRARPVDQITPKIEKLLDDLADTLYAKPGRAALAAPQVGMLWRVI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID       +  +  INP+I     +  V  E CLS P Y   VKR+ ++ V+ ++ + 
Sbjct: 61  VID-----GAEGLIELINPEIEESHGE-QVGPEACLSYPGYTGIVKRAKYVKVKTLNRHG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +   +  +  LA C+QHE+DHLNG+LFIDH+
Sbjct: 115 ETWFLEGENHLARCIQHEIDHLNGVLFIDHI 145


>gi|157412419|ref|YP_001483285.1| peptide deformylase [Prochlorococcus marinus str. MIT 9215]
 gi|157386994|gb|ABV49699.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 201

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 3/162 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +       LR  ++ I K++ D   L   ML+ MYS  GIGLAA Q+G+   L+VID+ 
Sbjct: 32  EIYKLGSKTLRTTAKRISKVDIDTRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVIDIN 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P++ INP+I  +    + Y+EGCLSIP    +V R + I +++ D   + + +
Sbjct: 92  FEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLS---RLKRDMITKKMS 163
            ADGLLA C+QHE+DHL G+LF+D ++    LK+++I +   
Sbjct: 152 NADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELIKEGYK 193


>gi|72162832|ref|YP_290489.1| peptide deformylase [Thermobifida fusca YX]
 gi|71916564|gb|AAZ56466.1| peptide deformylase [Thermobifida fusca YX]
          Length = 185

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+P+V+F DP+L   + PI   N     LI ++++ + +    G+AA QIGV  R   
Sbjct: 1   MTKRPIVLFGDPVLSTPAAPITTFNRHTEALIRDLMDTVDAPGRAGVAAPQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             +            INP+I+  S++      EGCLS+P       R+    V+ +D   
Sbjct: 61  YRVDGQIGY-----VINPEIVELSEEIQEDGNEGCLSVPGLWYPTPRARRAVVKGVDLRN 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  ++   G++A CLQHE DHL G L++D L    R    +++ +
Sbjct: 116 EPVVVAGTGVMARCLQHETDHLAGKLYLDRLPPETRRAAMREIRR 160


>gi|207743249|ref|YP_002259641.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein
           [Ralstonia solanacearum IPO1609]
 gi|206594646|emb|CAQ61573.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein
           [Ralstonia solanacearum IPO1609]
          Length = 177

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   D  L RV++P+++    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP I   SD+     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D +       A+G  A  +QHE DHL GIL+   +    R   T+
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVRDFTRFGFTE 165


>gi|153815688|ref|ZP_01968356.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756]
 gi|317501925|ref|ZP_07960109.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088261|ref|ZP_08337180.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846929|gb|EDK23847.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756]
 gi|316896605|gb|EFV18692.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408505|gb|EGG87971.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 166

 Score =  179 bits (456), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D IL +  + + K+      LI +MLE MY ++G+GLAA Q+GVL R+VV
Sbjct: 1   MAIRVIREIGDDILEKQCKAVPKMTLRTKILIGDMLETMYESNGVGLAAPQVGVLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+II  S +    +EGCLS+P     V R   + VR  D N  
Sbjct: 61  IDVGE-----GPIVLINPQIIESSGE-QTGEEGCLSVPGKFGIVTRPDRVKVRAFDENMN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              +  +GLLA    HELDHL+G L+++
Sbjct: 115 EFEMEGEGLLARAFCHELDHLDGKLYVE 142


>gi|23335172|ref|ZP_00120410.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum
           DJO10A]
 gi|23466058|ref|NP_696661.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189439265|ref|YP_001954346.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|213691939|ref|YP_002322525.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|227547307|ref|ZP_03977356.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621368|ref|ZP_04664399.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296454248|ref|YP_003661391.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
 gi|317482866|ref|ZP_07941874.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689310|ref|YP_004209044.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis
           157F]
 gi|322691322|ref|YP_004220892.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|39931156|sp|Q8G487|DEF2_BIFLO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|23326783|gb|AAN25297.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189427700|gb|ACD97848.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|213523400|gb|ACJ52147.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|227212266|gb|EEI80162.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239515829|gb|EEQ55696.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296183679|gb|ADH00561.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
 gi|316915711|gb|EFV37125.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456178|dbj|BAJ66800.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320458046|dbj|BAJ68667.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320460646|dbj|BAJ71266.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 162

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++LE +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +   S +     EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNIDGKVGY-----VLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++   GL+   LQHE DHL+G +++D L + +R    + M 
Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEERREALRYMR 157


>gi|114327146|ref|YP_744303.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
 gi|114315320|gb|ABI61380.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
          Length = 209

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+L R + P+ +    +I  L  +M+E M    G+GLAA Q+    R+ 
Sbjct: 29  MSILKIARMGHPVLLRRADPVPDPTAPEIQRLALDMIETMIDAPGVGLAAPQVYQSLRMF 88

Query: 60  V--IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           V  + +       +P V INP++    D+  +  EGCLSIP +R +V R+  +  R +  
Sbjct: 89  VFRVPVSRGGEEVSPTVLINPELEWVGDEIQMCWEGCLSIPGFRGEVPRAMRVRYRGIGL 148

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +       A G  A  +QHE DHL+GIL+   ++ L R    +++
Sbjct: 149 DGAVIEREASGFHANVIQHEYDHLDGILYPMRMNDLGRLGFEEEI 193


>gi|303242018|ref|ZP_07328510.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
 gi|302590436|gb|EFL60192.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
          Length = 160

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/159 (38%), Positives = 96/159 (60%), Gaps = 7/159 (4%)

Query: 1   MVKKPLVIF-PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + +  +  D +LR+ S+ +EKI+  I+NL+D+M E MY ++G+GLAA Q+G+L R+V
Sbjct: 1   MALRQIRNYIDDDVLRKKSKVVEKIDEKILNLLDDMAETMYQSNGVGLAAPQVGILKRVV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +       +  INP+II+   +     EGCLS+PD   +VKR+  + V+ +D   
Sbjct: 61  VIDVGE-----GLIKLINPQIISMEGEQQ-DIEGCLSVPDIIGEVKRANKVKVKAIDEKG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
               +   GLLA    HE+DHL+GILFID +    +  I
Sbjct: 115 NSIELDGTGLLARAFCHEIDHLDGILFIDKIVNGTKKYI 153


>gi|328947001|ref|YP_004364338.1| peptide deformylase [Treponema succinifaciens DSM 2489]
 gi|328447325|gb|AEB13041.1| Peptide deformylase [Treponema succinifaciens DSM 2489]
          Length = 192

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 11/166 (6%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +    + +LR+   P+E  ++N ++   ++ M E M S DG+GLAA Q+G+  R  V+  
Sbjct: 3   ICKLGEDVLRQKCVPVESNEVNDELRATLNEMFETMISADGVGLAAPQVGISKRFFVVIS 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D+  R    VFINP+II  S + S Y+EGCLS+P     + R   I+V  +D N +  +
Sbjct: 63  DDNVRR----VFINPEIIKTSAENSEYEEGCLSLPGVSEKIVRPVKISVSAIDENGKRFV 118

Query: 124 IYA-DGLLATCLQHELDHLNGILFIDHLSRLKR----DMITKKMSK 164
           +   DGLLA  +QHE DHLNGIL+ID      +    ++  KK  +
Sbjct: 119 LDDVDGLLARIIQHENDHLNGILYIDRGDEEFKNKTVELFKKKAER 164


>gi|229820291|ref|YP_002881817.1| peptide deformylase [Beutenbergia cavernae DSM 12333]
 gi|229566204|gb|ACQ80055.1| peptide deformylase [Beutenbergia cavernae DSM 12333]
          Length = 162

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR     I  I+  +  L+D+++E +      GLAA QIGV  R   
Sbjct: 1   MAFRDIRVVGDPVLRTPCEEITVIDDRVRTLVDDLVETVDHEGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ D          +NP+I+  S+D +    EGCLS+P       R+ +  V   D + 
Sbjct: 61  WNIDDEVGY-----VLNPRIVELSEDTYQDGDEGCLSVPGLWFPTNRAWYAKVVGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              ++    L+A CLQHE+DHL+G+L+ID L R  R    + + 
Sbjct: 116 AEVVVEGTELMARCLQHEVDHLDGMLYIDRLERSVRKKAMRAIR 159


>gi|300087750|ref|YP_003758272.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527483|gb|ADJ25951.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 174

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 96/170 (56%), Gaps = 11/170 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR  S+ I  ++  I  L+D+M+E M + +G GLAA Q+GV  R +V
Sbjct: 1   MPVRKIRIHPDPVLRIKSKKIPVVDRSIRELVDDMVETMQTNNGCGLAAPQVGVSLRCIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I + +      P   INP+I+    +  + +E CLSIP   A+V RS  + V+ +  + +
Sbjct: 61  IGMPEQD----PFTIINPEIVKRRGERVI-EEACLSIPGVGAEVTRSLEVIVKGIGRDGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I    LLA  L+HE+DHLNG+LFID +         +K+ K+ Q+ D
Sbjct: 116 PLRIKGHDLLAQALEHEIDHLNGLLFIDRVDS------QEKLYKITQISD 159


>gi|239626559|ref|ZP_04669590.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516705|gb|EEQ56571.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 162

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL +  +P++++    M LI++M E MY  +G GLAA Q+GVL ++V 
Sbjct: 1   MAVRQIRIMGDDILTKKCKPVKEMTRRTMELIEDMFETMYEANGCGLAAPQVGVLKQIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     N  V INP+II   D      EGCLS+P     V R  ++ V+ +D N +
Sbjct: 61  IDVDD----GNQYVLINPEIIAQ-DGSQTGYEGCLSLPGKSGIVTRPNYVKVKALDENME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA  + HE+ HL G ++++ + 
Sbjct: 116 PFELEGEGLLARAICHEVAHLEGQMYVELVE 146


>gi|315604523|ref|ZP_07879586.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313535|gb|EFU61589.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 163

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I   +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPSVKALVEDLLEGVDMEGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NP+I+  S D++    EGCLS+PD     KRS +      D + 
Sbjct: 61  WNIDGDIGY-----VLNPRIVALSEDEYQDGDEGCLSVPDLWYPTKRSWYARCEGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  ++  + L+A C+QHE DHL+G ++ID L R  R    + +  
Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRPTRKKALRDIRA 160


>gi|304316976|ref|YP_003852121.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778478|gb|ADL69037.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 159

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/161 (42%), Positives = 99/161 (61%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPIL + ++ +EKI+  I+ ++D+M E MYS DG+GLAA QIG+L RLVV
Sbjct: 1   MALRYIRKIGDPILYKKAKHVEKIDDHILMILDDMAETMYSADGVGLAANQIGILRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP+II   +   + QEGCLS+P+  A+VKR   I V+Y D N  
Sbjct: 61  VDVGD-----GLIELINPEII-LEEGEQIGQEGCLSVPNVTAEVKRPKKIKVKYQDRNGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            + I  +  LA  L HE+DHLNG+LF+D   R+  +   KK
Sbjct: 115 IREIEGEDFLARALSHEIDHLNGVLFVDKAIRIINEDDEKK 155


>gi|32491245|ref|NP_871499.1| hypothetical protein WGLp496 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30172741|sp|Q8D258|DEF_WIGBR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|25166452|dbj|BAC24642.1| def [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 152

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 3/154 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P+  LR+++  I  I+S+I +LI NMLE MY  +GIGLAA Q+ V  R++V
Sbjct: 1   MSVLSILNYPNKKLRKIASNISLIDSEIKSLIKNMLETMYFNEGIGLAATQVDVHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+  + ++  P++ INP  I        ++EGCLSIP   A V RS  + ++ ++C  +
Sbjct: 61  IDISKNKNK--PLILINPVFINKCGA-QTFEEGCLSIPKKTAFVNRSKKVKIKAINCLGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             ++ + GLLATC+QHE+DHL G LFID++  LK
Sbjct: 118 EFLLKSKGLLATCIQHEMDHLIGKLFIDYIKPLK 151


>gi|298246394|ref|ZP_06970200.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
 gi|297553875|gb|EFH87740.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
          Length = 169

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 90/152 (59%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   +PILR+ ++ + + ++ +  L+D+M E M++++G+GLAA QI +  R+ V
Sbjct: 1   MAMRQIITSENPILRQKAKKVHRFDASLQKLVDDMFETMHASNGVGLAAPQIALSIRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDCNA 119
                  +    +   NP+I+    +    QEGCLSIP Y   +++R+A I V+ +D   
Sbjct: 61  -----AEYEGRRVAIFNPEIVKAEGE-ERGQEGCLSIPGYLGNNIRRAAKIVVKGVDVKG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +   + A+G  A  LQHE+DHL+GILF+D L 
Sbjct: 115 KPVRVNAEGWFARILQHEIDHLDGILFLDRLD 146


>gi|206901011|ref|YP_002251154.1| peptide deformylase [Dictyoglomus thermophilum H-6-12]
 gi|238058219|sp|B5YF46|DEF_DICT6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|206740114|gb|ACI19172.1| peptide deformylase [Dictyoglomus thermophilum H-6-12]
          Length = 153

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 6/148 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +    DPIL+  ++ +EKI+  +  L  +M+E M   +G+GLAA Q+G   R++V+
Sbjct: 1   MIREIRKVGDPILKTKAKKVEKIDEKVKELARDMIETMKFCNGVGLAAPQVGESLRIIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D +D     NP+V INP+II  S +   Y EGCLS+P     VKR+  I  +  D + + 
Sbjct: 61  DYED-----NPIVLINPEIIEMSGEELDY-EGCLSVPGVEVPVKRAERIVFKAQDLDGRT 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDH 149
           +   A GLLA  +QHE+DHL+G+L +D 
Sbjct: 115 KKYRAKGLLARVVQHEVDHLDGMLILDR 142


>gi|271968555|ref|YP_003342751.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270511730|gb|ACZ90008.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 162

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 11/155 (7%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + + +  DP+LR  + P+   + D+  LID M + MY+  G+GLA  QIGV  R+ V D 
Sbjct: 2   RDIRVVGDPVLRTPAEPVVDFDRDLRRLIDEMFDAMYAAQGVGLAGPQIGVSKRVFVYDC 61

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD------YRADVKRSAFITVRYMDC 117
                       INP +    D   + +EGCLS+P         A   R+A +TVR +D 
Sbjct: 62  SSRKG-----HLINPVLTVDDDAEILDEEGCLSVPGRDTGTPIYARTPRAAGVTVRGLDR 116

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +   I A GLLA C QHE DHL G+L++D L++
Sbjct: 117 LGRPVQIRARGLLARCFQHETDHLEGMLYVDRLAK 151


>gi|289705546|ref|ZP_06501938.1| peptide deformylase [Micrococcus luteus SK58]
 gi|289557775|gb|EFD51074.1| peptide deformylase [Micrococcus luteus SK58]
          Length = 191

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+   PDP+LR  + P+    +D+  L+ +M+  M++  G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPVRTVPDPVLRTAASPV-PAGADVRALVTDMIATMHAVGGVGLAAPQVGVGLRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+   A        +NP + T         EGCLS+P  R    R+A   VR  D +  
Sbjct: 60  FDVAGVAG-----HVVNPVLETAGQALREPGEGCLSVPGLRYHPARAAEAVVRGTDVDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                  GLLA CLQHE DHL+GIL++D L 
Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRLD 145


>gi|269302867|gb|ACZ32967.1| peptide deformylase [Chlamydophila pneumoniae LPCoLN]
          Length = 186

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+ S PI +I  +I NL+ +M + M +  G+GLAA Q+G    L V+
Sbjct: 1   MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 60

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            +              P VFINP +   S+   + +EGCLSIP  R +V R   ITV  M
Sbjct: 61  CVDRETEDGELIFSESPRVFINPVLSDPSETLIIGKEGCLSIPGLRGEVFRPQKITVTAM 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-RDMITKKMSKLVQ 167
           D N +    + +G  A  + HE DHLNG+L+ID +   K        + K+ +
Sbjct: 121 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 173


>gi|299143971|ref|ZP_07037051.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518456|gb|EFI42195.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 158

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 5/148 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR++SR + K +  +  LI++M E M   +G+GLAA Q+GVL R++ 
Sbjct: 1   MAYRVIRTDDDPVLRKISREVVKFDDRLKTLIEDMYETMDKAEGVGLAAPQVGVLRRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       ++    INP+II  S    +  EGCLS+P+ +  VKR   I V+Y+D N +
Sbjct: 61  VD----DRTEHRFALINPEIIFESG-TQLGYEGCLSLPNKQGKVKRFNEIKVKYLDENGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + I A   LA  LQHE+DHLNGIL+ D
Sbjct: 116 KKEIEAKEYLARILQHEIDHLNGILYSD 143


>gi|253999126|ref|YP_003051189.1| peptide deformylase [Methylovorus sp. SIP3-4]
 gi|253985805|gb|ACT50662.1| peptide deformylase [Methylovorus sp. SIP3-4]
          Length = 177

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  +P++   DP+L + + P+   +  ++  LI +M + M   +G G+AA QIGV  R+V
Sbjct: 1   MPIRPVLRMGDPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +  +        A +    V +NP +   +DD     EGCLS+P  R  V R   +    
Sbjct: 61  IFGVGKNPRYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPRYVRLHYTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            D           G  A  +QHE DHL+GIL+   +  L
Sbjct: 121 FDQYGNPIDRLVSGFHARVVQHECDHLDGILYPMRIRDL 159


>gi|46446437|ref|YP_007802.1| peptide deformylase [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400078|emb|CAF23527.1| putative polypeptide deformylase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 176

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 5/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K PL  + D +LR+    I +IN  I  L+ +M+E M + DG GLAA Q+     L + 
Sbjct: 1   MKLPLAYYGDSVLRKKGSQIAEINDTIKQLVQDMIETMEANDGCGLAAPQVHQSLSLFIT 60

Query: 62  DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +      D        VFINPKI+++S +    QE CLSIP  R  V R   +T++  D
Sbjct: 61  CIPQYLENDQVIPGQVRVFINPKILSYSQEVWACQEACLSIPGMRETVSRPLKVTIQATD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            N         G  A  + HE DH+NG+L+ID L   ++  I K + ++ +
Sbjct: 121 LNGHTFTEEFAGFDAHVIMHENDHVNGVLYIDRLPSKRKKGIEKFLREIKK 171


>gi|119383397|ref|YP_914453.1| peptide deformylase [Paracoccus denitrificans PD1222]
 gi|119373164|gb|ABL68757.1| peptide deformylase [Paracoccus denitrificans PD1222]
          Length = 166

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 95/167 (56%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + + D  L   + P+  I   +  + D+M++ M +  G+GLAA QIG++ RL V
Sbjct: 1   MTVRPFLPYADRRLHLPAEPVPAITETVRMIWDDMIDTMEAMPGVGLAAPQIGIMQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R   +   NP+++  S     ++E   ++P   A ++R   +TVR+++ + +
Sbjct: 61  VDASEK--RGQAVRMANPEVLHASVQLRAHEEASPNLPGVSARIERPRAVTVRFLNADGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +     GL AT +QH++DHLNG L++D+LS L+R M+  K +K  +
Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGRLYVDYLSPLRRKMLVAKSAKFAR 165


>gi|121998191|ref|YP_001002978.1| peptide deformylase [Halorhodospira halophila SL1]
 gi|121589596|gb|ABM62176.1| peptide deformylase [Halorhodospira halophila SL1]
          Length = 162

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PDP LR+ S P+E+ +  +  L+D+M+E M++   IGLAA Q+ V  R+VV
Sbjct: 1   MATLEILEHPDPRLRQPSAPVERFDQALCELVDDMIETMHARSAIGLAAPQVDVRQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
              +     + P VFINP+I   S      +E CLS+P  +  V+R   ++VR  D   +
Sbjct: 61  CCTEPA---QAPRVFINPEITGSS-LPGYIEESCLSVPGQQGLVRRPTRVSVRAQDTAGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                 + L A CL HE+DHL+G LFID L   KR  I
Sbjct: 117 RFHCKLENLDAVCLHHEIDHLDGTLFIDRLPFWKRLKI 154


>gi|303232127|ref|ZP_07318830.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513233|gb|EFL55272.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6]
          Length = 162

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V    PIL+ V+ P+E +N  +  LI++M + MY T+G+GLAA Q+ V  R++V
Sbjct: 1   MAVLEVVKAGHPILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  DHA     +  INP+II   +   +  EGCLS+P Y  DV+R   +TV+ +D + +
Sbjct: 61  VD--DHAGSG-LIALINPEII-HGEGSQIGLEGCLSVPGYFGDVERFEKVTVKGIDPHNK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +I A+G LA   QHE+DHL G LFI+  + L+R
Sbjct: 117 KVMIKAEGFLARIFQHEIDHLEGHLFIEKATNLRR 151


>gi|147678126|ref|YP_001212341.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum
           SI]
 gi|189083075|sp|A5D1C0|DEF_PELTS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146274223|dbj|BAF59972.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum
           SI]
          Length = 155

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/155 (39%), Positives = 90/155 (58%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   D IL+  ++ + KIN +I+ L+DNM E MY   G+GLAA QIGV  R++V
Sbjct: 1   MAVYKIVELGDRILKERAKEVPKINQNIIKLLDNMAETMYHARGVGLAAPQIGVSKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +       +  INP I + +       EGCLSIP    DV R++ I V+ +D   +
Sbjct: 61  VDVGE-----GLLEMINPVITSCAG-HETDSEGCLSIPGIVGDVTRASVIEVKGLDRRGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + A G LA  LQHE+DHL+GILFI+    +++
Sbjct: 115 PLEVKAKGYLARALQHEIDHLDGILFIEKAKNIRK 149


>gi|329943974|ref|ZP_08292243.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328531407|gb|EGF58249.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 163

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+LR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NPKI+  S D++    EGCLS+P      +R+ +      D N 
Sbjct: 61  WNIDGEIGY-----ILNPKIVELSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGTDLNG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  ++  + L+A C+QHE DHL G L++D L R  R    K++  
Sbjct: 116 KEVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAAAMKELRA 160


>gi|307128595|ref|YP_003880625.1| peptide deformylase [Candidatus Sulcia muelleri CARI]
 gi|306483057|gb|ADM89927.1| peptide deformylase [Candidatus Sulcia muelleri CARI]
          Length = 172

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/162 (39%), Positives = 98/162 (60%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++I+ +PILR+    I++   +I  LI NM + MY   GIGL+A QIG+  RL +I
Sbjct: 1   MILPILIYGNPILRKKCIEIDQSYQNINLLIKNMYDTMYKAKGIGLSAPQIGLSIRLFII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +  +   +K   VFINPKII       + +EGCLSIP+   ++KR   + + Y D N + 
Sbjct: 61  EYNNFYKKKFKKVFINPKIIKNYGYDLISKEGCLSIPNIIENIKRKNNLIIEYYDENWKK 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              + +GLL+  +QHE DH++G LFIDH+S +K  +I  K+ 
Sbjct: 121 YRQHFNGLLSIIIQHEYDHIDGKLFIDHISDMKNILIKNKLK 162


>gi|187477209|ref|YP_785233.1| peptide deformylase [Bordetella avium 197N]
 gi|115421795|emb|CAJ48306.1| peptide deformylase [Bordetella avium 197N]
          Length = 177

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV+ P+E+  S ++  LID+M + M    G+GLAA QIGV  +LV+
Sbjct: 1   MIHSILKMGDPRLLRVAAPVERFGSAELKQLIDDMFDTMAYAHGVGLAAPQIGVDLQLVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              + +    +       V  NP I   SD+     EGCLS+P  R  V R  +I  +  
Sbjct: 61  FGFERNPRYPDAPAVPKTVLCNPVITPLSDEMEDGWEGCLSVPGLRGLVPRYQYIRYQGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             +       A G  A  +QHE DHL G L+   +    +   T
Sbjct: 121 APDGTAIDREASGFHARVVQHECDHLIGRLYPSRIQDFSKFGFT 164


>gi|33603069|ref|NP_890629.1| peptide deformylase [Bordetella bronchiseptica RB50]
 gi|39931041|sp|Q7WG25|DEF2_BORBR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|33568700|emb|CAE34458.1| peptide deformylase [Bordetella bronchiseptica RB50]
          Length = 176

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV+ P+E+ +  ++  LID+M E M    G+GLAA QIGV  +LV+
Sbjct: 1   MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              + +    +       +  NP I   S +     EGCLS+P  R  V R   I     
Sbjct: 61  FGFERNDRYPDAPAVPRTILCNPVIEPLSGEMEDGWEGCLSVPGLRGLVPRYRHIRYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   Q     A+G  A  +QHE DHL G L+   +  L +   T+ +
Sbjct: 121 DPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTKFGYTEVL 167


>gi|229019065|ref|ZP_04175903.1| Peptide deformylase [Bacillus cereus AH1273]
 gi|229025309|ref|ZP_04181728.1| Peptide deformylase [Bacillus cereus AH1272]
 gi|228736000|gb|EEL86576.1| Peptide deformylase [Bacillus cereus AH1272]
 gi|228742233|gb|EEL92395.1| Peptide deformylase [Bacillus cereus AH1273]
          Length = 156

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDIDDDTGKIE---LINPVILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A   LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 IFLLEAKDFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|183220960|ref|YP_001838956.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
 gi|189911055|ref|YP_001962610.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|238687791|sp|B0SHH1|DEF_LEPBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687819|sp|B0SQM2|DEF_LEPBP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167775731|gb|ABZ94032.1| N-formylmethionyl-tRNA deformylase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779382|gb|ABZ97680.1| Peptide deformylase (PDF; Polypeptide deformylase) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 179

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++   +PILR+ S  + +      D   LI +M E M   DG+GLAA QIGVL +
Sbjct: 1   MAVRKILKIGNPILRQTSEDVSESEIQTKDFKKLIRDMFETMRHADGVGLAAPQIGVLKK 60

Query: 58  LVVIDLQDHAHR--KNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           LVV+  +D   R    P V     +NP+I   S     + EGCLS+P  R  V+R   I 
Sbjct: 61  LVVVGQEDDNERYPGTPEVPNQIILNPEITPLSPPRDGFWEGCLSVPGMRGYVERPNKIR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           +++ D N        +G  A  LQHE DHL G+L++D L   K
Sbjct: 121 MKWRDENYVEHDEIIEGYRAIVLQHECDHLFGVLYVDRLKSTK 163


>gi|238026898|ref|YP_002911129.1| peptide deformylase [Burkholderia glumae BGR1]
 gi|237876092|gb|ACR28425.1| Peptide deformylase [Burkholderia glumae BGR1]
          Length = 177

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V++P+E  +   +  L+ +M E M+  +G GLAA QIGV  +L++
Sbjct: 1   MIREILRMGDPRLLDVAKPVEAFDTPALHELVADMFETMHHANGAGLAAPQIGVGLQLII 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               ++A   +       V INP I     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGNNARYPDAPAVPETVLINPSIEYLPPDMEEGWEGCLSVPGMRGVVSRYRKVHYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           D   +     A+   A  +QHE DHL G L+   ++   +   T
Sbjct: 121 DQYGKRIDRIAEDFHARVVQHEYDHLIGKLYPMRITDFSKFGFT 164


>gi|222824460|ref|YP_002576034.1| peptide deformylase [Campylobacter lari RM2100]
 gi|222539681|gb|ACM64782.1| peptide deformylase [Campylobacter lari RM2100]
          Length = 173

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 4/159 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L   S  +E  + D+  L+D+M E M    G+GLAA+Q+ V  R +++
Sbjct: 1   MIRKIITYPNPRLFLESEKVENFDKDLHVLLDDMYETMIENKGVGLAAIQVDVPIRALLV 60

Query: 62  DLQDHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           D+ D       ++  +  INP I    D+     EGCLSIP +  DV R   I + Y D 
Sbjct: 61  DIGDEEGEQKDKQTLLEIINPIITPLDDEKISCNEGCLSIPGFYEDVMRYKNIQLDYQDR 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             + Q + A   LA  +QHE+DHL+G LFI+ LS LKR 
Sbjct: 121 FGKPQSLQAHDFLAVAIQHEVDHLDGHLFIEKLSFLKRQ 159


>gi|56698049|ref|YP_168420.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
 gi|56679786|gb|AAV96452.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
          Length = 165

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +I  +  +M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTVRRCLPWPDKHLRTRAAEVSEITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D    + R   +   NP+I+  S +   + E   ++P   A +KR   +TVR+++   Q
Sbjct: 61  VD--GSSERGRAVRLANPEILHASIELREHDEASPNLPGVSAKLKRPRAVTVRFLNEQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K  KL
Sbjct: 119 VDRRDFVGIEATSVQHQIDHLNGRMYFDNLSKVKRDMLLRKARKL 163


>gi|116787193|gb|ABK24406.1| unknown [Picea sitchensis]
          Length = 290

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 85/162 (52%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PD  LR  ++PI   +  +  L D M ++MY TDG+GL+A Q+GV  +L+V +   
Sbjct: 111 IVKYPDSRLRAKNKPINIFDEKLQRLADEMFDLMYKTDGVGLSAPQVGVNVQLMVFNPAG 170

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            + +   ++ +NP+I  +S    V+ EGCLS P+  ADV+R   + +   D   +  I+ 
Sbjct: 171 ESGKGEEVILVNPEIYKYSKRKEVFTEGCLSFPEIYADVERPMSVKIEAWDVKGKKFILS 230

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                A   QHE DHL  ILF + +     + I   +  L Q
Sbjct: 231 LKEFNARIFQHEYDHLQRILFFERMHPDILETIRPALQDLEQ 272


>gi|157165463|ref|YP_001465989.1| peptide deformylase [Campylobacter concisus 13826]
 gi|112801795|gb|EAT99139.1| peptide deformylase [Campylobacter concisus 13826]
          Length = 172

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 4/160 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L  +S+ +E  +  +  L+D+M E M + +GIGLAA+QIGV  R+ +I
Sbjct: 1   MILEVLSYPNKKLYEISKEVEVFDEKLHKLLDDMYETMIAKEGIGLAAIQIGVAKRIFII 60

Query: 62  DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L   +    ++N +  INPK     +   VYQEGCLS+P Y  DVKRS  + +++ D  
Sbjct: 61  NLANEEGVQDKENLIEIINPKF-ELREGECVYQEGCLSVPGYYEDVKRSEVVAIKFQDRF 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            + Q +  DGLLA  +QHE DHL+G LFI+ +   KR   
Sbjct: 120 GKEQTLKTDGLLAIAIQHENDHLDGHLFIEKIGFNKRKKF 159


>gi|33242441|ref|NP_877382.1| peptide deformylase [Chlamydophila pneumoniae TW-183]
 gi|33236952|gb|AAP99039.1| polypeptide deformylase [Chlamydophila pneumoniae TW-183]
          Length = 204

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+ S PI +I  +I NL+ +M + M +  G+GLAA Q+G    L V+
Sbjct: 19  MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 78

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            +              P VFINP +   S+   + +EGCLSIP  R +V R   ITV  M
Sbjct: 79  CVDRETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAM 138

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-RDMITKKMSKLVQ 167
           D N +    + +G  A  + HE DHLNG+L+ID +   K        + K+ +
Sbjct: 139 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 191


>gi|89052959|ref|YP_508410.1| formylmethionine deformylase [Jannaschia sp. CCS1]
 gi|88862508|gb|ABD53385.1| formylmethionine deformylase [Jannaschia sp. CCS1]
          Length = 164

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P V +PD  LR ++  +  +      +  +M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MPIRPFVPYPDKRLRTMAETVGPVTDAHREIWQDMIDTMDAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R   +   +P+II+ SD+ + Y EG  ++P   A + R A +TV + D    
Sbjct: 61  VDASD--DRGQAIRMADPEIISASDEMNTYPEGSPNLPGVTAKITRPARVTVAFTDHMGL 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                   L AT +QH++DHL G +++DHLSR KR+M+ KK  +
Sbjct: 119 RVRQEFVDLWATSVQHQIDHLAGKVYVDHLSRTKREMVIKKSRR 162


>gi|306822699|ref|ZP_07456077.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|309800930|ref|ZP_07695062.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
 gi|304554244|gb|EFM42153.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|308222466|gb|EFO78746.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
          Length = 161

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +   S +     EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNIDGKIGY-----VLNPVLEETSGE-QYGDEGCLSVPGLWYKTRRADYAQVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++   G++   LQHE DHL+G +++D L + +R    + M    Q
Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRNHRQ 161


>gi|237786237|ref|YP_002906942.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237759149|gb|ACR18399.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 220

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 24/187 (12%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   + P+ +   +I  L+ +M E +  + G+GLAA QIGV  RL V
Sbjct: 11  MTVRPIVIAGDPVLHNPTEPVTESPEEIAELVADMYETLELSHGVGLAANQIGVAKRLFV 70

Query: 61  IDLQD----------------HAHRKNPMVFINPKIITFSDDFSVYQ-------EGCLSI 97
            D  D                    +     +NP +   S+             EGCLS+
Sbjct: 71  YDCPDIEGPDGDSKSEEELKAQGGPRRKGCVVNPVL-ETSEIPETMPATDGSDAEGCLSV 129

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
           P       R+ +  V   D + +   +   G  A CLQHE+ HL+G L+ D L      M
Sbjct: 130 PGLDFPTGRAHWARVTGTDEHGEPVRVEGYGFFARCLQHEVGHLDGYLYTDMLIGRWARM 189

Query: 158 ITKKMSK 164
             KK+ +
Sbjct: 190 AKKKIKR 196


>gi|257124971|ref|YP_003163085.1| peptide deformylase [Leptotrichia buccalis C-1013-b]
 gi|257048910|gb|ACV38094.1| peptide deformylase [Leptotrichia buccalis C-1013-b]
          Length = 172

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 91/162 (56%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++  P LR+ S  ++ ++ ++   +D M+ +M   +G+GLAA Q+ +  R  V++   
Sbjct: 3   IVLYGHPTLRQKSEKVDVVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLEHDG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +      INP+I+ FSD+    +EGCLSIP     V R A I V+Y++ N +  +  
Sbjct: 63  VVKK-----VINPEILEFSDEIVDMEEGCLSIPGVFKKVNRPAKIKVKYLNENGKEVVEE 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + + +   QHE DH+ GILF D LS + + ++ KK+  L +
Sbjct: 118 LEEMWSRAFQHEFDHIEGILFTDKLSVMNKRLVAKKLDVLKR 159


>gi|154487371|ref|ZP_02028778.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis
           L2-32]
 gi|154083889|gb|EDN82934.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis
           L2-32]
          Length = 161

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +   S +     EGCLS+P      +R+ +  VR +D + +
Sbjct: 61  YNIDGKIGY-----VLNPVLEETSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++   G++   LQHE DHL+G +++D L + +R    + M    +
Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRTHRK 161


>gi|241662938|ref|YP_002981298.1| peptide deformylase [Ralstonia pickettii 12D]
 gi|240864965|gb|ACS62626.1| peptide deformylase [Ralstonia pickettii 12D]
          Length = 177

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV++P+E+    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 1   MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP I   S+D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNDRYPDAPAVPKTVLINPTIEPLSNDMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D +       A+G  A  +QHE DHL G+L+   +    R   T+ +
Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTRFGFTEVL 167


>gi|186686636|ref|YP_001869832.1| peptide deformylase [Nostoc punctiforme PCC 73102]
 gi|186469088|gb|ACC84889.1| peptide deformylase [Nostoc punctiforme PCC 73102]
          Length = 190

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 7/163 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++   +P LR+ +  +E I +  I  LI++++  +   +G+G+AA Q+   YRL ++  
Sbjct: 20  PIIQLGNPTLRQKAVWVENIQDKHIQKLIEDLIATVAKANGVGIAAPQVAQSYRLFIVAS 79

Query: 64  QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +A   N     P   INPKII  S +     EGCLS+P  R  V R   I V Y DC 
Sbjct: 80  RPNARYPNAPEMEPTAMINPKIIAHSTEVVKDWEGCLSVPGIRGLVPRYKSIEVEYTDCQ 139

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
              Q       +A   QHE DHL+GI+F+D L     DMIT++
Sbjct: 140 GNLQKQELTDFIARIFQHEYDHLDGIVFVDRLESTL-DMITEQ 181


>gi|256845417|ref|ZP_05550875.1| peptide deformylase [Fusobacterium sp. 3_1_36A2]
 gi|256718976|gb|EEU32531.1| peptide deformylase [Fusobacterium sp. 3_1_36A2]
          Length = 174

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 102/169 (60%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ 
Sbjct: 1   MVYEIKKYGEDVLKQIAKEVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D  +   RK     INP ++  +++   ++EGCLS+P     V+R   + ++Y++ N 
Sbjct: 61  VCDDGNGVVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILFI+ +S + + +I KK++ + + 
Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANMKKE 165


>gi|15618975|ref|NP_225261.1| peptide deformylase [Chlamydophila pneumoniae CWL029]
 gi|15836598|ref|NP_301122.1| peptide deformylase [Chlamydophila pneumoniae J138]
 gi|16753049|ref|NP_445322.1| peptide deformylase [Chlamydophila pneumoniae AR39]
 gi|6225254|sp|Q9Z6J2|DEF_CHLPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|4377403|gb|AAD19204.1| Polypeptide Deformylase [Chlamydophila pneumoniae CWL029]
 gi|7189698|gb|AAF38582.1| polypeptide deformylase [Chlamydophila pneumoniae AR39]
 gi|8979440|dbj|BAA99274.1| polypeptide deformylase [Chlamydophila pneumoniae J138]
          Length = 186

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +  PILR+ S PI +I  +I NL+ +M + M +  G+GLAA Q+G    L V+
Sbjct: 1   MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 60

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            +              P VFINP +   S+   + +EGCLSIP  R +V R   ITV  M
Sbjct: 61  CVDRETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAM 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-RDMITKKMSKLVQ 167
           D N +    + +G  A  + HE DHLNG+L+ID +   K        + K+ +
Sbjct: 121 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 173


>gi|78183988|ref|YP_376423.1| peptide deformylase [Synechococcus sp. CC9902]
 gi|123743565|sp|Q3AZU8|DEF_SYNS9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78168282|gb|ABB25379.1| peptide deformylase [Synechococcus sp. CC9902]
          Length = 201

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 2/160 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +       LR+ ++ I K+N  +  L  +ML  MY+  GIGLAA Q+ V  +L+VIDL 
Sbjct: 32  EIHTLGADALRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDLD 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP+I   S     Y+EGCLSIP    DV R   I + Y D   + + +
Sbjct: 92  LENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ADGL+A C+QHE+DHLNG+LF+D ++   +  + K++ +
Sbjct: 152 KADGLMARCIQHEMDHLNGVLFVDRVTD--QAGLQKELKE 189


>gi|282856366|ref|ZP_06265645.1| peptide deformylase [Pyramidobacter piscolens W5455]
 gi|282585737|gb|EFB91026.1| peptide deformylase [Pyramidobacter piscolens W5455]
          Length = 159

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 6/163 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++  +V FPDP+LRR +RP+   +  +   +D M  VM   DG+G+AA Q+GV  ++ V+
Sbjct: 1   MQLKIVEFPDPVLRRATRPVTVFDEALKTFVDEMTIVMKDDDGVGIAAPQVGVSKKVAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
             +         V +NP I+  +      +EGCLS P    +V+R+  + V   D     
Sbjct: 61  CFEG-----ERYVLVNPVIVEATG-TQRGEEGCLSFPGIFGEVERAERVVVECQDETGAK 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   A+G +A   QHE++HL G L IDH S +KR++I K++ K
Sbjct: 115 RRHEAEGFVARAFQHEIEHLEGKLLIDHFSPMKRELIRKRLMK 157


>gi|260887303|ref|ZP_05898566.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
 gi|330838943|ref|YP_004413523.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
 gi|260862939|gb|EEX77439.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
 gi|329746707|gb|AEC00064.1| peptide deformylase [Selenomonas sputigena ATCC 35185]
          Length = 155

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 96/160 (60%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +     P+L+ +  P+E++++ +  L+D+M E MY  +GIG+AA Q+G   R+VV
Sbjct: 1   MSLLEIKKAGAPVLKEICAPVERVDARLRKLLDDMAETMYEANGIGIAAPQVGEALRMVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       +  +NPKI TF +      EGCLS+P    +V+R+A + V ++D   +
Sbjct: 61  IDIGDGI-----IELVNPKI-TFREGSETDSEGCLSVPGIFGEVERAAKVKVEFLDRRGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + I A GLLA C+QHELDHL G+LFID    L+++   K
Sbjct: 115 RKHITAKGLLARCIQHELDHLEGVLFIDVAQSLRKEEEQK 154


>gi|302867673|ref|YP_003836310.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315505926|ref|YP_004084813.1| peptide deformylase [Micromonospora sp. L5]
 gi|302570532|gb|ADL46734.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315412545|gb|ADU10662.1| peptide deformylase [Micromonospora sp. L5]
          Length = 167

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 7/162 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62
           +P+ I  DP+LR  S P+   ++++  L+ ++++ +    G  G+AA QIGV  ++ V D
Sbjct: 2   RPIRIIGDPVLRTPSEPVTSFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVNAQVFVYD 61

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              H         INP +   SD+    +EGCLSIP       R+   T    D + +  
Sbjct: 62  ADGHRG-----HMINPTL-EVSDELQDDEEGCLSIPGLYFPTPRALHATAHGYDQHGEPL 115

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   G LA  LQHE DHL G L++D L    R    +++  
Sbjct: 116 TVTGSGFLARALQHETDHLRGRLYVDTLRGDTRRRALREIRA 157


>gi|312132641|ref|YP_003999980.1| def1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773592|gb|ADQ03080.1| Def1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 162

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++LE +      GL+A QIGV  R   
Sbjct: 1   MSIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +   S +     EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNIDGKVGY-----VLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++   GL+   LQHE DHL+G +++D L + +R    + M 
Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEERREALRYMR 157


>gi|167563193|ref|ZP_02356109.1| peptide deformylase [Burkholderia oklahomensis EO147]
          Length = 177

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L  V++P+E  N  ++  L+ +M E M+  +G GLAA Q+GV  ++++
Sbjct: 1   MIREILKMGDQRLLEVAKPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP +     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           D   +     A+G  A  +QHE DHL G L+   ++   +   T
Sbjct: 121 DQFGEKLERVAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGFT 164


>gi|110678659|ref|YP_681666.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114]
 gi|109454775|gb|ABG30980.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114]
          Length = 165

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 98/165 (59%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  +++ + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MSVRAYLKWPDARLRTAAADVAEITPEVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R+  +   NP+II  S   + ++E   ++P   A ++R   +TVR+MD    
Sbjct: 61  VDASDTRDRR--IRLANPEIIEASAIMNDHEEASPNLPGVFAKIRRPRGVTVRFMDETGT 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +      GL AT +QH++DHL G ++ D+LS++KRDM+ +K  KL
Sbjct: 119 YVQRDFVGLEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163


>gi|321472939|gb|EFX83908.1| hypothetical protein DAPPUDRAFT_47755 [Daphnia pulex]
          Length = 166

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/152 (45%), Positives = 101/152 (66%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P P+L R S PI+ I++ I   +D+MLE MY++ GIGLAA+Q+G+L R++V
Sbjct: 1   MAVLKIVEEPSPLLHRTSLPIKTIDATIHKALDDMLETMYASSGIGLAAIQVGLLKRMLV 60

Query: 61  IDLQDHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           IDL + +        P+  INP+I+  SD+ + + EGCLS+P +  ++ R A I VRY D
Sbjct: 61  IDLGEASESDTWAGKPLKIINPQILWTSDNQNTFNEGCLSVPQHYVEISRPAEIKVRYQD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID 148
              ++  I+A GLLATCLQHE+DHLNGI  ++
Sbjct: 121 ETGKYHEIHAAGLLATCLQHEIDHLNGITILN 152


>gi|224283170|ref|ZP_03646492.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171]
 gi|311064448|ref|YP_003971173.1| peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313140319|ref|ZP_07802512.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171]
 gi|310866767|gb|ADP36136.1| Def Peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313132829|gb|EFR50446.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171]
          Length = 162

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   PDP+LR     I +I   +  L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRTVPDPVLRTPCETIREITPSVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +   S +     EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNINGKIGY-----VLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             ++   GL+   LQHE DHL+G +++D L + +R    + M +  
Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMREHA 160


>gi|121594637|ref|YP_986533.1| peptide deformylase [Acidovorax sp. JS42]
 gi|222110774|ref|YP_002553038.1| peptide deformylase [Acidovorax ebreus TPSY]
 gi|120606717|gb|ABM42457.1| peptide deformylase [Acidovorax sp. JS42]
 gi|221730218|gb|ACM33038.1| peptide deformylase [Acidovorax ebreus TPSY]
          Length = 179

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV++P+   +   +  L+++M E M + +G GLAA QIG  +++V
Sbjct: 1   MTIRTILKMGDPRLLRVAQPVTAFDTPALHQLVNDMRETMQAVNGAGLAAPQIGEDWQVV 60

Query: 60  VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +    +   R        P V INP I     D     EGCLS+P  R  V R A I  R
Sbjct: 61  IFGSGERNPRYPDRPIVPPTVLINPVITPLGADEEDDWEGCLSVPGLRGKVPRFARIHYR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D         A+G  A  +QHE DHL G L+   +    +   T+ +
Sbjct: 121 GVDLLGAPIDRVAEGFHARVVQHECDHLIGKLYPMRVRDFTQFGYTEVL 169


>gi|33591309|ref|NP_878953.1| peptide deformylase [Bordetella pertussis Tohama I]
 gi|33598175|ref|NP_885818.1| peptide deformylase [Bordetella parapertussis 12822]
 gi|39931029|sp|Q7W0Q0|DEF1_BORPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|39931034|sp|Q7W4K0|DEF2_BORPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|33566733|emb|CAE38944.1| peptide deformylase [Bordetella parapertussis]
 gi|33570951|emb|CAE40418.1| peptide deformylase [Bordetella pertussis Tohama I]
 gi|332380711|gb|AEE65558.1| peptide deformylase [Bordetella pertussis CS]
          Length = 176

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV+ P+E+ +  ++  LID+M E M    G+GLAA QIGV  +LV+
Sbjct: 1   MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              + +    +       +  NP I   SD+     EGCLS+P  R  V R   I     
Sbjct: 61  FGFERNDRYPDAPAVPRTILCNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYRHIRYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   Q     A+G  A  +QHE DHL G L+   +  L +   T+ +
Sbjct: 121 DPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTKFGYTEVL 167


>gi|84496887|ref|ZP_00995741.1| peptide deformylase [Janibacter sp. HTCC2649]
 gi|84383655|gb|EAP99536.1| peptide deformylase [Janibacter sp. HTCC2649]
          Length = 217

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  +P+L R +  +E I+  I  L+ +M E M +  G+GLAA Q+GV  R+  
Sbjct: 1   MTIRPITITGEPVLHRRAESVEVIDDGIRELVADMFETMDAARGVGLAAPQVGVGLRIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIIT----FSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYM 115
             + +H       V INP +        D     + EGCLS+P     ++R    T+  +
Sbjct: 61  WQMDNHDGIPPRGVVINPFVTASKPVAGDPVPADESEGCLSVPGESFPLRRGETATLTGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           D +       A G  A   QHE DHLNG L++D L
Sbjct: 121 DLDGNDVSYAATGWFARMFQHEYDHLNGFLYVDRL 155


>gi|15892597|ref|NP_360311.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
 gi|23396566|sp|Q92HU7|DEFL_RICCN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|15619763|gb|AAL03212.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
          Length = 183

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 106/163 (65%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P+VFINP I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  N-NKSSPIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A+G LAT +QHE+++LNG  F+D LS+LKRD + KKM K ++L
Sbjct: 129 AEGFLATVIQHEIEYLNGKTFLDSLSKLKRDTLLKKMLKHIKL 171


>gi|257460312|ref|ZP_05625415.1| peptide deformylase [Campylobacter gracilis RM3268]
 gi|257442377|gb|EEV17517.1| peptide deformylase [Campylobacter gracilis RM3268]
          Length = 172

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/171 (35%), Positives = 102/171 (59%), Gaps = 4/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L + S  + K ++ +  L+D+M E M + +GIGLAA+Q+G   R ++I
Sbjct: 1   MILNVLTYPNKKLYQRSIEVVKFDAALGELLDDMYETMIAKNGIGLAAIQVGRPVRALII 60

Query: 62  DLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L +      +K+ +  INP+I+    +  V+QEGCLS+P +  DV R+ FITV++ D  
Sbjct: 61  NLANEEKIQDKKDLIEIINPQILKKEGE-VVFQEGCLSVPGFYEDVTRAEFITVQFQDRA 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                + A  LLA C+QHE+DHL+G LFI+ +   KR    K+  K ++ +
Sbjct: 120 GNTHEMDASELLAVCIQHEMDHLDGHLFIERIGYNKRKKFDKEFKKSLKEK 170


>gi|302844969|ref|XP_002954024.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
           nagariensis]
 gi|300260836|gb|EFJ45053.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
           nagariensis]
          Length = 177

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDP LR V+  I   +  ++ L + M+EVMY  DG+GLAA Q+GV  RL+V +   
Sbjct: 13  IVKYPDPRLRAVNARIGVFDDSLLRLANEMIEVMYQDDGVGLAAPQVGVNIRLMVFNPAG 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                N  + +NP+I+       + +EGCLS P    DV+RS  ITV+ +D N Q   + 
Sbjct: 73  RDRPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQITVKALDANGQPVRLQ 132

Query: 126 -ADGLLATCLQHELDHLNGILFIDHLSR 152
             D  +A   QHE DHL G+LF D +  
Sbjct: 133 LTDPWVARIFQHEYDHLQGVLFHDRMKP 160


>gi|74316798|ref|YP_314538.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259]
 gi|74056293|gb|AAZ96733.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC
           25259]
          Length = 177

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L   +R +E+   +++  L+ +M + M + +G GLAA QIGV  ++V
Sbjct: 1   MAVREVLKMGDPRLLAPARAVERFATAELAQLVADMHDTMRALNGAGLAAPQIGVSLQVV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           + ++        A      V +NP +   SD      EGCLS+P  R  V R   I  R 
Sbjct: 61  IFEVNANPRYPDAAEVPLTVLVNPVVTPLSDATEEGWEGCLSVPGMRGLVPRHGEIHYRG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            D   +       G  A  +QHE+DHLNGIL+   +  L+
Sbjct: 121 FDAAGRALERRVSGFHARVVQHEVDHLNGILYPMRIPDLR 160


>gi|310287535|ref|YP_003938793.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|309251471|gb|ADO53219.1| Peptide deformylase [Bifidobacterium bifidum S17]
          Length = 162

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   PDP+LR     I +I   +  L+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRTVPDPVLRTPCETIREITPAVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +   S +     EGCLS+P      +R+ +  VR +D +  
Sbjct: 61  YNINGKIGY-----VLNPVLEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             ++   GL+   LQHE DHL+G +++D L + +R    + M +  
Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMREHA 160


>gi|254445347|ref|ZP_05058823.1| peptide deformylase [Verrucomicrobiae bacterium DG1235]
 gi|198259655|gb|EDY83963.1| peptide deformylase [Verrucomicrobiae bacterium DG1235]
          Length = 191

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 18/176 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V + + +L    +P+ K ++++  L +NM++ MY  +GIGLAA Q+G+     V+
Sbjct: 1   MLLQIVQYGEKVLHETGKPVTKFDAELAELFENMVDTMYEAEGIGLAAQQVGLPLMFCVV 60

Query: 62  DLQDHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           DL       +              PM   NPK+         Y+EGCLS P+ R DV+R+
Sbjct: 61  DLNGCDPDFDYTLDGAKPPFDLFMPMAIANPKVELIKSKELAYEEGCLSFPEIRGDVERT 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            +I   + D      +I A+GLL  C+QHE+DHLNGILFID +    +  + KK+ 
Sbjct: 121 DWIRCEFQDLQGNPHVIEANGLLGRCIQHEVDHLNGILFIDRM----KKRVLKKIQ 172


>gi|317133049|ref|YP_004092363.1| peptide deformylase [Ethanoligenens harbinense YUAN-3]
 gi|315471028|gb|ADU27632.1| peptide deformylase [Ethanoligenens harbinense YUAN-3]
          Length = 160

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   D +LR+ SR +   +  +  L+D+M + +   DG+GLAA Q+G+L R VV
Sbjct: 1   MAIRKIVTVGDDVLRKKSRVVTVFDQKLHLLLDDMRDTLLQADGLGLAAPQVGILKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I + D       + F+NP+II    +     EGCLSIP      KR A +T+R  D N  
Sbjct: 61  IRIGDEF-----VDFVNPEIIAAEGEQQEL-EGCLSIPGKWGITKRPAKVTIRAQDRNGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                 +GLLA    HE DHL+G+L+ DH  R+
Sbjct: 115 FFEKTGEGLLARAFCHETDHLDGVLYTDHALRI 147


>gi|256832744|ref|YP_003161471.1| peptide deformylase [Jonesia denitrificans DSM 20603]
 gi|256686275|gb|ACV09168.1| peptide deformylase [Jonesia denitrificans DSM 20603]
          Length = 162

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAMREIRVVPDPVLRTKCDEITHIDDRVKGLVEDLLETVDMEGRAGLAANQIGVNLRAFA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ D          INP+I+  S++ +    EGCLS+P      +R  +  V  +D + 
Sbjct: 61  YNIDDDLGY-----VINPRIVELSEESYQDGDEGCLSVPGLWYPTRRHMYARVEGIDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   +    L+  CLQHE+DHL+G+L++D L R  R    +++  
Sbjct: 116 RPLTVEGTDLMGRCLQHEVDHLDGLLYLDRLERSVRRRAMQELRA 160


>gi|73541574|ref|YP_296094.1| peptide deformylase [Ralstonia eutropha JMP134]
 gi|72118987|gb|AAZ61250.1| Formylmethionine deformylase [Ralstonia eutropha JMP134]
          Length = 177

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L + +RP+E+ N  ++  LI++M + M   +G GLAA QIGV  ++V+
Sbjct: 1   MIREILKMGDARLLQQARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A +    V INP +   SDD     EGCLS+P  R  V R   +     
Sbjct: 61  FGFDRNPRYPDAPKVPKTVLINPMLEMLSDDLEDGWEGCLSVPGLRGVVPRHTRLRYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D         A+G  A  +QHE DHL GIL+   +    R   T+ +
Sbjct: 121 DLMGGSIDRVAEGFHARVVQHECDHLQGILYPMRVRDFTRFGFTEVL 167


>gi|325982985|ref|YP_004295387.1| peptide deformylase [Nitrosomonas sp. AL212]
 gi|325532504|gb|ADZ27225.1| peptide deformylase [Nitrosomonas sp. AL212]
          Length = 177

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   +P+L +V++P+++ +  ++  LI +M + M   +G GLAA QIGV  ++V
Sbjct: 1   MAIKPVLKMGEPLLLQVAKPVDRFDTPELHELIQDMQDTMAYLNGAGLAAPQIGVSLQVV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +   +       A      V +NP +   SD+     EGCLS+P  R  V R   +  + 
Sbjct: 61  IFGFEKNQRYPDADEVPFTVLLNPHLTPLSDEKEDGWEGCLSVPGLRGIVPRYTNLHYQG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            D          +G  A  +QHE DHL GIL+   +   +
Sbjct: 121 FDQYGSAIDRNVNGFHARVVQHECDHLQGILYPMRIKDFR 160


>gi|189467964|ref|ZP_03016749.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM
           17393]
 gi|189436228|gb|EDV05213.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM
           17393]
          Length = 186

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 15/182 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + KP+ ++ + +LR+    IE+   +I  +I+ M + +   DG GLAA QI +  +L ++
Sbjct: 1   MIKPITVYGNSVLRKECEDIEQNYPNIQEVIETMWQTLRDADGCGLAAPQINLPIKLFIV 60

Query: 62  DLQDH------AHRKNPMV---------FINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           + +D         R++  V         FIN KII +S+      EGCLSIPD   +V R
Sbjct: 61  NSKDTYTYMSAKEREHFFVEEDCGIEETFINAKIIAYSEKVWTAGEGCLSIPDLYEEVTR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +T+RY D   + Q     G  A  +QHE +H  G L+ID LS L++ +I  K+ +++
Sbjct: 121 PWSVTIRYQDNEFKEQNRTYYGYTARIIQHEFEHTQGKLYIDRLSPLRKQLIKNKLMRII 180

Query: 167 QL 168
           + 
Sbjct: 181 KG 182


>gi|154509144|ref|ZP_02044786.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798778|gb|EDN81198.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC
           17982]
          Length = 163

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I  ++  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NP+I+  SD ++    EGCLS+P+     +R+ +      D + 
Sbjct: 61  WNIDGEIGY-----VLNPRIVALSDDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  ++  + L+A C+QHE DHL+G ++ID L R  R    + + 
Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRATRKKALRDIR 159


>gi|34762409|ref|ZP_00143410.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|237742081|ref|ZP_04572562.1| polypeptide deformylase [Fusobacterium sp. 4_1_13]
 gi|294785287|ref|ZP_06750575.1| peptide deformylase [Fusobacterium sp. 3_1_27]
 gi|27887934|gb|EAA25001.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|229429729|gb|EEO39941.1| polypeptide deformylase [Fusobacterium sp. 4_1_13]
 gi|294487001|gb|EFG34363.1| peptide deformylase [Fusobacterium sp. 3_1_27]
          Length = 174

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 102/169 (60%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   +  + + +L+++++ +E  +IN +    +D+M+E MY TDG+GLAA QIGV  R+ 
Sbjct: 1   MVYEIKKYGEDVLKQIAKKVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D  +   RK     INP ++  +++   ++EGCLS+P     V+R   + ++Y++ N 
Sbjct: 61  VCDDGNGVVRK----VINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +     A+  LA  +QHE DHL+GILFI+ +S + + +I KK++ + + 
Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANMKKE 165


>gi|149176747|ref|ZP_01855358.1| peptide deformylase [Planctomyces maris DSM 8797]
 gi|148844388|gb|EDL58740.1| peptide deformylase [Planctomyces maris DSM 8797]
          Length = 196

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 2/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P P LR  S+P++ I  ++ +++ NM ++MY   GIGLAA Q+ + YRL V
Sbjct: 1   MPALQIVNYPHPALRWKSKPVKSITPELRDIVRNMFDLMYEARGIGLAANQVALPYRLFV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           I+L  D    +   VFINP+I       +  +EGCLS+P    DVKRS  ITV   D N 
Sbjct: 61  INLTSDPNEPEEEFVFINPEITKRKG-TAEGEEGCLSLPQVYGDVKRSEEITVEAYDLNG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           Q   I  D L A  +QHE DH+ GI+F D +   KR+ I
Sbjct: 120 QLFEITLDDLAARAVQHEHDHIEGIMFPDRMVEAKRNEI 158


>gi|296130000|ref|YP_003637250.1| peptide deformylase [Cellulomonas flavigena DSM 20109]
 gi|296021815|gb|ADG75051.1| peptide deformylase [Cellulomonas flavigena DSM 20109]
          Length = 162

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR    PI  I+  + +L++++LE +      GLAA QIGV  R   
Sbjct: 1   MALREIRTVGDPVLRTPCDPITTIDERVRSLVEDLLETVDMDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ D          +NP I+  S D++    EGCLS+P       R+ +  V   D + 
Sbjct: 61  WNIDDEIGY-----VLNPVIVELSEDEYQDGDEGCLSVPGLWFPTHRAWYARVVGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  ++    L+A CLQHE+DHL+G+L++D L R  R    + + +
Sbjct: 116 REVVVEGTELMARCLQHEVDHLDGMLYLDRLERSVRKKAMRAIRE 160


>gi|239917583|ref|YP_002957141.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|281413931|ref|ZP_06245673.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|239838790|gb|ACS30587.1| peptide deformylase [Micrococcus luteus NCTC 2665]
          Length = 191

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 78/151 (51%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+   PDP+LR  + P+    +D+  L+ +M+  M++  G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPVRTVPDPVLRTAASPV-PAGADVRALVADMIATMHAVGGVGLAAPQVGVGLRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+   A        +NP + T         EGCLS+P  R    R A   VR  D +  
Sbjct: 60  FDVAGVAG-----HVVNPVLETAGQALREPGEGCLSVPGLRYHPARDAEAVVRGTDVDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                  GLLA CLQHE DHL+GIL++D L 
Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRLD 145


>gi|225848865|ref|YP_002729029.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643764|gb|ACN98814.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 179

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 8/172 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-- 63
           +  +PD IL+  ++ I+  +  +   ID M E MY  +G+GLAA QIG+ Y+++VID   
Sbjct: 5   IRTWPDKILKEPTKEIDFFDDRLKEYIDKMWEFMYKEEGVGLAANQIGIPYQILVIDTSI 64

Query: 64  -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                ++       MV INPKI+   +   +  EGCLS P  +  + R   + V   +  
Sbjct: 65  REKKNEEETEPPVKMVLINPKIVEK-EGQVMSTEGCLSFPGVQITIPRYKRVKVVGKNEK 123

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +  ++ +   L+  LQHE+DHLNGI FI +LS LKR ++  K  K ++  +
Sbjct: 124 GEDVVVESSEFLSIVLQHEIDHLNGIPFISYLSPLKRKLVLDKYLKSLKESE 175


>gi|260427470|ref|ZP_05781449.1| peptide deformylase [Citreicella sp. SE45]
 gi|260421962|gb|EEX15213.1| peptide deformylase [Citreicella sp. SE45]
          Length = 164

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  + P+E I  +I  +  +M++ M +  G+GL A QIGV+ RL V
Sbjct: 1   MTARLCIPWPDKRLRTPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R   +   NP+++  S     + E   ++P   A + R   + VR+++   +
Sbjct: 61  VDASEK--RGEAVRMANPEVLHASVKLRSHDEASPNLPGVWASIDRPRAVAVRFLNAEGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +     GL AT +QH++DHLNG ++ DHLS++KRDM+ ++  K
Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGRMYFDHLSKVKRDMLLRRAKK 162


>gi|255070681|ref|XP_002507422.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299]
 gi|226522697|gb|ACO68680.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299]
          Length = 257

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 90/162 (55%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +P   LR  ++ +   +SD+  L   M ++MY T+G+GLAA Q+GV YR++V +   
Sbjct: 86  IQKYPHASLRNDNKIVGVFDSDLEKLAQAMFKIMYDTEGVGLAAPQVGVNYRMMVYNEAG 145

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              R   +V +NPKI+ FS    +++EGCLS P   ADV+R   + V   +   +   + 
Sbjct: 146 EPGRGKEVVLVNPKIVKFSKTKDLFEEGCLSFPKIYADVERPTSVQVEAQNLRGKKFKMT 205

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            DG  A   QHE DHL+G+LF D ++   R  +  ++  L++
Sbjct: 206 LDGFEARVFQHEYDHLDGVLFHDRMTDEVRGTVQGELDALIE 247


>gi|323699398|ref|ZP_08111310.1| peptide deformylase [Desulfovibrio sp. ND132]
 gi|323459330|gb|EGB15195.1| peptide deformylase [Desulfovibrio desulfuricans ND132]
          Length = 165

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 1/166 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++  +  +PD +L   + PI +I  ++  LI+NM++ MY +DG+GLAA Q+    RL+ +
Sbjct: 1   MRLEICTWPDEVLEAKAEPITEITPELDELIENMVQTMYESDGVGLAAPQVNQSIRLICV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      R +  V INP+I+    +     EGCLS P+    V+R   + V+ ++ + + 
Sbjct: 61  DQTGPKERGDLRVLINPEIVECDGEVESD-EGCLSCPELNLKVRRKERVKVKALNRSGKE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             +   GLLA  LQHE+DHL G+   D   RLK+ M  KK  +  +
Sbjct: 120 ICVETGGLLAIILQHEIDHLEGVTLADRSGRLKKAMYRKKALRWKR 165


>gi|308069676|ref|YP_003871281.1| peptide deformylase (PDF) [Paenibacillus polymyxa E681]
 gi|305858955|gb|ADM70743.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681]
          Length = 165

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 94/153 (61%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+ PD +L +V++ + KI  ++  L+D+M + MY  +G+GLAA Q+G+L RL+V
Sbjct: 1   MSIRIIVLEPDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D       +  INP+I+   +   +  EGCLSIP    DV+R+  +TV+ +D   +
Sbjct: 61  VDAGD---EHGLIKMINPEIVAE-EGEELGPEGCLSIPGLNGDVRRAEKVTVKGLDREGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A GLL+   QHE+DHLNGILF D   ++
Sbjct: 117 AITVTATGLLSRAFQHEIDHLNGILFTDIAEKV 149


>gi|145345192|ref|XP_001417104.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901]
 gi|144577330|gb|ABO95397.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901]
          Length = 240

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 84/157 (53%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +P   LR  + P+E  + ++  L   M ++MY T G GLAA Q+GV YR++V +   
Sbjct: 68  IAKYPAKCLRAKNAPVETFDKNLERLSKAMFKIMYETVGCGLAAPQVGVNYRMMVYNEAG 127

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +   +V  NP+I+ FS +  +++EGCLS P   ADV+R   + +   +   +   + 
Sbjct: 128 EPGQGREVVLCNPEIVKFSKEKDLFEEGCLSFPKMYADVERPIGVQIEAQNLKGKKFKMT 187

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +G  A   QHE DHL+G+L+ D +S   R  +   +
Sbjct: 188 LEGFEARVFQHEYDHLDGVLYHDRMSPEVRASVQSTL 224


>gi|317402414|gb|EFV82986.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
          Length = 177

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L RV+ P+E+ +  ++  LI++M E M +  G+GLAA QIGV  +LV+
Sbjct: 1   MIHSILKMGDPRLLRVAPPVERFDTPELHALIEDMFETMAAAQGVGLAAPQIGVDLQLVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       +  NP I   SDD     EGCLS+P  R  V R   I  +  
Sbjct: 61  FGFDRNERYPDAPAVPQTILCNPVITPLSDDMEDGWEGCLSVPGLRGLVPRYRHIRYQGK 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D   +     A+G  A  +QHE DHL G L+   +    +   T+
Sbjct: 121 DPYGRDIDREAEGFHARVVQHECDHLIGRLYPSRIQDFSKFGFTE 165


>gi|229918580|ref|YP_002887226.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
 gi|229470009|gb|ACQ71781.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
          Length = 466

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/145 (38%), Positives = 78/145 (53%), Gaps = 4/145 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ ILR    P+ K +  +   +D + + MY  DG+G+AA Q+ +  RL V+   D
Sbjct: 4   VVEVPNDILRVTCEPVTKFDKKLRQTVDRLFDTMYEYDGVGVAAPQVNLNQRLAVVHTDD 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+V INP+II  S    V  EGCLSIP     V+R   I V+  D   +   I 
Sbjct: 64  ETG---PLVLINPEIIETSG-REVGLEGCLSIPGEFGFVERHESIVVKNQDVKGRTHTIQ 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150
           A G  A  +QHE+DHL+G+LF D L
Sbjct: 120 ASGFFARAIQHEMDHLDGVLFTDKL 144


>gi|224825207|ref|ZP_03698313.1| peptide deformylase [Lutiella nitroferrum 2002]
 gi|224602878|gb|EEG09055.1| peptide deformylase [Lutiella nitroferrum 2002]
          Length = 170

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 6/157 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +K+P +    P+LR+ +  + + +   +  L+ +M +  Y+ +G+GLAA QIGV  R++V
Sbjct: 1   MKRPFLPQEHPMLRQHAAAVTEFDTPALHELVQDMFDTQYAGNGVGLAAPQIGVPLRVIV 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                 +    A    P V INP+I   ++      EGC S+P  R  V R   I  R  
Sbjct: 61  FAYGGGERDPGAPAIPPTVLINPEIRPDAEHIEEDWEGCFSVPGQRGRVPRWQAIRYRAQ 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           D   +     A+G  A  +QHE+DHLNG LFIDHL  
Sbjct: 121 DIQGRLVEGRAEGFHARIIQHEVDHLNGTLFIDHLPP 157


>gi|118594792|ref|ZP_01552139.1| peptide deformylase [Methylophilales bacterium HTCC2181]
 gi|118440570|gb|EAV47197.1| peptide deformylase [Methylophilales bacterium HTCC2181]
          Length = 171

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K ++   DP+L   ++PIE +N  ++  +I++M+E M + DG GLAA QIG+  +LV
Sbjct: 1   MAIKDILKMGDPLLLSAAQPIEAVNTPELNQIIEDMIETMKANDGAGLAAPQIGLSIQLV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP+II   ++     EGCLS+P  R  V R   I  + 
Sbjct: 61  IFGFDSNERYPDAEEVPFTVLINPEIIPLEEEMEDGWEGCLSVPGLRGVVPRYKSIHYKG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +D   Q      DG  A  +QHE DHL G L+   ++ +
Sbjct: 121 IDQFGQTIDRKVDGFHARVVQHECDHLIGKLYPMRMNDM 159


>gi|33863868|ref|NP_895428.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313]
 gi|124022020|ref|YP_001016327.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303]
 gi|39930996|sp|Q7V5F9|DEF2_PROMM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|33635451|emb|CAE21776.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9313]
 gi|123962306|gb|ABM77062.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 201

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/148 (39%), Positives = 93/148 (62%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    + +LR+ +R I K++  + +L+ +ML  MY+  GIGLAA Q+G+  +L+V+DL  
Sbjct: 33  IHTLGNGVLRQSTRRIGKVDESVRDLVRDMLRSMYAAKGIGLAAPQVGIHKQLLVLDLDL 92

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+V INP+II+ S     Y+EGCLSIP    +V R + I + + D   + + + 
Sbjct: 93  ETPTTPPVVLINPEIISSSATVETYEEGCLSIPGVYLNVVRPSEIVLSFRDEMGRPRKMK 152

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153
           ADGL+A C+QHE+DHL G+LF+D ++  
Sbjct: 153 ADGLMARCIQHEMDHLEGVLFVDRVTDE 180


>gi|167570376|ref|ZP_02363250.1| peptide deformylase [Burkholderia oklahomensis C6786]
          Length = 177

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L  V+RP+E  N  ++  L+ +M E M+  +G GLAA Q+GV  ++++
Sbjct: 1   MIREILKMGDQRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP +     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           D   +     A+G  A  +QHE DHL G L+   ++   +   T
Sbjct: 121 DQFGEKLERVAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGFT 164


>gi|315924512|ref|ZP_07920733.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622216|gb|EFV02176.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 172

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L  + DPILR+ +R I +IN  I  L  +MLE MY  DG+GLAA Q+GVL +LVV
Sbjct: 1   MAIRKLRYYDDPILRKRAREITEINDRIKTLAADMLETMYDDDGVGLAAPQVGVLRQLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      + P+  INP+I++ S    V  EGCLS PD    V+R  ++T R+ +   Q
Sbjct: 61  IDVG-----QGPITMINPEIVSQSGSI-VDSEGCLSFPDEAGYVERPEYVTARFTNLEGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD--MITKKMSKLVQL 168
              +    LLA  + HELDHL G +FID    +++   MI ++  +L + 
Sbjct: 115 RCEVKGHMLLARAICHELDHLKGEVFIDKKIPVEKAEVMIAEQEKRLAKE 164


>gi|296141405|ref|YP_003648648.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
 gi|296029539|gb|ADG80309.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
          Length = 198

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 15/176 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+VI  DP+L   + P+E     + +++I+ L+D+MLE M   +G+GLA  Q+G  
Sbjct: 1   MAVLPIVIVGDPVLHTPTTPVELDADGRPDAEIVALLDDMLETMDRANGVGLAGNQVGRD 60

Query: 56  YRLVVIDLQDHA-HRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
            RL V D  D   H +     INP     +I     D     EGCLS+P       R+ +
Sbjct: 61  LRLFVYDCPDEETHERRRGEVINPVLTTSEIPETMPDPDDDWEGCLSVPGESFPTGRADW 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID----HLSRLKRDMITKK 161
             V   D N +   I   G  A  LQHE  HL+G L+ D      +R  +  I K+
Sbjct: 121 AKVVGTDRNGEKVEIEGTGFFARMLQHETGHLDGFLYTDVLVGRYARQAKKFIKKQ 176


>gi|159038089|ref|YP_001537342.1| peptide deformylase [Salinispora arenicola CNS-205]
 gi|157916924|gb|ABV98351.1| peptide deformylase [Salinispora arenicola CNS-205]
          Length = 168

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  +P+ +  DP+LR  + P+   ++++  L+ ++++ +    G  G+AA QIGV  R+ 
Sbjct: 1   MTMRPIRLIGDPVLRTPAEPVTSFDAELRALVADLMDTLLGAPGRAGVAAPQIGVSARVF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V D   H         +NP +    D+     EGCLS+P       R+   T   +D + 
Sbjct: 61  VYDADGHRG-----HLVNPTL-ELGDEQQDDDEGCLSVPGLYFPTSRAMHATAHGVDQHG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           Q   I   G LA  LQHE DHL G L++D L    R    +++  
Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTLRGEIRRRALREIRA 159


>gi|226312666|ref|YP_002772560.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
 gi|226095614|dbj|BAH44056.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
          Length = 175

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 102/173 (58%), Gaps = 9/173 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M ++ +V   DPILR  S+ ++ I   +  ++D+M++ +Y+  G  GL+A+QIG+  RLV
Sbjct: 1   MAERMIVRLGDPILRETSKRVQSITPQVEKILDDMVQTIYAAKGRAGLSAIQIGIPKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D          +  INP ++  S +  V QE CLSIP     V+R+ ++ V+ ++   
Sbjct: 61  VMDCG-----SGLIELINPVLMEKSGE-QVGQEACLSIPGVFGIVRRANYVKVQTLNRQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQLRD 170
           + + I A+  LA C+QHE+DHL GILFIDH   L      KK+++  L +++D
Sbjct: 115 ETKTIEAEDFLARCIQHEMDHLEGILFIDHTEELYSAKTGKKLNRKDLHRIQD 167


>gi|120401747|ref|YP_951576.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1]
 gi|158513127|sp|A1T320|DEF_MYCVP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|119954565|gb|ABM11570.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1]
          Length = 197

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 12/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +P+ I  DP+L   + P+          D+ +LI +M + M +  G+GLAA QIGV 
Sbjct: 1   MAVRPIRIVGDPVLHTATEPVPVGADGSLPADLADLITDMYDTMDAAHGVGLAANQIGVS 60

Query: 56  YRLVVIDLQDHAHR--KNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   +  +   V INP     +I     D     EGCLS+P       R+ 
Sbjct: 61  KRVFVYDCADERKKTTRRRGVVINPVLETSEIPETMPDPEDDDEGCLSVPGESFPTGRAD 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  V  +D +     +    L A  LQHE  HL+G L++D L         K + 
Sbjct: 121 WARVTGLDADGTPITLEGTDLFARMLQHETGHLDGFLYLDRLIGRNARSAKKTVK 175


>gi|291167035|gb|EFE29081.1| peptide deformylase [Filifactor alocis ATCC 35896]
          Length = 147

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 67/153 (43%), Positives = 91/153 (59%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D +LR+VSRP+ ++   I  LI +M++ MY  DG+GLAA Q+GVL R++V
Sbjct: 1   MAIREVRIDGDEVLRKVSRPVTEMTPRIEQLIGDMIDTMYQYDGVGLAAPQVGVLRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      PMVFINP+I+    +    QEGCLSIP    DVKR   + V   +   +
Sbjct: 61  IDIGE-----GPMVFINPEIVEQEGE-QCGQEGCLSIPGVYMDVKRPNHVVVTAKNEKME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +  D LLA  L HE+DHLNGILF D   R 
Sbjct: 115 DIRVEGDELLARALCHEIDHLNGILFKDIAERE 147


>gi|330991623|ref|ZP_08315574.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1]
 gi|329761642|gb|EGG78135.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1]
          Length = 173

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FP   L++ + P++  ++    L  ++LE M++  GIG+ A  +G+L RLVV
Sbjct: 1   MAILPIIRFPHACLQQAAAPVDATSARTTELARDLLETMHAAPGIGITACHVGMLLRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P    NP+II      +  +EG +S+P   A V R A + VRY   +  
Sbjct: 61  IDLPGGNG---PQARANPEIIWQDTATATAEEGSVSMPGIHAPVTRPARVRVRYTGLDGL 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA CLQHE+D +NGI +   LS L+RD   K+ S+  +L
Sbjct: 118 MVEEEAEGLLAACLQHEIDQINGIFWTRRLSPLRRDRAMKRYSRQTRL 165


>gi|218892912|ref|YP_002441781.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
 gi|254234257|ref|ZP_04927580.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719]
 gi|126166188|gb|EAZ51699.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719]
 gi|218773140|emb|CAW28952.1| probable peptide deformylase [Pseudomonas aeruginosa LESB58]
          Length = 179

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R+++P+      + ++  LID+M E M+   G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +      +     P + +NP+I    D+     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D   Q      +G  A  +QHE DHL G L+   ++   +   T+ +
Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTEVL 169


>gi|118581913|ref|YP_903163.1| peptide deformylase [Pelobacter propionicus DSM 2379]
 gi|118504623|gb|ABL01106.1| peptide deformylase [Pelobacter propionicus DSM 2379]
          Length = 168

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 98/166 (59%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M   P++ +P P+L+++   +  I+ +I  LI ++L+ M +  G +G+AA QIGV  R  
Sbjct: 1   MAIHPILRYPHPLLKKICHEVTGIDREIHALIQDLLDTMRAGPGSVGVAAPQIGVTLRAC 60

Query: 60  VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+        +    +  INP+II  S   +V +EGC+S+PDY  DV+RS  + V ++
Sbjct: 61  VVDVSNSRNGRENNHGLLRMINPRIIARSGS-AVMREGCMSVPDYTGDVERSTELRVSFL 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           +   + + I A G  A  LQHE+DHL+GILF+D +  +K  +  +K
Sbjct: 120 EPEGELREITASGFEAVALQHEMDHLDGILFLDRIVSVKTGLFRRK 165


>gi|289706123|ref|ZP_06502494.1| peptide deformylase [Micrococcus luteus SK58]
 gi|289557156|gb|EFD50476.1| peptide deformylase [Micrococcus luteus SK58]
          Length = 210

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 7/167 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M   +P+ ++ +P+L R +  +E I+ +I  LI++M     +  G+GLAA Q+GV  R+ 
Sbjct: 1   MASIRPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAAPQVGVGLRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDD------FSVYQEGCLSIPDYRADVKRSAFITVR 113
                D     N    INP +               + EGCLS+P     ++R   + + 
Sbjct: 61  TWTFPDSGDAPNVGHVINPVLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
               + +     A+G  A  +QHE DHLNG L+++ L    +    +
Sbjct: 121 GQRVDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEGKWQRRWKR 167


>gi|226226031|ref|YP_002760137.1| peptide deformylase [Gemmatimonas aurantiaca T-27]
 gi|226089222|dbj|BAH37667.1| peptide deformylase [Gemmatimonas aurantiaca T-27]
          Length = 196

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 95/174 (54%), Gaps = 13/174 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + +   P+LR+ ++ +E +  ++  L+DNM + M +  G+GLAA Q+G L RL V
Sbjct: 1   MSLLDIHVLGSPVLRQETQRVESVTPELRRLVDNMFDTMEAAKGVGLAAPQVGRLERLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D       +V INP+II   +     +EGCLSIP+  ADV R A + VR  D +  
Sbjct: 61  VDADDVR-----LVVINPEII-LREGLERGEEGCLSIPEVYADVDRPARVIVRAQDIDLN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK-------KMSKLVQ 167
              + A  LL  CLQHE+DHL G LF D LS LK+    K       K  KL++
Sbjct: 115 WYEVDAANLLGRCLQHEIDHLFGKLFTDRLSLLKKRSAMKDWDHEKGKYPKLLR 168


>gi|222056880|ref|YP_002539242.1| peptide deformylase [Geobacter sp. FRC-32]
 gi|221566169|gb|ACM22141.1| peptide deformylase [Geobacter sp. FRC-32]
          Length = 168

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 103/169 (60%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + ++++P P+L+++  P+  I+ +I  L+ ++L+ M++  G +G+AA QIGV  R+ 
Sbjct: 1   MPGQKILLYPHPVLKKLCHPVGAIDGEIKGLLQDLLDCMHAGPGSVGVAAPQIGVTLRVC 60

Query: 60  VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+        +    +  INP I   S   ++ +EGC+S+PDY  DV+R+  ITVR+ 
Sbjct: 61  VVDVSNSRNGKDNNHGLLQLINPVITERSGA-AIMREGCMSVPDYTGDVERATEITVRFT 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N   + + A G  A  +QHE+DHL+G+LF+D ++ LK  +  +K  K
Sbjct: 120 DGNGIEREVKASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKNYK 168


>gi|134102367|ref|YP_001108028.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|291009319|ref|ZP_06567292.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914990|emb|CAM05103.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338]
          Length = 166

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 5/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DP+LR  + P+   +  + +++ ++L+ + +    GLAA QIGV  R   
Sbjct: 1   MAFREIRRFGDPVLRTPAEPVTVFDDRLRSVVADLLDTVDAPGHAGLAAPQIGVGIRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP+++  S++     EGCLS+P+   D  R+    VR +D + +
Sbjct: 61  YNVDGEIGY-----VVNPEVVELSEEQQEGPEGCLSVPELWFDTPRARHAVVRGVDADNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +   GL+A CLQHE DHL+G++++  L+ 
Sbjct: 116 PVTVSGSGLMARCLQHETDHLDGMIYVQRLAP 147


>gi|167750831|ref|ZP_02422958.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702]
 gi|167656266|gb|EDS00396.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702]
          Length = 160

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ +    D  LR+  + +   +  +  ++D+M E M   +G+GLAA QI VL R+VV
Sbjct: 1   MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +      INP I +         EGCLS+P     V R A + V+  D   +
Sbjct: 61  IDVGDEHGKIE---LINPVITSMKGKQHEL-EGCLSLPGMWGYVDRPAKVKVKAQDRYGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  L HE+DHL+GILF D    L      ++  K
Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADELLTSEQLEERKK 160


>gi|291277234|ref|YP_003517006.1| polypeptide deformylase [Helicobacter mustelae 12198]
 gi|290964428|emb|CBG40278.1| polypeptide deformylase [Helicobacter mustelae 12198]
          Length = 171

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 96/155 (61%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P P+LR+ S+ ++  ++ +   +D+M + M   +G+GLAAVQ+G L+R+++
Sbjct: 1   MAVLEVLSYPHPLLRQKSKEVQNFDASLHAFLDDMYDTMLEREGVGLAAVQVGRLHRILL 60

Query: 61  IDLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +++        ++++ +  INP I+   ++   + EGCLS+P +  +VKR   IT+ Y D
Sbjct: 61  VNIPRQEDGKQYKEDLLEIINPVIL-HQEEEIFWNEGCLSVPGFYEEVKRYGSITLGYQD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                Q++ A G LA  LQHE+DHL GILFID LS
Sbjct: 120 RFGGEQVLRAQGFLAVALQHEMDHLEGILFIDKLS 154


>gi|289209646|ref|YP_003461712.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
 gi|288945277|gb|ADC72976.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
          Length = 178

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 9/174 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++    P LRRV  P+ + +     +  L+D++++ M++++G+GLAA QIGV +R
Sbjct: 1   MSVRRILRMGHPDLRRVCDPVPESDFDSPGLHALVDDLVDTMHASEGLGLAAAQIGVPHR 60

Query: 58  LVVIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           + VI++Q    R         +  +NP +         Y EGCLS+P  R +V R   I 
Sbjct: 61  VAVIEIQPGNTRYPGAVPTGRLALVNPVVTVLDPTPQRYWEGCLSVPGLRGEVARPRHIA 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           V Y + +   + +  +G LAT  QHE+DHL+G LFID ++   R     +  + 
Sbjct: 121 VDYHEPDGTPRHLEPEGFLATVFQHEIDHLDGTLFIDRVTDTTRLAFLDEYREF 174


>gi|172057935|ref|YP_001814395.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171990456|gb|ACB61378.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15]
          Length = 461

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 4/145 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ +LR+  + + K +  +  +ID M + MY  DG+GLAA QI    R+ V+   D
Sbjct: 4   VVEVPNEVLRQKCQRVTKFDKKLGKMIDRMFDTMYEYDGVGLAAPQINQPIRVAVVHTDD 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+II  +    +  EGCLS+P     V+R   I V+  D   +   I 
Sbjct: 64  ETG---PIELINPEIIEATGS-EIDDEGCLSMPGIFGPVERFEQIVVKSQDRLGRSVKIK 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL 150
           A+G  A  +QHE+DHL+G+LF D L
Sbjct: 120 ANGFFARAIQHEMDHLDGVLFTDKL 144


>gi|257791461|ref|YP_003182067.1| peptide deformylase [Eggerthella lenta DSM 2243]
 gi|257475358|gb|ACV55678.1| peptide deformylase [Eggerthella lenta DSM 2243]
          Length = 183

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 81/158 (51%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+PIL +V  P +  +  +  L   M + MY  DG GLAA Q+GV  RLVVID   
Sbjct: 7   IVQSPNPILNQVCDPCDLGDKSLKKLAKQMAKAMYKNDGCGLAAPQLGVAKRLVVIDCDQ 66

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               +NP+V +NP ++    D  V  EGCLS P     + R  F  VRY D + +   I 
Sbjct: 67  EEGEQNPIVLVNPVLVDTQGDPVVAGEGCLSCPGITVPIARPPFARVRYFDLDGEEWEIE 126

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            D LL  CLQHELDHL+GI   +    + R    +   
Sbjct: 127 GDDLLGRCLQHELDHLDGITMFERCDPMARIEALRDYE 164


>gi|86738737|ref|YP_479137.1| peptide deformylase [Frankia sp. CcI3]
 gi|86565599|gb|ABD09408.1| peptide deformylase [Frankia sp. CcI3]
          Length = 230

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 4/170 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            + + +  +P+L R  + I +   +++  LID+M   MY  +G+GLAA QI V   + V 
Sbjct: 47  IRRITVVGEPVLHRPCKKITEFGTAELAALIDDMFTTMYGAEGVGLAANQIDVDAAVFVY 106

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +              EGCLS+P    +V R     VR  D +
Sbjct: 107 DCTDEDGVRHVGHLVNPVLEEAPPAERRLVKGDEGCLSVPGAYMEVARLEHAAVRGQDQH 166

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +   G  A CLQHE DHL G L++D LS   R    ++M +  + 
Sbjct: 167 GAPLRLEGTGYFARCLQHETDHLYGSLYLDRLSSRGRKKALREMEERTEE 216


>gi|323705507|ref|ZP_08117082.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535409|gb|EGB25185.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 158

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPIL + ++ ++KI+  ++ ++D+M E MY+ DG+GLAA QIG+L RLVV
Sbjct: 1   MALRYIRKIGDPILYKKAKYVDKIDDHVIMILDDMAETMYNADGVGLAANQIGILRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP+II   +   + +EGCLS+P+   +VKR   + VRY D   +
Sbjct: 61  VDVGD-----GLIELINPEII-LEEGEQIGKEGCLSVPNVTGEVKRPKKVRVRYQDRTGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           ++ +  +  LA  L HE+DHLNGILF++   R+  D   K
Sbjct: 115 YKELEGEDFLARALSHEIDHLNGILFVNKAIRIINDEEEK 154


>gi|313207141|ref|YP_004046318.1| peptide deformylase [Riemerella anatipestifer DSM 15868]
 gi|312446457|gb|ADQ82812.1| peptide deformylase [Riemerella anatipestifer DSM 15868]
 gi|315022461|gb|EFT35488.1| peptide deformylase [Riemerella anatipestifer RA-YM]
 gi|325335421|gb|ADZ11695.1| N-formylmethionyl-tRNA deformylase [Riemerella anatipestifer RA-GD]
          Length = 190

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 11/161 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + DP+LR+  + I     ++  LI NM E M    GIGLAA QIG+  RL ++
Sbjct: 1   MILPIRAYGDPVLRKKGQDITPDYPNLKELIQNMFETMEGAHGIGLAAPQIGLDIRLFIV 60

Query: 62  DLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D++  A  ++             VFIN KI+  + +   + EGCLSIP+ R DVKR   I
Sbjct: 61  DVRPLAEDEDYLDIADELKDFRKVFINAKILEETGEEWKFNEGCLSIPEVREDVKRKDTI 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           T+ Y D + +        + A  +QHE DH+ GILF D LS
Sbjct: 121 TIEYYDEDFKKHTETYSDIRARVIQHEYDHIEGILFTDKLS 161


>gi|124023604|ref|YP_001017911.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303]
 gi|123963890|gb|ABM78646.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT
           9303]
          Length = 181

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K ++   +P LR+VS+ ++ ++++++ +LI ++ + + +  G GLAA QIG+  R+V
Sbjct: 1   MAVKEILRMGNPQLRQVSKVVDDVSAELIISLIKDLQDTVKAHQGAGLAAPQIGIPLRVV 60

Query: 60  VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +        R          + INP +     D     EGCLS+P  R  V R + I  R
Sbjct: 61  LFGGGGPNPRYPEAPSIPQTLLINPVLTPIDSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ++ +        +G  A  +QHE DHL+G+LF D L        T ++  
Sbjct: 121 ALNEDGLEIEHCLEGFPARVIQHECDHLDGVLFTDRLVDSASFGFTGELEA 171


>gi|21222943|ref|NP_628722.1| polypetide deformylase [Streptomyces coelicolor A3(2)]
 gi|256785943|ref|ZP_05524374.1| polypetide deformylase [Streptomyces lividans TK24]
 gi|289769835|ref|ZP_06529213.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|8134401|sp|Q9XAQ2|DEF3_STRCO RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName:
           Full=Polypeptide deformylase 3
 gi|5042279|emb|CAB44533.1| putative polypetide deformylase [Streptomyces coelicolor A3(2)]
 gi|289700034|gb|EFD67463.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 208

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +    + +L R  R + +   D+  LID+M   MY  +G GLAA Q+GV  RL V 
Sbjct: 25  AVRRVTEVGEEVLHRPCRDVTEFGPDLAALIDDMFRTMYVAEGAGLAANQVGVDLRLFVY 84

Query: 62  DLQDHAHRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +              EGCLS+P     V R     VR +D +
Sbjct: 85  DCPDDEGVRHVGHLVNPVLDALDPAARRLLDEGEGCLSVPGAVMAVPRPDRAVVRGLDKD 144

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
               ++   G  A CL HE DH+NG +++D LS  +R    ++
Sbjct: 145 GVPLLVEGTGYFARCLAHETDHVNGHVYLDRLSGRERKAALRQ 187


>gi|116049053|ref|YP_792145.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390510|ref|ZP_06879985.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
 gi|313106089|ref|ZP_07792346.1| putative peptide deformylase [Pseudomonas aeruginosa 39016]
 gi|115584274|gb|ABJ10289.1| probable peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878848|gb|EFQ37442.1| putative peptide deformylase [Pseudomonas aeruginosa 39016]
          Length = 179

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R+++P+      + ++  LID+M E M+   G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAQPVPSELLGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +      +     P + +NP+I    D+     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D   Q      +G  A  +QHE DHL G L+   ++   +   T+ +
Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTEVL 169


>gi|78355060|ref|YP_386509.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217465|gb|ABB36814.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 169

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 1/166 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PD  L      IE+I  +I  L  +M E MY  DGIGLAA Q+G   RL+V+
Sbjct: 1   MIREILTYPDRRLAIECEEIEEITDEIRQLAADMAETMYDADGIGLAAPQVGATCRLIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R++   +INP++          +EGCLS+P  R+ V R+  + +   D +   
Sbjct: 61  DVSGPEAREDLRTYINPRLELLEGKVDT-EEGCLSVPALRSKVTRTEKVRLHATDLDGNA 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I ADGLL+ CLQHE+DHL+G LFID +SRLKR +   K+ K  +
Sbjct: 120 VCIDADGLLSICLQHEIDHLDGTLFIDKISRLKRSLYDNKVKKWQK 165


>gi|237753393|ref|ZP_04583873.1| polypeptide deformylase pdf formylmethioninedeformylase
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229375660|gb|EEO25751.1| polypeptide deformylase pdf formylmethioninedeformylase
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 168

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 103/166 (62%), Gaps = 4/166 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++ +P+P+LR++S+ +E  +  +  L+D M EVM + +G+G++A+Q+    R ++I + 
Sbjct: 3   EVITYPNPLLRQISKSVEVFDKGLHTLLDEMYEVMLAKNGVGISAIQVAKPIRALLICIP 62

Query: 65  DHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D     H+++ +  INPKII    +  ++ EGCLS+P++  ++KR++ I + Y D     
Sbjct: 63  DEDGNQHKEDLLEVINPKIIERDGEI-LFNEGCLSVPEFYEEIKRASNIKIAYQDRYGNP 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Q I A   LA   QHE+DHLNG+LFID LS +KR    K++ +  +
Sbjct: 122 QEIVAQDYLAVAFQHEIDHLNGVLFIDKLSIVKRKKFEKELKQRQK 167


>gi|118470670|ref|YP_885236.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155]
 gi|158512462|sp|A0QQP8|DEF_MYCS2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|118171957|gb|ABK72853.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155]
          Length = 197

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 12/176 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+       +  D+  LI +M + M + +G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTEPVPVGPDGSLPDDLPALIQDMFDTMDAANGVGLAANQIGVA 60

Query: 56  YRLVVIDLQDHAHR--KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D      +  +   V INP + T        D    +EGCLS+P       R+ 
Sbjct: 61  KRLFVYDCAPTRGQTTRRRGVVINPVLETSEVPETMPDPDEDEEGCLSVPGENFPTGRAD 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  V  +D +     +  + L A  LQHE  HL+G L++D L         K + +
Sbjct: 121 WARVTGLDADGSPITLEGEDLFARMLQHETGHLDGFLYLDRLVGRYARAAKKAVKR 176


>gi|91792258|ref|YP_561909.1| peptide deformylase [Shewanella denitrificans OS217]
 gi|91714260|gb|ABE54186.1| Peptide deformylase [Shewanella denitrificans OS217]
          Length = 167

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  P+  L+  ++ +  I   + +LID+ML+ +Y T DGIGLAA Q+G    ++
Sbjct: 1   MAVLDILKAPNEKLKVTAKKVSNI-EQVQSLIDDMLDTLYHTEDGIGLAATQVGRNEAII 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +ID+ +   R +P++ INP++I    +    QEGCLS+P Y ADV+R + + V  +D + 
Sbjct: 60  IIDISET--RDSPLILINPEVIE-GTNIEKGQEGCLSVPGYYADVERFSRVKVTGLDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              II  D  LA  LQHE+DHL G+LFID+LS LK+ M
Sbjct: 117 NEVIIDNDDFLAIVLQHEIDHLKGVLFIDYLSPLKQSM 154


>gi|146276206|ref|YP_001166365.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554447|gb|ABP69060.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 163

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 1/147 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +PDP L +   P       +  L  +ML  MY   G GLAA Q+G + RL V
Sbjct: 1   MAVRPILRWPDPRLSQPCAPAVP-GPALEELASDMLATMYHAQGRGLAAPQVGEMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  S +     EGCLSI   R  V R+  I +R+      
Sbjct: 60  MDTVWKDGPAEPQVFVNPEILWMSGERVEGPEGCLSIAGPRLTVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
            Q     G  A C QHE+DHL+GI+ +
Sbjct: 120 EQEALLSGFAAICAQHEIDHLDGIVIL 146


>gi|291530592|emb|CBK96177.1| peptide deformylase [Eubacterium siraeum 70/3]
 gi|291557816|emb|CBL34933.1| peptide deformylase [Eubacterium siraeum V10Sc8a]
          Length = 160

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ +    D  LR+  + +   +  +  ++D+M E M   +G+GLAA QI VL R+VV
Sbjct: 1   MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +      INP I +         EGCLS+P     V R A + V+  D   +
Sbjct: 61  IDVGDEHGKIE---LINPVITSMKGKQHEL-EGCLSVPGMWGYVDRPAKVKVKAQDRYGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  L HE+DHL+GILF D    L      ++  K
Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADELLTSEQLEERKK 160


>gi|33862657|ref|NP_894217.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313]
 gi|39931000|sp|Q7V8G6|DEF1_PROMM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|33634573|emb|CAE20559.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT
           9313]
          Length = 192

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  K ++   +P LR+VS  ++  + +++ +LI ++ + + +  G GLAA QIGV  R+V
Sbjct: 1   MAVKEILRMGNPQLRKVSNVVDDASDELIISLIKDLQDTVKAHQGAGLAAPQIGVPLRVV 60

Query: 60  VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +        R          + INP +     D     EGCLS+P  R  V R + I  R
Sbjct: 61  LFGGGGPNPRYPEAPSIPQTLLINPVLTPIGSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            ++ +        +G  A  +QHE DHL+G+LF D L        T ++ 
Sbjct: 121 ALNEDGFEVEHCLEGFPARVIQHECDHLDGVLFPDRLVDSASFGFTGELE 170


>gi|148266395|ref|YP_001233101.1| peptide deformylase [Geobacter uraniireducens Rf4]
 gi|146399895|gb|ABQ28528.1| peptide deformylase [Geobacter uraniireducens Rf4]
          Length = 168

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 103/169 (60%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  + ++++P PIL+++  P+  I+  I  L+ ++L+ M++  G +G+AA QIGV  R+ 
Sbjct: 1   MPVQKILLYPHPILKKMCHPVAAIDRSITGLLQDLLDTMHAGPGSVGVAAPQIGVTLRVC 60

Query: 60  VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+        +    +  INP+I       ++ +EGC+S+PDY  DV+R+  IT+R+M
Sbjct: 61  VVDVSASRNGKENNHGLLQMINPEITKRQGA-AIMREGCMSVPDYTGDVERATEITIRFM 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D +  H  I A G  A  +QHE+DHL+G+LF+D ++ LK  +  +K  K
Sbjct: 120 DGDGIHHEIEASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKSYK 168


>gi|313683649|ref|YP_004061387.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994]
 gi|313156509|gb|ADR35187.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994]
          Length = 171

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 100/171 (58%), Gaps = 4/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +P+  L+  S+ +   +  +   +D+M E M +++GIGLAA+Q+    R++++
Sbjct: 1   MLLPIITYPNKQLKARSQTVVNFDELLHRFLDDMYETMIASNGIGLAAIQVANPIRVLIL 60

Query: 62  DLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            + D     H++N +  INP I     +  +YQEGCLS+P +  DV+R   ++++Y + +
Sbjct: 61  CIPDEEGNQHKENLLEIINPVIHNPKGN-VLYQEGCLSVPGFYEDVERYETLSLKYQNRH 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   ++A  LLA  +QHE+DHL G LFI+ L+  +R    K+  K  + +
Sbjct: 120 GEACELHASDLLAIAIQHEIDHLEGKLFIEKLTYNRRKKFEKEYKKAQKEK 170


>gi|297181739|gb|ADI17920.1| N-formylmethionyl-tRNA deformylase [uncultured Desulfobacterales
           bacterium HF0200_07G10]
          Length = 174

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M    ++++PD  L +VSRP+++ + DI   + ++ E   S  G +G+AA Q+G   R++
Sbjct: 1   MAVLDILVYPDKRLTQVSRPVDEFSRDIKTFVKDLEETFRSYPGCVGIAAPQVGRFERII 60

Query: 60  VIDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++D+       N   +V INPKI ++  + S+ +EGCLS+PDY   V+R+  I +  ++ 
Sbjct: 61  LVDVSQKPQHVNHGFLVLINPKITSYEGN-SLGREGCLSVPDYTGKVERAKSIALEALNE 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           N   Q +   G  A  +QHE+DHL+G LFID L   +R+ + K++     L++
Sbjct: 120 NGDKQELKLSGYEARAVQHEIDHLDGKLFIDRLVG-RRNSLNKRIELSTDLKN 171


>gi|294786951|ref|ZP_06752205.1| peptide deformylase [Parascardovia denticolens F0305]
 gi|294485784|gb|EFG33418.1| peptide deformylase [Parascardovia denticolens F0305]
          Length = 163

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR V  PI  I   + NL+ ++L+ +      GL+A QIGV  R   
Sbjct: 1   MTIRDIRIVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NPKI+  S +     EGCLS+P      +R+ +  V  +D + +
Sbjct: 61  YNIDGKVGY-----VLNPKIVARSGE-QYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++   G++   LQHE DHL+G +++D L + +R    + M +  +
Sbjct: 115 KIVLEGKGIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRRQQK 161


>gi|91205496|ref|YP_537851.1| polypeptide deformylase [Rickettsia bellii RML369-C]
 gi|157827211|ref|YP_001496275.1| polypeptide deformylase [Rickettsia bellii OSU 85-389]
 gi|91069040|gb|ABE04762.1| Polypeptide deformylase [Rickettsia bellii RML369-C]
 gi|157802515|gb|ABV79238.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389]
          Length = 183

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 101/163 (61%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++    IE ++ +I  +ID ML  M     +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQGELIEVVDDNIRTIIDKMLNTMQIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ +P++FINP+I  FS D   + E  LS P   A + RS  I + Y+D +   Q + 
Sbjct: 70  N-NKSSPIIFINPEITYFSSDKQTFMERSLSFPGIEAPITRSKAIKINYLDYHGNKQELE 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           A   LAT +QHE+D+LNG +F+DHLS+LKRD + KKM K +++
Sbjct: 129 AQDFLATVIQHEVDYLNGKVFLDHLSKLKRDTLLKKMLKYIKM 171


>gi|293977820|ref|YP_003543250.1| peptide deformylase [Candidatus Sulcia muelleri DMIN]
 gi|292667751|gb|ADE35386.1| peptide deformylase [Candidatus Sulcia muelleri DMIN]
          Length = 189

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 9/176 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++I+ +  LR+    I+K   DI  LI+NM + MY   GIGL+A QIG+  RL +I
Sbjct: 1   MILPIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +  +   +K   VFINP II       + +EGCLSIP+   ++KR   I + Y D N + 
Sbjct: 61  EYNNFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKK 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168
              + +G L+  +QHE DH+ G LFID++  LK  +I K         K+ KL +L
Sbjct: 121 YKQHFNGFLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 176


>gi|308235005|ref|ZP_07665742.1| peptide deformylase [Gardnerella vaginalis ATCC 14018]
 gi|311114690|ref|YP_003985911.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
 gi|310946184|gb|ADP38888.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
          Length = 162

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR    PI +I   + NL++++LE +      GL+A QIG+  R   
Sbjct: 1   MTIRQIRIVPDPVLRTPCDPIREITPAVRNLVEDLLETVNDPGRAGLSANQIGISLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +++ H         +NP I   S +     EGCLS+P      +R+ +   + +D + +
Sbjct: 61  YNIEGHIGY-----ILNPVIEELSGE-QYGDEGCLSVPRLWYKTRRADYARAKGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++   GL+A  +QHE DHL+G +++D L +  R    +++ 
Sbjct: 115 TIVLEGKGLMARMIQHECDHLDGHVYLDRLEKDVRKQALRQLR 157


>gi|303271927|ref|XP_003055325.1| peptide deformylase [Micromonas pusilla CCMP1545]
 gi|226463299|gb|EEH60577.1| peptide deformylase [Micromonas pusilla CCMP1545]
          Length = 210

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/146 (36%), Positives = 84/146 (57%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +  +P   LR  ++ I   ++++  L D M   MY +DG+GLAA Q+GV YRL+V +  
Sbjct: 38  EIQKYPSAKLRDENKKIGVFDAELKKLADAMFAKMYESDGVGLAAPQVGVNYRLMVYNEA 97

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               +   +V +NPKI+ FS +  +++EGCLS P   ADV+R   +T+   + N +   +
Sbjct: 98  GERGKGAEVVMVNPKIVKFSKEKDMFEEGCLSFPAIYADVERPTAVTIEAQNVNGKKFKM 157

Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150
             DG  A   QHE DHL+G+LF D +
Sbjct: 158 TLDGFQARVFQHEYDHLDGVLFHDRM 183


>gi|84500578|ref|ZP_00998827.1| peptide deformylase [Oceanicola batsensis HTCC2597]
 gi|84391531|gb|EAQ03863.1| peptide deformylase [Oceanicola batsensis HTCC2597]
          Length = 165

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +PD  LR  +  +  +   +     +M++ M +  G+GLAAVQIGV+ RL V
Sbjct: 1   MAVRPILRWPDRRLRAAAADVVDVTDAVRATWADMIDTMEAMPGVGLAAVQIGVMQRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+++  S +   ++E    +P   A + R   +TVR+++    
Sbjct: 61  VDAS--GERGQAVRMANPEVLHASVEPRDHEEASPCLPGVSARITRPRAVTVRFLNAEGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +     GL AT +QH++DHL G ++ D LS++KRDM+ ++  K
Sbjct: 119 VEERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARK 162


>gi|229817674|ref|ZP_04447956.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM
           20098]
 gi|229785463|gb|EEP21577.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM
           20098]
          Length = 160

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I++I   +  L+D++L+ +      GL+A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLQTVDDPGRAGLSANQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP I   S +     EGCLS+P      +R+ +  VR +D + +
Sbjct: 61  YNIDGKIGY-----ILNPVIEEKSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             ++   GL    LQHE DHL+G +++D L + +R    + M   
Sbjct: 115 EIVLEGHGLFGRMLQHECDHLDGHVYLDRLEKEERREAMRYMRNH 159


>gi|38234602|ref|NP_940369.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200866|emb|CAE50571.1| peptide deformylase [Corynebacterium diphtheriae]
          Length = 187

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 7/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P+VI  DP+L   + P+    +++ +LI +M E M +  G+GLAA Q+GV  RL V 
Sbjct: 1   MIRPIVICGDPVLHNPTAPVSDP-AEVQDLIADMYETMEAARGVGLAANQVGVGLRLFVF 59

Query: 62  DLQDHAHRKNPMVFINPKIITFS------DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +  D     +    INP + T         D     EGCLS+P       R+ +  V  +
Sbjct: 60  NCPDDEGHFHRGCVINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWARVTGL 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           + +    +    G LA C QHE+ HL+G L+ D L    +    K + +
Sbjct: 120 EADGTPVVYEGTGFLARCFQHEVGHLDGFLYTDTLIGRWKRQAKKAIKR 168


>gi|121604720|ref|YP_982049.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
 gi|120593689|gb|ABM37128.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
          Length = 179

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 7/160 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   D  L RV++P+   +  ++  L+ +M   M S DG GLAA QIGV  ++V
Sbjct: 1   MTIREILKMGDARLLRVAKPVTAFDTDELHVLVSDMFYTMQSVDGAGLAAPQIGVDLQVV 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      V +NP I   S D     EGCLS+P  R  V R + I   
Sbjct: 61  IFGSDQLNPRYPAAPVVPRTVLVNPVITPLSADEESDWEGCLSVPGLRGMVPRFSHIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             D          DG  A  +QHE DHL G L+   +  L
Sbjct: 121 GFDQYGDPIDRTVDGFHARVVQHECDHLIGKLYPMRIRDL 160


>gi|75911263|ref|YP_325559.1| formylmethionine deformylase [Anabaena variabilis ATCC 29413]
 gi|75704988|gb|ABA24664.1| Formylmethionine deformylase [Anabaena variabilis ATCC 29413]
          Length = 179

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++   +P LR+ +  +E I ++ I  LID+++  +   +G+G+A+ Q+   YRL ++  
Sbjct: 7   PIIQLGNPTLRQKAAWVENIHDAAIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIVAS 66

Query: 64  QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +    +     P   INPKI+  S +     EGCLS+P  R  V R   I V Y D  
Sbjct: 67  RPNPRYPHAPVMEPTAMINPKIVGSSTEIVKGWEGCLSVPGIRGLVPRHQAIEVEYKDRY 126

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              Q       +A   QHE DHL+G+LFID +      +  ++  K+V
Sbjct: 127 GNLQKQTLTDFVARIFQHEFDHLDGVLFIDRVESNLNIITEEEYQKIV 174


>gi|182411922|ref|YP_001816988.1| peptide deformylase [Opitutus terrae PB90-1]
 gi|238692904|sp|B1ZMD5|DEF_OPITP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|177839136|gb|ACB73388.1| peptide deformylase [Opitutus terrae PB90-1]
          Length = 192

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 71/183 (38%), Positives = 96/183 (52%), Gaps = 16/183 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V + DP+LRR    I   +  +  L   ML  M    GIGLAA QIG   +L V
Sbjct: 1   MSLR-IVHYNDPVLRRKGEKITAFDKALSQLAKEMLATMQEAAGIGLAAQQIGRPVQLCV 59

Query: 61  IDLQ--------DHAHRKNPMVFINPKIITFSD-----DFSVY--QEGCLSIPDYRADVK 105
           +DL+        +    K P+  I P IIT  +     +  VY  +EGCLS P  R DV 
Sbjct: 60  VDLRRAEIDFTWELDGAKPPLDLIMPMIITNPEITPDRETDVYLVEEGCLSFPKIRGDVP 119

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           R   ITVRY D +     ++ DGLLA C+QHE+DHLNG+LFID + +  R  I   +  L
Sbjct: 120 RPDAITVRYQDEHGTPHTLHCDGLLARCIQHEVDHLNGVLFIDRMEKKTRAAIDADVKTL 179

Query: 166 VQL 168
            ++
Sbjct: 180 AKI 182


>gi|15639744|ref|NP_219194.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025982|ref|YP_001933754.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
 gi|6014952|sp|O83738|DEF_TREPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238689341|sp|B2S3Z6|DEF_TREPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|3323063|gb|AAC65724.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018557|gb|ACD71175.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
 gi|291060119|gb|ADD72854.1| peptide deformylase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 162

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 5/157 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
             +P L  VS P+ +++  +   I  M  VM    G+GLAA Q+G   R+ V+D++    
Sbjct: 6   LGEPCLTTVSEPVSEVDEQLRAFISGMFRVMRGAGGVGLAAPQVGRTVRVFVVDVE---- 61

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
             +   FINP+I   S++ S Y+EGCLSIP     V R   ++V+Y+D N +   + ADG
Sbjct: 62  -HHVRAFINPQITAASEEQSSYEEGCLSIPHIYERVLRPRRVSVQYLDENGKRCAVDADG 120

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +LA  +QHE DHL+GILF+D +   +RD   ++ + L
Sbjct: 121 ILARVIQHEYDHLDGILFLDRIDEKRRDDALRRYAAL 157


>gi|154497980|ref|ZP_02036358.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC
           29799]
 gi|150272970|gb|EDN00127.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC
           29799]
          Length = 175

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 5/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   DP+L + +  +   +  +  L+D+M+E +  + G+GLAA QIG+L R+VV
Sbjct: 12  MALRTIITKGDPVLSKKAHLVTNFDEKLAILLDDMVETLRDSGGVGLAAPQIGILRRVVV 71

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +           +  +NP+II    +  V  EGCLS+P     V R     V+  +   +
Sbjct: 72  V----INDEDQVIELVNPEIIATEGE-QVGFEGCLSVPGRWGKVARPMKARVKAQNRQGE 126

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +  +GL A C  HELDHL+G LF +   +L
Sbjct: 127 WFEVEDEGLTARCFCHELDHLDGHLFTELTDKL 159


>gi|326329902|ref|ZP_08196217.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
 gi|325952293|gb|EGD44318.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
          Length = 204

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 3/168 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +P+  +  P++ R  + +E  +  +  L  +M+  MY+ +G+GLAA QIG    + V D
Sbjct: 24  VRPITRWGTPVMHRPKKQVEVFDDALTELAADMVATMYAAEGVGLAADQIGEDVAIFVFD 83

Query: 63  LQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             D   R+   V  NP +     D     V  EGCLS P    D  R  +  V  +  + 
Sbjct: 84  CPDATGRRTVGVVCNPVLTLPEGDDRHLDVDLEGCLSFPGAFVDCGRPDWAAVDGLGLDG 143

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Q      +GLLA CLQHE DH NG +F D +S   R  +TK+  ++ Q
Sbjct: 144 QPVHFEGNGLLARCLQHETDHTNGTVFGDRISAKARKKLTKEHDRVAQ 191


>gi|255323209|ref|ZP_05364344.1| peptide deformylase [Campylobacter showae RM3277]
 gi|255299732|gb|EET79014.1| peptide deformylase [Campylobacter showae RM3277]
          Length = 170

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 100/167 (59%), Gaps = 5/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L   S  ++  + ++   +D+M E M + +GIGLAA+Q G   R+++I
Sbjct: 1   MILEILTYPNKKLFVKSLEVKAFDENLHKFLDDMYETMIAKNGIGLAAIQTGEAKRILII 60

Query: 62  DLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +L D       +++ +  INPKI+    +  +YQEGCLS+P Y  DVKR+ FIT+ Y D 
Sbjct: 61  NLVDEESKEQRKEDLLEIINPKILRKEGEI-IYQEGCLSVPGYYEDVKRAEFITLEYQDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             + + + ADGLL+  +QHE+DHL+G LFI+ +   KR    K+  K
Sbjct: 120 FGERKELEADGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKK 166


>gi|205373320|ref|ZP_03226124.1| peptide deformylase [Bacillus coahuilensis m4-4]
          Length = 161

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  P+ +L +  + +   +  +  L+DNM + M   DG+GLAA QIG    + +
Sbjct: 1   MPVLPIVFHPNEVLEKECKRVTIFDKKLRKLLDNMYDTMIEADGVGLAAPQIGQDISVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D +        +NP+I+  +       EGCLS P+    + R A++ V+  D   +
Sbjct: 61  VDIGDDSGIIE---LVNPEILETNG-IETDIEGCLSFPNLYGTLTRPAYVKVKAQDRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A+G LA  +QHE+DHL+G+LF   + R
Sbjct: 117 AYTIEAEGFLARAIQHEIDHLHGVLFTSKVER 148


>gi|226361306|ref|YP_002779084.1| peptide deformylase [Rhodococcus opacus B4]
 gi|254767598|sp|C1B0D9|DEF_RHOOB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|226239791|dbj|BAH50139.1| peptide deformylase [Rhodococcus opacus B4]
          Length = 196

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 9/173 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +  + +  +++  LI +M + M + +G+GLAA Q+G+  RL V
Sbjct: 1   MAILPIRIVGDPVLHEPTETVSESPAELSELIADMYDTMDAANGVGLAANQVGIPLRLFV 60

Query: 61  IDLQDHAHRKNPM----VFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFIT 111
            D  D      P       +NP + T        D     EGCLS+P  +    R+ +  
Sbjct: 61  YDCPDVDETGKPFRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGRAEWAK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           V   D +     I      A  LQHE+ HL+G L++D L         K + +
Sbjct: 121 VTGTDADGNAVEIEGRDFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKR 173


>gi|325068970|ref|ZP_08127643.1| peptide deformylase [Actinomyces oris K20]
 gi|326773171|ref|ZP_08232454.1| peptide deformylase [Actinomyces viscosus C505]
 gi|326636401|gb|EGE37304.1| peptide deformylase [Actinomyces viscosus C505]
          Length = 163

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DPILR     I  I+  +  L++++LE +      GLAA QIG+  R   
Sbjct: 1   MAYRDIRIIGDPILRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NPKI+  S D++    EGCLS+P      +R+ +     +D + 
Sbjct: 61  WNIDGEIGY-----ILNPKIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  ++  + L+A C+QHE DHL G L++D L R  R    K++  
Sbjct: 116 KEVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAKAMKELRA 160


>gi|223040084|ref|ZP_03610365.1| peptide deformylase [Campylobacter rectus RM3267]
 gi|222878670|gb|EEF13770.1| peptide deformylase [Campylobacter rectus RM3267]
          Length = 170

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 100/167 (59%), Gaps = 5/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+  L   S  ++  + ++   +D+M E M + +GIGLAA+Q G   R++++
Sbjct: 1   MILEILTYPNKKLFVKSLEVKVFDEELHKFLDDMYETMIAKNGIGLAAIQTGEAKRILIV 60

Query: 62  DLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +L D       +++ +  INPKI+    +  +YQEGCLS+P Y  DVKR+ FIT+ Y D 
Sbjct: 61  NLFDEESKEQRKEDLLEIINPKILRKEGEI-IYQEGCLSVPGYYEDVKRAEFITLEYQDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             Q + + A+GLL+  +QHE+DHL+G LFI+ +   KR    K+  K
Sbjct: 120 FGQRRELEAEGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKK 166


>gi|270692640|ref|ZP_06222945.1| peptide deformylase [Haemophilus influenzae HK1212]
 gi|270316024|gb|EFA28060.1| peptide deformylase [Haemophilus influenzae HK1212]
          Length = 132

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 62/134 (46%), Positives = 89/134 (66%), Gaps = 3/134 (2%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M + MY   GIGLAA Q+ +L R++ ID++    ++N  V INP+I+    +  + +EGC
Sbjct: 1   MFDTMYQEKGIGLAAPQVDILQRIITIDVE--GDKQNQFVLINPEILASEGETGI-EEGC 57

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           LSIP +RA V R   +TVR +D + +   + ADGLLA C+QHE+DHLNGILF+D+LS LK
Sbjct: 58  LSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 117

Query: 155 RDMITKKMSKLVQL 168
           R  I +K+ K  + 
Sbjct: 118 RQRIKEKLLKYKKQ 131


>gi|58176979|pdb|1V3Y|A Chain A, The Crystal Structure Of Peptide Deformylase From Thermus
           Thermophilus Hb8
 gi|58176980|pdb|1V3Y|B Chain B, The Crystal Structure Of Peptide Deformylase From Thermus
           Thermophilus Hb8
          Length = 192

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 14/171 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           +  P+ ++ DP+LRR +RP+E   S I  L ++MLE M+   G+GLAA QIG+  RL V 
Sbjct: 1   MVYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVA 59

Query: 61  --IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAF 109
                +     + P+        V  NP I T+ +      EG LS+P  Y  +V R+  
Sbjct: 60  VEYADEPEGEEERPLRELVRRVYVVANPVI-TYREGLVEGTEGXLSLPGLYSEEVPRAER 118

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           I V Y D   + +++  +G +A   QHE+DHL+GILF + L + KR+   +
Sbjct: 119 IRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLE 169


>gi|111222219|ref|YP_713013.1| peptide deformylase 2 [Frankia alni ACN14a]
 gi|111149751|emb|CAJ61443.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [Frankia
           alni ACN14a]
          Length = 190

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 5/165 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+    DP+LR  +  +   ++ +  L+ +M++ MY   G+GLAA QIGV  R+ V D+ 
Sbjct: 3   PIRTVGDPVLRTPTALVTTFDAALARLVHDMIDTMYDAPGVGLAAPQIGVGLRVFVFDVG 62

Query: 65  DHAHRKNPMVFINPKI-----ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                          +     +    +    QEGCLS+P       R+   +VR +D   
Sbjct: 63  YDPRDVTVPRVPRVVVNPVLELAADGEQQEGQEGCLSVPGLHFSTTRALRASVRGVDVTG 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                  +GLLA C QHE+DHL+G L++D L+  +R    + + +
Sbjct: 123 AAVEYAGEGLLARCFQHEVDHLDGTLYLDRLTGEERRAAVQALRE 167


>gi|320533868|ref|ZP_08034450.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133894|gb|EFW26260.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 175

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+LR     I  I+  +  L++++LE +      GLAA QIG+  R   
Sbjct: 13  MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NP+I+  S D++    EGCLS+P      +R+ +     +D + 
Sbjct: 73  WNIDGEIGY-----ILNPRIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDG 127

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  ++  + L+A C+QHE DHL G L++D L R  R    K++  
Sbjct: 128 REVVVEGEELMARCIQHECDHLEGRLYLDRLDRKNRAKAMKELRA 172


>gi|186476100|ref|YP_001857570.1| peptide deformylase [Burkholderia phymatum STM815]
 gi|184192559|gb|ACC70524.1| peptide deformylase [Burkholderia phymatum STM815]
          Length = 177

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L R+++P++  +  ++  L+ +M E M+  +G GLAA QIGV  ++V+
Sbjct: 1   MIHEILKMGDPRLLRIAKPVDHFDTPELHELVRDMFETMHDANGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGHNERYPDAPSVPETVLINPTITPVSLDTEEGWEGCLSVPGLRGAVSRLSMIRYHGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +     A+G  A  +QHE DHL G L+   ++   +   T+ +
Sbjct: 121 DQFGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAKFGFTEVL 167


>gi|297538577|ref|YP_003674346.1| peptide deformylase [Methylotenera sp. 301]
 gi|297257924|gb|ADI29769.1| peptide deformylase [Methylotenera sp. 301]
          Length = 182

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   +P L   + P+EK +  ++ +LI ++ + M + +G G+AA QIG   R+V
Sbjct: 1   MAVKPVLRMGEPCLLLKAAPVEKFDTPELHSLIQDLEDTMQAMNGAGIAAPQIGESLRVV 60

Query: 60  VIDLQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +   +     KNP           V INP I    DD     EGCLS+P  R  V R   
Sbjct: 61  IFGQKSSDENKNPRYPDADAVPYTVLINPVITPIGDDVEDGWEGCLSVPGMRGIVPRYLR 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           +     D           G  A  +QHE DHL+G+L+   +  LK
Sbjct: 121 LHYAGFDQYGNPIDRLVSGFHARVVQHECDHLDGVLYPMRIKNLK 165


>gi|33864860|ref|NP_896419.1| peptide deformylase [Synechococcus sp. WH 8102]
 gi|39930836|sp|Q7U9D4|DEF_SYNPX RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33632383|emb|CAE06839.1| putative formylmethionine deformylase [Synechococcus sp. WH 8102]
          Length = 201

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 2/159 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +      +LR+ +R I K+      L  +ML  MY+  GIGLAA Q+G+  +L+VIDL 
Sbjct: 32  EIHTLGAEVLRQSARRIGKVTEQTRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDLD 91

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+V INP+I   S     Y+EGCLSIP    DV R   I + + D   + + +
Sbjct: 92  LENAATPPLVLINPEISAASASIDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKM 151

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            ADGL+A C+QHE+DHLNG+LF+D ++      + K++ 
Sbjct: 152 KADGLMARCIQHEMDHLNGVLFVDRVTDEA--GLQKELK 188


>gi|158336649|ref|YP_001517823.1| peptide deformylase [Acaryochloris marina MBIC11017]
 gi|158306890|gb|ABW28507.1| peptide deformylase [Acaryochloris marina MBIC11017]
          Length = 176

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 6/171 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +++ ++   +P LR+ + P++     +I +LID+++  M  ++G+G+AA Q+G+  ++V+
Sbjct: 4   MQREVLQLGNPKLRQTACPVQNPTDLEIQSLIDDLIGTMEESNGVGIAAPQVGIDLQVVI 63

Query: 61  IDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +  +      HA   +P+  INP I     +     EGCLS+P  R  V R++ I+V Y 
Sbjct: 64  VASRPTLRYPHAPHMDPIAMINPHITPIGAERVKDWEGCLSVPGIRGLVPRASTISVEYQ 123

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           D N Q Q       +A  +QHE DHL G +FID +   +  +   +  KLV
Sbjct: 124 DRNGQAQTEIFQDFVARIIQHECDHLQGYVFIDRVESTRELITENEYHKLV 174


>gi|237654289|ref|YP_002890603.1| peptide deformylase [Thauera sp. MZ1T]
 gi|237625536|gb|ACR02226.1| peptide deformylase [Thauera sp. MZ1T]
          Length = 174

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + L+   D  L + + P+ +     +  LI+++ + M +  G+GLAA QIGV  ++V
Sbjct: 1   MAVRTLLRMGDARLLQPAAPVGEFGTPALAALIEDLFDTMAAHGGVGLAAPQIGVGLQVV 60

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +   +      +       + +NP I+  +++     EGCLS+P  R  V R+  I    
Sbjct: 61  IFGFERSERYPDAAPVPRTILLNPVIVPLTEEREEGWEGCLSVPGLRGMVPRATRIRYTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
                +    +A+G  A  +QHE DHL G+L+   +   +R   T
Sbjct: 121 YTPAGEPIERFAEGFHARVVQHECDHLAGVLYPMRVRDFRRFGFT 165


>gi|325290451|ref|YP_004266632.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965852|gb|ADY56631.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 150

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   + ILR  ++ ++KI  +I+ L++N+ + +Y++ G+GLAA QIG+  R+ V
Sbjct: 1   MAVYQIVKMGEDILREKAQEVKKITPNILKLLENLTDTLYASQGVGLAAPQIGISKRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D          INP II    +  + +EGCLSIP  + +VKRSA + V+  D    
Sbjct: 61  VDIGD-----GLFELINPVIIERYGE-EIDKEGCLSIPGIQGEVKRSAKVVVQCQDREGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                 +G LA   QHE+DHL+G+LF+D    + +
Sbjct: 115 LVQYAGEGFLARAFQHEIDHLDGVLFVDLAPEVYK 149


>gi|311068093|ref|YP_003973016.1| peptide deformylase [Bacillus atrophaeus 1942]
 gi|310868610|gb|ADP32085.1| peptide deformylase [Bacillus atrophaeus 1942]
          Length = 160

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKPIVTHPAEVLETPAEAVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R +    INP+I+  S       EGCLS PD   +V R  ++ V+  +   +
Sbjct: 61  VDIGEESGRID---LINPEILE-SGGKQTGIEGCLSFPDLYGEVTRPDYVKVQAYNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +  A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFVFEATGFLARAVQHEMDHLDGVLFTSKVSK 148


>gi|91775819|ref|YP_545575.1| peptide deformylase [Methylobacillus flagellatus KT]
 gi|91709806|gb|ABE49734.1| Peptide deformylase [Methylobacillus flagellatus KT]
          Length = 177

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   +P+L + + P+++ +  ++  LI +M + M   +G G+AA QIGV  R+V
Sbjct: 1   MPVKPVLKMGEPLLLQKAEPVQQFDTPELHALIKDMEDTMAHLNGAGIAAPQIGVSLRVV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +  +        A +    V +NP +    ++     EGCLS+P  R  V R   +    
Sbjct: 61  IFGVGHNPRYPDAEQVPYTVLVNPTLTPIGEELEDGWEGCLSVPGMRGIVPRYQRLHYTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            D           G  A  +QHE DHL+GIL+   +  L +   T
Sbjct: 121 YDQYGNPIDRLVSGFHARVVQHECDHLDGILYPMRIRDLAQFGFT 165


>gi|207723348|ref|YP_002253747.1| polypeptide deformylase (partial sequence) protein [Ralstonia
           solanacearum MolK2]
 gi|206588547|emb|CAQ35510.1| probable polypeptide deformylase (partial sequence) protein
           [Ralstonia solanacearum MolK2]
          Length = 181

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           V +P++   D  L RV++ +++    ++  LI++M + M +  G GLAA QIGV  ++V+
Sbjct: 5   VIRPILKMGDSRLLRVAQSVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 64

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +    +       V INP I   SD+     EGCLS+P  R  V R   +     
Sbjct: 65  FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGY 124

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D +       A+G  A  +QHE DHL GIL+   +    R   T+
Sbjct: 125 DQHGHAIDRVAEGFHARVVQHECDHLQGILYPMRVRDFTRFGFTE 169


>gi|121610540|ref|YP_998347.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
 gi|121555180|gb|ABM59329.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
          Length = 186

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   DP L R++RP+   +++ +  L+ +ML+ M+  +G GLAA QIGV  +LV
Sbjct: 1   MTIHRILKMGDPRLLRIARPVTGFDTEALHGLVRDMLDTMHDANGAGLAAPQIGVDLQLV 60

Query: 60  VIDLQDHAHR---KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V    +H  R   + P+   V +NP I     D     EGCLS+P  R  V R + I   
Sbjct: 61  VFGSGEHNPRYPGRPPVPLTVLLNPVITPLGQDEKEDWEGCLSVPGLRGMVPRWSRIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D          DG  A  +QHE DHL G L+   +   ++   T+ +
Sbjct: 121 GVDPYGHPIDRSVDGFHARVVQHECDHLVGKLYPMRVRDFRQFGFTQVL 169


>gi|113955292|ref|YP_731667.1| peptide deformylase [Synechococcus sp. CC9311]
 gi|122945537|sp|Q0I7A5|DEF_SYNS3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|113882643|gb|ABI47601.1| peptide deformylase [Synechococcus sp. CC9311]
          Length = 202

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 3/159 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +    D  LR  +R I K++  + +L  +ML  MY+  GIGLAA Q+GV  +L+VI
Sbjct: 29  APLDIHTLGDDALRGDARRIGKVDERVRDLARDMLRSMYTASGIGLAAPQVGVHQQLLVI 88

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL        P+V INP+I T S     Y+EGCLSIP    DV R   I + + D   + 
Sbjct: 89  DLDFETPSTPPLVLINPEITTCSASVDTYEEGCLSIPGVYLDVVRPTAIQLSFRDEMGRP 148

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRDM 157
           + + ADGL+A C+QHE+DHL G+LF+D ++    LK+++
Sbjct: 149 RTMKADGLMARCIQHEMDHLRGVLFVDRVTDAGGLKKEL 187


>gi|313672170|ref|YP_004050281.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938926|gb|ADR18118.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 168

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 101/168 (60%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + ++ +P+P L+ +S  + KI+  + ++I ++ + M      +G+AA QIG L R++
Sbjct: 1   MAIREVLTYPNPKLKEISEEVLKIDDYVRSVITDLKDTMEDAGHSVGIAAPQIGELIRVI 60

Query: 60  VIDLQDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           V+D   +        P V INP+II + +  + ++EGC+S+PDY  +V R+  I V+++D
Sbjct: 61  VVDPSKNPKCKEHHGPNVMINPEIIKW-EGLTQFREGCMSVPDYTGNVTRAEKILVQFLD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            N + ++   +G  A  +QHE+DHL+G+LFID +   + D+  +K  K
Sbjct: 120 ENGEQKVFETEGFEAILIQHEIDHLDGVLFIDRIISKRTDLFKRKNYK 167


>gi|331004325|ref|ZP_08327800.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411391|gb|EGG90806.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 169

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L +  + ++ +N     LI++M++ M   +G+GLAA QIGVL R+VV
Sbjct: 1   MAIRAIRVIGDSVLNKKCKEVKAVNDRTKVLIEDMIDTMREANGVGLAAPQIGVLKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+++     +N  V INP I+    +     EGCLS+P     VKR   + V+  D +  
Sbjct: 61  IEIEP----ENVYVLINPVILEQYGE-QEGYEGCLSVPGKSGIVKRPNHVKVKAFDIDMN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA  + HE  HL G L++D + 
Sbjct: 116 EYTLEGEGLLARAICHECAHLEGELYVDLVE 146


>gi|226940980|ref|YP_002796054.1| Peptide deformylase [Laribacter hongkongensis HLHK9]
 gi|226715907|gb|ACO75045.1| Peptide deformylase [Laribacter hongkongensis HLHK9]
          Length = 183

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 70/166 (42%), Gaps = 7/166 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L   + P+       +  L++++ E M    G GLAA QIG   ++V
Sbjct: 1   MSIRTVIKMGDPRLLLSAEPVTAFGTPQLTRLVEDLWETMKVHSGAGLAAPQIGENLQVV 60

Query: 60  VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V    +   R        P V INP +           EGCLS+P  R  V R A +  +
Sbjct: 61  VFGTGEPNPRYPDAGIVPPTVLINPIVTPLGASMEDGWEGCLSLPGLRGAVPRYASVRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D   Q      +G  A  +QHE DHL G L+   +  + R   T
Sbjct: 121 GFDLYGQPIDRTVEGFHARVVQHECDHLWGFLYPMRMKDMSRFGFT 166


>gi|89898499|ref|YP_515609.1| peptide deformylase [Chlamydophila felis Fe/C-56]
 gi|123722301|sp|Q253S4|DEF_CHLFF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|89331871|dbj|BAE81464.1| polypeptide deformylase [Chlamydophila felis Fe/C-56]
          Length = 186

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +   ILRR +  I +I   I  L+ +M E M +  G+GLAA Q+G    L V+
Sbjct: 1   MIRELEYYGSHILRRKADIIPEITDTIRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVV 60

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++      +      P V+INP +   S+D  + +EGCLSIP  RADV R   ITV  +
Sbjct: 61  CVEGETEDGDLIFCDFPKVYINPVLSNASEDLVIGREGCLSIPGLRADVYRPQSITVTAL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167
           + + Q    + +G  A  + HE DHL+G+L+ID +   K        + K+ +
Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLHGVLYIDKMEEPKDIKKFKASLEKIRR 173


>gi|237785573|ref|YP_002906278.1| peptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758485|gb|ACR17735.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 178

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + IF DP+L   +  +   +  +  L+D+M+E M    G GLAA Q+GVL R+ V
Sbjct: 1   MSLRRIRIFGDPVLTTPAEQVTDFDEPLGILVDDMMETMDHYRGAGLAANQVGVLRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +             +NP      D+     EGCLS+P   A+ +R   ++V     +  
Sbjct: 61  YNCGGRRG-----HIVNPVWKHEGDETQYGPEGCLSVPSIHANTRRWMNVSVTGQTVDGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                ADG+LA C+QHE DHL+G++++  L    R     ++ 
Sbjct: 116 PVSFSADGILARCIQHETDHLDGVMYMRRLEPEIRKETMAQIR 158


>gi|124516548|gb|EAY58056.1| Peptide deformylase [Leptospirillum rubarum]
 gi|206603377|gb|EDZ39857.1| Peptide deformylase [Leptospirillum sp. Group II '5-way CG']
          Length = 184

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 8/173 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +    +PILR+++ PI        +    +D+M+E M  +DG+GLAA Q+ V  +
Sbjct: 1   MALLKIAKMGNPILRKIAEPISPKEIETDEFQTFVDDMIETMRDSDGLGLAAPQVHVSKQ 60

Query: 58  LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +VVI     D    A     +V INP     S +     EGCLS+ + R  V RS  + +
Sbjct: 61  VVVIESMENDRYPDAPPIPLLVLINPVFKYMSKETRTGWEGCLSVDNLRGKVTRSRAVKM 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             +D +     +  +   A  LQHE DHL G LF+D +  +      ++  K 
Sbjct: 121 EALDRHGNTITLEWEDFPAVVLQHETDHLRGHLFLDRMKDMSTLTQLEEFQKF 173


>gi|319760357|ref|YP_004124295.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039071|gb|ADV33621.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF]
          Length = 168

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+ ++ + KI+     +I +M + MY+  GIGLAA Q+ +  +++V
Sbjct: 1   MSILKILHYPDKRLRKTAKFVSKISKHTKRIIFDMFDTMYAQQGIGLAATQVDIDQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL  + +    +VFINP II          EGCLSIP  +  + RS  I VR ++ +  
Sbjct: 61  IDL--YQNITQRLVFINPIIIKKIGIIHTV-EGCLSIPKIKESIPRSKQIIVRSLNQDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I A  LL+ C+QHE+DHL G LFID+LS LK   I KK+ K  +L
Sbjct: 118 IFEITATDLLSVCIQHEIDHLLGKLFIDYLSPLKIKRINKKIQKWTKL 165


>gi|269219486|ref|ZP_06163340.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211065|gb|EEZ77405.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 161

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR    PI++I   +  L+++++E +      GLAA QIGV  R   
Sbjct: 1   MTFRPIRIVGDPVLRTPCSPIDEITPGVKALVEDLVENVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +++           +NP I+  SD +F   +EGCLS+PD     KRS +      D + 
Sbjct: 61  WNIEGEIGY-----ILNPVIVELSDDEFQDGEEGCLSVPDLWFPTKRSLYARAEGTDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + +++  +GL+  C+QHE+DHL+G L+ID L R  R    + +  L
Sbjct: 116 RKKVVEGEGLMGRCIQHEVDHLDGHLYIDRLDRETRKKAMRAIRDL 161


>gi|261367360|ref|ZP_05980243.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
 gi|282570120|gb|EFB75655.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
          Length = 171

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 7/163 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL++V RP+ K +  +  L+D+M E + + +G+GLA  Q+G++ RL +
Sbjct: 1   MALRTIVQDGDPILKKVCRPVTKFDDRLRILLDDMKETLLAANGLGLAGPQVGMMRRLFI 60

Query: 61  IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
              +     + P       + FINP+I+  SD+     EGCLS P +   + RS  + V+
Sbjct: 61  CLDERDMPEEVPENYEYKFIEFINPEILELSDEKVELYEGCLSFPGHNGAISRSKHVKVK 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             D + +   + AD +LA C+QHE +HL+GI  +D  +    D
Sbjct: 121 AQDRHGEWFEMEADDMLARCIQHENNHLDGITIMDLATHFYED 163


>gi|156743414|ref|YP_001433543.1| peptide deformylase [Roseiflexus castenholzii DSM 13941]
 gi|254767599|sp|A7NPM9|DEF_ROSCS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|156234742|gb|ABU59525.1| peptide deformylase [Roseiflexus castenholzii DSM 13941]
          Length = 185

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 16/169 (9%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +P    IL     P+   N  +  L+ +M E M++ +G+GLAA QIGV  
Sbjct: 1   MGLRHILRIDNPDEKKILTTRCHPVRMPNPSLKQLVADMFETMHAANGVGLAAPQIGVTQ 60

Query: 57  RLVVIDLQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           RL VI +      +              V INP+I+  SD   V  EGCLS+P +  +V 
Sbjct: 61  RLAVIAIPPMMEERPDGTKVEVAPEQTFVLINPEIVKASDQEDVGLEGCLSLPGWYGEVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRL 153
           R+A++TV Y D N + Q I    GLLA  LQHE+DHL+G+LF + +  L
Sbjct: 121 RAAWVTVEYTDLNGRRQRIRRATGLLARALQHEIDHLDGVLFTERIRDL 169


>gi|167760430|ref|ZP_02432557.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704]
 gi|167661929|gb|EDS06059.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704]
          Length = 165

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +  + + KI      LI++ML+ MY   G+GLAA Q+GVL R+VV
Sbjct: 9   MATRKIREIGDEVLTKPCKEVTKITLRTKVLINDMLDTMYEALGVGLAAPQVGVLKRIVV 68

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+II  S +    +EGCLS+P     V R  ++ VR ++ + +
Sbjct: 69  IDVGE-----GPIVLINPEIIETSGE-QSGEEGCLSVPGKSGMVTRPDYVKVRALNEDME 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  +GLLA    HE+DHL+G +++D + 
Sbjct: 123 EIELEGEGLLARAFCHEIDHLDGRMYVDLVE 153


>gi|88859726|ref|ZP_01134366.1| peptide deformylase [Pseudoalteromonas tunicata D2]
 gi|88818743|gb|EAR28558.1| peptide deformylase [Pseudoalteromonas tunicata D2]
          Length = 168

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/171 (40%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M   P++   DP L   +  +  +   + +LID++L+ +Y+T +GIGLAA QIG    ++
Sbjct: 1   MAVLPILTAGDPFLAVPATAVTDV-KLVESLIDDLLDTLYATDNGIGLAATQIGRKEAVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL   A R  P+V INP +++   +    + GCLS+P YRADV R   + V  +D + 
Sbjct: 60  VIDLS--AERNQPLVLINPVVVSGEAEEKGEE-GCLSVPGYRADVVRYTHVVVEALDRSG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           Q   I +D  LA  +QHE+DHL G LFID+LS LKR++  KK+ K V+  +
Sbjct: 117 QAVRIDSDDFLAIVMQHEIDHLKGTLFIDYLSPLKRNIALKKVKKCVKEAN 167


>gi|154685988|ref|YP_001421149.1| peptide deformylase [Bacillus amyloliquefaciens FZB42]
 gi|154351839|gb|ABS73918.1| DefA [Bacillus amyloliquefaciens FZB42]
          Length = 160

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKIVTHPAEVLETPADEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R +    +NP I+  S +     EGCLS P    DV R  ++ V+  D   +
Sbjct: 61  VDIGEESGRID---LVNPVILEKSGE-QTGVEGCLSFPGVYGDVTRPDYVKVKAYDRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             I+ A+G LA  +QHE+DHL+GILF   ++    +    +M 
Sbjct: 117 PFILEAEGFLARAVQHEMDHLDGILFTSKITAYYTEEELAEME 159


>gi|281355873|ref|ZP_06242367.1| peptide deformylase [Victivallis vadensis ATCC BAA-548]
 gi|281318753|gb|EFB02773.1| peptide deformylase [Victivallis vadensis ATCC BAA-548]
          Length = 197

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 12/175 (6%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
              DP+L+  +RP+E +  +I  L  NM E +    G+G+AA Q+G   RLVV D+   +
Sbjct: 13  TAGDPVLKAKARPVEAVTPEIRELACNMQEALRVFSGVGIAAPQVGESLRLVVFDIPVDS 72

Query: 68  HRKNPMV------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +NP V             INP+I+  SD      EGCLS+PD  A V R A +  R  
Sbjct: 73  MGENPTVGEQLLLPRMPLTVINPEIVASSDVLCESDEGCLSVPDIWAPVVRPATVVFRAT 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             + +       GLL  C+QHELDHL+G+LF+D +S      I + + +L++  +
Sbjct: 133 TLDGEVIECECGGLLGRCIQHELDHLDGVLFVDRVSPEAARTIERDLKQLIRYGE 187


>gi|308173535|ref|YP_003920240.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7]
 gi|307606399|emb|CBI42770.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7]
 gi|328553532|gb|AEB24024.1| peptide deformylase [Bacillus amyloliquefaciens TA208]
 gi|328911676|gb|AEB63272.1| polypeptide deformylase [Bacillus amyloliquefaciens LL3]
          Length = 160

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKIVTHPAEVLETPAEEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R +    +NP I+  S +  +  EGCLS P    +V R  ++ V+  D   +
Sbjct: 61  VDIGEESGRID---LVNPVILEKSGE-QIGVEGCLSFPGVYGEVTRPDYVKVKAYDRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             I+ A+G LA  +QHE+DHL GILF   ++    +    +M 
Sbjct: 117 PFIVEAEGFLARAIQHEMDHLEGILFTSKITAYYTEEELAEME 159


>gi|319949867|ref|ZP_08023877.1| polypeptide deformylase [Dietzia cinnamea P4]
 gi|319436469|gb|EFV91579.1| polypeptide deformylase [Dietzia cinnamea P4]
          Length = 223

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 22/185 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP L   + P+ +   +I +L+ ++ + M + +G+GLAA QIGV  R+ V
Sbjct: 1   MAVRPIVILGDPALHAPTEPVTESPEEIADLVRDLYDTMDAANGVGLAANQIGVRKRVFV 60

Query: 61  IDLQDHAHRKNPMV-----------------FINP-----KIITFSDDFSVYQEGCLSIP 98
            D  D        V                  INP     +I     D     EGCLS+P
Sbjct: 61  YDCPDLDTEDGEGVSREEVEARGGWLNRRGCVINPVLETSEIPETMPDPEDDLEGCLSVP 120

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                  R+ +  V   D + +   +   GL A CLQHE+ HL+G ++ DHL    +   
Sbjct: 121 GVNFPRGRAWWARVTGTDEHGEPVSVEGYGLFARCLQHEVGHLDGFVYTDHLIGRNKKAA 180

Query: 159 TKKMS 163
            + + 
Sbjct: 181 KRHIR 185


>gi|256394158|ref|YP_003115722.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
 gi|256360384|gb|ACU73881.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
          Length = 225

 Score =  175 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 8   IFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +  + +L R  R + +   ++++ L+D+M   MY   G+GLAA Q+GV  R+ V D  D 
Sbjct: 39  VVGEEVLHRPCREVAEFGTAELLQLVDDMFLTMYVAQGVGLAANQVGVDLRVFVYDCVDD 98

Query: 67  AHRKNPMVFINPKIITFSDD----FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              ++    +NPK+    +         QEGCLS+P    ++ R     +  +D + +  
Sbjct: 99  DGARHVGHIVNPKLDRTPEGGQRRLVEAQEGCLSVPGPTRELPRYDHAVLHGVDVHGEPL 158

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           ++  +G  A CLQHE DHL G L+ID +++  R  + ++M+++ 
Sbjct: 159 VLEGEGYFARCLQHETDHLEGTLYIDRMNKKTRRGVLEEMAEVA 202


>gi|189218929|ref|YP_001939570.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum
           V4]
 gi|238692077|sp|B3DUG9|DEF_METI4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189185787|gb|ACD82972.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum
           V4]
          Length = 190

 Score =  175 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 15/182 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   LV++ +PILR+   PI+  +  +  L+ +MLE M    G+GLAA Q+G+  +L VI
Sbjct: 1   MILKLVLYDNPILRKKGMPIDSFDDRLKRLVQDMLETMAYYKGVGLAAQQVGLNLQLAVI 60

Query: 62  DL--------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           D+                      P+  INP + +++    +  EGCLS P  R DV RS
Sbjct: 61  DVSGSKLSSSLLIGGKPAMVEEHMPLFLINPTL-SYTQSKEISNEGCLSFPGLRIDVPRS 119

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + V+  D   +     A G L+  +QHE DHL G LFID+LS  ++  I +++ K+ +
Sbjct: 120 KRVKVKTFDLEGRPWYFEAGGFLSVAIQHEFDHLQGKLFIDYLSAEQKKAIKEELEKIKR 179

Query: 168 LR 169
             
Sbjct: 180 GE 181


>gi|169333675|ref|ZP_02860868.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259669|gb|EDS73635.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM
           17244]
          Length = 174

 Score =  175 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 12/172 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D ILR+ S+ ++KI    + LID+M E MY   G+GLAAVQ+GVL R+V 
Sbjct: 1   MALRTIRITGDEILRKTSKEVKKITPRTLELIDDMFETMYDAQGVGLAAVQVGVLRRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D      P+V INP+II  S++  +  EGCLS+P  +    R   + V+ +D +  
Sbjct: 61  IDVGD-----GPVVLINPEIIYKSEEEYLEAEGCLSVPGEQGYTYRPEEVRVKALDRDGN 115

Query: 121 HQIIY-ADGLLATCLQHELDHLNGILFIDH-LSRLKRDMITKKMSKLVQLRD 170
            +II   D   +  + HEL+HL+GIL+ D  ++  K     +++ ++++ R+
Sbjct: 116 ERIIESKDRFFSKAICHELEHLDGILYTDKTVTPTK-----EQIDEIIKQRE 162


>gi|84514540|ref|ZP_01001904.1| peptide deformylase [Loktanella vestfoldensis SKA53]
 gi|84511591|gb|EAQ08044.1| peptide deformylase [Loktanella vestfoldensis SKA53]
          Length = 152

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 1/148 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L    DP+LR V+ P+   + D+  L+  ML  MY+  G GLAA Q+GV  R+ V
Sbjct: 1   MAL-DLRFDGDPVLRAVAEPVTAFDEDLALLVAEMLATMYAAPGRGLAAPQVGVSQRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID        +P  F+NP+II  S   +   E CLSIPD    V R  ++ +R+ D    
Sbjct: 60  IDTTWKDGDPDPQAFVNPQIIARSKTTATAVEACLSIPDRAFAVTRPIWVDMRWQDIAGD 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            Q    DG+ A C+ HE DHL+G+L  D
Sbjct: 120 VQQGRFDGVAAICVCHEYDHLDGVLITD 147


>gi|328907667|gb|EGG27431.1| polypeptide deformylase [Propionibacterium sp. P08]
          Length = 200

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  + +P+L   +RPI + + D+  LI +M   M + DG+GLAA Q+GV   L V 
Sbjct: 20  ALRRVTRWGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVY 79

Query: 62  DLQDHAHRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              D  +  +   F NP +              EGCLS P     + R    T    D  
Sbjct: 80  ACPDADNVVHHGAFCNPVVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPW 139

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +   G  A CLQHE DH NG++F D LS+  R  + ++   +  L
Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQHDAVAHL 189


>gi|161833710|ref|YP_001597906.1| peptide deformylase [Candidatus Sulcia muelleri GWSS]
 gi|189083080|sp|A8Z5V9|DEF_SULMW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|152206200|gb|ABS30510.1| peptide deformylase [Candidatus Sulcia muelleri GWSS]
          Length = 189

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++I+ +  LR+    I+K   DI  LI+NM + MY   GIGL+A QIG+  RL +I
Sbjct: 1   MILPIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +  +   +K   VFINP II       + +EGCLSIP+   ++KR   I + Y D N + 
Sbjct: 61  EYNNFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKK 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168
              + +GLL+  +QHE DH+ G LFID++  LK  +I K         K+ KL +L
Sbjct: 121 YKQHFNGLLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 176


>gi|291532990|emb|CBL06103.1| peptide deformylase [Megamonas hypermegale ART12/1]
          Length = 168

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 6/154 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +    D +L++ ++PIE+I+  I  L+D+M E MY  +G+GLAA Q+G   ++VVI
Sbjct: 18  AILDIKKAGDLVLKQQAQPIERIDKTIRTLLDDMAETMYKANGVGLAAPQVGQSIQVVVI 77

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +       +  INP II   +   +  EGCLS+P+   +V+R+A ++V Y++   + 
Sbjct: 78  DVGE-----GLLELINPTIIRK-EGTEIDTEGCLSVPEIYGEVERAAKVSVEYLNRRGRR 131

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             I A GLLA CLQHE+DHL+G LFID  + L +
Sbjct: 132 HRITATGLLARCLQHEIDHLHGRLFIDIANNLHK 165


>gi|300855374|ref|YP_003780358.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300435489|gb|ADK15256.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 156

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 3/155 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ F D +LR+VSR ++ I+ + + ++ ++ + +Y++ G+GL+A QIG+L R++ 
Sbjct: 1   MAVREILKFGDKLLRKVSRKVKNIDEETLGIVQDLKDTLYASSGVGLSAPQIGILKRIIF 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL       +P+V INPKI+      +   EGCLS   +   V R   + V   D N  
Sbjct: 61  IDLG--KENTDPVVLINPKIVKKMG-RNEGPEGCLSYNGHEGIVVRPKKVIVVGEDINGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A+GL A    HE+DHL+G+L+ D   ++ +
Sbjct: 118 EVRYNAEGLFARAFCHEIDHLDGVLYTDKAKKVYK 152


>gi|159463814|ref|XP_001690137.1| peptide deformylase [Chlamydomonas reinhardtii]
 gi|158284125|gb|EDP09875.1| peptide deformylase [Chlamydomonas reinhardtii]
          Length = 248

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP LR V+  I   +  +M L   M+E+MY  DG+GLAA Q+GV  RL+V +   
Sbjct: 58  IIKYPDPRLRAVNAKINVFDESLMRLAKEMIEIMYQDDGVGLAAPQVGVNVRLMVFNPMG 117

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                N  + +NP+I+       + +EGCLS P    DV+RS  I V+ +D   Q   + 
Sbjct: 118 RDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQINVKALDATGQPVKLT 177

Query: 126 -ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             D  +A   QHE DHL G+LF D +     + +  ++  L +
Sbjct: 178 LTDPWVARIFQHEFDHLQGVLFHDRMKPSVLETVRPELVALEE 220


>gi|262091759|gb|ACY25348.1| peptide deformylase [uncultured actinobacterium]
          Length = 180

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 6/160 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  + DP+L  ++  I  I+  ++ L ++M  VMY   G+GLA  QIGV  ++ V D+ D
Sbjct: 12  IRTYGDPVLAAMADEITNIDGKLVTLAEDMFRVMYQAPGLGLAGPQIGVQKQIFVYDVDD 71

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                +P V INPKI+  S +  VY EGCLSIP    ++ R   + V           I 
Sbjct: 72  -----DPQVIINPKIVESSGE-WVYDEGCLSIPGLYVEMLRPKKVLVSGFTLEGDEVQIE 125

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           AD LLA   QHE+DHL G+L  D +   +R++   + +K+
Sbjct: 126 ADELLARLFQHEIDHLQGVLMFDRMLPDQRELAIVEYAKV 165


>gi|154252515|ref|YP_001413339.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
 gi|154156465|gb|ABS63682.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
          Length = 207

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 13/179 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + +     P+LR ++RP+ +    ++  L+ +M+E M   +G GLAA Q+   +R+V
Sbjct: 1   MAIRKIARMGHPVLRGIARPVPDPTAPEVKALVRDMIETMIDANGAGLAAPQVYEPWRIV 60

Query: 60  VIDLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           V    +              H     V INP++   +++     EGCLS+P  R  V R 
Sbjct: 61  VFQAPESRLPEGVDETEAFDHTAPLTVLINPEVEILTEEMEKGWEGCLSVPGLRGSVPRH 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             +  R    N +     A G  A  +QHE DHL+GIL+   +  L   +   +    +
Sbjct: 121 TELRYRGYGLNGELIERRARGFHARVIQHECDHLDGILYPQRMDDLAELIFESEARAWL 179


>gi|291549493|emb|CBL25755.1| peptide deformylase [Ruminococcus torques L2-14]
          Length = 165

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +  +P+ K+      LI++ML+ MY   G+GLAA Q+G+L ++VV
Sbjct: 1   MAIREVREMGDDVLEKQCKPVTKMTLRTKILIEDMLDTMYEKMGVGLAAPQVGILKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S +    +EGCLS+P     V R  ++ VR ++ N +
Sbjct: 61  IDVGE-----GPIVLINPEIVETSGE-QTGEEGCLSVPGKWGIVTRPNYVKVRALNENME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I  + LLA    HE+DHL G L+++ + 
Sbjct: 115 EFEIEGEELLARAFCHEIDHLGGHLYVEKVE 145


>gi|295706332|ref|YP_003599407.1| peptide deformylase [Bacillus megaterium DSM 319]
 gi|294803991|gb|ADF41057.1| peptide deformylase [Bacillus megaterium DSM 319]
          Length = 157

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  LV  P+ +L +    ++  ++ +  L++ M ++M   DG+GLAA Q+GVL ++ V
Sbjct: 1   MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R   +  INP II    +  +  EGCLS P    DV R+ ++ VR  +   +
Sbjct: 61  VDVDD---RHGKIELINPVIIEQRGE-QIGPEGCLSFPGLFGDVARADYVKVRAQNRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A G LA  +QHE+DHL+G+LF + +++
Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148


>gi|148655206|ref|YP_001275411.1| peptide deformylase [Roseiflexus sp. RS-1]
 gi|254767600|sp|A5US58|DEF_ROSS1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148567316|gb|ABQ89461.1| peptide deformylase [Roseiflexus sp. RS-1]
          Length = 185

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 16/169 (9%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +P    IL     P+   N  +  L+ +M E M++  G+GLAA QIG+  
Sbjct: 1   MALRRILRIDNPDDKKILTTRCHPVRLPNPALKQLVADMFETMHAASGVGLAAPQIGITQ 60

Query: 57  RLVVIDLQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           RL VI +      +              V INP+II  SD   V  EGCLS+P +  +V 
Sbjct: 61  RLAVISIPPVVEERPDGSKVEVAPEQNFVLINPEIIKASDQEDVGLEGCLSLPGWYGEVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRL 153
           R+A++TV Y D N + Q I    GLL   LQHE+DHL+GILF + +  L
Sbjct: 121 RAAWVTVEYTDLNGRRQRIRRATGLLGRALQHEIDHLDGILFTERIRDL 169


>gi|300934596|ref|ZP_07149852.1| polypeptide deformylase [Corynebacterium resistens DSM 45100]
          Length = 222

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 80/176 (45%), Gaps = 26/176 (14%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+VI  DP+L   ++P+E       ++++  LI++M E M    G+GLAA Q+GV 
Sbjct: 1   MTIMPIVIAGDPVLHNPTKPVELQEGKAPSAELTQLINDMYETMDRAHGVGLAANQVGVD 60

Query: 56  YRLVVIDLQDHAHRKNPMV----------------FINPK-----IITFSDDFSVYQEGC 94
            RL V    D        +                 INP      I     D  + +EGC
Sbjct: 61  LRLFVYHCPDIEGADGERLTEEQIEANGGPMRRGCVINPTLETSDIPETMPDEEIDEEGC 120

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           LS+P Y     R+ +  V  +D N Q   +   G  A CLQHE+ HL+G L+ D L
Sbjct: 121 LSVPGYSFPTGRADWARVTGLDENGQPITVEGYGFFARCLQHEVGHLDGFLYTDVL 176


>gi|254451672|ref|ZP_05065109.1| peptide deformylase [Octadecabacter antarcticus 238]
 gi|198266078|gb|EDY90348.1| peptide deformylase [Octadecabacter antarcticus 238]
          Length = 165

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +P   LR  +  + +I  DI  L D M+  M +  G+GLAA Q+GV  RL V
Sbjct: 1   MPHRPFIPWPAKALRTPAVEVTEITDDIRALWDEMINAMDAMPGVGLAAPQLGVSLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R + +   NP I+  S +  +++E   ++P   A ++R   +TVR+M+    
Sbjct: 61  VDASDK--RGSAIRMANPTILHASHELRLHEEASPNLPGLSASLERPRAVTVRFMNDAGM 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +      GL AT +QH++DHL+G ++ D LSR KRDM+ KK  KL
Sbjct: 119 YDRRDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163


>gi|107100575|ref|ZP_01364493.1| hypothetical protein PaerPA_01001600 [Pseudomonas aeruginosa PACS2]
 gi|254239493|ref|ZP_04932815.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192]
 gi|126192871|gb|EAZ56934.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192]
          Length = 179

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R+++P+      + ++  LID+M E M+   G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +      +     P + +NP+I    D+     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAPAVPPTILLNPRITLLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D   Q      +G  A  +QHE DHL G L+   ++   +   T+ +
Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSKFGFTEVL 169


>gi|326202810|ref|ZP_08192677.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
 gi|325986887|gb|EGD47716.1| peptide deformylase [Clostridium papyrosolvens DSM 2782]
          Length = 151

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 7/157 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +    D +LR+  RP+E++N  I +L+ +M + MY T +G GLAA Q+G+L R +
Sbjct: 1   MALRNIRTVEDEVLRKKCRPVEEVNDKIRDLLKDMADTMYDTGNGAGLAAPQVGILKRAI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D       +  +NP+II       V  EGCLSIP     V R   + V+ ++   
Sbjct: 61  VIDMGD-----GLINLVNPEIIEQKGSQEVI-EGCLSIPGKWGKVIRPYEVRVKALNEKG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
           +  +I     +A CL HE+DHL+GILF D ++   ++
Sbjct: 115 EEVVIKGKKEMAKCLCHEIDHLDGILFTDKVTEYIKE 151


>gi|320537113|ref|ZP_08037086.1| peptide deformylase [Treponema phagedenis F0421]
 gi|320146038|gb|EFW37681.1| peptide deformylase [Treponema phagedenis F0421]
          Length = 167

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 85/156 (54%), Gaps = 5/156 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++   +  LR+ S P+E I  +I +L+  M   M   DGIGLAA QIG   R+ V  + 
Sbjct: 2   EILYLGEESLRQKSIPVENITEEIKDLVQKMFVTMKIKDGIGLAAPQIGKNIRIFVTGVN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                    VFINP+II  S+    Y+EGCLSIP     V R   +TV+Y + + + + +
Sbjct: 62  -----NEQRVFINPQIIETSEKVCSYEEGCLSIPQIYEKVVRPETVTVQYQNIDGRRKTL 116

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              GLLA  +QHE DHL+G+LFID +    R+   K
Sbjct: 117 QTTGLLARVIQHENDHLDGVLFIDRIDEKLREEAIK 152


>gi|168180956|ref|ZP_02615620.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|182668254|gb|EDT80233.1| peptide deformylase [Clostridium botulinum NCTC 2916]
          Length = 178

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ F D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQFGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+   + + P++ INPK           +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|50955168|ref|YP_062456.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951650|gb|AAT89351.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 163

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + +F DP+L+ +S P+ +++  + +L+ ++++ +      G+AA QIGV  R   
Sbjct: 1   MTERQIRLFGDPVLKTLSEPVGELDESVRSLVQDLVDTVLPPGRAGVAAPQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP+++  S +  +  EGCLS+P       R  F  VR +D +  
Sbjct: 61  YNVDGEVGY-----ILNPELVEVSGEPELVDEGCLSVPGLWFKTVRYPFARVRGIDLDGA 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G++A  LQHE DHL G L++D L R  R    K++ +
Sbjct: 116 EIELSGTGVMAQALQHETDHLEGKLYLDRLDRGSRREAMKQIRE 159


>gi|126640269|ref|YP_001083253.1| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
           ATCC 17978]
          Length = 142

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M E MY+  GIGLAA Q+    +L+V+DL +   +  PMVFINPK+   +++   Y+EGC
Sbjct: 1   MFETMYAAPGIGLAASQVDRHIQLIVMDLSES--KDEPMVFINPKVTPLTEETQPYEEGC 58

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           LS+P     V R + + +  ++   Q   I ADGLLA C+QHE+DHLNG LF+D+LS LK
Sbjct: 59  LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 118

Query: 155 RDMITKKMSKLVQLRD 170
           R    +K+ K+V+ R+
Sbjct: 119 RQRAREKVEKIVRQRE 134


>gi|292670259|ref|ZP_06603685.1| peptide deformylase [Selenomonas noxia ATCC 43541]
 gi|292648211|gb|EFF66183.1| peptide deformylase [Selenomonas noxia ATCC 43541]
          Length = 156

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 4/160 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    +P+L++ + PIE++      ++D+M E MY+ +G+GLAA QIG   RLVV
Sbjct: 1   MAILEIKKAGNPVLKQKAEPIERLTKRHRQMLDDMAETMYAANGVGLAAPQIGKSLRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D       +  +NP I T  +   V  EGCLSIP    DV+R+  +TV Y D  ++
Sbjct: 61  IDVED---EHGLLELVNPVI-TMREGSVVDSEGCLSIPKVYGDVERAERVTVEYTDRRSR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + + ADGLLA C+QHE DHL+G LFID    L+++   +
Sbjct: 117 RRTLTADGLLARCIQHECDHLDGRLFIDIAINLRKEEEKE 156


>gi|223936792|ref|ZP_03628702.1| peptide deformylase [bacterium Ellin514]
 gi|223894643|gb|EEF61094.1| peptide deformylase [bacterium Ellin514]
          Length = 191

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 17/180 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++ +  P+LR+    + ++ S+I   I +M E MY + GIGLAA Q+    ++ V
Sbjct: 1   MSLK-VIKYGHPVLRKKGEKVTRVTSEIKQFIKDMFETMYESRGIGLAAQQVARAVQITV 59

Query: 61  IDLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           ID++    R                 P+V INP++           EGCLS P+  A++ 
Sbjct: 60  IDVRGITDRPSTLELNGKPASVEKFMPLVLINPEVKPV-GPKVAGTEGCLSFPEIFAEIT 118

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           R   + V  M+ N +     A GLLA  +QHE DHLNGILFID +    +  +  ++ +L
Sbjct: 119 RPETVDVVAMNENGERIEFRAGGLLARAVQHETDHLNGILFIDRMDTETKQELKPELEEL 178


>gi|269792636|ref|YP_003317540.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100271|gb|ACZ19258.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 168

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 6/167 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              + +FPDP+LR+    +     ++ +L+ +M   MY+ DG+GLAA Q+G+   L VID
Sbjct: 8   VLKVRVFPDPVLRQPVEEVRDFGEELSDLLADMWATMYAKDGVGLAAPQVGISKSLAVID 67

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                H  +  V +NP+I++  D     +EGCLS P    +VKR + I +R+ D     +
Sbjct: 68  -----HHGDRYVVVNPQILSQ-DGEEEGEEGCLSFPGIFVNVKRPSRIRLRFQDETGAVK 121

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   G +A    HE+DHL G L IDH+S ++R MI  +++K  + R
Sbjct: 122 EMELQGFIARVFLHEIDHLRGRLLIDHVSPIRRQMIKTRLAKRSEDR 168


>gi|294678912|ref|YP_003579527.1| peptide deformylase [Rhodobacter capsulatus SB 1003]
 gi|294477732|gb|ADE87120.1| peptide deformylase-1 [Rhodobacter capsulatus SB 1003]
          Length = 169

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 4/160 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRL 58
           M  +P + F D  L   + P+E I  +I  +  +M++ M +  G  +GLAA QIGV+ RL
Sbjct: 1   MAVRPFIRFDDKRLHTAAAPVEAITDEIRAIWADMVDTMEAMPGQGVGLAAPQIGVMLRL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            V+D  +   R   ++  NP+++  S     + E   ++P   A + R   +TVR+++  
Sbjct: 61  AVVDASEA--RGQAILMANPEVLHASGQMREHDEASPNLPGVWATISRPRAVTVRFLNAA 118

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            + +      L AT +QH++DHLNG  ++DHLS LKR M+
Sbjct: 119 GEIEERDFVHLWATSVQHQIDHLNGKTYVDHLSMLKRKML 158


>gi|269926311|ref|YP_003322934.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789971|gb|ACZ42112.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798]
          Length = 203

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 99/180 (55%), Gaps = 16/180 (8%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +P    +LR+ S P+ K +S++  L+++M+E M   DG+GL+AVQ+G L 
Sbjct: 1   MAVRRILQMENPDDLSVLRKRSSPVTKFDSELRKLVEDMIETMREADGVGLSAVQVGDLR 60

Query: 57  RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           R+VV+++     +               V INP+I   S D    QEGCLS+P   A+V 
Sbjct: 61  RVVVMEMPGKYEQDEDGNQIEVSPPKLYVMINPEITKVSHDRIPMQEGCLSLPGRYAEVP 120

Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           R+ ++ VRY D N +    +  + LL+ C+QHE+DHL+GILF + +         ++  K
Sbjct: 121 RAPWVEVRYKDLNGKEHKLLAEEQLLSQCIQHEVDHLDGILFTERIVDWSTFRDERQKQK 180


>gi|293189859|ref|ZP_06608573.1| peptide deformylase [Actinomyces odontolyticus F0309]
 gi|292821274|gb|EFF80219.1| peptide deformylase [Actinomyces odontolyticus F0309]
          Length = 163

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I  ++  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NP+I+  S D++    EGCLS+P+     +R+ +      D +A
Sbjct: 61  WNIDGEIGY-----VLNPRIVALSEDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDA 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  ++  + L+A C+QHE DHL+G ++ID L R  R    + + 
Sbjct: 116 KKVVVEGEELMARCIQHECDHLDGHIYIDRLDRATRKKALRDIR 159


>gi|294102012|ref|YP_003553870.1| peptide deformylase [Aminobacterium colombiense DSM 12261]
 gi|293616992|gb|ADE57146.1| peptide deformylase [Aminobacterium colombiense DSM 12261]
          Length = 164

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +  +PDP+LR+ +  I+  +S +M+LI+ M  +M  +DG+GLAA Q+GV  +L +
Sbjct: 1   MKKFLIRTYPDPVLRKETEAIDLFDSKLMDLIEEMKVIMLESDGVGLAAPQVGVSKKLAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +  +     V INP ++    +  V +EGCLS P    +V R   + +   + + +
Sbjct: 61  VYYDETLY-----VLINPILLKADGE-QVSEEGCLSFPGIFGNVLRPRHVVIEAYNEHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I A+  LA    HE+DHL G L IDH S LK+++I K+M +  +
Sbjct: 115 KLTIEAEDFLARAFLHEMDHLEGRLLIDHFSPLKKNIIRKRMRQHAK 161


>gi|313894829|ref|ZP_07828389.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976510|gb|EFR41965.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 156

 Score =  174 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+L++V+ PI+++      L+D+M E MYS +G+GLAA QIG   R+VV
Sbjct: 1   MAVLEIKKAGDPVLKQVAEPIDRLTKRHRQLLDDMAETMYSANGVGLAAPQIGKSIRMVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D       +  INP I T  +   V  EGCLS+P    DV+R+A +TV Y D  ++
Sbjct: 61  IDVED---EHGLLELINPVI-TMREGTVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + + A+GLLA C+QHE DHL+G LFID
Sbjct: 117 RRSLTAEGLLARCIQHECDHLDGRLFID 144


>gi|270284179|ref|ZP_05965690.2| peptide deformylase [Bifidobacterium gallicum DSM 20093]
 gi|270277263|gb|EFA23117.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
          Length = 169

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ + PDP+LR    PI++I   I +L+ ++L+ +      GL+A QIGV  R    
Sbjct: 10  AIRPIRVVPDPVLRTQCDPIKEITPAIRHLVQDLLDTVDDPGRAGLSANQIGVPLRAFSY 69

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++            +NP +     +     EGCLS+P      +R+ +   R +D +   
Sbjct: 70  NIDGKIGY-----ILNPVLEETRGE-QYGDEGCLSVPGLWYKTRRADYARCRGIDLDGNE 123

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            ++  DG++   +QHE DHL+G +++D L + +R    K M +  Q
Sbjct: 124 VVLEGDGIMGRMIQHETDHLDGHVYLDRLEKEERRAALKYMREHQQ 169


>gi|119716828|ref|YP_923793.1| peptide deformylase [Nocardioides sp. JS614]
 gi|119537489|gb|ABL82106.1| peptide deformylase [Nocardioides sp. JS614]
          Length = 199

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  +  P++ R  +P+   + ++  L  +M+  MY+ DG+GLAA QIGV   + V 
Sbjct: 22  TARSITRWGTPVMHRAQQPVTTYDDELRALAADMVATMYAADGVGLAACQIGVDLAMFVF 81

Query: 62  DLQDHAHRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D +      V  NP++             +EGCLS P    +  R    +V     +
Sbjct: 82  DCPDDSGVHTVGVVCNPQLTLPEGRDRQLDESEEGCLSFPGAHVECARPDQASVTGTGLD 141

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +      DGLLA CLQHE DH  G +F D LS   R  + K   + V+
Sbjct: 142 GEPVSFSGDGLLARCLQHETDHTRGTVFGDRLSTKLRKRLQKAHDRAVE 190


>gi|152964372|ref|YP_001360156.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
 gi|151358889|gb|ABS01892.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
          Length = 200

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 7/165 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           V  P+  +  P+L R + P+   + D++ L+ +M   M + DG+GLAA QIGV  R+ V+
Sbjct: 24  VVHPITRYFTPVLHRPTTPVTSFDEDLVQLVADMFASMDAADGVGLAANQIGVDARVFVV 83

Query: 62  DLQDHA----HRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           D  D              +NP +   +       +  EGCLS+P   AD+ R    TV  
Sbjct: 84  DCPDDDTERTGENVVAHVVNPVLELPTGRRRRLDLDGEGCLSVPGEYADLARPDKATVTG 143

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            D +     I   GLLA CLQHE DHL+G++++D L   +R  I 
Sbjct: 144 KDVHGNPVKIVGTGLLARCLQHESDHLDGVVYVDRLPAEQRAEIL 188


>gi|270308074|ref|YP_003330132.1| peptide deformylase [Dehalococcoides sp. VS]
 gi|270153966|gb|ACZ61804.1| peptide deformylase [Dehalococcoides sp. VS]
          Length = 167

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+P+LR+ ++ +  I+S I  LID+M+E M S DG GLAA Q+GV  RLVV
Sbjct: 1   MAIRRICELPEPVLRKKAKKVPSIDSSIQTLIDDMIETMSSADGAGLAAPQVGVSLRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D        V INP+I+       V  EGCLSIP Y  ++ R+  +T + +D + +
Sbjct: 61  FREPDAKEA---TVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              I   G++A  L+HE +HL+GIL+IDHL   ++
Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESEEK 151


>gi|323701801|ref|ZP_08113472.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574]
 gi|323533337|gb|EGB23205.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574]
          Length = 151

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 6/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V   D ILR+ ++P++++  +I+ L+DNM + MY+  G+GLAA QIGV  R   
Sbjct: 1   MAVYQIVEIGDEILRQKAKPVKEVTLNIIKLLDNMADTMYANKGVGLAAPQIGVSKR--- 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +         +  INP+I+  +    +  EGCLS+P    +V R+  I V+ ++   +
Sbjct: 58  --VVVVDVGDGLVELINPEIVEATGS-VIDTEGCLSVPGMIGEVARAERIVVQGLNRKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A G LA   QHE+DHL+GI+++D    L++
Sbjct: 115 QVTYQAKGFLARAFQHEIDHLDGIIYVDKAKNLRK 149


>gi|238926274|ref|ZP_04658034.1| peptide deformylase [Selenomonas flueggei ATCC 43531]
 gi|238885954|gb|EEQ49592.1| peptide deformylase [Selenomonas flueggei ATCC 43531]
          Length = 160

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 4/160 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+L++ + PIE++      L+D+M E MY+ DG+GLAA Q+G   R+VV
Sbjct: 5   MAILDIKKAGDPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD       +  +NP I T  +      EGCLS+P    DV+R+  +TV Y D  ++
Sbjct: 65  IDVQD---EHGLLELVNPVI-TMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + + A+GLLA C+QHE DHL G LFID   RL+++   +
Sbjct: 121 RRTLTAEGLLARCIQHECDHLEGRLFIDIAVRLRKEEEEE 160


>gi|226305513|ref|YP_002765473.1| peptide deformylase [Rhodococcus erythropolis PR4]
 gi|226184630|dbj|BAH32734.1| peptide deformylase [Rhodococcus erythropolis PR4]
          Length = 188

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P++ +  P+L   +RP+ +  SD+ +L+ +M     +  G GLAA QIGV   + + 
Sbjct: 11  TAQPIIRWGTPVLHAPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 70

Query: 62  DLQDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    +   V  NP +              EGCLS+P    D+ R  F T R  D  
Sbjct: 71  DCTDEVGTQRTGVVCNPVVDLPEAVDRQLVDDCEGCLSLPGAYTDLARPDFSTCRGNDQY 130

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                I A G L  C QHE DH+NGI+F D L   KR  + +
Sbjct: 131 GNPIEITAGGTLGRCFQHETDHINGIVFGDRLPTRKRKQLYR 172


>gi|304437066|ref|ZP_07397029.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370017|gb|EFM23679.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 160

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+L++ + PIE++      L+D+M E MY+ DG+GLAA Q+G   R+VV
Sbjct: 5   MAILDIKKAGDPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD       +  +NP I T  +      EGCLS+P    DV+R+  +TV Y D  ++
Sbjct: 65  IDVQD---EHGLLELVNPVI-TMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            + + A+GLLA C+QHE DHL G LFID   RL++
Sbjct: 121 RRTLTAEGLLARCIQHECDHLEGRLFIDIAVRLRK 155


>gi|148380578|ref|YP_001255119.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|148290062|emb|CAL84181.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
          Length = 156

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 1   MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+   + + P++ INPK           +EGCLS P Y   V R   + +  ++   +
Sbjct: 61  IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 117 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 151


>gi|111019169|ref|YP_702141.1| peptide deformylase [Rhodococcus jostii RHA1]
 gi|110818699|gb|ABG93983.1| peptide deformylase [Rhodococcus jostii RHA1]
          Length = 196

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +  + +  +++  +I +M + M + +G+GLAA Q+G+  RL V
Sbjct: 1   MAILPIRIVGDPVLHEPTEAVSQSPAELAEIIADMYDTMDAANGVGLAANQVGLPLRLFV 60

Query: 61  IDLQDHAHR----KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFIT 111
            D  D        +     +NP + T        D     EGCLS+P  +    R+ +  
Sbjct: 61  YDCPDVDGDGKALRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGRAEWAK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           V   D +     I   G  A  LQHE+ HL+G L++D L         K + +
Sbjct: 121 VTGTDADGNAVEIEGHGFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKR 173


>gi|229489380|ref|ZP_04383243.1| polypeptide deformylase [Rhodococcus erythropolis SK121]
 gi|229323477|gb|EEN89235.1| polypeptide deformylase [Rhodococcus erythropolis SK121]
          Length = 212

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P++ +  P+L   +RP+ +  SD+ +L+ +M     +  G GLAA QIGV   + + 
Sbjct: 35  TAQPIIRWGTPVLHTPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 94

Query: 62  DLQDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    +   V  NP +            Y EGCLS+P    D+ R  F T R  D  
Sbjct: 95  DCTDEVGTQRTGVVCNPVVDLPEGVDRQLVDYCEGCLSLPGAYTDLARPDFSTCRGNDQY 154

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                I A G L  C QHE DH+NGI+F D L   KR  + +
Sbjct: 155 GNPIEITAGGTLGRCFQHEADHINGIVFGDRLPTRKRKQLYR 196


>gi|255535832|ref|YP_003096203.1| peptide deformylase [Flavobacteriaceae bacterium 3519-10]
 gi|255342028|gb|ACU08141.1| Peptide deformylase [Flavobacteriaceae bacterium 3519-10]
          Length = 190

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 63/161 (39%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  F D +LR+  + I K   D+  LI NM + M S  GIGLAA Q+G+  RL ++
Sbjct: 1   MILPIRAFGDAVLRKHCQEITKDYPDLDELIANMFDTMNSAHGIGLAAPQVGLDIRLFIV 60

Query: 62  DLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           DL   A  ++             V IN KI+  + +   + EGCLSIPD R DVKR   I
Sbjct: 61  DLSPLAEDEDYADIADELKDFKKVLINAKILEETGEEWKFNEGCLSIPDIREDVKRKETI 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + Y D N          + A  +QHE DH+ GILF DHLS
Sbjct: 121 VIEYYDENFVKHTDTFSDMRARVIQHEYDHIEGILFTDHLS 161


>gi|313836783|gb|EFS74497.1| peptide deformylase [Propionibacterium acnes HL037PA2]
 gi|314929809|gb|EFS93640.1| peptide deformylase [Propionibacterium acnes HL044PA1]
 gi|314972238|gb|EFT16335.1| peptide deformylase [Propionibacterium acnes HL037PA3]
          Length = 209

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  + +P+L   +RPI + + D+  LI +M   M + DG+GLAA Q+GV   L V 
Sbjct: 29  ALRRVTRWGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVY 88

Query: 62  DLQDHAHRKNPMVFINPKIITFSD---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              D  +  +   F NP +              EGCLS P     + R    T    D  
Sbjct: 89  ACPDADNVVHHGAFCNPVVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPW 148

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +   G  A CLQHE DH NG++F D LS+  R  + ++   +  L
Sbjct: 149 GNDITVTGTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQHDAVAHL 198


>gi|312796239|ref|YP_004029161.1| peptide deformylase [Burkholderia rhizoxinica HKI 454]
 gi|312168014|emb|CBW75017.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI
           454]
          Length = 177

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   DP L R+++P+++ N  ++  LI +M E M + +G GLAA QIGV  ++V+
Sbjct: 1   MIHEILKMGDPRLLRMAKPVDRFNTPELHQLIQDMFETMRAANGAGLAAPQIGVDLQVVI 60

Query: 61  IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                +A   +       V INP I   S D     EGCLS+P  R  V R + I     
Sbjct: 61  FGFGQNARYPDAPAVPETVLINPMITPVSLDMEEGWEGCLSVPGLRGIVSRLSMIRYEGH 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   Q     A+G  A  +QHE DHL G L+   ++       TK +
Sbjct: 121 DQYGQPIDRIAEGFHARVVQHECDHLIGRLYPMRITDFSNFGFTKVL 167


>gi|302525482|ref|ZP_07277824.1| peptide deformylase [Streptomyces sp. AA4]
 gi|302434377|gb|EFL06193.1| peptide deformylase [Streptomyces sp. AA4]
          Length = 166

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L  F DP+L+ V  P+   +S I  L+ ++L+ +      GLAA QIGV  R+  
Sbjct: 1   MAMRELRYFGDPVLKSVCDPVTTFDSKIEALVKDLLDSVQPEGRAGLAAPQIGVGLRVFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+            INP+I+  S++     EGCLS+P+      R+    VR +D   +
Sbjct: 61  YDVGGLTGY-----VINPEIVHLSEETHEIGEGCLSVPELWFPTVRAKHAVVRGVDLRNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +    +LA CLQHE DHL+G L++D L+  ++    ++  
Sbjct: 116 PIEVEGVDVLAQCLQHETDHLDGKLYLDRLTPDRKKQALREAR 158


>gi|227496282|ref|ZP_03926578.1| peptide deformylase [Actinomyces urogenitalis DSM 15434]
 gi|226834207|gb|EEH66590.1| peptide deformylase [Actinomyces urogenitalis DSM 15434]
          Length = 163

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  DP+LR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAYRDIRIIGDPVLRTQCEWITDIDDSVKQLVEDLLETVDEDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++            +NP+I   + D++    EGCLS+P      KR+ +     +D + 
Sbjct: 61  WNIDGEIGY-----ILNPRIDELNFDEYQDGDEGCLSVPGLWYPTKRAWYARATGIDLDG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +  ++  + L+  C+QHE DHL G L++D L R  R    K +  
Sbjct: 116 KEVVVEGEELMGRCIQHECDHLEGHLYLDRLDRKNRAKAMKDLRA 160


>gi|187932490|ref|YP_001886374.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
 gi|187720643|gb|ACD21864.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
          Length = 149

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + ++ DPILR+ S+ +E ++  I +++++M E MY+T +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLYDDPILRKKSKEVEVVDDKIRDILNDMAETMYNTENGAGLAAPQVGMLKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  INPKII       V  EGCLS P+    +KR   + +  ++ N 
Sbjct: 61  VIDM-----WQGLIKLINPKIIKKEGSQEVI-EGCLSNPNVFGKLKRPYKVIIEALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +   +   G LA C  HE+DHL+GILF D ++ 
Sbjct: 115 EEIQLTGTGDLAKCFCHEIDHLDGILFTDLVTE 147


>gi|255306782|ref|ZP_05350953.1| peptide deformylase 1 [Clostridium difficile ATCC 43255]
          Length = 151

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + +  F D ILR+ S+ +E +++ I  ++++M E MY+T  G GLAA Q+GVL RLV
Sbjct: 1   MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +       +  +NP+II    +  V  EGCLS P+    +KR   +TV+ ++   
Sbjct: 61  VIDLGE-----GLIKLVNPEIIEQEGEQIVV-EGCLSFPEVWGKLKRPKKVTVQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +   I   G +A CL HE+DHLNGI+F D +
Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145


>gi|15607570|ref|NP_214943.1| peptide deformylase [Mycobacterium tuberculosis H37Rv]
 gi|15839816|ref|NP_334853.1| peptide deformylase [Mycobacterium tuberculosis CDC1551]
 gi|121636343|ref|YP_976566.1| peptide deformylase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660194|ref|YP_001281717.1| peptide deformylase [Mycobacterium tuberculosis H37Ra]
 gi|148821625|ref|YP_001286379.1| peptide deformylase [Mycobacterium tuberculosis F11]
 gi|167970754|ref|ZP_02553031.1| peptide deformylase [Mycobacterium tuberculosis H37Ra]
 gi|215402181|ref|ZP_03414362.1| peptide deformylase [Mycobacterium tuberculosis 02_1987]
 gi|215409945|ref|ZP_03418753.1| peptide deformylase [Mycobacterium tuberculosis 94_M4241A]
 gi|215425650|ref|ZP_03423569.1| peptide deformylase [Mycobacterium tuberculosis T92]
 gi|215429251|ref|ZP_03427170.1| peptide deformylase [Mycobacterium tuberculosis EAS054]
 gi|215444525|ref|ZP_03431277.1| peptide deformylase [Mycobacterium tuberculosis T85]
 gi|218752062|ref|ZP_03530858.1| peptide deformylase [Mycobacterium tuberculosis GM 1503]
 gi|219556250|ref|ZP_03535326.1| peptide deformylase [Mycobacterium tuberculosis T17]
 gi|224988815|ref|YP_002643502.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797353|ref|YP_003030354.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435]
 gi|254230779|ref|ZP_04924106.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis C]
 gi|254363393|ref|ZP_04979439.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549376|ref|ZP_05139823.1| peptide deformylase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185296|ref|ZP_05762770.1| peptide deformylase [Mycobacterium tuberculosis CPHL_A]
 gi|260199427|ref|ZP_05766918.1| peptide deformylase [Mycobacterium tuberculosis T46]
 gi|260203579|ref|ZP_05771070.1| peptide deformylase [Mycobacterium tuberculosis K85]
 gi|289441809|ref|ZP_06431553.1| polypeptide deformylase [Mycobacterium tuberculosis T46]
 gi|289445969|ref|ZP_06435713.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A]
 gi|289552678|ref|ZP_06441888.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605]
 gi|289568345|ref|ZP_06448572.1| polypeptide deformylase def [Mycobacterium tuberculosis T17]
 gi|289573014|ref|ZP_06453241.1| polypeptide deformylase def [Mycobacterium tuberculosis K85]
 gi|289744125|ref|ZP_06503503.1| peptide deformylase [Mycobacterium tuberculosis 02_1987]
 gi|289748913|ref|ZP_06508291.1| polypeptide deformylase def [Mycobacterium tuberculosis T92]
 gi|289752458|ref|ZP_06511836.1| peptide deformylase [Mycobacterium tuberculosis EAS054]
 gi|289756502|ref|ZP_06515880.1| polypeptide deformylase def [Mycobacterium tuberculosis T85]
 gi|289760545|ref|ZP_06519923.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis GM 1503]
 gi|294995934|ref|ZP_06801625.1| peptide deformylase [Mycobacterium tuberculosis 210]
 gi|297632913|ref|ZP_06950693.1| peptide deformylase [Mycobacterium tuberculosis KZN 4207]
 gi|297729888|ref|ZP_06959006.1| peptide deformylase [Mycobacterium tuberculosis KZN R506]
 gi|298523906|ref|ZP_07011315.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306774525|ref|ZP_07412862.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001]
 gi|306779274|ref|ZP_07417611.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002]
 gi|306783063|ref|ZP_07421385.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003]
 gi|306787430|ref|ZP_07425752.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004]
 gi|306791982|ref|ZP_07430284.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005]
 gi|306796169|ref|ZP_07434471.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006]
 gi|306802026|ref|ZP_07438694.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008]
 gi|306806238|ref|ZP_07442906.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007]
 gi|306966434|ref|ZP_07479095.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009]
 gi|306970629|ref|ZP_07483290.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010]
 gi|307078354|ref|ZP_07487524.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011]
 gi|307082913|ref|ZP_07492026.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012]
 gi|313657217|ref|ZP_07814097.1| peptide deformylase [Mycobacterium tuberculosis KZN V2475]
 gi|6225255|sp|P96275|DEF_MYCTU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512922|sp|A1KFQ1|DEF_MYCBP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158513357|sp|A5TZF5|DEF_MYCTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767595|sp|C1AKA5|DEF_MYCBT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|221046693|pdb|3E3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Peptide
           Deformylase In Complex With Inhibitor
 gi|1817695|emb|CAB06569.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE
           DEFORMYLASE) [Mycobacterium tuberculosis H37Rv]
 gi|13879947|gb|AAK44667.1| peptide deformylase [Mycobacterium tuberculosis CDC1551]
 gi|121491990|emb|CAL70453.1| Probable polypeptide deformylase def [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124599838|gb|EAY58848.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis C]
 gi|134148907|gb|EBA40952.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504346|gb|ABQ72155.1| peptide deformylase [Mycobacterium tuberculosis H37Ra]
 gi|148720152|gb|ABR04777.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis F11]
 gi|224771928|dbj|BAH24734.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253318856|gb|ACT23459.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435]
 gi|289414728|gb|EFD11968.1| polypeptide deformylase [Mycobacterium tuberculosis T46]
 gi|289418927|gb|EFD16128.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A]
 gi|289437310|gb|EFD19803.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605]
 gi|289537445|gb|EFD42023.1| polypeptide deformylase def [Mycobacterium tuberculosis K85]
 gi|289542098|gb|EFD45747.1| polypeptide deformylase def [Mycobacterium tuberculosis T17]
 gi|289684653|gb|EFD52141.1| peptide deformylase [Mycobacterium tuberculosis 02_1987]
 gi|289689500|gb|EFD56929.1| polypeptide deformylase def [Mycobacterium tuberculosis T92]
 gi|289693045|gb|EFD60474.1| peptide deformylase [Mycobacterium tuberculosis EAS054]
 gi|289708051|gb|EFD72067.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289712066|gb|EFD76078.1| polypeptide deformylase def [Mycobacterium tuberculosis T85]
 gi|298493700|gb|EFI28994.1| polypeptide deformylase def (formylmethionine deformylase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308216874|gb|EFO76273.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001]
 gi|308327718|gb|EFP16569.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002]
 gi|308332080|gb|EFP20931.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003]
 gi|308335895|gb|EFP24746.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004]
 gi|308339472|gb|EFP28323.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005]
 gi|308343337|gb|EFP32188.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006]
 gi|308347247|gb|EFP36098.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007]
 gi|308351177|gb|EFP40028.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008]
 gi|308355830|gb|EFP44681.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009]
 gi|308359750|gb|EFP48601.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010]
 gi|308363691|gb|EFP52542.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011]
 gi|308367344|gb|EFP56195.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012]
 gi|323721101|gb|EGB30163.1| polypeptide deformylase def [Mycobacterium tuberculosis CDC1551A]
 gi|326902255|gb|EGE49188.1| polypeptide deformylase def [Mycobacterium tuberculosis W-148]
 gi|328457139|gb|AEB02562.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 4207]
          Length = 197

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+          D+  LI  M + M + +G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60

Query: 56  YRLVVIDL--QDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D         +   V INP     +I     D     EGCLS+P       R+ 
Sbjct: 61  LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     I   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRL 162


>gi|108797549|ref|YP_637746.1| peptide deformylase [Mycobacterium sp. MCS]
 gi|119866635|ref|YP_936587.1| peptide deformylase [Mycobacterium sp. KMS]
 gi|126433171|ref|YP_001068862.1| peptide deformylase [Mycobacterium sp. JLS]
 gi|122977465|sp|Q1BEJ4|DEF_MYCSS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158513055|sp|A1UAD9|DEF_MYCSK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158513446|sp|A3PTZ4|DEF_MYCSJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|108767968|gb|ABG06690.1| peptide deformylase [Mycobacterium sp. MCS]
 gi|119692724|gb|ABL89797.1| peptide deformylase [Mycobacterium sp. KMS]
 gi|126232971|gb|ABN96371.1| peptide deformylase [Mycobacterium sp. JLS]
          Length = 197

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+LR  + PI   +      ++ +LI ++ E M + +G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLRTETTPIPVGDDGSLPAEVADLIRDLYETMDAANGVGLAANQIGVS 60

Query: 56  YRLVVIDLQD--HAHRKNPMVFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D      +   V INP      I     D    +EGCLS+P  +    R+ 
Sbjct: 61  QRVFVYDCPDSRGRAGRRRGVVINPVLETSDIPETMPDPDDDEEGCLSVPGEQFPTGRAD 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  V  +D +     +   GL A  LQHE  HL+G L++D L         + + 
Sbjct: 121 WARVTGLDADGSPITVEGTGLFARMLQHETGHLDGFLYLDRLIGRHARAAKRAVK 175


>gi|58038609|ref|YP_190573.1| polypeptide deformylase [Gluconobacter oxydans 621H]
 gi|58001023|gb|AAW59917.1| Polypeptide deformylase [Gluconobacter oxydans 621H]
          Length = 170

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +    +P+L +V++ +      +I +LI +MLE M    G GLAA Q+    R+ 
Sbjct: 1   MPLLKIARMGNPVLHQVAQAVSDPKAPEIQSLIADMLETMADARGAGLAAPQVHQPLRIF 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           V  +      +      P V INP+I    D+  V  EGCLSIP  RADV R A +    
Sbjct: 61  VYHVPTNRVANPEEALLPRVLINPEITPVGDEMMVCSEGCLSIPGLRADVPRHAKVRYSG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +D N       A G  A  LQHE DHLNGIL+   ++   R    +++
Sbjct: 121 LDENGAVLEGEATGFHANVLQHENDHLNGILYPQRITDFARFGYVEEI 168


>gi|296167940|ref|ZP_06850084.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896930|gb|EFG76556.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 197

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++P+          D+  LI +M + M +  G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTQPVPVGADGSLPADLAALIADMYDTMDAAHGVGLAANQIGVG 60

Query: 56  YRLVVIDL--QDHAHRKNPMVFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D         +   V +NP      I     D     EGCLS+P       R+ 
Sbjct: 61  LRVFVYDCADDRGRTDRRRGVVVNPVLETSQIPETMPDPDNDDEGCLSVPGESFPTGRAT 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D + +   I   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGKPVEIEGSGLFARMLQHETGHLDGFLYLDRL 162


>gi|227505915|ref|ZP_03935964.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
 gi|227197437|gb|EEI77485.1| peptide deformylase [Corynebacterium striatum ATCC 6940]
          Length = 206

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 23/186 (12%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P+VI  DP+L   + P+ +   + ++  LI +M E M    G+GLAA Q+G+  RL
Sbjct: 1   MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMYETMDVAHGVGLAANQVGINKRL 60

Query: 59  VVIDLQDHAHRKNPMV-----------FINPKIITFS------DDFSVYQEGCLSIPDYR 101
            V    D    +   +            INP + T         D     EGCLS+P   
Sbjct: 61  FVYHCPDTDGPEGTELPADKAGMRKGCVINPVLETSEIPEGMPADDGSEDEGCLSVPGEG 120

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
               R+ +  V   D +     I   G  A  LQHE  HL+G ++ D L+        ++
Sbjct: 121 FPTGRADWARVTGKDEHGNDISIEGYGFFARMLQHETGHLDGFVYTDVLTG----RFKRQ 176

Query: 162 MSKLVQ 167
             K+++
Sbjct: 177 AKKIIK 182


>gi|262183416|ref|ZP_06042837.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 204

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P+VI  DP+L   + P+ +   + ++  LI +M E M +  G+GLAA QIGV  RL
Sbjct: 1   MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 60

Query: 59  VVIDLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            V    D                    NP++  +    T   D     EGCLS+P     
Sbjct: 61  FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             R+ +  V   +   +   I   G  A  LQHE  HL+G ++ D L+   +    K + 
Sbjct: 121 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKRQAKKAIK 180

Query: 164 K 164
           +
Sbjct: 181 R 181


>gi|116670231|ref|YP_831164.1| peptide deformylase [Arthrobacter sp. FB24]
 gi|116610340|gb|ABK03064.1| peptide deformylase [Arthrobacter sp. FB24]
          Length = 197

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 7/164 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA Q+GV  R+  
Sbjct: 3   MAILNIRIIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFT 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNA 119
             +            INP +   S+DF   + EGCLSIP     V+R     V  +D + 
Sbjct: 63  YRIGGVEG-----HIINPVL-ENSEDFQPDEVEGCLSIPGLGFPVRRRRATRVTGVDLHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
               +  +G+LA C QHE DHL+GILF D L    R    + + 
Sbjct: 117 HPVTVDGEGMLARCFQHETDHLDGILFTDRLEGEDRKAALRSIR 160


>gi|170723021|ref|YP_001750709.1| peptide deformylase [Pseudomonas putida W619]
 gi|169761024|gb|ACA74340.1| peptide deformylase [Pseudomonas putida W619]
          Length = 178

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L RV+ P+ +    ++++  LID+M E M    G+GLAA Q+G+  +L
Sbjct: 1   MIRDILKMGDERLLRVAAPVPEHLIGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   S +     EGCLS+P  R  V R   I+  
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPLSTEIEEGWEGCLSVPGLRGVVPRYKHISYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D         ADG  A  +QHE DHL G L+   +    +   T+ +
Sbjct: 121 GIDPQGNPVNRVADGFHARVVQHECDHLIGRLYPSRIQDFAKFGYTEVL 169


>gi|255325809|ref|ZP_05366901.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
 gi|311740109|ref|ZP_07713942.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|255297021|gb|EET76346.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
 gi|311304805|gb|EFQ80875.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 207

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 20/185 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P+VI  + +L   ++P+E+      ++  LI +M E M + +G+GLAA Q+G+  R
Sbjct: 1   MTIRPIVIHGETVLHEPTQPVEESEISTPEMQQLIADMYETMDAANGVGLAANQVGIGKR 60

Query: 58  LVVIDLQDHAHRK-----------------NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           L V    D                      NP++  +    T   D     EGCLS+P  
Sbjct: 61  LFVYHCPDTDGPNGTELPSEEAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                R+ +  V   D N     +   G  A CLQHE  HL+G L+ D L    +    K
Sbjct: 121 GFPTGRADWARVTGKDENGNDISVEGYGFFARCLQHETGHLDGFLYTDTLIGRYKRQAKK 180

Query: 161 KMSKL 165
            + + 
Sbjct: 181 AIKRH 185


>gi|254457336|ref|ZP_05070764.1| peptide deformylase [Campylobacterales bacterium GD 1]
 gi|207086128|gb|EDZ63412.1| peptide deformylase [Campylobacterales bacterium GD 1]
          Length = 174

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 105/167 (62%), Gaps = 4/167 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PD IL+++S  +EK + ++ +L+D M  +M  T+GIGLAA+Q+    +++++++ +
Sbjct: 5   IVEYPDKILKQISEKVEKFDKELHDLLDAMYPIMVKTNGIGLAAIQVARPKQVLILNIPE 64

Query: 66  HAHR---KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                  +N +  +NP I+    +  VYQEGCLS+P +  D+ R   ITV Y D +A  +
Sbjct: 65  EDGEQPIENLIEMVNPIIVKKDGEI-VYQEGCLSVPSFYEDIIRFENITVNYQDRDANTK 123

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + A+GLL+  +QHE+DHL GILFID LS  +R    K+  ++ + +
Sbjct: 124 TLEANGLLSVAIQHEIDHLKGILFIDKLSYARRKKFEKEYKRMQKEK 170


>gi|323356569|ref|YP_004222965.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
 gi|323272940|dbj|BAJ73085.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
          Length = 163

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  S PIE I+  I  L+ ++L+ +      G+AA QIGV  R   
Sbjct: 1   MTVRPIRLFGDPVLRAPSAPIETIDDGIHALVRDLLDTVEPPGRAGVAAPQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP ++    +  +  EGCLS+P    +  R  +  V  +D +  
Sbjct: 61  YNIDGDIGY-----VLNPVLVETRGEPQLVGEGCLSVPGLWHEATRYPWAKVVGIDLDGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++  +GLLA  LQHE DHL+G+L++  L    R    +++ +
Sbjct: 116 EVVLEGEGLLAQALQHETDHLDGMLYLSRLPADTRREAMRQIRE 159


>gi|302544000|ref|ZP_07296342.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302461618|gb|EFL24711.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 205

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            + + +  + +L R  + +      ++  LID+M   MY  DG GLAA Q+GV  RL V 
Sbjct: 17  VRRITVVGEEVLSRPCQEVTTFGTPELAALIDDMFLTMYVADGAGLAANQVGVDLRLFVY 76

Query: 62  DLQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +              EGCLS+P     V R+    VR  D +
Sbjct: 77  DCPDETGARHVGHILNPVLDLPDPGDRRLVDDIEGCLSVPGAAMAVPRTDRAVVRGFDKD 136

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               +I   G  A CLQHE DHL G L++D LS+  R    ++M +
Sbjct: 137 GNPLVIEGQGYFARCLQHETDHLMGHLYLDRLSQRDRKDALRQMEE 182


>gi|294500984|ref|YP_003564684.1| peptide deformylase [Bacillus megaterium QM B1551]
 gi|294350921|gb|ADE71250.1| peptide deformylase [Bacillus megaterium QM B1551]
          Length = 157

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  LV  P+ +L +    ++  ++ +  L++ M ++M   DG+GLAA Q+GVL ++ V
Sbjct: 1   MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R   +  INP II    +  +  EGCLS P    DV R+ ++ V   +   +
Sbjct: 61  VDVDD---RHGKIELINPVIIEQRGE-QIGPEGCLSFPGLFGDVARADYVKVHAQNRKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I A G LA  +QHE+DHL+G+LF + +++
Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148


>gi|302878431|ref|YP_003846995.1| peptide deformylase [Gallionella capsiferriformans ES-2]
 gi|302581220|gb|ADL55231.1| peptide deformylase [Gallionella capsiferriformans ES-2]
          Length = 175

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++   D  L  V++P+    S + +++++M + M++ +G GLAA QIGV  R+V+
Sbjct: 1   MAIKPVLRMGDARLLEVAKPVTDF-SALQDVLNDMQDTMHALNGAGLAAPQIGVGLRVVI 59

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++++   +       V INP +    D      EGCLS+P  R  V R   I  + +
Sbjct: 60  FGVEENSRYPDAESVPYTVLINPVVTPIDDLMEDDWEGCLSVPGLRGRVARYHAIRYQGV 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           D           G  A  +QHE DHL+G+L+   ++ L+
Sbjct: 120 DAKGAPIDRSVSGFHARVVQHECDHLDGVLYPMRMTDLR 158


>gi|239917470|ref|YP_002957028.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|281414039|ref|ZP_06245781.1| peptide deformylase [Micrococcus luteus NCTC 2665]
 gi|239838677|gb|ACS30474.1| peptide deformylase [Micrococcus luteus NCTC 2665]
          Length = 213

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 7/167 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M   +P+ ++ +P+L R +  +E I+ +I  LI++M     +  G+GLAA Q+GV  R+ 
Sbjct: 1   MASIRPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAASQVGVGLRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDD------FSVYQEGCLSIPDYRADVKRSAFITVR 113
                D     N    INP +               + EGCLS+P     ++R   + + 
Sbjct: 61  TWTFPDSGDAPNVGHVINPVLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
               + +     A+G  A  +QHE DHLNG L+++ L    +    +
Sbjct: 121 GQRVDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEGKWQRRWKR 167


>gi|313681059|ref|YP_004058798.1| peptide deformylase [Oceanithermus profundus DSM 14977]
 gi|313153774|gb|ADR37625.1| peptide deformylase [Oceanithermus profundus DSM 14977]
          Length = 199

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 19/186 (10%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    P+ ++ DP+LR+ +RP++   SD+  L +NM+E M+   G+GLAA Q+G+  RL 
Sbjct: 1   MAEVLPIRLYGDPVLRKKARPVQDF-SDLEELAENMVETMFEYGGVGLAAPQVGLSRRLF 59

Query: 60  VIDL--------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADV 104
           V                 +  +  +N  V +NP+I T  +   V  EGCLSIP  Y  DV
Sbjct: 60  VAAEYALEEEEAEADEEERPKSALRNLYVMVNPRI-THREGTQVGTEGCLSIPGVYSDDV 118

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS- 163
            R   I V Y D     + + A+G LA  +QHELDHL G+LF+D +    R    ++   
Sbjct: 119 PRDLQIRVEYQDVTGAPRTLEAEGYLARVIQHELDHLEGVLFLDRIPAELRRAFLEEHRA 178

Query: 164 KLVQLR 169
           +L +++
Sbjct: 179 ELAEMQ 184


>gi|148240675|ref|YP_001226062.1| peptide deformylase [Synechococcus sp. WH 7803]
 gi|147849214|emb|CAK24765.1| Peptide deformylase [Synechococcus sp. WH 7803]
          Length = 177

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++    P LR+ +R IE        +  LID++LE   +  G GLAA QI   +R
Sbjct: 1   MTIRAVLRLGHPALRQRARDIEDEVFGTQQLQTLIDDLLETKAARSGAGLAAPQIDEPWR 60

Query: 58  LVVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +VV+ +        A      V INP+I   S+  S   EGCLS+P  R +V+R   I +
Sbjct: 61  VVVVGMGANPRYPEAPPVPERVLINPEITPLSEATSAGWEGCLSVPGLRGEVERWQRIHL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            + D N        +G  A  +QHE DHL+G+LF D L          ++ 
Sbjct: 121 SWRDPNGGWHHEELEGFHARVVQHECDHLDGVLFPDRLRDPTAFGFEAELQ 171


>gi|31791607|ref|NP_854100.1| peptide deformylase [Mycobacterium bovis AF2122/97]
 gi|39930833|sp|Q7U206|DEF_MYCBO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|31617193|emb|CAD93300.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE
           DEFORMYLASE) [Mycobacterium bovis AF2122/97]
          Length = 197

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+          D+  LI  M + M + +G+GLAA QIG  
Sbjct: 1   MTVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60

Query: 56  YRLVVIDL--QDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D         +   V INP     +I     D     EGCLS+P       R+ 
Sbjct: 61  LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     I   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRL 162


>gi|255525653|ref|ZP_05392586.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296185413|ref|ZP_06853823.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255510639|gb|EET86946.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296050247|gb|EFG89671.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 151

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 94/154 (61%), Gaps = 6/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  + D +LR+ SR +E I+  I+ L+D+M E MY  DG+GLA  Q+G+L R+VV
Sbjct: 1   MALRNIRKYGDDLLRKKSRKVENIDDRIVTLLDDMAETMYDADGVGLAGPQVGILKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      INP+II+    + + +EGCLS+P  +  V+R   + V+ ++   +
Sbjct: 61  IDVGEGILK-----LINPEIISTEGSY-IDEEGCLSVPGEQGKVERPYKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             I+  + LLA  L HE+DHL GILF+D + + +
Sbjct: 115 EIIVEGEELLARALCHEIDHLEGILFVDKILKTE 148


>gi|126699364|ref|YP_001088261.1| peptide deformylase 1 [Clostridium difficile 630]
 gi|254975393|ref|ZP_05271865.1| peptide deformylase 1 [Clostridium difficile QCD-66c26]
 gi|255092782|ref|ZP_05322260.1| peptide deformylase 1 [Clostridium difficile CIP 107932]
 gi|255100892|ref|ZP_05329869.1| peptide deformylase 1 [Clostridium difficile QCD-63q42]
 gi|255314522|ref|ZP_05356105.1| peptide deformylase 1 [Clostridium difficile QCD-76w55]
 gi|255517197|ref|ZP_05384873.1| peptide deformylase 1 [Clostridium difficile QCD-97b34]
 gi|255650303|ref|ZP_05397205.1| peptide deformylase 1 [Clostridium difficile QCD-37x79]
 gi|255655776|ref|ZP_05401185.1| peptide deformylase 1 [Clostridium difficile QCD-23m63]
 gi|260683417|ref|YP_003214702.1| peptide deformylase 1 [Clostridium difficile CD196]
 gi|260687013|ref|YP_003218146.1| peptide deformylase 1 [Clostridium difficile R20291]
 gi|296450989|ref|ZP_06892736.1| peptide deformylase 1 [Clostridium difficile NAP08]
 gi|296879045|ref|ZP_06903041.1| peptide deformylase 1 [Clostridium difficile NAP07]
 gi|306520272|ref|ZP_07406619.1| peptide deformylase [Clostridium difficile QCD-32g58]
 gi|115250801|emb|CAJ68625.1| Peptide deformylase 1 (PDF 1) (Polypeptide deformylase 1)
           [Clostridium difficile]
 gi|260209580|emb|CBA63212.1| peptide deformylase 1 [Clostridium difficile CD196]
 gi|260213029|emb|CBE04369.1| peptide deformylase 1 [Clostridium difficile R20291]
 gi|296260207|gb|EFH07055.1| peptide deformylase 1 [Clostridium difficile NAP08]
 gi|296429918|gb|EFH15769.1| peptide deformylase 1 [Clostridium difficile NAP07]
          Length = 151

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + +  F D ILR+ S+ +E +++ I  ++++M E MY+T  G GLAA Q+GVL RLV
Sbjct: 1   MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +       +  +NP+II    +  V  EGCLS P+    +KR   +TV+ ++   
Sbjct: 61  VIDLGE-----GLIKLVNPEIIKQEGEQIVV-EGCLSFPEVWGKLKRPKKVTVQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +   I   G +A CL HE+DHLNGI+F D +
Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145


>gi|283457827|ref|YP_003362425.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
 gi|283133840|dbj|BAI64605.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
          Length = 214

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR V  PI   + D+  LID+MLE MY   G+GLA  Q+G+  ++  
Sbjct: 17  MTILSIRTVGDPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFT 76

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          INP +    +D    + GCLS+P  ++   R  +  V  +D + +
Sbjct: 77  FGGIDDRE----GYIINPVLEVGEEDQEGGE-GCLSVPGQKSATPRKNWARVTGVDRHGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++  +GL A  LQHE DHL+G LFID L    R  + + +  
Sbjct: 132 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRQRVMRALRA 175


>gi|227834098|ref|YP_002835805.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227455114|gb|ACP33867.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 210

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  +P+VI  DP+L   + P+ +   + ++  LI +M E M +  G+GLAA QIGV  RL
Sbjct: 7   MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 66

Query: 59  VVIDLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            V    D                    NP++  +    T   D     EGCLS+P     
Sbjct: 67  FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 126

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             R+ +  V   +   +   I   G  A  LQHE  HL+G ++ D L+   +    K + 
Sbjct: 127 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKRQAKKAIK 186

Query: 164 K 164
           +
Sbjct: 187 R 187


>gi|95931365|ref|ZP_01314077.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
 gi|95132581|gb|EAT14268.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
          Length = 166

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 99/166 (59%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + ++++PDP L+ V RP E  ++D   L+ ++++ MY +   +G+AA QIG+  R+ 
Sbjct: 1   MAVREVLVYPDPRLKEVCRPAEVGHADTAALVQDLIDTMYDSGHSVGIAAPQIGICQRVA 60

Query: 60  VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+        H    +  +NP II  +    V +EGC+S+PDY  +V+R+  I V++ 
Sbjct: 61  VVDVSNSKLGKKHNHGLVTMVNPTIIESTGSK-VMREGCMSVPDYTGNVERAREIVVQFY 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           D   Q Q++   G  A  +QHELDHL+G+LF+D +S  K D+  +K
Sbjct: 120 DQEGQDQVMRCKGFEAVAIQHELDHLDGLLFLDRVSNPKADIFKRK 165


>gi|189423599|ref|YP_001950776.1| peptide deformylase [Geobacter lovleyi SZ]
 gi|189419858|gb|ACD94256.1| peptide deformylase [Geobacter lovleyi SZ]
          Length = 169

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 106/167 (63%), Gaps = 7/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M  +P++ +P P+L++++  +  ++  I  L+ ++++ M +  G +G+AA QIGV  R+ 
Sbjct: 1   MAVQPILKYPHPLLKKMAHRVAALDEPIHTLVQDLIDTMQAGPGSVGVAAPQIGVGLRVC 60

Query: 60  VIDLQDHAHRKN----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           V+D+ +  H K+     +  +NP+II+ S   +V +EGC+S+PDY  DV+R+  ITVR++
Sbjct: 61  VVDVSNSRHGKDNNHGLLCMVNPEIISRSG-LAVMREGCMSVPDYTGDVERATEITVRFL 119

Query: 116 D-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           D  + Q + + A G  A  +QHE+DHL+G+LF+D +  +   +  +K
Sbjct: 120 DSRSGQQREVAASGFEAVAIQHEMDHLDGLLFLDRIISVSTGLFRRK 166


>gi|295111635|emb|CBL28385.1| peptide deformylase [Synergistetes bacterium SGP1]
          Length = 182

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 6/160 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +  +PDP+L++V+ P+   + ++ + +  M  VM  +DG+GLAA Q+GVL ++ V+D +
Sbjct: 25  EVRRYPDPVLKKVAEPVTVFDDELADFVGKMRTVMRVSDGVGLAAPQVGVLRQIAVVDYK 84

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           + A+       INP+++         +EGCLS P   A V+R  ++ V   D   +  + 
Sbjct: 85  EEAYD-----LINPRVLEQ-GGEQEGEEGCLSFPGIYAMVRRPEWVRVEAQDVRGEVHVH 138

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            A G LA    HE+DHLNG LFID+LS LKR  I +KM K
Sbjct: 139 EASGFLARAFLHEMDHLNGKLFIDYLSPLKRGAIRRKMMK 178


>gi|306820768|ref|ZP_07454393.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551158|gb|EFM39124.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 166

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR--- 57
           M  + L I  DP+LR+VSR + +++  I  LI++M++ M   DG+GLAA Q+GVL R   
Sbjct: 1   MGIRNLRIDGDPLLRKVSREVTELSDKIRLLIEDMMDTMTENDGVGLAAPQVGVLKRVIV 60

Query: 58  -----LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                +    L+D      P+  INP II    +  V QEGCLS+P+   DVKR + I V
Sbjct: 61  VDVSDVDPEVLKDENAPDEPIALINPVIIEKDGE-EVGQEGCLSVPNLTGDVKRPSRIVV 119

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
           +  +   +  +  A    A  L HE+DHLNG+L+ID    L+  
Sbjct: 120 KAKNEKFEDVVFEAKHFFARVLCHEIDHLNGVLYIDKAENLRER 163


>gi|261856616|ref|YP_003263899.1| peptide deformylase [Halothiobacillus neapolitanus c2]
 gi|261837085|gb|ACX96852.1| peptide deformylase [Halothiobacillus neapolitanus c2]
          Length = 166

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M    ++ +PD  L+    P++  N ++ + ID+++E      G +G+AA Q+GVL R+ 
Sbjct: 1   MASLEILTYPDERLKTGCEPVDTFNPEMQSFIDHLIETCSGGPGAVGIAAPQVGVLQRIC 60

Query: 60  VIDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           ++D        +    +V INP+I  + D F+V +EGCLS+PDY   V R+  I ++  D
Sbjct: 61  IVDATRARRPVDNHGHLVLINPEITAW-DGFAVGREGCLSVPDYTGKVIRAEKIELKAQD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRD 156
            N +       G  A   QHE+DHL+GILF+D L    + LKR 
Sbjct: 120 RNGKPCTFTMSGFEARIAQHEVDHLDGILFLDRLVSRHADLKRR 163


>gi|283783275|ref|YP_003374029.1| peptide deformylase [Gardnerella vaginalis 409-05]
 gi|297243498|ref|ZP_06927430.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
 gi|283441016|gb|ADB13482.1| peptide deformylase [Gardnerella vaginalis 409-05]
 gi|296888543|gb|EFH27283.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
          Length = 162

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR     I +I   + +L+D++LE +      GL+A QIGV +R   
Sbjct: 1   MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP I     +     EGCLS+P      +R+ +   R +D + +
Sbjct: 61  YNINGRIGY-----ILNPVIEELKGE-QYDDEGCLSVPGLWYKTRRANYARARGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++  +GL+A  +QHE DHL+G +++D L +  R    +++   ++
Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLDRLEKDVRRQALRELRNNMR 161


>gi|220927497|ref|YP_002504406.1| peptide deformylase [Clostridium cellulolyticum H10]
 gi|219997825|gb|ACL74426.1| peptide deformylase [Clostridium cellulolyticum H10]
          Length = 151

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +    D +LR+  RP++++N  +  L+ +M + MY+T +G GLAA Q+G+L R+V
Sbjct: 1   MALRNIRTLDDEVLRKKCRPVDEVNDKVRELLKDMADTMYNTGNGAGLAAPQVGILKRIV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D       +  +NP+I+       V  EGCLSI      V R   + V+ ++   
Sbjct: 61  VIDMGD-----GLINLVNPEIVEQKGSQEVI-EGCLSILGKWGKVIRPTEVKVKALNEKG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  II     +A CL HE+DHL+GILF D ++ 
Sbjct: 115 EEVIITGKKDMAKCLCHEIDHLDGILFTDKVTE 147


>gi|262091714|gb|ACY25304.1| peptide deformylase [uncultured actinobacterium]
          Length = 175

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 6/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + ++ DP+L+ ++  I  I+  +++L +NML +MY   G+GLA  QIGV  ++ V D+ D
Sbjct: 7   IRVYGDPVLKTLAASITNIDGKLVSLAENMLHIMYEAPGLGLAGPQIGVQKQIFVYDVDD 66

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                +P V +NP I+  S +  VY EGCLSIP    ++ R   + VR +        + 
Sbjct: 67  -----DPQVILNPTIVESSGE-WVYDEGCLSIPGLFVEMLRPKEVLVRGLTLEGDEIEVE 120

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           AD LLA   QHE+DHL G+L  D +   +R +   +  K  +
Sbjct: 121 ADELLARLFQHEIDHLQGVLMFDRMLPDQRKIALNEYQKHEK 162


>gi|203283991|ref|YP_002221731.1| polypeptide deformylase [Borrelia duttonii Ly]
 gi|203287534|ref|YP_002222549.1| polypeptide deformylase [Borrelia recurrentis A1]
 gi|201083434|gb|ACH93025.1| polypeptide deformylase [Borrelia duttonii Ly]
 gi|201084754|gb|ACH94328.1| polypeptide deformylase [Borrelia recurrentis A1]
          Length = 165

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PD +LR  ++ +E I+ ++ ++I  M+ +M  + G+GLAA Q+G+   + V+   
Sbjct: 2   EIVFYPDDLLRVQTKDVENIDDELRSIIFEMIGLMDKSKGVGLAAPQVGLDLSIFVV--- 58

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP I + S + SVY+EGCLSIP    D+ R   I +   D N +   I
Sbjct: 59  RKNMMSKPLVFINPVITSKSVELSVYKEGCLSIPGVYYDLSRPKSIVIEAYDENGKFFKI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               +LA  +QHE+DHL G+LFID+     R+ + K   K  +L
Sbjct: 119 EDLDILARIIQHEMDHLKGVLFIDYYEDKLRNKLLKSYLKERRL 162


>gi|307329984|ref|ZP_07609136.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306884360|gb|EFN15394.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 212

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 4/169 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           + +    + ILRR  R + +    ++  LID+M   MY  +G GLAA Q+ V  RL V D
Sbjct: 26  RRITEVGEEILRRSCREVTEFGTPELSALIDDMFLTMYIAEGAGLAANQVDVELRLFVYD 85

Query: 63  LQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             D    ++    INP +              EGCLS+P  R DV R+    VR +D + 
Sbjct: 86  CPDDNGVRHVGHIINPVLDQPDPAERLLIEDAEGCLSVPGARMDVPRTDRTVVRGVDKDG 145

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +I   G  A CLQHE DHL+G L+ID LS+  R    ++M+ L + 
Sbjct: 146 NPLVIEGTGYFARCLQHEADHLSGHLYIDRLSKRDRKDALRQMTDLHEQ 194


>gi|296331148|ref|ZP_06873622.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674303|ref|YP_003865975.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151792|gb|EFG92667.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412547|gb|ADM37666.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 160

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R+ V
Sbjct: 1   MAVKKVVTHPAEVLETPTESVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D++ R +    +NP+I+  S +     EGCLS P    DV R+ ++ VR  +   +
Sbjct: 61  VDIGDNSGRID---LVNPEILEKSGE-QTGIEGCLSFPGVYGDVTRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|328951365|ref|YP_004368700.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
 gi|328451689|gb|AEB12590.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
          Length = 197

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 15/181 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              P+ ++ DPILRR + P+E  +  I  L +N+ E M+   G+GLAA Q+G+  RL V 
Sbjct: 6   TIYPIRLYGDPILRRRALPVEAFD-GIPELAENLFETMFEAGGVGLAAPQVGISRRLFVA 64

Query: 62  DLQDHA-----------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAF 109
                              K   V +NP I T+ +   V  EGCLS+P  Y  +V R   
Sbjct: 65  AEYLDEEEEAEDTPLKSRVKQLYVMVNPVI-TYREGHQVGTEGCLSLPGLYSDEVPRDLR 123

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS-KLVQL 168
           + V+Y D   + +++ A+G LA  +QHELDHL G LFID L    R     +   +L ++
Sbjct: 124 VRVQYQDEYGEPKVLEAEGYLARVIQHELDHLEGKLFIDRLPPEARRAFINEHRAELAEM 183

Query: 169 R 169
           +
Sbjct: 184 Q 184


>gi|302387077|ref|YP_003822899.1| peptide deformylase [Clostridium saccharolyticum WM1]
 gi|302197705|gb|ADL05276.1| peptide deformylase [Clostridium saccharolyticum WM1]
          Length = 163

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 8/154 (5%)

Query: 1   MVKKPLV--IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + +      + ILR+ ++ +E I++ ++ L+++M + MY  +G+GLAA Q+GVL RL
Sbjct: 1   MAYRNIRNNKENNTILRKQAKKVENIDNKVLTLLEDMADTMYQEEGVGLAAPQVGVLKRL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           VVID+         +  INP+I+  S       EGCLS+P    +V R   + ++  +  
Sbjct: 61  VVIDIG-----AGLIKLINPEIMEQSGQQQ-GMEGCLSVPGISGEVVRPQKVRIKAQNET 114

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +  +    LLA  + HE+DHLNG+LFID +  
Sbjct: 115 GAYFELEGTDLLARAICHEIDHLNGVLFIDKIVP 148


>gi|300784243|ref|YP_003764534.1| polypeptide deformylase [Amycolatopsis mediterranei U32]
 gi|299793757|gb|ADJ44132.1| polypeptide deformylase [Amycolatopsis mediterranei U32]
          Length = 166

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + L  F DPIL+ V  P+   +  +  L+ ++++ +      GLAA QIGV  R+  
Sbjct: 1   MAMRELRYFGDPILKSVCDPVTVFDEKLEALVRDLVDSVKPAGRAGLAAPQIGVGLRVFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+            +NP+I+  S++     EGCLS+P+     +R+    VR +D + +
Sbjct: 61  YDVAGLTGY-----VVNPEIVELSEETHEINEGCLSVPELWFPTRRAMHAKVRGVDVHNE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +  + +LA CLQHE DHL+G+L++D L+  ++    ++  
Sbjct: 116 PIEVEGEDVLAQCLQHETDHLDGVLYLDRLTAERKKSALREAR 158


>gi|257877734|ref|ZP_05657387.1| formylmethionine deformylase [Enterococcus casseliflavus EC20]
 gi|257811900|gb|EEV40720.1| formylmethionine deformylase [Enterococcus casseliflavus EC20]
          Length = 162

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 103/167 (61%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LRR ++P++ I  +++ L+D++ E M + DGIG+AA Q+G   ++ ++
Sbjct: 1   MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++++          INP+II  S + S+  EGCLSIP     VKR+  ITVRY D   + 
Sbjct: 61  EVEEDDR----FEMINPEIIASSGE-SLDVEGCLSIPHTFGTVKRADEITVRYFDREGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQ 167
             + A G LA  +QHE+DHLNG+LF+D L  R+  + + K M +  +
Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKLVERIPEEDLEKYMEEHEK 162


>gi|255527719|ref|ZP_05394575.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296187196|ref|ZP_06855593.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255508594|gb|EET84978.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296048231|gb|EFG87668.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 150

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ SR +E ++  I  ++++M E MY+T +G GLA  Q+G+L RLV
Sbjct: 1   MALRQIRLFGDEILRKKSREVEVVDDKIRQILNDMAETMYNTENGGGLAGPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D+         +  +NPKII       V  EGCLS P+    +KR A + V+ ++ N 
Sbjct: 61  VMDMGG-----GLIKLVNPKIIEQEGTQEVI-EGCLSSPNTWGKLKRPAKVKVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGSLAKCFCHEIDHLEGILFTDLVTE 147


>gi|153941088|ref|YP_001391920.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|170756373|ref|YP_001782237.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|152936984|gb|ABS42482.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|169121585|gb|ACA45421.1| peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|295319940|gb|ADG00318.1| peptide deformylase [Clostridium botulinum F str. 230613]
          Length = 178

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+   + + P++ INPK           +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|119509174|ref|ZP_01628325.1| polypeptide deformylase [Nodularia spumigena CCY9414]
 gi|119466340|gb|EAW47226.1| polypeptide deformylase [Nodularia spumigena CCY9414]
          Length = 177

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 6/153 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++   DP+LR+ +  +E   +  I  LID++   +   +G+G+AA Q+   YRL ++  
Sbjct: 6   PIIQLGDPVLRQKAAWVENTQDKYIQKLIDDLTVTVAQANGVGIAAPQVAASYRLFIVAS 65

Query: 64  QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +    N     P   INP+II  S +     EGCLS+P  R  V R   +T+ Y D N
Sbjct: 66  RPNLRYPNAPVMEPTAMINPRIIDHSTEIVKGWEGCLSVPGIRGLVPRYKHLTIAYTDRN 125

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + +       +A   QHE DHL+G++F+D + 
Sbjct: 126 GKFKKQELTDFVARIFQHEYDHLDGVVFVDRVE 158


>gi|108762860|ref|YP_635455.1| peptide deformylase [Myxococcus xanthus DK 1622]
 gi|108466740|gb|ABF91925.1| peptide deformylase [Myxococcus xanthus DK 1622]
          Length = 168

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +VI+P  +L   ++P+      +  L++ M E M   +GIG+AA Q+G   R+ +
Sbjct: 1   MA-RDIVIWPHKVLTSSTKPVTDFGPPLETLLEQMAESMKEAEGIGIAANQVGESLRVAL 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +  +D          +NP+I+    +    +EGCLS+P       R   + VRY D +A+
Sbjct: 60  VGRED----GTFFEIVNPQILEKK-EPVTMEEGCLSVPREWEKCPRFHKVKVRYQDKSAE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+G LA  LQHE+DHL+G +F+DHLS LKR +I  +M KL +++
Sbjct: 115 WHELEAEGRLAHVLQHEIDHLDGHVFVDHLSSLKRTLILDRMKKLQKVK 163


>gi|160933492|ref|ZP_02080880.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753]
 gi|156867369|gb|EDO60741.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753]
          Length = 162

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 4/146 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   D IL +  RP+EK +  +  L+D+M E +   +G+GLAA Q+G+L R+V+
Sbjct: 1   MAIRNIVKEGDGILGKKCRPVEKFDPKLWMLLDDMKETLREANGVGLAAPQVGILRRVVI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ D          INP+I+  S +     EGCLS P     V+R + + V+  +   +
Sbjct: 61  VNIGDEDGDIE---LINPEIVEASGE-QDGPEGCLSCPGEWGMVRRPSHVVVKAQNRRGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
              I  + L A    HELDHL GILF
Sbjct: 117 FFEITGEELKARAFCHELDHLEGILF 142


>gi|254468385|ref|ZP_05081791.1| peptide deformylase [beta proteobacterium KB13]
 gi|207087195|gb|EDZ64478.1| peptide deformylase [beta proteobacterium KB13]
          Length = 162

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 75/161 (46%), Gaps = 5/161 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DL 63
             +P L +VS P++    D+  LID+M E M + DG GLAA QIGV  RLV+      D 
Sbjct: 1   MGNPELLKVSEPVDFEKEDLTTLIDDMKETMKANDGAGLAAPQIGVFKRLVIFGFDTNDR 60

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
              A      V INP I   SD+     EGCLS+P  R  V R   I     D       
Sbjct: 61  YPEADSVPFTVLINPIITPLSDEKENGWEGCLSVPGLRGVVPRFTHIKYEGYDAEGNKIE 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   A  +QHE DHL+GIL+   +   +     +++ K
Sbjct: 121 REVEDFHARVVQHECDHLDGILYPMKIEDYRYFGFHEEIFK 161


>gi|315651132|ref|ZP_07904164.1| peptide deformylase [Eubacterium saburreum DSM 3986]
 gi|315486597|gb|EFU76947.1| peptide deformylase [Eubacterium saburreum DSM 3986]
          Length = 174

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D +L +  + ++++N     LI++M+E M    G+GLAA QIGVL R+VV
Sbjct: 9   MAIRAIRVMGDNVLNKKCKEVKEVNDRTKILIEDMIETMREAGGVGLAAPQIGVLKRIVV 68

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+ +      N  V INP II    +  V  EGCLS+P     VKR  ++  +  D +  
Sbjct: 69  IETEP----DNVHVLINPVIIKQDGE-QVGYEGCLSVPGKSGIVKRPNYVAAKAFDIDMN 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  +GLLA  + HE  HL+G L++D +     D   +++ K+ +  
Sbjct: 124 EYTIEGEGLLARAICHECAHLDGELYVDLVEGELID--NEELEKMQKEE 170


>gi|153933577|ref|YP_001384865.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|153936131|ref|YP_001388335.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|152929621|gb|ABS35121.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|152932045|gb|ABS37544.1| peptide deformylase [Clostridium botulinum A str. Hall]
          Length = 178

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+   + + P++ INPK           +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|150018308|ref|YP_001310562.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
 gi|149904773|gb|ABR35606.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
          Length = 150

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 7/156 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +F D +LR+ S+ +E ++  I  ++D+M+E MY+T +G GLAA QIG+L RLV
Sbjct: 1   MALRKIRLFGDEVLRKKSKEVEVVDEKIRQILDDMVETMYNTENGGGLAAPQIGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLS P     + R   +TV+ +D N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGSQEVI-EGCLSNPHVFGRLLRPEKVTVQALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +  I+   G LA C  HE+DHL GILF D ++   +
Sbjct: 115 KEIILTGTGDLAKCFCHEIDHLEGILFTDFVTEYLK 150


>gi|220906351|ref|YP_002481662.1| peptide deformylase [Cyanothece sp. PCC 7425]
 gi|219862962|gb|ACL43301.1| peptide deformylase [Cyanothece sp. PCC 7425]
          Length = 190

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 6/170 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              +    +P+LR+ ++ + ++    I  LID++L  +   +G+GLAA Q+G  +++ ++
Sbjct: 15  VLDITQLGNPVLRQTAQFVPEVGHPQIQTLIDDLLVTVKQANGVGLAAPQVGASWQIFIV 74

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
             +      HA    P   INP+++  +D      EGCLSIP  R  V R   I V Y+D
Sbjct: 75  ASRPNPRYPHAPEMEPTAMINPRLLAHNDQQVKDWEGCLSIPGLRGLVPRYQGIEVEYLD 134

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              + +       +A   QHE DHLNG++F+D L      +  ++  KLV
Sbjct: 135 RRGKTRRQQLHDFVARIFQHEQDHLNGVVFLDRLETTLELVTEQEYQKLV 184


>gi|317056476|ref|YP_004104943.1| peptide deformylase [Ruminococcus albus 7]
 gi|315448745|gb|ADU22309.1| peptide deformylase [Ruminococcus albus 7]
          Length = 155

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L +V RP+EK +  +   +D+M E +   +G+GLAA Q+ +L R  +
Sbjct: 1   MAVRNILNKSDETLHKVCRPVEKFDEKLWTWLDDMKETLAQANGVGLAAPQVAILRRFCI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     N    INP+I   S++     EGCLS P     V R   +  +  D N +
Sbjct: 61  IDVGD----GNVYELINPEITWKSEETQRVLEGCLSCPGQWGYVTRPMSVKFKAQDRNGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +    L A  + HE  HL+G LF + +   
Sbjct: 117 WYEMEVSELFAQAVCHETAHLDGHLFTEIVEEF 149


>gi|225850189|ref|YP_002730423.1| peptide deformylase [Persephonella marina EX-H1]
 gi|225646575|gb|ACO04761.1| peptide deformylase [Persephonella marina EX-H1]
          Length = 176

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 5/170 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   +  +PD IL++  + ++  +   +   +D M + MY  DG+GLAA QIG+ YR++V
Sbjct: 1   MTYEIRTWPDKILKQKMKEVDFFSDGKLKEYVDVMFKKMYELDGVGLAANQIGIPYRIIV 60

Query: 61  IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ID    ++   +   +V INP+I+    +     EGCLS P  +  + R+  + V+  D 
Sbjct: 61  IDTTVREEEGEKGVKLVLINPQIVEKEGEIEST-EGCLSFPGVQITIPRAERVKVKAKDI 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           N     I     L+  LQHE+DH+NGI FI++L  +K+ M+ +K  K  +
Sbjct: 120 NGNDIEIEGKDFLSVVLQHEIDHINGIPFINYLPPVKKRMVLEKYMKSRK 169


>gi|229541139|ref|ZP_04430199.1| peptide deformylase [Bacillus coagulans 36D1]
 gi|229325559|gb|EEN91234.1| peptide deformylase [Bacillus coagulans 36D1]
          Length = 161

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+   +V +P  IL    + +    S +  ++D M E M   DG+GLAA Q+G+  ++ V
Sbjct: 1   MM--EIVKYPAAILEEKCKRVTAFGSSLKAVLDEMYETMLEADGVGLAAPQVGINQQIAV 58

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  D   R +    INPKI+T   +     EGCLS P     V R+ ++ V+  D N +
Sbjct: 59  IDTGDGTGRID---LINPKIVTRRGE-QTDVEGCLSFPGVYGTVSRAHYVKVKAQDANGR 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              I A+  LA  LQHE+DHL+G+LF   +
Sbjct: 115 AFTIEAEDFLARALQHEIDHLHGVLFTSKI 144


>gi|241608057|ref|XP_002405931.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|215500709|gb|EEC10203.1| polypeptide deformylase, putative [Ixodes scapularis]
          Length = 164

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D +L+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10  IVYAPNDIFKKQAEYIDIVDDNIRTIVDKILQTLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
           + ++ + + FINP+I  FS++   + EG LS P   A + RS  I V+Y+D N   Q + 
Sbjct: 70  N-NKSSTIAFINPEITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           A+G LAT +QHE+D+LNG  F+D+LS+LKRD + KK
Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKK 164


>gi|331269019|ref|YP_004395511.1| peptide deformylase [Clostridium botulinum BKT015925]
 gi|329125569|gb|AEB75514.1| peptide deformylase [Clostridium botulinum BKT015925]
          Length = 159

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V   + +LRR S+ IE I+ +++ LI ++ + +YS DG+GLAA QIGVL R  +
Sbjct: 1   MAIKDIVTTENKLLRRKSKRIESIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+D      P++ +NPKI+     +    EGCLS P Y   V R   + V  ++   +
Sbjct: 61  IDLRDGNG---PLILLNPKILKKIGKYEDG-EGCLSYPGYEGIVVRPRKVIVSGINEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GL+A  + HE DHL+GIL++D   ++ +
Sbjct: 117 SAQYEATGLMARAICHETDHLDGILYMDLAKKMYK 151


>gi|29840076|ref|NP_829182.1| peptide deformylase [Chlamydophila caviae GPIC]
 gi|33301049|sp|Q823U4|DEF_CHLCV RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|29834424|gb|AAP05060.1| polypeptide deformylase [Chlamydophila caviae GPIC]
          Length = 186

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 7/173 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L  +   ILRR +  I +I      L+ +M E M +  G+GLAA Q+G    L V+
Sbjct: 1   MIRELEYYGSHILRRKADIIPEITDATRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVM 60

Query: 62  DLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            ++      +      P V+INP +   S+D  + +EGCLSIP  RADV R   ITV  +
Sbjct: 61  CVEGETEEGDLIFCDFPKVYINPVLSNPSEDLVIGREGCLSIPGLRADVYRPQSITVTAV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167
           + + Q    + +G  A  + HE DHL+G+L+ID +   K        + K+ +
Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLHGVLYIDKMEEPKDIKKFKASLEKIRR 173


>gi|320530181|ref|ZP_08031251.1| peptide deformylase [Selenomonas artemidis F0399]
 gi|320137614|gb|EFW29526.1| peptide deformylase [Selenomonas artemidis F0399]
          Length = 156

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+L++V+ PI+++      L+D+M E MY+++G+GLAA QIG   R+VV
Sbjct: 1   MAVLEIKKAGDPVLKQVAEPIDRLTKRHRQLLDDMAETMYASNGVGLAAPQIGKSIRMVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++D       +  +NP I T  +   V  EGCLS+P    DV+R+A +TV Y D  ++
Sbjct: 61  IDVED---EHGLLELVNPVI-TMREGSVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + + A+GLLA C+QHE DHL+G LFID
Sbjct: 117 RRSLTAEGLLARCIQHECDHLDGRLFID 144


>gi|315226589|ref|ZP_07868377.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105]
 gi|315120721|gb|EFT83853.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105]
          Length = 176

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + + I PDP+LR V  PI  I   + NL+ ++L+ +      GL+A QIGV  R    
Sbjct: 15  TIRDIRIVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFSY 74

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++            +NPKI+  S +     EGCLS+P      +R+ +  V  +D + + 
Sbjct: 75  NIDGKVGY-----VLNPKIVARSGE-QYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGKK 128

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            ++   G++   LQHE DHL+G +++D L + +R    + M +  +
Sbjct: 129 IVLEGKGIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRRQQK 174


>gi|322806950|emb|CBZ04520.1| peptide deformylase [Clostridium botulinum H04402 065]
          Length = 178

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAVTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+   + + P++ INPK           +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|88704771|ref|ZP_01102484.1| Peptide deformylase [Congregibacter litoralis KT71]
 gi|88701092|gb|EAQ98198.1| Peptide deformylase [Congregibacter litoralis KT71]
          Length = 169

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 3/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR  S  + + +  +   ++++ E +  +  IGL+A Q G+  R++V
Sbjct: 1   MAILDIIEVPDERLREHSEAVSRFDEALQQQVNDLFETLGHSGAIGLSAPQTGIFKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + + D        V+INP+I+  S    V +E CLS+P    +V R   + +R  D + +
Sbjct: 61  VHVPDDD--FGARVYINPEILKRSKSRYV-EESCLSVPGIEGNVVRCIRVKLRAQDIHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
                 D L A C+QHE+DHL+GILF D LS  K+  + 
Sbjct: 118 LCEFDVDDLHAVCVQHEVDHLDGILFTDRLSWFKKLRLR 156


>gi|163785969|ref|ZP_02180417.1| peptide deformylase [Flavobacteriales bacterium ALC-1]
 gi|159877829|gb|EDP71885.1| peptide deformylase [Flavobacteriales bacterium ALC-1]
          Length = 196

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + D +L++ ++ I+K    +  LI+NM E MY   G+GLAA QIG+  RL ++
Sbjct: 1   MILPIVAYGDAVLKKKAKDIDKDYPKLNELIENMYETMYGAYGVGLAAPQIGLPIRLFLV 60

Query: 62  DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D +  A             +     FIN +I+    D   + EGCLSIPD R DV R   
Sbjct: 61  DTEPFAEDESFSEEEQEQLKNFKKTFINAQILEEEGDEWAFNEGCLSIPDVREDVFRQPK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I ++Y D N +  I   DGL+A  +QHE DH+ G+LF D LS  K+ +I  K++ + + +
Sbjct: 121 IKIQYQDENFEIHIEEYDGLIARVIQHEYDHIEGVLFTDKLSSFKKRLIKGKLTNISKGK 180


>gi|152983750|ref|YP_001349601.1| peptide deformylase [Pseudomonas aeruginosa PA7]
 gi|150958908|gb|ABR80933.1| peptide deformylase [Pseudomonas aeruginosa PA7]
          Length = 179

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+   +    ++  LID+M E M    G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAPPVPAESFGSQELQRLIDDMFETMRHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +      +     P + +NP+I    D+     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAPAVPPTILLNPRITALDDEIEEGWEGCLSVPGLRGMVPRHRRIRYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D   +      +G  A  +QHE DHL G L+   ++   +   T+ +
Sbjct: 121 GVDPQGKPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFGKFGFTEVL 169


>gi|282863355|ref|ZP_06272414.1| peptide deformylase [Streptomyces sp. ACTE]
 gi|282561690|gb|EFB67233.1| peptide deformylase [Streptomyces sp. ACTE]
          Length = 219

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            + + +  + +L R  + +       +  LID+M   MY  DG GLAA Q+ V  RL V 
Sbjct: 37  VRRITVVGEEVLSRPCQEVTSFGSPGLAALIDDMFVTMYVADGAGLAANQVDVDLRLFVY 96

Query: 62  DLQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +      S       EGCLS+P     + R+   TVR  D +
Sbjct: 97  DCPDDQGVRHVGHIVNPVLDQPDPGSRRLVDDSEGCLSVPGASMTLPRTDRATVRGFDKD 156

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               +I   G  A CLQHE DHL G  ++D LS+  R    ++M +
Sbjct: 157 GNPLVIEGTGYFARCLQHESDHLVGHTYLDRLSKRDRKDALRQMEE 202


>gi|294790924|ref|ZP_06756082.1| peptide deformylase [Scardovia inopinata F0304]
 gi|294458821|gb|EFG27174.1| peptide deformylase [Scardovia inopinata F0304]
          Length = 162

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   PDPILR V  PI  I   I +L+ ++ + +      GL+A QIGV  R   
Sbjct: 1   MSIREIRCVPDPILRTVCDPITTITPAIRSLVRDLTDTVDDPGRAGLSANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +++           +NP+++  S +     EGCLS+P      +R+ +  V  +D N  
Sbjct: 61  FNIEGKVDY-----ILNPRLVKTSGE-QYGDEGCLSVPGLWYKTRRADYARVEGIDLNGH 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +++   GL+   LQHE DHL+G +++D L + +R    + M    +
Sbjct: 115 KKVLEGHGLMGRMLQHECDHLDGHVYLDRLEKEERRAALRYMRSRQK 161


>gi|50235447|gb|AAT70831.1| polypeptide deformylase [Borrelia hermsii]
          Length = 185

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PD +LR  ++ +  I+ ++ N+   M+ +M    G+GLAA Q+G+   + V+   
Sbjct: 22  EIVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVGLDLSIFVV--- 78

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP I   S + SVY+EGCLSIP    D+ R   ITV   D N +   I
Sbjct: 79  RENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKFFKI 138

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +  LLA  +QHE+DHL G+LFID+     R+ + K   K  +L
Sbjct: 139 ESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMKGRRL 182


>gi|218960357|ref|YP_001740132.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans]
 gi|167729014|emb|CAO79925.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans]
          Length = 186

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 96/165 (58%), Gaps = 3/165 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ ++ D  LR+    I+     +   I++++  MY+ DGIG+AA Q+G  YR++VID
Sbjct: 7   ILPVRLYGDDFLRKKLPEIDYNTPGLPEFIEDLIYTMYARDGIGIAANQVGSFYRMIVID 66

Query: 63  LQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +  +  ++K+P+V INP I     +  VY+EGC+S+PD  ADV RS  IT  Y D    
Sbjct: 67  PEQDNKLNKKSPIVMINPVIENKEGE-VVYEEGCISLPDIFADVSRSKKITYSYTDRMGN 125

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                A+ + A  +QHE DHL GILFIDHL  L R  I  K+ KL
Sbjct: 126 RITETAEEIKAVVIQHEFDHLEGILFIDHLGTLDRLKIMHKLKKL 170


>gi|57234458|ref|YP_181493.1| peptide deformylase [Dehalococcoides ethenogenes 195]
 gi|123759709|sp|Q3Z8F6|DEF_DEHE1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|57224906|gb|AAW39963.1| peptide deformylase [Dehalococcoides ethenogenes 195]
          Length = 167

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/155 (38%), Positives = 90/155 (58%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+PILR+ ++ +  I+  I  LID+M+E M S DG GLAA Q+GV  RL+V
Sbjct: 1   MAIRRICELPEPILRKKAKKVPSIDGSIQTLIDDMIETMKSADGAGLAAPQVGVSLRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D        V INP+I+       V  EGCLSIP Y  ++ R+  +T + +D + +
Sbjct: 61  FREPDAKEA---TVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              I   G++A  L+HE +HL+GIL+IDHL   ++
Sbjct: 117 AFRIKGTGVVAQLLEHETEHLDGILYIDHLESEEK 151


>gi|298252788|ref|ZP_06976582.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
 gi|297533152|gb|EFH72036.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
          Length = 162

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I PDP+LR     I +I   + +L+D++LE +      GL+A QIGV +R   
Sbjct: 1   MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP I     +     EGCLS+P      +R+ +     +D + +
Sbjct: 61  YNINGRIGY-----ILNPVIEELKGE-QYDDEGCLSVPGLWYKTRRANYARACGIDLDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++  +GL+A  +QHE DHL+G +++D L +  R    +++   ++
Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLDRLEKDVRRQALRELRNNMR 161


>gi|325680310|ref|ZP_08159870.1| peptide deformylase [Ruminococcus albus 8]
 gi|324108019|gb|EGC02275.1| peptide deformylase [Ruminococcus albus 8]
          Length = 155

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L +  +P+EK +  +   +D+M E +   +G+GLAA Q+ +L R  +
Sbjct: 1   MAVRKILNKSDETLHKKCKPVEKFDEKLWTWLDDMRETLAQANGVGLAAPQVAILRRFCI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          INP+I   S++     EGCLS P+    V R   +  +  D N +
Sbjct: 61  IDVGD----GKVYELINPEITWKSEETQYVLEGCLSCPNEWGYVTRPKSVKFKAQDRNGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +    L A  + HE  HL+G LF + +  
Sbjct: 117 WYEMEVSDLFAQAVCHETAHLDGHLFTEIIEE 148


>gi|149182344|ref|ZP_01860822.1| peptide deformylase [Bacillus sp. SG-1]
 gi|148849963|gb|EDL64135.1| peptide deformylase [Bacillus sp. SG-1]
          Length = 161

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +P+ IL    R + + +  +   +D+M + M + DG+GLAA Q+G    + +
Sbjct: 1   MAILPIVTYPNEILEIECRKVTEFDKKLRKFLDDMYDTMIAADGVGLAAPQVGKDIAVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D          +NP+++    +  +  EGCLS P+   +V R  ++ V + D   +
Sbjct: 61  VDIGDETGTIE---MVNPEVLEVRGE-QIDLEGCLSFPNLYGEVSRPEYVKVTFQDRKGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  + HE+DHL+G+LF   + R
Sbjct: 117 KLLVEAEGFLARAILHEIDHLHGVLFTSKVIR 148


>gi|300691609|ref|YP_003752604.1| peptide deformylase [Ralstonia solanacearum PSI07]
 gi|299078669|emb|CBJ51327.1| Peptide deformylase [Ralstonia solanacearum PSI07]
          Length = 170

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 9   FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
             D  L RV++P+++    ++  LI++M + M +  G GLAA QIGV  ++V+       
Sbjct: 1   MGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGFDRSE 60

Query: 68  HRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              +       V INP I   SD+     EGCLS+P  R  V R   +     D + Q  
Sbjct: 61  RYPDAPAVPKTVLINPTIEPLSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGQAI 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              A+G  A  +QHE DHL GIL+   +    R   T+
Sbjct: 121 DRIAEGFHARVVQHECDHLQGILYPMRVRDFTRFGFTE 158


>gi|254414456|ref|ZP_05028222.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
 gi|196178686|gb|EDX73684.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420]
          Length = 177

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 7/158 (4%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M K   +    +PILR++++PI+ + +  I  LI+ +     + +G+G+AA QI    RL
Sbjct: 1   MTKSLEIAQLGNPILRQLAQPIDNVQDESIQKLIEALKAKAVAANGVGIAAPQISQSCRL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++  + +    N     P   INP+I+  SD      EGCLSIP  R  V R   I V 
Sbjct: 61  FIVASRPNPRYPNAPTMEPTAMINPQIVAHSDQVVKGWEGCLSIPGIRGLVPRYQAIEVE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y +   + Q       +A  +QHE DHLNGI+F+D + 
Sbjct: 121 YTNQEGKPQRQQLTDFVARIVQHEYDHLNGIVFVDRVE 158


>gi|321315338|ref|YP_004207625.1| peptide deformylase [Bacillus subtilis BSn5]
 gi|320021612|gb|ADV96598.1| peptide deformylase [Bacillus subtilis BSn5]
          Length = 160

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R +    +NP+I+  S +     EGCLS P    DV R+ ++ VR  +   +
Sbjct: 61  VDIGDDRGRID---LVNPEILEKSGE-QTGIEGCLSFPGVYGDVTRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|257868125|ref|ZP_05647778.1| formylmethionine deformylase [Enterococcus casseliflavus EC30]
 gi|257874600|ref|ZP_05654253.1| formylmethionine deformylase [Enterococcus casseliflavus EC10]
 gi|325567766|ref|ZP_08144377.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
 gi|257802239|gb|EEV31111.1| formylmethionine deformylase [Enterococcus casseliflavus EC30]
 gi|257808764|gb|EEV37586.1| formylmethionine deformylase [Enterococcus casseliflavus EC10]
 gi|325158539|gb|EGC70686.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
          Length = 163

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 102/165 (61%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LRR ++P++ I  +++ L+D++ E M + DGIG+AA Q+G   ++ ++
Sbjct: 1   MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++++          INP+II  S + S+  EGCLSIP     VKR+  ITVRY D   + 
Sbjct: 61  EVEEDDR----FEMINPEIIASSGE-SLDVEGCLSIPHTFGTVKRADEITVRYFDREGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKL 165
             + A G LA  +QHE+DHLNG+LF+D L  R+  + + K M + 
Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKLVERIPEEDLEKYMEEH 160


>gi|86357835|ref|YP_469727.1| peptide deformylase [Rhizobium etli CFN 42]
 gi|86281937|gb|ABC91000.1| peptide deformylase protein [Rhizobium etli CFN 42]
          Length = 164

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V +P+   ++ +  L +++L  M +  G+G+ A  IGVL R+ V
Sbjct: 1   MPVRPILRYPHPGLKTVCQPVTAFDASLAALAEDLLATMRAAPGVGITAAHIGVLLRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +   +++NP+I   S +   + EG +S+P    +V R   I  RY D    
Sbjct: 61  LELDRADGVR---LYVNPQITWRSQETISHAEGSVSMPGATEEVTRPRAIRFRYQDAGGI 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+G LA C+QHE+D L+GI ++  LSRLKR+ + KK  K
Sbjct: 118 VHEKAAEGFLAICVQHEVDQLDGIFWLQRLSRLKRERLVKKWEK 161


>gi|326383421|ref|ZP_08205108.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395]
 gi|326197827|gb|EGD55014.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395]
          Length = 197

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 11/174 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  +P+L + + P+E     K +++I+ L+D+M + M + +G+GLAA QIG  
Sbjct: 1   MAILPICIIGEPVLHQPTTPVELDADSKPSAEIVTLLDDMYDTMDAANGVGLAANQIGEG 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
            R+ V D  D   R+   V INP     +I     D     EGCLS+P       R+ + 
Sbjct: 61  LRMFVYDCPDGGVRRRGEV-INPVLETSEIPETMPDPDDNDEGCLSVPGEGFPTGRADWA 119

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            V   D N     I  +G  A  LQHE  HL+G L++D L         K + +
Sbjct: 120 KVVGTDRNGDPVEIEGNGFFARMLQHETGHLDGFLYVDVLVGRNARAAKKAVKR 173


>gi|56475469|ref|YP_157058.1| peptide deformylase [Aromatoleum aromaticum EbN1]
 gi|56311512|emb|CAI06157.1| N-formylmethionyl-tRNA deformylase 2 [Aromatoleum aromaticum EbN1]
          Length = 175

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + L+   DP L + + P++   + ++  L+ ++ + M +  G+GLAA QIGV  ++V
Sbjct: 1   MTIRTLLRMGDPRLLQPAEPVDAFGTVELAALVVDLFDTMAAHGGVGLAAPQIGVGLQMV 60

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +   +      +       V +NP I    +      EGCLS+P  R  V R + I  + 
Sbjct: 61  IFGFERSERYPDAPPVPQTVLLNPVITPLGELVEEGWEGCLSVPGLRGMVPRHSRIRYQG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            D   Q     A+G  A  +QHE DHL G+L+   +    R   T+ +
Sbjct: 121 ADSQGQTIDRIAEGFHARVVQHECDHLAGVLYPMRVRDFSRFGYTEVL 168


>gi|189502648|ref|YP_001958365.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|238692315|sp|B3ETT4|DEF_AMOA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189498089|gb|ACE06636.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 188

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 8/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + + ILR+ + PIE + +D+  LI++M   M +  G+GLAA QIG   +L V+
Sbjct: 1   MIYPIVPYGESILRQTAAPIE-LGTDLETLIESMFITMNAAKGLGLAAPQIGKSIQLFVV 59

Query: 62  DLQDHAHR------KNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRY 114
           D+            K+  V+INP +  +  +    Y+EGCLSIP    DV R+  + +++
Sbjct: 60  DVSPFVGDGMVQPDKHRKVYINPVLEIYQPNTITHYEEGCLSIPGIYVDVPRNKRVRIKF 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            D N Q Q      + A  +QHE DHL G L ID+L   +R  +  K+  + Q R
Sbjct: 120 FDRNWQAQEEDLVDMPARVVQHEYDHLYGKLHIDYLRADRRLRLKSKLENIKQGR 174


>gi|256372453|ref|YP_003110277.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009037|gb|ACU54604.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 164

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 6/147 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+    DP+L   +R +E I++ +  LI++M+  M+   G+GLAA Q+GV  RL V
Sbjct: 1   MPILPIRTIGDPVLSHRAREVETIDARLDQLIEDMIVTMHEAPGVGLAAPQVGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D      P V INP+I+  +     Y+EGCLS+P Y   ++R   + +RY+  + +
Sbjct: 61  WDIGD-----GPDVAINPEIVERTG-TWRYEEGCLSVPGYFWPIERPRTVLLRYVTRDGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
              +    LL    QHE DHL+G+L I
Sbjct: 115 VAELEGSDLLGRVFQHETDHLDGVLLI 141


>gi|255325949|ref|ZP_05367039.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
 gi|255296964|gb|EET76291.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
          Length = 201

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR V  PI   + D+  LID+MLE MY   G+GLA  Q+G+  ++  
Sbjct: 1   MTILSIRTVGDPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          INP +    +D    + GCLS+P  ++   R  +  V  +D   +
Sbjct: 61  FGGIDDRE----GYIINPVLEVGEEDQEGGE-GCLSVPGQKSATPRKNWARVTGVDRRGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++  +GL A  LQHE DHL+G LFID L    R  + + +  
Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRQRVMRALRA 159


>gi|170761101|ref|YP_001787941.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408090|gb|ACA56501.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree]
          Length = 178

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I N+ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDEITGIIKNLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+   + + P++ INPK +         +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  IDLR---NGQEPIILINPKFLKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|311742536|ref|ZP_07716345.1| peptide deformylase [Aeromicrobium marinum DSM 15272]
 gi|311314164|gb|EFQ84072.1| peptide deformylase [Aeromicrobium marinum DSM 15272]
          Length = 203

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 3/168 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +P+  +  P++ R    +   + D+  L+ +M+  MY+ +G+GLAA Q+GV  ++ V D
Sbjct: 15  VRPITRWGTPVMHRELADVTTFDEDLRVLVRDMVATMYAANGVGLAANQVGVDLKVFVFD 74

Query: 63  LQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             D    +   V  NP +              EGCLS+P       R     V   D + 
Sbjct: 75  CPDEDSERVTGVVCNPVLTLPALGDRRLDDDDEGCLSLPGAFTTCARPDAAHVSGFDEHG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +       GLLA CLQHE DHL G +F D +    R  + K   ++ +
Sbjct: 135 EPVEFTGSGLLARCLQHETDHLFGTVFGDRVPERSRKKLYKTHREVAE 182


>gi|312129572|ref|YP_003996912.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
 gi|311906118|gb|ADQ16559.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
          Length = 193

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 15/166 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++ +   IL++    IEK   ++  LI +M E M + +G GLA+ QIG+  RL ++
Sbjct: 1   MKRPILAYGHSILKQKCNDIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60

Query: 62  DLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           D +               +        +FIN KII  S +     EGCLSIP+    VKR
Sbjct: 61  DSKTTFENLDEQDQGIYFEKNDSGIKEIFINAKIIERSAELWEDDEGCLSIPELSQKVKR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              IT+ Y + + + Q     G  A  +QHE DH  GIL++D+L  
Sbjct: 121 PWTITIAYYNKDFELQRKTFSGTTARMIQHEYDHTEGILYLDYLKP 166


>gi|314914712|gb|EFS78543.1| peptide deformylase [Propionibacterium acnes HL005PA4]
          Length = 200

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 3/168 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +  + + +L   +RP+ + + D+  LI +M   M + DG+GLAA Q+GV   L V   
Sbjct: 22  RRVTRWGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVYAC 81

Query: 64  QDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +  +   F NP +              EGCLS P     + R    T    D    
Sbjct: 82  PDANNIVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGN 141

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +   G  A CLQHE DH NGI+F D LS+  R  + ++   +  L
Sbjct: 142 DITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189


>gi|255262069|ref|ZP_05341411.1| peptide deformylase [Thalassiobium sp. R2A62]
 gi|255104404|gb|EET47078.1| peptide deformylase [Thalassiobium sp. R2A62]
          Length = 164

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +  V++PD  LR  +  + +I  DI  + D M+E M +  G+GLAAVQIGV  RL V+
Sbjct: 1   MTRSYVMWPDKRLRTAASDVAEITDDIRAIWDEMIEAMDAMPGVGLAAVQIGVPLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D   R   +   NP+I+  S +   +QE   ++P   A V R   +TV++MD N + 
Sbjct: 61  DASDA--RGQAIRMANPEILFASAEMRTHQEASPNLPGVSAIVGRPRAVTVQFMDANGEL 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                 GL AT +QH++DHL G ++ DH+SR KRDM+ KK +KL
Sbjct: 119 VQRDLVGLWATSVQHQIDHLAGRMYFDHVSRTKRDMLIKKSAKL 162


>gi|50843003|ref|YP_056230.1| polypeptide deformylase [Propionibacterium acnes KPA171202]
 gi|289426491|ref|ZP_06428234.1| peptide deformylase [Propionibacterium acnes SK187]
 gi|289428707|ref|ZP_06430390.1| peptide deformylase [Propionibacterium acnes J165]
 gi|295131074|ref|YP_003581737.1| peptide deformylase [Propionibacterium acnes SK137]
 gi|50840605|gb|AAT83272.1| polypeptide deformylase [Propionibacterium acnes KPA171202]
 gi|289153219|gb|EFD01937.1| peptide deformylase [Propionibacterium acnes SK187]
 gi|289158105|gb|EFD06325.1| peptide deformylase [Propionibacterium acnes J165]
 gi|291377293|gb|ADE01148.1| peptide deformylase [Propionibacterium acnes SK137]
 gi|313763558|gb|EFS34922.1| peptide deformylase [Propionibacterium acnes HL013PA1]
 gi|313773497|gb|EFS39463.1| peptide deformylase [Propionibacterium acnes HL074PA1]
 gi|313793950|gb|EFS41974.1| peptide deformylase [Propionibacterium acnes HL110PA1]
 gi|313801337|gb|EFS42588.1| peptide deformylase [Propionibacterium acnes HL110PA2]
 gi|313807983|gb|EFS46464.1| peptide deformylase [Propionibacterium acnes HL087PA2]
 gi|313811548|gb|EFS49262.1| peptide deformylase [Propionibacterium acnes HL083PA1]
 gi|313813394|gb|EFS51108.1| peptide deformylase [Propionibacterium acnes HL025PA1]
 gi|313816738|gb|EFS54452.1| peptide deformylase [Propionibacterium acnes HL059PA1]
 gi|313819551|gb|EFS57265.1| peptide deformylase [Propionibacterium acnes HL046PA2]
 gi|313822126|gb|EFS59840.1| peptide deformylase [Propionibacterium acnes HL036PA1]
 gi|313823640|gb|EFS61354.1| peptide deformylase [Propionibacterium acnes HL036PA2]
 gi|313825965|gb|EFS63679.1| peptide deformylase [Propionibacterium acnes HL063PA1]
 gi|313829432|gb|EFS67146.1| peptide deformylase [Propionibacterium acnes HL063PA2]
 gi|313831289|gb|EFS69003.1| peptide deformylase [Propionibacterium acnes HL007PA1]
 gi|313834899|gb|EFS72613.1| peptide deformylase [Propionibacterium acnes HL056PA1]
 gi|313839941|gb|EFS77655.1| peptide deformylase [Propionibacterium acnes HL086PA1]
 gi|314919327|gb|EFS83158.1| peptide deformylase [Propionibacterium acnes HL050PA1]
 gi|314920764|gb|EFS84595.1| peptide deformylase [Propionibacterium acnes HL050PA3]
 gi|314924710|gb|EFS88541.1| peptide deformylase [Propionibacterium acnes HL036PA3]
 gi|314930643|gb|EFS94474.1| peptide deformylase [Propionibacterium acnes HL067PA1]
 gi|314954401|gb|EFS98807.1| peptide deformylase [Propionibacterium acnes HL027PA1]
 gi|314957515|gb|EFT01618.1| peptide deformylase [Propionibacterium acnes HL002PA1]
 gi|314962119|gb|EFT06220.1| peptide deformylase [Propionibacterium acnes HL002PA2]
 gi|314963697|gb|EFT07797.1| peptide deformylase [Propionibacterium acnes HL082PA1]
 gi|314968475|gb|EFT12573.1| peptide deformylase [Propionibacterium acnes HL037PA1]
 gi|314974164|gb|EFT18260.1| peptide deformylase [Propionibacterium acnes HL053PA1]
 gi|314976545|gb|EFT20640.1| peptide deformylase [Propionibacterium acnes HL045PA1]
 gi|314978999|gb|EFT23093.1| peptide deformylase [Propionibacterium acnes HL072PA2]
 gi|314984364|gb|EFT28456.1| peptide deformylase [Propionibacterium acnes HL005PA1]
 gi|314986554|gb|EFT30646.1| peptide deformylase [Propionibacterium acnes HL005PA2]
 gi|314990913|gb|EFT35004.1| peptide deformylase [Propionibacterium acnes HL005PA3]
 gi|315079547|gb|EFT51540.1| peptide deformylase [Propionibacterium acnes HL053PA2]
 gi|315081224|gb|EFT53200.1| peptide deformylase [Propionibacterium acnes HL078PA1]
 gi|315083591|gb|EFT55567.1| peptide deformylase [Propionibacterium acnes HL027PA2]
 gi|315087107|gb|EFT59083.1| peptide deformylase [Propionibacterium acnes HL002PA3]
 gi|315089281|gb|EFT61257.1| peptide deformylase [Propionibacterium acnes HL072PA1]
 gi|315095304|gb|EFT67280.1| peptide deformylase [Propionibacterium acnes HL038PA1]
 gi|315099184|gb|EFT71160.1| peptide deformylase [Propionibacterium acnes HL059PA2]
 gi|315100332|gb|EFT72308.1| peptide deformylase [Propionibacterium acnes HL046PA1]
 gi|315106855|gb|EFT78831.1| peptide deformylase [Propionibacterium acnes HL030PA1]
 gi|315108984|gb|EFT80960.1| peptide deformylase [Propionibacterium acnes HL030PA2]
 gi|327328434|gb|EGE70196.1| peptide deformylase [Propionibacterium acnes HL096PA2]
 gi|327329700|gb|EGE71456.1| peptide deformylase [Propionibacterium acnes HL096PA3]
 gi|327334216|gb|EGE75930.1| peptide deformylase [Propionibacterium acnes HL097PA1]
 gi|327444220|gb|EGE90874.1| peptide deformylase [Propionibacterium acnes HL043PA2]
 gi|327444900|gb|EGE91554.1| peptide deformylase [Propionibacterium acnes HL043PA1]
 gi|327446386|gb|EGE93040.1| peptide deformylase [Propionibacterium acnes HL013PA2]
 gi|327452026|gb|EGE98680.1| peptide deformylase [Propionibacterium acnes HL092PA1]
 gi|327454936|gb|EGF01591.1| peptide deformylase [Propionibacterium acnes HL087PA3]
 gi|327457777|gb|EGF04432.1| peptide deformylase [Propionibacterium acnes HL083PA2]
 gi|328752375|gb|EGF65991.1| peptide deformylase [Propionibacterium acnes HL020PA1]
 gi|328755230|gb|EGF68846.1| peptide deformylase [Propionibacterium acnes HL087PA1]
 gi|328758290|gb|EGF71906.1| peptide deformylase [Propionibacterium acnes HL025PA2]
 gi|328760021|gb|EGF73603.1| peptide deformylase [Propionibacterium acnes HL099PA1]
 gi|332675954|gb|AEE72770.1| peptide deformylase 3 [Propionibacterium acnes 266]
          Length = 200

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 3/168 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +  + + +L   +RP+ + + D+  LI +M   M + DG+GLAA Q+GV   L V   
Sbjct: 22  RRVTRWGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVYAC 81

Query: 64  QDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +  +   F NP +              EGCLS P     + R    T    D    
Sbjct: 82  PDANNIVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGN 141

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +   G  A CLQHE DH NGI+F D LS+  R  + ++   +  L
Sbjct: 142 DITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189


>gi|218899020|ref|YP_002447431.1| peptide deformylase [Bacillus cereus G9842]
 gi|228902371|ref|ZP_04066527.1| Peptide deformylase [Bacillus thuringiensis IBL 4222]
 gi|228909692|ref|ZP_04073515.1| Peptide deformylase [Bacillus thuringiensis IBL 200]
 gi|228966817|ref|ZP_04127861.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218544444|gb|ACK96838.1| peptide deformylase [Bacillus cereus G9842]
 gi|228792916|gb|EEM40474.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228849981|gb|EEM94812.1| Peptide deformylase [Bacillus thuringiensis IBL 200]
 gi|228857269|gb|EEN01773.1| Peptide deformylase [Bacillus thuringiensis IBL 4222]
          Length = 156

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDVDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|241764867|ref|ZP_04762871.1| peptide deformylase [Acidovorax delafieldii 2AN]
 gi|241365616|gb|EER60346.1| peptide deformylase [Acidovorax delafieldii 2AN]
          Length = 197

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 7/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   DP L R+++P++K +  ++  LI +MLE M +  G GLAA QIGV  ++V
Sbjct: 19  MTIHSILKMGDPRLLRIAQPVQKFDTPELHQLIRDMLETMRAAQGAGLAAPQIGVDLQVV 78

Query: 60  VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +    +   R        P V +NP I    +D     EGCLS+P  R  V R   I   
Sbjct: 79  IFGSNEPNRRYPDRPLVPPTVLVNPVITPLGEDEEEDWEGCLSVPGLRGKVPRWLHIRYS 138

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             D +       A+G  A  +QHE DHL G L+   +    +   T+
Sbjct: 139 GFDAHGSPIDRVAEGFHARVVQHECDHLMGKLYPMRVRDFSQFGFTE 185


>gi|118602931|ref|YP_904146.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567870|gb|ABL02675.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 185

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 20/167 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +PD  LR  ++ +  I+  I  LI +M E +Y+ DGIGLAA Q+    ++VVI
Sbjct: 1   MILPILNYPDKRLRTKAKHVNVIDETIQTLIKDMFETIYAKDGIGLAATQVDQHLQVVVI 60

Query: 62  DLQD-------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           DL+                     + + +P+ FINP+I    D    + EGCLS+PD++A
Sbjct: 61  DLEPNSQDDYQLFLKNFQRSSHKQSQKHHPLCFINPRIKEK-DGQEKHIEGCLSVPDFQA 119

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +V+R+  I V  ++   +   + A GLLA C+QHELDHL G+LF+D+
Sbjct: 120 EVQRANHIKVEALNEKGEVFTLQATGLLAICIQHELDHLKGVLFVDY 166


>gi|126662042|ref|ZP_01733041.1| peptide deformylase [Flavobacteria bacterium BAL38]
 gi|126625421|gb|EAZ96110.1| peptide deformylase [Flavobacteria bacterium BAL38]
          Length = 195

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + +P+LR+V   I     ++   I NM E MY   G+GLAA Q+G+  RL ++
Sbjct: 1   MILPIYGYGEPVLRKVGEDISPEYPNLKETIVNMYETMYHAHGVGLAAPQVGLPIRLFIV 60

Query: 62  DLQDHAH------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D +  +             +     FIN KII    D   + EGCLSIPD R DV R   
Sbjct: 61  DTEPFSDSDDVSKEEAALMKDFKKTFINAKIIKEEGDVWGFNEGCLSIPDVREDVFRHDT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           IT+ Y D +   +    DGL+A  +QHE DH+ GILF DH+S
Sbjct: 121 ITIEYFDEDFNKKTEVYDGLIARVIQHEYDHIEGILFTDHIS 162


>gi|253681826|ref|ZP_04862623.1| peptide deformylase [Clostridium botulinum D str. 1873]
 gi|253561538|gb|EES90990.1| peptide deformylase [Clostridium botulinum D str. 1873]
          Length = 159

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V   + +LRR S+ I++I+ +++ LI ++ + +YS DG+GLAA QIG+L R  +
Sbjct: 1   MAIKNIVTVENKLLRRKSKRIDRIDDEVLELIQDLKDTLYSGDGVGLAAPQIGILKRAFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+D      P++ +NPKI+     +    EGCLS P Y   V R   + V  M+   +
Sbjct: 61  IDLRDGNG---PLILLNPKILKKIGKYEDG-EGCLSYPGYEGIVVRPRKVVVSGMNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +    A GL+A  + HE DHL+GIL++D   ++ +
Sbjct: 117 NVQYEATGLMARAICHETDHLDGILYMDLAKKMYK 151


>gi|227502026|ref|ZP_03932075.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
 gi|227077310|gb|EEI15273.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
          Length = 207

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P+VI  +P+L + + P+E+    + ++  LI +M E M    G+GLAA Q+G+  R
Sbjct: 1   MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60

Query: 58  LVVIDLQDHAHRK-----------------NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           L V    D                      NP++  +    T   D     EGCLS+P  
Sbjct: 61  LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                R+ +  V   D N     +   G  A CLQHE  HL+G ++ D L    +    K
Sbjct: 121 GFPTGRADWARVTGKDENGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKRQAKK 180

Query: 161 KMSK 164
            + +
Sbjct: 181 AIKR 184


>gi|224538349|ref|ZP_03678888.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519978|gb|EEF89083.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 171

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + KP+ I+ +P+LR+    IEK    I  +I+ M +   + DG GLAA QI +  +L V+
Sbjct: 1   MIKPITIYGNPVLRKECVSIEKTYPGIQEVIETMWQTQRNADGCGLAAPQINLPIKLFVV 60

Query: 62  DLQD---------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           + +D                        FIN +I  +SD+     EGCLSIPD   +V R
Sbjct: 61  NSRDSYACMSIRERERFFSKDDCGIEETFINAEITGYSDEVWTTGEGCLSIPDLYEEVTR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              IT++Y D     Q+    G  A  +QHE +H  G L+IDHLS  ++ +
Sbjct: 121 PWSITIKYQDKEFNEQVKVYHGYTARIIQHEFEHTEGKLYIDHLSPFRKQL 171


>gi|302037899|ref|YP_003798221.1| peptide deformylase [Candidatus Nitrospira defluvii]
 gi|300605963|emb|CBK42296.1| Peptide deformylase [Candidatus Nitrospira defluvii]
          Length = 163

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L+  +  +   +  +  ++ +ML+ + ++ G+ LAA QIG   +++V
Sbjct: 1   MAIRPILQYPHQALKSTNAAVAPSDPAVQAVVQDMLDTLAASPGVALAAPQIGHAVQVIV 60

Query: 61  IDLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D+      +    +V +NP I++     SV +EGCLS+PDY  +V R     V  +   
Sbjct: 61  VDVSRKKGERGHGLVVLLNPVILSLEGKKSV-REGCLSVPDYTGNVLRYEEALVEGLTPE 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
            +   + A G  A   QHE+DHLNG+LF+D +  L  D+  +K
Sbjct: 120 GRVVTVSASGFGALAFQHEVDHLNGMLFLDRIESLSTDLFRRK 162


>gi|268679608|ref|YP_003304039.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617639|gb|ACZ12004.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
          Length = 182

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 91/172 (52%), Gaps = 6/172 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            +     PI+R V++P+  I + +I +LID M+     + G+G+AA Q+G    ++++  
Sbjct: 6   EIFQLGSPIIRFVAKPVSDILDPEIQSLIDAMIFTCKESKGVGIAAPQVGHSLSIIIMAS 65

Query: 64  QDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
             +          P   INP+II++S+  +   EGCLS+P  RA V R   I VRY+D  
Sbjct: 66  YPNKRYPYAPLMEPTALINPEIISYSEASNKEWEGCLSLPGIRALVPRHNTIEVRYVDRE 125

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + Q  +    LA   QHE DHL G +FID +   +  ++ K+  +L+  ++
Sbjct: 126 GKAQYAHFKDFLARLFQHEYDHLIGKVFIDRVESTQEIIMEKEYQRLMAEKE 177


>gi|187917944|ref|YP_001883507.1| peptide deformylase [Borrelia hermsii DAH]
 gi|119860792|gb|AAX16587.1| peptide deformylase [Borrelia hermsii DAH]
          Length = 174

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +PD +LR  ++ +  I+ ++ N+   M+ +M    G+GLAA Q+G+   + V+   
Sbjct: 11  EIVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVGLDLSIFVV--- 67

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP I   S + SVY+EGCLSIP    D+ R   ITV   D N +   I
Sbjct: 68  RENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKFFKI 127

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +  LLA  +QHE+DHL G+LFID+     R+ + K   K  +L
Sbjct: 128 ESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMKGRRL 171


>gi|226950032|ref|YP_002805123.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|226843262|gb|ACO85928.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
          Length = 178

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+  I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKTLKRVSKKVECIDDGITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+   + + P++ INPK           +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  IDLR---NGQEPIILINPKFSKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|145589658|ref|YP_001156255.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048064|gb|ABP34691.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 181

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + ++   DP L  +++P++     +  I  LID++LE MY+ +G GLAA QIGV  +
Sbjct: 1   MAIQSILRMGDPRLLEIAKPVDPKLISSQQIQTLIDDLLETMYAVNGAGLAAPQIGVNQQ 60

Query: 58  LVVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +VV           A +    + INP I   SD      EGCLS+P  RA V R   I  
Sbjct: 61  VVVFGFDQNPRYPDAEQVPETILINPIITPLSDISMEDWEGCLSVPGLRAKVPRYTKIRY 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +  D   Q      +   A  ++HE DHL G LF   +   
Sbjct: 121 QGFDRYGQSIDRTVEDFHARVVRHECDHLIGKLFPMRVKDF 161


>gi|229098336|ref|ZP_04229283.1| Peptide deformylase [Bacillus cereus Rock3-29]
 gi|229104429|ref|ZP_04235098.1| Peptide deformylase [Bacillus cereus Rock3-28]
 gi|229117353|ref|ZP_04246731.1| Peptide deformylase [Bacillus cereus Rock1-3]
 gi|228666253|gb|EEL21717.1| Peptide deformylase [Bacillus cereus Rock1-3]
 gi|228679127|gb|EEL33335.1| Peptide deformylase [Bacillus cereus Rock3-28]
 gi|228685234|gb|EEL39165.1| Peptide deformylase [Bacillus cereus Rock3-29]
          Length = 156

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLMADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDVDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|291484124|dbj|BAI85199.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
          Length = 160

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R +    +NP+I+  S +     EGCLS P    DVKR+ ++ VR  +   +
Sbjct: 61  VDIGDDRGRID---LVNPEILERSGE-QTGIEGCLSFPGVYGDVKRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|327398717|ref|YP_004339586.1| peptide deformylase [Hippea maritima DSM 10411]
 gi|327181346|gb|AEA33527.1| Peptide deformylase [Hippea maritima DSM 10411]
          Length = 168

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 6/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLV 59
           M  + +VI+PD  L+ +   I+ IN + + +  ++LE M Y    +G+AA QIG L R++
Sbjct: 1   MPVRDIVIYPDQRLKAICDEIKNINDEALQVAKDLLETMRYYNHTVGIAAPQIGELVRII 60

Query: 60  VIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            +D              ++ INP+I+ +S      +EGCLS+PDY  +V R+  ITV+Y 
Sbjct: 61  AVDASKNKKGQKINHGELIMINPEILDWS-SIIKTREGCLSVPDYTGNVNRARKITVKYW 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           D + +      +G  A  +QHE+DHL+GILFID +   + D+  +K
Sbjct: 120 DLDGKEHQFDTEGFEAVVIQHEIDHLDGILFIDRIISKRTDLFRRK 165


>gi|222148494|ref|YP_002549451.1| peptide deformylase [Agrobacterium vitis S4]
 gi|221735480|gb|ACM36443.1| peptide deformylase [Agrobacterium vitis S4]
          Length = 166

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 4/166 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++ +P P+L +  + +   +  +++  D +   M +  G+G+ A  +G L RLV+
Sbjct: 1   MALK-ILRYPHPLLAKPCQTVTAFDDRLISFADALYNAMRAAPGVGITAAHVGELMRLVI 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R++   ++NP+I++FS +   + EG + +P     V R   IT+RY   +  
Sbjct: 60  LDLPELGGRRD---YVNPEILSFSQNTLDHDEGSVCMPGMTETVTRPRQITLRYQSLDGT 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            +        A C+QHE+D L+G+ +I  LSRLKRD + KK  K  
Sbjct: 117 VREEELQDFAAICMQHEIDQLDGLFWIQRLSRLKRDRLLKKWQKAA 162


>gi|269955166|ref|YP_003324955.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
 gi|269303847|gb|ACZ29397.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
          Length = 227

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 6   LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           +    +P+L   +RP+ ++   ++  LID+M   M   +G+GLAA Q+GV  R+ V DL 
Sbjct: 36  ITEIGEPVLHTPARPVTELGTPELARLIDDMFTTMDVAEGVGLAAPQVGVDLRVFVYDLT 95

Query: 65  DHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           D A  ++    +NP++      D  V  EGCLS+P   A ++R    T+R +D       
Sbjct: 96  DDAGDRHVGAVVNPELELDLDADPEVEDEGCLSVPGAYAPLERPGGATIRGVDQLGGPVQ 155

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLK-----RDMITKKMSKLVQLRD 170
           + A G LA C  HE  HL+G L+ DHL+  +     R    K+   L Q R+
Sbjct: 156 LEATGYLARCFIHEAQHLDGTLYWDHLTPEQQADALRQRDEKRAEVLAQRRE 207


>gi|218661137|ref|ZP_03517067.1| peptide deformylase [Rhizobium etli IE4771]
          Length = 184

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P   L+ V  P+   +  +  L D++L  M +  G+G+ A  IGV  R+ V
Sbjct: 21  MPVRPILRYPHQGLKTVCAPVTAFDDSLAALADDLLATMRAAPGVGITAAHIGVSLRVTV 80

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +   +++NP+I   S +  ++ EG +S+P    +V R   I  RY D + +
Sbjct: 81  LELDKTDGVR---LYVNPEITWQSQETMIHTEGSVSMPGATDEVTRPRAIRFRYQDADGK 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 138 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 181


>gi|118340581|gb|ABK80631.1| putative formylmethionine deformylase [uncultured marine
           Nitrospinaceae bacterium]
          Length = 169

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 103/166 (62%), Gaps = 5/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M    ++++PD  L++VS+P+E+ + D+   I+N+ E   S  G +G+AA Q+G L R+V
Sbjct: 1   MALLNILVYPDERLKQVSQPVEEFSEDLKKFIENLEETFRSFPGCVGIAAPQVGRLERIV 60

Query: 60  VIDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++D+   +   N   +V INP++I F +  S+ +EGCLS+PD+   V+RS  I ++ ++ 
Sbjct: 61  LVDISHKSKHVNHGFLVLINPEVI-FYEGNSLGREGCLSVPDFIGKVERSKSINLKALNQ 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             +   +   G  A  +QHE+DHLNG LF+D L   +R+ ++K++ 
Sbjct: 120 KGEKLELQMSGYEARAVQHEIDHLNGKLFLDRLVS-RRNSLSKRIE 164


>gi|67924995|ref|ZP_00518380.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
 gi|67853169|gb|EAM48543.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
          Length = 173

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 6/154 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            +    +PILR+ ++ ++ + +  +  L+D +L      +G+G+AA Q+   YRL V+  
Sbjct: 7   EIAQVGNPILRQQAQLVQDLTDQKLQQLMDTLLTTARDANGVGIAAPQVSQSYRLFVVCS 66

Query: 64  QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
             +    +     P + INP+II+ +D+     EGCLS+P  R  V R   ITV Y+D  
Sbjct: 67  HPNPRYPDAPMMDPTIMINPRIISHNDEIVKGWEGCLSVPGVRGLVPRYKVITVEYLDRY 126

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + Q       +A   QHELDHLNGILFID + +
Sbjct: 127 GKLQQQKLKDFVARIFQHELDHLNGILFIDRVDK 160


>gi|42543585|pdb|1RQC|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543586|pdb|1RQC|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543587|pdb|1RQC|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543588|pdb|1RQC|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543589|pdb|1RQC|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543590|pdb|1RQC|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543591|pdb|1RQC|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543592|pdb|1RQC|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543593|pdb|1RQC|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|42543594|pdb|1RQC|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
          Length = 185

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 1/163 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V +PDPILRR S  +   + ++  ++    ++ Y + GIGL+A Q+ +  R++V + L 
Sbjct: 5   IVKYPDPILRRRSEEVTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNALY 64

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +    +N  +FINP I+  S       EGCLS P     V+R + +++ Y D N    + 
Sbjct: 65  EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 124

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ +   QHE DHLNG LFID  +++ +  +  K+++L++
Sbjct: 125 ILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 167


>gi|225018470|ref|ZP_03707662.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum
           DSM 5476]
 gi|224948779|gb|EEG29988.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum
           DSM 5476]
          Length = 150

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + L    DPILR+  R +E+++  I  L+D++ + MY+T +G GLA  Q+G+L RLV
Sbjct: 1   MAIRNLRFTDDPILRKRCREVEQVDDKIRTLLDDLADTMYNTENGGGLATCQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+         +  +NPKII  S       EGCLS P+    V R   +TV  +D N 
Sbjct: 61  VIDVG-----TGLLKLVNPKIIETSG-LQERLEGCLSFPNQWGKVLRPQKVTVEALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  II  +  LA CL HE+DHL+G++F+D +
Sbjct: 115 EEIIITGEDQLAQCLCHEIDHLDGVVFVDKV 145


>gi|124485018|ref|YP_001029634.1| peptide deformylase [Methanocorpusculum labreanum Z]
 gi|124362559|gb|ABN06367.1| peptide deformylase [Methanocorpusculum labreanum Z]
          Length = 162

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 6/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + I+   +L +V+ P++ I  +++ ++D M+ ++    G+GLAA Q+G+  R  V++  
Sbjct: 2   EIQIYGKTVLAQVAEPVDTITPELLAILDEMVPMLKEHRGVGLAAPQVGIGKRFFVMNPG 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D   R      INP+I+   + FS  +EGCLS+P     V+R   ITVRY +   +    
Sbjct: 62  DKVRR-----VINPEIMKTGNAFSEMEEGCLSVPGIHKKVRRPRRITVRYTNEAGELIEE 116

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 A    HE DHL+GILF+D +S + + MI K++  L +L++
Sbjct: 117 ELKDYPARVFLHEYDHLDGILFVDRISPIAKKMIAKQLEDL-RLKE 161


>gi|147669331|ref|YP_001214149.1| peptide deformylase [Dehalococcoides sp. BAV1]
 gi|189083069|sp|A5FRA7|DEF_DEHSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146270279|gb|ABQ17271.1| peptide deformylase [Dehalococcoides sp. BAV1]
          Length = 167

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+P+LR+ ++ +  I+  I  LID+M+E M S DG GLAA Q+GV  RLVV
Sbjct: 1   MAIRRICELPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D        V INP+II       V  EGCLSIP Y  ++ R+  +T + +D + +
Sbjct: 61  FREPDTKEA---TVLINPEIIKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I   G++A  L+HE +HL+GIL+IDHL   
Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESE 149


>gi|51598326|ref|YP_072514.1| peptide deformylase [Borrelia garinii PBi]
 gi|51572897|gb|AAU06922.1| polypeptide deformylase [Borrelia garinii PBi]
          Length = 186

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 91/160 (56%), Gaps = 7/160 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 23  EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVREN 82

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P+VFINP I   S + + Y+EGCLSIP    ++ R   I V++ D N +   I
Sbjct: 83  RMAR---PLVFINPSITETSYELNSYKEGCLSIPGVYYNLMRPNGIVVKFYDENGKSFTI 139

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                LA  +QHE+DHLNGILFID+      + I  K+ K
Sbjct: 140 ENSDFLARIIQHEMDHLNGILFIDYYE----ERIKNKLLK 175


>gi|73748571|ref|YP_307810.1| peptide deformylase [Dehalococcoides sp. CBDB1]
 gi|289432597|ref|YP_003462470.1| peptide deformylase [Dehalococcoides sp. GT]
 gi|123773670|sp|Q3ZXA9|DEF_DEHSC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|73660287|emb|CAI82894.1| polypeptide deformylase [Dehalococcoides sp. CBDB1]
 gi|288946317|gb|ADC74014.1| peptide deformylase [Dehalococcoides sp. GT]
          Length = 167

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+P+LR+ ++ +  I+  I  LID+M+E M S DG GLAA Q+GV  RLVV
Sbjct: 1   MAIRRICELPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D        V INP+I+       V  EGCLSIP Y  ++ R+  +T + +D + +
Sbjct: 61  FREPDTKEA---TVLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I   G++A  L+HE +HL+GIL+IDHL   
Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESE 149


>gi|148546572|ref|YP_001266674.1| peptide deformylase [Pseudomonas putida F1]
 gi|148510630|gb|ABQ77490.1| peptide deformylase [Pseudomonas putida F1]
          Length = 178

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+ +    ++++  LID+M E M    G+GLAA QIG+  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPEHMFGSAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   S +     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPTSSEIEDGWEGCLSVPGLRGVVPRFKHIGYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D        +ADG  A  +QHE DHL G L+   +    R   T+ +
Sbjct: 121 GIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRIQDFSRFGYTEVL 169


>gi|30021955|ref|NP_833586.1| peptide deformylase [Bacillus cereus ATCC 14579]
 gi|206971120|ref|ZP_03232071.1| peptide deformylase [Bacillus cereus AH1134]
 gi|218232337|ref|YP_002368668.1| peptide deformylase [Bacillus cereus B4264]
 gi|228940955|ref|ZP_04103514.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228954144|ref|ZP_04116172.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960083|ref|ZP_04121747.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228973884|ref|ZP_04134460.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980474|ref|ZP_04140784.1| Peptide deformylase [Bacillus thuringiensis Bt407]
 gi|229047554|ref|ZP_04193144.1| Peptide deformylase [Bacillus cereus AH676]
 gi|229071365|ref|ZP_04204588.1| Peptide deformylase [Bacillus cereus F65185]
 gi|229081122|ref|ZP_04213632.1| Peptide deformylase [Bacillus cereus Rock4-2]
 gi|229111338|ref|ZP_04240891.1| Peptide deformylase [Bacillus cereus Rock1-15]
 gi|229129143|ref|ZP_04258116.1| Peptide deformylase [Bacillus cereus BDRD-Cer4]
 gi|229146438|ref|ZP_04274809.1| Peptide deformylase [Bacillus cereus BDRD-ST24]
 gi|229152066|ref|ZP_04280261.1| Peptide deformylase [Bacillus cereus m1550]
 gi|229180143|ref|ZP_04307487.1| Peptide deformylase [Bacillus cereus 172560W]
 gi|229192036|ref|ZP_04319006.1| Peptide deformylase [Bacillus cereus ATCC 10876]
 gi|296504362|ref|YP_003666062.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|39931054|sp|Q819U0|DEF1_BACCR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|78100858|pdb|1WS0|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus
           Cereus
 gi|78100859|pdb|1WS1|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus
           Cereus
 gi|29897511|gb|AAP10787.1| Polypeptide deformylase [Bacillus cereus ATCC 14579]
 gi|206733892|gb|EDZ51063.1| peptide deformylase [Bacillus cereus AH1134]
 gi|218160294|gb|ACK60286.1| peptide deformylase [Bacillus cereus B4264]
 gi|228591587|gb|EEK49436.1| Peptide deformylase [Bacillus cereus ATCC 10876]
 gi|228603352|gb|EEK60829.1| Peptide deformylase [Bacillus cereus 172560W]
 gi|228631415|gb|EEK88049.1| Peptide deformylase [Bacillus cereus m1550]
 gi|228637071|gb|EEK93530.1| Peptide deformylase [Bacillus cereus BDRD-ST24]
 gi|228654380|gb|EEL10245.1| Peptide deformylase [Bacillus cereus BDRD-Cer4]
 gi|228672114|gb|EEL27405.1| Peptide deformylase [Bacillus cereus Rock1-15]
 gi|228702166|gb|EEL54642.1| Peptide deformylase [Bacillus cereus Rock4-2]
 gi|228711819|gb|EEL63771.1| Peptide deformylase [Bacillus cereus F65185]
 gi|228723801|gb|EEL75156.1| Peptide deformylase [Bacillus cereus AH676]
 gi|228779294|gb|EEM27551.1| Peptide deformylase [Bacillus thuringiensis Bt407]
 gi|228785909|gb|EEM33912.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228799599|gb|EEM46552.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228805464|gb|EEM52055.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228818791|gb|EEM64857.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|296325414|gb|ADH08342.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|326941636|gb|AEA17532.1| peptide deformylase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 156

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIIKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDVDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|325277883|ref|ZP_08143429.1| peptide deformylase [Pseudomonas sp. TJI-51]
 gi|324096986|gb|EGB95286.1| peptide deformylase [Pseudomonas sp. TJI-51]
          Length = 178

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L RV+ P+      + ++  LID+M E M    G+GLAA Q+G+  +L
Sbjct: 1   MIRDILKMGDERLLRVAAPVPAQLLGSGELQQLIDDMFETMRHVGGVGLAAPQVGIELQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   S +     EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPTSTELEDGWEGCLSVPGLRGVVPRFKHICYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +D        +A+G  A  +QHE DHL G L+   +    +
Sbjct: 121 GIDPQGNAIRRFAEGFHARVVQHECDHLIGRLYPSRIQDFTK 162


>gi|318061932|ref|ZP_07980653.1| polypeptide deformylase [Streptomyces sp. SA3_actG]
 gi|333028589|ref|ZP_08456653.1| putative polypeptide deformylase [Streptomyces sp. Tu6071]
 gi|332748441|gb|EGJ78882.1| putative polypeptide deformylase [Streptomyces sp. Tu6071]
          Length = 161

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 70/156 (44%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L   +R        +  L++++   MY+  G+GLAA QIG   R+ V D  D   R++  
Sbjct: 2   LTTPARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYDCPDDEDRRHLG 61

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
             +NP+++          EGCLS+P   A   R     V     +   + +   G  A C
Sbjct: 62  HLVNPRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARRRVEGTGFFARC 121

Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           LQHE DHL G L++D L   +   + ++  +    R
Sbjct: 122 LQHEYDHLEGGLYVDRLDARRHRKVLREAGRTGWGR 157


>gi|313892009|ref|ZP_07825610.1| peptide deformylase [Dialister microaerophilus UPII 345-E]
 gi|313119652|gb|EFR42843.1| peptide deformylase [Dialister microaerophilus UPII 345-E]
          Length = 153

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 9/156 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
            +V     +LR V++P+ +        + +LI +M + MY+ +G+GLAA QIG+  R+ V
Sbjct: 3   EVVKVGKAVLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFV 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D        V+INP+     D   +  EGCLS+ D   +V+R A + V+Y D   +
Sbjct: 63  ADCNDGFD-----VYINPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            +   A GL A C+QHE+DHLNG LFID    L + 
Sbjct: 118 RKQKKATGLFARCVQHEIDHLNGTLFIDKAITLNKR 153


>gi|311748398|ref|ZP_07722183.1| peptide deformylase [Algoriphagus sp. PR1]
 gi|126576910|gb|EAZ81158.1| peptide deformylase [Algoriphagus sp. PR1]
          Length = 184

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 6/153 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + +PIL++ +  I +  + +  +I NM   M + +G+GLAA QI    RL VI
Sbjct: 1   MIYPIVAYGNPILKKEADEINE-GTALDEMIQNMFATMDNANGVGLAAPQINEGVRLFVI 59

Query: 62  DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D      ++   +     FINP I+    D   ++EGCLSIPD RA++ R   +T+ Y D
Sbjct: 60  DSNLMLDEEDEEKGIRKAFINPIILDEYGDDYSFEEGCLSIPDVRAEITRPEKLTIEYFD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            N         G+ A  +QHE DHL GILF+D+
Sbjct: 120 ENWNLHEEEFSGMTARVIQHEYDHLEGILFVDY 152


>gi|251780966|ref|ZP_04823886.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085281|gb|EES51171.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 149

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/149 (39%), Positives = 89/149 (59%), Gaps = 7/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +  DPILR+ S+ +E I+  I +++++M E MY+T +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLCDDPILRKKSKEVEVIDDKIRDILNDMAETMYNTENGAGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  INPKII   +      EGCLS P+    +KR   + V+ ++ N 
Sbjct: 61  VIDM-----WQGLIKLINPKIIKK-EGIQEVIEGCLSSPNVFGKLKRPYKVIVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
           +   +   G LA C  HE+DHL+GILF D
Sbjct: 115 EEIELIGTGDLAKCFCHEIDHLDGILFTD 143


>gi|163790824|ref|ZP_02185249.1| peptide deformylase [Carnobacterium sp. AT7]
 gi|159873892|gb|EDP67971.1| peptide deformylase [Carnobacterium sp. AT7]
          Length = 164

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 4/150 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP+L   ++ + +I  +I+ L+++M E M + DGIG+AA Q+    RL +
Sbjct: 1   MSVLPILKYPDPMLITPTKEVTEITDEIVQLLEDMYETMVANDGIGIAAPQVNSNLRLAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ + +        INP+I+  + +  +  EGCLS P+    +KR+  I +RY D N  
Sbjct: 61  VEIDEESGLYE---MINPRIVHATGET-IDVEGCLSFPEVFGTIKRADTIVLRYYDRNGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              + AD  L+   QHEL+HL+G LF D +
Sbjct: 117 EFEVEADDYLSRAFQHELEHLDGKLFTDKI 146


>gi|227489313|ref|ZP_03919629.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227540902|ref|ZP_03970951.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090686|gb|EEI25998.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183162|gb|EEI64134.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 180

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 2/162 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI  DP+L   ++P+E   S    LID+M E MY+ +G+GLAA Q+G+     V 
Sbjct: 1   MIMPIVICGDPVLHTPTQPVETPLSP--KLIDDMFETMYAANGVGLAANQVGLSQSFFVF 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D +         V    ++     D     EGCLS+P       R+++  V   D N   
Sbjct: 59  DCEGVKGVVVNPVLETSEVPETMPDEEEDLEGCLSLPGEFFPTGRASWAKVTGTDENGNP 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                +  LA C QHE  HL G ++ D      R    + + 
Sbjct: 119 VEFEGEDFLARCFQHECGHLKGQVYTDVTIGRYRREAKRAIR 160


>gi|310815112|ref|YP_003963076.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
 gi|308753847|gb|ADO41776.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
          Length = 163

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 2/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++P P+LR+ +  +E I  +I  L D M+E M +  G+GLAAVQ+GV   L V+
Sbjct: 1   MHRPFVMWPAPVLRKPAAQVEAITPEITALWDEMVEAMDAMPGVGLAAVQLGVPLALAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  D   R   +   NP+I+  S     ++E   ++P   A + R   +TVR+++   + 
Sbjct: 61  DASDA--RGQAIRMANPEILHASVQLREHEEASPNLPGISAVISRPRAVTVRFLNAWGEV 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +     GL AT +QH++DHL G ++ D LS++KRDM  +K  K 
Sbjct: 119 EERDLVGLWATSMQHQIDHLAGKMYFDRLSKIKRDMFLRKARKF 162


>gi|294055692|ref|YP_003549350.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221]
 gi|293615025|gb|ADE55180.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221]
          Length = 193

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 17/177 (9%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
            + +PILR V  P+ + N ++  L ++M+E MY+ +GIGLAA QI    ++ V+D++   
Sbjct: 7   KYGEPILREVGAPVTEFNPELKQLAEDMIETMYAEEGIGLAAQQIDKALQICVVDVRPPE 66

Query: 68  HRK-----------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
             +                  PM  INPK+    D   VY+EGCLS PD R  V R   +
Sbjct: 67  GAEVPYNYSFDGRQPPLDLIMPMAIINPKVTIIDDTEDVYEEGCLSFPDVRGRVHRPIGV 126

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + D      II ADGLL  C+ HE+DHLNG LFID + +        ++ KL +
Sbjct: 127 RCEFQDTEGNPHIIEADGLLGRCILHEVDHLNGELFIDLMEKRDLRKNETRIKKLKR 183


>gi|288940537|ref|YP_003442777.1| peptide deformylase [Allochromatium vinosum DSM 180]
 gi|288895909|gb|ADC61745.1| peptide deformylase [Allochromatium vinosum DSM 180]
          Length = 166

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 94/167 (56%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M    ++  PD  L++VS P++  +  + + I ++ E   +  G +G+AA Q+    R+V
Sbjct: 1   MAILDILKLPDQRLKQVSEPVDSFDQSLRDFIADLEETRLAGPGAVGIAAPQVAHFRRIV 60

Query: 60  VIDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++DL       N   +V INP+I T  + F++ +EGCLS+PDY  +V R+  I ++  D 
Sbjct: 61  ILDLSSRPKTPNHGHLVLINPEI-THWEGFAMGREGCLSVPDYTGNVIRATQIRLKAQDA 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +        +G  A  +QHELDHL+G+LF+D +   + D+  +K+ K
Sbjct: 120 DGVEHQYEMEGFEARAVQHELDHLDGLLFVDRVVSRRTDLYRRKVYK 166


>gi|291543910|emb|CBL17019.1| peptide deformylase [Ruminococcus sp. 18P13]
          Length = 153

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 6/147 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V   DPIL +  R +E+ +  +  LID+M E +    G+GLAA Q+G+L R+ V
Sbjct: 1   MAIRNIVTSEDPILSKPCRTVEEFDDKLGQLIDDMFETLEKAKGLGLAAPQVGILKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  +NP I+  S       EGCLS P+    V R     +R  D + +
Sbjct: 61  MDVGD-----GRVEAVNPVILKESG-KQRDVEGCLSCPNQWGYVTRPNKCRLRAYDRHGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
              +    L   C  HE DHL+G+LF 
Sbjct: 115 EFTMDLKELGCRCACHETDHLDGLLFT 141


>gi|227495080|ref|ZP_03925396.1| peptide deformylase [Actinomyces coleocanis DSM 15436]
 gi|226831532|gb|EEH63915.1| peptide deformylase [Actinomyces coleocanis DSM 15436]
          Length = 163

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 7/166 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DPILR     I  I+  +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MTYREIRVIGDPILRTPCEWITDIDDKVKGLVEDLLENVDMDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            ++            +NPK++  S  +++    EGCLS+P      KR+ +  V  ++ +
Sbjct: 61  WNIDGDIGY-----VLNPKLVEASMEEEYQDGDEGCLSVPGLWFPTKRAWYARVEGINLD 115

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +  I+  + L+A CLQHE DHL G+L++D L R  R    K++ +
Sbjct: 116 GKKIIVEGEELMARCLQHECDHLEGMLYLDRLDRAMRRKAMKEVRE 161


>gi|70731936|ref|YP_261678.1| peptide deformylase [Pseudomonas fluorescens Pf-5]
 gi|68346235|gb|AAY93841.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5]
          Length = 179

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+  E  +  ++  LID+M + M S  G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAPPVPPEMFDSPELWELIDDMFQTMESVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + INP I   S       EGCLS+P  R  V+R   I   
Sbjct: 61  VIFGFEHSERYPEAEAVPQTILINPLITPLSPVLEEGWEGCLSVPGLRGAVQRYQHIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   +  +  A G  A  +QHE DHL G L+   +S   +   T+ +
Sbjct: 121 GFDPRGEPIVRVASGFHARVVQHECDHLIGRLYPSRISDFSKFGFTEVL 169


>gi|167035061|ref|YP_001670292.1| peptide deformylase [Pseudomonas putida GB-1]
 gi|166861549|gb|ABY99956.1| peptide deformylase [Pseudomonas putida GB-1]
          Length = 178

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+ +     +++  LID+M E M    G+GLAA QIG+  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPEHMLGTAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   S +     EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D        +ADG  A  +QHE DHL G L+   +    +   T+ +
Sbjct: 121 GIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRIQDFAKFGYTEVL 169


>gi|257899948|ref|ZP_05679601.1| formylmethionine deformylase [Enterococcus faecium Com15]
 gi|257837860|gb|EEV62934.1| formylmethionine deformylase [Enterococcus faecium Com15]
          Length = 163

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+R ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ VI
Sbjct: 1   MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGKNKRIAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +          INP+II    + S+  EGCLSIP     VKR+  +TVRY D + + 
Sbjct: 61  EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|69245426|ref|ZP_00603421.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257879837|ref|ZP_05659490.1| formylmethionine deformylase [Enterococcus faecium 1,230,933]
 gi|257882563|ref|ZP_05662216.1| formylmethionine deformylase [Enterococcus faecium 1,231,502]
 gi|257886039|ref|ZP_05665692.1| formylmethionine deformylase [Enterococcus faecium 1,231,501]
 gi|257891678|ref|ZP_05671331.1| formylmethionine deformylase [Enterococcus faecium 1,231,410]
 gi|257894153|ref|ZP_05673806.1| formylmethionine deformylase [Enterococcus faecium 1,231,408]
 gi|258614263|ref|ZP_05712033.1| peptide deformylase [Enterococcus faecium DO]
 gi|260559510|ref|ZP_05831691.1| formylmethionine deformylase [Enterococcus faecium C68]
 gi|261206661|ref|ZP_05921359.1| formylmethionine deformylase [Enterococcus faecium TC 6]
 gi|289565022|ref|ZP_06445476.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|293553674|ref|ZP_06674298.1| peptide deformylase [Enterococcus faecium E1039]
 gi|293563684|ref|ZP_06678125.1| peptide deformylase [Enterococcus faecium E1162]
 gi|293570096|ref|ZP_06681176.1| peptide deformylase [Enterococcus faecium E1071]
 gi|294614918|ref|ZP_06694809.1| peptide deformylase [Enterococcus faecium E1636]
 gi|294618610|ref|ZP_06698149.1| peptide deformylase [Enterococcus faecium E1679]
 gi|294623686|ref|ZP_06702519.1| peptide deformylase [Enterococcus faecium U0317]
 gi|314938232|ref|ZP_07845532.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|314943129|ref|ZP_07849927.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|314949326|ref|ZP_07852668.1| peptide deformylase [Enterococcus faecium TX0082]
 gi|314952260|ref|ZP_07855274.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|314992116|ref|ZP_07857566.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|314996298|ref|ZP_07861354.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|68195808|gb|EAN10244.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257814065|gb|EEV42823.1| formylmethionine deformylase [Enterococcus faecium 1,230,933]
 gi|257818221|gb|EEV45549.1| formylmethionine deformylase [Enterococcus faecium 1,231,502]
 gi|257821895|gb|EEV49025.1| formylmethionine deformylase [Enterococcus faecium 1,231,501]
 gi|257828038|gb|EEV54664.1| formylmethionine deformylase [Enterococcus faecium 1,231,410]
 gi|257830532|gb|EEV57139.1| formylmethionine deformylase [Enterococcus faecium 1,231,408]
 gi|260074609|gb|EEW62930.1| formylmethionine deformylase [Enterococcus faecium C68]
 gi|260079154|gb|EEW66847.1| formylmethionine deformylase [Enterococcus faecium TC 6]
 gi|289163229|gb|EFD11075.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|291587468|gb|EFF19352.1| peptide deformylase [Enterococcus faecium E1071]
 gi|291592204|gb|EFF23822.1| peptide deformylase [Enterococcus faecium E1636]
 gi|291595129|gb|EFF26467.1| peptide deformylase [Enterococcus faecium E1679]
 gi|291596901|gb|EFF28119.1| peptide deformylase [Enterococcus faecium U0317]
 gi|291602249|gb|EFF32477.1| peptide deformylase [Enterococcus faecium E1039]
 gi|291604368|gb|EFF33861.1| peptide deformylase [Enterococcus faecium E1162]
 gi|313589542|gb|EFR68387.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|313593330|gb|EFR72175.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|313595602|gb|EFR74447.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|313598137|gb|EFR76982.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|313642428|gb|EFS07008.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|313644275|gb|EFS08855.1| peptide deformylase [Enterococcus faecium TX0082]
          Length = 163

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+R ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ VI
Sbjct: 1   MRYPILIHPNDKLKRTAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +          INP+II    + S+  EGCLSIP     VKR+  +TVRY D + + 
Sbjct: 61  EVDE----GEKFELINPEIIEAKGE-SLDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|328957297|ref|YP_004374683.1| peptide deformylase [Carnobacterium sp. 17-4]
 gi|328673621|gb|AEB29667.1| peptide deformylase [Carnobacterium sp. 17-4]
          Length = 176

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 5/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +P+ +L   ++ +E+I  +I+ L+++M + M + DGIG+AA Q+    RL +
Sbjct: 13  MSVLPILTYPNALLTTPTKEVEEITDEIIQLLEDMHDTMIANDGIGIAAPQVSSNLRLAL 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ + +        INP+I+  + +  +  EGCLS P+    +KR+  I +R+ D N  
Sbjct: 73  VEIDEESG---LFEMINPQIVQSTGET-IDVEGCLSFPEVYGTIKRADTIVLRFYDRNGD 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH-LSRLKRDMITKKMSK 164
              + AD  LA   QHEL+HL+G LF D  + ++K + +   M  
Sbjct: 129 EFEVEADDYLARAFQHELEHLDGKLFTDKIIQKIKPEDLESYMEA 173


>gi|306836963|ref|ZP_07469913.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
 gi|304567146|gb|EFM42761.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
          Length = 207

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  +P+VI  +P+L + + P+E+    + ++  LI +M E M    G+GLAA Q+G+  R
Sbjct: 1   MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60

Query: 58  LVVIDLQDHAHRK-----------------NPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           L V    D                      NP++  +    T   D     EGCLS+P  
Sbjct: 61  LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                R+ +  V   D +     +   G  A CLQHE  HL+G ++ D L    +    K
Sbjct: 121 GFPTGRADWARVTGKDEHGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKRQAKK 180

Query: 161 KMSK 164
            + +
Sbjct: 181 AIKR 184


>gi|187778789|ref|ZP_02995262.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC
           15579]
 gi|187772414|gb|EDU36216.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC
           15579]
          Length = 178

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L+RVS+ +E I+ +I  +I+++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAVREILQVGDKTLKRVSKKVECIDDEIKGIIEDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+   +R+ P++ INPK +         QEGCLS P Y   V R   + +  ++   +
Sbjct: 83  IDLR---NRQEPIILINPKFLKRIG-KEESQEGCLSYPGYEGIVIRPRRVVIIGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|126726108|ref|ZP_01741950.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
 gi|126705312|gb|EBA04403.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
          Length = 165

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P + +PD  LR  +  +  I+ +I  + D+M++ M +  G+GLAA QIGV  RL V+
Sbjct: 1   MIRPTIPWPDQCLRSKANTVGDISDEIRAIWDDMIDTMEAMPGVGLAAPQIGVSLRLCVV 60

Query: 62  DLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  D   R   +   +P  +    D+   ++E   ++P   A + R A +TV Y D   +
Sbjct: 61  DASD--ERGQTIRMADPDFVGAQGDELRDHEEASPNLPGVSAKITRPAKVTVEYTDDKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                 +GL AT +QH+LDHLNG ++ D+LS+  RDM+ ++  K
Sbjct: 119 RVRKTLEGLWATSVQHQLDHLNGRMYFDNLSKTNRDMLLRRAKK 162


>gi|206603587|gb|EDZ40067.1| Polypeptide deformylase [Leptospirillum sp. Group II '5-way CG']
          Length = 177

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 3/165 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ + DP L   S  + +I+ +I +L+  M E++Y   GIG+AA Q+G   R  V D+  
Sbjct: 6   ILSYGDPRLLVKSTEVTRIDQEISDLVRGMFELLYRVPGIGIAAPQVGCNMRFFVFDMNR 65

Query: 66  HA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            A    + P+  INP I +  +     +EGCLS P     V+R+  I ++ +D   +  +
Sbjct: 66  RADPGSRTPVTIINPVI-SAKEGSITQEEGCLSFPGIFVPVERALRIEIKGVDMEGKDLV 124

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +  +GL A  +QHE+DHL G+L  +H++R  +  + K++  + ++
Sbjct: 125 LEGEGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEIRAIEKI 169


>gi|194477103|ref|YP_002049282.1| peptide deformylase [Paulinella chromatophora]
 gi|171192110|gb|ACB43072.1| peptide deformylase [Paulinella chromatophora]
          Length = 201

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              +       LR  ++ I +IN ++ ++  +ML  MY+  GIGLAA Q+G+  +L+VID
Sbjct: 30  ILEIHKLGSDKLRTSAKRIMRINEEVRDIARDMLRSMYAAKGIGLAAPQVGINKQLIVID 89

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +        P++ INP+II  +   + Y+EGCLSIP    DV R + I V + D     +
Sbjct: 90  IDLENSTTPPIILINPEIIASNASLNTYEEGCLSIPGVYLDVVRPSIIEVSFRDEQDFPR 149

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL---SRLKRDMITKKMSKL 165
            +  DGLLA C+QHE+DHL G+LF+D +   SRL+ +++   + K+
Sbjct: 150 CLKTDGLLARCIQHEMDHLKGVLFVDRVKDESRLEEELVKNNLRKV 195


>gi|326790873|ref|YP_004308694.1| peptide deformylase [Clostridium lentocellum DSM 5427]
 gi|326541637|gb|ADZ83496.1| peptide deformylase [Clostridium lentocellum DSM 5427]
          Length = 149

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 9/151 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +      + +LR++S+P++  +  +  L+D+M E MY  +G+G+AA Q+G+L R  +
Sbjct: 1   MAIR---TEKEEVLRKISKPVKSFDESLWTLLDDMKETMYLAEGVGIAAPQVGLLKRAFI 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +      P+ F+NP+I+    +  + +EGCLS+P     V+R  ++ +R  D N  
Sbjct: 58  VDIGE-----GPVEFVNPEILAVEGE-QLGEEGCLSVPKRYGTVRRPNYVKMRAQDRNGN 111

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I     +A  + HE DHL G LF+D + 
Sbjct: 112 VFEIEGKEFMARAMLHEFDHLEGKLFVDLVE 142


>gi|310829317|ref|YP_003961674.1| peptide deformylase 1 [Eubacterium limosum KIST612]
 gi|308741051|gb|ADO38711.1| peptide deformylase 1 [Eubacterium limosum KIST612]
          Length = 151

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLV 59
           M  + +  FPD IL +  RP+E I+   + LI +M E MY     G LAA Q+GVL R+V
Sbjct: 1   MAIRQIRKFPDDILHKKCRPVETIDKRTLELIKDMTETMYQLPNCGGLAANQVGVLKRVV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +  ++      +NPKII    +  V  EGC+S PD    VKR   + V Y     
Sbjct: 61  VIDVGEGLYQ-----LVNPKIIEAEGERIVV-EGCMSSPDVWGKVKRPERVVVEYTTPEG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +     ADGLLA C  HELDHL+GI F D +
Sbjct: 115 EVLQKEADGLLAKCFCHELDHLDGIFFTDKV 145


>gi|323487022|ref|ZP_08092334.1| peptide deformylase [Clostridium symbiosum WAL-14163]
 gi|323692064|ref|ZP_08106311.1| peptide deformylase [Clostridium symbiosum WAL-14673]
 gi|323399670|gb|EGA92056.1| peptide deformylase [Clostridium symbiosum WAL-14163]
 gi|323503864|gb|EGB19679.1| peptide deformylase [Clostridium symbiosum WAL-14673]
          Length = 159

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 5/147 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L +  +P++++      LI++M E MY  +G+GLAA Q+G+  ++VV
Sbjct: 1   MAIRSIRTMGDEVLTKECKPVKEMTEHTAELIEDMFETMYEANGVGLAAPQVGIRKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D     N  V INP+I+          EGCLS+P     V R   + V+ ++   +
Sbjct: 61  IDVDD----GNQYVLINPEIVETEGS-QTGSEGCLSVPGKTGVVTRPEKVKVKALNEKME 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
              +  +GLLA  + HE DHL G L++
Sbjct: 116 EFELEGEGLLARAICHECDHLKGQLYV 142


>gi|209549461|ref|YP_002281378.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535217|gb|ACI55152.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 164

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   +S +  L D++L  M +  G+G+ A  IGV  RL V
Sbjct: 1   MPIRPILRYPHPGLKTVCAPVTVFDSSLAALADDLLATMRAAPGVGITAAHIGVFTRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +   +++NP+I  FS +   + EG +S+P    +V R   I  RY D    
Sbjct: 61  LELDKTDGVR---LYVNPEITWFSKETMSHAEGSVSMPGATDEVTRPRSIRFRYQDAEGG 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                AD  LA C+QHE+D LNGI ++  LSRLKRD + KK  K
Sbjct: 118 MHEDVADDFLAICIQHEVDQLNGIFWLQRLSRLKRDRLVKKWEK 161


>gi|104782988|ref|YP_609486.1| peptide deformylase [Pseudomonas entomophila L48]
 gi|95111975|emb|CAK16702.1| peptide deformylase 2 [Pseudomonas entomophila L48]
          Length = 178

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+ +    ++++  LID+M E M    G+GLAA QIG+  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPEHMLGSAELRQLIDDMFETMAHVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   S +     EGCLS+P  R  V R   I+  
Sbjct: 61  VIFGFERSERYPDAEAVPRTILLNPVITPMSTEVEDGWEGCLSVPGLRGVVPRYKHISYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D +      +ADG  A  +QHE DHL G L+   +    +   T+ +
Sbjct: 121 GVDPDGNPIDRFADGFHARVVQHECDHLIGRLYPSRIQDFSKFGYTEVL 169


>gi|118475317|ref|YP_892810.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414543|gb|ABK82963.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40]
          Length = 172

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 94/157 (59%), Gaps = 4/157 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PD  L   S  + K ++++   +D+M + M + +GIGLAA+Q+G   R+ +I
Sbjct: 1   MILDVITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFII 60

Query: 62  DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L    +   + + +  INPK I+   +  VYQEGCLS+P Y  DVKR+  I +++ D  
Sbjct: 61  NLINEDEVQDKNDLLEIINPKFISKDGEI-VYQEGCLSVPGYYEDVKRAKDIKIQFQDRF 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + + ADGLL+  +QHE DHL+G LFI+ +   KR
Sbjct: 120 GNLKELEADGLLSVAIQHENDHLDGHLFIEKIGFNKR 156


>gi|297560923|ref|YP_003679897.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296845371|gb|ADH67391.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 219

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
            + + +  + +L R    +      ++++  LID+M   MY+ +G+GLA  Q+GV  R+ 
Sbjct: 31  VRRITVTGEEVLHRRGVDVAPQMWGSAELAGLIDDMFVTMYAAEGVGLAGSQVGVDLRVF 90

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           V D  D    ++    +NP +     D    V  EGCLS+P   AD+ R+   TVR +D 
Sbjct: 91  VYDCPDDDGVRHVGHVVNPVLDERDPDDAVVVESEGCLSVPGPHADLGRAEHATVRGVDR 150

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +    ++   G  A CLQHE DH  G L++D LS  +R  + KKM+++ 
Sbjct: 151 DGNPVVVSGSGYFARCLQHETDHTLGRLYVDRLSARERKRVLKKMNEMA 199


>gi|15895739|ref|NP_349088.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC
           824]
 gi|23396569|sp|Q97G95|DEF2_CLOAB RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|15025493|gb|AAK80428.1|AE007746_15 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC
           824]
 gi|325509889|gb|ADZ21525.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum EA
           2018]
          Length = 150

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 90/153 (58%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +  D ILR+ SRP+E ++  I  ++D+ML+ + +T +G  +AA Q+G+L +LV
Sbjct: 1   MALRQIRLSEDEILRKKSRPVEVVDDKIRQILDDMLDTLQNTENGAAIAAPQVGILKQLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VI   +   +      +NPKI+    +  V  EGCLSIP+    +KR   +TV  ++ N 
Sbjct: 61  VIATGEDIIK-----LVNPKIVKKEGEQEVV-EGCLSIPNVYGKLKRPKKVTVEALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +   +  +G LA C  HE+DHL+GILF D ++ 
Sbjct: 115 EKITLTGEGFLAKCFCHEIDHLDGILFTDLVTE 147


>gi|308051095|ref|YP_003914661.1| peptide deformylase [Ferrimonas balearica DSM 9799]
 gi|307633285|gb|ADN77587.1| peptide deformylase [Ferrimonas balearica DSM 9799]
          Length = 175

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 6/157 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +    +PILR+ +RP+    + +I  L   ML  M +  G+G+AA Q+    RL+
Sbjct: 1   MTPMAIAQLGEPILRQRARPVSDATAAEIQTLWQRMLVTMEAAGGVGIAAPQVFEPLRLM 60

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +I  + +A   +     P+V INP+I+  S +   + EGCLS+P  R  V+R   + VRY
Sbjct: 61  IIASRPNARYPDAPQMDPVVLINPEILNTSGELVSFVEGCLSVPGIRGTVRRPDNVEVRY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +D   Q Q +   G  A    HE DHL G  F+D + 
Sbjct: 121 LDTQGQPQQLSLSGFPARIFLHEFDHLEGRTFLDQVD 157


>gi|225849674|ref|YP_002729908.1| peptide deformylase [Persephonella marina EX-H1]
 gi|225646510|gb|ACO04696.1| peptide deformylase [Persephonella marina EX-H1]
          Length = 169

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 96/170 (56%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M K  ++ +PD  L++VS+P+E    D  + ++ +L  M ++  G+G+AA Q+    + +
Sbjct: 1   MEKFEILTYPDERLKKVSKPVEDFGRDFKDFVERLLYTMRNSPAGVGIAAPQVNRHIQTI 60

Query: 60  VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++D  ++ H+ N      M+  NP+II +  +  + +EGCLS+PD+  +VKR  +I V  
Sbjct: 61  IVDASEYKHKYNKTNHGLMILSNPRIIAYDGEIVI-REGCLSVPDFTGNVKRHYWIKVEA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            D +        +G  A  +QHE+DHL G LF+D +   K D+  +K+ K
Sbjct: 120 EDIDGNTITFDTEGFEAVVIQHEMDHLKGKLFLDRVVSPK-DIFKRKVYK 168


>gi|313497652|gb|ADR59018.1| Def_2 [Pseudomonas putida BIRD-1]
          Length = 178

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+ +    ++++  LID+M E M    G+GLAA Q+G+  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   S +     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D        +ADG  A  +QHE DHL G L+   +    R   T+ +
Sbjct: 121 GIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRIQDFARFGYTEVL 169


>gi|329120996|ref|ZP_08249627.1| peptide deformylase [Dialister micraerophilus DSM 19965]
 gi|327471158|gb|EGF16612.1| peptide deformylase [Dialister micraerophilus DSM 19965]
          Length = 153

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 9/156 (5%)

Query: 5   PLVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
            +V     +LR V++P+ +        + +LI +M + MY+ +G+GLAA QIG+  R+ V
Sbjct: 3   EVVKVGKAVLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFV 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +        V+INP+     D   +  EGCLS+ D   +V+R A + V+Y D   +
Sbjct: 63  ADCNEGFD-----VYINPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            +   A GL A C+QHE+DHLNG LFID    L + 
Sbjct: 118 RKQKKATGLFARCVQHEIDHLNGTLFIDKAITLNKR 153


>gi|282854675|ref|ZP_06264010.1| peptide deformylase [Propionibacterium acnes J139]
 gi|282582257|gb|EFB87639.1| peptide deformylase [Propionibacterium acnes J139]
 gi|314966213|gb|EFT10312.1| peptide deformylase [Propionibacterium acnes HL082PA2]
 gi|314981979|gb|EFT26072.1| peptide deformylase [Propionibacterium acnes HL110PA3]
 gi|315090890|gb|EFT62866.1| peptide deformylase [Propionibacterium acnes HL110PA4]
 gi|315095103|gb|EFT67079.1| peptide deformylase [Propionibacterium acnes HL060PA1]
 gi|315104332|gb|EFT76308.1| peptide deformylase [Propionibacterium acnes HL050PA2]
 gi|327328118|gb|EGE69887.1| peptide deformylase [Propionibacterium acnes HL103PA1]
          Length = 200

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 3/168 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +  + + +L   +RP+ + + D+  L+ +M   M + DG+GLAA Q+GV   L V   
Sbjct: 22  RRVTRWGESVLHAQTRPVTEFDEDLTTLVRDMFATMNAADGVGLAATQVGVDLSLFVYIC 81

Query: 64  QDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +  +   F NP +              EGCLS P     + R    T    D    
Sbjct: 82  PDANNVVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGN 141

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +   G  A CLQHE DH NGI+F D LS+  R  + ++   +  L
Sbjct: 142 DITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189


>gi|256424099|ref|YP_003124752.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
 gi|256039007|gb|ACU62551.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
          Length = 191

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 96/179 (53%), Gaps = 14/179 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+V +  PILR+   P++K    +  LI+NM   + + +G GLA  QI +  R+ +ID +
Sbjct: 2   PIVPYGSPILRKQCSPVDKNYDGLDKLIENMWHTLENANGSGLATPQINLPIRIFIIDSE 61

Query: 65  DHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
              +  NP               VFINP+I  +S+      EGCLSIP   A V R   +
Sbjct: 62  TSFNTMNPEERKVHFEGDNGIREVFINPEITEYSEAKCDDLEGCLSIPGVAAIVSRPYAV 121

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + Y D N Q      +GL A  +QHE DH+ G L++D+LS LK  ++TKK++++ + R
Sbjct: 122 KIEYYDRNFQKHTKAFNGLTARIIQHEFDHIEGRLYLDYLSSLKMKLLTKKLAQIKKGR 180


>gi|86604999|ref|YP_473762.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
 gi|86553541|gb|ABC98499.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
          Length = 175

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 7/155 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + L    DPIL +V+ P+ +     + NLI+ ML  +    G+GLAA Q+G   +++
Sbjct: 1   MTLR-LRQLGDPILTQVAEPVAEFGTPALQNLIEEMLATLKEAQGVGLAAPQVGFPLQVI 59

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++  + +    +     P+V +NP+ +  S++  +  EGCLS+P+ R  V RS  + V Y
Sbjct: 60  IVASRPNPRYPDAPQMEPLVMVNPRPLACSEEQVLGWEGCLSVPNCRGLVARSREVEVEY 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
                  Q +      A   QHE DHL G LF+D 
Sbjct: 120 HTPEGSRQRVVWRDFPARIFQHEYDHLRGRLFLDR 154


>gi|296116575|ref|ZP_06835185.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976787|gb|EFG83555.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 178

 Score =  170 bits (431), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 8/177 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+L R +  +      DI++L+ +M+E M    G+GLAA Q+    R+ 
Sbjct: 1   MTLLKIARMGHPVLLRRADAVTDPTAPDIVHLVADMIETMEDAGGVGLAAPQVHRSCRVF 60

Query: 60  VIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           V  + D             P V INP +    ++  +  EGCLSIP  R  V R   +  
Sbjct: 61  VYRVPDTRSSGAPDDQPCGPQVLINPHLTPIGEETVLRLEGCLSIPGLRGWVPRHTRVAY 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              D   +     A G LA  +QHE DHLNGIL+   ++ L +     +M++  + +
Sbjct: 121 HGYDAQGRQVKGTASGFLANVMQHEYDHLNGILYPMRMNDLAKMGFDTEMARYGEEQ 177


>gi|75762657|ref|ZP_00742499.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74489856|gb|EAO53230.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 156

 Score =  170 bits (431), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MPVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   +      INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDVDDDTGKIE---LINPSILEKRGE-QVGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++ A+G LA  +QHE+DHL+G+LF   ++R
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148


>gi|194014710|ref|ZP_03053327.1| peptide deformylase [Bacillus pumilus ATCC 7061]
 gi|194013736|gb|EDW23301.1| peptide deformylase [Bacillus pumilus ATCC 7061]
          Length = 160

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+V+ P  +L + + P++  +  +  L+D+M + M   DG+GLAA QIG+  R+ V
Sbjct: 1   MAVKPIVMHPAEVLEQKAEPVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   R +    +NP+++          EGCLS P     V+R +++ V+  D   +
Sbjct: 61  VDIGEEPGRID---LVNPEVLEIKGS-QTDIEGCLSFPSLYGTVERPSYVKVKAFDKKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I A+G LA  L HE+DHL+GILF   + +   +    +M 
Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFTSKIIQTYTEKELAEME 159


>gi|303233239|ref|ZP_07319911.1| peptide deformylase [Atopobium vaginae PB189-T1-4]
 gi|302480629|gb|EFL43717.1| peptide deformylase [Atopobium vaginae PB189-T1-4]
          Length = 183

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 70/164 (42%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             K +V FP PIL+ V  P++ I SDI  L  +ML+VMY+TDG GLAA QIG   RLVVI
Sbjct: 6   AYKEMVCFPSPILQTVCTPVKHITSDIKELAHHMLDVMYATDGCGLAAPQIGETIRLVVI 65

Query: 62  DLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+       KNP V +NP I+T      +  EGCLS P     V R + +     + + +
Sbjct: 66  DVDWSSTSAKNPYVLVNPTIVTADGKDRLMPEGCLSYPGIMVGVTRPSHVICEAYNLDGE 125

Query: 121 HQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
                A G L+A CLQHE DH+NGI   DHL  L++    K+  
Sbjct: 126 CMRYEATGNLMAACLQHECDHINGITIPDHLPPLEKIEKLKEYK 169


>gi|327194673|gb|EGE61521.1| peptide deformylase protein [Rhizobium etli CNPAF512]
          Length = 164

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   ++ +  L D++L  M +  G+G+ A  IGV  R++V
Sbjct: 1   MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +   +++NP I   S +  ++ EG +S+P    DV R   I  RY D + +
Sbjct: 61  LELGRADGVR---LYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161


>gi|254436758|ref|ZP_05050252.1| peptide deformylase [Octadecabacter antarcticus 307]
 gi|198252204|gb|EDY76518.1| peptide deformylase [Octadecabacter antarcticus 307]
          Length = 165

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++  + +P  ILR  +  + +I  DI  L D M++ M +  G+GLAA Q+GV  RL V
Sbjct: 1   MPRRQFIPWPAKILRTPAAEVPEITDDICALWDEMIDAMDAMPGVGLAAPQLGVSLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D   R   +   NP I+  S +  +++E   ++    A ++R   +TVR+M+    
Sbjct: 61  VDASDK--RGQAIRMANPIILHASHELRLHEEASPNLVGMSASLERPRAVTVRFMNEAGM 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +      GL AT +QH++DHL+G ++ D LSR KRDM+ KK  KL
Sbjct: 119 YDRQDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163


>gi|15828039|ref|NP_302302.1| peptide deformylase [Mycobacterium leprae TN]
 gi|221230516|ref|YP_002503932.1| peptide deformylase [Mycobacterium leprae Br4923]
 gi|17432941|sp|Q9CBI2|DEF_MYCLE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767596|sp|B8ZSF6|DEF_MYCLB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|13093592|emb|CAC30884.1| polypeptide deformylase [Mycobacterium leprae]
 gi|219933623|emb|CAR72026.1| polypeptide deformylase [Mycobacterium leprae Br4923]
          Length = 197

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 12/175 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P++         ++  LI  M + M +  G+GLAA QIG  
Sbjct: 1   MAIAPIRIVGDPVLHTPTAPVQVAADGSLPANLNGLISTMYDTMDAAHGVGLAANQIGYG 60

Query: 56  YRLVVIDLQDHAHR--KNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  +   +  +   V INP     +I     D     EGCLS+P     + R+ 
Sbjct: 61  LRVFVYDCAEDCRQTARRRGVVINPILETSEIPETMPDPDTDNEGCLSVPGESFPIGRAQ 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +  V  +D +         GL A  LQHE  HL+G L++D+L         + + 
Sbjct: 121 WARVTGLDADGNPVTTEGTGLFARMLQHETGHLDGFLYLDYLIGRHARSAKRAIK 175


>gi|317106741|dbj|BAJ53237.1| JHL06P13.18 [Jatropha curcas]
          Length = 274

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 17/172 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +R ++     +  I  +ID+M++ M    G+GLAA QIGV  R++V+
Sbjct: 87  DIVKAGDPVLHEPAREVDPEEIGSERIQKIIDDMIKAMRMAPGVGLAAPQIGVPLRIIVL 146

Query: 62  DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +      R  P              +V +NPK+   S+  + + EGCLS+  +RA V+R 
Sbjct: 147 EDTKEYIRYAPKEETKAQDRRPFDLLVILNPKLEKKSNRTAFFFEGCLSVDGFRAVVERY 206

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             + V  +    Q   + A G  A  LQHE DHL+G L++D +       I 
Sbjct: 207 LDVEVTGLSRYGQPIKVNASGWQARILQHECDHLDGTLYVDKMVPRTFRTIE 258


>gi|187777638|ref|ZP_02994111.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC
           15579]
 gi|187774566|gb|EDU38368.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC
           15579]
          Length = 150

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + IF D ILR+ S+ +E ++  I  ++++M + MY+T +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRIFDDEILRKKSKVVEVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    +KR   +T++ ++   
Sbjct: 61  VIDMG-----QGLIKLVNPKIINKEGTQEVI-EGCLSIPNTWGKLKRPKKVTIQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|330957627|gb|EGH57887.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 179

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIGV  +L
Sbjct: 1   MIRNILKMGDERLLRIAPPVPTEMFGSSELNTLIADMFETMHSVSGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   S +     EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERNERYPQAEAVPQTILLNPVITPLSPELEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   +     A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPEGKPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|84514539|ref|ZP_01001903.1| peptide deformylase [Loktanella vestfoldensis SKA53]
 gi|84511590|gb|EAQ08043.1| peptide deformylase [Loktanella vestfoldensis SKA53]
          Length = 169

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 2/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  V +P P+LR  + P+  I  +I  L D M+  M +  G+GLAA Q+GV   L V
Sbjct: 1   MTHRAYVQWPHPVLRTPAAPVAAITDEIRALWDEMIVAMDTMPGVGLAAPQLGVGLALAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S +F  ++EG  ++P   A + R   +TVR+++ + +
Sbjct: 61  VDASTM--RGQAVRMANPEILHSSVEFRDHEEGSPNLPGVWARISRPRAVTVRFLNADGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            +     GL AT +QH++DHL G +FID +++++RDM+
Sbjct: 119 VEERDFVGLWATSVQHQIDHLAGRMFIDRMTKVRRDML 156


>gi|257871146|ref|ZP_05650799.1| formylmethionine deformylase [Enterococcus gallinarum EG2]
 gi|257805310|gb|EEV34132.1| formylmethionine deformylase [Enterococcus gallinarum EG2]
          Length = 163

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 6/165 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LRR  +P+  I  +++ L+++M E M + DG+G+AA QIG   ++ ++
Sbjct: 1   MRYPIIIHPDDQLRRKPKPVSMITDELVQLLEDMYETMVAHDGVGIAAPQIGKNLQVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +          INP+II  S + SV  EGCLSIP     VKR+  ITVRY D   + 
Sbjct: 61  EVDEEDR----FELINPEIIESSGE-SVDVEGCLSIPHTYGTVKRADEITVRYFDREGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKL 165
             + A G LA  +QHE+DHLNG+LFID +  ++    + + M + 
Sbjct: 116 MEVQAFGYLARAIQHEIDHLNGVLFIDKMIDKIPESELEQYMEEH 160


>gi|197302409|ref|ZP_03167465.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC
           29176]
 gi|197298530|gb|EDY33074.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC
           29176]
          Length = 159

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D IL +  + ++K+      LI +ML+ MY   G+GLAA Q+G+L ++VV
Sbjct: 1   MAIREVRKIGDEILGKQCKEVKKMTIRTKILIGDMLDTMYEKMGVGLAAPQVGILKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+II  S +    +EGCLS+P     V R  ++ VR ++   +
Sbjct: 61  IDVGE-----GPIVLINPEIIETSGE-QTGEEGCLSVPGKWGIVTRPNYVKVRALNEEME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I  +GLLA    HE+DHL+G L++D +  
Sbjct: 115 EFEIEGEGLLARAFCHEIDHLSGHLYVDKVED 146


>gi|255746035|ref|ZP_05419982.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262162126|ref|ZP_06031141.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
 gi|255735789|gb|EET91187.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262028201|gb|EEY46859.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
 gi|327485372|gb|AEA79778.1| Peptide deformylase [Vibrio cholerae LMA3894-4]
          Length = 145

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 67/145 (46%), Positives = 96/145 (66%), Gaps = 4/145 (2%)

Query: 26  SDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
           + +  LID++L+ +Y+T +GIGLAA Q+G    +VVIDL D  +R  P+V INPK+++ S
Sbjct: 2   ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLSD--NRDQPLVLINPKVVSGS 59

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
           +   + QEGCLS+PDY ADV+R   + V  +D   +   I     LA  +QHE+DHL+G 
Sbjct: 60  N-KEMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGN 118

Query: 145 LFIDHLSRLKRDMITKKMSKLVQLR 169
           LFID+LS LK+ M  KK+ K V+ R
Sbjct: 119 LFIDYLSPLKQQMAMKKVKKHVKNR 143


>gi|190891919|ref|YP_001978461.1| peptide deformylase [Rhizobium etli CIAT 652]
 gi|190697198|gb|ACE91283.1| peptide deformylase protein [Rhizobium etli CIAT 652]
          Length = 164

 Score =  169 bits (430), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+   ++ +  L D++L  M +  G+G+ A  IGV  R++V
Sbjct: 1   MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +   +++NP I   S +  ++ EG +S+P    DV R   I  RY D + +
Sbjct: 61  LELDRADGVR---LYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+  LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161


>gi|289803413|ref|ZP_06534042.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 135

 Score =  169 bits (430), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 93/138 (67%), Gaps = 3/138 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N  
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGN 117

Query: 121 HQIIYADGLLATCLQHEL 138
              + ADGLLA C+QHE+
Sbjct: 118 PFELEADGLLAICIQHEM 135


>gi|217967822|ref|YP_002353328.1| peptide deformylase [Dictyoglomus turgidum DSM 6724]
 gi|254767580|sp|B8E0X7|DEF_DICTD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|217336921|gb|ACK42714.1| peptide deformylase [Dictyoglomus turgidum DSM 6724]
          Length = 153

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 6/148 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +    DPIL+  ++ +EKI+  + NL+ +M+E M  ++G+GLAA Q+G   R++V+
Sbjct: 1   MIMEIRKIGDPILKIKAKKVEKIDEKVKNLVRDMIETMKFSNGVGLAAPQVGESLRIIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D ++     NP+ FINP+I+    +   Y EGCLS+P     +KR+  I  +  D   + 
Sbjct: 61  DYEE-----NPIAFINPEILEMDGEVLDY-EGCLSVPGVEVPIKRAERIIFKAQDLQGRT 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDH 149
           +   A GLLA  +QHE+DHL GIL +D 
Sbjct: 115 KRYKAKGLLARVIQHEVDHLEGILILDR 142


>gi|258542784|ref|YP_003188217.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633862|dbj|BAH99837.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636921|dbj|BAI02890.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639974|dbj|BAI05936.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643030|dbj|BAI08985.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646085|dbj|BAI12033.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649138|dbj|BAI15079.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652125|dbj|BAI18059.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655182|dbj|BAI21109.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-12]
          Length = 174

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+LR+ ++ + +    DI  LI +M E +  + G+GLAA Q+ V  RL 
Sbjct: 1   MAVLAIARMGHPVLRQPAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLF 60

Query: 60  VIDLQ--DHAHRKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +  +         +P +     INP +    D+  +  EGCLS+PD R +V R   I   
Sbjct: 61  LYSVPLARSEGEDDPSLPVQALINPVLKPVDDEKLLRTEGCLSLPDLRGEVPRYKRIWYA 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D + Q     A G  A  +QHE+DHL+GIL+   ++ + +    K++++
Sbjct: 121 GFDPHGQKVEGMATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKELTR 171


>gi|16078635|ref|NP_389454.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309447|ref|ZP_03591294.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313772|ref|ZP_03595577.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318696|ref|ZP_03599990.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322967|ref|ZP_03604261.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|2499922|sp|P94462|DEF1_BACSU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|1772499|emb|CAA71349.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2337801|emb|CAA74262.1| putative Def protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633944|emb|CAB13445.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 160

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  +L   +  +   +  +  L+D+M + M   DG+GLAA QIG+L R  V
Sbjct: 1   MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++ D   R +    +NP+I+  S +     EGCLS P+   DV R+ ++ VR  +   +
Sbjct: 61  VEIGDDRGRID---LVNPEILEKSGE-QTGIEGCLSFPNVYGDVTRADYVKVRAFNRQGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             I+ A G LA  +QHE+DHL+G+LF   +S+
Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148


>gi|293572654|ref|ZP_06683622.1| peptide deformylase [Enterococcus faecium E980]
 gi|291607240|gb|EFF36594.1| peptide deformylase [Enterococcus faecium E980]
          Length = 163

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 59/149 (39%), Positives = 92/149 (61%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+R ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ +I
Sbjct: 1   MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIALI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +          INP+II    + S+  EGCLSIP     VKR+  +TVRY D + + 
Sbjct: 61  EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|225848346|ref|YP_002728509.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644275|gb|ACN99325.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 168

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M K P++ +PD  L++ S  +     +    ++ +   MY++ G +G+AA Q+    R +
Sbjct: 1   MEKLPILQYPDERLKKKSIEVVDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNNHIRTI 60

Query: 60  VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++D     H+ N +     V  NPKII + +   +++EGC+S+PDY  +VKR  +I V  
Sbjct: 61  IVDTSKSTHKTNKVSHGLMVLSNPKII-YGEGEIIFREGCMSVPDYTGNVKRFYYIKVEA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D N +      +G  A  +QHE+DHL+G +FI+ +   K D+  +K+ K
Sbjct: 120 LDENGKLITFDTEGFEAVVIQHEIDHLDGKVFIEKVVSPK-DIFKRKVYK 168


>gi|258489222|gb|ACV72595.1| peptide deformylase [Pseudomonas syringae pv. cerasicola]
          Length = 169

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 10  PD-PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           PD P+LR+VS  ++K  N ++  L+D+M E M   +G+GLAA QIGV  R++VI+   + 
Sbjct: 8   PDAPLLRKVSAQVDKFSNDELRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIEFSGNE 67

Query: 68  HR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R        P V INP I +     +  +EGC S+P     V R A I     D +  +
Sbjct: 68  ERAPGESPVPPTVLINPVITS-GVGRTEGREGCFSVPGKIGIVPRYATIEYTAQDMDGLN 126

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL---KRDMITKK 161
               A+G  A  +QHE+DHLNGIL+ID  S +   +R+ +  K
Sbjct: 127 VRGKAEGFHARIIQHEVDHLNGILYIDIASEVSLYQREPVASK 169


>gi|157692252|ref|YP_001486714.1| peptide deformylase [Bacillus pumilus SAFR-032]
 gi|157681010|gb|ABV62154.1| formylmethionine deformylase [Bacillus pumilus SAFR-032]
          Length = 160

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+VI P  +L + +  ++  +  +  L+D+M + M   DG+GLAA QIG+  R+ V
Sbjct: 1   MAVKPIVIHPAEVLEQKAESVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ + + R +    +NP+++          EGCLS P     V+R +++ V+  D   +
Sbjct: 61  VDIGEESGRID---LVNPEVLEVKGS-QTDIEGCLSFPSLYGTVERPSYVKVKAFDKKGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I A+G LA  L HE+DHL+GILF   + +   +    +M 
Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFTSKIIQTYTEKELAEME 159


>gi|227552688|ref|ZP_03982737.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257888656|ref|ZP_05668309.1| formylmethionine deformylase [Enterococcus faecium 1,141,733]
 gi|257897388|ref|ZP_05677041.1| formylmethionine deformylase [Enterococcus faecium Com12]
 gi|293378852|ref|ZP_06625007.1| peptide deformylase [Enterococcus faecium PC4.1]
 gi|227178175|gb|EEI59147.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257824710|gb|EEV51642.1| formylmethionine deformylase [Enterococcus faecium 1,141,733]
 gi|257833953|gb|EEV60374.1| formylmethionine deformylase [Enterococcus faecium Com12]
 gi|292642393|gb|EFF60548.1| peptide deformylase [Enterococcus faecium PC4.1]
          Length = 163

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/149 (39%), Positives = 91/149 (61%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I P+  L+  ++PI+ I  + + L+DN+ E M + DGIG+AA Q+G   R+ VI
Sbjct: 1   MRYPILIHPNDKLKIPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +          INP+II    + S+  EGCLSIP     VKR+  +TVRY D + + 
Sbjct: 61  EVDE----GEKFELINPEIIEAKGE-SMDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHL+GILFI+ +
Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144


>gi|282877697|ref|ZP_06286512.1| peptide deformylase [Prevotella buccalis ATCC 35310]
 gi|281300269|gb|EFA92623.1| peptide deformylase [Prevotella buccalis ATCC 35310]
          Length = 176

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 7/163 (4%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-----QDHAH 68
           LR+V++ I      +  LI +M E + S+DGIGLAA QIG   R+VVIDL         +
Sbjct: 2   LRKVAQDITPEYEGLGQLIQDMFETLDSSDGIGLAAPQIGKSIRVVVIDLNVLSDDFPEY 61

Query: 69  RKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
           +     +INP II   +        EGCLSIP     V R+  I V+YMD +      + 
Sbjct: 62  KDFRRAYINPHIIEIDENAPKESMDEGCLSIPGIHEAVSRTTRIHVQYMDEDFTPHDEWI 121

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +G LA  +QHE DHL+G +F+D +S  ++ MI  K+  + Q +
Sbjct: 122 EGYLARVMQHEFDHLDGKMFVDRISPFRKQMIKNKLKGMTQGK 164


>gi|323489535|ref|ZP_08094762.1| peptide deformylase [Planococcus donghaensis MPA1U2]
 gi|323396666|gb|EGA89485.1| peptide deformylase [Planococcus donghaensis MPA1U2]
          Length = 170

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  P+ +L     P+   + ++  L+D+M E M  +DG+G+AA Q+G   R+ +
Sbjct: 1   MAIRTVVKHPNKVLETNCEPVTVFDKNLSVLLDDMHETMVESDGVGIAAPQVGEAVRVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D ++      P+  +NP+++ F        EGCLS P    +V+R   I ++  + +  
Sbjct: 61  VDFREGQE---PIEMVNPELVLFEGA-ETDIEGCLSFPGIFGEVERYDHIKIKAQERDGS 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
              + A+G  A  + HE+DHL+G+LF   +++        +M
Sbjct: 117 WYELEAEGYEARAILHEMDHLDGVLFTSKITKYVTQEELDEM 158


>gi|314923773|gb|EFS87604.1| peptide deformylase [Propionibacterium acnes HL001PA1]
          Length = 200

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 3/168 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +  + + +L   +RP+ + + D+  L+ +M   M +TDG+GLAA Q+GV   L V   
Sbjct: 22  RRVTRWGESVLHAQTRPVTEFDEDLTTLVRDMFATMNATDGVGLAATQVGVDLSLFVYIC 81

Query: 64  QDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +  +   F NP +              EGCLS P     + R    T    D    
Sbjct: 82  PDANNVVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPWGN 141

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +   G  A CLQHE DH NGI+F D LS+  R  + ++   +  L
Sbjct: 142 DITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQHDSVAHL 189


>gi|332653344|ref|ZP_08419089.1| peptide deformylase [Ruminococcaceae bacterium D16]
 gi|332518490|gb|EGJ48093.1| peptide deformylase [Ruminococcaceae bacterium D16]
          Length = 169

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 5/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   +  L +V  P+ K +  + +LID+M E +    G+GLAA Q+G+L R+V+
Sbjct: 3   MAIREILTRGESALTKVCHPVTKFDQKLWDLIDDMKETLAEAGGVGLAAPQVGILRRVVI 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +           +  +NP+I+    +     EGCLS+P     VKR  ++ V+  D   +
Sbjct: 63  V----INEADEVLELVNPEIVAQQGE-QDGLEGCLSVPGLWGFVKRPEWVKVKAQDRFGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                  GL A C  HEL HL+G L+ +   +L
Sbjct: 118 EYEAEGTGLTARCFCHELAHLDGHLYTELTDKL 150


>gi|293189708|ref|ZP_06608424.1| peptide deformylase [Actinomyces odontolyticus F0309]
 gi|292821298|gb|EFF80241.1| peptide deformylase [Actinomyces odontolyticus F0309]
          Length = 212

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 32/182 (17%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L R + PI+  +S++ +L+ +M+E M++  G+GLAA Q+GV  ++ V
Sbjct: 1   MSILPICITGEPVLHRAAAPIDSFDSELRDLVADMIETMHAAPGVGLAAPQVGVGSQVFV 60

Query: 61  IDLQDHAH-----------RKNP---------MVFINP------------KIITFSDDFS 88
                               + P          V +NP             I+    D +
Sbjct: 61  WRYGGAGSFDTQYRDVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIA 120

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           +  EGCLS+P Y   ++R+    +R  D +     + A G LA   QHE DHL G L++D
Sbjct: 121 LESEGCLSVPGYGYPLRRALGAILRGYDVDGNAIEVRARGWLARIFQHEYDHLQGTLYVD 180

Query: 149 HL 150
            L
Sbjct: 181 RL 182


>gi|298491072|ref|YP_003721249.1| peptide deformylase ['Nostoc azollae' 0708]
 gi|298232990|gb|ADI64126.1| peptide deformylase ['Nostoc azollae' 0708]
          Length = 181

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++   +P+L + +  ++ I +  I  LI +++  +Y  + +G+AA Q+   +RL ++  
Sbjct: 10  PIIQLGNPMLVQKAAWVDNIQDEHIQKLIGDLIFTVYQANSVGIAAPQVAESHRLFIVAS 69

Query: 64  QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +    +     P   INPKII +S +     EGCLS+P  R  V R   I + Y D N
Sbjct: 70  RPNTRYPDAPEMKPTAMINPKIIAYSTEVIKGWEGCLSVPGIRGLVPRYQKIEIEYNDRN 129

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + Q       +A   QHE DHL G +F+D +   +  M   +  +
Sbjct: 130 GKIQKQELTDFIARIFQHEYDHLEGKVFLDRVESTEELMTESEYQQ 175


>gi|149911294|ref|ZP_01899915.1| peptide deformylase [Moritella sp. PE36]
 gi|149805609|gb|EDM65611.1| peptide deformylase [Moritella sp. PE36]
          Length = 168

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 90/154 (58%), Gaps = 5/154 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    ++  P+  L   +  +  +++ +  LID+ML+ MY TD GIGLA+ Q+G    +V
Sbjct: 1   MAVLTILTAPNKKLEIPAEKVADVST-VQTLIDDMLDTMYKTDDGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +   R  PMV INP ++   ++    QEGCLSIP Y ADV+R   + V  +D   
Sbjct: 60  VIDISE--GRNEPMVLINPVVVE-GENKESGQEGCLSIPGYYADVERFTKVKVTALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
               I  DG LA  +QHE+DHL G LFID+LS L
Sbjct: 117 NEIEINDDGFLAIAMQHEIDHLKGTLFIDYLSPL 150


>gi|87308719|ref|ZP_01090858.1| peptide deformylase [Blastopirellula marina DSM 3645]
 gi|87288430|gb|EAQ80325.1| peptide deformylase [Blastopirellula marina DSM 3645]
          Length = 194

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 1/148 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P P LR  S+P++++++D+  ++  M E+MY   GIGLAA Q+ +  RL V +L 
Sbjct: 4   EVVHYPHPTLRYQSKPVKRVDADLRKIVAEMFELMYENRGIGLAANQVDLPIRLFVANLS 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +VFINP I +        +EGCLS+P     VKR A I     +   +    
Sbjct: 64  GTKGEGEELVFINPVI-SRPKGNEEEEEGCLSLPQVFGPVKRPAEIQFDAYNLQGELFSQ 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
             DG+LA  +QHE DHL+GI+F D +  
Sbjct: 123 RIDGMLARVVQHETDHLDGIMFFDRMQP 150


>gi|257068124|ref|YP_003154379.1| peptide deformylase [Brachybacterium faecium DSM 4810]
 gi|256558942|gb|ACU84789.1| peptide deformylase [Brachybacterium faecium DSM 4810]
          Length = 188

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I     L + +R + ++  ++  L+ +M E   +  G GLAA Q+G  +RL V
Sbjct: 1   MTVRPITIVGHKALTQRTRRVREVTDELRTLVADMFETNDAASGAGLAAPQVGSRWRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCN 118
               D +      V +NP +  F       +  EGCLS+P       R     V   D +
Sbjct: 61  YSCPDASGTLRRGVVLNPVLERFGGIVLDEETLEGCLSVPGEGFPTARHRGARVTGTDLD 120

Query: 119 AQHQIIYAD-GLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               ++  + G+LA  LQHE+DHL G L++D L+  +R    
Sbjct: 121 GAEVVVEDEGGVLARALQHEVDHLEGSLYLDRLAPARRREAL 162


>gi|32477751|ref|NP_870745.1| peptide deformylase [Rhodopirellula baltica SH 1]
 gi|39930837|sp|Q7UHZ5|DEF_RHOBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|32448305|emb|CAD77822.1| peptide deformylase [Rhodopirellula baltica SH 1]
 gi|327543078|gb|EGF29520.1| peptide deformylase [Rhodopirellula baltica WH47]
          Length = 201

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ FP P LR VSRPI ++++ + ++ D ML++MY  DG+GLAA Q+ +  R+ V +   
Sbjct: 5   IIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVANPTG 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                   V +NP+I     +    QEGCLS+P     VKR   + +R  D         
Sbjct: 65  KRDEGESWVILNPEIDRPKGN-DTAQEGCLSVPGLYGQVKRPKTVRLRGFDLQGNEINQV 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            DG +A  +QHE+DHL+GI+F D +       +   + + 
Sbjct: 124 LDGFMARVVQHEVDHLDGIMFFDRIGEEGLRDLEGHLEEF 163


>gi|254818949|ref|ZP_05223950.1| peptide deformylase [Mycobacterium intracellulare ATCC 13950]
          Length = 197

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++P+          ++  LI ++ + M +  G+GLAA QIGV 
Sbjct: 1   MAVVPIRIVGDPVLHTPTKPVPVAADGSLPAELPALIADLYDTMDAAHGVGLAANQIGVG 60

Query: 56  YRLVVIDLQDHAHRKNPM--VFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   R      V +NP + T        D     EGCLS+P       R+ 
Sbjct: 61  LRVFVYDCADERGRTERRRGVVVNPVLETSEVPETMPDPDNDDEGCLSVPGESFPTGRAK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     +  + L A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGNPVALEGNDLFARMLQHETGHLDGFLYLDRL 162


>gi|330807956|ref|YP_004352418.1| peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376064|gb|AEA67414.1| peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 179

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+  E  +  ++  LID+M + M S  G+GLAA QIGV  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + INP I           EGCLS+P  R  V+R   I   
Sbjct: 61  VIFGFEHSERYPDAEAVPQTILINPLITPLGPQMEEGFEGCLSVPGLRGAVERYQDIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   +  + YA G  A  +QHE DHL G L+   +S   +   T+ M
Sbjct: 121 GFDPKGEPIVRYASGFHARVVQHECDHLIGRLYPSRISDFSKFGFTEVM 169


>gi|158321369|ref|YP_001513876.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
 gi|158141568|gb|ABW19880.1| peptide deformylase [Alkaliphilus oremlandii OhILAs]
          Length = 150

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 88/153 (57%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +  DPILR+ S+ +E ++  I  ++++M E MY T +G GLA  QIG+L RLV
Sbjct: 1   MALREIRLMEDPILRKKSKKVEVVDDKIRQILEDMAETMYHTENGGGLAGPQIGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  M  +NP+I+   +      EGCLSIP+    + R A + V  ++   
Sbjct: 61  VIDMG-----QGLMKLVNPRIV-KEEGTQTVIEGCLSIPNQFGKLARPAKVIVEALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +   I A G LA C  HE+DHLNGILF D ++ 
Sbjct: 115 EEITITATGNLAKCFCHEIDHLNGILFTDLVTE 147


>gi|313201227|ref|YP_004039885.1| peptide deformylase [Methylovorus sp. MP688]
 gi|312440543|gb|ADQ84649.1| peptide deformylase [Methylovorus sp. MP688]
          Length = 169

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 9   FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
             DP+L + + P+   +  ++  LI +M + M   +G G+AA QIGV  R+V+  +    
Sbjct: 1   MGDPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVVIFGVGKNP 60

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A +    V +NP +   +DD     EGCLS+P  R  V R   +     D      
Sbjct: 61  RYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPRYVRLHYTGFDQYGNPI 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                G  A  +QHE DHL+GIL+   +  L
Sbjct: 121 DRLVSGFHARVVQHECDHLDGILYPMRIRDL 151


>gi|26991243|ref|NP_746668.1| peptide deformylase [Pseudomonas putida KT2440]
 gi|32363154|sp|Q88EA7|DEF2_PSEPK RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|24986296|gb|AAN70132.1|AE016653_3 polypeptide deformylase [Pseudomonas putida KT2440]
          Length = 178

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+ +    ++++  LID+M E M    G+GLAA Q+G+  +L
Sbjct: 1   MIRDILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   S +     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQ 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D        +ADG  A  +QHE DHL G L+   +    +   T+ +
Sbjct: 121 GIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRIQDFAKFGYTEVL 169


>gi|296536912|ref|ZP_06898949.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
 gi|296262760|gb|EFH09348.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
          Length = 176

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+L RV+ P+ +  + +I  LI +M E M    G+GLAA Q+ V  R+ 
Sbjct: 1   MAILKIARMGHPVLLRVADPVPDPTDPEIRRLIRDMAETMLDAGGLGLAAPQVHVPLRIF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V    +          +NP+I           EGCLSIP  R +V+R+  I  R +D   
Sbjct: 61  VFRQGETV-----AALVNPEIELLGPPDQRGWEGCLSIPGLRGNVERAQRIAFRGLDVEG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                  +GLLA  +QHE DHLNGIL+   +S 
Sbjct: 116 DSVEGEVEGLLARVMQHEFDHLNGILYPSRMSD 148


>gi|15594411|ref|NP_212199.1| peptide deformylase [Borrelia burgdorferi B31]
 gi|6014950|sp|O51092|DEF_BORBU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2687938|gb|AAC66445.1| polypeptide deformylase (def) [Borrelia burgdorferi B31]
          Length = 172

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/161 (38%), Positives = 93/161 (57%), Gaps = 4/161 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 9   EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 68

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P+VFINP II  S +FS Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 69  KMAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 125

Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
                LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 126 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 166


>gi|166365029|ref|YP_001657302.1| polypeptide deformylase [Microcystis aeruginosa NIES-843]
 gi|166087402|dbj|BAG02110.1| polypeptide deformylase [Microcystis aeruginosa NIES-843]
          Length = 180

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 7/177 (3%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M     +    +PIL++ +  I+ + ++D  NLID+++  + +  G+G+AA Q+    RL
Sbjct: 1   MTQVLTITQLGNPILQQKAAAIDNLLDADCQNLIDSLITTVQAAHGVGIAAPQVARSLRL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++    +    +     P   INP+I+  S++     EGCLS+P+ R  V R  +I V 
Sbjct: 61  FIVASHPNPRYPDAPMMPPTAVINPRILRVSEEMVKGWEGCLSVPNLRGFVPRHQWIEVA 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           Y D N +         +A   QHE DHL GILF+D L+        ++  K+  + +
Sbjct: 121 YCDRNGREIRQVFRDFVARIFQHEYDHLEGILFLDRLASPADLYSEEEYQKISNIAE 177


>gi|297626643|ref|YP_003688406.1| polypeptide deformylase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922408|emb|CBL56980.1| Polypeptide deformylase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 206

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 3/166 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  + + I+R  +RP+   +  +  LI +M + M + DG+GLAA Q+     L V +  D
Sbjct: 16  ITRWDESIMRSQTRPVTTFDDTLAQLIADMFKTMAAADGVGLAAPQVDSDLALFVFNCPD 75

Query: 66  HAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              +    V  NP +             QEGCLS P     + R  F      D      
Sbjct: 76  IHDKLVYGVMCNPVVTLPEGKDRHLVSAQEGCLSWPGAYQSLARPDFAVCEGQDETGAPV 135

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +   GLLA CLQHE DHL+G +F D LS+  R  + ++  +L  L
Sbjct: 136 RVEGTGLLARCLQHETDHLHGTVFGDRLSKRARRRLDQEKEELAPL 181


>gi|225552226|ref|ZP_03773166.1| peptide deformylase [Borrelia sp. SV1]
 gi|225371224|gb|EEH00654.1| peptide deformylase [Borrelia sp. SV1]
          Length = 165

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ +E I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQVENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P+VFINP II  S + S Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 62  KMAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
                LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|260890452|ref|ZP_05901715.1| hypothetical protein GCWU000323_01622 [Leptotrichia hofstadii
           F0254]
 gi|260859694|gb|EEX74194.1| peptide deformylase [Leptotrichia hofstadii F0254]
          Length = 171

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++  P LR  S  ++ ++  +   +D M+ +M   +G+GLAA Q+ +  R  V+    
Sbjct: 3   IVLYGHPTLREKSEKVDAVDDSLRETLDEMVALMRKANGVGLAANQVDIAKRFFVL---- 58

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             H       INP+I+ FS++ +  +EGCLSIP     V R A I V+Y++ N +  +  
Sbjct: 59  -EHEGVVKKVINPEILEFSEEIADMEEGCLSIPGIYKKVNRPAKIKVKYLNENGEEVVEE 117

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            D + A   QHE DH+ GILF D LS + + ++ KK+  L +
Sbjct: 118 LDEMWARAFQHEFDHIEGILFTDKLSVMNKRLVAKKLDVLKK 159


>gi|118443269|ref|YP_877731.1| peptide deformylase [Clostridium novyi NT]
 gi|118133725|gb|ABK60769.1| peptide deformylase [Clostridium novyi NT]
          Length = 158

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 13/170 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V   + +LRR SR IEKI+ +++ LI ++ + +YS DG+GLAA QIGVL R  +
Sbjct: 1   MAIKNIVTADNQLLRRKSRRIEKIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+D     +P++ +NPKI+     +    EGCLS P Y   V R   + V  M+   +
Sbjct: 61  IDLRDGN---DPLILLNPKILKKIGKYE-DAEGCLSYPGYEGVVIRPRKVIVAGMNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A GL+A  + HE DHL+G+L++D         + KKM K+    +
Sbjct: 117 MVQYVATGLMARAICHETDHLDGVLYMD---------LAKKMYKIPTEEE 157


>gi|82701784|ref|YP_411350.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
 gi|82409849|gb|ABB73958.1| Peptide deformylase [Nitrosospira multiformis ATCC 25196]
          Length = 177

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  KP++   DP L  V+R +E     +   L+ +M + M + +G GLAA QIG+  ++V
Sbjct: 1   MPIKPVLKMGDPRLLEVARKVENFSTPEFGALLRDMHDTMEALEGAGLAAPQIGIDLQVV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +  ++       A      V +NP +   ++      EGCLS+P  R  V R A I    
Sbjct: 61  IFGVKRNLRYPDAEEVPYTVLVNPVLTPLTEYMEQDWEGCLSVPGMRGMVPRYARIRYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            D          +G  A  +QHE DHL GIL+   ++  +    T
Sbjct: 121 SDQYGNRIDRTVEGFHARVVQHECDHLQGILYPMRITDFRTFGFT 165


>gi|239945304|ref|ZP_04697241.1| peptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291448765|ref|ZP_06588155.1| peptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291351712|gb|EFE78616.1| peptide deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 219

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               + +  + +LRR  + +      ++  L+D+M        G GLAA QIGV  ++ V
Sbjct: 35  AVHRITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFV 94

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            D+ D    ++    +NP +     +        EGCLS+P     V R     VR  D 
Sbjct: 95  WDITDDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDM 154

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +    +I   G  A CLQHE DHL+G L++D L+R +R    ++M++
Sbjct: 155 DGAPLVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAE 201


>gi|257062237|ref|YP_003140125.1| peptide deformylase [Cyanothece sp. PCC 8802]
 gi|256592403|gb|ACV03290.1| peptide deformylase [Cyanothece sp. PCC 8802]
          Length = 178

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 6   LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           +    +PILR+ ++ I +I + ++  LID ++       G+G+AA Q+    RL ++   
Sbjct: 7   IAELGNPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILASH 66

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    N     P+  INP+I++ S +     EGCLS+P  R  V R  ++ V Y D   
Sbjct: 67  PNPRYPNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDRFG 126

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Q Q       +A   QHELDHLNG++F+D + 
Sbjct: 127 QFQQQKLTDFVARIFQHELDHLNGLVFLDRVE 158


>gi|145220780|ref|YP_001131458.1| peptide deformylase [Mycobacterium gilvum PYR-GCK]
 gi|315442266|ref|YP_004075145.1| peptide deformylase [Mycobacterium sp. Spyr1]
 gi|189083073|sp|A4T2T4|DEF_MYCGI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145213266|gb|ABP42670.1| peptide deformylase [Mycobacterium gilvum PYR-GCK]
 gi|315260569|gb|ADT97310.1| peptide deformylase [Mycobacterium sp. Spyr1]
          Length = 197

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +P+ I  DP+L   + PI       + +D+ +LI ++ + M +  G+GLAA QIGV 
Sbjct: 1   MAVRPICIVGDPVLHTATEPIPVGPDGSLPADLADLITDLYDTMDAAHGVGLAANQIGVN 60

Query: 56  YRLVVIDLQDHAHR--KNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  D   +  +   V +NP + T        D     EGCLS+P       R+ 
Sbjct: 61  KRVFVYDCADARKKTVRRRGVVVNPVLETSEVPETMPDPEDDDEGCLSVPGESFPTGRAD 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D +     I    L A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDADGTPITIEGTDLFARMLQHETGHLDGFLYLDSL 162


>gi|297158757|gb|ADI08469.1| peptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 178

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 9   FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
             + +L R  R + +    ++  LID+M   MY  DG GLAA Q+GV  RL V D  D  
Sbjct: 1   MGEEVLSRPCREVTEFGTPELSALIDDMFLTMYVADGAGLAANQVGVDLRLFVYDCPDDY 60

Query: 68  HRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             ++    INP +      S       EGCLS+P     V R+     R  D +    +I
Sbjct: 61  GIRHVGHIINPVLDLPGPGSRRLVDDFEGCLSVPGAAMAVPRTDRAVARGFDKDGDPLVI 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              G  A CLQHE DH+ G  ++D LS+  R    ++M 
Sbjct: 121 EGLGYFARCLQHETDHVVGHTYLDRLSKRDRKAALRQME 159


>gi|296120519|ref|YP_003628297.1| peptide deformylase [Planctomyces limnophilus DSM 3776]
 gi|296012859|gb|ADG66098.1| peptide deformylase [Planctomyces limnophilus DSM 3776]
          Length = 196

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 7/172 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +  P LR  S P+ +INS++   I  M E+MY+  GIGLA+ Q+ +  +  +
Sbjct: 1   MAL-EIVKYGHPALRHKSTPVTEINSELRKAIAEMFELMYAAKGIGLASNQVAIPRQFFI 59

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++L  D A +   +VFINP I+         +EGCLS P     VKR+  + +   D + 
Sbjct: 60  LNLTGDAAEKDEEVVFINPVILNRKSS-CEGEEGCLSFPGLYGPVKRAGEVLIEAFDLDG 118

Query: 120 QHQII----YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               +      D L    +QHE DHL+G+LFID ++   R     ++ +  Q
Sbjct: 119 NCFEMTLSAKEDDLAVRAVQHESDHLDGMLFIDRMTDRARKERQVEIDQFEQ 170


>gi|288817783|ref|YP_003432130.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|288787182|dbj|BAI68929.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|308751381|gb|ADO44864.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
          Length = 168

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 92/170 (54%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M +  ++ +PD  L+  S+ +          +++++  M S+ G +G+AA Q+ V  R++
Sbjct: 1   MRRLEILKYPDERLKIPSKEVSDFGKFFSEFLESLVFTMRSSPGCVGIAAPQVNVHKRVI 60

Query: 60  VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           V+D     H++N +     V +NP I+    +  + +EGCLS+PDY  +VKR  +I V  
Sbjct: 61  VVDTSISKHKENKLSHGLLVLVNPIILQREGEIVI-REGCLSVPDYTGNVKRHYWIKVSA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D          +G  A  +QHE+DHL+G +F++ L   K ++  +K+ +
Sbjct: 120 LDVKGNPVEFETEGFEAVVIQHEIDHLDGKVFLERLVSPK-ELFKRKVYR 168


>gi|239991763|ref|ZP_04712427.1| peptide deformylase [Streptomyces roseosporus NRRL 11379]
          Length = 206

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               + +  + +LRR  + +      ++  L+D+M        G GLAA QIGV  ++ V
Sbjct: 22  AVHRITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            D+ D    ++    +NP +     +        EGCLS+P     V R     VR  D 
Sbjct: 82  WDITDDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDM 141

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +    +I   G  A CLQHE DHL+G L++D L+R +R    ++M++
Sbjct: 142 DGAPLVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAE 188


>gi|124516653|gb|EAY58161.1| Polypeptide deformylase [Leptospirillum rubarum]
          Length = 177

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ + DP L   S  + +I+ ++ + +  M E++Y   GIG+AA Q+G   R  V D+  
Sbjct: 6   ILSYGDPRLLIKSTEVTRIDQEMSDFVRGMFELLYRVPGIGIAAPQVGCNMRFFVFDMNR 65

Query: 66  HA--HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            A    + P+  INP I          +EGCLS P     V+R+  I ++ +D   +  +
Sbjct: 66  RADPGSRTPVTMINPVISAKEGAI-TQEEGCLSFPGIFVPVERALRIEIKGVDMEGKDLV 124

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +  +GL A  +QHE+DHL G+L  +H++R  +  + K+M  + ++
Sbjct: 125 LEGEGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEMRAIEKI 169


>gi|227874915|ref|ZP_03993067.1| peptide deformylase [Mobiluncus mulieris ATCC 35243]
 gi|269976483|ref|ZP_06183468.1| peptide deformylase [Mobiluncus mulieris 28-1]
 gi|306818239|ref|ZP_07451969.1| peptide deformylase [Mobiluncus mulieris ATCC 35239]
 gi|307701754|ref|ZP_07638768.1| peptide deformylase [Mobiluncus mulieris FB024-16]
 gi|227844492|gb|EEJ54649.1| peptide deformylase [Mobiluncus mulieris ATCC 35243]
 gi|269935284|gb|EEZ91833.1| peptide deformylase [Mobiluncus mulieris 28-1]
 gi|304648978|gb|EFM46273.1| peptide deformylase [Mobiluncus mulieris ATCC 35239]
 gi|307613012|gb|EFN92267.1| peptide deformylase [Mobiluncus mulieris FB024-16]
          Length = 164

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 7/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + + +  DP+LR     I+   +  +  L++++LE +      GLAA QIGV  R  
Sbjct: 1   MAFREIRVVGDPVLRTPCEWIKDPRDPGVKQLVEDLLENVDQEGRAGLAANQIGVSLRAF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
             ++            +NPK++  S D++    EGCLS+P+     +R+ +  V  +D +
Sbjct: 61  SWNIDGEIGY-----VLNPKLVEVSQDEYQDGDEGCLSVPNLFYPTERAWYARVEGIDLD 115

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +  ++  + L+  CLQHE DHL GIL+ID L R  R    +++ K+
Sbjct: 116 GKPVVVEGEELMGRCLQHETDHLEGILYIDKLERKYRKAALQQVRKM 162


>gi|183601693|ref|ZP_02963063.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683774|ref|YP_002470157.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190808|ref|YP_002968202.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196214|ref|YP_002969769.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219299|gb|EDT89940.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621424|gb|ACL29581.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249200|gb|ACS46140.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250768|gb|ACS47707.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793797|gb|ADG33332.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 160

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR    PI +I   + NL+ ++L+ +      G++A QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP +     +     EGCLS+P      KR+ +  VR MD +  
Sbjct: 61  YNIDGKIGY-----VLNPVLEETRGE-QYGDEGCLSLPKLWYKTKRADYARVRGMDLDGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++  DG++   LQHE DHL+G L+ID L +
Sbjct: 115 EIVLEGDGIMGRMLQHETDHLDGHLYIDRLEK 146


>gi|71737618|ref|YP_273728.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558171|gb|AAZ37382.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320325402|gb|EFW81467.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 179

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   Q     A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|297572267|ref|YP_003698041.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932614|gb|ADH93422.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595]
          Length = 224

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+L + S  +   +  +  L  +M E   +  G+GLAA QIG+   + V 
Sbjct: 1   MLYPIHVYGSPVLHKTSAKVTVFDEKLATLAQDMFETCEAAPGVGLAAPQIGLDLAMFVW 60

Query: 62  DLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                 H+        NP + I P  +         +EGCLS P Y+  ++RS    +R 
Sbjct: 61  MYDGPEHKGPQRGVAVNPTLLIEPVDVFEPGP--ADEEGCLSFPGYQYGLRRSPRAVLRA 118

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            D   +   + A G  A  LQHE DHL G +++D L+      + K M +
Sbjct: 119 QDEKGEWYDLEATGWFARILQHEYDHLKGRIYVDRLTGKPAHQVEKVMKR 168


>gi|330880564|gb|EGH14713.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 169

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 10  PD-PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           PD P+LR+VS  ++K  N ++  L+D+M E M   +G+GLAA QIGV  R++VI+   + 
Sbjct: 8   PDAPLLRKVSAQVDKFSNGELRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIEFSGNE 67

Query: 68  HR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R        P V INP I +     +  +EGC S+P     V R A I     D +  +
Sbjct: 68  ERAPGESPVPPTVLINPVITS-GVGRTEGREGCFSVPGKIGIVPRYATIEYTAQDMDGLN 126

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL---KRDMITKK 161
               A+G  A  +QHE+DHLNGIL+ID  S +   +R+ I  K
Sbjct: 127 VRGKAEGFHARIIQHEVDHLNGILYIDIASEVSLYQREPIASK 169


>gi|237796060|ref|YP_002863612.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|229262415|gb|ACQ53448.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 178

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D +L+RVSR +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+   + + P++ INPK +         +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  IDLR---NGQEPIIIINPKFLKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|256958401|ref|ZP_05562572.1| formylmethionine deformylase [Enterococcus faecalis DS5]
 gi|256960470|ref|ZP_05564641.1| formylmethionine deformylase [Enterococcus faecalis Merz96]
 gi|256962963|ref|ZP_05567134.1| formylmethionine deformylase [Enterococcus faecalis HIP11704]
 gi|257080477|ref|ZP_05574838.1| formylmethionine deformylase [Enterococcus faecalis E1Sol]
 gi|257083202|ref|ZP_05577563.1| formylmethionine deformylase [Enterococcus faecalis Fly1]
 gi|257088235|ref|ZP_05582596.1| formylmethionine deformylase [Enterococcus faecalis D6]
 gi|257091366|ref|ZP_05585727.1| formylmethionine deformylase [Enterococcus faecalis CH188]
 gi|257417251|ref|ZP_05594245.1| formylmethionine deformylase [Enterococcus faecalis AR01/DG]
 gi|257417968|ref|ZP_05594962.1| formylmethionine deformylase [Enterococcus faecalis T11]
 gi|256948897|gb|EEU65529.1| formylmethionine deformylase [Enterococcus faecalis DS5]
 gi|256950966|gb|EEU67598.1| formylmethionine deformylase [Enterococcus faecalis Merz96]
 gi|256953459|gb|EEU70091.1| formylmethionine deformylase [Enterococcus faecalis HIP11704]
 gi|256988507|gb|EEU75809.1| formylmethionine deformylase [Enterococcus faecalis E1Sol]
 gi|256991232|gb|EEU78534.1| formylmethionine deformylase [Enterococcus faecalis Fly1]
 gi|256996265|gb|EEU83567.1| formylmethionine deformylase [Enterococcus faecalis D6]
 gi|257000178|gb|EEU86698.1| formylmethionine deformylase [Enterococcus faecalis CH188]
 gi|257159079|gb|EEU89039.1| formylmethionine deformylase [Enterococcus faecalis ARO1/DG]
 gi|257159796|gb|EEU89756.1| formylmethionine deformylase [Enterococcus faecalis T11]
          Length = 169

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 4/149 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 6   MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 65

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ + + R      INP II      S+  EGCLSIP+    V+R+  +TVRY D   + 
Sbjct: 66  EIDEESGRFE---LINPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHLNG LFID +
Sbjct: 122 MEVTAYGYLARAFQHEIDHLNGELFIDKM 150


>gi|219847779|ref|YP_002462212.1| peptide deformylase [Chloroflexus aggregans DSM 9485]
 gi|254767576|sp|B8G5R5|DEF_CHLAD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219542038|gb|ACL23776.1| peptide deformylase [Chloroflexus aggregans DSM 9485]
          Length = 188

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 16/180 (8%)

Query: 1   MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   D     IL+   RP++  + ++  L+ +M E M++ +G+GLAA QIG+  
Sbjct: 1   MAIRRILRIDDAEDRKILKMQCRPVKLPDRNLKQLVADMFETMHAANGVGLAAPQIGIPI 60

Query: 57  RLVVIDLQDHAHRK-----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           +L +I++      +            P V INP+I+  S +  +  EGCLS+P +   V 
Sbjct: 61  QLCIIEIPPEYEEQPDGSLIEVNPAEPYVLINPRIVKTSGEEIMRDEGCLSLPGWYGMVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           R  ++TV + D + +H  +   DGLL   +QHE+DHL+GILF + +  L       K  +
Sbjct: 121 RQTWVTVEFQDLSGKHHRLRRADGLLGWAIQHEVDHLHGILFTERIRDLSTLRDITKERE 180


>gi|298346549|ref|YP_003719236.1| peptide deformylase [Mobiluncus curtisii ATCC 43063]
 gi|304389733|ref|ZP_07371692.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315655106|ref|ZP_07908008.1| peptide deformylase [Mobiluncus curtisii ATCC 51333]
 gi|315657036|ref|ZP_07909921.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|298236610|gb|ADI67742.1| peptide deformylase [Mobiluncus curtisii ATCC 43063]
 gi|304326909|gb|EFL94148.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315490587|gb|EFU80210.1| peptide deformylase [Mobiluncus curtisii ATCC 51333]
 gi|315492428|gb|EFU82034.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 164

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 7/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + + +  DP+LR     I    +  +  L++++LE +      GLAA QIGV  R  
Sbjct: 1   MAFREIRVVGDPVLRTPCDWITDPRDPGVKQLVEDLLENVDEDGRAGLAANQIGVSLRAF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFS-DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
             ++            +NPK++  S D++    EGCLS+P      KR+ +  V  +D +
Sbjct: 61  SWNIDGEIGY-----VLNPKLVAMSEDEYQDGDEGCLSVPGLFYPTKRAWYARVEGIDLD 115

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +  ++  + L+  CLQHE DHL G L++D L R  R    +++ K+
Sbjct: 116 GKPLVVEGEELMGRCLQHECDHLEGHLYLDKLERKYRKEALQQIRKM 162


>gi|332709095|ref|ZP_08429064.1| peptide deformylase [Lyngbya majuscula 3L]
 gi|332352146|gb|EGJ31717.1| peptide deformylase [Lyngbya majuscula 3L]
          Length = 178

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 6   LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           +    +PILR+ S+ +  + +  +  LID ++    + +G+G+AA Q+   YRL ++  +
Sbjct: 8   IAQLGNPILRQHSQGVHNLLDERLQQLIDQLIATATAANGVGIAAPQVSQSYRLFIVASR 67

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    +     P   INP +I+   D     EGCLSIP  R  V R + I V Y +   
Sbjct: 68  PNLRYPHAPLMEPTAMINPSMISHDTDMVKDWEGCLSIPGIRGLVPRYSRIEVEYTNRYG 127

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Q+Q       +A   QHE DHL GI+F+D +   +  M  ++  K +
Sbjct: 128 QYQRQQLTDFVARIFQHEYDHLEGIVFLDRVESTQEMMTEEEYQKQI 174


>gi|291613763|ref|YP_003523920.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
 gi|291583875|gb|ADE11533.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
          Length = 177

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   D  L R +  +   +  ++  L+ +M E M + DG+GLAA QIGV  R+V
Sbjct: 1   MATREVLRMGDVRLLRKAGEVRLFDTPELHALLKDMRETMLAMDGVGLAAPQIGVDLRVV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           + ++        A      V INP +   SD      EGCLS+P  R  V R   +  + 
Sbjct: 61  IFEVNQNPRYPDAETVPQTVLINPVLTPLSDVMEEGWEGCLSVPGMRGLVPRYTHLRYQG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            D           G  A  +QHE DHL+GIL+   +  +K
Sbjct: 121 RDEYGALIDRTVSGFHARVVQHECDHLDGILYPMRIRDMK 160


>gi|255994858|ref|ZP_05427993.1| peptide deformylase [Eubacterium saphenum ATCC 49989]
 gi|255993571|gb|EEU03660.1| peptide deformylase [Eubacterium saphenum ATCC 49989]
          Length = 154

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ +RP+ ++   I  L+ +M E M+   G+G+AA Q+G+L R+ +
Sbjct: 1   MALRQVRKKGDELLRKKARPVGEVTDRIKLLLQDMEETMHKEGGVGIAAPQVGILKRMFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++      + +P   I+P+II  S +    +EGCLS+P     V R   I V+Y   + +
Sbjct: 61  ME----PVQGSPEYVIDPEIIKASGE-QECEEGCLSVPGVVGTVIRPEKIEVKYTGLDGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +        A    HE DHL G+LFID  S +++
Sbjct: 116 ERRRLLTEFEAIVFSHEFDHLEGVLFIDKASNIRK 150


>gi|251772750|gb|EES53312.1| peptide deformylase [Leptospirillum ferrodiazotrophum]
          Length = 184

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 8/161 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +    +P+LR++S P+ K      +    +D+M+E M   DG+GLAA Q+ V  +
Sbjct: 1   MALLKIAKMGNPVLRKISEPVSKEEIARPEFQRFLDDMIETMKDEDGLGLAAPQVHVSKQ 60

Query: 58  LVVID-LQDHAHRKNP----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +V+I+ L D      P    +V INP     S +     EGCLS+ + R  V RS  + +
Sbjct: 61  VVIIESLDDPRSEDGPPTPLLVLINPVFKYMSKETRTGWEGCLSLDNLRGKVTRSRAVKL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +    +  ++  +   A  LQHE+DHL G LF+D +  +
Sbjct: 121 EALGRKGETIVLDWEEFPAVVLQHEIDHLRGHLFVDRMKDM 161


>gi|329114617|ref|ZP_08243376.1| Peptide deformylase 1 [Acetobacter pomorum DM001]
 gi|326696097|gb|EGE47779.1| Peptide deformylase 1 [Acetobacter pomorum DM001]
          Length = 174

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+LR+ ++ + +    DI  LI +M E +  + G+GLAA Q+ V  RL 
Sbjct: 1   MAVLAIARMGHPVLRQSAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLF 60

Query: 60  VIDLQ--DHAHRKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +  +         +P +     INP +    D+  +  EGCLS+PD R +V R   I   
Sbjct: 61  IYSVPLARSEGEDDPPLPVQALINPILTPVDDETQLRAEGCLSLPDLRGEVPRYKRIWYA 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             D + Q     A G  A  +QHE+DHL+GIL+   ++ + +    K++++
Sbjct: 121 GFDQHGQKVEGMATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKEITR 171


>gi|88855570|ref|ZP_01130234.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
 gi|88815477|gb|EAR25335.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
          Length = 163

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR V  PI   +     LI +++E +      GLAA QIGV  R   
Sbjct: 1   MAVREIRLFGDPVLRSVCDPITVGDPHAAALIADLIESVQIPGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            INP +   S D  +  EGCLS+P +     R  F  V  +D + Q
Sbjct: 61  YNIDGEVGY-----IINPVLAEVSGDPELVDEGCLSVPGFYFLRSRYPFARVTGVDLDGQ 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +GL+A  LQHE DHL+G L+I+ L    +    + + K
Sbjct: 116 PVELSGEGLMAQALQHETDHLDGHLYIEGLDSETKREAMRAIRK 159


>gi|152966929|ref|YP_001362713.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
 gi|151361446|gb|ABS04449.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
          Length = 181

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M +  G GLAA Q+GV  R+  
Sbjct: 1   MAIQPIRLFGDPVLRQRADEVTTFDKELRQLVKDLEDTMLAAPGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          +NP +   S++     EGCLS P   AD +RS  +  +  D + +
Sbjct: 61  YHADDEIG-----HLVNPVLD-LSEECQEGDEGCLSFPGIVADTRRSLHVVAKGFDMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I      A  +QHE DHL+G+LFID L + +R +  K + +   L
Sbjct: 115 PITITGSEFKARAIQHETDHLDGVLFIDRLDKAQRKLALKAVREAEWL 162


>gi|227554544|ref|ZP_03984591.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|257078288|ref|ZP_05572649.1| formylmethionine deformylase [Enterococcus faecalis JH1]
 gi|293385128|ref|ZP_06630954.1| peptide deformylase [Enterococcus faecalis R712]
 gi|293389101|ref|ZP_06633573.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294779979|ref|ZP_06745359.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|307273623|ref|ZP_07554851.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|307288889|ref|ZP_07568862.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|307292141|ref|ZP_07572007.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|312910850|ref|ZP_07769686.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|227176342|gb|EEI57314.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|256986318|gb|EEU73620.1| formylmethionine deformylase [Enterococcus faecalis JH1]
 gi|291077605|gb|EFE14969.1| peptide deformylase [Enterococcus faecalis R712]
 gi|291081569|gb|EFE18532.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294452960|gb|EFG21382.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|306496794|gb|EFM66345.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|306500161|gb|EFM69505.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|306509636|gb|EFM78678.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|311288873|gb|EFQ67429.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|315034825|gb|EFT46757.1| peptide deformylase [Enterococcus faecalis TX0027]
 gi|315150901|gb|EFT94917.1| peptide deformylase [Enterococcus faecalis TX0012]
 gi|315164416|gb|EFU08433.1| peptide deformylase [Enterococcus faecalis TX1302]
 gi|315167224|gb|EFU11241.1| peptide deformylase [Enterococcus faecalis TX1341]
 gi|315172963|gb|EFU16980.1| peptide deformylase [Enterococcus faecalis TX1346]
 gi|315573272|gb|EFU85463.1| peptide deformylase [Enterococcus faecalis TX0309B]
 gi|327536241|gb|AEA95075.1| formylmethionine deformylase [Enterococcus faecalis OG1RF]
          Length = 164

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 4/149 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 1   MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ + + R      INP II      S+  EGCLSIP+    V+R+  +TVRY D   + 
Sbjct: 61  EIDEESGRFE---LINPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHLNG LFID +
Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145


>gi|268680776|ref|YP_003305207.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618807|gb|ACZ13172.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946]
          Length = 171

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 4/155 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++++P+ ILR  SR +   ++ +  L+D+M E M + +GIGLAA+QIGV    ++I
Sbjct: 1   MIREILVYPNKILRETSRDVIHFDATLHELLDDMYETMITKEGIGLAAIQIGVAQNALII 60

Query: 62  DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L D      ++N    INP I+       VYQEGCLS+P Y  +V R+  I +R+ D  
Sbjct: 61  NLVDETGLQKKENLYEIINPVILEKDGST-VYQEGCLSVPGYYDEVTRAEHIKLRFYDRM 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                     L+A  +QHE+DHL G LFI+ LS L
Sbjct: 120 GVMHEEEFRDLMAIAVQHEMDHLKGHLFIEKLSYL 154


>gi|182701890|ref|ZP_02617367.2| peptide deformylase [Clostridium botulinum Bf]
 gi|182674086|gb|EDT86047.1| peptide deformylase [Clostridium botulinum Bf]
          Length = 178

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D +L+RVSR +E I+ +I  +I ++ + +Y+  GIGLAA QIG L R+ +
Sbjct: 23  MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+   + + P++ INPK +         +EGCLS P Y   V R   + +  ++   +
Sbjct: 83  IDLR---NGQEPIIIINPKFLKKIG-KEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A GLL     HE DHL+GI++ID   ++ +
Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173


>gi|119485654|ref|ZP_01619929.1| polypeptide deformylase [Lyngbya sp. PCC 8106]
 gi|119456979|gb|EAW38106.1| polypeptide deformylase [Lyngbya sp. PCC 8106]
          Length = 175

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 7/172 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M     +    +P+LRR ++PI  I + D+  LIDN++  +  T+G+G+AA Q+    RL
Sbjct: 1   MTEILQVAQLGNPVLRRHAQPITDIADQDLQTLIDNLIATVLKTNGVGIAAPQVSRSDRL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +          P   INPKI+  S +     EGCLSIP  R  V R   I V 
Sbjct: 61  LIVASRPNRRYPQAPLMAPTAMINPKIVNHSTEQEKGWEGCLSIPGVRGLVPRYQTIQVE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           Y D + Q Q       +A   QHE DHL GI+F+D ++  +  +   +   L
Sbjct: 121 YTDRSGQLQRQQLTDFVARIFQHEYDHLEGIVFLDRVNDEQDVITEAEYQAL 172


>gi|218249152|ref|YP_002374523.1| peptide deformylase [Cyanothece sp. PCC 8801]
 gi|218169630|gb|ACK68367.1| peptide deformylase [Cyanothece sp. PCC 8801]
          Length = 178

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 6   LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           +    +PILR+ ++ I +I + ++  LID ++       G+G+AA Q+    RL ++   
Sbjct: 7   IAELGNPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILASH 66

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    N     P+  INP+I++ S +     EGCLS+P  R  V R  ++ V Y D   
Sbjct: 67  PNPRYPNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDRFG 126

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Q Q       +A   QHELDHLNG++F+D + 
Sbjct: 127 QFQQQKLTDFVARIFQHELDHLNGLIFLDRVK 158


>gi|225549344|ref|ZP_03770317.1| peptide deformylase [Borrelia burgdorferi 94a]
 gi|225370202|gb|EEG99642.1| peptide deformylase [Borrelia burgdorferi 94a]
          Length = 165

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/161 (38%), Positives = 93/161 (57%), Gaps = 4/161 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P+VFINP II  S +FS Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 62  KMAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
                LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|297617045|ref|YP_003702204.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144882|gb|ADI01639.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680]
          Length = 153

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 6/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ PDP+LR  + P+   N  ++ L++NM + +Y  +G+GLAA QIGVL R+VV
Sbjct: 1   MAAYQIVVVPDPVLREKALPVTSFNQGLIRLLENMKDSLYEAEGVGLAAPQIGVLRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D       +  INP+I+   +      EGCLSIP+ R  VKR+  + V  ++   +
Sbjct: 61  FDAGD-----GLVELINPRILEE-EGEEAGIEGCLSIPNTRGLVKRAKRVVVEALNRYGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  I  +GL+A  +QHE+DHL+GILF D   
Sbjct: 115 NIRIEGEGLVARVIQHEIDHLDGILFTDRAE 145


>gi|114566758|ref|YP_753912.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318216|sp|Q0AXL3|DEF_SYNWW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114337693|gb|ABI68541.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 152

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 13/165 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  P+ ILR  + P+++IN+ ++ ++DNM + MY+ DG+GLAA QIG+  R++V
Sbjct: 1   MSVYQVITVPNDILRGKALPVKEINAGVLRVLDNMRDTMYAADGVGLAAPQIGIPKRMIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +     N +  INP+I+    +  +  EGCLS+P     V R+  + V+ +D N Q
Sbjct: 61  VDIGE-----NLLELINPEILKQEGN-QLGSEGCLSVPGIVGRVNRAKKVLVKGLDRNGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                A  LLA  LQHE+DHL GILFID         I  ++ KL
Sbjct: 115 ELNFAAVDLLAKVLQHEIDHLEGILFIDKA-------IETRIEKL 152


>gi|283456090|ref|YP_003360654.1| peptide deformylase [Bifidobacterium dentium Bd1]
 gi|283102724|gb|ADB09830.1| def Peptide deformylase [Bifidobacterium dentium Bd1]
          Length = 153

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            PDP+LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R    ++     
Sbjct: 1   MPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNIDGKIG 60

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                  +NP +   S +     EGCLS+P      +R+ +  VR +D +    ++   G
Sbjct: 61  Y-----VLNPVLEETSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHG 114

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           ++   LQHE DHL+G +++D L + +R    + M    Q
Sbjct: 115 IMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRNHRQ 153


>gi|315604653|ref|ZP_07879716.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313665|gb|EFU61719.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 210

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 32/184 (17%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I   P+L R++ P+E  +S++ +L+ +M++ M++  G+GLAA Q+GV  ++ V
Sbjct: 1   MSILPICITGTPVLHRLAAPVESFDSELRDLVTDMIDTMHAAPGVGLAAPQVGVGSQVFV 60

Query: 61  IDLQDHA----HRKNPM----------------VFINP------------KIITFSDDFS 88
                      H ++ +                V +NP             I+    D +
Sbjct: 61  WRYAGGGAFDTHYRDVLQLDEGPARGFNTVTSGVVVNPTLDLVWDTHGAGAILPAEPDIA 120

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
              EGCLS+P Y   ++R+    +R  D       + A G LA   QHE DHL G L++D
Sbjct: 121 HESEGCLSVPGYGYPLRRALGAVLRGYDTRGNAIEVSARGWLARIFQHEYDHLQGTLYVD 180

Query: 149 HLSR 152
            L  
Sbjct: 181 RLDE 184


>gi|255553123|ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus communis]
 gi|223543236|gb|EEF44768.1| polypeptide deformylase, putative [Ricinus communis]
          Length = 266

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 17/169 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +V   DP+L   +R ++     +  I  +ID+M++VM    G+GLAA QIGV  R
Sbjct: 75  MSLPDIVKAGDPVLHEPAREVDPDEIGSERIQKIIDDMVKVMRRAPGVGLAAPQIGVPLR 134

Query: 58  LVV-------IDLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           ++V       I        K       + +V +NPK+    +  +++ EGCLS+  +RA 
Sbjct: 135 IIVLEDTTEYIGYAPKEETKAQDRRPFDLLVILNPKLKKKGNRTALFFEGCLSVDGFRAV 194

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+RS  + V  +D + Q   + A G  A  LQHE DHL+G L++D +  
Sbjct: 195 VERSLEVEVSGLDRSGQPIKVDASGWQARILQHECDHLDGTLYVDKMVP 243


>gi|221217366|ref|ZP_03588837.1| peptide deformylase [Borrelia burgdorferi 72a]
 gi|224533957|ref|ZP_03674542.1| peptide deformylase [Borrelia burgdorferi CA-11.2a]
 gi|225549696|ref|ZP_03770661.1| peptide deformylase [Borrelia burgdorferi 118a]
 gi|221192644|gb|EEE18860.1| peptide deformylase [Borrelia burgdorferi 72a]
 gi|224512960|gb|EEF83326.1| peptide deformylase [Borrelia burgdorferi CA-11.2a]
 gi|225369656|gb|EEG99104.1| peptide deformylase [Borrelia burgdorferi 118a]
          Length = 165

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 3/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P+VFINP II  S +FS Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 62  KMAR---PLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                LA  +QHE+DHLNG+LFID+     ++ + K   +   LR
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRERGLR 163


>gi|325923638|ref|ZP_08185267.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
 gi|325545882|gb|EGD17107.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
          Length = 171

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M    G+GLAA QI V  +L+V
Sbjct: 1   MIREIIRMGDKRLLRVAPPVTNLGSAELRTLVADMFETMDDARGVGLAAPQIAVDLQLMV 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +       A         N +I   S++     EGCLSIP  RA + R  FI  R  
Sbjct: 61  FGFEASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             +       A+G  A  +QHE DHL G L+   +         
Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164


>gi|224534861|ref|ZP_03675430.1| peptide deformylase [Borrelia spielmanii A14S]
 gi|224513801|gb|EEF84126.1| peptide deformylase [Borrelia spielmanii A14S]
          Length = 165

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 7/160 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISSGVGLAAPQVGLDLSLFVVREN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P+VFINP I   S + + Y+EGCLSIP    D+ R   I V + D N +   I
Sbjct: 62  KMAK---PLVFINPLITETSYELNSYKEGCLSIPGVYYDLMRPKTIVVNFYDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                LA  +QHE+DHLNG+LFID+      + I KK+ K
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYE----ERIKKKLLK 154


>gi|195941804|ref|ZP_03087186.1| polypeptide deformylase (def) [Borrelia burgdorferi 80a]
 gi|223889134|ref|ZP_03623723.1| peptide deformylase [Borrelia burgdorferi 64b]
 gi|224533042|ref|ZP_03673648.1| peptide deformylase [Borrelia burgdorferi WI91-23]
 gi|226320763|ref|ZP_03796319.1| peptide deformylase [Borrelia burgdorferi 29805]
 gi|226322023|ref|ZP_03797548.1| peptide deformylase [Borrelia burgdorferi Bol26]
 gi|223885383|gb|EEF56484.1| peptide deformylase [Borrelia burgdorferi 64b]
 gi|224512036|gb|EEF82431.1| peptide deformylase [Borrelia burgdorferi WI91-23]
 gi|226232613|gb|EEH31367.1| peptide deformylase [Borrelia burgdorferi Bol26]
 gi|226233818|gb|EEH32543.1| peptide deformylase [Borrelia burgdorferi 29805]
          Length = 165

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P+VFINP II  S + S Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 62  KMAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
                LA  +QHE+DHLNG+LFID+   +LK  ++   M +
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159


>gi|312148406|gb|ADQ31065.1| peptide deformylase [Borrelia burgdorferi JD1]
 gi|312149552|gb|ADQ29623.1| peptide deformylase [Borrelia burgdorferi N40]
          Length = 165

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 3/165 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ IE I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVREN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P+VFINP II  S + S Y+EGCLSIP    D+ R   + + + D N +   I
Sbjct: 62  KMAR---PLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                LA  +QHE+DHLNG+LFID+     ++ + K   +   LR
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRERGLR 163


>gi|210633316|ref|ZP_03297750.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279]
 gi|210159178|gb|EEA90149.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279]
          Length = 178

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ PDP LR+    +E+IN +++ L++ M + M+   G GLAA Q+G   +L +
Sbjct: 1   MEVNGIVLSPDPRLRQECAEVEEINGELIELVERMKDQMFENGGCGLAAPQVGQTIQLAI 60

Query: 61  IDLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ID +  + +  +P V INP I+  SD+     EGCLSIP    ++ R   + V   + + 
Sbjct: 61  IDTEYSSKKDYDPYVLINPVIVEQSDNLVPSSEGCLSIPGINCEILRPDHVVVEAYNLDG 120

Query: 120 QHQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                 A G L   CLQHE+DHL+G    D L+  +R    K+  + +
Sbjct: 121 DCIRYEAAGDLFCVCLQHEIDHLHGKTMFDRLTPQQRVHAMKQYQEAL 168


>gi|297844442|ref|XP_002890102.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335944|gb|EFH66361.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 270

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +R ++     +  I  +ID+M++VM    G+GLAA QIGV  R++V+
Sbjct: 83  EIVAAGDPVLHEKAREVDPEEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 142

Query: 62  D--------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +              L       + MV +NP +   S+  +++ EGCLS+  +RA V+R 
Sbjct: 143 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVNGFRAAVERY 202

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V   D   +   + A G  A  LQHE DHL+G L++D +  
Sbjct: 203 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 247


>gi|330468108|ref|YP_004405851.1| peptide deformylase [Verrucosispora maris AB-18-032]
 gi|328811079|gb|AEB45251.1| peptide deformylase [Verrucosispora maris AB-18-032]
          Length = 165

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 7/162 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVID 62
           + + I  DP+LR  S PI   ++++ +L+ ++++ +    G  G+AA QIGV  ++ V D
Sbjct: 2   RDIRIIGDPVLRTPSEPITSFDAELRSLVTDLMDTLLGKPGRAGVAAPQIGVNAQVFVYD 61

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
              H         INP +   SD+     EGCLSIP       R+   T    D + +  
Sbjct: 62  ADGHRG-----HMINPTLD-LSDELQDDDEGCLSIPGLYFPTPRALHATAHGFDQHGEPL 115

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            I   G LA  LQHE DHL+G L++D L    R    +++  
Sbjct: 116 TIAGSGFLARALQHETDHLHGRLYVDTLRGDIRRRALREIRA 157


>gi|111019610|ref|YP_702582.1| peptide deformylase [Rhodococcus jostii RHA1]
 gi|110819140|gb|ABG94424.1| peptide deformylase [Rhodococcus jostii RHA1]
          Length = 188

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 11/170 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I  D  L   +  +   +S++   +D++ E   +  G GLAA Q+G    + V
Sbjct: 1   MAIRPILIAGDTRLTTPAVTVTAFDSELAAFVDDLHETNTAAHGAGLAANQVGDPRAIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115
            DL D A R++    INP +   S            EGCLS+P  R    R+ +  V  +
Sbjct: 61  YDLIDDA-RRHRGHVINPVL-ETSPRPETMPDPDDLEGCLSVPGERYPTGRADWARVVGV 118

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMITKK 161
           D + +   +   G LA CLQHE DHL G L++D L     R  R MI ++
Sbjct: 119 DVDNKPISVEGTGYLARCLQHETDHLAGHLYLDRLIGRNHRAARKMIKQR 168


>gi|289663684|ref|ZP_06485265.1| peptide deformylase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 171

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIRDIIRMGDKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S +     EGCLSIP  RA + R  +I  R +
Sbjct: 61  FGFDASERYPEAPAVPRTALANAQIEPLSGEMENGWEGCLSIPGLRAVIPRYRYIRYRGV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             +       A+G  A  +QHE DHL G L+   +         
Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164


>gi|312962671|ref|ZP_07777160.1| peptide deformylase [Pseudomonas fluorescens WH6]
 gi|311283046|gb|EFQ61638.1| peptide deformylase [Pseudomonas fluorescens WH6]
          Length = 179

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+  E  +  ++  LID+M + M    G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + INP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFEASERYPDAPPVPQTILINPLITPLSPVLEEGYEGCLSVPGLRGAVNRYQQIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
             D   +  + +ADG  A  +QHE DHL G L+   ++   +   
Sbjct: 121 GFDPKGEPIVRFADGFHARVVQHECDHLIGRLYPSRITDFSKFGF 165


>gi|255970684|ref|ZP_05421270.1| formylmethionine deformylase [Enterococcus faecalis T1]
 gi|256618121|ref|ZP_05474967.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200]
 gi|256761051|ref|ZP_05501631.1| formylmethionine deformylase [Enterococcus faecalis T3]
 gi|256854795|ref|ZP_05560159.1| formylmethionine deformylase [Enterococcus faecalis T8]
 gi|257420429|ref|ZP_05597419.1| formylmethionine deformylase [Enterococcus faecalis X98]
 gi|255961702|gb|EET94178.1| formylmethionine deformylase [Enterococcus faecalis T1]
 gi|256597648|gb|EEU16824.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200]
 gi|256682302|gb|EEU21997.1| formylmethionine deformylase [Enterococcus faecalis T3]
 gi|256710355|gb|EEU25399.1| formylmethionine deformylase [Enterococcus faecalis T8]
 gi|257162253|gb|EEU92213.1| formylmethionine deformylase [Enterococcus faecalis X98]
          Length = 169

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 4/149 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 6   MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 65

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ + +        INP II      S+  EGCLSIP+    V+R+  +TVRY D   + 
Sbjct: 66  EIDEESGHFE---LINPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHLNG LFID +
Sbjct: 122 MEVTAYGYLARAFQHEIDHLNGELFIDKM 150


>gi|302384945|ref|YP_003820767.1| peptide deformylase [Clostridium saccharolyticum WM1]
 gi|302195573|gb|ADL03144.1| peptide deformylase [Clostridium saccharolyticum WM1]
          Length = 151

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/149 (38%), Positives = 84/149 (56%), Gaps = 7/149 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M  + +  F D  LR  S+P+E++N  I  ++D+M E +++T  G  LAA Q+G+L RLV
Sbjct: 1   MALREIRTFDDNELRLKSKPVEQVNDRIRMILDDMAETLHNTPNGGALAANQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D   +      INP I+  S+      E CLS P     V+R   + V+ +D N 
Sbjct: 61  VIDLGDGVRK-----LINPVILW-SEGEQFEPEACLSFPGLWGKVRRPKSVVVKALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148
             + I A   +A CL HE+DHL+GI+F D
Sbjct: 115 CERKIKASDFMAKCLCHEIDHLDGIVFTD 143


>gi|154509286|ref|ZP_02044928.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798920|gb|EDN81340.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC
           17982]
          Length = 212

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 32/182 (17%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L RV+ P++ I+S++ +L+ +M+E M++  G+GLAA Q+GV  ++ V
Sbjct: 1   MSILPICITGEPVLHRVADPVDSIDSELRDLVADMIETMHAAPGVGLAAPQVGVGAQVFV 60

Query: 61  IDLQDHAH-----------RKNP---------MVFINP------------KIITFSDDFS 88
                               + P          V +NP             I+    D +
Sbjct: 61  WRYGGAGSFDAQYREVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIA 120

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           +  EGCLS+P Y   ++R     +R  D +     + A G LA   QHE DHL G L++D
Sbjct: 121 LESEGCLSVPGYGYPLRRVLGAVLRGYDVDGNAIEVSARGWLARIFQHEYDHLQGTLYVD 180

Query: 149 HL 150
            L
Sbjct: 181 RL 182


>gi|325918418|ref|ZP_08180546.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325535380|gb|EGD07248.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 176

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M    G+GLAA QI V  +L+V
Sbjct: 6   MIREIIRMGDKRLLRVAPPVTNLGSAELQALVADMFETMDDARGVGLAAPQIAVDLQLMV 65

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +       A         N +I   SD+     EGCLSIP  RA + R   I  R  
Sbjct: 66  FGFEVSERYPDAPTVPRTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRHIRYRGF 125

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             +       A+G  A  +QHE DHL G L+   +         
Sbjct: 126 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 169


>gi|240168904|ref|ZP_04747563.1| peptide deformylase [Mycobacterium kansasii ATCC 12478]
          Length = 197

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   ++PI          D+  LI +M + M +  G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTPTKPIPVGADGSLPADLPQLITDMYDTMDAAYGVGLAANQIGHG 60

Query: 56  YRLVVIDLQDHAHR--KNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            R+ V D  +   +  +   V INP     +I     D    +EGCLS+P       R+ 
Sbjct: 61  LRVFVYDCAEDRGKTARRRGVVINPVLETSEIPETMPDPDNDEEGCLSVPGESFPTGRAK 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +  +     I   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLGADGAPVDIEGTGLFARMLQHETGHLDGFLYLDCL 162


>gi|300861509|ref|ZP_07107593.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|312953219|ref|ZP_07772065.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|295114433|emb|CBL33070.1| peptide deformylase [Enterococcus sp. 7L76]
 gi|300848970|gb|EFK76723.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|310628836|gb|EFQ12119.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|315031809|gb|EFT43741.1| peptide deformylase [Enterococcus faecalis TX0017]
 gi|315152788|gb|EFT96804.1| peptide deformylase [Enterococcus faecalis TX0031]
 gi|315154709|gb|EFT98725.1| peptide deformylase [Enterococcus faecalis TX0043]
 gi|323479052|gb|ADX78491.1| peptide deformylase [Enterococcus faecalis 62]
          Length = 164

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 4/149 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 1   MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ + +        INP II      S+  EGCLSIP+    V+R+  +TVRY D   + 
Sbjct: 61  EIDEESGHFE---LINPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA   QHE+DHLNG LFID +
Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145


>gi|206895565|ref|YP_002246726.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265]
 gi|206738182|gb|ACI17260.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265]
          Length = 171

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 7/157 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVID 62
            + + PD +LR  ++ ++    +   ++++M  +M   +  G+GLAA Q+G+  R VVID
Sbjct: 2   DIRVIPDKMLRAKAQKVKSFTEEDRRIVEDMFRLMKENEVEGVGLAAPQVGISKRFVVID 61

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           L +        V INP+      +     EGCLS+P     V+R   I V + +   +  
Sbjct: 62  LDEFHE-----VLINPRWEPLGKEKEEDIEGCLSVPGVYGPVERFKKIKVSFTNLYGEKI 116

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            +  DG+L+  +QHE+DHL+G+LFID ++   R  + 
Sbjct: 117 TLKLDGMLSRVVQHEVDHLDGVLFIDKITDWDRIEVM 153


>gi|168704063|ref|ZP_02736340.1| peptide deformylase [Gemmata obscuriglobus UQM 2246]
          Length = 184

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V +P P LR  ++P+  I++D+      M+E+MY ++G+GLAA Q+ + Y+++V++ L 
Sbjct: 3   IVRYPHPALRAKAKPVIAIDADVQKAAAQMVELMYRSEGLGLAAPQVTLDYQMIVLNPLG 62

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +       +V INP I+         +EGCLS P    +V+R   +TV++ +   +    
Sbjct: 63  EADQPDQEVVAINPVIVEAKGSTINDREGCLSFPGLYQNVRRYKTVTVKFYNLKGELVQT 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            A  L A   QHE+DHL G LFID +  L      K + K +
Sbjct: 123 TAHDLAARVWQHEIDHLQGTLFIDKMGSLGLSRSQKDLEKFI 164


>gi|83951627|ref|ZP_00960359.1| peptide deformylase [Roseovarius nubinhibens ISM]
 gi|83836633|gb|EAP75930.1| peptide deformylase [Roseovarius nubinhibens ISM]
          Length = 165

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 2/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P + +PD  LR  +  +  I  +   L D M+ VM +  G+GLAAVQ+G ++RL V+
Sbjct: 1   MPRPCIPWPDKRLRTPAEDVAAITDETCALWDEMIAVMEAMPGVGLAAVQLGEMHRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D    + R   +   NP+++  S     ++E   ++P   A + R   +TVR+++   + 
Sbjct: 61  DAS--SERGQAVRMANPEVLHASAQLREHEEASPNLPGVSAKISRPRAVTVRFLNQEGEI 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +     GL AT +QH++DHL G ++ D LS++KRDM+ ++  KL
Sbjct: 119 EERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARKL 162


>gi|119713702|gb|ABL97752.1| peptide deformylase [uncultured marine bacterium EB0_41B09]
          Length = 163

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 9   FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64
             +PIL + +  +EK +  +I  LI +M++ M    G GLAA Q+G   +LV+  +    
Sbjct: 1   MGNPILLKEAEKVEKFDTPEIHELIKDMIKTMKDAQGAGLAAPQVGESIQLVIFGVDKNE 60

Query: 65  --DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
               A      V INP I   + +     EGCLS+P  R  V R   I  +  D      
Sbjct: 61  RYPEAEEVPFTVLINPVITPLNQEKEDDWEGCLSVPGMRGVVPRYKTINYKGFDQYGNEI 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
               +G  A  +QHE DHL GIL+   +  +K
Sbjct: 121 DRDVEGFHARVVQHECDHLFGILYPSRIEDMK 152


>gi|300866152|ref|ZP_07110873.1| peptide deformylase [Oscillatoria sp. PCC 6506]
 gi|300335864|emb|CBN56033.1| peptide deformylase [Oscillatoria sp. PCC 6506]
          Length = 177

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 7/173 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M     +    +P+LRR ++ IE + +  +  LIDN++    + +G+G+AA Q+   YRL
Sbjct: 1   MAEILQISQLGNPVLRRQAQTIENLEDEQLQKLIDNLIHTAQNANGVGIAAPQVAQSYRL 60

Query: 59  VVIDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  +       A    P   INP+II  S+D     EGCLSIP  R  V R   I + 
Sbjct: 61  LIVASRPSTRYPQAPTMEPTAMINPQIIARSNDVVKDWEGCLSIPGIRGLVPRYQAIEIE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Y   + +         +A   QHE DHL+G++F+D +   +  M  ++  + +
Sbjct: 121 YTARDGKLHRQELRDFVARIFQHEYDHLDGLVFLDRVENAQELMAEEEYQEQI 173


>gi|17433051|sp|Q9FV53|DEF1A_ARATH RecName: Full=Peptide deformylase 1A, chloroplastic; Short=AtDEF1;
           Short=AtPDF1A; Short=PDF 1A; AltName: Full=Polypeptide
           deformylase; Flags: Precursor
 gi|5103837|gb|AAD39667.1|AC007591_32 Simalar to gi|4377403 Polypeptide Deformylase from Chlamydia
           pneumoniae genome gb|AE001687 [Arabidopsis thaliana]
 gi|13605760|gb|AAK32873.1|AF361861_1 At1g15390/F9L1_34 [Arabidopsis thaliana]
 gi|22136570|gb|AAM91071.1| At1g15390/F9L1_34 [Arabidopsis thaliana]
          Length = 259

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +R ++  +I S+ I  +ID+M++VM    G+GLAA QIGV  R++V+
Sbjct: 72  EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 131

Query: 62  D--------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +              L       + MV +NP +   S+  +++ EGCLS+  +RA V+R 
Sbjct: 132 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 191

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V   D   +   + A G  A  LQHE DHL+G L++D +  
Sbjct: 192 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 236


>gi|163848638|ref|YP_001636682.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl]
 gi|222526574|ref|YP_002571045.1| peptide deformylase [Chloroflexus sp. Y-400-fl]
 gi|254767575|sp|A9WHG7|DEF_CHLAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767577|sp|B9LBS4|DEF_CHLSY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|163669927|gb|ABY36293.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl]
 gi|222450453|gb|ACM54719.1| peptide deformylase [Chloroflexus sp. Y-400-fl]
          Length = 188

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 22/186 (11%)

Query: 1   MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   D     IL+   RP++  + ++  L+ +M E M +  G+GLAA QIG+  
Sbjct: 1   MAIRRILRIDDAEDRKILKMQCRPVKLPDRNLKQLVADMFETMRAAHGVGLAAPQIGIPI 60

Query: 57  RLVVIDLQDHAHRK-----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           +L +I++      +            P V INP+I+  S +  +  EGCLS+P +   V 
Sbjct: 61  QLCIIEIPAEYEERADGSVVEVAPAEPYVLINPRIVKMSGEEVMRDEGCLSLPGWYGMVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           R  ++TV + D N +H  +   G LL   +QHE+DHLNGILF + +  L        +  
Sbjct: 121 RQTWVTVEFQDLNGKHHRLRRAGDLLGWAIQHEVDHLNGILFTERIRDLST------LRD 174

Query: 165 LVQLRD 170
           + + RD
Sbjct: 175 ITKERD 180


>gi|291280498|ref|YP_003497333.1| polypeptide deformylase [Deferribacter desulfuricans SSM1]
 gi|290755200|dbj|BAI81577.1| polypeptide deformylase [Deferribacter desulfuricans SSM1]
          Length = 167

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 102/168 (60%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  + ++ +P+P+L+ +S+ + ++  DI N+I ++++ M + +   G+AA QIG L R++
Sbjct: 1   MPIREVLTYPNPLLKEISKEVTELTDDIKNIIKDLVDTMDATSHSTGIAAPQIGELVRII 60

Query: 60  VIDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            ID   +   KN     V INP+I+ + +     +EGC+S+PDY  +V R+  + V+++D
Sbjct: 61  AIDPGKNKKCKNHHGKRVLINPEIVKW-EGLIQSREGCMSVPDYTGNVNRAEKVVVQFLD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            N Q     A+G  A  LQHE+DHL+GILFID +   + D+  +K  K
Sbjct: 120 ENLQPGAFEAEGFEAILLQHEIDHLDGILFIDRIISKRTDLFRRKKYK 167


>gi|256587795|gb|ACU98927.1| polypeptide deformylase [Propionibacterium jensenii]
          Length = 200

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + +  + +P+L   ++P+   + D+  LI +M     + DG+GLAA Q+G+   L + 
Sbjct: 20  TLRRVTRWSEPVLHASTQPVTDFDDDLHELIRDMFVTNAAADGVGLAATQVGLSLSLFIY 79

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD---FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +  D     +     NP++   +          EGCLS P     + R    T    D  
Sbjct: 80  NCPDDDGVVHKGAICNPQVTLPTGRDRNLVSVDEGCLSWPGGFQPLARPDLATCTGQDPW 139

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +   G  A CLQHE DH NGI+F D LS+  R  + ++   L  L
Sbjct: 140 GTPLSVTGTGYFARCLQHETDHCNGIVFGDRLSKRSRRKLDEQHENLDHL 189


>gi|269124846|ref|YP_003298216.1| peptide deformylase [Thermomonospora curvata DSM 43183]
 gi|268309804|gb|ACY96178.1| peptide deformylase [Thermomonospora curvata DSM 43183]
          Length = 178

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 80/161 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +P+    DP+LR    P+   ++ +  L+D+M   MY+ +G GLAA QIGV  ++ V D
Sbjct: 13  VRPIRRLGDPVLRTECDPVRTFDAGLRRLVDDMFATMYAANGAGLAANQIGVSLQVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            +D   R++    INP ++    D  V  EGCLS+P  R    R     V  +D + +  
Sbjct: 73  CEDDLGRRHVGHVINPVLVAEDGDIVVEDEGCLSVPGLRFPTPRYRHAVVEGVDLDNKPL 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            I   G  A CLQHE  HL G ++ID L    R    + + 
Sbjct: 133 RIEGTGYFARCLQHETYHLRGGVYIDVLKGETRREAMRAIR 173


>gi|224531760|ref|ZP_03672392.1| peptide deformylase [Borrelia valaisiana VS116]
 gi|224511225|gb|EEF81631.1| peptide deformylase [Borrelia valaisiana VS116]
          Length = 165

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 3/156 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I  I+  I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQINNIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVREN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P+VFINP I   S + + Y+EGCLSIP    D+ R   I V + D N +   I
Sbjct: 62  KMAR---PLVFINPLITETSYELNSYREGCLSIPGVYYDLMRPKAIVVSFYDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                LA  +QHE+DHLNG+LFID+     ++ + K
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEERIKNKLLK 154


>gi|297623929|ref|YP_003705363.1| peptide deformylase [Truepera radiovictrix DSM 17093]
 gi|297165109|gb|ADI14820.1| peptide deformylase [Truepera radiovictrix DSM 17093]
          Length = 212

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 32/194 (16%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI---- 61
           +  F DP+LR+V+RP+   + ++  L  +M+E M+  +G+GLAA QIG+  RL V     
Sbjct: 5   IRYFGDPVLRKVARPVTHFDGELETLAKDMIETMFEANGVGLAAPQIGLSKRLFVALELA 64

Query: 62  ----------------------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99
                                 + ++        V +NP+II  S       +GCLS+P 
Sbjct: 65  PRAAEEAAGQEGEAEAEALSPDEKRERWGVVAEHVMVNPEIIARSG-TQYGVDGCLSVPG 123

Query: 100 YR-ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                +KR   + VRY D         A+G  A  +QHELDHL+G+LF D L   +R   
Sbjct: 124 LFIEKMKRDRTVRVRYQDLQGAWHEREAEGHFAHVIQHELDHLDGVLFFDRLPEAERRAF 183

Query: 159 T----KKMSKLVQL 168
                +++++L + 
Sbjct: 184 MEAHRRELAELQRQ 197


>gi|297544786|ref|YP_003677088.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842561|gb|ADH61077.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 159

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 96/153 (62%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ ++P+ +INS ++ ++D+M++ MY  +G+GLAA Q+G+L RL+V
Sbjct: 1   MAIRYIRKIGDEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+I+ + +   V  EGCLSIP    +VKR   + V+Y+D   +
Sbjct: 61  IDIGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHLNG+LFID   R 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147


>gi|291296560|ref|YP_003507958.1| peptide deformylase [Meiothermus ruber DSM 1279]
 gi|290471519|gb|ADD28938.1| peptide deformylase [Meiothermus ruber DSM 1279]
          Length = 194

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 16/178 (8%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    P+ ++ DP+L++ + P++   S I  L +NMLE M+   G+GLAA Q+GV  RL 
Sbjct: 1   MAEILPIRLYGDPVLKKKALPVQDF-SGIPQLAENMLETMFEARGVGLAAPQVGVSQRLF 59

Query: 60  VI-DLQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRAD-VKR 106
           V  +  D    + P            V +NP I   +   S+  EGCLS+P   A+  +R
Sbjct: 60  VAAEYLDDDEEEGPEADLKTRVKQLYVMVNPVITYRAGRQSIL-EGCLSLPGLYAEGAQR 118

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + V Y D + Q +++ A+G LA  +QHE+DHL+GILF   +S   R    ++  +
Sbjct: 119 DLQVRVEYQDEHGQKKVLEAEGYLAVVMQHEIDHLDGILFFQRMSFADRQKFLEEHRE 176


>gi|17433049|sp|Q9FUZ0|DEF1A_SOLLC RecName: Full=Peptide deformylase 1A, chloroplastic; Short=PDF 1A;
           AltName: Full=Polypeptide deformylase; Flags: Precursor
 gi|11320968|gb|AAG33981.1|AF271258_1 peptide deformylase-like protein [Solanum lycopersicum]
          Length = 277

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSR--PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
               +V   DP+L   S+  P+E+I S+ I  +I+ M++VM +  G+GLAA QIG+  ++
Sbjct: 87  AMPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEMVKVMRNAPGVGLAAPQIGIPLKI 146

Query: 59  VVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +V++  +      P              +V INPK+    +  +++ EGCLS+  +RA V
Sbjct: 147 IVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPKLKKKGNKTALFFEGCLSVDGFRAVV 206

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +R   + V  +D N +   + A G  A  LQHE DHL+G L++D ++ 
Sbjct: 207 ERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYDHLDGTLYVDKMAP 254


>gi|257486818|ref|ZP_05640859.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330988665|gb|EGH86768.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331010288|gb|EGH90344.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 179

 Score =  166 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S +  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRSILKMGDERLLRIAPPVPADMFGSSKLNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   Q     A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|294624946|ref|ZP_06703599.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294665783|ref|ZP_06731054.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600746|gb|EFF44830.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292604435|gb|EFF47815.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 171

 Score =  166 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIREIIRMGDKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S++     EGCLSIP  RA + R  FI  R  
Sbjct: 61  FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             +       A+G  A  +QHE DHL G L+   +         
Sbjct: 121 APDGSPIERDAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164


>gi|255525805|ref|ZP_05392735.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296186362|ref|ZP_06854766.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255510538|gb|EET86848.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|296049163|gb|EFG88593.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 156

 Score =  166 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 60/155 (38%), Positives = 90/155 (58%), Gaps = 4/155 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++ F D IL+R SR +EK++ +++ L++++ + +Y+  GIGLAA QIGVL +++ 
Sbjct: 1   MAVKQILQFGDNILKRSSRRVEKVDEELLGLVEDLKDSLYNGTGIGLAAPQIGVLKKVIF 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL+D      P++ INPKII          EGCLS P Y   V R   + V       +
Sbjct: 61  IDLRDKTE---PILLINPKIIKKIGKEDSV-EGCLSYPGYEGIVVRPKKVIVAGKSLKWE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
                A+GLLA    HE+DHL+GIL+ D   ++ R
Sbjct: 117 DVEYTAEGLLAKAFCHEIDHLSGILYTDKAKKIYR 151


>gi|331017341|gb|EGH97397.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 179

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRNILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I           EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D + Q     A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|32266068|ref|NP_860100.1| peptide deformylase [Helicobacter hepaticus ATCC 51449]
 gi|39930847|sp|Q7VIN5|DEF_HELHP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|32262117|gb|AAP77166.1| N-formylmethionyl-tRNA deformylase [Helicobacter hepaticus ATCC
           51449]
          Length = 181

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 95/150 (63%), Gaps = 5/150 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P+ +LR+ S P+E  + ++ N +D+M E +  + G+GLAA+Q+G   R+++I++  
Sbjct: 13  ILKYPNALLRKKSIPVEIFDDNLHNFLDDMYETLIESKGVGLAAIQVGRAERILIINIPR 72

Query: 66  HA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                 ++++ +  INP  +T  ++   ++EGCLS+PD+   +KR   +++ Y D     
Sbjct: 73  EEDKQQYKEDLLEIINPTFLTQ-EECVEWEEGCLSVPDFYESIKRFDKVSIAYKDRYGND 131

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +I+ A G LA  +QHE+DHLNG+LF+D L 
Sbjct: 132 RILKAQGFLAVAIQHEIDHLNGVLFVDKLP 161


>gi|18394237|ref|NP_563974.1| PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase [Arabidopsis
           thaliana]
 gi|11320952|gb|AAG33973.1|AF250959_1 peptide deformylase-like protein [Arabidopsis thaliana]
 gi|332191194|gb|AEE29315.1| peptide deformylase 1A [Arabidopsis thaliana]
          Length = 269

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +R ++  +I S+ I  +ID+M++VM    G+GLAA QIGV  R++V+
Sbjct: 82  EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 141

Query: 62  D--------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +              L       + MV +NP +   S+  +++ EGCLS+  +RA V+R 
Sbjct: 142 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 201

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V   D   +   + A G  A  LQHE DHL+G L++D +  
Sbjct: 202 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 246


>gi|223994725|ref|XP_002287046.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335]
 gi|220978361|gb|EED96687.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335]
          Length = 180

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 6   LVIFPDPILRRVSRPIEKI-----NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           ++ +P P LR  +  I +       S+I  +   M  VMY+T+G GLAA Q+G+  RL+V
Sbjct: 5   VLKYPHPALRAPNAEITEEELTGPGSEISRIAKEMFLVMYATNGAGLAAPQVGINKRLMV 64

Query: 61  ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +   D       ++ +NPKI+ FS    + QEGCLS P+   DV+RS +I V   +   
Sbjct: 65  YNESGDSKRWMQEVIMVNPKIVEFSSATDIEQEGCLSFPEMGGDVQRSKWIKVEAQNLKG 124

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +       G  A   QHE DHL+G++++D LS   R  +  ++ +LV+ 
Sbjct: 125 KKIKKKFTGWEARIFQHEYDHLDGVVYVDRLSEEGRKEVQGRLDELVEE 173


>gi|167040394|ref|YP_001663379.1| peptide deformylase [Thermoanaerobacter sp. X514]
 gi|300914478|ref|ZP_07131794.1| peptide deformylase [Thermoanaerobacter sp. X561]
 gi|307724286|ref|YP_003904037.1| peptide deformylase [Thermoanaerobacter sp. X513]
 gi|238687587|sp|B0K292|DEF_THEPX RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166854634|gb|ABY93043.1| peptide deformylase [Thermoanaerobacter sp. X514]
 gi|300889413|gb|EFK84559.1| peptide deformylase [Thermoanaerobacter sp. X561]
 gi|307581347|gb|ADN54746.1| peptide deformylase [Thermoanaerobacter sp. X513]
          Length = 166

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 99/163 (60%), Gaps = 6/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ ++P+ +INS I+ ++++M + MY  DG+GLAA QIGVL RLVV
Sbjct: 1   MAIRYVRKIGDEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+I+ + +   V  EGCLSIP    +VKR   + V+Y+D   +
Sbjct: 61  IDVGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            + I  + LLA  L HE+DHLNG+LFID   R   +   +++ 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRFLDEEEKEQVK 157


>gi|89070115|ref|ZP_01157445.1| peptide deformylase [Oceanicola granulosus HTCC2516]
 gi|89044336|gb|EAR50479.1| peptide deformylase [Oceanicola granulosus HTCC2516]
          Length = 162

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 93/163 (57%), Gaps = 2/163 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++P   LR  + P+ +++  +  + D M+E M +  G GLAA Q+G+  RL V+
Sbjct: 1   MSRPFVMWPHKALRTRAAPVAQVDDAVRAIWDEMVEAMEAMPGYGLAAPQLGIGLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      +   +   NP+++  S +   ++E   ++P   A +KR   +TVR+++   + 
Sbjct: 61  DASTARGKA--VRLANPELLHASVELREHEEASPNLPGVGAALKRPRAVTVRFLNAAGET 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +     GL AT +QH+LDHL+G ++ D LSR +R+M+ K+  K
Sbjct: 119 EERDFVGLWATSVQHQLDHLDGRMYFDRLSRTRREMLLKRARK 161


>gi|300854550|ref|YP_003779534.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300434665|gb|ADK14432.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 150

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 7/154 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +    D ILR+  R +EK++  I+ L+ +M + +++T +G  +AA Q+GVL R V
Sbjct: 1   MALRNIRTLGDEILRKKCRAVEKVDDRILTLLKDMADTLHNTENGAAIAAPQVGVLRRAV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ +       +  +NP+II       V  EGCLSIP+    + R A + V+ ++   
Sbjct: 61  VIDMGEGI-----ICLVNPEIIEEEGSQEVI-EGCLSIPNKWGKLIRPAKVKVKALNEKG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +   I  +G LA CL HE++HL+GILFID ++  
Sbjct: 115 EEFTITGEGDLAKCLCHEIEHLDGILFIDKVTEF 148


>gi|225442881|ref|XP_002281834.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743418|emb|CBI36285.3| unnamed protein product [Vitis vinifera]
          Length = 277

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
               +V   DP+L   ++ +E     +  I  +ID+M++ M +  G+GLAA QIG+  R+
Sbjct: 87  ALPEIVKAGDPVLHESAQEVEPGEIGSDRIQKIIDDMIKAMRTAPGVGLAAPQIGIPLRI 146

Query: 59  VV---------IDLQD--HAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           +V          D +D   A  + P   +V +NPK+    +  + + EGCLS+  +RA V
Sbjct: 147 IVLEDTKEYISYDRKDVIKAQERRPFDLLVILNPKLRKKGNRTAFFFEGCLSVDGFRAVV 206

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +R   + V  +  N +   + A G  A  LQHE DHL+G L++D +  
Sbjct: 207 ERHLQVEVTGLSRNGKPIKVDASGWKARILQHECDHLDGTLYVDKMVP 254


>gi|218680973|ref|ZP_03528870.1| peptide deformylase [Rhizobium etli CIAT 894]
          Length = 164

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++ +P P L+ V  P+      +  L D++L  M +  G+G+ A  IGVL R+ V
Sbjct: 1   MPIRPILHYPHPALKTVCAPVSDFGPSLAELADDLLATMRAAPGVGITAAHIGVLSRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +   +++NP+I  FS +   + EG +S+P    +V R   I  RY D    
Sbjct: 61  LELDKAFGVR---LYVNPEITWFSKETMNHAEGSVSMPGATDEVIRPRAIRFRYQDGAGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                A+G  A C+QHE+D L+GI ++  LSRL+RD + KK  K
Sbjct: 118 VHEEAAEGFHAICIQHEVDQLDGIFWLQRLSRLRRDRLVKKWEK 161


>gi|330971091|gb|EGH71157.1| peptide deformylase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 179

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIGV  +L
Sbjct: 1   MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + INP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   Q     A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|183980768|ref|YP_001849059.1| polypeptide deformylase Def [Mycobacterium marinum M]
 gi|238690954|sp|B2HQN4|DEF_MYCMM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|183174094|gb|ACC39204.1| polypeptide deformylase Def [Mycobacterium marinum M]
          Length = 197

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 71/162 (43%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+          D+  LI  M E M +  G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60

Query: 56  YRLVVIDLQDHAHRK--NPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D  D   +      V INP + T        D     EGCLS+P       R+ 
Sbjct: 61  LRLFVYDCADDRGKAAHRRGVVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGRAT 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D       +   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCL 162


>gi|254461985|ref|ZP_05075401.1| polypeptide deformylase [Rhodobacterales bacterium HTCC2083]
 gi|206678574|gb|EDZ43061.1| polypeptide deformylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 163

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  +  + +I  ++  +  ++++ M +  G+G+ A QIGV+ RL V
Sbjct: 1   MSVRRCIPWPDKRLRSKAADVSEITDEVCAVWTDLIDTMEAMPGVGMGANQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S +   + E   ++P   A +KR   +TV++M+    
Sbjct: 61  LDAS--NERGKVIRMANPEILHASAELREHDEASPNLPGVSAVIKRPRAVTVKFMNDKGI 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
                  GL AT +QH++DHLNG L+ DHLSR+KR M+ KK  KL
Sbjct: 119 IDRRDFVGLWATSVQHQIDHLNGKLYFDHLSRVKRTMLIKKAQKL 163


>gi|84685502|ref|ZP_01013400.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666659|gb|EAQ13131.1| peptide deformylase [Rhodobacterales bacterium HTCC2654]
          Length = 158

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 2/159 (1%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +PD  LR  ++P+E +  ++  + D M   M +  G+GLAAVQ+G++ RL V+D  +   
Sbjct: 2   WPDKRLRTAAQPVEAVTDEVRAIWDEMTLAMDAMPGVGLAAVQLGIMQRLAVVDASE--E 59

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
           R   +   NP+++  S     + E   ++P   A + R   +TVR+MD     +     G
Sbjct: 60  RGKAVRMANPEVLHESVKLREHDEASPNLPGVWATISRPRAVTVRFMDETGAVREQDFVG 119

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           L AT +QH++DHLNG ++ DHLS+LKRD +  K  K  +
Sbjct: 120 LWATSVQHQIDHLNGKMYFDHLSKLKRDRLIAKARKAKR 158


>gi|239977965|ref|ZP_04700489.1| polypetide deformylase [Streptomyces albus J1074]
 gi|291449876|ref|ZP_06589266.1| polypetide deformylase [Streptomyces albus J1074]
 gi|291352825|gb|EFE79727.1| polypetide deformylase [Streptomyces albus J1074]
          Length = 206

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 6/168 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
             + + +  + IL R  R + +     + +  L+D+M     + +G GLAA Q+GV  RL
Sbjct: 20  AVRRITVVGEEILHRPCREVTEDAFGTAGLAALVDDMFATNQAAEGAGLAANQVGVDLRL 79

Query: 59  VVIDLQDHAHRKNPMVFINPKI---ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            V D+ D    ++     NP +              EGCLS+P     V R     VR  
Sbjct: 80  FVWDITDDWGVRHVGHLANPVLDDVPATDRRLVEEPEGCLSVPGPYRVVPRLDRAVVRGR 139

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           D + +  +I   G  A CLQHE DHL G L++D L+R +R    ++M 
Sbjct: 140 DKDGRPLVIEGRGYFARCLQHETDHLRGHLYLDRLARRERKSALQEMR 187


>gi|159900945|ref|YP_001547192.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893984|gb|ABX07064.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 211

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 19/188 (10%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   DP    +LR  ++ I   +  +  L+D+M+E M    G+G+AA Q+GV  
Sbjct: 1   MAVRRVLQIEDPTDAVVLRAKAKRITSFDQSLAGLVDDMIETMREARGVGIAAPQVGVSR 60

Query: 57  RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           R+VVI+                      V +NP+II  S++  + QEGCLS+P     V 
Sbjct: 61  RVVVIEEPAQYEEHEDGTQTQIAPAVLYVMVNPEIIKASEETHMLQEGCLSLPGRYTKVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYA----DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           R+ ++T++Y D   + Q +      D  +    QHELDHL+GI+F D ++   + +  +K
Sbjct: 121 RNKWVTIKYYDLKGREQRLRHIPAEDYKVGHIAQHELDHLDGIMFTDRMTEESKLVDYRK 180

Query: 162 MSKLVQLR 169
            S+  +L+
Sbjct: 181 ESESARLK 188


>gi|154505954|ref|ZP_02042692.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149]
 gi|153793972|gb|EDN76392.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149]
          Length = 159

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D IL +  +P+ K+      LI++ML+ MY   G+GLAA Q+GVL ++VV
Sbjct: 1   MAIREVRIMGDDILEKQCKPVTKMTMRTKILIEDMLDTMYEKYGVGLAAPQVGVLKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+II  S +    +EGCLS+P     V R  ++ VR ++   +
Sbjct: 61  IDVGE-----GPIVLINPEIIETSGE-QTGEEGCLSLPGKWGIVTRPNYVKVRALNEEME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +  +GLLA    HE+DHL G ++++ +  
Sbjct: 115 EVELEGEGLLARAFCHEIDHLAGHMYVERVED 146


>gi|58580698|ref|YP_199714.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425292|gb|AAW74329.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 212

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+  +  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 42  MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 101

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +       A         N +I   SD+     EGCLSIP  RA + R  +I  R  
Sbjct: 102 FGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 161

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 162 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 199


>gi|86609579|ref|YP_478341.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558121|gb|ABD03078.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 174

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 7/158 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + L    DPIL +V+ P+ +     + +LI+ ML  +    G+GLAA Q+G L +++
Sbjct: 1   MTFR-LRQLGDPILTQVAEPVTEFKTPALQDLIEGMLATLKEAQGVGLAAPQVGSLLQVL 59

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++  + +          P+V +NP+++  S +  +  EGCLS+P+ R  V R+  + V Y
Sbjct: 60  IVASRPNPRYPEAPQMQPLVMVNPRLLACSSEQVLGWEGCLSVPNCRGLVARAREVEVEY 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                  Q +      A   QHE DHL G +F+    R
Sbjct: 120 YTPEGVQQRVVWQDFPARIFQHEYDHLMGRVFLQRQPR 157


>gi|312131601|ref|YP_003998941.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
 gi|311908147|gb|ADQ18588.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
          Length = 190

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +   +LR+  + I K   D+  +  NM E MY+  GIGLA  Q+ + YR+ V+
Sbjct: 1   MIYPIIGYGATVLRKKCQDIVKGELDVKQISQNMFETMYAASGIGLAGPQVNLPYRIFVV 60

Query: 62  DLQ------DHAHRKNPMV------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D +      +     +P +      FIN +I+  + +   Y+EGCLSIP  RADV R   
Sbjct: 61  DGEIINNSAETEEEIDPDLVGFKKTFINAQILEETGEPWPYEEGCLSIPGIRADVYRKPV 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           IT+RY D +         G+ A  +QHE DH+ G+LF D+L+ 
Sbjct: 121 ITIRYFDTDWVEHTESFKGMAARIIQHEYDHIEGVLFTDYLAP 163


>gi|219685342|ref|ZP_03540161.1| peptide deformylase [Borrelia garinii Far04]
 gi|219673115|gb|EED30135.1| peptide deformylase [Borrelia garinii Far04]
          Length = 165

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 3/156 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVREN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P+VFINP II  S + + Y+EGCLSIP    D+ R   I V + D N +   I
Sbjct: 62  RMAR---PLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                LA  +QHE+DHLNGILFID+     ++ + K
Sbjct: 119 EDSDFLARIIQHEMDHLNGILFIDYYEERIKNKLLK 154


>gi|330994009|ref|ZP_08317939.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1]
 gi|329758955|gb|EGG75469.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1]
          Length = 180

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+L + +R +       +  L+ +M+E M    G GLAA Q+    RL 
Sbjct: 5   MTLLKIARMGHPVLLQPARAVTDPQAPALRTLVADMIETMLDAQGAGLAAPQVHHGLRLF 64

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V  +       +      P   INP +     +     EGCLSIP  R  V R   I  R
Sbjct: 65  VYQVPPGRSAGEDDPPCPPAALINPVLDPVDTEMVDRLEGCLSIPGMRGWVPRYRRIAYR 124

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ++   Q     A G LA  LQHE DHL+GIL+   +  L R     +M++
Sbjct: 125 GINGQGQPVHGVASGFLANVLQHEYDHLDGILYPMRMPDLGRMGFDSEMAR 175


>gi|28868804|ref|NP_791423.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213969590|ref|ZP_03397726.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
 gi|301383364|ref|ZP_07231782.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
 gi|302058804|ref|ZP_07250345.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
 gi|302134493|ref|ZP_07260483.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|32363152|sp|Q886I1|DEF2_PSESM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|28852043|gb|AAO55118.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213925686|gb|EEB59245.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
          Length = 179

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRNILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I           EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D + Q     A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|148380240|ref|YP_001254781.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|153933663|ref|YP_001384545.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|153937608|ref|YP_001388061.1| peptide deformylase [Clostridium botulinum A str. Hall]
 gi|148289724|emb|CAL83829.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929707|gb|ABS35207.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397]
 gi|152933522|gb|ABS39021.1| peptide deformylase [Clostridium botulinum A str. Hall]
          Length = 150

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+T +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    V R A +TV+ ++ + 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGRVIRPAKVTVQALNEDG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|302187708|ref|ZP_07264381.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
 gi|330896888|gb|EGH28478.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330942465|gb|EGH45062.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330977866|gb|EGH77769.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 179

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + INP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   Q     A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|330967399|gb|EGH67659.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 179

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRNILKMGDERLLRIAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I           EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D + Q     A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|326389546|ref|ZP_08211113.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200]
 gi|325994551|gb|EGD52976.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200]
          Length = 159

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ ++P+ +IN  I+ ++++M + MY  DG+GLAA QIGVL RLVV
Sbjct: 1   MAIRYIRKNGDEVLRKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+I+ + +   V  EGCLSIP    +VKR   + V+Y+D   +
Sbjct: 61  IDVGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHLNG+LFID   R 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147


>gi|226949660|ref|YP_002804751.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|226844106|gb|ACO86772.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|322806631|emb|CBZ04200.1| peptide deformylase [Clostridium botulinum H04402 065]
          Length = 150

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+T +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|317506338|ref|ZP_07964150.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974]
 gi|316255348|gb|EFV14606.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974]
          Length = 198

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 17/182 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L R +  +   +      D++ L+++M E + ++ G+GLAA Q+GV 
Sbjct: 1   MTILPIRIAGDPVLHRPTELVRLTDEGAAPPDVIVLLEDMYETLKASHGVGLAATQVGVG 60

Query: 56  YRLVVIDLQDHAHRKN---PMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRS 107
            RL V D  D    K        INP + T        D    +EGCLS P  R    R+
Sbjct: 61  LRLFVYDCPDDTSGKRVSRKGEVINPVLETSDIPEGMPDEDEDEEGCLSAPGLRYPTGRA 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           A+  V  +D   Q   I   GL A  LQHE+ HL+G L++D L         +K  K V+
Sbjct: 121 AWAKVTGVDRAGQPVEIEGTGLFARMLQHEVGHLDGKLYLDVLVG----RWARKAKKAVK 176

Query: 168 LR 169
             
Sbjct: 177 QE 178


>gi|227872147|ref|ZP_03990517.1| peptide deformylase [Oribacterium sinus F0268]
 gi|227842005|gb|EEJ52265.1| peptide deformylase [Oribacterium sinus F0268]
          Length = 164

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 4/151 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D IL +  + I+++     +LI +M E MY  +G+GLAA Q+G+L +L V
Sbjct: 1   MAIRSIRKIGDSILEKKCKEIKEMTDKTRDLIQDMFETMYDANGVGLAAPQVGILKQLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D        V INPKI    ++    +EGCLS+P     V R   I +  +D N +
Sbjct: 61  VDIGDGVR----YVCINPKIEAVGEEEQCGEEGCLSVPGKEGKVTRPMNIHLEALDQNME 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + A G LA    HE DHL G+L+ + + 
Sbjct: 117 PFSLDASGFLARAFCHEYDHLQGVLYTEKVE 147


>gi|78049192|ref|YP_365367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325926668|ref|ZP_08187982.1| peptide deformylase [Xanthomonas perforans 91-118]
 gi|78037622|emb|CAJ25367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325543020|gb|EGD14469.1| peptide deformylase [Xanthomonas perforans 91-118]
          Length = 171

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIREIIRMGDKRLLRVAPPVSNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S++     EGCLSIP  RA + R  FI  R  
Sbjct: 61  FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             +       A+G  A  +QHE DHL G L+   +         
Sbjct: 121 APDGTPIERDAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164


>gi|257068838|ref|YP_003155093.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
 gi|256559656|gb|ACU85503.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
          Length = 163

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR    PI  I      L+ ++ + +      G+AA QIGV  R   
Sbjct: 1   MTIRPIRIVGDPVLRTPCDPIRTITEGTRTLVRDLKDTVDDEGRAGVAANQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               +          +NP I+  S++     EGCLS+P       RSA+     MD   +
Sbjct: 61  WHFVETGEIG---CILNPVIVELSEELQHDDEGCLSVPGLFYPRTRSAYARCVGMDVEGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +GL+A  +QHE+ HL+G L+ID L R  +    +++ +
Sbjct: 118 EIELAGEGLVARLIQHEVGHLDGELYIDGLERSVKKRALRQIRE 161


>gi|55297586|dbj|BAD68932.1| peptide deformylase-like [Oryza sativa Japonica Group]
          Length = 326

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 38/200 (19%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST----------------------- 42
           +V +PDPILR  ++ I   + ++ +L D M +VMY+                        
Sbjct: 99  VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYNASDSICVTLLNKQIKKGLLSTIAR 158

Query: 43  ---------------DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87
                          DGIGL+A Q+GV  +L+V +          +V +NP +   S   
Sbjct: 159 EDIPPIEPLVSCYRTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRL 218

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
            VY+E CLS P   A+V R   + +   D       +   GL A   QHE DHL GILF 
Sbjct: 219 LVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFF 278

Query: 148 DHLSRLKRDMITKKMSKLVQ 167
           D +S    + + + +  L +
Sbjct: 279 DRMSLDVLESVREGLKDLEK 298


>gi|229592219|ref|YP_002874338.1| peptide deformylase [Pseudomonas fluorescens SBW25]
 gi|229364085|emb|CAY51686.1| peptide deformylase [Pseudomonas fluorescens SBW25]
          Length = 179

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+  E  +  ++  LID+M + M    G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + INP I           EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFEASERYPDAPPVPQTILINPLITPLGPVLEEGYEGCLSVPGMRGAVSRYQQIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   +  + +ADG  A  +QHE DHL G L+   ++   +    + M
Sbjct: 121 GFDPKGEPIVRFADGFHARLVQHECDHLIGRLYPSRITDFSKFGFIEVM 169


>gi|170781748|ref|YP_001710080.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156316|emb|CAQ01464.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 163

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + +F DP+L+ VS  I +I+  +  L++++L+ +      G+AA QIGV  R   
Sbjct: 1   MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP I     +  +  EGCLS+P       R     +  +D + +
Sbjct: 61  YNVGPAFGY-----VLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVISGLDLDGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I   G+LA   QHE+DHL+G++++D L + +R    K++ +
Sbjct: 116 PVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159


>gi|219684773|ref|ZP_03539715.1| peptide deformylase [Borrelia garinii PBr]
 gi|219671718|gb|EED28773.1| peptide deformylase [Borrelia garinii PBr]
          Length = 165

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 3/156 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   L V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIDSIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVV--- 58

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+VFINP II  S + + Y+EGCLSIP    D+ R   I V + D N +   I
Sbjct: 59  RENRMAKPLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                LA  +QHE+DHLNGILFID+     ++ + K
Sbjct: 119 EDSDFLARIIQHEMDHLNGILFIDYYEERIKNKLLK 154


>gi|153955363|ref|YP_001396128.1| Def3 [Clostridium kluyveri DSM 555]
 gi|219855782|ref|YP_002472904.1| hypothetical protein CKR_2439 [Clostridium kluyveri NBRC 12016]
 gi|146348221|gb|EDK34757.1| Def3 [Clostridium kluyveri DSM 555]
 gi|219569506|dbj|BAH07490.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 150

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ ++ +++ I  ++++M + MY T +G GLAA QIG+L RL 
Sbjct: 1   MALRQIRLFGDDILRKKSKEVKAVDNKIRQILNDMADTMYDTENGGGLAAPQIGILKRLA 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII  + +  V  EGCLSIP+    +KR A + +  ++   
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKCAGEQEVI-EGCLSIPNVFGKLKRPAKVIIEALNEEG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              I+     LA C  HE+DHL GILF D ++ 
Sbjct: 115 SKIILKGTKDLAKCFCHEIDHLKGILFTDLVTE 147


>gi|325261897|ref|ZP_08128635.1| peptide deformylase [Clostridium sp. D5]
 gi|324033351|gb|EGB94628.1| peptide deformylase [Clostridium sp. D5]
          Length = 158

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 6/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  D IL +  + + K+      LI++ML+ MY   G+GLAA Q+GVL  +V 
Sbjct: 1   MAIREVRMIGDEILTKQCKEVTKVTLRTKMLIEDMLDTMYEKMGVGLAAPQVGVLKNIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP II  S +    +EGCLS+P     V R   + VR ++ + +
Sbjct: 61  IDVGE-----GPIVLINPVIIEASGE-QTGEEGCLSVPGKWGIVTRPDHVKVRALNEDME 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150
              +  +GLLA    HE+ HL+G L++D +
Sbjct: 115 EFEMEGEGLLARAFCHEIAHLSGELYVDRV 144


>gi|237750767|ref|ZP_04581247.1| polypeptide deformylase [Helicobacter bilis ATCC 43879]
 gi|229373857|gb|EEO24248.1| polypeptide deformylase [Helicobacter bilis ATCC 43879]
          Length = 171

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 89/154 (57%), Gaps = 5/154 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+ ILR +S+ ++  ++ +   +D+M E M   +G+GLAA+Q+    R+++I
Sbjct: 1   MVLEVIHYPNKILRTISKEVQVFDNALHEFLDSMYETMMEHNGVGLAAIQVAKPLRVLII 60

Query: 62  DLQDHA----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++        ++++ +  INP I+    +  ++ EGCLS+P +  +V R + I V+Y D 
Sbjct: 61  NIPREEDNTQYKEDLLEIINPVILHAEGEI-LWNEGCLSVPGFYEEVSRFSQIKVKYQDR 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                    +  +A  LQHE+DHLNGILF+D L 
Sbjct: 120 FGVTHENIFNDFMAVALQHEMDHLNGILFVDKLP 153


>gi|21230162|ref|NP_636079.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769848|ref|YP_244610.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188993065|ref|YP_001905075.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|25452914|sp|Q8PCN7|DEF1_XANCP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|21111696|gb|AAM40003.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575180|gb|AAY50590.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734825|emb|CAP53035.1| Peptide deformylase [Xanthomonas campestris pv. campestris]
          Length = 171

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  +   ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIREIIRMGDKRLLRVAPPVTNLGSDELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +       A         N +I   SD+     EGCLSIP  RA + R   I     
Sbjct: 61  FGFEASERYPEAPAVPRTALANVQIEPLSDEMENGWEGCLSIPGLRAVIPRHRVIRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             +       A+G  A  +QHE DHL G L+   +         
Sbjct: 121 APDGTPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164


>gi|319442383|ref|ZP_07991539.1| polypeptide deformylase [Corynebacterium variabile DSM 44702]
          Length = 215

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 32/193 (16%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-------INSDIMNLIDNMLEVMYSTDGIGLAAVQIG 53
           M   P+VI  DP+L   + P+ +         +++  LI +M E +    G+GLAA Q+G
Sbjct: 1   MSVLPVVICGDPVLHTPTTPVTEPAADQLGEGTELSTLIADMYETLELAHGVGLAANQVG 60

Query: 54  VLYRLVVIDLQDHAHRKN----------------PMVFINP-----KIITFSDDFSVYQE 92
           V  R+ V D  D    +                     INP     +I     D     E
Sbjct: 61  VGLRVFVYDCPDIDGPEGTRKTQEEVDAQGGPMRRGCVINPVLETSEIPETMPDPEDDVE 120

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-- 150
           GCLS+P Y     R+ +  V   D + +   +   G  A CLQHE  HL+G L+ID L  
Sbjct: 121 GCLSVPGYDYPTGRADWARVTGTDEHGEPTSVEGYGFFARCLQHETGHLDGHLYIDMLIG 180

Query: 151 --SRLKRDMITKK 161
             +R  + M+ ++
Sbjct: 181 RNARAAKKMVKRE 193


>gi|118617060|ref|YP_905392.1| peptide deformylase [Mycobacterium ulcerans Agy99]
 gi|158512383|sp|A0PNK2|DEF_MYCUA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|118569170|gb|ABL03921.1| polypeptide deformylase Def [Mycobacterium ulcerans Agy99]
          Length = 197

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 71/162 (43%), Gaps = 12/162 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L   + P+          D+  LI  M E M +  G+GLAA QIG  
Sbjct: 1   MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60

Query: 56  YRLVVIDLQDHAHRK--NPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSA 108
            RL V D  D   +      V INP + T        D     EGCLS+P       R+ 
Sbjct: 61  LRLFVYDCADDRRKAAHRRGVVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGRAT 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  V  +D       +   GL A  LQHE  HL+G L++D L
Sbjct: 121 WARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCL 162


>gi|66047008|ref|YP_236849.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
 gi|63257715|gb|AAY38811.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 179

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   + +            + INP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERNERYPEAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   Q     A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|85705032|ref|ZP_01036132.1| peptide deformylase [Roseovarius sp. 217]
 gi|85670354|gb|EAQ25215.1| peptide deformylase [Roseovarius sp. 217]
          Length = 164

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  + P+ +I      L D M+ VM +  G+GLAA Q+G +  L V
Sbjct: 1   MAPRACLRWPDKRLRMAAAPVTEITDATRALWDEMVAVMEAMPGVGLAATQLGEMQALAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S     + E    +P   A ++R   +TVR+++ + +
Sbjct: 61  VDAS--TARGQAVRMANPEILHASVQLRPHDEASPCLPGVSAMIERPRGVTVRFLNADGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +     GL AT +QH++DHL G ++ D LS +KRDM+ ++  K+
Sbjct: 119 DEERDFVGLWATSVQHQIDHLQGRMYFDRLSTVKRDMLLRRARKI 163


>gi|119946929|ref|YP_944609.1| peptide deformylase [Psychromonas ingrahamii 37]
 gi|119865533|gb|ABM05010.1| peptide deformylase [Psychromonas ingrahamii 37]
          Length = 182

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 6/156 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+     P+LR+ +  +E +   +   LI+ M+  +    G+G+AA QI    R+ ++  
Sbjct: 10  PIAQLGHPVLRQRATEVENVLADECQQLINQMMFAVSEAGGVGIAAPQIHHSVRMFIMCS 69

Query: 64  QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +A   +     P   INP+I+ +S D     EGCLS+P  R  V R + ITVRY+D  
Sbjct: 70  KPNARYPDAPLMAPTAIINPEILHYSSDKVKGWEGCLSVPSMRGLVPRHSQITVRYVDQQ 129

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              Q     G +A   QHELDHLNG+ FID L   +
Sbjct: 130 GNKQQQELTGFIARIFQHELDHLNGLTFIDQLESTQ 165


>gi|307328424|ref|ZP_07607600.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306885997|gb|EFN17007.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 227

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 5   PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V    P+LR+ + P E       +  L+  M E M+S  G+GLAA QIGV  RL VI+
Sbjct: 21  PIVSAGVPVLRQPALPYEGQLAADQLDRLLAAMRETMHSAPGVGLAAPQIGVPLRLAVIE 80

Query: 63  LQD---------HAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                             P  V +NP         + + EGCLSIP ++A V R   I +
Sbjct: 81  DPAEVAAEVQEVRGRVPQPYRVLVNPGYEPVGHGRAAFFEGCLSIPGWQAVVSRPDRIRL 140

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           R  D   +       G  A  +QHE DHL+G+L++D
Sbjct: 141 RGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176


>gi|168183924|ref|ZP_02618588.1| peptide deformylase [Clostridium botulinum Bf]
 gi|182672944|gb|EDT84905.1| peptide deformylase [Clostridium botulinum Bf]
          Length = 150

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+T +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|282895330|ref|ZP_06303532.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9]
 gi|281199636|gb|EFA74496.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9]
          Length = 178

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 1   MVKKP-LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  K  ++   + +L++ +  IE IN  +I  LID+++  +  ++G+G+AA Q+    RL
Sbjct: 1   MTGKSSIIQLGNLLLQQKATEIEAINDREIQQLIDHLITTVAQSNGVGIAAPQVAQSLRL 60

Query: 59  VVIDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++  +      HA    P   INPKI+ +  + +   EGCLS+P  R  V R   I V 
Sbjct: 61  FIVASRPNPRYPHAPEMEPTPMINPKIVGYGTEITKGWEGCLSVPGIRGLVPRYERIQVE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Y D N   Q       +A   QHE DHL G++F+D +   +  +   +  KL+  R
Sbjct: 121 YTDRNGNFQKQELVNFVARIFQHEYDHLEGLVFLDRVESPQDLISEAEYQKLMNQR 176


>gi|325119980|emb|CBZ55533.1| Peptide deformylase, related [Neospora caninum Liverpool]
          Length = 374

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 2/151 (1%)

Query: 3   KKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           KK +++ P P+LR  S P  + +  +   +   +  +MY   GIGLAA Q+G+  +++V 
Sbjct: 223 KKEVLVAPHPLLRLPSHPEADWMAKETKAIARELFAIMYRDGGIGLAAPQVGLSLQMIVW 282

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +            VF+NP+I++ S       EGCLS+P   A V+R     VRY      
Sbjct: 283 NPTGGFREVSQERVFLNPRILSLSGPLVSDVEGCLSVPGVFAPVERPMHARVRYTSLEGD 342

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +   GL A  +QHE+DHL+GILF+D   
Sbjct: 343 QHEVNLSGLEARVVQHEIDHLHGILFVDRAK 373


>gi|258593594|emb|CBE69935.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [NC10
           bacterium 'Dutch sediment']
          Length = 176

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +     P+LR+V+ P+       ++I  LID+M+E M   +G+G+AA Q+ V  +
Sbjct: 1   MAILKVARLGHPVLRQVAPPVRPETIREAEIQRLIDDMIETMREYEGVGIAAPQVHVSKQ 60

Query: 58  LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           + VI+ + +    +       V IN ++   + +     EGCLS+ D+R    R   +  
Sbjct: 61  IAVIESKGNTRYPDAPEIPLTVLINLEVTPLAPELEDDWEGCLSLIDFRGQTPRYQQVRA 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + +D   +     A G  A  LQHE DHL G LFID +  L+      + S+  +
Sbjct: 121 KALDREGRSFEFVATGFHARVLQHERDHLLGKLFIDRMKSLETLSYLPEYSRYWK 175


>gi|188996826|ref|YP_001931077.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931893|gb|ACD66523.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 169

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M K  ++ +PD  L+R S  +     +    I+ +   MY++ G +G+AA Q+    R +
Sbjct: 1   MEKLEILKYPDERLKRKSIEVVDFGKEFKEFIEKLTYTMYNSPGGVGIAAPQVNNPIRTI 60

Query: 60  VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++D     H+ N +     V  NPKI+    +  +++EGC+S+PDY  +VKR  +I V  
Sbjct: 61  IVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEI-IFREGCMSVPDYTGNVKRFYYIKVEA 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            D N        +G  A  +QHE+DHL G +FI+ +   K D+  +K+ K
Sbjct: 120 QDINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKVYK 168


>gi|320327457|gb|EFW83470.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330877286|gb|EGH11435.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 179

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E ++S  G+GLAA QIG+  +L
Sbjct: 1   MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETIHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   Q     A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|225018698|ref|ZP_03707890.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum
           DSM 5476]
 gi|224948426|gb|EEG29635.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum
           DSM 5476]
          Length = 152

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V+  D ILR+  R +   N  + +L+D++ E M+  DG+GLAA Q+GVL R VV
Sbjct: 1   MAIRTIVVDDDSILRKKCREVIDYNKRLHDLLDDLAETMHKADGVGLAAPQVGVLRRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  +NP+II  S       EGCLS P+    V+R   +TV+  D + +
Sbjct: 61  IDVGE-----GVIELVNPEIIKKSGS-QNGAEGCLSYPNEFGMVERPMQVTVKAFDRDGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +    LLA  + HE+DHL+GI+F D  + +
Sbjct: 115 EFKLIGKELLARAICHEVDHLDGIVFKDLATEM 147


>gi|53804337|ref|YP_113830.1| peptide deformylase [Methylococcus capsulatus str. Bath]
 gi|53758098|gb|AAU92389.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
          Length = 191

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   +P+LR+ +RP+      ++ +  LI +M E M    G+GLAA QIG   +L VI+
Sbjct: 10  IVQAGEPVLRQRARPLSPEEIRSAAVQALIGHMRETMRDAPGVGLAAPQIGQGLQLAVIE 69

Query: 63  LQDHAHR-----------KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            +   HR           + P+   V +NP+I+  S++  V+ EGCLS+  + A V+R+ 
Sbjct: 70  DRADYHRGLSAEELAARGREPVPFHVIVNPEIVARSEETDVFHEGCLSLAGFSARVERAR 129

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           ++ V  +D   + Q I A G  A  LQHE+DHL+G L+ID +  
Sbjct: 130 WVRVSCLDHRGEPQTIEASGWYARILQHEIDHLHGRLYIDRMDP 173


>gi|209523408|ref|ZP_03271963.1| peptide deformylase [Arthrospira maxima CS-328]
 gi|209496150|gb|EDZ96450.1| peptide deformylase [Arthrospira maxima CS-328]
          Length = 177

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 8   IFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
              DP+LR  ++P+  I  + I +LID+++  +   +G+G+AA Q+G   R++VI  +  
Sbjct: 9   QLGDPVLRDHAQPVANIWEARIQSLIDDLMATVIEKNGVGIAAPQVGYSDRILVIASRPS 68

Query: 67  -----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                A    P   INPKII  S++     EGCLS+P  R  V R   I V Y   +   
Sbjct: 69  IRYPAAPEMEPTAMINPKIIGKSEEMVADWEGCLSVPGIRGIVNRYQAIEVEYTSRDGHL 128

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Q     G +A   QHE DHL GI+F+D ++     M   +  K +
Sbjct: 129 QHRELTGFVARIFQHEYDHLEGIIFLDRVADSHSMMTEDEYQKRI 173


>gi|172041401|ref|YP_001801115.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109]
 gi|171852705|emb|CAQ05681.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109]
          Length = 267

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 72/179 (40%), Gaps = 29/179 (16%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN--------SDIMNLIDNMLEVMYSTDGIGLAAVQI 52
           M   P+VI  DP+L   +  + + +         +    I +M E M    G+GLA  Q+
Sbjct: 45  MTVLPIVIAGDPVLHNPTNKVGEPDLDANGVPTEEFKKFIADMHETMDRAHGVGLAGNQV 104

Query: 53  GVLYRLVVIDLQDHAHRKN----------------PMVFINP-----KIITFSDDFSVYQ 91
           GV  RL V    D                          INP     +I     D    +
Sbjct: 105 GVAKRLFVYHCPDIDGPNGEQRTEEEIAAQGGPMRRGTVINPVLETSEIPETMPDEYEDE 164

Query: 92  EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           EGCLS+P Y     R+ +  V  +D N +   +   G  A CLQHE+ HL+G L+ D L
Sbjct: 165 EGCLSVPGYSFPTGRADWARVTGIDENGEPVTVEGYGFFARCLQHEVGHLDGFLYTDTL 223


>gi|289625972|ref|ZP_06458926.1| peptide deformylase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647973|ref|ZP_06479316.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488188|ref|ZP_07006225.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157467|gb|EFH98550.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330869369|gb|EGH04078.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 179

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I   +       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPQAEAVPQTILLNPLITPLNPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D + Q     A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPDGQRIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|330949875|gb|EGH50135.1| peptide deformylase [Pseudomonas syringae Cit 7]
          Length = 179

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIHNILKMGDERLLRIAPPVPADMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + INP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D   Q  +  A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPQGQPIVRVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|254495945|ref|ZP_05108853.1| peptide deformylase [Legionella drancourtii LLAP12]
 gi|254354823|gb|EET13450.1| peptide deformylase [Legionella drancourtii LLAP12]
          Length = 179

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 11/174 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIM------NLIDNMLEVMYSTDGIGLAAVQIGV 54
           M  + +V   +  L   S P+   +  I        LI NM + M +  G+G+AA QIG 
Sbjct: 1   MTIQTVVKMGNKQLGIPSEPVVDFDPAIRSYPELTELIQNMKDTMDAKGGVGIAAPQIGY 60

Query: 55  LYRLVVIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
             R+++   + +    N       + INP     SD+     EGCLS+P  R  V R   
Sbjct: 61  NKRVIMFGFEKNKRYPNEKPVPFTILINPIYQIMSDELVEEWEGCLSVPGLRGLVPRYKK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           I     D   +     A    A  +QHE DHL+G+LF   L  ++     +++ 
Sbjct: 121 IEYSGYDPEGKLITRVAADFHARIIQHECDHLDGVLFPYRLKDIRFFGYEEELE 174


>gi|229815473|ref|ZP_04445805.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM
           13280]
 gi|229809006|gb|EEP44776.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM
           13280]
          Length = 178

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 2/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ PDP LR+    +E+INSD+  L++ M   M+   G GLAA Q+G   +L +
Sbjct: 1   MEINGIVLSPDPRLRQECAEVEEINSDLRALVERMKVQMFENGGCGLAAPQVGETIQLAI 60

Query: 61  IDLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D +  + +  +P V INP I+  SD+   Y EGCLSIP    +++R   + V   +   
Sbjct: 61  VDTEYTSEKDYDPYVLINPVIVEQSDNLVPYNEGCLSIPGINCEIRRPDHVVVEAYNLEG 120

Query: 120 QHQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +     A G L   CLQHE+DHL+G    + L   +R    ++  
Sbjct: 121 ECIRYEAAGDLFCVCLQHEIDHLHGKTMFERLLPQQRMHAMRQYQ 165


>gi|77460570|ref|YP_350077.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
 gi|77384573|gb|ABA76086.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
          Length = 179

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R++ P+      + ++  LID+M + M S  G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAPPVPAEMLDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + INP I   S       EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFEHSERYPDAEAVPQTILINPLITPLSPLMEEGFEGCLSVPGLRGAVDRYQQIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D   +  +  A G  A  +QHE DHL G L+   ++   +   T+ M
Sbjct: 121 GVDPKGEPIVRVASGFHARVVQHECDHLIGRLYPSRITDFSKFGFTEVM 169


>gi|167037732|ref|YP_001665310.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256752269|ref|ZP_05493132.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116147|ref|YP_004186306.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|238687663|sp|B0KA11|DEF_THEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166856566|gb|ABY94974.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256748837|gb|EEU61878.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929238|gb|ADV79923.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 159

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/153 (41%), Positives = 95/153 (62%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +LR+ ++P+ +INS I+ ++++M + MY  DG+GLAA QIGVL RLVV
Sbjct: 1   MAIRYVRKIGDEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+I+ + +   V  EGCLSIP    +VKR   + V+Y+D   +
Sbjct: 61  IDVGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHLNG+LFID   R 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147


>gi|148259391|ref|YP_001233518.1| peptide deformylase [Acidiphilium cryptum JF-5]
 gi|146401072|gb|ABQ29599.1| peptide deformylase [Acidiphilium cryptum JF-5]
          Length = 209

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 11/178 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    L     P+L   + P+ +    +I  L+ +M E +    G+GLAA Q+ V  RL 
Sbjct: 26  MALLKLARLGHPVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLF 85

Query: 60  VIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +  + +       H   +     INP+++    +     EGCLSIP   A V R+A +T+
Sbjct: 86  IYRVPESRAGGGEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTL 145

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           R +D         A G  A  +QHE DHL+GIL+   L   +         ++ + RD
Sbjct: 146 RAIDATGAPFSREAAGFHARVIQHEADHLDGILYPQRLRDPRLMGFN---EEVARFRD 200


>gi|284052203|ref|ZP_06382413.1| peptide deformylase [Arthrospira platensis str. Paraca]
 gi|291566279|dbj|BAI88551.1| peptide deformylase [Arthrospira platensis NIES-39]
          Length = 177

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M     +    DP+LR  ++P+  I    I +LID+++  +   +G+G+AA Q+G   R+
Sbjct: 1   MADILAVTQLGDPVLRDHAQPVANIWEPRIQSLIDDLMATVIEKNGVGIAAPQVGYSDRI 60

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +VI  +       A    P   INPKII  SD+     EGCLS+P  R  V R   I V 
Sbjct: 61  LVIASRPSIRYPAAPEMEPTAMINPKIIGKSDEMVADWEGCLSVPGIRGIVNRYQAIEVE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Y   +   +     G +A   QHE DHL GI+F+D ++     M   +  K +
Sbjct: 121 YTSRDGHLEHRELTGFVARIFQHEYDHLEGIIFLDRVADSHSMMTEDEYQKRI 173


>gi|318061364|ref|ZP_07980085.1| peptide deformylase [Streptomyces sp. SA3_actG]
 gi|318077742|ref|ZP_07985074.1| peptide deformylase [Streptomyces sp. SA3_actF]
          Length = 242

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 10  PDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            + +L R           ++  L+ +M   MY  +G GLAA Q+ V  RL V D  D   
Sbjct: 60  GEEVLARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEG 119

Query: 69  RKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            ++    +NP I   +         EGCLS+P  + ++ R+    VR +D + +   I  
Sbjct: 120 ARHVGHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEG 179

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            G  A CLQHE DHLNGIL++D L R  R  +   M++
Sbjct: 180 TGYFARCLQHETDHLNGILYVDRLGRRARRTVLTDMAE 217


>gi|307264799|ref|ZP_07546361.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920057|gb|EFN50269.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 159

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/153 (40%), Positives = 94/153 (61%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    D +L++ ++P+ +IN  I+ ++++M + MY  DG+GLAA QIGVL RLVV
Sbjct: 1   MAIRYIRKNGDEVLKKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INP+I+ + +   V  EGCLSIP    +VKR   + V+Y+D   +
Sbjct: 61  IDVGE-----GLLELINPEIV-YEEGEQVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + I  + LLA  L HE+DHLNG+LFID   R 
Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147


>gi|303239362|ref|ZP_07325890.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
 gi|302593148|gb|EFL62868.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
          Length = 155

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 6/160 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + I  D +L +V R ++ I++ I+ L+ +M + MY+ +G+GLAA Q+GVL RLVV
Sbjct: 1   MALRNVRIDGDDVLGKVCRQVDVIDNRILILLKDMADTMYAENGVGLAAPQVGVLKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +  INPKI+    +  +  EGCLS+P+   +V R   + V  ++   +
Sbjct: 61  IDVGE-----GLIELINPKIVKEEGE-VLDIEGCLSVPELVGEVVRPKKVWVEALNTKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              +  + LLA    HE+DHL+GILF     +L      K
Sbjct: 115 KICLEGEDLLARAFCHEIDHLDGILFKSRAIKLINKKELK 154


>gi|187251316|ref|YP_001875798.1| N-formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191]
 gi|238058210|sp|B2KD65|DEF_ELUMP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|186971476|gb|ACC98461.1| N-Formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191]
          Length = 176

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 8/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + +V + + ILR+  +P++   +   +  ++ +M +   S  G GL+A QIG+ +R+
Sbjct: 1   MAVRRIVKYGEDILRQKLKPVDFKTLEPQLDAILQDMHDTCMSFQGAGLSANQIGLTHRI 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            +I + +   +         V INP I++        +EGCLS+P    +++R+  I V 
Sbjct: 61  AMIFIPEKTPKGEAQKFKRYVVINPVIVSKKG-CVTDEEGCLSLPGLWVEIERAESIVVH 119

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            ++       I+A G LA  LQHE+DHL+G +FIDH     +  I K++ KL +
Sbjct: 120 CLNEKGLPVEIHAKGFLAKALQHEIDHLDGKIFIDHADPKLKPEIKKELKKLSK 173


>gi|289178547|gb|ADC85793.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 163

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 6/151 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + + + PDP+LR    PI +I   + NL+ ++L+ +      G++A QIGV  R    
Sbjct: 5   AIREIRVVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFSY 64

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++            +NP +     +     EGCLS+P      KR+ +  VR MD +   
Sbjct: 65  NIDGKIGY-----VLNPVLEETRGE-QYGDEGCLSLPKLWYKTKRADYARVRGMDLDGNE 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ++  DG++   LQHE DHL+G L+ID L +
Sbjct: 119 IVLEGDGIMGRMLQHETDHLDGHLYIDRLEK 149


>gi|222104825|ref|YP_002539314.1| peptide deformylase [Escherichia coli]
 gi|8571125|gb|AAF76758.1|AF218073_7 unknown [Escherichia coli]
 gi|221589252|gb|ACM18249.1| peptide deformylase [Escherichia coli]
          Length = 150

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/134 (38%), Positives = 89/134 (66%), Gaps = 3/134 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCL 134
              + ADGLLA C+
Sbjct: 118 PFELEADGLLAICI 131


>gi|326489213|dbj|BAK01590.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 259

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 19/164 (11%)

Query: 7   VIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV--- 60
           V   DP+L   ++ +   +     I ++ID M+ VM    G+GLAA QIGV  +++V   
Sbjct: 74  VKAGDPVLHEPAQEVSPGDVPSEKIQDIIDQMIAVMRKAPGVGLAAPQIGVPLKIIVLED 133

Query: 61  ------------IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                       ID QD     + +V INPK+   S   + + EGCLS+  YRA V+R  
Sbjct: 134 TQEYISYVSKEDIDAQDRCP-FDLLVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHL 192

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + V  +D N +   + A G  A  LQHE DHL G L++D +  
Sbjct: 193 DVEVSGLDRNGRPMKVEASGWQARILQHECDHLEGTLYVDKMVP 236


>gi|224054132|ref|XP_002298107.1| peptide deformylase [Populus trichocarpa]
 gi|222845365|gb|EEE82912.1| peptide deformylase [Populus trichocarpa]
          Length = 299

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +R ++  +I S+ I  +ID+M++VM    G+GLAA QIG+  R++V+
Sbjct: 112 DIVKAGDPVLHEPAREVDPKEIGSERIQKIIDDMVKVMRMAPGVGLAAPQIGIPLRIIVL 171

Query: 62  DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +         P              +V +NPK+   S+  + + EGCLS+  +RA V+R 
Sbjct: 172 EDTAEYIGYAPKNETKAQDRRPFDLLVIVNPKLKKKSNRTAFFFEGCLSVDGFRAIVERH 231

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V  +  + Q   + A G  A  LQHE DHL G L++D +  
Sbjct: 232 LDVEVIGLSRDGQPIKVDASGWQARILQHECDHLEGTLYVDKMVP 276


>gi|237798881|ref|ZP_04587342.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021735|gb|EGI01792.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 179

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L RV+ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1   MIRNILKMGDERLLRVAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59  VVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +       A      + +NP I     +     EGCLS+P  R  V R   I   
Sbjct: 61  VIFGFERSERYPEAEAVPQTILLNPLITPLGPNMEEGWEGCLSVPGLRGMVDRYQSIRYE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D +       A G  A  +QHE DHL G L+   ++   +      M
Sbjct: 121 GFDPDGLPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFMDVM 169


>gi|172038579|ref|YP_001805080.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142]
 gi|171700033|gb|ACB53014.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142]
          Length = 171

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 9/159 (5%)

Query: 2   VKKP---LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           + KP   +    +PILR+ ++ +  I +  +   ID +L +     G+G+AA Q+   YR
Sbjct: 1   MIKPNLKIAQVGNPILRQQAQCVTDITDDKLQEFIDTLLTIAMDAKGVGIAAPQVSQSYR 60

Query: 58  LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           L ++    +    +     P V INP++++ S +     EGCLS+P  R  V R   ITV
Sbjct: 61  LFMVCSHPNPRYPDAPLMEPTVMINPRLVSHSKEMVKGWEGCLSVPRIRGLVPRYQTITV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            Y+D   Q         +    QHELDHLNGILFID + 
Sbjct: 121 EYLDRYGQLHQQELTDFIGRIFQHELDHLNGILFIDRID 159


>gi|153875918|ref|ZP_02003500.1| Polypeptide deformylase [Beggiatoa sp. PS]
 gi|152067618|gb|EDN66500.1| Polypeptide deformylase [Beggiatoa sp. PS]
          Length = 174

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59
           M    L+I+PD  L++VS  +   +  +   + ++ E M +  G +G+AA Q+G   R+V
Sbjct: 1   MALLDLLIYPDVRLKQVSASVRVFDEKLHAFLTDLEETMRAGLGSVGIAAPQVGYFERIV 60

Query: 60  VIDLQDHAHRKNPMVFI--NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +ID+      K+    I  NP+I  +   F V +EGC+S+PDY  +V R+  I +  +D 
Sbjct: 61  IIDVSSKPKIKHHGHLILVNPEITQWKG-FEVGREGCMSVPDYTGNVIRAKKIHLMALDE 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           N   Q    +G  A  +QHE+DHL+G+LF+D L   + D+  ++
Sbjct: 120 NGVQQEYDMEGYEARAVQHEIDHLDGLLFLDRLVSRRYDLFQRR 163


>gi|261749262|ref|YP_003256947.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497354|gb|ACX83804.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 180

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 7/157 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +  P+V++ +PILR+    I+  +    I  L+ +M E ++   GIGLAA QIG   RL 
Sbjct: 1   MILPIVVYGNPILRKKCIDIDIYSCRKKIQELVKDMFETIHKVKGIGLAAPQIGKNIRLF 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +++                VFIN +I+        + EGCLSIP     VKR + +++ Y
Sbjct: 61  IVETPYLLENGKDIDNYKEVFINARILKIHGKEYEFNEGCLSIPGIMGYVKRKSHVSIEY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            D N + +     G+ A  +QHE DH+ G LFID+ S
Sbjct: 121 YDHNWKKKKETLKGICARVIQHEYDHMEGKLFIDYFS 157


>gi|332295842|ref|YP_004437765.1| Peptide deformylase [Thermodesulfobium narugense DSM 14796]
 gi|332178945|gb|AEE14634.1| Peptide deformylase [Thermodesulfobium narugense DSM 14796]
          Length = 165

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 8/167 (4%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           K+ ++  P+ +LR+ S P+ + + ++ +L++ M  +M S +G+GLAA Q+G L RL +  
Sbjct: 4   KRKIITHPNSLLRKRSLPVLQFDKNLESLVEEMEYLMISNNGVGLAAPQVGELSRLFIYK 63

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + D     N  V INP+II       V  EGCLS+P     V+R+  + V+  +      
Sbjct: 64  IDD-----NLQVVINPEIIEK-VGSEVDVEGCLSVPGVFGPVERAFKVIVQAQNIYGDTI 117

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK--RDMITKKMSKLVQ 167
           I+  +G  A  +QHE DHLNG LFID    L+   +   K+  KL +
Sbjct: 118 ILNKEGYEARVIQHEFDHLNGDLFIDKAEYLETAEERAKKQKEKLEK 164


>gi|153939969|ref|YP_001391592.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|152935865|gb|ABS41363.1| peptide deformylase [Clostridium botulinum F str. Langeland]
 gi|295319620|gb|ADF99997.1| peptide deformylase [Clostridium botulinum F str. 230613]
          Length = 150

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +  D ILR+ S+ +E ++  I  ++++M + MY+T +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLVDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|319793878|ref|YP_004155518.1| peptide deformylase [Variovorax paradoxus EPS]
 gi|315596341|gb|ADU37407.1| peptide deformylase [Variovorax paradoxus EPS]
          Length = 179

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R+++P+   +  ++  L+ +M E M++ +G GLAA QIGV  +LV
Sbjct: 1   MAIREILKMGDPRLLRIAQPVAAFDTDELHLLVRDMFETMHAVNGAGLAAPQIGVDQQLV 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      V +NP I    +D     EGCLS+P  R  V R A I   
Sbjct: 61  IFGTDIVNPRYPDAPPVPRTVLLNPVITPIGEDEEEGWEGCLSVPGLRGVVPRFANIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
             D         A G  A  +QHE+DHL G L+   +    R   T+ +
Sbjct: 121 GFDPYGDPIDRVASGFHARVVQHEVDHLLGKLYPMRVRDFSRFGYTEVL 169


>gi|163853348|ref|YP_001641391.1| peptide deformylase [Methylobacterium extorquens PA1]
 gi|163664953|gb|ABY32320.1| formylmethionine deformylase [Methylobacterium extorquens PA1]
          Length = 176

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +PL+ +PD  L R + P+      +       L  ++L+ + +   +GL A+ IG  
Sbjct: 1   MPIRPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRP 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R+VVI LQ         V+++P +   S + + + EG +S+P     V+R A + VRY 
Sbjct: 61  ERVVVIRLQPDEPHA---VYVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D +       A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL
Sbjct: 118 DLDGAEHEEKAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167


>gi|333027512|ref|ZP_08455576.1| putative peptide deformylase [Streptomyces sp. Tu6071]
 gi|332747364|gb|EGJ77805.1| putative peptide deformylase [Streptomyces sp. Tu6071]
          Length = 213

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 10  PDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            + +L R           ++  L+ +M   MY  +G GLAA Q+ V  RL V D  D   
Sbjct: 31  GEEVLARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEG 90

Query: 69  RKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            ++    +NP I   +         EGCLS+P  + ++ R+    VR +D + +   I  
Sbjct: 91  ARHVGHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEG 150

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            G  A CLQHE DHLNGIL++D L+R  R  +   M++
Sbjct: 151 TGYFARCLQHETDHLNGILYVDRLARRARRTVLTDMAE 188


>gi|94986391|ref|YP_605755.1| peptide deformylase [Deinococcus geothermalis DSM 11300]
 gi|94556672|gb|ABF46586.1| Peptide deformylase [Deinococcus geothermalis DSM 11300]
          Length = 216

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 24/190 (12%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIG 53
             P+ ++ DP+LRR +RP++  ++          +  + + MLE M+   G+GLAA Q+G
Sbjct: 7   VYPIRLYGDPVLRRKARPLQATDTLTVPGFGPQSVREVANTMLETMFEARGVGLAAPQVG 66

Query: 54  VLYRLVVI-------------DLQDHAHRKNPMVFINPKIITFSDDFS-VYQEGCLSIPD 99
           +  R+ V              D+   +      V +NP +          YQEGCLSIP 
Sbjct: 67  LPVRMFVAVEYEDDEEEQEGRDVPLKSRVLREFVMLNPVLTVIDKKKDRSYQEGCLSIPG 126

Query: 100 YRAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              + V R+  + VRY D + Q + + AD  LA   QHE DHL+G+ F+D L     +  
Sbjct: 127 IYEEGVARARAVQVRYTDLDGQERTLEADDYLARVFQHETDHLDGVFFLDRLPPEVTEDH 186

Query: 159 TKKMSKLVQL 168
            K+++ + + 
Sbjct: 187 RKELAAMQRQ 196


>gi|168180757|ref|ZP_02615421.1| peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|182668503|gb|EDT80482.1| peptide deformylase [Clostridium botulinum NCTC 2916]
          Length = 150

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+T +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCL+IP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLNIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|84622632|ref|YP_450004.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188578324|ref|YP_001915253.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|242556373|pdb|3DLD|A Chain A, Crystal Structure Of Peptide Deformylase, Xoo1075, From
           Xanthomonas Oryzae Pv. Oryzae Kacc10331
 gi|84366572|dbj|BAE67730.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522776|gb|ACD60721.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 171

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+  +  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +       A         N +I   SD+     EGCLSIP  RA + R  +I  R  
Sbjct: 61  FGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158


>gi|295395930|ref|ZP_06806115.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971203|gb|EFG47093.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 164

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +  F DP+LR V  P+ +     + L  ++L+         +AA QIGV  R   
Sbjct: 1   MANRTIRTFGDPVLRTVCEPVTQFGESTVALAQDLLDTAAPEGRAAVAAPQIGVAVRAFG 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            DL          V  NP+++T   +     EGCLS+P       R  F TV  +D + Q
Sbjct: 61  YDLHGRRG-----VVFNPEVVTR-GERRDIDEGCLSVPGLFFPTPRYEFATVHGVDEHGQ 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  DG+ A  LQHE DHLNG++++  L   +R    +++ +
Sbjct: 115 PIEVSGDGVFAQMLQHETDHLNGVVYVQTLPSERRKEAMRQIRQ 158


>gi|306520944|ref|ZP_07407291.1| peptide deformylase 2 [Clostridium difficile QCD-32g58]
          Length = 155

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 50/128 (39%), Positives = 80/128 (62%), Gaps = 6/128 (4%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84
           +  I+ L+D+M E MY  DG+GLAA Q+G+L R+VVID+ +       +  INP+II  S
Sbjct: 34  DEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVVIDIGE-----ELIELINPEIIETS 88

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
            +  + +EGCLS+     +V+R  ++ VR ++ N +   +  + LLA    HE+DHL+GI
Sbjct: 89  GE-QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGETIELEGEELLARAFCHEIDHLDGI 147

Query: 145 LFIDHLSR 152
           LF+D + +
Sbjct: 148 LFVDKIEK 155


>gi|268611639|ref|ZP_06145366.1| peptide deformylase [Ruminococcus flavefaciens FD-1]
          Length = 153

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 6/148 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++   D  L +V +P++K +  +  L+D+M E +    G+GLAA QIG+  R+ +
Sbjct: 1   MALRKILTDKDESLHKVCKPVDKFDEKLAVLLDDMHETLDKAQGLGLAAPQIGLCRRIFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + L++ +        INP++        V QEGCLS P+    V R     ++  D N  
Sbjct: 61  MHLEEGS-----FECINPEVTQKEGKQRV-QEGCLSCPNVWGYVTRPMKCHLKAQDRNGN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 +GL A C  HE DHL+G +F +
Sbjct: 115 WFERDFEGLGAQCTCHENDHLDGHVFTE 142


>gi|37521298|ref|NP_924675.1| peptide deformylase [Gloeobacter violaceus PCC 7421]
 gi|35212295|dbj|BAC89670.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
          Length = 275

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 17/166 (10%)

Query: 3   KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
              +V   DP+LR  ++P+   E  +  I  LI  M E M    G+GLAA Q+GV  +LV
Sbjct: 93  VYEIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLV 152

Query: 60  VI-DLQDHAHR----------KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           VI D  ++  R          + P+   V INP +    ++ +V+ EGCLSIP Y+  V 
Sbjct: 153 VIEDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVA 212

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R+  + V  +D  A   +I A G  A  LQHE+DHLNG+L +D + 
Sbjct: 213 RARVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMD 258


>gi|226357360|ref|YP_002787100.1| peptide deformylase [Deinococcus deserti VCD115]
 gi|226319350|gb|ACO47346.1| putative peptide deformylase (polypeptide deformylase) (PDF)
           [Deinococcus deserti VCD115]
          Length = 220

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 24/189 (12%)

Query: 3   KKPLVIFPDPILRRVSRP--------IEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIG 53
             P+ ++ DP+LRR +RP        +   +   +  + D MLE M+   G+GLAA Q+G
Sbjct: 10  IYPIRLYGDPVLRRKARPLQHTDMLTVPGFDPQTVRQVADTMLETMFEARGVGLAAPQVG 69

Query: 54  VLYRLVVI-------------DLQDHAHRKNPMVFINPKIITFSDDFS-VYQEGCLSIPD 99
           +  R+ V              D    +      V +NP +          YQEGCLSIP 
Sbjct: 70  LPVRMFVAVEYEDDEEENEGQDTPLKSRVLREFVMLNPVLSVLDKKKDRSYQEGCLSIPG 129

Query: 100 YRAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              + V R+  I VRY D +   + I AD  LA   QHE DHL+GI F+D L     +  
Sbjct: 130 IYEEGVSRARAIQVRYTDLDGAQRTIQADDYLARVFQHEADHLDGIFFLDRLPPEVTEDY 189

Query: 159 TKKMSKLVQ 167
            +++  + +
Sbjct: 190 RRELLAMQR 198


>gi|120611762|ref|YP_971440.1| peptide deformylase [Acidovorax citrulli AAC00-1]
 gi|120590226|gb|ABM33666.1| peptide deformylase [Acidovorax citrulli AAC00-1]
          Length = 200

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 7/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   D  L R +RP+ +     ++ L+ +M + M + +G GLAA QIGV  ++V
Sbjct: 22  MAIHDILKMGDERLLRTARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVV 81

Query: 60  VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +   ++   R        P V +NP+I     +     EGCLS+P  R  V R + I  R
Sbjct: 82  IFGSEERNPRYPDRPLVPPTVLVNPRITPLGGEEEEDWEGCLSVPGLRGVVPRWSRIHYR 141

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D +        +G  A  +QHE DHL G L+   +    R
Sbjct: 142 GFDEHGAPIDRTVEGFHARVVQHECDHLVGKLYPMRIRDFSR 183


>gi|166713383|ref|ZP_02244590.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 171

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+  +  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +       A         N +I   S++     EGCLSIP  RA + R  +I  R  
Sbjct: 61  FGFEASERYPEAPAVPLTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +       A+G  A  +QHE DHL G L+   +   
Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158


>gi|78101135|pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
           Precipitant
 gi|78101136|pdb|1ZXZ|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
           Precipitant
 gi|78101137|pdb|1ZY0|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-6000
 gi|78101138|pdb|1ZY0|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a); Crystals Grown In Peg-6000
 gi|78101139|pdb|1ZY1|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
 gi|78101140|pdb|1ZY1|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
           Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
          Length = 197

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 17/169 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +V   DP+L   +R ++  +I S+ I  +ID+M++VM    G+GLAA QIGV  R
Sbjct: 1   MDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLR 60

Query: 58  LVVID--------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           ++V++              L       + MV +NP +   S+  +++ EGCLS+  +RA 
Sbjct: 61  IIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAA 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+R   + V   D   +   + A G  A  LQHE DHL+G L++D +  
Sbjct: 121 VERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 169


>gi|254518787|ref|ZP_05130843.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
 gi|226912536|gb|EEH97737.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
          Length = 150

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +F   ILR+ S+ +  ++  I  ++++M + MY+T +G GLAA Q+G+L RLV
Sbjct: 1   MALRQIRLFGGEILRKRSKEVLVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NP+II   +      EGCL+ P+    +KR A +T++ ++   
Sbjct: 61  VIDMG-----QGLIKLVNPRIIKK-EGIQEVIEGCLNYPNRWGKLKRPAKVTIQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL+GILF D ++ 
Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLDGILFTDFVTE 147


>gi|221066139|ref|ZP_03542244.1| peptide deformylase [Comamonas testosteroni KF-1]
 gi|220711162|gb|EED66530.1| peptide deformylase [Comamonas testosteroni KF-1]
          Length = 179

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 7/166 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R+++P+ + ++D ++L+   L   M++ +G GLAA QIG   ++V
Sbjct: 1   MTVRAILKMGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMV 60

Query: 60  VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V    +   R          V INP I    ++  +  EGCLS+P  RA V R + +   
Sbjct: 61  VFGSGEPNPRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWSKVRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D          DG  A  +QHE DHL G L+   +    +   T
Sbjct: 121 GFDLYGDPIDRTVDGFHARVVQHECDHLWGKLYPMRVRDFSQFGFT 166


>gi|308234578|ref|ZP_07665315.1| peptide deformylase [Atopobium vaginae DSM 15829]
          Length = 183

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 92/170 (54%), Gaps = 8/170 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             K +V  P  IL+ V  P+++I  +I +L  +M EVMY+TDG GLAA QIG   RLVVI
Sbjct: 6   AYKEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVI 65

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +     RK P V +NPKI+   +      EGCLS P     VKR + +    ++ +  
Sbjct: 66  DCEWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGD 125

Query: 121 HQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A G LLA CLQHE DHL G+   DHL       + KKM KL + +
Sbjct: 126 LIRYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 169


>gi|302518710|ref|ZP_07271052.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|302427605|gb|EFK99420.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 213

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 10  PDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68
            + IL R           ++  L+ +M   MY  +G GLAA Q+ V  RL V D  D   
Sbjct: 31  GEEILARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFVYDCFDDEG 90

Query: 69  RKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
            ++    +NP I   +         EGCLS+P  + ++ R+    VR +D + +   I  
Sbjct: 91  ARHVGHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLDGRPVTIEG 150

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            G  A CLQHE DHLNGIL++D L+R  R  +   M++
Sbjct: 151 TGYFARCLQHETDHLNGILYVDRLARRARRTVLTDMAE 188


>gi|148273059|ref|YP_001222620.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830989|emb|CAN01934.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 163

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + +F DP+L+ VS  I +I+  +  L++++L+ +      G+AA QIGV  R   
Sbjct: 1   MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGVNLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +NP I     +  +  EGCLS+P       R     +  +D   +
Sbjct: 61  YNVGPAFGY-----VLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVITGIDLEGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I   G+LA   QHE+DHL+G++++D L + +R    K++ +
Sbjct: 116 PVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159


>gi|126649676|ref|ZP_01721912.1| peptide deformylase [Bacillus sp. B14905]
 gi|126593395|gb|EAZ87340.1| peptide deformylase [Bacillus sp. B14905]
          Length = 176

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 90/165 (54%), Gaps = 7/165 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P  +L      + +IN +++ L+D++ + M   DG+G+AA QI +  R+ +
Sbjct: 13  MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      ++ +  +NP +I   D   +  EGCLS P    +V+R +++ +   D   +
Sbjct: 73  VEL---GEERDILEMVNPTVIET-DGAEIDIEGCLSFPGLYGEVERPSYVKIEACDREGR 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              + A G  A  + HE+DHL+G+LF    S++KR +  +++ ++
Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFD---SKIKRVITAEELEEM 170


>gi|160900287|ref|YP_001565869.1| peptide deformylase [Delftia acidovorans SPH-1]
 gi|160365871|gb|ABX37484.1| peptide deformylase [Delftia acidovorans SPH-1]
          Length = 179

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 7/166 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV++P+ + ++D ++L+ + L   M++ +G GLAA QIGV  ++V
Sbjct: 1   MTVRTILKMGDPRLLRVAQPVTEFDTDELHLLLSDLLDTMHAANGAGLAAPQIGVDLQMV 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V            A      V INP I    +D  +  EGCLS+P  R  V R   I   
Sbjct: 61  VFGSGLPNPRYPDAPVVPRTVLINPVITPMGEDEHLDWEGCLSVPGMRGMVPRWNHIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             D          DG  A  +QHE DHL G L+   +    +   T
Sbjct: 121 GFDVFGDAIDRTVDGFHARVVQHECDHLWGKLYPMRMRDFSQFGFT 166


>gi|326402613|ref|YP_004282694.1| peptide deformylase [Acidiphilium multivorum AIU301]
 gi|325049474|dbj|BAJ79812.1| peptide deformylase [Acidiphilium multivorum AIU301]
          Length = 184

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 11/178 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    L     P+L   + P+ +    +I  L+ +M E +    G+GLAA Q+ V  RL 
Sbjct: 1   MALLKLARLGHPVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLF 60

Query: 60  VIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +  + +       H   +     INP+++    +     EGCLSIP   A V R+A +T+
Sbjct: 61  IYRVPESRAGGGEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           R MD         A G  A  +QHE DHL+GIL+   L   +         ++ + RD
Sbjct: 121 RAMDATGAPFSREAAGFHARVIQHEADHLDGILYPQRLRDPRLMGFN---EEVARFRD 175


>gi|328944367|ref|ZP_08241830.1| peptide deformylase [Atopobium vaginae DSM 15829]
 gi|327491082|gb|EGF22858.1| peptide deformylase [Atopobium vaginae DSM 15829]
          Length = 187

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 92/170 (54%), Gaps = 8/170 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             K +V  P  IL+ V  P+++I  +I +L  +M EVMY+TDG GLAA QIG   RLVVI
Sbjct: 10  AYKEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVI 69

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +     RK P V +NPKI+   +      EGCLS P     VKR + +    ++ +  
Sbjct: 70  DCEWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGD 129

Query: 121 HQIIYADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A G LLA CLQHE DHL G+   DHL       + KKM KL + +
Sbjct: 130 LIRYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 173


>gi|206560457|ref|YP_002231221.1| peptide deformylase [Burkholderia cenocepacia J2315]
 gi|198036498|emb|CAR52395.1| putative deformylase [Burkholderia cenocepacia J2315]
          Length = 177

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V++P+E+ +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEVAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INPKI     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGNNNRYPDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   Q     A+G  A  +QHE DHL G L+   ++   R   T+ +
Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167


>gi|296393247|ref|YP_003658131.1| peptide deformylase [Segniliparus rotundus DSM 44985]
 gi|296180394|gb|ADG97300.1| peptide deformylase [Segniliparus rotundus DSM 44985]
          Length = 198

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  DP+L R +  +          ++++L+++M + + ++ G+GLAA QIGV 
Sbjct: 1   MTVLPIRITGDPVLHRPTELVRLTAEGAAPPEVVSLLEDMYDTLKASHGVGLAATQIGVG 60

Query: 56  YRLVVIDLQDHAHRKN---PMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRS 107
            RL V D  D    K        INP + T +      D    +EGCLS+P  R    R+
Sbjct: 61  LRLFVYDCPDDTSGKRVSRKGEIINPVLQTSALPEGMPDEDEDEEGCLSVPGLRFPTGRA 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +     +D   +   I  +GL A  LQHE+ HL+G L++D L
Sbjct: 121 VWAKATGVDRTGKPVEIEGEGLFARMLQHEVGHLDGKLYVDML 163


>gi|315640287|ref|ZP_07895404.1| peptide deformylase [Enterococcus italicus DSM 15952]
 gi|315483949|gb|EFU74428.1| peptide deformylase [Enterococcus italicus DSM 15952]
          Length = 163

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/149 (38%), Positives = 92/149 (61%), Gaps = 5/149 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++ P++I PD  LR+ ++ I+++  +++ L+D+M E M + DG+G+AA QIG   ++ V+
Sbjct: 1   MRYPIIIQPDEQLRKPNQEIQELTDELVYLLDDMYETMLAHDGVGIAAPQIGKNLQMAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ ++         INP+II      SV+ EGCLSIP     V+R+  ITVRY D     
Sbjct: 61  EVDENDRFD----LINPQIIDRKG-KSVFVEGCLSIPHVFGTVERAEEITVRYYDREGDE 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             + A G LA  +QHE+DHLNG+LF D +
Sbjct: 116 MEVTAYGYLARAIQHEIDHLNGVLFTDKV 144


>gi|254247880|ref|ZP_04941201.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184]
 gi|124872656|gb|EAY64372.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184]
          Length = 177

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  +++P+E+ +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INPK+     +     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGNNNRYPDAPPVPETVLINPKVEYLPPEMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   Q     A+G  A  +QHE DHL G L+   ++   R   T+ +
Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167


>gi|54309245|ref|YP_130265.1| polypeptide deformylase [Photobacterium profundum SS9]
 gi|46913677|emb|CAG20463.1| hypothetical polypeptide deformylase [Photobacterium profundum SS9]
          Length = 175

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               ++   +P+LR  +  +  +  +    L+ ++ ++M S  G+G+AA Q+G   R  +
Sbjct: 3   APLEIIQLGNPLLRVPAEALSAVQIETALPLLKSLEQIMLSHQGVGIAAPQVGQPLRAFI 62

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +     D   HA    P + INP+++  S++     EGCLSIP  RA V R   I VRY+
Sbjct: 63  VASRPNDRYPHAPLMEPTIMINPELLWQSEEMEKDWEGCLSIPGIRAKVNRYTHIRVRYL 122

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           + +         G +A   QHELDHLNGI+F+D   +L
Sbjct: 123 NASGDVIETEFTGFIARIFQHELDHLNGIVFLDRADKL 160


>gi|302540288|ref|ZP_07292630.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302457906|gb|EFL20999.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 225

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)

Query: 5   PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V    P+LR+ + P +    +  +  L+  M E M++  G+GLAA QIGV  RL VI+
Sbjct: 21  PIVSAGLPVLRQAALPYDGQLPDGQLDRLLRAMRETMHNAPGVGLAAPQIGVPLRLAVIE 80

Query: 63  ---------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                     +       P  V +NP      D  + + EGCLS+P ++A V R   I +
Sbjct: 81  DPAEVATEVREARGRVPQPYRVLVNPSYEPVGDARAAFFEGCLSVPGWQAVVSRPERIRL 140

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           R  D   +       G  A  +QHE DHL+G+L++D
Sbjct: 141 RGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176


>gi|83592380|ref|YP_426132.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
 gi|83575294|gb|ABC21845.1| Peptide deformylase [Rhodospirillum rubrum ATCC 11170]
          Length = 169

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 7/166 (4%)

Query: 12  PILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65
           P+L  ++RP+E   +  I  L+ +M+E +  + G+GLAA Q+ V  R+++  +      +
Sbjct: 2   PVLAGIARPVEDPTDPKIHRLVADMIETLADSGGVGLAAPQVHVPLRVMIFHVPANRSTE 61

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                   V INP++    ++     EGCLS+P     V R   +  R +D + +     
Sbjct: 62  AEGAVPLTVLINPQLTPLGEEMVEDWEGCLSLPGLTGLVPRYRSLRYRGVDLDGREVERE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLRD 170
           A    A  +QHE DHL+G+L+   L    +    +++ K L   R+
Sbjct: 122 ARDFHARVVQHEYDHLDGVLYPRRLRDPSQFGFVEEIRKALAANRE 167


>gi|113478377|ref|YP_724438.1| peptide deformylase [Trichodesmium erythraeum IMS101]
 gi|110169425|gb|ABG53965.1| peptide deformylase [Trichodesmium erythraeum IMS101]
          Length = 177

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +    + ILR  ++ +  I + ++  LIDN++  +  T+G+G+AA Q+ +   L 
Sbjct: 1   MEVLQVAQLGNKILRYQAQTVNNILDQNVQQLIDNLIFTVIETNGVGIAAPQVSISDCLF 60

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +I  + +    N     P+  INP++I+ S+D     EGCLSIP  R  V R   I V Y
Sbjct: 61  IIASRPNIRYPNAPKMEPIAMINPRLISHSEDRVKGWEGCLSIPGIRGLVPRYRVINVEY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLRD 170
            +   + +       +A   QHE DHL G++F+D +      +   +  K ++QLR+
Sbjct: 121 TNREGKLERQELTDFVARIFQHEYDHLEGLVFLDRVESTTDLITEDEYQKQIIQLRN 177


>gi|21244235|ref|NP_643817.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
 gi|25452915|sp|Q8PGV2|DEF1_XANAC RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|21109877|gb|AAM38353.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 171

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIREIIRMGDKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S+D     EGCLSIP  RA + R  FI  R  
Sbjct: 61  FGFDASERYPEAPAVPRTALANAQIEPLSEDMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             +       A+G  A  +QHE D+L G L+   +         
Sbjct: 121 APDGSPIERDAEGFHARVVQHEYDNLVGRLYPSRIENFDTFGFE 164


>gi|291288165|ref|YP_003504981.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885325|gb|ADD69025.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 167

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 98/168 (58%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + ++++PD  L+ ++  +EK++     ++ ++++ M  +    G+AA QIG   R+V
Sbjct: 1   MAVREVLVYPDTRLKEMAEDVEKLDDHAKQVVRDLIDTMEESGHSTGIAATQIGEKLRIV 60

Query: 60  VIDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           V D   +   +N    +V INP+I+ +      ++EGC+S+PDY  +V R+  I ++Y D
Sbjct: 61  VADASKNKKCENNHGRLVLINPEILKWEGMLQ-FREGCMSVPDYTGNVNRARKILIKYND 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            N + ++I A+G  A  LQHE DHL+G LFID +   + D+  +K  K
Sbjct: 120 ENFEEKVIEAEGFEAVLLQHETDHLDGTLFIDRVISKRTDLFRRKKYK 167


>gi|260906787|ref|ZP_05915109.1| polypeptide deformylase [Brevibacterium linens BL2]
          Length = 168

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M ++ + ++ DP+LR    P+   +  +  L  ++++         +AA QIGV  R   
Sbjct: 1   MAERDIRLWGDPVLRSPCAPVTVFDEGLRALAQDLVDTSLPEGRAAVAAPQIGVGVRAFG 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            DL            INP+++    +    +EGCLS+P       R  F  VR +D    
Sbjct: 61  YDLDGRTGY-----VINPEVVEVGGELRDIEEGCLSVPGLFFPTPRYEFARVRGVDAENS 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I    + A  LQHE+ HL+G +++  L + +R    K + 
Sbjct: 116 PVEISGTEVFAQMLQHEVAHLDGQVYVQTLPKERRREAMKAIR 158


>gi|239815924|ref|YP_002944834.1| peptide deformylase [Variovorax paradoxus S110]
 gi|239802501|gb|ACS19568.1| peptide deformylase [Variovorax paradoxus S110]
          Length = 179

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R+++P+   +  ++  L+ +M E M + +G GLAA QIGV  +LV
Sbjct: 1   MAIREILKMGDPRLLRIAQPVAAFDTDELHLLVRDMFETMLAVNGAGLAAPQIGVDQQLV 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +            A      V +NP I    D+     EGCLS+P  R  V R A I   
Sbjct: 61  IFGTDVVNPRYPDAPPVPRTVLLNPVITPIGDEEEEGWEGCLSVPGLRGVVPRFANIRYT 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D         A G  A  +QHE+DHL G L+   +    R
Sbjct: 121 GFDPYGDPIDRVASGFHARVVQHEVDHLLGKLYPMRVRDFSR 162


>gi|39930960|sp|Q7NJV3|DEF1_GLOVI RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
          Length = 227

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 17/166 (10%)

Query: 3   KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
              +V   DP+LR  ++P+   E  +  I  LI  M E M    G+GLAA Q+GV  +LV
Sbjct: 45  VYEIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLV 104

Query: 60  VI-DLQDHAHR----------KNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           VI D  ++  R          + P+   V INP +    ++ +V+ EGCLSIP Y+  V 
Sbjct: 105 VIEDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVA 164

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R+  + V  +D  A   +I A G  A  LQHE+DHLNG+L +D + 
Sbjct: 165 RARVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMD 210


>gi|262200670|ref|YP_003271878.1| peptide deformylase [Gordonia bronchialis DSM 43247]
 gi|262084017|gb|ACY19985.1| peptide deformylase [Gordonia bronchialis DSM 43247]
          Length = 200

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M   P+ I  +P+L R + P+   ++     +++ L+D+M + M +  G+GLAA Q+GV 
Sbjct: 1   MAILPICIIGEPVLHRRTEPVPLDDAGKPSAEVIALLDDMYDTMDAAHGVGLAANQVGVG 60

Query: 56  YRLVVIDLQDHAH---RKNPMVFINP-----KIITFSDDFSVYQEGCLSIPDYRADVKRS 107
            R+ V D  +       +     INP     +I     D     EGCLS+P  +    R+
Sbjct: 61  LRMFVYDCPEGERYVPERRRGEVINPVLETSEIPETMPDPDDNDEGCLSVPGEQFPTGRA 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            +  V  +D      ++   G  A  LQHE  HL+G L++D L
Sbjct: 121 DWARVTGVDRTGAEVVVEGTGFFARMLQHETGHLDGFLYVDVL 163


>gi|323464693|gb|ADX76846.1| peptide deformylase 1 [Staphylococcus pseudintermedius ED99]
          Length = 161

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +     PILR+ + P+   ++ + +LI ++ + +Y  +G  LAA QIGV  R+ ++
Sbjct: 1   MIRKIKTHMHPILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     +   +  INP++I  SD+ +   EGCLS+P    +V RS  ITVR  D N   
Sbjct: 61  DM----EQDGLLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNE 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             + A   +A  + H +D+LNGILF+D + R 
Sbjct: 117 VEMTAYDDIARMILHVIDNLNGILFVDMMDRE 148


>gi|116783457|gb|ABK22950.1| unknown [Picea sitchensis]
          Length = 305

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V   DP+L   +  +  ++I S+ I  +ID+M+ VM++  G GLAA Q+GV  +++V+
Sbjct: 118 EIVQAGDPVLHECAAEVAVDEIGSERIQKIIDDMIAVMWNAPGCGLAAPQLGVPLQIIVL 177

Query: 62  DLQDH-----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           + ++            A  ++P   ++ INPK+ +     + + EGCLS+  +R  V+R 
Sbjct: 178 EDKEEYIRFTLKEETEAQERHPFDLLIIINPKLKSKGIKTAKFFEGCLSVNGFRGLVERH 237

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + V     +     I A G  A  LQHE DHL G+L++D L  
Sbjct: 238 LEVEVTGFGRDGLPIKINATGWKARILQHECDHLAGLLYVDKLIP 282


>gi|169827062|ref|YP_001697220.1| peptide deformylase [Lysinibacillus sphaericus C3-41]
 gi|168991550|gb|ACA39090.1| Peptide deformylase 1 [Lysinibacillus sphaericus C3-41]
          Length = 176

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 82/153 (53%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P  +L      + +IN +++ L+D++ + M   DG+G+AA QI +  R+ +
Sbjct: 13  MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      ++ +  INP +I   D   +  EGCLS P    +V+R +++ +   D   +
Sbjct: 73  VEL---GEERDILEMINPTVIET-DGAEIDIEGCLSFPGLYGEVERPSYVKIEACDREGR 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A G  A  + HE+DHL+G+LF   + R+
Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFDSKIQRV 161


>gi|299535919|ref|ZP_07049239.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
 gi|298728671|gb|EFI69226.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
          Length = 164

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P  +L      + +IN +I+ L+D++ + M   DG+G+AA QI V  R+ +
Sbjct: 1   MAIKKVIENPAKVLSTPCAEVTEINDEIITLLDDLYDTMVEYDGVGIAAPQIDVGLRVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      ++ +  INP ++   D   V  EGCLS P    +V+R +++ +   D   +
Sbjct: 61  VEL---GEERDILEMINPTVVET-DGAEVDIEGCLSFPGLYGEVERPSYVKIEACDREGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A G  A  + HE+DHL+G+LF   + R+
Sbjct: 117 VYELEAGGFDARAILHEIDHLDGVLFDSKIKRI 149


>gi|111114886|ref|YP_709504.1| peptide deformylase [Borrelia afzelii PKo]
 gi|110890160|gb|ABH01328.1| polypeptide deformylase [Borrelia afzelii PKo]
          Length = 165

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 3/156 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V +P+ +LR  ++ I+ I++ I +    M+E+M  + G+GLAA Q+G+   + V+   
Sbjct: 2   EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSIFVVREN 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             A    P+VFINP I   S + + Y+EGCLSIP    D+ R   I + + D N +   I
Sbjct: 62  KMAK---PLVFINPVITETSYELNSYKEGCLSIPGVYYDLMRPKGIVINFYDENEKSFTI 118

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                LA  +QHE+DHLNG+LFID+     ++ + K
Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEERIKNKLLK 154


>gi|319892209|ref|YP_004149084.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161905|gb|ADV05448.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
          Length = 161

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +     PILR+ + P+   ++ + +LI ++ + +Y  +G  LAA QIGV  R+ ++
Sbjct: 1   MIRKIKTHMHPILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     +   +  INP++I  SD+ +   EGCLS+P    +V RS  ITVR  D N   
Sbjct: 61  DM----EQDGLLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNE 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             + A   +A  + H +D+LNGILF+D + R 
Sbjct: 117 VEMTAYDDIARMILHVIDNLNGILFVDMIDRE 148


>gi|326316988|ref|YP_004234660.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373824|gb|ADX46093.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 179

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 7/162 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   D  L R++RP+ +     ++ L+ +M + M + +G GLAA QIGV  ++V
Sbjct: 1   MAIHDILKMGDERLLRIARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVV 60

Query: 60  VIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +    +   R        P V +NP+I    D+     EGCLS+P  R  V R + I   
Sbjct: 61  IFGSNERNPRYPDRPLVPPTVLVNPRITPLGDEEEEDWEGCLSVPGLRGVVPRWSRIHYA 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D +        +G  A  +QHE DHL G L+   +    R
Sbjct: 121 GFDEHGTPIDRTVEGFHARVVQHECDHLVGKLYPMRIRDFSR 162


>gi|301167996|emb|CBW27582.1| peptide deformylase [Bacteriovorax marinus SJ]
          Length = 179

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 9/174 (5%)

Query: 1   MVKKPLVIFPDPILRRVS--RPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  K L    +P+LR+V+   P E+I     + LI ++ + M    GIG+AA QIGV Y+
Sbjct: 1   MAIKDLTKMGNPVLRKVALEYPSEEIGGEKFIKLIKDLEDTMKENGGIGIAAPQIGVSYQ 60

Query: 58  LVVIDLQDHAHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           + +I L D++ R       +  + +NP I         + EGCLS+P  R  V R   + 
Sbjct: 61  VAIIQLPDNSERYPDIAKSDQYIVVNPTIEVLDQTEQGFWEGCLSVPGLRGFVHRPRKVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           + +++  AQ + +  +G LAT  QHELDHL G L+ID +  L      ++  + 
Sbjct: 121 ITFLNDRAQQEELILEGFLATVFQHELDHLFGKLYIDRIKDLTLLSYEEEFRQF 174


>gi|107028797|ref|YP_625892.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116690044|ref|YP_835667.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|170733379|ref|YP_001765326.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
 gi|105897961|gb|ABF80919.1| Peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116648133|gb|ABK08774.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|169816621|gb|ACA91204.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
          Length = 177

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  +++P+E+ +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGNNNRYPDAPPVPETVLINPKVEYLPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   Q     A+G  A  +QHE DHL G L+   ++   R   T+ +
Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167


>gi|108759554|ref|YP_631592.1| peptide deformylase [Myxococcus xanthus DK 1622]
 gi|108463434|gb|ABF88619.1| peptide deformylase [Myxococcus xanthus DK 1622]
          Length = 201

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   +V   DP+LRR +R +      + +   LI+ M + M    G+GLAA Q+GV  R+
Sbjct: 1   MVLKIVQAGDPVLRRKARDLTPEEIASPETARLIEQMRDTMRDAPGVGLAAPQVGVGLRV 60

Query: 59  VVID-----------LQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
           VVI+            +  A  + P+   V INP+++      + + EGCLS+  + A V
Sbjct: 61  VVIEDRPEYQAGLSESERAARGRKPVPFHVLINPRLVVEDAAPAEFHEGCLSVSGFAALV 120

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R+  + V  +D + Q   + A G  A  LQHELDHL+G L++D + 
Sbjct: 121 PRACAVRVDALDEHGQPVTVQARGWYARILQHELDHLDGTLYVDRME 167


>gi|315453778|ref|YP_004074048.1| polypeptide deformylase [Helicobacter felis ATCC 49179]
 gi|315132830|emb|CBY83458.1| polypeptide deformylase [Helicobacter felis ATCC 49179]
          Length = 173

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 98/157 (62%), Gaps = 5/157 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +P   LR  S  +   ++ +   +++M E M +  GIGLAA+Q+GV  R+++
Sbjct: 1   MAILEVLQYPHKKLRTRSSEVRVFDAQLHAFLEDMHETMLARKGIGLAAIQVGVPKRILI 60

Query: 61  IDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           I+L     +  H ++ +  INP I T ++   +++EGCLS+P++  +++R A +T+ Y D
Sbjct: 61  INLPREEDETQHPEDRLEIINPVI-THTEGSILWREGCLSVPEFYEEIERHANLTLAYQD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + + +++ A  LL+  +QHE+DHLNGILF+D LS L
Sbjct: 120 RHGESKMLQASELLSVAIQHEMDHLNGILFVDKLSML 156


>gi|161524426|ref|YP_001579438.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|189350819|ref|YP_001946447.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|160341855|gb|ABX14941.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|189334841|dbj|BAG43911.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
          Length = 177

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55
           + + ++   DP L  V+RP+++ +  ++  ++ +M E M+  +G GLAA QIG+      
Sbjct: 1   MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +     D    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNDRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D         A+G  A  +QHE DHL G L+   ++   R   T+ +
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167


>gi|237795811|ref|YP_002863363.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|229264121|gb|ACQ55154.1| peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 150

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 7/153 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + + +F D ILR+ S+ +E ++  I  ++++M + MY+T +G GLAA+Q+G+L RLV
Sbjct: 1   MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAALQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+      +  +  +NPKII       V  EGCLSIP+    + R A +TV+ ++ N 
Sbjct: 61  VIDMG-----QGLIKLVNPKIIKQEGTQEVI-EGCLSIPNKFGKLIRPAKVTVQALNENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  I+   G LA C  HE+DHL GILF D ++ 
Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVTE 147


>gi|50084241|ref|YP_045751.1| peptide deformylase 2 [Acinetobacter sp. ADP1]
 gi|49530217|emb|CAG67929.1| peptide deformylase 2 [Acinetobacter sp. ADP1]
          Length = 160

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 8/149 (5%)

Query: 10  PDPILRRVSRPIEK--INSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            + IL+  + P+ +   +S+ +  L+  M   M   +G+G+AA QI V  R++++  + +
Sbjct: 11  GEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIVASRPN 70

Query: 67  AHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
               +     P+V INP+I  FS +  + +EGCLS+PD R  V+R+  I VRY     Q 
Sbjct: 71  PRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRYFSLQGQL 130

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
                 G  A  +QHE+DHLNG+LF+D L
Sbjct: 131 IEQRFHGFPARIVQHEIDHLNGVLFVDRL 159


>gi|302529604|ref|ZP_07281946.1| polypeptide deformylase [Streptomyces sp. AA4]
 gi|302438499|gb|EFL10315.1| polypeptide deformylase [Streptomyces sp. AA4]
          Length = 218

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  +RP E    +  +  LI+ M E M++  G+GLAA QIG+  R+ V++
Sbjct: 25  PIVQAGDPVLRAAARPYEGELSDDTLSALIEGMKETMHAAPGVGLAAPQIGLSVRIAVVE 84

Query: 63  LQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                                    V +NP      D+ + + EGCLS+  ++A V R+ 
Sbjct: 85  DGARERPGVAESTLATRGIVPLPFRVLVNPTYTRVGDETAAFFEGCLSVRGWQAVVARAL 144

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            I +R  D           G  A  +QHE DHL+G+L++D   
Sbjct: 145 RIRLRGSDETGASLDEELSGWPARIVQHETDHLHGVLYLDRAE 187


>gi|254449483|ref|ZP_05062920.1| peptide deformylase [Octadecabacter antarcticus 238]
 gi|198263889|gb|EDY88159.1| peptide deformylase [Octadecabacter antarcticus 238]
          Length = 144

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 77/138 (55%)

Query: 22  EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81
           E  + D++ LID++ + MY   G GLAA QIGV  R+ V+D+      ++P  FINP+I 
Sbjct: 2   ELDDPDLVGLIDDLFDTMYHAKGRGLAAPQIGVTKRVFVVDVTWKEGTRDPRAFINPQIT 61

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
             + D  +  E CLSIPD    V R   I +R+   +   +    DG+LA C+QHELDHL
Sbjct: 62  ETAGDMLIMNEQCLSIPDIPMPVARPERIQLRWTRRDGGLETAVFDGILARCIQHELDHL 121

Query: 142 NGILFIDHLSRLKRDMIT 159
           NG +  DH +   R  + 
Sbjct: 122 NGTVIFDHQTPEMRTELE 139


>gi|134094555|ref|YP_001099630.1| peptide deformylase 2 like proterin [Herminiimonas arsenicoxydans]
 gi|133738458|emb|CAL61503.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas
           arsenicoxydans]
          Length = 178

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV+ P+++ N  ++  LI +M + M++  G GLAA QIGV  RLV
Sbjct: 1   MTVREILKMGDPRLLRVAEPVKEFNTPELNALIADMFDTMHAAHGAGLAAPQIGVNLRLV 60

Query: 60  VIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +   +       A      V INPK+   S +     EGCLS+P  R  V R + +    
Sbjct: 61  IYGFKQNTRYPDAPPVPETVLINPKLRPLSSEREEGWEGCLSVPGLRGVVPRFSSLHYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            D   +     ADG  A  +QHE DHL+GIL+   +   
Sbjct: 121 FDQFGKAISRDADGFHARVVQHECDHLDGILYPMRIEDF 159


>gi|119952868|ref|YP_945077.1| peptide deformylase [Borrelia turicatae 91E135]
 gi|119861639|gb|AAX17407.1| peptide deformylase [Borrelia turicatae 91E135]
          Length = 165

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 93/160 (58%), Gaps = 4/160 (2%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +P+ +LR  ++ +  I++++ N    M+ +M + +G+GLAA Q+G+   + V+    
Sbjct: 3   IVCYPNDLLRIKTKTVLNIDNELRNTAFKMVNLMDAKNGVGLAASQVGLDLSIFVV---R 59

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P++FINP I   S +  +Y+EGCLSIP    D+ R   I V   D N +   I 
Sbjct: 60  ENAMSKPLIFINPLITETSFELVLYKEGCLSIPGVYYDLLRPKSIIVEAYDENGEFFKIE 119

Query: 126 ADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164
           + GLLA  +QHE+DHL G+LFID+   +L+ +++   M K
Sbjct: 120 SSGLLARIVQHEMDHLKGVLFIDYYEDKLRNNLLRSYMKK 159


>gi|89052958|ref|YP_508409.1| formylmethionine deformylase [Jannaschia sp. CCS1]
 gi|88862507|gb|ABD53384.1| formylmethionine deformylase [Jannaschia sp. CCS1]
          Length = 161

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 3/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++++PDP+L  V   +  ++ +   LI ++ + MY+  G GLAA QIGVL R+ V
Sbjct: 1   MSVRRVLLWPDPLLSVVCDAVVAVDPE---LIKDLFDTMYAAKGRGLAAPQIGVLQRVFV 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      ++P VFINP +    +D    +E CLSIPD    V R   +T+ +     +
Sbjct: 58  VDVTWKEGARDPRVFINPVVRDSGEDMRSMEEQCLSIPDLPMQVTRPTTLTLDWETPEGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
                 DG LA C+ HELDHL+G +  DH S  +R  + 
Sbjct: 118 KTTGTFDGNLARCILHELDHLDGTVIFDHQSPARRAELE 156


>gi|28493277|ref|NP_787438.1| formylmethionine deformylase [Tropheryma whipplei str. Twist]
 gi|39930873|sp|Q83GH8|DEF_TROWT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28476318|gb|AAO44407.1| formylmethionine deformylase [Tropheryma whipplei str. Twist]
          Length = 228

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 18/164 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ I    +L   ++P+    S I  ++ +M   M++  G+GLA  QIG+  R+ V  
Sbjct: 36  ILPIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYS 94

Query: 63  LQDHAHRKNPMVFINPKIITFSD----------------DFSVYQEGCLSIPDYRADVKR 106
             +     +  V INP ++                         +EGCLS P Y+  ++R
Sbjct: 95  YTE-GDTLHQGVAINPDLLIPKGVPKRQTNKQQANNSTSCDEPDREGCLSFPGYQFPLER 153

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  +T+   D N +   ++A G LA   QHE DHL G L++D L
Sbjct: 154 APQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRL 197


>gi|162148854|ref|YP_001603315.1| peptide deformylase 2 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545397|ref|YP_002277626.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787431|emb|CAP57026.1| putative peptide deformylase 2 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533074|gb|ACI53011.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 176

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 7/169 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+L R +  + +    DI  LID+M+E M    G GLAA Q+ V  RL 
Sbjct: 1   MTLLKIARMGHPVLLRRADEVADPTAPDIARLIDDMIETMEDARGAGLAAPQVHVSLRLF 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V  +            +   V INP +    D+ ++  EGCLSIP  R  V R   I   
Sbjct: 61  VYRVPAERSAGGDDPPRETSVLINPVLSLVDDEMALRPEGCLSIPGLRGMVPRHVRIAYS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +D   Q     A G LA  LQHE DHL+GIL+   ++ L +    +++
Sbjct: 121 GLDRAGQAVQGVASGFLANVLQHEYDHLDGILYPMRMTDLGQMGFDEEI 169


>gi|309789939|ref|ZP_07684515.1| peptide deformylase [Oscillochloris trichoides DG6]
 gi|308227959|gb|EFO81611.1| peptide deformylase [Oscillochloris trichoides DG6]
          Length = 185

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 16/177 (9%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +P     L+   RP++  + ++  L+ +M E M  + G+GLAA Q+G+  
Sbjct: 1   MSTRRILRIDNPEDKKTLKMQCRPVKLPDRNLKQLVADMFETMRKSHGVGLAAPQVGLPI 60

Query: 57  RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
           +L +I++     +++             V INP+I+  S D  +  EGCLS+P +   V 
Sbjct: 61  QLCIIEIPAEIEQRDDGTEVEVAPAEEYVLINPRIVKTSGDEIMRDEGCLSLPGWYGMVP 120

Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           R +++TV Y D N +   +   DGLL   +QHE+DHL+G+LF + +  L       K
Sbjct: 121 RHSWVTVEYQDFNGKQHRLRKADGLLGWAIQHEVDHLHGVLFTERIRDLSTLRDVSK 177


>gi|260072680|gb|ACX30577.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster
           bacterium]
          Length = 163

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 20/162 (12%)

Query: 25  NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---------------- 68
           N     L+ NM E MY+ DGIGLAA QI    ++VV+D+ D                   
Sbjct: 2   NDKTRILVKNMFETMYAEDGIGLAATQINQHLQIVVMDVPDSQDDYELLLKNRKNDSDKE 61

Query: 69  ---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              + +P+ FINPKI T S     + EGCLS+P ++A+V+RS  IT+  ++   +   ++
Sbjct: 62  TNIQHHPLCFINPKITTISG-HEKHIEGCLSVPGFQAEVERSNQITIEALNEQGESFTLH 120

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           A  LLA C+QHELDHL GILF+D+LS+LK+  + +K  K+++
Sbjct: 121 ASNLLAVCIQHELDHLKGILFVDYLSKLKQKRLLEKTKKVIK 162


>gi|170703079|ref|ZP_02893901.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
 gi|171322052|ref|ZP_02910926.1| peptide deformylase [Burkholderia ambifaria MEX-5]
 gi|172060971|ref|YP_001808623.1| peptide deformylase [Burkholderia ambifaria MC40-6]
 gi|170132008|gb|EDT00514.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
 gi|171092643|gb|EDT37944.1| peptide deformylase [Burkholderia ambifaria MEX-5]
 gi|171993488|gb|ACB64407.1| peptide deformylase [Burkholderia ambifaria MC40-6]
          Length = 177

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55
           + + ++   DP L  V++P+ + +  ++  ++ +M E M+  +G GLAA QIG+      
Sbjct: 1   MIREILKMGDPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +     +    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D         A+G  A  +QHE DHL G L+   ++   R   T+ +
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167


>gi|325107786|ref|YP_004268854.1| peptide deformylase [Planctomyces brasiliensis DSM 5305]
 gi|324968054|gb|ADY58832.1| peptide deformylase [Planctomyces brasiliensis DSM 5305]
          Length = 198

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 82/151 (54%), Gaps = 2/151 (1%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +V++P P LR  S P+++INS +   +D M  +MY   GIGLAA Q+ + Y+L VI+L 
Sbjct: 2   DIVLYPHPALRYKSVPVQEINSALRKTVDEMFGLMYDAKGIGLAANQVALPYQLFVINLT 61

Query: 65  -DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D A +   MVFINP I+         +EGCLS P+    V RSA I V   D       
Sbjct: 62  ADPAEKSEEMVFINPTILKRRG-QETGEEGCLSFPEMFGPVDRSAEIVVEAFDLRGALFR 120

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                + A  +QHE DH+ G LFIDH+   +
Sbjct: 121 YELSEMAARAVQHENDHIEGTLFIDHMKEAE 151


>gi|221215452|ref|ZP_03588416.1| peptide deformylase [Burkholderia multivorans CGD1]
 gi|221164636|gb|EED97118.1| peptide deformylase [Burkholderia multivorans CGD1]
          Length = 177

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55
           + + ++   DP L  V+RP+++ +  ++  ++ +M E M+  +G GLAA QIG+      
Sbjct: 1   MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +     +    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D         A+G  A  +QHE DHL G L+   ++   R   T+ +
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167


>gi|284031698|ref|YP_003381629.1| peptide deformylase [Kribbella flavida DSM 17836]
 gi|283810991|gb|ADB32830.1| Peptide deformylase [Kribbella flavida DSM 17836]
          Length = 240

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 14/168 (8%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + + +  +  + ++ +   M +  G+GLAA Q+GV  R+ V++
Sbjct: 51  PIVQLGDPVLRRKAEPFDGQFDDGLLKDFVELLRRTMLAAPGVGLAAPQVGVPLRIAVLE 110

Query: 63  LQD-------HAHRKNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                      A  + P+ F+   NP+      D   + EGCLS+P +   V R   +  
Sbjct: 111 DPATVSAEVAEARERYPLEFLAVLNPEYAPRGRDKRGFYEGCLSMPGFTGVVSRPLKVDA 170

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            Y D     + +   G  A   QHE DHLNG L++D +    R M T 
Sbjct: 171 GYSDLTGARRRLTLSGWQARIFQHETDHLNGRLYVDQVEP--RSMATS 216


>gi|226510000|ref|NP_001140879.1| hypothetical protein LOC100272955 [Zea mays]
 gi|194701558|gb|ACF84863.1| unknown [Zea mays]
          Length = 256

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 18/168 (10%)

Query: 1   MVKKP-LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M+  P  V   DP+L   ++ +   +     +  +ID M++VM    G+GLAA QIGV  
Sbjct: 64  MMVTPGTVKAGDPVLHEPAQEVAPGDVLSEKVQGVIDRMVDVMRRAPGVGLAAPQIGVPL 123

Query: 57  RLVVI-------------DLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           R++V+             D++    R  + +V INPKI + S   +++ EGCLS+  YRA
Sbjct: 124 RIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKIKSTSKRTALFFEGCLSVDGYRA 183

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            V+R   + V  +D N     + A G  A  LQHE DHL G L++D +
Sbjct: 184 VVERHLDVEVSGLDRNGSTMKVRASGWQARILQHECDHLEGTLYVDKM 231


>gi|325831341|ref|ZP_08164595.1| peptide deformylase [Eggerthella sp. HGA1]
 gi|325486595|gb|EGC89043.1| peptide deformylase [Eggerthella sp. HGA1]
          Length = 183

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 82/158 (51%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+PIL ++  P +  +  +  L   M + MY  DG G+AA Q+GV  RLVVID   
Sbjct: 7   IVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVIDCDQ 66

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               ++P+V +NP ++    D  V  EGCLS P     + R  F  VRY D + +   I 
Sbjct: 67  DEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEEWEIE 126

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            +GLL  CLQHELDHL+GI   +    + R    +   
Sbjct: 127 GEGLLGRCLQHELDHLDGITMFERCDPMTRIEALRDYE 164


>gi|28572612|ref|NP_789392.1| peptide deformylase [Tropheryma whipplei TW08/27]
 gi|39930875|sp|Q83HQ3|DEF_TROW8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28410744|emb|CAD67130.1| peptide deformylase [Tropheryma whipplei TW08/27]
          Length = 201

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 18/164 (10%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ I    +L   ++P+    S I  ++ +M   M++  G+GLA  QIG+  R+ V  
Sbjct: 9   ILPIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYS 67

Query: 63  LQDHAHRKNPMVFINPKIITFSD----------------DFSVYQEGCLSIPDYRADVKR 106
             +     +  V INP ++                         +EGCLS P Y+  ++R
Sbjct: 68  YTE-GDTLHQGVAINPDLLIPKGVPKRQTHKQQANNSTSCDEPDREGCLSFPGYQFPLER 126

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +  +T+   D N +   ++A G LA   QHE DHL G L++D L
Sbjct: 127 APQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRL 170


>gi|114564402|ref|YP_751916.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
 gi|114335695|gb|ABI73077.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
          Length = 170

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 1   MVKKP---LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  KP   +    + IL +++ P+   +  +  L DNML  M + +G+G+AA Q+     
Sbjct: 1   MQPKPLLSIATTGEQILTQIAEPVTVFDDALHTLADNMLSTMLNANGVGIAATQVFSNAA 60

Query: 58  LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           + ++    +    +     P V INP+I++ S       EGCLSIP  R  + R + I V
Sbjct: 61  MFIMASNPNERYPDAPSMPPTVVINPQILSASAATEADVEGCLSIPGQRLSIARHSEIEV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +Y   + Q       G +A   QHE DHL GI  ++ ++
Sbjct: 121 QYQSLDGQLHQQTLTGFVARIFQHEYDHLQGITLLERVN 159


>gi|317490610|ref|ZP_07949082.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|316910286|gb|EFV31923.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
          Length = 180

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 82/158 (51%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+PIL ++  P +  +  +  L   M + MY  DG G+AA Q+GV  RLVVID   
Sbjct: 4   IVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVIDCDQ 63

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
               ++P+V +NP ++    D  V  EGCLS P     + R  F  VRY D + +   I 
Sbjct: 64  DEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEEWEIE 123

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            +GLL  CLQHELDHL+GI   +    + R    +   
Sbjct: 124 GEGLLGRCLQHELDHLDGITMFERCDPMTRIEALRDYE 161


>gi|289671064|ref|ZP_06492139.1| peptide deformylase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 171

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   D  L RV+ P+  + S ++  L+ +M E M +  G+GLAA QI V  +L+V
Sbjct: 1   MIRDIIRMGDKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A         N +I   S++     EGCLSIP  RA + R  +I  R +
Sbjct: 61  FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             +       A+G  A  +QHE DHL G L+   +         
Sbjct: 121 APDDSPIAREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFE 164


>gi|221198327|ref|ZP_03571373.1| peptide deformylase [Burkholderia multivorans CGD2M]
 gi|221208266|ref|ZP_03581270.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221171914|gb|EEE04357.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221182259|gb|EEE14660.1| peptide deformylase [Burkholderia multivorans CGD2M]
          Length = 177

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55
           + + ++   DP L  V+RP+++ +  ++  ++ +M E M+  +G GLAA QIG+      
Sbjct: 1   MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +     +    A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGS 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D         A+G  A  +QHE DHL G L+   ++   R   T+ +
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167


>gi|188583614|ref|YP_001927059.1| peptide deformylase [Methylobacterium populi BJ001]
 gi|179347112|gb|ACB82524.1| formylmethionine deformylase [Methylobacterium populi BJ001]
          Length = 171

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV++PDP L R + P+      +  L  ++L+ + +   +GL A+ IG   R+VV
Sbjct: 1   MPARPLVLYPDPRLHRAAGPVTASGEGVRALAADVLDTLGAVSAMGLTAIHIGRPERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I LQ         V+++P ++  S + + + EG +S+P     V+R A + VRY D +  
Sbjct: 61  IRLQPDEPHA---VYVDPVLVWASPERAAHPEGSVSMPGVVEPVERPARVRVRYRDLDGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GL A CLQHE+D L+GI +ID LSRL+R+ + K+ +KL   +
Sbjct: 118 EHEEEAEGLRAACLQHEIDQLDGIFWIDRLSRLRRERVLKRFAKLRTQQ 166


>gi|139436889|ref|ZP_01771049.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC
           25986]
 gi|133776536|gb|EBA40356.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC
           25986]
          Length = 180

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V+ PDP LR+    IE+I   I  L + M ++M+   G GLAA QIG L +LV ID   
Sbjct: 8   IVLSPDPRLRQECAVIEEITPAIEALAEKMKKIMFENGGCGLAAPQIGELIQLVTIDCDY 67

Query: 66  HAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                 +P V INP I+  SD    + EGCLSIP    +++R   + V   D +A     
Sbjct: 68  SDKNDYDPYVLINPVIVEQSDHLVPFSEGCLSIPGISCEIERPDHVVVEAYDLDANLIRY 127

Query: 125 YADG-LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            A G L   CLQHE+DHL+G    + L  ++R    K+  
Sbjct: 128 EATGDLFCVCLQHEIDHLHGNTMFERLKPMQRIKAVKEYQ 167


>gi|94970942|ref|YP_592990.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
 gi|94552992|gb|ABF42916.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
          Length = 208

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 17/166 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           ++  LV   +P+LR  + P+   E  + +I  LI++M + +    G+GLAA Q+GV  +L
Sbjct: 13  MRLKLVQAGEPVLRTPAEPLAIKEIASREIARLIEDMRDTLEDAPGVGLAAPQVGVPIQL 72

Query: 59  VVIDLQDHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
            +I+ +    +  P               V INP +         + EGCLS+  + A V
Sbjct: 73  AIIEDRAEYSKDIPTEQLAERGRVPVPFHVIINPVLKPLGKSQVDFFEGCLSVAGFIAVV 132

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            R   + V  +D N   + I A G  A  LQHE+DHLNG L++D +
Sbjct: 133 PRYRKVRVTCLDENGAQRRIEASGWYARILQHEIDHLNGTLYVDRM 178


>gi|329938533|ref|ZP_08287958.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
 gi|329302506|gb|EGG46397.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
          Length = 218

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P E ++++ +++  +  +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 28  PIVAAGDPVLRRGAEPFEGQLDAPLLDRFLAALRATMHAAPGVGLAAPQVGVPLRIAVIE 87

Query: 63  LQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +             V +NP      ++ + + EGCLS+P ++A V R A + +
Sbjct: 88  DPAPVPEEVRSARGRVPQPYRVLVNPSYEAVGEERAAFFEGCLSVPGWQAVVARHARVRL 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R +D           G  A  +QHE DHL+G L++D    
Sbjct: 148 RGLDARGAVLDEEFAGWPARIVQHETDHLDGTLYLDRAEP 187


>gi|237843361|ref|XP_002370978.1| peptide deformylase, putative [Toxoplasma gondii ME49]
 gi|211968642|gb|EEB03838.1| peptide deformylase, putative [Toxoplasma gondii ME49]
 gi|221502320|gb|EEE28053.1| peptide deformylase, putative [Toxoplasma gondii VEG]
 gi|289064341|gb|ADC80546.1| peptide deformylase [Toxoplasma gondii]
          Length = 353

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 2   VKKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           V   ++  P  +LR  + P  +    +   L  ++L VMY   G+GLAA Q+GV  +++V
Sbjct: 183 VTLDVLAAPHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIV 242

Query: 61  ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +   D        VF+NP++++         EGCLS+P   A V+R     VRY     
Sbjct: 243 WNPTGDVRESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEG 302

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             +     GL A  +QHE+DHL+GILF+D + R +R
Sbjct: 303 IQREATLSGLEARVVQHEIDHLHGILFVDRVHRGER 338


>gi|290955665|ref|YP_003486847.1| polypeptide deformylase [Streptomyces scabiei 87.22]
 gi|260645191|emb|CBG68277.1| polypeptide deformylase [Streptomyces scabiei 87.22]
          Length = 218

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + +++  +    +  +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 28  PIVAAGDPVLRRTAEPFDGQLDPALLARFVAALRATMHAAPGVGLAAPQVGVSLRIAVIE 87

Query: 63  LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +  +          V +NP           + EGCLS+P ++A V R A + +
Sbjct: 88  DPAPVPEEVRLARGRVPQPFRVLVNPAYEAVGPFRDAFFEGCLSVPGWQAVVARHARVRL 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R +D   +       G  A  +QHE DHLNG L++DH  
Sbjct: 148 RALDERGRAVDEEFSGWPARIVQHETDHLNGTLYLDHAE 186


>gi|295698622|ref|YP_003603277.1| peptide deformylase [Candidatus Riesia pediculicola USDA]
 gi|291157320|gb|ADD79765.1| peptide deformylase [Candidatus Riesia pediculicola USDA]
          Length = 151

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 58/147 (39%), Positives = 95/147 (64%), Gaps = 2/147 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PD  LR+V++P++ I S+I +L+ NM ++MY   GIGLAA Q+ +  R+VVI++  
Sbjct: 7   ILQYPDSRLRKVAKPVKLITSEIKDLVRNMFKIMYEKGGIGLAATQVNIHQRIVVINIS- 65

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
              +K+ +  INP I++ S      +E CLS+ +    + RS FI V+    + +  I +
Sbjct: 66  QREKKDELTLINPIILS-SHGVISLEERCLSVSNRAGCILRSKFIEVKTKSLSGKEFIFH 124

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSR 152
           A GLL+ C+QHE+DHL+G LFID+L +
Sbjct: 125 AKGLLSVCIQHEVDHLDGKLFIDYLRK 151


>gi|226729275|sp|B6RGY0|DEF1A_ORYSJ RecName: Full=Peptide deformylase 1A, chloroplastic; Short=OsPDF1A;
           Short=PDF 1A; Flags: Precursor
 gi|164633052|gb|ABY64739.1| peptide deformylase 1A [Oryza sativa Japonica Group]
          Length = 260

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 18/170 (10%)

Query: 1   MVKKP-LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M   P  V   DP+L   ++ +   +     +  +ID M+ VM    G+GLAA QIGV  
Sbjct: 68  MTVTPGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPL 127

Query: 57  RLVVI-------------DLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           +++V+             D++    R  + +V INPK+ T S   +++ EGCLS+  YRA
Sbjct: 128 KIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRA 187

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V+R   + V  +D N +   + A G  A  LQHE DHL G L++D +  
Sbjct: 188 LVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVP 237


>gi|119960758|ref|YP_947936.1| peptide deformylase [Arthrobacter aurescens TC1]
 gi|119947617|gb|ABM06528.1| peptide deformylase [Arthrobacter aurescens TC1]
          Length = 224

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 12/158 (7%)

Query: 6   LVIFPDPILRRVSRPIE-KINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +V    P+LR+++ P + +I+  ++   ++ M EVM+   G+GLAA Q+G+  +L V++ 
Sbjct: 37  IVQAGHPVLRQLAAPYDGQIDDAELAAFLERMKEVMHDAPGVGLAAPQLGIPLQLAVLED 96

Query: 64  -------QDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                        + P+ F   +NP+      + + + EGCLS+  Y+A V R   + +R
Sbjct: 97  KYEVDPESAAVRHREPLEFFAIVNPQYRPLGTETASFYEGCLSVSGYQAVVTRHRNVELR 156

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y +   +    +  G  A  +QHE DHL GIL++D   
Sbjct: 157 YTNPAGEPVEEWFSGWQARIVQHETDHLRGILYLDRAE 194


>gi|307822304|ref|ZP_07652536.1| peptide deformylase [Methylobacter tundripaludum SV96]
 gi|307736870|gb|EFO07715.1| peptide deformylase [Methylobacter tundripaludum SV96]
          Length = 178

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M   + +      +LR+ +  +  + + +I  +I+ M   + +T G+G+AA QI  L ++
Sbjct: 1   MTRVREIAQLGAKVLRQKAEAVADVHDVEIRQIIEAMQSTLATTSGVGIAAPQISKLKQI 60

Query: 59  VVIDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           ++I  +            P V INP     S+      EGCLS+P  RA V R   I + 
Sbjct: 61  IIIASRPTPRYPSAPLMEPTVMINPCFEVLSEAQEKGWEGCLSVPGIRALVPRYQEIMIH 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           Y D           G +A   QHE+DHL G  ++D +          +  KLV
Sbjct: 121 YTDQQGGLVESKLSGFVARIFQHEVDHLEGKTYLDRVENNADIFAESEYVKLV 173


>gi|297564644|ref|YP_003683616.1| peptide deformylase [Meiothermus silvanus DSM 9946]
 gi|296849093|gb|ADH62108.1| peptide deformylase [Meiothermus silvanus DSM 9946]
          Length = 195

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 17/183 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++ DP+LR+ +  ++   S+I  L +NM E M+   G+GLAA Q+G   RL V 
Sbjct: 1   MIYPIRLYGDPVLRKRASSVKDF-SEIPRLAENMFETMFEARGVGLAAPQVGRSERLFVF 59

Query: 62  -------------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRS 107
                        +       KN  V +NP I T+     +  EGCLSIP  Y  +V R 
Sbjct: 60  AEYVDAEDEEEGEEADLKTRVKNQWVMVNPAI-TYRAGQQISTEGCLSIPGLYSDEVPRD 118

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS-KLV 166
             I V Y +   + +    +G LA  +QHELDHL+G LF + L +  +    ++   +L 
Sbjct: 119 LQIRVEYQNELGEKKTQEFEGYLAVVVQHELDHLDGTLFFERLPKDLKAAFLEEHRHELA 178

Query: 167 QLR 169
           +++
Sbjct: 179 EMQ 181


>gi|87162608|gb|ABD28403.1| Formylmethionine deformylase [Medicago truncatula]
          Length = 257

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP++   +R ++     +  I N+ID+M+ VM    G+G+AA QIG+  R++V++
Sbjct: 70  IVKAGDPVIHEPAREVDHSEIKSDKIQNIIDDMILVMRKAPGVGVAAPQIGIPLRIIVLE 129

Query: 63  LQD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            ++                   + +V +NPK+   S+  + + EGCLS+  ++A V+R  
Sbjct: 130 DKEEFICYNTEEETKAQDRRPFDLLVILNPKLKNKSNRTAFFFEGCLSVDRFQALVERYL 189

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + V   D   +   I A G  A  LQHE DHL+G L++D +  
Sbjct: 190 DVEVTGFDRYGEPIKINASGWQARILQHECDHLDGTLYVDKMVP 233


>gi|299139618|ref|ZP_07032792.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
 gi|298598546|gb|EFI54710.1| peptide deformylase [Acidobacterium sp. MP5ACTX8]
          Length = 191

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 17/166 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           ++  +V   +P+LR  S+ + K   ++  I NLID M E +    G+GLAA Q+G   +L
Sbjct: 1   MRLKIVTVGEPVLRATSQMLSKEQILSPSIQNLIDYMRETVRDAPGVGLAAPQVGESLQL 60

Query: 59  VVID-------------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
            VI+             +++      P  V +NP +    +  + + EGCLS+P + A V
Sbjct: 61  AVIEDKAEYHKNLTEAEMKERGRAAVPFHVLVNPVLEVRGESTATFFEGCLSLPGFTALV 120

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            R+  + V  +D   + ++I A G  A  LQHE+DHL+G L+ID +
Sbjct: 121 PRAKEVRVTGLDHRGEPRVIEASGWYARILQHEIDHLHGTLYIDRM 166


>gi|239503010|ref|ZP_04662320.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB900]
          Length = 160

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 8/158 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + IL+  + P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R+
Sbjct: 3   VVLPVAKRGEDILKLTAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRI 62

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + V+
Sbjct: 63  IIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVK 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 123 YLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|117926769|ref|YP_867386.1| peptide deformylase [Magnetococcus sp. MC-1]
 gi|117610525|gb|ABK45980.1| peptide deformylase [Magnetococcus sp. MC-1]
          Length = 177

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 92/177 (51%), Gaps = 9/177 (5%)

Query: 1   MVKKPLVIFPDPILRRVSR--PIEKI-NSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLY 56
           M    ++++PD  L +  R    E+   +     +++++E      G +GLAA Q+    
Sbjct: 1   MAILDVLVYPDQRLLQPCRSLEAEEFKTAAFQAFVEDLIETTQHAPGCVGLAAPQVDHAI 60

Query: 57  RLVVIDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           R+VV++              ++  NP+II++ +     +EGC+S+PDY  +V R+  I+V
Sbjct: 61  RMVVVNCGLARKPPDEHHGELILCNPEIISW-EGMETAREGCMSVPDYTGNVMRATHISV 119

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           ++ D + Q Q+ +  G  A  +QHE+DHL G LF D +   K D+  +K+ +  + R
Sbjct: 120 QFQDRHGQEQVRHFKGFEARVVQHEMDHLEGKLFTDRVVSRKADLFPRKVYQKKRNR 176


>gi|254252055|ref|ZP_04945373.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
 gi|124894664|gb|EAY68544.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
          Length = 177

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 6/167 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55
           + + ++   DP L  V+ P+ + +  ++  ++ +M + M+  +G GLAA QIG+      
Sbjct: 1   MIREILKMGDPRLLEVAEPVRQFDTPELHEIVADMFDTMHHANGAGLAAPQIGIGLQIII 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +     +    A      V INPKI     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGSNNRYPDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYVGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D         A+G  A  +QHE DHL G L+   ++   R   T+ +
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFTEVL 167


>gi|184157242|ref|YP_001845581.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
 gi|332872902|ref|ZP_08440866.1| peptide deformylase [Acinetobacter baumannii 6014059]
 gi|183208836|gb|ACC56234.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
 gi|193076693|gb|ABO11393.2| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978]
 gi|322507127|gb|ADX02581.1| Peptide deformylase 2 [Acinetobacter baumannii 1656-2]
 gi|323517106|gb|ADX91487.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332738913|gb|EGJ69776.1| peptide deformylase [Acinetobacter baumannii 6014059]
          Length = 160

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 8/158 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R+
Sbjct: 3   VVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRI 62

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + V+
Sbjct: 63  IIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVK 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 123 YLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|295395559|ref|ZP_06805753.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971578|gb|EFG47459.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 237

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  +   + +I+   ++ L+  M   M +  G+GLAA Q+G+  RL V +
Sbjct: 43  PIVTAGDPVLRTTTARFDGQIDDSTLLELLTAMRTTMLAAPGVGLAAPQVGISLRLAVCE 102

Query: 63  LQDH-------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                      A  + P+     INP     +D    + EGCLSIP Y+A V R   +T+
Sbjct: 103 DPGTTSAEHAAARERTPLPFTALINPTYQPATDQLVAFYEGCLSIPGYQAVVARPRTVTL 162

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              D           G     + HE DHL+GIL++D   
Sbjct: 163 TAHDHQGATITKDITGWAGRIIAHETDHLDGILYLDKAE 201


>gi|333023046|ref|ZP_08451110.1| putative peptide deformylase [Streptomyces sp. Tu6071]
 gi|332742898|gb|EGJ73339.1| putative peptide deformylase [Streptomyces sp. Tu6071]
          Length = 214

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  + P E    +  +  L+  M   M    G+GLAA QIGV  RL V++
Sbjct: 25  PIVAAGDPVLRTPAAPYEGQLPEALLSRLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 84

Query: 63  LQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +             V +NP      +  + + EGCLS+P ++A V R A + +
Sbjct: 85  DPATVPEEVRRVREREPLPYRVLVNPVCEGVGERRAAFYEGCLSVPGWQAVVARHAVVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           R  D + +       G  A  +QHE DHL+G L++D 
Sbjct: 145 RAEDEHGRGLDEEVRGWPARIVQHETDHLDGTLYVDR 181


>gi|169796843|ref|YP_001714636.1| peptide deformylase 2 [Acinetobacter baumannii AYE]
 gi|213156766|ref|YP_002318427.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|215484319|ref|YP_002326548.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|301345256|ref|ZP_07225997.1| peptide deformylase [Acinetobacter baumannii AB056]
 gi|301510240|ref|ZP_07235477.1| peptide deformylase [Acinetobacter baumannii AB058]
 gi|301594430|ref|ZP_07239438.1| peptide deformylase [Acinetobacter baumannii AB059]
 gi|332854474|ref|ZP_08435381.1| peptide deformylase [Acinetobacter baumannii 6013150]
 gi|332870910|ref|ZP_08439542.1| peptide deformylase [Acinetobacter baumannii 6013113]
 gi|169149770|emb|CAM87661.1| peptide deformylase 2 [Acinetobacter baumannii AYE]
 gi|213055926|gb|ACJ40828.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|213986720|gb|ACJ57019.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|332727962|gb|EGJ59355.1| peptide deformylase [Acinetobacter baumannii 6013150]
 gi|332731873|gb|EGJ63152.1| peptide deformylase [Acinetobacter baumannii 6013113]
          Length = 160

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 8/158 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R+
Sbjct: 3   VVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRV 62

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + V+
Sbjct: 63  IIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVKVK 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 123 YLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|20150600|pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150601|pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150602|pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150603|pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150604|pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150605|pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150606|pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150607|pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150608|pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
 gi|20150609|pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
           With Ten Subunits Per Asymmetric Unit Reveal Critical
           Characteristics Of The Active Site For Drug Design
          Length = 183

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 3/163 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V +PDPILRR S  +   + ++  ++    ++ Y + GIGL+A Q+ +  R++V + L 
Sbjct: 5   IVKYPDPILRRRSE-VTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNALY 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +    +N  +FINP I+  S       EGCLS       V+R + +++ Y D N    + 
Sbjct: 64  EKRKEENERIFINPSIVEQSLVKLKLIEGCLSF-GIEGKVERPSIVSISYYDINGYKHLK 122

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G+ +   QHE DHLNG LFID  +++ +  +  K+++L++
Sbjct: 123 ILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 165


>gi|254490724|ref|ZP_05103908.1| peptide deformylase [Methylophaga thiooxidans DMS010]
 gi|224464079|gb|EEF80344.1| peptide deformylase [Methylophaga thiooxydans DMS010]
          Length = 178

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            ++    P+LR+ + P+  I           +L  +    G+G+AA Q+G+  +  ++  
Sbjct: 6   DILQLGHPLLRQRAEPVYDILAPAFQAQAKALLSFVIEKGGMGIAAPQVGISQQFFILSS 65

Query: 64  QD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
                  +A    P   INP+ I  SD  +   EGCLS+P  RA V R   ITVRY    
Sbjct: 66  HPNSRYPYAPDVPPFFVINPERIAHSDTSNKDWEGCLSLPGIRALVPRFDDITVRYQTLE 125

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                   DG LA   QHE DHLNG +F+D +      M+ K+  K +
Sbjct: 126 GDTVEKMYDGFLARVFQHEHDHLNGHVFLDRVESNYDVMMEKEWQKQI 173


>gi|253996543|ref|YP_003048607.1| peptide deformylase [Methylotenera mobilis JLW8]
 gi|253983222|gb|ACT48080.1| peptide deformylase [Methylotenera mobilis JLW8]
          Length = 181

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 10/164 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   +P L   + P+ + N+ ++  LI ++ + M   +G G+AA QIGV  R+V
Sbjct: 1   MAIGAVLRMGEPCLLAKAEPVAQFNTAELHQLIQDLEDTMQHMNGAGIAAPQIGVSLRVV 60

Query: 60  VIDLQDHA--HRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   ++ A  + + P        V INPK+    D      EGCLS+P  R  V R   +
Sbjct: 61  IFGQKEPAAVNPRYPDADAVPYTVLINPKLTLIGDKIENDWEGCLSVPGMRGIVPRHLKL 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                D           G  A  +QHE DHL+G+L+   +  LK
Sbjct: 121 HYTGFDQYGNKVDRLVSGFHARVVQHECDHLDGVLYPMRIRDLK 164


>gi|242046748|ref|XP_002461120.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor]
 gi|241924497|gb|EER97641.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor]
          Length = 193

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 18/170 (10%)

Query: 1   MVKKP-LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M   P  V   DP+L   ++ +   +     +  +ID M++VM    G+GLAA QIGV  
Sbjct: 1   MAVTPGTVKAGDPVLHEPAQEVAPGDVRSEKVQGIIDRMVDVMRKAPGVGLAAPQIGVPL 60

Query: 57  RLVVID-------------LQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           R++V++             ++    R  + ++ INPKI   S   +++ EGCLS+  YRA
Sbjct: 61  RIIVLEDTQEYISYAPKKEIEAQDRRPFDLLIIINPKIKNTSKRTALFFEGCLSVDGYRA 120

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V+R   + V  +D N     + A G  A  LQHE DHL G L++D +  
Sbjct: 121 VVERHLDVEVSGLDRNGSAIKVQASGWQARILQHECDHLEGTLYVDRMVP 170


>gi|221481821|gb|EEE20191.1| peptide deformylase, putative [Toxoplasma gondii GT1]
          Length = 353

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 2   VKKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           V   ++  P  +LR  + P  +    +   L  ++L VMY   G+GLAA Q+GV  +++V
Sbjct: 183 VTLDVLAAPHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIV 242

Query: 61  ID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +   D        VF+NP++++         EGCLS+P   A V+R     VRY     
Sbjct: 243 WNPTGDVRESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEG 302

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + +   GL A  +QHE+DHL+GILF+D + R
Sbjct: 303 IQREVTLSGLEARVVQHEIDHLHGILFVDRVHR 335


>gi|29833891|ref|NP_828525.1| peptide deformylase [Streptomyces avermitilis MA-4680]
 gi|39931072|sp|Q825U9|DEF3_STRAW RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName:
           Full=Polypeptide deformylase 3
 gi|29611016|dbj|BAC75060.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
          Length = 224

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++   +    ++ +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 34  PIVAAGDPVLRRGAEPYDGQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVIE 93

Query: 63  LQDH---------AHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                             P  V +NP       D + + EGCLS+P ++A V R A + +
Sbjct: 94  DPAPVPEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARPARVRL 153

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +D + +       G  A  +QHE DHL+G+L++D   
Sbjct: 154 TALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDRAE 192


>gi|332525977|ref|ZP_08402118.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
 gi|332109528|gb|EGJ10451.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
          Length = 188

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    ++   D  L RV++P+E  +   +  L+ +M+E M +  G GLAA Q+GV  +LV
Sbjct: 11  MPVHEILKMGDARLLRVAQPVEAFDTPALHALVADMIETMAAAHGAGLAAPQVGVDLQLV 70

Query: 60  VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           V   + +            V  NP I   SD+     EGCLS+P  R  V R A I    
Sbjct: 71  VFGFERNERYPEAPAVPMTVLCNPVITPLSDETVDGWEGCLSVPGLRGVVPRFARIRYTG 130

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            D   +     A+G  A  +QHE DHL G L+   ++ L +
Sbjct: 131 FDAQGRPIEREAEGFHARVVQHECDHLIGRLYPTRMNDLTK 171


>gi|284045178|ref|YP_003395518.1| peptide deformylase [Conexibacter woesei DSM 14684]
 gi|283949399|gb|ADB52143.1| peptide deformylase [Conexibacter woesei DSM 14684]
          Length = 167

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           + +  F DP+L+  +  + + + D+   I  M E+M    GIGLAA Q+G L R++V  +
Sbjct: 2   RYVRQFGDPVLKSRAMTVSRFDDDLREQIRGMGEIMNDAFGIGLAATQLGKLNRVLVYRV 61

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
           +  +     +  +NP++    D+    +EGCLS+     DV+R   + VR  D      I
Sbjct: 62  EQDSPA---IALVNPELEWSGDELETAEEGCLSLRGVLVDVERPVHVRVRAQDEQGSTVI 118

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           I A GL A  +QHE+DHL+G+L +D  SR +R    + + +
Sbjct: 119 IEASGLEARVIQHEMDHLDGVLILDRTSRDQRKQAMRALRE 159


>gi|260555892|ref|ZP_05828112.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606]
 gi|260410803|gb|EEX04101.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606]
          Length = 160

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 91/158 (57%), Gaps = 8/158 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R+
Sbjct: 3   VVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRV 62

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A   N +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + V+
Sbjct: 63  IIVASRPNPRYPDAPEMNAVVMVNPEILEFSSEMCLGEEGCLSVPDERGQVERAEMVKVK 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y+    +       G  A  +QHE+DHL+GILF++ +S
Sbjct: 123 YLTLQGETVETIFHGFPARIVQHEVDHLDGILFVERIS 160


>gi|297171900|gb|ADI22887.1| N-formylmethionyl-tRNA deformylase [uncultured Rhizobium sp.
           HF0500_35F13]
          Length = 194

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 1/161 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P P LRR    + ++++++   I  M E+MY  +GIGLAA Q+ +  R  +++   
Sbjct: 3   ILHYPHPALRRKCSIVRRVDAELRETISEMYELMYEANGIGLAANQVDLPLRFFIVNTAG 62

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +VFINP + +  +     +EGCLSIP     V R   I V+  +   Q     
Sbjct: 63  DRDEGEELVFINPVL-SQPEGRGEEEEGCLSIPAVYGKVMRPTTIHVQAYNLEGQPFSAE 121

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               LA  +QHE DHL+G+LF D +S   +  +   + +  
Sbjct: 122 LSETLARVVQHETDHLDGVLFTDRISHDDKPRVDLLLEEFA 162


>gi|255319189|ref|ZP_05360406.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262379692|ref|ZP_06072848.1| polypeptide deformylase [Acinetobacter radioresistens SH164]
 gi|255303582|gb|EET82782.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262299149|gb|EEY87062.1| polypeptide deformylase [Acinetobacter radioresistens SH164]
          Length = 159

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEK--INSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M    P+    + +L   +  + +   N++ +  L   M   M   +G+G+AA Q+ +  
Sbjct: 1   MSISLPVAQRGEKVLTLKAAEVSENEFNTEWLRQLAQAMHTTMLEQNGVGIAAPQVYISK 60

Query: 57  RLVVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           R++++  +       A     +V +NP+I+ FS + S+ +EGCLS+ D R  V+R+  + 
Sbjct: 61  RIIIVASRSNPRYPDAPEMEAVVMVNPEILEFSRETSLGEEGCLSVSDVRGTVERAETVK 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           + Y+    +       G  A  +QHE+DHLNGILF++ L
Sbjct: 121 LCYLTLEGEPVETIYKGFPARIIQHEIDHLNGILFVERL 159


>gi|91794262|ref|YP_563913.1| peptide deformylase [Shewanella denitrificans OS217]
 gi|91716264|gb|ABE56190.1| Peptide deformylase [Shewanella denitrificans OS217]
          Length = 168

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 5/159 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ I  +PIL R++  + + ++ ++ L D+ML  M + +G+G+AA Q+     + V+ 
Sbjct: 6   ILPIAITGEPILNRIAVKVSQFDASLIQLADDMLATMMAANGVGIAAGQVHSPLAMFVMA 65

Query: 63  LQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            + +    N     P V INP+I+++S       EGCLSIPD R  + RS  I  R+ + 
Sbjct: 66  SRPNERYPNAPVTEPRVIINPQILSYSTQTQAGIEGCLSIPDSRMSIVRSQQIDTRFQNL 125

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             +          A   QHE DH+ GI  I+ L++ ++ 
Sbjct: 126 KGEFIEQSFSDFEARIFQHEFDHIKGITLIERLAQQQKQ 164


>gi|325121302|gb|ADY80825.1| peptide deformylase 2 [Acinetobacter calcoaceticus PHEA-2]
          Length = 160

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 8/158 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + IL+  + P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R+
Sbjct: 3   VVLPVAKRGEDILKLTAAPVSVNELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRV 62

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A     +V +NP+I+ FSD+  + +EGCLS+PD R  V+R+  + V+
Sbjct: 63  IIVASRPNPRYPDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVKVK 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 123 YLTLQGETVETNFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|295835488|ref|ZP_06822421.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|295825514|gb|EFG64289.1| peptide deformylase [Streptomyces sp. SPB74]
          Length = 221

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  + P E       +  L+  M   M    G+GLAA QIGV  RL V++
Sbjct: 32  PIVAAGDPVLRTPAAPYEGQLPGPLLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 91

Query: 63  LQ-------DHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                         + P+   V +NP      +  +++ EGCLS+P ++A V R A + +
Sbjct: 92  DPATVPEEVRRMRGREPLPYRVLVNPHYAPAGERRALFYEGCLSVPGWQAVVARHAVVRL 151

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           R  D +         G  A  +QHE DHL+G L++D 
Sbjct: 152 RAEDEHGTALDEEVGGWAARIVQHETDHLDGTLYVDR 188


>gi|295839268|ref|ZP_06826201.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|295827384|gb|EDY42650.2| peptide deformylase [Streptomyces sp. SPB74]
          Length = 250

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 6/165 (3%)

Query: 9   FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
             + IL R            +  L+ +M   MY  +G GLAA Q+GV  RL V D  D  
Sbjct: 64  VGEEILARRCAEATVFGTPGLARLVADMFLTMYLAEGAGLAANQVGVDLRLFVYDRFDDE 123

Query: 68  HRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             ++    +N  I   +   ++ +  EGCLS+P  R  + R+    +R +D + +   I 
Sbjct: 124 GARHVGHVLNRVIDEAASGRALVEDVEGCLSVPGARHGLARADRTVLRGVDRDGRPVTIE 183

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             G  A CLQHE DHLNG++++D L +  R  +   ++ + + RD
Sbjct: 184 GTGYFARCLQHETDHLNGMVYVDRLGKRARRAV---LADMAEARD 225


>gi|328955668|ref|YP_004373001.1| peptide deformylase [Coriobacterium glomerans PW2]
 gi|328455992|gb|AEB07186.1| peptide deformylase [Coriobacterium glomerans PW2]
          Length = 185

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V+ PD  LRR   PIE+I  +I  L  +M + M+   G GLAA Q+G   +++V
Sbjct: 1   MEINGIVLSPDERLRRECAPIEEITPEIERLASHMKQEMFENAGCGLAAPQVGQTVQMIV 60

Query: 61  IDLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ID    +    +P V INP II  SD  + + EGCLSIP    ++ R   + V   D +A
Sbjct: 61  IDTSYTSREDYDPYVLINPVIIEQSDRLTAFSEGCLSIPGISCEIYRPDHVVVEAYDLDA 120

Query: 120 QHQIIYADG-LLATCLQHELDHLNGILFIDHLSR 152
                 A G L+  CLQHE+DHL GI   + L  
Sbjct: 121 NLIRYEAAGDLMCVCLQHEIDHLKGITMFERLDP 154


>gi|255630300|gb|ACU15506.1| unknown [Glycine max]
          Length = 221

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 72/136 (52%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDP LR  ++ I   +  +  L+  M +VMY TDGIGL+A Q+G+  +L+V +   
Sbjct: 77  IVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVG 136

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                  +V +NP++  +S   +++ EGCLS P   ADVKR   + +     N     + 
Sbjct: 137 EHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARGINGTMFSVN 196

Query: 126 ADGLLATCLQHELDHL 141
              L A   QHE DHL
Sbjct: 197 LSDLPARIFQHEFDHL 212


>gi|293608925|ref|ZP_06691228.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829498|gb|EFF87860.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 160

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 8/158 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R+
Sbjct: 3   VVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRV 62

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A     +V +NP+I+ FSD+  + +EGCLS+PD R  V+R+  + V+
Sbjct: 63  IIVASRPNLRYPDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVKVK 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 123 YLTLQGETVETIFHGFPARIVQHEVDHLNGILFVERIS 160


>gi|269796214|ref|YP_003315669.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM
           10542]
 gi|269098399|gb|ACZ22835.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM
           10542]
          Length = 211

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 9/158 (5%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             P+V    P+LR+ +   + ++   +  L+D+M   M    G+GLAA QIG+  ++ V+
Sbjct: 22  VLPIVQAGHPVLRQPAAAYDGQLGDLLPALLDSMRLTMVDAPGVGLAAPQIGIGLQIAVL 81

Query: 62  DLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                   ++P         V +NP      D+   + EGCLS+  Y+A V R   + + 
Sbjct: 82  HDAGSTDPEDPRERTPLEHRVLVNPSYEGVGDEVRSFYEGCLSVEGYQAVVARHRTVRLT 141

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             D   +       G  A  +QHE DHL G L+IDH  
Sbjct: 142 GQDETGRALDEQLTGWPARIVQHETDHLRGQLYIDHAE 179


>gi|320108553|ref|YP_004184143.1| peptide deformylase [Terriglobus saanensis SP1PR4]
 gi|319927074|gb|ADV84149.1| peptide deformylase [Terriglobus saanensis SP1PR4]
          Length = 187

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 18/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           +   +    DP+LR+ +R +   E ++  I  L+ NM E M+   G+GLAA QIG   +L
Sbjct: 1   MLLNICTAGDPVLRKQARALSQEEILSPAIQELVKNMRETMWRAPGVGLAAPQIGESLQL 60

Query: 59  VVIDLQDHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
            V++ +   H+K              + +   NPKI       S Y EGCLSIP + A V
Sbjct: 61  AVLEGRPQFHKKMNEAEVKEWQSTPYDYLAIFNPKIELLPAHVSAY-EGCLSIPGFMASV 119

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            RS  + V  ++  A+ Q+I A+G  A  LQHE+DHLNG+L+ID + 
Sbjct: 120 PRSQSVRVTCLNEKAEPQVIEAEGWFARILQHEIDHLNGVLYIDRME 166


>gi|167747469|ref|ZP_02419596.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662]
 gi|167652831|gb|EDR96960.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662]
          Length = 153

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +    DPIL++  + + +++      +D++++ ++S+ +G  LAA Q G+L R++
Sbjct: 1   MAVRKIRTGNDPILKKKCKTVPEVDDKARQQLDDLMDTLHSSDNGAALAANQAGILRRMI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID + +  +      +NP I+  S       EGCLS P+      R A + V  +D N 
Sbjct: 61  VIDYEGYYLK-----LVNPVIVESSGSQECV-EGCLSFPNRFGKTIRPARVKVEALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                   G +A C  HE+DHL+G +FID +
Sbjct: 115 HEVSYTVVGEMAKCFCHEIDHLDGEVFIDKV 145


>gi|289677568|ref|ZP_06498458.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 121

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 58/121 (47%), Positives = 80/121 (66%), Gaps = 2/121 (1%)

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           AA Q+ V  R+VV+DL +   R  PMV INP+I   +D+   YQEGCLS+P +  +V R 
Sbjct: 1   AATQVNVHKRVVVMDLSE--DRSEPMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRP 58

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + V+ +D + +   + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +
Sbjct: 59  QKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 118

Query: 168 L 168
           L
Sbjct: 119 L 119


>gi|83855042|ref|ZP_00948572.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
 gi|83842885|gb|EAP82052.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
          Length = 145

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 82/142 (57%), Gaps = 2/142 (1%)

Query: 23  KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT 82
           +IN +I  L D+M++ M +  G+GLAA QIGV  ++ V+D      ++  +   NP +I 
Sbjct: 3   EINDEIRALWDDMIDTMDAMPGVGLAAPQIGVSLQVAVVDASQARDKR--IRLANPVVID 60

Query: 83  FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            S   + Y+E   ++P   A ++R   + VRY+D           GL AT +QH++DHL 
Sbjct: 61  ASAIMNEYEEASPNLPGISAKIRRPRGVKVRYLDEQGATVTRDFVGLEATSVQHQIDHLA 120

Query: 143 GILFIDHLSRLKRDMITKKMSK 164
           G +F+D+LS+ +RDM+ +K  K
Sbjct: 121 GKMFVDNLSKTRRDMLLRKARK 142


>gi|84060919|ref|YP_444131.1| hypothetical protein O2ColV76 [Escherichia coli]
 gi|3288155|emb|CAA11508.1| hypothetical protein [Escherichia coli]
 gi|76781994|gb|AAX22071.2| conserved hypothetical protein [Escherichia coli]
          Length = 149

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 88/134 (65%), Gaps = 4/134 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+   IGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAES-IGLAATQVDIHQRIIV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 60  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGK 116

Query: 121 HQIIYADGLLATCL 134
              + ADGLLA C+
Sbjct: 117 PFELEADGLLAICI 130


>gi|227517269|ref|ZP_03947318.1| peptide deformylase [Enterococcus faecalis TX0104]
 gi|229548020|ref|ZP_04436745.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|307270561|ref|ZP_07551859.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|307284851|ref|ZP_07565007.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|312902126|ref|ZP_07761386.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|312905430|ref|ZP_07764544.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|312906688|ref|ZP_07765688.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|227075276|gb|EEI13239.1| peptide deformylase [Enterococcus faecalis TX0104]
 gi|229306896|gb|EEN72892.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|306503110|gb|EFM72367.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|306513142|gb|EFM81776.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|310627336|gb|EFQ10619.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|310631159|gb|EFQ14442.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|311290790|gb|EFQ69346.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|315026429|gb|EFT38361.1| peptide deformylase [Enterococcus faecalis TX2137]
 gi|315146582|gb|EFT90598.1| peptide deformylase [Enterococcus faecalis TX4244]
 gi|315161200|gb|EFU05217.1| peptide deformylase [Enterococcus faecalis TX0645]
 gi|315171198|gb|EFU15215.1| peptide deformylase [Enterococcus faecalis TX1342]
 gi|315577116|gb|EFU89307.1| peptide deformylase [Enterococcus faecalis TX0630]
 gi|315581154|gb|EFU93345.1| peptide deformylase [Enterococcus faecalis TX0309A]
          Length = 150

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 4/134 (2%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
            ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI++ + + R      I
Sbjct: 2   KAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGRFE---LI 58

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP II      S+  EGCLSIP+    V+R+  +TVRY D   +   + A G LA   QH
Sbjct: 59  NPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQH 117

Query: 137 ELDHLNGILFIDHL 150
           E+DHLNG LFID +
Sbjct: 118 EIDHLNGELFIDKM 131


>gi|308177432|ref|YP_003916838.1| peptide deformylase [Arthrobacter arilaitensis Re117]
 gi|307744895|emb|CBT75867.1| peptide deformylase [Arthrobacter arilaitensis Re117]
          Length = 213

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 3   KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V    P+LR+ +   E       +  L++ M + MY   G+GLAA Q+G+  ++ V
Sbjct: 26  VLPIVQLGHPVLRQQAVAYENQLPTDLLEELLEAMRQTMYDAPGVGLAAPQVGIPLQIAV 85

Query: 61  I-DLQDHAHR------KNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           + DL            + P+ +    NP+ ++ S+  +V+ EGCLS   ++  V R A I
Sbjct: 86  LEDLYPIPEEAATMREREPLEYFEIFNPEYVSASEREAVFYEGCLSFDGFQGVVTRPADI 145

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  Y D + Q       G  A  +QHE DHL+G ++ID   
Sbjct: 146 SATYKDRDGQEITRSFSGWQARIVQHEADHLSGTVYIDKAE 186


>gi|15807421|ref|NP_296154.1| peptide deformylase [Deinococcus radiodurans R1]
 gi|23396556|sp|Q9RRQ4|DEF_DEIRA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|6460249|gb|AAF11975.1|AE002073_5 polypeptide deformylase [Deinococcus radiodurans R1]
          Length = 232

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 24/189 (12%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIG 53
             P+ ++ DPILRR +R +   ++          +  + D MLE M+   G+GLAA QIG
Sbjct: 21  VYPMRLYGDPILRRKARNLTAADTLHVPGFEPQTVREVADTMLETMFEERGVGLAAPQIG 80

Query: 54  VLYRLVVI-----DLQDHAHRKNPM--------VFINPKIITFSDDFS-VYQEGCLSIPD 99
           +  R+ V      D +++  ++ P+        V +NP +   +      YQEGCLSIP 
Sbjct: 81  LPVRMFVAVEYADDEEENEGQETPLRSRVLREYVMLNPVVKVINKKKDKSYQEGCLSIPG 140

Query: 100 YRAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              D V R+  + V Y D + Q + I A+  LA   QHE DHL+G LF+DHL     +  
Sbjct: 141 IYEDGVPRARQVRVDYTDLDGQPRSIEAEDYLARVFQHETDHLDGKLFLDHLPADITEDH 200

Query: 159 TKKMSKLVQ 167
            K + ++ Q
Sbjct: 201 RKDLLRIQQ 209


>gi|260551188|ref|ZP_05825391.1| peptide deformylase 2 [Acinetobacter sp. RUH2624]
 gi|260405793|gb|EEW99282.1| peptide deformylase 2 [Acinetobacter sp. RUH2624]
          Length = 160

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 92/158 (58%), Gaps = 8/158 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + IL+ ++ P+   ++NS+ +  L D M   M   +G+G+AA Q+ +  R+
Sbjct: 3   VVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISKRV 62

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A   + +V +NP+I+ FS++  + +EGCLS+PD R  V+R+  + V+
Sbjct: 63  IIVASRPNPRYPDAPEMDAVVMVNPEILEFSNEVCLGEEGCLSVPDERGQVERAEMVKVK 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y+    +       G  A  +QHE+DHLNGILF++ +S
Sbjct: 123 YLTLQGETIESVFHGFPARIVQHEIDHLNGILFVERIS 160


>gi|317471201|ref|ZP_07930569.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
 gi|316901307|gb|EFV23253.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA]
          Length = 153

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 7/151 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +    DPIL++  + + +++      +D++++ ++S  +G  LAA Q G+L R++
Sbjct: 1   MAVRKIRTGNDPILKKKCKTVPEVDDKARQQLDDLMDTLHSAENGAALAANQAGILRRMI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID     H    +  +NP I+  S       EGCLS P+      R A +TV  +D + 
Sbjct: 61  VID-----HEGYYLKLVNPVIVESSGSQECV-EGCLSFPNRFGKTIRPAKVTVEALDEHG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                   G +A C  HE+DHL+G +FID +
Sbjct: 115 HEVSYTVVGEMAKCFCHEIDHLDGEVFIDKV 145


>gi|119773777|ref|YP_926517.1| peptide deformylase [Shewanella amazonensis SB2B]
 gi|119766277|gb|ABL98847.1| Peptide deformylase [Shewanella amazonensis SB2B]
          Length = 174

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 5/152 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ I  DP+L + + P+   +  +  L   ++  M    G+G+AA QIGV  RL ++  +
Sbjct: 8   PIAITGDPVLYQKAAPVTVFDDSLERLSQTLMATMLQAKGVGIAAPQIGVSQRLFIVASR 67

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    +     PMV +NP +++ S ++   +EGCLS+P  R  + R  ++  ++ D   
Sbjct: 68  PNERYPDAPLMEPMVMVNPALLSGSSEWESSEEGCLSVPGKRLSIARHRWVEAKWQDLQG 127

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
                  DG +A   QHELDHL+GI  ++ ++
Sbjct: 128 NAYSGRLDGFIARIFQHELDHLDGITLLERVT 159


>gi|54024621|ref|YP_118863.1| peptide deformylase [Nocardia farcinica IFM 10152]
 gi|54016129|dbj|BAD57499.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
          Length = 190

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I  DP L   ++P+   + ++  L+D++ + + + +G GLAA QIG    + V
Sbjct: 1   MAIRPILIAGDPRLTTPAQPVTVFDDELAALVDDLFDTLAAAEGAGLAANQIGDPRAVFV 60

Query: 61  IDLQDHAHRKNPMVFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            DL DH HR    V +NP      +     D     EGCLS+P       R+    V  +
Sbjct: 61  YDLVDHGHR-YRGVVVNPVAETSALPETMPDPEGDLEGCLSVPGEWYPTGRADRARVTGL 119

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMIT 159
           D       +   G LA CLQHE DHL G L+++ L    +R  R MI 
Sbjct: 120 DATGAPITVEGTGYLARCLQHETDHLAGRLYLERLLGRHARAARRMIK 167


>gi|159899991|ref|YP_001546238.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893030|gb|ABX06110.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 175

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 13/178 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54
           M   PL+   +P+LR+ + P  +  + ++  ++++M + +         G G+AA QIGV
Sbjct: 1   MAVVPLIELGNPLLRQPATPFADPTSPEVARILNDMRDTLADMRQRIGYGRGIAAPQIGV 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           L RL++ID  D       +V +NP+   +S +     E C S P     V+R   +TV  
Sbjct: 61  LKRLILIDTPDTN-----LVLVNPRFERWSREEDERYESCFSFPGIWGLVQRPLGVTVVA 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQLRD 170
                + Q I A G L+  +QHE+DHL+G +++D    L     T++  K  + + R+
Sbjct: 116 YTLAGEEQRIEASGSLSRIIQHEMDHLDGFVWLDRGPDLHSLCTTQEYEKRYISRERE 173


>gi|320333260|ref|YP_004169971.1| peptide deformylase [Deinococcus maricopensis DSM 21211]
 gi|319754549|gb|ADV66306.1| Peptide deformylase [Deinococcus maricopensis DSM 21211]
          Length = 214

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 23/188 (12%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINS----------DIMNLIDNMLEVMYSTDGIGLAAVQI 52
             P+ ++ DPILR+ +R IE + +           +  +   MLE MY   G+GLAA Q+
Sbjct: 9   VYPIRLYGDPILRKKARAIEDLQAPLTIPGFAPAALAQVARTMLETMYDAHGVGLAAPQV 68

Query: 53  GVLYRLVV---IDLQDHAHRKNPM--------VFINPKIITFSDDFSV-YQEGCLSIPDY 100
           G+  R+ V       +   ++ P+        V INP +   +      YQEGCLSIP  
Sbjct: 69  GLGVRMFVAAEYADDEDEGQETPLRSRVLREFVAINPVLEVLNKKKDSHYQEGCLSIPGI 128

Query: 101 RAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             + VKR   + + Y++ + Q +++ A+  LA   QHE+DHL+G  F+D L     D   
Sbjct: 129 YEEGVKRDRAVRMTYLNLDGQRKVVEAEDYLARVFQHEVDHLDGRFFLDRLPAEVTDDHR 188

Query: 160 KKMSKLVQ 167
           K ++ + +
Sbjct: 189 KDLAAMQR 196


>gi|153953994|ref|YP_001394759.1| peptide deformylase [Clostridium kluyveri DSM 555]
 gi|219854608|ref|YP_002471730.1| hypothetical protein CKR_1265 [Clostridium kluyveri NBRC 12016]
 gi|146346875|gb|EDK33411.1| Hypothetical protein CKL_1369 [Clostridium kluyveri DSM 555]
 gi|219568332|dbj|BAH06316.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 147

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 95/152 (62%), Gaps = 6/152 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ + D +LR+ SR I+ IN  I+ L+D+M E +Y   G+GLAA Q+GVL R VV
Sbjct: 1   MALRNVIKYGDELLRKKSRKIDVINDRILTLLDDMEETLYKECGVGLAAPQVGVLKRAVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      INP+II +S+   +  EGCLSIP+ + +VKR   + V+ ++   +
Sbjct: 61  IDIGEGIFK-----LINPEII-YSEGSYIDVEGCLSIPEIQGEVKRPKKVKVKALNEKGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             II  + LLA    HE+DHL+GILF+D + +
Sbjct: 115 EVIIEGEDLLARAFCHEIDHLDGILFVDKMIK 146


>gi|168007592|ref|XP_001756492.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692531|gb|EDQ78888.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 191

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 18/164 (10%)

Query: 7   VIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-D 62
           V   DP+L + +  +++ N   S I   I++M++VM +  G+GLAA QIGV  +++V+ D
Sbjct: 1   VQAGDPVLHKPAEEVKRENIGSSLIEKTINDMVDVMRAGPGVGLAAPQIGVPLQIIVLED 60

Query: 63  LQDHAHRKNP-------------MVFINPKIITFSD-DFSVYQEGCLSIPDYRADVKRSA 108
            ++     +P             +V INPKI        + + EGCLS+  YRA V+R +
Sbjct: 61  TKELMSYTSPEECEAQQRSPFDLLVIINPKIEKKEGRGTAYFFEGCLSVEGYRALVERHS 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + V  +  + +   + A G  A  LQHE DHL G L++D + +
Sbjct: 121 EVEVTGLGRDGRPLHLTAKGWKARILQHEYDHLQGTLYVDKMVK 164


>gi|256789557|ref|ZP_05527988.1| peptide deformylase [Streptomyces lividans TK24]
          Length = 222

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++   +    ++ +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 29  PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 88

Query: 63  LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +  +          V +NP         + + EGCLS+P ++A V R A + +
Sbjct: 89  DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 148

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R  D + +       G  A  +QHE DHL+G L++D   
Sbjct: 149 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDRAE 187


>gi|18310615|ref|NP_562549.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110800596|ref|YP_696318.1| polypeptide deformylase [Clostridium perfringens ATCC 13124]
 gi|168207151|ref|ZP_02633156.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|168213602|ref|ZP_02639227.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|169342870|ref|ZP_02863901.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|23396560|sp|Q8XJX0|DEF2_CLOPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|18145296|dbj|BAB81339.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|110675243|gb|ABG84230.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|169299127|gb|EDS81199.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|170661437|gb|EDT14120.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|170714896|gb|EDT27078.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
          Length = 155

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V      L++VS P++ +N ++  LI ++ + + + +GIGLAA QI V  R+V 
Sbjct: 1   MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+  D     N  V INP++   S +     EGCLS   +   V+R   + ++ ++   +
Sbjct: 60  INFGDGE---NEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ++  A  LLA C  HE+DHL GI+++D    +
Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149


>gi|302555792|ref|ZP_07308134.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302473410|gb|EFL36503.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 214

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++  ++    ++ +   M +  G+GLAA Q+GV  R+ VI+
Sbjct: 25  PIVAAGDPVLRRGTEPYDGQLAPELLARFVEALRVTMRAAPGVGLAAPQVGVPLRIAVIE 84

Query: 63  LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +  +          V +NP         + + EGCLS+P ++A V R A + +
Sbjct: 85  DPAPVPEEVRLARGRVPLPFRVLVNPAYAPVGGARAAFFEGCLSVPGWQAVVARPAEVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              D + +       G  A  +QHE DHL+G+L++D   
Sbjct: 145 TGQDEHGRALDEVFTGWPARIVQHETDHLDGVLYLDRAE 183


>gi|212715793|ref|ZP_03323921.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661160|gb|EEB21735.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM
           16992]
          Length = 149

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 6/154 (3%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R    ++          
Sbjct: 2   LRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVGLRAFSYNIDGKIGY---- 57

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
             +NP +   S +     EGCLS+P      +R+ +  VR +D + +  ++   G++   
Sbjct: 58  -VLNPVLEETSGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGKTVVLEGHGIMGRM 115

Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LQHE DHL+G +++D L + +R    + M    +
Sbjct: 116 LQHETDHLDGHVYLDRLEKEERREAMRYMRNHRK 149


>gi|289773445|ref|ZP_06532823.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|289703644|gb|EFD71073.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 218

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++   +    ++ +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 25  PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84

Query: 63  LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +  +          V +NP         + + EGCLS+P ++A V R A + +
Sbjct: 85  DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R  D + +       G  A  +QHE DHL+G L++D   
Sbjct: 145 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDRAE 183


>gi|239626610|ref|ZP_04669641.1| peptide deformylase [Clostridiales bacterium 1_7_47_FAA]
 gi|239516756|gb|EEQ56622.1| peptide deformylase [Clostridiales bacterium 1_7_47FAA]
          Length = 153

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 7/156 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +    DPILR+  + ++ ++  I  L+D+M E ++ T +G  LAA Q+G+L RLV
Sbjct: 1   MAIRNIRYDNDPILRKRCKEVKTVDDKIRLLLDDMAETLHHTENGAALAANQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID  D+  +      +NP+II +S       EGCLS P+      R   +T++ +D N 
Sbjct: 61  VIDYCDYHLK-----LVNPQIIGYSG-VQECIEGCLSFPNRFVKTIRPQKVTIQSLDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +  II  +  +A C  HEL+HL+GI+F+D      R
Sbjct: 115 KEIIITGENEMAKCFCHELEHLDGIIFLDKAIEEVR 150


>gi|254422211|ref|ZP_05035929.1| peptide deformylase [Synechococcus sp. PCC 7335]
 gi|196189700|gb|EDX84664.1| peptide deformylase [Synechococcus sp. PCC 7335]
          Length = 176

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M K   +    DP+LR  +  +  +    +  LID ++ +    +G+G+AA Q+    +L
Sbjct: 1   MTKILKIAELGDPVLRSPADKVCDVHTPAVQTLIDQLISLTLERNGVGIAAPQVSHSLQL 60

Query: 59  VVIDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++  +      HA + +P   INP+I+ +SD  +   EGCLS+P  R  VKRS  I V 
Sbjct: 61  FIVASRPNLRYLHAPKMDPTAMINPQILHYSDAVTAGWEGCLSVPGMRGLVKRSKEIEVS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           Y D   Q Q       +A  +QHE DH+NG +F+D +  +
Sbjct: 121 YTDRYGQQQQQIFTDFVARIIQHEYDHINGKVFLDRIDSV 160


>gi|110801598|ref|YP_698920.1| polypeptide deformylase [Clostridium perfringens SM101]
 gi|110682099|gb|ABG85469.1| peptide deformylase [Clostridium perfringens SM101]
          Length = 155

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V      L++VS P++ +N ++  LI ++ + + + +GIGLAA QI V  R+V 
Sbjct: 1   MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+  D     N  V INP++I  S +     EGCLS   +   V+R   + ++ ++   +
Sbjct: 60  INFGDGE---NEYVLINPEVIGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ++  A  LLA C  HE+DHL GI+++D    +
Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149


>gi|320104581|ref|YP_004180172.1| peptide deformylase [Isosphaera pallida ATCC 43644]
 gi|319751863|gb|ADV63623.1| peptide deformylase [Isosphaera pallida ATCC 43644]
          Length = 230

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 8/155 (5%)

Query: 3   KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           ++P++    P LR+ +R +E           LI +M + +    G+GLA  QIGV  R++
Sbjct: 19  RRPILWLGHPALRQTARVVEPSQLKTDAFRRLIGDMAQTLEDEGGVGLAGPQIGVDQRVI 78

Query: 60  VIDL----QDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +       +D +   +P+  FINP I+  S       EGCLSIP   A V R   + + Y
Sbjct: 79  LAGAFPSERDPSRPNHPVRAFINPVIVARSSQVGAAYEGCLSIPGILARVVRPHAVEIEY 138

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +D NA  + + A+G LA  LQHE+DHL+G+L +DH
Sbjct: 139 LDLNAMPRRLRAEGFLARVLQHEIDHLDGVLIVDH 173


>gi|21219403|ref|NP_625182.1| peptide deformylase [Streptomyces coelicolor A3(2)]
 gi|23396576|sp|Q9RD27|DEF1_STRCO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|6562865|emb|CAB62674.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
          Length = 218

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++   +    ++ +   M++  G+GLAA Q+GV  R+ VI+
Sbjct: 25  PIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84

Query: 63  LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +  +          V +NP         + + EGCLS+P ++A V R A + +
Sbjct: 85  DPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R  D + +       G  A  +QHE DHL+G L++D   
Sbjct: 145 RAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDRAE 183


>gi|291435575|ref|ZP_06574965.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291338470|gb|EFE65426.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
          Length = 214

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           P+V   DP+LRR + P    +  +        ++ +   M++  G+GLAA Q+GV  R+ 
Sbjct: 25  PIVAAGDPVLRRGAEP---FDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIA 81

Query: 60  VID----LQDHAHRKNPMV------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           VI+    + +   R    V       +NP         + + EGCLS+P Y+A V R A 
Sbjct: 82  VIEDPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAE 141

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + +   D + +       G  A  +QHE+DHL+G+L++D    
Sbjct: 142 VRLTGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLDRAEP 184


>gi|90410436|ref|ZP_01218452.1| hypothetical polypeptide deformylase [Photobacterium profundum
           3TCK]
 gi|90328677|gb|EAS44961.1| hypothetical polypeptide deformylase [Photobacterium profundum
           3TCK]
          Length = 178

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
               ++   +P+LR  +  +   +IN  +  L+ ++ ++M S  G+G+AA Q+G   R  
Sbjct: 3   ASLEIIQLGNPLLRVPAEALSTTQINVTL-PLLASLEQIMLSHQGVGIAAPQVGESLRAF 61

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           ++     D   HA    P + INP+++  SD      EGCLSIP  RA + R   I V Y
Sbjct: 62  IVASRPNDRYPHAPLMEPTIMINPELLWHSDLMEKDWEGCLSIPGIRAKINRYTHIRVSY 121

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           ++             +A   QHELDHLNGI+F+D   +L
Sbjct: 122 LNVLGDVIETEFTDFIARIFQHELDHLNGIVFLDRADKL 160


>gi|319941618|ref|ZP_08015942.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
 gi|319804848|gb|EFW01702.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
          Length = 179

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 10/162 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           +   ++   +P+L + + P+       +  L+ +M + M++  G+G+AA Q+GV  R++ 
Sbjct: 1   MVLEVMRLGEPVLMKEALPVRDFGSPRLRKLVADMWDTMHAEGGVGIAAPQVGVSERIIC 60

Query: 61  IDLQ-----DHAHRKNPMVFINPK----IITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
              +       A      V INP     +   +DD+    EGCLS+P  R  V R+  I 
Sbjct: 61  FGFEASSRYPDAPAVPQTVLINPTVELLLEGTADDWEDGWEGCLSVPGMRGVVPRARRIR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                 + +     A+   A  +QHE DHL GI++   +   
Sbjct: 121 YTGFGLDGETIEREAEEFHARVVQHEFDHLKGIVYPMRIKDW 162


>gi|195952867|ref|YP_002121157.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932479|gb|ACG57179.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
          Length = 164

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 60/165 (36%), Positives = 102/165 (61%), Gaps = 7/165 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVV 60
           +   ++++P+P+L+  S+ + KI+ +I+  I+N+ E MYS D   G+A+ Q+GVL  +VV
Sbjct: 1   MIYEILVYPNPLLKEKSKDVNKIDDNIIKHIENLKETMYSKDFCTGIASSQVGVLQNIVV 60

Query: 61  IDLQ----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +D         +    +  INP II  S+D  +++EGCLS+P+Y A+++R   ++V+ +D
Sbjct: 61  MDASRFRKPPKNHHGLITLINPVII-KSEDSIIFREGCLSVPEYTANIQRYKHVSVKALD 119

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                 I+  +G  A   QHELDHLNGILF+D L+ L  ++  +K
Sbjct: 120 EKENEIILDLEGPEAVLFQHELDHLNGILFLDRLTSLD-NLFKRK 163


>gi|303243293|ref|ZP_07329698.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
 gi|302589164|gb|EFL59007.1| peptide deformylase [Acetivibrio cellulolyticus CD2]
          Length = 186

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 10/144 (6%)

Query: 14  LRRVSRPIEKINSDIMN-----LIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVIDLQDHA 67
           LR  SR I+K   ++        I ++ E +Y +  G+GLAA Q+GV  RLV ID+    
Sbjct: 21  LRNPSRQIQK--EELREQWFIDFIKDLFETLYYSPTGVGLAAPQVGVHIRLVAIDMDRDG 78

Query: 68  HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127
             KNP   INP     +D   +  E CLS+P +   V+R   I + Y D N +   +Y +
Sbjct: 79  --KNPFPLINPTYEAVNDSIVLSNESCLSVPGFVGKVQRHEKIKLTYWDVNGEEIELYVE 136

Query: 128 GLLATCLQHELDHLNGILFIDHLS 151
           G  A  +QHE+DHLNG+L+ID + 
Sbjct: 137 GFKAKVIQHEIDHLNGVLYIDRID 160


>gi|229547451|ref|ZP_04436176.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|307276655|ref|ZP_07557773.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|229307483|gb|EEN73470.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|306506765|gb|EFM75917.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|315028353|gb|EFT40285.1| peptide deformylase [Enterococcus faecalis TX4000]
 gi|315144145|gb|EFT88161.1| peptide deformylase [Enterococcus faecalis TX2141]
 gi|315159377|gb|EFU03394.1| peptide deformylase [Enterococcus faecalis TX0312]
          Length = 150

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/134 (41%), Positives = 79/134 (58%), Gaps = 4/134 (2%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
            ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI++ + +        I
Sbjct: 2   KAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGHFE---LI 58

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP II      S+  EGCLSIP+    V+R+  +TVRY D   +   + A G LA   QH
Sbjct: 59  NPVIIEKKG-TSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQH 117

Query: 137 ELDHLNGILFIDHL 150
           E+DHLNG LFID +
Sbjct: 118 EIDHLNGELFIDKM 131


>gi|168209296|ref|ZP_02634921.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|182626083|ref|ZP_02953844.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
 gi|170712476|gb|EDT24658.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|177908604|gb|EDT71125.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
          Length = 155

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V      L++VS P++ +N ++  LI ++ + + + +GIGLAA QI V  R+V 
Sbjct: 1   MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIKDLKDTLATVEGIGLAAPQIAVNKRVVY 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I+  D     N  V INP++   S +     EGCLS   +   V+R   + ++ ++   +
Sbjct: 60  INFGDGE---NEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ++  A  LLA C  HE+DHL GI+++D    +
Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149


>gi|220926453|ref|YP_002501755.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
 gi|219951060|gb|ACL61452.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
          Length = 165

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L+ +PDP LR+ + P    +  +  +  ++ E + +   IGL A   G+  R+ V
Sbjct: 1   MTILSLLRYPDPRLRQPAPPAALPDPGVSAVAADLAETLAAHGAIGLTAPHAGLPVRVTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I L   A       ++NP+++  S + + ++EG +++P    +V+R A + VR+ D +  
Sbjct: 61  IRLGPDAP---LATYVNPEVVWASSETARHREGSVAMPGVDEEVERPARVRVRFQDLDGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+G LA CLQHE+D L+G+ + + LSRLKR+ + K+  K+ + 
Sbjct: 118 PRQIAAEGFLAACLQHEIDQLDGVFWTERLSRLKRERLLKRFGKVQRG 165


>gi|134296033|ref|YP_001119768.1| peptide deformylase [Burkholderia vietnamiensis G4]
 gi|134139190|gb|ABO54933.1| peptide deformylase [Burkholderia vietnamiensis G4]
          Length = 177

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 6/164 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  ++ P+ + +  ++  ++ +M E M+  +G GLAA QIG+  ++++
Sbjct: 1   MIREILKMGDPRLLEIAEPVGQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V INPK+     D     EGCLS+P  R  V R A +     
Sbjct: 61  FGFGNNNRYPDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYVGY 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           D         A+G  A  +QHE DHL G L+   ++   R   T
Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTRFGFT 164


>gi|266624813|ref|ZP_06117748.1| peptide deformylase [Clostridium hathewayi DSM 13479]
 gi|288863310|gb|EFC95608.1| peptide deformylase [Clostridium hathewayi DSM 13479]
          Length = 149

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 7/154 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M    +    D ILR+  + +++++  I  ++++M + +++T  G  +AA Q+G+L RLV
Sbjct: 1   MAVLNMRYDGDEILRKKCKEVKEVDDRIREILNDMTDTLHATPNGAAIAANQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+         M  +NP I+  + +     EGCLS P+      R   + V+ +D N 
Sbjct: 61  VIDMG-----TGLMKLVNPVIVEQTGEQDCI-EGCLSFPEKYGRTIRPQTVIVKALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +   +     +A C  HELDHL+G+ F+D ++  
Sbjct: 115 EVVTLTGIDEMAKCFCHELDHLDGVCFVDKVTEW 148


>gi|117165081|emb|CAJ88634.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC
           23877]
          Length = 214

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 18/162 (11%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           P+V   DP+LRR + P    +  +        ++ +   M +  G+GLAA Q+GV  R+ 
Sbjct: 25  PIVAAGDPVLRRPAEP---FDGQLEPALLARFVEALRLTMRAAPGVGLAAPQVGVGLRIA 81

Query: 60  VIDLQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           VI+       +  +          V +NP         + + EGCLS+P ++A V R A 
Sbjct: 82  VIEDPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGPGRAAFYEGCLSVPGWQAVVARHAE 141

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + +   D + +      +G  A  +QHE DHL+G+L++D   
Sbjct: 142 VRLVARDEHGRAVDEVFEGWPARIVQHETDHLDGVLYLDRAE 183


>gi|262368804|ref|ZP_06062133.1| peptide deformylase [Acinetobacter johnsonii SH046]
 gi|262316482|gb|EEY97520.1| peptide deformylase [Acinetobacter johnsonii SH046]
          Length = 161

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 8/158 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + ILR  +  +   + NSD +M L   M+  M    G+G+AA Q+ +  R+
Sbjct: 3   VILPVAQRGEDILRLKAARVADAEFNSDWLMQLASAMIATMLERSGVGIAAPQVYISKRV 62

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A   + +V +NP+I+ FS   ++ +EGCLS+P+ R  V+R+  I V 
Sbjct: 63  IIVASRPNLRYPDAPEMDAVVMVNPEILEFSQATTLGEEGCLSVPNERGQVQRAQSIKVL 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y     +      +G  A  +QHE+DHLNGILF+D LS
Sbjct: 123 YHTLTGEVMESTFEGFPARIVQHEIDHLNGILFVDRLS 160


>gi|239927233|ref|ZP_04684186.1| peptide deformylase [Streptomyces ghanaensis ATCC 14672]
          Length = 205

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           P+V   DP+LRR + P    +  +        ++ +   M++  G+GLAA Q+GV  R+ 
Sbjct: 16  PIVAAGDPVLRRGAEP---FDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIA 72

Query: 60  VID----LQDHAHRKNPMV------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           VI+    + +   R    V       +NP         + + EGCLS+P Y+A V R A 
Sbjct: 73  VIEDPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAE 132

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + +   D + +       G  A  +QHE+DHL+G+L++D    
Sbjct: 133 VRLTGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLDRAEP 175


>gi|119383398|ref|YP_914454.1| peptide deformylase [Paracoccus denitrificans PD1222]
 gi|119373165|gb|ABL68758.1| Peptide deformylase [Paracoccus denitrificans PD1222]
          Length = 185

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 1/147 (0%)

Query: 3   KKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +P++I PDP LR +  P+ ++   +I  L  ++L  MY   G GLAA QIG  +R+ V+
Sbjct: 28  VRPILIHPDPALRVICEPVGRLGWDEIARLAADLLATMYDAGGRGLAAPQIGEGWRIFVM 87

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D         P V ++P+I     +    +E CLSIP     V R   I++R  D     
Sbjct: 88  DHGWKEGTPLPRVVMDPQIAPLGGEVGTMEEACLSIPGRPVSVTRPVTISMRCFDLTGTL 147

Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148
           Q++   G+ A   QHE DHL+G L +D
Sbjct: 148 QLLTLTGIEARIAQHETDHLDGRLILD 174


>gi|255629341|gb|ACU15015.1| unknown [Glycine max]
          Length = 223

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   + +L   +  +E I   +  +  +ID+M+ VM    G+GLAA QIG+  R++V++
Sbjct: 37  IVKAGEAVLHSRAEEVEAIEIKSERVQKIIDDMVRVMRKAPGVGLAAPQIGIPLRIIVLE 96

Query: 63  LQDH-----------AHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            +             A  + P   +V +NPK+   +   +++ EGCLS+P Y A V+R  
Sbjct: 97  DKIQYMAYYSNQELKAQDRTPFDLLVILNPKLKNTTTRTALFFEGCLSVPGYSAVVERYL 156

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + V   D   +   I A G  A  LQHE DHL+G L++D +  
Sbjct: 157 DVEVAGFDRYGEPIKINATGWQARILQHECDHLDGTLYVDKMVP 200


>gi|327441112|dbj|BAK17477.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris
           StLB046]
          Length = 163

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 6/153 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K +V  P  IL + +R +E I+ +I+ L+D++ + M   DG+G+AA QI V  R+ +
Sbjct: 1   MAIKEVVKNPANILSKKTREVEVIDENIIQLLDDLYDTMVENDGVGIAAPQINVDLRVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L +       +  INP ++    +     EGCLS PD    VKR  ++ +   D   +
Sbjct: 61  VELGEDI-----LEMINPIVLETRGE-EEDVEGCLSFPDLFGMVKRPTYVKIEASDREGR 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A+   A C+ HE+DHL+G+LF   ++R+
Sbjct: 115 IYELEAEDFEARCILHEIDHLDGVLFDSKMTRV 147


>gi|120597766|ref|YP_962340.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|146294101|ref|YP_001184525.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|120557859|gb|ABM23786.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|145565791|gb|ABP76726.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|319427442|gb|ADV55516.1| peptide deformylase [Shewanella putrefaciens 200]
          Length = 181

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 5/153 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              P+  + + ILR+ +  + + ++ + +L + M   M +  G+G+AA Q+     + ++
Sbjct: 12  APLPIAQYGEAILRQTAIEVRQFDAKLTHLAEQMSASMMAAKGVGIAAPQVHSPLAMFIM 71

Query: 62  DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
             + +A   +     P+V +NP+I+  SD+ +  +EGCLS+P+ R  + R   I VRY +
Sbjct: 72  ASRPNARYPDAPHMAPVVVVNPQILNVSDELNAGEEGCLSVPEQRFIIPRHDRIEVRYQN 131

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
              + Q     G +A   QHE DHL GI  ++ 
Sbjct: 132 LQGEWQQAVLSGFIARIFQHEFDHLQGITLLER 164


>gi|91205481|ref|YP_537836.1| polypeptide deformylase [Rickettsia bellii RML369-C]
 gi|91069025|gb|ABE04747.1| Polypeptide deformylase [Rickettsia bellii RML369-C]
          Length = 195

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 16/166 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  P+ +LR  S P+  I+S + + + +MLE MY+ +GIG++A+Q+G   R ++
Sbjct: 9   MPILKIIKTPNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALI 68

Query: 61  IDLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSI---PDYR---ADVKRSAFIT 111
           +D+    +   ++ P   INP++   S++  +  E CLSI           DV+R   I+
Sbjct: 69  VDIPKEENDQIKREPFFIINPEVNYLSEEKVILNEDCLSIRKEDGIAFIIGDVERPKNIS 128

Query: 112 VRYMDCNAQHQIIYADG-------LLATCLQHELDHLNGILFIDHL 150
           + Y+D     + +  +G         + CLQHELDHL+GILFID L
Sbjct: 129 ISYIDLEGNSKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRL 174


>gi|193699878|ref|XP_001950597.1| PREDICTED: peptide deformylase, mitochondrial-like [Acyrthosiphon
           pisum]
          Length = 213

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 16/161 (9%)

Query: 6   LVIFPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+LR  + P+  EKI   ++ NLI  M  +M  ++ IGLAA Q+G+ +++ VI 
Sbjct: 27  VVQIGDPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIH 86

Query: 63  LQDHAH-------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
               +H                  V+INP++   + +   + E C S   Y ADV R   
Sbjct: 87  FPRPSHYFSKEEILLKGMEHVENQVWINPELKVLNHEKVTFNESCASFKGYSADVPRYKR 146

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           + +  +D N + + + A    A  +QHE+DHLNG+++ D +
Sbjct: 147 VLLTGIDENGEKKTLDAKEWTARIVQHEMDHLNGVMYSDRM 187


>gi|325283926|ref|YP_004256467.1| Peptide deformylase [Deinococcus proteolyticus MRP]
 gi|324315735|gb|ADY26850.1| Peptide deformylase [Deinococcus proteolyticus MRP]
          Length = 220

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 24/173 (13%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQIG 53
             P+ ++ DP+LRR +RP++  ++          +  + D MLE M++  G+GLAA Q+G
Sbjct: 7   IYPIRLYGDPVLRRKARPLQHTDTLQVPGFAPQTLREVADTMLETMFAARGVGLAAPQVG 66

Query: 54  VLYRLVV-----IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQ-EGCLSIPD 99
           +  R+ V      + +++  ++ P+        V +NPK+   +      + EGCLSIPD
Sbjct: 67  LGVRMFVAVEYDDNEEENEGKETPLKSRVLREYVMLNPKLTVINKKKDKSETEGCLSIPD 126

Query: 100 YRAD-VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + V R+  + V Y D   Q Q + A+  LA   QHE DHL+G LF+DHL 
Sbjct: 127 IYEEGVPRARAVRVDYTDLEGQAQTVEAEDYLARVFQHENDHLDGKLFLDHLP 179


>gi|162457307|ref|YP_001619674.1| peptide deformylase [Sorangium cellulosum 'So ce 56']
 gi|161167889|emb|CAN99194.1| peptide deformylase [Sorangium cellulosum 'So ce 56']
          Length = 191

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +    +P+LR+ +R + +    +  +   ID+++E M   +G G+AA Q+ V  R
Sbjct: 1   MTLLKIAHIGNPVLRQRAREVTEEELSSPAMQAFIDDLVETMRDANGAGIAATQVHVPVR 60

Query: 58  LVVIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +  +++QD+            V +NP I   + +     EGCLS+P+ R  V R+  I +
Sbjct: 61  IFAVEVQDNPRYPYKPNIPLTVVVNPVIEPLTQETFENYEGCLSVPNLRGVVDRTTEIRL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D   +       GL A   QHE DH++G+LF+D +  
Sbjct: 121 TGLDREGRPIDRVVRGLSAGTFQHEKDHVDGVLFVDRVKD 160


>gi|170050375|ref|XP_001861255.1| peptide deformylase, mitochondrial [Culex quinquefasciatus]
 gi|167872016|gb|EDS35399.1| peptide deformylase, mitochondrial [Culex quinquefasciatus]
          Length = 236

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 25/170 (14%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ ++ +      + ++  L+  M++VM     +GLAA QIG+  R++V++ +
Sbjct: 42  QVGDPVLRQKAQLVPPEAVTSPEVRFLVQAMIDVMRKYSCVGLAAPQIGISLRILVMEFK 101

Query: 65  DH----------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           D                             +V INP++   + +   + E C S+  + A
Sbjct: 102 DKLRDEYTSAEYKIKEMDTLPLTVGRPTFMVVLINPELKVTNYEKKSFTEACASVKGFSA 161

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +V R + + +  +D N + + +   G  A   QHE+DHL+G+++ D + R
Sbjct: 162 EVPRYSEVLLSGLDENGKSKELTLKGWNARIAQHEMDHLDGVIYTDVMDR 211


>gi|270157701|ref|ZP_06186358.1| peptide deformylase [Legionella longbeachae D-4968]
 gi|269989726|gb|EEZ95980.1| peptide deformylase [Legionella longbeachae D-4968]
          Length = 172

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 8/150 (5%)

Query: 11  DPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +PILR+V+ PI   +     + +L+  M+++M     +G+AA QIGV  R++V       
Sbjct: 9   NPILRQVAEPINASEFGTPWLKSLVQTMIDIMAEKAAVGVAAPQIGVSKRVIVFGTSYTK 68

Query: 68  HRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            R+          INP +   S++     EGCL+  D   +V R+  I     D      
Sbjct: 69  RRQPEYPIPDTALINPTLKVLSEEIQTDYEGCLNCDDIMGEVPRAMEIEYSGFDIEGNPV 128

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152
              A GL A  LQHE+DHL+GILFID +  
Sbjct: 129 TKRARGLEARILQHEIDHLDGILFIDRIED 158


>gi|332654337|ref|ZP_08420081.1| peptide deformylase [Ruminococcaceae bacterium D16]
 gi|332517423|gb|EGJ47028.1| peptide deformylase [Ruminococcaceae bacterium D16]
          Length = 152

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 7/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + L    DPILR+  + + K++  I  L+D+ML+ ++ T +G  LAA Q+GVL RLV
Sbjct: 1   MATRFLRYDSDPILRKKCKAVLKVDDKIRQLLDDMLDTLHETENGAALAANQVGVLKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID  D   +      +NPK+I+ S       EGCLS P+      R   +T++ ++   
Sbjct: 61  VIDFNDTRLK-----LVNPKMISQSG-VQECVEGCLSFPNRFVKTIRPQKVTIQALNEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +  I+  +  +A C  HEL+HL+G++F+D 
Sbjct: 115 EEIIVDGEDEMAKCFCHELEHLDGMIFLDK 144


>gi|326783953|ref|YP_004324347.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
 gi|310003965|gb|ADO98360.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
          Length = 128

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/125 (40%), Positives = 78/125 (62%)

Query: 30  NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV 89
            L D M E M+++DGIGLAA Q+G+  R++V+D     H K   + +NPKI   S++  +
Sbjct: 3   ELYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVL 62

Query: 90  YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           + EGCLS+PD   +V R   I V + + + +++    DGL A  +QHE+DHL GILF+D+
Sbjct: 63  FDEGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDY 122

Query: 150 LSRLK 154
            +  +
Sbjct: 123 FNDKE 127


>gi|284042341|ref|YP_003392681.1| peptide deformylase [Conexibacter woesei DSM 14684]
 gi|283946562|gb|ADB49306.1| peptide deformylase [Conexibacter woesei DSM 14684]
          Length = 190

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 88/156 (56%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + ++ DP+LR  +RP+E+ +  + +LI  +  V+    G GLAA Q+GVL R+VV  + 
Sbjct: 22  EIRLWGDPVLRASARPVERFDDGLADLITRLRWVIDDATGAGLAAPQLGVLVRVVVYRVP 81

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           D        V +NP I+  S + + + EGCLS+P   A V+R A + V   D + + + I
Sbjct: 82  DEERDGPARVLVNPAIVVRSAERTTFVEGCLSMPGIVAPVERCANVVVHACDEHGRAREI 141

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A G  A+ LQHELDHL+G+L  D L+   R    +
Sbjct: 142 AAAGDHASVLQHELDHLDGVLLPDRLTPEHRRSYVR 177


>gi|294632567|ref|ZP_06711127.1| peptide deformylase [Streptomyces sp. e14]
 gi|292835900|gb|EFF94249.1| peptide deformylase [Streptomyces sp. e14]
          Length = 215

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LRR + P + ++  ++    +  +   M +  G+GLAAVQ+GV  R+ VI+
Sbjct: 25  PIVSAGDPVLRRPAEPYDGQLAPELLARFVQALRVTMRTAPGVGLAAVQVGVGLRIAVIE 84

Query: 63  LQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +  +          V +NP         + + EGCLS+P ++A V R A + +
Sbjct: 85  DPAPVPEEVRVARERVPQPFRVLVNPSYEPVGARRAAFFEGCLSVPGWQAVVARHAEVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R  D + +       G  A  +QHE DHL+G+L++D    
Sbjct: 145 RARDEHGRAVDEVFTGWPARIVQHETDHLDGVLYVDRAEP 184


>gi|293343343|ref|XP_002725458.1| PREDICTED: peptide deformylase-like protein-like [Rattus
           norvegicus]
 gi|293355230|ref|XP_001073696.2| PREDICTED: peptide deformylase-like protein [Rattus norvegicus]
          Length = 231

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E       ++  L++ +++VM     +GL+A Q+GV  +++V++  
Sbjct: 57  QVGDPVLRTVAAPVEPKQLAGPELQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLEFP 116

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D                      V +NP +         + EGC S+  + A V R   +
Sbjct: 117 DRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 176

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  +D   +  +  A G  A  +QHE+DHL+G LFID + 
Sbjct: 177 QISGLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKMD 217


>gi|297162485|gb|ADI12197.1| peptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 14/161 (8%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V    P+LRR + P E   S   +  L+  M E M +  G+GLAA QIG+  R+ VI+
Sbjct: 21  PIVAAGVPVLRRPALPYEGQLSAGQLDRLVRAMRETMQAAPGVGLAAPQIGIPLRIAVIE 80

Query: 63  LQ-------DHAHRKNPM---VFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFI 110
                      A  + P+   V +NP      D    + + EGCLS+P ++A V R   I
Sbjct: 81  DPAEVSAEVREARGRVPLPFRVLVNPSYEPVGDPGRRAAFFEGCLSVPGWQAVVARPERI 140

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +R  D   +       G  A  +QHE DHL+G L++D   
Sbjct: 141 RLRGQDERGRELDEEFAGWPARIVQHETDHLDGTLYLDRAE 181


>gi|29654308|ref|NP_820000.1| peptide deformylase [Coxiella burnetii RSA 493]
 gi|154707431|ref|YP_001424426.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|161830427|ref|YP_001596722.1| peptide deformylase [Coxiella burnetii RSA 331]
 gi|39931093|sp|Q83CV9|DEF1_COXBU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|29541575|gb|AAO90514.1| peptide deformylase [Coxiella burnetii RSA 493]
 gi|154356717|gb|ABS78179.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|161762294|gb|ABX77936.1| peptide deformylase [Coxiella burnetii RSA 331]
          Length = 170

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 7/167 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVID 62
           ++ +PDP L+  ++ +EK +  +  +ID M E  Y+           + +     + VID
Sbjct: 4   ILQYPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVID 63

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQH 121
                ++  P+  +N +II  S +    +EGC+S+       V R+A I VR  D   + 
Sbjct: 64  FSP--NKDQPLCLVNAEIIERSGE-HTEEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKP 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               ADG +A C+QHELDHLNGI+F+D LS LKR  I K++ KL + 
Sbjct: 121 VEFEADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKLRRQ 167


>gi|299771142|ref|YP_003733168.1| peptide deformylase [Acinetobacter sp. DR1]
 gi|298701230|gb|ADI91795.1| peptide deformylase [Acinetobacter sp. DR1]
          Length = 160

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 87/157 (55%), Gaps = 8/157 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + IL+ ++ P+   E  +  +  L   M   M   +G+G+AA Q+ +  R+
Sbjct: 3   VVLPVAKRGEDILKLIAAPVSANELNSDWLYQLAAAMQATMLERNGVGIAAPQVYISKRV 62

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A   + +V +NP+I+ FS++  + +EGCLS+PD R  V+R+  + V+
Sbjct: 63  IIVASRPNPRYPDAPEMDAVVMVNPEILEFSNETLLGEEGCLSVPDERGQVERAEMVKVK 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Y+    +       G  A  +QHE+DHLNG+LF++ +
Sbjct: 123 YLTLQGEAVETVFHGFPARIVQHEVDHLNGVLFVERI 159


>gi|299533459|ref|ZP_07046840.1| peptide deformylase [Comamonas testosteroni S44]
 gi|298718565|gb|EFI59541.1| peptide deformylase [Comamonas testosteroni S44]
          Length = 171

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 7/158 (4%)

Query: 9   FPDPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
             DP L R+++P+ + ++D ++L+   L   M++ +G GLAA QIG   ++VV    +  
Sbjct: 1   MGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEPN 60

Query: 68  HR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R          V INP I    ++  +  EGCLS+P  RA V R   +     D     
Sbjct: 61  PRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWNKVRYTGFDIYGDP 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
                +G  A  +QHE DHL G L+   +    R   T
Sbjct: 121 IDRTVEGFHARVVQHECDHLWGKLYPMRVRDFSRFGFT 158


>gi|302340678|ref|YP_003805884.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
 gi|301637863|gb|ADK83290.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
          Length = 174

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 7/152 (4%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVVI 61
            + ++ F DP LR +   +   +  + + ID +   ++    G  LAA QI +L ++VVI
Sbjct: 7   VETIIRFGDPRLRVLCSEVAVFHKGLHDKIDCIARTLHQHGGGAALAAPQIALLKQIVVI 66

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D     +       INP+I+  S   S+  EGCLS+P +   V+R   I V Y D   + 
Sbjct: 67  D-----YLGEYYELINPQIVEASGS-SIDYEGCLSLPGFWGQVERHQRIKVSYQDRFGEV 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             + A   +A C QHE+DHL+G+LFID +S  
Sbjct: 121 YSVEAHDRMARCFQHEIDHLSGVLFIDRMSDE 152


>gi|269955472|ref|YP_003325261.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304153|gb|ACZ29703.1| Peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
          Length = 223

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             P+V   DP+LR  + P   ++   +  L + M   M++  G+GLAA Q+G+   L V+
Sbjct: 29  VLPIVQSGDPVLRTPAAPYTGQLGDLLPRLAEVMRRTMHAAPGVGLAAPQVGIGLALAVV 88

Query: 62  DLQDHA---HRKNPM---VFINPKIITFSDD-------FSVYQEGCLSIPDYRADVKRSA 108
           + + +      + P+   +  NP     +++          + EGCLSI  + A V R  
Sbjct: 89  EDRGNESDPRERTPLPFRLLANPAYEPVAEEGPSGTLRRVPFFEGCLSIDGWHALVARHH 148

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + +   D +         G  A  +QHE DHL G L++DH   
Sbjct: 149 RVRLTGQDADGAPIDEVLTGWPARIIQHETDHLRGELYLDHAVP 192


>gi|194741016|ref|XP_001952985.1| GF17444 [Drosophila ananassae]
 gi|190626044|gb|EDV41568.1| GF17444 [Drosophila ananassae]
          Length = 238

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ + P+ +   ++ ++  +++ M+ V+   D +G+AA QIGV  R++ ++ +  
Sbjct: 55  GDPVLRQKAAPVPQEHILSPEVEAIVEKMVRVLRKYDCVGIAAPQIGVSLRIIAMEFKGS 114

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             ++ P               VFINP +   +     + EGC+S+  + ADV+R   +++
Sbjct: 115 IRKELPEAVYQARQMTELPLTVFINPVLTVTNYTKLKHPEGCMSVRGFSADVERFEGVSI 174

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + N     +   G  A   QHE+DHL+G L+ DH+ R
Sbjct: 175 SGSNGNGVQNELELSGWNARIAQHEMDHLDGKLYTDHMDR 214


>gi|157827157|ref|YP_001496221.1| polypeptide deformylase [Rickettsia bellii OSU 85-389]
 gi|157802461|gb|ABV79184.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389]
          Length = 187

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 16/166 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  P+ +LR  S P+  I+S + + + +MLE MY+ +GIG++A+Q+G   R ++
Sbjct: 1   MPILKIIKTPNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALI 60

Query: 61  IDLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSI---PDYR---ADVKRSAFIT 111
           +D+    +   ++ P   INP++   S++  +  E C+SI           DV+R   I+
Sbjct: 61  VDIPKEENDQIKREPFFIINPEVNYLSEEKVILNEDCISIRKEDGIAFIIGDVERPKNIS 120

Query: 112 VRYMDCNAQHQIIYADG-------LLATCLQHELDHLNGILFIDHL 150
           + Y+D     + +  +G         + CLQHELDHL+GILFID L
Sbjct: 121 ISYIDLEGNSKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRL 166


>gi|115757064|ref|XP_790987.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115961483|ref|XP_001180273.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 186

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 20/171 (11%)

Query: 1   MVKKP---LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54
           M   P   +    DP+LR  S P+   +    +  +LI  M+ VM  T G+GLAA QIGV
Sbjct: 1   MATPPYNHVTQVGDPVLRGKSDPVHPQDIRTKEFQDLIQKMVGVMRKTGGVGLAAPQIGV 60

Query: 55  LYRLVVIDLQDH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
             ++ V++  +                      VF+NP +   SD+  V  EGCLS+  +
Sbjct: 61  AQQVFVMEFTEKHMKGFSEEIQKAREMEVVPLKVFVNPSLKILSDNQVVLTEGCLSLTGF 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            A   R+  + +  ++   +       G  A  LQHE DHL G L+ID + 
Sbjct: 121 TAATPRAHEVEITGLNEKGEPVTWRVCGYPARILQHEYDHLQGTLYIDRMD 171


>gi|240140764|ref|YP_002965244.1| Peptide deformylase (PDF) (Polypeptide deformylase)
           [Methylobacterium extorquens AM1]
 gi|240010741|gb|ACS41967.1| Peptide deformylase (PDF) (Polypeptide deformylase)
           [Methylobacterium extorquens AM1]
          Length = 176

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +PL+ +PD  L R + P+   +  +       L  ++L+ + +   +GL A+ IG  
Sbjct: 1   MPVRPLIFYPDARLHRAAEPVSANSESLTGESWRALAADVLDTLGAVSAMGLTAIHIGRP 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R+VVI LQ         V+++P +   S + + + EG +S+P     V+R A + VRY 
Sbjct: 61  ERVVVIRLQPDEPHA---VYVDPVVAWSSPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D +       A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL
Sbjct: 118 DLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167


>gi|212212575|ref|YP_002303511.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
 gi|212010985|gb|ACJ18366.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
          Length = 170

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 7/167 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVID 62
           ++ +PDP L+  ++ +EK +  +  +ID M E  Y+           + +     + VID
Sbjct: 4   ILQYPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVID 63

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQH 121
                ++  P+  +N +II  S +    +EGC+S+       V R+A I VR  D   + 
Sbjct: 64  FSP--NKDQPLCLVNAEIIERSGE-HTEEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKP 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               ADG +A C+QHELDHLNGI+F+D LS LKR  I K++ KL + 
Sbjct: 121 VEFEADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKLRRQ 167


>gi|218507890|ref|ZP_03505768.1| peptide deformylase [Rhizobium etli Brasil 5]
          Length = 155

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 3/155 (1%)

Query: 10  PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           P P L+ V  P+   ++ +  L D++L  M +  G+G+ A  IGV  R++V++L      
Sbjct: 1   PHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLRVMVLELDRADGV 60

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
           +   +++NP I   S +  ++ EG +S+P    D+ R   I  RY D + +     A+  
Sbjct: 61  R---LYVNPAITWRSQETMIHAEGSVSMPGATDDITRPRAIRFRYQDVDGRMHDEAAEDF 117

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           LA C+QHE+D L+GI ++  LSRLKRD + KK  K
Sbjct: 118 LAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 152


>gi|46446175|ref|YP_007540.1| putative peptide deformylase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399816|emb|CAF23265.1| putative Peptide deformylase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 156

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/142 (37%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 24  INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----DHAHRKNPMVFINP 78
           I+  +  LI +M+E M++  GIGLAA Q+     L V  +               VFINP
Sbjct: 4   IDDALKQLIYDMVETMHTMKGIGLAAPQVHHSISLFVTCVPVKNKNGLWESGKDRVFINP 63

Query: 79  KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHEL 138
           +I++ S++   + EGCLSIP+   +V R A ITV+ +D           GL AT   HE 
Sbjct: 64  QILSMSEETQTFSEGCLSIPNLHMNVTRPAKITVQAVDLEGNLFEEIFTGLQATNFMHEY 123

Query: 139 DHLNGILFIDHLSRLKRDMITK 160
           DHLNGIL ID+ S  +R  + +
Sbjct: 124 DHLNGILIIDYYSLEERKSLEQ 145


>gi|262373169|ref|ZP_06066448.1| polypeptide deformylase [Acinetobacter junii SH205]
 gi|262313194|gb|EEY94279.1| polypeptide deformylase [Acinetobacter junii SH205]
          Length = 161

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 8/158 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + IL+  +  +   + NS+ ++ L   M   M   +GIG+AA Q+ +  R+
Sbjct: 3   VILPVAQRGEEILKIKAALVSDAEFNSEWLLQLASAMHATMLERNGIGIAAPQVYISKRV 62

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A   + +V +NP+I+ FS    + +EGCLS+PD R  V+R+  + VR
Sbjct: 63  IIVASRPNPRYPDAPEMDAVVMVNPEILEFSQATCLGEEGCLSVPDERGQVQRAQSVKVR 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y     +      DG  A  +QHE+DHL+G+LF++ LS
Sbjct: 123 YHTLQGEVIETTFDGFPARIVQHEVDHLDGVLFVERLS 160


>gi|225352153|ref|ZP_03743176.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157400|gb|EEG70739.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 149

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           LR    PI++I   + +L+ ++L+ +      GL+A QIGV  R    ++          
Sbjct: 2   LRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNINGKIGY---- 57

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
             +NP +     +     EGCLS+P      +R+ +  VR +D   +  ++   G++   
Sbjct: 58  -VLNPVLEETCGE-QYGDEGCLSVPGLWYKTRRADYARVRGIDLEGKTVVLEGRGIMGRM 115

Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           LQHE DHLNG +++D L + +R    + M    +
Sbjct: 116 LQHETDHLNGHVYLDRLEKEERREAMRYMRNHHK 149


>gi|195107440|ref|XP_001998320.1| GI23900 [Drosophila mojavensis]
 gi|193914914|gb|EDW13781.1| GI23900 [Drosophila mojavensis]
          Length = 234

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR  +   P+E ++S +I  ++D M+ V+   D +G+AA QIGV  R++ ++ +  
Sbjct: 51  GDPVLRDRAAEVPVECVDSKEIRAIVDRMVHVLRKYDCVGVAAPQIGVSLRIIAMEFRRG 110

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             ++ P               VFINP++   +     + EGC+S+  + A+V+R   + +
Sbjct: 111 IKKELPEAMYRARQMSELPLTVFINPRLSVTNYTKHKHPEGCMSVRGFSAEVERYEAVKL 170

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D   +   +   G  A   QHE+DHL+G L+ DH+ R
Sbjct: 171 SGLDREGEPLSLELSGWNARIAQHEMDHLDGKLYTDHMDR 210


>gi|116515231|ref|YP_802860.1| hypothetical protein BCc_313 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285373|sp|Q057D2|DEF_BUCCC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|58384664|gb|AAW72679.1| polypeptide deformylase [Buchnera aphidicola (Cinara cedri)]
 gi|116257085|gb|ABJ90767.1| polypeptide deformylase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 149

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 2/151 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPD  LR +S+PI+ IN     +I +M + MY+ +GIGLAA QI +L +++V
Sbjct: 1   MSIRKILQFPDYRLRLLSKPIKIINKKTKKIIYDMFDTMYANNGIGLAAPQINILKQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I         + +V INP I+  +  +    EGCLSIP   A +KRS+ I ++ ++   +
Sbjct: 61  I--SSLKPTMSELVLINPVILKKNKKYINTIEGCLSIPKKTAKIKRSSCIKIQAINTYGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + A  LL+ C+QHE+DHL G LFID+++
Sbjct: 119 SFTLTAKSLLSICIQHEIDHLIGKLFIDYIN 149


>gi|218532205|ref|YP_002423021.1| peptide deformylase [Methylobacterium chloromethanicum CM4]
 gi|254563274|ref|YP_003070369.1| peptide deformylase [Methylobacterium extorquens DM4]
 gi|218524508|gb|ACK85093.1| formylmethionine deformylase [Methylobacterium chloromethanicum
           CM4]
 gi|254270552|emb|CAX26555.1| Peptide deformylase (PDF) (Polypeptide deformylase)
           [Methylobacterium extorquens DM4]
          Length = 176

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 8/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +PL+ +PD  L R + P+      +       L  ++L+ + +   +GL A+ IG  
Sbjct: 1   MPVRPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRP 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R+VVI LQ         V+++P +   S + + + EG +S+P     V+R A + VRY 
Sbjct: 61  ERVVVIRLQPDEPHA---VYVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           D +       A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL
Sbjct: 118 DLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKL 167


>gi|171058566|ref|YP_001790915.1| peptide deformylase [Leptothrix cholodnii SP-6]
 gi|170776011|gb|ACB34150.1| peptide deformylase [Leptothrix cholodnii SP-6]
          Length = 178

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R+++P+ + +  ++  L+ ++ + M + +G G+AA QIGV   +V
Sbjct: 1   MPVRTILKMGDPRLLRIAQPVRRFDTPELHQLVQDLRDTMAAANGAGIAAPQIGVDLAVV 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V +NP+I+  SDD     EGCLS+P  R  V R   I    
Sbjct: 61  IFGSAHNPRYPDAPPVPATVLVNPQIVALSDDEEDGWEGCLSVPGLRGVVPRCTRIRYSG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            D   Q     ADG  A  +QHE DHL G L+   +    R   T+ +
Sbjct: 121 FDPVGQLIEREADGFHARVVQHECDHLIGKLYPMRVRDFSRFGYTEVL 168


>gi|15615221|ref|NP_243524.1| peptide deformylase [Bacillus halodurans C-125]
 gi|17432952|sp|Q9K9I9|DEF_BACHD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|10175279|dbj|BAB06377.1| formylmethionine deformylase [Bacillus halodurans C-125]
          Length = 182

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 20/175 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K +V   +P+LR V++P+   ++ +       MLE + ++             G+GLA
Sbjct: 3   TMKDIVREGNPVLREVAKPVPVPLSDEDKQTAKRMLEFLINSQNPEIAEKYSLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIP-DYRADVK 105
           A QIG+  +++ +   D   ++  +V  NPKII+ S + +     EGCLS+  + +  V 
Sbjct: 63  APQIGLSKQMIAVHTTDENEKEYSLVLFNPKIISESVEMTHLEGGEGCLSVDREVQGIVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRD 156
           R A ITV+ ++ N +   +   G  A   QHE+DHLNGI+F D +       KR+
Sbjct: 123 RHARITVKAINENNEEVRLKLKGFPAIVFQHEIDHLNGIMFYDRIEGWVDPYKRE 177


>gi|251771507|gb|EES52084.1| Polypeptide deformylase [Leptospirillum ferrodiazotrophum]
          Length = 175

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV   D +LR  S P++    ++  ++ ++ + + +  G+ +AA QIGV  RL V
Sbjct: 1   MSVRPLVSHRDTVLRIASEPVDPCAPEVRQVVQDLFDTLATQKGVAMAAPQIGVAMRLFV 60

Query: 61  IDLQDHAHRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            DL+    +  P    + INP I        V  EGCLS P     ++R   + V     
Sbjct: 61  FDLKRPREKGGPPTRGLLINPTIERRFGSIPVI-EGCLSFPGLDLSIRRPEGVVVSGYGL 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           + +  ++   GL A  ++HE DHL G L  D  + L
Sbjct: 120 DGKKVVLEGGGLFARMVEHETDHLEGRLLPDRQNGL 155


>gi|330952315|gb|EGH52575.1| peptide deformylase [Pseudomonas syringae Cit 7]
          Length = 119

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/119 (47%), Positives = 78/119 (65%), Gaps = 2/119 (1%)

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
            Q+ V  R+VV+DL +   R  P VFINP+I   +D+   YQEGCLS+P +  +V R   
Sbjct: 1   TQVNVHKRVVVMDLSE--DRSEPRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQK 58

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + V+ +D + +   + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 59  VRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 117


>gi|124359186|gb|ABD28402.2| Formylmethionine deformylase [Medicago truncatula]
          Length = 266

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           +V   DP+L   +R ++  +INSD I  +ID M+ VM +  GI L+A +IG+  R++V+ 
Sbjct: 67  IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 126

Query: 62  ----DLQDHAHRKNP---------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
               +L ++    N          +V +NPK+   S+   ++ EGCLS+  ++A V+R  
Sbjct: 127 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 186

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + V   D   +   I A G  A  LQHE DHL+G L++D +  
Sbjct: 187 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVP 230


>gi|226952063|ref|ZP_03822527.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244]
 gi|226837220|gb|EEH69603.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244]
          Length = 163

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 8/158 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + IL   +  +   + NS+ ++ L   M   M   +G+G+AA Q+ +  R+
Sbjct: 5   VVLPVAQRGEEILELKAAFVADGEFNSEWLLQLASAMHATMLERNGVGIAAPQVYISKRV 64

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A   + +V +NP+I+ FS    + +EGCLS+PD R  V+R+  I VR
Sbjct: 65  IIVASRPNPRYPDAPEMDAVVMVNPEILEFSQTTCLGEEGCLSVPDQRGFVERAQTIKVR 124

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y     +      +G  A  +QHE+DHL+G+LF++ +S
Sbjct: 125 YYTLQGEVVETTFEGFPARIVQHEVDHLDGVLFVERMS 162


>gi|117919351|ref|YP_868543.1| peptide deformylase [Shewanella sp. ANA-3]
 gi|117611683|gb|ABK47137.1| peptide deformylase [Shewanella sp. ANA-3]
          Length = 176

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL++ +  +   +  + +L   M+  M    G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILKQQADEVRDFDEKLSHLASQMVASMVEAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    +     P+V +NP+I++ S +    +EGCLS+P  R  + R   I VRY D   
Sbjct: 75  PNERYPDAPLMDPVVVVNPQILSASAELVSGEEGCLSVPGQRFSIWRHQTIVVRYQDLAG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
             Q     G +A   QHE DHL GI  ++     ++ ++ ++
Sbjct: 135 HWQQTELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMARR 176


>gi|113971372|ref|YP_735165.1| peptide deformylase [Shewanella sp. MR-4]
 gi|113886056|gb|ABI40108.1| peptide deformylase [Shewanella sp. MR-4]
          Length = 181

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 5/150 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL+  +  +   ++ +  L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIAVVGEAILKEQAVEVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    +     P+V +NP+I++ S D    +EGCLS+P  R  + R   I VRY +   
Sbjct: 75  PNERYPDAPLMDPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLAG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           Q Q     G +A   QHE DHL GI  ++ 
Sbjct: 135 QWQRSELTGFIARIFQHEFDHLQGITLLER 164


>gi|225706662|gb|ACO09177.1| Peptide deformylase, mitochondrial precursor [Osmerus mordax]
          Length = 248

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  + P++    + S++  +I  M++VM     +GL+A Q+GV  R++ ++  
Sbjct: 74  QVGDPVLRSHAAPVDPSAVLGSEVQEVIGAMVKVMRKLQCVGLSAPQVGVPLRILALEFP 133

Query: 65  DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   +                  VFINP++        ++QE C SI  + A V R   +
Sbjct: 134 ESMLKDVSPAAREARGVAVVPLRVFINPQLRVLDRRTVLFQEACESISGFSARVPRYLEV 193

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V  ++  A+       G  A  LQHE+DHL+G+L+IDH+ 
Sbjct: 194 EVSGLNEKAEPVTWEVSGWPARILQHEMDHLDGVLYIDHMD 234


>gi|262279936|ref|ZP_06057721.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202]
 gi|262260287|gb|EEY79020.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202]
          Length = 160

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 85/157 (54%), Gaps = 8/157 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+    + IL+ ++ P+   E  +  +  L   M   M   +G+G+AA Q+ +  R+
Sbjct: 3   VVLPVAKRGEDILKLIAAPVSSSELNSDWLYGLAAAMHATMLERNGVGIAAPQVYISKRV 62

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A   + +V +NP+I+ FS +  + +EGCLS+PD R  V+R+  + V+
Sbjct: 63  IIVASRPNPRYPDAPEMDAVVMVNPEILEFSSETLLGEEGCLSVPDERGQVERAEMVKVK 122

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           Y     +       G  A  +QHE+DHLNG+LF++ +
Sbjct: 123 YSTLQGEFVETIFHGFPARIVQHEVDHLNGVLFVERI 159


>gi|264679313|ref|YP_003279220.1| peptide deformylase [Comamonas testosteroni CNB-2]
 gi|262209826|gb|ACY33924.1| peptide deformylase [Comamonas testosteroni CNB-2]
          Length = 173

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 7/153 (4%)

Query: 8   IFPDPILRRVSRPIEKINSDIMNLIDNMLE-VMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
              DP L R+++P+ + ++D ++L+   L   M++ +G GLAA QIG   ++VV    + 
Sbjct: 2   KMGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEP 61

Query: 67  AHR------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             R          V INP I    ++  +  EGCLS+P  RA V R   +     D    
Sbjct: 62  NPRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWNKVRYTGFDIYGD 121

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                 DG  A  +QHE DHL G L+   +   
Sbjct: 122 PIDRTVDGFHARVVQHECDHLWGKLYPMRVRDF 154


>gi|162455696|ref|YP_001618063.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56']
 gi|161166278|emb|CAN97583.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56']
          Length = 203

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 25/175 (14%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P+V+    +LR+ + P+         + +L+  M+ VM    G+GLAA QIGV  +
Sbjct: 1   MELPPIVLAGRAVLRKPAAPVPPEEIGTKRLKHLVSTMVSVMRKAPGVGLAAPQIGVDQQ 60

Query: 58  LVVI-DLQDHAHRKNP-------------MVFINPKII--------TFSDDFSVYQEGCL 95
           ++V+ D ++   R  P              V INP +               + + EGCL
Sbjct: 61  VIVLEDSEELMSRLTPGQRAERGRVPFRLRVIINPTLRVLAPSLPDAAGAGRATFFEGCL 120

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           S+P Y A V+R   + V  +D + +     A G  A  LQHE+DHL G L++D +
Sbjct: 121 SVPGYMALVERDLSVEVSGVDEDGKEVRWEATGWPARILQHEVDHLRGTLYVDRM 175


>gi|157127011|ref|XP_001654759.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes
           aegypti]
 gi|108884464|gb|EAT48689.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes
           aegypti]
          Length = 243

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSR--PIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +   P+E +   ++  L+ +M+ VM   D +GLAA QIG+  +++V++ +D 
Sbjct: 59  GDPVLRQTAAMVPVEAVTSPEVKYLVKHMVHVMRKYDCVGLAAPQIGISLKILVMEFEDR 118

Query: 67  AHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             +                  V INP++   + +   + E C S+  Y  +V R A + +
Sbjct: 119 LKKHYTNAEYKIKEMETLPLTVMINPEMKITNYEKISFPESCASVKGYSGEVARYAGVLL 178

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D N Q + +   G  A   QHE+DHLNG+++ D + R
Sbjct: 179 SGLDENGQSKEMELKGWNARIAQHEMDHLNGVVYTDVMKR 218


>gi|149919087|ref|ZP_01907571.1| putative polypeptide deformylase protein [Plesiocystis pacifica
           SIR-1]
 gi|149820017|gb|EDM79438.1| putative polypeptide deformylase protein [Plesiocystis pacifica
           SIR-1]
          Length = 192

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 9/161 (5%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M   + +     P+LR+V+R +        +I   ID+++  M   +G GLAA Q+    
Sbjct: 1   MATIRAIARVGAPVLRQVAREVSPEELATPEIQGFIDDLVATMRHANGAGLAANQVFEPI 60

Query: 57  RLVVIDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           ++  +++Q      +       V +NPK+    DD     EGCLS+PD R  V+R A + 
Sbjct: 61  QICALEVQSNPRYPYKPNIPLTVLVNPKLTPLGDDSFANYEGCLSVPDLRGVVRRHARLR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V+ +D           G+ A   QHE+DHL G LF+D +  
Sbjct: 121 VQALDREGNSLDFETAGVTAGTYQHEVDHLRGKLFLDRVED 161


>gi|167957315|ref|ZP_02544389.1| peptide deformylase [candidate division TM7 single-cell isolate
           TM7c]
          Length = 211

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIG 53
           M K+ ++  P+  LR+ S+ I  I  ++  LI +M        E         LAAVQ+ 
Sbjct: 21  MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 80

Query: 54  VLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            L R+V++  + D+    +    INP+II +  + +   EGCLS+      V R   + V
Sbjct: 81  KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 140

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           + ++ + +   I A+G LA  LQHE+DH NGI+FIDH+ + K+D   K
Sbjct: 141 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 187


>gi|294651129|ref|ZP_06728464.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
 gi|292822961|gb|EFF81829.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
          Length = 163

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 8/158 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           V  P+      IL   +  +   + NS+ ++ L   M   M   +G+G+AA Q+ +  R+
Sbjct: 5   VVLPVAQRGKEILELKAAFVADGEFNSEWLLQLASAMHATMLERNGVGIAAPQVYISKRV 64

Query: 59  VVIDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +++  + +     A   + +V +NP+I+ FS    + +EGCLS+PD R  V+R+  I VR
Sbjct: 65  IIVASRPNPRYPDAPEMDAVVMVNPEILEFSQQTCLGEEGCLSVPDQRGVVERAQTIKVR 124

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           Y     +      +G  A  +QHE+DHL+G+LF++ +S
Sbjct: 125 YYTLQGEVVETTFEGFPARIVQHEVDHLDGVLFVERMS 162


>gi|260905538|ref|ZP_05913860.1| peptide deformylase [Brevibacterium linens BL2]
          Length = 221

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DPILR+ +RP +    ++++  L + M   M +  G+GLA  Q+G+   + V +
Sbjct: 27  PIVEAGDPILRQTTRPFDGQVDDAELAQLAEVMRATMLAAPGVGLAGPQVGIGLSMFVAE 86

Query: 63  LQDHAHRK----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +             V +N +    + +   + EGCLSIP Y+A V R   I +
Sbjct: 87  DPGSLDPETAEVRQRSPMPLRVVLNAEYTPATSENVAFFEGCLSIPGYQAVVARPRSIEL 146

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +D N         G  A  + HE DHL+GI+++D   
Sbjct: 147 TGVDLNGTPIAEVVAGWSARIVAHETDHLDGIMYLDKAE 185


>gi|160876705|ref|YP_001556021.1| peptide deformylase [Shewanella baltica OS195]
 gi|160862227|gb|ABX50761.1| peptide deformylase [Shewanella baltica OS195]
 gi|315268905|gb|ADT95758.1| peptide deformylase [Shewanella baltica OS678]
          Length = 185

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    +     P+V +NP+II  S +    +EGCLS+P  R ++ R   I VRY +   
Sbjct: 75  PNERYPDAPNMAPVVVVNPQIIHASSELVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           + Q     G +A   QHE DHL GI  ++ 
Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLER 164


>gi|224011581|ref|XP_002295565.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583596|gb|ACI64282.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 192

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 5/166 (3%)

Query: 6   LVIFPDPILRRV-SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           +  +P P LRRV + PI + +         ML +MY + G+GLAA QIG+   + V +  
Sbjct: 15  ITEYPRPALRRVPNTPISQFDDAFQTKAKEMLMIMYESKGVGLAAPQIGLNENVFVYNPS 74

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI--PDYRADVKRSAFITVRYMDCNAQHQ 122
           D  + +   +  NPKI  +S++  V QEGCLS+   +    V RSA+I   Y +   Q  
Sbjct: 75  DSKNME--RIVCNPKITKYSEEVIVEQEGCLSMRSDEVAGQVARSAWIECEYENEEGQKV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                   A   QHE DHL GIL  D      R+   + ++ L+ L
Sbjct: 133 RRRLKDFEARVFQHEYDHLKGILCYDRFPPEDREAAQENINTLLGL 178


>gi|168014244|ref|XP_001759662.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689201|gb|EDQ75574.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 194

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 18/163 (11%)

Query: 8   IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DL 63
              DP+L   +  + + +   + I   I++M++VM +  G+GLAA QIG+  +++V+ D 
Sbjct: 3   QAGDPVLHEPAEEVMREDIGSARIEKAINDMVDVMRAGPGVGLAAPQIGIPLQIIVLEDT 62

Query: 64  QDHAHRKNP-------------MVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           ++     +P             +V INPK+    S   + + EGCLS+  +RA V+R   
Sbjct: 63  KELMSYTSPEECEAQQRTPFDLLVIINPKLEMKASGGTAFFFEGCLSVAGHRALVERHLE 122

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + V  +  + Q     A G  A  LQHE DHL G+L++D + +
Sbjct: 123 VEVTGLGRDGQPLHFTAKGWKARILQHEYDHLQGLLYVDRMVK 165


>gi|124485039|ref|YP_001029655.1| peptide deformylase [Methanocorpusculum labreanum Z]
 gi|124362580|gb|ABN06388.1| peptide deformylase [Methanocorpusculum labreanum Z]
          Length = 157

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+L   +  ++ I    + ++ NM + M     IGL+A QIGV  RL ++
Sbjct: 1   MICEIRKYGDPVLFLHAETVQNIGPLELEILTNMWDTMIHNKCIGLSAPQIGVSKRLFIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +      +       NP+++          EG   IP  +  V+R   IT RY+D + + 
Sbjct: 61  NAGGVTIKGA-----NPEVL-KEGALVEEMEGSPCIPGIQRPVRRPGKITCRYLDISGET 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                 G+ A    HE DH  GIL++DHL  +++ MI K + K
Sbjct: 115 IETELKGIAARAFLHEKDHHEGILYLDHLKPIQKRMILKSLEK 157


>gi|332669559|ref|YP_004452567.1| peptide deformylase [Cellulomonas fimi ATCC 484]
 gi|332338597|gb|AEE45180.1| Peptide deformylase [Cellulomonas fimi ATCC 484]
          Length = 321

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 3   KKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           K P+V    P+LR  + P +    + ++ +L+  M   M++  G+GLAA QIG+   + V
Sbjct: 30  KVPIVQAGHPVLRAQALPYDGQLADDELESLVHVMRATMHAAPGVGLAAPQIGLPVAVAV 89

Query: 61  IDLQDHA-------HRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           ++              + P+   V +NP+     D+   + EGCLS+  Y+A V R   +
Sbjct: 90  LEDSGPPDGDVAQVRERAPLEFRVLVNPRYAAVDDERRAFYEGCLSVVGYQAVVARPRRV 149

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +   D   +       G  A  +QHE DHL G+L++D   
Sbjct: 150 HLVGADERGRPLDEVLTGWPARIVQHETDHLGGVLYLDRAE 190


>gi|223043772|ref|ZP_03613815.1| polypeptide deformylase [Staphylococcus capitis SK14]
 gi|222442869|gb|EEE48971.1| polypeptide deformylase [Staphylococcus capitis SK14]
          Length = 162

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    P+L++ S+ + + +  + +L+ ++ + +Y  +   ++A QIGV  R+ +
Sbjct: 1   MTVKKLVKSTHPLLKKESKTVNQYDDQLKSLLKDLEDTLYEEEAAAISAPQIGVNQRVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  INP I ++SD+     EG +S+P+   +V RS  I ++  D N  
Sbjct: 61  IDM----ELEGLLQLINPVIKSYSDEEITDLEGSVSLPNVFGEVTRSKMIVLQCNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DHLNGILF D  +R+
Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTDKANRI 149


>gi|114778706|ref|ZP_01453518.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1]
 gi|114551068|gb|EAU53630.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1]
          Length = 169

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 90/159 (56%), Gaps = 4/159 (2%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDL 63
            ++  PD  LR+V   +    SD+      +  VM +  G +G+AA QIG   R++VID 
Sbjct: 11  DILKHPDERLRQVCPDVTDFGSDLEARFAQLDAVMRAAPGGVGIAAPQIGWQQRMIVIDC 70

Query: 64  QDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++     + N +++++  +I   +  ++ +EGCLS+PD+ A V+R+  + V Y D +   
Sbjct: 71  RESLRPCKNNGLLWMSNPVIESVEGKALGREGCLSVPDWVAMVERARSLQVSYDDVHGDR 130

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             + + G  A  +QHELDHL+GILFID +    RD++ +
Sbjct: 131 LSLESTGFEARVIQHELDHLDGILFIDRVVS-ARDLVRR 168


>gi|195499829|ref|XP_002097113.1| GE24678 [Drosophila yakuba]
 gi|194183214|gb|EDW96825.1| GE24678 [Drosophila yakuba]
          Length = 238

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  + K    + ++  +++ M++V+   D +G+AA QIGV  R++ ++ +  
Sbjct: 55  GDPVLRQQAAVVPKEHLDSPELKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGR 114

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             ++ P               VFINP +   +     + EGC+S+  Y A+V+R   + +
Sbjct: 115 IRKELPEAVYQTRQMSELPLTVFINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGVKL 174

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 175 TGLDQQGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|237745527|ref|ZP_04576007.1| peptide deformylase [Oxalobacter formigenes HOxBLS]
 gi|229376878|gb|EEO26969.1| peptide deformylase [Oxalobacter formigenes HOxBLS]
          Length = 174

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++      L R S P+ + N  ++  L+ +M E M +  G GLAA QIGVL R+V
Sbjct: 1   MTVRKILKMGHSRLLRESEPVREFNTPELDELVSDMFETMQAAQGAGLAAPQIGVLKRVV 60

Query: 60  VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +    ++            V INP I   +D+     EGCLSIP  R  V R A I    
Sbjct: 61  IFGYDENNRYPEAPPVPETVLINPVIRPLTDEIDEGWEGCLSIPGMRGVVPRWARIHYEG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            D   +     A+G  A  +QHE DHL+GIL+   +  L
Sbjct: 121 FDQFGKRISRDAEGFHARVVQHECDHLDGILYPMRMLDL 159


>gi|195157966|ref|XP_002019865.1| GL12632 [Drosophila persimilis]
 gi|194116456|gb|EDW38499.1| GL12632 [Drosophila persimilis]
          Length = 196

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 20/171 (11%)

Query: 1   MVKKPLVIF---PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54
           M   P + F    DP+LR+++  +        +I  ++D M++V+   D +G+AA Q+GV
Sbjct: 1   MSVPPYLHFTQIGDPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGV 60

Query: 55  LYRLVVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDY 100
             R++V++ ++    +                 VFINP++   S   + + EGC+S+  Y
Sbjct: 61  PLRIIVMEFREGKQEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGY 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            A V+R   + ++ +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 121 SAQVERYERVRIKGIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRMD 171


>gi|54294000|ref|YP_126415.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens]
 gi|53753832|emb|CAH15298.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens]
 gi|307609830|emb|CBW99347.1| hypothetical protein LPW_11251 [Legionella pneumophila 130b]
          Length = 172

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 10/151 (6%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DPILR+ + PI +    +S +  LI  M  +M     +G+AA QIG+  R++V    D+ 
Sbjct: 9   DPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFG-TDYT 67

Query: 68  HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R+ P         INP +   S +     EGCL+  +   +V R+  I     D +   
Sbjct: 68  KRRKPEYPIPDTALINPSLRILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNR 127

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               A GL A  LQHE+DHL+G LF+D +  
Sbjct: 128 ITKKASGLEARILQHEIDHLDGFLFLDRVED 158


>gi|114046443|ref|YP_736993.1| peptide deformylase [Shewanella sp. MR-7]
 gi|113887885|gb|ABI41936.1| peptide deformylase [Shewanella sp. MR-7]
          Length = 181

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 5/150 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL+  +  +   ++ +  L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIAVVGEAILKEQAIVVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +         NP+V +NP+I++ S D    +EGCLS+P  R  + R   I VRY +   
Sbjct: 75  PNERYPDAPLMNPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLAG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           Q Q     G +A   QHE DHL GI  ++ 
Sbjct: 135 QWQRSELTGFIARIFQHEFDHLQGITLLER 164


>gi|323486114|ref|ZP_08091445.1| polypeptide deformylase [Clostridium symbiosum WAL-14163]
 gi|323400681|gb|EGA93048.1| polypeptide deformylase [Clostridium symbiosum WAL-14163]
          Length = 150

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 7/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +    D ILR+  + +++++  I  ++D+ML+ +  T +G  LAA Q+G+L RLV
Sbjct: 1   MAIRQMRYNDDEILRKKCKEVKEVDDKIRVMLDDMLDTLRHTENGAALAANQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VI      +    +  +NPKII  S       EGCLS P    +  R   +TV+ +D   
Sbjct: 61  VI-----EYCGELLKLVNPKIIGRSG-TQECIEGCLSFPGKFVNTIRPQKVTVQALDEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           Q  I+  +G +A C  HEL+HL+G +F+D 
Sbjct: 115 QEVILTGEGEMAKCYCHELEHLDGEIFLDK 144


>gi|125778496|ref|XP_001360006.1| GA16218 [Drosophila pseudoobscura pseudoobscura]
 gi|54639756|gb|EAL29158.1| GA16218 [Drosophila pseudoobscura pseudoobscura]
          Length = 196

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 20/171 (11%)

Query: 1   MVKKPLVIF---PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54
           M   P + F    DP+LR+++  +        +I  ++D M++V+   D +G+AA Q+GV
Sbjct: 1   MSVPPYLHFTQIGDPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGV 60

Query: 55  LYRLVVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDY 100
             R++V++ ++    +                 VFINP++   S   + + EGC+S+  Y
Sbjct: 61  PLRIIVMEFREGKQEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGY 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            A V+R   + ++ +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 121 SAQVERYDRVRIKGIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRMD 171


>gi|153001985|ref|YP_001367666.1| peptide deformylase [Shewanella baltica OS185]
 gi|151366603|gb|ABS09603.1| peptide deformylase [Shewanella baltica OS185]
          Length = 185

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHCPLALFIMASR 74

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    +     P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY +   
Sbjct: 75  PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           + Q     G +A   QHE DHL GI  ++ 
Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLER 164


>gi|284117858|ref|ZP_06386753.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829473|gb|EFC33840.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 160

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 4/139 (2%)

Query: 18  SRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74
           + P++     +      ID+M E M + +GIGLAA Q+    +L+V+            V
Sbjct: 2   AEPVDPAIIPSRAYQQFIDDMFETMDAYEGIGLAAPQVSRSEQLIVMRCDGQDAIPE-TV 60

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
            INP+I+ +    +   EGCLS+   R  V R + I V+ +D   +     A GL   C+
Sbjct: 61  LINPRIVFYGPAQAEMWEGCLSVDGLRGKVTRPSSIRVQALDREGRSVDFEASGLFGVCI 120

Query: 135 QHELDHLNGILFIDHLSRL 153
           QHE+DHL G LF+D ++ L
Sbjct: 121 QHEMDHLIGKLFLDRMTDL 139


>gi|304410515|ref|ZP_07392133.1| peptide deformylase [Shewanella baltica OS183]
 gi|307304608|ref|ZP_07584358.1| peptide deformylase [Shewanella baltica BA175]
 gi|304350999|gb|EFM15399.1| peptide deformylase [Shewanella baltica OS183]
 gi|306912010|gb|EFN42434.1| peptide deformylase [Shewanella baltica BA175]
          Length = 185

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    +     P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY +   
Sbjct: 75  PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           + Q     G +A   QHE DHL GI  ++ 
Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLER 164


>gi|323448077|gb|EGB03980.1| hypothetical protein AURANDRAFT_33186 [Aureococcus anophagefferens]
          Length = 225

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 2/144 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           +V +P P LR  +  +   +      +   M ++MY+  G+GLAA Q+GV  RL+V +  
Sbjct: 54  IVAYPHPALRARNGDLAPGDLAAAAPLAARMFDLMYAAGGVGLAAPQVGVNARLMVFNPS 113

Query: 65  -DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D A   + +   NP+I+  S +  V  EGCLS P     V R A++ V  +D   +   
Sbjct: 114 GDAARTGDEVALANPRIVAASAELEVGDEGCLSFPGMGGPVARHAWVEVAGLDLEGRAIS 173

Query: 124 IYADGLLATCLQHELDHLNGILFI 147
               G  A   QHE DHL+G++++
Sbjct: 174 RAYAGWDARVFQHEYDHLDGVVYV 197


>gi|52841298|ref|YP_095097.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148360273|ref|YP_001251480.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|296106683|ref|YP_003618383.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|52628409|gb|AAU27150.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148282046|gb|ABQ56134.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|295648584|gb|ADG24431.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
          Length = 172

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 10/151 (6%)

Query: 11  DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           +PILR+ + PI +    +S +  LI  M  +M     +G+AA QIG+  R++V    D+ 
Sbjct: 9   NPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFG-TDYT 67

Query: 68  HRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            R+ P         INP +   S +     EGCL+  +   +V R+  I     D +   
Sbjct: 68  KRRKPEYPIPDTALINPSLKILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNR 127

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               A GL A  LQHE+DHL+G LF+D +  
Sbjct: 128 ITKKASGLEARILQHEIDHLDGFLFLDRVED 158


>gi|325955362|ref|YP_004239022.1| peptide deformylase [Weeksella virosa DSM 16922]
 gi|323437980|gb|ADX68444.1| Peptide deformylase [Weeksella virosa DSM 16922]
          Length = 223

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 5/151 (3%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           ILR  S  ++  +S +  L D ML  +   +  G+G+AA QIG+      + +Q    + 
Sbjct: 61  ILRTKSIDLDPTDSSVKKLADRMLATVLDEETRGVGIAAPQIGINRN--AVWIQRFDQKD 118

Query: 71  NPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
            P   FINPKI  +S      +EGCLSIPD   +V RS  I + + D + Q      +G 
Sbjct: 119 QPFQFFINPKITWYSSLLQKGREGCLSIPDTIGNVVRSYAIRIEFYDLDGQFHDEVIEGF 178

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A   QHE+DHLNG+LF D L   ++   TK
Sbjct: 179 TAVIAQHEVDHLNGVLFTDRLQEQEKTTYTK 209


>gi|169837129|ref|ZP_02870317.1| peptide deformylase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 191

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIG 53
           M K+ ++  P+  LR+ S+ I  I  ++  LI +M        E         LAAVQ+ 
Sbjct: 1   MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 60

Query: 54  VLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            L R+V++  + D+    +    INP+II +  + +   EGCLS+      V R   + V
Sbjct: 61  KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           + ++ + +   I A+G LA  LQHE+DH NGI+FIDH+ + K+D   K
Sbjct: 121 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 167


>gi|317482560|ref|ZP_07941575.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915982|gb|EFV37389.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 217

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAAPQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P         V INP     SD  + + EGCLS   Y+A  KR   IT  +
Sbjct: 90  DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            D + +H      G  A   QHE DHL+G L+ID   
Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAE 186


>gi|302830440|ref|XP_002946786.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f.
           nagariensis]
 gi|300267830|gb|EFJ52012.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f.
           nagariensis]
          Length = 257

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 24/169 (14%)

Query: 6   LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V    P+LR+V+R +      +  + NL+  M  VM +  G+GLAA QIG  +R++V++
Sbjct: 51  IVQAGTPVLRQVAREVPPELLGSEWLRNLVATMTSVMRAAPGVGLAAPQIGEPWRVIVLE 110

Query: 63  LQDHAHRK--------------------NPMVFINPK-IITFSDDFSVYQEGCLSIPDYR 101
            ++    +                     P+V +NP+ +     + + + EGCLS+  Y 
Sbjct: 111 DREEYIVRQAASGMYDDDTLAAMERRAFGPLVLVNPRGLRPVGHEGAAFFEGCLSVRGYV 170

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           A V R   + +  +D      ++ A G +A  LQHE DHL GIL++D +
Sbjct: 171 AVVPRYRIVELEAVDPAGLPVVVRASGWMARILQHEFDHLQGILYVDRM 219


>gi|47221907|emb|CAF98919.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 198

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  + P++      +++  ++  +++VM   D +GL+A QIGV  R++ ++  
Sbjct: 24  QVGDPVLRSRAAPVDPGAVGGAEVQKVVHTLVKVMRELDCVGLSAPQIGVPLRILALEYP 83

Query: 65  DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +    +                 +F+NP++       +++QE C SI  + A V R   +
Sbjct: 84  EKMLEESSPASREARGLSAQPLRIFVNPQLRVLDGRTALFQEACESISGFSATVPRYLSV 143

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V  ++ N +     A G  A  LQHE+DHL+G+L+ID + 
Sbjct: 144 EVSGLNENGEEVRWQARGWPARILQHEMDHLDGVLYIDRMD 184


>gi|271967210|ref|YP_003341406.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270510385|gb|ACZ88663.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 159

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 7/161 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLV 59
           M  +P+  F DP+LR V+ P+   + ++  L+ ++   M +  G    A  Q+GV  R++
Sbjct: 1   MAVQPIRPFADPVLRTVAEPVTSFDRELRGLVKSLQATMRAGAGRAGLAAPQLGVSLRVL 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V +L   A        INP++   S+   V  E CLS P     ++RS  +T R  D   
Sbjct: 61  VYELDGRAG-----HLINPRLEP-SERKIVADEACLSAPGLWWPLERSYMVTARGRDMFG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           +   + A G+LA  LQHE DHL+G+LFID L   +R+   +
Sbjct: 115 KPVTVRALGMLARVLQHEADHLDGVLFIDRLPEDERERFLQ 155


>gi|325963300|ref|YP_004241206.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469387|gb|ADX73072.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 226

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           P+V    P LR+ +   +   S +    LI  M EVM+   G+GLAA Q+G+  ++ V+ 
Sbjct: 30  PIVQAGHPALRQRAAAYDGQLSAVQLDGLISLMREVMHEAPGVGLAAPQLGIPLQIAVVE 89

Query: 62  ---DLQDHA---HRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              D+   A    +++P+ F   +NP+      D + + EGCLS+   +A V R   + +
Sbjct: 90  DQYDVDPEAAALRKRSPLEFLAIVNPRYTPLGTDMASFYEGCLSLNGLQAVVARPEKVLL 149

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            +   +        +G  A  +QHE DHLNG+L++D 
Sbjct: 150 EFQAPDGSGVQREFEGWQARIVQHETDHLNGVLYVDR 186


>gi|126173131|ref|YP_001049280.1| peptide deformylase [Shewanella baltica OS155]
 gi|125996336|gb|ABN60411.1| peptide deformylase [Shewanella baltica OS155]
          Length = 185

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL + +  +   ++++ +L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILGQTAITVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    +     P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY +   
Sbjct: 75  PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           + Q     G +A   QHE DHL GI  ++ 
Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLER 164


>gi|118465399|ref|YP_883852.1| peptide deformylase [Mycobacterium avium 104]
 gi|118166686|gb|ABK67583.1| polypeptide deformylase [Mycobacterium avium 104]
          Length = 177

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 26  SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH--RKNPMVFINP----- 78
           +D++ LI +M + M +  G+GLAA QIGV  R+ V D  D      +   V +NP     
Sbjct: 11  ADLVKLIADMYDTMDAAHGVGLAANQIGVGLRVFVYDCADDRGLTERRRGVVVNPVLETS 70

Query: 79  KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHEL 138
           +I     D     EGCLS+P       R+++  V  +D +     I   GL A  LQHE 
Sbjct: 71  EIPETMPDPDTDDEGCLSVPGESFPTGRASWARVTGLDADGSPVSIEGHGLFARMLQHET 130

Query: 139 DHLNGILFIDHL 150
            HL+G L++D L
Sbjct: 131 GHLDGFLYLDRL 142


>gi|323456767|gb|EGB12633.1| hypothetical protein AURANDRAFT_14540 [Aureococcus anophagefferens]
          Length = 181

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 3/164 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +  +P P+LR     I   + D       M+ +MY  DG+GLAA Q+G+  R  V +   
Sbjct: 15  ITEYPMPVLRGPCADIVDFDDDFKQTCKEMMSIMYQADGVGLAATQVGLWKRFFVYNPTG 74

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLS--IPDYRADVKRSAFITVRYMDCNAQHQ 122
           D   +    + +NP+I  + +  +  +EGCLS    +    ++RS  I V Y+D   + +
Sbjct: 75  DRLMKPYERIVVNPRITKYGEATADEEEGCLSSRSENCAGVIRRSLDIWVEYVDERNKKR 134

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                G  A   QHE DH+ G+L ID LS   R  +  ++ ++V
Sbjct: 135 TKKLSGFEARVFQHEYDHIEGVLHIDRLSPEDRAKVEPELERMV 178


>gi|54297041|ref|YP_123410.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris]
 gi|53750826|emb|CAH12234.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris]
          Length = 172

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%)

Query: 11  DPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
           DPILR+ + PI   +  S  +  LI  M  +M     +G+AA QIG+  R++V   +   
Sbjct: 9   DPILRQTAEPIAESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFSTEYTK 68

Query: 68  HRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            RK          INP +   S +     EGCL+  +   +V R+  I     D +    
Sbjct: 69  RRKPEYPIPDTALINPSLKILSKEIQNGYEGCLNCGEIMGEVPRAMEIEYSGFDIDGNKI 128

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152
              A GL A  LQHE+DHL+G LF+D +  
Sbjct: 129 TKTASGLEARILQHEIDHLDGFLFLDRVED 158


>gi|195444657|ref|XP_002069968.1| GK11287 [Drosophila willistoni]
 gi|194166053|gb|EDW80954.1| GK11287 [Drosophila willistoni]
          Length = 241

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR+ +  +      + +I  +++ M++V+   + +G+AA QIGV  R++ ++ +
Sbjct: 56  QVGDPVLRQQAALVPPEHLDSPEIKAIVEQMIKVLRKYNCVGIAAPQIGVSLRIIAMEFK 115

Query: 65  DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
               ++ P               V INP++   S     + EGC+S+  Y  +V+R   +
Sbjct: 116 KEIRKELPEFTYQARLMSELPLTVLINPELTVTSYVKLKHPEGCMSVRGYSGEVERYEAV 175

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +   D       I   G  A   QHE+DHL+G L+ D + R
Sbjct: 176 NLNGHDRLGVKTQISLTGWNARIAQHEMDHLDGKLYTDRMDR 217


>gi|217974557|ref|YP_002359308.1| peptide deformylase [Shewanella baltica OS223]
 gi|217499692|gb|ACK47885.1| peptide deformylase [Shewanella baltica OS223]
          Length = 185

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL R +  +   ++++ +L + M   M +  G+G+AA Q+     L ++  +
Sbjct: 15  PIALVGEAILGRTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    +     P+V +NP+II  S D    +EGCLS+P  R ++ R   I VRY +   
Sbjct: 75  PNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNLQG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           + Q     G +A   QHE DHL GI  ++ 
Sbjct: 135 EWQQAELTGFIARIFQHEFDHLQGITLLER 164


>gi|297583895|ref|YP_003699675.1| peptide deformylase [Bacillus selenitireducens MLS10]
 gi|297142352|gb|ADH99109.1| peptide deformylase [Bacillus selenitireducens MLS10]
          Length = 194

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR+ +  +   ++ +    +++M++ + ++             G+GLAA Q
Sbjct: 6   DIVREGHPALRKPAEEVPVPLSEEDRQTLEDMMQFLRNSQDPETAETYGLRPGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPD-YRADVKRSA 108
           I V   + V+   +       M F+NPKII+ S + +     EGCLS+       V R +
Sbjct: 66  INVSKNMFVVRFAEEDEEPIEMTFVNPKIISHSAETTHLPDGEGCLSVDRSVEGTVPRYS 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + V   D N     I   G  A   QHE DHLNGI+F D + 
Sbjct: 126 RVKVEATDENGHSFTIRLRGFFAIVFQHEFDHLNGIMFYDRID 168


>gi|284991544|ref|YP_003410098.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
 gi|284064789|gb|ADB75727.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
          Length = 177

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 5/151 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +  DP+LR  + P+   + ++  L+ ++ + M++  G GLAA QIGV  R+  
Sbjct: 1   MSVTPIRLLGDPVLRTPAAPVVDFDQELRRLVADLTDTMFAAGGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            +NP++    ++     EGCLSIP Y  D +R  ++     D + +
Sbjct: 61  WYVDGEVG-----HLVNPEVTPVGEETEEGPEGCLSIPGYTFDCRRHLYVAATGFDLHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +    LLA  +QHE+DHL+G+LF+D L 
Sbjct: 116 PVRVEGSHLLARAVQHEVDHLDGVLFVDRLD 146


>gi|30249715|ref|NP_841785.1| peptide deformylase [Nitrosomonas europaea ATCC 19718]
 gi|39931084|sp|Q82TW4|DEF1_NITEU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|30180752|emb|CAD85666.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
          Length = 176

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + KP++   DP L + +R +++    ++  L+ +M + M + +G GLAA QIGV  ++V+
Sbjct: 1   MIKPVLKMGDPCLLQPARRVDQFGTPELEALLQDMQDTMAALNGAGLAAPQIGVSLQVVI 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             ++       A      V INP +   ++      EGCLSIP  R  V R   +  + +
Sbjct: 61  FGVEHSPRYPDAESVPFTVLINPVLTPLTEQMEEDWEGCLSIPGMRGLVPRYTRLRYQGV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D           G  A  +QHE DHLNGIL+   ++ L++
Sbjct: 121 DAAGASIDRTVTGFHARVVQHECDHLNGILYPMRINDLRK 160


>gi|138894591|ref|YP_001125044.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2]
 gi|196247801|ref|ZP_03146503.1| peptide deformylase [Geobacillus sp. G11MC16]
 gi|134266104|gb|ABO66299.1| N-formyl-methionyl-aminoacyl-tRNA deformylase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212585|gb|EDY07342.1| peptide deformylase [Geobacillus sp. G11MC16]
          Length = 184

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++    P LR+V+ P+    + +   ++ ++L+ +  +             GIGLA
Sbjct: 3   TMKDIIKEGHPTLRKVAEPVPLPASEEDKRILQSLLDYLKMSQDPEMAAKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QI V  R++ + + D           NPKI++ S    +    EGCLS+  D    V 
Sbjct: 63  APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R A ITV     + +   +   GL A   QHE+DHLNGI+F DH++ 
Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHINP 169


>gi|254498920|ref|ZP_05111625.1| peptide deformylase [Legionella drancourtii LLAP12]
 gi|254351905|gb|EET10735.1| peptide deformylase [Legionella drancourtii LLAP12]
          Length = 178

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 8/168 (4%)

Query: 5   PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V+  +P LR VS+PI+       D+  L + +  +M   +G+GLAA QIG+  R +V 
Sbjct: 7   DVVLLGNPTLRMVSKPIDDEEFGTLDLNQLSERLFHMMKIKNGLGLAAPQIGINKRAIVF 66

Query: 62  DLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            + +H  +K+       +  NP   + SD      EGCLS+ D R  V R   I  R  D
Sbjct: 67  GMDNHPVKKHLPPIPYTILFNPIFESTSDFIEEEYEGCLSVGDLRGKVPRHKNIIYRGYD 126

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +       A  L A  +QHE DHLNGI+F+D ++  +      ++ K
Sbjct: 127 VDGNLIEREASDLHARVVQHETDHLNGIIFLDKVTNHQSLGFHNELIK 174


>gi|297204169|ref|ZP_06921566.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
 gi|197714146|gb|EDY58180.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
          Length = 218

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 18/162 (11%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIM-----NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           P+V   DP+LR+    IE  +  +        ++ +   M++  G+GLAA Q+GV  R+ 
Sbjct: 25  PIVAAGDPVLRQG---IEHYDGHLDGALLSRFVEALRVTMHAAPGVGLAAPQVGVPLRIA 81

Query: 60  VIDLQDHAHRKNPM----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           VI+       +  +          V +NP         + + EGCLS+P ++A V R A 
Sbjct: 82  VIEDPAPVPEEIRLARGRVPQPFRVLVNPSYAPVGTPRAAFFEGCLSVPGWQAVVARPAE 141

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + +   D N +       G  A  +QHE DHL+G+L++D   
Sbjct: 142 VRLTCEDENGRAVDEVFSGWPARIVQHETDHLDGVLYLDRAE 183


>gi|255003823|ref|NP_080789.2| peptide deformylase-like protein [Mus musculus]
          Length = 231

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E       ++  L+  M++VM     +GL+A Q+GV  +++ ++  
Sbjct: 57  QVGDPVLRVVAAPVEPEQLAGPELQRLVGRMVQVMRRRGCVGLSAPQLGVPLQVLALEFP 116

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D                      V +NP +         + EGC S+  + A V R   +
Sbjct: 117 DKLLRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 176

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  +D   +  +  A G  A  +QHE+DHL G LFID + 
Sbjct: 177 QISGLDPKGEPVVWSASGWTARIIQHEMDHLQGCLFIDKMD 217


>gi|296453662|ref|YP_003660805.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183093|gb|ADG99974.1| Peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
          Length = 217

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 3   KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  ILPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INP     SD  + + EGCLS   Y+A  KR   IT 
Sbjct: 88  VEDHVRDDEDDPREIAEFPFHVIINPSYRPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + D + +H      G  A   QHE DHL+G L+ID   
Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAE 186


>gi|241562206|ref|XP_002401329.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|215499858|gb|EEC09352.1| polypeptide deformylase, putative [Ixodes scapularis]
          Length = 217

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  + P++     + +I  +I  M +VM  T  +G++A QIG   ++ +++  
Sbjct: 35  QVGDPVLRVRAEPVDPQKITSPEIRKVIHTMRQVMRGTYSVGISAPQIGCPLQITMMEFS 94

Query: 65  DHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   R                  VFINP +   ++   V+ EGC SI  Y A+V R   +
Sbjct: 95  NSNIRMAKKEDMTARLYQAFPLKVFINPTMEVVNNQQLVFPEGCESIRGYSAEVPRYYEV 154

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  ++ + +H    A G  A  +QHE+DHL G L+ID ++
Sbjct: 155 KISGLNEHGEHHEWQARGWPARIIQHEIDHLEGCLYIDRMN 195


>gi|114330947|ref|YP_747169.1| peptide deformylase [Nitrosomonas eutropha C91]
 gi|114307961|gb|ABI59204.1| peptide deformylase [Nitrosomonas eutropha C91]
          Length = 176

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + KP++   DP L + ++ IE+ ++  +  L+ +M + M + +G GLAA QIG+  ++V+
Sbjct: 1   MIKPVLKMGDPRLLQPAQRIEQFDTPVLKELLQDMQDTMAALNGAGLAAPQIGISLQVVI 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             ++      +       V INP +   +++     EGCLSIP  R  V R   +  + +
Sbjct: 61  FGIEHSPRYPDVESVPFTVLINPILTPLTEEQEEDWEGCLSIPGMRGLVPRYTHLRYQGV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           D  A        G  A  +QHE DHLNGIL+   ++ L++
Sbjct: 121 DETATPIDRTVAGFHARVVQHECDHLNGILYPMRINDLRK 160


>gi|213692889|ref|YP_002323475.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524350|gb|ACJ53097.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320459064|dbj|BAJ69685.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 217

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 3   KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  ILPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INP     SD  + + EGCLS   Y+A  KR   IT 
Sbjct: 88  VEDHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + D + +H      G  A   QHE DHL+G L+ID   
Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAE 186


>gi|295399645|ref|ZP_06809626.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978048|gb|EFG53645.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 184

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++    P LR+V+ P+    + +   ++ ++L+ +  +             GIGLA
Sbjct: 3   TMKDIIKEGHPTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QI V  R++ + + D           NPKI++ S    +    EGCLS+  +    V 
Sbjct: 63  APQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R A ITV     + +   +   GL A   QHE+DHLNGI+F DH+  
Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 169


>gi|187734744|ref|YP_001876856.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
 gi|187424796|gb|ACD04075.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
          Length = 226

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 17/177 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           V   ++ +  P+LR    P+  IN DI++ +D+M E + +  GIGLAA Q+G   +LV I
Sbjct: 13  VILDILQYGHPLLREECGPVVHINRDILSFLDDMQETL-AQGGIGLAAPQVGRPIQLVTI 71

Query: 62  DLQDHA---------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           ++                    R  P+ FINP +  F      Y+EGCLSI    A+V R
Sbjct: 72  NIPSTDATTTWLEVDGCPTTLSRIMPLNFINPILHPF-GKKVPYREGCLSITKVYANVMR 130

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            + +       + +   +  +GLLA CLQHE+DHL+G LF D +S    D + +++ 
Sbjct: 131 RSCVRAVLTMMDGRTVTVKCNGLLARCLQHEVDHLHGGLFTDLVSSGDHDKVIRRLR 187


>gi|195330061|ref|XP_002031727.1| GM26160 [Drosophila sechellia]
 gi|194120670|gb|EDW42713.1| GM26160 [Drosophila sechellia]
          Length = 238

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  + K    + +I  +++ M++V+   D +G+AA QIGV  R++ ++ +  
Sbjct: 55  GDPVLRQQAALVPKEHMDSPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGR 114

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             ++ P               VFINP +   +     + EGC+S+  Y A+V+R   + +
Sbjct: 115 IRKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGVKL 174

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 175 TGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|116670740|ref|YP_831673.1| peptide deformylase [Arthrobacter sp. FB24]
 gi|116610849|gb|ABK03573.1| Peptide deformylase [Arthrobacter sp. FB24]
          Length = 226

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 12/158 (7%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-D 62
           +V    P+LR+ + P E     +++  LI  M EVM+   G+GLAA Q+G+  +L V+ D
Sbjct: 31  IVQAGHPVLRQQAAPYEGQLDGTELAALIALMREVMHDAPGVGLAAPQLGIPLQLAVLED 90

Query: 63  LQDHA------HRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
             D          ++P+ F   INP         + + EGCLS+   +A V R   + + 
Sbjct: 91  QYDVDAETAAVRHRSPLEFFAVINPSYSPLGTGTAAFYEGCLSLQGLQAVVSRHETVRLD 150

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + D     +     G  A  +QHE DHL GIL++D   
Sbjct: 151 FTDPGGTRRQQDFFGWQARIVQHEADHLQGILYVDKAE 188


>gi|312111833|ref|YP_003990149.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
 gi|311216934|gb|ADP75538.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
          Length = 185

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 18/170 (10%)

Query: 1   MVK--KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45
           M+   K ++    P LR+V+ P+    + +   ++ ++L+ +  +             GI
Sbjct: 1   MMITMKNIIKEGHPTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGI 60

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRA 102
           GLAA QI V  R++ + + D           NPKI++ S    +    EGCLS+  +   
Sbjct: 61  GLAAPQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPG 120

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V R A ITV     + +   +   GL A   QHE+DHLNGI+F DH+  
Sbjct: 121 YVPRYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 170


>gi|328949669|ref|YP_004367004.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
 gi|328449993|gb|AEB10894.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
          Length = 178

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 16/177 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYS-----TDGIGLAAVQIGV 54
           M  + ++   +P+LR VS P+E     ++  +++++ + +       T G G+AA QIGV
Sbjct: 1   MAVREVLQLGNPLLREVSEPVEDPTSPEVARIVEDLRDTLAHWRATTTYGRGIAAPQIGV 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           L R+V ++L +      P   INP I   S +  V  + CLS       V+R   +TVRY
Sbjct: 61  LKRIVFLNLPELG----PWPLINPTITAKSPETMVVWDACLSFLSIFMQVERHREVTVRY 116

Query: 115 MDCNAQHQIIY--ADGLLATCLQHELDHLNGILFIDHLSRLK----RDMITKKMSKL 165
            D       +       L+  LQHE+DHL+GIL ID +  +K    R    ++    
Sbjct: 117 QDLRGTWHEVRAGEAHNLSELLQHEIDHLDGILAIDRVVDVKTIVTRQEFERRYRAH 173


>gi|239826455|ref|YP_002949079.1| peptide deformylase [Geobacillus sp. WCH70]
 gi|239806748|gb|ACS23813.1| peptide deformylase [Geobacillus sp. WCH70]
          Length = 184

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++    P LR+V+ P+    + +   ++ ++L+ +  +             GIGLA
Sbjct: 3   TMKDIIKEGHPTLRKVAEPVSLPPSEEDKQVLQSLLDYVKMSQNPELAEKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QI V  R++ + + D           NPKI++ S    +    EGCLS+  +    V 
Sbjct: 63  APQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R A ITV       +   +   GL A   QHE+DHLNGI+F DH+  
Sbjct: 123 RYARITVTGTTLEGKEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 169


>gi|238061428|ref|ZP_04606137.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149]
 gi|237883239|gb|EEP72067.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149]
          Length = 186

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 6/153 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61
            +P+V  PDP+L R    ++  + ++  L  +++  M  + G +GLAA Q+GV  ++  +
Sbjct: 22  VRPVVSAPDPVLSRPGPEVDPTSDEVARLAADLIATMRVSPGCVGLAAPQVGVSAQVFAV 81

Query: 62  DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DC 117
           D+  H          V  N +++  S  +   +EGC+S+PD   DVKR++ + V  +   
Sbjct: 82  DVTGHPKAVTVHGTFVLCNARVVEGS-RWKSGREGCMSVPDLTGDVKRASRLVVEGLLPG 140

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           +     +  DG  A  LQHE+DH  G+LF+D +
Sbjct: 141 SGAPVRLVTDGFEARALQHEIDHCLGLLFLDRV 173


>gi|11641243|ref|NP_071736.1| peptide deformylase, mitochondrial precursor [Homo sapiens]
 gi|17433054|sp|Q9HBH1|DEFM_HUMAN RecName: Full=Peptide deformylase, mitochondrial; AltName:
           Full=Polypeptide deformylase; Flags: Precursor
 gi|11320944|gb|AAG33968.1|AF239156_1 peptide deformylase-like protein [Homo sapiens]
 gi|13195254|gb|AAK15624.1|AF322879_1 polypeptide deformylase-like protein [Homo sapiens]
 gi|38230771|gb|AAR14341.1| peptide deformylase [synthetic construct]
 gi|119603671|gb|EAW83265.1| hCG2027080, isoform CRA_a [Homo sapiens]
 gi|119603674|gb|EAW83268.1| hCG2027080, isoform CRA_a [Homo sapiens]
          Length = 243

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L 
Sbjct: 69  QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 128

Query: 65  DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   R+ P               VF+NP +         + EGC S+  + A V R   +
Sbjct: 129 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  +D N +  +  A G  A  +QHE+DHL G LFID + 
Sbjct: 189 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 229


>gi|221104975|ref|XP_002163732.1| PREDICTED: similar to peptide deformylase-like protein [Hydra
           magnipapillata]
          Length = 212

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 21/166 (12%)

Query: 6   LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +    DP+LR+V++P+     +  D   L D ++  +   +G G+AA QIGV  +++ ++
Sbjct: 32  VRQIGDPVLRQVAKPVDLATIVTPDFKKLCDRLVSTLRRHNGCGIAAPQIGVPLQVIAVE 91

Query: 63  LQDHAHRK------------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
              +  +                      V INPKI          +EGCLS+  YRA V
Sbjct: 92  FTGYDLKVAMDKYGSKGVSKLQMSLFPLKVMINPKIKIIDPTMLALKEGCLSVKGYRAMV 151

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            R+  I V  ++ +   +   + G  +  +QHE+DHL G LF+D +
Sbjct: 152 PRAKEIEVEMLNVSGNTETFRSLGWTSRIIQHEVDHLQGNLFVDTM 197


>gi|23335362|ref|ZP_00120599.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum
           DJO10A]
 gi|23465752|ref|NP_696355.1| peptide deformylase [Bifidobacterium longum NCC2705]
 gi|189439807|ref|YP_001954888.1| peptide deformylase [Bifidobacterium longum DJO10A]
 gi|227546365|ref|ZP_03976414.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239622367|ref|ZP_04665398.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133213|ref|YP_004000552.1| def2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688630|ref|YP_004208364.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
 gi|39931158|sp|Q8G534|DEF1_BIFLO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|23326438|gb|AAN24991.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189428242|gb|ACD98390.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|227213346|gb|EEI81218.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239514364|gb|EEQ54231.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517274|emb|CBK70890.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           longum F8]
 gi|311772414|gb|ADQ01902.1| Def2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320459966|dbj|BAJ70586.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
          Length = 217

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P         V INP     SD  + + EGCLS   Y+A  KR   IT  +
Sbjct: 90  DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            D + +H      G  A   QHE DHL+G L+ID   
Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAE 186


>gi|194902253|ref|XP_001980656.1| GG17275 [Drosophila erecta]
 gi|190652359|gb|EDV49614.1| GG17275 [Drosophila erecta]
          Length = 196

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 17/159 (10%)

Query: 10  PDPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  +  E I+S +I  +ID M++V+   D +G+AA Q+G+  R++V++ ++ 
Sbjct: 13  GDPVLRQRAEEVPPEDIDSMEINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 72

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              +                 VFINP++   S   + + EGC+S+  Y A V+R   + +
Sbjct: 73  KQEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKVRI 132

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R +        +  +G  A   QHE+DHLNGI+++D + 
Sbjct: 133 RGIGKLGTPSEMELEGWSARIAQHEVDHLNGIIYVDKMD 171


>gi|109899738|ref|YP_662993.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
 gi|109702019|gb|ABG41939.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
          Length = 188

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 10/159 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD---IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M+K  +    + ILR  ++ + + + +       +D +L  M   +G+G+AA Q+     
Sbjct: 1   MMK--IAQVGEVILRTPAKSVSQTDIETGAFQEFVDALLATMQEANGVGIAAPQVFDERA 58

Query: 58  LVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +++I  +      N     P+V INPK+I  S++     EGCLS+P  R  ++R+ ++ +
Sbjct: 59  VMIIASRPSPRYPNAPDMEPLVLINPKVIQSSEETVKDWEGCLSVPGLRGFIRRATWVEI 118

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            Y+  +        DG +A    HE DHL G  ++DH+ 
Sbjct: 119 EYLQRDGTPATQRLDGFVARIFLHEFDHLIGKTWLDHVE 157


>gi|253731832|ref|ZP_04865997.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724431|gb|EES93160.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|329728826|gb|EGG65247.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193]
          Length = 162

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ ++K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVKKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              + A   +A  + H +D +NGI F +   R+  D 
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153


>gi|169837246|ref|ZP_02870434.1| peptide deformylase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 238

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIGVLYRL 58
           +   P+  LR+ S+ I  I  ++  LI +M        E         LAAVQ+  L R+
Sbjct: 53  IGPHPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVDKLERI 112

Query: 59  VVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           V++  + D+    +    INP+II +  + +   EGCLS+      V R   + V+ ++ 
Sbjct: 113 VIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRVKALNE 172

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           + +   I A+G LA  LQHE+DH NGI+FIDH+ + K+D   K
Sbjct: 173 DGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 214


>gi|194741018|ref|XP_001952986.1| GF17443 [Drosophila ananassae]
 gi|190626045|gb|EDV41569.1| GF17443 [Drosophila ananassae]
          Length = 196

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 17/159 (10%)

Query: 10  PDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  +  E+I+  +I  ++D M++V+   D +G+AA QIG+  R++V++ ++ 
Sbjct: 13  GDPVLRQRAEEVPEERIDSPEIDQIVDRMVKVLRHYDCVGVAAPQIGIPLRIIVMEFREG 72

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              +                 VF+NP++   S   + + EGC+S+  Y A+V R   + V
Sbjct: 73  KREQYKPEIYEERKMSTLPLAVFVNPELEIVSGQINKHPEGCMSVRGYSAEVGRFDKVRV 132

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R +        +  +G  A   QHE DHLNG +++D + 
Sbjct: 133 RGVGKLGTPSEMELEGWNARIAQHETDHLNGCIYVDRMD 171


>gi|322690616|ref|YP_004220186.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455472|dbj|BAJ66094.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 217

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 5   PLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAVVE 89

Query: 63  LQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                   +P         V INP     SD  + + EGCLS   Y+A  KR   IT  +
Sbjct: 90  DHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITAEW 149

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            D + +H      G  A   QHE DHL+G L+ID   
Sbjct: 150 DDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAE 186


>gi|66771605|gb|AAY55114.1| IP07194p [Drosophila melanogaster]
          Length = 206

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 17/159 (10%)

Query: 10  PDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  +   +    +I  +ID M++V+   D +G+AA Q+G+  R++V++ ++ 
Sbjct: 23  GDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 82

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              +                 VFINP++   S   + + EGC+S+  Y A+V+R   + +
Sbjct: 83  KQEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKVRI 142

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 143 RGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMD 181


>gi|261885374|ref|ZP_06009413.1| peptide deformylase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 153

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 4/139 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PD  L   S  + K ++++   +D+M + M + +GIGLAA+Q+G   R+ +I
Sbjct: 1   MILDVITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFII 60

Query: 62  DL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +L    +   + + +  INPK I+   +  VYQEGCLS+P Y  DVKR+  I +++ D  
Sbjct: 61  NLINEDEVQDKNDLLEIINPKFISKDGEI-VYQEGCLSVPGYYEDVKRAKDIKIQFQDRF 119

Query: 119 AQHQIIYADGLLATCLQHE 137
              + + ADGLL+  +QHE
Sbjct: 120 GNLKELEADGLLSVAIQHE 138


>gi|195571951|ref|XP_002103964.1| GD20712 [Drosophila simulans]
 gi|194199891|gb|EDX13467.1| GD20712 [Drosophila simulans]
          Length = 196

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  +   +    +I  +ID M++V+   D +G+AA Q+G+  R++V++ ++ 
Sbjct: 13  GDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 72

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              +                 VFINP++   S   + + EGC+S+  Y A V+R   + +
Sbjct: 73  KQEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKVRI 132

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R +        +  +G  A   QHE+DHLNG +++D +  
Sbjct: 133 RGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMDP 172


>gi|332227624|ref|XP_003262991.1| PREDICTED: peptide deformylase, mitochondrial-like [Nomascus
           leucogenys]
          Length = 240

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++V++L 
Sbjct: 69  QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLVLELT 128

Query: 65  DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   R+ P               VF+NP +         + EGC S+  + A V R   +
Sbjct: 129 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRLQAV 188

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  +D N +  +  A G  A  +QHE+DHL G LFID + 
Sbjct: 189 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 229


>gi|24645726|ref|NP_731494.1| CG31278 [Drosophila melanogaster]
 gi|23170931|gb|AAF54540.2| CG31278 [Drosophila melanogaster]
 gi|54650588|gb|AAV36873.1| RE57173p [Drosophila melanogaster]
 gi|220952214|gb|ACL88650.1| CG31278-PA [synthetic construct]
          Length = 238

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  + K    + +I  +++ M++V+   D +G+AA QIGV  R++ ++ +  
Sbjct: 55  GDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGR 114

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             ++ P               +FINP +   +     + EGC+S+  Y A+V+R   + +
Sbjct: 115 IRKELPEAVYQARQMSELPLTIFINPVLTVTNYAKLKHPEGCMSVRGYSAEVERFEGVKL 174

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 175 TGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|195571953|ref|XP_002103965.1| GD20713 [Drosophila simulans]
 gi|194199892|gb|EDX13468.1| GD20713 [Drosophila simulans]
          Length = 239

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  + K    + +I  +++ M++V+   D +G+AA QIGV  R++ ++ +  
Sbjct: 55  GDPVLRQQAALVPKEHMDSPEIGAIVEQMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGR 114

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             ++ P               VFINP +   +     + EGC+S+  Y A+V+R   + +
Sbjct: 115 IRKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGVKL 174

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 175 TGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|76253777|ref|NP_001028902.1| hypothetical protein LOC619248 [Danio rerio]
 gi|66911060|gb|AAH97196.1| Zgc:114141 [Danio rerio]
 gi|148725884|emb|CAN87858.1| novel protein (zgc:114141) [Danio rerio]
          Length = 247

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  +  +E       ++  +I  +++VM   + +GL+A QIGV  R++ ++  
Sbjct: 73  QVGDPVLRSHAAEVEPGAIQGPEVQKVIKTLVKVMRKLECVGLSAPQIGVPLRILALEYP 132

Query: 65  DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
                +                M+FINP++        ++QE C SI  Y A V R   +
Sbjct: 133 KKMLEESSTASVEARGLVAVPLMIFINPQLRVLDGRTVIFQEACESISGYSASVPRYVSV 192

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V  ++  A+     A G  A  LQHE+DHLNG+L+IDH+ 
Sbjct: 193 EVSGLNEKAEEVSWKASGWPARILQHEMDHLNGVLYIDHMD 233


>gi|18043802|gb|AAH19912.1| Peptide deformylase (mitochondrial) [Homo sapiens]
          Length = 243

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L 
Sbjct: 69  QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 128

Query: 65  DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   R+ P               VF+NP +         + EGC S+  + A V R   +
Sbjct: 129 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  +D N +  +  A G  A  +QHE+DHL G LFID + 
Sbjct: 189 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 229


>gi|24645728|ref|NP_731495.1| CG31373 [Drosophila melanogaster]
 gi|23170932|gb|AAN13481.1| CG31373 [Drosophila melanogaster]
          Length = 196

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 17/159 (10%)

Query: 10  PDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  +   +    +I  +ID M++V+   D +G+AA Q+G+  R++V++ ++ 
Sbjct: 13  GDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 72

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              +                 VFINP++   S   + + EGC+S+  Y A+V+R   + +
Sbjct: 73  KQEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKVRI 132

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 133 RGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMD 171


>gi|195055502|ref|XP_001994656.1| GH17360 [Drosophila grimshawi]
 gi|193892419|gb|EDV91285.1| GH17360 [Drosophila grimshawi]
          Length = 203

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 17/159 (10%)

Query: 10  PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR  +  +      + +I ++++ M++V+   D +G+AA Q+GV  R++V++ ++ 
Sbjct: 20  GDPVLRLCAEEVSAERIASQEIKDIVEQMVKVLRHYDCVGVAAPQLGVPMRIIVMEFREG 79

Query: 67  AHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              +                 +FINP+I   SD    + EGC+S+  Y A V R   + V
Sbjct: 80  KREQFTPEVYEERKMSHLPLTIFINPQIEIISDKQHTHPEGCMSVRGYSAKVSRYDRVRV 139

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +        +   G  A   QHE+DHLNGI++ID + 
Sbjct: 140 TGIGILGTPSELELVGWSARIAQHEMDHLNGIVYIDRMD 178


>gi|220912690|ref|YP_002487999.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
 gi|219859568|gb|ACL39910.1| formylmethionine deformylase [Arthrobacter chlorophenolicus A6]
          Length = 226

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           P+V    P LR+ + P + +I  + +  LI+ M +VM+   G+GLAA Q+G+  +L V+ 
Sbjct: 30  PIVQAGHPALRQKAAPFDGQITPEQLARLIELMRQVMHEAPGVGLAAPQLGIPLQLAVLE 89

Query: 62  DLQDHAHR------KNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           D  D  H       + P+ F+   NP       D + + EGCLS+   +A V R   + +
Sbjct: 90  DKYDVDHEAAALRNRAPLDFLAILNPSYTPAGPDRAAFYEGCLSLNGLQAVVSRPQAVLL 149

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            ++  +   +     G  A  +QHE DHLNGIL++D 
Sbjct: 150 DFVRPDGGAERRGFSGWQARIVQHETDHLNGILYVDR 186


>gi|167044672|gb|ABZ09343.1| putative Polypeptide deformylase [uncultured marine microorganism
           HF4000_APKG7H23]
          Length = 179

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 11/156 (7%)

Query: 1   MVKKPLVIFPDPILRRV-----SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55
           M  +PL   PD +LR       +R ++  +  +  LID M+E M+  +G+G+A+ Q+G  
Sbjct: 1   MAIRPLRYLPDQLLRTKTVSLRARDVQ--SPAVQRLIDEMIESMHHYNGVGIASNQVGSR 58

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           YR+ +I   +      P V +NP+I     +  V  EGCLS+P Y+  + RS  + V  +
Sbjct: 59  YRICIIQRPEEDAV--PFVLVNPRITRREGEREVT-EGCLSLPGYQGGIVRSERVWVTAL 115

Query: 116 DCNAQHQIIYAD-GLLATCLQHELDHLNGILFIDHL 150
           D   +   +  + GLLA  L+HE DHL+G+ FIDHL
Sbjct: 116 DRQGKQVQLRGETGLLAQALEHETDHLDGVAFIDHL 151


>gi|15924205|ref|NP_371739.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926798|ref|NP_374331.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315]
 gi|57651784|ref|YP_186090.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|87161304|ref|YP_493805.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194921|ref|YP_499721.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267706|ref|YP_001246649.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393764|ref|YP_001316439.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221337|ref|YP_001332159.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156979536|ref|YP_001441795.1| hypothetical protein SAHV_1205 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509387|ref|YP_001575046.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142005|ref|ZP_03566498.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253315573|ref|ZP_04838786.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006002|ref|ZP_05144603.2| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795729|ref|ZP_05644708.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|258415953|ref|ZP_05682223.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|258419700|ref|ZP_05682667.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|258444552|ref|ZP_05692881.1| formylmethionine deformylase [Staphylococcus aureus A8115]
 gi|258447615|ref|ZP_05695759.1| polypeptide deformylase [Staphylococcus aureus A6300]
 gi|258449457|ref|ZP_05697560.1| polypeptide deformylase 1 [Staphylococcus aureus A6224]
 gi|258452512|ref|ZP_05700518.1| polypeptide deformylase 1 [Staphylococcus aureus A5948]
 gi|258454836|ref|ZP_05702800.1| polypeptide deformylase 1 [Staphylococcus aureus A5937]
 gi|262048116|ref|ZP_06021003.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30]
 gi|262051848|ref|ZP_06024064.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3]
 gi|269202830|ref|YP_003282099.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282892701|ref|ZP_06300936.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|282919997|ref|ZP_06327726.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|282927555|ref|ZP_06335171.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|284024139|ref|ZP_06378537.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132]
 gi|294848208|ref|ZP_06788955.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|295407153|ref|ZP_06816954.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|296275236|ref|ZP_06857743.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1]
 gi|297245961|ref|ZP_06929820.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|304381222|ref|ZP_07363875.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|54036958|sp|P63922|DEFL_STAAN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|54040934|sp|P63921|DEFL_STAAM RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81694664|sp|Q5HGL7|DEFL_STAAC RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|13701015|dbj|BAB42310.1| SA1058 [Staphylococcus aureus subsp. aureus N315]
 gi|14246985|dbj|BAB57377.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|57285970|gb|AAW38064.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|87127278|gb|ABD21792.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202479|gb|ABD30289.1| polypeptide deformylase, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|147740775|gb|ABQ49073.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946216|gb|ABR52152.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374137|dbj|BAF67397.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156721671|dbj|BAF78088.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368196|gb|ABX29167.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257789701|gb|EEV28041.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|257839289|gb|EEV63763.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|257844285|gb|EEV68667.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|257850045|gb|EEV73998.1| formylmethionine deformylase [Staphylococcus aureus A8115]
 gi|257853806|gb|EEV76765.1| polypeptide deformylase [Staphylococcus aureus A6300]
 gi|257857445|gb|EEV80343.1| polypeptide deformylase 1 [Staphylococcus aureus A6224]
 gi|257859730|gb|EEV82572.1| polypeptide deformylase 1 [Staphylococcus aureus A5948]
 gi|257863219|gb|EEV85983.1| polypeptide deformylase 1 [Staphylococcus aureus A5937]
 gi|259160249|gb|EEW45277.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3]
 gi|259163682|gb|EEW48237.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30]
 gi|262075120|gb|ACY11093.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|269940707|emb|CBI49088.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282590558|gb|EFB95635.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|282594713|gb|EFB99697.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|282764698|gb|EFC04823.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|285816897|gb|ADC37384.1| Peptide deformylase [Staphylococcus aureus 04-02981]
 gi|294825008|gb|EFG41430.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|294968006|gb|EFG44034.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|297177125|gb|EFH36379.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|302751038|gb|ADL65215.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340205|gb|EFM06146.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829609|emb|CBX34451.1| polypeptide deformylase family protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315131006|gb|EFT86990.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315198452|gb|EFU28781.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140970|gb|EFW32817.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144315|gb|EFW36081.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329313884|gb|AEB88297.1| Peptide deformylase-like protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329724773|gb|EGG61278.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189]
 gi|329727640|gb|EGG64096.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172]
          Length = 162

 Score =  146 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ ++  +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              + A   +A  + H +D +NGI F +   R+  D 
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153


>gi|291456210|ref|ZP_06595600.1| peptide deformylase [Bifidobacterium breve DSM 20213]
 gi|291381487|gb|EFE89005.1| peptide deformylase [Bifidobacterium breve DSM 20213]
          Length = 217

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 3   KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+  V+   +     +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  ILPIVQAGEPVLRQQTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INPK     +  + + EGCLS   Y+A  KR   IT 
Sbjct: 88  VEDHVRDDEDDPREIAEFPFHVIINPKYTPVGEKTTSFFEGCLSFDGYQAVRKRWLDITA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + D + +H      G  A   QHE DHL+G L+ID   
Sbjct: 148 EWDDEDGKHHSEQLHGWPARIFQHETDHLSGELYIDKAE 186


>gi|152976388|ref|YP_001375905.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025140|gb|ABS22910.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98]
          Length = 208

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +     E+    +  +I+         M+E      GIGLAA Q
Sbjct: 30  DVIREGNPILRTVAEEVQLPASEEDTQTLKEMIEFVINSQNPEMVEKYNLRPGIGLAAPQ 89

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSA 108
           IG+  R++ I + D           NPKII+ S + +     EGCLS+  +    V R A
Sbjct: 90  IGISKRMIAIHVTDTNETLYSYALFNPKIISHSVERTYLPAGEGCLSVDREVPGYVPRYA 149

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ITV+    + +   +   GL A   QHE+DHLNG++F DH++
Sbjct: 150 RITVKATTVDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 192


>gi|253733547|ref|ZP_04867712.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258423742|ref|ZP_05686628.1| polypeptide deformylase [Staphylococcus aureus A9635]
 gi|253728601|gb|EES97330.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257845974|gb|EEV70002.1| polypeptide deformylase [Staphylococcus aureus A9635]
          Length = 162

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVVKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              + A   +A  + H +D +NGI F +   R+  D 
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153


>gi|194014264|ref|ZP_03052881.1| peptide deformylase [Bacillus pumilus ATCC 7061]
 gi|194013290|gb|EDW22855.1| peptide deformylase [Bacillus pumilus ATCC 7061]
          Length = 185

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             + +V    P+LR+ +  +E     +    + +M+E + ++             G+GLA
Sbjct: 3   TMEDIVRDGHPVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDADMAEKYGLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105
           A QI V  R++ +  +D    +      NP+I++ S    +    EGCLS+ +     V 
Sbjct: 63  APQINVSKRMIAVHCEDEDGVEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGFVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   I V+      +   I   G  A   QHE+DHLNGI+F DH+ +
Sbjct: 123 RYQKIRVKGTTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169


>gi|24372647|ref|NP_716689.1| polypeptide deformylase [Shewanella oneidensis MR-1]
 gi|32363157|sp|Q8EHZ2|DEF2_SHEON RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|24346687|gb|AAN54134.1|AE015550_9 polypeptide deformylase [Shewanella oneidensis MR-1]
          Length = 181

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 5/162 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           P+ +  + IL++ +  +   +  +  L   M   M    G+G+AA Q+     L ++  +
Sbjct: 15  PIAVVGEAILKQQAIEVRDFDDTLSQLASQMAASMVEAKGVGIAAPQVHSPLALFIMASR 74

Query: 65  DHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +    +     P+V +NP+I+  S      +EGCLS+P  R  + R   I VRY +   
Sbjct: 75  PNERYPDAPLMEPLVVVNPQIVLRSLQLEKGEEGCLSVPGQRFTIWRPQTIVVRYQNLAG 134

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           Q Q     G +A   QHE DHL GI  ++     ++ ++ ++
Sbjct: 135 QWQHSELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMAQE 176


>gi|6225247|sp|O31410|DEF2_BACST RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|22219287|pdb|1LQY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Peptide
           Deformylase Complexed With Antibiotic Actinonin
 gi|2266414|emb|CAA71581.1| N-formylmethionylaminoacyl-tRNA deformylase [Geobacillus
           stearothermophilus]
          Length = 184

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++    P LR+V+ P+    + +   ++ ++L+ +  +             GIGLA
Sbjct: 3   TMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QI V  R++ + + D           NPKI++ S    +    EGCLS+  D    V 
Sbjct: 63  APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVL 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R A ITV     + +   +   GL A   QHE+DHLNGI+F D ++ 
Sbjct: 123 RYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINP 169


>gi|321315214|ref|YP_004207501.1| peptide deformylase [Bacillus subtilis BSn5]
 gi|320021488|gb|ADV96474.1| peptide deformylase [Bacillus subtilis BSn5]
          Length = 184

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             + +V    P LR  + P+E          + +M+E + ++             G+GLA
Sbjct: 3   TMENIVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105
           A QI +  R++ +  +D + +       NPKI++ S +  +    EGCLS+ +     V 
Sbjct: 63  APQINIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R + I V+      ++  I   G  A   QHE+DHLNG++F DH+ + 
Sbjct: 123 RYSRIRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|157692133|ref|YP_001486595.1| peptide deformylase [Bacillus pumilus SAFR-032]
 gi|157680891|gb|ABV62035.1| peptide deformylase [Bacillus pumilus SAFR-032]
          Length = 185

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             + +V    P+LR+ +  +E     +    + +M+E + ++             G+GLA
Sbjct: 3   TMEDIVRDGHPVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDAEMAEKFGLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105
           A QI +  R++ +  +D    +      NP+I++ S    +    EGCLS+ +     V 
Sbjct: 63  APQINISKRMIAVHCEDEDGEEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGFVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   I V+      +   I   G  A   QHE+DHLNGI+F DH+ +
Sbjct: 123 RYQKIRVKATTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169


>gi|42783070|ref|NP_980317.1| peptide deformylase [Bacillus cereus ATCC 10987]
 gi|206978074|ref|ZP_03238958.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217961461|ref|YP_002340029.1| peptide deformylase [Bacillus cereus AH187]
 gi|222097423|ref|YP_002531480.1| peptide deformylase [Bacillus cereus Q1]
 gi|229140704|ref|ZP_04269252.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST26]
 gi|229198091|ref|ZP_04324802.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1293]
 gi|42738998|gb|AAS42925.1| polypeptide deformylase [Bacillus cereus ATCC 10987]
 gi|206743701|gb|EDZ55124.1| peptide deformylase [Bacillus cereus H3081.97]
 gi|217068218|gb|ACJ82468.1| peptide deformylase [Bacillus cereus AH187]
 gi|221241481|gb|ACM14191.1| polypeptide deformylase [Bacillus cereus Q1]
 gi|228585389|gb|EEK43496.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1293]
 gi|228642776|gb|EEK99059.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST26]
 gi|324327875|gb|ADY23135.1| peptide deformylase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 184

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           A QIG+  R++ + + D           NPKII+ S + +  Q  EGCLS+  +    V 
Sbjct: 63  APQIGISKRMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|21282827|ref|NP_645915.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483378|ref|YP_040602.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486054|ref|YP_043275.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|257425268|ref|ZP_05601693.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427928|ref|ZP_05604326.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430561|ref|ZP_05606943.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433322|ref|ZP_05609680.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436164|ref|ZP_05612211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|282903768|ref|ZP_06311656.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|282905532|ref|ZP_06313387.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908508|ref|ZP_06316338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910787|ref|ZP_06318590.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913990|ref|ZP_06321777.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282918912|ref|ZP_06326647.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282924035|ref|ZP_06331711.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|283957956|ref|ZP_06375407.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501023|ref|ZP_06666874.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509982|ref|ZP_06668690.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|293526570|ref|ZP_06671255.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|295427700|ref|ZP_06820332.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297208141|ref|ZP_06924572.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297591341|ref|ZP_06949979.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300912221|ref|ZP_07129664.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|38604914|sp|Q8NX19|DEFL_STAAW RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81649434|sp|Q6G9Z8|DEFL_STAAS RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81651281|sp|Q6GHM0|DEFL_STAAR RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|21204266|dbj|BAB94963.1| MW1098 [Staphylococcus aureus subsp. aureus MW2]
 gi|49241507|emb|CAG40193.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49244497|emb|CAG42926.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|257271725|gb|EEV03863.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274769|gb|EEV06256.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278689|gb|EEV09308.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281415|gb|EEV11552.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284446|gb|EEV14566.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|282314007|gb|EFB44399.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|282316722|gb|EFB47096.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282322058|gb|EFB52382.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282325392|gb|EFB55701.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327570|gb|EFB57853.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330824|gb|EFB60338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595386|gb|EFC00350.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|283470427|emb|CAQ49638.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ST398]
 gi|283790105|gb|EFC28922.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920642|gb|EFD97705.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|291096028|gb|EFE26289.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466926|gb|EFF09444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|295128058|gb|EFG57692.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887384|gb|EFH26286.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297576227|gb|EFH94943.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|298694508|gb|ADI97730.1| probable peptide deformylase 1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886467|gb|EFK81669.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|312438408|gb|ADQ77479.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194101|gb|EFU24494.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 162

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              + A   +A  + H +D +NGI F +   R+  D 
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153


>gi|56419592|ref|YP_146910.1| peptide deformylase [Geobacillus kaustophilus HTA426]
 gi|261419255|ref|YP_003252937.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297530776|ref|YP_003672051.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|319766070|ref|YP_004131571.1| peptide deformylase [Geobacillus sp. Y412MC52]
 gi|56379434|dbj|BAD75342.1| peptide deformylase2 (PDF 2) N-formylmethionylaminoacyl-tRNA
           deformylase [Geobacillus kaustophilus HTA426]
 gi|261375712|gb|ACX78455.1| peptide deformylase [Geobacillus sp. Y412MC61]
 gi|297254028|gb|ADI27474.1| peptide deformylase [Geobacillus sp. C56-T3]
 gi|317110936|gb|ADU93428.1| peptide deformylase [Geobacillus sp. Y412MC52]
          Length = 184

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++    P LR+++ P+    + +   ++ ++L+ +  +             GIGLA
Sbjct: 3   TMKDIIKEGHPTLRKIAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QI V  R++ + + D           NPKI++ S    +    EGCLS+  D    V 
Sbjct: 63  APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R A ITV     + +   +   GL A   QHE+DHLNGI+F D ++ 
Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINP 169


>gi|314933389|ref|ZP_07840754.1| peptide deformylase [Staphylococcus caprae C87]
 gi|313653539|gb|EFS17296.1| peptide deformylase [Staphylococcus caprae C87]
          Length = 162

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL++  + + + +  + +L+ ++ + +Y+ +   ++A QIGV  R+ +
Sbjct: 1   MTVKKLVKSTHPILKKEIKTVNQYDDQLKSLLQDLEDTLYAEEAAAISAPQIGVNQRVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  INP I + SD+     EG +++P+   +V RS  I V+  D N  
Sbjct: 61  IDM----ELEGLLQLINPVIKSHSDEEITDLEGSITLPNIFGEVTRSKMIVVQCNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DHLNGILF +  +R+
Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTEKANRI 149


>gi|195330059|ref|XP_002031726.1| GM26159 [Drosophila sechellia]
 gi|194120669|gb|EDW42712.1| GM26159 [Drosophila sechellia]
          Length = 196

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 17/159 (10%)

Query: 10  PDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  +   +    +I  +ID M++V+   D +G+AA Q+G+  R++V++ ++ 
Sbjct: 13  GDPVLRQRAEEVPPEDVDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 72

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              +                 VFINP +   S   + + EGC+S+  Y A V+R   + +
Sbjct: 73  KQEQFKPEIYEERKMSTLPLAVFINPVLEIISSQVNKHPEGCMSVRGYSAQVERYDKVRI 132

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 133 RGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMD 171


>gi|229086420|ref|ZP_04218596.1| Peptide deformylase [Bacillus cereus Rock3-44]
 gi|228696936|gb|EEL49745.1| Peptide deformylase [Bacillus cereus Rock3-44]
          Length = 124

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 4/128 (3%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M E M   DG+GLAA Q+GV  ++ V+D+ D   +      INP I+    +  V  EGC
Sbjct: 1   MHETMLVADGVGLAAPQVGVSLQVAVVDIGDDTGKIE---LINPVILEKRGE-QVGPEGC 56

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           LS P    +V+R+ +I VR  +   +  ++ AD  LA  +QHE+DHL+G+LF   ++R  
Sbjct: 57  LSFPGLYGEVERAEYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLHGVLFTSKVTRYY 116

Query: 155 RDMITKKM 162
            +   ++M
Sbjct: 117 EENELEEM 124


>gi|16078520|ref|NP_389339.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309325|ref|ZP_03591172.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313652|ref|ZP_03595457.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318574|ref|ZP_03599868.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322848|ref|ZP_03604142.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6225248|sp|Q45495|DEF2_BACSU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|2633827|emb|CAB13329.1| formylmethionine deformylase A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|3282140|gb|AAC24930.1| unknown [Bacillus subtilis]
 gi|291483999|dbj|BAI85074.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
          Length = 184

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             + +V    P LR  + P+E          + +M+E + ++             G+GLA
Sbjct: 3   TMENIVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105
           A QI +  R++ +  +D + +       NPKI++ S +  +    EGCLS+ +     V 
Sbjct: 63  APQINIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R A I V+      ++  I   G  A   QHE+DHLNG++F DH+ + 
Sbjct: 123 RYARIRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|306822240|ref|ZP_07455622.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|309802249|ref|ZP_07696357.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
 gi|304554622|gb|EFM42527.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|308221132|gb|EFO77436.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
          Length = 242

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           P+V   +P+LR+ +   E   S   +  LID M   M    G+GLAA QIG+   L V+ 
Sbjct: 54  PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVVE 113

Query: 62  ----DLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
               D  D   R+       V INP           + EGCLS   Y+A  KR   IT R
Sbjct: 114 DHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDITAR 173

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + D +      +  G  A   QHE DHL+G L+ID   
Sbjct: 174 WQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDKAE 211


>gi|209736128|gb|ACI68933.1| Peptide deformylase, mitochondrial precursor [Salmo salar]
          Length = 249

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              +P+LR  +  ++        +  +I  M++VM   + +GL+A Q+GV  R++ ++  
Sbjct: 75  QVGEPVLRAQAAAVDPGAVQGPAVQEVIHTMVKVMRKFECVGLSAPQVGVPLRILALEFP 134

Query: 65  DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +                      +FINP++        ++QE C SI  + A V R   +
Sbjct: 135 ERMLEDSLPAAREARGLTAVPLRIFINPQLRVLDGRTVLFQEACESISGFSATVPRYLSV 194

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V  ++  A+       G  A  LQHE+DHL+G+L+ID + 
Sbjct: 195 EVSGLNEKAEPVTWQVSGWPARILQHEMDHLDGVLYIDRMD 235


>gi|288553244|ref|YP_003425179.1| peptide deformylase [Bacillus pseudofirmus OF4]
 gi|288544404|gb|ADC48287.1| peptide deformylase [Bacillus pseudofirmus OF4]
          Length = 179

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 17/177 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K +V    P+LR V++ +    + +    +  ML+ + ++             G+G+A
Sbjct: 3   TMKDVVREGHPVLREVAKEVPLPASKEDKETLQRMLDFVINSQDPELSEKYQLRPGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           A QIG+  R+  + + D       M   NPKII+ S + +  +  EGCLS+  D    V 
Sbjct: 63  APQIGIAKRMFAVHVADDNDNLYSMGLFNPKIISHSVEETHLESGEGCLSVDRDIPGIVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           R A ITV+  + + +   +   GL++   QHE+DHLNGI+F D +   K D   K++
Sbjct: 123 RYARITVKGTNLDGEEVTLRLRGLVSIVFQHEMDHLNGIMFYDRIEGFK-DPFKKEL 178


>gi|323692973|ref|ZP_08107194.1| peptide deformylase [Clostridium symbiosum WAL-14673]
 gi|323502974|gb|EGB18815.1| peptide deformylase [Clostridium symbiosum WAL-14673]
          Length = 150

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 7/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M  + +    D ILR+  + +++++  I  ++D+ML+ +  T +G  LA  Q+G+L RLV
Sbjct: 1   MAIRQMRYNDDEILRKRCKEVKEVDDKIRVMLDDMLDTLRHTENGAALATNQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VI      +    +  +NPKII  S       EGCLS P    +  R   +TV+ +D   
Sbjct: 61  VI-----EYCGELLKLVNPKIIGRSG-TQECIEGCLSFPGKFVNTIRPQKVTVQALDEYG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           Q  I+  +G +A C  HEL+HL+G +F+D 
Sbjct: 115 QEVILTGEGEMAKCYCHELEHLDGEIFLDK 144


>gi|212716218|ref|ZP_03324346.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660730|gb|EEB21305.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM
           16992]
          Length = 218

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+ +   E   S   +  LI+ M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAVVE 89

Query: 63  ---------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                        A      V INP       +   + EGCLS   Y+A  KR   IT R
Sbjct: 90  DHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDITAR 149

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + D + +    +  G  A   QHE DHL+G L+ID   
Sbjct: 150 WQDEDGKQHEEHLHGWPARIFQHETDHLSGELYIDKAE 187


>gi|283456600|ref|YP_003361164.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1]
 gi|283103234|gb|ADB10340.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1]
          Length = 218

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           P+V   +P+LR+ +   E   S   +  LID M   M    G+GLAA QIG+   L V+ 
Sbjct: 30  PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVVE 89

Query: 62  ----DLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
               D  D   R+       V INP           + EGCLS   Y+A  KR   IT R
Sbjct: 90  DHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDITAR 149

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + D +      +  G  A   QHE DHL+G L+ID   
Sbjct: 150 WQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDKAE 187


>gi|195499832|ref|XP_002097114.1| GE24677 [Drosophila yakuba]
 gi|194183215|gb|EDW96826.1| GE24677 [Drosophila yakuba]
          Length = 196

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 17/159 (10%)

Query: 10  PDPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  +  E I+S +I  +I+ M++V+   D +G+AA Q+G+  R++V++ ++ 
Sbjct: 13  GDPVLRQRAEEVPPEDIDSMEINQIIEGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREG 72

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              +                 VFINP++   S   + + EGC+S+  + A+V+R   + +
Sbjct: 73  KQEQFKPEVYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGFSAEVERYDKVRI 132

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R +        +  +G  A   QHE+DHLNG +++D + 
Sbjct: 133 RGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMD 171


>gi|194902258|ref|XP_001980657.1| GG17276 [Drosophila erecta]
 gi|190652360|gb|EDV49615.1| GG17276 [Drosophila erecta]
          Length = 238

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DPILR+ +  + K    + +I  +++ M++V+   + +G+AA QIGV  R++ ++ +  
Sbjct: 55  GDPILRQQAALVPKEHLDSPEIKAIVERMVKVLRKFECVGIAAPQIGVSLRIIAMEFKGR 114

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             ++ P               V INP +   +     + EGC+S+  Y A+V+R   + +
Sbjct: 115 VRKELPEVVYQARQMSELPLTVLINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGVKL 174

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D       +   G  A   QHE+DHL G L+ DH+ R
Sbjct: 175 TGLDQQGIQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214


>gi|229104578|ref|ZP_04235242.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-28]
 gi|228678825|gb|EEL33038.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-28]
          Length = 184

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     EK  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|296231447|ref|XP_002761154.1| PREDICTED: peptide deformylase, mitochondrial-like [Callithrix
           jacchus]
          Length = 243

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E+      ++  L+  +++VM     +GL+A Q+GV  +++ ++L 
Sbjct: 69  QVGDPVLRGVAAPVEREQLGGPELQRLVQRLVQVMRRQHCVGLSAPQLGVPRQVLALELT 128

Query: 65  DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
               +K P               VF+NP +         + EGC S+  + A V R   +
Sbjct: 129 QALCQKTPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  ++ N +  +  A G  A  +QHE+DHL G LFID + 
Sbjct: 189 EISGLNPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 229


>gi|291513863|emb|CBK63073.1| peptide deformylase [Alistipes shahii WAL 8301]
          Length = 202

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 10/153 (6%)

Query: 6   LVIFPDP----ILRRVSRPIE---KINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLY 56
           ++   +P    +LR+ + P+        D   L   ML  +      G+G+AA Q+G+L 
Sbjct: 42  ILTVGNPADSLVLRQKAAPVTGRMLRTDDYAVLRRRMLATVQDPQNTGVGIAAPQVGILR 101

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R++ +   D         ++NP+I+  S + +  +EGCLSIP     V R+  I +RY D
Sbjct: 102 RMIAVQRFDKPGEPFEF-YLNPEIVESSAETAPGREGCLSIPGLAGTVVRAQRIVLRYPD 160

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
                +    DG  A   QHE DHL+GIL+ D 
Sbjct: 161 ERFAEKTETIDGFTAVIFQHETDHLDGILYTDR 193


>gi|171742295|ref|ZP_02918102.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC
           27678]
 gi|171277909|gb|EDT45570.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC
           27678]
          Length = 242

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           P+V   +P+LR+ +   E   S   +  LID M   M    G+GLAA QIG+   L V+ 
Sbjct: 54  PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAVVE 113

Query: 62  ----DLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
               D  D   R+       V INP           + EGCLS   Y+A  KR   IT R
Sbjct: 114 DHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDITAR 173

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + D +      +  G  A   QHE DHL+G L+ID   
Sbjct: 174 WQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDKAE 211


>gi|282916464|ref|ZP_06324226.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|283770276|ref|ZP_06343168.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
 gi|282319904|gb|EFB50252.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|283460423|gb|EFC07513.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
          Length = 162

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVARSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              + A   +A  + H +D +NGI F +   R+  D 
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153


>gi|30022062|ref|NP_833693.1| peptide deformylase [Bacillus cereus ATCC 14579]
 gi|228941135|ref|ZP_04103690.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228954250|ref|ZP_04116277.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228974067|ref|ZP_04134639.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|229047661|ref|ZP_04193247.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH676]
 gi|229071475|ref|ZP_04204696.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           F65185]
 gi|229111445|ref|ZP_04240996.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-15]
 gi|229129252|ref|ZP_04258224.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-Cer4]
 gi|229152174|ref|ZP_04280367.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1550]
 gi|229192182|ref|ZP_04319149.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           10876]
 gi|296504467|ref|YP_003666167.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|39931053|sp|Q819K2|DEF2_BACCR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|29897619|gb|AAP10894.1| Polypeptide deformylase [Bacillus cereus ATCC 14579]
 gi|228591293|gb|EEK49145.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           10876]
 gi|228631136|gb|EEK87772.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           m1550]
 gi|228654178|gb|EEL10044.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-Cer4]
 gi|228671827|gb|EEL27120.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-15]
 gi|228711645|gb|EEL63599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           F65185]
 gi|228723682|gb|EEL75041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH676]
 gi|228785644|gb|EEM33651.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228805378|gb|EEM51970.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228818529|gb|EEM64599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|296325519|gb|ADH08447.1| peptide deformylase [Bacillus thuringiensis BMB171]
 gi|326941747|gb|AEA17643.1| peptide deformylase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 184

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|225865956|ref|YP_002751334.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|229186214|ref|ZP_04313383.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC
           6E1]
 gi|225789299|gb|ACO29516.1| peptide deformylase [Bacillus cereus 03BB102]
 gi|228597390|gb|EEK55041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC
           6E1]
          Length = 184

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           A QIG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|332305299|ref|YP_004433150.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172628|gb|AEE21882.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 183

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 6   LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +    + IL ++++P+ +    +      +D +L  M + +G+G+AA Q+     +++I 
Sbjct: 3   IAQVGETILHQIAKPVAEEAIKSDAFQAFVDELLSTMQNANGVGIAAPQVFDERAVMIIA 62

Query: 63  LQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +  +   N     P+V INPK+I  + +     EGCLS+P  R  ++R++++ + Y   
Sbjct: 63  SRPSSRYPNAPEMEPLVLINPKVIQSAQESVKDWEGCLSVPGLRGYIRRASWVEIAYQQR 122

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +         G +A    HE DHL G  ++DH+ 
Sbjct: 123 DGSQVSTRLSGFVARIFLHEFDHLIGKTWLDHVE 156


>gi|194468417|ref|ZP_03074403.1| peptide deformylase [Lactobacillus reuteri 100-23]
 gi|194453270|gb|EDX42168.1| peptide deformylase [Lactobacillus reuteri 100-23]
          Length = 186

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 19/168 (11%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +    +P+LR+ +  +   ++ +   L  +M+E +  +             G+GLAA 
Sbjct: 5   KDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMEYLEVSQDPELCEKYKLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104
           Q+GV  ++  + +   A  + P+   V INP I++ S  +      EGCLS+  D    V
Sbjct: 65  QVGVSKQMAAVLVPAPAEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 124

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 125 PRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172


>gi|302563993|ref|NP_001181771.1| peptide deformylase, mitochondrial [Macaca mulatta]
          Length = 243

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L 
Sbjct: 69  QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPLQVLALELP 128

Query: 65  DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   R+ P               VF+NP +         + EGC S+  + A V R   +
Sbjct: 129 EALCREFPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  +D N +     A G  A  +QHE+DHL G LFID + 
Sbjct: 189 QISGLDPNGEQVAWQASGWAARIIQHEMDHLQGCLFIDKMD 229


>gi|296331515|ref|ZP_06873986.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674182|ref|YP_003865854.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151328|gb|EFG92206.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412426|gb|ADM37545.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 184

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             + +V    P LR  + P+E          + +M+E + ++             G+GLA
Sbjct: 3   TMENIVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105
           A QI +  R++ +  +D + +       NPKI++ S +  +    EGCLS+ +     V 
Sbjct: 63  APQINIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R A I V+      ++  I   G  A   QHE+DHLNG++F DH+ + 
Sbjct: 123 RYARIRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|312868986|ref|ZP_07729164.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
 gi|311095489|gb|EFQ53755.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
          Length = 186

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 19/170 (11%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+ +  +   ++ +   L   M+E +  +             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRKRAAKVSFPLSDEDQELAKKMMEYLEVSQDPELCEKYKLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104
           Q+GV  ++  + +        P    V INP I++ S  +      EGCLS+  D    V
Sbjct: 65  QVGVSKQMAAVLVPATEEGGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 124

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++ K
Sbjct: 125 PRHDRITLRYQDTNGEKHQVRLKNYPAIVCQHEIDHLHGMLFYDHINKQK 174


>gi|195055504|ref|XP_001994657.1| GH17361 [Drosophila grimshawi]
 gi|193892420|gb|EDV91286.1| GH17361 [Drosophila grimshawi]
          Length = 234

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----- 61
            DP+LR  +  +      + +I  ++D M+ V+   D +G+AA QIGV  R++ +     
Sbjct: 51  GDPVLRDRAAEVPADCVNSKEIHAIVDQMVHVLRKFDCVGIAAPQIGVSLRIIAMEFRRS 110

Query: 62  ---DLQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              DL D  +++  M      V INP++   +     + EGC+S+  + A+V+R   + +
Sbjct: 111 IKKDLSDATYKRRQMSELPLTVLINPQLTVTNYTKHKHPEGCMSVRGFSAEVERYEGVKL 170

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D    H  +   G  A   QHE++HL+G L+ DH+ R
Sbjct: 171 SGLDRQGVHSELELSGWNARIAQHEMEHLDGKLYTDHMDR 210


>gi|228909800|ref|ZP_04073623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 200]
 gi|228850089|gb|EEM94920.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 200]
          Length = 184

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|218899130|ref|YP_002447541.1| peptide deformylase [Bacillus cereus G9842]
 gi|228902480|ref|ZP_04066634.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 4222]
 gi|228966997|ref|ZP_04128035.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218546057|gb|ACK98451.1| peptide deformylase [Bacillus cereus G9842]
 gi|228792731|gb|EEM40295.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228857224|gb|EEN01730.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis IBL 4222]
          Length = 184

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     EK  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|165760871|pdb|2OKL|A Chain A, Crystal Structure Of Peptide Deformylase 2 With Actinonin
           From Bacillus Cereus
 gi|165760872|pdb|2OKL|B Chain B, Crystal Structure Of Peptide Deformylase 2 With Actinonin
           From Bacillus Cereus
          Length = 185

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 4   TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 63

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V 
Sbjct: 64  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 124 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 171


>gi|229180249|ref|ZP_04307593.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           172560W]
 gi|228603458|gb|EEK60935.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           172560W]
          Length = 184

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|311063862|ref|YP_003970587.1| peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|310866181|gb|ADP35550.1| Peptide deformylase [Bifidobacterium bifidum PRL2010]
          Length = 217

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 14/161 (8%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
             P+V   +P+LR+  + ++         +  LID M   M    G+GLAA QIG+   L
Sbjct: 28  ILPIVQAGEPVLRQ--QTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLAL 85

Query: 59  VVIDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
            V++        +P         V INP      D    + EGCLS   Y+A  +R   I
Sbjct: 86  AVVEDHVRDDEDDPREIAEFPFHVIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDI 145

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           T R+ D N +       G  A   QHE DHL+G L+ID   
Sbjct: 146 TARWADENGKQHEERLHGWPARIFQHETDHLSGELYIDKAE 186


>gi|118479185|ref|YP_896336.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam]
 gi|196045777|ref|ZP_03113006.1| peptide deformylase [Bacillus cereus 03BB108]
 gi|118418410|gb|ABK86829.1| polypeptide deformylase [Bacillus thuringiensis str. Al Hakam]
 gi|196023217|gb|EDX61895.1| peptide deformylase [Bacillus cereus 03BB108]
          Length = 184

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           A QIG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|226438315|pdb|3G5K|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438316|pdb|3G5K|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438317|pdb|3G5K|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438318|pdb|3G5K|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438319|pdb|3G5P|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438320|pdb|3G5P|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438321|pdb|3G5P|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 gi|226438322|pdb|3G5P|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
          Length = 183

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +++ ++L 
Sbjct: 9   QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 68

Query: 65  DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +   R+ P               VF+NP +         + EGC S+  + A V R   +
Sbjct: 69  EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 128

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  +D N +  +  A G  A  +QHE+DHL G LFID + 
Sbjct: 129 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 169


>gi|218231086|ref|YP_002368775.1| peptide deformylase [Bacillus cereus B4264]
 gi|218159043|gb|ACK59035.1| peptide deformylase [Bacillus cereus B4264]
          Length = 184

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEDVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|294498110|ref|YP_003561810.1| peptide deformylase [Bacillus megaterium QM B1551]
 gi|295703459|ref|YP_003596534.1| peptide deformylase [Bacillus megaterium DSM 319]
 gi|294348047|gb|ADE68376.1| peptide deformylase [Bacillus megaterium QM B1551]
 gi|294801118|gb|ADF38184.1| peptide deformylase [Bacillus megaterium DSM 319]
          Length = 184

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++    P LR V++ +    + +   ++ ++LE + ++             GIGLAA Q
Sbjct: 6   DIIQDGHPTLREVAKEVPLPASEEDKKILHSLLEYVKNSQDPEIAAKYGLRSGIGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108
           I V  R++ + + D   +       NPKII+ S +  +    EGCLS+  D    V R A
Sbjct: 66  INVSKRMIGVHVTDEKGKLYSYALFNPKIISHSVEKTYLTGGEGCLSVDQDIPGFVPRYA 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ITV+      +   I   GL A   QHE+DHL+GI+F D++++ 
Sbjct: 126 RITVKGTTLEGEEVKIRLKGLPAVVFQHEIDHLDGIMFYDYINKE 170


>gi|224282525|ref|ZP_03645847.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171]
 gi|310286987|ref|YP_003938245.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|313139678|ref|ZP_07801871.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171]
 gi|309250923|gb|ADO52671.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|313132188|gb|EFR49805.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171]
          Length = 217

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 70/161 (43%), Gaps = 14/161 (8%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
             P+V   +P+LR+  + ++         +  LID M   M    G+GLAA QIG+   L
Sbjct: 28  ILPIVQAGEPVLRQ--QTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLAL 85

Query: 59  VVIDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
            V++        +P           INP      D    + EGCLS   Y+A  +R   I
Sbjct: 86  AVVEDHVRDDEDDPREIAEFPFHAIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDI 145

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           T R+ D N +       G  A   QHE DHL+G L+ID   
Sbjct: 146 TARWTDENGKQHEERLHGWPARIFQHETDHLSGELYIDKAE 186


>gi|89099513|ref|ZP_01172388.1| peptide deformylase [Bacillus sp. NRRL B-14911]
 gi|89085666|gb|EAR64792.1| peptide deformylase [Bacillus sp. NRRL B-14911]
          Length = 184

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 16/175 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
               ++    P LR+ +  +    +++    +  M+E + ++             GIGLA
Sbjct: 3   TVADIIRDGHPSLRKTAEEVPMPPSAEDKQTLAEMMEYVRNSQNPALAEKYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPD-YRADVK 105
           A QI  L R++ + + D   +       NPKI++ S + +     EGCLS+ + +   V 
Sbjct: 63  APQIDCLKRMIAVHVTDTDGKLYSFALFNPKIVSHSVEKAFLTSGEGCLSVDEPFPGFVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           R A IT++  D + +   +   GL A   QHE+DHLNG++F DH+++     I K
Sbjct: 123 RYARITLKAFDIDGREVKLRLRGLPAIVFQHEIDHLNGVMFYDHINKENPFEIMK 177


>gi|242373503|ref|ZP_04819077.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1]
 gi|242348866|gb|EES40468.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1]
          Length = 162

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +K LV    PIL++   P+ + + ++  L+ ++ + +Y+ +   + A QI V  R+ +
Sbjct: 1   MTRKKLVKSSHPILKKEIAPVTEFDENLSLLLKDLEDTLYAEEAAAICAPQINVNQRVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+         +  INP + + SD+     EG +++P+   +V RS  I ++  D N  
Sbjct: 61  IDM----EMDGLLQLINPVVQSQSDEMITDLEGSITLPNTFGEVNRSKMIVIQSSDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DHLNGILF +  +RL
Sbjct: 117 QVELTAYDDVARMILHMIDHLNGILFTEKANRL 149


>gi|258438742|ref|ZP_05689895.1| formylmethionine deformylase [Staphylococcus aureus A9299]
 gi|257848001|gb|EEV71994.1| formylmethionine deformylase [Staphylococcus aureus A9299]
          Length = 162

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ ++  +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  +NPKII+ S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDM----EMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVIRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              + A   +A  + H +D +NGI F +   R+  D 
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153


>gi|195389911|ref|XP_002053615.1| GJ23993 [Drosophila virilis]
 gi|194151701|gb|EDW67135.1| GJ23993 [Drosophila virilis]
          Length = 234

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----- 61
            DP+LR  +   P E ++S ++  ++D M+ V+   D +G+AA QIG+  R++ +     
Sbjct: 51  GDPVLRDRAAVVPAECVDSKEVQAIVDQMVHVLRKFDCVGIAAPQIGISLRIIAMEFRRS 110

Query: 62  ---DLQDHAHRKNPM------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              DL +  ++   M      V INPK+   +     + EGC+S+  Y A+V+R   + +
Sbjct: 111 IKQDLSEATYKARQMSELPLTVLINPKLTVTNYTKHKHPEGCMSVRGYSAEVERYEGVKL 170

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++    H  +   G  A   QHE+DHL+G L+ DH+ R
Sbjct: 171 SGVNRQGAHSELELSGWNARIAQHEMDHLDGKLYTDHMDR 210


>gi|229174643|ref|ZP_04302171.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3]
 gi|228608845|gb|EEK66139.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3]
          Length = 184

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSIPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           A QIG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|229031607|ref|ZP_04187606.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1271]
 gi|228729701|gb|EEL80682.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1271]
          Length = 184

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVSMPASEEDTTALKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           A QIG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|227544835|ref|ZP_03974884.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
 gi|227185182|gb|EEI65253.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
          Length = 183

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 19/168 (11%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +    +P+LR+ +  +   ++ +   L  +M++ +  +             G+GLAA 
Sbjct: 2   KDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAAP 61

Query: 51  QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104
           Q+GV  ++  + +   A  + P+   V INP I++ S  +      EGCLS+  D    V
Sbjct: 62  QVGVSKQMAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 121

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 122 PRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 169


>gi|271969762|ref|YP_003343958.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021]
 gi|270512937|gb|ACZ91215.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021]
          Length = 174

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 6/156 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVV 60
             + L+  P P+L   +R ++  +  ++    ++L  M  +    GLAA QIG+ +RL+ 
Sbjct: 8   TPRELIAAPHPVLTARARAVDPADPRVVVAAADLLATMRRARHCTGLAAPQIGLDWRLLS 67

Query: 61  IDLQDHAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +D+  H   +     +V  NP+++  S  +   +EGCLS+P    DV R+  ITVR    
Sbjct: 68  VDVSLHPGARSCAGELVVANPRLVAAS-RWEPAREGCLSVPGLTGDVLRATRITVRGERP 126

Query: 118 -NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                  I AD   A C+QH+LDHL+G+LF+D ++R
Sbjct: 127 GTGAPVTIDADAFEARCIQHQLDHLDGVLFLDRVTR 162


>gi|229117467|ref|ZP_04246841.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-3]
 gi|228665972|gb|EEL21440.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock1-3]
          Length = 181

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 4   KPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAV 50
           K ++   DPILR V+  +     EK  + +  +I+         M E      GIGLAA 
Sbjct: 2   KDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAP 61

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRS 107
           QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V R 
Sbjct: 62  QIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPRY 121

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 122 TRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|302870289|ref|YP_003838926.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315503435|ref|YP_004082322.1| formylmethionine deformylase [Micromonospora sp. L5]
 gi|302573148|gb|ADL49350.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315410054|gb|ADU08171.1| formylmethionine deformylase [Micromonospora sp. L5]
          Length = 187

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 83/154 (53%), Gaps = 6/154 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVV 60
             + +V  P+P+L R    ++  +++++ L  +++  M  + G +GLAA Q+GV  ++  
Sbjct: 22  AVRAVVTAPEPVLSRPGPEVDPTSAEVVRLAADLVATMRVSPGCVGLAAPQVGVSAQVFA 81

Query: 61  IDLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MD 116
           +D+  H          V  N +++  S  +   +EGC+S+PD   DVKR++ + V   + 
Sbjct: 82  VDVTGHPKAVTVHGTFVLCNARVVEAS-RWKAGREGCMSVPDLTGDVKRASRLVVEGALP 140

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + +   +  DG  A  LQHE+DH  G+LF+D +
Sbjct: 141 GSGEPVRLVTDGFEARALQHEIDHCAGLLFLDRV 174


>gi|52141515|ref|YP_085313.1| peptide deformylase [Bacillus cereus E33L]
 gi|51974984|gb|AAU16534.1| polypeptide deformylase [Bacillus cereus E33L]
          Length = 184

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR+V+  +     ++  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRKVAEEVVIPASKEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           A QIG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|89900986|ref|YP_523457.1| peptide deformylase [Rhodoferax ferrireducens T118]
 gi|89345723|gb|ABD69926.1| Peptide deformylase [Rhodoferax ferrireducens T118]
          Length = 186

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 73/173 (42%), Gaps = 14/173 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R++ P+   +  ++  LI +ML+ M + DG GLAA QIGV  +LV
Sbjct: 1   MAIREILKMGDPRLLRIAPPVTLFDTDELHLLISDMLDTMLAADGAGLAAPQIGVDLQLV 60

Query: 60  VIDLQ------DHAHRKNPMVFINPKIITFSDDF-------SVYQEGCLSIPDYRADVKR 106
           +            A      V +NP I                  EGCLS+P  RA V R
Sbjct: 61  IFGSNARNPRYPQAPVVPQTVLLNPVITPLPPSENDATPLQVEDWEGCLSVPGLRAMVPR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            A I     D          +G  A  +QHE DHL G L+   +    R   T
Sbjct: 121 FARIRYTGFDQYGDPINRTVEGFHARVVQHECDHLIGKLYPMRVRDFSRFGFT 173


>gi|300909945|ref|ZP_07127405.1| peptide deformylase [Lactobacillus reuteri SD2112]
 gi|300892593|gb|EFK85953.1| peptide deformylase [Lactobacillus reuteri SD2112]
          Length = 186

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 19/168 (11%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +    +P+LR+ +  +   ++ +   L  +M++ +  +             G+GLAA 
Sbjct: 5   KDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104
           Q+GV  ++  + +   A  + P+   V INP I++ S  +      EGCLS+  D    V
Sbjct: 65  QVGVSKQMAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 124

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 125 PRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172


>gi|225351798|ref|ZP_03742821.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158142|gb|EEG71425.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 218

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 70/158 (44%), Gaps = 11/158 (6%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR+ +   E   S   +  LI+ M   M    G+GLAA QIG+   L V++
Sbjct: 30  PIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAVVE 89

Query: 63  ---------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                        A      V INP       +   + EGCLS   Y+A  KR   I  R
Sbjct: 90  DHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDIIAR 149

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + D + +    +  G  A   QHE DHL+G L+ID   
Sbjct: 150 WQDEDGKQHEEHLHGWPARIFQHETDHLSGELYIDKAE 187


>gi|229098440|ref|ZP_04229384.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-29]
 gi|228684963|gb|EEL38897.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-29]
          Length = 182

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 4   KPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAV 50
           K ++   DPILR V+  +     EK  + +  +I+         M E      GIGLAA 
Sbjct: 2   KDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAP 61

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRS 107
           QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V R 
Sbjct: 62  QIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPRY 121

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 122 TRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|302523131|ref|ZP_07275473.1| polypeptide deformylase [Streptomyces sp. SPB78]
 gi|302432026|gb|EFL03842.1| polypeptide deformylase [Streptomyces sp. SPB78]
          Length = 214

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE--VMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  + P E    + +           M    G+GLAA QIGV  RL V++
Sbjct: 25  PIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 84

Query: 63  LQDHAHRKNP----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                  +             V +NP      +  + + EGCLS+P ++A V R A + +
Sbjct: 85  DPATVPEEVRRVREREPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           R  D +         G  A  +QHE DHL+G L++D 
Sbjct: 145 RAEDEHGTALDEEVRGWPARIVQHETDHLDGTLYVDR 181


>gi|228922725|ref|ZP_04086023.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228960236|ref|ZP_04121893.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228980660|ref|ZP_04140967.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis Bt407]
 gi|229081226|ref|ZP_04213735.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock4-2]
 gi|229146546|ref|ZP_04274916.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST24]
 gi|228636908|gb|EEK93368.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST24]
 gi|228702088|gb|EEL54565.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock4-2]
 gi|228779064|gb|EEM27324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis Bt407]
 gi|228799504|gb|EEM46464.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228836780|gb|EEM82123.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 181

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 4   KPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAV 50
           K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLAA 
Sbjct: 2   KDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAP 61

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRS 107
           QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V R 
Sbjct: 62  QIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPRY 121

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 122 TRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|119026311|ref|YP_910156.1| peptide deformylase [Bifidobacterium adolescentis ATCC 15703]
 gi|154488206|ref|ZP_02029323.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis
           L2-32]
 gi|158512525|sp|A1A2Z1|DEF_BIFAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|118765895|dbj|BAF40074.1| peptide deformylase 1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154083357|gb|EDN82402.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis
           L2-32]
          Length = 218

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 70/157 (44%), Gaps = 11/157 (7%)

Query: 3   KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+  ++   +     +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  IMPIVQAGEPVLRQQTIAYDGQLSRKTLDKLIDTMRTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  I--------DLQDHAHRKNPMV-FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +        D       + P    INP       +   + EGCLS   Y+A  KR   IT
Sbjct: 88  VEDHVCEGDDGDPREAAEFPFHAIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDIT 147

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            R+ D +      +  G  A   QHE DHL+G L+ID
Sbjct: 148 ARWQDEDGNKHEEHLHGWPARIFQHETDHLSGELYID 184


>gi|311257108|ref|XP_003126954.1| PREDICTED: peptide deformylase, mitochondrial-like [Sus scrofa]
          Length = 249

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP LR V+ P+E       ++  L+  +++VM     +GL+A Q+GV  +++ ++  
Sbjct: 75  QVGDPALRAVAAPVEPAQLAGPELQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLALEFP 134

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D                      VF+NP +         + EGC S+  + A V R   +
Sbjct: 135 DALFHACAPRLREIRQMEPFPLHVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 194

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  +D   +  +  A G  A  +QHE+DHL G+LFID + 
Sbjct: 195 QISGLDPRGEPVVWQASGWAARIIQHEMDHLQGLLFIDKMD 235


>gi|82750819|ref|YP_416560.1| peptide deformylase [Staphylococcus aureus RF122]
 gi|82656350|emb|CAI80768.1| probable peptide deformylase 1 [Staphylococcus aureus RF122]
 gi|323440990|gb|EGA98697.1| peptide deformylase [Staphylococcus aureus O11]
 gi|323442306|gb|EGA99936.1| peptide deformylase [Staphylococcus aureus O46]
          Length = 162

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  +NPKII  S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDM----EMEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              + A   +A  + H +D +NGI F +   R+  D 
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTDK 153


>gi|195389909|ref|XP_002053614.1| GJ23992 [Drosophila virilis]
 gi|194151700|gb|EDW67134.1| GJ23992 [Drosophila virilis]
          Length = 203

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 17/159 (10%)

Query: 10  PDPILRRVSRPI--EKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR  +  +  E+++S +I +++D M++V+   D +G+AA Q+GV  R++V++ ++ 
Sbjct: 20  GDPVLRVRAEEVPPERLDSHEINDIVDQMVKVLRHYDCVGVAAPQLGVPLRIIVMEFREG 79

Query: 67  AH-----------RKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                        + +P+   VFINPKI   +D    + EGC+S+  +   V R   + V
Sbjct: 80  KRAQFTAEDYEQRKMSPLPLSVFINPKIEIITDAQHTHPEGCMSVRGFSGQVARYDRVRV 139

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +        +   G  A   QHE+DHLNGI+++D + 
Sbjct: 140 TGIGMLGTPSELELVGWSARIAQHEMDHLNGIIYVDRMD 178


>gi|259503065|ref|ZP_05745967.1| peptide deformylase [Lactobacillus antri DSM 16041]
 gi|259168931|gb|EEW53426.1| peptide deformylase [Lactobacillus antri DSM 16041]
          Length = 196

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 19/168 (11%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+ +  +   ++ +   L   M+E +  +             G+GLAA 
Sbjct: 15  KDIVRDGDPVLRKRAAKVSFPLSDEDQTLAKKMMEYLEVSQDPQLCEKYKLRAGVGLAAP 74

Query: 51  QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104
           Q+GV  ++  + +        P    V INP I++ S  +      EGCLS+  D    V
Sbjct: 75  QVGVSKQMAAVLVPATEEDGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 134

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 135 PRHDRITLRYQDTNGEQHQVRLKNYPAIVCQHEIDHLHGMLFYDHINK 182


>gi|30264046|ref|NP_846423.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47529482|ref|YP_020831.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186882|ref|YP_030134.1| peptide deformylase [Bacillus anthracis str. Sterne]
 gi|49478480|ref|YP_038035.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65321366|ref|ZP_00394325.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis
           str. A2012]
 gi|165872897|ref|ZP_02217522.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167633479|ref|ZP_02391803.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|167639508|ref|ZP_02397779.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|170687132|ref|ZP_02878350.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|170705828|ref|ZP_02896291.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|177655203|ref|ZP_02936812.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190566155|ref|ZP_03019074.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|196035869|ref|ZP_03103271.1| peptide deformylase [Bacillus cereus W]
 gi|196038641|ref|ZP_03105949.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|218905105|ref|YP_002452939.1| peptide deformylase [Bacillus cereus AH820]
 gi|227816748|ref|YP_002816757.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|228916611|ref|ZP_04080177.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228935289|ref|ZP_04098115.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947693|ref|ZP_04109983.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229093023|ref|ZP_04224154.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-42]
 gi|229603739|ref|YP_002868274.1| peptide deformylase [Bacillus anthracis str. A0248]
 gi|254683741|ref|ZP_05147601.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066]
 gi|254721576|ref|ZP_05183365.1| peptide deformylase [Bacillus anthracis str. A1055]
 gi|254736086|ref|ZP_05193792.1| peptide deformylase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743977|ref|ZP_05201660.1| peptide deformylase [Bacillus anthracis str. Kruger B]
 gi|254754244|ref|ZP_05206279.1| peptide deformylase [Bacillus anthracis str. Vollum]
 gi|254758065|ref|ZP_05210092.1| peptide deformylase [Bacillus anthracis str. Australia 94]
 gi|301055465|ref|YP_003793676.1| peptide deformylase [Bacillus anthracis CI]
 gi|39931064|sp|Q81MQ9|DEF2_BACAN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|30258691|gb|AAP27909.1| peptide deformylase [Bacillus anthracis str. Ames]
 gi|47504630|gb|AAT33306.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180809|gb|AAT56185.1| polypeptide deformylase [Bacillus anthracis str. Sterne]
 gi|49330036|gb|AAT60682.1| polypeptide deformylase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|164711384|gb|EDR16936.1| peptide deformylase [Bacillus anthracis str. A0488]
 gi|167512567|gb|EDR87942.1| peptide deformylase [Bacillus anthracis str. A0193]
 gi|167530885|gb|EDR93572.1| peptide deformylase [Bacillus anthracis str. A0442]
 gi|170129368|gb|EDS98232.1| peptide deformylase [Bacillus anthracis str. A0389]
 gi|170668749|gb|EDT19494.1| peptide deformylase [Bacillus anthracis str. A0465]
 gi|172080253|gb|EDT65344.1| peptide deformylase [Bacillus anthracis str. A0174]
 gi|190563074|gb|EDV17040.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I]
 gi|195991518|gb|EDX55484.1| peptide deformylase [Bacillus cereus W]
 gi|196030364|gb|EDX68963.1| peptide deformylase [Bacillus cereus NVH0597-99]
 gi|218537238|gb|ACK89636.1| peptide deformylase [Bacillus cereus AH820]
 gi|227006107|gb|ACP15850.1| peptide deformylase [Bacillus anthracis str. CDC 684]
 gi|228690394|gb|EEL44180.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-42]
 gi|228812213|gb|EEM58544.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824454|gb|EEM70260.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228843190|gb|EEM88272.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268147|gb|ACQ49784.1| peptide deformylase [Bacillus anthracis str. A0248]
 gi|300377634|gb|ADK06538.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI]
          Length = 184

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           A QIG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|206971224|ref|ZP_03232175.1| peptide deformylase [Bacillus cereus AH1134]
 gi|206733996|gb|EDZ51167.1| peptide deformylase [Bacillus cereus AH1134]
          Length = 184

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   +PILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGNPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|75762798|ref|ZP_00742622.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74489709|gb|EAO53101.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 221

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     EK  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIGV  +++ + + D           NPKII+ S +  +    EGCLS+  +    V 
Sbjct: 63  APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|183602110|ref|ZP_02963478.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683022|ref|YP_002469405.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191342|ref|YP_002968736.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196748|ref|YP_002970303.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218603|gb|EDT89246.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620672|gb|ACL28829.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249734|gb|ACS46674.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251302|gb|ACS48241.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177468|gb|ADC84714.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794335|gb|ADG33870.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9]
          Length = 217

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 11/157 (7%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR      +   S   +  LI+ M + M    G+GLA  QIG+   + V
Sbjct: 27  VLPIVEAGEPVLREQCVRYDGQLSKHTLHKLIETMHKTMLDAPGVGLAGPQIGLNLAIAV 86

Query: 61  I-DLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           + D  +     +P           INP      ++   + EGCLS   Y+A  KR   I 
Sbjct: 87  VEDHANGDDDGDPREIAEFPFHAIINPVYRPAGEETRSFYEGCLSFDGYQAVRKRYLDII 146

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             + D + +    +  G  A   QHE DHL+G L+ID
Sbjct: 147 AHWHDEDGKEHEEHLHGWPARIFQHETDHLSGELYID 183


>gi|119910219|ref|XP_001255524.1| PREDICTED: peptide deformylase-like [Bos taurus]
 gi|119936845|ref|XP_001251630.1| PREDICTED: peptide deformylase-like [Bos taurus]
 gi|297485396|ref|XP_002694953.1| PREDICTED: peptide deformylase-like [Bos taurus]
 gi|296478169|gb|DAA20284.1| peptide deformylase-like [Bos taurus]
          Length = 250

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP LR V+ P+E       ++  L++ +++VM     +GL+A Q+GV  +++ ++  
Sbjct: 76  QVGDPALRAVAAPVEPAQLAGPELQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLALEFP 135

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +                      VF+NP +         + EGC S+  + A V R   +
Sbjct: 136 ETLFRACAPRVREARQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 195

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  +D   +  +  A G  A  +QHE+DHL G LFID + 
Sbjct: 196 QISGLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 236


>gi|302332819|gb|ADL23012.1| putative polypeptide deformylase [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 162

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL + ++ + K +  +  L+ ++ + MY+ +  GL A QI    ++ +
Sbjct: 1   MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  +NPKII  S++     EG +++PD   +V RS  I V   D N  
Sbjct: 61  IDM----EMEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              + A   +A  + H +D +NGI F +   R+  + 
Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRILTEK 153


>gi|318057272|ref|ZP_07975995.1| peptide deformylase [Streptomyces sp. SA3_actG]
 gi|318076700|ref|ZP_07984032.1| peptide deformylase [Streptomyces sp. SA3_actF]
          Length = 214

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE--VMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   DP+LR  + P E    + +           M    G+GLAA QIGV  RL V++
Sbjct: 25  PIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 84

Query: 63  LQ-------DHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                         + P+   V +NP      +  + + EGCLS+P ++A V R A + +
Sbjct: 85  DPATVPEEVRRVRERAPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVVRL 144

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           R  D + +       G  A  +QHE DHL+G L++D 
Sbjct: 145 RAEDEHGRALDEEVRGWSARIVQHETDHLDGTLYVDR 181


>gi|47565850|ref|ZP_00236889.1| polypeptide deformylase [Bacillus cereus G9241]
 gi|47557130|gb|EAL15459.1| polypeptide deformylase [Bacillus cereus G9241]
          Length = 184

 Score =  143 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48
             K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLA
Sbjct: 3   TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           A QIG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V 
Sbjct: 63  APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170


>gi|56964188|ref|YP_175919.1| peptide deformylase [Bacillus clausii KSM-K16]
 gi|81678844|sp|Q5WFA2|DEF_BACSK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56910431|dbj|BAD64958.1| peptide deformylase [Bacillus clausii KSM-K16]
          Length = 183

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 16/166 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V   +PILR+V+ P+E  +  +    + +MLE + ++             G+GLAA Q
Sbjct: 6   DIVREGNPILRKVAEPVELPLTDEDKQTLVDMLEFIKNSQDPEIAEKYGLRPGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSA 108
           IG+  RL  I   D       M   NPK+++ S + +  +  EGCLS+  D    V R A
Sbjct: 66  IGISKRLFAIHATDENGNLYSMGIANPKVVSHSVETNELENGEGCLSVDRDVPGLVPRRA 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            +T+  +D       +   G +A   QHELDHL+GI+F D +  L+
Sbjct: 126 RLTITGVDHEGNDVRMRLRGYIAIVFQHELDHLDGIMFYDRIEGLE 171


>gi|327287510|ref|XP_003228472.1| PREDICTED: peptide deformylase, mitochondrial-like [Anolis
           carolinensis]
          Length = 236

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR ++ P+E       D+  LI  ++ +M     + L+A Q+G+  ++ V +  
Sbjct: 62  QVGDPVLRSLAAPVEPSQVTGKDVQALIQRLVRLMRRERCVALSAPQVGIPLQVFVAEYP 121

Query: 65  DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
                ++P               VFINP +         + EGC S+  + A V R   +
Sbjct: 122 TRLLEEHPPDVRQARQMAPFPLRVFINPTMRVLDSQVVSHPEGCRSVHGFSACVPRFLAV 181

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V  ++   +     A G  A  +QHE+DHL GIL++D + 
Sbjct: 182 QVAGLNEAGEESSWEACGWAARIVQHEMDHLQGILYVDRME 222


>gi|148543862|ref|YP_001271232.1| peptide deformylase [Lactobacillus reuteri DSM 20016]
 gi|184153262|ref|YP_001841603.1| peptide deformylase [Lactobacillus reuteri JCM 1112]
 gi|227364768|ref|ZP_03848817.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|325682605|ref|ZP_08162122.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
 gi|167012064|sp|A5VJ71|DEF_LACRD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229487489|sp|B2G6P1|DEF_LACRJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148530896|gb|ABQ82895.1| peptide deformylase [Lactobacillus reuteri DSM 20016]
 gi|183224606|dbj|BAG25123.1| N-formylmethionyl-tRNA deformylase [Lactobacillus reuteri JCM 1112]
 gi|227070227|gb|EEI08601.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|324978444|gb|EGC15394.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
          Length = 186

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 19/168 (11%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +    +P+LR+ +  +   ++ +   L  +M++ +  +             G+GLAA 
Sbjct: 5   KDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMKYLEVSQDPELCKKYKLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104
           Q+GV  ++  + +      + P+   V INP I++ S  +      EGCLS+  D    V
Sbjct: 65  QVGVSKQMAAVLVPAPDEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYV 124

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT+RY D N +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 125 PRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172


>gi|228929021|ref|ZP_04092053.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229123495|ref|ZP_04252694.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           95/8201]
 gi|228659982|gb|EEL15623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           95/8201]
 gi|228830828|gb|EEM76433.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 181

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 16/166 (9%)

Query: 4   KPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAV 50
           K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLAA 
Sbjct: 2   KDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAP 61

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRS 107
           QIG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V R 
Sbjct: 62  QIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVPRY 121

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 122 TRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|73957448|ref|XP_853641.1| PREDICTED: similar to peptide deformylase-like protein [Canis
           familiaris]
          Length = 242

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP LR V+ P+E        +  L+  +++VM     +GL+A Q+GV  +++  +  
Sbjct: 68  QVGDPALRTVAAPVEPAQLAGPQLQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLAFEFP 127

Query: 65  D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +                      V +NP +         + EGC S+  + A V R   +
Sbjct: 128 EALFRACAPRLRETRQMEPFPLRVVVNPSLRVLDSRRVTFPEGCESVAGFLACVPRFQAV 187

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  +D   +  +  A G  A  +QHE+DHL G LFID + 
Sbjct: 188 QISGLDPKGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 228


>gi|119494635|ref|ZP_01624754.1| peptide deformylase [Lyngbya sp. PCC 8106]
 gi|119452038|gb|EAW33257.1| peptide deformylase [Lyngbya sp. PCC 8106]
          Length = 143

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 51/125 (40%), Positives = 72/125 (57%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +    D +LR+ ++ I +++ D   LI  ML+ MYS DGIGLAA Q+GV  +L+VID + 
Sbjct: 19  IHYLGDRVLRQSAKRISRVDDDTRRLIREMLQTMYSADGIGLAAPQVGVQKQLIVIDCEP 78

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P++ INP I   S + S +QEGCLSIP    DV R   I V + D   + + I 
Sbjct: 79  DNAATPPLILINPTIKKSSQEISPFQEGCLSIPGVYMDVTRPEVIEVSFKDETGRPRTIR 138

Query: 126 ADGLL 130
           A+ LL
Sbjct: 139 ANELL 143


>gi|295397404|ref|ZP_06807493.1| peptide deformylase [Aerococcus viridans ATCC 11563]
 gi|294974368|gb|EFG50106.1| peptide deformylase [Aerococcus viridans ATCC 11563]
          Length = 205

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 21/173 (12%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             + ++    P LR+ +  I   ++ +I  L D+M+E + ++             G+G+A
Sbjct: 18  TMEDIIREGHPTLRKKAEKITFPVSEEIRQLADDMMEFLRNSQDEELAEKYGLRGGVGIA 77

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNP-----MVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           A Q+ V  ++  + + D    +N       VF+NP++++ S +       EGCLS+  D 
Sbjct: 78  APQLDVSIQMTALLVPDLMDPENAEPLLNGVFLNPRVVSHSVEGVCLREGEGCLSVDRDV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              V R A ITV Y D +         G  A  LQHE+DHLNGI+F DH+S  
Sbjct: 138 PGYVPRHARITVTYNDIDGNEYKKRFSGYPAIVLQHEIDHLNGIMFYDHISEE 190


>gi|195444659|ref|XP_002069969.1| GK11285 [Drosophila willistoni]
 gi|194166054|gb|EDW80955.1| GK11285 [Drosophila willistoni]
          Length = 173

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 17/156 (10%)

Query: 10  PDPILRRVSRPI--EKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LRR +  +  +K+N  +I   ID M+ V+   D +G+AA QIGV  R++V++  + 
Sbjct: 13  GDPVLRRRAEEVSGDKVNSPEIKETIDCMVHVLRHYDCVGVAAPQIGVPLRIIVMEFHEG 72

Query: 67  AHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              + P               VFINP++   +D    + EGC+S+  Y A V+R   + V
Sbjct: 73  KKNQFPAEIYAERKMSTLSLAVFINPELEILNDKQHKHPEGCMSVRGYSAQVERHDRVRV 132

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           + +        +  +G  A   QHE+DHLNGI++I+
Sbjct: 133 KGIGMMGTPSELELEGWSARIAQHEMDHLNGIIYIE 168


>gi|60117243|gb|AAX14403.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila
           mojavensis]
          Length = 134

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 8/133 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  VDVQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIY 125
           +Y D + + Q + 
Sbjct: 121 KYKDLDNEEQTLK 133


>gi|310819401|ref|YP_003951759.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|309392473|gb|ADO69932.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 200

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL--- 55
           +   +V   +P+LR+ +R +      + ++  LI  M + M    G+GLAA Q+GV    
Sbjct: 1   MVLKIVQAGEPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRL 60

Query: 56  --------YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
                   Y + +      A  + P+   V INP ++        + EGCLS+  + A V
Sbjct: 61  VVVEDRAEYHVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALV 120

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R+  + V  +D +     + A G  A  LQHE DHL G L++D +  
Sbjct: 121 PRARGVRVEALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRMEP 168


>gi|229157552|ref|ZP_04285629.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           4342]
 gi|228626002|gb|EEK82752.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC
           4342]
          Length = 181

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 16/166 (9%)

Query: 4   KPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAV 50
           K ++   DPILR V+  +     E+  + +  +I+         M E      GIGLAA 
Sbjct: 2   KDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAP 61

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRS 107
           QIG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V R 
Sbjct: 62  QIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVPRY 121

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 122 TRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|115378396|ref|ZP_01465558.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|115364586|gb|EAU63659.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 188

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL--- 55
           +   +V   +P+LR+ +R +      + ++  LI  M + M    G+GLAA Q+GV    
Sbjct: 1   MVLKIVQAGEPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRL 60

Query: 56  --------YRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
                   Y + +      A  + P+   V INP ++        + EGCLS+  + A V
Sbjct: 61  VVVEDRAEYHVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALV 120

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R+  + V  +D +     + A G  A  LQHE DHL G L++D +  
Sbjct: 121 PRARGVRVEALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRMEP 168


>gi|126641011|ref|YP_001083995.1| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978]
          Length = 122

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 5/122 (4%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKNPMVFINPKIITFSDDFSV 89
           M   M   +G+G+AA Q+ +  R++++  + +     A   N +V +NP+I+ FS +  +
Sbjct: 1   MHATMLERNGVGIAAPQVYISKRIIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCL 60

Query: 90  YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
            +EGCLS+PD R  V+R+  + V+Y+    +       G  A  +QHE+DHLNGILF++ 
Sbjct: 61  GEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVER 120

Query: 150 LS 151
           +S
Sbjct: 121 IS 122


>gi|195157968|ref|XP_002019866.1| GL12633 [Drosophila persimilis]
 gi|194116457|gb|EDW38500.1| GL12633 [Drosophila persimilis]
          Length = 238

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  +        +I  +++ M++V+   + +G+AA QIGV  R++ ++ +  
Sbjct: 55  GDPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFKKS 114

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             ++ P               V INP +   +     + EGC+S+  + A+V+R   + +
Sbjct: 115 LQKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGVKL 174

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D +++   +   G  A   QHE+DHL+G L+ D + R
Sbjct: 175 SGLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214


>gi|126649799|ref|ZP_01722035.1| peptide deformylase [Bacillus sp. B14905]
 gi|126593518|gb|EAZ87463.1| peptide deformylase [Bacillus sp. B14905]
          Length = 185

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++    P LR  +  ++  ++ +   L ++ML+ + ++             GIGLAA Q
Sbjct: 6   DIIREGHPTLRTKAEEVKFPLSDETRQLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108
           +  L R+  + LQD A  +   V INPKI++ S +  +    EGCLS+  +    V R A
Sbjct: 66  VNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNVPGYVPRHA 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ITV++   + + + +   GL A   QHELDHLNGI+F D ++ 
Sbjct: 126 RITVKFKTIDGEEKKMRLKGLSAIAFQHELDHLNGIMFYDRINE 169


>gi|125778498|ref|XP_001360007.1| GA16144 [Drosophila pseudoobscura pseudoobscura]
 gi|54639757|gb|EAL29159.1| GA16144 [Drosophila pseudoobscura pseudoobscura]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR+ +  +        +I  +++ M++V+   + +G+AA QIGV  R++ ++ +  
Sbjct: 55  GDPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFKKS 114

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             ++ P               V INP +   +     + EGC+S+  + A+V+R   + +
Sbjct: 115 LQKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGVKL 174

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +D +++   +   G  A   QHE+DHL+G L+ D + R
Sbjct: 175 SGLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214


>gi|170744220|ref|YP_001772875.1| peptide deformylase [Methylobacterium sp. 4-46]
 gi|168198494|gb|ACA20441.1| formylmethionine deformylase [Methylobacterium sp. 4-46]
          Length = 165

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 3/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   PL+ +PD  LRR   P    +  +     ++ E + +   IGL    +G   RL V
Sbjct: 1   MAILPLLRYPDACLRRAVPPAALPDPRVAAFAADLAETLDAHRAIGLTGPHVGASIRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I L   A     M  +NP+++  S + + ++EG +++P    +V+R A + VRY D +  
Sbjct: 61  IRLGPGAP---LMTCVNPQVVHASPETARHREGSVAMPGVDEEVERPARVRVRYQDLDGT 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
            + + A+G LA CLQHE+D L+G+ + +
Sbjct: 118 AREVEAEGFLAACLQHEIDQLDGVFWTE 145


>gi|256831860|ref|YP_003160587.1| Peptide deformylase [Jonesia denitrificans DSM 20603]
 gi|256685391|gb|ACV08284.1| Peptide deformylase [Jonesia denitrificans DSM 20603]
          Length = 245

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 72/156 (46%), Gaps = 9/156 (5%)

Query: 3   KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             PLV    P+LRR +   E ++ +D M  ID M   M    G+GLAA Q+GV   + V+
Sbjct: 49  VLPLVHAGHPVLRREAGRYEGQLGADFMAFIDAMNTTMVVAPGVGLAAPQVGVSLAVAVM 108

Query: 62  DLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                A   +P         V +NP      D+   + EGCLS+P Y+A V R   + V 
Sbjct: 109 RDPGAADDADPRERVAFPMRVLVNPVYEPVGDEKVSFFEGCLSVPGYQAVVARWRRVRVM 168

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
             D           G  A   QHE+DHL G+L++D 
Sbjct: 169 GWDETGAPVDEVLTGWPARIAQHEIDHLRGVLYVDR 204


>gi|311067971|ref|YP_003972894.1| peptide deformylase [Bacillus atrophaeus 1942]
 gi|310868488|gb|ADP31963.1| peptide deformylase [Bacillus atrophaeus 1942]
          Length = 184

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             + +V    P LR V+  ++   +      +  M+E + ++             G+GLA
Sbjct: 3   TMENIVRDGHPALREVAENVQLPASDTEKKQLAEMIEFVKNSQDPVLAEQHQLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105
           A QI +  R++ I  +D +         NPKII+ S +  +    EGCLS+ +     V 
Sbjct: 63  APQININKRMIAIHAEDASGTLYSYALFNPKIISHSVEKSYLTSGEGCLSVDEAIPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R A I V+      +   I   G LA   QHE+DHLNG++F DH+ + 
Sbjct: 123 RYARIRVKATTLEGEEIDIRLKGFLAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|169826942|ref|YP_001697100.1| peptide deformylase 2 [Lysinibacillus sphaericus C3-41]
 gi|168991430|gb|ACA38970.1| Peptide deformylase 2 [Lysinibacillus sphaericus C3-41]
          Length = 185

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++    P LR  +  ++  ++ +   L ++ML+ + ++             GIGLAA Q
Sbjct: 6   DIIREGHPTLRTKAEEVKFPLSDETRQLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108
           +  L R+  + LQD A  +   V INPKI++ S +  +    EGCLS+  +    V R A
Sbjct: 66  VNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNVPGYVPRHA 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ITV++   + + + +   GL A   QHELDHLNG++F D ++ 
Sbjct: 126 RITVKFKTIDGEEKKMRLKGLPAIAFQHELDHLNGVMFYDRINE 169


>gi|325188477|emb|CCA23012.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 179

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 4/154 (2%)

Query: 2   VKKP--LVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
            KKP  L+   +  LRR+  P+  +   ++  L + M + +   DG+G+AA Q+G   RL
Sbjct: 4   AKKPFELIFLGNSALRRICEPVFDVKCPEMKRLAEAMRKQLIEQDGVGIAAPQLGANCRL 63

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            ++ +++        VF NPK+  FS +     EGCLS+P Y   VKRS  I V+Y    
Sbjct: 64  FLMSMEESNVSALEAVF-NPKVTFFSKEMEKDFEGCLSVPHYSGIVKRSREIQVQYSTAL 122

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +    +G  A   QHELDHLNG+LF+D +  
Sbjct: 123 GMKEKRTLEGFPARVFQHELDHLNGVLFLDKVEP 156


>gi|229817289|ref|ZP_04447571.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM
           20098]
 gi|229785078|gb|EEP21192.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM
           20098]
          Length = 217

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 68/159 (42%), Gaps = 10/159 (6%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+ +       S   +  LID M   M    G+GLAA QIG+   L V
Sbjct: 28  ILPIVQAGEPVLRQQTVAYTGQLSKHTLAKLIDAMRTTMLEAPGVGLAATQIGLGLALAV 87

Query: 61  IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           ++        +P         V INP       +   + EGCLS   Y+A  KR   I  
Sbjct: 88  LEDHIRDDEDDPREIGELPFHVIINPVYAPVGTETRSFYEGCLSFDGYQAVRKRWLDIDA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + D N  H      G  A   QHE DHL+G L+ID   
Sbjct: 148 EWDDENGMHHKERMHGWPARIFQHETDHLSGELYIDKAE 186


>gi|229086539|ref|ZP_04218711.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-44]
 gi|228696856|gb|EEL49669.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           Rock3-44]
          Length = 184

 Score =  141 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +    S+     +  +I+         M+E      GIG+AA Q
Sbjct: 6   DVIREGNPILRAVAEEVPLPASEADLRTLKEMIEFVINSQNPEMVEKYNLRPGIGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108
           IG+  R++ + + D           NPKII+ S +  +    EGCLS+  +    V R  
Sbjct: 66  IGISKRMIAVHVTDANETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGYVPRYT 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ITV+    + +   +   GL A   QHE+DHLNG++F DH++
Sbjct: 126 RITVKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 168


>gi|296130447|ref|YP_003637697.1| Peptide deformylase [Cellulomonas flavigena DSM 20109]
 gi|296022262|gb|ADG75498.1| Peptide deformylase [Cellulomonas flavigena DSM 20109]
          Length = 230

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 12/160 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
              P+V    P+LR ++RP +    ++++  L+  +   M +  G+GLAA QIG+   L 
Sbjct: 26  AVAPIVQAGHPVLRAMARPYDGQVDDAELTELLALLHRTMRAAPGVGLAAPQIGLPLALA 85

Query: 60  VIDLQDHAH------RKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           V++            R+ P+    V +NP      D+   + EGCLS+  Y+A V R   
Sbjct: 86  VVEDPGTGDGEAARVRERPVLPYRVLVNPTYAPAGDELVAFYEGCLSVEGYQAVVPRQRA 145

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           + +  +D           G  A  +QHE DHL+G L++D 
Sbjct: 146 VHLTGLDETGATLDEVVTGWPARIVQHETDHLHGTLYLDR 185


>gi|323454882|gb|EGB10751.1| hypothetical protein AURANDRAFT_22058 [Aureococcus anophagefferens]
          Length = 175

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
             + L     P LR  ++P+ +       +  ++ ++++ M   +G G+A  QIG  +R+
Sbjct: 20  AVRALPPLGTPCLREQAKPVPEAMFGTPALDAIVADLVDTMRDANGAGIAGPQIGEGWRI 79

Query: 59  VVIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            V++         +  +    VF+NP++    +      EGCLSIP  R  V R++ +  
Sbjct: 80  FVVEGSGANPRYPYKPKLPLTVFVNPELEVVDEAPMEIFEGCLSIPGVRGRVARASKVRC 139

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
                +     + A G  A  LQHE DHL+GILF D
Sbjct: 140 AARRPDGSSFSVLAAGHAAGTLQHEQDHLDGILFPD 175


>gi|168184095|ref|ZP_02618759.1| putative peptide deformylase [Clostridium botulinum Bf]
 gi|237794165|ref|YP_002861717.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657]
 gi|182672791|gb|EDT84752.1| putative peptide deformylase [Clostridium botulinum Bf]
 gi|229261785|gb|ACQ52818.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657]
          Length = 166

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54
           M  KP+++  D IL R+S  I+K N      +I+++ + + S       G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  +      FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKTYY-----FINPILEFIGDDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLNWEDCEMYLEGGLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|83941565|ref|ZP_00954027.1| peptide deformylase [Sulfitobacter sp. EE-36]
 gi|83847385|gb|EAP85260.1| peptide deformylase [Sulfitobacter sp. EE-36]
          Length = 131

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 2/130 (1%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M++ M +  G+GLAA QIGV  ++ V+D      ++  +   NP +I  S   + Y+E  
Sbjct: 1   MIDTMDAMPGVGLAAPQIGVSLQVAVVDASQARDKR--IRLANPVVIDASAIMNEYEEAS 58

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++P   A ++R   + V+Y+D           GL AT +QH++DHL G +F+D+LS+ +
Sbjct: 59  PNLPGISAKIRRPRGVKVQYLDEQGARVTRDFVGLEATSVQHQIDHLAGKMFVDNLSKTR 118

Query: 155 RDMITKKMSK 164
           RDM+ +K  K
Sbjct: 119 RDMLLRKARK 128


>gi|170761484|ref|YP_001786248.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408473|gb|ACA56884.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 166

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54
           M  KP+++  D IL R S  I+K N      +I+++ + + S       G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  H      FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKTHY-----FINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|229162908|ref|ZP_04290865.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           R309803]
 gi|228620790|gb|EEK77659.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           R309803]
          Length = 181

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +     E+  + +  +I+         M E      GIGLAA Q
Sbjct: 3   DVIREGNPILRNVAEEVSIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQ 62

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108
           IG+  +++ + + D           NPKII+ S +  +    EGCLS+  D    V R  
Sbjct: 63  IGISKKMIAVHVTDTNGTLYSHALFNPKIISHSVERTYLPNGEGCLSVDRDVPGYVPRYT 122

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            ITV+    N +   +   GL A   QHE+DHLNG++F DH+++ 
Sbjct: 123 RITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167


>gi|171742883|ref|ZP_02918690.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC
           27678]
 gi|171278497|gb|EDT46158.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC
           27678]
          Length = 134

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 6/140 (4%)

Query: 28  IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87
           + +L+ ++L+ +      GL+A QIGV  R    ++            +NP +   S + 
Sbjct: 1   MRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNIDGKIGY-----VLNPVLEETSGE- 54

Query: 88  SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
               EGCLS+P      +R+ +  VR +D +    ++   G++   LQHE DHL+G +++
Sbjct: 55  QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHGIMGRMLQHETDHLDGHVYL 114

Query: 148 DHLSRLKRDMITKKMSKLVQ 167
           D L + +R    + M    Q
Sbjct: 115 DRLEKEERREAMRYMRNHRQ 134


>gi|118780782|ref|XP_310421.3| AGAP003861-PA [Anopheles gambiae str. PEST]
 gi|116131029|gb|EAA06035.3| AGAP003861-PA [Anopheles gambiae str. PEST]
          Length = 241

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+LR  +  I +    ++++  L  ++ +VM +   +GLAA Q+G+  R  V++
Sbjct: 53  IVQLGDPVLRVPANAIPEKELQSAEVQYLARHLTKVMRAYRCVGLAAPQLGLSLRAFVME 112

Query: 63  LQDH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            +D                      + +NP++   + +  ++ E C S+  YRADV R  
Sbjct: 113 FKDELRDQYTKADYKLREMEPLPLTILLNPELKVLNYEKVIHTEACESVRGYRADVPRYR 172

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I ++  D     Q +   G  A   QHE+DHLNGI++ D ++R
Sbjct: 173 EILLQGFDATGNRQELRLSGWNARIAQHEMDHLNGIVYTDIMNR 216


>gi|153938041|ref|YP_001390224.1| putative peptide deformylase [Clostridium botulinum F str.
           Langeland]
 gi|152933937|gb|ABS39435.1| putative peptide deformylase [Clostridium botulinum F str.
           Langeland]
 gi|295318318|gb|ADF98695.1| putative peptide deformylase [Clostridium botulinum F str. 230613]
          Length = 166

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54
           M  KP+++  D IL R+S+ I+K N      +I+++ + + S       G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISKKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  H      FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKTHY-----FINPILEFIGEDTFYIWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRARDLKSFRINK 161


>gi|299534600|ref|ZP_07047932.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1]
 gi|298729973|gb|EFI70516.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1]
          Length = 185

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++    P LR  +  ++  +  +   L ++ML+ + ++             GIGLAA Q
Sbjct: 6   DIIREGHPTLRTKAEEVKFPLTEETKKLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108
           +  L R+  + L+D A  +   V INPKI++ S +  +    EGCLS+  +    V R A
Sbjct: 66  VNSLQRMFALHLKDEAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNIPGYVPRHA 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ITV++   + + + +   GL A   QHELDHLNGI+F D ++ 
Sbjct: 126 RITVKFKTIDGEEKKMRLKGLPAIAFQHELDHLNGIMFYDRINE 169


>gi|149201579|ref|ZP_01878553.1| peptide deformylase [Roseovarius sp. TM1035]
 gi|149144627|gb|EDM32656.1| peptide deformylase [Roseovarius sp. TM1035]
          Length = 149

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 2/149 (1%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
            + P+ +I      L + M+ VM +  G+GLAA Q+G +  L V+D      R   +   
Sbjct: 2   PAAPLPEITDQTRALWNEMIAVMEAMPGVGLAATQLGEMQALAVVDAS--TARGQAVRMA 59

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP+I+  S     ++E    +P   A ++R   +TVR+++ +A+ +     GL AT +QH
Sbjct: 60  NPEILHASVQLRPHEEASPCLPGVSAMIERPRAVTVRFLNADAEVEERDFVGLWATSVQH 119

Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           ++DHL G ++ D L R+KRDM+ ++  K+
Sbjct: 120 QIDHLQGRMYFDRLGRVKRDMLLRRARKI 148


>gi|270284117|ref|ZP_05965571.2| peptide deformylase [Bifidobacterium gallicum DSM 20093]
 gi|270277126|gb|EFA22980.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
          Length = 221

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 5   PLVIFPDPILRRVSRP-IEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           P+V   DP+LR  + P + ++++  +  LI+ M   M    G+G+AA QIG+     V+ 
Sbjct: 33  PMVEVGDPVLRAQAEPYVGQLSAKTLAKLIEAMRVTMLDAPGVGVAAPQIGLSLAFAVVE 92

Query: 62  -------DLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                  D       + P  V INP      D  + + EGCLS P ++A  +R   I   
Sbjct: 93  DHTSEEYDDDPREFAEFPFHVIINPSYDPVGDKTAKFFEGCLSFPGFQAVRERYVDIMAH 152

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + D           G  A   QHE DHL+G ++ID   
Sbjct: 153 WTDEQGVRHDEPLHGWPARIFQHETDHLSGEIYIDKAE 190


>gi|229019177|ref|ZP_04176010.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1273]
 gi|229025422|ref|ZP_04181837.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1272]
 gi|228735877|gb|EEL86457.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1272]
 gi|228742117|gb|EEL92284.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH1273]
          Length = 184

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +     E+  + +  +I+         M E      GIGLAA Q
Sbjct: 6   EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSA 108
           IG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V R  
Sbjct: 66  IGISKKMIAVHVTDTNGTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ITV+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 126 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|148378868|ref|YP_001253409.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           3502]
 gi|153931530|ref|YP_001383251.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           19397]
 gi|153936227|ref|YP_001386800.1| putative peptide deformylase [Clostridium botulinum A str. Hall]
 gi|148288352|emb|CAL82429.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502]
 gi|152927574|gb|ABS33074.1| putative peptide deformylase [Clostridium botulinum A str. ATCC
           19397]
 gi|152932141|gb|ABS37640.1| putative peptide deformylase [Clostridium botulinum A str. Hall]
          Length = 166

 Score =  140 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54
           M  KP+++  D IL R+S  I+K N      +I+++ + + S       G  +AA QIG 
Sbjct: 1   MSTKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  H      FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKTHY-----FINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + + +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|297243759|ref|ZP_06927689.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
 gi|298252952|ref|ZP_06976746.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
 gi|296888180|gb|EFH26922.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
 gi|297533316|gb|EFH72200.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
          Length = 217

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 67/159 (42%), Gaps = 10/159 (6%)

Query: 3   KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+  V+   +   + +  LI  M   M    G+GLAA QIG+   + V
Sbjct: 28  ILPIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAV 87

Query: 61  IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           I+        +P           INP           + EGCLS+  Y+A  +R   I  
Sbjct: 88  IEDHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDIQA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + D + +       G  A   QHE DHL G L+ID   
Sbjct: 148 TWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDRAE 186


>gi|322805193|emb|CBZ02757.1| peptide deformylase related protein [Clostridium botulinum H04402
           065]
          Length = 166

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54
           M  KP+++  D IL R+S  I+K N      +I+++ + + S       G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  H      FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKTHY-----FINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + + +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|90961626|ref|YP_535542.1| peptide deformylase [Lactobacillus salivarius UCC118]
 gi|227890713|ref|ZP_04008518.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
 gi|301299265|ref|ZP_07205551.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|122993074|sp|Q1WU76|DEF_LACS1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|90820820|gb|ABD99459.1| Peptide deformylase [Lactobacillus salivarius UCC118]
 gi|227867651|gb|EEJ75072.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
 gi|300214436|gb|ADJ78852.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus
           salivarius CECT 5713]
 gi|300853109|gb|EFK80707.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 186

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 19/168 (11%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQI 52
           ++   +P LR  ++ IE  ++ +   L  +M+E + ++             G+GLAA Q+
Sbjct: 7   IIRDGNPTLRARAKAIEFPLSEEDKKLAHDMMEFLENSQNPEIAKKYHLRAGVGLAAPQV 66

Query: 53  GVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106
            V  R+  + +        P+   V INP I++ S   +     EGCLS+  D    V R
Sbjct: 67  DVSKRMTAVLVPGIEDDDEPIFKHVLINPTILSESVQLAALGEGEGCLSVDRDIPGYVPR 126

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I +R+ D +    +       A  +QHE+DHLNGILF DH+++ +
Sbjct: 127 HDRIKLRWYDLDGNKHVERLRDYPAIVVQHEIDHLNGILFYDHINKEQ 174


>gi|291240947|ref|XP_002740376.1| PREDICTED: peptide deformylase-like [Saccoglossus kowalevskii]
          Length = 270

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 17/162 (10%)

Query: 8   IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
              DP+LR  + P++  +   + I  LI+ M+ VM     +GL+A QIGV  +++V++  
Sbjct: 95  QVGDPVLRGKAVPVDPSDIGSNSINQLIEQMVAVMRRGQTVGLSAPQIGVGCQVIVMEYK 154

Query: 63  -----------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
                      +Q    ++ P+ +FINP++    D      EGC SI  Y A V+R   +
Sbjct: 155 KKHMQMYSPAIIQQRGIKEFPLKIFINPQMKVLDDTKVTQLEGCESIKGYSAYVERYHAV 214

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +  +    + Q   ADG  A  +QHE+DHL G L+ID +  
Sbjct: 215 EITGLSPTGEMQSWKADGFPARIIQHEMDHLQGRLYIDIMDP 256


>gi|283783592|ref|YP_003374346.1| peptide deformylase [Gardnerella vaginalis 409-05]
 gi|283442075|gb|ADB14541.1| peptide deformylase [Gardnerella vaginalis 409-05]
          Length = 217

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 10/159 (6%)

Query: 3   KKPLVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V   +P+LR+  V+   +   + +  LI  M   M    G+GLAA QIG+   + V
Sbjct: 28  ILPIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAV 87

Query: 61  IDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           I+        +P           INP           + EGCLS+  Y+A  +R   +  
Sbjct: 88  IEDHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDVQA 147

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + D + +       G  A   QHE DHL G L+ID   
Sbjct: 148 TWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDRAE 186


>gi|303281244|ref|XP_003059914.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458569|gb|EEH55866.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 185

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 5   PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
            +V    P LR ++  +       +    LI  ML +     G+GLAA QIGV YR+ V+
Sbjct: 1   EIVQAGTPCLREIAEEVPLSSIDTAKTQELIQEMLSICR-GRGVGLAAPQIGVPYRIFVL 59

Query: 62  -------------DLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
                        DL+    +     V INP +   S+  + + EGCLS+  YR  V+R 
Sbjct: 60  EDTEEGMSDVSKKDLEAMDRKPFAAKVVINPVVTPVSNLSAAFFEGCLSVQGYRGLVRRY 119

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             + V     +       A G  A  +QHE+DHLNG+L++D +       + K
Sbjct: 120 LEVRVTGYGGDGSPVDFVARGWQARIVQHEMDHLNGVLYVDRMDTRTFRRVDK 172


>gi|256846996|ref|ZP_05552442.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715660|gb|EEU30635.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 186

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 19/169 (11%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+ +  +   +  D       ++E +  +             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRQRAAKVSFPLTDDEREFAHQLMEYLEVSQDPELCKKYGLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADV 104
           Q+GV  ++  + +        P    V INP II+ S  +      EGCLS+  D    V
Sbjct: 65  QVGVSKQMASVLVPADEEGGKPQFKDVIINPVIISESVQYGVLTEGEGCLSVDKDIPGYV 124

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            R   IT++Y D + +   I      A   QHE+DHL+G+LF DH+++ 
Sbjct: 125 PRHDRITLKYQDVDGETHQIRLKHYPAIVCQHEIDHLHGVLFYDHINKE 173


>gi|226199013|ref|ZP_03794576.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
 gi|225929113|gb|EEH25137.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
          Length = 131

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + ++   DP L  V+RP+E  N  ++  L+ +M E M+  +G GLAA QIGV  ++++
Sbjct: 1   MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60

Query: 61  IDLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                      A      V +NP I     D     EGCLS+P  R  V R   +     
Sbjct: 61  FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120

Query: 116 DCNAQHQII 124
           D        
Sbjct: 121 DQYGAKLER 129


>gi|228992712|ref|ZP_04152638.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           pseudomycoides DSM 12442]
 gi|228998756|ref|ZP_04158342.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock3-17]
 gi|229006272|ref|ZP_04163956.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock1-4]
 gi|228754918|gb|EEM04279.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock1-4]
 gi|228760931|gb|EEM09891.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           Rock3-17]
 gi|228767044|gb|EEM15681.1| Peptide deformylase (Polypeptide deformylase) [Bacillus
           pseudomycoides DSM 12442]
          Length = 184

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +    S+     +  +I+         M+E      GIG+AA Q
Sbjct: 6   DVIREGNPILRAVAEEVPLPASEEDIRTLKEMIELVINSQHPEMVEKYNLRPGIGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108
           IG+  R++ + + D           NPKII+ S +  +    EGCLS+  +    V R  
Sbjct: 66  IGISKRMIAVHVTDTNETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGYVPRYT 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ITV+    + +   +   GL A   QHE+DHLNG++F DH++
Sbjct: 126 RITVKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 168


>gi|52345870|ref|NP_001004979.1| peptide deformylase (mitochondrial) [Xenopus (Silurana) tropicalis]
 gi|49522476|gb|AAH75522.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis]
 gi|89268627|emb|CAJ82379.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis]
          Length = 239

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIE--KIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR  +  +   +I+  D   +++ M+ V+ +   +GL+A QIGV  R++ +     
Sbjct: 67  GDPVLRCTAARVPCAQISHPDTQAVVNQMVRVLRAGCCVGLSAPQIGVPLRILAVAFPQQ 126

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
            ++  P               +FINP++         + EGC S+  + A V R   + +
Sbjct: 127 MYQAVPPEVRNAREMSPFPLQIFINPEMRIVDSRTLSFPEGCSSVQGFSAVVPRYYAVEL 186

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + M+   +H    A G  A  +QHE+DHL+G+L+ID +  
Sbjct: 187 QGMNPKGEHVTWQAQGWAARIIQHEMDHLDGVLYIDKMDP 226


>gi|168178266|ref|ZP_02612930.1| putative peptide deformylase [Clostridium botulinum NCTC 2916]
 gi|182670881|gb|EDT82855.1| putative peptide deformylase [Clostridium botulinum NCTC 2916]
          Length = 166

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54
           M  KP+++  D IL R+S  I+K N      +I+++ + + S       G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEKIQKSNLDKAEQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  H      FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKTHY-----FINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|253577418|ref|ZP_04854734.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843218|gb|EES71250.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 193

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +V   DPILR V+ P+      +    +  ML+ + ++             G+GL+A Q
Sbjct: 14  DIVREGDPILRVVTEPVSIPPTEEDREEMAAMLQFLKNSQDPEMSKKYKLRAGVGLSANQ 73

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQE--GCLSIPD-YRADVKRSA 108
           IG+  R+    L D   +  P+   NPKII+ S   +   E  GCLS+    +  V R  
Sbjct: 74  IGLNKRMFAALLMDENGKDRPLALYNPKIISHSQAMTYLPESEGCLSVDRTVQGFVPRYE 133

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            + V+  D       +   G  A  +QHE+DHLNGI+F DH++  
Sbjct: 134 KVQVKAYDDEGNEIKLRFKGFDAIVMQHEIDHLNGIMFYDHINPE 178


>gi|212639721|ref|YP_002316241.1| peptide deformylase [Anoxybacillus flavithermus WK1]
 gi|212561201|gb|ACJ34256.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1]
          Length = 184

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48
             K ++    P LR+V+  +    + +   ++ ++LE                  GIGLA
Sbjct: 3   TMKDIIKDGHPTLRKVAEEVPLPPSEEDRRILASLLEYVKMSQDPELAKTYGLRPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPD-YRADVK 105
           A QI V  R++ + + D     +     NPKI++ S +       EGCLS+       V 
Sbjct: 63  APQINVSKRMIAVHVTDEKGTLHSYALFNPKIVSHSVEMCYLTSGEGCLSVDKAIPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R   ITV       +   +   GL A   QHE+DHLNGI+F DH+++
Sbjct: 123 RYMRITVTGTTLEDETVKLRLKGLPAIVFQHEIDHLNGIMFYDHINK 169


>gi|16803091|ref|NP_464576.1| peptide deformylase [Listeria monocytogenes EGD-e]
 gi|47096139|ref|ZP_00233739.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854]
 gi|224500304|ref|ZP_03668653.1| peptide deformylase [Listeria monocytogenes Finland 1988]
 gi|224502635|ref|ZP_03670942.1| peptide deformylase [Listeria monocytogenes FSL R2-561]
 gi|254828428|ref|ZP_05233115.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165]
 gi|254830180|ref|ZP_05234835.1| peptide deformylase [Listeria monocytogenes 10403S]
 gi|254898776|ref|ZP_05258700.1| peptide deformylase [Listeria monocytogenes J0161]
 gi|254911735|ref|ZP_05261747.1| peptide deformylase [Listeria monocytogenes J2818]
 gi|254936061|ref|ZP_05267758.1| polypeptide deformylase [Listeria monocytogenes F6900]
 gi|284801383|ref|YP_003413248.1| peptide deformylase [Listeria monocytogenes 08-5578]
 gi|284994525|ref|YP_003416293.1| peptide deformylase [Listeria monocytogenes 08-5923]
 gi|23396542|sp|Q8Y866|DEF_LISMO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|16410453|emb|CAC99129.1| lmo1051 [Listeria monocytogenes EGD-e]
 gi|47015488|gb|EAL06421.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854]
 gi|258600823|gb|EEW14148.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165]
 gi|258608650|gb|EEW21258.1| polypeptide deformylase [Listeria monocytogenes F6900]
 gi|284056945|gb|ADB67886.1| peptide deformylase [Listeria monocytogenes 08-5578]
 gi|284059992|gb|ADB70931.1| peptide deformylase [Listeria monocytogenes 08-5923]
 gi|293589685|gb|EFF98019.1| peptide deformylase [Listeria monocytogenes J2818]
          Length = 183

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L  +MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     EGCLS+  +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +   G  A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 170


>gi|308173421|ref|YP_003920126.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7]
 gi|307606285|emb|CBI42656.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7]
 gi|328553649|gb|AEB24141.1| peptide deformylase [Bacillus amyloliquefaciens TA208]
 gi|328911506|gb|AEB63102.1| formylmethionine deformylase A [Bacillus amyloliquefaciens LL3]
          Length = 184

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             + +V    P LR ++  ++   + +    + +M+E + ++             G+GLA
Sbjct: 3   TMENIVRDGHPALREIAEEVQLPASDEEKQQLADMIEFVKNSQNPELAEKYELRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105
           A Q  V  R++ +  +D           NPKI++ S +  +    EGCLS+ +     V 
Sbjct: 63  APQTAVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPIPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R A I V+      +   I   G  A   QHE+DHLNG++F DH+ + 
Sbjct: 123 RYARIRVKATTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|319650481|ref|ZP_08004621.1| Def2 protein [Bacillus sp. 2_A_57_CT2]
 gi|317397662|gb|EFV78360.1| Def2 protein [Bacillus sp. 2_A_57_CT2]
          Length = 192

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 16/173 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K +V   DPILR V++ +   +  +    +  M++ + ++             GIGL+
Sbjct: 11  TMKDIVREGDPILREVTKEVTVPLTEEDRGTLIAMMQYLKNSQDPAIAKKYGLRPGIGLS 70

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A QIG+  R+      +          INPKII+ S    F    EGCLS+  D +  V 
Sbjct: 71  ANQIGLNKRMFTAYFTNEKAEPQEYFVINPKIISHSVGVIFLPEGEGCLSVDRDVKGYVP 130

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           R   I V+  +   +   +   G+ A  +QHE+DHLNGI+F D ++      +
Sbjct: 131 RYERIKVKAHNLEGEEVTLRFKGIPAIIMQHEIDHLNGIMFYDRINSNDPFRV 183


>gi|327441213|dbj|BAK17578.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris
           StLB046]
          Length = 185

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 16/163 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           ++    P LR  +  +   ++++   L D+ML+ + ++             GIGLAA Q+
Sbjct: 7   IIREGHPTLRTRAEEVTFPLSAEDRKLADDMLQYLINSQNPEIAEKYNLRGGIGLAANQV 66

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVKRSAF 109
             L R+  + L+D        V +NPKI++ S +  +    EGCLS+       V R A 
Sbjct: 67  NSLKRMFALHLEDENGELISFVAVNPKIVSHSVEQTYITSGEGCLSVDRAIPGYVYRYAR 126

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           ITV++M  + + + +   GL A   QHELDHLNG++F D +  
Sbjct: 127 ITVKFMTVDGEEKKMRLSGLPAIAFQHELDHLNGVMFYDRIDE 169


>gi|229134783|ref|ZP_04263591.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST196]
 gi|228648636|gb|EEL04663.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           BDRD-ST196]
          Length = 181

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +     E+  + +  +I+         M E      GIGLAA Q
Sbjct: 3   EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 62

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSA 108
           IG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V R  
Sbjct: 63  IGISKKMIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 122

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ITV+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 123 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166


>gi|224476324|ref|YP_002633930.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420931|emb|CAL27745.1| putative polypeptide deformylase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 162

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV      LR+ +  ++K +  +  L+ ++ + +Y T+   L+A QIGV  +  +
Sbjct: 1   MAVKQLVPANSSKLRKPAAEVKKFDDSLKKLLLDIEDTLYDTEASALSAPQIGVSLQAAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  INP II  SD+     EG +S PD    V RS  I V+  D +  
Sbjct: 61  IDM----EAEGLLQLINPTIIRQSDETVTDLEGSISFPDVFGTVTRSQMIVVQSYDLHGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + A   +A  + H +D L GI F + +   ++ +  +++   ++
Sbjct: 117 KVELTAYDDVARMILHIVDQLKGIPFTEKM---EKQLTEEELEAYLE 160


>gi|163941714|ref|YP_001646598.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|229013180|ref|ZP_04170324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           DSM 2048]
 gi|229061641|ref|ZP_04198980.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH603]
 gi|229168715|ref|ZP_04296436.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH621]
 gi|163863911|gb|ABY44970.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
 gi|228614727|gb|EEK71831.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH621]
 gi|228717648|gb|EEL69304.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus
           AH603]
 gi|228748130|gb|EEL97991.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides
           DSM 2048]
          Length = 184

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51
            ++   +PILR V+  +     E+  + +  +I+         M E      GIGLAA Q
Sbjct: 6   EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSA 108
           IG+  +++ + + D           NPKII+ S + +  Q  EGCLS+  +    V R  
Sbjct: 66  IGISKKMIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ITV+    N +   +   GL A   QHE+DHLNG++F DH+++
Sbjct: 126 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169


>gi|81428697|ref|YP_395697.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K]
 gi|123728642|sp|Q38WP3|DEF_LACSS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78610339|emb|CAI55388.1| Formylmethionine deformylase (N-formylmethionylaminoacyl-tRNA
           deformylase) [Lactobacillus sakei subsp. sakei 23K]
          Length = 185

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K ++   +P LR +++P+   ++ +   L  +M+  + ++             G+GLAA 
Sbjct: 5   KDIIREGNPTLREIAQPVSFPLSDEDRQLAADMMTFLENSQDPEIAAKYQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKN--PMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVK 105
           Q+ V  ++  + +            V INPKII+ S  D      EGCLS+  +    V 
Sbjct: 65  QVDVSKQMSAVLVPGPEGEAPILKDVIINPKIISHSVQDAALAEGEGCLSVDREVPGYVP 124

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   IT+RY D       I      A   QHE+DHLNGILF DH+++ 
Sbjct: 125 RHDRITLRYQDVEGVSHKIRLKNYPAIVCQHEIDHLNGILFFDHINKE 172


>gi|226948142|ref|YP_002803233.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto]
 gi|226841538|gb|ACO84204.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto]
          Length = 166

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54
           M  KP+++  D  L R S  I+K N      +I+++ + + S       G  +AA QIG 
Sbjct: 1   MSAKPILLLGDETLYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  H      FINP +    +D     + C+S P     V+R     V Y
Sbjct: 61  SVRIIHMHLGDKTHY-----FINPILEFIGEDTFPLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + + +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLDWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|156368959|ref|XP_001627958.1| predicted protein [Nematostella vectensis]
 gi|156214922|gb|EDO35895.1| predicted protein [Nematostella vectensis]
          Length = 192

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 24/184 (13%)

Query: 6   LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           +    DP+LR  +  ++     + D   ++D +++VM S DG G+AA QIGV  +++ + 
Sbjct: 11  IRQVGDPVLREPAEAVDVTFVHSPDFKAMVDRLVKVMRSHDGAGIAAPQIGVGLQVIAME 70

Query: 62  -----------------DLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
                            DL+       P+ VFINPK+   +     ++E CLS+  + A 
Sbjct: 71  YTGKHMKKLKDNGFSDKDLKRMGIAIVPLKVFINPKLRVINPKMLAFRESCLSVEGHSAV 130

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V R + + V  +D NA      A G  A  LQHE+DHL G L++D  S L +  +     
Sbjct: 131 VPRMSEVEVTALDQNATPITWRAAGWPARILQHEVDHLKGNLYVD--SMLYKTFMNNNWQ 188

Query: 164 KLVQ 167
           K  +
Sbjct: 189 KYAK 192


>gi|170755594|ref|YP_001780500.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra]
 gi|169120806|gb|ACA44642.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra]
          Length = 166

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54
           M  KP+++  D IL R+S  I+K N      +I+++   + S       G  +AA QIG 
Sbjct: 1   MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHNTIVSFKNRYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L D  H      FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGDKTHY-----FINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + + +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|227509423|ref|ZP_03939472.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191135|gb|EEI71202.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 188

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 24/176 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +V   DP+LR+ ++ ++  +++D   L  +++E +  +             G+GLAA Q
Sbjct: 6   DIVRDGDPVLRQEAKKVKFPLSADDKKLAHDLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQ--DHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRAD 103
           +GV   +  + +   D   +  P+   V INP I++ S         EGCLS+  D    
Sbjct: 66  VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 125

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL---SRLKRD 156
           V RSA IT++Y D +     I      A   QHE+DHL+GILF DH+   +  KRD
Sbjct: 126 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181


>gi|241888581|ref|ZP_04775888.1| peptide deformylase [Gemella haemolysans ATCC 10379]
 gi|241864604|gb|EER68979.1| peptide deformylase [Gemella haemolysans ATCC 10379]
          Length = 184

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 18/182 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++I P   LR  +  ++  I+ +   ++  +LE + ++             GIGLA
Sbjct: 3   TTKDIIIDPHATLRARAEEVKSPISDEDKAILRGLLEYVIASQDDEKAEKLGLKPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFS--DDFSVYQEGCLSIP-DYRAD 103
           A QI V  R++ + + D    ++ +     NPKII+ S    +    EGCLS+  D +  
Sbjct: 63  APQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSATKCYLAGGEGCLSVDKDIKGY 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V R + I V   + N +   +    L A C QHE+DHLNG++F DH+++     +  +  
Sbjct: 123 VPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFYDHINKENPFDVPAEYE 182

Query: 164 KL 165
           KL
Sbjct: 183 KL 184


>gi|116334013|ref|YP_795540.1| peptide deformylase [Lactobacillus brevis ATCC 367]
 gi|122269303|sp|Q03QL3|DEF_LACBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116099360|gb|ABJ64509.1| peptide deformylase [Lactobacillus brevis ATCC 367]
          Length = 186

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 19/168 (11%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+ +  +   ++ +   L  +++E +  +             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRQEAADVTFPLSEEDQQLAKDLMEYLVVSQDPEQCKKYGLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKNP---MVFINPKIITFSD--DFSVYQEGCLSIP-DYRADV 104
           Q+GV  ++  + +             V INP II+ S         EGCLS+  D    V
Sbjct: 65  QVGVSKKMASVLVPPVEEDGKSPFTDVIINPVIISESVQAGALTEGEGCLSVDKDVPGFV 124

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT+RY D N +   +      A   QHE+DHL+G LF DH+++
Sbjct: 125 PRHDRITLRYYDVNGEKHQVRLKNYPAIVCQHEIDHLHGTLFYDHINK 172


>gi|330718596|ref|ZP_08313196.1| peptide deformylase [Leuconostoc fallax KCTC 3537]
          Length = 188

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 20/166 (12%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +V   DP+LR  ++ +E  ++ +I  L  +M++ +  +             G+GLAA Q+
Sbjct: 8   IVRDGDPVLRAQAKKVEFPLSDEIQQLTQDMMDYLVISQDDEQNEKYGLRPGVGLAAPQV 67

Query: 53  GVLYRLVVIDL----QDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           G   ++  I +    +D           NP II+ S         EGCLS+  D    V 
Sbjct: 68  GYSLQMASILVPPLDEDSDEPYWQGTIFNPVIISESVKRGALNVGEGCLSVDEDVPGFVT 127

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R+  ITVRY D   Q Q I      A   QHE+DHL+G L+ DH++
Sbjct: 128 RANRITVRYQDEQGQTQTIKLRDYPAIIFQHEIDHLHGHLYYDHIN 173


>gi|266624674|ref|ZP_06117609.1| peptide deformylase [Clostridium hathewayi DSM 13479]
 gi|288863453|gb|EFC95751.1| peptide deformylase [Clostridium hathewayi DSM 13479]
          Length = 121

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           G+GLAA Q+GVL ++VVID++D     N  V INP I   S       EGCLS+P     
Sbjct: 1   GVGLAAPQVGVLKQIVVIDVED----GNQYVLINPVITETSGS-QTGSEGCLSVPGKSGV 55

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R   + V+  DC      +  +GLLA  + HE DHL+G LF+D + 
Sbjct: 56  VTRPDHVKVKAFDCEMNEFELIGEGLLARAICHECDHLSGDLFVDKVE 103


>gi|329667535|gb|AEB93483.1| peptide deformylase [Lactobacillus johnsonii DPC 6026]
          Length = 181

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +    +P+LR+V++P+   ++ +   L D+M++ + ++             G+GLAA Q
Sbjct: 3   DITRDGNPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 62

Query: 52  IGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107
           +G   ++  + +  D        VF+NPKI++ S   +     EGCLS+  D    V R 
Sbjct: 63  VGESVQMAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRP 122

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + +RY   + + + I      A    HE+DHLNG LF D +++
Sbjct: 123 DKLKIRYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 167


>gi|187777978|ref|ZP_02994451.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC
           15579]
 gi|187774906|gb|EDU38708.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC
           15579]
          Length = 166

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 11/166 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTD-----GIGLAAVQIGV 54
           M  K +++  D IL R+S  I+K N      +I+++ + + S       G  +AA QIG 
Sbjct: 1   MPTKSILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L    H      FINP +    DD     + C+S P     V+R     V Y
Sbjct: 61  SVRIIYMHLGYKTHY-----FINPVLEFIGDDTFQLWDDCMSFPGLEVYVERYKKCKVTY 115

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + N +   +Y +G L+   QHE DHL+GIL +     LK   I K
Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161


>gi|317495963|ref|ZP_07954325.1| polypeptide deformylase [Gemella moribillum M424]
 gi|316913867|gb|EFV35351.1| polypeptide deformylase [Gemella moribillum M424]
          Length = 184

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 18/182 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++I P   LR  +  ++  I+ +    +  +LE + ++             GIGLA
Sbjct: 3   TTKDIIIDPHDTLRARAEEVKAPISDEDKATLRGLLEYVIASQDDEKAEKLGLKPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDD--FSVYQEGCLSIP-DYRAD 103
           A QI V  R++ + + D  + +N +     NPKII+ S    +    EGCLS+  + +  
Sbjct: 63  APQINVSKRMIAVHIPDDENPENTVSYALYNPKIISNSVAKCYLAGGEGCLSVDKEIQGY 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V R + I V   + N +   +    L + C QHE+DHLNGI+F DH+++     +  +  
Sbjct: 123 VPRYSKIKVVGYNENDEKITLTLTDLPSICFQHEIDHLNGIMFYDHINKENPFDVPAEYE 182

Query: 164 KL 165
           KL
Sbjct: 183 KL 184


>gi|52785431|ref|YP_091260.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|319646166|ref|ZP_08000396.1| peptide deformylase [Bacillus sp. BT1B_CT2]
 gi|52347933|gb|AAU40567.1| YkrB [Bacillus licheniformis ATCC 14580]
 gi|317391916|gb|EFV72713.1| peptide deformylase [Bacillus sp. BT1B_CT2]
          Length = 185

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             + +V    P LR V+  ++   + + +  +  M+E + ++             G+GLA
Sbjct: 4   TMENIVRDGHPALRTVAEEVQLPASEEEIKQLSEMIEFVKNSQDPEIAKKYNLRPGVGLA 63

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105
           A QI +  R++ +  +            NPKI++ S    +    EGCLS+ +     V 
Sbjct: 64  APQININKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPIPGYVP 123

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   I V+      ++  I   G  A   QHE+DHLNGI+F DH+ + 
Sbjct: 124 RYERIRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDKE 171


>gi|52080056|ref|YP_078847.1| peptide deformylase [Bacillus licheniformis ATCC 14580]
 gi|52003267|gb|AAU23209.1| main formylmethionine deformylase [Bacillus licheniformis ATCC
           14580]
          Length = 184

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             + +V    P LR V+  ++   + + +  +  M+E + ++             G+GLA
Sbjct: 3   TMENIVRDGHPALRTVAEEVQLPASEEEIKQLSEMIEFVKNSQDPEIAKKYNLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105
           A QI +  R++ +  +            NPKI++ S    +    EGCLS+ +     V 
Sbjct: 63  APQININKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPIPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   I V+      ++  I   G  A   QHE+DHLNGI+F DH+ + 
Sbjct: 123 RYERIRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDKE 170


>gi|213428282|ref|ZP_03361032.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
          Length = 115

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/118 (38%), Positives = 80/118 (67%), Gaps = 3/118 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R+  + +R +D N
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRN 115


>gi|16800112|ref|NP_470380.1| peptide deformylase [Listeria innocua Clip11262]
 gi|23396547|sp|Q92CX8|DEF_LISIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|16413502|emb|CAC96274.1| lin1043 [Listeria innocua Clip11262]
 gi|313619530|gb|EFR91206.1| peptide deformylase [Listeria innocua FSL S4-378]
 gi|313624273|gb|EFR94321.1| peptide deformylase [Listeria innocua FSL J1-023]
          Length = 183

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L  +MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVATEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     EGCLS+  +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +   G  A  +QHE+DHLNG++F DH+++ 
Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGVMFYDHINKE 170


>gi|317129375|ref|YP_004095657.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522]
 gi|315474323|gb|ADU30926.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522]
          Length = 193

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++    P LR+ +  +    N +   ++ NM++ +  +             G+G+A
Sbjct: 3   TMKDVIREGHPTLRKRAEEVNLPANEEDTAILQNMIDFLIHSQDPEIAEKYDLRPGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVK 105
           A QI V  R++ + + DH      +   NPKII+ S + +  +  EGCLS+  +    V 
Sbjct: 63  APQINVSKRMIAVRVDDHNENLIEVGLFNPKIISHSIETTHLENGEGCLSVDREVPGIVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R A I V     + +   +   GL A   QHE+DHLNGI+F D + 
Sbjct: 123 RYARIKVEGTSIDGEKITLKLKGLPAIVFQHEIDHLNGIMFYDRIE 168


>gi|195107438|ref|XP_001998319.1| GI23899 [Drosophila mojavensis]
 gi|193914913|gb|EDW13780.1| GI23899 [Drosophila mojavensis]
          Length = 203

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 17/159 (10%)

Query: 10  PDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR  S  +      + +I+ ++D M++V+   D +G+AA Q+GV  R++ ++ ++ 
Sbjct: 20  GDPVLRIRSDEVSPERLDSKEILGIVDQMVKVLRHYDCVGVAAPQLGVPLRIIAMEFREE 79

Query: 67  AHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
              +                 VFINPKI    D      EGC+S+  + A V R   + V
Sbjct: 80  KREQFTPEVYLQRKMSTLPLSVFINPKIEIIGDMQHTQPEGCMSVRGFSARVARYDRVRV 139

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +        +   G  A   QHE+DHLNGI++ID + 
Sbjct: 140 TGIGMLGTPDELELVGWSARIAQHEMDHLNGIIYIDRMD 178


>gi|289551005|ref|YP_003471909.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
 gi|289180537|gb|ADC87782.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
          Length = 162

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+    P+L+R ++ + + +  +  L+ ++ + +Y  +   L A QIG+  ++ +
Sbjct: 1   MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      +  +  INP II  SD+  +  EG +S+P    +V RS  I V+  D    
Sbjct: 61  VDM----EMEGLLQLINPTIIKVSDEQVIDLEGSISLPGIYGEVARSQMIVVQSYDVQGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              + A   +A  +QH +D +NGI F +   ++  D 
Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKILTDK 153


>gi|168693535|ref|NP_001108286.1| peptide deformylase (mitochondrial) [Xenopus laevis]
 gi|163916521|gb|AAI57494.1| LOC100137680 protein [Xenopus laevis]
          Length = 240

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 17/160 (10%)

Query: 10  PDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
            DP+LR  +  +   +    D   +++ ++ V+ +   +G++A Q+GV  R++ +   + 
Sbjct: 68  GDPVLRCTAACVPSAHVSHPDTQAIVNQLVRVLSAGCCVGISAPQLGVPLRILAVAFPEQ 127

Query: 67  AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
             +  P               +FINP++   +     + EGC S+  + A V R   + +
Sbjct: 128 MCQAVPPEVRQAREMSPFPLQIFINPEMRILNSQTLSFPEGCSSVQGFSAVVPRYYAVEI 187

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             ++   +H    A G  A  +QHE+DHL+G+L+ID +  
Sbjct: 188 SGLNPKGEHITWQAQGWAARIIQHEMDHLDGVLYIDKMDP 227


>gi|315281776|ref|ZP_07870335.1| peptide deformylase [Listeria marthii FSL S4-120]
 gi|313614586|gb|EFR88171.1| peptide deformylase [Listeria marthii FSL S4-120]
          Length = 183

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L  +MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     EGCLS+  +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +      A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINKE 170


>gi|157825792|ref|YP_001493512.1| polypeptide deformylase [Rickettsia akari str. Hartford]
 gi|157799750|gb|ABV75004.1| Polypeptide deformylase [Rickettsia akari str. Hartford]
          Length = 129

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/118 (41%), Positives = 80/118 (67%), Gaps = 1/118 (0%)

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
            +G+L R+ +++L ++ ++ +P+V INP+I  FS+    + E  LS P   A + RS  I
Sbjct: 1   MVGILKRIAIVELHEN-NKSSPIVLINPEITYFSEAKQTFIECSLSFPGIEASITRSKVI 59

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            V+Y+D +   Q + A+G LAT +QH++D+LNG  F+D+LS+LKRDM+ KKM K ++L
Sbjct: 60  KVKYLDYDGNKQELDAEGFLATVIQHKIDYLNGKTFLDYLSKLKRDMLLKKMLKHIKL 117


>gi|145342766|ref|XP_001416260.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus
           CCE9901]
 gi|144576485|gb|ABO94553.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus
           CCE9901]
          Length = 274

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 18/172 (10%)

Query: 4   KPLVIFPDPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +V    P LR V+R   +++I+S +I  LI  ML V     G+GLAA Q+G   R+VV
Sbjct: 53  RDVVQAGAPALRDVARAVDVDEIDSTEIQELIAEMLRVCR-ARGVGLAAPQLGARRRVVV 111

Query: 61  IDLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           ++                         V +NP +    D  + + EGCLS+  YRA V+R
Sbjct: 112 LEDTTEGMSDETSEALAMKRREAFRAKVIVNPTLTPIGDASAAFFEGCLSVAGYRAVVRR 171

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              +  R    + +     A G  A  LQHE+DHL+G+L+ D +       +
Sbjct: 172 HLRVRCRGYGGDGKPVDFEAVGWEARILQHEVDHLDGVLYTDRMESRTLRRV 223


>gi|46907283|ref|YP_013672.1| peptide deformylase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092943|ref|ZP_00230724.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858]
 gi|226223669|ref|YP_002757776.1| formylmethionine deformylase [Listeria monocytogenes Clip81459]
 gi|254823676|ref|ZP_05228677.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194]
 gi|254853062|ref|ZP_05242410.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503]
 gi|254933401|ref|ZP_05266760.1| polypeptide deformylase [Listeria monocytogenes HPB2262]
 gi|254992568|ref|ZP_05274758.1| peptide deformylase [Listeria monocytogenes FSL J2-064]
 gi|255522443|ref|ZP_05389680.1| peptide deformylase [Listeria monocytogenes FSL J1-175]
 gi|300765902|ref|ZP_07075875.1| peptide deformylase [Listeria monocytogenes FSL N1-017]
 gi|67460118|sp|Q721B5|DEF_LISMF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|259645183|sp|C1L1X2|DEF_LISMC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|46880550|gb|AAT03849.1| peptide deformylase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018690|gb|EAL09442.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858]
 gi|225876131|emb|CAS04837.1| Putative formylmethionine deformylase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606409|gb|EEW19017.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503]
 gi|293584962|gb|EFF96994.1| polypeptide deformylase [Listeria monocytogenes HPB2262]
 gi|293592898|gb|EFG00659.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194]
 gi|300513364|gb|EFK40438.1| peptide deformylase [Listeria monocytogenes FSL N1-017]
 gi|328466823|gb|EGF37937.1| peptide deformylase [Listeria monocytogenes 1816]
 gi|332311460|gb|EGJ24555.1| Peptide deformylase 1 [Listeria monocytogenes str. Scott A]
          Length = 183

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L   MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVATEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     EGCLS+  +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +   G  A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 170


>gi|312131008|ref|YP_003998348.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
 gi|311907554|gb|ADQ17995.1| peptide deformylase [Leadbetterella byssophila DSM 17132]
          Length = 218

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 74/167 (44%), Gaps = 5/167 (2%)

Query: 1   MVKKPLVIFPDP--ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M++      PD   IL  +S+ I   +  +  L   M   +    G+G+AA Q+GV    
Sbjct: 40  MMRITQTTDPDDLQILSAISQDISPDDPLLPLLAKRMHLAVKQAGGVGIAAPQVGVNRN- 98

Query: 59  VVIDLQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
             I +Q       P  F INPKI   S+   +  EGCLSIPD R +V RS  I + Y   
Sbjct: 99  -AIWVQRFDKPGQPFEFYINPKITWKSELLQLGAEGCLSIPDTRDNVVRSYAIQLSYSQL 157

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           N  H     +G  A   QHE+DHL GILF   +         K   K
Sbjct: 158 NGAHHTEVIEGFTAVIFQHEIDHLYGILFPQRVDEQNTQEFKKSEEK 204


>gi|42518919|ref|NP_964849.1| peptide deformylase [Lactobacillus johnsonii NCC 533]
 gi|227889778|ref|ZP_04007583.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
 gi|268319683|ref|YP_003293339.1| peptide deformylase [Lactobacillus johnsonii FI9785]
 gi|81703847|sp|Q74JW2|DEF_LACJO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|41583205|gb|AAS08815.1| peptide deformylase [Lactobacillus johnsonii NCC 533]
 gi|227849642|gb|EEJ59728.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
 gi|262398058|emb|CAX67072.1| peptide deformylase [Lactobacillus johnsonii FI9785]
          Length = 184

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +    +P+LR+V++P+   ++ +   L D+M++ + ++             G+GLAA Q
Sbjct: 6   DITRDGNPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107
           +G   ++  + +  D        VF+NPKI++ S   +     EGCLS+  D    V R 
Sbjct: 66  VGESVQMAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRP 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + +RY   + + + I      A    HE+DHLNG LF D +++
Sbjct: 126 DKLKIRYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|196004180|ref|XP_002111957.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens]
 gi|190585856|gb|EDV25924.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens]
          Length = 201

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 17/162 (10%)

Query: 6   LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +    + +LR  +  ++    +++D+  LID M++ M S   +G+AA Q+G   R++ ++
Sbjct: 32  IRQAGESVLREKAAAVDPTAIVSTDVKKLIDRMIKTMRSHGDLGIAAPQLGRPLRIITLE 91

Query: 63  LQD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           +                        V INP++    +      E C SI +  A V R  
Sbjct: 92  ITKRHLSYLQAQYRNVVQRDTVPLQVLINPQLKVLDNHKVAEYESCSSIHNCMAKVPRYT 151

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + V  +D +       ADG L+  LQHE+DHL+G+L++D +
Sbjct: 152 TVEVSALDRHGNRINYIADGWLSRILQHEVDHLDGLLYVDKM 193


>gi|217964856|ref|YP_002350534.1| peptide deformylase [Listeria monocytogenes HCC23]
 gi|290893798|ref|ZP_06556777.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071]
 gi|254767592|sp|B8DCF7|DEF_LISMH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|217334126|gb|ACK39920.1| peptide deformylase [Listeria monocytogenes HCC23]
 gi|290556625|gb|EFD90160.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071]
 gi|307570585|emb|CAR83764.1| polypeptide deformylase [Listeria monocytogenes L99]
 gi|313609509|gb|EFR85061.1| peptide deformylase [Listeria monocytogenes FSL F2-208]
          Length = 183

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L  +MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEEMAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     EGCLS+  +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +      A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINKE 170


>gi|154685863|ref|YP_001421024.1| peptide deformylase [Bacillus amyloliquefaciens FZB42]
 gi|154351714|gb|ABS73793.1| DefB [Bacillus amyloliquefaciens FZB42]
          Length = 184

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             + +V    P LR ++  ++   + +    + +M+E + ++             G+GLA
Sbjct: 3   TMENIVRDGHPALREIAEEVQLPASDEEKQHLADMIEFVKNSQNPELAEKYKLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105
           A Q  V  R++ +  +D           NPKI++ S +  +    EGCLS+ +     V 
Sbjct: 63  APQTDVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPIPGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R A I V+ +    +   I   G  A   QHE+DHLNG++F DH+ + 
Sbjct: 123 RYARIRVKAVTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170


>gi|330470474|ref|YP_004408217.1| formylmethionine deformylase [Verrucosispora maris AB-18-032]
 gi|328813445|gb|AEB47617.1| formylmethionine deformylase [Verrucosispora maris AB-18-032]
          Length = 195

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 6/153 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61
             P+V  P P+L R    ++    + + L  +++  M  + G +GLAA Q+GV  ++  +
Sbjct: 31  VLPVVSAPHPVLSRAGAQVDPTAEETVRLAADLVATMRVSPGCVGLAAPQVGVGAQVFAV 90

Query: 62  DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MDC 117
           D+  HA         V  N +++  +  +   +EGC+S+PD   DVKR++ + V   +  
Sbjct: 91  DVTGHAKAVTVHGTFVLCNARVVEAT-RWKAGREGCMSVPDLTGDVKRASRLVVEGALPG 149

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           + +   +  DG  A  LQHE+DH  G+LF+D +
Sbjct: 150 SGEQVRLVTDGFEARALQHEIDHCAGLLFLDRV 182


>gi|225387512|ref|ZP_03757276.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme
           DSM 15981]
 gi|225046442|gb|EEG56688.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme
           DSM 15981]
          Length = 155

 Score =  137 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 7/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLV 59
           M  + +    D  LR+  + ++ ++  +  L+D+M++ +++T+G    A  Q+G+L RLV
Sbjct: 1   MAVRTIRTEGDEALRKRCKEVKNVDERVRALLDDMMDTLHATEGAAALAANQVGILKRLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID     +    +  +NP I+   D      EGCLS P   A   R   +TV+ +D N 
Sbjct: 61  VID-----YCGCVLKLVNPVIVGR-DGVQECLEGCLSFPGRIATTIRPQSVTVQALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
           +  ++  +G +A C  HEL+HL+G +F+D 
Sbjct: 115 KEVLLTGEGEMAKCYCHELEHLDGEVFLDR 144


>gi|256842908|ref|ZP_05548396.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|293381229|ref|ZP_06627236.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|312977571|ref|ZP_07789318.1| peptide deformylase [Lactobacillus crispatus CTV-05]
 gi|256614328|gb|EEU19529.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|290922197|gb|EFD99192.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|310895310|gb|EFQ44377.1| peptide deformylase [Lactobacillus crispatus CTV-05]
          Length = 184

 Score =  137 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++P+    +     L D+M++ +  +             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRQVAKPLTFPFSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + + D   +     V++NP+I++ S   +     EGCLS+ +     V R
Sbjct: 65  QVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|227512180|ref|ZP_03942229.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
 gi|227084574|gb|EEI19886.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
          Length = 185

 Score =  137 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 24/176 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +V   DP+LR+ ++ ++  +++D   L  N++E +  +             G+GLAA Q
Sbjct: 3   DIVRDGDPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 62

Query: 52  IGVLYRLVVIDLQ--DHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRAD 103
           +GV   +  + +   D   +  P+   V INP I++ S         EGCLS+  D    
Sbjct: 63  VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL---SRLKRD 156
           V RSA IT++Y D +     I      A   QHE+DHL+GILF DH+   +  KRD
Sbjct: 123 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 178


>gi|329769034|ref|ZP_08260456.1| peptide deformylase 2 [Gemella sanguinis M325]
 gi|328839525|gb|EGF89101.1| peptide deformylase 2 [Gemella sanguinis M325]
          Length = 184

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 18/182 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++I P   LR+ +  ++  I+ +   ++ ++LE + ++             GIGLA
Sbjct: 3   TTKDIIIDPHETLRKRAEEVKSPISDEDKEILRSLLEYVIASQDDEKAEELGLKPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFS--DDFSVYQEGCLSIPD-YRAD 103
           A QI V  R++ + + D  + +  +     NPKII+ S    +    EGCLS+ +  +  
Sbjct: 63  APQINVSKRMIAVHIPDEENPEYTVSYALYNPKIISNSAAKCYLAGGEGCLSVEEEKKGY 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V R + I V   D N +   +    L A C QHE+DHLNGI+F DH+++     + ++  
Sbjct: 123 VPRYSKIKVIGYDENDEKVTLVLTDLPAICFQHEIDHLNGIMFYDHINKDNPFDVPEEYE 182

Query: 164 KL 165
           +L
Sbjct: 183 RL 184


>gi|227524090|ref|ZP_03954139.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
 gi|227088721|gb|EEI24033.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
          Length = 188

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 24/176 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +V   DP+LR+ ++ ++  +++D   L  N++E +  +             G+GLAA Q
Sbjct: 6   DIVRDGDPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQ--DHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRAD 103
           +GV   +  + +   D   +  P+   V INP I++ S         EGCLS+  D    
Sbjct: 66  VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 125

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL---SRLKRD 156
           V RSA IT++Y D +     I      A   QHE+DHL+GILF DH+   +  KRD
Sbjct: 126 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181


>gi|329767966|ref|ZP_08259477.1| peptide deformylase 2 [Gemella haemolysans M341]
 gi|328838451|gb|EGF88059.1| peptide deformylase 2 [Gemella haemolysans M341]
          Length = 184

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 18/182 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++I P   LR  +  ++  I+ +   ++  +LE + ++             GIGLA
Sbjct: 3   TTKDIIIDPHATLRARAEEVKSPISDEDKAILRGLLEYVIASQDDEKAEKLGLKPGIGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFS--DDFSVYQEGCLSIP-DYRAD 103
           A QI V  R++ + + D    ++ +     NPKII+ S    +    EGCLS+  + +  
Sbjct: 63  APQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSAAKCYLAGGEGCLSVDKEIKGY 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V R + I V   + N +   +    L A C QHE+DHLNG++F DH+++     +  +  
Sbjct: 123 VPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFYDHINKENPFDVPAEYE 182

Query: 164 KL 165
           KL
Sbjct: 183 KL 184


>gi|27467808|ref|NP_764445.1| putative polypeptide deformylase [Staphylococcus epidermidis ATCC
           12228]
 gi|57866753|ref|YP_188364.1| polypeptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251810645|ref|ZP_04825118.1| possible peptide deformylase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876353|ref|ZP_06285220.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|39931130|sp|Q8CPI9|DEFL_STAES RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|81674925|sp|Q5HPX6|DEFL_STAEQ RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide
           deformylase-like
 gi|27315352|gb|AAO04487.1|AE016746_277 putative polypeptide deformylase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637411|gb|AAW54199.1| polypeptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251805805|gb|EES58462.1| possible peptide deformylase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295378|gb|EFA87905.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|319401492|gb|EFV89702.1| polypeptide deformylase family protein [Staphylococcus epidermidis
           FRI909]
 gi|329730010|gb|EGG66401.1| peptide deformylase [Staphylococcus epidermidis VCU144]
 gi|329736235|gb|EGG72507.1| peptide deformylase [Staphylococcus epidermidis VCU028]
          Length = 162

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL +  +P+   +  +  L++++ + +Y  +   ++A QIGV   + +
Sbjct: 1   MTVKKLVKSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     ++  +  INP + + S +     EG +S+P    +VKRS  ITV+  D N  
Sbjct: 61  IDM----EQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
              + A   +A  + H +DHLNGI F   
Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145


>gi|325684372|gb|EGD26541.1| peptide deformylase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 207

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++ +   ++     L D+M+E + ++             G+GLAA 
Sbjct: 28  KDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAP 87

Query: 51  QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G    +  + + D         V++NP+II+ S   +     EGCLS+       V R
Sbjct: 88  QVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLGEGEGCLSVDKVIDGYVPR 147

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +TV Y   + + + I   G  A    HE+DHLNG LF D +++ 
Sbjct: 148 PNKVTVHYWTADGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 194


>gi|315302541|ref|ZP_07873376.1| peptide deformylase [Listeria ivanovii FSL F6-596]
 gi|313629103|gb|EFR97401.1| peptide deformylase [Listeria ivanovii FSL F6-596]
          Length = 183

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR+V+  +   ++ +   L   MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALRKVASEVTFPLSDEEKKLGREMLEFLINSQDEEVAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     EGCLS+  +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D +     +   G  A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDEDGAPLKLRFKGYPAIVVQHEIDHLNGIMFYDHINKE 170


>gi|167462507|ref|ZP_02327596.1| Def2 [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383825|ref|ZP_08057572.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151641|gb|EFX44714.1| peptide deformylase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 195

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 16/164 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V   DPILR V++P+    + +    +  ML+ + ++             G+GL+A Q
Sbjct: 14  DIVREGDPILREVTQPVHVPPSEEDRETLCCMLQFLKNSQDPELAEKYQLRGGVGLSANQ 73

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSA 108
           IG+  R+    LQD   + +  + +NP+II+ S   +     EGCLS+       V R  
Sbjct: 74  IGLNKRMFAAYLQDEQGKTHEYMVVNPQIISHSAAMTYLDQGEGCLSVDRPVPGFVPRYE 133

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I V+  D N +  ++   G ++   QHE+DHLNGI+F DH+ +
Sbjct: 134 RIKVKAYDINGEEVVLRLKGYVSIVFQHEMDHLNGIMFYDHIDK 177


>gi|323488852|ref|ZP_08094092.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2]
 gi|323397550|gb|EGA90356.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2]
          Length = 188

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K ++    P LR  +  ++  ++ +   L +++LE + ++             G+G+AA 
Sbjct: 5   KDIIREGHPTLRERAEEVKFPLSEEDRQLGEDLLEYVVNSQDDELAEKYDLRPGVGIAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVKRS 107
           Q+    R+  +   D+      +V  NPKI++ S +  +    EGCLS+       V R 
Sbjct: 65  QVNQAKRIFALHFDDNTGENLSLVVFNPKIVSHSVEKTYLAAGEGCLSVDRAVPGYVPRY 124

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           A IT++ ++ N +   +   GL A   QHELDHLNG++F DH+ 
Sbjct: 125 ARITIKALNINGEEIKMRLKGLPAIAFQHELDHLNGVMFFDHID 168


>gi|315038072|ref|YP_004031640.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
 gi|312276205|gb|ADQ58845.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
          Length = 184

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++P+   ++     L D+M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + + D   +     +++NP+II+ S   +     EGCLS+ +     V R
Sbjct: 65  QVGESVQMAALLVPDDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDEVINGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|228475040|ref|ZP_04059768.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|314936623|ref|ZP_07843970.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
 gi|228271025|gb|EEK12413.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|313655242|gb|EFS18987.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
          Length = 162

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    P+L + ++ I   + ++  L+ ++ + +YS +   L+A QIGV  R+ +
Sbjct: 1   MAIKKLVPSTHPVLFKKAKKITTFDENLKRLLLDIEDTLYSEEASALSAPQIGVSQRVAM 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +  INPKI T S++  +  EG +++P+   +V+RS  ITV   D    
Sbjct: 61  IDM----EAEGLLQLINPKIKTESNEKIIDLEGSVNLPNVFGEVERSKMITVEANDLEGH 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              + A   +A  + H +D L+GI F +   ++  + 
Sbjct: 117 EIELTAYDDVARMILHIIDQLDGIPFTERAIKILTEK 153


>gi|311029756|ref|ZP_07707846.1| peptide deformylase [Bacillus sp. m3-13]
          Length = 184

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++    P LR V+  +    + +    +  M+E + ++             G+GLA
Sbjct: 3   TAKDIIKEGHPTLRVVASDVSLPPSQEDSITLQKMMEYLQNSQNPDISQQYNLRPGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIP-DYRADVK 105
           A QI V  +++ + ++D +   +     NP+I++ S + S     EGCLS+  D    V 
Sbjct: 63  APQINVPKKMIAVHIRDESGTLHSYALFNPRIVSHSVEKSFLTSGEGCLSVDRDVPGLVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R A +TV+      +   +   GL+A   QHE+DHLNG++F DH++
Sbjct: 123 RYARVTVKATTLQGEEIKLRLKGLVAIVFQHEIDHLNGVMFYDHIN 168


>gi|310827878|ref|YP_003960235.1| peptide deformylase [Eubacterium limosum KIST612]
 gi|308739612|gb|ADO37272.1| peptide deformylase [Eubacterium limosum KIST612]
          Length = 148

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 7/150 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLV 59
           M K PL    DP+L++  + ++ ++  I +L++ M+  +  T G   LAA Q+G+L +LV
Sbjct: 1   MPKLPLHYNDDPVLKQKCQSVQVVDDSIRSLLNAMMNTLQLTPGAAALAANQVGILLQLV 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID   +  +      +NP+I+          E CLS P       R   + VR +D N 
Sbjct: 61  VIDYAGYHLK-----LVNPEILDTEGSRECM-ESCLSFPGRHIMTLRPRAVRVRALDENG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149
               +   G +A CL HE+DHL GI+FI+ 
Sbjct: 115 VVIYLDVSGEMAKCLCHEIDHLRGIVFIER 144


>gi|227517325|ref|ZP_03947374.1| peptide deformylase [Enterococcus faecalis TX0104]
 gi|227075195|gb|EEI13158.1| peptide deformylase [Enterococcus faecalis TX0104]
          Length = 187

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML  + ++             G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101
           A Q+ +  R++ + +  +           V  NPKI++ S         EGCLS+  D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D + +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMDGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|325956526|ref|YP_004291938.1| peptide deformylase [Lactobacillus acidophilus 30SC]
 gi|325333091|gb|ADZ06999.1| peptide deformylase [Lactobacillus acidophilus 30SC]
          Length = 184

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++P+   ++     L D+M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + + D   +     +++NP+II+ S   +     EGCLS+       V R
Sbjct: 65  QVGESVQMAALLVPDDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDKVINGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|331701103|ref|YP_004398062.1| peptide deformylase [Lactobacillus buchneri NRRL B-30929]
 gi|329128446|gb|AEB72999.1| Peptide deformylase [Lactobacillus buchneri NRRL B-30929]
          Length = 188

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 21/170 (12%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+ ++ ++  ++ +   L  +++E +  +             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRKQAQKVKFPLSKEDKQLAHDLMEYLEVSQDPEQCEKLGLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDL--QDHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRA 102
           Q+GV   +  + +  +D   +  P+   V INP I++ S         EGCLS+  D   
Sbjct: 65  QVGVSEMMASVLVPSEDEDEKDEPVFKDVIINPVIVSNSVQRGALTEGEGCLSVDKDIPG 124

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V R+A IT++Y D + +   +      A   QHE+DHL+G LF DH+++
Sbjct: 125 YVPRAARITLKYQDVDGKEHKVRLKNYPAIVCQHEIDHLHGTLFYDHINK 174


>gi|260101766|ref|ZP_05752003.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
 gi|260084410|gb|EEW68530.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
          Length = 181

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 17/174 (9%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++P+   ++     L ++M+E + ++             G+GLAA 
Sbjct: 2   KDIVRDGDPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 61

Query: 51  QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + + D         V++NP+I++ S   +     EGCLS+       V R
Sbjct: 62  QVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPR 121

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              +T+ Y   + + + I      A    HE+DHLNG LF D +++ +   + +
Sbjct: 122 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKE 175


>gi|313239303|emb|CBY14251.1| unnamed protein product [Oikopleura dioica]
          Length = 165

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 8/154 (5%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +   DP LR +S+ +E  +  +  +++ M  V    D +GLAA QIG+  R++++ LQ+ 
Sbjct: 18  LQIGDPKLREISKKVENYDD-LGKIVEEMKSVARKYDALGLAAPQIGINQRIILLTLQNG 76

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NAQHQIIY 125
             +    +F+NP II  S       EGCLS+P   A V R   I ++  D    +     
Sbjct: 77  KEK----IFVNPVIIGKSSKIVPSIEGCLSVPALVASVPRHESIRLKAFDFGKGKEVTED 132

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
                + CLQHE+DHLNGILF+D +   +++MI 
Sbjct: 133 FKEEDSFCLQHEIDHLNGILFLDRVE--EKEMIK 164


>gi|326331194|ref|ZP_08197489.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
 gi|325951015|gb|EGD43060.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
          Length = 178

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 6/153 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61
              +V  P  +L    + ++    + + L  +++  M  + G +GLAA Q+GV  R+  +
Sbjct: 14  VLDVVRAPAHVLSVPGKDVDPAAPETVQLAADLIATMRVSPGCVGLAADQVGVSARIFCV 73

Query: 62  DLQDHAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DC 117
           D+  H   +      V  N +++  S +    +EGC+S+PD   DVKR++ + VR     
Sbjct: 74  DVSTHVKTRTHHGTYVLCNAEVVEASRNEKA-REGCMSVPDLTGDVKRASRLKVRGQLPV 132

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             +   I  D   A CLQHE+DH NG+LFID +
Sbjct: 133 TGETVEIVTDAFEARCLQHEIDHTNGLLFIDRV 165


>gi|315658500|ref|ZP_07911372.1| peptide deformylase [Staphylococcus lugdunensis M23590]
 gi|315496829|gb|EFU85152.1| peptide deformylase [Staphylococcus lugdunensis M23590]
          Length = 162

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 4/157 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+    P+L+R ++ + + +  +  L+ ++ + +Y  +   L A QIG+  ++ +
Sbjct: 1   MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      +  +  INP II  SD+  +  EG +S+PD   +V RS  I V+  D    
Sbjct: 61  VDM----EMEGLLQLINPTIIKASDEQVIDLEGSISLPDIYGEVARSQMIVVQSYDVQGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
              + A   +A  +QH +D +NGI F +   ++  D 
Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKILTDK 153


>gi|327183352|gb|AEA31799.1| peptide deformylase [Lactobacillus amylovorus GRL 1118]
          Length = 184

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++P+   ++     L D+M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + +  D        +++NP+II+ S   +     EGCLS+ +     V R
Sbjct: 65  QVGESVQMAALLVPNDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDEVINGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|315640077|ref|ZP_07895202.1| peptide deformylase [Enterococcus italicus DSM 15952]
 gi|315484205|gb|EFU74676.1| peptide deformylase [Enterococcus italicus DSM 15952]
          Length = 196

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVM------------YSTDGIGLAAVQI 52
           ++    P LR +++ +   +      L  +M E +            +   G+GLAA Q+
Sbjct: 17  IIREGHPTLREIAKEVTFPLTEQEQQLGKDMFEFLVNSQDPIKAEELHLRGGVGLAAPQV 76

Query: 53  GVLYRLVVIDLQDHAHRKNP---MVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKR 106
            V  R++ + +        P    V  NPKI++ S  D      EGCLS+  D    V R
Sbjct: 77  NVSKRMIAVLVPSEQEDGEPEFAGVLYNPKIVSHSVQDACLGDGEGCLSVDRDVPGYVVR 136

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            A +T+ Y D       I      +  +QHE+DHLNG+LF D ++
Sbjct: 137 HARVTIAYQDETGAAHKIRLKNYPSIVVQHEIDHLNGVLFYDRIN 181


>gi|23098865|ref|NP_692331.1| peptide deformylase [Oceanobacillus iheyensis HTE831]
 gi|32363150|sp|Q8ER96|DEF_OCEIH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22777092|dbj|BAC13366.1| formylmethionine deformylase [Oceanobacillus iheyensis HTE831]
          Length = 183

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 16/166 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K +V    P L R +  +E  ++ D   L+++M++ + ++             G+G+A
Sbjct: 3   TMKDIVREGHPSLTRSAAVVEVPLSKDDKQLLEDMMQFLKNSQDEEIAEKYELRAGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVK 105
           A Q+G+  +++ I  +D   +   M  +NPKII+ S +  +    EGCLS+       V 
Sbjct: 63  APQLGIEKQIIAIHFEDIDGKLYSMGLVNPKIISHSVEQSYLSSGEGCLSVDRPVEGYVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R A IT++  D N Q   +   G  A   QHE+DH+NGI+F D ++
Sbjct: 123 RHARITIKATDINDQPVKLRLKGYPAIVFQHEIDHINGIMFFDRIN 168


>gi|330685497|gb|EGG97150.1| peptide deformylase [Staphylococcus epidermidis VCU121]
          Length = 162

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 7/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PI  + + P+E  +  +   + ++ + +Y+ +G  L+A QIG+  ++ +
Sbjct: 1   MSVKKLVKSEHPIFNQPANPVEHFDDQLKQTLMDIEDSLYALEGSALSANQIGINQQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      +  +  INPKI   S++     EG +S+P+   +V+R+  I V   D N  
Sbjct: 61  VDM----EMEGLLQLINPKIKNQSEETITDLEGSVSLPNVFGEVERNKMIVVESNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + A   +A  + H +D LNGI F +     KR +  ++M    +
Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTEKA---KRILSEEEMEAYFE 160


>gi|242373312|ref|ZP_04818886.1| peptide deformylase [Staphylococcus epidermidis M23864:W1]
 gi|242349022|gb|EES40624.1| peptide deformylase [Staphylococcus epidermidis M23864:W1]
          Length = 183

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ +   I+ +    + +M E + ++             G+GLA
Sbjct: 3   TMKDIIKDGHPTLREKAKELSFPISEEDKETLRSMREFLINSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           A QI V  R++ + L D    +    + +NPK+++ S  + +    EGCLS+  +    V
Sbjct: 63  APQINVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSHSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNG++F DH+ 
Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDHID 169


>gi|153955271|ref|YP_001396036.1| Def2 [Clostridium kluyveri DSM 555]
 gi|146348129|gb|EDK34665.1| Def2 [Clostridium kluyveri DSM 555]
          Length = 191

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 16/168 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K +V   + IL R +  +    + +    + +M+  + ++             G+GL+
Sbjct: 11  TMKDIVREGNDILHRPTLEVMVPPSEEDKETLTSMMNFLKNSQDSILSKKYKLRGGVGLS 70

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVK 105
           A QIG+  R+ V+   D   +++    INPKII+ S         EGCLS+       V 
Sbjct: 71  ANQIGLNKRMFVVYFTDEKGKEHEYTLINPKIISHSVSMIYLPPSEGCLSVDRVIDGFVP 130

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           R   I V+  +   +  I+  +G  +  +QHE+DHLNGI+F + +++ 
Sbjct: 131 RYERIKVKGFNLEGEEIILKLNGYSSIVIQHEIDHLNGIMFYERINKE 178


>gi|293366820|ref|ZP_06613496.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319121|gb|EFE59491.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736680|gb|EGG72946.1| peptide deformylase [Staphylococcus epidermidis VCU045]
          Length = 162

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL +  +P+   +  +  L++++ + +Y  +   ++A QIGV   + +
Sbjct: 1   MTVKKLVNSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     ++  +  INP + + S +     EG +S+P    +VKRS  ITV+  D N  
Sbjct: 61  IDM----EQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
              + A   +A  + H +DHLNGI F   
Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145


>gi|159463808|ref|XP_001690134.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284122|gb|EDP09872.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 250

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 43  DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           DG+GLAA Q+GV  RL+V +        N  + +NP+I+       + +EGCLS P    
Sbjct: 97  DGVGLAAPQVGVNVRLMVFNPMGRDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYG 156

Query: 103 DVKRSAFITVRYMDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           DV+RS  I V+ +D   Q   +   D  +A   QHE DHL G+LF D +     + +  +
Sbjct: 157 DVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEFDHLQGVLFHDRMKPSVLETVRPE 216

Query: 162 MSKLVQ 167
           +  L +
Sbjct: 217 LVALEE 222


>gi|161507335|ref|YP_001577289.1| peptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|172048229|sp|A8YUR0|DEF_LACH4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|160348324|gb|ABX26998.1| Peptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|328468535|gb|EGF39537.1| peptide deformylase [Lactobacillus helveticus MTCC 5463]
          Length = 184

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 17/174 (9%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++P+   ++     L ++M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + + D         V++NP+I++ S   +     EGCLS+       V R
Sbjct: 65  QVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              +T+ Y   + + + I      A    HE+DHLNG LF D +++ +   + +
Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKE 178


>gi|289434312|ref|YP_003464184.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170556|emb|CBH27096.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313633912|gb|EFS00628.1| peptide deformylase [Listeria seeligeri FSL N1-067]
          Length = 183

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L   MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVASEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     EGCLS+  +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +   G  A  +QHE+DHLNGI+F DH++  
Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGIMFYDHINSE 170


>gi|329576776|gb|EGG58269.1| peptide deformylase [Enterococcus faecalis TX1467]
          Length = 131

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 4/116 (3%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
           M E M + DGIGLAA QIG   ++ VI++ + + R      INP II      S+  EGC
Sbjct: 1   MYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGRFE---LINPVIIEKKG-TSIDVEGC 56

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           LSIP+    V+R+  +TVRY D   +   + A G LA   QHE+DHLNG LFID +
Sbjct: 57  LSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQHEIDHLNGELFIDKM 112


>gi|313638473|gb|EFS03653.1| peptide deformylase [Listeria seeligeri FSL S4-171]
          Length = 183

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L   MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVASEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108
           + V  R + I + D   R    V  NPKI + S   +     EGCLS+  +    V RS 
Sbjct: 66  LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +T+   D N     +   G  A  +QHE+DHLNGI+F DH++
Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGIMFYDHIN 168


>gi|242242497|ref|ZP_04796942.1| possible peptide deformylase [Staphylococcus epidermidis W23144]
 gi|242234071|gb|EES36383.1| possible peptide deformylase [Staphylococcus epidermidis W23144]
          Length = 162

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL ++ +P+   +  +  L++++ + +Y  +   ++A QIGV   + +
Sbjct: 1   MTVKKLVKSTHPILNKMIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+     ++  +  INP + + S +     EG +S+P    +VKRS  ITV+  D N  
Sbjct: 61  IDM----EQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149
              + A   +A  + H +DHLNGI F   
Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145


>gi|308235345|ref|ZP_07666082.1| peptide deformylase [Gardnerella vaginalis ATCC 14018]
 gi|311114315|ref|YP_003985536.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
 gi|310945809|gb|ADP38513.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
          Length = 217

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 10/156 (6%)

Query: 6   LVIFPDPILRR--VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           +V   +P+LR+  V+   +   + +  LI  M   M    G+GLAA QIG+   + V++ 
Sbjct: 31  IVQAGEPVLRQRTVAYDGQLTRATLNKLISLMHSTMLDAPGVGLAAPQIGLGLAIAVVED 90

Query: 64  QDHAHRKNPM--------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
                  +P           INP           + EGCLS+  Y+A  +R   I   + 
Sbjct: 91  HVRDDADDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVAGYQAVRQRWLDIQATWQ 150

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           D + +       G  A   QHE DHL G L+ID   
Sbjct: 151 DEDGKQHSERLHGWPARIFQHETDHLRGELYIDRAE 186


>gi|104773846|ref|YP_618826.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|122983972|sp|Q1GAR4|DEF_LACDA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|103422927|emb|CAI97589.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 184

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++ +   ++     L D+M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G    +  + + D         V++NP+II+ S   +     EGCLS+       V R
Sbjct: 65  QVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +TV Y   + + + I   G  A    HE+DHLNG LF D +++ 
Sbjct: 125 PNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171


>gi|255082960|ref|XP_002504466.1| predicted protein [Micromonas sp. RCC299]
 gi|226519734|gb|ACO65724.1| predicted protein [Micromonas sp. RCC299]
          Length = 285

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 31/172 (18%)

Query: 4   KPLVIFPDPILRRVSR--PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +V    P+LR+++   P+++I+S  I  LI  M+ +M +  G+GLAA QIGV YR+ V
Sbjct: 65  REIVQAGTPVLRQMAEEIPLDRIDSATIQELIQEMISIMRNR-GVGLAAPQIGVPYRIFV 123

Query: 61  IDLQDHA-----------HRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           ++  +               + P    V INP +   S+    + EGCLS          
Sbjct: 124 MEDTEEGMSDVSKDDLVAQERAPFPAKVIINPTVTPVSNQSCAFFEGCLS---------- 173

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              + VR    + +     A G  A   QHE+DHL+G+L++D +       +
Sbjct: 174 ---VRVRGYGGDGKPVDFVAKGWQARIAQHEMDHLDGVLYVDRMDSRTFRRV 222


>gi|319892089|ref|YP_004148964.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161785|gb|ADV05328.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03]
 gi|323464802|gb|ADX76955.1| peptide deformylase 2 [Staphylococcus pseudintermedius ED99]
          Length = 183

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR+ ++ +E  +  +    + +M   + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLRQRAKEVEFPLTEEERQTLLDMQTFLKNSQDPEIAEKYQLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           A QI V  R+  + L D           +NPKI++ S  D +    EGCLS+  D    V
Sbjct: 63  APQINVPKRMFAVYLPDDGEGHSYDFAIVNPKIVSHSVQDAYLPTGEGCLSVDEDVPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   I ++  D +     +   G  A  +QHELDHLNG+LF DH+ 
Sbjct: 123 HRHYRIKLKGYDIDGNEINLRLKGYPAIVVQHELDHLNGVLFYDHID 169


>gi|300811352|ref|ZP_07091849.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123463|ref|YP_004033722.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|300497716|gb|EFK32741.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312280026|gb|ADQ60745.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 184

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++ +   ++     L D+M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G    +  + + D         V++NP+II+ S   +     EGCLS+       V R
Sbjct: 65  QVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLGEGEGCLSVDKVIDGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +TV Y   + + + I   G  A    HE+DHLNG LF D +++ 
Sbjct: 125 PNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171


>gi|116872445|ref|YP_849226.1| peptide deformylase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123466166|sp|A0AHG3|DEF_LISW6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116741323|emb|CAK20445.1| polypeptide deformylase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 183

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR V+  +   ++ +   L  +MLE + ++             G+G+AA Q
Sbjct: 6   DIVREGHPALREVASEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108
           + V  R++ I + D   R    V  NPKI + S   +     EGCLS+  +    V RS 
Sbjct: 66  LAVTKRILAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            +T+   D N     +      A  +QHE+DHLNGI+F DH+++ 
Sbjct: 126 RVTIDAFDENGIPLKLRFKDYPAIVVQHEIDHLNGIMFYDHINKE 170


>gi|325125510|gb|ADY84840.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 184

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++ +   ++     L D+M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHHLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G    +  + + D         V++NP+II+ S   +     EGCLS+       V R
Sbjct: 65  QVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +TV Y   + + + I   G  A    HE+DHLNG LF D +++ 
Sbjct: 125 PNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171


>gi|319649756|ref|ZP_08003909.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
 gi|317398510|gb|EFV79195.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
          Length = 183

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 17/165 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K ++    P LR+++  +    +++ + ++  M+E + ++             GIGLAA 
Sbjct: 5   KDIIRDGHPTLRKIAAEVNMPPSAEEIQILKEMMEYVKNSQDPELSAKYGLRAGIGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVKRS 107
           QI V  R++ + +  +          NPKII+ S    +    EGCLS+ +     V R 
Sbjct: 65  QINVSRRMIAVHVT-YNQDLYSYALFNPKIISHSVQLSYLAEGEGCLSVDESIPGFVPRY 123

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           A +TV+  D       +   GL A   QHE+DHLNGI+F DH+++
Sbjct: 124 AKVTVKGTDLQGNEVKLKLKGLPAIVFQHEIDHLNGIMFYDHINK 168


>gi|227877349|ref|ZP_03995420.1| peptide deformylase [Lactobacillus crispatus JV-V01]
 gi|256848717|ref|ZP_05554151.1| peptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|295692713|ref|YP_003601323.1| peptide deformylase [Lactobacillus crispatus ST1]
 gi|227863017|gb|EEJ70465.1| peptide deformylase [Lactobacillus crispatus JV-V01]
 gi|256714256|gb|EEU29243.1| peptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|295030819|emb|CBL50298.1| Peptide deformylase [Lactobacillus crispatus ST1]
          Length = 184

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++P+   ++     L D+M++ +  +             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + + D   +     V++NP+I++ S   +     EGCLS+ +     V R
Sbjct: 65  QVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|315148893|gb|EFT92909.1| peptide deformylase [Enterococcus faecalis TX4244]
          Length = 187

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML  + ++             G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101
           A Q+ +  R++ + +  +           V  NPKI++ S         EGCLS+  D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDWDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|205373016|ref|ZP_03225822.1| peptide deformylase [Bacillus coahuilensis m4-4]
          Length = 184

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 16/163 (9%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++    P LR V++ ++   + +    + ++LE + ++             GIG+AA Q
Sbjct: 6   DIIREGHPTLREVAKEVKIPPSLEDQETLKSLLEYVKNSQDPEKAATFNLRPGIGIAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108
           I V  R++ I + +           NP +I+ S +  +    EGCLS+  D    V R  
Sbjct: 66  IDVSKRMLAIRVPNEKGELIEEALFNPIVISHSVEQAYLTSGEGCLSVDRDVPGFVPRYR 125

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +TV+  D N Q + +   GL A   QHE+DHLNGI+F DH++
Sbjct: 126 KVTVKGFDINGQLKTLKLRGLPAIVFQHEIDHLNGIMFYDHIN 168


>gi|70726862|ref|YP_253776.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435]
 gi|68447586|dbj|BAE05170.1| formylmethionine deformylase [Staphylococcus haemolyticus JCSC1435]
          Length = 183

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  +  +   ++ +  N +  M + + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLRAKAEDVSLPLSDEDKNTLKEMRQFLINSQDDDIAKKYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADV 104
           A QI V  R++ + L D    +    + +NPKI++ S    +    EGCLS+  +    V
Sbjct: 63  APQINVSKRMIAVYLPDDGNGKAYDYMLVNPKIMSHSVQRAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++ +D +     +   G  A   QHE+DHLNG++F D++ 
Sbjct: 123 HRHFRVTIKALDIDGNEVKLRLKGYPAIIFQHEIDHLNGVMFYDYID 169


>gi|227893361|ref|ZP_04011166.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
 gi|227864776|gb|EEJ72197.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
          Length = 184

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++P+   ++     L  +M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRQVAKPLTFPLSDHYKKLAKDMMEYLINSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + + D   +      ++NP+II+ S   +     EGCLS+       V R
Sbjct: 65  QVGESVQMAALLVPDDEGKIIFKETYVNPEIISESVRQACLSEGEGCLSVDKVINGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|257420477|ref|ZP_05597467.1| polypeptide deformylase [Enterococcus faecalis X98]
 gi|257162301|gb|EEU92261.1| polypeptide deformylase [Enterococcus faecalis X98]
 gi|315154772|gb|EFT98788.1| peptide deformylase [Enterococcus faecalis TX0043]
          Length = 187

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML  + ++             G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101
           A Q+ +  R++ + +  +           V  NPKI++ S         EGCLS+  D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENEKPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|15596319|ref|NP_249813.1| peptide deformylase [Pseudomonas aeruginosa PAO1]
 gi|9947041|gb|AAG04511.1|AE004542_7 probable peptide deformylase [Pseudomonas aeruginosa PAO1]
          Length = 147

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           + + ++   D  L R+++P+      + ++  LID+M E M+   G+GLAA QIGV  +L
Sbjct: 1   MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           V+   +      +     P + +NP++    D+     EGCLS+P  R  V R   I  +
Sbjct: 61  VIFGFERSERYPDAPAVPPTILLNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120

Query: 114 YMDCN 118
            +D  
Sbjct: 121 GLDPQ 125


>gi|262199337|ref|YP_003270546.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365]
 gi|262082684|gb|ACY18653.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365]
          Length = 171

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 10/154 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVL 55
           M  + ++   +P L + S+ +E   +    LI ++ + + +       G G+AA QIGV 
Sbjct: 1   MPARTILQLGNPDLWQSSQRVESPAAA-QALIQDLADTLAAFREKNGFGRGIAAPQIGVH 59

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ +++            INP+++  S++  V  + C S+P     V R+A + V + 
Sbjct: 60  QRLIFVNVPGGFSGP----LINPQVVWSSEEQMVLWDDCFSLPGLMVRVARAAQVRVSFQ 115

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           + + + + I AD  L+  LQHE+DHL+GIL +  
Sbjct: 116 NQHGEARSIEADRALSELLQHEIDHLDGILAVQR 149


>gi|239636405|ref|ZP_04677407.1| peptide deformylase [Staphylococcus warneri L37603]
 gi|239597760|gb|EEQ80255.1| peptide deformylase [Staphylococcus warneri L37603]
          Length = 183

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ +   ++++    +  M E + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLREKAQELSFPLSNEDKETLKAMREFLINSQDDDIAKKYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           A QI V  R++ + L D    +    + +NPK++++S  + +    EGCLS+  +    V
Sbjct: 63  APQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   +T++  D +     +   G  A   QHE+DHLNGI+F DH+  
Sbjct: 123 HRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYDHIDD 170


>gi|73663007|ref|YP_301788.1| peptide deformylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495522|dbj|BAE18843.1| formylmethionine deformylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 183

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ +   ++ +  N +  M E + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKDVTLPLSEEDRNTLLAMREFLINSQDDEIATKYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           A QI +  +++ + L D    +   ++ +NPKI++ S  + +    EGCLS+  +    V
Sbjct: 63  APQINISKKMIAVYLPDDGNGKSYDLMLVNPKIMSHSIQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   ITV+  D + +   +   G  A  +QHE+DH+NGI+F DH+  
Sbjct: 123 HRKNRITVKATDIDGKEVKLRLKGYPAVVVQHEIDHINGIMFYDHIDP 170


>gi|313157220|gb|EFR56650.1| peptide deformylase [Alistipes sp. HGB5]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 7/145 (4%)

Query: 14  LRRVSRP--IEKINSDIMNLIDN-MLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAH 68
           LRR + P   E++ S+   L+   ML  +   + +G+G+AA Q+GV  RL+ +   D   
Sbjct: 84  LRRKAAPLGAEELRSEYFRLLKQGMLLTVRDPADEGVGIAAPQVGVSRRLIAVQRFDKPG 143

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQHQIIYAD 127
                 ++NP+I+  S   +  +EGCLS+P+    V R+  I +RY+D    +      +
Sbjct: 144 EPF-ECYVNPEIVGRSAARTAGREGCLSVPETSGTVLRADRIVLRYLDETTMRPVTDTVE 202

Query: 128 GLLATCLQHELDHLNGILFIDHLSR 152
           G  A   QHE+DHL+G+LFID + R
Sbjct: 203 GFTAVIFQHEIDHLDGVLFIDRMQR 227


>gi|325195568|emb|CCA28422.1| peptide deformylase putative [Albugo laibachii Nc14]
          Length = 98

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/96 (50%), Positives = 66/96 (68%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           MVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +   + A+GLLA 
Sbjct: 1   MVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAI 60

Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 61  CIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 96


>gi|219855695|ref|YP_002472817.1| hypothetical protein CKR_2352 [Clostridium kluyveri NBRC 12016]
 gi|219569419|dbj|BAH07403.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 180

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 16/166 (9%)

Query: 4   KPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K +V   + IL R +  +    + +    + +M+  + ++             G+GL+A 
Sbjct: 2   KDIVREGNDILHRPTLEVMVPPSEEDKETLTSMMNFLKNSQDSILSKKYKLRGGVGLSAN 61

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRS 107
           QIG+  R+ V+   D   +++    INPKII+ S         EGCLS+       V R 
Sbjct: 62  QIGLNKRMFVVYFTDEKGKEHEYTLINPKIISHSVSMIYLPPSEGCLSVDRVIDGFVPRY 121

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             I V+  +   +  I+  +G  +  +QHE+DHLNGI+F + +++ 
Sbjct: 122 ERIKVKGFNLEGEEIILKLNGYSSIVIQHEIDHLNGIMFYERINKE 167


>gi|228474307|ref|ZP_04059042.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|314936719|ref|ZP_07844066.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
 gi|228271666|gb|EEK13013.1| peptide deformylase [Staphylococcus hominis SK119]
 gi|313655338|gb|EFS19083.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80]
          Length = 183

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ +   ++ +  N + +M E + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKDVNLPLSEEDKNTLRDMREFLINSQDDEIAKKYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADV 104
           A QI +  +++ + L D    +    + +NPK+I+ S    +    EGCLS+  +    V
Sbjct: 63  APQINISKKMIAVYLPDDGEGKSYDYMLVNPKVISHSVQHAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R    T++  D +     +   G  A   QHE+DHLNGI+F D++ +
Sbjct: 123 HRHYRTTIKAYDIDGNEVKLRLKGYPAIVFQHEIDHLNGIMFYDYIDK 170


>gi|169404548|pdb|2OS1|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E.
           Faecalis And S. Pyogenes
          Length = 188

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML  + ++             G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101
           A Q+ +  R++ + +  +           V  NPKI++ S         EGCLS+  D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|227431846|ref|ZP_03913870.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352388|gb|EEJ42590.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 192

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 26/177 (14%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------D 43
           M  +     +    DP+LR+ +  +   ++ +   L  +M+E +  +             
Sbjct: 1   MTIRFTMDKITRDGDPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRP 60

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQ--EGCL 95
           G+GLAA Q+G   R+  I +                   NP II+ S         EGCL
Sbjct: 61  GVGLAAPQVGYSLRMSSILIPALDPEDTTDEPYFKGTIFNPVIISESVKRGALNVGEGCL 120

Query: 96  SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           S+  D    V R+  ITVRY D +   Q I      A   QHE+DHL+G L+ DH++
Sbjct: 121 SVDEDVPGFVPRAYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177


>gi|29377524|ref|NP_816678.1| peptide deformylase [Enterococcus faecalis V583]
 gi|227554489|ref|ZP_03984536.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|229547504|ref|ZP_04436229.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|255970735|ref|ZP_05421321.1| peptide deformylase [Enterococcus faecalis T1]
 gi|255974309|ref|ZP_05424895.1| peptide deformylase [Enterococcus faecalis T2]
 gi|256618174|ref|ZP_05475020.1| peptide deformylase [Enterococcus faecalis ATCC 4200]
 gi|256761103|ref|ZP_05501683.1| peptide deformylase [Enterococcus faecalis T3]
 gi|256854744|ref|ZP_05560108.1| polypeptide deformylase [Enterococcus faecalis T8]
 gi|256958348|ref|ZP_05562519.1| peptide deformylase [Enterococcus faecalis DS5]
 gi|256960417|ref|ZP_05564588.1| peptide deformylase [Enterococcus faecalis Merz96]
 gi|256962908|ref|ZP_05567079.1| peptide deformylase [Enterococcus faecalis HIP11704]
 gi|257078342|ref|ZP_05572703.1| peptide deformylase [Enterococcus faecalis JH1]
 gi|257080527|ref|ZP_05574888.1| peptide deformylase [Enterococcus faecalis E1Sol]
 gi|257083262|ref|ZP_05577623.1| peptide deformylase [Enterococcus faecalis Fly1]
 gi|257088182|ref|ZP_05582543.1| peptide deformylase [Enterococcus faecalis D6]
 gi|257417200|ref|ZP_05594194.1| peptide deformylase [Enterococcus faecalis AR01/DG]
 gi|257417917|ref|ZP_05594911.1| peptide deformylase [Enterococcus faecalis T11]
 gi|293383918|ref|ZP_06629820.1| peptide deformylase [Enterococcus faecalis R712]
 gi|293388312|ref|ZP_06632826.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294780198|ref|ZP_06745570.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|300861505|ref|ZP_07107589.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|307270427|ref|ZP_07551728.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|307273932|ref|ZP_07555144.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|307276707|ref|ZP_07557824.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|307278203|ref|ZP_07559285.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|307286413|ref|ZP_07566519.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|307292087|ref|ZP_07571954.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|312901914|ref|ZP_07761177.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|312906741|ref|ZP_07765741.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|312910721|ref|ZP_07769560.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|312953167|ref|ZP_07772014.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|39930870|sp|Q82ZJ0|DEF_ENTFA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|29344991|gb|AAO82748.1| polypeptide deformylase [Enterococcus faecalis V583]
 gi|227176399|gb|EEI57371.1| peptide deformylase [Enterococcus faecalis HH22]
 gi|229307346|gb|EEN73333.1| peptide deformylase [Enterococcus faecalis TX1322]
 gi|255961753|gb|EET94229.1| peptide deformylase [Enterococcus faecalis T1]
 gi|255967181|gb|EET97803.1| peptide deformylase [Enterococcus faecalis T2]
 gi|256597701|gb|EEU16877.1| peptide deformylase [Enterococcus faecalis ATCC 4200]
 gi|256682354|gb|EEU22049.1| peptide deformylase [Enterococcus faecalis T3]
 gi|256710304|gb|EEU25348.1| polypeptide deformylase [Enterococcus faecalis T8]
 gi|256948844|gb|EEU65476.1| peptide deformylase [Enterococcus faecalis DS5]
 gi|256950913|gb|EEU67545.1| peptide deformylase [Enterococcus faecalis Merz96]
 gi|256953404|gb|EEU70036.1| peptide deformylase [Enterococcus faecalis HIP11704]
 gi|256986372|gb|EEU73674.1| peptide deformylase [Enterococcus faecalis JH1]
 gi|256988557|gb|EEU75859.1| peptide deformylase [Enterococcus faecalis E1Sol]
 gi|256991292|gb|EEU78594.1| peptide deformylase [Enterococcus faecalis Fly1]
 gi|256996212|gb|EEU83514.1| peptide deformylase [Enterococcus faecalis D6]
 gi|257159028|gb|EEU88988.1| peptide deformylase [Enterococcus faecalis ARO1/DG]
 gi|257159745|gb|EEU89705.1| peptide deformylase [Enterococcus faecalis T11]
 gi|291078745|gb|EFE16109.1| peptide deformylase [Enterococcus faecalis R712]
 gi|291082322|gb|EFE19285.1| peptide deformylase [Enterococcus faecalis S613]
 gi|294452741|gb|EFG21171.1| peptide deformylase [Enterococcus faecalis PC1.1]
 gi|295114395|emb|CBL33032.1| peptide deformylase [Enterococcus sp. 7L76]
 gi|300848966|gb|EFK76719.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11]
 gi|306496869|gb|EFM66419.1| peptide deformylase [Enterococcus faecalis TX0411]
 gi|306502426|gb|EFM71699.1| peptide deformylase [Enterococcus faecalis TX0109]
 gi|306505192|gb|EFM74380.1| peptide deformylase [Enterococcus faecalis TX0860]
 gi|306506606|gb|EFM75759.1| peptide deformylase [Enterococcus faecalis TX2134]
 gi|306509411|gb|EFM78469.1| peptide deformylase [Enterococcus faecalis TX0855]
 gi|306513205|gb|EFM81836.1| peptide deformylase [Enterococcus faecalis TX4248]
 gi|310627389|gb|EFQ10672.1| peptide deformylase [Enterococcus faecalis DAPTO 512]
 gi|310628910|gb|EFQ12193.1| peptide deformylase [Enterococcus faecalis TX0102]
 gi|311288984|gb|EFQ67540.1| peptide deformylase [Enterococcus faecalis DAPTO 516]
 gi|311290981|gb|EFQ69537.1| peptide deformylase [Enterococcus faecalis TX0470]
 gi|315027683|gb|EFT39615.1| peptide deformylase [Enterococcus faecalis TX2137]
 gi|315028233|gb|EFT40165.1| peptide deformylase [Enterococcus faecalis TX4000]
 gi|315031247|gb|EFT43179.1| peptide deformylase [Enterococcus faecalis TX0017]
 gi|315036534|gb|EFT48466.1| peptide deformylase [Enterococcus faecalis TX0027]
 gi|315143298|gb|EFT87314.1| peptide deformylase [Enterococcus faecalis TX2141]
 gi|315149069|gb|EFT93085.1| peptide deformylase [Enterococcus faecalis TX0012]
 gi|315152916|gb|EFT96932.1| peptide deformylase [Enterococcus faecalis TX0031]
 gi|315157489|gb|EFU01506.1| peptide deformylase [Enterococcus faecalis TX0312]
 gi|315164500|gb|EFU08517.1| peptide deformylase [Enterococcus faecalis TX1302]
 gi|315167177|gb|EFU11194.1| peptide deformylase [Enterococcus faecalis TX1341]
 gi|315171029|gb|EFU15046.1| peptide deformylase [Enterococcus faecalis TX1342]
 gi|315173457|gb|EFU17474.1| peptide deformylase [Enterococcus faecalis TX1346]
 gi|315573357|gb|EFU85548.1| peptide deformylase [Enterococcus faecalis TX0309B]
 gi|315581211|gb|EFU93402.1| peptide deformylase [Enterococcus faecalis TX0309A]
 gi|323479000|gb|ADX78439.1| peptide deformylase [Enterococcus faecalis 62]
 gi|327536189|gb|AEA95023.1| peptide deformylase [Enterococcus faecalis OG1RF]
          Length = 187

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML  + ++             G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101
           A Q+ +  R++ + +  +           V  NPKI++ S         EGCLS+  D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|332638588|ref|ZP_08417451.1| peptide deformylase [Weissella cibaria KACC 11862]
          Length = 195

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 28/177 (15%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K +V   DP+LR+ +  +   ++ ++     NM+E +  +             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRQQAAKVTFPLSDEVKEATKNMMEYLVVSQNEEENEKCGLRPGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRKN------------PMVFINPKIITFSDDFSV--YQEGCLS 96
           Q+G+  +   I + D                       NP I   S   +     EGCLS
Sbjct: 65  QVGISQQFSSILIPDEDVDDTDIDEDAAPTYFFKGTIYNPVITRQSVKQTALSMGEGCLS 124

Query: 97  IP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  D    V+R+  ITV+Y D N   Q +  +G  A   QHE+DHL+G L+ DH+S+
Sbjct: 125 VDEDIPGYVERAYRITVKYQDENGDAQELKLEGYPAIVFQHEIDHLHGTLYYDHISK 181


>gi|145596781|ref|YP_001161078.1| formylmethionine deformylase [Salinispora tropica CNB-440]
 gi|145306118|gb|ABP56700.1| formylmethionine deformylase [Salinispora tropica CNB-440]
          Length = 187

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 6/153 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61
            +P+V  P  +L R  R ++      + L  +++  M  + G +GLAA QIGV  R+  +
Sbjct: 23  VRPVVSAPAAVLSRAGRDVDPTAEQTVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAV 82

Query: 62  DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MDC 117
           D+  H          V  N  ++  S  +   +EGC+S+PD   DVKR+  + V   +  
Sbjct: 83  DVTGHPKASTGHGAFVLCNAVVVEAS-RWKAGREGCMSVPDLTGDVKRAGRLVVEGDLPG 141

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             +   +  D   A  LQHE+DH  G+LF+D +
Sbjct: 142 TGKTVRLVTDAFEARALQHEIDHCAGLLFLDRV 174


>gi|227535207|ref|ZP_03965256.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187091|gb|EEI67158.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 181

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 17/167 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50
           K +      +LR  ++P+   ++ +   L  +M+            E  +   G+GLAA 
Sbjct: 2   KDITRDGAKVLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAP 61

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106
           Q+G    +  + +  D        V INP+II+ S   +     EGCLS+  D    V R
Sbjct: 62  QVGQSKAMAAVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVR 121

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +  IT+ Y +   +H+ I      A   QHE+DHLNG+LF DH+++ 
Sbjct: 122 ADRITISYQNEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINKE 168


>gi|229548080|ref|ZP_04436805.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|257091309|ref|ZP_05585670.1| peptide deformylase [Enterococcus faecalis CH188]
 gi|312905368|ref|ZP_07764483.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|229306766|gb|EEN72762.1| peptide deformylase [Enterococcus faecalis ATCC 29200]
 gi|257000121|gb|EEU86641.1| peptide deformylase [Enterococcus faecalis CH188]
 gi|310631392|gb|EFQ14675.1| peptide deformylase [Enterococcus faecalis TX0635]
 gi|315162546|gb|EFU06563.1| peptide deformylase [Enterococcus faecalis TX0645]
 gi|315578554|gb|EFU90745.1| peptide deformylase [Enterococcus faecalis TX0630]
          Length = 187

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML  + ++             G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITKEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101
           A Q+ +  R++ + +  +           V  NPKI++ S         EGCLS+  D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|296111965|ref|YP_003622347.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154]
 gi|295833497|gb|ADG41378.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154]
          Length = 192

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 26/177 (14%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43
           M  +     +    DP+LR++++P+   ++ +   L  +M+            E      
Sbjct: 1   MTIRFTMDKITRDGDPVLRQIAQPVPFPLSEEHAQLAKDMMTYLVISQDATQNETYGLRP 60

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQ--EGCL 95
           G+GLAA Q+G   ++  + +      ++           NP II+ S         EGCL
Sbjct: 61  GVGLAAPQVGYSLQMAAVLVPSLDPHESDDTPYFKGTIFNPTIISESVKRGALDVGEGCL 120

Query: 96  SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           S+  D    V R+  +TVRY D     +II      A   QHE+DHL+G L+ DH+ 
Sbjct: 121 SVDEDVPGFVPRANRVTVRYQDEIGDTKIIKLRDYPAIVFQHEIDHLHGHLYYDHID 177


>gi|116618440|ref|YP_818811.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116097287|gb|ABJ62438.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 192

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 26/177 (14%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------D 43
           M  +     +    DP+LR+ +  +   ++ +   L  +M+E +  +             
Sbjct: 1   MTIRFTMDKITRDGDPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRP 60

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQ--EGCL 95
           G+GLAA Q+G   R+  I +                   NP II+ S         EGCL
Sbjct: 61  GVGLAAPQVGYSLRMSSILIPALDPEDTIDEPYFKGTIFNPVIISESVKRGALNVGEGCL 120

Query: 96  SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           S+  D    V R+  ITVRY D +   Q I      A   QHE+DHL+G L+ DH++
Sbjct: 121 SVDEDVPGFVPRAYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177


>gi|116494793|ref|YP_806527.1| peptide deformylase [Lactobacillus casei ATCC 334]
 gi|191638306|ref|YP_001987472.1| peptide deformylase [Lactobacillus casei BL23]
 gi|239631609|ref|ZP_04674640.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066358|ref|YP_003788381.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang]
 gi|122263789|sp|Q039N7|DEF_LACC3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238693032|sp|B3WE13|DEF_LACCB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116104943|gb|ABJ70085.1| peptide deformylase [Lactobacillus casei ATCC 334]
 gi|190712608|emb|CAQ66614.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus
           casei BL23]
 gi|239526074|gb|EEQ65075.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438765|gb|ADK18531.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang]
 gi|327382333|gb|AEA53809.1| Peptide deformylase [Lactobacillus casei LC2W]
 gi|327385534|gb|AEA57008.1| Peptide deformylase [Lactobacillus casei BD-II]
          Length = 184

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 17/167 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50
           K +      +LR  ++P+   ++ +   L  +M+            E  +   G+GLAA 
Sbjct: 5   KDITRDGAKVLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106
           Q+G    +  + +  D        V INP+II+ S   +     EGCLS+  D    V R
Sbjct: 65  QVGQSKAMAAVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +  IT+ Y +   +H+ I      A   QHE+DHLNG+LF DH+++ 
Sbjct: 125 ADRITISYQNEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINKE 171


>gi|330833559|ref|YP_004402384.1| polypeptide deformylase [Streptococcus suis ST3]
 gi|329307782|gb|AEB82198.1| polypeptide deformylase [Streptococcus suis ST3]
          Length = 204

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++    P LR+V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFSDDFSVYQ--EGCLSIP-D 99
           I V  R++ + +        NP         V  NPKI+  S   +  +  EGCLS+  +
Sbjct: 78  IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            +  V R A +TV YMD N +   I   G  A  +QHE+DHLNGI+F D +       + 
Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGIMFYDRIDPEHPFAVK 197

Query: 160 KKM 162
           + M
Sbjct: 198 EGM 200


>gi|332518959|ref|ZP_08395426.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4]
 gi|332044807|gb|EGI81000.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4]
          Length = 215

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 8/147 (5%)

Query: 13  ILRRVSRPIEKINSD--IMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAH 68
           +LR  S  ++  ++D  +   I  +   +  +   G+G+AA Q+GVL  ++ +   D   
Sbjct: 65  LLRSKSAYVKPDSTDVVLNTFIKRLYATVRDSISLGVGIAAPQVGVLKNVIWVQRFDKDE 124

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV--KRSAFITVRYMDCNAQHQIIYA 126
                V++NPKII++S +    +EGCLSIP+ R DV   RS  + + Y   N +H I   
Sbjct: 125 FPF-EVYLNPKIISYSQEKQTRKEGCLSIPN-RTDVLNNRSKIVKIEYDKINGEHIIETI 182

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRL 153
               A   QHE+DHLNGIL++DHL + 
Sbjct: 183 TDFTAIIFQHEIDHLNGILYLDHLEKE 209


>gi|224476206|ref|YP_002633812.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420813|emb|CAL27627.1| type II peptide deformylase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 184

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 17/169 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ +E  ++++  N I  M E + ++             G+G+A
Sbjct: 3   TMKDIIRDGHPTLREKAKEVEFPLSNEDRNKIQEMHEFLVNSQDDEIAKKYGLRSGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           A Q+ +  R++ + L D    +   ++ INPKI+++S  + +    EGCLS+  D    V
Sbjct: 63  APQLNISKRMLAVHLPDDGEGKSYELMLINPKIVSYSVQEAYLPTGEGCLSVDEDIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            R   +TV+  D +     +   G +A  +QHE+DHL+GI+F DH+ + 
Sbjct: 123 HRHNRVTVKAKDIDGNDINLRLKGYIAIVVQHEIDHLDGIMFYDHIDKE 171


>gi|301103913|ref|XP_002901042.1| peptide deformylase, putative [Phytophthora infestans T30-4]
 gi|262101380|gb|EEY59432.1| peptide deformylase, putative [Phytophthora infestans T30-4]
          Length = 210

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 6   LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61
           LV   +  LRRVS+ +  +    +  L++++ + +    G+G+AA Q+    R+ ++   
Sbjct: 3   LVFLGNSALRRVSKSVADVRAPAVRRLLEDLDKEVRLEAGVGIAAPQLAHNLRMFLMIKD 62

Query: 62  --DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             + +D   +      +NPKI+  S       EGCLS+P Y+  ++R+  I V+Y D   
Sbjct: 63  MPENEDDLSKLEYQEVLNPKIVAMSKSSKRDFEGCLSVPGYQGIIERAEEIRVQYQDAEG 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +          A   QHELDHLNG++++D L 
Sbjct: 123 RKIQETLTDFPARIFQHELDHLNGVMYLDRLE 154


>gi|91092264|ref|XP_967363.1| PREDICTED: similar to N-formylmethionylaminoacyl-tRNA deformylase,
           putative [Tribolium castaneum]
 gi|270001218|gb|EEZ97665.1| hypothetical protein TcasGA2_TC016210 [Tribolium castaneum]
          Length = 223

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 19/165 (11%)

Query: 6   LVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +V   DP LR VS  +   +     +I  LI+ M  VM + + +GL+A Q+GV  +L ++
Sbjct: 35  VVQIGDPTLRTVS-DVIPRDLIKLPEIKFLINRMKNVMKNHNSVGLSAPQVGVPLQLFLV 93

Query: 62  DLQ-----DHAHRKNPM---------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           +       +++ ++  +         V INP+I         + E C S+  + A+V R 
Sbjct: 94  ECNAKHLNEYSPQEQKVKEMKVVPFKVVINPQIKITDYTKLTFVESCASVKGFHAEVPRY 153

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + +   D   Q   +   G  A  +QHE+DHLNG ++ D + R
Sbjct: 154 KSLKLEAFDEENQKFEMELTGWPARIVQHEVDHLNGKIYTDIMDR 198


>gi|222150958|ref|YP_002560111.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402]
 gi|254767593|sp|B9EB04|DEF_MACCJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|222120080|dbj|BAH17415.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402]
          Length = 184

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 17/176 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  +  +   ++++   LID+MLE +  +             G+G+A
Sbjct: 3   TMKDIIRDGHPTLRAKAEEVPLPLSTEDRQLIDDMLEFLKMSQDEEQSRKYQLRSGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMV-FINPKIITFSDDFSVYQ--EGCLSIPD-YRADV 104
           A Q+    R++VI   D           INPKII+ S + S     EGCLS+ +     V
Sbjct: 63  APQLNHKKRMLVIHFYDEKKGDYVTHQLINPKIISHSVEKSYLPTGEGCLSVDEAVPGIV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            R A ITV+    + +   +      A   QHE+DHLNG++F DH+ +     + K
Sbjct: 123 HRYARITVKAYTPDGEEVKLRLKDFSAIVAQHEIDHLNGVMFYDHIDKADPMKVQK 178


>gi|256850954|ref|ZP_05556343.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661168|ref|ZP_05862082.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|282934131|ref|ZP_06339409.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|297205836|ref|ZP_06923231.1| peptide deformylase [Lactobacillus jensenii JV-V16]
 gi|256616016|gb|EEU21204.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260548105|gb|EEX24081.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|281301745|gb|EFA94011.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|297148962|gb|EFH29260.1| peptide deformylase [Lactobacillus jensenii JV-V16]
          Length = 184

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LRRV+  +   ++     L D+M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRRVADQLTFPLSDHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + +  D         F+NPKII+ S         EGCLS+       V R
Sbjct: 65  QVGEGVQMASLLVPNDKGEIIFKETFVNPKIISESVRQVCLSEGEGCLSVDKVIDGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +T++Y   + + + I   G  A    HE+DHLNG LF D +++
Sbjct: 125 PNKLTIKYFTVDGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRINK 170


>gi|227529038|ref|ZP_03959087.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
 gi|227351050|gb|EEJ41341.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
          Length = 190

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 20/168 (11%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+ +  +   ++ +        +E +  +             G+GLAA 
Sbjct: 8   KDIVRDGDPVLRKRAAKVTFPLSEEDQEFAKRAMEYLEVSQDPELCKKYKLRAGVGLAAP 67

Query: 51  QIGVLYRLVVIDL----QDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIP-DYRAD 103
           Q+G+  ++  + +    +D        V INP I++ S  +      EGCLS+  D    
Sbjct: 68  QVGISKQMAAVLVPSLNEDDDQPSFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 127

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R   IT+RY D   +   +      A   QHE+DHL+G+LF DH++
Sbjct: 128 VPRHDRITLRYQDVKGETHQLRLKNYPAIVCQHEIDHLHGVLFYDHIN 175


>gi|239636306|ref|ZP_04677308.1| polypeptide deformylase [Staphylococcus warneri L37603]
 gi|239597661|gb|EEQ80156.1| polypeptide deformylase [Staphylococcus warneri L37603]
          Length = 162

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 7/167 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PI  + +  ++  +  +   + ++ + +Y+ +G  L+A QIG+  ++ +
Sbjct: 1   MSVKKLVKSEHPIFNQPANSVKHFDDQLKQTLIDVEDSLYALEGSALSANQIGINQQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      +  +  INPKI   S++     EG +S+P+   +V+RS  I V   D N  
Sbjct: 61  VDM----EMEGLLQLINPKIKKQSEETITDLEGSVSLPNVFGEVERSKMIVVESNDVNGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + A   +A  + H +D LNGI F +     KR +  ++M    +
Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTEKA---KRILSEEEMEAYFE 160


>gi|218188450|gb|EEC70877.1| hypothetical protein OsI_02402 [Oryza sativa Indica Group]
 gi|222618667|gb|EEE54799.1| hypothetical protein OsJ_02204 [Oryza sativa Japonica Group]
          Length = 155

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 14/132 (10%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVI-------------DLQDHAHRK-NPMVFINPKI 80
           M+ VM    G+GLAA QIGV  +++V+             D++    R  + +V INPK+
Sbjct: 1   MVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKL 60

Query: 81  ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140
            T S   +++ EGCLS+  YRA V+R   + V  +D N +   + A G  A  LQHE DH
Sbjct: 61  KTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDH 120

Query: 141 LNGILFIDHLSR 152
           L G L++D +  
Sbjct: 121 LEGTLYVDTMVP 132


>gi|146319598|ref|YP_001199310.1| peptide deformylase [Streptococcus suis 05ZYH33]
 gi|146321796|ref|YP_001201507.1| peptide deformylase [Streptococcus suis 98HAH33]
 gi|253752596|ref|YP_003025737.1| polypeptide deformylase [Streptococcus suis SC84]
 gi|253754422|ref|YP_003027563.1| polypeptide deformylase [Streptococcus suis P1/7]
 gi|253756356|ref|YP_003029496.1| polypeptide deformylase [Streptococcus suis BM407]
 gi|158514139|sp|A4VXS1|DEF_STRSY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158514157|sp|A4W418|DEF_STRS2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145690404|gb|ABP90910.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33]
 gi|145692602|gb|ABP93107.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33]
 gi|251816885|emb|CAZ52534.1| polypeptide deformylase [Streptococcus suis SC84]
 gi|251818820|emb|CAZ56662.1| polypeptide deformylase [Streptococcus suis BM407]
 gi|251820668|emb|CAR47430.1| polypeptide deformylase [Streptococcus suis P1/7]
 gi|292559212|gb|ADE32213.1| Formylmethionine deformylase [Streptococcus suis GZ1]
 gi|319759011|gb|ADV70953.1| peptide deformylase [Streptococcus suis JS14]
          Length = 204

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++    P LR+V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFSDDFSVYQ--EGCLSIP-D 99
           I V  R++ + +        NP         V  NPKI+  S   +  +  EGCLS+  +
Sbjct: 78  IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVLYNPKIVAHSVQEAAMEGGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            +  V R A +TV YMD N +   I   G  A  +QHE+DHLNG++F D +       + 
Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGVMFYDRIDPEHPFAVK 197

Query: 160 KKM 162
           + M
Sbjct: 198 EGM 200


>gi|116629817|ref|YP_814989.1| peptide deformylase [Lactobacillus gasseri ATCC 33323]
 gi|282851676|ref|ZP_06261041.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311110541|ref|ZP_07711938.1| peptide deformylase [Lactobacillus gasseri MV-22]
 gi|122273245|sp|Q042S1|DEF_LACGA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116095399|gb|ABJ60551.1| peptide deformylase [Lactobacillus gasseri ATCC 33323]
 gi|282557644|gb|EFB63241.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311065695|gb|EFQ46035.1| peptide deformylase [Lactobacillus gasseri MV-22]
          Length = 184

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +    +P+LR+V++P+   +  +   L D M++ + ++             G+GLAA Q
Sbjct: 6   DITRDGNPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107
           +G   ++  + +  D        VF+NPKII+ S   +     EGCLS+  D    V R 
Sbjct: 66  VGKSIQMAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRP 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + + Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|89097400|ref|ZP_01170289.1| peptide deformylase [Bacillus sp. NRRL B-14911]
 gi|89087696|gb|EAR66808.1| peptide deformylase [Bacillus sp. NRRL B-14911]
          Length = 192

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K +V   DPILR+ +  +   +N +   +++ M+E + ++             G+GL+A 
Sbjct: 12  KDIVREGDPILRQKTAEVAVPLNQEDHVIMEMMMEYLKNSQDPELAYKYQLRPGVGLSAN 71

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRS 107
           QIG   R+     +D       +   NPKII+ S       EG  CLS+  + +  V R 
Sbjct: 72  QIGEDKRMFAAFFRDEKGEVKELRVFNPKIISHSAAMVYLPEGEGCLSVDREVKGYVPRY 131

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             I ++Y D   +   +   G+ +  +QHE+DHLNGI+F D +++ 
Sbjct: 132 ERIKIKYSDEKGEQVEMRLKGIASVIVQHEIDHLNGIMFYDRINKE 177


>gi|300361479|ref|ZP_07057656.1| peptide deformylase [Lactobacillus gasseri JV-V03]
 gi|300354098|gb|EFJ69969.1| peptide deformylase [Lactobacillus gasseri JV-V03]
          Length = 184

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +    +P+LR+V++P+   +  +   L D M++ + ++             G+GLAA Q
Sbjct: 6   DITRDGNPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107
           +G   ++  + +  D        VF+NPKI++ S   +     EGCLS+  D    V R 
Sbjct: 66  VGKSIQMAALLVPNDKGEIIFKEVFVNPKILSESVRKACLAEGEGCLSVDKDIEGYVPRP 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + + Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|223933744|ref|ZP_03625717.1| peptide deformylase [Streptococcus suis 89/1591]
 gi|223897586|gb|EEF63974.1| peptide deformylase [Streptococcus suis 89/1591]
          Length = 204

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++    P LR+V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFSDDFSVYQ--EGCLSIP-D 99
           I V  R++ + +        NP         V  NPKI+  S   +  +  EGCLS+  +
Sbjct: 78  IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            +  V R A +TV YMD N +   I   G  A  +QHE+DHLNG++F D +       + 
Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGVMFYDRIDPEHPFAVK 197

Query: 160 KKM 162
           + M
Sbjct: 198 EGM 200


>gi|329571126|gb|EGG52832.1| peptide deformylase [Enterococcus faecalis TX1467]
          Length = 187

 Score =  133 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML  + ++             G+GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101
           A Q+ +  R++ + +  +           V  NPKI++ S         EGCLS+  D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHVKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|163751756|ref|ZP_02158973.1| peptide deformylase [Shewanella benthica KT99]
 gi|161328320|gb|EDP99480.1| peptide deformylase [Shewanella benthica KT99]
          Length = 114

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 72/115 (62%), Gaps = 3/115 (2%)

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +G  + ++VIDL +   R  P V INP+I+    DF + +EGCLSIP YRA V RS  +T
Sbjct: 3   VGSQHAILVIDLSE--ERDQPQVLINPEIVATEGDF-IGEEGCLSIPGYRAKVARSEQVT 59

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           V+ +D   +   I  D  LA  LQHE+DHL GI+F DHLS+LK+ +  KK+ K  
Sbjct: 60  VKALDRTGKPFDIETDTFLAIVLQHEIDHLQGIVFTDHLSKLKQQIALKKVKKYA 114


>gi|199598173|ref|ZP_03211595.1| peptide deformylase [Lactobacillus rhamnosus HN001]
 gi|229552108|ref|ZP_04440833.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1]
 gi|258508310|ref|YP_003171061.1| peptide deformylase [Lactobacillus rhamnosus GG]
 gi|258539523|ref|YP_003174022.1| peptide deformylase [Lactobacillus rhamnosus Lc 705]
 gi|199590934|gb|EDY99018.1| peptide deformylase [Lactobacillus rhamnosus HN001]
 gi|229314541|gb|EEN80514.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1]
 gi|257148237|emb|CAR87210.1| Peptide deformylase [Lactobacillus rhamnosus GG]
 gi|257151199|emb|CAR90171.1| Peptide deformylase [Lactobacillus rhamnosus Lc 705]
 gi|259649627|dbj|BAI41789.1| peptide deformylase [Lactobacillus rhamnosus GG]
 gi|328462751|gb|EGF34641.1| peptide deformylase [Lactobacillus rhamnosus MTCC 5462]
          Length = 184

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 17/167 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50
           K +      +LR  ++P+   ++ +   L  +M+            E  +   G+GLAA 
Sbjct: 5   KDITRDGAKVLRERAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106
           Q+G    +  + +  D+       V INP+II+ S   +     EGCLS+  D    V R
Sbjct: 65  QVGQSKAMAAVLVPGDNDEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +  IT+ Y +   +H+ +      A   QHE+DHLNG+LF DH+++ 
Sbjct: 125 ADRITIAYQNEAGEHKKVRLKNYPAIVCQHEIDHLNGVLFYDHINKE 171


>gi|116513853|ref|YP_812759.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|122275377|sp|Q04B51|DEF_LACDB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116093168|gb|ABJ58321.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 184

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LR+V++ +   ++     L D+M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G    +  + + D         V++NP+II+ S   +     EGCLS+       V R
Sbjct: 65  QVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              +TV Y   + + + I   G  A    HE+DHLNG LF D +++ 
Sbjct: 125 PNKVTVHYWTVDGEEKAIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171


>gi|259046789|ref|ZP_05737190.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
 gi|259036557|gb|EEW37812.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
          Length = 186

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 18/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K +V+   P LR+ +  +   ++ +   L   MLE ++++             G+GLA
Sbjct: 3   TMKDIVLEGHPALRKRAEKLTFPLSPEHQELAKEMLEFLHNSQNPEIAEKYGLRAGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSV--YQEGCLSI-PDYRAD 103
           A Q+G   +++ + +      +  +  V+INP+I+  S   +     EGCLS+  +    
Sbjct: 63  APQLGKSIQMIALLVPGFEEEEAILDEVWINPRIMRESVKKACLKDGEGCLSVNREVPGI 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           V R   ITV+Y D N    +   +   A  +QHE+DHLNG++F DH++
Sbjct: 123 VLRPERITVKYQDVNGDEFVRTLNDYEAIVVQHEIDHLNGVMFYDHIN 170


>gi|223043863|ref|ZP_03613905.1| peptide deformylase [Staphylococcus capitis SK14]
 gi|222442767|gb|EEE48870.1| peptide deformylase [Staphylococcus capitis SK14]
          Length = 183

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ +   ++ +    +  M E + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKDLSFPLSEEDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           A QI V  R++ + L D    +    + +NPK++++S  + +    EGCLS+  +    V
Sbjct: 63  APQIDVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNG++F D++ 
Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYID 169


>gi|300778831|ref|ZP_07088689.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
 gi|300504341|gb|EFK35481.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
          Length = 211

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 2/151 (1%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQDHAHR 69
              L  +S   + ++ +I  L+  M E + STDG +G+AA Q+G+  +++ +   D    
Sbjct: 48  HKTLLNISSEADPLDPNIAVLVKRMRESLLSTDGGVGIAAPQVGINRKIIWVQRFDKEGA 107

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
                FINP I+  SD  ++  EG LSIPD+R    RS  I + Y+D   Q      +G 
Sbjct: 108 P-LEYFINPVIVWRSDLQNLGPEGDLSIPDFRDQFYRSKVIQLEYVDLKGQKYSEIVEGF 166

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A   QHE+DHL GIL  D   + K D   K
Sbjct: 167 TAVIFQHEIDHLFGILISDKKEKEKNDSYKK 197


>gi|326803937|ref|YP_004321755.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650536|gb|AEA00719.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 192

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +    +P+L R +  I   +N        +M+E +Y++             G+GLAA Q
Sbjct: 6   DITRDGNPVLHREADTITFPLNEAQKQAAHDMMEYLYNSQDEEKGPELGLRAGVGLAAPQ 65

Query: 52  IGVLYRLV------VIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRA 102
           +G+  +++      + D           V +NPKII+ S +       EGCLS+ D    
Sbjct: 66  VGIGEKMIALLVPNIEDPDSDEEIILEGVMVNPKIISHSVEKVCLREGEGCLSVDDDVSG 125

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            V R A IT+ Y D    H      G  A  LQHE+DHL+G L+ + +++
Sbjct: 126 YVPRYARITITYDDLEGNHFKKRFKGYPAIVLQHEIDHLDGHLYYERINK 175


>gi|323340641|ref|ZP_08080893.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
 gi|323091764|gb|EFZ34384.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
          Length = 198

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 18/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++    P LR  +  I   ++ + + L  +++E + ++             G+GLAA Q
Sbjct: 20  DIIREGHPTLRARAEKIAFPLSDEDLKLAHDLMEFLENSQDEKIAKKYKLRAGVGLAAPQ 79

Query: 52  IGVLYRLVVIDLQDHAHRKN--PMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106
           +    R+  + + D   +      V +NP I++ S   +     EGCLS+  +    V R
Sbjct: 80  VDASKRITAVLVPDEEGKPPFFKHVLVNPTILSESVQMAALSEGEGCLSVDREVPGYVPR 139

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              I +R+ D +    +       A  +QHE+DHLNGI+F DH++
Sbjct: 140 HEKIKLRWYDLDGNEHVERLRDYTAIVVQHEIDHLNGIMFYDHIN 184


>gi|238853448|ref|ZP_04643827.1| peptide deformylase [Lactobacillus gasseri 202-4]
 gi|238834020|gb|EEQ26278.1| peptide deformylase [Lactobacillus gasseri 202-4]
          Length = 184

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +    +P+LR+V+RP+   +  +   L D M++ + ++             G+GLAA Q
Sbjct: 6   DITRDGNPVLRQVARPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107
           +G   ++  + +  D        VF+NPKII+ S   +     EGCLS+  D    V R 
Sbjct: 66  VGKSIQMAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRP 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + + Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|283470302|emb|CAQ49513.1| peptide deformylase [Staphylococcus aureus subsp. aureus ST398]
          Length = 183

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR+ +  +E     +    +  M E + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLRQKAAELELPFTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104
           A QI +  R++ + + D    +    + +NPKI++ S  + +    EGCLS+ D     V
Sbjct: 63  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|116492920|ref|YP_804655.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745]
 gi|122265616|sp|Q03F09|DEF_PEDPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116103070|gb|ABJ68213.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745]
          Length = 184

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 17/166 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +    +P+LR+ +  +   ++   + + D M+E + ++             G+GLAA Q
Sbjct: 6   DITRDGNPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPAIAEKYHLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKN-PMVFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRS 107
           IG+  ++  + +    +  +     +NP I++ S   +  +EG  CLS+  D    V R 
Sbjct: 66  IGLSIQMASVLVPGPDNTIDLEETLVNPVIVSQSVQIAALEEGEGCLSVDKDVPGYVPRH 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             ITVRY   + + + I      A   QHE+DHL G LF DH+++ 
Sbjct: 126 DRITVRYQTLDGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINKE 171


>gi|314933288|ref|ZP_07840653.1| peptide deformylase [Staphylococcus caprae C87]
 gi|313653438|gb|EFS17195.1| peptide deformylase [Staphylococcus caprae C87]
          Length = 183

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ +   ++ +    + +M E + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKELSFPLSEEDKETLRSMREFLINSQDEETAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           A QI +  R++ + L D    +    + +NPK++++S  + +    EGCLS+  +    V
Sbjct: 63  APQIDLAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNG++F D++ 
Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYID 169


>gi|293376283|ref|ZP_06622524.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325842152|ref|ZP_08167617.1| peptide deformylase [Turicibacter sp. HGF1]
 gi|292645101|gb|EFF63170.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325489718|gb|EGC92076.1| peptide deformylase [Turicibacter sp. HGF1]
          Length = 184

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 16/169 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++    P L +V+  +   ++ + + L+ +ML+ + ++            + +GLA
Sbjct: 3   TMKDIIREGHPTLSKVASEVAIPLSKEDVQLMKDMLQFIINSQTPEVAKKYQLRESVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVK 105
           A Q+ +  R++ +  +D   +   +   NPKI+++S++  +    EGCLS+  +    V 
Sbjct: 63  APQLNLDKRIIAVHTEDEKGKLYSLALANPKIVSYSEEITYLPMGEGCLSVDREVEGFVP 122

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           R   ITV   +   +         ++   QHE+DHLNG LFIDH+   +
Sbjct: 123 RYRRITVEGYNLKGEKIKFRLRDYVSIVFQHEIDHLNGHLFIDHIDPKQ 171


>gi|315658596|ref|ZP_07911467.1| peptide deformylase [Staphylococcus lugdunensis M23590]
 gi|315496385|gb|EFU84709.1| peptide deformylase [Staphylococcus lugdunensis M23590]
          Length = 183

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ ++  ++ +    + +M E + ++             G+GLA
Sbjct: 3   TMKDIIKDGHPTLRAEAQDVDFPLSDEDKQTLKSMREFLINSQDDEIANRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADV 104
           A QI +  +++ + L D    R   ++ +NPK+I++S  ++     EGCLS+  +    V
Sbjct: 63  APQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVISYSVQYAYLPTGEGCLSVDKNIAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +TV+  D + +   +   G  A  +QHE+DHLNGI+F DH+ 
Sbjct: 123 HRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHID 169


>gi|262045875|ref|ZP_06018839.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
 gi|260573834|gb|EEX30390.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
          Length = 184

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   D +LR+V++P+   ++     L D+M++ +  +             G+GLAA 
Sbjct: 5   KDIVRDGDSVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + + D   +     V++NP+I++ S   +     EGCLS+ +     V R
Sbjct: 65  QVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170


>gi|289551097|ref|YP_003472001.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
 gi|289180629|gb|ADC87874.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01]
          Length = 183

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ ++  ++ +    + +M E + ++             G+GLA
Sbjct: 3   TMKDIIKDGHPTLRAEAQDVDFPLSDEDKQTLKSMREFLINSQDDEIANRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADV 104
           A QI +  +++ + L D    R   ++ +NPK++++S  ++     EGCLS+  +    V
Sbjct: 63  APQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVVSYSVQYAYLPTGEGCLSVDKNIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +TV+  D + +   +   G  A  +QHE+DHLNGI+F DH+ 
Sbjct: 123 HRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHID 169


>gi|254457085|ref|ZP_05070513.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
 gi|207085877|gb|EDZ63161.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
          Length = 278

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 4/165 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P P        +   N +I+++I ++ + + +     LAA QIG +Y ++VI
Sbjct: 1   MVRDIITYPTPPSVEYGTDVRVFNEEIISIIQDLKDTIEANSLEALAAFQIGAMYNIIVI 60

Query: 62  ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
              D+   A     +  INP+II+ S+  S  ++     P   A+V+R   +++ Y D N
Sbjct: 61  KKGDMSFVAGDDGFLELINPRIISCSEKISTVEKTAY-FPGLSANVERHNNVSIIYEDKN 119

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            +   + A G  A  LQ ++D+  G  FI+ LS+ ++ +  KK+ 
Sbjct: 120 FKQHNLKATGGEAILLQRKIDYTFGSSFINKLSKDEKKLFEKKLE 164


>gi|86140860|ref|ZP_01059419.1| putative polypeptide deformylase protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832802|gb|EAQ51251.1| putative polypeptide deformylase protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 219

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 13  ILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAH 68
           +LR  S  +     ++ +MNLID M   +  +   G G+AA Q+G+L R+  +   D   
Sbjct: 60  LLRTPSEAVTVDPKDTVLMNLIDRMYTTVRDSLSLGAGIAAPQVGILKRIAWVQRFDKEG 119

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV-KRSAFITVRYMDCNAQHQIIYAD 127
                V INP I  +S       EGCLSIP  R  +  R+  I V Y   +A H+I   +
Sbjct: 120 FPF-EVIINPVIKQYSKKKQDCPEGCLSIPGRRDTLSTRAYAILVEYDKPDASHEIEMVE 178

Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRD 156
              A   QHE+DHLNGIL++DHL +  +D
Sbjct: 179 DFTAVVFQHEIDHLNGILYLDHLKQEIKD 207


>gi|326438101|gb|EGD83671.1| hypothetical protein PTSG_12149 [Salpingoeca sp. ATCC 50818]
          Length = 214

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 18/164 (10%)

Query: 6   LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           ++    P+LR  + PI++    +  I NL+D++   +    G GL A QIG   +L V++
Sbjct: 16  IIEAGHPVLREKAAPIQRSDITDGSIRNLVDSLSARLREDKGFGLCAPQIGESLQLFVME 75

Query: 63  LQDH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           +                   R  P+  I    + +    S ++E CLSIP Y A V R  
Sbjct: 76  VTPDMIELETNFRDIKMLDMRPVPLTAIANPRLKYGKKMSTHRESCLSIPGYSAHVTRPV 135

Query: 109 FITVRYM-DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            I +  +         +   G  A  +QHE+DHLNG L+ D + 
Sbjct: 136 DIHLTGLCAVTGTDVSVALSGWTARIVQHEVDHLNGCLYTDKMD 179


>gi|322411042|gb|EFY01950.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 204

 Score =  131 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++   +P LR V++ +   ++ + + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           I V  R++ + + +      NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 78  IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D   +   I   G  A  +QHE+DH+NG++F D ++ 
Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190


>gi|163790334|ref|ZP_02184766.1| peptide deformylase [Carnobacterium sp. AT7]
 gi|159874405|gb|EDP68477.1| peptide deformylase [Carnobacterium sp. AT7]
          Length = 187

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 20/177 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             + ++    P LR V++ +   I+S+   L ++ML+ + ++             G+GLA
Sbjct: 3   TMEDIIKEGHPTLRMVAKELTLPISSEEKQLGEDMLQFLKNSQDPEIAEKYSLRAGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFSDDFS--VYQEGCLSIP-DYR 101
           A Q+ +  R++ + +       +      V +NPKII+ S   +     EGCLS+  +  
Sbjct: 63  APQLDISKRMIAVHIPGIEEGTDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
             V R + IT+ Y D   +   I      A  +QHE+DH+NGI+F DH+++ +   I
Sbjct: 123 GYVPRHSRITLTYFDLAGEAHKIRLKNYQAIVIQHEIDHINGIMFYDHINQEQPFKI 179


>gi|227903714|ref|ZP_04021519.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796]
 gi|227868601|gb|EEJ76022.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796]
          Length = 184

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LRRVS  +   ++     L D+M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + + D   +     +F+NP+II+ S   +     EGCLS+ +     V R
Sbjct: 65  QVGEGVKMAALLVPDDQGNIIFKDIFVNPEIISESVRQACLSEGEGCLSVDEVINGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +TV Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 125 PDKLTVHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170


>gi|159026645|emb|CAO86579.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 181

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 1   MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M     +    +PIL++ +  I+ + +SD  NLID+++  + +  G+G+AA Q+    RL
Sbjct: 13  MTQVLTITQLGNPILQQKAPEIDNLLDSDCQNLIDSLITTVQAAHGVGIAAPQVARSLRL 72

Query: 59  VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
            ++    +    +     P   INP+I+  S++     EGCLS+P++R  V R  +I V 
Sbjct: 73  FIVASGPNPRYPDAPIMSPTAMINPRILQVSEEMVKGWEGCLSVPNWRGFVPRHQWIEVS 132

Query: 114 YMDCNAQHQIIYADGLLATC 133
           Y   N +         +A  
Sbjct: 133 YYGRNGREIRQIFRDFVARI 152


>gi|251781679|ref|YP_002995981.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390308|dbj|BAH80767.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 204

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++   +P LR V++ +   ++ + + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           I V  R++ + + +      NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 78  IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D   +   I   G  A  +QHE+DH+NG++F D ++ 
Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190


>gi|70934701|ref|XP_738539.1| formylmethionine deformylase [Plasmodium chabaudi chabaudi]
 gi|56514841|emb|CAH86596.1| formylmethionine deformylase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 132

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 1/113 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-LQ 64
           +V++P+P+LR+ S  +   + ++ +L+  M + MY + GIGL+A Q+ +  R++V + L 
Sbjct: 20  IVMYPNPVLRQKSEEVLYFDDNLKDLVRRMFKTMYESKGIGLSAPQVNISKRIIVWNALY 79

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +    KN  VFINP II  S   +   EGCLS P+  A V+R A +++ Y D 
Sbjct: 80  EKRDEKNERVFINPSIIQESAVKNKLVEGCLSFPNIEAKVERPAIVSISYYDI 132


>gi|15924081|ref|NP_371615.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926677|ref|NP_374210.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315]
 gi|148267584|ref|YP_001246527.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393639|ref|YP_001316314.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979414|ref|YP_001441673.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316344|ref|ZP_04839557.1| peptide deformylase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005878|ref|ZP_05144479.2| peptide deformylase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795178|ref|ZP_05644157.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|258407113|ref|ZP_05680262.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|258421795|ref|ZP_05684716.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|258436159|ref|ZP_05689142.1| peptide deformylase [Staphylococcus aureus A9299]
 gi|258443352|ref|ZP_05691695.1| peptide deformylase [Staphylococcus aureus A8115]
 gi|258444962|ref|ZP_05693279.1| peptide deformylase [Staphylococcus aureus A6300]
 gi|258449863|ref|ZP_05697961.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224]
 gi|258454962|ref|ZP_05702925.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937]
 gi|269202702|ref|YP_003281971.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894118|ref|ZP_06302349.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|282928613|ref|ZP_06336210.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|295405895|ref|ZP_06815704.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|296276492|ref|ZP_06858999.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246365|ref|ZP_06930209.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|56749813|sp|P68825|DEF_STAAM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56749814|sp|P68826|DEF_STAAU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56749815|sp|P99077|DEF_STAAN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22219285|pdb|1LQW|A Chain A, Crystal Structure Of S.Aureus Peptide Deformylase
 gi|22219286|pdb|1LQW|B Chain B, Crystal Structure Of S.Aureus Peptide Deformylase
 gi|75766236|pdb|2AI9|A Chain A, S.Aureus Polypeptide Deformylase
 gi|75766237|pdb|2AI9|B Chain B, S.Aureus Polypeptide Deformylase
 gi|9965494|gb|AAG02249.1| peptide deformylase Pdf1 [Staphylococcus aureus]
 gi|13700892|dbj|BAB42188.1| pdf1 [Staphylococcus aureus subsp. aureus N315]
 gi|14246861|dbj|BAB57253.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|147740653|gb|ABQ48951.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946091|gb|ABR52027.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1]
 gi|156721549|dbj|BAF77966.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|257789150|gb|EEV27490.1| polypeptide deformylase [Staphylococcus aureus A9781]
 gi|257841268|gb|EEV65713.1| peptide deformylase [Staphylococcus aureus A9763]
 gi|257842128|gb|EEV66556.1| polypeptide deformylase [Staphylococcus aureus A9719]
 gi|257848848|gb|EEV72833.1| peptide deformylase [Staphylococcus aureus A9299]
 gi|257851442|gb|EEV75381.1| peptide deformylase [Staphylococcus aureus A8115]
 gi|257856084|gb|EEV79002.1| peptide deformylase [Staphylococcus aureus A6300]
 gi|257856783|gb|EEV79686.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224]
 gi|257862842|gb|EEV85607.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937]
 gi|262074992|gb|ACY10965.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282589652|gb|EFB94738.1| polypeptide deformylase [Staphylococcus aureus A10102]
 gi|282763604|gb|EFC03733.1| polypeptide deformylase [Staphylococcus aureus A8117]
 gi|285816772|gb|ADC37259.1| Peptide deformylase [Staphylococcus aureus 04-02981]
 gi|294969330|gb|EFG45350.1| polypeptide deformylase [Staphylococcus aureus A8819]
 gi|297176731|gb|EFH35991.1| polypeptide deformylase [Staphylococcus aureus A8796]
 gi|312829485|emb|CBX34327.1| peptide deformylase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130323|gb|EFT86310.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725200|gb|EGG61689.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172]
          Length = 183

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR+ +  +E  +  +    +  M E + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104
           A QI +  R++ + + D    +    + +NPKI++ S  + +    EGCLS+ D     V
Sbjct: 63  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|58337138|ref|YP_193723.1| peptide deformylase [Lactobacillus acidophilus NCFM]
 gi|58254455|gb|AAV42692.1| polypeptide deformylase Pdf [Lactobacillus acidophilus NCFM]
          Length = 191

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LRRVS  +   ++     L D+M+E + ++             G+GLAA 
Sbjct: 12  KDIVRDGDPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAP 71

Query: 51  QIGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + + D   +     +F+NP+II+ S   +     EGCLS+ +     V R
Sbjct: 72  QVGEGVKMAALLVPDDQGNIIFKDIFVNPEIISESVRQACLSEGEGCLSVDEVINGYVPR 131

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +TV Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 132 PDKLTVHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 177


>gi|37626151|gb|AAQ96527.1| hypothetical protein [Vibrio phage VP16T]
          Length = 137

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++    P L  ++  +     D+ +L+ +M   M +  GIGLA  Q+GVL R++V+    
Sbjct: 3   ILKDDAPELHAIAAEVPH-GEDVKDLVLDMTAAMTAAGGIGLAGNQVGVLKRIIVLRCPT 61

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                     INP I   +D      EGCLS P      KR   + V   D + Q   I 
Sbjct: 62  FKG-----CVINPIITRHTDGHVYSPEGCLSYPGKTVAKKRRNKVVVEGYDMDWQPITIA 116

Query: 126 ADGLLATCLQHELDHLNGILF 146
           A GL A CLQHE+DHLNG+  
Sbjct: 117 AKGLTAFCLQHEIDHLNGVTI 137


>gi|253731702|ref|ZP_04865867.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733674|ref|ZP_04867839.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130]
 gi|297208271|ref|ZP_06924701.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297591467|ref|ZP_06950105.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300912348|ref|ZP_07129791.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304381351|ref|ZP_07364004.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|253724516|gb|EES93245.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728374|gb|EES97103.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130]
 gi|296887010|gb|EFH25913.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297576353|gb|EFH95069.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300886594|gb|EFK81796.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304340334|gb|EFM06275.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438532|gb|ADQ77603.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60]
 gi|320141093|gb|EFW32940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143150|gb|EFW34940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 207

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR+ +  +E  +  +    +  M E + ++             G+GLA
Sbjct: 27  TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 86

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104
           A QI +  R++ + + D    +    + +NPKI++ S  + +    EGCLS+ D     V
Sbjct: 87  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 146

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 147 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 194


>gi|163840759|ref|YP_001625164.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
 gi|162954235|gb|ABY23750.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
          Length = 213

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 12/159 (7%)

Query: 5   PLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +V    P LR  ++P   +   S++   ++ M   M++  G GLAA Q+GV  +L V++
Sbjct: 27  EIVQAGHPTLRAPAQPWNGQLGASELEQFVELMRRCMHAAPGFGLAAPQLGVSLQLAVLE 86

Query: 63  --------LQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
                   +     R N      +NP+    +     + EGCLS+  ++A V R   I +
Sbjct: 87  DGHQVDSEIASIRERSNLPFFAMLNPRYQPLNSILVGFYEGCLSMSGWQAVVYRHHAIQL 146

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            Y   + +       G  A  +QHE DHL G+L++D   
Sbjct: 147 TYTTVDGELVQRELAGWPARIVQHETDHLAGMLYLDKAK 185


>gi|323466783|gb|ADX70470.1| Peptide deformylase [Lactobacillus helveticus H10]
          Length = 184

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 17/174 (9%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   D +LR+V++P+   ++     L ++M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDLVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + + D         V++NP+I++ S   +     EGCLS+       V R
Sbjct: 65  QVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              +T+ Y   + + + I      A    HE+DHLNG LF D +++ +   + +
Sbjct: 125 PDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKEPFALKE 178


>gi|319401586|gb|EFV89796.1| peptide deformylase [Staphylococcus epidermidis FRI909]
          Length = 183

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ +   ++++    +  M E + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           A QI    R++ + L D    +    + +NPKI+++S  + +    EGCLS+  +    V
Sbjct: 63  APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNGI+F D++ 
Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169


>gi|323126471|gb|ADX23768.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 204

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++   +P LR V++ +   ++ + + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           I V  R++ + + +      NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 78  IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D   +   I   G  A  +QHE+DH+NG++F D ++ 
Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190


>gi|238855249|ref|ZP_04645568.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|260664609|ref|ZP_05865461.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|282932458|ref|ZP_06337883.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|313471931|ref|ZP_07812423.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|238832141|gb|EEQ24459.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|239529143|gb|EEQ68144.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|260561674|gb|EEX27646.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|281303407|gb|EFA95584.1| peptide deformylase [Lactobacillus jensenii 208-1]
          Length = 184

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +V   DP+LRRV+  +   ++     L D+M+E + ++             G+GLAA 
Sbjct: 5   KDIVRDGDPVLRRVADQLTFPLSEHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAAP 64

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIPD-YRADVKR 106
           Q+G   ++  + +  D         F+NPKI++ S         EGCLS+       V R
Sbjct: 65  QVGEGVQMASLLVPNDKGEIIFKETFVNPKIVSESVRQVCLSEGEGCLSVDKVIDGYVPR 124

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +T++Y     + + I   G  A    HE+DHLNG LF D + +
Sbjct: 125 PNKLTIKYFTVEGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|242242396|ref|ZP_04796841.1| peptide deformylase [Staphylococcus epidermidis W23144]
 gi|242234152|gb|EES36464.1| peptide deformylase [Staphylococcus epidermidis W23144]
          Length = 183

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ +   ++++    +  M E + ++             G+GLA
Sbjct: 3   TMKNIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           A QI    R++ + L D    +    + +NPKI+++S  + +    EGCLS+  +    V
Sbjct: 63  APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNGI+F D++ 
Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169


>gi|21282703|ref|NP_645791.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483254|ref|YP_040478.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49485929|ref|YP_043150.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651700|ref|YP_185964.1| peptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|82750701|ref|YP_416442.1| peptide deformylase [Staphylococcus aureus RF122]
 gi|87161441|ref|YP_493689.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194790|ref|YP_499587.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221169|ref|YP_001331991.1| peptide deformylase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509274|ref|YP_001574933.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140509|ref|ZP_03565002.1| peptide deformylase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|257425143|ref|ZP_05601569.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427806|ref|ZP_05604204.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430441|ref|ZP_05606823.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433143|ref|ZP_05609501.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436042|ref|ZP_05612089.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|258423591|ref|ZP_05686481.1| polypeptide deformylase [Staphylococcus aureus A9635]
 gi|258451962|ref|ZP_05699978.1| polypeptide deformylase 2 [Staphylococcus aureus A5948]
 gi|262048678|ref|ZP_06021560.1| peptide deformylase [Staphylococcus aureus D30]
 gi|262052225|ref|ZP_06024431.1| peptide deformylase [Staphylococcus aureus 930918-3]
 gi|282903640|ref|ZP_06311528.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|282905409|ref|ZP_06313264.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908381|ref|ZP_06316212.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910668|ref|ZP_06318471.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913866|ref|ZP_06321653.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282916341|ref|ZP_06324103.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|282918790|ref|ZP_06326525.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282923912|ref|ZP_06331588.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|282925275|ref|ZP_06332932.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|283770153|ref|ZP_06343045.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
 gi|283957835|ref|ZP_06375286.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024016|ref|ZP_06378414.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132]
 gi|293500903|ref|ZP_06666754.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509859|ref|ZP_06668568.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|293526445|ref|ZP_06671130.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848080|ref|ZP_06788827.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|295427579|ref|ZP_06820211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|39930904|sp|Q8NX78|DEF_STAAW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56748622|sp|Q6GAC3|DEF_STAAS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56748624|sp|Q6GHZ4|DEF_STAAR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71153335|sp|Q5HGZ3|DEF_STAAC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21204141|dbj|BAB94839.1| pdf1 [Staphylococcus aureus subsp. aureus MW2]
 gi|49241383|emb|CAG40067.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49244372|emb|CAG42800.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285886|gb|AAW37980.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL]
 gi|82656232|emb|CAI80645.1| peptide deformylase [Staphylococcus aureus RF122]
 gi|87127415|gb|ABD21929.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202348|gb|ABD30158.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150373969|dbj|BAF67229.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368083|gb|ABX29054.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257272119|gb|EEV04251.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274647|gb|EEV06134.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278569|gb|EEV09188.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281236|gb|EEV11373.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284324|gb|EEV14444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876]
 gi|257846292|gb|EEV70316.1| polypeptide deformylase [Staphylococcus aureus A9635]
 gi|257860177|gb|EEV83009.1| polypeptide deformylase 2 [Staphylococcus aureus A5948]
 gi|259159896|gb|EEW44934.1| peptide deformylase [Staphylococcus aureus 930918-3]
 gi|259163134|gb|EEW47694.1| peptide deformylase [Staphylococcus aureus D30]
 gi|269940586|emb|CBI48965.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282313884|gb|EFB44276.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101]
 gi|282316600|gb|EFB46974.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427]
 gi|282319781|gb|EFB50129.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139]
 gi|282321934|gb|EFB52258.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899]
 gi|282325273|gb|EFB55582.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328046|gb|EFB58328.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330701|gb|EFB60215.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282592551|gb|EFB97561.1| polypeptide deformylase [Staphylococcus aureus A9765]
 gi|282595258|gb|EFC00222.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160]
 gi|283460300|gb|EFC07390.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19]
 gi|283789984|gb|EFC28801.1| peptide deformylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920517|gb|EFD97580.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095908|gb|EFE26169.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467309|gb|EFF09826.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809]
 gi|294824880|gb|EFG41302.1| polypeptide deformylase [Staphylococcus aureus A9754]
 gi|295127937|gb|EFG57571.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|298694326|gb|ADI97548.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED133]
 gi|302332701|gb|ADL22894.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|302750915|gb|ADL65092.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|315193760|gb|EFU24155.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315196121|gb|EFU26478.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323440640|gb|EGA98350.1| peptide deformylase [Staphylococcus aureus O11]
 gi|323441667|gb|EGA99313.1| peptide deformylase [Staphylococcus aureus O46]
 gi|329313759|gb|AEB88172.1| Peptide deformylase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728776|gb|EGG65197.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193]
 gi|329730791|gb|EGG67170.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 183

 Score =  130 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR+ +  +E  +  +    +  M E + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104
           A QI +  R++ + + D    +    + +NPKI++ S  + +    EGCLS+ D     V
Sbjct: 63  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|328957239|ref|YP_004374625.1| peptide deformylase [Carnobacterium sp. 17-4]
 gi|328673563|gb|AEB29609.1| peptide deformylase [Carnobacterium sp. 17-4]
          Length = 187

 Score =  130 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 20/177 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             + ++    P LR V++ +   I+ +   L ++ML+ + ++             G+GLA
Sbjct: 3   TMEDIIREGHPTLRMVAKELTLPISEEEKQLGNDMLQFLKNSQDPEIAEKYNLRAGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFSDDFS--VYQEGCLSIP-DYR 101
           A Q+ +  RL+ + +       +      V +NPKII+ S   +     EGCLS+  +  
Sbjct: 63  APQLDISKRLIAVHIPGIEEGIDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
             V R + IT+ Y D   +          A  +QHE+DH+NGI+F DH+++     I
Sbjct: 123 GYVPRHSRITLTYFDLEGELHKTRLKNYPAIVIQHEIDHINGIMFYDHINKEHPFKI 179


>gi|332685838|ref|YP_004455612.1| peptide deformylase [Melissococcus plutonius ATCC 35311]
 gi|332369847|dbj|BAK20803.1| peptide deformylase [Melissococcus plutonius ATCC 35311]
          Length = 187

 Score =  130 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 20/167 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR++++ +   +  D +NL   ML            E M+   G+GLAA Q
Sbjct: 6   DIIREGNPTLRQIAKEVPVPLTEDDINLGREMLTFLKNSQDPIKAEEMHLRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPM----VFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           + +  R++ + + D    ++ M    V  NPKI++ S  D      EGCLS+  +    V
Sbjct: 66  LDISKRIIAVHIPDLDPDQSEMLLSTVMYNPKIVSHSVQDACLSEGEGCLSVDREVSGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   IT+ Y D   +   +   G  A  +QHE+DH+NG+LF DH++
Sbjct: 126 VRHHKITITYFDETNEKHKLRLKGYAAIVVQHEIDHINGVLFYDHIN 172


>gi|27467707|ref|NP_764344.1| peptide deformylase [Staphylococcus epidermidis ATCC 12228]
 gi|57866596|ref|YP_188262.1| peptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251810544|ref|ZP_04825017.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876551|ref|ZP_06285416.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|32129485|sp|Q8CPN4|DEF_STAES RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81674995|sp|Q5HQ78|DEF_STAEQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|27315251|gb|AAO04386.1|AE016746_176 formylmethionine deformylase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637254|gb|AAW54042.1| peptide deformylase [Staphylococcus epidermidis RP62A]
 gi|251805955|gb|EES58612.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294639|gb|EFA87168.1| peptide deformylase [Staphylococcus epidermidis SK135]
 gi|329732863|gb|EGG69209.1| peptide deformylase [Staphylococcus epidermidis VCU144]
 gi|329734227|gb|EGG70543.1| peptide deformylase [Staphylococcus epidermidis VCU028]
 gi|329735535|gb|EGG71823.1| peptide deformylase [Staphylococcus epidermidis VCU045]
          Length = 183

 Score =  130 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 17/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR  ++ +   ++++    +  M E + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           A QI    R++ + L D    +    + +NPKI+++S  + +    EGCLS+  +    V
Sbjct: 63  APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDENIPGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R   +T++  D +     +   G  A   QHE+DHLNGI+F D++ 
Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169


>gi|229544091|ref|ZP_04433150.1| peptide deformylase [Bacillus coagulans 36D1]
 gi|229325230|gb|EEN90906.1| peptide deformylase [Bacillus coagulans 36D1]
          Length = 193

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 17/164 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +V   DPILR+V   +      +    +  ML+ + ++             G+GL+A Q
Sbjct: 14  DIVREGDPILRKVLDEVNMPPTEEDKAELRCMLQFLKNSQDPEIAGKCNLRAGVGLSANQ 73

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSA 108
           IG+  R+  + + D    K   VF NPK+++ S         EGCLS+       V R  
Sbjct: 74  IGLNKRMFAVYIADEDGEKAYTVF-NPKLVSHSISMIYLPQGEGCLSVDRKVDGFVPRYE 132

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I V+  D +    +I   G  A   QHE+DHLNGI+F DH+++
Sbjct: 133 RIKVKAYDLDGNEVLIKLKGYPAIVFQHEMDHLNGIMFYDHINK 176


>gi|269959028|ref|YP_003328817.1| putative polypeptide deformylase [Anaplasma centrale str. Israel]
 gi|269848859|gb|ACZ49503.1| putative polypeptide deformylase [Anaplasma centrale str. Israel]
          Length = 195

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 16/159 (10%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-------- 63
            +L+  S P+EK++ +I  L+D M +V+ ++  +G +A+Q+GV  R+  I++        
Sbjct: 13  KVLQTKSSPVEKVDDEIFELVDRMAKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAA 72

Query: 64  -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYM 115
                    H+   N +V +NP+I++FS +  V  EGCLS   Y    + R   + ++Y 
Sbjct: 73  QDIKVLSGYHSLSGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYT 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           D      +I A   LA C+QHELDHLNG+L  + +  ++
Sbjct: 133 DLMGNECVIRAYNWLARCIQHELDHLNGVLLANLVDNIR 171


>gi|169404547|pdb|2OS0|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E.
           Faecalis And S. Pyogenes
          Length = 188

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 20/172 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++   +P LR V+  +   I  +   L ++ML  + ++              +GLA
Sbjct: 3   TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSV--YQEGCLSIP-DYR 101
           A Q+ +  R++ + +  +           V  NPKI++ S         EGCLS+  D  
Sbjct: 63  APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++ 
Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174


>gi|257870629|ref|ZP_05650282.1| peptide deformylase [Enterococcus gallinarum EG2]
 gi|257804793|gb|EEV33615.1| peptide deformylase [Enterococcus gallinarum EG2]
          Length = 187

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 20/168 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V++ +   ++   + L  +M+E + ++             G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAKEVPFPLSEADIQLGKDMMEFLENSQDPVKAEELNLRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQ----DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADV 104
           + +  R+  + +     ++   +   V  NPKI++ S   +     EGCLS+  +    V
Sbjct: 66  LDISKRITAVLVPSSDPENPEPEFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R A IT+ Y D   + Q +      A  +QHE+DHLNG++F DH++ 
Sbjct: 126 VRHARITISYYDMQGKKQKVRLKNYAAIVVQHEIDHLNGVMFYDHINE 173


>gi|295103440|emb|CBL00984.1| N-formylmethionyl-tRNA deformylase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 136

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58
           + +P+    DP+ L + S P    ++ +     ++LE +  ++   +G+AA  IGVL R+
Sbjct: 1   MIQPI--MHDPLFLAQKSAPATPEDAPV---ARDLLETLTAHADGCVGMAANMIGVLKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + ++ +D       +V  NP I+  S  +   +EGCLS+   R   KR   I V+Y   +
Sbjct: 56  IAVEAED-----GYLVLFNPVILKKSGQYEA-EEGCLSLEGVR-KTKRWQSIKVQYQTMD 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +I    G  A  +QHE+DH +GIL 
Sbjct: 109 GKPRIKTFTGWTAQIIQHEIDHCDGILI 136


>gi|260583921|ref|ZP_05851669.1| peptide deformylase [Granulicatella elegans ATCC 700633]
 gi|260158547|gb|EEW93615.1| peptide deformylase [Granulicatella elegans ATCC 700633]
          Length = 185

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 18/175 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K +V+   P LR+ +  I   ++ D+ +L   MLE ++++             G+GLA
Sbjct: 3   TMKDIVLEGHPALRKRAGKISFPLSDDLQHLAKEMLEFLHNSQDEEIAAKYELRAGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPM--VFINPKIITFSDDFSV--YQEGCLSI-PDYRAD 103
           A Q+G   +++ + +  +      +  V+INP+I+  S   +     EGCLS+  D    
Sbjct: 63  APQLGKEIQMIALLIPGYEDEPALLDEVWINPRILRESVKKTCLKEGEGCLSVNRDVPGV 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           V R   ITV+Y     + ++       A  +QHE+DHLNG++F DH+++ +   I
Sbjct: 123 VLRPQRITVKYFTPEGEEKVKTLTDYEAIVVQHEIDHLNGVMFYDHINQAQPQYI 177


>gi|57238913|ref|YP_180049.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden]
 gi|58578845|ref|YP_197057.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden]
 gi|58616903|ref|YP_196102.1| peptide deformylase 1 [Ehrlichia ruminantium str. Gardel]
 gi|57160992|emb|CAH57898.1| putative peptide deformylase 2 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416515|emb|CAI27628.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Gardel]
 gi|58417471|emb|CAI26675.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden]
          Length = 194

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 16/157 (10%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63
           L  +S PIEKI+ D++ L D+M++VM ++  +GL+AVQ+G   R+ VI++          
Sbjct: 15  LHAISHPIEKIDQDVIALADDMMKVMENSKTVGLSAVQLGSHKRMFVINMFSGLFDMTQD 74

Query: 64  -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDC 117
                  H+     MV INP+I++FS +     EGC S   Y   ++ R   +  RY D 
Sbjct: 75  IKVLSGHHSLHGKNMVCINPEILSFSAETVDLFEGCSSAKSYGLINITRPRHMDFRYTDL 134

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                II   G L+ C+QHE+DHLNGIL  + +  +K
Sbjct: 135 FGNKCIIRVYGWLSRCIQHEMDHLNGILLANVVDNIK 171


>gi|293366921|ref|ZP_06613596.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291318896|gb|EFE59267.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 180

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 17/165 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K ++    P LR  ++ +   ++++    +  M E + ++             G+GLAA 
Sbjct: 2   KDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLAAP 61

Query: 51  QIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKR 106
           QI    R++ + L D    +    + +NPKI+++S  + +    EGCLS+  +    V R
Sbjct: 62  QINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDENIPGLVHR 121

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +T++  D +     +   G  A   QHE+DHLNGI+F D++ 
Sbjct: 122 HHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 166


>gi|326692674|ref|ZP_08229679.1| peptide deformylase [Leuconostoc argentinum KCTC 3773]
          Length = 192

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 26/177 (14%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43
           M  +     +    +P+LR+V+  +   ++ +   L ++M+            E      
Sbjct: 1   MTIRFTMDKITRDGEPVLRQVAEKVPFPLSEEHAQLAEDMMTYLVISQDEEQNEKYGLRP 60

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQ--EGCL 95
           G+GLAA Q+G   ++  + +      +            NP II+ S   +     EGCL
Sbjct: 61  GVGLAAPQVGESLQMAAVLIPSQDPHERDAEPYFKGTIFNPVIISESVKRAALDVGEGCL 120

Query: 96  SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           S+  D    V R+  ITVRY +   + + +      A   QHE+DHL+G L+ DH++
Sbjct: 121 SVDEDVPGFVPRANRITVRYQNEQGETKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 177


>gi|88606874|ref|YP_505573.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ]
 gi|88597937|gb|ABD43407.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ]
          Length = 197

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-------- 63
            +L  VS P+E ++S    +++ M+++    D +GL+AVQ+G   R+ VID+        
Sbjct: 13  KVLHTVSSPLESVDSATREIVNEMIKIAERGDTVGLSAVQLGYPIRVFVIDMFSGLFNIT 72

Query: 64  -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-RADVKRSAFITVRYM 115
                    H+H    +V INP+I++FS +     EGCLS+  Y    ++R   + ++Y 
Sbjct: 73  EDLKVISGHHSHNTRSLVCINPQIVSFSGETVTLFEGCLSVKSYGMVGIQRPGNVDLKYT 132

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D      +I     LA C+QHE+DHLNG+L  + L  +K      
Sbjct: 133 DLAGNVCVIRTFNWLARCVQHEMDHLNGVLLANMLDNIKNKSAQS 177


>gi|300770446|ref|ZP_07080325.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762922|gb|EFK59739.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 430

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 7/151 (4%)

Query: 7   VIFPD--PILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVID 62
           V  P+   IL+  S+ I+  +  +  L   M   +   D  G+G+AA Q+G+      I 
Sbjct: 258 VTEPNDLEILKAPSQDIKYDDPLLDLLSQRMYATVNDPDHSGVGIAAPQVGINKN--AIW 315

Query: 63  LQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +Q    +  P  F +NPKII  S       EGCLSIP  + DV RS  I ++Y++     
Sbjct: 316 VQRFDKKDTPFEFYVNPKIIWRSKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYVNKTGDI 375

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                +G  A   QHE+DHL GILF D L  
Sbjct: 376 IEENIEGFTAVIFQHEVDHLYGILFTDRLEE 406


>gi|270291431|ref|ZP_06197653.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
 gi|304385144|ref|ZP_07367490.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
 gi|270280277|gb|EFA26113.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
 gi|304329338|gb|EFL96558.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
          Length = 184

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +    +P+LR+ +  +   ++   + + D M+E + ++             G+GLAA Q
Sbjct: 6   DITRDGNPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPKIAQKYHLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFSDDFSVYQEG--CLSIP-DYRADVKRS 107
           IG+  ++  + +             +NP I++ S   +   EG  CLS+  +    V R 
Sbjct: 66  IGLSIQMASVLVPGPDDEIIFEETLVNPVIVSQSVQVAALDEGEGCLSVDKEVPGYVPRY 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             IT+RY +   + + I      A   QHE+DHL G LF DH+++
Sbjct: 126 DRITIRYQNVEGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINK 170


>gi|295425141|ref|ZP_06817846.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
 gi|295065200|gb|EFG56103.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
          Length = 200

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           K +    +P+LR+V++P+   ++     L  +M+E + ++             G+GLAA 
Sbjct: 21  KDITRDGNPVLRKVAQPLTFPLSDHYKQLAKDMMEYLINSQDPKIAEKHQLRAGVGLAAP 80

Query: 51  QIGVLYRLVVIDLQDH-AHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKR 106
           Q+    ++  + + D   +      F+NP+II+ S         EGCLS+  +    V R
Sbjct: 81  QVDESVQMASLLVPDDKGNILFKETFVNPEIISESVRKVCLSEGEGCLSVDKEIDGYVPR 140

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              +T+ Y   + + + I      A    HE+DHLNG LF D +++
Sbjct: 141 PDKLTIHYFTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 186


>gi|229823199|ref|ZP_04449268.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271]
 gi|229787365|gb|EEP23479.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271]
          Length = 185

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 22/170 (12%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAV 50
           + ++    P LR+ +  +E  +  ++      M E + ++             G+GLAA 
Sbjct: 2   QDIIEEGHPTLRQAAEAVEFPLTDELKATALAMHEFLVNSQNPEIAEKYGLRAGVGLAAP 61

Query: 51  QIGVLYRLVVIDLQDHAHRKNP------MVFINPKIITFSDDFSV--YQEGCLSI-PDYR 101
           QI +  ++  + +  +    N        +  NPKII+ S         EGCLS+  +  
Sbjct: 62  QINLPKQIFAVHIMSYDEEGNEAEPLLSEILFNPKIISHSVQEVALRDGEGCLSVNREVP 121

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             V R   I +RY D   +   +      A  +QHELDHL GI+F DH++
Sbjct: 122 GLVPRPRRIRLRYQDMEGKEHELRLRDYEAIVVQHELDHLKGIMFYDHIN 171


>gi|332830436|gb|EGK03064.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286]
          Length = 189

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 14  LRRVSRPIE----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           LR+ S  I       + D  + I  +   +    G+G+AA Q+GV   L +    D   +
Sbjct: 32  LRKKSIDINIKNIASDKDWQHFIQRLKLTLAVESGVGIAAPQVGVGRNLFLFTRIDRPDK 91

Query: 70  KNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               V INP+I+  SD+   ++ +GCLS+PD     KR A+I V Y +   +       G
Sbjct: 92  AI-QVAINPRIVNHSDETICFEGDGCLSVPDLSGSTKRYAWIDVEYYNEKGELIKERLSG 150

Query: 129 ------LLATCLQHELDHLNGILFIDHL 150
                       QHE DHL GILFID L
Sbjct: 151 QSRGSDFTGIIFQHEFDHLQGILFIDRL 178


>gi|300768287|ref|ZP_07078192.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494351|gb|EFK29514.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 186

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 20/171 (11%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIG 46
           M+K + ++   +  LR  ++ ++  ++     L ++M+E + ++             G+G
Sbjct: 1   MIKMRDIIREGNHTLRAEAKQVKFPLSEADQKLANDMMEYLENSQNPELAKKYGLRAGVG 60

Query: 47  LAAVQIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFS--DDFSVYQEGCLSIP-DY 100
           LAA Q+ V  ++  + +        P+   V INP II+ S         EGCLS+  D 
Sbjct: 61  LAAPQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDI 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R   IT+RY +   + + I      A   QHE+DHL+GILF DH++
Sbjct: 121 AGYVIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171


>gi|156303056|ref|XP_001617464.1| hypothetical protein NEMVEDRAFT_v1g78625 [Nematostella vectensis]
 gi|156193964|gb|EDO25364.1| predicted protein [Nematostella vectensis]
          Length = 135

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + +P+LR+VS  I K   ++   I +M E MY   G+GLAA Q+G+  RL VI
Sbjct: 9   MILPIYGYGEPVLRKVSEEITKEYPNLKETIADMFETMYQAYGLGLAAPQVGLPIRLFVI 68

Query: 62  DLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D +  A                  VFIN KI+    D   + EGCLSIPD R DV R   
Sbjct: 69  DTEPLADSDEVSKEEAEELKTFKKVFINAKILKEEGDVWGFNEGCLSIPDVREDVFRHET 128

Query: 110 ITVRYMD 116
           IT+ Y D
Sbjct: 129 ITIEYYD 135


>gi|299822499|ref|ZP_07054385.1| peptide deformylase [Listeria grayi DSM 20601]
 gi|299816028|gb|EFI83266.1| peptide deformylase [Listeria grayi DSM 20601]
          Length = 182

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 17/164 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V    P LR+V+  +   ++ +   L   ML  + ++             G+GLAA Q
Sbjct: 6   DIVREGHPALRKVADEVTFPLSQEEKELGREMLTFLKNSQDEEIAEKYGLRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108
           + VL R++ I ++D   R       NPKI + S   +     EGCLS+  +    V R  
Sbjct: 66  LAVLKRIIAIHIED-EDRTYSYTLYNPKIRSHSVQEACLAGGEGCLSVDREVPGFVVRKE 124

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +T+   D +     +      A  +QHE+DHLNG++F DH++ 
Sbjct: 125 RVTIEAFDEDGNPIKLRLKSYPAIVVQHEIDHLNGVMFYDHIND 168


>gi|28378768|ref|NP_785660.1| peptide deformylase [Lactobacillus plantarum WCFS1]
 gi|254556973|ref|YP_003063390.1| peptide deformylase [Lactobacillus plantarum JDM1]
 gi|38257321|sp|Q88VB2|DEF_LACPL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|28271605|emb|CAD64511.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1]
 gi|254045900|gb|ACT62693.1| peptide deformylase [Lactobacillus plantarum JDM1]
          Length = 186

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 20/171 (11%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIG 46
           M+K + ++   +  LR  ++ ++  ++     L ++M+E + ++             G+G
Sbjct: 1   MIKMRDIIREGNHTLRAEAKQVKFPLSEADQKLANDMMEYLENSQDPELAKKYGLRAGVG 60

Query: 47  LAAVQIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFS--DDFSVYQEGCLSIP-DY 100
           LAA Q+ V  ++  + +        P+   V INP II+ S         EGCLS+  D 
Sbjct: 61  LAAPQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDI 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R   IT+RY +   + + I      A   QHE+DHL+GILF DH++
Sbjct: 121 AGYVIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171


>gi|227538920|ref|ZP_03968969.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241123|gb|EEI91138.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 432

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           IL+  S+ I+  +  +  L   M   +   D  G+G+AA Q+G+      I +Q    + 
Sbjct: 268 ILKATSQDIKYDDPLLELLSQRMYATVNDPDHSGVGIAAPQVGINKN--AIWVQRFDKKD 325

Query: 71  NPMVF-INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
            P  F +NPKII  S       EGCLSIP  + DV RS  I ++Y++          +G 
Sbjct: 326 TPFEFYVNPKIIWRSKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYVNKTGDIIEENIEGF 385

Query: 130 LATCLQHELDHLNGILFIDHLSR 152
            A   QHE+DHL GILF D L  
Sbjct: 386 TAVIFQHEVDHLYGILFTDRLEE 408


>gi|308180961|ref|YP_003925089.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046452|gb|ADN98995.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 186

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 1   MVK-KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIG 46
           M+K + ++   +  LR  ++ +   ++     L ++M+E + ++             G+G
Sbjct: 1   MIKMRDIIREGNHTLRAEAKQVNFPLSEADQKLANDMMEYLENSQDPELAKKYGLRAGVG 60

Query: 47  LAAVQIGVLYRLVVIDLQDHAHRKNPM---VFINPKIITFS--DDFSVYQEGCLSIP-DY 100
           LAA Q+ V  ++  + +        P+   V INP II+ S         EGCLS+  D 
Sbjct: 61  LAAPQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDI 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              V R   IT+RY +   + + I      A   QHE+DHL+GILF DH++
Sbjct: 121 AGYVIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171


>gi|321463123|gb|EFX74141.1| hypothetical protein DAPPUDRAFT_307445 [Daphnia pulex]
          Length = 234

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP LR  S  +   E  +  I N++  +  VM     IG++A QIG+  R+++I++ 
Sbjct: 49  QLGDPTLRLKSSEVVLDELSSERIKNILLVLRGVMKHYKAIGISAPQIGIPLRIIMIEIP 108

Query: 65  DHA-HRKNP-------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D    +  P              VFINP +       +++ E C S+    A V R   +
Sbjct: 109 DSLVEKFGPETCKTREIVPTPFKVFINPVMQVKDFKKTLFPEACESLKGISAIVPRYRAV 168

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            V+  + +       A G  A  +QHE+DHL+G ++ D + 
Sbjct: 169 HVKGYEYDGSPTEWDATGWAARIVQHEMDHLDGQIYTDIME 209


>gi|224510906|pdb|3G6N|A Chain A, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser
 gi|224510907|pdb|3G6N|B Chain B, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser
          Length = 191

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 22/174 (12%)

Query: 1   MVK--KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45
           M+     ++   +P LR V++ +   ++ + ++L   MLE + ++             G+
Sbjct: 4   MMITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGV 63

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           GLAA Q+ +  R++ + +       +      V  NPKI++ S  D      EGCLS+  
Sbjct: 64  GLAAPQLDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDR 123

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++ 
Sbjct: 124 EVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 177


>gi|220702375|pdb|3CMD|A Chain A, Crystal Structure Of Peptide Deformylase From
           Vre-E.Faecium
 gi|220702376|pdb|3CMD|B Chain B, Crystal Structure Of Peptide Deformylase From
           Vre-E.Faecium
          Length = 196

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 22/174 (12%)

Query: 1   MVK--KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45
           M+     ++   +P LR V++ +   ++ + ++L   MLE + ++             G+
Sbjct: 9   MMITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGV 68

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           GLAA Q+ +  R++ + +       +      V  NPKI++ S  D      EGCLS+  
Sbjct: 69  GLAAPQLDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDR 128

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++ 
Sbjct: 129 EVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 182


>gi|229821583|ref|YP_002883109.1| Peptide deformylase [Beutenbergia cavernae DSM 12333]
 gi|229567496|gb|ACQ81347.1| Peptide deformylase [Beutenbergia cavernae DSM 12333]
          Length = 217

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 3   KKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             P+V    P+LR  +     E        L++ M   M +  G+GLAA QIG+   + V
Sbjct: 18  VLPIVSAGAPVLRAPAARYGGELGAERFHRLLEAMRVTMRTAPGVGLAAPQIGLPLAIAV 77

Query: 61  IDLQDHA-------HRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           I+              + P+   V +NP       +   + EGCLS+P Y A   R   +
Sbjct: 78  IEDPGVDDDATAAARERVPVAFRVLVNPTYTPAGPERVSFYEGCLSVPGYVAVRARWRRV 137

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            +   D           G  A  +QHE+DHL G L++D
Sbjct: 138 RLLAADEAGNAVAEELAGWPARIVQHEVDHLAGELYLD 175


>gi|254994774|ref|ZP_05276964.1| Peptide deformylase [Anaplasma marginale str. Mississippi]
 gi|255002896|ref|ZP_05277860.1| Peptide deformylase [Anaplasma marginale str. Puerto Rico]
 gi|255004027|ref|ZP_05278828.1| Peptide deformylase [Anaplasma marginale str. Virginia]
          Length = 195

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 16/158 (10%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------- 63
           +L+  S PIEK++ +++ L+D M +V+ ++  +G +A+Q+GV  R+  I++         
Sbjct: 14  VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 73

Query: 64  ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116
                   H+   N +V +NP+I++FS +  V  EGCLS   Y    + R   + ++Y D
Sbjct: 74  DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 133

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                 +I A   LA C+QHE+DHLNG+L  + +  ++
Sbjct: 134 LMGNECVIRAYNWLARCIQHEMDHLNGVLLANLVDNIR 171


>gi|69248512|ref|ZP_00604761.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257878822|ref|ZP_05658475.1| peptide deformylase [Enterococcus faecium 1,230,933]
 gi|257881459|ref|ZP_05661112.1| peptide deformylase [Enterococcus faecium 1,231,502]
 gi|257885731|ref|ZP_05665384.1| peptide deformylase [Enterococcus faecium 1,231,501]
 gi|257890681|ref|ZP_05670334.1| peptide deformylase [Enterococcus faecium 1,231,410]
 gi|258615107|ref|ZP_05712877.1| peptide deformylase [Enterococcus faecium DO]
 gi|260558387|ref|ZP_05830583.1| peptide deformylase [Enterococcus faecium C68]
 gi|261207094|ref|ZP_05921783.1| peptide deformylase [Enterococcus faecium TC 6]
 gi|289565904|ref|ZP_06446344.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|293556871|ref|ZP_06675432.1| peptide deformylase [Enterococcus faecium E1039]
 gi|293563619|ref|ZP_06678063.1| peptide deformylase [Enterococcus faecium E1162]
 gi|293567826|ref|ZP_06679167.1| peptide deformylase [Enterococcus faecium E1071]
 gi|294614601|ref|ZP_06694505.1| peptide deformylase [Enterococcus faecium E1636]
 gi|294618483|ref|ZP_06698047.1| peptide deformylase [Enterococcus faecium E1679]
 gi|294621220|ref|ZP_06700405.1| peptide deformylase [Enterococcus faecium U0317]
 gi|314938849|ref|ZP_07846120.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|314943654|ref|ZP_07850408.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|314949089|ref|ZP_07852449.1| peptide deformylase [Enterococcus faecium TX0082]
 gi|314952182|ref|ZP_07855200.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|314991844|ref|ZP_07857301.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|314996555|ref|ZP_07861592.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|29650280|gb|AAO88058.1| peptide deformylase [Enterococcus faecium]
 gi|68194406|gb|EAN08912.1| Formylmethionine deformylase [Enterococcus faecium DO]
 gi|257813050|gb|EEV41808.1| peptide deformylase [Enterococcus faecium 1,230,933]
 gi|257817117|gb|EEV44445.1| peptide deformylase [Enterococcus faecium 1,231,502]
 gi|257821587|gb|EEV48717.1| peptide deformylase [Enterococcus faecium 1,231,501]
 gi|257827041|gb|EEV53667.1| peptide deformylase [Enterococcus faecium 1,231,410]
 gi|260075561|gb|EEW63867.1| peptide deformylase [Enterococcus faecium C68]
 gi|260078722|gb|EEW66424.1| peptide deformylase [Enterococcus faecium TC 6]
 gi|289162277|gb|EFD10137.1| polypeptide deformylase [Enterococcus faecium D344SRF]
 gi|291589411|gb|EFF21218.1| peptide deformylase [Enterococcus faecium E1071]
 gi|291592503|gb|EFF24108.1| peptide deformylase [Enterococcus faecium E1636]
 gi|291595240|gb|EFF26569.1| peptide deformylase [Enterococcus faecium E1679]
 gi|291599216|gb|EFF30248.1| peptide deformylase [Enterococcus faecium U0317]
 gi|291600955|gb|EFF31246.1| peptide deformylase [Enterococcus faecium E1039]
 gi|291604419|gb|EFF33909.1| peptide deformylase [Enterococcus faecium E1162]
 gi|313589296|gb|EFR68141.1| peptide deformylase [Enterococcus faecium TX0133a01]
 gi|313593549|gb|EFR72394.1| peptide deformylase [Enterococcus faecium TX0133B]
 gi|313595714|gb|EFR74559.1| peptide deformylase [Enterococcus faecium TX0133A]
 gi|313597691|gb|EFR76536.1| peptide deformylase [Enterococcus faecium TX0133C]
 gi|313641860|gb|EFS06440.1| peptide deformylase [Enterococcus faecium TX0133a04]
 gi|313644505|gb|EFS09085.1| peptide deformylase [Enterococcus faecium TX0082]
          Length = 187

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 20/168 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V++ +   ++ + ++L   MLE + ++             G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           + +  R++ + +       +      V  NPKI++ S  D      EGCLS+  +    V
Sbjct: 66  LDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++ 
Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173


>gi|241896030|ref|ZP_04783326.1| peptide deformylase [Weissella paramesenteroides ATCC 33313]
 gi|241870761|gb|EER74512.1| peptide deformylase [Weissella paramesenteroides ATCC 33313]
          Length = 195

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 28/178 (15%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V   D +LR  +  +E  ++ ++     NM+E +  +             G+GLAA Q
Sbjct: 6   EIVRDGDKVLRERAAKVEFPLSDEVKEASKNMMEYLVVSQDEKENEKYGLRPGVGLAAPQ 65

Query: 52  IGVLYRLVVI-----DLQDHAHRKN-------PMVFINPKIITFSDDF--SVYQEGCLSI 97
           +G+  +   I     D+++   +K             NP I   S         EGCLS+
Sbjct: 66  VGISQQFTSILIPSDDVEELQDKKTTDSDYFFKGTIYNPVITRQSVKKGALSMGEGCLSV 125

Query: 98  P-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
             D    V RS  ITV++ D N   Q +  +G  A   QHE+DHL+G L+ DH+++ +
Sbjct: 126 DNDLPGYVARSYRITVKFQDENGDKQELRLEGYPAIVFQHEIDHLHGTLYYDHINKTE 183


>gi|290562011|gb|ADD38403.1| Peptide deformylase, mitochondrial [Lepeophtheirus salmonis]
          Length = 247

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 6   LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DPILR     I   E     I ++ D +L V+   D +G++A QIG    +  + 
Sbjct: 41  VVQIGDPILRGKVEEIPLSEIKTPFINSIADKLLHVLKKYDAVGVSAPQIGTPIAMFAVG 100

Query: 63  L---------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
                           +       P V INP+I       S ++EGC S+  + A V R 
Sbjct: 101 FTKSQIKSWSTETVAKEGMEPIDPPRVVINPRIDIIDSSSSTHREGCCSLYGFSAQVARY 160

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             + ++  + + +     A    A  +QHE+DHL+G LFID
Sbjct: 161 RKVLLKGYNIHGEAFEWLATDWTARIIQHEMDHLSGKLFID 201


>gi|19746868|ref|NP_608004.1| peptide deformylase [Streptococcus pyogenes MGAS8232]
 gi|25452912|sp|Q8NZB7|DEF_STRP8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|19749109|gb|AAL98503.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232]
          Length = 204

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++   +P LR V++ +   +  + + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           I V  R++ + + +      NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 78  IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y D   Q   I   G  A  +QHE+DH+NGILF D ++        
Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGILFYDRINAKNPFETK 197

Query: 160 KKM 162
           +++
Sbjct: 198 EEL 200


>gi|56808716|ref|ZP_00366436.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes
           M49 591]
 gi|209560096|ref|YP_002286568.1| peptide deformylase [Streptococcus pyogenes NZ131]
 gi|238058214|sp|B5XIL1|DEF_STRPZ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|209541297|gb|ACI61873.1| Peptide deformylase [Streptococcus pyogenes NZ131]
          Length = 204

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++   +P LR V++ +   +  + + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQNPVMAEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           I V  R++ + + +      NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 78  IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y D   Q   I   G  A  +QHE+DH+NG+LF D ++        
Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKNPFETK 197

Query: 160 KKM 162
           +++
Sbjct: 198 EEL 200


>gi|294786544|ref|ZP_06751798.1| peptide deformylase [Parascardovia denticolens F0305]
 gi|294485377|gb|EFG33011.1| peptide deformylase [Parascardovia denticolens F0305]
          Length = 234

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 27/174 (15%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR  + P + ++ +  ++L+   M + M +  G+GLA  QIG+   + V++
Sbjct: 30  PIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVVE 89

Query: 63  ------------------------LQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSI 97
                                            P   I NP      D+ + + EGCLS 
Sbjct: 90  DHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCLSF 149

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             Y+A  KR   I   + D              A   QHE DHL+G ++ID   
Sbjct: 150 DGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYIDKAE 203


>gi|56416555|ref|YP_153629.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries]
 gi|222474923|ref|YP_002563338.1| Peptide deformylase [Anaplasma marginale str. Florida]
 gi|56387787|gb|AAV86374.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries]
 gi|222419059|gb|ACM49082.1| Peptide deformylase [Anaplasma marginale str. Florida]
          Length = 196

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 16/158 (10%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------- 63
           +L+  S PIEK++ +++ L+D M +V+ ++  +G +A+Q+GV  R+  I++         
Sbjct: 15  VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 74

Query: 64  ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD 116
                   H+   N +V +NP+I++FS +  V  EGCLS   Y    + R   + ++Y D
Sbjct: 75  DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 134

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
                 +I A   LA C+QHE+DHLNG+L  + +  ++
Sbjct: 135 LMGNECVIRAYNWLARCIQHEMDHLNGVLLANLVDNIR 172


>gi|225867820|ref|YP_002743768.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus]
 gi|259645185|sp|C0MFA6|DEF_STRS7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225701096|emb|CAW97934.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus]
          Length = 204

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++   +P LR V++ +E  ++ D + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           I V  R++ + +        NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 78  IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y D + +   I   G  A  +QHE+DH+NG+LF D ++  K     
Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKKPFEAK 197

Query: 160 KKM 162
           + M
Sbjct: 198 EGM 200


>gi|315226122|ref|ZP_07867910.1| peptide deformylase [Parascardovia denticolens DSM 10105]
 gi|315120254|gb|EFT83386.1| peptide deformylase [Parascardovia denticolens DSM 10105]
          Length = 244

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 27/174 (15%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           P+V   +P+LR  + P + ++ +  ++L+   M + M +  G+GLA  QIG+   + V++
Sbjct: 40  PIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVVE 99

Query: 63  ------------------------LQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSI 97
                                            P   I NP      D+ + + EGCLS 
Sbjct: 100 DHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCLSF 159

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             Y+A  KR   I   + D              A   QHE DHL+G ++ID   
Sbjct: 160 DGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYIDKAE 213


>gi|253581454|ref|ZP_04858679.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725]
 gi|251836524|gb|EES65059.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725]
          Length = 161

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYS-----TDGIGLAAVQIGVL 55
           +KK +++  +  L ++S P++K    +I  ++ N+ + +         G  +AA QIGV 
Sbjct: 1   MKKEILLLGNEELYQISEPLKKDEIENIKFIVQNLHDTLLDFREKYHAGRAIAAPQIGVK 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ + +        P++FINP +    D+     + C+S P+    VKR     ++Y+
Sbjct: 61  KRLLYMFID------KPVIFINPVLEFPDDEMMEVLDDCMSFPNLLVKVKRYKRCRIKYL 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D + + Q +  +G LA  LQHE DHL+GIL        K  +I K
Sbjct: 115 DMDWKEQEMSLEGDLAELLQHEYDHLDGILATMRAIDNKSFVIKK 159


>gi|306832702|ref|ZP_07465839.1| peptide deformylase [Streptococcus bovis ATCC 700338]
 gi|304425158|gb|EFM28287.1| peptide deformylase [Streptococcus bovis ATCC 700338]
          Length = 204

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + ML            E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDEEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           + +  R++ + + +   +  NP         V  NPK++  S  D      EGCLS+   
Sbjct: 78  LDISKRIIAVLVPNPEDKDGNPPKDAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R + +TV Y D N +   I   G  +  +QHE+DH NGI+F D +       I 
Sbjct: 138 VEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRIDEKNPFAIK 197

Query: 160 KKM 162
           K M
Sbjct: 198 KGM 200


>gi|227550841|ref|ZP_03980890.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257887905|ref|ZP_05667558.1| peptide deformylase [Enterococcus faecium 1,141,733]
 gi|257893294|ref|ZP_05672947.1| peptide deformylase [Enterococcus faecium 1,231,408]
 gi|257896477|ref|ZP_05676130.1| peptide deformylase [Enterococcus faecium Com12]
 gi|293379255|ref|ZP_06625401.1| peptide deformylase [Enterococcus faecium PC4.1]
 gi|227179939|gb|EEI60911.1| peptide deformylase [Enterococcus faecium TX1330]
 gi|257823959|gb|EEV50891.1| peptide deformylase [Enterococcus faecium 1,141,733]
 gi|257829673|gb|EEV56280.1| peptide deformylase [Enterococcus faecium 1,231,408]
 gi|257833042|gb|EEV59463.1| peptide deformylase [Enterococcus faecium Com12]
 gi|292642051|gb|EFF60215.1| peptide deformylase [Enterococcus faecium PC4.1]
          Length = 187

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 20/168 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V+  +   ++ + ++L   MLE + ++             G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAEEVSLPLSEEDLSLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           + +  R++ + +       +      V  NPKI++ S  D      EGCLS+  +    V
Sbjct: 66  LDISKRIIAVHVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++ 
Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173


>gi|257899443|ref|ZP_05679096.1| peptide deformylase [Enterococcus faecium Com15]
 gi|293573058|ref|ZP_06683999.1| peptide deformylase [Enterococcus faecium E980]
 gi|257837355|gb|EEV62429.1| peptide deformylase [Enterococcus faecium Com15]
 gi|291606877|gb|EFF36258.1| peptide deformylase [Enterococcus faecium E980]
          Length = 187

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 20/168 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V+  +   ++ + ++L   MLE + ++             G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAEEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNP----MVFINPKIITFS--DDFSVYQEGCLSIP-DYRADV 104
           + +  R++ + +       +      V  NPKI++ S  D      EGCLS+  +    V
Sbjct: 66  LDISKRIIAVHVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R A ITV Y D N +   I      +  +QHE+DH+NG++F DH++ 
Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173


>gi|159040197|ref|YP_001539450.1| formylmethionine deformylase [Salinispora arenicola CNS-205]
 gi|157919032|gb|ABW00460.1| formylmethionine deformylase [Salinispora arenicola CNS-205]
          Length = 187

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 6/153 (3%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI 61
            + ++  P  +L R    ++    + + L  +++  M  + G +GLAA QIGV  R+  +
Sbjct: 23  VRQVLSAPATVLSRAGGDVDPTAEETVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAV 82

Query: 62  DLQDHAH---RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MDC 117
           D+  HA         V  N  ++  S  + V +EGC+S+PD   DVKR+  + V   +  
Sbjct: 83  DVTGHAKAAIVHGAFVLCNAVVVAAS-RWKVGREGCMSVPDLTGDVKRAGQLVVEGELPA 141

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
             +   +  +   A  LQHE+DH  G+LF+D +
Sbjct: 142 TGKAVRLVTNAFEARALQHEIDHCAGLLFLDRV 174


>gi|170017441|ref|YP_001728360.1| peptide deformylase [Leuconostoc citreum KM20]
 gi|169804298|gb|ACA82916.1| peptide deformylase [Leuconostoc citreum KM20]
          Length = 195

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 29/180 (16%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43
           M  +     +    DP+LR+VS  +   ++ +   L  +M+            E      
Sbjct: 1   MTIRFTMDKITRDGDPVLRQVSTAVPFPLSEEHAQLAQDMMTYLVVSQDEEENEKYGLRP 60

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN---------PMVFINPKIITFSDDFSVYQ--E 92
           G+GLAA Q+G   ++  I +      +               NP II+ S   S     E
Sbjct: 61  GVGLAAPQVGYSLQMTSILIPALETHEQDEQDDKPYFKGTIFNPVIISESVKRSALNVGE 120

Query: 93  GCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           GCLS+  D    V R+  ITVRY D     + +      A   QHE+DHL+G L+ DH++
Sbjct: 121 GCLSVDEDVPGFVPRANRITVRYQDETGATKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 180


>gi|157150181|ref|YP_001449640.1| peptide deformylase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|189083079|sp|A8AV30|DEF_STRGC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157074975|gb|ABV09658.1| polypeptide deformylase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 204

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 25/184 (13%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           + ++   +P LR V+  +   +  + + L + M++ ++++             G+GLAA 
Sbjct: 17  RDIIREGNPTLRAVAEEVSFPLADEDILLGEKMMQFLHNSQDPVMAEKLGLRGGVGLAAP 76

Query: 51  QIGVLYRLVVIDLQDHAHRKN---------PMVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  R++ + L +                 V  NPKI+  S  D      EGCLS+  
Sbjct: 77  QLDISRRIIAVLLPNPEDENGNSPQEAYALKEVMYNPKIVAHSVQDAALADGEGCLSVDR 136

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           D    V R A +TV Y D N +   +   G  A  +QHE+DH+NGI+F D ++      I
Sbjct: 137 DVPGYVVRHARVTVDYFDKNGEKHRVKLKGYKAIVVQHEIDHINGIMFYDRINETDPFAI 196

Query: 159 TKKM 162
            + M
Sbjct: 197 KEGM 200


>gi|78776817|ref|YP_393132.1| formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251]
 gi|78497357|gb|ABB43897.1| Formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251]
          Length = 283

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K +V +P P   + +  +   N +I +LI+++ + + +     LAA QIG  + +VV+
Sbjct: 20  MIKEIVTYPTPPSVQYATDVRVFNEEIESLIEDLKDTIKANSLEALAAFQIGSYFNIVVV 79

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                      +  INP+II      +  ++     P+  A+V R   I++ Y D   Q 
Sbjct: 80  AQDG----GEFLELINPRIINPHGRVTTIEKTAY-FPNLSAEVTRYETISLVYQDRELQQ 134

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             + ADG  +  LQ ++D+  G  F++ L+++++ +  KK+ 
Sbjct: 135 HSLKADGAFSILLQRKVDYTFGSTFLNKLNKVEKKLFQKKLE 176


>gi|169404549|pdb|2OS3|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E.
           Faecalis And S. Pyogenes
          Length = 205

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++   +P LR V++ +   +  + + L + M++ +  +             G+GLAA Q
Sbjct: 17  DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 76

Query: 52  IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           I V  R++ + + +      NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 77  IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 136

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y D   Q   I   G  A  +QHE+DH+NG+LF D ++        
Sbjct: 137 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKNPFETK 196

Query: 160 KKM 162
           +++
Sbjct: 197 EEL 199


>gi|324992462|gb|EGC24383.1| peptide deformylase [Streptococcus sanguinis SK405]
 gi|327472415|gb|EGF17846.1| peptide deformylase [Streptococcus sanguinis SK408]
 gi|327488768|gb|EGF20567.1| peptide deformylase [Streptococcus sanguinis SK1058]
          Length = 210

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  RL+ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|15675756|ref|NP_269930.1| peptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21911220|ref|NP_665488.1| peptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28896598|ref|NP_802948.1| peptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50915023|ref|YP_060995.1| peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71904319|ref|YP_281122.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71911482|ref|YP_283032.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94989300|ref|YP_597401.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94991246|ref|YP_599346.1| peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|94993189|ref|YP_601288.1| peptide deformylase [Streptococcus pyogenes MGAS2096]
 gi|94995159|ref|YP_603257.1| peptide deformylase [Streptococcus pyogenes MGAS10750]
 gi|139474444|ref|YP_001129160.1| peptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|306826604|ref|ZP_07459909.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
 gi|56748620|sp|Q5X9V1|DEF_STRP6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56749812|sp|P68772|DEF_STRP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62901513|sp|P68771|DEF_STRP1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122986892|sp|Q1J9R7|DEF_STRPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123257906|sp|Q1JEV7|DEF_STRPD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123258119|sp|Q1JJW6|DEF_STRPC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123382136|sp|Q1J4M3|DEF_STRPF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123761380|sp|Q48R93|DEF_STRPM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512785|sp|A2RGI0|DEF_STRPG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|13622977|gb|AAK34651.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21905433|gb|AAM80291.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28811852|dbj|BAC64781.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50904097|gb|AAT87812.1| Peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71803414|gb|AAX72767.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71854264|gb|AAZ52287.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94542808|gb|ABF32857.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94544754|gb|ABF34802.1| Peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|94546697|gb|ABF36744.1| Peptide deformylase [Streptococcus pyogenes MGAS2096]
 gi|94548667|gb|ABF38713.1| Peptide deformylase [Streptococcus pyogenes MGAS10750]
 gi|134272691|emb|CAM30962.1| polypeptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|304431182|gb|EFM34186.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
          Length = 204

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++   +P LR V++ +   +  + + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           I V  R++ + + +      NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 78  IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y D   Q   I   G  A  +QHE+DH+NG+LF D ++        
Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKNPFETK 197

Query: 160 KKM 162
           +++
Sbjct: 198 EEL 200


>gi|54296635|ref|YP_123004.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris]
 gi|53750420|emb|CAH11814.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris]
          Length = 229

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 14  LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---- 68
           L+  +  I+  +N +  +LI+ M + +Y+  G+GLAA Q+    +++ + + + A     
Sbjct: 46  LKTRAENIQFPLNREDQDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 105

Query: 69  --RKNPM-VFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +  PM + INP          +   EGC S+      V R   I ++Y D        
Sbjct: 106 NAKIYPMHILINPNYEPLPQARIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQ 165

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +G  A  LQHE+DHLNG+L  D L+    D +   + +++ +R
Sbjct: 166 IENGFYARVLQHEIDHLNGVLITDRLTP---DCVQGTIEEMMTIR 207


>gi|325279635|ref|YP_004252177.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
 gi|324311444|gb|ADY31997.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
          Length = 220

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 33/172 (19%)

Query: 14  LRRVSRPIE--KINSDIMNLI-DNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAH 68
           LR+ +  +   +I +++  ++   ML  +  +   G+G+AA Q+G+  RL+ +   D   
Sbjct: 50  LRQQAIELTPGEIRTELFQVLKQRMLATVNDSADPGVGIAAPQVGISRRLIAVQRYDKPG 109

Query: 69  RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC----------- 117
                 +INP I++ S++ S+ +EGCLS+PD   +V RS  I VRY+             
Sbjct: 110 APFEF-YINPGIVSASEEQSLGKEGCLSVPDVVGEVWRSNEIVVRYIPELTSIKRMLSRE 168

Query: 118 ----------------NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                             +       G  A   QHE+DHLNGILF D + + 
Sbjct: 169 KTDSTFKFEVKVEYRNTWEPVCDTIRGFTAVIFQHEIDHLNGILFTDKMIKE 220


>gi|325688984|gb|EGD30992.1| peptide deformylase [Streptococcus sanguinis SK115]
          Length = 210

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAIAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  RL+ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLNISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|323341737|ref|ZP_08081970.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464162|gb|EFY09355.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 190

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 21/179 (11%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +V+ P+P+LR    P+   ++ +  N ++NML+ +  +               G+AA QI
Sbjct: 9   IVLDPNPVLREKCEPVSFPLSEEDRNTLENMLQYVRDSRDPELAEKYNLQPANGIAAPQI 68

Query: 53  GVLYRL--VVIDLQDHAH--RKNPMVFINPKIITFSDDFSV--YQEGCLSI-PDYRADVK 105
           GV  ++  +V+DL+D     +      +NPKI++ S       Y EGCLSI  DY   V+
Sbjct: 69  GVAKQMTALVVDLEDKHGNVKTVEYALVNPKIVSNSVKQCALSYGEGCLSIRKDYPGLVR 128

Query: 106 RSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           RS  I V   D    Q   I A  +LA  LQHE+DHLNG+LF DH+      M  K + 
Sbjct: 129 RSQRIKVLAYDMITDQRIEIVAKDILAIVLQHEIDHLNGVLFYDHIDSKDPWMAEKGLK 187


>gi|257866651|ref|ZP_05646304.1| peptide deformylase [Enterococcus casseliflavus EC30]
 gi|257872832|ref|ZP_05652485.1| peptide deformylase [Enterococcus casseliflavus EC10]
 gi|257876255|ref|ZP_05655908.1| peptide deformylase [Enterococcus casseliflavus EC20]
 gi|257800609|gb|EEV29637.1| peptide deformylase [Enterococcus casseliflavus EC30]
 gi|257806996|gb|EEV35818.1| peptide deformylase [Enterococcus casseliflavus EC10]
 gi|257810421|gb|EEV39241.1| peptide deformylase [Enterococcus casseliflavus EC20]
          Length = 187

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 20/167 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +   ++ + + L   M+            E +    G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQ----DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADV 104
           + +  R+  + +     +        V  NPKI++ S   +     EGCLS+  +    V
Sbjct: 66  LDISKRITAVLVPSSDPEKTEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R A IT+ Y D N + + +      A  +QHE+DHLNG++F DH++
Sbjct: 126 VRHARITISYYDINGKKKKVRLKNYPAIVVQHEIDHLNGVMFYDHIN 172


>gi|171778809|ref|ZP_02919871.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282455|gb|EDT47879.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 204

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR++   +   ++ + + L + M+            E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRKICDDVTFPLSDEEIILGEKMMQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           + V  R++ + + +   +  NP         V  NPK++  S  D      EGCLS+   
Sbjct: 78  LNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R + +TV Y D N +   I   G  +  +QHE+DH NGI+F D ++ 
Sbjct: 138 VEGYVVRHSRVTVEYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRINE 190


>gi|160943037|ref|ZP_02090275.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445731|gb|EDP22734.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii
           M21/2]
          Length = 136

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           + +P+    DP+ L + S P    ++ +  +L+D +    ++   +G+AA  IGV  R++
Sbjct: 1   MIQPI--MHDPLFLAQKSAPATPEDAPVARDLLDTL--TAHADGCVGMAANMIGVRKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            ++ +D       +V  NP I+  S  +   +EGCLS+   R   KR   I V+Y   + 
Sbjct: 57  AVEAED-----GYLVLFNPVILKKSGQYEA-EEGCLSLEGVR-KTKRWQSIKVQYQTMDG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +I    G  A  +QHE+DH +GIL 
Sbjct: 110 KLRIKTFTGWTAQIIQHEIDHCDGILI 136


>gi|332884559|gb|EGK04817.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836]
          Length = 190

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 12/159 (7%)

Query: 14  LRRVSRPIEK----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           LR+ S  ++      N D+  LID +   +    G+G+AA Q+G+   L +    D    
Sbjct: 32  LRKKSIDLDAKNIATNKDLQLLIDRLQMTLAVESGVGIAAPQVGIGRNLFLFLRIDQKGM 91

Query: 70  KNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
               V INP+I+  S +  +++ +GCLS+P+      R  ++ V Y D N         G
Sbjct: 92  PV-QVAINPRIVGHSAETFLFERDGCLSVPELSGTTNRYTWVDVEYYDDNGTLIKERLSG 150

Query: 129 ------LLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
                       QHE DHL GILF D L+      + K+
Sbjct: 151 GSRGGDFTGVIFQHEYDHLQGILFTDRLASAVSPKLQKE 189


>gi|307702174|ref|ZP_07639134.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|307624187|gb|EFO03164.1| peptide deformylase [Streptococcus oralis ATCC 35037]
          Length = 203

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                V  NPKI++ S   +     EGCLS+  + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++ 
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 189


>gi|15892003|ref|NP_359717.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
 gi|157827954|ref|YP_001494196.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932642|ref|YP_001649431.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|238650519|ref|YP_002916371.1| peptide deformylase [Rickettsia peacockii str. Rustic]
 gi|15619118|gb|AAL02618.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
 gi|157800435|gb|ABV75688.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907729|gb|ABY72025.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|238624617|gb|ACR47323.1| peptide deformylase [Rickettsia peacockii str. Rustic]
          Length = 224

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 11  DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--- 63
           D  +R  ++    P+   +   +++++   +     +  GLAA QIG+   +++  +   
Sbjct: 47  DKTIRIKAKTLNFPLSSEDLRDISILEKKYD--QEENCAGLAAPQIGISKCIIIFAVHED 104

Query: 64  -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                   D        ++INP       D     EGC S+ +    V R   I     D
Sbjct: 105 AELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYD 164

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            N       A+G LA  +QHE+DHLNG +F+D+++  K+ M  ++  ++ +
Sbjct: 165 INGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214


>gi|262281961|ref|ZP_06059730.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA]
 gi|262262415|gb|EEY81112.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA]
          Length = 204

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 25/184 (13%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K ++   +P LR V+  +   +  + + L + M++ ++++             G+GLAA 
Sbjct: 17  KDIIREGNPTLRAVAEEVSFPLADEDILLGEKMMQFLHNSQDPVMAEKLGLRGGVGLAAP 76

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  R++ + L        NP         V  NPKI+  S  D      EGCLS+  
Sbjct: 77  QLDISRRIIAVLLPNPEDENGNPPQDAYALKEVMYNPKIVAHSVQDAALADGEGCLSVDR 136

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           D    V R A +TV Y D + +   +   G  A  +QHE+DH+NGI+F D ++      I
Sbjct: 137 DVPGYVVRHARVTVDYFDKDGEKHRVKLKGYKAIVVQHEIDHINGIMFYDRINETDPFAI 196

Query: 159 TKKM 162
            + M
Sbjct: 197 KEGM 200


>gi|33357292|pdb|1LM4|A Chain A, Structure Of Peptide Deformylase From Staphylococcus
           Aureus At 1.45 A
 gi|33357293|pdb|1LM4|B Chain B, Structure Of Peptide Deformylase From Staphylococcus
           Aureus At 1.45 A
          Length = 194

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR+ +  +E  +  +    +  M E + ++             G+GLA
Sbjct: 14  TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 73

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104
           A QI +  R++ + + D    +    + +NPKI++ S  + +    EG LS+ D     V
Sbjct: 74  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLV 133

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 134 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 181


>gi|322374579|ref|ZP_08049093.1| peptide deformylase [Streptococcus sp. C300]
 gi|321280079|gb|EFX57118.1| peptide deformylase [Streptococcus sp. C300]
          Length = 203

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                V  NPKI++ S   +     EGCLS+  + 
Sbjct: 78  LDISKRVIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++ 
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 189


>gi|225871270|ref|YP_002747217.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047]
 gi|254767601|sp|C0M9E1|DEF_STRE4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225700674|emb|CAW95260.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047]
          Length = 204

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++   +P LR V++ +E  ++ D + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           I V  R++ + +        NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 78  IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +TV Y D + +   I   G  A  +QHE+DH+NG+LF D ++
Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189


>gi|213618841|ref|ZP_03372667.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 103

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 73/106 (68%), Gaps = 3/106 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ RA V R
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPR 103


>gi|325686575|gb|EGD28601.1| peptide deformylase [Streptococcus sanguinis SK72]
          Length = 210

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  R++ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|293365121|ref|ZP_06611838.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|291316571|gb|EFE57007.1| peptide deformylase [Streptococcus oralis ATCC 35037]
          Length = 208

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 23  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                V  NPKI++ S   +     EGCLS+  + 
Sbjct: 83  LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 142

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++ 
Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 194


>gi|259500700|ref|ZP_05743602.1| peptide deformylase [Lactobacillus iners DSM 13335]
 gi|312871379|ref|ZP_07731474.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a]
 gi|259168084|gb|EEW52579.1| peptide deformylase [Lactobacillus iners DSM 13335]
 gi|311093032|gb|EFQ51381.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a]
          Length = 181

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +V   + +LR+V + +   +N     L ++M++ + ++             G+GLAA Q
Sbjct: 3   DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 62

Query: 52  IGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107
           +G   ++  + + D   +      F+NPKII+ S   +     EGCLS+  D +  V R+
Sbjct: 63  VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 122

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 123 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 167


>gi|172058021|ref|YP_001814481.1| peptide deformylase [Exiguobacterium sibiricum 255-15]
 gi|171990542|gb|ACB61464.1| peptide deformylase [Exiguobacterium sibiricum 255-15]
          Length = 179

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 17/166 (10%)

Query: 5   PLVIFPDPILRRVSRPIE----KINSDIMNLI---------DNMLEVMYSTDGIGLAAVQ 51
            +V    P L   S  +     + + + M L+         D + E      GIGLAA Q
Sbjct: 6   EIVREDVPSLHERSVDVTFPLSEEDKETMRLMMEYLANSQDDELAEKYDLRSGIGLAAPQ 65

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSA 108
           IGV  R+  I LQD        ++ NPKI++ S +  +    EGCLS+  +    V R  
Sbjct: 66  IGVNKRMFAIRLQDGDDILEFGIY-NPKIVSHSVEQTYLAGGEGCLSVDREVEGHVPRYM 124

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            IT+  +D N     +   GL A   QHE DHL+GI+F D +   +
Sbjct: 125 RITLSGIDHNGNPVKLRLKGLKAVVCQHEYDHLDGIMFYDRIDPKE 170


>gi|288904432|ref|YP_003429653.1| polypeptide deformylase [Streptococcus gallolyticus UCN34]
 gi|306830465|ref|ZP_07463635.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325977428|ref|YP_004287144.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731157|emb|CBI12705.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34]
 gi|304427490|gb|EFM30592.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177356|emb|CBZ47400.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 204

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + ML            E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDEEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           + +  R++ + + +   +  NP         V  NPK++  S  D      EGCLS+   
Sbjct: 78  LDISKRIIAVLVPNPEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R + +TV Y D N +   I   G  +  +QHE+DH NGI+F D +       I 
Sbjct: 138 VEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRIDEKNPFAIK 197

Query: 160 KKM 162
           + M
Sbjct: 198 EGM 200


>gi|125718849|ref|YP_001035982.1| peptide deformylase [Streptococcus sanguinis SK36]
 gi|125498766|gb|ABN45432.1| Peptide deformylase, putative [Streptococcus sanguinis SK36]
 gi|324996009|gb|EGC27920.1| peptide deformylase [Streptococcus sanguinis SK678]
          Length = 210

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  RL+ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|68171495|ref|ZP_00544878.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657592|ref|YP_507728.1| putative polypeptide deformylase [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999078|gb|EAM85746.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599049|gb|ABD44518.1| putative polypeptide deformylase [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 194

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 16/161 (9%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63
           L  +S PIEKI+ +I+ L ++M++VM  +  +GL+AVQ+G   R+ +I++          
Sbjct: 15  LHAISHPIEKIDQEIIALANDMMKVMEHSKTVGLSAVQLGNHSRMFIINMFSGLFDIAQD 74

Query: 64  -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDC 117
                  H+     M+ INP++++FS +     EGC S   Y   ++ R   + +RY D 
Sbjct: 75  IKVLSGHHSLHGKNMICINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDLRYTDL 134

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                I+   G L+ C+QHELDHLNGIL  + +  +K + +
Sbjct: 135 LGNECIVRVYGWLSRCIQHELDHLNGILLANVVDNIKNNCV 175


>gi|66806299|ref|XP_636872.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4]
 gi|60465273|gb|EAL63366.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4]
          Length = 243

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 55/204 (26%)

Query: 4   KPLVIFPDPILRRVSRPI--EKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           K +V   + +LR  + P   E++N    +  L++ M + M    G G+AA QIGV  +L 
Sbjct: 8   KNIVKVGNKLLREKALPWSKEELNDVRRVEKLLEKMYKEMKDCTGTGIAAPQIGVNKQLF 67

Query: 60  VIDLQDHAHRKNP----MVFINPKI----------------------------------- 80
           +++L        P      F NPKI                                   
Sbjct: 68  LLELPSQEGLNCPNFPLTAFFNPKIKLIDQDVTKPSRRTITDFKKFLHGSEKLLNLSQYK 127

Query: 81  ------------ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128
                       I   ++     E CLS+P+  A V+RS    + ++D   + +II ADG
Sbjct: 128 TKFQTEESTLPTIPTENNTITMLESCLSVPNIFAHVQRSKRCIITFLDITGKERIIEADG 187

Query: 129 LLATCLQHELDHLNGILFIDHLSR 152
           +LA C QHE DHL G +FID + +
Sbjct: 188 ILAACFQHEYDHLLGKIFIDRIDK 211


>gi|309807220|ref|ZP_07701192.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b]
 gi|308166358|gb|EFO68565.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b]
          Length = 184

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQI 52
           +V   + +LR+V + +   +N     L ++M++ + ++             G+GLAA Q+
Sbjct: 7   IVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQV 66

Query: 53  GVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRSA 108
           G   ++  + + D   +      F+NPKII+ S   +     EGCLS+  D +  V R+ 
Sbjct: 67  GESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAY 126

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 127 KLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|308070801|ref|YP_003872406.1| peptide deformylase (PDF) [Paenibacillus polymyxa E681]
 gi|305860080|gb|ADM71868.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681]
          Length = 193

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K +V   +PILR    P+   ++ D +  +  ML+ + ++             G+GL+A 
Sbjct: 12  KDIVREGEPILRTKVDPVCLPLSEDDLQQMQWMLDYLKNSQNEELAGRYDLRPGVGLSAN 71

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRA-DVKRS 107
           Q+G+  R+  I  +D        +F NPK+++ S      +  EGCLS+  Y A  V R 
Sbjct: 72  QVGLNKRMCAIYYEDGDKTVEYALF-NPKLVSHSTSMIYLEQGEGCLSVDRYVAGYVPRY 130

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             I ++    +   +++   G  A  +QHE+DHL+GI+F D ++  
Sbjct: 131 EKIRIKATLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRINPE 176


>gi|320547748|ref|ZP_08042032.1| peptide deformylase [Streptococcus equinus ATCC 9812]
 gi|320447508|gb|EFW88267.1| peptide deformylase [Streptococcus equinus ATCC 9812]
          Length = 204

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR+V   +   ++ + + L + M+            E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRQVCDDVTFPLSDEEIILGEKMMQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           + V  R++ + + +   +  NP         V  NPK++  S  D      EGCLS+   
Sbjct: 78  LNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R + +TV Y + N +   +   G  +  +QHE+DH NGI+F D +  
Sbjct: 138 VEGYVVRHSRVTVEYFNKNGEKHRVKLKGYNSIVVQHEIDHTNGIMFYDRIDE 190


>gi|324989743|gb|EGC21686.1| peptide deformylase [Streptococcus sanguinis SK353]
 gi|327468374|gb|EGF13859.1| peptide deformylase [Streptococcus sanguinis SK330]
          Length = 210

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPIMAEKMGLRGGVGLAAP 82

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  RL+ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|300854965|ref|YP_003779949.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300435080|gb|ADK14847.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 160

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYS-----TDGIGLAAVQIGVL 55
           + K +++  +  L + S P+EK +   I   + ++ + +         G  +AA QIGV 
Sbjct: 1   MIKEILLLGNDALYKKSLPVEKEDMDSIKETVLDLHDTLIDFRKKYNAGRAIAAPQIGVF 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ + +        P+VFINP +   + +     + C+S P+    VKR    ++ Y 
Sbjct: 61  KRLIYMYID------KPIVFINPVLKFDNKEMMDVMDDCMSFPNLLVKVKRYKECSIIYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           D N   + +   G L+  +QHE DHL+GIL        K   I  K
Sbjct: 115 DINFADKTLKFKGDLSELIQHEYDHLDGILATMRAIDNKSFYIKSK 160


>gi|315612890|ref|ZP_07887801.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
 gi|315315000|gb|EFU63041.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
          Length = 208

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 23  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                V  NPKI++ S   +     EGCLS+  + 
Sbjct: 83  LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 142

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++ 
Sbjct: 143 PGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 194


>gi|328944870|gb|EGG39030.1| peptide deformylase [Streptococcus sanguinis SK1087]
          Length = 210

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNPM--------VFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  RL+ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLDISKRLIAVLVPNPEDEEGNPTKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|309807903|ref|ZP_07701833.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a]
 gi|308168852|gb|EFO70940.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a]
          Length = 184

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +V   + +LR+V + +   +N     L ++M++ + ++             G+GLAA Q
Sbjct: 6   DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107
           +G   ++  + + D   +      F+NPKII+ S   +     EGCLS+  D +  V R+
Sbjct: 66  VGESVQVAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|302672051|ref|YP_003832011.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316]
 gi|302396524|gb|ADL35429.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316]
          Length = 136

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + K +V   DP  L++ S P  + +     +I ++L+ + +     +G+AA  IGV  R+
Sbjct: 1   MVKQIVK--DPFFLQQKSEPATEAD---KQVIQDLLDTLRANQDRCVGMAANMIGVKKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +            +NP+I   S ++   +E CLS+   R    R   I V Y+D +
Sbjct: 56  IVVAMGPFH-----FAMVNPEITKKSGEYQT-EESCLSLEGVR-PCTRYKEIEVDYLDQD 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q        A  +QHE+DH  GIL 
Sbjct: 109 FKPQHGKYKDFTAQIIQHEIDHFEGILI 136


>gi|329921309|ref|ZP_08277747.1| peptide deformylase [Lactobacillus iners SPIN 1401G]
 gi|328934601|gb|EGG31105.1| peptide deformylase [Lactobacillus iners SPIN 1401G]
          Length = 184

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +V   + +LR+V + +   +N     L ++M++ + ++             G+GLAA Q
Sbjct: 6   DIVRDGNHVLRQVGKELTFPLNDKYKQLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107
           +G   ++  + + D   +      F+NPKII+ S   +     EGCLS+  D +  V R+
Sbjct: 66  VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|195978856|ref|YP_002124100.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|238689838|sp|B4U576|DEF_STREM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|195975561|gb|ACG63087.1| peptide deformylase Pdf [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 204

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 25/172 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++   +P LR V++ +E  ++ D + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           I V  R++ + +        NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 78  IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
               V R A +TV Y D + +   I   G  A  +QHE+DH+NG+LF D ++
Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189


>gi|34580961|ref|ZP_00142441.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|28262346|gb|EAA25850.1| polypeptide deformylase [Rickettsia sibirica 246]
          Length = 224

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 11  DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--- 63
           D  +R  ++    P+   +   +++++   +     +  GLAA QIG+   +++  +   
Sbjct: 47  DKTIRIKAKTLNFPLSSEDLRDISILEKKYD--QEDNCAGLAAPQIGISKCIIIFAVHED 104

Query: 64  -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                   D        ++INP       D     EGC S+ +    V R   I     D
Sbjct: 105 AELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYD 164

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            N       A+G LA  +QHE+DHLNG +F+D+++  K+ M  ++  ++ +
Sbjct: 165 INGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214


>gi|320169511|gb|EFW46410.1| polypeptide deformylase [Capsaspora owczarzaki ATCC 30864]
          Length = 196

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + L+   +  LR  SR +      +S    LID M+  M  T+G+G+AAVQ+G    +  
Sbjct: 19  RGLLAIGEDSLRLPSRQVSLDELRSSATQALIDRMIATMRRTEGVGIAAVQLGDNRAIAC 78

Query: 61  IDLQ--------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           I+                         V +NP+++  S D     EGCLS+P  +A V R
Sbjct: 79  IEFTAKHLAEATPEMAATHKMEAVPLTVMVNPRVLRASSDLVEGAEGCLSVPGMQAIVFR 138

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + +  +D N   Q +   G  A    HE+DHL G LF D + R
Sbjct: 139 PRHVAIDCLDRNGAPQTLKLSGWSARIAMHEVDHLKGELFTDKMER 184


>gi|332365804|gb|EGJ43561.1| peptide deformylase [Streptococcus sanguinis SK355]
          Length = 210

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAIAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  RL+ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|332365599|gb|EGJ43359.1| peptide deformylase [Streptococcus sanguinis SK1059]
          Length = 210

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAIAEEVSFPLSDQEIILGKKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  RL+ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|327462775|gb|EGF09097.1| peptide deformylase [Streptococcus sanguinis SK1057]
          Length = 210

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 82

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  RL+ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|302191390|ref|ZP_07267644.1| peptide deformylase [Lactobacillus iners AB-1]
 gi|309809281|ref|ZP_07703150.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D]
 gi|312872368|ref|ZP_07732438.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1]
 gi|312873953|ref|ZP_07733989.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d]
 gi|312875523|ref|ZP_07735526.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b]
 gi|315653465|ref|ZP_07906386.1| peptide deformylase [Lactobacillus iners ATCC 55195]
 gi|325911485|ref|ZP_08173896.1| peptide deformylase [Lactobacillus iners UPII 143-D]
 gi|325912854|ref|ZP_08175232.1| peptide deformylase [Lactobacillus iners UPII 60-B]
 gi|308170394|gb|EFO72418.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D]
 gi|311089034|gb|EFQ47475.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b]
 gi|311090502|gb|EFQ48910.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d]
 gi|311092191|gb|EFQ50565.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1]
 gi|315489156|gb|EFU78797.1| peptide deformylase [Lactobacillus iners ATCC 55195]
 gi|325476685|gb|EGC79840.1| peptide deformylase [Lactobacillus iners UPII 143-D]
 gi|325477847|gb|EGC80981.1| peptide deformylase [Lactobacillus iners UPII 60-B]
          Length = 184

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +V   + +LR+V + +   +N     L ++M++ + ++             G+GLAA Q
Sbjct: 6   DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107
           +G   ++  + + D   +      F+NPKII+ S   +     EGCLS+  D +  V R+
Sbjct: 66  VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|302024517|ref|ZP_07249728.1| peptide deformylase [Streptococcus suis 05HAS68]
          Length = 155

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 12/140 (8%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFSD 85
           M E M    G+GLAA QI V  R++ + +        NP         V  NPKI+  S 
Sbjct: 12  MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSV 71

Query: 86  DFSVYQ--EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
             +  +  EGCLS+  + +  V R A +TV YMD N +   I   G  A  +QHE+DHLN
Sbjct: 72  QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 131

Query: 143 GILFIDHLSRLKRDMITKKM 162
           GI+F D +       + + M
Sbjct: 132 GIMFYDRIDPEHPFAVKEGM 151


>gi|241667120|ref|ZP_04754698.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254875674|ref|ZP_05248384.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254841695|gb|EET20109.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 201

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I +S+I N+I  M E M   +GIGLAA QIG  +++ +I+  D ++ 
Sbjct: 13  NQVLYQKCKPVTDIQSSEIQNIIAEMREKM-QGNGIGLAANQIGYPHQIFMIEF-DSSNA 70

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLS-IPDYRADVKRSAFITVRYMDCNAQ 120
           + P+        VFINPKI   S+    +  GCLS +   R  +     I     + + +
Sbjct: 71  RYPLNFDSVPFQVFINPKITKASEKRVGFWHGCLSALGGKRGKLATYKEIEYEAYNQHGK 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 D + A   QHE +HL G +++D
Sbjct: 131 KITGKLDSIAAVIFQHEFNHLLGSVYVD 158


>gi|38049247|gb|AAR10418.1| putative peptide deformylase [Enterococcus faecium]
          Length = 160

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 3/113 (2%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DY 100
           G+GL+A QIG+  R+ V  L D   +K+    INPKII+ S         EGCLS+  D 
Sbjct: 35  GVGLSANQIGLNKRMFVAYLTDEKGKKHEYTLINPKIISHSVSMIYLSPSEGCLSVDRDI 94

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +  V R   I V+  +   +  ++   G  +  +QHE+DHLNGI+F + +++ 
Sbjct: 95  KGFVPRYERIKVKGFNLEGEEIVLKLKGYSSIVIQHEIDHLNGIMFYERINKE 147


>gi|325567244|ref|ZP_08143911.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
 gi|325158677|gb|EGC70823.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755]
          Length = 187

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 20/167 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +   ++ + + L   M+            E +    G+GLAA Q
Sbjct: 6   DIIREGNPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQ----DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADV 104
           + +  R+  + +     + A      V  NPKI++ S   +     EGCLS+  +    V
Sbjct: 66  LDISKRITAVLVPSSDPEKAEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            R A IT+ Y D N + + +      A  +QHE+DHLNG++F +H++
Sbjct: 126 VRHARITISYYDINGKKKKVRLKNYPAIVIQHEIDHLNGVMFYNHIN 172


>gi|229918497|ref|YP_002887143.1| peptide deformylase [Exiguobacterium sp. AT1b]
 gi|229469926|gb|ACQ71698.1| peptide deformylase [Exiguobacterium sp. AT1b]
          Length = 179

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 17/166 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48
             K ++   D  LR  S  +     ++ + L+D M             E      G+G+A
Sbjct: 3   TMKDVIREGDERLRARSTEVPIPPTAEDLALLDEMETFLVNSQDPEMSEKYELRGGVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDY-RADVK 105
           A Q+GV  R   + LQ+        +F NPKI + S + +     EGCLS+    + +V 
Sbjct: 63  APQLGVNRRFFTVLLQEEEETFKLSIF-NPKITSHSVEQTFLNGGEGCLSVDRVVKGNVP 121

Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R   IT+   D + +   +   G+ A   QHELDHL+GI+F D ++
Sbjct: 122 RFRRITLEGFDRDGKPIKLRLRGMRAVVCQHELDHLDGIMFYDRIN 167


>gi|51247225|pdb|1Q1Y|A Chain A, Crystal Structures Of Peptide Deformylase From
           Staphylococcus Aureus Complexed With Actinonin
          Length = 191

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR+ +  +E  +  +    +  M E + ++             G+GLA
Sbjct: 3   TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104
           A QI +  R++ + + D    +    + +NPKI++ S  + +    EG LS+ D     V
Sbjct: 63  APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +
Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170


>gi|77024073|gb|ABA55507.1| chloroplast peptide deformylase [Isochrysis galbana]
          Length = 200

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P P+LR  +  +   +  +  L   M  +MY++ G+GLAA Q+G+  RL+V + + 
Sbjct: 86  ILEYPHPLLRAPNSEVVSFDDSLRKLTREMFAIMYASRGVGLAAPQLGINKRLMVFNPEG 145

Query: 66  HAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
              +  + +V  NP+I+         +EGCLS P + ADV R+ +I V +     
Sbjct: 146 KKEKWMSEVVLCNPRIVERGAGKETDEEGCLSFPGFTADVDRAGWIQVEFQTGRG 200


>gi|52840852|ref|YP_094651.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52627963|gb|AAU26704.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 237

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 14  LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---- 68
           L+  +  I+  ++ +  +LI+ M + +Y+  G+GLAA Q+    +++ + + + A     
Sbjct: 54  LKTRAENIQFPLSREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 113

Query: 69  --RKNPM-VFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +  PM + INP          +   EGC S+      V R   I ++Y D        
Sbjct: 114 NAKIYPMHILINPNYEPLPQARIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQ 173

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +G  A  LQHE+DHLNG+L  D L+    D +   + +++ +R
Sbjct: 174 IENGFYARVLQHEIDHLNGVLITDRLTP---DCVQGTIEEMMTIR 215


>gi|309803948|ref|ZP_07698031.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d]
 gi|308163950|gb|EFO66214.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d]
          Length = 184

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            +V   + +LR+V + +   +N     L ++M++ + ++             G+GLAA Q
Sbjct: 6   DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52  IGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-DYRADVKRS 107
           +G   ++  + + D   +      F+NPKII+ S   +     EGCLS+  D +  V R+
Sbjct: 66  VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             + ++Y   + + + I   G  A    HE+DHLNG LF D + +
Sbjct: 126 YKLKIKYQTVDGEQRQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170


>gi|294660577|ref|NP_853423.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)]
 gi|298286800|sp|Q7NAK8|DEF_MYCGA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|284812240|gb|AAP56991.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)]
 gi|284930920|gb|ADC30859.1| peptide deformylase [Mycoplasma gallisepticum str. R(high)]
          Length = 196

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53
           LV   +P +R V   ++  ++ +++++ID ML  +  +            GIG+AA Q+G
Sbjct: 12  LVTDDNPKMREVCTEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFI 110
           +  R   +   D   +++  + INP+ I  S    +    EGCLS+P D    V RS  +
Sbjct: 72  LNQRFFYVHFTDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131

Query: 111 TVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++  D    +   I A GLLA CLQHE+DHL G  + D ++ +K
Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176


>gi|328783477|ref|XP_623373.2| PREDICTED: hypothetical protein LOC409613 isoform 2 [Apis
           mellifera]
          Length = 328

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 16/152 (10%)

Query: 30  NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMV-------------F 75
            ++D++ E++   D +GLAA QIG+ ++L V+++ ++     +P +             F
Sbjct: 172 QILDHLYELLKKNDTVGLAAPQIGLPWQLFVVEMTEESIEHIHPYIRKCYGITPHPLTYF 231

Query: 76  INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           INPK+   + +  V+ E C SI  Y A+V R   + +  ++   +   + A+G LA  + 
Sbjct: 232 INPKMNIINSEEVVHFETCASIDCYYAEVPRPKEVQIEALNKFGESFSMKAEGWLARIIH 291

Query: 136 HELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           HE+DHL G L+ D +          K  K+ +
Sbjct: 292 HEMDHLKGHLYTDRMFPFS--FNYGKWEKIDK 321


>gi|306825519|ref|ZP_07458859.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432457|gb|EFM35433.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 208

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 24/179 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + N     M E M    G+GLAA Q
Sbjct: 23  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQ 82

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIPDY- 100
           + +  R++ + + +                V  NPKI++ S   +     EGCLS+    
Sbjct: 83  LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRVV 142

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++      I 
Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAIK 201


>gi|73666812|ref|YP_302828.1| formylmethionine deformylase [Ehrlichia canis str. Jake]
 gi|72393953|gb|AAZ68230.1| Formylmethionine deformylase [Ehrlichia canis str. Jake]
          Length = 194

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 16/161 (9%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63
           L  +S PIEKI+ +I+ L ++M++VM  +  +GL+AVQ+G   R+  I++          
Sbjct: 15  LHAISHPIEKIDQEIIALANDMMKVMEDSKTVGLSAVQLGNHSRMFTINMFSGLFDVTQD 74

Query: 64  -----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDC 117
                  H+     MV INP++++FS +     EGC S   Y   ++ R   +  RY D 
Sbjct: 75  IKVLSGHHSLHGKNMVCINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDFRYTDL 134

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                ++   G L+ C+QHELDHLNGIL  + +  +K + +
Sbjct: 135 LGNKCVVRVYGWLSRCIQHELDHLNGILLANVVDNIKNNCV 175


>gi|23396567|sp|Q92JI7|DEF2_RICCN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
          Length = 202

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 11  DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--- 63
           D  +R  ++    P+   +   +++++   +     +  GLAA QIG+   +++  +   
Sbjct: 25  DKTIRIKAKTLNFPLSSEDLRDISILEKKYD--QEENCAGLAAPQIGISKCIIIFAVHED 82

Query: 64  -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                   D        ++INP       D     EGC S+ +    V R   I     D
Sbjct: 83  AELKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYD 142

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            N       A+G LA  +QHE+DHLNG +F+D+++  K+ M  ++  ++ +
Sbjct: 143 INGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 192


>gi|260834959|ref|XP_002612477.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae]
 gi|229297854|gb|EEN68486.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae]
          Length = 188

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 17/163 (10%)

Query: 6   LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   +PILR  +  ++  N    +   +++ +++VM     +GL+A Q+GV  +++ ++
Sbjct: 12  VVPVGNPILRGQALAVDHRNIKSKETQEVLEQLVKVMRKKGAVGLSAPQVGVGLQIIAVE 71

Query: 63  LQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
                    P               +FINPK+        V+ EGC S+P ++A+V R  
Sbjct: 72  CTRKQLDLVPQEIRKIREMQEFPLKIFINPKLKVTDYSTVVFPEGCESLPGFQANVPRYY 131

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            + +  +D           G  A  LQHE++HL G L+ID + 
Sbjct: 132 GVNITGLDREGMPVAWQVTGWPARILQHEVEHLRGDLYIDIMD 174


>gi|313889599|ref|ZP_07823243.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122026|gb|EFR45121.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 204

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 27/187 (14%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGL 47
           M    ++   +P LR+ ++ +   ++ + + L + M++ +  +             G+GL
Sbjct: 16  MA--DIIREGNPTLRQKAQEVALPLSDEDIILGEKMMQFLKHSQDPVMAEKLDLRGGVGL 73

Query: 48  AAVQIGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFS--DDFSVYQEGCLS 96
           AA Q+ +  R++ + + +      NP         V  NPKI+  S  D      EGCLS
Sbjct: 74  AAPQLDISKRVIAVLVPNMEDSEGNPPKEAYSLQEVMYNPKIVAHSVQDAALAEGEGCLS 133

Query: 97  IPD-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +       V R + +TV Y + + + Q I   G  A  +QHE+DH+NGI+F D ++    
Sbjct: 134 VDRLIEGYVVRHSRVTVDYYNKDGEKQRIKLKGYNAIVVQHEIDHINGIMFYDRINEADP 193

Query: 156 DMITKKM 162
             I + M
Sbjct: 194 FAINEGM 200


>gi|323350520|ref|ZP_08086182.1| peptide deformylase [Streptococcus sanguinis VMC66]
 gi|322123202|gb|EFX94887.1| peptide deformylase [Streptococcus sanguinis VMC66]
          Length = 210

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPIMAEKMGLRGGVGLAAP 82

Query: 51  QIGVLYRLVVIDLQDHAHRKN---------PMVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  RL+ + + +    +            +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLDISKRLIAVLVPNPEDEEGSPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|15903353|ref|NP_358903.1| peptide deformylase [Streptococcus pneumoniae R6]
 gi|116516110|ref|YP_816751.1| peptide deformylase [Streptococcus pneumoniae D39]
 gi|148984798|ref|ZP_01818051.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|148992660|ref|ZP_01822328.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|148997485|ref|ZP_01825090.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|149002851|ref|ZP_01827777.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|149019400|ref|ZP_01834762.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|168483932|ref|ZP_02708884.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00]
 gi|168489617|ref|ZP_02713816.1| peptide deformylase [Streptococcus pneumoniae SP195]
 gi|168493357|ref|ZP_02717500.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06]
 gi|168575913|ref|ZP_02721828.1| peptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|169833382|ref|YP_001694872.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|182684413|ref|YP_001836160.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|221232181|ref|YP_002511334.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225854897|ref|YP_002736409.1| peptide deformylase [Streptococcus pneumoniae JJA]
 gi|225859217|ref|YP_002740727.1| peptide deformylase [Streptococcus pneumoniae 70585]
 gi|237651106|ref|ZP_04525358.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974]
 gi|237821019|ref|ZP_04596864.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2]
 gi|303254384|ref|ZP_07340491.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|303259052|ref|ZP_07345031.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|303261732|ref|ZP_07347679.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|303264405|ref|ZP_07350325.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|303267527|ref|ZP_07353375.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|303269331|ref|ZP_07355104.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|307068106|ref|YP_003877072.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|39930890|sp|Q8DP79|DEF_STRR6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122278363|sp|Q04JP7|DEF_STRP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238688366|sp|B1ICN7|DEF_STRPI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238691170|sp|B2IQS1|DEF_STRPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767602|sp|C1C851|DEF_STRP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767603|sp|B8ZL02|DEF_STRPJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767605|sp|C1CF38|DEF_STRZJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|15458954|gb|AAL00114.1| Peptide deformylase, N-formylmethionylaminoacyl-tRNA deformylase
           [Streptococcus pneumoniae R6]
 gi|15858846|gb|AAK13238.1| peptide deformylase DefB [Streptococcus pneumoniae]
 gi|116076686|gb|ABJ54406.1| peptide deformylase [Streptococcus pneumoniae D39]
 gi|147756540|gb|EDK63581.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|147759145|gb|EDK66139.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|147922820|gb|EDK73936.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|147928677|gb|EDK79691.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|147931270|gb|EDK82249.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|168995884|gb|ACA36496.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|172042804|gb|EDT50850.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00]
 gi|182629747|gb|ACB90695.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|183571999|gb|EDT92527.1| peptide deformylase [Streptococcus pneumoniae SP195]
 gi|183576731|gb|EDT97259.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06]
 gi|183578335|gb|EDT98863.1| peptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|220674642|emb|CAR69211.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225721908|gb|ACO17762.1| peptide deformylase [Streptococcus pneumoniae 70585]
 gi|225722966|gb|ACO18819.1| peptide deformylase [Streptococcus pneumoniae JJA]
 gi|301800306|emb|CBW32932.1| polypeptide deformylase [Streptococcus pneumoniae OXC141]
 gi|301802184|emb|CBW34930.1| polypeptide deformylase [Streptococcus pneumoniae INV200]
 gi|302598631|gb|EFL65670.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|302637312|gb|EFL67800.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|302639995|gb|EFL70451.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|302641161|gb|EFL71535.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|302642928|gb|EFL73227.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|302646217|gb|EFL76444.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|306409643|gb|ADM85070.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|332073763|gb|EGI84242.1| peptide deformylase [Streptococcus pneumoniae GA17570]
 gi|332073793|gb|EGI84271.1| peptide deformylase [Streptococcus pneumoniae GA41301]
 gi|332200898|gb|EGJ14970.1| peptide deformylase [Streptococcus pneumoniae GA41317]
 gi|332201894|gb|EGJ15964.1| peptide deformylase [Streptococcus pneumoniae GA47368]
          Length = 203

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                +  NPKI++ S   +     EGCLS+  + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189


>gi|313683120|ref|YP_004060858.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994]
 gi|313155980|gb|ADR34658.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994]
          Length = 273

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 78/159 (49%), Gaps = 5/159 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K L+ +PD  +R +S  I K + ++  L++NM + M   +   ++A+QI + Y  +++
Sbjct: 1   MIKELITYPDERIRYISADIRKYDDELFELLENMRDTMEHHELNAISAIQIAIPYSAILL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                   +N +  IN ++I+      + +        + A +KR   I V Y + N + 
Sbjct: 61  -----KEGENILELINARLISTEGVEEIDEVSPYFPKGFSAKIKRYGKIKVVYENRNGEL 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           + + A+G L+  LQ ++D L G   +D L + +R    +
Sbjct: 116 RHLDAEGELSQRLQRQIDFLFGGTLLDKLDKKERQKAEE 154


>gi|310644037|ref|YP_003948795.1| peptide deformylase 2 [Paenibacillus polymyxa SC2]
 gi|309248987|gb|ADO58554.1| Peptide deformylase 2 [Paenibacillus polymyxa SC2]
          Length = 188

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 17/166 (10%)

Query: 4   KPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K +V   +PILR+   P+   ++ + +  +  ML+ + ++             G+GL+A 
Sbjct: 7   KDIVREGEPILRKKVDPVCLPLSEEDLQQMQWMLDYLKNSQNEELATRYELRPGVGLSAN 66

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDY-RADVKRS 107
           Q+G+  R+  I  +D        +F NPK+++ S      +  EGCLS+  Y    V R 
Sbjct: 67  QVGLNKRMCAIYYEDGDQTVEYALF-NPKLVSHSTSMIYLEQGEGCLSVDRYIPGYVPRY 125

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             I ++    +   +++   G  A  +QHE+DHL+GI+F D ++  
Sbjct: 126 EKIRIKANLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRINPE 171


>gi|289164094|ref|YP_003454232.1| polypeptide deformylase [Legionella longbeachae NSW150]
 gi|288857267|emb|CBJ11094.1| putative polypeptide deformylase [Legionella longbeachae NSW150]
          Length = 222

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 17/182 (9%)

Query: 2   VKKPLVIFPDP----ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           ++  +V    P    +L+  ++ +   ++    +LI  M   +    G+GLAA Q+    
Sbjct: 22  MELKIVTIEQPEYHRVLKHQAQEVRFPLSQADKDLIAAMSSKLQKLGGVGLAAPQVNFPR 81

Query: 57  RLVVIDLQ-------DHAHRKNPM-VFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRS 107
           R++ I +        D+     PM + INP              EGC S+      V R 
Sbjct: 82  RIIAIYIPEEAALLRDNIKSFYPMHIMINPSYTPVEGSAIQHDFEGCYSVASKSGKVPRY 141

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I V Y D   Q      +G  +  LQHE+DHLNG L ID L+    D +   + +++ 
Sbjct: 142 EQINVSYYDELGQFHRQTEEGFYSRVLQHEIDHLNGFLIIDRLTP---DCVQGSVEEMMT 198

Query: 168 LR 169
           LR
Sbjct: 199 LR 200


>gi|148360734|ref|YP_001251941.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|296106200|ref|YP_003617900.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|148282507|gb|ABQ56595.1| polypeptide deformylase [Legionella pneumophila str. Corby]
 gi|295648101|gb|ADG23948.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
          Length = 200

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 14  LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---- 68
           L+  +  I+  +N +  +LI+ M + +Y+  G+GLAA Q+    +++ + + + A     
Sbjct: 17  LKTRAENIQFPLNREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 76

Query: 69  --RKNPM-VFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +  PM + INP          +   EGC S+      V R   I ++Y D        
Sbjct: 77  NAKIFPMHILINPNYEPLPHTRIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQ 136

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +G  A  LQHE+DHLNG+L  D L+    D +   + +++ +R
Sbjct: 137 IENGFYARVLQHEIDHLNGVLITDRLTP---DCVQGTIEEMMTIR 178


>gi|325697445|gb|EGD39331.1| peptide deformylase [Streptococcus sanguinis SK160]
 gi|332359962|gb|EGJ37776.1| peptide deformylase [Streptococcus sanguinis SK1056]
          Length = 210

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50
           K ++   +P LR ++  +   ++   + L + M+            E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVTAEKMGLRGGVGLAAP 82

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  RL+ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|332359300|gb|EGJ37121.1| peptide deformylase [Streptococcus sanguinis SK49]
          Length = 210

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 24  DIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 83

Query: 52  IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99
           + +  RL+ + +        NP         +  NPKI+  S  D      EGCLS+  +
Sbjct: 84  LDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDRE 143

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 144 VPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|307706823|ref|ZP_07643628.1| peptide deformylase [Streptococcus mitis SK321]
 gi|307617908|gb|EFN97070.1| peptide deformylase [Streptococcus mitis SK321]
          Length = 203

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 24/173 (13%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 17  KDIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 76

Query: 51  QIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-D 99
           Q+ +  R++ + + +                +  NPKI++ S   +     EGCLS+  +
Sbjct: 77  QLDISKRIIAVLVPNIVEEGETPEEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRN 136

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 137 VPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189


>gi|307702002|ref|ZP_07639010.1| peptide deformylase [Streptococcus mitis NCTC 12261]
 gi|307616647|gb|EFN95836.1| peptide deformylase [Streptococcus mitis NCTC 12261]
          Length = 203

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 24/173 (13%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 17  KDIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAP 76

Query: 51  QIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-D 99
           Q+ +  R++ + + +                +  NPKI++ S   +     EGCLS+  +
Sbjct: 77  QLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRN 136

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 137 VPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189


>gi|73662866|ref|YP_301647.1| peptide deformylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495381|dbj|BAE18702.1| putative N-formylmethionyl-tRNA deformylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 162

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LV    PIL +    + K + ++  L+ ++ + MY  +   + A QIGV  ++ +
Sbjct: 1   MTIKQLVTSKHPILNKSIPDVTKFDENLEQLLLDLEDTMYDVEASAICAPQIGVAQKVAM 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+         +  INP+II+ SD      EG +SIP+   +V+RS  I V+  D    
Sbjct: 61  IDM----EMDGLLQLINPQIISESDTKVTDLEGSISIPNVYGEVERSKMIVVKSNDKKGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              + A   +A  + H +DH  G LF + + + 
Sbjct: 117 EVEMTAYDDIARMILHMIDHFEGRLFTERVEKF 149


>gi|21730762|pdb|1LMH|A Chain A, Crystal Structure Of S. Aureus Peptide Deformylase
          Length = 184

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 17/168 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K ++    P LR+ +  +E  +  +    +    E + ++             G+GLA
Sbjct: 3   TXKDIIRDGHPTLRQKAAELELPLTKEEKETLIAXREFLVNSQDEEIAKRYGLRSGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADV 104
           A QI +  R + + + D    +      +NPKI++ S  + +    EGCLS+ D     V
Sbjct: 63  APQINISKRXIAVLIPDDGSGKSYDYXLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            R   IT++  D       +   G  A   QHE+DHLNG+ F DH+ +
Sbjct: 123 HRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVXFYDHIDK 170


>gi|270157521|ref|ZP_06186178.1| polypeptide deformylase [Legionella longbeachae D-4968]
 gi|269989546|gb|EEZ95800.1| polypeptide deformylase [Legionella longbeachae D-4968]
          Length = 219

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 17/182 (9%)

Query: 2   VKKPLVIFPDP----ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           ++  +V    P    +L+  ++ +   ++    +LI  M   +    G+GLAA Q+    
Sbjct: 19  MELKIVTIEQPEYHRVLKHQAQEVRFPLSQADKDLIAAMSSKLQKLGGVGLAAPQVNFPR 78

Query: 57  RLVVIDLQ-------DHAHRKNPM-VFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRS 107
           R++ I +        D+     PM + INP              EGC S+      V R 
Sbjct: 79  RIIAIYIPEEAALLRDNIKSFYPMHIMINPSYTPVEGSAIQHDFEGCYSVASKSGKVPRY 138

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I V Y D   Q      +G  +  LQHE+DHLNG L ID L+    D +   + +++ 
Sbjct: 139 EQINVSYYDELGQFHRQTEEGFYSRVLQHEIDHLNGFLIIDRLTP---DCVQGSVEEMMT 195

Query: 168 LR 169
           LR
Sbjct: 196 LR 197


>gi|322388152|ref|ZP_08061756.1| peptide deformylase [Streptococcus infantis ATCC 700779]
 gi|321140824|gb|EFX36325.1| peptide deformylase [Streptococcus infantis ATCC 700779]
          Length = 203

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 24/183 (13%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K ++   +P LR V+  +   ++   + L + M++ +  +             G+GLAA 
Sbjct: 17  KDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAAP 76

Query: 51  QIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIPD- 99
           Q+ +  R++ + + +                V  NPKI++ S   +     EGCLS+   
Sbjct: 77  QLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRT 136

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y D + +   I   G  +  +QHE+DHLNG++F D ++      + 
Sbjct: 137 VPGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGVMFYDRINEKDPFAVK 196

Query: 160 KKM 162
           + +
Sbjct: 197 EGL 199


>gi|329115956|ref|ZP_08244673.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
 gi|326906361|gb|EGE53275.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
          Length = 204

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR  +  +          +   +M  + N     M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAHAEEVSLPLSDQDLILGEKMMQFLKNSQDPVMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPD- 99
           + V  R++ + + +      NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 78  LDVSKRIIAVLVPNMEDAEGNPPKEAFSIKEVMYNPKIVSHSVQDAALADGEGCLSVDRL 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y D   +   I   G  A  +QHE+DH+NGI+F D ++      I 
Sbjct: 138 IEGYVVRHARVTVEYFDKEGEKHRIKLKGYNAIVVQHEIDHINGIMFYDRINSDTPFAIK 197

Query: 160 KKM 162
           + M
Sbjct: 198 EGM 200


>gi|134302514|ref|YP_001122484.1| peptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|254370075|ref|ZP_04986081.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874370|ref|ZP_05247080.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|134050291|gb|ABO47362.1| polypeptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151568319|gb|EDN33973.1| hypothetical protein FTBG_01170 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840369|gb|EET18805.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158706|gb|ADA78097.1| peptide deformylase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 210

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 22  NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS     R  +     I     + + +
Sbjct: 80  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 139

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 D + A   QHE +HL G +++D
Sbjct: 140 KITGKLDSIAAIIFQHEFNHLLGSVYVD 167


>gi|75766232|pdb|2AI7|A Chain A, S.Pneumoniae Polypeptide Deformylase Complexed With Sb-
           485345
 gi|75766238|pdb|2AIA|A Chain A, S.Pneumoniae Pdf Complexed With Sb-543668
          Length = 203

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                +  NPKI++ S   +     EGCLS+  + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189


>gi|312865443|ref|ZP_07725670.1| peptide deformylase [Streptococcus downei F0415]
 gi|311098961|gb|EFQ57178.1| peptide deformylase [Streptococcus downei F0415]
          Length = 204

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +E         +   +M  + N     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLREVAKDVELPLSDEDIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHR-KNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99
           + +  R++ + + +   +  NP         V  NP+I++ S  D      EGCLS+  +
Sbjct: 78  LDISKRIIAVLVPNPEDKEGNPPAQPYSMQEVMYNPRIVSHSVQDAALADGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R + +TV Y+D N   Q I   G  +  +QHE+DH NGI+F DH++      I 
Sbjct: 138 VPGYVVRHSRVTVEYVDKNGDKQKIKLRGYNSMVVQHEIDHTNGIMFYDHINEDNPFEIK 197

Query: 160 KKM 162
           + M
Sbjct: 198 EGM 200


>gi|307609411|emb|CBW98900.1| polypeptide deformylase [Legionella pneumophila 130b]
          Length = 200

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 14  LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---- 68
           L+  +  I+  +N +  +LI+ M + +Y+  G+GLAA Q+    +++ + + + A     
Sbjct: 17  LKTRAENIQFPLNREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 76

Query: 69  --RKNPM-VFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
             +  PM + INP          +   EGC S+      V R   I ++Y D        
Sbjct: 77  NAKIFPMHILINPSYEPLPHTRIISDFEGCYSVSSKAGKVPRYDEIRLKYYDEEGNAHQQ 136

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +G  A  LQHE+DHLNG+L  D L+    D +   + +++ +R
Sbjct: 137 IENGFYARVLQHEIDHLNGVLITDRLTP---DCVQGTIEEMMVIR 178


>gi|257468433|ref|ZP_05632527.1| hypothetical protein FulcA4_03769 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062699|ref|ZP_07927184.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185]
 gi|313688375|gb|EFS25210.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185]
          Length = 159

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 14/166 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVM------YSTDGIGLAAVQIGV 54
           +K+ +++  +  L ++S P++    + + +++ ++ + +      Y   G  +AA QIGV
Sbjct: 1   MKREILLLGNEELYQISEPVKPDEIETLKSVVQDLHDTLMDFREKYHA-GRAIAAPQIGV 59

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             RL+ + +        P+VFINP +    ++     + C+S P+    V R     ++Y
Sbjct: 60  KKRLLYMFID------KPVVFINPVLEFPDNEMMEVLDDCMSFPNLLVKVMRHKRCRIKY 113

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           +D + + Q++  +G L+  LQHE DHL+GIL        K  +I K
Sbjct: 114 LDMDWKEQVMSLEGDLSELLQHEFDHLDGILATMRAIDNKSLVIKK 159


>gi|309798501|ref|ZP_07692783.1| peptide deformylase [Streptococcus infantis SK1302]
 gi|308117873|gb|EFO55267.1| peptide deformylase [Streptococcus infantis SK1302]
          Length = 203

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 24/173 (13%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K ++   +P LR V+  +   ++   + L + M++ +  +             G+GLAA 
Sbjct: 17  KDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAAP 76

Query: 51  QIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIPD- 99
           Q+ +  R++ + + +                V  NPKI++ S   +     EGCLS+   
Sbjct: 77  QLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRA 136

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++ 
Sbjct: 137 VPGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 189


>gi|327460694|gb|EGF07029.1| peptide deformylase [Streptococcus sanguinis SK1]
          Length = 210

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAV 50
           K ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA 
Sbjct: 23  KDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAS 82

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  RL+ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 83  QLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 142

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 143 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 196


>gi|332522419|ref|ZP_08398671.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176]
 gi|332313683|gb|EGJ26668.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176]
          Length = 204

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR+ ++ +          +   +M  + +     M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRQKAQEVSLPLSDKDIILGEKMMQFLKHSQDPVMAEKLDLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPD- 99
           + +  R++ + + +      NP         V  NPK++  S  D      EGCLS+   
Sbjct: 78  LDISKRIIAVLVPNMEDSEGNPPKEAYSLQEVMYNPKVVAHSVQDAALAEGEGCLSVDRP 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R + +TV Y + + + Q I   G  A  +QHE+DH+NGI+F D +++     I 
Sbjct: 138 IEGYVVRHSRVTVDYYNKDGEKQRIKLKGYNAIVVQHEIDHINGIMFYDRINQADPFAIN 197

Query: 160 KKM 162
           + M
Sbjct: 198 EGM 200


>gi|331266683|ref|YP_004326313.1| peptide deformylase [Streptococcus oralis Uo5]
 gi|326683355|emb|CBZ00973.1| peptide deformylase [Streptococcus oralis Uo5]
          Length = 203

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                +  NPKI++ S   +     EGCLS+  + 
Sbjct: 78  LDISKRVIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++ 
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINE 189


>gi|54113563|gb|AAV29415.1| NT02FT1681 [synthetic construct]
          Length = 211

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 23  NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS     R  +     I     + + +
Sbjct: 81  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 140

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 D + A   QHE +HL G +++D
Sbjct: 141 KITGKLDSIAAIIFQHEFNHLLGSVYVD 168


>gi|156501866|ref|YP_001427931.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009647|ref|ZP_02274578.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368721|ref|ZP_04984734.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|156252469|gb|ABU60975.1| polypeptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121642|gb|EDO65812.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 210

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 22  NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS     R  +     I     + + +
Sbjct: 80  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 139

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 D + A   QHE +HL G +++D
Sbjct: 140 KITGKLDSIAAVIFQHEFNHLLGSVYVD 167


>gi|322386945|ref|ZP_08060569.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
 gi|321269227|gb|EFX52163.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
          Length = 210

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 24  DIIREGNPTLRAVAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 83

Query: 52  IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99
           + +  R++ + + +      NP         V  NPK++  S  D      EGCLS+  +
Sbjct: 84  LDISKRIIAVLVPNLEDEEGNPPKEAYSLAQVMYNPKVVAHSVQDAALADGEGCLSVDRE 143

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D + Q   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 144 VPGYVVRHARVTVDYFDKDGQKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 196


>gi|56707552|ref|YP_169448.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670023|ref|YP_666580.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224456620|ref|ZP_03665093.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604044|emb|CAG45036.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320356|emb|CAL08419.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
          Length = 211

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 23  NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS     R  +     I     + + +
Sbjct: 81  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 140

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 D + A   QHE +HL G +++D
Sbjct: 141 KITGKLDSIAAIIFQHEFNHLLGSVYVD 168


>gi|221120519|ref|XP_002163626.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 196

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 21/164 (12%)

Query: 6   LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           L    DP+LR+V+R +        D  +LI  M+ +M S  G G+AA Q+GV  +++ I+
Sbjct: 23  LRQNGDPVLRKVAREVPLEYINTQDFKDLITKMILIMRSNKGQGIAAPQVGVDLQVIAIE 82

Query: 63  LQDHA-----------------HRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
             +H                   R  P+ +FINPK+   + + + ++EGCLSI      V
Sbjct: 83  FTEHDLEMATKQYGKNEVEKRQMRTFPLHIFINPKLKIINYETTRFEEGCLSILGTVGVV 142

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           +R   + + +++    + ++  DG LA  +QHE+ HL G L +D
Sbjct: 143 QRYREVQLEFVNEKGVNVLMNFDGWLARMVQHEMHHLKGFLIVD 186


>gi|75766239|pdb|2AIE|P Chain P, S.Pneumoniae Polypeptide Deformylase Complexed With Sb-
           505684
          Length = 203

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                +  NPKI++ S   +     EGCLS+  + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189


>gi|225405389|ref|ZP_03760578.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme
           DSM 15981]
 gi|225043091|gb|EEG53337.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme
           DSM 15981]
          Length = 160

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYS-----TDGIGLAAVQIGVL 55
           + K +++  +P L  +S  + E+  +++  L  ++ + M         G  +AA QIGV 
Sbjct: 1   MIKEILLLGNPALYEISEAVREEELTEMAALERDLHDTMMEFRRIYKAGRAIAAPQIGVK 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R++ +++ +      P++ INP +     +     + C+S P     V R     + Y 
Sbjct: 61  KRVLYMNVGE------PVLLINPVLEFPDGEMMEVMDDCMSFPGLLVKVDRYRRCRIHYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           D N Q + +  +G L+  LQHE DHL+GIL        +
Sbjct: 115 DRNWQDEEMELEGDLSELLQHEYDHLDGILATMRAKDSR 153


>gi|319946246|ref|ZP_08020486.1| peptide deformylase [Streptococcus australis ATCC 700641]
 gi|319747628|gb|EFV99881.1| peptide deformylase [Streptococcus australis ATCC 700641]
          Length = 204

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++    P LR ++  +   ++   + L + M++ ++ +             G+GLAA Q
Sbjct: 18  DIIREGHPTLRAIAEEVTFPLSDQEIILGEKMMQFLHHSQDPVMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99
           + +  R++ + +        NP         V  NPKI++ S   +     EGCLS+  +
Sbjct: 78  LDISKRIIAVLVPNPEDEEGNPPKEAYSIQEVMYNPKIVSHSVQDAALGDGEGCLSVDRN 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y D   +   I   G  +  +QHE+DH+NG++F D ++ 
Sbjct: 138 VPGYVVRHARVTVDYYDKTGEKHRIKLKGYNSIVVQHEIDHINGVMFYDRINP 190


>gi|284033559|ref|YP_003383490.1| formylmethionine deformylase [Kribbella flavida DSM 17836]
 gi|283812852|gb|ADB34691.1| formylmethionine deformylase [Kribbella flavida DSM 17836]
          Length = 162

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQD 65
           V  P P+L      ++ ++  ++ L  +++  M  + G +GLAA Q+GV  ++  +D+  
Sbjct: 2   VRAPHPVLATEGAEVDPLDPVMLALAADLVATMRISPGCVGLAAPQVGVAAQMFALDVTG 61

Query: 66  HAHRK---NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-MDCNAQH 121
           H   +      V  N  ++  +      +EGC+S+PD   DVKR+  +TV   +      
Sbjct: 62  HPKTRTCHGVFVLCNAVVVEAT-RKEKAREGCMSVPDLTGDVKRATRLTVTGVLPGTTDV 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150
             +  D   A  +QHE+DH NG LF+D +
Sbjct: 121 VTLTTDAFEARAVQHEIDHCNGSLFLDRV 149


>gi|289168210|ref|YP_003446479.1| peptide deformylase [Streptococcus mitis B6]
 gi|307704979|ref|ZP_07641866.1| peptide deformylase [Streptococcus mitis SK597]
 gi|322376907|ref|ZP_08051400.1| peptide deformylase [Streptococcus sp. M334]
 gi|288907777|emb|CBJ22617.1| peptide deformylase [Streptococcus mitis B6]
 gi|307621430|gb|EFO00480.1| peptide deformylase [Streptococcus mitis SK597]
 gi|321282714|gb|EFX59721.1| peptide deformylase [Streptococcus sp. M334]
          Length = 203

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                +  NPKI++ S   +     EGCLS+  + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189


>gi|81429108|ref|YP_396108.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610750|emb|CAI55801.1| Formylmethionine deformylase (formyl-L-methionyl
           peptideamidohydrolase) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 136

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59
           + KP+ +     L +V+ P    ++ +   I ++++ + +     +G+AA  IGV  R++
Sbjct: 1   MIKPI-MHDTEFLSQVALPATTADTAV---ITDLIDTLQANTDRCVGMAANMIGVNKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ +        P++ +NPKII  S+ +   +EGCLS+   R+  KR   I V Y D   
Sbjct: 57  IVQMGIL-----PVIMVNPKIIRHSNPYQT-EEGCLSLVGQRS-TKRYETIEVSYQDRQF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q     G +A  +QHE+DH  GIL 
Sbjct: 110 KAQQQAFSGWVAQIIQHEIDHCEGILI 136


>gi|270293023|ref|ZP_06199234.1| peptide deformylase [Streptococcus sp. M143]
 gi|270279002|gb|EFA24848.1| peptide deformylase [Streptococcus sp. M143]
          Length = 203

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 24/182 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIPDY- 100
           + +  R++ + + +                +  NPKI++ S   +     EGCLS+    
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRVV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              V R A +TV Y D + +   I   G  +  +QHE+DHLNGI+F D ++      + +
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRINEKDPFAVKE 197

Query: 161 KM 162
            +
Sbjct: 198 GL 199


>gi|306829233|ref|ZP_07462423.1| peptide deformylase [Streptococcus mitis ATCC 6249]
 gi|304428319|gb|EFM31409.1| peptide deformylase [Streptococcus mitis ATCC 6249]
          Length = 208

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 23  DIIREGNPTLRAVAEEVTFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                +  NPKI++ S   +     EGCLS+  + 
Sbjct: 83  LDISKRIIAVLVPNIVEEGETPEEAYDLQAIMYNPKIVSHSVQNAALGEGEGCLSVDRNV 142

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 194


>gi|89255883|ref|YP_513245.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115314370|ref|YP_763093.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|254367244|ref|ZP_04983272.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
 gi|290953373|ref|ZP_06557994.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313377|ref|ZP_06803985.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143714|emb|CAJ78913.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115129269|gb|ABI82456.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253062|gb|EBA52156.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
          Length = 211

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I N++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 23  NKVLYQKCKPVADIQNAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS     R  +     I     + + +
Sbjct: 81  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 140

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 D + A   QHE +HL G +++D
Sbjct: 141 KITGKLDSIAAVIFQHEFNHLLGSVYVD 168


>gi|284931676|gb|ADC31614.1| peptide deformylase [Mycoplasma gallisepticum str. F]
          Length = 196

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53
           LV   +P +R V   ++  ++ +++++ID ML  +  +            GIG+AA Q+G
Sbjct: 12  LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFI 110
           +  R   +   D   +++  + INP+ I  S    +    EGCLS+P D    V RS  +
Sbjct: 72  LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131

Query: 111 TVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++  D    +   I A GLLA CLQHE+DHL G  + D ++ +K
Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176


>gi|325695505|gb|EGD37405.1| peptide deformylase [Streptococcus sanguinis SK150]
          Length = 220

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 25/174 (14%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50
           K ++   +P LR ++  +   ++   + L + M+            E M    G+GLAA 
Sbjct: 33  KDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVTAEKMGLRGGVGLAAP 92

Query: 51  QIGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP- 98
           Q+ +  R++ + +        NP         +  NPKI+  S  D      EGCLS+  
Sbjct: 93  QLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVDR 152

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +    V R A +TV Y D + Q   I   G  A  +QHE+DH+NGI+F D ++ 
Sbjct: 153 EVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRINE 206


>gi|67458516|ref|YP_246140.1| polypeptide deformylase [Rickettsia felis URRWXCal2]
 gi|67004049|gb|AAY60975.1| Polypeptide deformylase [Rickettsia felis URRWXCal2]
          Length = 224

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 41  STDGIGLAAVQIGVLYRLVVIDLQDHAHRK----------NPMVFINPKIITFSDDFSVY 90
             +  GLAA QI +   +++  + ++   K             ++INP       D    
Sbjct: 79  EENCAGLAAPQISISKCIIIFAVHENEELKKWRPNLKDTMPKTIWINPSYKPIGIDKHED 138

Query: 91  QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            EGC S+ +    V R   I     D N       A+G LA  +QHE+DHLNG +F+D+ 
Sbjct: 139 YEGCFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYA 198

Query: 151 SRLK---RDMITKKMSKLVQLRD 170
           +  K   ++   +K  K ++  +
Sbjct: 199 APKKIMTKEKYLEKRKKAMEQEN 221


>gi|302340674|ref|YP_003805880.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293]
 gi|301637859|gb|ADK83286.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293]
          Length = 175

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNM---LEVMYSTDGIG--LAAVQIGVLYRLV 59
           +++  DP LR+ +       ++ +    + +   LE   +  G G  +AA QIG+  R++
Sbjct: 5   ILLLGDPRLRKKATTASLPADTQLRREDERLQKALEAFRAEKGFGRAIAAPQIGISKRVI 64

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + L             NP I + S++  +  + C+S PD    V+R   I++ Y D   
Sbjct: 65  ALHLDGKT-----FSIFNPVITSHSEETFLLWDDCMSFPDLLVKVRRYTSISIVYQDALG 119

Query: 120 QHQIIY-ADGLLATCLQHELDHLNGILFIDHLSRLK 154
           +       D  L+  LQHE+DHL+GIL ID     K
Sbjct: 120 REHRWEKPDRSLSELLQHEIDHLDGILAIDRAIDRK 155


>gi|307709244|ref|ZP_07645702.1| peptide deformylase [Streptococcus mitis SK564]
 gi|307619827|gb|EFN98945.1| peptide deformylase [Streptococcus mitis SK564]
          Length = 203

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                +  NPKI++ S   +     EGCLS+  + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 138 PGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189


>gi|296877265|ref|ZP_06901305.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
 gi|312867979|ref|ZP_07728183.1| peptide deformylase [Streptococcus parasanguinis F0405]
 gi|296431785|gb|EFH17592.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
 gi|311096383|gb|EFQ54623.1| peptide deformylase [Streptococcus parasanguinis F0405]
          Length = 204

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V+  +   ++   + L + M++ ++ +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTFPLSDQEIILGEKMMQFLHHSQDPVMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99
           + +  R++ + + +      NP         V  NPK++  S   +     EGCLS+  +
Sbjct: 78  LDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSVQDAALGDGEGCLSVDRN 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y   + + + I   G  +  +QHE+DH NGI+F D ++      I 
Sbjct: 138 VPGYVVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEIDHTNGIMFYDRINPNNPFEIK 197

Query: 160 KKM 162
           + +
Sbjct: 198 EGL 200


>gi|254373927|ref|ZP_04989409.1| polypeptide deformylase [Francisella novicida GA99-3548]
 gi|151571647|gb|EDN37301.1| polypeptide deformylase [Francisella novicida GA99-3548]
          Length = 210

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I +++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 22  NKVLYQKCKPVADIQSAEIQNIITEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS     R  +     I     + + +
Sbjct: 80  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 139

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 D + A   QHE +HL G +++D
Sbjct: 140 KITAKLDSIAAVIFQHEFNHLLGSVYVD 167


>gi|322390858|ref|ZP_08064367.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
 gi|321142443|gb|EFX37912.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
          Length = 204

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR V+  +   ++   + L + M++ ++ +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTFPLSDQEIILGEKMMQFLHHSQDPIMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99
           + +  R++ + + +      NP         V  NPK++  S   +     EGCLS+  +
Sbjct: 78  LDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSVQDAALGDGEGCLSVDRN 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y   + + + I   G  +  +QHE+DH NGI+F D ++      I 
Sbjct: 138 VPGYVVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEIDHTNGIMFYDRINPNNPFEIK 197

Query: 160 KKM 162
           + +
Sbjct: 198 EGL 200


>gi|167626562|ref|YP_001677062.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596563|gb|ABZ86561.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 201

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I +S+  N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 13  NEVLYQRCKPVNDIQSSETQNIIAEMYEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 70

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           + P+        VFINPKI   S+    +  GCLS     R  +     I     + + +
Sbjct: 71  RYPLSFDSVPFQVFINPKITKASEKRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGK 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 D + A   QHE +HL G +++D
Sbjct: 131 KITGKLDSIAAVIFQHEFNHLLGSVYVD 158


>gi|157964118|ref|YP_001498942.1| polypeptide deformylase [Rickettsia massiliae MTU5]
 gi|157843894|gb|ABV84395.1| Polypeptide deformylase [Rickettsia massiliae MTU5]
          Length = 232

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 11  DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----- 61
           D  +R  ++    P+   +   +++++   +     +  GLAA QIG+   +++      
Sbjct: 55  DKTIRIKAKTLNFPLSSEDLRDISILEKKYD--QEENCAGLAAPQIGISKCIIIFAVHED 112

Query: 62  -----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
                   D        ++INP       D     EGC S+ +    V R   I     D
Sbjct: 113 AELKKWRPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENAIGPVARFKKIHYHAYD 172

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            N       A+G LA  +QHE+DHLNG +F+D+++  ++ M  ++  ++ +
Sbjct: 173 INGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-QKIMTKEEYLEMRK 222


>gi|229586292|ref|YP_002844793.1| Polypeptide deformylase [Rickettsia africae ESF-5]
 gi|228021342|gb|ACP53050.1| Polypeptide deformylase [Rickettsia africae ESF-5]
          Length = 224

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 11  DPILRRVSR----PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           D  +R  ++    P+   +   +++++   +     +  GLAA QIG+   +++  + + 
Sbjct: 47  DKTIRIKAQTLNFPLSSEDLRNISILEKKYD--QEENCAGLAAPQIGISKCIIIFAVHED 104

Query: 67  AHRK----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           A  K             ++INP       D     E C S+ +    V R   I     D
Sbjct: 105 AELKKWHPDLKDTIPKTIWINPSYKPIGIDKHEDYEECFSVENATGPVARFKKIHYHAYD 164

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            N       A+G LA  +QHE+DHLNG +F+D+++  K+ M  ++  ++ +
Sbjct: 165 INGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214


>gi|159040050|ref|YP_001539303.1| XRE family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157918885|gb|ABW00313.1| transcriptional regulator, XRE family [Salinispora arenicola
           CNS-205]
          Length = 506

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 11/156 (7%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYS-------TDGIGLAAVQIGVLY 56
           ++     +LR+ +RP +  + +    +++D +   ++        + G+G+AA Q+G+  
Sbjct: 334 ILQHGADLLRQPTRPFDLPREDRAARDVVDRLTATLFRLDELHPFSKGVGIAAPQLGIGR 393

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              V+   D +    P+V +NP+++  + D     EGCLS  D R  V R   I V +  
Sbjct: 394 AAAVVRPPDLSGE--PVVLLNPRVVDAAPDTDEQYEGCLSFFDQRGLVPRPLRIDVEHTH 451

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +    I   +  +A  + HE+DHL G L++D ++ 
Sbjct: 452 IDGSRVITSYEYGMARLVAHEIDHLEGRLYVDRMAP 487


>gi|217073027|gb|ACJ84873.1| unknown [Medicago truncatula]
          Length = 241

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 17/132 (12%)

Query: 7   VIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           V   DP+L   ++ ++    ++  +  +ID+M+ VM    G+GLAA QIGV  R++V++ 
Sbjct: 82  VKAGDPVLHEPAQEVDPSEIMSDKVQKIIDDMIRVMRKAPGVGLAAPQIGVSSRIIVLED 141

Query: 64  QD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
            +                H  + +V +NPK+ + S   +++ EGCLS+  +RA V+R   
Sbjct: 142 TEEFISYAPKEVLKAQDRHPFDLLVILNPKLKSTSKRTALFFEGCLSVDGFRAVVERHLD 201

Query: 110 ITVRYMDCNAQH 121
           + V  +D N   
Sbjct: 202 VEVTGLDRNGDQ 213


>gi|7109689|gb|AAF36760.1| polypeptide deformylase [Mycoplasma gallisepticum]
 gi|28212477|gb|AAO37616.1| polypeptide deformylase [Mycoplasma gallisepticum]
          Length = 204

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53
           LV   +P +R V   ++  ++ +++++ID ML  +  +            GIG+AA Q+G
Sbjct: 20  LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 79

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-DYRADVKRSAFI 110
           +  R   +   D   +++  + INP+ I  S    +    EGCLS+P D    V RS  +
Sbjct: 80  LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 139

Query: 111 TVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
            ++  D    +   I A GLLA CLQHE+DHL G  + D ++ +K
Sbjct: 140 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 184


>gi|328675640|gb|AEB28315.1| Peptide deformylase [Francisella cf. novicida 3523]
          Length = 204

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+ +I S +I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 16  NQVLYQKCKPVSEIKSVEIQNIITEMYEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 73

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS     R  +     I     + + +
Sbjct: 74  RYPFDFGSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 133

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
             I   D + A   QHE +HL G +++D
Sbjct: 134 KIIGKLDSIAAVIFQHEFNHLLGSVYVD 161


>gi|301794480|emb|CBW36919.1| polypeptide deformylase [Streptococcus pneumoniae INV104]
 gi|332203286|gb|EGJ17354.1| peptide deformylase [Streptococcus pneumoniae GA47901]
          Length = 203

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                +  NPKI++ S   +     EGCLS+  + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEGIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189


>gi|297720233|ref|NP_001172478.1| Os01g0636600 [Oryza sativa Japonica Group]
 gi|255673494|dbj|BAH91208.1| Os01g0636600 [Oryza sativa Japonica Group]
          Length = 198

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 58/99 (58%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V +PDPILR  ++ I   + ++ +L D M +VMY TDGIGL+A Q+GV  +L+V +   
Sbjct: 84  VVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAG 143

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
                  +V +NP +   S    VY+E CLS P   A+V
Sbjct: 144 VKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANV 182


>gi|116490852|ref|YP_810396.1| peptide deformylase [Oenococcus oeni PSU-1]
 gi|290890300|ref|ZP_06553379.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429]
 gi|116091577|gb|ABJ56731.1| peptide deformylase [Oenococcus oeni PSU-1]
 gi|290480086|gb|EFD88731.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429]
          Length = 185

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 21/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51
            +    +P+LR  ++P+   ++ +I  L   MLE              +   G+GLA  Q
Sbjct: 3   DITRDGNPVLRAKAKPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQ 62

Query: 52  IGVLYRLVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRAD 103
           +    ++  + +      ++       +  NPKI   S   +  +  EGCLS   D    
Sbjct: 63  VNKSLQMTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALETGEGCLSKDEDTPGI 122

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           V R+  ITV Y D N +H  I      A   QHE+DHL GI++ DH++ L
Sbjct: 123 VLRADKITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 172


>gi|322392208|ref|ZP_08065669.1| peptide deformylase [Streptococcus peroris ATCC 700780]
 gi|321144743|gb|EFX40143.1| peptide deformylase [Streptococcus peroris ATCC 700780]
          Length = 203

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 24/180 (13%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAV 50
           K ++   +P LR ++  +   ++   + L + ML            E M    G+GLAA 
Sbjct: 17  KDIIREGNPTLRALAEEVSFPLSDQEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAAP 76

Query: 51  QIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFS--DDFSVYQEGCLSIP-D 99
           Q+ +  R++ + + +                V  NPKI++ S  D      EGCLS+  +
Sbjct: 77  QLDISKRIIAVLVPNIVEEGETPTEAYSMQAVMYNPKIVSHSVQDAALAEGEGCLSVDRE 136

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y D + +   I   G  +  +QHE+DH NG++F D ++      I 
Sbjct: 137 VPGYVIRHARVTVEYFDKDGEKHRIKLKGYNSIVVQHEIDHTNGVMFYDRINEKDPFEIK 196


>gi|22538033|ref|NP_688884.1| peptide deformylase [Streptococcus agalactiae 2603V/R]
 gi|25011922|ref|NP_736317.1| peptide deformylase [Streptococcus agalactiae NEM316]
 gi|76788216|ref|YP_330458.1| peptide deformylase [Streptococcus agalactiae A909]
 gi|76797863|ref|ZP_00780126.1| peptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77405647|ref|ZP_00782735.1| polypeptide deformylase [Streptococcus agalactiae H36B]
 gi|77408421|ref|ZP_00785160.1| polypeptide deformylase [Streptococcus agalactiae COH1]
 gi|77411534|ref|ZP_00787877.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|77414207|ref|ZP_00790370.1| polypeptide deformylase [Streptococcus agalactiae 515]
 gi|39930892|sp|Q8DXF6|DEF_STRA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|39930894|sp|Q8E378|DEF_STRA3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123601213|sp|Q3JZ45|DEF_STRA1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|22534936|gb|AAN00757.1|AE014277_5 polypeptide deformylase [Streptococcus agalactiae 2603V/R]
 gi|24413464|emb|CAD47542.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563273|gb|ABA45857.1| peptide deformylase [Streptococcus agalactiae A909]
 gi|76586766|gb|EAO63261.1| peptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77159733|gb|EAO70881.1| polypeptide deformylase [Streptococcus agalactiae 515]
 gi|77162388|gb|EAO73356.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|77172944|gb|EAO76074.1| polypeptide deformylase [Streptococcus agalactiae COH1]
 gi|77175720|gb|EAO78501.1| polypeptide deformylase [Streptococcus agalactiae H36B]
          Length = 204

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDN-------------MLEVMYSTDGIGLAAVQ 51
            ++   +P LR+V+  +    S+   ++               M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99
           + +  R++ + + +    + NP         V  NPK+++ S  D      EGCLS+  +
Sbjct: 78  LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +T+ Y D   +   +   G  +  +QHE+DH++GI+F D ++ 
Sbjct: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190


>gi|323704619|ref|ZP_08116197.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536081|gb|EGB25854.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 117

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 70/113 (61%), Gaps = 6/113 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DPIL + ++ +EKI+  I+ ++++M E MY+ DG+GLAA QIG+L RLVV
Sbjct: 1   MALRYIREIGDPILYKKAKQVEKIDEHILMILEDMAETMYNADGVGLAANQIGILRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           +D+ +       +  INP+II   +   +  EGCLS+P+   +V R A + V+
Sbjct: 61  VDVGE-----GLIELINPEII-LEEGEQIGVEGCLSVPNVTGEVIRPAKVRVK 107


>gi|291542377|emb|CBL15487.1| N-formylmethionyl-tRNA deformylase [Ruminococcus bromii L2-63]
          Length = 136

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + + +V   DP  L+R S    + +   +    ++L+ + +     +G+AA  IGV  R+
Sbjct: 1   MVREIVH--DPMFLQRKSEDATQAD---LQTAQDLLDTLRANFDRCVGMAANMIGVAKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + I+          +V  NP+II+   +F   +EGCLS+   R  V R   I V+Y + N
Sbjct: 56  IAINDNGKY-----LVMFNPEIISKFGEFET-EEGCLSLDGERKTV-RYKTIKVKYFNEN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +          A  +QHE+DH NGIL 
Sbjct: 109 FKQIKRSFSDFTAQIIQHEIDHCNGILI 136


>gi|184155075|ref|YP_001843415.1| peptide deformylase [Lactobacillus fermentum IFO 3956]
 gi|260663619|ref|ZP_05864508.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
 gi|238692958|sp|B2GBA3|DEF_LACF3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|183226419|dbj|BAG26935.1| formylmethionine deformylase [Lactobacillus fermentum IFO 3956]
 gi|260551845|gb|EEX24960.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
          Length = 189

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 20/160 (12%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRLV 59
           +LR  +  +   +  +   L  +++E +  +             G+GLAA Q+ V  ++ 
Sbjct: 16  VLRDYAAKVSFPLTEEEQQLAKDLMEYLEISQDEELAEKYGLRAGVGLAAPQVNVSKQMA 75

Query: 60  VIDLQ-DHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADVKRSAFITV 112
            + +  D      P+   V INP II+ S         EGCLS+  D    V R   IT+
Sbjct: 76  AVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSVDRDIAGYVPRHDRITL 135

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +Y D   +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 136 KYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175


>gi|15901306|ref|NP_345910.1| peptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|111657373|ref|ZP_01408130.1| hypothetical protein SpneT_02001427 [Streptococcus pneumoniae
           TIGR4]
 gi|148990264|ref|ZP_01821475.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|149007273|ref|ZP_01830931.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|149011684|ref|ZP_01832880.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|168486151|ref|ZP_02710659.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00]
 gi|168491354|ref|ZP_02715497.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|225857082|ref|YP_002738593.1| peptide deformylase [Streptococcus pneumoniae P1031]
 gi|225860775|ref|YP_002742284.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230951|ref|ZP_06964632.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254975|ref|ZP_06978561.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502590|ref|YP_003724530.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|307126974|ref|YP_003879005.1| peptide deformylase [Streptococcus pneumoniae 670-6B]
 gi|17432945|sp|Q9F2F0|DEF_STRPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767606|sp|C1CLF5|DEF_STRZP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767607|sp|C1CQR2|DEF_STRZT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|11125374|emb|CAC15392.1| polypeptide deformylase [Streptococcus pneumoniae]
 gi|14972945|gb|AAK75550.1| peptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|15858850|gb|AAK13240.1| peptide deformylase DefB [Streptococcus pneumoniae]
 gi|147761077|gb|EDK68045.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|147764115|gb|EDK71047.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|147924403|gb|EDK75493.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|183570800|gb|EDT91328.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00]
 gi|183574326|gb|EDT94854.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|225726126|gb|ACO21978.1| peptide deformylase [Streptococcus pneumoniae P1031]
 gi|225727795|gb|ACO23646.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238185|gb|ADI69316.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|306484036|gb|ADM90905.1| peptide deformylase [Streptococcus pneumoniae 670-6B]
 gi|327389641|gb|EGE87986.1| peptide deformylase [Streptococcus pneumoniae GA04375]
 gi|332074778|gb|EGI85252.1| peptide deformylase [Streptococcus pneumoniae GA17545]
          Length = 203

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                +  NPKI++ S   +     EGCLS+  + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189


>gi|319745793|gb|EFV98087.1| peptide deformylase [Streptococcus agalactiae ATCC 13813]
          Length = 204

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDN-------------MLEVMYSTDGIGLAAVQ 51
            ++   +P LR+V+  +    S+   ++               M E +    G+GLAA Q
Sbjct: 18  DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99
           + +  R++ + + +    + NP         V  NPK+++ S  D      EGCLS+  +
Sbjct: 78  LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +T+ Y D   +   +   G  +  +QHE+DH++GI+F D ++ 
Sbjct: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190


>gi|86742919|ref|YP_483319.1| formylmethionine deformylase [Frankia sp. CcI3]
 gi|86569781|gb|ABD13590.1| formylmethionine deformylase [Frankia sp. CcI3]
          Length = 549

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 13/159 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRP---------IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQ 51
           M    +V   + ILR+ +RP           ++ +++ + ++ +  +     G+G+AA Q
Sbjct: 372 MAAVGIVQEGEAILRQPARPFALPNEAEDARRVVAELSSALERVSALHTFGKGLGIAAPQ 431

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +G+     ++         + +  +NP +I  S +     EGCLS  D R  V R   + 
Sbjct: 432 VGINRAAAIVRTAG----GDTLTLLNPSVIETSRETDEQYEGCLSFFDVRGLVPRPLELH 487

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           V + D +    I      LA  + HE+DHL+G L+ D +
Sbjct: 488 VEHTDIDGNRHITVYRQGLARLVAHEIDHLHGQLYTDRM 526


>gi|162448037|ref|YP_001621169.1| peptide deformylase [Acholeplasma laidlawii PG-8A]
 gi|161986144|gb|ABX81793.1| peptide deformylase [Acholeplasma laidlawii PG-8A]
          Length = 192

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 21/168 (12%)

Query: 6   LVIFPDPILRRVSRPI----EKINSDI-MNLI--------DNMLEVMYSTDGIGLAAVQI 52
           ++    P L   S+P+     + + D+  +LI        D M++       +GLAA QI
Sbjct: 4   IIREGHPSLTTPSKPVLLPLSQKDIDLGKSLIEYVKNSQDDAMVKKHRLRPSVGLAAPQI 63

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIPD-YRADVKRSAF 109
             L R+  + ++D        V INP+I+  T  + +    EGCLS+         R   
Sbjct: 64  NELKRMFAMHVEDMDGTLYSYVMINPEIVGHTHEETYLPGGEGCLSVDRATSGLTPRYYG 123

Query: 110 ITVRYMDCNA-----QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           I VR    +      +   +  +G  A   QHE DHL+GI+F   L  
Sbjct: 124 IMVRGYHLDFESLTAKPIELTLEGYPAIVFQHEYDHLDGIMFTSKLYP 171


>gi|228476502|ref|ZP_04061192.1| peptide deformylase [Streptococcus salivarius SK126]
 gi|228251923|gb|EEK10969.1| peptide deformylase [Streptococcus salivarius SK126]
          Length = 204

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + M+            E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTFPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99
           + +  R++ + + +      NP         +  NPK++  S   +     EGCLS+  D
Sbjct: 78  LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGDGEGCLSVDRD 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y +   + Q +   G  +  +QHE+DH NGI+F D +++
Sbjct: 138 VPGYVVRHARVTVEYFNKEGEKQRVKLRGYNSIVVQHEIDHTNGIMFYDRINK 190


>gi|153952996|ref|YP_001393761.1| Def1 [Clostridium kluyveri DSM 555]
 gi|219853653|ref|YP_002470775.1| hypothetical protein CKR_0310 [Clostridium kluyveri NBRC 12016]
 gi|146345877|gb|EDK32413.1| Def1 [Clostridium kluyveri DSM 555]
 gi|219567377|dbj|BAH05361.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 161

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYS-----TDGIGLAAVQIGVL 55
           + K +++  +  L R S P+E+ + D+    I N+ + +         G  +AA QIGV 
Sbjct: 1   MIKEILLLGNYDLYRKSSPVEEKDIDLIKQTISNLHDTLIDFRKKYNAGRAIAAPQIGVF 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ + + +      P++FINP +   + +     + C+S PD    VKR    TV Y 
Sbjct: 61  KRLIYMYIDE------PLIFINPILTFPNKEMMEVMDDCMSFPDLLVKVKRFKNCTVTYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           D N +   I  +G L+  +QHE DHL+GIL        K
Sbjct: 115 DMNFKENSIKFEGDLSELIQHEYDHLDGILATMRAIDSK 153


>gi|118586207|ref|ZP_01543674.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163]
 gi|118433357|gb|EAV40056.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163]
          Length = 197

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 21/170 (12%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51
            +    +P+LR  ++P+   ++ +I  L   MLE              +   G+GLA  Q
Sbjct: 15  DITRDGNPVLRAKAQPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQ 74

Query: 52  IGVLYRLVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRAD 103
           +    ++  + +      ++       +  NPKI   S   +  +  EGCLS   D    
Sbjct: 75  VNKSLQMTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALEAGEGCLSKDEDTPGI 134

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           V R+  ITV Y D N +H  I      A   QHE+DHL GI++ DH++ L
Sbjct: 135 VLRADKITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 184


>gi|295099934|emb|CBK89023.1| peptide deformylase [Eubacterium cylindroides T2-87]
          Length = 184

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 17/164 (10%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +++  DP +R+ SR +E  +N +   L++ +LE + ++              +G+AA+Q+
Sbjct: 8   IILDTDPRIRQKSRKVELPLNQEDKELLEALLEYVRNSTDEEIAERDNLEPAVGIAAIQV 67

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYR-ADVKRSAF 109
           GV  +L+ + + D       +   NPKII+ S    +    EGCLS+ +     V R A 
Sbjct: 68  GVPKKLIAVVVPDEEGNVQEVALANPKIISESVQNAYLDNGEGCLSVKEVHEGHVFRHAR 127

Query: 110 ITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           I VR  D     +  I A+G  A  LQHE+DHL+GILF D + +
Sbjct: 128 IKVRGYDLIKDDNVTISAEGYFAIALQHEIDHLSGILFYDRIDK 171


>gi|227514799|ref|ZP_03944848.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
 gi|227086847|gb|EEI22159.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
          Length = 189

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 20/160 (12%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRLV 59
           +LR  +  +   +  +   L  +++E +  +             G+GLAA Q+ +  ++ 
Sbjct: 16  VLRDYAAKVSFPLTEEEQQLAKDLMEYLEISQDEELAEKYGLRAGVGLAAPQVNISKQMA 75

Query: 60  VIDLQ-DHAHRKNPM---VFINPKIITFSDDF--SVYQEGCLSIP-DYRADVKRSAFITV 112
            + +  D      P+   V INP II+ S         EGCLS+  D    V R   IT+
Sbjct: 76  AVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSVDRDIAGYVPRHDRITL 135

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +Y D   +   +      A   QHE+DHL+G+LF DH+++
Sbjct: 136 KYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175


>gi|312863990|ref|ZP_07724226.1| peptide deformylase [Streptococcus vestibularis F0396]
 gi|322517594|ref|ZP_08070462.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
 gi|311100403|gb|EFQ58610.1| peptide deformylase [Streptococcus vestibularis F0396]
 gi|322123759|gb|EFX95337.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
          Length = 204

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + M+            E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTFPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99
           + +  R++ + + +      NP         +  NPK++  S   +     EGCLS+  D
Sbjct: 78  LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGDGEGCLSVDRD 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y +   + Q +   G  +  +QHE+DH NGI+F D +++
Sbjct: 138 VPGYVVRHARVTVEYYNKEGEKQRVKLRGYNSIVVQHEIDHTNGIMFYDRINK 190


>gi|158320246|ref|YP_001512753.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs]
 gi|158140445|gb|ABW18757.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs]
          Length = 164

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD-----GIGLAAVQIGVL 55
           + + ++   +P L   S  + + +   +   + ++ + +         G  +AA QIG+ 
Sbjct: 1   MVREILKLGNPQLYETSEEVVEADIAFLSEWVQDLHDTLMDYRERYGAGRAVAAPQIGIK 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ +          P +FINP +    D+     + C+S P     V+R     + Y 
Sbjct: 61  KRLLYMFTD------QPYIFINPVMSFPEDEKYTLLDDCMSFPGLIVKVERYKRAEISYF 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D +   Q +Y  G L+  LQHE DHL GIL        K  +  ++M +
Sbjct: 115 DKDFNPQKMYLKGDLSELLQHEYDHLEGILATMRAVDNK-SLYLEQMKR 162


>gi|55820249|ref|YP_138691.1| peptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55822139|ref|YP_140580.1| peptide deformylase [Streptococcus thermophilus CNRZ1066]
 gi|116627103|ref|YP_819722.1| peptide deformylase [Streptococcus thermophilus LMD-9]
 gi|81676625|sp|Q5M1R9|DEF_STRT1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81676774|sp|Q5M6B0|DEF_STRT2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122268294|sp|Q03MP6|DEF_STRTD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|55736234|gb|AAV59876.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55738124|gb|AAV61765.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066]
 gi|116100380|gb|ABJ65526.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus
           LMD-9]
 gi|312277572|gb|ADQ62229.1| Peptide deformylase [Streptococcus thermophilus ND03]
          Length = 204

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + M+            E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTLPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSVYQ--EGCLSIP-D 99
           + +  R++ + + +    + NP         +  NPK++  S   +     EGCLS+  D
Sbjct: 78  LDISKRIIAVLVPNPEDAKGNPPKEAYSLQEIMYNPKVVAHSVQEAALGNGEGCLSVDRD 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +T+ Y +   + + I   G  +  +QHE+DH NGI+F D +++
Sbjct: 138 VPGYVVRHARVTIEYFNKEGEKKRIKLRGYDSIVVQHEIDHTNGIMFYDRINK 190


>gi|328676563|gb|AEB27433.1| Peptide deformylase [Francisella cf. novicida Fx1]
          Length = 204

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I +++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 16  NKVLYQKCKPVADIQSAEIQNIITEMHEKM-QCNGIGLAANQIGYPYQIFMIEF-DSSNA 73

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS     R  +     I     + + +
Sbjct: 74  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 133

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
             I   + + A   QHE +HL G +++D
Sbjct: 134 KIIGKLESIAAVIFQHEFNHLLGSVYVD 161


>gi|322373777|ref|ZP_08048312.1| peptide deformylase [Streptococcus sp. C150]
 gi|321277149|gb|EFX54219.1| peptide deformylase [Streptococcus sp. C150]
          Length = 204

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +   ++ + + L + M+            E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAEDVTLPLSDEDIILGEKMMQFLRNSQDPIIAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIP-D 99
           + +  R++ + + +      NP         +  NPK++  S   +     EGCLS+  D
Sbjct: 78  LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGEGEGCLSVDRD 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R A +TV Y +   + + I   G  +  +QHE+DH NGI+F DH+++
Sbjct: 138 VPGYVVRHARVTVEYFNKEGEKKRIKFRGYNSIVVQHEIDHTNGIMFYDHINK 190


>gi|24378660|ref|NP_720615.1| peptide deformylase [Streptococcus mutans UA159]
 gi|39930891|sp|Q8DWC2|DEF_STRMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|24376521|gb|AAN57921.1|AE014866_3 putative polypeptide deformylase [Streptococcus mutans UA159]
          Length = 204

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR V++ +   +N D + L + ML            E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN---------PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           + +  R++ + + +   +             V  NP+II  S  D      EGCLS+   
Sbjct: 78  LDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R + +T+ Y D N+  + +   G  +  +QHE+DH NGI+F D ++      I 
Sbjct: 138 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINEKNPFEIK 197

Query: 160 KKM 162
           + +
Sbjct: 198 EGL 200


>gi|111225848|ref|YP_716642.1| putative polypeptide deformylase [Frankia alni ACN14a]
 gi|111153380|emb|CAJ65136.1| hypothetical protein; putative Polypeptide deformylase [Frankia
           alni ACN14a]
          Length = 550

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 17/163 (10%)

Query: 1   MVKKPLVIFPDPILRRVSR----PIEKINSDIMNLIDNMLEVMYS-------TDGIGLAA 49
           M    +V   DP L + +R    P+E  ++    ++  +   M           G+G+AA
Sbjct: 373 MAAAGIVQVGDPSLHQPARSFELPVEAEDA--RRVVAELSSAMERVSALHTFGKGMGIAA 430

Query: 50  VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
            QIG+     ++   D     + +  +NP++I    +     EGCLS  D R  V RS  
Sbjct: 431 PQIGINRAAAIVRSAD----GDILTLLNPRVIESVPESDEQYEGCLSFFDVRGIVPRSLE 486

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           + V + D + +  I      LA  + HE+DHL+G L+ D +  
Sbjct: 487 LHVEHTDTSGRRHITVYRQGLARLVAHEIDHLHGRLYTDRMRP 529


>gi|284006808|emb|CBA72075.1| polypeptide deformylase [Arsenophonus nasoniae]
          Length = 219

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKN--------PMVFINPKIIT-FSDDFSVYQEGCL 95
            GLAA Q+G  +++V+I +   A  K         P + INP      +       EGC 
Sbjct: 85  AGLAAPQVGYPFKIVIIQIPPEAKEKRKDVYDTLSPTILINPVYTPILNAGQIKDWEGCF 144

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           SIP+   +V R   I         +    +A G LA  +QHE+DHLNG L+ID+L    R
Sbjct: 145 SIPNKMGEVYRYNEIYYEAYTLEGKKISAHAKGFLARLIQHEIDHLNGKLYIDYLCDDCR 204

Query: 156 DMITKKMSKLVQLRD 170
            + T +   ++++ +
Sbjct: 205 FVSTTEALNIMKIEE 219


>gi|222152449|ref|YP_002561624.1| peptide deformylase [Streptococcus uberis 0140J]
 gi|254767604|sp|B9DTD6|DEF_STRU0 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|222113260|emb|CAR40782.1| polypeptide deformylase [Streptococcus uberis 0140J]
          Length = 204

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++   +P LR+ +  +   ++ + + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRKEASEVSLPLSDEDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAH-RKNP--------MVFINPKIITFSDDFSV--YQEGCLSIPD- 99
           + +  R++ + + +      NP         +  NPKI+  S   +     EGCLS+   
Sbjct: 78  LDISKRIIAVLVPNMEDSEGNPPKEAYSLQEIMYNPKIVAHSVQEAALADGEGCLSVDRL 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R + +TV Y D       I   G  A  +QHE+DH+NGI+F D ++      I 
Sbjct: 138 VEGYVVRHSRVTVDYYDKKGDKHRIKLKGYNAIVVQHEIDHINGIMFYDRINSQNPFAIK 197

Query: 160 KKM 162
           + M
Sbjct: 198 EGM 200


>gi|289645164|ref|ZP_06477181.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca
           glomerata]
 gi|289505026|gb|EFD26107.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca
           glomerata]
          Length = 529

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 13/161 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQ 51
           M    +V     IL + +RP +         ++ +++ + I+ +  +     G+G+AA Q
Sbjct: 351 MAAVGIVQQGAEILSKPARPFDLPAEAEDARRVVAELSSAIERVSALHTFGKGMGIAAPQ 410

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +G+     ++   D     + +  +NP +I  S +     EGCLS  D R  V R   + 
Sbjct: 411 VGINRAAAIVRTVD----GDTITLLNPTVIEASPETDEQYEGCLSFFDVRGLVPRPLTLH 466

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V + D +   +II  +  LA  + HE+DHL+G L+ D +  
Sbjct: 467 VEHADIDGTRRIIAFEKGLARLVAHEIDHLDGHLYTDKMRP 507


>gi|254372465|ref|ZP_04987954.1| hypothetical protein FTCG_00025 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570192|gb|EDN35846.1| hypothetical protein FTCG_00025 [Francisella novicida GA99-3549]
          Length = 210

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I +++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 22  NKVLYQKCKPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 79

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS     R  +     I     + + +
Sbjct: 80  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 139

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 D + A   QHE +HL G +++D
Sbjct: 140 KITGKLDSIAAVIFQHEFNHLLGSVYVD 167


>gi|311745501|ref|ZP_07719286.1| peptide deformylase [Algoriphagus sp. PR1]
 gi|126578054|gb|EAZ82274.1| peptide deformylase [Algoriphagus sp. PR1]
          Length = 161

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55
               ++   DP L  V  P+     E++      L + M ++  +   G G+AA Q+G++
Sbjct: 3   TIHDILKLGDPRLYEVCDPVLKSELEQVPIWTQQLHEAMEDIRKAYGFGRGIAAPQLGIM 62

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R+  ++L        P + +NP++   S++     + C+S P     V+R   +T+ Y 
Sbjct: 63  KRMFYLNLD------KPYIILNPELKNPSEEMFELWDDCMSFPKLLVKVRRHQSLTLSYR 116

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D N   Q     G  +  +QHE DHL+G+L        K     +
Sbjct: 117 DQNWTLQEWKVSGENSELIQHEYDHLDGVLCTMRAIDQKSFRWKE 161


>gi|255027127|ref|ZP_05299113.1| peptide deformylase [Listeria monocytogenes FSL J2-003]
          Length = 131

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 43  DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSIP-D 99
            G+G+AA Q+ V  R + I + D   R    V  NPKI + S   +     EGCLS+  +
Sbjct: 5   GGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDRE 64

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
               V RS  +T+   D N     +   G  A  +QHE+DHLNGI+F DH+++ 
Sbjct: 65  VPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 118


>gi|194396894|ref|YP_002038089.1| peptide deformylase [Streptococcus pneumoniae G54]
 gi|238690834|sp|B5E5U9|DEF_STRP4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194356561|gb|ACF55009.1| peptide deformylase [Streptococcus pneumoniae G54]
          Length = 203

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR ++  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAIAEKVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSVYQEG--CLSIP-DY 100
           + +  R++ + + +                +  NPKI++ S   +   EG  CLS+  + 
Sbjct: 78  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEXCLSVDRNV 137

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 189


>gi|238923534|ref|YP_002937050.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|238875209|gb|ACR74916.1| peptide deformylase [Eubacterium rectale ATCC 33656]
          Length = 136

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + K +V   DP+ L + S    + +     ++ ++L+ + +     +G+AA  IGV   +
Sbjct: 1   MVKKIVK--DPLFLAQKSVDATEPD---KQVVTDLLDTLRANLDHCVGMAANMIGVKKNI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+              INP I   S  +   +EGCLS+   R    R   I V Y+D +
Sbjct: 56  IVVAAGPFQ-----FAMINPVITKKSGAYQT-EEGCLSLEGVR-PCTRYQEIEVDYLDQS 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH NGI+ 
Sbjct: 109 FKKQHGKYSGWTAQIIQHEIDHCNGIVI 136


>gi|302779750|ref|XP_002971650.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii]
 gi|300160782|gb|EFJ27399.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii]
          Length = 166

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++ DP LR  +  I   +  +  L   ML+V Y  DG+GL+A Q+GV  RL+V + + 
Sbjct: 8   IVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARLMVFNPEG 64

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQ----EGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
              +    VF+NP I+ F  +            +S   YR+++K          D N + 
Sbjct: 65  ERGKGKEYVFVNPMIVKFGKEREARFSFIACVFVSRDRYRSELK--------AQDINGKK 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
                 G  A   +HE DHL G+L+ID ++    + I +++
Sbjct: 117 FGTAFRGWTAGIFRHEYDHLEGVLYIDQMTPKSLNSIGQEL 157


>gi|322388290|ref|ZP_08061894.1| peptide deformylase [Streptococcus infantis ATCC 700779]
 gi|321140962|gb|EFX36463.1| peptide deformylase [Streptococcus infantis ATCC 700779]
          Length = 136

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVV 60
            K ++      L +VS+P  + +     L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSQPASQEDLP---LAKDLQDTLLANRESCVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++        PMV  NP + +F   +   +EGCLS+   R    R   ITV Y D + Q
Sbjct: 58  FNIG-----MIPMVMFNPVLQSFEGSYET-EEGCLSLTGVR-PTTRYEKITVSYRDIHWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL GI+ 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGIII 136


>gi|315222331|ref|ZP_07864237.1| peptide deformylase [Streptococcus anginosus F0211]
 gi|315188664|gb|EFU22373.1| peptide deformylase [Streptococcus anginosus F0211]
          Length = 204

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 25/180 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +          +   ++  + N     M E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKDVTFPLTEQEVILGEKMLQFLRNSQDPVMAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99
           + +  R++ + + +      NP         V  N K++  S  D      EGCLS+  +
Sbjct: 78  LDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKVVAHSVQDAALAEGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y D   +   I   G  +  +QHE+DH NGI+F D ++  +   I 
Sbjct: 138 VPGYVVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRINEKEPFAIK 197


>gi|284036700|ref|YP_003386630.1| formylmethionine deformylase [Spirosoma linguale DSM 74]
 gi|283815993|gb|ADB37831.1| formylmethionine deformylase [Spirosoma linguale DSM 74]
          Length = 168

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 13/157 (8%)

Query: 5   PLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTD-----GIGLAAVQIGVLYRL 58
            L++  DP L +   P+ E     + + + ++  VM         G G+AA Q+G++ RL
Sbjct: 6   DLLLLGDPRLYQTCEPVLESELPLVPDWVADLHNVMEEIRAKYQFGRGIAAPQLGIMKRL 65

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + +++        P V INP+++  SD+     + C+S P+    V+R   +T+ Y D +
Sbjct: 66  IYLNVD------RPQVIINPELVAVSDETDELWDDCMSFPNLLVRVRRHKKLTLTYRDEH 119

Query: 119 AQHQIIYADGL-LATCLQHELDHLNGILFIDHLSRLK 154
            Q          ++  +QHE DHLNG L        +
Sbjct: 120 WQTHTWDVTDWRISELIQHEYDHLNGFLCTMRAIDER 156


>gi|238922278|ref|YP_002935792.1| hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750]
 gi|238873950|gb|ACR73658.1| Hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750]
          Length = 136

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + K +V   DP  L + S    + +     ++ ++L+ + +     +G+AA  IGV   +
Sbjct: 1   MVKKIVK--DPFFLAQKSVDATESD---KQVVTDLLDTLIANLDHCVGMAANMIGVKKNI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+              INP I   S ++   +EGCLS+   R    R   I V Y+D N
Sbjct: 56  IVVAAGPFQ-----FPMINPVITNKSGEYQT-EEGCLSLEGVR-PCTRYQDIEVDYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH NG++ 
Sbjct: 109 FKKQHRKYSGWTAQIIQHEIDHCNGVVI 136


>gi|330686209|gb|EGG97823.1| peptide deformylase [Staphylococcus epidermidis VCU121]
          Length = 164

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFS--DDFSVYQEGCLSIP-D 99
           G+GLAA QI V  R++ + L D    +    + +NPK++++S  + +    EGCLS+  +
Sbjct: 39  GVGLAAPQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDEN 98

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R   +T++  D +     +   G  A   QHE+DHLNGI+F DH+  
Sbjct: 99  IPGLVHRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYDHIDD 151


>gi|118497100|ref|YP_898150.1| peptide deformylase [Francisella tularensis subsp. novicida U112]
 gi|208778893|ref|ZP_03246239.1| polypeptide deformylase [Francisella novicida FTG]
 gi|118423006|gb|ABK89396.1| peptide deformylase [Francisella novicida U112]
 gi|208744693|gb|EDZ90991.1| polypeptide deformylase [Francisella novicida FTG]
          Length = 211

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 11  DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           + +L +  +P+  I +++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ 
Sbjct: 23  NKVLYQKCKPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNA 80

Query: 70  KNPM--------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQ 120
           + P         VFINPKI   S     +  GCLS     R  +     I     + + +
Sbjct: 81  RYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGE 140

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
                 D + A   QHE +HL G +++D
Sbjct: 141 KITGKLDSIAAVIFQHEFNHLLGSVYVD 168


>gi|227509076|ref|ZP_03939125.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191463|gb|EEI71530.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 136

 Score =  120 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + KP+    +P+ L + ++P    +S    +I ++L+ + +     +G+AA  IGV  R+
Sbjct: 1   MIKPINH--NPLTLSQRAQPATSADS---QIITDLLDTLRANTQICVGMAANMIGVNKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +        P+  +NP+I+  S  F+  +EGCLS+   R+   R   ITV Y+D N
Sbjct: 56  IVVQMG-----MLPVALVNPEIVEKSVPFAT-KEGCLSLEGQRS-TTRYKEITVTYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +         +A  +QHE+DH  GIL 
Sbjct: 109 FRSHRQGFSDWIAQIIQHEVDHCEGILI 136


>gi|294790517|ref|ZP_06755675.1| peptide deformylase [Scardovia inopinata F0304]
 gi|294458414|gb|EFG26767.1| peptide deformylase [Scardovia inopinata F0304]
          Length = 230

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 64/175 (36%), Gaps = 33/175 (18%)

Query: 5   PLVIFPDPILRRVS-------RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           P+V   +P+LR  +       +P       +  L   M   M +  G+GLA  QIG+   
Sbjct: 30  PIVQMGEPVLRLKTVAYCGQLKP-----KTLEQLKKVMRRTMLNAPGVGLAGPQIGLGLS 84

Query: 58  LVVID--------------------LQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLS 96
           L V++                             P  + INP      D  + + EGCLS
Sbjct: 85  LAVVEDHIRDLSDDEQAEADEAAASADPRGIADFPFHIIINPWYEPMDDASASFFEGCLS 144

Query: 97  IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              Y+A  KR   I   + D +A           A   QHE DHL G ++ID   
Sbjct: 145 FDGYQAVRKRWLNIKAHWFDEDAVEHEAELHQWPARIFQHETDHLKGEVYIDKAE 199


>gi|224283284|ref|ZP_03646606.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 136

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 7/135 (5%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P +  N +      ++ + + +  G  +G+AA  IGV  R++V   QD  + +N
Sbjct: 7   LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIVF--QDKENNRN 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             +  NP+II  SD F    EGCLS+   R    R   ITV Y   + +      DG  A
Sbjct: 65  -AIMFNPRIIAGSDPFDTA-EGCLSLDGER-PTTRYQSITVTYQARSGREYTTAFDGFTA 121

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH+NGI+ 
Sbjct: 122 QIIQHEIDHVNGIII 136


>gi|167757205|ref|ZP_02429332.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402]
 gi|237735710|ref|ZP_04566191.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167703380|gb|EDS17959.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402]
 gi|229381455|gb|EEO31546.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 137

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + +V      L + S P  K +  +   + ++L+ +  ++T  +G+AA  IG+   ++
Sbjct: 1   MIREIVS-DQFRLSQKSLPATKEDLPV---VQDLLDTIIAHATGCVGMAANMIGINKNII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +++        N +V +NP+II         +EGCLS    +   KR   I V Y D + 
Sbjct: 57  IVNDDG-----NYLVMLNPEIIKTMGRLYETEEGCLSHIGVK-KTKRYEKIKVAYYDVDF 110

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +I       A  +QHE+DH NGIL 
Sbjct: 111 KKKIKTFSNYTAQIIQHEIDHCNGILI 137


>gi|313884730|ref|ZP_07818486.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620098|gb|EFR31531.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 188

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 22/173 (12%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLA 48
             K  V   DPIL R +  +   ++++   L  +M + + ++             G+GLA
Sbjct: 3   TMKDFVPEDDPILHREAAEVSFPLSAEDRQLALDMRQFLINSQNDEVAEKYDLRAGVGLA 62

Query: 49  AVQIGVLYRLVVIDLQ------DHAHRKNPMVFINPKIITFSDDFSV--YQEGCLSI-PD 99
           A Q+G   ++  + L+      D        + INP+II  S   +     EGCLS+  +
Sbjct: 63  APQLGYDKKIFCVYLEAYDEENDSTEVMMDEIVINPRIIKHSVKKAALKDGEGCLSVNRE 122

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
               V R   +T+RY + +     I      A   QHE DHL GI+F +H+S 
Sbjct: 123 VPGLVPRPKRVTLRYYNLDGDELEIKLTDYEAMVFQHEFDHLKGIMFYEHISD 175


>gi|227524969|ref|ZP_03955018.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
 gi|227087881|gb|EEI23193.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290]
          Length = 136

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + KP+    +P+ L + ++P    ++    +I ++L+ +++     +G+AA  IGV  R+
Sbjct: 1   MIKPINH--NPLTLSQRAQPATLADT---QIITDLLDTLHANTQICVGMAANMIGVNKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +     R  P+  +NP+I+  S  F+  +EGCLS+   R+   R   ITV Y+D N
Sbjct: 56  IVVQM-----RMLPVALVNPEIVEKSVPFAT-KEGCLSLEGQRS-TTRYKEITVTYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +         +A  +QHE+DH  GIL 
Sbjct: 109 FRSHRQGFSDWIAQIIQHEVDHCEGILI 136


>gi|312870530|ref|ZP_07730648.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
 gi|311093927|gb|EFQ52253.1| peptide deformylase [Lactobacillus oris PB013-T2-3]
          Length = 136

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + KP+    + ILR+VS+P  K +  +   + + L    +   +G+AA  IGV  R+++ 
Sbjct: 1   MIKPINRDVN-ILRQVSQPASKADLPVAQDLRDTL-TANADRCVGMAANMIGVTKRIIIA 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            L         +V  NP+I+  S  + V QEGCLS+   R+   R   I VR+ +   + 
Sbjct: 59  SLGPLQ-----VVMFNPQIVAKSGPYQV-QEGCLSLSGQRS-TTRFQKIRVRFTNEQWEQ 111

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           Q +      A  +QHE DH NGIL 
Sbjct: 112 QELTFTAFPAEIIQHEFDHCNGILI 136


>gi|221108715|ref|XP_002169101.1| PREDICTED: similar to CG31373 CG31373-PA, partial [Hydra
           magnipapillata]
          Length = 143

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 12/114 (10%)

Query: 50  VQIGVLYRLVVIDLQDHAHRKN------------PMVFINPKIITFSDDFSVYQEGCLSI 97
            QIG+  R  V+D                       VFIN +II    D   Y+EGCLSI
Sbjct: 1   PQIGMDIRFFVVDGTPINEGAETEEDIDPSLIDFKKVFINAEIIEEDGDEWAYEEGCLSI 60

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           P  RADV R  F+T+RY D +        +GL A  +QHE DH++GILF DHL+
Sbjct: 61  PGVRADVYRPEFVTIRYFDTDWVEHTETYEGLAARIIQHEYDHIDGILFTDHLT 114


>gi|290579649|ref|YP_003484041.1| putative polypeptide deformylase [Streptococcus mutans NN2025]
 gi|254996548|dbj|BAH87149.1| putative polypeptide deformylase [Streptococcus mutans NN2025]
          Length = 204

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR V++ +   ++ D + L + ML            E M    G+GLAA Q
Sbjct: 18  DIIREGHPTLRAVAQDVTFPLSEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           + +  R++ + +        NP         +  NP+II  S  D      EGCLS+   
Sbjct: 78  LDISKRIIAVLIPNPEDEDGNPPKEAYALKEIMYNPRIIAHSVQDAALADGEGCLSVDRV 137

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R + +T+ Y D N+  + +   G  +  +QHE+DH NGI+F D ++      I 
Sbjct: 138 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINEKNPFEIK 197

Query: 160 KKM 162
           + +
Sbjct: 198 EGL 200


>gi|260584847|ref|ZP_05852592.1| peptide deformylase [Granulicatella elegans ATCC 700633]
 gi|260157504|gb|EEW92575.1| peptide deformylase [Granulicatella elegans ATCC 700633]
          Length = 137

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           +KK +    DP  L + + P   I      +I ++ + + +     +GLAA  IG    +
Sbjct: 1   MKKEI--MKDPFFLSQKAIPANPITD--KQVIVDLQDTLRANRDRCVGLAANMIGSHKAI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +++           +V +NP I   S  +   +EGCLS    ++   R   I VRY D  
Sbjct: 57  IIVAAGPFD-----IVMVNPVITKKSQPYQT-EEGCLSHTGMKS-TTRYQKIEVRYQDAT 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +          A  +QHE+DHL GIL 
Sbjct: 110 GKTHTGTFTEFTAQVIQHEIDHLQGILI 137


>gi|299538334|ref|ZP_07051617.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
 gi|298725921|gb|EFI66513.1| peptide deformylase [Lysinibacillus fusiformis ZC1]
          Length = 191

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRLV 59
           ILR+ ++ +   + +   N +  ML+ + ++             G GL+A QIGV  R+ 
Sbjct: 22  ILRKQTQEVPIPVTTVDRNTLLAMLQYLKNSQNPTLAKKYKLRPGSGLSANQIGVNKRMF 81

Query: 60  VIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSI----PDYRADVKRSAFITVR 113
            +   D       M+ INPKII+ S    +    EGCLS+    P +   V R   I V+
Sbjct: 82  AVLFDDQE-----MMLINPKIISHSLNMIYLPEGEGCLSVNRPVPGF---VPRYERIKVK 133

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             D +    I+   G  A  +QHE+DHLNGI+F D +++ 
Sbjct: 134 AYDIDGHESIVQLQGYGAIVVQHEIDHLNGIMFYDRINKE 173


>gi|33357294|pdb|1LM6|A Chain A, Crystal Structure Of Peptide Deformylase From
           Streptococcus Pneumoniae
          Length = 215

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 24/172 (13%)

Query: 5   PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51
            ++   +P LR V+  +          +   +M  + +     M E M    G+GLAA Q
Sbjct: 30  DIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 89

Query: 52  IGVLYRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSV--YQEGCLSIP-DY 100
           + +  R++ + + +                +  NPKI++ S   +     EG LS+  + 
Sbjct: 90  LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGXLSVDRNV 149

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++ 
Sbjct: 150 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINE 201


>gi|193216926|ref|YP_002000168.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1]
 gi|193002249|gb|ACF07464.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1]
          Length = 185

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 19/173 (10%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNML---------EVMYSTDGIGLAAVQIGVL 55
           L+  P+  LR+ S  I   +  +  +LI  M+         E       +G+AAVQ G+L
Sbjct: 9   LIELPNKTLRQKSNDITLPLTKEDEDLIQKMIFHVDDSQEKET-KFRPAVGVAAVQYGIL 67

Query: 56  YRLVVIDLQDHAHRK-NPMVFINPKIITFSDDFSVYQEG--CLSI----PDYRADVKRSA 108
             +  I L+D  +        INP+++  S+      EG  CLS+    P     V R A
Sbjct: 68  KNVFYILLKDENNEVLFKDALINPQMVAHSEHKLALDEGEGCLSVNQNDPGQAGYVPRYA 127

Query: 109 FITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            + ++ Y     + +     G LA   QHE DHL G LFIDHL++ +   + K
Sbjct: 128 RVVMKAYSYYEKKEKTYDVSGYLAIIFQHEYDHLFGKLFIDHLNKKEPWKVPK 180


>gi|319939890|ref|ZP_08014245.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
 gi|319810901|gb|EFW07220.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
          Length = 204

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++   +P LR V++ +   +    + L + ML            E M    G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKDVTFPLTEQEVILGEKMLQFLRNSQDPATAEKMGLRGGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQD-HAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIP-D 99
           + +  R++ + + +      NP         V  N KI+  S  D      EGCLS+  +
Sbjct: 78  LDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKIVAHSVQDAALAEGEGCLSVDRE 137

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R A +TV Y D   +   I   G  +  +QHE+DH NGI+F D ++      I 
Sbjct: 138 VPGYVVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRINEKDPFAIK 197

Query: 160 KKM 162
           + M
Sbjct: 198 EGM 200


>gi|310287644|ref|YP_003938902.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|311064553|ref|YP_003971278.1| peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313140433|ref|ZP_07802626.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171]
 gi|309251580|gb|ADO53328.1| Peptide deformylase [Bifidobacterium bifidum S17]
 gi|310866872|gb|ADP36241.1| Fms Peptide deformylase [Bifidobacterium bifidum PRL2010]
 gi|313132943|gb|EFR50560.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 141

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 7/135 (5%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P +  N +      ++ + + +  G  +G+AA  IGV  R++V   QD  + +N
Sbjct: 12  LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIVF--QDKENNRN 69

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             +  NP+II  SD F    EGCLS+   R    R   ITV Y   + +      DG  A
Sbjct: 70  -AIMFNPRIIAGSDPFDTA-EGCLSLDGER-PTTRYQSITVTYQARSGREYTTAFDGFTA 126

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH+NGI+ 
Sbjct: 127 QIIQHEIDHVNGIII 141


>gi|308801120|ref|XP_003075341.1| Peptide deformylase (ISS) [Ostreococcus tauri]
 gi|116061895|emb|CAL52613.1| Peptide deformylase (ISS) [Ostreococcus tauri]
          Length = 243

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 30/172 (17%)

Query: 4   KPLVIFPDPILRRVSRPIE--KINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +V    P LR  ++ I+  +I+S +I  LI  M+ VM    G+GLAA Q+G+  R++V
Sbjct: 34  RDVVQAGAPALRDRAKEIDPREIDSAEIQELIGEMVRVMR-ARGVGLAAPQLGIRKRVIV 92

Query: 61  IDLQDHA-----------HRKNP---MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           ++  +              ++ P    V INP +    D  +++ EGCLS+  YRA    
Sbjct: 93  LEDTEEGMSDSSAEELASQKRAPFACTVIINPTLERVGDASAIFFEGCLSVAGYRAC--- 149

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
                           I  A G  A  LQHELDHL+G+L+ D +       +
Sbjct: 150 ---------AATGNRSIYIATGWQARILQHELDHLDGVLYTDRMESRTFRRV 192


>gi|85860534|ref|YP_462736.1| peptide deformylase [Syntrophus aciditrophicus SB]
 gi|85723625|gb|ABC78568.1| peptide deformylase [Syntrophus aciditrophicus SB]
          Length = 189

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR- 69
           ILR  SR +   ++ +  + I  +++  +   D +GLAA QIG+  R+V+   +      
Sbjct: 23  ILRTPSRDLPIPLSREARDQIQTLVDAFLERDDALGLAAPQIGINRRIVIFRNKGFDEEG 82

Query: 70  -----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                K+  + INP+I     +     EGCLS P  + +V R   + VR  D +      
Sbjct: 83  WSKKEKDYDLLINPRITQTRGELVKGAEGCLSCPSIQVEVNRFPEVKVRAFDRHGNRISK 142

Query: 125 YADGLLATCLQHELDHLNGILFID-----HLSRLKRDMITKKMSKL 165
                LA   QHELDHL G L +D     +  R K+    +  +++
Sbjct: 143 RYADFLARVAQHELDHLEGKLIVDCEGPVYFPREKKAFFERIFAQI 188


>gi|213026865|ref|ZP_03341312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 98

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/101 (39%), Positives = 70/101 (69%), Gaps = 3/101 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           ID+ +  +R   +V INP+++  S +  + +EGCLSIP+ R
Sbjct: 61  IDVSE--NRDERLVLINPELLEKSGETGI-EEGCLSIPEQR 98


>gi|323353371|ref|ZP_08087904.1| peptide deformylase [Streptococcus sanguinis VMC66]
 gi|322121317|gb|EFX93080.1| peptide deformylase [Streptococcus sanguinis VMC66]
          Length = 136

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR+ S    + +   + L  ++ + + +   + IGLAA  +GV  R+++       +   
Sbjct: 12  LRQPSEQASRED---LYLAQDLQDTLQANRENCIGLAANMVGVRKRVIIF-----LYGLV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P+V  NP + + S  +   +EGCLS+   R   +R   ITV Y+D N Q Q +   GL A
Sbjct: 64  PVVMFNPVLRSKSGPYQT-EEGCLSLTGSR-PTQRYQEITVDYLDKNWQQQTMTLKGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GIL 
Sbjct: 122 QICQHELDHLEGILI 136


>gi|322784370|gb|EFZ11341.1| hypothetical protein SINV_03231 [Solenopsis invicta]
          Length = 239

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  +  IE      +D   +I  ++ VM + D  GL+  QIG+ +++  I+  
Sbjct: 52  QVGDPVLRGRTMKIEPEVIRMADFQKVIKRLINVMRAYDAYGLSGPQIGLPWQIFAIECT 111

Query: 65  DH-----------AHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +            AH  N +   +FINP++           E C SI  Y A V R+  +
Sbjct: 112 EKTMKGVEESVRKAHEMNVVPMTIFINPELKVIDYTPITLYEECASIQGYSAAVPRAYEV 171

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  ++ +A+     A G  A   QHE DHL G L+I+ + 
Sbjct: 172 EITALNASAEQFTWRARGWSARIAQHEYDHLQGKLYIEKMD 212


>gi|218283087|ref|ZP_03489182.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989]
 gi|218216156|gb|EEC89694.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989]
          Length = 186

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 18/167 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K +++  D  +R  S P+   ++++   L+  ML+ + ++              +G+A
Sbjct: 7   TSKDIILDTDERIRMQSEPVSLPLSNEDKELLQAMLDYVRNSQDDEIAKAEGLQPAVGIA 66

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYR-ADVK 105
           AVQ+GVL +++ + +  +    + +  +NPKII+ S    +    EGCLS+       V 
Sbjct: 67  AVQVGVLKQMIAVVIP-YEDGVDEVALVNPKIISESVQNAYLDNGEGCLSVKGEHPGHVF 125

Query: 106 RSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           R A I VR  D    ++  I A+G  A CLQHE+DHL+G LF DH+ 
Sbjct: 126 RHARIKVRGYDLIQDKNVTISAEGYFAICLQHEIDHLSGTLFYDHID 172


>gi|300173110|ref|YP_003772276.1| peptide deformylase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887489|emb|CBL91457.1| Peptide deformylase [Leuconostoc gasicomitatum LMG 18811]
          Length = 192

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 26/177 (14%)

Query: 1   MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------D 43
           M  +     +      +LR+ +  +   ++ +   L  +M+  +  +             
Sbjct: 1   MTIRFTMDKITRDGASVLRKTAASVPFPLSEEHAQLAKDMMTYLVISQDESQNEQYGLRP 60

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQ--EGCL 95
           G+GLAA Q+    R+  I +      ++           NP II+ S         EGCL
Sbjct: 61  GVGLAAPQVNYSLRMASILVPSLDPHESDETPYFKGTIFNPTIISESIKRGALDVGEGCL 120

Query: 96  SIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           S+  D    V R+  ITVRY D     +II      A   QHE+DHL+G L+ DH+ 
Sbjct: 121 SVDKDVPGFVPRADRITVRYQDETGATKIIKLRDYPAIVFQHEIDHLHGHLYYDHID 177


>gi|149038103|gb|EDL92463.1| component of oligomeric golgi complex 8 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 141

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 14/127 (11%)

Query: 39  MYSTDGIGLAAVQIGVLYRLVVIDLQD--------------HAHRKNPMVFINPKIITFS 84
           M     +GL+A Q+GV  +++V++  D                      V +NP +    
Sbjct: 1   MRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLD 60

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
                + EGC S+  + A V R   + +  +D   +  +  A G  A  +QHE+DHL+G 
Sbjct: 61  SRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHGC 120

Query: 145 LFIDHLS 151
           LFID + 
Sbjct: 121 LFIDKMD 127


>gi|154484915|ref|ZP_02027363.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC
           27560]
 gi|149733868|gb|EDM49987.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC
           27560]
          Length = 136

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59
           + K +V     I  R ++P  K +     ++ ++++ +       +G+AA  IGV   ++
Sbjct: 1   MVKKIVK-GKQIFARKAQPATKAD---KQVVTDLMDTLRENREICVGMAANMIGVNKSII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+              +NP I   S +++  +EGCLS+   R  + R   I V Y++ N 
Sbjct: 57  VVAAGPFQ-----FAMVNPVITKKSGEYTT-EEGCLSLDGVRNCI-RYKEIEVDYLNENF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHE+DH NG++ 
Sbjct: 110 EPKHGKFSGYTAQIIQHEVDHCNGVVI 136


>gi|169827255|ref|YP_001697413.1| peptide deformylase [Lysinibacillus sphaericus C3-41]
 gi|168991743|gb|ACA39283.1| Peptide deformylase [Lysinibacillus sphaericus C3-41]
          Length = 192

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 17/156 (10%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRLV 59
           +LR+ ++ +   +  +  +++ +ML+ + ++             G GL+A QIGV  R+ 
Sbjct: 22  LLRKQTQDVAIPVPLEDRHILFSMLQYLKNSQDPILTKKYKLRPGSGLSANQIGVDKRMF 81

Query: 60  VIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADVKRSAFITVRYMD 116
            +  +DH  +   M+FINPK+++ S    +    EGCLS+       V R   I V+   
Sbjct: 82  AVLFEDHDQKPE-MMFINPKVMSHSLNMIYLPEGEGCLSVNRPVHGFVPRYERIKVKAYT 140

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + Q  I+   G  +  +QHE+DHLNGI+F D +++
Sbjct: 141 IDGQEFILSLKGYESIVVQHEIDHLNGIMFYDRINK 176


>gi|322392329|ref|ZP_08065790.1| peptide deformylase [Streptococcus peroris ATCC 700780]
 gi|321144864|gb|EFX40264.1| peptide deformylase [Streptococcus peroris ATCC 700780]
          Length = 141

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L +VSRP  + +     L  ++ + + +     +GLAA  IGV  R+++ +L        
Sbjct: 17  LSQVSRPASQEDLP---LAKDLQDTLQANKETCVGLAANMIGVQKRVIIFNLG-----MI 68

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           PMV  NP + +F   +   +EGCLS+   R    R   ITV Y D + Q Q I   G  A
Sbjct: 69  PMVMFNPVLQSFEGPYET-EEGCLSLAGVR-PTTRYEKITVSYRDIHWQEQTITLTGFPA 126

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL G + 
Sbjct: 127 QICQHELDHLEGRII 141


>gi|332652856|ref|ZP_08418601.1| peptide deformylase [Ruminococcaceae bacterium D16]
 gi|332518002|gb|EGJ47605.1| peptide deformylase [Ruminococcaceae bacterium D16]
          Length = 136

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + +    +  L + + P    +  I     ++LE +  +    +G+AA  IGV  R++
Sbjct: 1   MIRDICK-DETFLAQKAEPATPDDLPI---AADLLETLEHHKAGCVGMAANMIGVNKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             D     +    MV  NP+II  S  +   +EGCLS+   R   KR   I VR+ +   
Sbjct: 57  AFD-----NEGTYMVMFNPEIIKQSGPYEA-EEGCLSLTGTR-PAKRWKSIKVRWQNEKF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q ++    G  A  +QHE+DH  GI+ 
Sbjct: 110 QERLKTFTGWTAQIIQHEIDHCEGIII 136


>gi|222151046|ref|YP_002560200.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402]
 gi|222120169|dbj|BAH17504.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402]
          Length = 136

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K L+   + +L R  + + + ++ +  LI ++ + ++  +G+G+AA QIGV  ++ ++
Sbjct: 1   MIKQLIEEQNSLLHREVKDVTQFDASLKALIKDLEDTLFHHNGVGIAAPQIGVDLKVALV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +  +NPKI+++S++     EGCLSIP     V RS  I +   D +   
Sbjct: 61  DM----EADGILQLVNPKIVSYSEETESDVEGCLSIPGVFGLVDRSIEIVIEANDLDGNK 116

Query: 122 QIIYADGLLAT 132
             + A   +A 
Sbjct: 117 IEMTAYDDIAR 127


>gi|270292421|ref|ZP_06198632.1| peptide deformylase [Streptococcus sp. M143]
 gi|306824859|ref|ZP_07458203.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|270278400|gb|EFA24246.1| peptide deformylase [Streptococcus sp. M143]
 gi|304433070|gb|EFM36042.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 136

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++ +L        
Sbjct: 12  LSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRVIIFNLG-----LV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           PMV  NP ++++   +   +EGCLS+   R    R   ITV Y D   Q Q I   G  A
Sbjct: 64  PMVMFNPILLSYKGPYET-EEGCLSLTGVR-TTTRYETITVSYRDSKWQEQTITLTGFPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL G + 
Sbjct: 122 QICQHELDHLEGRII 136


>gi|328468001|gb|EGF39025.1| peptide deformylase [Lactobacillus helveticus MTCC 5463]
          Length = 137

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 13/148 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           M  K + I+    L + S      N + +N   ++ + + +     +GLAA  IG   R+
Sbjct: 1   MAVKKI-IYDQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAVGLAANMIGQSKRI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +   +        P + INPKI+  S  +   +EGCLS+   R  V R   ITV Y + +
Sbjct: 57  IAFYIGSL-----PFMMINPKIVRKSGKYMT-EEGCLSLSGQRQTV-RYKEITVTYQNLD 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +         +A  +QHE+DH +GIL 
Sbjct: 110 FKEVTQDFSEFIAETIQHEVDHCDGILI 137


>gi|197301435|ref|ZP_03166515.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC
           29176]
 gi|197299473|gb|EDY33993.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC
           29176]
          Length = 136

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59
           + + ++     I  R ++P  + + +I   + ++L+ + +     +G+AA  IG+   ++
Sbjct: 1   MVRNIIK-GKKIFGRKAKPATEADQEI---VTDLLDTLRANREICVGMAANMIGINKSII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + +            INP I   S ++   +EGCLS+   R    R   I V Y+D N 
Sbjct: 57  AVAVGPFQ-----FAMINPVITKMSGEYKT-EEGCLSLEGTRLC-TRYEEIEVDYLDSNF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q       G  A  +QHE+DH  GI+ 
Sbjct: 110 QFCHGKYSGWTAQIIQHEIDHCKGIVI 136


>gi|307720000|ref|YP_003891140.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
 gi|306978093|gb|ADN08128.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
          Length = 269

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 2   VKKPLVIFPD-PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K ++ +P  P L      +   N ++ +LI ++ + + + +   L+A QIG  Y ++V
Sbjct: 1   MVKEIIKYPTTPSL-EFGANVRHFNQELFDLIKDLKDTIEANNLDALSAFQIGSPYAVIV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D       +  INP+II   +      E     P   A  KR   I + Y D +A 
Sbjct: 60  IKKDD----GEFLELINPRIIKR-EGTITPVESTAYFPGLSAKTKRYEKIKLMYEDRDAN 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q + A+G LA  +Q +LD++ G  F   L   +R ++  K+ 
Sbjct: 115 QQFLEAEGDLAVTIQRKLDYVFGSNFRVRLDDNERKLLDSKLE 157


>gi|223985568|ref|ZP_03635622.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM
           12042]
 gi|223962475|gb|EEF66933.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM
           12042]
          Length = 141

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + +V   DPIL   SRP  +  ++ + +  ++ + +  ++    G+AA  IG   R++
Sbjct: 5   MIREIVT--DPILL--SRPSREATAEDLAVAADLKDTLIAHADHCAGMAANMIGQSVRVI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + + D      P+V INP+II         +EGCLS+P  R   +R   + +RY D  +
Sbjct: 61  AVFVADQ-----PLVLINPQIIKAEGRKYTAEEGCLSLPGTR-RAQRFEKLQLRYQDEQS 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHELDH  GIL 
Sbjct: 115 RIKQRTFSGFTAQVIQHELDHCEGILI 141


>gi|116630410|ref|YP_819563.1| peptide deformylase [Lactobacillus gasseri ATCC 33323]
 gi|238852749|ref|ZP_04643155.1| peptide deformylase [Lactobacillus gasseri 202-4]
 gi|282850746|ref|ZP_06260121.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311111595|ref|ZP_07712992.1| peptide deformylase [Lactobacillus gasseri MV-22]
 gi|116095992|gb|ABJ61144.1| N-formylmethionyl-tRNA deformylase [Lactobacillus gasseri ATCC
           33323]
 gi|238834599|gb|EEQ26830.1| peptide deformylase [Lactobacillus gasseri 202-4]
 gi|282558154|gb|EFB63741.1| peptide deformylase [Lactobacillus gasseri 224-1]
 gi|311066749|gb|EFQ47089.1| peptide deformylase [Lactobacillus gasseri MV-22]
          Length = 137

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYR 57
           M  KP++   D + L+  S  + K +   +   +++ + + + +G   GLAA  IGV  R
Sbjct: 1   MSVKPIIH--DELSLKFKSTLVTKQD---LAAAEDLKDTLIANNGKAAGLAANMIGVQKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ + +        P+V +NP I+  +D +  Y EGCLS+   R   +R   ITV+Y + 
Sbjct: 56  IIALFVGPL-----PIVMLNPIIVKKADKYLAY-EGCLSLEGER-PTERYKKITVKYQNE 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +       +A  +QHE+DH NGIL 
Sbjct: 109 NFETRQQAFSDFVAEVIQHEVDHCNGILI 137


>gi|309798745|ref|ZP_07693009.1| polypeptide deformylase [Streptococcus infantis SK1302]
 gi|308117562|gb|EFO54974.1| polypeptide deformylase [Streptococcus infantis SK1302]
          Length = 136

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L +VS+P  + +  +   + + LE    T  +GLAA  IGV  R+++ ++        PM
Sbjct: 12  LSQVSQPASQEDLPLAKDLQDTLEANRET-CVGLAANMIGVQKRVIIFNIG-----MIPM 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP + +F   +   +EGCLS+   R    R   ITV Y D + + Q I   G  A  
Sbjct: 66  VMFNPVLKSFEGPYET-EEGCLSLTGVR-PTTRYEKITVSYRDIHWKEQTITLTGFPAQI 123

Query: 134 LQHELDHLNGILF 146
            QHELDHL G + 
Sbjct: 124 CQHELDHLEGRII 136


>gi|238925751|ref|YP_002939268.1| peptide deformylase [Eubacterium rectale ATCC 33656]
 gi|238877427|gb|ACR77134.1| peptide deformylase [Eubacterium rectale ATCC 33656]
          Length = 136

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 16/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           MVKK   I  DP+ L + S    + +     ++ ++L+ + +     +G+AA  IGV   
Sbjct: 1   MVKK---IMRDPLFLAQKSEDATEDD---KQVVTDLLDTLKANLDHCVGMAANMIGVKKN 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V+              INP I   S  F   +EGCLS+   R    R   I V Y+D 
Sbjct: 55  IIVVAAGPFQ-----FAMINPVITGKSGAFQT-EEGCLSLDGVR-PCTRYKEIEVDYLDQ 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +     G  A  +QHE+DH NG++ 
Sbjct: 108 NFKKKHGKYTGWTAQIIQHEVDHCNGVVI 136


>gi|307721460|ref|YP_003892600.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
 gi|306979553|gb|ADN09588.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294]
          Length = 272

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 71/150 (47%), Gaps = 5/150 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P P+    +  +   +  +  LI+++ + +   +   L+A QIG  Y +V++
Sbjct: 1   MVRTIIQYPTPLSVEYATDVRIFDETLFALIEDLKDTINENNLDALSAYQIGSYYNVVIV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                      +  INP++I+ S      ++     PD  A+++R   I+V Y D N   
Sbjct: 61  ----KDDSGEFIEMINPRLISHSGTIITDEQTAY-YPDKSAEIQRYDKISVVYQDRNGND 115

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151
           + + A G  +  +Q ++D+  G  F+  +S
Sbjct: 116 KSMQASGEFSIRIQRKIDYTFGATFVQKMS 145


>gi|332024895|gb|EGI65083.1| Peptide deformylase, mitochondrial [Acromyrmex echinatior]
          Length = 240

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
              DP+LR  +  IE      +D   +I +++ VM +    G++  QIG+ +++  I+  
Sbjct: 52  QVGDPVLRGHAMKIEPEVIRMADFQKVITHLINVMRAYKSYGISGPQIGLPWQIFAIECT 111

Query: 65  DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           +                      +FINP++           EGC SI  Y A V R+  +
Sbjct: 112 EEIMEGVEETVKKTHEMNIIPMTIFINPELKVMDYTPITLYEGCESIRGYSAAVPRAYEV 171

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ++ ++ +A+     A G  A   QHE DHL G L+I+ + 
Sbjct: 172 EIKALNASAEQFTWRACGWSARIAQHEYDHLQGKLYIEKMD 212


>gi|237757000|ref|ZP_04585457.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690843|gb|EEP59994.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 121

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 7/122 (5%)

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           AA Q+    R +++D     H+ N +     V  NPKI+    +  +++EGC+S+PDY  
Sbjct: 1   AAPQVNNPIRAIIVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEI-IFREGCMSVPDYTG 59

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +VKR  +I V   D N        +G  A  +QHE+DHL G +FI+ +   K D+  +K+
Sbjct: 60  NVKRFYYIKVEAQDINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKV 118

Query: 163 SK 164
            K
Sbjct: 119 YK 120


>gi|323141001|ref|ZP_08075911.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
 gi|322414538|gb|EFY05347.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067]
          Length = 136

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           ++KP++   +  L + S+P   ++   + +  ++L+ +  ++   +GLAA  IGV   ++
Sbjct: 1   MEKPIIK-DEAFLAQKSQPATFMD---IAVAQDLLDTLAAHADRCVGLAANMIGVQKCVI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +++         +  +NP+II  S  +   +EGCLS+   RA V R   ITV Y D   
Sbjct: 57  AVNIGPTN-----IAMLNPEIIKRSGKYMT-EEGCLSLEGERAAV-RYEKITVAYQDMQF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +       G  A  +QHE+DH +GI+ 
Sbjct: 110 KKCKQSFSGFTAQIIQHEIDHCHGIII 136


>gi|316983220|pdb|3L87|A Chain A, The Crystal Structure Of Smu.143c From Streptococcus
           Mutans Ua159
          Length = 238

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 25/183 (13%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51
            ++    P LR V++ +   +N D + L + ML            E M    G+GLAA Q
Sbjct: 52  DIIREGHPTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 111

Query: 52  IGVLYRLVVIDLQDHAHRKN---------PMVFINPKIITFS--DDFSVYQEGCLSIPDY 100
           + +  R++ + + +   +             V  NP+II  S  D      EG LS+   
Sbjct: 112 LDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGXLSVDRV 171

Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
               V R + +T+ Y D N+  + +   G  +  +QHE+DH NGI+F D ++      I 
Sbjct: 172 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINEKNPFEIK 231

Query: 160 KKM 162
           + +
Sbjct: 232 EGL 234


>gi|313895677|ref|ZP_07829233.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975803|gb|EFR41262.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 137

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRL 58
           + +P+V   D   L + S    K +   +++ +++L+ + S  G  +GLAA  IG   R+
Sbjct: 1   MVRPIVK--DAMFLGQPSEEAVKSD---LSIANDLLDTLKSHVGHCVGLAANMIGEKKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + + +      K+ +V +N +I+  S +    +EGCLS+P  R    R  +I V Y D  
Sbjct: 56  IAVCIG-----KSHLVMLNAEIVKSSTEQYETEEGCLSLPGQR-KTMRHTWIEVTYRDIK 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH NGIL 
Sbjct: 110 FRKQKNKFSGFTAQIIQHEIDHCNGILI 137


>gi|23008036|ref|ZP_00049646.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 145

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 3/137 (2%)

Query: 29  MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88
             +  ++L+ + +   +GL A  IG   RLVVI LQ          +++P ++  S + +
Sbjct: 3   RAVSADVLDTLGAVSAMGLTAPHIGRPERLVVIRLQPDEPHA---TYVDPVVVWASAERA 59

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
            + EG +S+P     V+R A + VRY D + +     A+GL A CLQHE+D L+GI +ID
Sbjct: 60  SHPEGSVSMPGVVEPVERPARVRVRYRDLDGETHEEEAEGLRAACLQHEIDQLDGIFWID 119

Query: 149 HLSRLKRDMITKKMSKL 165
            L+RL+RD + K+ +KL
Sbjct: 120 RLTRLRRDRVLKRFAKL 136


>gi|323465635|gb|ADX69322.1| Polypeptide deformylase [Lactobacillus helveticus H10]
          Length = 137

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 13/148 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           M  K + I+    L + S      N + +N   ++ + + +      GLAA  IG   R+
Sbjct: 1   MAVKKI-IYDQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAAGLAANMIGQSKRI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +   +        P + INPKI+  S  +   +EGCLS+   R  V R   ITV Y + +
Sbjct: 57  IAFYIGSL-----PFMMINPKIVRKSGKYMT-EEGCLSLSGQRQTV-RYKEITVTYQNLD 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +          A  +QHE+DH +GIL 
Sbjct: 110 FKEVTQDFSEFTAETIQHEVDHCDGILI 137


>gi|227511983|ref|ZP_03942032.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
 gi|227084791|gb|EEI20103.1| peptide deformylase [Lactobacillus buchneri ATCC 11577]
          Length = 136

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + KP+    +P+ L + ++P    ++    +I ++L+ +++     +G+AA  IGV  R+
Sbjct: 1   MIKPINH--NPLTLSQRAQPATLADT---QIITDLLDTLHANTQICVGMAANMIGVNKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +        P+  +NP+I+  S  F+  +EGCLS+   R+   R   ITV Y+D N
Sbjct: 56  IVVQMG-----MLPVALVNPEIVEKSVPFAT-KEGCLSLEGQRS-TTRYKEITVTYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +         +A  +QHE+DH  GIL 
Sbjct: 109 LRSHRQGFSDWIAQIIQHEVDHCEGILI 136


>gi|225376046|ref|ZP_03753267.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM
           16841]
 gi|225212066|gb|EEG94420.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM
           16841]
          Length = 136

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + K +    DP  L + S    + +     +I ++L+ + +     +G+AA  IGV   +
Sbjct: 1   MIKKITR--DPMFLAQKSVDATEAD---KQVISDLLDTLRANLDHCVGMAANMIGVSKNI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+              INP I      F   +EGCLS+   R    R   I V Y+D N
Sbjct: 56  IVVAAGPFQ-----FAMINPVITKKMGTFQT-EEGCLSMDGVR-PCTRYKEIEVDYLDTN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH NGI+ 
Sbjct: 109 FKKQHGKYTGWTAQIIQHEIDHCNGIVI 136


>gi|291531177|emb|CBK96762.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum 70/3]
          Length = 136

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 12/136 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +L + S P  + +       +++LE + +     +G+AA  IGVL  ++ I+        
Sbjct: 11  LLSQKSAPATEND---RQTGEDLLETLIANSERCVGMAANMIGVLKNIIAIN-----DNG 62

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           + ++  NP+II     +   +EGCLS+   R   KR   I VRY+D N + +I   +G  
Sbjct: 63  DYLLMYNPEIIKSDGAYET-EEGCLSLDGVR-KTKRYKKIKVRYLDRNFKIKIKTYEGFT 120

Query: 131 ATCLQHELDHLNGILF 146
           A  +QHE+DHL+GI+ 
Sbjct: 121 AQIIQHEVDHLSGIII 136


>gi|167751759|ref|ZP_02423886.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702]
 gi|167655567|gb|EDR99696.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702]
 gi|291557962|emb|CBL35079.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum V10Sc8a]
          Length = 136

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 12/136 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +L + S P  + +       +++LE + +     +G+AA  IG+L  ++ I+        
Sbjct: 11  LLSQKSAPATEND---RQTGEDLLETLIANSEHCVGMAANMIGILKNIIAIN-----DNG 62

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
           + ++  NP+II     +   +EGCLS+   R   KR   I VRY+D N + +I   +G  
Sbjct: 63  DYLLMYNPEIIKSDGAYET-EEGCLSLDGLR-KTKRYKKIKVRYLDRNFKIKIKTYEGFT 120

Query: 131 ATCLQHELDHLNGILF 146
           A  +QHE DHL+GI+ 
Sbjct: 121 AQIIQHETDHLSGIII 136


>gi|256847494|ref|ZP_05552940.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716158|gb|EEU31133.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 136

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + KP+ I    IL +VS P +  +   + +  ++L+ +  +    +GLAA  IG+  R++
Sbjct: 1   MIKPI-IHDQNILTKVSTPAQLSD---VKIAQDLLDTLQAHQESCVGLAANMIGIHKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I +         +  +NP+II     +   +EGCLS+   RA   R   ITV++MD   
Sbjct: 57  AITIGPAR-----VAMLNPEIINHQQPYQT-EEGCLSLNGQRA-TTRYQTITVQFMDIQG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             Q I  +G  A   QHE+DH NGIL 
Sbjct: 110 HRQQITLNGFPAQIAQHEIDHCNGILI 136


>gi|313905668|ref|ZP_07839029.1| formylmethionine deformylase [Eubacterium cellulosolvens 6]
 gi|313469492|gb|EFR64833.1| formylmethionine deformylase [Eubacterium cellulosolvens 6]
          Length = 136

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + K +V   DP+ LR+ S P  K +     +I ++++ + +     +G+AA  IGV  ++
Sbjct: 1   MVKQIVR--DPLFLRQKSEPATKED---KQVITDLMDTLRANQERCVGMAANMIGVRKQI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +         +  +NP I   S  +   +EGCLS+   R+   R   I V Y+D +
Sbjct: 56  IVVAVGPFI-----VPMVNPVITRKSGKYET-EEGCLSLDGVRSC-TRYKEIEVEYLDQD 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +    +   A  +QHE+ H +G L 
Sbjct: 109 FKKKHGKFNDFTAQIIQHEIQHFSGELI 136


>gi|167767071|ref|ZP_02439124.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1]
 gi|167711046|gb|EDS21625.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1]
 gi|291559591|emb|CBL38391.1| N-formylmethionyl-tRNA deformylase [butyrate-producing bacterium
           SSC/2]
          Length = 136

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + K +    DP+ L + S    K +     ++ ++L+ + +     +G+AA  IGV   +
Sbjct: 1   MIKDI--MKDPLFLAQKSTDATKAD---QQVVVDLLDTLRANLDHCVGMAANMIGVKKNI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +            INPKI   S  F   +EGCLS+   R   KR   I V Y+D +
Sbjct: 56  IVVAVGPFQ-----FAMINPKITKKSGVFET-EEGCLSLDGVR-PCKRYKEIEVDYLDQD 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH  GI+ 
Sbjct: 109 FKEQHGKYSGWTAQIIQHEIDHCKGIVI 136


>gi|300362713|ref|ZP_07058888.1| peptide deformylase [Lactobacillus gasseri JV-V03]
 gi|300353141|gb|EFJ69014.1| peptide deformylase [Lactobacillus gasseri JV-V03]
          Length = 137

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYR 57
           M  KP++   D + L+  S    K +   +    ++ + + + +G   GLAA  IGV  R
Sbjct: 1   MSVKPIIH--DELSLKFKSTLATKQD---LTTAKDLKDTLLANNGKAAGLAANMIGVQKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ + +        P+V +NP I+  +D +  Y EGCLS+   R   +R   ITV+Y + 
Sbjct: 56  IIALFVGPL-----PIVMLNPIIVKKTDKYLAY-EGCLSLEGER-PTERYKKITVKYQNE 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +       +A  +QHE+DH NGIL 
Sbjct: 109 NFETRQQDFSDFVAEVIQHEVDHCNGILI 137


>gi|291551092|emb|CBL27354.1| N-formylmethionyl-tRNA deformylase [Ruminococcus torques L2-14]
          Length = 136

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 19/150 (12%)

Query: 2   VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLY 56
           + KP+   + F    L + S    + +     +  ++L+ + +     +G+AA  IGV  
Sbjct: 1   MIKPIMRDIFF----LNQKSELATEAD---KQVAIDLLDTLKANEAGCVGMAANMIGVKK 53

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R++ +++         +   NPKI+  +  +   +EGCLS+   R+  +R   I V Y D
Sbjct: 54  RIIAVNMGSFN-----IAMFNPKIVKRTGAYET-EEGCLSLDGVRSC-RRYQEIEVEYQD 106

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146
            N + +     G  A  +QHE+DH +GIL 
Sbjct: 107 MNFKKKREKYSGWTAQIIQHEIDHCDGILI 136


>gi|47459452|ref|YP_016314.1| formylmethionine deformylase [Mycoplasma mobile 163K]
 gi|47458782|gb|AAT28103.1| formylmethionine deformylase [Mycoplasma mobile 163K]
          Length = 184

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST--------DGIGLAAVQIGVLY 56
           L+  P+ ILR+ S  I   ++ + + L   M+  + ++         G+G+AAVQ G+L 
Sbjct: 8   LIELPNKILRQKSLDINLPLSHEDIELAKKMIYHIKNSQSKNTIFRPGVGVAAVQYGILK 67

Query: 57  RLVVIDLQDHAHRKN-PMVFINPKIITFSDDFSVYQ--EGCLSI----PDYRADVKRSAF 109
           ++  + + D  ++     + INPK++  S      +  EGCLS+    P+    VKRS  
Sbjct: 68  QMFYVYITDEDNKVVFEDLMINPKVLAKSTSKIALRTGEGCLSVNEEHPNQEGYVKRSKR 127

Query: 110 ITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           I V+ Y     +      +G  A   QHELDHLNG LFIDH+ +     I K + 
Sbjct: 128 IVVKGYSYFKKEEVTHDLNGYPAIVFQHELDHLNGKLFIDHIDKENNWFIEKDLE 182


>gi|15829160|ref|NP_326520.1| polypeptide deformylase 2 (PDF 2) (formylmethionine deformylase 2)
           [Mycoplasma pulmonis UAB CTIP]
 gi|23396551|sp|Q98PN3|DEF_MYCPU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|14090104|emb|CAC13862.1| POLYPEPTIDE DEFORMYLASE 2 (PDF 2) (FORMYLMETHIONINE DEFORMYLASE 2)
           [Mycoplasma pulmonis]
          Length = 198

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 31/185 (16%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51
           M K  +V  P  +LR+ S+ +   +N   + L + M+  +  +         G+G+AAVQ
Sbjct: 4   MFKVEIVQLPKKVLRQKSKNVNIPLNKTNIELAEKMIYHIDDSQGPNTKFRPGVGVAAVQ 63

Query: 52  IGVLYRLVVIDLQ--------DHAHRKNPM-------VFINPKIITFSDDFSVY--QEGC 94
            G+L  +  + +         D +    P        V  NP++I  SD+       EGC
Sbjct: 64  YGILKNVFYVCVPNDSRLTQRDSSQEVKPEDKYLFRDVIFNPEVIWKSDEMVAISQGEGC 123

Query: 95  LSI----PDYRADVKRSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDH 149
           LS+    P+    V+R   I V+      + ++I+   G +A   QHELDHLNG+LFID 
Sbjct: 124 LSVDESWPNQEGLVRRHMEIKVKGYSYFQKKEMIWHVKGYVAIVFQHELDHLNGMLFIDR 183

Query: 150 LSRLK 154
           +   +
Sbjct: 184 IDPKR 188


>gi|166030770|ref|ZP_02233599.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC
           27755]
 gi|166029352|gb|EDR48109.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC
           27755]
          Length = 136

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYR 57
           + + +V     +L   + S P  + +     +  ++L+ +  +    +G+AA  IGV  R
Sbjct: 1   MVREVV---HDVLFLGQKSEPATQAD---KQVAIDLLDTLKAHEEGCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ +++         +   NP+I+  S  +   +EGCLS+   R    R   I + Y D 
Sbjct: 55  IIAVNMGFMN-----VAMFNPRIVKKSGSYQT-EEGCLSLIGVR-PCTRYQEIELEYQDM 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + Q     G +A  +QHE+DH NGI+ 
Sbjct: 108 NWKKQRQKYTGWIAQIIQHEVDHCNGIII 136


>gi|294155360|ref|YP_003559744.1| peptide deformylase [Mycoplasma crocodyli MP145]
 gi|291600027|gb|ADE19523.1| peptide deformylase [Mycoplasma crocodyli MP145]
          Length = 183

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQ 51
           M +  LV  P  +LR  S+ +   +  + + L + M+  +  +         G+G+AAVQ
Sbjct: 1   MYEVKLVKLPKKVLREKSKDVPIPLLPEDVELAEKMIYHIDDSQKEGSKFRAGVGVAAVQ 60

Query: 52  IGVLYRLVVIDLQDHAHRKN--PMVFINPKIITFSDDFSV--YQEGCLSI----PDYRAD 103
            G+L  +  + ++D          V  NPKII+ S+  +     EGCLS+    P     
Sbjct: 61  YGILKNVFYVHVRDFDKDIEIFRDVLFNPKIISKSETLTALSDGEGCLSVSESWPGQSGL 120

Query: 104 VKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V RSA I V       +        G +A   QHELDHL G LFID + +
Sbjct: 121 VHRSARIVVEAYSYMQKKVVEFDVFGYVAIVFQHELDHLEGKLFIDRIDK 170


>gi|126650157|ref|ZP_01722390.1| peptide deformylase [Bacillus sp. B14905]
 gi|126593329|gb|EAZ87291.1| peptide deformylase [Bacillus sp. B14905]
          Length = 192

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 83/156 (53%), Gaps = 17/156 (10%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQIGVLYRLV 59
           +LR+ ++ +   +  +  +++ +ML+ + ++             G GL+A QIGV  R+ 
Sbjct: 22  LLRKQTQDVAIPVPLEDRHILLSMLQYLKNSQDPILIKKYKLRSGSGLSANQIGVDKRMF 81

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPD-YRADVKRSAFITVRYMD 116
            +  ++H  + + M+FINPK+++ S +     EG  CLS+       V R   I V+  +
Sbjct: 82  AVLFENHDQK-HEMMFINPKVMSHSFNMIYLPEGEGCLSVNRPVHGFVPRYERIKVKAYN 140

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + Q  I+   G  +  +QHE+DHLNGI+F D +++
Sbjct: 141 IDGQEFIMSLKGYESIVVQHEIDHLNGIMFYDRINK 176


>gi|299116829|emb|CBN74941.1| chloroplast peptide deformylase (Partial) [Ectocarpus siliculosus]
          Length = 209

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 2/114 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ- 64
           ++ +P P LR  +  IE  + D+  L  +M ++MY+  G+GLAA Q+GV  RL+V + + 
Sbjct: 95  ILKYPHPALRAENDEIEVFDDDVKKLARDMFKIMYAAKGVGLAAPQVGVNKRLMVFNPEG 154

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  +  +  + +NPKI+         +EGCLS P      K  +  T+RY +  
Sbjct: 155 DAKNWLDEAILVNPKIVASGKGRITAEEGCLSFPGMEGK-KDWSTPTMRYSNIQ 207


>gi|161506686|ref|YP_001576636.1| peptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|260101789|ref|ZP_05752026.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
 gi|160347675|gb|ABX26349.1| Polypeptide deformylase [Lactobacillus helveticus DPC 4571]
 gi|260084400|gb|EEW68520.1| peptide deformylase [Lactobacillus helveticus DSM 20075]
          Length = 137

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           M  K + I+    L + S      N + +N   ++ + + +      GLAA  IG   R+
Sbjct: 1   MAVKKI-IYDQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAAGLAANMIGQSKRI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +   +        P + INPKI+  S  +   +EGCLS+   R  V R   ITV Y + +
Sbjct: 57  IAFYIGSL-----PFMMINPKIVRKSGKYMT-EEGCLSLSGQRQTV-RYKEITVTYQNLD 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +         +A  +QHE+DH +GIL 
Sbjct: 110 FKEVTQDFSEFIAETIQHEVDHCDGILI 137


>gi|148992559|ref|ZP_01822227.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|149003222|ref|ZP_01828118.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|149011789|ref|ZP_01832985.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|168488787|ref|ZP_02712986.1| polypeptide deformylase [Streptococcus pneumoniae SP195]
 gi|237650234|ref|ZP_04524486.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974]
 gi|237820884|ref|ZP_04596729.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758682|gb|EDK65679.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69]
 gi|147764220|gb|EDK71152.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75]
 gi|147928576|gb|EDK79590.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68]
 gi|183572696|gb|EDT93224.1| polypeptide deformylase [Streptococcus pneumoniae SP195]
 gi|332072344|gb|EGI82827.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA17570]
          Length = 136

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANHDTCVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++F   +   +EGCLS+   R+  KR   I V Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRVAYRDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|293365837|ref|ZP_06612542.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|307703294|ref|ZP_07640239.1| polypeptide deformylase family protein [Streptococcus oralis ATCC
           35037]
 gi|322375601|ref|ZP_08050113.1| peptide deformylase [Streptococcus sp. C300]
 gi|291315661|gb|EFE56109.1| peptide deformylase [Streptococcus oralis ATCC 35037]
 gi|307623160|gb|EFO02152.1| polypeptide deformylase family protein [Streptococcus oralis ATCC
           35037]
 gi|321279309|gb|EFX56350.1| peptide deformylase [Streptococcus sp. C300]
          Length = 136

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++ +L        
Sbjct: 12  LSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRVIIFNLG-----LV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           PMV  NP ++++   +   +EGCLS+   R+   R   ITV Y D   Q Q I   G  A
Sbjct: 64  PMVMFNPVLLSYIGPYET-EEGCLSLTGVRS-TTRYETITVSYRDSKWQEQTITLTGFPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL G + 
Sbjct: 122 QICQHELDHLEGRII 136


>gi|261367618|ref|ZP_05980501.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
 gi|282570406|gb|EFB75941.1| peptide deformylase [Subdoligranulum variabile DSM 15176]
          Length = 136

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 19/150 (12%)

Query: 2   VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDG-IGLAAVQIGVLY 56
           + + +   VIF    L + + P    +  +     ++LE + Y  DG +G+AA  IGV  
Sbjct: 1   MIREICKDVIF----LAQKAEPATPEDLPV---AADLLETLEYHKDGCVGMAANMIGVNK 53

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R++  D +         V  NP+I+  S  +   +EGCLS+   R  VKR   I V++ +
Sbjct: 54  RIIAFDNEGKYQ-----VMFNPEILRRSGPYEA-EEGCLSLTGVR-PVKRWKTIKVQWQN 106

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146
              Q +I    G  A  +QHE+DH  GI+ 
Sbjct: 107 EKFQQRIKNFTGWTAEIIQHEIDHCEGIII 136


>gi|312868505|ref|ZP_07728705.1| peptide deformylase [Streptococcus parasanguinis F0405]
 gi|311096250|gb|EFQ54494.1| peptide deformylase [Streptococcus parasanguinis F0405]
          Length = 185

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S      +     L  ++ + + +   + +GLAA  IGV  R ++I +        
Sbjct: 61  LGQKSEEATPED---RTLALDLQDTLNAHLLECVGLAANMIGVKKRAIIIRMGSEN---- 113

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP ++     +   +EGCLS+   R    R   I+V Y D N + + I+  G  A
Sbjct: 114 -LVLFNPVLLEKKKPYQT-EEGCLSLVGSR-PTTRYEEISVAYRDVNWKAKTIHLSGFPA 170

Query: 132 TCLQHELDHLNGILF 146
              QHE+DHL GI+ 
Sbjct: 171 QICQHEMDHLEGIII 185


>gi|291524049|emb|CBK89636.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale DSM 17629]
 gi|291527891|emb|CBK93477.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale M104/1]
          Length = 136

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 16/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           MVKK   I  DP+ L + S    + +     ++ ++L+ + +     +G+AA  IGV   
Sbjct: 1   MVKK---IMRDPLFLAQKSVDATEDD---KQVVTDLLDTLRANLDHCVGMAANMIGVKKN 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V+              INP I   S  F   +EGCLS+   R    R   I V Y+D 
Sbjct: 55  IIVVAAGPFQ-----FAMINPVITGKSGAFQT-EEGCLSLDGVR-PCTRYKEIEVDYLDQ 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +     G  A  +QHE+DH NG++ 
Sbjct: 108 NFKKKHGKYTGWTAQIIQHEVDHCNGVVI 136


>gi|319946366|ref|ZP_08020604.1| peptide deformylase [Streptococcus australis ATCC 700641]
 gi|319747519|gb|EFV99774.1| peptide deformylase [Streptococcus australis ATCC 700641]
          Length = 148

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57
           M++K +    DP  L ++S    K +   + L  ++ + + +     +G+AA  IGV  R
Sbjct: 12  MMEKAI--MKDPFFLSQISEEATKED---LYLAQDLQDTLRAHQDSCVGMAANMIGVRKR 66

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++I          P+V  NP ++     +   +EGCLS+   R    R   I V Y D 
Sbjct: 67  VIIIQFG-----LMPLVLFNPVLVKKEGVYET-EEGCLSLAGSR-KTSRFEKIQVSYRDM 119

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + Q+I  +G  A   QHELDHL GIL 
Sbjct: 120 NWKPQLISLEGFAAQICQHELDHLEGILI 148


>gi|262283351|ref|ZP_06061117.1| peptide deformylase [Streptococcus sp. 2_1_36FAA]
 gi|262260842|gb|EEY79542.1| peptide deformylase [Streptococcus sp. 2_1_36FAA]
          Length = 136

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVV 60
            K ++      L++ S    K +   + L  ++ + + +   + +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LQQKSEVAVKSD---LYLAQDLQDTLLANQENCVGLAANMIGVKKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                  +   P++  NP +   S  +   +EGCLS+   R+   R   ITV Y+D N Q
Sbjct: 58  F-----MYGMVPIIMFNPVLRAKSGPYQT-EEGCLSLVGSRS-TTRYQEITVDYLDRNWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I      A   QHELDHL GIL 
Sbjct: 111 PQTITLKDFPAQICQHELDHLEGILI 136


>gi|154500866|ref|ZP_02038904.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC
           29799]
 gi|150270366|gb|EDM97692.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC
           29799]
          Length = 136

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59
           + + +    +  L + + P    +   + +  ++LE +       +G+AA  IGV  R++
Sbjct: 1   MIRDICK-DETFLAQKAEPATPDD---IQIAADLLETLEHHKDGCVGMAANMIGVNKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
             D     +    MV  NP+I+  S  +   +EGCLS+   R   KR   I VR+ + + 
Sbjct: 57  AFD-----NEGTYMVMFNPEIVKKSGPYDA-EEGCLSLTGIR-PAKRWQSIKVRWQNEHF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q ++    G  A  +QHELDH  GI+ 
Sbjct: 110 QERLKAFTGWTAQIIQHELDHCEGIII 136


>gi|28379384|ref|NP_786276.1| peptide deformylase [Lactobacillus plantarum WCFS1]
 gi|254557520|ref|YP_003063937.1| peptide deformylase [Lactobacillus plantarum JDM1]
 gi|308181597|ref|YP_003925725.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28272223|emb|CAD65131.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1]
 gi|254046447|gb|ACT63240.1| peptide deformylase [Lactobacillus plantarum JDM1]
 gi|308047088|gb|ADN99631.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 136

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59
           + +P+V  P  +    S P +        ++ ++L+ + +   + +G+AA  IGV  +++
Sbjct: 1   MIRPIVHDPAAL----SVPADLATPADTQVLTDLLDTLAAHTDNCVGMAANMIGVNKQII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+ L   A     +  INPKII     +   +EGCLS+P  R    R   ITV+Y D + 
Sbjct: 57  VVQLGPFA-----IAMINPKIIDHHGTYET-KEGCLSLPGER-PTSRYHQITVKYKDQHF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q    +   A  +QHELDH  G L 
Sbjct: 110 KPQQQRFNDFTAQIIQHELDHCAGKLI 136


>gi|307705978|ref|ZP_07642803.1| polypeptide deformylase family protein [Streptococcus mitis SK564]
 gi|307620488|gb|EFN99599.1| polypeptide deformylase family protein [Streptococcus mitis SK564]
          Length = 136

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANREICVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++F   +   +EGCLS+   R   KR   I V Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLSFEGPYET-EEGCLSLVGVR-PTKRYETIKVAYRDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|293375957|ref|ZP_06622217.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325841958|ref|ZP_08167535.1| peptide deformylase [Turicibacter sp. HGF1]
 gi|292645394|gb|EFF63444.1| peptide deformylase [Turicibacter sanguinis PC909]
 gi|325489791|gb|EGC92146.1| peptide deformylase [Turicibacter sp. HGF1]
          Length = 136

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59
           + +P++   +  L + S P  K +   + +++++++ + +     +G+AA  IG+  R++
Sbjct: 1   MIRPIMK-DEKFLAQKSVPATKAD---LAVVEDLIDTLRANLERCVGMAANMIGIKKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V  + +       +  INP I+     +   +E CLS+  +R +  R   I V Y+D   
Sbjct: 57  VFAIGEII-----VPMINPVIVKKEKSYVT-EESCLSLVGFR-ETTRYETIEVEYLDKQF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             Q     G +A  +QHE+DH NGI+ 
Sbjct: 110 NKQKGTFTGFVAQIIQHEIDHCNGIII 136


>gi|168483572|ref|ZP_02708524.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00]
 gi|172043063|gb|EDT51109.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00]
          Length = 136

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++F   +   +EGCLS+   R+  KR   I V Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRVAYRDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|307708362|ref|ZP_07644829.1| peptide deformylase [Streptococcus mitis NCTC 12261]
 gi|307615808|gb|EFN95014.1| peptide deformylase [Streptococcus mitis NCTC 12261]
          Length = 136

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANRETCVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++ S+     +EGCLS+   R   KR   I V Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLS-SEGVYETEEGCLSLTGVR-PTKRYEIIRVAYCDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|227893768|ref|ZP_04011573.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
 gi|227864413|gb|EEJ71834.1| peptide deformylase [Lactobacillus ultunensis DSM 16047]
          Length = 137

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 13/148 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           M  + + I     L + S      N   + + +++ + + +      GLAA  IG   R+
Sbjct: 1   MTAQNI-IHDQLFLSQKS---TIANKGDLKIAEDLRDTLLANRNKAAGLAANMIGKSKRI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +   +        P + INP+II  S ++   +EGCLS+   R + KR   ITV Y + N
Sbjct: 57  IAFYVGPF-----PFLMINPQIIKKSGEYLA-KEGCLSLDGER-EAKRYEKITVSYQNLN 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +     G +A  +QHE+DH NGIL 
Sbjct: 110 FEKETQSFSGFVAETIQHEVDHCNGILI 137


>gi|289168375|ref|YP_003446644.1| predicted polypeptide deformylase [Streptococcus mitis B6]
 gi|288907942|emb|CBJ22782.1| predicted polypeptide deformylase [Streptococcus mitis B6]
          Length = 136

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++ +L        
Sbjct: 12  LSQVSQPASQED---LYLARDLQDTLLANRETCVGLAANMIGVQKRVIIFNLG-----LV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P+V  NP +++F   +   +EGCLS+   R   KR   I V Y D   Q Q I   G  A
Sbjct: 64  PVVMFNPVLLSFDGLYET-EEGCLSLTGVR-PTKRYETIRVAYRDSKWQEQTITLTGFPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL G + 
Sbjct: 122 QICQHELDHLEGRII 136


>gi|317499718|ref|ZP_07957976.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893024|gb|EFV15248.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 136

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + K +    DP+ L + S    K +     ++ ++L+ + +     +G+AA  IGV  ++
Sbjct: 1   MIKDI--MKDPLFLAQKSTDATKAD---QQVVVDLLDTLRANLDHCVGMAANMIGVKKKI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+ +            INPKI   S  F   +EGCLS+   R   KR   I V Y+D +
Sbjct: 56  IVVAVGPFQ-----FAMINPKITKKSGVFET-EEGCLSLDGVR-PCKRYKEIEVDYLDQD 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q     G  A  +QHE+DH  GI+ 
Sbjct: 109 FKKQHGKYSGWTAQIIQHEIDHCKGIVI 136


>gi|324993584|gb|EGC25504.1| peptide deformylase [Streptococcus sanguinis SK405]
 gi|324995104|gb|EGC27016.1| peptide deformylase [Streptococcus sanguinis SK678]
          Length = 136

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + + +   + IGLAA  IGV  R ++       +   P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRAIIF-----LYGLVPVVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +EGCLS+   R   +R   ITV Y+D N Q Q +   GL A   QH
Sbjct: 69  NPVLRSKSGPYQT-EEGCLSLTGSR-PTQRYQEITVDYLDKNWQQQTMTLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GIL 
Sbjct: 127 ELDHLEGILI 136


>gi|116334552|ref|YP_796079.1| peptide deformylase [Lactobacillus brevis ATCC 367]
 gi|116099899|gb|ABJ65048.1| N-formylmethionyl-tRNA deformylase [Lactobacillus brevis ATCC 367]
          Length = 136

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 12/142 (8%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQ 64
           V+  +  L + S+P    +      I ++++ + +   + +G+AA  IGV  R++V+D+ 
Sbjct: 5   VVHDEARLVQRSQPATPADG---QTITDLIDTLRANQENCVGMAANMIGVNRRIIVVDMG 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                  P+  INP+I   +  +   QEGCLS+   R    R   I V +++ N Q Q  
Sbjct: 62  IL-----PVAMINPEITKMAGPYDT-QEGCLSLSGER-PTHRFKTIDVTFLNQNFQKQRQ 114

Query: 125 YADGLLATCLQHELDHLNGILF 146
              G +A  +QHE++H NGIL 
Sbjct: 115 TFTGFVAQIIQHEVEHCNGILI 136


>gi|239625206|ref|ZP_04668237.1| Def1 [Clostridiales bacterium 1_7_47_FAA]
 gi|239519436|gb|EEQ59302.1| Def1 [Clostridiales bacterium 1_7_47FAA]
          Length = 160

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 13/167 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIG--LAAVQIGVL 55
           ++K +++   P L  V   + +      +++   + + L       G+G  +AA QIGV 
Sbjct: 1   MEKTILLLGHPDLYEVCSEVTEEELPWMAEVKEDLKDTLLAFRKRYGVGRAIAAPQIGVK 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R++      + H   P++FINP++     +     + C+S PD    V+R     + Y 
Sbjct: 61  KRVI------YRHLDTPVLFINPRLEFPDKEEMEVMDDCMSFPDLLVRVRRYKRCIIHYR 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +   +  +G +A  +QHE DHL+GIL         R  + K+ 
Sbjct: 115 DEQWKECSLAFEGDMAELIQHEYDHLDGILATMRAID-DRAFVMKEY 160


>gi|322386870|ref|ZP_08060494.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
 gi|321269152|gb|EFX52088.1| peptide deformylase [Streptococcus cristatus ATCC 51100]
          Length = 136

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58
           ++K +V   DP  L++ S P  K++   + L  ++ + +  +    +GLAA  IG   R+
Sbjct: 1   MQKSIVK--DPFFLQQKSVPATKVD---LFLAQDLQDTLLAHRESCVGLAANMIGSQKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++       +   PMV  NP +I  S  +   +EGCLS+   R  + R   ITV Y+D N
Sbjct: 56  IIF-----MYVMLPMVMFNPVLIQKSGPYET-EEGCLSLAGSRPTI-RYQKITVEYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              + I  +   A   QHELDHL GIL 
Sbjct: 109 WLKKTITLEDFPAQICQHELDHLEGILI 136


>gi|255523790|ref|ZP_05390755.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
 gi|255512493|gb|EET88768.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
          Length = 165

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYS-----TDGIGLAAVQIGVL 55
           + K +++  +  L + S  ++K     I   + ++ + +         G  +AA QIGV 
Sbjct: 1   MLKEILLLGNDALYKKSLLVQKEELDSIKGTVLDLHDTLIDFRKKYNAGRAIAAPQIGVF 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ + +        P+VFINP +   + +     + C+S P+    V R    TV Y 
Sbjct: 61  KRLIYMYID------KPIVFINPILKFDNKEIMEVMDDCMSFPNLLVKVNRYKECTVMYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           D +   + I  +G L+  +QHE DHL+GIL        K   + K+
Sbjct: 115 DIDFIDRTIKFEGNLSELIQHEYDHLDGILATMRAIDNKSFYLKKQ 160


>gi|324990225|gb|EGC22163.1| peptide deformylase [Streptococcus sanguinis SK353]
          Length = 136

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +EGCLS+   R   +R   ITV Y+D N Q + +   GL A   QH
Sbjct: 69  NPVLRSKSGPYQT-EEGCLSLTGSR-PTQRYQEITVDYLDKNWQQRTMTLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GIL 
Sbjct: 127 ELDHLEGILI 136


>gi|306829860|ref|ZP_07463047.1| peptide deformylase [Streptococcus mitis ATCC 6249]
 gi|304427871|gb|EFM30964.1| peptide deformylase [Streptococcus mitis ATCC 6249]
          Length = 136

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L +VS+P  + +   + L  ++ + + +     +GLAA  IG   R+++ +L        
Sbjct: 12  LSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGEQKRVIIFNLG-----LV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           PMV  NP ++++   +   +EGCLS+   R    R   I V Y D   Q Q I   G  A
Sbjct: 64  PMVMFNPILLSYKGPYET-EEGCLSLTGVR-PTTRYETIKVSYRDSKWQEQTITLTGFPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL G + 
Sbjct: 122 QICQHELDHLEGRII 136


>gi|332523659|ref|ZP_08399911.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314923|gb|EGJ27908.1| peptide deformylase [Streptococcus porcinus str. Jelinkova 176]
          Length = 136

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +V   DP  L++VS+   K +  I   + + L      + +GLAA  IG   R+++
Sbjct: 1   MIRRIVK--DPFFLQQVSKQATKEDLPIGKDLQDTLAFHRE-NCLGLAANMIGESKRIII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I +         +V  NPK++  SD +   +E CLS+   +   KR   ITV Y+D N +
Sbjct: 58  ISMGFVD-----LVMFNPKLVKKSDSYIT-EESCLSLSGNQ-KTKRYQKITVEYLDLNWR 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +  +GL A   QHELDHL+GIL 
Sbjct: 111 KKSLSLNGLAAQICQHELDHLDGILI 136


>gi|194323397|ref|ZP_03057174.1| polypeptide deformylase [Francisella tularensis subsp. novicida
           FTE]
 gi|194322252|gb|EDX19733.1| polypeptide deformylase [Francisella tularensis subsp. novicida
           FTE]
          Length = 186

 Score =  115 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 12/143 (8%)

Query: 16  RVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM- 73
           +  +P+  I +++I N+I  M E M   +GIGLAA QIG  Y++ +I+  D ++ + P  
Sbjct: 3   QKCKPVADIQSAEIQNIIIEMHEKM-QGNGIGLAANQIGYPYQIFMIEF-DSSNARYPFS 60

Query: 74  -------VFINPKIITFSDDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQHQIIY 125
                  VFINPKI   S     +  GCLS     R  +     I     + + +     
Sbjct: 61  FDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEKITGK 120

Query: 126 ADGLLATCLQHELDHLNGILFID 148
            D + A   QHE +HL G +++D
Sbjct: 121 LDSIAAVIFQHEFNHLLGSVYVD 143


>gi|153855447|ref|ZP_01996578.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814]
 gi|149752101|gb|EDM62032.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814]
          Length = 136

 Score =  115 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 19/150 (12%)

Query: 2   VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLY 56
           + +P+   + F    L + S P  + +     +  ++L+ +  +    +G+AA  IGV  
Sbjct: 1   MIRPIMKDIFF----LNQRSEPATEAD---KQVAVDLLDTLKAHEEGCVGMAANMIGVKK 53

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            ++ +++         +   NPKI+  S  +   +EGCLS+   R    R   I V Y D
Sbjct: 54  CIIAVNMGFMN-----VAMFNPKIVKRSGKYET-EEGCLSLTGVR-KCTRYQEIEVEYQD 106

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146
            N + Q     G  A  +QHE+DH +GI+ 
Sbjct: 107 MNFKKQRQKYTGWTAQIIQHEVDHCHGIVI 136


>gi|25011446|ref|NP_735841.1| peptide deformylase [Streptococcus agalactiae NEM316]
 gi|77411175|ref|ZP_00787527.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|24412984|emb|CAD47063.1| unknown [Streptococcus agalactiae NEM316]
 gi|77162793|gb|EAO73752.1| polypeptide deformylase [Streptococcus agalactiae CJB111]
 gi|319745273|gb|EFV97591.1| peptide deformylase [Streptococcus agalactiae ATCC 13813]
          Length = 136

 Score =  115 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + KP+V   D   L++ S+   + +   ++L  ++ + +++     +G+AA  IG L R+
Sbjct: 1   MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSLKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++I++         +V  NP ++  SD +   +E CLS+   R+  +R   IT+ Y D N
Sbjct: 56  IIINVGITN-----LVMFNPVLVAKSDPYET-EESCLSLVGCRS-TQRYRHITISYRDIN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q I      A   QHELDHL GIL 
Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136


>gi|301775659|ref|XP_002923264.1| PREDICTED: peptide deformylase, mitochondrial-like [Ailuropoda
           melanoleuca]
 gi|281349917|gb|EFB25501.1| hypothetical protein PANDA_012363 [Ailuropoda melanoleuca]
          Length = 141

 Score =  115 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 14/127 (11%)

Query: 39  MYSTDGIGLAAVQIGVLYRLVVIDLQD--------------HAHRKNPMVFINPKIITFS 84
           M     +GL+A Q+GV  +++ ++  +                      VF+NP +    
Sbjct: 1   MRRRRCVGLSAPQLGVPLQVLALEFPEALFRACAPGLREARQMEPFPLRVFVNPSLRVLD 60

Query: 85  DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144
                + EGC S+  + A V R   + +  +D   +  +  A G  A  +QHE+DHL G 
Sbjct: 61  SRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEQVVWQASGWAARIIQHEMDHLQGC 120

Query: 145 LFIDHLS 151
           LFID + 
Sbjct: 121 LFIDKMD 127


>gi|302870584|ref|YP_003839221.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315506821|ref|YP_004085708.1| transcriptional regulator, xre family [Micromonospora sp. L5]
 gi|302573443|gb|ADL49645.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315413440|gb|ADU11557.1| transcriptional regulator, XRE family [Micromonospora sp. L5]
          Length = 510

 Score =  115 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 11/156 (7%)

Query: 6   LVIFPDPILRRVSRPIEKINSD--IMNLIDNML-------EVMYSTDGIGLAAVQIGVLY 56
           +V   D +LR+ +R  +    +     +ID +        E+   + G+GLAA Q+G+ +
Sbjct: 338 IVQRGDDLLRQRARQFDLPADEQHARQVIDRLAAMLVRLDELHPFSKGVGLAAPQLGIGW 397

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              ++   D A   +P+V +NP+++  + +     EGCLS  D+R  V R   I V +  
Sbjct: 398 SAALVRPADRA--ADPVVLLNPRVVDAATETDEQYEGCLSFFDHRGLVPRPLRIDVEHAL 455

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +    I   +  +A  + HE+DHL G L++D ++ 
Sbjct: 456 WDGSRVITSYEYAMARLVAHEIDHLEGRLYVDRMAP 491


>gi|307181864|gb|EFN69304.1| Peptide deformylase, mitochondrial [Camponotus floridanus]
          Length = 238

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 8   IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-- 62
              DP+LR  +  IE       D   +I +++ +M S D  G++  QIG+ +++  I+  
Sbjct: 51  QIGDPVLRGHAMKIEPEVIKLEDFQKVITHLINIMRSYDACGMSGPQIGLPWQIFAIEHT 110

Query: 63  -----LQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
                  D               +FINP++        +  EGC S+  Y A V R+  I
Sbjct: 111 MEHMKTSDEVIKKAYEMEVIPVTIFINPELKIIDHTPIILYEGCESVRGYSAAVPRAYEI 170

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +  ++ +A+       G  A   QHE DHL G L+ID + 
Sbjct: 171 EITALNASAEQFTWRGRGWSARIAQHEYDHLQGELYIDKMD 211


>gi|22537481|ref|NP_688332.1| peptide deformylase [Streptococcus agalactiae 2603V/R]
 gi|22534360|gb|AAN00205.1|AE014253_3 polypeptide deformylase, putative [Streptococcus agalactiae
           2603V/R]
          Length = 136

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + KP+V   D   L++ S+   + +   ++L  ++ E +++     +G+AA  IG L R+
Sbjct: 1   MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQETLHANQNYCVGMAANMIGSLKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++I++         +V  NP ++  SD +   +E CLS+   R+  +R   IT+ Y D N
Sbjct: 56  IIINVGITN-----LVMFNPVVVAKSDPYET-EESCLSLVGCRS-TQRYCHITISYRDIN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q I      A   QHELDHL GIL 
Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136


>gi|226322583|ref|ZP_03798101.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758]
 gi|225209077|gb|EEG91431.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758]
          Length = 136

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 19/150 (12%)

Query: 2   VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLY 56
           + KP+   + F    LR+ +    K +  +     ++L+ + + +   +G+AA  IGV  
Sbjct: 1   MVKPIMRDLFF----LRQKAEKATKGDFPV---AIDLLDTLKAHEDGCVGMAANMIGVNK 53

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            ++ +++         +   NPKI+  +  +   +EGCLS+   R  V R   I V Y D
Sbjct: 54  AIIAVNMGFMN-----VAMFNPKIVKRNGKYET-EEGCLSLDGVRKCV-RYQEIKVEYED 106

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146
            N + Q     G  A  +QHE DHLNGI+ 
Sbjct: 107 INFKRQRQKYSGWTAQIIQHECDHLNGIII 136


>gi|313901227|ref|ZP_07834715.1| peptide deformylase [Clostridium sp. HGF2]
 gi|312954185|gb|EFR35865.1| peptide deformylase [Clostridium sp. HGF2]
          Length = 184

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 18/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V   D I+R  S P+   + ++   L+ +ML  + S+              +G+AA+Q
Sbjct: 7   DIVKDTDAIVRTKSEPVTLPLGAEDEALLQDMLTYVRSSQDAEIAEKENLRPAVGIAAIQ 66

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPD-YRADVKRSA 108
           +GV  R++ + + +          +NP+I++ S    +    EGCLS+ + +   V R+A
Sbjct: 67  LGVPKRMLAVVVPNEEGIDE-YALVNPRIVSESVQRAYLKNGEGCLSVENEHEGIVPRAA 125

Query: 109 FITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ITVR  D    Q   I A   LA  LQHE+DH +G LF D +++
Sbjct: 126 RITVRGYDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170


>gi|315037295|ref|YP_004030863.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
 gi|325955774|ref|YP_004286384.1| peptide deformylase [Lactobacillus acidophilus 30SC]
 gi|312275428|gb|ADQ58068.1| peptide deformylase [Lactobacillus amylovorus GRL 1112]
 gi|325332339|gb|ADZ06247.1| peptide deformylase [Lactobacillus acidophilus 30SC]
 gi|327182600|gb|AEA31047.1| peptide deformylase [Lactobacillus amylovorus GRL 1118]
          Length = 137

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           M  + + I     L + S      N   + + +++ + + +     +GLAA  IG   R+
Sbjct: 1   MTAQNI-IHDQLFLSQKS---TSANRADLKVAEDLRDTLLANRDKAVGLAANMIGKNKRI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +   +        P+V +NP+I   S ++   +EGCLS+   R   KR   ITV Y D N
Sbjct: 57  IAFYVGLL-----PLVMLNPQITKKSGEYLT-EEGCLSLSGER-KTKRYRTITVTYQDMN 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              +       +A  +QHE+DH  GIL 
Sbjct: 110 LNTKTQEFTDFIAEVIQHEVDHCEGILI 137


>gi|300768769|ref|ZP_07078665.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300493726|gb|EFK28898.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 141

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59
           + +P+V  P  +    S P +        ++ ++L+ + +   + +G+AA  IGV  +++
Sbjct: 6   MIRPIVHDPAAL----SVPADLATPADTQVLTDLLDTLAAHTDNCVGMAANMIGVNKQII 61

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+ L   A     +  INPKII     +   +EGCLS+P  R    R   ITV+Y D + 
Sbjct: 62  VVQLGPFA-----IAMINPKIIDHHGTYET-KEGCLSLPGER-PTSRYHQITVKYKDQHF 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q    +   A  +QHELDH  G L 
Sbjct: 115 KPQQQRFNDFTAQIIQHELDHCAGKLI 141


>gi|257790516|ref|YP_003181122.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
 gi|257474413|gb|ACV54733.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
          Length = 136

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + +P++   +  +L+R S P  + +  I   + + LE    +  +G+AA  IG L R++V
Sbjct: 1   MIRPIMR--NELVLQRASAPATEADLPIAQDLLDTLEAHRHS-CVGMAANMIGELKRIIV 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D          +  +NP+II+ +  +   +EGCLS+   R+   R   I V Y D   +
Sbjct: 58  FDDGGSH-----VAMLNPEIISCAGTYEA-EEGCLSLSGTRSA-TRYRTIKVSYQDLAMK 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            ++    G  A  +QHE+DH NG+L 
Sbjct: 111 PRVKTFTGFTAQIIQHEIDHCNGVLI 136


>gi|15901392|ref|NP_345996.1| peptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|15903451|ref|NP_359001.1| peptide deformylase [Streptococcus pneumoniae R6]
 gi|111658457|ref|ZP_01409130.1| hypothetical protein SpneT_02000357 [Streptococcus pneumoniae
           TIGR4]
 gi|116515494|ref|YP_816841.1| peptide deformylase [Streptococcus pneumoniae D39]
 gi|148984899|ref|ZP_01818152.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|148997383|ref|ZP_01824988.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|168491557|ref|ZP_02715700.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|168575253|ref|ZP_02721216.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|169834412|ref|YP_001694956.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|194396850|ref|YP_002038183.1| peptide deformylase [Streptococcus pneumoniae G54]
 gi|221232262|ref|YP_002511415.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225854993|ref|YP_002736505.1| peptide deformylase [Streptococcus pneumoniae JJA]
 gi|225857177|ref|YP_002738688.1| peptide deformylase [Streptococcus pneumoniae P1031]
 gi|225861384|ref|YP_002742893.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230075|ref|ZP_06963756.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255200|ref|ZP_06978786.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503289|ref|YP_003725229.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|307068194|ref|YP_003877160.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|14973038|gb|AAK75636.1| polypeptide deformylase [Streptococcus pneumoniae TIGR4]
 gi|15459060|gb|AAL00212.1| Formylmethionine deformylase [Streptococcus pneumoniae R6]
 gi|15858844|gb|AAK13237.1| peptide deformylase-like protein [Streptococcus pneumoniae]
 gi|116076070|gb|ABJ53790.1| polypeptide deformylase [Streptococcus pneumoniae D39]
 gi|147756438|gb|EDK63479.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70]
 gi|147922921|gb|EDK74037.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71]
 gi|168996914|gb|ACA37526.1| polypeptide deformylase [Streptococcus pneumoniae Hungary19A-6]
 gi|183574125|gb|EDT94653.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04]
 gi|183578738|gb|EDT99266.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016]
 gi|194356517|gb|ACF54965.1| peptide deformylase [Streptococcus pneumoniae G54]
 gi|220674723|emb|CAR69296.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669]
 gi|225723305|gb|ACO19158.1| polypeptide deformylase [Streptococcus pneumoniae JJA]
 gi|225725217|gb|ACO21069.1| polypeptide deformylase [Streptococcus pneumoniae P1031]
 gi|225728377|gb|ACO24228.1| polypeptide deformylase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238884|gb|ADI70015.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A]
 gi|301800382|emb|CBW33013.1| peptide deformylase [Streptococcus pneumoniae OXC141]
 gi|306409731|gb|ADM85158.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200]
 gi|327389740|gb|EGE88085.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA04375]
 gi|332199596|gb|EGJ13671.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332200116|gb|EGJ14189.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332200992|gb|EGJ15063.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 136

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++F   +   +EGCLS+   R+  KR   I + Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRLAYRDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|76787753|ref|YP_329975.1| peptide deformylase [Streptococcus agalactiae A909]
 gi|76799363|ref|ZP_00781521.1| polypeptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77414517|ref|ZP_00790664.1| polypeptide deformylase [Streptococcus agalactiae 515]
 gi|76562810|gb|ABA45394.1| polypeptide deformylase [Streptococcus agalactiae A909]
 gi|76585283|gb|EAO61883.1| polypeptide deformylase [Streptococcus agalactiae 18RS21]
 gi|77159440|gb|EAO70604.1| polypeptide deformylase [Streptococcus agalactiae 515]
          Length = 136

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + KP+V   D   L++ S+   + +   ++L  ++ + +++     +G+AA  IG L R+
Sbjct: 1   MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSLKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++I++         +V  NP ++  SD +   +E CLS+   R+  +R   IT+ Y D N
Sbjct: 56  IIINVGITN-----LVMFNPVLVAKSDPYET-EESCLSLVGCRS-TQRYHHITISYRDIN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q I      A   QHELDHL GIL 
Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136


>gi|307329049|ref|ZP_07608216.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
 gi|306885244|gb|EFN16263.1| transcriptional regulator, XRE family [Streptomyces violaceusniger
           Tu 4113]
          Length = 500

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 15/158 (9%)

Query: 4   KPL--VIFPDPILRRVSRPIEKINS--DIMNLIDNML------EVMY-STDGIGLAAVQI 52
           + +  V   DPIL + +RP    +   D   ++  ++        ++    G+G+AA QI
Sbjct: 323 RDIGMVQEGDPILTKTARPFALPDEAEDARRVVAELISAAERAATVHVFGKGMGVAAPQI 382

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           G+     ++   +       +  +NP+I+  S +     EGCLS  D R  V R   I+V
Sbjct: 383 GIDRAAAIVRTPE----GETLTLLNPRIVEESPEADEQYEGCLSFFDVRGKVPRPLAISV 438

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + D + Q +I   +  +A  + HE+DHL+G+L+   +
Sbjct: 439 EHQDIDGQQRITIFERGMARLVAHEVDHLHGLLYRARM 476


>gi|259503598|ref|ZP_05746500.1| peptide deformylase [Lactobacillus antri DSM 16041]
 gi|259168422|gb|EEW52917.1| peptide deformylase [Lactobacillus antri DSM 16041]
          Length = 136

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +L +VS+   + +  I     ++ + + +     +G+AA  IGV  R+++  L       
Sbjct: 11  LLSQVSQLASRADLPIAQ---DLKDTLAANGDHCVGMAANMIGVPKRVIIASLGPF---- 63

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
            P+V  NP II  S  +   QEGCLS+   R+   R   ITVR+ +     Q +  D   
Sbjct: 64  -PVVMFNPVIIAKSGPYQT-QEGCLSLAGQRS-TTRFQKITVRFTNEQWTQQELSLDAFP 120

Query: 131 ATCLQHELDHLNGILF 146
           A  +QHE+DH NGIL 
Sbjct: 121 AEIVQHEIDHCNGILI 136


>gi|315613522|ref|ZP_07888429.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
 gi|315314213|gb|EFU62258.1| peptide deformylase [Streptococcus sanguinis ATCC 49296]
          Length = 136

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++ +L        
Sbjct: 12  LSQVSKPASQED---IYLARDLQDTLLANRETCVGLAANMIGVQKRVIIFNLG-----LV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           PMV  NP +++    +   +EGCLS+   R    R   ITV Y D   Q   I   G  A
Sbjct: 64  PMVMFNPILLSNKGPYET-EEGCLSLTGVR-PTTRYETITVSYRDSKWQELTITLTGFPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL G + 
Sbjct: 122 QICQHELDHLEGRII 136


>gi|253579091|ref|ZP_04856362.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850034|gb|EES77993.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA]
          Length = 136

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            + +         + S+P  K +   + +  ++ + + +     +G+AA  IGV   +++
Sbjct: 6   VRDIFFLG-----QPSKPATKAD---IQIGKDLQDTLQANREWCVGMAANMIGVRKNIII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +++         +V  NP I++  D +   +EGCLS+   R    R   I V Y D N +
Sbjct: 58  VNMGFID-----VVMFNPVIVSKHDMYET-EEGCLSLDGVR-KTTRYQEIEVEYYDFNWK 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q     G  A   QHE+DHL+G + 
Sbjct: 111 KQRQKLSGWTAQICQHEIDHLSGKII 136


>gi|307704401|ref|ZP_07641314.1| polypeptide deformylase family protein [Streptococcus mitis SK597]
 gi|307622045|gb|EFO01069.1| polypeptide deformylase family protein [Streptococcus mitis SK597]
          Length = 136

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS+   + +   ++L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSQSASQED---LHLARDLQDTLLANRETCVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++F   +   +EGCLS+   R   KR   I V Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLSFEGPYET-EEGCLSLVGVR-PTKRYETIRVAYRDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|144574929|gb|AAZ43441.2| putative polypeptide deformylase [Mycoplasma synoviae 53]
          Length = 189

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 19/165 (11%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVLY 56
           +V  PD ILR  S+ +E  ++ + + L + M+  +  +         G+G+AA+Q G+  
Sbjct: 12  IVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQK 71

Query: 57  RLVVIDLQDHAH-RKNPMVFINPKIITFSDDFSV---YQEGCLSIPD----YRADVKRSA 108
            +  + L  + +      V  NP I+TF         + EGCLS+PD        V RS 
Sbjct: 72  NVFYVKLTQNDNSVVFDDVLFNP-IVTFKGKILTALAHGEGCLSVPDEIPNQEGLVSRSY 130

Query: 109 FITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I V+ Y     +H   +  G LA   QHELDHLNG LFID +++
Sbjct: 131 EIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 175


>gi|71894044|ref|YP_278152.1| putative polypeptide deformylase [Mycoplasma synoviae 53]
          Length = 186

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 19/165 (11%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVLY 56
           +V  PD ILR  S+ +E  ++ + + L + M+  +  +         G+G+AA+Q G+  
Sbjct: 9   IVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQK 68

Query: 57  RLVVIDLQDHAH-RKNPMVFINPKIITFSDDFSV---YQEGCLSIPD----YRADVKRSA 108
            +  + L  + +      V  NP I+TF         + EGCLS+PD        V RS 
Sbjct: 69  NVFYVKLTQNDNSVVFDDVLFNP-IVTFKGKILTALAHGEGCLSVPDEIPNQEGLVSRSY 127

Query: 109 FITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            I V+ Y     +H   +  G LA   QHELDHLNG LFID +++
Sbjct: 128 EIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 172


>gi|327473594|gb|EGF19014.1| peptide deformylase [Streptococcus sanguinis SK408]
          Length = 136

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANQENCIGLAANMIGVRKRVIIF-----LYGLVPIVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +EGCLS+   R   +R   ITV Y+D N Q Q +   GL A   QH
Sbjct: 69  NPVLRSKSGPYQT-EEGCLSLVGSR-PTQRYQEITVDYLDKNWQQQTMTLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GI+ 
Sbjct: 127 ELDHLEGIII 136


>gi|319937459|ref|ZP_08011864.1| peptide deformylase [Coprobacillus sp. 29_1]
 gi|319807299|gb|EFW03908.1| peptide deformylase [Coprobacillus sp. 29_1]
          Length = 189

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 22/172 (12%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVM------------YSTDGIGLAAV 50
           K ++    P++R +S+P+E  I  +   L+ +M E +            +    +G+AAV
Sbjct: 5   KDIIDDHHPLIREISQPVEMPICQEDEQLLLDMHEFLVNSQDEEMSEKYHLRPAVGIAAV 64

Query: 51  QIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI-PDYRA 102
           Q+GVL R+  I     D   +  + +    +NPKI+++++   +    EGCLS+  D   
Sbjct: 65  QVGVLKRMCAIHVLSYDDDGNISKADDYALVNPKIVSYTEKGSYLKDGEGCLSVNDDVEG 124

Query: 103 DVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            V R A +TV+  D    ++  I A G L+ CLQHELDH +G LF D +++ 
Sbjct: 125 LVPRHAKVTVKGYDVLTHKNVTIVARGYLSICLQHELDHFDGKLFYDRINKE 176


>gi|110798606|ref|YP_695205.1| peptide deformylase [Clostridium perfringens ATCC 13124]
 gi|168217422|ref|ZP_02643047.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
 gi|110673253|gb|ABG82240.1| polypeptide deformylase [Clostridium perfringens ATCC 13124]
 gi|182380515|gb|EDT77994.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
          Length = 136

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + +P+V     +L   + S    K +   + +ID++++ + +     +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DVLFLGQKSELATKED---IGIIDDLVDTLRANLESCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + +       +  +NP I+     +   +E CLS+  +R    R   I V Y+D 
Sbjct: 55  ILVFSIGNII-----VPMVNPVILKKEKSYET-EESCLSLTGFR-KTTRYEIIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH +GI+ 
Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136


>gi|268320251|ref|YP_003293907.1| polypeptide deformylase [Lactobacillus johnsonii FI9785]
 gi|262398626|emb|CAX67640.1| polypeptide deformylase [Lactobacillus johnsonii FI9785]
          Length = 137

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57
           M  KP+V   D + L+  S P  K +   +    ++ + + +      GLAA  IGV  R
Sbjct: 1   MAVKPIVH--DELSLKFKSLPATKQD---LGAATDLKDTLLANKDRAAGLAANMIGVQKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ + +        P+V +NP I+  +D +  Y EGCLS+   R   +R   ITV+Y + 
Sbjct: 56  IIALFVGPL-----PIVMLNPIIVAQNDKYLAY-EGCLSLTGER-PTERYKNITVKYQNE 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +        A  +QHE+DH NGIL 
Sbjct: 109 NLETRQQSFSDFTAEVIQHEIDHCNGILI 137


>gi|331266006|ref|YP_004325636.1| polypeptide deformylase, putative [Streptococcus oralis Uo5]
 gi|326682678|emb|CBZ00295.1| polypeptide deformylase, putative [Streptococcus oralis Uo5]
          Length = 136

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++ +L        
Sbjct: 12  LSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRVIIFNLG-----LV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P+V  NP ++++   +   +EGCLS+   R    R   ITV Y D   Q Q I   G   
Sbjct: 64  PIVMFNPILLSYEGPYET-EEGCLSLTGVR-PTTRFETITVSYRDSKWQEQTITLTGFPV 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL G + 
Sbjct: 122 QICQHELDHLEGRII 136


>gi|77406283|ref|ZP_00783349.1| polypeptide deformylase [Streptococcus agalactiae H36B]
 gi|77175095|gb|EAO77898.1| polypeptide deformylase [Streptococcus agalactiae H36B]
          Length = 136

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59
           + KP+V      L++ S+   + +   ++L  ++ + +++     +G+AA  IG   R++
Sbjct: 1   MIKPIVR-DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSXKRVI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +I++         +V  NP ++  SD +   +E CLS+   R+  +R   IT+ Y D N 
Sbjct: 57  IINVGITN-----LVMXNPVLVAKSDPYET-EESCLSLVGCRS-TQRYHHITISYRDINW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q I      A   QHELDHL GIL 
Sbjct: 110 KEQQIKLTDFPAQICQHELDHLEGILI 136


>gi|153811559|ref|ZP_01964227.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174]
 gi|149832300|gb|EDM87385.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174]
          Length = 136

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P  K +   + +  ++ + + +     +G+AA  IGV   ++++++        
Sbjct: 12  LGQPSEPATKAD---IQVGKDLQDTLRANRERCVGMAANMIGVKKNIIIVNMGFID---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP I++  D +   +EGCLS+   R    R   I V Y D N + Q     G  A
Sbjct: 65  -VVMFNPVIVSKHDMYET-EEGCLSLDGVR-KTTRYQEIEVEYYDFNWKKQRQKLSGWTA 121

Query: 132 TCLQHELDHLNGILF 146
              QHE+DHL+G + 
Sbjct: 122 QICQHEIDHLSGKII 136


>gi|268608180|ref|ZP_06141907.1| peptide deformylase [Ruminococcus flavefaciens FD-1]
          Length = 137

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + + +V   DP +L R S P  K +   M+ + ++L+ + +     +G+AA  IGV   +
Sbjct: 1   MVREIVR--DPLVLGRKSEPAGKED---MHTVRDLLDTLAANSDRCVGMAANMIGVHKTI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V  +   A     +  INPKI   S D    +EGCLS+   R  V+R  FITV Y+D  
Sbjct: 56  LVAAVGGKA-----VAMINPKITDKSKDTYDTEEGCLSLDGVR-PVQRYKFITVEYLDHR 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +        A  +QHE+DH +G + 
Sbjct: 110 FKKKKQTFRDFEAQIIQHEIDHFSGRII 137


>gi|2507258|sp|P47352|DEF_MYCGE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
          Length = 216

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 21/173 (12%)

Query: 1   MVKKP---LVIFPDPIL-RRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DG 44
           M  +P    ++F D  L  + +  +   I+  I   I  M+  + ++            G
Sbjct: 24  MTFQPTKTWLVFDDNALINKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPG 83

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYR- 101
           IG+AA QIG   +L  I L D  +++   + INPKII  S++ +  +  EGCLS+     
Sbjct: 84  IGIAANQIGYWKQLFYIHLNDL-NKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHK 142

Query: 102 ADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V RS +IT++  D    +   I A GL   CLQHE DHL G  F   ++ L
Sbjct: 143 GYVIRSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 195


>gi|289178283|gb|ADC85529.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 188

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 7/147 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           +++ +V      L R S P +  +     +  ++ E +  +  + +G+AA  IG   R++
Sbjct: 47  MQRTIVT-DTSFLSRPSDPADPADPLDAAIAQDLKETLAAHREECVGMAANMIGEPKRVI 105

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               +         V  NP+I     ++    EGCLS+   R    R   I V Y     
Sbjct: 106 AFVDEGLGSAI--TVMFNPQITAADGEYDAC-EGCLSLHGER-HTPRFRRIEVDYTTRKG 161

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +        A  +QHE+DH NG+L 
Sbjct: 162 RARHATFTDWTAQIIQHEIDHCNGVLI 188


>gi|145596629|ref|YP_001160926.1| formylmethionine deformylase [Salinispora tropica CNB-440]
 gi|145305966|gb|ABP56548.1| formylmethionine deformylase [Salinispora tropica CNB-440]
          Length = 506

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNML-------EVMYSTDGIGLAAVQ 51
           M    ++     +LR+ +RP +    +      +D +        E+   + G+G+AA Q
Sbjct: 329 MRSLGILQHDADLLRQPTRPFDLPREEEVAQQAVDRLTAALVRLDELHPFSKGVGVAAPQ 388

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +G+     V+   D      P+V +NP+++  + D     EGCLS  D R  V R   I 
Sbjct: 389 LGIGRAAAVVRPPDRGGE--PVVLLNPRVVDAAPDSDEQYEGCLSFFDQRGLVPRPLRID 446

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           V +   +    I   +  +A  + HE+DHL G L++D ++ 
Sbjct: 447 VEHTHLDGSRVITSYEYAMARLVAHEIDHLEGRLYVDRMAP 487


>gi|260221950|emb|CBA31026.1| hypothetical protein Csp_C26490 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 397

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L  V++P+ +++  I  L  +MLE MY   GIGLAA QI V  R++V
Sbjct: 29  MALLPILCYPDTRLHTVAKPVSQVDDRIRTLTADMLETMYDAKGIGLAATQIDVHERVIV 88

Query: 61  IDLQDHAHRKNPMVFINPKIIT 82
           ID+ +   R  PMV INP+++ 
Sbjct: 89  IDVSE--DRDQPMVLINPELVW 108


>gi|149007536|ref|ZP_01831171.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|149007898|ref|ZP_01831485.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|147760625|gb|EDK67599.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|147760895|gb|EDK67865.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74]
 gi|332074306|gb|EGI84783.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 136

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANHDTCVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++F   +   +EGCLS+   R+  KR     + Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETTRLAYRDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|1361510|pir||G64211 formylmethionine deformylase homolog - Mycoplasma genitalium
          Length = 226

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 21/173 (12%)

Query: 1   MVKKP---LVIFPDPIL-RRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DG 44
           M  +P    ++F D  L  + +  +   I+  I   I  M+  + ++            G
Sbjct: 34  MTFQPTKTWLVFDDNALINKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPG 93

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYR- 101
           IG+AA QIG   +L  I L D  +++   + INPKII  S++ +  +  EGCLS+     
Sbjct: 94  IGIAANQIGYWKQLFYIHLNDL-NKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHK 152

Query: 102 ADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V RS +IT++  D    +   I A GL   CLQHE DHL G  F   ++ L
Sbjct: 153 GYVIRSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 205


>gi|108885085|ref|NP_072768.2| peptide deformylase [Mycoplasma genitalium G37]
 gi|255660128|ref|ZP_05405537.1| peptide deformylase [Mycoplasma genitalium G37]
 gi|84626150|gb|AAC71324.2| peptide deformylase [Mycoplasma genitalium G37]
 gi|166078861|gb|ABY79479.1| peptide deformylase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 193

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 21/173 (12%)

Query: 1   MVKKP---LVIFPDPIL-RRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DG 44
           M  +P    ++F D  L  + +  +   I+  I   I  M+  + ++            G
Sbjct: 1   MTFQPTKTWLVFDDNALINKPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPG 60

Query: 45  IGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYR- 101
           IG+AA QIG   +L  I L D  +++   + INPKII  S++ +  +  EGCLS+     
Sbjct: 61  IGIAANQIGYWKQLFYIHLNDL-NKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHK 119

Query: 102 ADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V RS +IT++  D    +   I A GL   CLQHE DHL G  F   ++ L
Sbjct: 120 GYVIRSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 172


>gi|300811934|ref|ZP_07092395.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313122848|ref|YP_004033107.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|300497131|gb|EFK32192.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279411|gb|ADQ60130.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 143

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 19/154 (12%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQI 52
           M  + ++   DP+   +S+P  K  ++      ++L+ + +            GLAA  I
Sbjct: 1   MTVQKIIH--DPL--NLSQPAAKAAANDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMI 56

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           GV   ++ ++         P+V +NPKI+  S  +   +EGCLS+P  R    R   ITV
Sbjct: 57  GVNKAIIAVNAGFL-----PIVMLNPKIVKRSGHYLA-EEGCLSLPGER-PADRYEEITV 109

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           +Y D + +       G +A  +QHE+DH  G L 
Sbjct: 110 KYQDMDLKEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|331083476|ref|ZP_08332588.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404169|gb|EGG83717.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 136

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 19/150 (12%)

Query: 2   VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLY 56
           + KP+   + F    L + S P  K +  +     ++++ + +     +G+AA  IGV  
Sbjct: 1   MVKPIMKDIFF----LGQKSEPATKADLQVGK---DLMDTLAANREGCVGMAANMIGVKK 53

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            ++++++         +V  NP ++     +   +EGCLS+   R    R   I V Y+D
Sbjct: 54  SVIIVNMGFVD-----VVMFNPVLVRKESPYET-EEGCLSLTGVR-KTTRYQMIEVEYLD 106

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146
            N + Q +  DG  A   QHELDHL GIL 
Sbjct: 107 MNWKKQKLKLDGWTAQICQHELDHLEGILI 136


>gi|295106021|emb|CBL03564.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 136

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 35  MLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQE 92
           +L+ +  ++ + +G+AA  IG   R++V D         P V  NP+I+  S  +   +E
Sbjct: 30  LLDTLAAHAHECVGMAANMIGTAKRIIVFD-----DEGTPRVMFNPEIVGRSGTYEA-EE 83

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           GCLS+P  R    R   I VR+ D   Q +     G  A  +QHE+DH +GIL 
Sbjct: 84  GCLSLPGSR-RTTRYRTIKVRFEDRGFQPREQTFTGFTAQIIQHEIDHCDGILI 136


>gi|168204531|ref|ZP_02630536.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
 gi|170663898|gb|EDT16581.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
          Length = 136

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + +P+V     IL   + S    K +   + +ID++++ + +     +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DILFLGQKSELATKED---IGIIDDLVDTLRANLESCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + +       +  +NP I+     +   +E CLS+  +R    R   I V Y+D 
Sbjct: 55  ILVFSIGNII-----VPMVNPVILKKEKSYET-EESCLSLTGFR-KTTRYEIIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH +GI+ 
Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136


>gi|150018336|ref|YP_001310590.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052]
 gi|6014951|sp|O08450|DEF_CLOB8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2208948|emb|CAB09662.1| formylmethionine deformylase [Clostridium beijerinckii]
 gi|149904801|gb|ABR35634.1| formylmethionine deformylase [Clostridium beijerinckii NCIMB 8052]
          Length = 136

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + KP+V     IL   + S    K +   M +ID++++ + +     +GLAA  IGV  R
Sbjct: 1   MIKPIVK---DILFLGQKSEEATKND---MVVIDDLIDTLRANLEHCVGLAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + +       +  INP I+     +   +E CLS+  +R   KR   I V Y+D 
Sbjct: 55  ILVFTVGNLI-----VPMINPVILKKEKPYET-EESCLSLIGFR-KTKRYETIEVTYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N   +    +G  A  +QHE+DH  GI+ 
Sbjct: 108 NFNKKKQVFNGFTAQIIQHEMDHFEGIII 136


>gi|148544448|ref|YP_001271818.1| peptide deformylase [Lactobacillus reuteri DSM 20016]
 gi|184153812|ref|YP_001842153.1| peptide deformylase [Lactobacillus reuteri JCM 1112]
 gi|227363124|ref|ZP_03847259.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|325682770|ref|ZP_08162286.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
 gi|148531482|gb|ABQ83481.1| formylmethionine deformylase [Lactobacillus reuteri DSM 20016]
 gi|183225156|dbj|BAG25673.1| polypeptide deformylase [Lactobacillus reuteri JCM 1112]
 gi|227071842|gb|EEI10130.1| peptide deformylase [Lactobacillus reuteri MM2-3]
 gi|324977120|gb|EGC14071.1| peptide deformylase [Lactobacillus reuteri MM4-1A]
          Length = 136

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + KP++     +L + + P  K +     L  ++ + +  +  + +G+AA  IGV    +
Sbjct: 1   MIKPIIK-DQQLLAKKATPTTKADLP---LATDLSDTLNAHQAECVGMAANMIGVNKNAI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +  +         +V  NP+I+  S  +    EGCLS+   R   KR   ITV++ + + 
Sbjct: 57  IARIGPFN-----VVMFNPQIVAKSHPYQTT-EGCLSLSGTR-PTKRYKQITVKFRNQSW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q Q +      A  +QHE+DH NGI+ 
Sbjct: 110 QVQTLELADFAAEIIQHEIDHCNGIII 136


>gi|194466630|ref|ZP_03072617.1| formylmethionine deformylase [Lactobacillus reuteri 100-23]
 gi|194453666|gb|EDX42563.1| formylmethionine deformylase [Lactobacillus reuteri 100-23]
          Length = 136

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + KP++     +L + + P  K +     L +++++ +  +  + +G+AA  IGV    +
Sbjct: 1   MIKPIIK-DHQLLGKKAIPTTKADLP---LANDLIDTLNVHQAECVGMAANMIGVNKNAI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +  +         +V  NP+II  S  +    EGCLS+   R   KR   ITV + + + 
Sbjct: 57  IARIGPFN-----VVMFNPQIIAKSHPYQTA-EGCLSLSGTR-PTKRYKQITVNFRNQSW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q Q +      A  +QHE+DH NGI+ 
Sbjct: 110 QMQTLELTDFAAEIVQHEIDHCNGIII 136


>gi|309776085|ref|ZP_07671076.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916036|gb|EFP61785.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 137

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 16/149 (10%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNL--IDNMLEVM--YSTDGIGLAAVQIGVLYR 57
           + + +V   DP L          ++ + +L  + ++L+ +  ++   +G+AA  IGVL R
Sbjct: 1   MIRDIVK--DPFLLS----CRSEDATLRDLQTMQDLLDTLQAHADHCVGMAANMIGVLKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++          N ++ +NP II   +     +EGCL   D +  V R   I V ++D 
Sbjct: 55  IIIFQ-----DGGNYVIMLNPVIIKTGNKRYTTEEGCLC-HDTKKKVTRYEKIKVFFIDA 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +I   +G  A  +QHELDH +GIL 
Sbjct: 109 NGRKKIKTYEGFCAQIIQHELDHCDGILI 137


>gi|331083358|ref|ZP_08332471.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404439|gb|EGG83984.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 136

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S    K +   + +  ++++ + +     +G+AA  IGV  R++++++        
Sbjct: 12  LGQKSELATKAD---LQIGRDLMDTLAANREGCVGMAANMIGVKKRVIIVNMGFVD---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP ++     +   +EGCLS+P  R    R   I V Y+D N + Q +  DG +A
Sbjct: 65  -VVMFNPVLVKKELPYET-EEGCLSLPGVR-KTTRYQTIEVEYLDMNWKKQNLKLDGWIA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GIL 
Sbjct: 122 QICQHELDHLEGILI 136


>gi|148988601|ref|ZP_01820034.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|148990374|ref|ZP_01821546.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|149021827|ref|ZP_01835834.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|168493454|ref|ZP_02717597.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06]
 gi|147924329|gb|EDK75421.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|147925802|gb|EDK76877.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73]
 gi|147930063|gb|EDK81050.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72]
 gi|183576408|gb|EDT96936.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06]
          Length = 136

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++F   +   +EGCLS+   R+  KR     + Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETTRLAYRDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|18309742|ref|NP_561676.1| peptide deformylase [Clostridium perfringens str. 13]
 gi|168214353|ref|ZP_02639978.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
 gi|169344411|ref|ZP_02865380.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|18144420|dbj|BAB80466.1| polypeptide deformylase [Clostridium perfringens str. 13]
 gi|169297331|gb|EDS79440.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
 gi|170714200|gb|EDT26382.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
          Length = 136

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + +P+V     +L   + S    K +   + +ID++++ + +     +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DVLFLGQKSELATKED---IGIIDDLVDTLRANLESCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + +       +  +NP I+     +   +E CLS+  +R    R   I V Y+D 
Sbjct: 55  ILVFSIGNII-----VPMVNPVILKKEKSYET-EESCLSLTGFR-KTTRYEIIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH  GI+ 
Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFEGIII 136


>gi|224541764|ref|ZP_03682303.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525368|gb|EEF94473.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM
           15897]
          Length = 186

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 22/165 (13%)

Query: 11  DPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYR 57
           +P++R  S+ +   ++ +  + +  M + +  +             G+G+AA+QIG+  R
Sbjct: 9   NPLIREKSKEVTLPLSDEDRHTLMEMYQYLVDSQDEEKAEKYDLRPGVGIAAIQIGIPKR 68

Query: 58  LVVIDLQDHAHRKNPM-----VFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSAF 109
           +  I +       N +       +NP+I+  +    +    EGCLS+P D    V RSA 
Sbjct: 69  MCAIYIPAVDEEGNIVKCDQWALVNPRIVASTVKVAYLKNGEGCLSVPEDQPGIVPRSAK 128

Query: 110 ITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +TV+  D    Q   I A G  A CLQHELDH  GIL+ DH ++ 
Sbjct: 129 VTVKGYDALTDQEVTIVARGFTAICLQHELDHFEGILYYDHFNKE 173


>gi|182684506|ref|YP_001836253.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|307127760|ref|YP_003879791.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B]
 gi|182629840|gb|ACB90788.1| peptide deformylase [Streptococcus pneumoniae CGSP14]
 gi|306484822|gb|ADM91691.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B]
          Length = 136

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS P  + +   + L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSHPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++F   +   +EGCLS+   R+  KR   I + Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRLAYRDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|330470685|ref|YP_004408428.1| XRE family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328813656|gb|AEB47828.1| XRE family transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 504

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 11/156 (7%)

Query: 6   LVIFPDPILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           ++     +LR+ +RP +         ++   + + +  + E+     G+G+AA Q+ +  
Sbjct: 332 ILQRGADLLRQPARPFDLPREARAAREVIDRLTDALARLDELHPFAKGVGIAAPQLEIGR 391

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              VI   D      P+V +NP+++  + D     EGCLS  D+R  V R   + V +  
Sbjct: 392 AAAVIRPPD--RTAEPLVLLNPRVVDAAPDTDEQYEGCLSFFDHRGLVPRPLRLDVEHAQ 449

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            + +  I   +  +A  + HE+DHL G L++D ++ 
Sbjct: 450 LDGRRVITSFEFGMARLVAHEIDHLEGRLYVDRMAP 485


>gi|160913556|ref|ZP_02076247.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991]
 gi|158434108|gb|EDP12397.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991]
          Length = 185

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 17/165 (10%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K ++   D ++R+ S  +E  +N++   L+ +ML+ +  +              +G+AA+
Sbjct: 6   KDIIQDSDTVIRKKSVNVELPLNAEDKQLLMDMLQYVRDSQDNELAEQNGLRPAVGIAAI 65

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI-PDYRADVKRS 107
           Q+G+  +++ + + D           N +I++ S    +    EGCLS+  +++  V R 
Sbjct: 66  QLGIPKKMLAVVVPDEEGNSQEFALANARIVSESVQLSYLKNGEGCLSVEKEHQGLVPRH 125

Query: 108 AFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           A ITV+  D    +   I A   LA  LQHE+DH +G LF D ++
Sbjct: 126 ARITVKAYDLLQNKEITIKASDYLAIVLQHEIDHFSGTLFYDRIN 170


>gi|327488979|gb|EGF20775.1| peptide deformylase [Streptococcus sanguinis SK1058]
          Length = 136

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +E CLS+   R   +R   IT+ Y+D + Q Q I   GL A   QH
Sbjct: 69  NPVLRSKSGPYQT-EESCLSLVGSR-PTQRYQEITIDYLDKHWQQQTITLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GI+ 
Sbjct: 127 ELDHLEGIII 136


>gi|325124924|gb|ADY84254.1| Polypeptide deformylase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 143

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 21/155 (13%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51
           M  + ++   DP+ L + +      +        ++L+ + +            GLAA  
Sbjct: 1   MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IGV   ++ ++         P+V +NPKI+  S  +   +EGCLS+P  R    R   IT
Sbjct: 56  IGVNKAIIAVNAGFL-----PIVMLNPKIVKRSGHYLA-EEGCLSLPGER-PADRYEEIT 108

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           V+Y D + +       G +A  +QHE+DH  G L 
Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|323341211|ref|ZP_08081458.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
 gi|323091405|gb|EFZ34030.1| peptide deformylase [Lactobacillus ruminis ATCC 25644]
          Length = 136

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 15/148 (10%)

Query: 2   VKKPLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58
           + KP+       IL + S    K +   +    ++++ +  +    +G+AA  IG+  R+
Sbjct: 1   MIKPINKDVG--ILSKKSTTASKKD---LQTASDLIDTLKAHQNSCVGMAANMIGINKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +            P++ INP+I      ++  +EGCLS+   R   KR   I V Y+D N
Sbjct: 56  IACFFGPF-----PVLMINPEITRKFGPYTA-EEGCLSLEGKRVA-KRFKHIEVTYLDEN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              Q    D   A  +QHE+DH NGIL 
Sbjct: 109 FAKQRQKLDDFNAQIVQHEIDHCNGILI 136


>gi|157150232|ref|YP_001451024.1| peptide deformylase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075026|gb|ABV09709.1| formylmethionine deformylase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 136

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L++ S    K +   + L  ++ + + +   + +GLAA  IG   R+++       +   
Sbjct: 12  LQQKSEVAVKSD---LYLAQDLQDTLLANQENCVGLAANMIGDKKRVIIF-----MYGMV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P++  NP +   S  +   +EGCLS+   R+   R   ITV Y+D N Q Q I      A
Sbjct: 64  PIIMFNPILRAKSGPYQT-EEGCLSLVGSRS-TTRYQEITVDYLDRNWQPQTITLKDFPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GIL 
Sbjct: 122 QICQHELDHLEGILI 136


>gi|330798798|ref|XP_003287437.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum]
 gi|325082584|gb|EGC36062.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum]
          Length = 238

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 51/199 (25%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNL---IDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           ++   + +L++ +     K  SD+  L   ID M + M +  G G+AA QIG+  +L + 
Sbjct: 10  ILKVGNTVLKQKALAWTAKEMSDVKYLESVIDRMTKEMGNV-GTGIAAPQIGINKQLFLF 68

Query: 62  DLQDHAHRKN-----PMVFINPKIITFSDD------------------------------ 86
           +        +        F NPK+    +D                              
Sbjct: 69  EFDSQGLPVHCPNFPLTAFFNPKVEIIEEDVYMPPPGFSITTNKKILNLKRYKKSLQTFE 128

Query: 87  -----------FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
                           E CLS+P+  A +KR+    + ++D   + ++I A+G++A C Q
Sbjct: 129 RSVPLKQTSNNTMEMYESCLSVPNIFAKIKRAKRCIITFLDITGKERVIDAEGIIAACFQ 188

Query: 136 HELDHLNGILFIDHLSRLK 154
           HE DHL G L +D L   K
Sbjct: 189 HEYDHLLGRLLVDRLDPKK 207


>gi|225026504|ref|ZP_03715696.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353]
 gi|224956192|gb|EEG37401.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353]
          Length = 136

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L++ + P  K +   M ++ ++L+ + + +   +G+AA  IGV  R++ +++        
Sbjct: 12  LKKKAVPATKDD---MPVVQDLLDTLKANETGCVGMAANMIGVNKRIIAVNMGFAN---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  +NP I++  + +   +EGCLS+   R    R   I V Y D + + Q     G +A
Sbjct: 65  -IAMLNPVIVSKKEPYEA-EEGCLSLKGVR-KTTRYQEIEVEYEDIHFKKQHQKYKGWVA 121

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH  GI+ 
Sbjct: 122 QIIQHEVDHCEGIII 136


>gi|308802341|ref|XP_003078484.1| peptide deformylase (ISS) [Ostreococcus tauri]
 gi|116056936|emb|CAL53225.1| peptide deformylase (ISS) [Ostreococcus tauri]
          Length = 175

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 59/100 (59%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +  +P P LR  + PIE  ++++  L   M ++MY T G GLAA Q+GV YR++V +   
Sbjct: 71  IAKYPAPCLRAKNAPIETFDANLEQLSKAMFKIMYETVGCGLAAPQVGVNYRMMVYNEAG 130

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105
              +   +V  NPKI+ +S +   ++EGCLS P   ADV+
Sbjct: 131 EPGKGREVVLCNPKIVKYSKEKDFFEEGCLSFPKMYADVE 170


>gi|15858848|gb|AAK13239.1| peptide deformylase-like protein DefA [Streptococcus pneumoniae]
          Length = 136

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANIIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++F   +   +EGCLS+   R+  KR   I + Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRLAYRDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|325685192|gb|EGD27314.1| formylmethionine deformylase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 143

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 21/155 (13%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51
           M  + ++   DP+ L + +      +        ++L+ + +            GLAA  
Sbjct: 1   MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IGV   ++ ++         P+V +NPKI+  S  +   +EGCLS+P  R    R   IT
Sbjct: 56  IGVNKAIIAVNAGFL-----PIVMLNPKIVKGSGHYLA-EEGCLSLPGER-PADRYEEIT 108

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           V+Y D + +       G +A  +QHE+DH  G L 
Sbjct: 109 VKYQDMDLKEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|328770364|gb|EGF80406.1| hypothetical protein BATDEDRAFT_88570 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 198

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 29/181 (16%)

Query: 1   MVKKPLVI------------FPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYS--TD 43
           M  + ++                P LR  +  +   +      + ++ +M  V  S    
Sbjct: 1   MPVRTIIRKIMKGGSPEVLKAGHPFLRTKAEAVSLNDINTPAFLKIVKSMNAVFDSPLHS 60

Query: 44  GIGLAAVQIGVLYRLVVIDLQDH--------AHRKNPMVFINPKIITF----SDDFSVYQ 91
            +GLAA QI    +L+   + D                  +NP +       S  +    
Sbjct: 61  VLGLAAAQISHPVQLIAYQITDTQLIKEKNLPGPVARTFIVNPVMTILDKLPSAKWKAEY 120

Query: 92  EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           E C SIP+Y   V+R+  + V     +     + A G+LA  +QHE+DH+ GILFID + 
Sbjct: 121 EFCESIPNYSGLVRRADHVHVTGFGLDGNSITVNAKGILARIIQHEMDHMEGILFIDKME 180

Query: 152 R 152
           R
Sbjct: 181 R 181


>gi|70726701|ref|YP_253615.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435]
 gi|68447425|dbj|BAE05009.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 162

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + LV    P+L + ++PI+  ++ + +L+ ++ + +Y+ +   L A QIG+  ++ +
Sbjct: 1   MAIQKLVQSTHPVLTKQAQPIKAYDATLKDLLLDLEDTLYAEEASALCAPQIGISKQVAI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +  +   NPKI + S+D  +  EG +++P    +V+RS  IT+   D    
Sbjct: 61  IDM----EVEGLLQLFNPKIKSESNDKIIDLEGSVNLPGIYGEVERSKMITIEANDLEGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
              + A   +A  + H +D +NGI F      L  D
Sbjct: 117 TIELTAYDDVARMILHIVDQMNGIPFTKRAQHLLTD 152


>gi|116513303|ref|YP_812209.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092618|gb|ABJ57771.1| N-formylmethionyl-tRNA deformylase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 143

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 21/155 (13%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51
           M  + ++   DP+ L + +      +        ++L+ + +            GLAA  
Sbjct: 1   MTVQKIIH--DPLSLSQPAAKAAVSD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IGV   ++ ++         P+V +NPKI+  S  +   +EGCLS+P  R    R   IT
Sbjct: 56  IGVNKAIIAVNAGFL-----PIVMLNPKIVKRSGHYLA-EEGCLSLPGER-PADRYEEIT 108

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           V+Y D + +       G +A  +QHE+DH  G L 
Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|319939828|ref|ZP_08014184.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
 gi|319811041|gb|EFW07356.1| peptide deformylase [Streptococcus anginosus 1_2_62CV]
          Length = 136

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + KP+V   D  +L++ ++P  K +  I     ++ + + +     +G+AA  IGV  R+
Sbjct: 1   MIKPIVK--DMLVLQQKAQPASKEDVGIGQ---DLFDTLRANQDKCVGMAANMIGVQKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +++      +   P++  NP +   S  +   +E CLS+   R    R   ITV Y+D +
Sbjct: 56  IIL-----MYDVIPVIMFNPILKRKSSPYRA-EESCLSLAGSR-LTTRYKEITVEYLDQH 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q +      A   QHELDHL GIL 
Sbjct: 109 WRKQTLTLKDFPAQICQHELDHLEGILI 136


>gi|224542289|ref|ZP_03682828.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524831|gb|EEF93936.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM
           15897]
          Length = 137

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59
           + K +V   +  L +V+    K +  I     ++ + + +   + +G+A   IG    ++
Sbjct: 1   MIKEIVK-DNFFLSQVAEKATKEDLYIGT---DLKDTLQAHLHECVGMAGNMIGYNKAVI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +    +  H     V  NP+II  S ++   +EGCLS    ++ VKR   I V Y D + 
Sbjct: 57  IFLEDEKMH-----VMYNPEIIKTSGNYHECEEGCLSHVGQKS-VKRYETIKVSYFDESF 110

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +I    G  A  +QHE DHL GIL 
Sbjct: 111 KKKIKTYTGFTAQIIQHECDHLKGILI 137


>gi|183602062|ref|ZP_02963431.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682971|ref|YP_002469354.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190548|ref|YP_002967942.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195954|ref|YP_002969509.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218947|gb|EDT89589.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620621|gb|ACL28778.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248940|gb|ACS45880.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250508|gb|ACS47447.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793535|gb|ADG33070.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9]
          Length = 142

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 7/147 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           +++ +V      L R S P +  +     +  ++ E +  +  + +G+AA  IG   R++
Sbjct: 1   MQRTIVT-DTSFLSRPSDPADPADPLDAAIAQDLKETLAAHREECVGMAANMIGEPKRVI 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               +         V  NP+I     ++    EGCLS+   R    R   I V Y     
Sbjct: 60  AFVDEGLGSAI--TVMFNPQITAADGEYDAC-EGCLSLHGER-HTPRFRRIEVDYTTRKG 115

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +        A  +QHE+DH NG+L 
Sbjct: 116 RARHATFTDWTAQIIQHEIDHCNGVLI 142


>gi|212716409|ref|ZP_03324537.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660662|gb|EEB21237.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM
           16992]
          Length = 141

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           P L + S        + + +  ++ + + +     +G+AA  IGV  R++    +D   R
Sbjct: 10  PFLSQPSAEALN-TPEDLAVAQDLKDTLDAHRNGCVGMAANMIGVSKRIIAFVDEDFGGR 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               V  NP I      +    EGCLS+   R  V R   I V Y D   + +     G 
Sbjct: 69  I--FVMFNPTITAKDGAYDTS-EGCLSLKGERRTV-RFQRIEVSYADRKFRERHATFTGF 124

Query: 130 LATCLQHELDHLNGILF 146
            A  +QHE+DH  GI+ 
Sbjct: 125 TAQIIQHEIDHCEGIII 141


>gi|332363811|gb|EGJ41590.1| peptide deformylase [Streptococcus sanguinis SK355]
 gi|332365740|gb|EGJ43498.1| peptide deformylase [Streptococcus sanguinis SK1059]
          Length = 136

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANQENCIGLAANMIGVRKRVIIF-----LYGLVPVVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +E CLS+   R   +R   IT+ Y+D + Q Q +   GL A   QH
Sbjct: 69  NPVLRSKSGPYQT-EESCLSLVGSR-PTQRYQEITIDYLDKHWQQQTMTLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GI+ 
Sbjct: 127 ELDHLEGIII 136


>gi|104773326|ref|YP_618306.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422407|emb|CAI96944.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 143

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 21/155 (13%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51
           M  + ++   DP+ L + +      +        ++L+ + +            GLAA  
Sbjct: 1   MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           IGV   ++ ++         P+V +NP I+  S  +   +EGCLS+P  R    R   IT
Sbjct: 56  IGVNKAIIAVNAGFL-----PIVMLNPTIVKRSGHYLA-EEGCLSLPGER-PADRYEEIT 108

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
           V+Y D + +       G +A  +QHE+DH  G L 
Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143


>gi|182419964|ref|ZP_02951200.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237665638|ref|ZP_04525626.1| polypeptide deformylase family protein [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376215|gb|EDT73800.1| polypeptide deformylase [Clostridium butyricum 5521]
 gi|237658585|gb|EEP56137.1| polypeptide deformylase family protein [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 137

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59
           + + +V   D  L + +    K +   + +ID+M++   +     +GLA+ QIG   R++
Sbjct: 1   MVREIVKDNDK-LTQKAVEATKKD---LYIIDDMIDTAKANRDICVGLASNQIGENVRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V  + D       +  +NPKIIT S      +E CLS         R + I V Y D N 
Sbjct: 57  VALMGDEF-----IPLVNPKIITHSVATYEDEEACLSHEG-TKKATRYSSIEVEYRDRNF 110

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G +A  +QHE+DH  GIL 
Sbjct: 111 KKRKNIFKGFVAQIIQHEMDHCEGILI 137


>gi|269114884|ref|YP_003302647.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis]
 gi|268322509|emb|CAX37244.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis
           ATCC 23114]
          Length = 185

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST--------DGIGLAAVQIGVLY 56
           LV  P+ +LR  S+ +E  + ++   LI  M+  +  +          +G+AAVQ G+L 
Sbjct: 9   LVQLPEKVLRNKSKNVELPLTAEDDLLIQKMIFHVDDSQTPQTKFRPAVGVAAVQYGILK 68

Query: 57  RLV-VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIP----DYRADVKRSAF 109
            +  V+   D  +       INP +++ S+     QEG  CLS+          V R + 
Sbjct: 69  NIFYVMVKDDQNNYIFRDALINPIMLSHSNHKISLQEGEGCLSVKESDAGQEGFVYRYSR 128

Query: 110 ITVR-YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           + ++ Y     + +I    G  A  LQHE DHL G LFID +++ +
Sbjct: 129 VVIKAYSYFEKKEKIYDVSGYPAIVLQHEYDHLQGKLFIDRINKNQ 174


>gi|125717323|ref|YP_001034456.1| peptide deformylase [Streptococcus sanguinis SK36]
 gi|125497240|gb|ABN43906.1| Formylmethionine deformylase, putative [Streptococcus sanguinis
           SK36]
          Length = 136

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L+++S    + +   + L  ++ + + +   + IGLAA  IGV  R+++       +   
Sbjct: 12  LQQLSERASRED---LYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P+V  NP +++ S  +   +EGCLS+   R   +R   ITV Y+D N Q Q +   GL A
Sbjct: 64  PVVMFNPVLLSKSGPYQT-EEGCLSLVGSR-PTQRYQEITVDYLDKNWQQQTMTLKGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GI+ 
Sbjct: 122 QICQHELDHLEGIII 136


>gi|257064918|ref|YP_003144590.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
 gi|256792571|gb|ACV23241.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
          Length = 136

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58
           + +P+V   + + LR  S P    +  +     ++++ +  +S + +G+AA  IGV  R+
Sbjct: 1   MIRPVVK--NELALRAPSSPATVADRSVGQ---DLMDTLRFHSHECVGMAANMIGVAKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V D           +  NP+I   S+ +   +EGCLS+   R    R   I V + D  
Sbjct: 56  IVFDDAGTHR-----LMYNPEITAKSEPYQT-EEGCLSLTGRR-PATRYRRIEVTFRDER 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              +    +G  A  +QHE+DH NGI+ 
Sbjct: 109 FASRTEAFEGWTAQIIQHEIDHCNGIVI 136


>gi|224065146|ref|XP_002190853.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 131

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 49  AVQIGVLYRLVVIDLQD-----------HAHRKNPM---VFINPKIITFSDDFSVYQEGC 94
           A Q+GV  R+   +               AHR  P    V +NP +           EGC
Sbjct: 1   APQLGVPLRVFAAEKPPARCARYPPALRQAHRIEPFPLRVLVNPALRILDSRLVTGPEGC 60

Query: 95  LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            SI  + A V R   + V  +D         A G  A  +QHE+DHL+GIL+ID +  
Sbjct: 61  ASIHGFSAYVPRHWAVHVSGVDELGVPVSWEASGWAARIIQHEMDHLDGILYIDRMEP 118


>gi|319938534|ref|ZP_08012927.1| peptide deformylase [Coprobacillus sp. 29_1]
 gi|319806298|gb|EFW02974.1| peptide deformylase [Coprobacillus sp. 29_1]
          Length = 137

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + +V     IL + S      +   M ++ ++ + +  +    +G+AA  IG   R++
Sbjct: 1   MIRDIVT-DQFILSQKSVEATLDD---MAIVQDLRDTLVAHEDHCVGMAANMIGYHKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++      +  + +V INP I+  S  +    EGCLS    +A VKR   I V Y D + 
Sbjct: 57  IV-----KNNNDHLVMINPIILKTSGRYYDTHEGCLSHIGEKA-VKRYEKIKVEYKDIHF 110

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +I   +G +A  +QHE+DH  GIL 
Sbjct: 111 KVKIKTFEGYVAQIIQHEIDHCQGILI 137


>gi|329668141|gb|AEB94089.1| polypeptide deformylase [Lactobacillus johnsonii DPC 6026]
          Length = 137

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57
           M  KP++   D + L+  S P  K +   +    ++ + + +      GLAA  IGV  R
Sbjct: 1   MAVKPIIH--DELSLKFKSLPATKQD---LGAATDLKDTLLANKDKAAGLAANMIGVQKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ + +        P+V +NP I+   D +  Y EGCLS+   R   +R   ITV+Y + 
Sbjct: 56  IIALFVGPL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGER-PTERYKNITVKYQNE 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +        A  +QHE+DH NGIL 
Sbjct: 109 NLETRQQSFSDFTAEVIQHEVDHCNGILI 137


>gi|325663348|ref|ZP_08151798.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470802|gb|EGC74032.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 136

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 19/150 (12%)

Query: 2   VKKPL---VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLY 56
           + KP+   + F    L + S P  K +  +     ++++ + +     +G+AA  IGV  
Sbjct: 1   MVKPIMKDIFF----LGQRSDPATKADLQVGR---DLMDTLAANREGCVGMAANMIGVKK 53

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R++++++         +V  NP ++     +   +EGCLS+   R    R   I V Y+D
Sbjct: 54  RVIIVNMGFVD-----VVMFNPVLVRKESPYET-EEGCLSLTGVR-KTTRYQTIEVEYLD 106

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146
            N + Q +  DG  A   QHELDHL GIL 
Sbjct: 107 MNWKKQNLKLDGWTAQICQHELDHLEGILI 136


>gi|313885254|ref|ZP_07819006.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619945|gb|EFR31382.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 136

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59
           + K +V   +  L + ++P  K +     +I ++ + + +     +G+AA  IG+   ++
Sbjct: 1   MIKEIVT-DNFFLSQKAKPATKED---QAVIQDLKDTLKAHRHHCVGMAANMIGINKAII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ +         +V +NP+I + +  +   QEGCLS    +   +R   I V+Y+D + 
Sbjct: 57  IVAMGPLD-----LVMVNPEITSQAKPYQT-QEGCLSHTGQK-PTQRYQEIQVQYLDEHF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             +     G LA  +QHE+DHL GIL 
Sbjct: 110 HPKNRRFQGPLAQVIQHEMDHLAGILI 136


>gi|325688025|gb|EGD30044.1| peptide deformylase [Streptococcus sanguinis SK72]
 gi|327469220|gb|EGF14692.1| peptide deformylase [Streptococcus sanguinis SK330]
          Length = 136

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP + + S  +   +E CLS+   R   +R   IT+ Y+D + Q Q +   GL A   QH
Sbjct: 69  NPVLRSKSGPYQT-EESCLSLVGSR-PTQRYQEITIDYLDKHWQQQTMTLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GI+ 
Sbjct: 127 ELDHLEGIII 136


>gi|317488626|ref|ZP_07947169.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325831636|ref|ZP_08164853.1| peptide deformylase [Eggerthella sp. HGA1]
 gi|316912278|gb|EFV33844.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325486507|gb|EGC88956.1| peptide deformylase [Eggerthella sp. HGA1]
          Length = 136

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58
           + +P++   +  +L++ S    + +  I     ++L+ +  +    +G+AA  IG + R+
Sbjct: 1   MIRPIMR--NELVLQQPSTAATEADLPIAQ---DLLDTLAAHRHSCVGMAANMIGEVKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +  D     +    +  +NP+I++ +  +   +EGCLS+   R    R   I V Y D  
Sbjct: 56  IAFD-----NEGAYLAMLNPEIVSRAGAYET-EEGCLSLAGTR-PATRYRTIKVSYQDLA 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + ++    G  A  +QHE+DH NG+L 
Sbjct: 109 MKPRVKTFTGFTAQIIQHEIDHCNGVLI 136


>gi|169334954|ref|ZP_02862147.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257692|gb|EDS71658.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM
           17244]
          Length = 158

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 12/154 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLID-NMLEVMYSTD-----GIGLAAVQIGVL 55
           + K +++  +P L +VS+ +++    ++  I+ ++ + + +       G  +AA QIG+ 
Sbjct: 1   MIKEILLLGNPNLYKVSKEVKEEEIQLLKNIEIDLHDTLMNYRKVHGAGRAIAAPQIGIE 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R++ +++        P++ +NPK+     +     + C+S P+    V+R     + Y 
Sbjct: 61  KRILYMNID------KPILIVNPKLTFPDSEKIQVMDDCMSFPNLTVKVERYKNCILNYK 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           D N     +     L+  +QHE DHL+GIL    
Sbjct: 115 DRNFSDCKMILKDDLSELIQHEYDHLDGILATMR 148


>gi|152990073|ref|YP_001355795.1| hypothetical protein NIS_0324 [Nitratiruptor sp. SB155-2]
 gi|151421934|dbj|BAF69438.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 266

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 7/152 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M K  ++ +PD  L ++S  I    +  I  +++ + + +   +   LAA+QIG   R++
Sbjct: 1   MAK--ILTYPDHTLLQISGLIRDFKDPKINEIVEEIKKTIEENNLQALAAIQIGEPLRII 58

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+  +D  +     V INP I      +    E   S+P+    V+R   I V Y D   
Sbjct: 59  VLKKKDGTYE----VMINPTIYGKEGQYFASTESDESLPNIEVTVQRYPVIKVMYEDLQG 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +   A    A  LQ ++D + G    D LS
Sbjct: 115 NQKFYTAKDDEAVLLQRKIDMVFGGYLFDKLS 146


>gi|168209867|ref|ZP_02635492.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
 gi|170712027|gb|EDT24209.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
          Length = 136

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + +P+V     +L   + S    K +   + +ID++++ +       +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DVLFLGQKSELATKED---IGIIDDLVDTLRVNLESCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + +       +  +NP I+     +   +E CLS+  +R    R   I V Y+D 
Sbjct: 55  ILVFSIGNII-----VPMVNPVILKKEKSYET-EESCLSLTGFR-KTTRYEIIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH +GI+ 
Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136


>gi|332363261|gb|EGJ41046.1| peptide deformylase [Streptococcus sanguinis SK49]
          Length = 136

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 9/130 (6%)

Query: 19  RPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76
           +P E+ + + + L  ++ + + +   + IGLAA  IGV  R+++       +   P+V  
Sbjct: 14  QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLVPVVMF 68

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136
           NP +++ S  +   +EGCLS+   R   +R   ITV Y+D + Q Q +   GL A   QH
Sbjct: 69  NPVLLSKSGPYKT-EEGCLSLVGSR-PTQRYQEITVDYLDKHWQQQTMTLKGLPAQICQH 126

Query: 137 ELDHLNGILF 146
           ELDHL GI+ 
Sbjct: 127 ELDHLEGIII 136


>gi|160935285|ref|ZP_02082667.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441643|gb|EDP19343.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC
           BAA-613]
          Length = 173

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN----SDIMNLIDNMLEVMYSTDGIG--LAAVQIGVL 55
           V++ +++  +P L   S+ ++         +   + + L    +  G+G  +AA QIGV 
Sbjct: 14  VERTILLLGNPELYEASQEVKIEELHQMEQVREDLKDTLLAFRARYGVGRAIAAPQIGVK 73

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R++      + H   P++FINP++     +     + C+S PD    VKR     + Y 
Sbjct: 74  KRVI------YRHLDTPVLFINPRLTFPEQEMIDVLDDCMSFPDLLVRVKRYKRCIIYYK 127

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           D       +   G ++  +QHE DHL+GIL
Sbjct: 128 DLEWNDCSMELKGDMSELIQHEYDHLDGIL 157


>gi|254520028|ref|ZP_05132084.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA]
 gi|226913777|gb|EEH98978.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA]
          Length = 136

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + +P+V     IL   + S    K +   + +ID++++ + +     +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DILFLGQKSEYATKAD---VAVIDDLVDTLRANLEQCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + D       +  +NP I+     +   +E CLS+  +R    R   I V Y+D 
Sbjct: 55  ILVFSIGDII-----VPMVNPVIVKKDKVYEA-EESCLSLSGFR-KTMRYEAIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH  GI+ 
Sbjct: 108 NFKKHKQTFTGFTAQVIQHEIDHFEGIII 136


>gi|42519881|ref|NP_965811.1| peptide deformylase [Lactobacillus johnsonii NCC 533]
 gi|41584171|gb|AAS09777.1| polypeptide deformylase [Lactobacillus johnsonii NCC 533]
          Length = 137

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 15/149 (10%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57
           M  KP++   D + L+  S P  K +   +    ++ + + S      GLAA  IGV  R
Sbjct: 1   MAVKPIIH--DELSLKFKSLPATKQD---LGAATDLKDTLLSNKDRAAGLAANMIGVQKR 55

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++ + +        P+V +NP I+   D +  Y EGCLS+   R   +R   ITV+Y + 
Sbjct: 56  IIALFVGPL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGER-PTERYKTITVKYQNE 108

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +        A  +QHE+DH NGIL 
Sbjct: 109 NLETRQQSFSDFTAEVIQHEVDHCNGILI 137


>gi|325696895|gb|EGD38782.1| peptide deformylase [Streptococcus sanguinis SK160]
          Length = 136

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 9/118 (7%)

Query: 31  LIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88
           L  ++   + +   + +GLAA  IGV  R+++       +   P+V  NP + + S  + 
Sbjct: 26  LAQDLQNTLQANRENCLGLAANMIGVRKRVIIF-----LYGLVPVVMFNPVLRSKSGPYQ 80

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
             +EGCLS+   R   +R   ITV Y+D N Q Q +   GL A   QHELDHL GIL 
Sbjct: 81  T-EEGCLSLTGSR-PTQRYQEITVDYLDKNWQQQTMTLKGLPAQICQHELDHLEGILI 136


>gi|291519179|emb|CBK74400.1| N-formylmethionyl-tRNA deformylase [Butyrivibrio fibrisolvens 16/4]
          Length = 136

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + K +V   D I L++ S P  + ++    +I ++++ + +     +G+AA  IGV  ++
Sbjct: 1   MVKQIVK--DQIFLQQKSEPATEADA---QVIVDLMDTLKANIDRCVGMAANMIGVKKQI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V+              +NP I   S  +   +E CLS+   R  V R   I V Y+D N
Sbjct: 56  IVVAAGPFI-----FPMVNPVITKKSGKYET-EESCLSLDGVRPCV-RYDEIEVDYLDQN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            Q +     G  A  +QHE+ H +G L 
Sbjct: 109 FQPKHGKYSGFTAQIIQHEIQHFSGELI 136


>gi|325289165|ref|YP_004265346.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964566|gb|ADY55345.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 136

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 12/142 (8%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQ 64
           +I  +  LR  S P    +  +   + ++L+ + +  G  +GLAA  IGV  R++ +   
Sbjct: 5   IIKDEAFLRIPSAPAAAEDLSV---VQDLLDTLSANAGCCVGLAANMIGVAKRIIAV--- 58

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +V +NP+I+  S+ +   +E CLS+   R   +R   I V+Y D   Q ++ 
Sbjct: 59  --TAEGGYLVMLNPEIVKQSEPYET-EEACLSLAGTR-KARRCKNIRVQYQDTALQTRLQ 114

Query: 125 YADGLLATCLQHELDHLNGILF 146
              G  A  +QHE+DH NGIL 
Sbjct: 115 NFKGFTAQIIQHEIDHCNGILI 136


>gi|291547509|emb|CBL20617.1| N-formylmethionyl-tRNA deformylase [Ruminococcus sp. SR1/5]
          Length = 136

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P  K +   + +  ++ + + +     +G+AA  IGV   ++++++        
Sbjct: 12  LGQPSEPATKAD---IQVGKDLQDTLQANRERCVGMAANMIGVKKNIIIVNMGFIN---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP I++  D +   +EGCLS+   R    R   I V Y D   + Q     G  A
Sbjct: 65  -VVMFNPVIVSKRDMYET-EEGCLSLDGVR-KTTRYQEIEVEYYDFKWKKQRQKLSGWTA 121

Query: 132 TCLQHELDHLNGILF 146
              QHE+DHL+G + 
Sbjct: 122 QICQHEIDHLSGKII 136


>gi|260589802|ref|ZP_05855715.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|331083229|ref|ZP_08332345.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539843|gb|EEX20412.1| peptide deformylase [Blautia hansenii DSM 20583]
 gi|330404618|gb|EGG84158.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 136

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L + S P  K +  I   +++ L        +G+AA  IGV   +++I++         +
Sbjct: 12  LAQKSEPATKEDLHIGQDLEDTLAANRER-CVGMAANMIGVKKNIIIINMGFVD-----V 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           +  NP I+     +   +EGCLS+   R  V R   I V Y D N + Q     G  A  
Sbjct: 66  LMFNPVIVKKDTPYET-EEGCLSLEGVRPAV-RFQNIEVEYYDKNWKKQRQKLTGWTAQI 123

Query: 134 LQHELDHLNGILF 146
            QHE+DHL+GI+ 
Sbjct: 124 CQHEIDHLDGIII 136


>gi|148377446|ref|YP_001256322.1| formylmethionine deformylase [Mycoplasma agalactiae PG2]
 gi|148291492|emb|CAL58878.1| Formylmethionine deformylase [Mycoplasma agalactiae PG2]
          Length = 187

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 73/167 (43%), Gaps = 20/167 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVL 55
            LV  P  +LR+ S  +   + S+ + L   M+  +  +         G+G+AAVQ G+L
Sbjct: 7   DLVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAAVQYGIL 66

Query: 56  YRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLS----IPDYRADVK 105
            R+  I    D+ D   +    VF NP II  S+        EGCLS    IP+    V 
Sbjct: 67  KRVFYINITEDMVDDKKQVLRDVFFNPTIIAMSNSKIALSQGEGCLSVGRNIPNQSGLVY 126

Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLS 151
           R   I +       +    Y   G  A   QHELDHL G LFID + 
Sbjct: 127 RHKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRID 173


>gi|167756524|ref|ZP_02428651.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402]
 gi|167702699|gb|EDS17278.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402]
          Length = 189

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 22/174 (12%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++   +  +R VS+ +   I ++   L+  M E + ++              +G+A
Sbjct: 3   TMKDIIDDHNEKIREVSKEVALPITNEERELLLQMHEFLVNSQDPETSEKYDLRPAVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDD--FSVYQEGCLSI-PDY 100
           A+Q+G+  R+  I + D     N +       +NPKII+ ++   +    EGCLS+  + 
Sbjct: 63  AIQLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLSVNDEV 122

Query: 101 RADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +  V R A +TV+  D    Q   I A G L+ CLQHELDH  G LF D +++ 
Sbjct: 123 QGYVPRYAKVTVKGYDVLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINKE 176


>gi|218283358|ref|ZP_03489392.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989]
 gi|218215912|gb|EEC89450.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989]
          Length = 145

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + KP++   +  L   S P  K+++    +  ++ + +  YS   +G+AA  IGV   ++
Sbjct: 10  MIKPIMK-DEAFLAIKSAPATKMDT---QVAQDLKDTLQAYSDQCVGMAANMIGVSKNII 65

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +  ++        +V  NPKI   S  + V +EGCLS+   R +  R   ITV Y D + 
Sbjct: 66  IFAIEPAQ-----IVMYNPKITKKSRPYKV-KEGCLSLEGER-NTTRYENITVEYQDESF 118

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +       G +A  +QHE+DH NGI+ 
Sbjct: 119 KKCKQSYSGFVAQIIQHEIDHCNGIII 145


>gi|300121292|emb|CBK21672.2| unnamed protein product [Blastocystis hominis]
          Length = 283

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 23/183 (12%)

Query: 9   FPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67
             + +LR+  R I +  + ++ +   N +      +  G++A Q+    R+ VI  +D++
Sbjct: 16  LGEKVLRQKCRLIKDPTSDEMQDFAMNAMFTCIRNNAFGVSAPQLYRPIRMFVI--RDYS 73

Query: 68  HRKNP-------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
              +P             M + NP+I + S       E CLS P   A V R   I + Y
Sbjct: 74  TVPDPSQLSAEQHMSLPLMPYFNPRIESRSRKLMGEFESCLSDPWNVAFVARPHTIGISY 133

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFID-------HLSRLKRDMITKKMSKLVQ 167
           +D   ++Q     G  A   QHE DHL G    D       ++S+ +         K+  
Sbjct: 134 IDGFGKYQEKEISGWEAQVFQHEYDHLEGKTMADMCTQKGLYMSKERYKRCEAYWKKVEN 193

Query: 168 LRD 170
           L D
Sbjct: 194 LPD 196


>gi|293402350|ref|ZP_06646487.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304197|gb|EFE45449.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 139

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 9/136 (6%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRK 70
           +L++ S P  + +  +     N+LE + + +   +G+AA  IGV  R++     D     
Sbjct: 11  LLQKTSEPATEKDLWVAK---NLLETLQAHEDRCVGMAANMIGVFKRIIAFVDIDTGSH- 66

Query: 71  NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130
              V +NP+II  S +  + QE CLSI   R   +R   I VRY D +   +I       
Sbjct: 67  --WVMLNPEIIKTSKETYLAQEQCLSISGIR-QTRRYRRIKVRYQDEHMNIKIKTFHDKT 123

Query: 131 ATCLQHELDHLNGILF 146
           A  +QHE+DH NGIL 
Sbjct: 124 AQIIQHEIDHCNGILI 139


>gi|291320109|ref|YP_003515367.1| formylmethionine deformylase [Mycoplasma agalactiae]
 gi|290752438|emb|CBH40409.1| Formylmethionine deformylase [Mycoplasma agalactiae]
          Length = 187

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 73/167 (43%), Gaps = 20/167 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVL 55
            LV  P  +LR+ S  +   + S+ + L   M+  +  +         G+G+AAVQ G+L
Sbjct: 7   DLVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAAVQYGIL 66

Query: 56  YRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLS----IPDYRADVK 105
            R+  I    D+ D   +    VF NP II  S+        EGCLS    IP+    V 
Sbjct: 67  KRVFYINITEDMVDDKSQILRDVFFNPTIIAMSNSKIALSQGEGCLSVRRNIPNQSGLVY 126

Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLS 151
           R   I +       +    Y   G  A   QHELDHL G LFID + 
Sbjct: 127 RHKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRID 173


>gi|301301079|ref|ZP_07207239.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851349|gb|EFK79073.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 136

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + +      IL + S P  K +   + ++ ++++ +  +    +G+AA  IG    ++
Sbjct: 1   MIRDI-NHDVKILSKKSTPASKND---IAIVQDLVDTLNYHRDHCVGMAANMIGKNKCII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                        +  INP I   S  +S   EGCLS+   R +  R   I V Y++ + 
Sbjct: 57  ACQFGPLI-----VAMINPVITKKSQKYSTS-EGCLSLTGER-ETTRFNKIKVSYLNQSF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q      +G  A  +QHE+DH NGIL 
Sbjct: 110 QKVHATFEGFNAQIIQHEIDHCNGILI 136


>gi|227543949|ref|ZP_03973998.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
 gi|300909699|ref|ZP_07127160.1| peptide deformylase [Lactobacillus reuteri SD2112]
 gi|227186065|gb|EEI66136.1| peptide deformylase [Lactobacillus reuteri CF48-3A]
 gi|300893564|gb|EFK86923.1| peptide deformylase [Lactobacillus reuteri SD2112]
          Length = 136

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + KP++     +L + +    K +     L +++++ +  +  + +G+AA  IGV    +
Sbjct: 1   MIKPIIK-DQQLLAKKATLTTKADLP---LANDLIDTLNAHQAECVGMAANMIGVNKNAI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +  +         ++  NP+I+  S  +    EGCLS+   R   KR   ITV++ + + 
Sbjct: 57  IARIGPFN-----VLMFNPQIVAKSHPYQTT-EGCLSLSGTR-PTKRYKQITVKFRNQSW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q Q +      A  +QHE+DH NGI+ 
Sbjct: 110 QVQTLELTDFAAEIIQHEIDHCNGIII 136


>gi|225859308|ref|YP_002740818.1| peptide deformylase [Streptococcus pneumoniae 70585]
 gi|303255336|ref|ZP_07341406.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|303260177|ref|ZP_07346149.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|303262567|ref|ZP_07348508.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|303264969|ref|ZP_07350884.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|303266432|ref|ZP_07352320.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|303269392|ref|ZP_07355162.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|225720965|gb|ACO16819.1| polypeptide deformylase [Streptococcus pneumoniae 70585]
 gi|301794560|emb|CBW37004.1| peptide deformylase [Streptococcus pneumoniae INV104]
 gi|301802269|emb|CBW35021.1| peptide deformylase [Streptococcus pneumoniae INV200]
 gi|302597704|gb|EFL64780.1| peptide deformylase [Streptococcus pneumoniae BS455]
 gi|302636284|gb|EFL66778.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292]
 gi|302638674|gb|EFL69137.1| peptide deformylase [Streptococcus pneumoniae SP-BS293]
 gi|302641060|gb|EFL71437.1| peptide deformylase [Streptococcus pneumoniae BS458]
 gi|302644010|gb|EFL74269.1| peptide deformylase [Streptococcus pneumoniae BS457]
 gi|302645488|gb|EFL75720.1| peptide deformylase [Streptococcus pneumoniae BS397]
 gi|332073889|gb|EGI84367.1| polypeptide deformylase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 136

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS P  + +   + L  ++ + + +     +GLAA  IG+  R+++
Sbjct: 6   VKDILF-----LSQVSHPASQED---LYLARDLQDTLLANRDTCVGLAANMIGMQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++F   +   +EGCLS+   R+  KR   I + Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLSFEGSYEA-EEGCLSLVGVRS-TKRYETIRLAYRDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q I   G  A   QHELDHL G + 
Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136


>gi|116493404|ref|YP_805139.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745]
 gi|116103554|gb|ABJ68697.1| N-formylmethionyl-tRNA deformylase [Pediococcus pentosaceus ATCC
           25745]
          Length = 136

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 12/142 (8%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQ 64
           VI    IL + S P  K +  +   + ++++ + +     +G+AA  IGV  R++V+ + 
Sbjct: 5   VIHDQQILSQTSIPATKQDLSV---VMDLMDTLKANSERCVGMAANMIGVHKRIIVVTMG 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +  INP I+   + ++  +EGCLS+   R+   R   I V+Y+D   +    
Sbjct: 62  MMN-----VPMINPVILKKGNPYTT-EEGCLSLTGERS-TTRYDEIEVQYLDLEFKKHTQ 114

Query: 125 YADGLLATCLQHELDHLNGILF 146
                +A  +QHE+DH +GI+ 
Sbjct: 115 EFKEFIAQIIQHEVDHCDGIII 136


>gi|225350925|ref|ZP_03741948.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158381|gb|EEG71623.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 141

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           P L + S        + + +  ++ + + +     +G+AA  IGV  R++    +D   R
Sbjct: 10  PFLSQPSAEALN-TPEDLAVAQDLKDTLDAHRNGCVGMAANMIGVSKRIIAFVDEDFGDR 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               V  NP I      +    EGCLS+   R  V R   I V Y D   + +     G 
Sbjct: 69  I--FVMFNPTITAKDGAYDAS-EGCLSLKGERRTV-RFQRIEVSYADRKFRERHATFTGF 124

Query: 130 LATCLQHELDHLNGILF 146
            A  +QHE+DH  GI+ 
Sbjct: 125 TAQIIQHEIDHCEGIII 141


>gi|237733122|ref|ZP_04563603.1| polypeptide deformylase [Mollicutes bacterium D7]
 gi|229383804|gb|EEO33895.1| polypeptide deformylase [Coprobacillus sp. D7]
          Length = 186

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 22/172 (12%)

Query: 4   KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50
           K ++   +  +R VS+ +   I ++   L+  M E + ++              +G+AA+
Sbjct: 2   KDIIDDHNEKIREVSKEVALPITNEERELLLQMHEFLVNSQDPETSEKYDLRPAVGIAAI 61

Query: 51  QIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDD--FSVYQEGCLSI-PDYRA 102
           Q+G+  R+  I + D     N +       +NPKII+ ++   +    EGCLS+  + + 
Sbjct: 62  QLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLSVNDEVQG 121

Query: 103 DVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            V R A +TV+  D    Q   I A G L+ CLQHELDH  G LF D +++ 
Sbjct: 122 YVPRYAKVTVKGYDILTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINKE 173


>gi|152991786|ref|YP_001357507.1| hypothetical protein SUN_0190 [Sulfurovum sp. NBC37-1]
 gi|151423647|dbj|BAF71150.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 273

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + LVI+PD  +   S  +   N  + +++++M + M + D   +AA+QI   Y +++I
Sbjct: 1   MVQKLVIYPDDRMNCTSTDVRSFNQTLWDVLEDMRDTMLAHDIKAMAAMQIAYPYNIILI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ- 120
              +  H      +INP+II  ++D    +E  +  PD    + R   I + Y D N Q 
Sbjct: 61  KEGEEYHE-----YINPRII-KNEDLFDSEESSIHYPDVTVTIPRYGKIKLVYEDRNGQV 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           H     D  LA  LQ ++D   G   +D + +  R+ I   ++
Sbjct: 115 HYEDIEDRELAATLQRKIDITFGGNILDKVDKNTREKILDALA 157


>gi|329116594|ref|ZP_08245311.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
 gi|326906999|gb|EGE53913.1| peptide deformylase [Streptococcus parauberis NCFD 2020]
          Length = 136

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + + +V   DP+ L   ++   K +  I   + + L   +    IGLAA  IG    +++
Sbjct: 1   MLRTIVK--DPLFLSEKAQVATKEDLWIGKDLQDTL-TYHRDRCIGLAANMIGEKKAVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I +         +V  NP+II  SD +   +E CLS+       KR   ITVRY+D N +
Sbjct: 58  ISMGFVD-----LVMFNPQIIKQSDVYQT-EESCLSLTG-SKPTKRFETITVRYLDMNWR 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            + +   GL A   QHE+DHL G L 
Sbjct: 111 EKNLTLTGLPAQICQHEMDHLEGKLI 136


>gi|291457332|ref|ZP_06596722.1| peptide deformylase [Bifidobacterium breve DSM 20213]
 gi|291381167|gb|EFE88685.1| peptide deformylase [Bifidobacterium breve DSM 20213]
          Length = 139

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR  S P E  +   M    ++++ + +     +G+AA  IGV  R++    +D   R  
Sbjct: 12  LRTPSEPAEPSDEAAMQ---DLVDTLEANRSRCVGMAANMIGVGKRIIAFVDEDLGGRV- 67

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V +NP I T SD     QEGCLS+   R    R   I V Y D   + +     G  A
Sbjct: 68  -TVMLNPVI-TASDGAFDTQEGCLSLAGER-RTLRYRRIEVDYEDRRFRARHATFTGWTA 124

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH NGI+ 
Sbjct: 125 QIIQHEVDHCNGIII 139


>gi|322372342|ref|ZP_08046878.1| peptide deformylase [Streptococcus sp. C150]
 gi|321277384|gb|EFX54453.1| peptide deformylase [Streptococcus sp. C150]
          Length = 136

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYR 57
           + KP+V     +  L + S    K +   + L  ++ + +  Y    +G+AA  IGV  R
Sbjct: 1   MIKPIVK---DVFFLGQKSTEATKED---LYLAKDLRDTLEFYKDACVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++++++         +V  NP +++ S  F   +E CLS+   R   +R   I V Y+D 
Sbjct: 55  VIIVNIGFVN-----LVMFNPVLVSKSSLFQT-EESCLSLEGSR-PTRRYESIEVAYLDE 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
               + +   G+LA  +QHELDHL GI+ 
Sbjct: 108 QWMPKQLSFSGMLAQIIQHELDHLEGIII 136


>gi|169350936|ref|ZP_02867874.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552]
 gi|169291998|gb|EDS74131.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552]
          Length = 189

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 22/173 (12%)

Query: 2   VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48
             K ++   +  +R VS+ +   ++ D  +L+  M E + ++              +G+A
Sbjct: 3   TMKDIIDDSNKKIREVSKEVPLPLSDDDRDLLFKMHEFLVNSQDPELSKKYDLRPAVGIA 62

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPM-----VFINPKIITFSDD--FSVYQEGCLSI-PDY 100
           A+Q+G+  R+  I + D+  + N +       +NPKI++++    F    EGCLS+  + 
Sbjct: 63  AIQLGIPKRMCAIHVLDYDSKGNVVKANDYALVNPKIVSYTQKNSFLRDGEGCLSVNKEV 122

Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           +  V R A +TV   D    Q   I A G L+ CLQHELDH  G LF D +++
Sbjct: 123 QGYVPRHAKVTVEGYDLLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINK 175


>gi|328945770|gb|EGG39921.1| peptide deformylase [Streptococcus sanguinis SK1087]
          Length = 136

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L++ S    + +  +   + + L+     + +GLAA  IGV  R+++       +   P+
Sbjct: 12  LQQPSEQASREDLYLAQDLQDTLQTNRE-NCLGLAANMIGVRKRVIIF-----LYGLVPV 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP +   S  +   +EGCLS+   R   +R   ITV Y+D N Q Q +   GL A  
Sbjct: 66  VMFNPVLRYKSGPYQT-EEGCLSLTGSR-LTQRYQEITVDYLDKNWQQQTMTLKGLPAQI 123

Query: 134 LQHELDHLNGILF 146
            QHELDHL GI+ 
Sbjct: 124 CQHELDHLEGIII 136


>gi|171920111|ref|ZP_02690482.2| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508474|ref|ZP_02689332.2| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701869|ref|ZP_02553797.2| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|171902473|gb|EDT48762.1| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675891|gb|EDT87796.1| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701174|gb|EDU19456.1| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 198

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 18/179 (10%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P P+LR V++ IE  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPVLREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAF 109
           G   R   I   D A +++  + INP II  S + +     EGCLS+ D     V R+  
Sbjct: 81  GWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKK 139

Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + V+  D  ++  I     G++A C+QHE+ HL+  L+ D++++ +        +K+ +
Sbjct: 140 VHVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQQQPFYADPSWTKIGR 198


>gi|302876100|ref|YP_003844733.1| formylmethionine deformylase [Clostridium cellulovorans 743B]
 gi|307686823|ref|ZP_07629269.1| peptide deformylase [Clostridium cellulovorans 743B]
 gi|302578957|gb|ADL52969.1| formylmethionine deformylase [Clostridium cellulovorans 743B]
          Length = 136

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + KP+V     +L   + S    K +   + ++D++++ + S   + +GLAA  IGV  R
Sbjct: 1   MIKPIVK---DVLFLGQKSEEATKND---IVVVDDLIDTLRSNLENCVGLAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + D       +  INP I+   +     +E CLS+  +R   KR   I V Y+D 
Sbjct: 55  ILVFTIGDII-----VPMINPVILKK-EKLYETEESCLSLIGFR-KTKRYEMIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
             + Q     G  A  +QHE+DH  GI+ 
Sbjct: 108 AFKKQKQVFTGFTAQIIQHEMDHFEGIII 136


>gi|327461858|gb|EGF08189.1| peptide deformylase [Streptococcus sanguinis SK1]
          Length = 136

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L+++S    + +   + L  ++ + + +   + IGLAA  IGV  R+++       +   
Sbjct: 12  LQQLSERASRED---LYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P+V  NP + + S  +   +E CLS+   R   +R   IT+ Y+D + Q Q +   GL A
Sbjct: 64  PVVMFNPVLRSKSGPYQT-EESCLSLVGSR-PTQRYQEITIDYLDKHWQQQTMTLKGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GI+ 
Sbjct: 122 QICQHELDHLEGIII 136


>gi|238061746|ref|ZP_04606455.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237883557|gb|EEP72385.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 509

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 11/156 (7%)

Query: 6   LVIFPDPILRRVSR----PIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           +V     +LR+ SR    P E     ++   + + +  + E+   + G+G+AA Q+G+ +
Sbjct: 337 IVQRGADLLRQPSRQFDLPAEAGVAREVVDRLGSALVRLDELHPFSKGVGIAATQLGLAW 396

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
              V+   D A    P+V +NP+++  S D     EGCLS  D+R  V RS  I V +  
Sbjct: 397 AAAVVRPPDRA--AEPVVLLNPRVVDSSPDTDEQYEGCLSFFDHRGLVPRSLRIDVEHAQ 454

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +    I   +  +A  + HE+DHL G L++D ++ 
Sbjct: 455 WDGGRLITSFEFAMARLVAHEIDHLEGRLYVDRMTP 490


>gi|291523053|emb|CBK81346.1| N-formylmethionyl-tRNA deformylase [Coprococcus catus GD/7]
          Length = 136

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P  + +   +    ++ + + +   + +G+AA  IG+   ++++++        
Sbjct: 12  LGQKSEPATEAD---IQTGRDLQDTLKAHRAECVGMAANMIGIKKNVIIVNMGIVD---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP ++  S  +   +EGCLS+   R    R   I V Y D +   +     G  A
Sbjct: 65  -LVMFNPVLLKKSGPYET-EEGCLSLTGVR-KTTRYREIEVEYRDMSWTVRRQKLSGWTA 121

Query: 132 TCLQHELDHLNGILF 146
              QHE+DHLNGI+ 
Sbjct: 122 QICQHEMDHLNGIII 136


>gi|322390160|ref|ZP_08063692.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
 gi|321143120|gb|EFX38566.1| peptide deformylase [Streptococcus parasanguinis ATCC 903]
          Length = 136

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S      +     L  ++ + + +   + +GLAA  IGV  R ++I + +      
Sbjct: 12  LGQKSEEATPED---RTLALDLQDTLNAHLLECVGLAANMIGVKKRAIIIRMGNEN---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP ++     +   +EGCLS+   R    R   +TV Y D N + + I+  G  A
Sbjct: 65  -LVMFNPVLLEKKKPYQT-EEGCLSLVGSR-PTTRYEEMTVAYRDVNWKAKTIHLSGFPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHE+DHL G++ 
Sbjct: 122 QICQHEMDHLEGVII 136


>gi|182624168|ref|ZP_02951955.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
 gi|177910784|gb|EDT73144.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
          Length = 136

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + +P+V     +L   + S    K +   + +ID++++ + +     +G+AA  IGV  R
Sbjct: 1   MIRPIVK---DVLFLGQKSELATKED---IGIIDDLVDTLRANLESCVGMAANMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + +       +  +NP I+     +   +E CLS+  +R    R   I V Y+D 
Sbjct: 55  ILVFSIGNII-----VPMVNPVILKKEKSYET-EESCLSLTRFR-KTTRYEIIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N +       G  A  +QHE+DH  GI+ 
Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFEGIII 136


>gi|239940680|ref|ZP_04692617.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998]
 gi|239987159|ref|ZP_04707823.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 11379]
 gi|291444118|ref|ZP_06583508.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291347065|gb|EFE73969.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 189

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 16/157 (10%)

Query: 6   LVIFPDPILRRVSR----PIEKINSDIMNLIDNMLEVMYS-------TDGIGLAAVQIGV 54
           +V     IL   +R    P E+   +   ++D +   M           G+GLAA QIG+
Sbjct: 15  VVQQGAAILTERARAFDLPAER--DEAERVVDELFAAMDRIGQVHPFAKGMGLAAPQIGI 72

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                V+     A     +V +NP+I    ++   + EGCLS  D R  V R   ITV  
Sbjct: 73  SRAAAVVQPPGDAPS---IVLLNPRITVCCNESDEHYEGCLSFFDVRGPVPRPLTITVET 129

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              + +      +  LA  + HE+DHL G+L+   ++
Sbjct: 130 TTQSGETVTTAYERGLARLIHHEIDHLGGLLYTARMN 166


>gi|260663513|ref|ZP_05864403.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
 gi|260552054|gb|EEX25107.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN]
          Length = 136

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           +  P+      +L++ +RP    +     L + ++  +  +    IG+AA  IG    ++
Sbjct: 1   MIYPI-NHDQQVLQQPARPATNAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + L         +  +NP+++  +  +   +EGCLS+   R+   R   ITV Y D   
Sbjct: 57  AVSLGPVN-----VAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             Q +   GL A  +QHE DHL GIL 
Sbjct: 110 AQQELELTGLAAQAVQHECDHLRGILI 136


>gi|296875884|ref|ZP_06899945.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
 gi|296433125|gb|EFH18911.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912]
          Length = 136

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S      +     L  ++ + + +   + +GLAA  IGV  R ++I +        
Sbjct: 12  LGQKSEEATPED---RTLALDLQDTLNAHLLECVGLAANMIGVKKRAIIIRMGSEN---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP ++     +   +EGCLS+   R    R   I+V Y D N + + I+  G  A
Sbjct: 65  -LVLFNPVLLEKKKPYQT-EEGCLSLVGSR-PTTRYEEISVAYRDVNWKAKKIHLSGFPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHE+DHL GI+ 
Sbjct: 122 QICQHEMDHLEGIII 136


>gi|259048010|ref|ZP_05738411.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
 gi|259035349|gb|EEW36604.1| peptide deformylase [Granulicatella adiacens ATCC 49175]
          Length = 137

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 8   IFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQ 64
           I  DP+ L + S   +        ++ ++ + + +     +G+AA  IGV   ++++ + 
Sbjct: 5   IMKDPLFLSQKSSVADP--KADAQVVRDLQDTLRANRDRCVGMAANMIGVKKNIIIVAIG 62

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
                   +V +NP+I      +   +EGCLS         R   I V Y D + +    
Sbjct: 63  PMD-----LVMLNPRITKKQGPYET-EEGCLSHTG-TKKTTRYQTIEVAYTDPSGKKHTG 115

Query: 125 YADGLLATCLQHELDHLNGILF 146
                 A  +QHE+DHL GIL 
Sbjct: 116 TFTDFTAQVIQHEIDHLEGILI 137


>gi|325693656|gb|EGD35575.1| peptide deformylase [Streptococcus sanguinis SK150]
 gi|327458954|gb|EGF05302.1| peptide deformylase [Streptococcus sanguinis SK1057]
 gi|332360611|gb|EGJ38421.1| peptide deformylase [Streptococcus sanguinis SK1056]
          Length = 136

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L+++S    + +   + L  ++ + + +   + IGLAA  IGV  R+++       +   
Sbjct: 12  LQQLSERASRED---LYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P+V  NP +++ S  +   +EGCLS+   R   +R   ITV Y+D + Q Q +   GL A
Sbjct: 64  PVVMFNPVLLSKSGPYKT-EEGCLSLVGSR-PTQRYQEITVDYLDKHWQQQTMTLKGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GI+ 
Sbjct: 122 QICQHELDHLEGIII 136


>gi|13637693|sp|Q48661|DEF_LACLA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
          Length = 196

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 29/176 (16%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++    P LR V+  +   ++ + + L + ML+ ++++             G+GLAA Q
Sbjct: 6   DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 65

Query: 52  IGVLYRLVVI-------------DLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS 96
           +G+L +++ +             ++      K   +  N K+++ S  D      EGCLS
Sbjct: 66  LGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 125

Query: 97  IP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  +    V R A +TV Y +   + + I      A C+QHE+DH NG++F DH++
Sbjct: 126 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 181


>gi|154486846|ref|ZP_02028253.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis
           L2-32]
 gi|154084709|gb|EDN83754.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis
           L2-32]
          Length = 141

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           P L + S   E    D+  +  ++ + + +     +G+AA  IGV  R++    +D   R
Sbjct: 10  PFLSQPSAAAENTEEDL-AVAQDLKDTLDAHRNGCVGMAANMIGVPKRIIAFVDEDFGGR 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               V  NP I      F    EGCLS+   R  V R   I V YMD   + +     G 
Sbjct: 69  I--FVMFNPHITAEDGAFDTA-EGCLSLQGERRTV-RYQRIEVDYMDRKFRERHAAFTGF 124

Query: 130 LATCLQHELDHLNGILF 146
            A  +QHE+DH +G++ 
Sbjct: 125 TAQIIQHEIDHCDGVII 141


>gi|227515637|ref|ZP_03945686.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
 gi|227086067|gb|EEI21379.1| peptide deformylase [Lactobacillus fermentum ATCC 14931]
          Length = 136

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           +  P+      +L++ +RP    +     L + ++  +  +    IG+AA  IG    ++
Sbjct: 1   MIYPI-NHDQQVLQQPARPATSAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + L         +  +NP+++  +  +   +EGCLS+   R+   R   ITV Y D   
Sbjct: 57  AVSLGPVN-----VAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             Q +   GL A  +QHE DHL GIL 
Sbjct: 110 AQQELELTGLAAQAVQHECDHLRGILI 136


>gi|313890594|ref|ZP_07824222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121111|gb|EFR44222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 136

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58
           + + +V   DP  L+++S+   K +  I     ++ + +  +    +GLAA  IG   R+
Sbjct: 1   MIRQIVK--DPFFLQQISKQATKEDLPIGK---DLQDTLSFHREHCLGLAANMIGESKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++I +         ++  NPK++  ++ +   +E CLS+   +   +R   ITV Y+D N
Sbjct: 56  IIISMGFVD-----ILMFNPKLVKKTNPYVT-EESCLSLSGNQ-KTQRYQKITVEYLDLN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + + +  +GL A   QHELDHL+GIL 
Sbjct: 109 WRKKSLSLNGLAAQICQHELDHLDGILI 136


>gi|15672542|ref|NP_266716.1| peptide deformylase [Lactococcus lactis subsp. lactis Il1403]
 gi|281491026|ref|YP_003353006.1| peptide deformylase [Lactococcus lactis subsp. lactis KF147]
 gi|12723447|gb|AAK04658.1|AE006290_3 polypeptide deformylase [Lactococcus lactis subsp. lactis Il1403]
 gi|281374784|gb|ADA64304.1| Peptide deformylase [Lactococcus lactis subsp. lactis KF147]
 gi|326406061|gb|ADZ63132.1| peptide deformylase [Lactococcus lactis subsp. lactis CV56]
          Length = 211

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 29/176 (16%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++    P LR V+  +   ++ + + L + ML+ ++++             G+GLAA Q
Sbjct: 21  DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 80

Query: 52  IGVLYRLVVI-------------DLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS 96
           +G+L +++ +             ++      K   +  N K+++ S  D      EGCLS
Sbjct: 81  LGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 140

Query: 97  IP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  +    V R A +TV Y +   + + I      A C+QHE+DH NG++F DH++
Sbjct: 141 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 196


>gi|116511359|ref|YP_808575.1| peptide deformylase [Lactococcus lactis subsp. cremoris SK11]
 gi|125623399|ref|YP_001031882.1| peptide deformylase [Lactococcus lactis subsp. cremoris MG1363]
 gi|806487|gb|AAC41454.1| ORF211 [Lactococcus lactis subsp. cremoris]
 gi|116107013|gb|ABJ72153.1| N-formylmethionyl-tRNA deformylase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|124492207|emb|CAL97136.1| putative membrane protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070146|gb|ADJ59546.1| peptide deformylase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 211

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 29/176 (16%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            ++    P LR V+  +   ++ + + L + ML+ ++++             G+GLAA Q
Sbjct: 21  DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 80

Query: 52  IGVLYRLVVI-------------DLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLS 96
           +G+L +++ +             ++      K   +  N K+++ S  D      EGCLS
Sbjct: 81  LGLLKKVIAVLIPNEPEVDEEGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 140

Query: 97  IP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           +  +    V R A +TV Y +   + + I      A C+QHE+DH NG++F DH++
Sbjct: 141 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 196


>gi|301633662|gb|ADK87216.1| peptide deformylase [Mycoplasma pneumoniae FH]
          Length = 193

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 17/164 (10%)

Query: 16  RVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIGVLYRLVVIDL 63
             ++P++  ++   ++ I  M+  + ++            GIG+AA QIG   ++  I L
Sbjct: 20  EPTKPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHL 79

Query: 64  QDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD-CNA 119
            D    ++  + INPKII  S    F    EGCLS+P      V R  +IT+   D    
Sbjct: 80  MD-GGVEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQ 138

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +   I A GL   CLQHE DHL G  +   ++ L      K+  
Sbjct: 139 KEITITATGLFGMCLQHEFDHLQGRFYYHRINPLNPLFTNKEWK 182


>gi|293364031|ref|ZP_06610767.1| peptide deformylase [Mycoplasma alligatoris A21JP2]
 gi|292552521|gb|EFF41295.1| peptide deformylase [Mycoplasma alligatoris A21JP2]
          Length = 183

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML--------EVMYSTDGIGLAAVQ 51
           M    LV  P  +LR+ S  +   +  + ++L + M+        E      G+G+AAVQ
Sbjct: 1   MFDVKLVKLPKKVLRQKSVNVSIPLIQEDIDLAEKMIYHIDDSQKENSKFRPGVGVAAVQ 60

Query: 52  IGVLYRLVVIDLQDHAHRKN--PMVFINPKIITFSDDFSV--YQEGCLSI----PDYRAD 103
            G+L  +  + ++D  + K     V  NPKII+ S+  +     EGCLS+    P     
Sbjct: 61  YGILKNVFYVHVRDSVNNKEIFRDVLFNPKIISRSETKTALSEGEGCLSVHEDWPGQEGF 120

Query: 104 VKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           V R A + V       +        G +A   QHELDHL G LFID +++ +
Sbjct: 121 VHRDARVIVEAYSYFQKKVVTFDVFGYVAIVFQHELDHLQGNLFIDRINKKQ 172


>gi|294669088|ref|ZP_06734174.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291309080|gb|EFE50323.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 91

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
           +IT  +  + Y+EGCLS+P     V R+  +TV  +D   +   + ADGLLA C+QHELD
Sbjct: 1   MITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALDEKGEKFTLEADGLLAICIQHELD 60

Query: 140 HLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           HL GI+F++HLS+LK+  I  K+ K  +
Sbjct: 61  HLMGIVFVEHLSQLKQGRIKTKLKKRQK 88


>gi|261338163|ref|ZP_05966047.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
 gi|270276799|gb|EFA22653.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
          Length = 152

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + +RP +  N + + +  ++ + + +     +G+AA  IG    ++V    +      
Sbjct: 22  LAKPARPADPSNPEDLQIAQDLKDTLRAHSDGCVGMAANMIGEPVAIIVFVDDEMGGGI- 80

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
               +NP+I T    +    EGCLS+   RA V R+ +I V Y +   + +    +G  A
Sbjct: 81  -TTMLNPRITTAQQYYETA-EGCLSLDGERA-VTRAQYIEVDYDNTKGKPRHARFEGFTA 137

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH  G + 
Sbjct: 138 QIIQHEVDHCLGKII 152


>gi|13358028|ref|NP_078302.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762059|ref|YP_001752550.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|23396555|sp|Q9PQ25|DEF_UREPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083081|sp|B1AJA6|DEF_UREP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|11357006|pir||F82886 polypeptide deformylase UU465 [imported] - Ureaplasma urealyticum
 gi|6899459|gb|AAF30877.1|AE002143_2 polypeptide deformylase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827636|gb|ACA32898.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
          Length = 198

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 18/179 (10%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAF 109
           G   R   I   D A +++  + INP II  S + +     EGCLS+ D     V R+  
Sbjct: 81  GWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKK 139

Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + V+  D  ++  I     G++A C+QHE+ HL+  L+ D++++ +        +K+ +
Sbjct: 140 VHVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQQQPFYADPSWTKIGR 198


>gi|293400829|ref|ZP_06644974.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305855|gb|EFE47099.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 185

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 17/163 (10%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +V   DPI+R  S  +   ++ +   L+ +ML+ +  +              +G+AA+Q+
Sbjct: 8   IVKDSDPIVREKSVTVPIPMHEEDKELLMDMLQYVRDSQDSELAEKQNLRPAVGIAAIQL 67

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPD-YRADVKRSAF 109
           G+  +++ + +             NPKII+ S    +    EGCLS+ + +   V R+A 
Sbjct: 68  GIPKKMLAVVVPKDEEEDYEFALANPKIISESIQKAYLKNGEGCLSVEEEHEGIVPRAAR 127

Query: 110 ITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           I V+  D    +  +I A G LA  LQHE+DH NG LF DH++
Sbjct: 128 IKVKGFDLLRNEEIVISASGYLAIVLQHEMDHFNGTLFYDHIN 170


>gi|284048313|ref|YP_003398652.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731]
 gi|283952534|gb|ADB47337.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731]
          Length = 136

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + + ++   D   L++ S P   ++  +     ++LE + +   + +G+AA  IGV   +
Sbjct: 1   MIREIMR--DEYFLQQKSLPASPLDKPV---AIDLLETLKAHRDECVGMAANMIGVAKCI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +V++L         MV  NP II     +    EGCLS+   R    R   I V + D +
Sbjct: 56  IVVNLGLMD-----MVMFNPTIIKQEGPYETS-EGCLSLSGER-KTTRYRKIQVEFQDMD 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + Q +   G  A  +QHE+DHL GIL 
Sbjct: 109 FKKQTLEFTGFPAQIIQHEVDHLAGILI 136


>gi|107025411|ref|YP_622922.1| aminotransferase, class IV [Burkholderia cenocepacia AU 1054]
 gi|105894785|gb|ABF77949.1| branched chain amino acid: 2-keto-4-methylthiobutyrate
           aminotransferase [Burkholderia cenocepacia AU 1054]
          Length = 496

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 13/158 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M  + ++      LR V+RP++ + +    +  + +   L       G G  +AA QIG+
Sbjct: 1   MNTR-ILPVGTASLRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGI 59

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L        P V +NP+I+  SD      + C+  PD    V+R A ++VRY
Sbjct: 60  GQRMIALALDGW-----PDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRY 114

Query: 115 MDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLS 151
              + +     A    ++  +QHE+DHL+G L  D  +
Sbjct: 115 TTLDGEPHQRDALSPDVSELMQHEIDHLDGKLSFDRAT 152


>gi|317482099|ref|ZP_07941123.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916458|gb|EFV37856.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 139

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR  S      +     +I+++++ + +     +G+AA  IGV  R++V   +D   R  
Sbjct: 12  LRTPSEAAGPGDE---QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI- 67

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V +NP I T SD     QEGCLS+   R    R   I V Y D   + +     G  A
Sbjct: 68  -TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRYRRIEVNYEDRRFRARHATFTGWTA 124

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH NGI+ 
Sbjct: 125 QIIQHEVDHCNGIII 139


>gi|227891784|ref|ZP_04009589.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
 gi|227866443|gb|EEJ73864.1| peptide deformylase [Lactobacillus salivarius ATCC 11741]
          Length = 136

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + +      IL + S P  K +   + ++ ++++ +  +    +G+AA  IG    ++
Sbjct: 1   MIRDI-NHDVKILSKKSTPTSKND---IAIVQDLVDTLTYHRDHCVGMAANMIGKNKCII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
                        +  INP I   S  +S   EGCLS+   R +  R   I V Y++ + 
Sbjct: 57  ACQFGPLI-----VAMINPVITKKSQKYSTS-EGCLSLTGER-ETTRFNKIEVSYLNQSF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           Q      +G  A  +QHE+DH NGIL 
Sbjct: 110 QKVHATFEGFNAQIIQHEIDHCNGILI 136


>gi|37626213|gb|AAQ96588.1| hypothetical protein [Vibrio phage VP16C]
          Length = 137

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L  ++  +     D+  L+D M   M +  GIGLA  Q+GVL R++V+            
Sbjct: 11  LHAIAADVPH-GEDVTGLVDAMTAAMTAAGGIGLAGNQLGVLKRVIVVRAPKFKG----- 64

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
             +NP I   +      +EGCLS P    D KR   ITV   D + Q   + A GL A C
Sbjct: 65  CIVNPVITRHTSGHVNSREGCLSFPGKTVDKKRHNKITVEGFDAHWQPIKVEAKGLTAFC 124

Query: 134 LQHELDHLNGILF 146
           +QHE+DHLNG+  
Sbjct: 125 IQHEIDHLNGVTI 137


>gi|255525142|ref|ZP_05392086.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
 gi|296188109|ref|ZP_06856501.1| peptide deformylase [Clostridium carboxidivorans P7]
 gi|255511196|gb|EET87492.1| formylmethionine deformylase [Clostridium carboxidivorans P7]
 gi|296047235|gb|EFG86677.1| peptide deformylase [Clostridium carboxidivorans P7]
          Length = 136

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + KP+V     +L   + S    K +   M ++D++++ + +   + +GLA   IGV  R
Sbjct: 1   MIKPIVK---DVLFLGQKSEKATKDD---MAVVDDLMDTLKANLQNCVGLAGNMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + +       +  INP I+     +   +E CLS+   R   KR   I V Y+D 
Sbjct: 55  ILVFTVANLI-----VPMINPVILKKEKPYET-EESCLSLIGVR-KTKRYEMIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + Q     G  A  +QHE+DH  GI+ 
Sbjct: 108 NFKSQKQVFTGFTAQIIQHEMDHFEGIII 136


>gi|171741144|ref|ZP_02916951.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC
           27678]
 gi|283455486|ref|YP_003360050.1| peptide deformylase [Bifidobacterium dentium Bd1]
 gi|306823442|ref|ZP_07456817.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|309802744|ref|ZP_07696848.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
 gi|171276758|gb|EDT44419.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC
           27678]
 gi|283102120|gb|ADB09226.1| fms Peptide deformylase [Bifidobacterium dentium Bd1]
 gi|304553149|gb|EFM41061.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
 gi|308220808|gb|EFO77116.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
          Length = 141

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           P L + SR  +  + D   +  ++ + + +     +G+AA  IGV  R++    +D   R
Sbjct: 10  PFLEQPSRDAQNTDEDF-AVAQDLKDTLDAHRNSCVGMAANMIGVSKRIIAFVDEDFGGR 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               +  NP+I      F    EGCLS+   R  V R   I V Y D   + +     G 
Sbjct: 69  I--FIMFNPEITARDGAFDTS-EGCLSLQGERHTV-RHQRIEVTYFDRKFRERHAAFTGF 124

Query: 130 LATCLQHELDHLNGILF 146
            A  +QHE+DH  GI+ 
Sbjct: 125 TAQIIQHEVDHCAGIII 141


>gi|325690383|gb|EGD32387.1| peptide deformylase [Streptococcus sanguinis SK115]
          Length = 136

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L+++S    + +   + L  ++ + + +   + IGLAA  IGV  R+++       +   
Sbjct: 12  LQQLSERASRED---LYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIF-----LYGLV 63

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P+V  NP +++ S  +   +EGCLS+   R   +R   ITV Y+D + Q Q +   GL A
Sbjct: 64  PVVMFNPVLLSKSGPYKT-EEGCLSLVGSR-PTQRYQEITVDYLDKHWQQQTMTLKGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL G++ 
Sbjct: 122 QICQHELDHLEGVII 136


>gi|317057111|ref|YP_004105578.1| formylmethionine deformylase [Ruminococcus albus 7]
 gi|315449380|gb|ADU22944.1| formylmethionine deformylase [Ruminococcus albus 7]
          Length = 136

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57
           + + +V     +  L++ S   +K + DI   I ++ + + +     +G+AA  IG   R
Sbjct: 1   MVREIV---HDVIFLKKKSIKADKNDVDI---ITDLRDTLKANHDRCVGMAANMIGFNKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +++            +V INP I+  +  +   +EGCLS+   R   KR   ITV Y D 
Sbjct: 55  IIIFTAGIMD-----IVMINPVIVKKAQPYET-EEGCLSLTGVR-KTKRWEKITVEYQDT 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           +   +     G +A  +QHE DHL GI+ 
Sbjct: 108 SFNKKRGDFTGFVAQIIQHECDHLEGIII 136


>gi|320527454|ref|ZP_08028635.1| peptide deformylase [Solobacterium moorei F0204]
 gi|320132167|gb|EFW24716.1| peptide deformylase [Solobacterium moorei F0204]
          Length = 195

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 89/170 (52%), Gaps = 21/170 (12%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           ++   +P++R  S  +   ++ +   L+ +ML+ +  +              +G++A+Q+
Sbjct: 15  IIKDTNPLIREKSELVSLPLSKEDETLLRDMLQYVKDSTDEEKATKLNLRPAVGISAIQV 74

Query: 53  GVLYRLVVIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVK 105
           G+  R+  +   +     N +    + +NPKI++ S   +  +  EGCLS+ + +R  V 
Sbjct: 75  GIKKRMCAVAFDETDKDGNMVKYEFMLVNPKIVSRSVQPAYLESGEGCLSVENEHRGYVV 134

Query: 106 RSAFITVRYMDCNAQH-QIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
           R+A +T+R  D        I A G +A  LQHELDH++GILF DH+++ +
Sbjct: 135 RNARVTIRAFDLVQNQDVEIRARGYIAIVLQHELDHMDGILFYDHINKKE 184


>gi|219130004|ref|XP_002185165.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|217403344|gb|EEC43297.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 160

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 17/158 (10%)

Query: 8   IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            +PDPILRR ++P++        +      +     S   +GLAA Q GV  R+V +  +
Sbjct: 3   RWPDPILRRPAQPVDAHWFGTGTLQKACALLRATSVSEKAVGLAAQQCGVDARIVYLQPE 62

Query: 65  DHAHRKNP-----------MVFINPKIITFSDDFSVY--QEGCLSIP-DYRADVKRSAFI 110
           +     N            +  INP+I+  S +  V+  +E CL +P  + A V R +++
Sbjct: 63  ERHPLINRRSFQRTAELSEITMINPQIVERSPELDVHSWREHCLVLPPTFDATVLRDSWV 122

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           T+ + D + +   +   G +A  +QHELDH  GIL  D
Sbjct: 123 TIVFRDIHGRPHSVRLRGEMARAVQHELDHDRGILITD 160


>gi|296454738|ref|YP_003661881.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184169|gb|ADH01051.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 134

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR  S      +      I ++++ + +     +G+AA  IGV  R++V   +D   R  
Sbjct: 7   LRTPSEAAGPGDE---ATIQDLVDTLEANRSRCVGMAANMIGVSKRIIVFVDEDLGGRI- 62

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V +NP I T SD     QEGCLS+   R    R   I V Y D   + +     G  A
Sbjct: 63  -TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRCRRIEVNYEDRRFRARHATFTGWTA 119

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH NGI+ 
Sbjct: 120 QIIQHEVDHCNGIII 134


>gi|227546595|ref|ZP_03976644.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212912|gb|EEI80791.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291516343|emb|CBK69959.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           longum F8]
          Length = 134

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR  S      +     +I+++++ + +     +G+AA  IGV  R++V   +D   R  
Sbjct: 7   LRTPSEAAGPGDE---QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI- 62

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V +NP I T SD     QEGCLS+   R    R   I V Y +   + +     G  A
Sbjct: 63  -TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRYRRIEVNYENRRFRARHATFAGWTA 119

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH NGI+ 
Sbjct: 120 QIIQHEVDHCNGIII 134


>gi|184155771|ref|YP_001844111.1| peptide deformylase [Lactobacillus fermentum IFO 3956]
 gi|183227115|dbj|BAG27631.1| polypeptide deformylase [Lactobacillus fermentum IFO 3956]
          Length = 136

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           +  P+      +L++ +RP    +     L + ++  +  +    IG+AA  IG    ++
Sbjct: 1   MIYPI-NHDQQVLQQPARPATSAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + L         +  +NP+++  +  +   +EGCLS+   R+   R   ITV Y D   
Sbjct: 57  AVSLGPVN-----VAMLNPRLVKKAHPYQT-KEGCLSLTGTRS-TTRFERITVAYQDLTG 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             + +   GL A  +QHE DHL GIL 
Sbjct: 110 AQKELELTGLAAQAVQHECDHLRGILI 136


>gi|292557811|gb|ADE30812.1| Formylmethionine deformylase [Streptococcus suis GZ1]
          Length = 163

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L++ S P  +++  +   + + L        +G+AA  IGV  R++++++         +
Sbjct: 39  LQQKSEPATQLDVQVGQDLQDTLAANAHA-CVGMAANMIGVKKRIIIVNMGFTN-----L 92

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP +I+ +  +   +EGCLS+   R    R   I V + D + +   +      A  
Sbjct: 93  VMYNPVLISKAKPYQT-EEGCLSLEGTR-PTTRYQEIEVEFFDASWKKISLKLTDFQAQI 150

Query: 134 LQHELDHLNGILF 146
           +QHELDHL GI+ 
Sbjct: 151 VQHELDHLEGIII 163


>gi|13507984|ref|NP_109933.1| peptide deformylase [Mycoplasma pneumoniae M129]
 gi|2499923|sp|P75527|DEF_MYCPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1674288|gb|AAB96235.1| polypeptide deformylase [Mycoplasma pneumoniae M129]
          Length = 216

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 17/164 (10%)

Query: 16  RVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIGVLYRLVVIDL 63
             ++P++  ++   ++ I  M+  + ++            GIG+AA QIG   ++  I L
Sbjct: 43  EPTKPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHL 102

Query: 64  QDHAHRKNPMVFINPKIITFS--DDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMD-CNA 119
            D    ++  + INPKII  S    F    EGCLS+P      V R  +IT+   D    
Sbjct: 103 MD-GGVEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQ 161

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           +   I A GL   CLQHE DHL G  +   ++ L      K+  
Sbjct: 162 KEITITATGLFGMCLQHEFDHLQGRFYYHRINPLNPLFTNKEWK 205


>gi|322411580|gb|EFY02488.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 136

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +V      L++ S+   K +  I   + + L        +GLAA  IG   R+++I
Sbjct: 1   MIREIVT-DTFFLQQKSKAATKEDLWIGQALQDTLSFHRDH-CLGLAANMIGEQKRVIII 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            +         +V  NP I++  + +   +E CLS+   R   KR   ITV Y+D N + 
Sbjct: 59  SMGFVD-----LVMFNPVIVSKREAYET-EESCLSLTGSR-QTKRYTSITVEYVDLNWRP 111

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           + +   GL A   QHELDHL GIL 
Sbjct: 112 KRLRLSGLPAQICQHELDHLEGILI 136


>gi|300854809|ref|YP_003779793.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
 gi|300434924|gb|ADK14691.1| peptide deformylase [Clostridium ljungdahlii DSM 13528]
          Length = 136

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + KP+V     +L   + S    K +   M + D++++ + +   + +GLA   IGV  R
Sbjct: 1   MIKPIVK---DVLFLGQKSEEATKKD---MAVADDLMDTLRANLQNCVGLAGNMIGVRKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V  + +       +  INP I+     +   +E CLS+   R   KR   I V Y+D 
Sbjct: 55  ILVFTVGNLI-----VPMINPVILKKEKPYET-EESCLSLIGVR-KTKRYEMIEVEYLDR 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N ++Q     G  A  +QHE+DH  GI+ 
Sbjct: 108 NFKNQKQVFTGFTAQIIQHEMDHFEGIII 136


>gi|164687438|ref|ZP_02211466.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM
           16795]
 gi|164603212|gb|EDQ96677.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM
           16795]
          Length = 137

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 11/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S P    +  I   + ++++ + +     +GLAA  IG   R++V  +        
Sbjct: 12  LEQKSEPATIQDKSI---VTDLVDTLKANLDGCVGLAANMIGFKKRILVFTV----GAGM 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  INP I+     +   +E CLS+  +R    R   I V+++D N + +     G +A
Sbjct: 65  IVPMINPVILKKEKPYLT-EESCLSLEGFR-QTTRYETIEVKFLDANFKEKTQVFTGFVA 122

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH  GI+ 
Sbjct: 123 QIIQHEMDHFEGIII 137


>gi|170737315|ref|YP_001778575.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3]
 gi|169819503|gb|ACA94085.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3]
          Length = 496

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 13/156 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINS----DIMNLIDNMLEVMYSTDGIG--LAAVQIGV 54
           M  + ++      LR V+RP++ + +    +  + +   L       G G  +AA QIG+
Sbjct: 1   MNTR-ILPVGTASLRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGI 59

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
             R++ + L        P V +NP+I+  SD      + C+  PD    V+R A ++VRY
Sbjct: 60  GQRMIALALDGW-----PDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRY 114

Query: 115 MDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDH 149
              + +     A    ++  +QHE+DHL+G L  D 
Sbjct: 115 TTLDGEPHQRDALSPDVSELMQHEIDHLDGKLSFDR 150


>gi|251782236|ref|YP_002996538.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390865|dbj|BAH81324.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|323127088|gb|ADX24385.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 136

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +V      L++ S+   K +  I   + + L        +GLAA  IG   R+++I
Sbjct: 1   MIREIVT-DTFFLQQKSKAATKEDLWIGQALQDTLSFHRDH-CLGLAANMIGEQKRVIII 58

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
            +         +V  NP +++  + +   +E CLS+   R   KR   ITV Y+D N + 
Sbjct: 59  SMGFVD-----LVMFNPVMVSKKEAYET-EESCLSLTGSR-QTKRYTSITVEYVDLNWRP 111

Query: 122 QIIYADGLLATCLQHELDHLNGILF 146
           + +   GL A   QHELDHL GIL 
Sbjct: 112 KRLRLSGLPAQICQHELDHLEGILI 136


>gi|306831575|ref|ZP_07464733.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426360|gb|EFM29474.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 136

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S    K +   + L  ++ + + +   + +G+AA  IGV  R +++++        
Sbjct: 12  LAQKSEEATKED---LYLAQDLQDTLVANRDNCVGMAANMIGVKKRAIIVNMGGAD---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP ++  S  F   +E CLS+   R   +R   I V ++D N   Q +   GL A
Sbjct: 65  -LVMFNPVLLNKSLPFDT-KESCLSLTGAR-PTRRYQRIEVSFLDKNWNQQTLTLTGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GI+ 
Sbjct: 122 QICQHELDHLEGIII 136


>gi|239621599|ref|ZP_04664630.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515474|gb|EEQ55341.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 141

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 12  PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAHR 69
           P L + S   E   +D+  +  ++ + + +     +G+AA  IGV  R++    +D   R
Sbjct: 10  PFLSQPSVEAENTEADL-AVAQDLKDTLDAHRNGCVGMAANMIGVPKRIIAFVDEDLGGR 68

Query: 70  KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               V  NP I      +    EGCLS+   R  + R   I V Y D   + +     G 
Sbjct: 69  I--TVMFNPHITAQDGAYDAS-EGCLSLNGERHTL-RYQRIEVTYEDRRFRERHATFTGF 124

Query: 130 LATCLQHELDHLNGILF 146
            A  +QHE+DH +G++ 
Sbjct: 125 TAQIIQHEIDHCDGVII 141


>gi|322377869|ref|ZP_08052358.1| peptide deformylase [Streptococcus sp. M334]
 gi|321281292|gb|EFX58303.1| peptide deformylase [Streptococcus sp. M334]
          Length = 136

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 17/146 (11%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS+   + +   + L  ++ + + +     +GLAA  IGV   +++
Sbjct: 6   VKDILF-----LSQVSQSASQED---LYLARDLQDTLLANRETCVGLAANMIGVQKCVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP ++++   +   +EGCLS+   R   KR   I V Y D   Q
Sbjct: 58  FNLG-----LVPVVMFNPVLLSYEGLYET-EEGCLSLTGVR-PTKRYETIRVAYRDSKWQ 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
            Q +   G  A   QHELDHL G + 
Sbjct: 111 EQTMILTGFPAQICQHELDHLEGRII 136


>gi|209554070|ref|YP_002284901.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|209541571|gb|ACI59800.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
          Length = 198

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 18/163 (11%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P P+LR V++ I+  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAF 109
           G   R   I   D     +  + INP I   S   +     EGCLS+  D    V R   
Sbjct: 81  GWNKRATYIHFDDGNEEYH-YLLINPHITKRSSQRAYLNPGEGCLSVDHDRSGYVIRYEK 139

Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
           + V+  D  ++  I     G++A C+QHE+ HL+  L+ D+++
Sbjct: 140 VHVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNIN 182


>gi|171920852|ref|ZP_02932018.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|185178960|ref|ZP_02964717.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024017|ref|ZP_02996776.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518292|ref|ZP_03003815.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524344|ref|ZP_03004376.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867842|ref|ZP_03079842.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273805|ref|ZP_03206339.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225550531|ref|ZP_03771480.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551646|ref|ZP_03772592.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|171903056|gb|EDT49345.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209237|gb|EDU06280.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188019044|gb|EDU57084.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188998001|gb|EDU67098.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659819|gb|EDX53199.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660539|gb|EDX53796.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249560|gb|EDY74342.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225379461|gb|EEH01826.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225379685|gb|EEH02047.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 198

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P P+LR V++ I+  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIP-DYRADVKRSAF 109
           G   R   I   D  + ++  + INP I   S   +     EGCLS+  D    V R   
Sbjct: 81  GWNKRATYIHFDD-GNEEHHYLLINPHITKRSSQRAYLNPGEGCLSVDHDRSGYVIRYEK 139

Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
           + V+  D  ++  I     G++A C+QHE+ HL+  L+ D+++
Sbjct: 140 VHVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNIN 182


>gi|160914591|ref|ZP_02076805.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991]
 gi|158433131|gb|EDP11420.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991]
          Length = 139

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 9/135 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L+  S P  K +     + D++L+ + +     +G+AA  IGV   ++    ++    + 
Sbjct: 12  LQMKSLPATKED---KGIADDLLDTLKANAMQCVGMAANMIGVQKCIIAFLNKESGQYE- 67

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V +NP II  S       EGCLS+   R + KR   I V+Y D + + +I    G  A
Sbjct: 68  --VMLNPVIIKTSGIAYRVMEGCLSLAGER-EAKRYPQIKVQYYDTDMKLKIKSYKGFTA 124

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH NGIL 
Sbjct: 125 QIIQHEIDHCNGILI 139


>gi|313900498|ref|ZP_07833991.1| peptide deformylase [Clostridium sp. HGF2]
 gi|312954560|gb|EFR36235.1| peptide deformylase [Clostridium sp. HGF2]
          Length = 137

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + K +V   D  L   SR  E    D +  + ++ + +  ++   +G+AA  IGVL R++
Sbjct: 1   MIKEIVK--DTFLL--SRRCEAATLDDLQTVQDLQDTLQAHADHCVGMAANMIGVLKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V            +  +NP II   D     +EGCL     +    R   I V YMDC  
Sbjct: 57  VFQDGGSY-----VSMLNPVIIKTGDKRYTAEEGCLC-HSTQKKALRYEKIKVSYMDCCG 110

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +I   +G  A  +QHELDH +GIL 
Sbjct: 111 KKKIKTYEGFCAQIIQHELDHCDGILI 137


>gi|254456880|ref|ZP_05070308.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
 gi|207085672|gb|EDZ62956.1| formylmethionine deformylase [Campylobacterales bacterium GD 1]
          Length = 267

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 6/162 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K +  +P          +   N ++  LI ++ + +       LAA QIG    ++V+
Sbjct: 1   MVKEITKYPTKPSLEFGANVRFFNDELFALIQDLKDTIEVNSLDALAAFQIGSPLSVIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                      +  INP+++          E     P   A  KR   IT+ Y D +A  
Sbjct: 61  -----KKGGEFLELINPRVLKREGSVEPV-ETTAYFPGMSAKTKRYEKITLMYEDRDATQ 114

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + + ADG LA  LQ ++D+  G  F   L + ++ +   K+ 
Sbjct: 115 KFLEADGELAITLQRKVDYTFGSHFRFRLDKDEQKLFDSKLE 156


>gi|227889181|ref|ZP_04006986.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
 gi|227850410|gb|EEJ60496.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200]
          Length = 137

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           M  K L+I  +  L+  S P  K +   +    ++ + + +      GLAA  IGV  R+
Sbjct: 1   MAVK-LIIHDELSLKFKSLPATKQD---LGAATDLKDTLLANKYRAAGLAANMIGVQKRI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           + + +        P+V +NP I+   D +  Y EGCLS+   R   +R   ITV+Y + N
Sbjct: 57  IALFIGPL-----PIVMLNPIIVAQDDKYLAY-EGCLSLTGER-PTERYKNITVKYQNEN 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +        A  +QHE+DH NGIL 
Sbjct: 110 LETRQQSFSDFTAEVIQHEVDHCNGILI 137


>gi|253751244|ref|YP_003024385.1| peptide deformylase [Streptococcus suis SC84]
 gi|253753145|ref|YP_003026285.1| peptide deformylase [Streptococcus suis P1/7]
 gi|253754968|ref|YP_003028108.1| peptide deformylase [Streptococcus suis BM407]
 gi|251815533|emb|CAZ51115.1| peptide deformylase [Streptococcus suis SC84]
 gi|251817432|emb|CAZ55172.1| peptide deformylase [Streptococcus suis BM407]
 gi|251819390|emb|CAR44821.1| peptide deformylase [Streptococcus suis P1/7]
 gi|319757521|gb|ADV69463.1| peptide deformylase [Streptococcus suis JS14]
          Length = 136

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L++ S P  +++  +   + + L        +G+AA  IGV  R++++++         +
Sbjct: 12  LQQKSEPATQLDVQVGQDLQDTLAANAHA-CVGMAANMIGVKKRIIIVNMGFTN-----L 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP +I+ +  +   +EGCLS+   R    R   I V + D + +   +      A  
Sbjct: 66  VMYNPVLISKAKPYQT-EEGCLSLEGTR-PTTRYQEIEVEFFDASWKKISLKLTDFQAQI 123

Query: 134 LQHELDHLNGILF 146
           +QHELDHL GI+ 
Sbjct: 124 VQHELDHLEGIII 136


>gi|283768843|ref|ZP_06341754.1| peptide deformylase [Bulleidia extructa W1219]
 gi|283104629|gb|EFC06002.1| peptide deformylase [Bulleidia extructa W1219]
          Length = 188

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 21/168 (12%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +V   +PI+R  S+ ++  ++ +  +L+ +ML+ +  +              +G++A+Q+
Sbjct: 8   IVKDNNPIIRTKSKEVKLPLSEEDASLLRDMLKYVQDSTDEEKAKKYNLRPAVGISAIQV 67

Query: 53  GVLYRLVVIDLQDHAHRKNPMV----FINPKIITFS--DDFSVYQEGCLSI-PDYRADVK 105
           G+  R++ + + D     NP+       N KI++ S    +    EGCLS+  D+   V 
Sbjct: 68  GIPKRMMAVVVDDIDKNGNPIHYEYMLANAKIVSESAQPAYLSSGEGCLSVVQDHPGYVI 127

Query: 106 RSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           R A +TV   D        I A G LA  LQHELDH +G LF D + +
Sbjct: 128 RKARVTVEAYDLITDSMVSIRARGYLAIVLQHELDHFDGHLFYDRIDK 175


>gi|94994165|ref|YP_602263.1| peptide deformylase [Streptococcus pyogenes MGAS10750]
 gi|94547673|gb|ABF37719.1| Peptide deformylase [Streptococcus pyogenes MGAS10750]
          Length = 136

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + ++     +L++ ++  +K +  I     ++ + +  Y  + +G+AA  IG   R+V
Sbjct: 1   MIREIIT-DHFLLKQKAQVAKKEDLWIGQ---DLQDTLAFYRQECLGMAANMIGEQKRIV 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ +         +V  NP +++    +   +E CLS+  YR   +R   ITV Y+D N 
Sbjct: 57  IVSMGFID-----LVMFNPVMVSKKGIYQT-KESCLSLSGYR-KTQRYDKITVEYLDHNW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + + +   GL A   QHELDHL GIL 
Sbjct: 110 RPKRLNLTGLTAQICQHELDHLEGILI 136


>gi|23466247|ref|NP_696850.1| peptide deformylase [Bifidobacterium longum NCC2705]
 gi|189440729|ref|YP_001955810.1| peptide deformylase [Bifidobacterium longum DJO10A]
 gi|322689813|ref|YP_004209547.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691751|ref|YP_004221321.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326994|gb|AAN25486.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
 gi|189429164|gb|ACD99312.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
 gi|320456607|dbj|BAJ67229.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320461149|dbj|BAJ71769.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
          Length = 139

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR  S      +     +I+++++ + +     +G+AA  IGV  R++V   +D   R  
Sbjct: 12  LRTPSEAAGPGDE---QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI- 67

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V +NP I T SD     QEGCLS+   R    R   I V Y +   + +     G  A
Sbjct: 68  -TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRYRRIEVNYENRRFRARHATFAGWTA 124

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH NGI+ 
Sbjct: 125 QIIQHEVDHCNGIII 139


>gi|185179123|ref|ZP_02555609.2| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024050|ref|ZP_02569693.2| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518296|ref|ZP_02556113.2| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195867564|ref|ZP_03079567.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|225551606|ref|ZP_03772552.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184208960|gb|EDU06003.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188019083|gb|EDU57123.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188998245|gb|EDU67342.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195660808|gb|EDX54062.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|225379421|gb|EEH01786.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 198

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 18/179 (10%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAF 109
           G   R   I   D A +++  + INP II  S + +     EGCLS+ D     V R+  
Sbjct: 81  GWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKK 139

Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + V+  D  ++  I     G++A C+QHE+ HL+  L+ D++++ +        +K+ +
Sbjct: 140 VHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQQQPFYAEPSWTKIGR 198


>gi|229826625|ref|ZP_04452694.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC
           49176]
 gi|229789495|gb|EEP25609.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC
           49176]
          Length = 138

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 10/135 (7%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR  S P+ K +   M +++++ + +  Y+ + +G++A  IG+   ++ I  ++      
Sbjct: 12  LRLKSEPVTKDD---MAVVEDLKDTLKAYADECVGMSANMIGINKAVIAIQPENSDVM-- 66

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V +NPKII  S  +   +EGC+ +   R  V R   IT+ Y D + +  I    G +A
Sbjct: 67  -TVMLNPKIIKKSGAYET-EEGCMCLEGERKAV-RHRNITLEYFDEDFKKHIKLYSGYIA 123

Query: 132 TCLQHELDHLNGILF 146
             ++HE DHL GI+ 
Sbjct: 124 EIIEHECDHLEGIII 138


>gi|223932640|ref|ZP_03624640.1| formylmethionine deformylase [Streptococcus suis 89/1591]
 gi|330832215|ref|YP_004401040.1| peptide deformylase [Streptococcus suis ST3]
 gi|223898750|gb|EEF65111.1| formylmethionine deformylase [Streptococcus suis 89/1591]
 gi|329306438|gb|AEB80854.1| peptide deformylase [Streptococcus suis ST3]
          Length = 136

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L++ S P  +++  +     ++ + +   +   +G+AA  IG+  R++++++        
Sbjct: 12  LQQKSEPATQLDVQVGQ---DLQDTLSANAHACVGMAANMIGIKKRIIIVNMGFTN---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP +I+ +  +   +EGCLS+   R    R   I V ++D + +   +      A
Sbjct: 65  -LVMYNPVLISKAKPYQT-EEGCLSLEGTR-PTTRYQEIEVEFLDASWKKISLKLTDFQA 121

Query: 132 TCLQHELDHLNGILF 146
             +QHELDHL GI+ 
Sbjct: 122 QIVQHELDHLEGIII 136


>gi|256852171|ref|ZP_05557557.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661796|ref|ZP_05862707.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|282933528|ref|ZP_06338899.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|256615217|gb|EEU20408.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN]
 gi|260547543|gb|EEX23522.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN]
 gi|281302342|gb|EFA94573.1| peptide deformylase [Lactobacillus jensenii 208-1]
          Length = 136

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59
           + K ++   +  L+R S P  K +  I     ++ + + +     +G+AA  IG   R++
Sbjct: 1   MIKEIIK-DEMFLKRKSLPATKADLSIGR---DLRDTLQANKERCVGMAANMIGYSKRVI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++++         +V  NP I+   + + V  EGCLS+   R +  R   + V + D   
Sbjct: 57  IVNIGFFD-----VVMFNPVILERKNPYQVS-EGCLSLSGSR-NTLRFKEVKVAFFDEKW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q +   G  A   QHE+DHL GIL 
Sbjct: 110 EKQELTLTGFAAEICQHEMDHLEGILI 136


>gi|213691471|ref|YP_002322057.1| formylmethionine deformylase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522932|gb|ACJ51679.1| formylmethionine deformylase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457544|dbj|BAJ68165.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 139

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR  S  +     +   +I+++++ + +     +G+AA  IGV  R++V   +D   R  
Sbjct: 12  LRTPSE-VAGPGDE--QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI- 67

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             V  NP I T SD     QEGCLS+   R    R   I V Y D   + +     G  A
Sbjct: 68  -TVMFNPVI-TASDGAFDAQEGCLSLTGER-RTLRYRRIEVNYEDRRFRARHATFAGWTA 124

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH NGI+ 
Sbjct: 125 QIIQHEVDHCNGIII 139


>gi|325679773|ref|ZP_08159347.1| peptide deformylase [Ruminococcus albus 8]
 gi|324108588|gb|EGC02830.1| peptide deformylase [Ruminococcus albus 8]
          Length = 136

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + K +V   D I L++ S    K ++  M +I ++ + + +     +G+AA  IG   R+
Sbjct: 1   MVKEIVK--DIIFLKKKSV---KADTKDMQIITDLQDTLKANHDRCVGMAANMIGYSKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++            +V INP I+  +  +   +EGCLS+   R   KR   ITV Y+D +
Sbjct: 56  IIFTAGIMD-----IVMINPVIVKKARPYET-EEGCLSLTGVR-KTKRWEMITVEYLDTS 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            + +     G +A  +QHE DHL+GI+ 
Sbjct: 109 FKKKRGDFTGFVAQIIQHECDHLDGIII 136


>gi|288905492|ref|YP_003430714.1| polypeptide deformylase [Streptococcus gallolyticus UCN34]
 gi|288732218|emb|CBI13783.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34]
          Length = 136

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S    K +   + L  ++ + + +   + +G+AA  IGV  R++++++        
Sbjct: 12  LAQKSEEATKED---LYLAQDLQDTLVANRDNCVGMAANMIGVKKRVIIVNMGVAD---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP ++  S  F   +E CLS+   R   +R   I V ++D N   Q +   GL A
Sbjct: 65  -LVMFNPVLLNKSLPFDT-KESCLSLTGAR-PTRRYQKIEVSFLDKNWNQQTLTLTGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GI+ 
Sbjct: 122 QICQHELDHLEGIII 136


>gi|169350971|ref|ZP_02867909.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552]
 gi|169292033|gb|EDS74166.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552]
          Length = 136

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 15/147 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + K +V   D + L + S    K +   + +++++L+ + +     +G+AA  IG   ++
Sbjct: 1   MIKKIVK--DKLFLSQKSSLASKED---LYIVEDLLDTIKANKDKCVGMAANMIGYNKQI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VI+  D       +V INP I   +  +    EGCL        + R   ITV Y+D N
Sbjct: 56  IVIENND-----EYLVMINPSITKTTGKYET-NEGCLCHETLMPAL-RYHKITVEYLDLN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGIL 145
            + +        A  +QHE+DH NGIL
Sbjct: 109 FKKKTRTFKDYSAQIIQHEIDHCNGIL 135


>gi|228477893|ref|ZP_04062507.1| polypeptide deformylase [Streptococcus salivarius SK126]
 gi|228250383|gb|EEK09623.1| polypeptide deformylase [Streptococcus salivarius SK126]
          Length = 136

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L + S    K +  +   + + LE       +G+AA  IGV  R++++++         +
Sbjct: 12  LGQKSTEATKEDLYLAKDLRDTLEFHKDA-CLGMAANMIGVKKRVIIVNIGFVN-----L 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP +++ S  F   +E CLS+   R   KR   I V Y+D     + +   G+ A  
Sbjct: 66  VMFNPILVSKSSPFQT-EESCLSLEGSR-PTKRYESIEVAYLDEQWMPKQLSFSGMPAQI 123

Query: 134 LQHELDHLNGILF 146
           +QHELDHL GI+ 
Sbjct: 124 IQHELDHLEGIII 136


>gi|313678726|ref|YP_004056466.1| peptide deformylase [Mycoplasma bovis PG45]
 gi|312950135|gb|ADR24730.1| peptide deformylase [Mycoplasma bovis PG45]
          Length = 186

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 20/168 (11%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVL 55
            LV  P  +LR+ S  +   ++++ + L + M+  +  +         G+G+AAVQ GVL
Sbjct: 7   ELVKLPKKVLRQKSVNVPIPLSNEDIELAEKMIYHIDDSQKEGSKFQAGVGVAAVQYGVL 66

Query: 56  YRLVVIDLQDHAHRKNPM----VFINPKIITFSDDFSVY--QEGCLS----IPDYRADVK 105
            R+  I++ +            VF NP +I  S+        EGCLS    I +    V 
Sbjct: 67  KRVFYINVTEDMVDDKKYALRDVFFNPVVIAKSESKIALSQGEGCLSVGRNIKNQSGAVY 126

Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSR 152
           R   I +       +    Y      A   QHELDHL+G LFID +  
Sbjct: 127 RHKRIVIEAYSYFEKKVKRYDLKDYPAIVAQHELDHLDGKLFIDRIDP 174


>gi|94988363|ref|YP_596464.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94992245|ref|YP_600344.1| peptide deformylase [Streptococcus pyogenes MGAS2096]
 gi|94541871|gb|ABF31920.1| peptide deformylase [Streptococcus pyogenes MGAS9429]
 gi|94545753|gb|ABF35800.1| Peptide deformylase [Streptococcus pyogenes MGAS2096]
          Length = 136

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + ++     +L++ ++  +K +  I     ++ + +  Y  + +G+AA  IG   R+V
Sbjct: 1   MIREIIT-DHFLLQQKAQVAKKEDLWIGQ---DLQDTLAFYRQECLGMAANMIGEQKRIV 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ +         +V  NP +++    +   +E CLS+  YR   +R   ITV Y+D N 
Sbjct: 57  IVSMGFID-----LVMFNPVMVSKKGIYQT-KESCLSLSGYR-KTQRYDKITVEYLDHNW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + + +   GL A   QHELDHL GIL 
Sbjct: 110 RPKRLNLTGLTAQICQHELDHLEGILI 136


>gi|56808912|ref|ZP_00366621.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes
           M49 591]
 gi|209559224|ref|YP_002285696.1| peptide deformylase [Streptococcus pyogenes NZ131]
 gi|209540425|gb|ACI61001.1| Peptide deformylase [Streptococcus pyogenes NZ131]
          Length = 136

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + ++     +L++ ++  +K +  I     ++ + +  Y  +  G+AA  IG   R+V
Sbjct: 1   MIREIIT-DHFLLQQKAQVAKKEDLWIGQ---DLQDTLAFYRQECFGMAANMIGEQKRIV 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ +         +V  NP +++    +   +E CLS+  YR   +R   ITV Y+D N 
Sbjct: 57  IVSMGFID-----LVMFNPVMVSKKGIYQT-KESCLSLSGYR-KTQRYDKITVEYLDHNW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + + +   GL A   QHELDHL GIL 
Sbjct: 110 RPKRLSLTGLTAQICQHELDHLEGILI 136


>gi|15674896|ref|NP_269070.1| peptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21910126|ref|NP_664394.1| peptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28896175|ref|NP_802525.1| peptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50914040|ref|YP_060012.1| peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71903322|ref|YP_280125.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71910490|ref|YP_282040.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94990244|ref|YP_598344.1| peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|139473964|ref|YP_001128680.1| peptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|306827532|ref|ZP_07460815.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
 gi|13622035|gb|AAK33791.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS]
 gi|21904318|gb|AAM79197.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315]
 gi|28811426|dbj|BAC64358.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1]
 gi|50903114|gb|AAT86829.1| Peptide deformylase [Streptococcus pyogenes MGAS10394]
 gi|71802417|gb|AAX71770.1| peptide deformylase [Streptococcus pyogenes MGAS6180]
 gi|71853272|gb|AAZ51295.1| peptide deformylase [Streptococcus pyogenes MGAS5005]
 gi|94543752|gb|ABF33800.1| Peptide deformylase [Streptococcus pyogenes MGAS10270]
 gi|134272211|emb|CAM30457.1| peptide deformylase [Streptococcus pyogenes str. Manfredo]
 gi|304430330|gb|EFM33356.1| peptide deformylase [Streptococcus pyogenes ATCC 10782]
          Length = 136

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + ++     +L++ ++  +K +  I     ++ + +  Y  + +G+AA  IG   R+V
Sbjct: 1   MIREIIT-DHFLLQQKAQVAKKEDLWIGQ---DLQDTLAFYRQECLGMAANMIGEQKRIV 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ +         +V  NP +++    +   +E CLS+  YR   +R   ITV Y+D N 
Sbjct: 57  IVSMGFID-----LVMFNPVMVSKKGIYQT-KESCLSLSGYR-KTQRYDKITVEYLDHNW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + + +   GL A   QHELDHL GIL 
Sbjct: 110 RPKRLSLTGLTAQICQHELDHLEGILI 136


>gi|153206215|ref|ZP_01945478.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177']
 gi|165919286|ref|ZP_02219372.1| peptide deformylase [Coxiella burnetii RSA 334]
 gi|120577345|gb|EAX33969.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177']
 gi|165917009|gb|EDR35613.1| peptide deformylase [Coxiella burnetii RSA 334]
          Length = 209

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 13/152 (8%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI-----DLQD 65
           +L +V+  +E  +       I+ M     S  G  G AA Q+G+  R++++     D   
Sbjct: 13  VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH---- 121
                 P + +NP     SD      EGCLS+P     V+R   + +     ++      
Sbjct: 73  AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132

Query: 122 --QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +  Y     +   QHE+DHL G +++D   
Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164


>gi|307299459|ref|ZP_07579259.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914858|gb|EFN45245.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 183

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-----IMNLIDNMLEVMYSTD-GIGLAAVQIGV 54
           M+   +++  +P+LR  S P+    S      I+ L   + E       G G++A QIG+
Sbjct: 1   MMTCEVLLLGNPLLRETSSPVSDFRSQETIGQIVMLKQALDEFRKENGFGRGISAPQIGI 60

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           L R+V ++L      +   V  NP+I+  S       + C+S P     ++RS  + V Y
Sbjct: 61  LKRIVALNLG-----QGSFVIANPRIVDRSRATFTMWDDCMSFPHLLIRLERSLSVDVVY 115

Query: 115 MDCNAQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            D           D   +  LQHE+DHL+GIL IDH    K  +   +  +
Sbjct: 116 EDERGIEYEWKGVDQARSELLQHEIDHLDGILAIDHALDAKSIIYRSEYER 166


>gi|19745939|ref|NP_607075.1| peptide deformylase [Streptococcus pyogenes MGAS8232]
 gi|19748096|gb|AAL97574.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232]
          Length = 136

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + ++     +L++ ++  +K +  I     ++ + +  Y  + +G+AA  IG   R+V
Sbjct: 1   MIREIIT-DHFLLQQKAQVAKKEDLWIGQ---DLQDTLVFYRQECLGMAANMIGEQKRIV 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ +         +V  NP +++    +   +E CLS+  YR   +R   ITV Y+D N 
Sbjct: 57  IVSMGFID-----LVMFNPVMVSKKGIYQT-KESCLSLSGYR-KTQRYDKITVEYLDHNW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + + +   GL A   QHELDHL GIL 
Sbjct: 110 RPKRLSLTGLTAQICQHELDHLEGILI 136


>gi|297205664|ref|ZP_06923060.1| peptide deformylase [Lactobacillus jensenii JV-V16]
 gi|297150242|gb|EFH30539.1| peptide deformylase [Lactobacillus jensenii JV-V16]
          Length = 136

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59
           + K ++   +  L+R S P  K +  I     ++ + + +     +G+AA  IG   R++
Sbjct: 1   MIKEIIK-DEMFLKRKSLPATKADLSIGR---DLRDTLQANKERCVGMAANMIGYSKRVI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++++         +V  NP I+   + + V  EGCLS+   R +  R   + V + D   
Sbjct: 57  IVNIGFFD-----VVMFNPVILERKNPYQVS-EGCLSLSGSR-NTLRFKEVKVAFFDEKW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           ++Q +   G  A   QHE+DHL GIL 
Sbjct: 110 ENQELTLTGFAAEICQHEMDHLEGILI 136


>gi|309775748|ref|ZP_07670744.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916511|gb|EFP62255.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 184

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 18/165 (10%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51
            +V   D I+R  S  ++  + ++   L+ +ML  +  +              +G+AA+Q
Sbjct: 7   DIVKDTDAIVRTKSEVVKLPLTAEDEALLMDMLSYVRDSQDAELAEANNLRPAVGIAAIQ 66

Query: 52  IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSI-PDYRADVKRSA 108
           +GV  R++ + +  +    +    +NP+II+ S    +    EGCLS+  ++   V R+A
Sbjct: 67  LGVAKRMLAVVVP-NDEDIDEYALVNPRIISESVQRAYLKNGEGCLSVEKEHEGIVPRAA 125

Query: 109 FITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
            ITV+  D    Q   I A   LA  LQHE+DH +G LF D +++
Sbjct: 126 RITVKGYDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170


>gi|88606748|ref|YP_505874.1| peptide deformylase, truncation [Anaplasma phagocytophilum HZ]
 gi|88597811|gb|ABD43281.1| peptide deformylase, truncated [Anaplasma phagocytophilum HZ]
          Length = 91

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 58/85 (68%)

Query: 84  SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143
           S D    +EGCLS+P+ R  V R   + ++Y D + + +I+ A GLL+ CLQHE+DHLNG
Sbjct: 4   SFDLVSMEEGCLSVPNQRELVVRPERVVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNG 63

Query: 144 ILFIDHLSRLKRDMITKKMSKLVQL 168
            +FI H+S+LKRD++ +KM K   L
Sbjct: 64  TVFIKHISKLKRDLVMQKMRKAASL 88


>gi|239621615|ref|ZP_04664646.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515490|gb|EEQ55357.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 128

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 9/134 (6%)

Query: 15  RRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           R  S      +     +I+++++ + +     +G+AA  IGV  R++V   +D   R   
Sbjct: 2   RTPSEAAGPGDE---QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI-- 56

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            V +NP I T SD     QEGCLS+   R    R   I V Y D   + +     G  A 
Sbjct: 57  TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRYRRIEVNYEDRRFRARHATFTGWTAQ 114

Query: 133 CLQHELDHLNGILF 146
            +QHE+DH NGI+ 
Sbjct: 115 IIQHEVDHCNGIII 128


>gi|304385668|ref|ZP_07368012.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
 gi|304328172|gb|EFL95394.1| peptide deformylase [Pediococcus acidilactici DSM 20284]
          Length = 136

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 10/134 (7%)

Query: 14  LRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           L + S P  + +    ++L+D +     +   +GLAA  IGV  +++ + +         
Sbjct: 12  LSQKSVPATRADLPTALDLVDTLAA--NADRAVGLAANMIGVKKQIIAVSIGVMN----- 64

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +  +NPK+   S  +   +EGCLS+   R+   R   I V+Y D N + Q  +  G +A 
Sbjct: 65  IAMLNPKLTKKSHPYQA-KEGCLSLTGERS-TTRYKEIEVQYQDLNFKKQTQHFSGWIAE 122

Query: 133 CLQHELDHLNGILF 146
            +QHE+DH  GIL 
Sbjct: 123 IIQHEIDHCAGILI 136


>gi|325978482|ref|YP_004288198.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|325178410|emb|CBZ48454.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 136

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S    K +   + L  ++ + + +   + +G+AA  IGV  R +++++        
Sbjct: 12  LAQKSEEATKED---LYLAQDLQDTLVANRDNCVGMAANMIGVKKRAIIVNMGVAD---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP ++  S  F   +E CLS+   R   +R   I V ++D N   Q +   GL A
Sbjct: 65  -LVMFNPVLLNKSLPFDT-KESCLSLTGAR-PTRRYQRIEVSFLDKNWNQQTLTLTGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GI+ 
Sbjct: 122 QICQHELDHLEGIII 136


>gi|209363680|ref|YP_001423542.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|212217854|ref|YP_002304641.1| peptide deformylase [Coxiella burnetii CbuK_Q154]
 gi|207081613|gb|ABS76532.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111]
 gi|212012116|gb|ACJ19496.1| peptide deformylase [Coxiella burnetii CbuK_Q154]
          Length = 213

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 13/152 (8%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI-----DLQD 65
           +L +V+  +E  +       I+ M     S  G  G AA Q+G+  R++++     D   
Sbjct: 17  VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 76

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH---- 121
                 P + +NP     SD      EGCLS+P     V+R   + +     ++      
Sbjct: 77  AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 136

Query: 122 --QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +  Y     +   QHE+DHL G +++D   
Sbjct: 137 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 168


>gi|209554459|ref|YP_002284908.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|209541960|gb|ACI60189.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
          Length = 198

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 18/163 (11%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAF 109
           G   R   I   D A +++  + INP II  S + +     EGCLS+ D     V R+  
Sbjct: 81  GWNKRATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKK 139

Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151
           + V+  D  ++  I     G++A C+QHE+ HL+  L+ D+++
Sbjct: 140 VHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182


>gi|116335077|ref|YP_802572.1| peptide deformylase [Candidatus Carsonella ruddii PV]
 gi|116235358|dbj|BAF35206.1| peptide deformylase [Candidatus Carsonella ruddii PV]
          Length = 154

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 84/145 (57%), Gaps = 3/145 (2%)

Query: 6   LVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           ++ F D  +R   + ++   N +I+ +I  M+ +MY  +GIG+++ QI     +++ D+ 
Sbjct: 4   ILNFKDKRIRLFFKNVKVSFNYNILYIIKQMIILMYKNNGIGISSNQINCFKNIIICDVN 63

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
               +K P++ INPKI+  + + ++  EGCLSI ++   V R   + ++Y +   + +  
Sbjct: 64  --FKKKKPLIMINPKILINNKNHTLGMEGCLSIKNFLISVLRFDKVYIKYFNIYNKKKKK 121

Query: 125 YADGLLATCLQHELDHLNGILFIDH 149
             +G+ + C+QHE+DHLN  L +D+
Sbjct: 122 IFNGIKSRCIQHEIDHLNSKLILDY 146


>gi|322517336|ref|ZP_08070211.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
 gi|322124033|gb|EFX95586.1| peptide deformylase [Streptococcus vestibularis ATCC 49124]
          Length = 136

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L + S    K +  +   + + LE       +G+AA  IGV  R++++++         +
Sbjct: 12  LGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVIIVNIGFVN-----L 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP +++ S  F   +E CLS+   R   +R   I V Y+D     + +   G+ A  
Sbjct: 66  VMFNPVLVSKSSPFQT-EESCLSLEGSR-PTRRYESIEVAYLDEQWMLKQLNFSGMPAQI 123

Query: 134 LQHELDHLNGILF 146
           +QHELDHL GI+ 
Sbjct: 124 IQHELDHLEGIII 136


>gi|119025798|ref|YP_909643.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703]
 gi|118765382|dbj|BAF39561.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703]
          Length = 106

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            R    ++            +NP +   S +     EGCLS+P      +R+ +  VR +
Sbjct: 1   MRAFSYNIDGKIGY-----VLNPVLEEASGE-QYGDEGCLSVPGLWYKTRRADYARVRGI 54

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D + +  ++   G++   LQHE DHL+G +++D L + +R    + M    +
Sbjct: 55  DLDGKPVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRTHRK 106


>gi|315931997|gb|EFV10950.1| polypeptide deformylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 102

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +  INP+II   ++     EGCLS+PD+  +VKR   I ++Y D   + + + A G LA 
Sbjct: 2   LEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRFGEFKELEAKGFLAV 61

Query: 133 CLQHELDHLNGILFIDHLSRLKRD 156
            +QHE DHLNG LFI+ +S  KR 
Sbjct: 62  AIQHENDHLNGHLFIEKISFAKRQ 85


>gi|161830302|ref|YP_001597698.1| peptide deformylase [Coxiella burnetii RSA 331]
 gi|161762169|gb|ABX77811.1| peptide deformylase [Coxiella burnetii RSA 331]
          Length = 209

 Score =  105 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 13/152 (8%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI-----DLQD 65
           +L +V+  +E  +       I+ M     S  G  G AA Q+G+  R++++     D   
Sbjct: 13  VLYKVASEVEIPLTKTTKEKIEAMRIFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH---- 121
                 P + +NP     SD      EGCLS+P     V+R   + +     ++      
Sbjct: 73  AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132

Query: 122 --QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +  Y     +   QHE+DHL G +++D   
Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164


>gi|195978210|ref|YP_002123454.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974915|gb|ACG62441.1| peptide deformylase Def [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 136

 Score =  105 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L++ ++P  K +  I     ++ + +  Y    +GLAA  IG   R++++ +        
Sbjct: 12  LQQKAQPATKKDLWIGQ---DLQDTLAYYRDSCLGLAANMIGENKRVIIVSMGFVD---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP +      F   +E CLS+   R   KR   I V Y+D +   + +   GL A
Sbjct: 65  -LVMFNPVLTAKRGAFEA-EESCLSLTGQR-RTKRYQEIKVDYLDTHWHKKSLRLTGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GIL 
Sbjct: 122 QICQHELDHLEGILI 136


>gi|229818453|ref|ZP_04448734.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM
           20098]
 gi|229784323|gb|EEP20437.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM
           20098]
          Length = 141

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLV 59
           +++P+     P+L + S       +D+  +  ++ + + +     +G+AA  IG   R++
Sbjct: 1   MQRPITTSI-PLLSQPSEEAHSTEADL-AVAQDLKDTLDAHRNGCVGMAANMIGEHKRII 58

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
               ++   R    +  NP+I      +    EGCLS+   R    R   I V YMD   
Sbjct: 59  AFVDEELGGRI--TLMFNPRITAQDGAYDTA-EGCLSLNGER-RTLRYQRIEVDYMDRRW 114

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + +     G  A  +QHE+DH +G++ 
Sbjct: 115 RERHATFTGFTAQIIQHEIDHCDGVII 141


>gi|222152925|ref|YP_002562102.1| peptide deformylase [Streptococcus uberis 0140J]
 gi|222113738|emb|CAR41729.1| peptide deformylase [Streptococcus uberis 0140J]
          Length = 136

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRL 58
           + + +V   DP+ L++ S    K +  I     ++L+ +  +  + +G+AA  IG   R+
Sbjct: 1   MIRDIVK--DPLFLQQKSALATKEDIKIGT---DLLDTLAYHRENCLGMAANMIGESKRI 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++I +         +V  NP II+  D F   +E CLS+   R    R   I V Y+D +
Sbjct: 56  IIISMGFVD-----LVMFNPMIISKKDSFHA-EESCLSLSGSR-KTTRYKEIKVDYLDHH 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              + +   GL A   QHELDHL GIL 
Sbjct: 109 WMKKSLTLTGLPAQVCQHELDHLEGILI 136


>gi|225550917|ref|ZP_03771866.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225380071|gb|EEH02433.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 198

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 18/179 (10%)

Query: 6   LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52
           +   P PILR V++ IE  +++ D +  +  M   ++V Y           GI +AA Q+
Sbjct: 21  IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80

Query: 53  GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPD-YRADVKRSAF 109
           G       I   D A +++  + INP II  S + +     EGCLS+ D     V R+  
Sbjct: 81  GWNKCATYIHFNDEA-KEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKK 139

Query: 110 ITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + V+  D  ++  I     G++A C+QHE+ HL+  L+ D++++ +        +K+ +
Sbjct: 140 VHVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQQQPFYAEPSWTKIGR 198


>gi|116627328|ref|YP_819947.1| peptide deformylase [Streptococcus thermophilus LMD-9]
 gi|116100605|gb|ABJ65751.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus
           LMD-9]
 gi|312277834|gb|ADQ62491.1| Peptide deformylase [Streptococcus thermophilus ND03]
          Length = 136

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L + S    K +  +   + + LE       +G+AA  IGV  R++++++         +
Sbjct: 12  LGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVIIVNIGFVN-----L 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP +++ S  F   +E CLS+   R   +R   I V Y+D     + +   G+ +  
Sbjct: 66  VMFNPVLVSKSSSFQT-EESCLSLEGSR-PTRRYESIEVAYLDERWMPKQLSFSGMPSQI 123

Query: 134 LQHELDHLNGILF 146
           +QHELDHL G++ 
Sbjct: 124 IQHELDHLEGVII 136


>gi|270290078|ref|ZP_06196304.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
 gi|270281615|gb|EFA27447.1| polypeptide deformylase [Pediococcus acidilactici 7_4]
          Length = 136

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 10/134 (7%)

Query: 14  LRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           L + S P  + +    ++L+D +     +   +GLAA  IGV  +++ + +         
Sbjct: 12  LSQKSVPATRADLPTALDLVDTLAA--NADRAVGLAANMIGVKKQIIAVSIGVMN----- 64

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +  +NPK+   S  +   +EGCLS+   R+   R   I V+Y D N + Q  +  G +A 
Sbjct: 65  IAMLNPKLTKKSHPYQA-KEGCLSLAGERS-TTRYKEIEVQYQDLNFKKQTQHFSGWIAE 122

Query: 133 CLQHELDHLNGILF 146
            +QHE+DH  G+L 
Sbjct: 123 IIQHEIDHCAGVLI 136


>gi|163816477|ref|ZP_02207841.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759]
 gi|158448177|gb|EDP25172.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759]
          Length = 136

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLV 59
           + K +V      L + S P+  +++ I   I +M + + +     +G+A   IG   R++
Sbjct: 1   MVKQIVR-DQMFLSQKSSPMTPMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ +         +V +NP +++ S  +   +EGCLS+   R  V R   I V + D + 
Sbjct: 57  IVSMGFAN-----VVMLNPVLLSKSGAYET-EEGCLSLDGTR-KVTRYRDIEVEFQDASF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             + +  +G +A  + HE+DHL G + 
Sbjct: 110 AKKRMKFNGYIAQIVLHEMDHLEGRII 136


>gi|225870619|ref|YP_002746566.1| peptide deformylase [Streptococcus equi subsp. equi 4047]
 gi|225700023|emb|CAW94040.1| peptide deformylase [Streptococcus equi subsp. equi 4047]
          Length = 136

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L++ ++P  K +  I     ++ + +  Y    +GLAA  IG   R+++I +        
Sbjct: 12  LQQKAQPATKKDLWIGQ---DLQDTLAYYRDSCLGLAANMIGENKRVIIISMGFVD---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP +I   + F   +E CLS+   R   KR   I V Y+D +   + +   GL A
Sbjct: 65  -LVMFNPVLIAKREAFEA-EESCLSLIGQR-KTKRYQEIKVDYLDAHWHKKSLRLTGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GIL 
Sbjct: 122 QICQHELDHLEGILI 136


>gi|223984418|ref|ZP_03634556.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM
           12042]
 gi|223963613|gb|EEF67987.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM
           12042]
          Length = 185

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 21/168 (12%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52
           +V   D  LR  S P+   ++    N +  +L  +  +              +G+AA+QI
Sbjct: 4   IVKDSDAHLRDKSAPVSLPLSEADKNTLMELLTYVRESTDPELAEAKNLRPAVGIAAIQI 63

Query: 53  GVLYRLVVIDLQDHAHRKNPMV----FINPKIITFSDD--FSVYQEGCLS-IPDYRADVK 105
           G+  +L+ + + +     NP+       N KI++ S    +    EGCLS + D+   V 
Sbjct: 64  GIPKQLLAVVVDEEDKNGNPIHYEYALANAKIVSQSVQNAYLKTGEGCLSVLDDHPGYVI 123

Query: 106 RSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           RSA I V+  D    +     A G +A  LQHE+DH +GILF D ++ 
Sbjct: 124 RSARIKVKGYDMLQDREVTFRASGYVAIVLQHEIDHFSGILFYDRINP 171


>gi|319776853|ref|YP_004136504.1| peptide deformylase [Mycoplasma fermentans M64]
 gi|318037928|gb|ADV34127.1| Peptide deformylase [Mycoplasma fermentans M64]
          Length = 189

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 22/176 (12%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIGV 54
           LV  P+ ILR+ S+ ++  ++ +   L   M+  +  +           G+G+AA+Q G+
Sbjct: 7   LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 66

Query: 55  LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLS----IPDYRADV 104
             R+  I++ +       +     V INPK++  S+ + S+  EGCLS    I +    V
Sbjct: 67  PKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGYV 126

Query: 105 KRSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            R   I +       +    Y      A   QHE DHL G LFID +++    +I 
Sbjct: 127 YRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINKKDPFVIK 182


>gi|46190479|ref|ZP_00206479.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum
           DJO10A]
          Length = 128

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 9/134 (6%)

Query: 15  RRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72
           R  S      +     +I+++++ + +     +G+AA  IGV  R++V   +D   R   
Sbjct: 2   RTPSEAAGPGDE---QVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVDEDLGGRI-- 56

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            V +NP I T SD     QEGCLS+   R    R   I V Y +   + +     G  A 
Sbjct: 57  TVMLNPVI-TASDGAFDTQEGCLSLTGER-RTLRYRRIEVNYENRRFRARHATFAGWTAQ 114

Query: 133 CLQHELDHLNGILF 146
            +QHE+DH NGI+ 
Sbjct: 115 IIQHEVDHCNGIII 128


>gi|295425019|ref|ZP_06817727.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
 gi|295065294|gb|EFG56194.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664]
          Length = 137

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 13/148 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           M  + + I     L+R S+P  K +   +N+  ++ + + +     +GLAA  IG   R+
Sbjct: 1   MAAQNI-IHDQMFLQRKSQPATKAD---LNIAIDLRDTLIAKRNLALGLAANMIGKDKRI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +   +   A     MV INP+II   + +   +EGCLS+   R+  KR   I V +   N
Sbjct: 57  IAFYVGPLA-----MVMINPRIIDKEERYIT-KEGCLSLSGERS-TKRYKKIRVSFQTMN 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +++    DGL +  +QHE+DH +GIL 
Sbjct: 110 FENRTQEFDGLTSEVIQHEIDHCDGILI 137


>gi|225868458|ref|YP_002744406.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus]
 gi|225701734|emb|CAW99099.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus]
          Length = 136

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L++ ++P  K +  I     ++ + +  Y    +GLAA  IG   R++++ +        
Sbjct: 12  LQQKAQPATKKDLWIGQ---DLQDTLAYYRDSCLGLAANMIGENKRVIIVSMGFVD---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP +    + F   +E CLS+   R    R   I V Y+D +   + +   GL A
Sbjct: 65  -LVMFNPVLTAKREAFEA-EESCLSLTGQR-RTTRYQEIKVDYLDTHWHKKSLRLTGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL GIL 
Sbjct: 122 QICQHELDHLEGILI 136


>gi|55820518|ref|YP_138960.1| peptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55822406|ref|YP_140847.1| peptide deformylase [Streptococcus thermophilus CNRZ1066]
 gi|55736503|gb|AAV60145.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311]
 gi|55738391|gb|AAV62032.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066]
          Length = 136

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S    K +   + L  ++ + +  +    +G+AA  IGV  R++++++        
Sbjct: 12  LGQKSTEATKED---LYLAKDLRDTLEFHKDTCVGMAANMIGVKKRVIIVNIGFVN---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP +++ S  F   +E CLS+   R   +R   I V Y+D     + +   G+ +
Sbjct: 65  -LVMFNPVLVSKSSSFQT-EESCLSLEGSR-PTRRYESIEVAYLDERWMPKQLSFSGMPS 121

Query: 132 TCLQHELDHLNGILF 146
             +QHELDHL G++ 
Sbjct: 122 QIIQHELDHLEGVII 136


>gi|295094704|emb|CBK83795.1| N-formylmethionyl-tRNA deformylase [Coprococcus sp. ART55/1]
          Length = 136

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLV 59
           + K +V      L + S P+  +++ I   I +M + + +     +G+A   IG   R++
Sbjct: 1   MVKQIVR-DQMFLSQKSSPMTTMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++ +         +V +NP +++ S  +   +EGCLS+   R  V R   I V + D + 
Sbjct: 57  IVSMGFAN-----VVMLNPVLLSKSGAYET-EEGCLSLDGTR-KVTRYRDIEVEFQDASF 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             + +  +G +A  + HE+DHL G + 
Sbjct: 110 AKKRMKFNGYIAQIVLHEMDHLEGRII 136


>gi|238809638|dbj|BAH69428.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 195

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 22/176 (12%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIGV 54
           LV  P+ ILR+ S+ ++  ++ +   L   M+  +  +           G+G+AA+Q G+
Sbjct: 13  LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 72

Query: 55  LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLS----IPDYRADV 104
             R+  I++ +       +     V INPK++  S+ + S+  EGCLS    I +    V
Sbjct: 73  PKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGYV 132

Query: 105 KRSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            R   I +       +    Y      A   QHE DHL G LFID +++    +I 
Sbjct: 133 YRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINKKDPFVIK 188


>gi|326511637|dbj|BAJ91963.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326514272|dbj|BAJ92286.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 121

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 44/79 (55%)

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V INPK+   S   + + EGCLS+  YRA V+R   + V  +D N +   + A G  A  
Sbjct: 20  VVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLDVEVSGLDRNGRPMKVEASGWQARI 79

Query: 134 LQHELDHLNGILFIDHLSR 152
           LQHE DHL G L++D +  
Sbjct: 80  LQHECDHLEGTLYVDKMVP 98


>gi|312864304|ref|ZP_07724538.1| peptide deformylase [Streptococcus vestibularis F0396]
 gi|311100305|gb|EFQ58514.1| peptide deformylase [Streptococcus vestibularis F0396]
          Length = 136

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73
           L + S    K +  +   + + LE       +G+AA  IGV  R++++++         +
Sbjct: 12  LGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVIIVNIGFVN-----L 65

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V  NP +++ S  F   +E CLS+   R   +R   I V Y+D     + +   G+ A  
Sbjct: 66  VMFNPVLVSKSSLFQT-EESCLSLEGSR-PTRRYESIEVAYLDEQWMLKQLNFSGMPAQI 123

Query: 134 LQHELDHLNGILF 146
           +QHELDHL GI+ 
Sbjct: 124 IQHELDHLEGIII 136


>gi|212211904|ref|YP_002302840.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
 gi|212010314|gb|ACJ17695.1| peptide deformylase [Coxiella burnetii CbuG_Q212]
          Length = 213

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 13/152 (8%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI-----DLQD 65
           +L +V+  +E  +       I+ M     S  G  G AA Q+G+  R++++     D   
Sbjct: 17  VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 76

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH---- 121
                 P + +NP     SD      EGCLS+P     V+R   + +     ++      
Sbjct: 77  AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHMELTAWLYHSDTEALS 136

Query: 122 --QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +  Y     +   QHE+DHL G +++D   
Sbjct: 137 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 168


>gi|295099860|emb|CBK88949.1| N-formylmethionyl-tRNA deformylase [Eubacterium cylindroides T2-87]
          Length = 136

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 9/124 (7%)

Query: 25  NSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT 82
           N D +++  ++++ + +      G+AA  IG   R++    +        +V +NP+II 
Sbjct: 20  NKDDLSIAQDLIDTLEAHKVSCAGMAANMIGFHKRIIAFQDEGKI-----VVMLNPEIIK 74

Query: 83  FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            S  +S  +EGCLS+   R + KR   I VRY+D   + +I       A  +QHE+DH +
Sbjct: 75  KSQIYSA-KEGCLSLSGQR-ETKRYRSIKVRYLDMQMKIKIKTFKDFTAQVIQHEIDHCD 132

Query: 143 GILF 146
           GIL 
Sbjct: 133 GILI 136


>gi|58336410|ref|YP_192995.1| peptide deformylase [Lactobacillus acidophilus NCFM]
 gi|58253727|gb|AAV41964.1| polypeptide deformylase [Lactobacillus acidophilus NCFM]
          Length = 137

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 13/148 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           M  K + I     L + S      N+  M +  ++ + + +      GLAA  IG   R+
Sbjct: 1   MAVKNI-IHDQLFLMQKS---TLANAKDMQVAVDLRDTLLANRNKAAGLAANMIGEAKRI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +   +        PMV  NPKII   +++    EGCLS+   R  VKR   ITV+Y + N
Sbjct: 57  IAFYI-----VGMPMVMFNPKIIQKGNEYLAT-EGCLSLNGER-PVKRYEHITVKYQNIN 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +++     G +A  +QHE+DH +G + 
Sbjct: 110 LEYETQEFSGFVAETIQHEIDHCDGKII 137


>gi|308189670|ref|YP_003922601.1| peptide deformylase [Mycoplasma fermentans JER]
 gi|307624412|gb|ADN68717.1| peptide deformylase [Mycoplasma fermentans JER]
          Length = 189

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 22/176 (12%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIGV 54
           LV  P+ ILR+ S+ ++  ++ +   L   M+  +  +           G+G+AA+Q G+
Sbjct: 7   LVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYGI 66

Query: 55  LYRLVVIDLQDHAHRKNPM-----VFINPKIITFSD-DFSVYQEGCLS----IPDYRADV 104
             R+  I++ +       +     V INPK++  S+ + S+  EGCLS    I +    V
Sbjct: 67  PKRMFYININNETINGAKIEDFRDVLINPKVLAISEYEVSLPGEGCLSVGDNIKNQEGYV 126

Query: 105 KRSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            R   I +       +    Y      A   QHE DHL G LFID +++    +I 
Sbjct: 127 YRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINKKDPFVIK 182


>gi|148972164|ref|ZP_01811404.1| peptide deformylase [Leptolyngbya valderiana BDU 20041]
 gi|148872760|gb|EDL71126.1| peptide deformylase [Leptolyngbya valderiana BDU 20041]
          Length = 118

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 48/88 (54%)

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            HA    P   +NP+I+  SDD  +  EGCLS+P  R  V R   I V Y+D + + Q  
Sbjct: 11  PHAPMLEPTAMVNPRILHCSDDRVLGWEGCLSVPGRRGWVPRYREIEVEYLDRSGRLQRR 70

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152
                +A   QHE DHLNG++F+D + +
Sbjct: 71  VLKDFVARIFQHEFDHLNGLVFLDRVEK 98


>gi|319957487|ref|YP_004168750.1| formylmethionine deformylase [Nitratifractor salsuginis DSM 16511]
 gi|319419891|gb|ADV47001.1| formylmethionine deformylase [Nitratifractor salsuginis DSM 16511]
          Length = 283

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + K LV++PD  +      +    +  +  L++++ E M +     L A+Q+   + ++V
Sbjct: 1   MVKELVVYPDDRILS-CVDVRDFRDESLPRLLNDIEETMEAHGLNALTAMQVAHPFNIIV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I  +D ++ +     INP+I+     F  +QE     PD    V R   I + Y D N Q
Sbjct: 60  IKKEDGSYWE----LINPRILKKEGRFE-HQESTSYYPDIELTVPRYEKINLIYEDRNGQ 114

Query: 121 HQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I  +   LA  +Q ++D L G   +D + +  R+ +   ++
Sbjct: 115 PHSIKIEDRELAALIQQQMDFLAGGTPLDRVDKNYREKVLTALA 158


>gi|257063393|ref|YP_003143065.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
 gi|256791046|gb|ACV21716.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM
           20476]
          Length = 140

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60
           + + +V   D IL   S+P ++  ++   +++++++ + S     GLAA QIG   R+VV
Sbjct: 1   MIREIVT-DDEIL---SKPCDEGTAEDAAIVEDLIDTLKSLETAAGLAANQIGETKRIVV 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NA 119
                   + NP    NP I    +  +V +E CLS       VKR A I V Y +  N 
Sbjct: 57  Y----LDMKDNPHAMFNPVIKMALNPSTVAEE-CLSHEGQYVTVKRFAKINVAYQELING 111

Query: 120 Q--HQIIYADGLLATCLQHELDHLNGIL 145
           Q   +    +G  A  +QH +DH NG L
Sbjct: 112 QLVDRKRKFEGWTAQVIQHLVDHCNGKL 139


>gi|238855159|ref|ZP_04645481.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|260665536|ref|ZP_05866382.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|282932572|ref|ZP_06337994.1| peptide deformylase [Lactobacillus jensenii 208-1]
 gi|313473142|ref|ZP_07813626.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|238832240|gb|EEQ24555.1| peptide deformylase [Lactobacillus jensenii 269-3]
 gi|239528614|gb|EEQ67615.1| peptide deformylase [Lactobacillus jensenii 1153]
 gi|260560657|gb|EEX26635.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US]
 gi|281303320|gb|EFA95500.1| peptide deformylase [Lactobacillus jensenii 208-1]
          Length = 136

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLV 59
           + K +V   +  L+R S P  K +  I     ++ + + +     +G+AA  IG   R++
Sbjct: 1   MIKEIVK-DEMFLKRKSLPATKADLPIGQ---DLRDTLQANKERCVGMAANMIGYSKRVI 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++++         +V  N  I+   D + V  EGCLS+   R +  R   + V ++D   
Sbjct: 57  IVNIGFLN-----VVMFNSVILERKDPYQVS-EGCLSLSGSR-NTLRFKEVKVAFLDEKW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           ++Q +   G  A   QHE+DHL GIL 
Sbjct: 110 ENQELTLTGFAAEICQHEMDHLEGILI 136


>gi|145531163|ref|XP_001451350.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419001|emb|CAK83953.1| unnamed protein product [Paramecium tetraurelia]
          Length = 219

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 15/169 (8%)

Query: 6   LVIFPDP---ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61
           ++   D     + + ++PI+ ++  +  +I  +       + + L+  QIG  Y++ V+ 
Sbjct: 20  ILRIGDKDYQKITQQTQPIQMMSQRMKQIIQCLKMTAAQENAVSLSCPQIGYNYQIFVVL 79

Query: 62  -------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
                     ++    + M  INP+ +  S    V  E C S P     V+R   I  ++
Sbjct: 80  KHMKKNQWCYNNLSSSDYMTLINPQKLKQSRFTQVEWEECPSFPFLMGKVERPYKIEYQF 139

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           ++   +       G  A  +QHE+DHL GI     L    + ++  K  
Sbjct: 140 INEKFKLIKQTLSGFEARVVQHEMDHLEGIT----LDSPDKMLLESKRE 184


>gi|297201621|ref|ZP_06919018.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
 gi|197711008|gb|EDY55042.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
          Length = 146

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDY 100
           G GLAA Q+GV  RL V D  D    ++    +NP++              EGCLS P  
Sbjct: 20  GAGLAANQVGVGLRLFVYDCPDDDEVRHVGHLVNPELDQLDPAGRRLLDDSEGCLSGPGA 79

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
              V R      R  D + +  +I   G  A C  HE D  N
Sbjct: 80  VMAVPRPDRAGGRGFDRDGEPLVIEGTGYFAGCPAHETDTAN 121


>gi|315221248|ref|ZP_07863171.1| peptide deformylase [Streptococcus anginosus F0211]
 gi|315189607|gb|EFU23299.1| peptide deformylase [Streptococcus anginosus F0211]
          Length = 140

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + KP+V   D + L++ ++P  K +  I     ++ + + +     +G+AA  IGV  ++
Sbjct: 5   MIKPIVK--DMLFLQQKAQPACKEDVGIGQ---DLFDTLKANQDKCVGMAANMIGVQKQV 59

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++       +   P++  NP +      +   +E CLS+   R    R   ITV Y+D +
Sbjct: 60  IIF-----MYGMVPVIMFNPILKRKLSPYRA-EESCLSLAGSR-LTTRYKEITVDYLDQH 112

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            Q Q +      A   QHELDHL GIL 
Sbjct: 113 WQKQTLTLKDFPAQICQHELDHLEGILI 140


>gi|320546940|ref|ZP_08041241.1| peptide deformylase [Streptococcus equinus ATCC 9812]
 gi|320448342|gb|EFW89084.1| peptide deformylase [Streptococcus equinus ATCC 9812]
          Length = 136

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + K +V   D   L + S    + +   + L  ++ + + +   + +G+AA  IGV  R 
Sbjct: 1   MIKEIVK--DTFFLAQKSEEATEAD---LYLATDLQDTLNANRENCVGMAANMIGVKKRA 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +++++         ++  NP +   S  F   +E CLS+   R+  +R   I V +MD N
Sbjct: 56  IIVNMG-----LGDLIMFNPVMTNKSLPFDT-EESCLSLVGSRS-TRRYQKIDVTFMDKN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              Q +   GL A   QHELDHL GI+ 
Sbjct: 109 WNKQSLTLTGLPAQICQHELDHLEGIII 136


>gi|171778277|ref|ZP_02919483.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282977|gb|EDT48401.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 136

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 15/148 (10%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58
           + K +V   D   L + S+   K +   + L  ++ + + +   + IG+AA  IGV  R+
Sbjct: 1   MIKEIVK--DTFFLAQKSQEATKED---LYLAQDLQDTLNANRDNCIGMAANIIGVKKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +++++         +V  NP +   S  F   +E CLS+   R   +R   I V +MD N
Sbjct: 56  IIVNMGLAD-----LVMFNPVMTNKSLPFDT-EESCLSLLGSR-PTRRYQKIDVTFMDKN 108

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
              Q +   GL A   QHELDHL GI+ 
Sbjct: 109 WNKQSLTLTGLAAQICQHELDHLEGIII 136


>gi|188588885|ref|YP_001921872.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499166|gb|ACD52302.1| polypeptide deformylase family protein [Clostridium botulinum E3
           str. Alaska E43]
          Length = 136

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L   S    K +     +ID++++ + +     +GLAA  IGV  R++V           
Sbjct: 12  LGEKSEEATKKD---KVVIDDLIDTLKANIEHCVGLAANMIGVKKRILVFVAGKVI---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  +NP I+     +   +E CLS+  +R   KR   I V+Y+D N + +     G +A
Sbjct: 65  -IPMVNPVILKKEKIYET-EESCLSLTGFR-KTKRYEIIEVQYLDKNFKKKKQVFTGFVA 121

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH  GI+ 
Sbjct: 122 QIIQHEMDHFEGIII 136


>gi|227530489|ref|ZP_03960538.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
 gi|227349594|gb|EEJ39885.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540]
          Length = 136

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + KP+      +L++ + P  + + ++     ++ + +  +  + IG+AA  I +   ++
Sbjct: 1   MIKPI-NHDQILLQQRAIPATRQDLNVGI---DLKDTLNAHHAECIGMAANMISINKAII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +  L         MV  NP+I    + +    EGCLS+P  R  V R   I V + D N 
Sbjct: 57  IASLGPIN-----MVMYNPQITQKQEPYQTA-EGCLSLPGKR-TVTRYRQIKVTFRDQNW 109

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
             Q +    + A  +QHE+DHLNGIL 
Sbjct: 110 HLQTLQLSDIAAEIIQHEIDHLNGILI 136


>gi|238925766|ref|YP_002939283.1| polypeptide deformylase [Eubacterium rectale ATCC 33656]
 gi|238877442|gb|ACR77149.1| polypeptide deformylase [Eubacterium rectale ATCC 33656]
          Length = 135

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 17/143 (11%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           MVKK   I  DP+ L + S    + +     ++ ++L+ + +     +G+AA  IGV   
Sbjct: 1   MVKK---IMRDPLFLAQKSEDATEDD---KQVVTDLLDTLKANLDHCVGMAANMIGVKKN 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V+              INP I   S  F   +EGCLS+   R    R   I V Y+D 
Sbjct: 55  IIVVAAGPFQ-----FAMINPVITGKSGAFQT-EEGCLSLEGVR-PCTRYKEIEVDYLDQ 107

Query: 118 NAQHQIIYADGLLATCLQH-ELD 139
           N + +     G  A  +QH E D
Sbjct: 108 NFKKKHGKYTGWTAQIIQHDECD 130


>gi|251781139|ref|ZP_04824059.1| polypeptide deformylase family protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243085454|gb|EES51344.1| polypeptide deformylase family protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 136

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L   S    K +     +ID++++ + +     +GLAA  IGV  R++V           
Sbjct: 12  LGEKSEEATKKD---KVVIDDLIDTLKANIEHCVGLAANMIGVKKRILVFVAGKVI---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +  +NP I+     +   +E CLS+  +R   KR   I V+Y+D N + +     G +A
Sbjct: 65  -IPMVNPVILKKEKIYET-EESCLSLTGFR-KTKRYEIIEVQYLDKNFKKKKQVFTGFVA 121

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH  GI+ 
Sbjct: 122 QIIQHEMDHFEGIII 136


>gi|306833720|ref|ZP_07466847.1| peptide deformylase [Streptococcus bovis ATCC 700338]
 gi|304424490|gb|EFM27629.1| peptide deformylase [Streptococcus bovis ATCC 700338]
          Length = 136

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           L + S    K +   + L  ++ + + +   + +G+AA  IGV  R +++++        
Sbjct: 12  LAQKSEEATKED---LYLAQDLQDTLVANRDNCVGMAANMIGVKKRAIIVNMGVAD---- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
            +V  NP ++  S  F   +E CLS+   R   +R   I V ++D N   Q +   GL A
Sbjct: 65  -LVMFNPVLLNKSLPFDT-KESCLSLTGAR-PTRRYQKIEVAFLDKNWSQQTLTLTGLPA 121

Query: 132 TCLQHELDHLNGILF 146
              QHELDHL G++ 
Sbjct: 122 QICQHELDHLEGVII 136


>gi|187934485|ref|YP_001886878.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B]
 gi|187722638|gb|ACD23859.1| polypeptide deformylase family protein [Clostridium botulinum B
           str. Eklund 17B]
          Length = 136

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           + KP+V     +L     S    K +  +   ID++++ + +     +GLA   IGV  R
Sbjct: 1   MIKPIVK---DVLFLGEKSEEATKKDKAV---IDDLIDTLKANIEHCVGLAGNMIGVKKR 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V            +  +NP I+     +   +E CLS+  +R   KR   I V+Y+D 
Sbjct: 55  ILVFVAGKVI-----IPMVNPVILKKEKSYET-EESCLSLTGFR-KTKRYEIIEVQYLDK 107

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
           N + +     G +A  +QHE+DH  GI+ 
Sbjct: 108 NFKKKKKVFTGFVAQIIQHEMDHFEGIII 136


>gi|139438029|ref|ZP_01771582.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC
           25986]
 gi|133776226|gb|EBA40046.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC
           25986]
          Length = 136

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 11/146 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + KP++   +  LR  S      ++    +L+D + E  +  + +GLAA  IGV  R++ 
Sbjct: 1   MIKPIMKS-EFFLRLPSEDAGPDDAVTGQDLLDTLHE--HEHECVGLAANMIGVRKRIIC 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   + A     ++  NP+I+   + +    EGCLS+   R    R   I V Y+D N  
Sbjct: 58  VKDGNRA-----LLMYNPQILEQVNAYQTS-EGCLSLIGER-PCTRYRRIKVEYLDENFV 110

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
           H+I    G  A  +QHE+DH NGI+ 
Sbjct: 111 HRIKNFSGYTAEVIQHEIDHCNGIVI 136


>gi|145491449|ref|XP_001431724.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398829|emb|CAK64326.1| unnamed protein product [Paramecium tetraurelia]
          Length = 180

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 13/156 (8%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVM------YSTDGIGLAAVQIGVLYRLVVI-DL 63
             ILR+         +   + +  M++ +      +S + + LAA Q+G   RL V  DL
Sbjct: 19  HEILRKKIFEHYNFTNKEEDTLSTMIDTLRLYNKLHSIEALALAAPQVGWEKRLFVCADL 78

Query: 64  QDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIP-DYRADVKRSAFITVRYMDC 117
           +    +K        V++NP+II  S+D  V +E CLSIP +  A V RS  IT++Y + 
Sbjct: 79  ELQQRKKAKYIQKVDVYLNPEIIKKSNDLIVSKENCLSIPPNQIACVMRSNKITMKYYNL 138

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
                ++ A+GL A   QHE+DHL+GI  ++  + +
Sbjct: 139 LGIEMVVEAEGLQACIYQHEIDHLDGINALEKATSI 174


>gi|290476476|ref|YP_003469381.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
 gi|289175814|emb|CBJ82617.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
          Length = 96

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
          M    ++  PD  LR+    +  ++ +I  LID+ML+ MY T +GIGLAA Q+G    ++
Sbjct: 1  MAILNILTIPDERLRQKCIDVTHVD-EIQTLIDDMLDTMYDTDNGIGLAAPQVGRKEAVL 59

Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97
          +ID+    +R  PMV +NPKI+   +   V QEGCLSI
Sbjct: 60 IIDISP--NRDQPMVLVNPKIVEK-ERRVVNQEGCLSI 94


>gi|257068452|ref|YP_003154707.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
 gi|256559270|gb|ACU85117.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
           4810]
          Length = 240

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 17/131 (12%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV-------------FINPKII 81
           M   M +  G+GLAA Q+G+     VI+ +         V              ++P + 
Sbjct: 67  MTVTMRAAPGVGLAAPQVGLPLSFYVIEDRYADEPGEDEVGDLLERRPLPLRALLDPVLE 126

Query: 82  TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA----QHQIIYADGLLATCLQHE 137
                     EGCLS+  +++ V RS  + +R  +       +       G  A  LQHE
Sbjct: 127 PLGTQRVYAFEGCLSVDGWQSIVPRSRRVLLRATELLGDGSLREVEEEHVGWTARILQHE 186

Query: 138 LDHLNGILFID 148
            DHL G L  D
Sbjct: 187 TDHLAGTLCHD 197


>gi|291524038|emb|CBK89625.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale DSM 17629]
          Length = 135

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 17/143 (11%)

Query: 1   MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57
           MVKK   I  DP+ L + S    + +     ++ ++L+ + +     +G+AA  IGV   
Sbjct: 1   MVKK---IMRDPLFLAQKSEDATEDD---KQVVTDLLDTLKANLDHCVGMAANMIGVKKN 54

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V+              INP I   S  F   +EGCLS+   R    R   I V Y+D 
Sbjct: 55  IIVVAAGPFQ-----FAMINPVITGKSGVFQT-EEGCLSLEGVR-PCTRYKEIEVDYLDQ 107

Query: 118 NAQHQIIYADGLLATCLQH-ELD 139
           N + +     G  A  +QH E D
Sbjct: 108 NFKKKHGKYTGWTAQIIQHDECD 130


>gi|29655164|ref|NP_820856.1| peptide deformylase [Coxiella burnetii RSA 493]
 gi|39931092|sp|Q83AK6|DEF2_COXBU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|29542436|gb|AAO91370.1| peptide deformylase [Coxiella burnetii RSA 493]
          Length = 209

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 13/152 (8%)

Query: 13  ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVI-----DLQD 65
           +L +V+  +E  +       I+ M     S  G  G A  Q+G+  R++++     D   
Sbjct: 13  VLYKVASEVEIPLTKTTKEKIEAMRIFYKSFQGKAGFAVPQVGLSERIILVEQHLFDTTM 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH---- 121
                 P + +NP     SD      EGCLS+P     V+R   + +     ++      
Sbjct: 73  AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132

Query: 122 --QIIYADGLLATCLQHELDHLNGILFIDHLS 151
             +  Y     +   QHE+DHL G +++D   
Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164


>gi|115437554|ref|NP_001043323.1| Os01g0555800 [Oryza sativa Japonica Group]
 gi|113532854|dbj|BAF05237.1| Os01g0555800 [Oryza sativa Japonica Group]
          Length = 121

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 62  DLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D++    R  + +V INPK+ T S   +++ EGCLS+  YRA V+R   + V  +D N +
Sbjct: 7   DIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGR 66

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A G  A  LQHE DHL G L++D +  
Sbjct: 67  PIKVEASGWQARILQHECDHLEGTLYVDTMVP 98


>gi|42560770|ref|NP_975221.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492266|emb|CAE76863.1| Peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301320698|gb|ADK69341.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 200

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97
           Y    +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +     EGCLS+
Sbjct: 70  YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129

Query: 98  PDYR-ADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
            +Y    V R   I V+  D   +    +      A   QHE+DH  G+L+ DH+++
Sbjct: 130 DNYHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|154505120|ref|ZP_02041858.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149]
 gi|153794599|gb|EDN77019.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149]
          Length = 159

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTD-----GIGLAAVQIGVL 55
           +++ +++  +P L  +S  +++   + + ++  +M + +         G  +AA QIGV 
Sbjct: 1   MERDILLLGNPRLYEISEEVKREELEELRSVFTDMFDCIRGIRRDYGFGRAIAAPQIGVQ 60

Query: 56  YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            RL+ I          P V INP++    ++     + C+S P+    V+R     + Y+
Sbjct: 61  KRLICILTD------QPYVIINPRLEFVGNEMMELMDDCMSFPNLLVRVRRYRRCILHYL 114

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           D N + Q +Y +  ++  +QHE DHL+GIL        K  +I +
Sbjct: 115 DENWKEQEMYLEDDMSELIQHEYDHLDGILATMRAIDNKSFVIKQ 159


>gi|256843756|ref|ZP_05549243.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|295691921|ref|YP_003600531.1| peptide deformylase [Lactobacillus crispatus ST1]
 gi|256613661|gb|EEU18863.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN]
 gi|295030027|emb|CBL49506.1| Peptide deformylase [Lactobacillus crispatus ST1]
          Length = 137

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 13/148 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRL 58
           M  + + I     LR+ S   +    + + +  N+ + + +  G   GLAA  IG   ++
Sbjct: 1   MTAQKI-IHDQLFLRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTKQI 56

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +            P V +NP+II     +    EGCLS+   R +V+R   ITV Y +  
Sbjct: 57  IAFYAGPL-----PFVMLNPRIIQKKQMYLAS-EGCLSLEGER-NVQRYEEITVTYQNME 109

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146
            +         +A  +QHE+DH NGIL 
Sbjct: 110 LETVTQTFGDFIAETIQHEIDHCNGILI 137


>gi|289676938|ref|ZP_06497828.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 100

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 35/90 (38%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
            + INP I           EGCLS+P  R  V R   I     D   Q     A G  A 
Sbjct: 1   TILINPLITPLGSTLEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPQGQPIERVAHGFHAR 60

Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +QHE DHL G L+   ++   +      M
Sbjct: 61  VVQHECDHLIGRLYPSRITDFSKFGFMDVM 90


>gi|160895157|ref|ZP_02075930.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50]
 gi|156863191|gb|EDO56622.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50]
          Length = 144

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 17/149 (11%)

Query: 2   VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYR 57
           + KP+V     IL   + S P  +++   MN+++++ + + +     +G+ A  IG    
Sbjct: 9   MVKPIVK---DILFLGQKSVPATQLD---MNVVNDLRDTLAANRERCVGMEANMIGYKKN 62

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++++           M+ INP I +    +   +EGCLS+   R    R   I V + D 
Sbjct: 63  MIIVSAGPVD-----MIMINPVICSKIGRYET-EEGCLSLEGKR-KTTRYKKIEVEFQDA 115

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146
               + +  +G +A  +QHE+DH NGI+ 
Sbjct: 116 GFVKRKMAFEGFVAQIIQHEVDHCNGIVI 144


>gi|256849685|ref|ZP_05555117.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|262047729|ref|ZP_06020681.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
 gi|293380519|ref|ZP_06626582.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|312977032|ref|ZP_07788781.1| peptide deformylase [Lactobacillus crispatus CTV-05]
 gi|256713801|gb|EEU28790.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US]
 gi|260571934|gb|EEX28502.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US]
 gi|290922919|gb|EFD99858.1| peptide deformylase [Lactobacillus crispatus 214-1]
 gi|310896360|gb|EFQ45425.1| peptide deformylase [Lactobacillus crispatus CTV-05]
          Length = 137

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR+ S   +    + + +  N+ + + +  G   GLAA  IG   +++            
Sbjct: 13  LRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTKQIIAFYAGPL----- 64

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P V +NP+II     +    EGCLS+   R +V+R   ITV Y +   +         +A
Sbjct: 65  PFVMLNPRIIQKKQMYLAS-EGCLSLEGER-NVQRYEEITVTYQNMELETVTQTFGDFIA 122

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH NGIL 
Sbjct: 123 ETIQHEIDHCNGILI 137


>gi|260881156|ref|ZP_05403747.2| peptide deformylase [Mitsuokella multacida DSM 20544]
 gi|260849662|gb|EEX69669.1| peptide deformylase [Mitsuokella multacida DSM 20544]
          Length = 139

 Score = 99.4 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLV 59
           + + +V      L + S P ++ +  I    +++++ + +     +GLAA  IG    ++
Sbjct: 3   MIRDIVR-DTFFLAQPSVPAQRKDVPI---AEDLIDTLKANADRCVGLAANMIGERKCII 58

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I +         +  +NP +I  S +     EGCLS+   R    R  +I V Y D   
Sbjct: 59  AIRVG-----HAYLAMLNPTVIRHSKEVYNVSEGCLSLDGER-PTTRYKWIEVEYRDLKF 112

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q        A  +QHE+DH  GIL 
Sbjct: 113 KKQKQVFRDFPAEIVQHEMDHCEGILI 139


>gi|83319871|ref|YP_424193.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283757|gb|ABC01689.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 200

 Score = 98.6 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97
           Y    +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +     EGCLS+
Sbjct: 70  YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129

Query: 98  P-DYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
             D+   V R   I V+  D   +    +      A   QHE+DH  GIL+ DH+++
Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGILYYDHINK 186


>gi|118386952|ref|XP_001026593.1| polypeptide deformylase family protein [Tetrahymena thermophila]
 gi|89308360|gb|EAS06348.1| polypeptide deformylase family protein [Tetrahymena thermophila
           SB210]
          Length = 318

 Score = 98.6 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 12/165 (7%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV----------IDL 63
           L     P++     + + I N+      +  + LAA QIG+  R +V          + +
Sbjct: 92  LESKCLPVQGFTQTLKSEILNLKYHAEVSGRVNLAANQIGIPKRFIVLAKPDYLYKRVWV 151

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D+   ++    +NP+I+          E     P  R    R   I V+Y++   +   
Sbjct: 152 NDNLDIQHLHALVNPRILDKDKFMEYDWEQTACFPTVRFRRLRYHHILVQYLNEQMEQVE 211

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM--SKLV 166
           +  +G  +   Q  LDHLNGI+  D +  +    +  +    KL+
Sbjct: 212 VEMNGWESRLFQQSLDHLNGIIPFDEVKNMLDFELLPEYNDEKLI 256


>gi|227878034|ref|ZP_03996024.1| peptide deformylase [Lactobacillus crispatus JV-V01]
 gi|227862352|gb|EEJ69881.1| peptide deformylase [Lactobacillus crispatus JV-V01]
          Length = 143

 Score = 98.6 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 12/135 (8%)

Query: 14  LRRVSRPIEKINSDIMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHRKN 71
           LR+ S   +    + + +  N+ + + +  G   GLAA  IG   +++            
Sbjct: 19  LRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTKQIIAFYAGPL----- 70

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
           P V +NP+II     +    EGCLS+   R +V+R   ITV Y +   +         +A
Sbjct: 71  PFVMLNPRIIQKKQMYLAS-EGCLSLEGER-NVQRYEEITVTYQNMELETVTQTFGDFIA 128

Query: 132 TCLQHELDHLNGILF 146
             +QHE+DH NGIL 
Sbjct: 129 ETIQHEIDHCNGILI 143


>gi|331703218|ref|YP_004399905.1| peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801773|emb|CBW53926.1| Peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 200

 Score = 97.8 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97
           Y    +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +     EGCLS+
Sbjct: 70  YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129

Query: 98  P-DYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
             D+   V R   I V+  D   +    +      A   QHE+DH  G+L+ DH+++
Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|313665134|ref|YP_004047005.1| peptide deformylase [Mycoplasma leachii PG50]
 gi|312949522|gb|ADR24118.1| peptide deformylase [Mycoplasma leachii PG50]
          Length = 200

 Score = 97.8 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97
           Y    +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +     EGCLS+
Sbjct: 70  YLRPAVGLAAPQIGVNKDIFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129

Query: 98  P-DYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
             D+   V R   I V+  D   +    +      A   QHE+DH  G+L+ DH+++
Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|302519737|ref|ZP_07272079.1| formylmethionine deformylase [Streptomyces sp. SPB78]
 gi|302428632|gb|EFL00448.1| formylmethionine deformylase [Streptomyces sp. SPB78]
          Length = 403

 Score = 97.8 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 15/146 (10%)

Query: 18  SRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + P+ + +             +I  ++D +L       G+GL+A QIGV     ++    
Sbjct: 243 AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPW 302

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A     +  +NP++I  S + +   E C   P  R    R   ITVR            
Sbjct: 303 GAPA---VTLLNPRVIAGSRETAEEYESCPGRPGPRTPTSRPNEITVRTTTLTGHPLTTT 359

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
               LA  + HE+DHL G+L    L 
Sbjct: 360 YTQPLARLVHHEIDHLKGLLHPPRLP 385


>gi|256384123|gb|ACU78693.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384955|gb|ACU79524.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455689|gb|ADH21924.1| peptide deformylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 200

 Score = 97.8 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97
           Y    +GLAA QIGV   +  +  Q   ++      IN K+I+ S   +     EGCLS+
Sbjct: 70  YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129

Query: 98  P-DYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152
             D+   V R   I V+  D   +    +      A   QHE+DH  G+L+ DH+++
Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186


>gi|294669089|ref|ZP_06734175.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
          29315]
 gi|291309081|gb|EFE50324.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC
          29315]
          Length = 76

 Score = 97.1 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
          M    ++ +PD  L  V++P+EKI+  I  LI +M + MY   GIGLAA Q+ V  R+VV
Sbjct: 1  MALLNILQYPDDRLHTVAKPVEKIDERIKTLITDMFDTMYEARGIGLAATQVDVHERVVV 60

Query: 61 IDLQD 65
          +DL +
Sbjct: 61 MDLSE 65


>gi|307069643|ref|YP_003878120.1| peptide deformylase [Candidatus Zinderia insecticola CARI]
 gi|306482903|gb|ADM89774.1| peptide deformylase [Candidatus Zinderia insecticola CARI]
          Length = 144

 Score = 97.1 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 86/143 (60%), Gaps = 2/143 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +P+  L ++S+ I KIN+ I NLI  M E+MY+  GIGL+A+   +  +  +  +  
Sbjct: 4   IINYPNKNLFKISKKIYKINNKIKNLIFYMSEIMYNLLGIGLSAI--QINKKKKIFIIDI 61

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             ++    +FIN KI+  S     ++EGCLS P    ++KRS +I + +++   + +I  
Sbjct: 62  SKNKNKLKIFINSKILYLSKKKIYFKEGCLSFPGIYKNIKRSIYIKIIFINIKGKFKIYK 121

Query: 126 ADGLLATCLQHELDHLNGILFID 148
           +  + + C+QHE++H+NG +F++
Sbjct: 122 SKNIFSICIQHEIEHINGKIFLN 144


>gi|94502278|ref|ZP_01308760.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94451171|gb|EAT14114.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 117

 Score = 96.7 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 9/104 (8%)

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           VFINP II       + +EGCLSIP+   ++KR   I + Y D N +    + +GLL+  
Sbjct: 1   VFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKKYKQHFNGLLSII 60

Query: 134 LQHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168
           +QHE DH+ G LFID++  LK  +I K         K+ KL +L
Sbjct: 61  IQHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 104


>gi|163784804|ref|ZP_02179594.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879931|gb|EDP73645.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 108

 Score = 95.9 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 7/109 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59
           M K  ++ +PD  L+ VS+ +     +    ++ +   MY++  G+G+AA Q+    R +
Sbjct: 1   MKKLKILTYPDERLKVVSKEVIDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNKHIRTI 60

Query: 60  VIDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           ++D   + H+KN      MV  NPKII +  +  + +E C+S+PDY  +
Sbjct: 61  IVDASHYKHKKNKLNHGLMVLSNPKIIAYDGEIII-RERCMSVPDYTGN 108


>gi|50365386|ref|YP_053811.1| polypeptide deformylase [Mesoplasma florum L1]
 gi|50363942|gb|AAT75927.1| polypeptide deformylase [Mesoplasma florum L1]
          Length = 200

 Score = 95.1 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 40  YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSI 97
           Y    +GLAA QIGV   +  I      ++      IN + +  S   +  +  EGCLS+
Sbjct: 71  YLRPAVGLAAPQIGVNKDMFYIRFNLPNNQIEEYAMINTEYLAKSSRMAALEEGEGCLSV 130

Query: 98  P-DYRADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
             D    V RS  I+V+  D    +   +      +   QHE+DH  G L+ DH++  + 
Sbjct: 131 DEDKHGIVPRSWIISVKGFDWLKKEWVELKLKDYRSIVFQHEMDHNIGNLYYDHINVNEP 190

Query: 156 DMI 158
           + I
Sbjct: 191 EFI 193


>gi|328868869|gb|EGG17247.1| hypothetical protein DFA_08237 [Dictyostelium fasciculatum]
          Length = 201

 Score = 94.7 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 25/172 (14%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL--AAV-------Q 51
           M+ K ++   + +L++V++P  K        ++ +L++M       L  A         Q
Sbjct: 1   MISKNILKIGNSLLKQVAQPWTKEELKDTKRVEKLLDLMDDVLIPSLQSAQPIKRNSNYQ 60

Query: 52  I-------------GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98
           I             G    L   +L  +       +   PK IT ++   V  E CLS+P
Sbjct: 61  ITSGGPVFGKTGIAGSSKNLF--NLTKYKRSMQTPLVTTPKKITANNTIDV-WESCLSVP 117

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            Y   V R+    + + D     + I ADGL++ CLQHE DHL G +F + L
Sbjct: 118 SYYGRVTRARKCIINFWDITGTPRSIEADGLISACLQHENDHLLGRVFFERL 169


>gi|291390393|ref|XP_002711708.1| PREDICTED: peptide deformylase-like [Oryctolagus cuniculus]
          Length = 126

 Score = 93.6 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 38/78 (48%)

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           V +NP +         + EGC S+  + A V R   + +  +D   +  +  A G  A  
Sbjct: 35  VLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEQVVWPASGWTARI 94

Query: 134 LQHELDHLNGILFIDHLS 151
           +QHE+DHL G LFID + 
Sbjct: 95  IQHEMDHLQGCLFIDKMD 112


>gi|333026448|ref|ZP_08454512.1| putative formylmethionine deformylase [Streptomyces sp. Tu6071]
 gi|332746300|gb|EGJ76741.1| putative formylmethionine deformylase [Streptomyces sp. Tu6071]
          Length = 434

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 15/146 (10%)

Query: 18  SRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + P+ + +             +I  ++D +L       G+GL+A QIGV     ++    
Sbjct: 274 AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPW 333

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A     +  +NP +I  S + +   E C      R    R   ITVR            
Sbjct: 334 GAPA---VTLLNPCVIAGSRETAEEYESCPGRSGPRTPTSRPNEITVRTTTLTGHPLTTT 390

Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151
               LA  + HE+DHL G+L    L 
Sbjct: 391 YTQPLARLVHHEIDHLKGLLHPPRLP 416


>gi|290977842|ref|XP_002671646.1| predicted protein [Naegleria gruberi]
 gi|284085216|gb|EFC38902.1| predicted protein [Naegleria gruberi]
          Length = 297

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 60/157 (38%), Gaps = 34/157 (21%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVV--------------------------------ID 62
           M   +Y  DG G++A Q+    R  +                                I 
Sbjct: 119 MSLKVYHDDGTGISAPQLYHKIRYFIGTDRIFKATPKLKVVNAKQSGGFEEKKNATSEIF 178

Query: 63  LQD--HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             D  +A+  +  ++I+PKI+  S +     EGCLS  +    + RS  I V Y++    
Sbjct: 179 DPDASYAYDVDLELYIDPKIVDKSVEMEREVEGCLSFKNEYLFLMRSKEIEVEYINMFGV 238

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            Q    DG  A   QHE DHL GI   D +   K+D 
Sbjct: 239 KQRKTLDGFSARVFQHEFDHLEGINMFDRVVDKKKDR 275


>gi|68068927|ref|XP_676374.1| formylmethionine deformylase [Plasmodium berghei strain ANKA]
 gi|56496040|emb|CAH95054.1| formylmethionine deformylase, putative [Plasmodium berghei]
          Length = 122

 Score = 92.8 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 38/57 (66%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +VI+P+PILR+ S  +   + ++ NLI  M + MY + GIGL+A Q+ +  R++V +
Sbjct: 62  IVIYPNPILRQKSEEVIYFDDNLKNLIRRMFKTMYESKGIGLSAPQVNINKRIIVWN 118


>gi|26554017|ref|NP_757951.1| peptide deformylase [Mycoplasma penetrans HF-2]
 gi|32363151|sp|Q8EVJ8|DEF_MYCPE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|26454025|dbj|BAC44355.1| polypeptide deformylase [Mycoplasma penetrans HF-2]
          Length = 186

 Score = 92.4 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 17/176 (9%)

Query: 6   LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIG 53
           +V   +P++ +    +   +  +  ++I  ML  + ++            GIG+AA+Q+G
Sbjct: 12  IVYDNNPVMHKPIEDVVFPLTKEDEHVISQMLSYVDASYEGEADKYDIRAGIGIAAIQLG 71

Query: 54  VLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIP-DYRADVKRSAFI 110
              +++ I L D     +  +  NPKII  + S  +    EGCLS+  D++    R + +
Sbjct: 72  CPKKIIYIHLDDKNGE-HKYLMANPKIIKESTSKMYLKNGEGCLSVKKDHKGLSIRKSIV 130

Query: 111 TVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            V+ +D    +   + A  LLA C QHE+DH N   + + ++      + K   ++
Sbjct: 131 WVKGIDLFTNKEIEVKATDLLAACFQHEVDHNNNKFYYNRINESDPYYVEKNWEEI 186


>gi|317488618|ref|ZP_07947161.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325831659|ref|ZP_08164876.1| peptide deformylase [Eggerthella sp. HGA1]
 gi|316912270|gb|EFV33836.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA]
 gi|325486530|gb|EGC88979.1| peptide deformylase [Eggerthella sp. HGA1]
          Length = 139

 Score = 92.1 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVV 60
           + K LV   + IL +V  P    ++    + D+++E + S DG   LAA QIG    ++ 
Sbjct: 1   MIKELVK-DEAILSQVCTPATTDDA---QVADDLVETLTSMDGAACLAANQIGATTCIIA 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM---DC 117
               D      P V  NP+++     F    EGCLS+ +  + V R   I V Y    D 
Sbjct: 57  YLDDD----DQPHVMYNPRLLQALGAFKAV-EGCLSL-EADSKVTRFDRIKVGYSELVDG 110

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGIL 145
             + +    +G  A  +QH +DH  G L
Sbjct: 111 ELKPRKKDFNGWTAQIIQHGIDHCKGKL 138


>gi|318060496|ref|ZP_07979219.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG]
          Length = 426

 Score = 91.7 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLA 48
           M +  +++   P L   + P+ + +             +I  ++D +L       G+GL+
Sbjct: 262 MGELGVLLEGAPEL---AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLS 318

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           A QIGV     ++     A     +  +NP++I  S + +   E C           R  
Sbjct: 319 APQIGVPRAAALVQPPWGAPA---VTLLNPRVIAGSRETAEEYESCPGRLGPGTPTSRPN 375

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            ITVR                LA  + HE+DHL G+L   HL 
Sbjct: 376 EITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLLHPPHLP 418


>gi|257790523|ref|YP_003181129.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
 gi|257474420|gb|ACV54740.1| formylmethionine deformylase [Eggerthella lenta DSM 2243]
          Length = 139

 Score = 91.3 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVV 60
           + K LV   +  L +V  P    ++    + D+++E + S DG   LAA QIG    ++ 
Sbjct: 1   MIKELVK-DEATLSQVCTPATAEDA---QVADDLVETLTSMDGAACLAANQIGATTCIIA 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM---DC 117
               D      P V  NP+++     F    EGCLS+ +  + V R   I V Y    D 
Sbjct: 57  YLDDD----DQPHVMYNPRLLQALGAFKAV-EGCLSL-EADSKVTRFDRIKVGYSELVDG 110

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGIL 145
             + +    +G  A  +QH +DH  G L
Sbjct: 111 ELKPRKKDFNGWTAQIIQHGIDHCKGKL 138


>gi|157825208|ref|YP_001492928.1| polypeptide deformylase [Rickettsia akari str. Hartford]
 gi|157799166|gb|ABV74420.1| Polypeptide deformylase [Rickettsia akari str. Hartford]
          Length = 100

 Score = 91.3 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131
             ++INP       D     EG  S+ +    V R   I     D N        +G LA
Sbjct: 3   KTIWINPSYKQVDIDKHEDYEGFFSVENATGPVARFKKIHCHAYDINGHQIQGITEGFLA 62

Query: 132 TCLQHELDHLNGILFIDHLSRLK---RDMITKKMSKLV 166
             +QHE+DHLNG +F+D+++  K   ++   +K  K +
Sbjct: 63  RVIQHEIDHLNGKVFLDYVAPEKIMTKEKYLEKRKKAM 100


>gi|110004337|emb|CAK98675.1| putative peptide deformylase 2 protein [Spiroplasma citri]
          Length = 192

 Score = 90.9 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 11/128 (8%)

Query: 43  DGIGLAAVQIGVLYRLVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEG--CL 95
             +GLAA QIG   ++  I +++               INPKII  S   +  +EG  CL
Sbjct: 61  PAVGLAAPQIGFNIKMYYIRIEETNDETGFKKIIEHAMINPKIIGKSAQIACIEEGEGCL 120

Query: 96  SIPD-YRADVKRSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           S+       V RS  I V   D    Q   I A    A   QHE  HL G L+ D ++  
Sbjct: 121 SVNGDKEGFVPRSFRIIVEGYDYLKQQQVTITARSYEAIVFQHEEAHLEGKLYYDLIN-- 178

Query: 154 KRDMITKK 161
           K++   KK
Sbjct: 179 KKEPWLKK 186


>gi|255974264|ref|ZP_05424850.1| peptide deformylase [Enterococcus faecalis T2]
 gi|255967136|gb|EET97758.1| peptide deformylase [Enterococcus faecalis T2]
          Length = 89

 Score = 88.2 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 2  VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
          ++ P+VI P+  L+  ++P+  I  +I+ L+++M E M + DGIGLAA QIG   ++ VI
Sbjct: 1  MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60

Query: 62 DLQDHAHRKNPMVFINPKIITFSD 85
          ++ + + R      INP II   +
Sbjct: 61 EIDEESGR---FELINPVIIEKKE 81


>gi|295106023|emb|CBL03566.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 139

 Score = 87.8 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 12/147 (8%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K LV   + IL +        ++ +   + + L  +       LAA QIGV   ++V 
Sbjct: 1   MIKELVT-DEAILSQPCETATAEDAVVAQDLLDTLASLDEAAC--LAANQIGVAKAVIVY 57

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NAQ 120
               H   + P V  NP +      +    EGCL++      V R   + V Y +  +  
Sbjct: 58  ----HDENEQPHVMYNPVLKQALGAYKTV-EGCLTLESES-KVTRYERVKVVYDELVDGA 111

Query: 121 HQIIYAD--GLLATCLQHELDHLNGIL 145
                 D  G  A  +QH +DH  G L
Sbjct: 112 LVSRKRDFTGWTAELIQHMIDHCKGKL 138


>gi|229815989|ref|ZP_04446311.1| hypothetical protein COLINT_03043 [Collinsella intestinalis DSM
           13280]
 gi|229808448|gb|EEP44228.1| hypothetical protein COLINT_03043 [Collinsella intestinalis DSM
           13280]
          Length = 153

 Score = 87.0 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60
           + K LV   + IL     P    +++I     ++++ + S  D   LAA QIGV   +  
Sbjct: 15  MIKELVK-DEAILSTPCEPATAADAEIAQ---DLVDTLLSIEDAACLAANQIGVTKAICA 70

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY---MDC 117
           +         N +V  NPK++     F   +E CL+       V R   I V Y   +D 
Sbjct: 71  L----ADDEGNTLVMYNPKVLFGMGAFKA-EESCLTREG-SVRVTRFVKIKVAYDELVDG 124

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGIL 145
             + +        A  +QH  DH  G L
Sbjct: 125 EFKPRKRDFVEWPAELIQHMCDHCQGKL 152


>gi|302766599|ref|XP_002966720.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii]
 gi|300166140|gb|EFJ32747.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii]
          Length = 277

 Score = 87.0 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 36/137 (26%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V++ DP LR  +  I   +  +  L   ML+V Y  DG+GL+A Q+GV  RL+V     
Sbjct: 144 IVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARLMVF---- 196

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                      NP+      +    +E             R     ++  D N +     
Sbjct: 197 -----------NPE-----GERGKGKED------------RY-RSELKAQDINGKKFGTA 227

Query: 126 ADGLLATCLQHELDHLN 142
             G  A   +HE DHL 
Sbjct: 228 FRGWTAGIFRHEYDHLE 244


>gi|118096630|ref|XP_001232975.1| PREDICTED: similar to Component of oligomeric golgi complex 8
           [Gallus gallus]
          Length = 677

 Score = 85.1 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 66  HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
            AHR  P    + ++P +           EG  SI  + A V R     V  +D N    
Sbjct: 575 RAHRIEPFPLRLLVSPALRVRDGRRGTAPEGGASIRGFAAGVPRRGAGHVSGVDENGDPV 634

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151
              A G  A  +QHE+DHL+G+LFID + 
Sbjct: 635 SWEATGWAARIVQHEMDHLDGVLFIDRMD 663


>gi|315931998|gb|EFV10951.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 327]
          Length = 74

 Score = 84.7 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 46/73 (63%)

Query: 2  VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
          + + ++ +P+P L   S  + K ++++  L+D+M E M +++G+GLAA+Q+ +  R++++
Sbjct: 1  MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60

Query: 62 DLQDHAHRKNPMV 74
          ++ D    +   +
Sbjct: 61 NIFDENDEQKKKI 73


>gi|207110973|ref|ZP_03245135.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 72

 Score = 84.3 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+ +++ A  LLA 
Sbjct: 2   LEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAV 60

Query: 133 CLQHELDHLNGI 144
            +QHE+DHLNG+
Sbjct: 61  AIQHEIDHLNGV 72


>gi|328955181|ref|YP_004372514.1| formylmethionine deformylase [Coriobacterium glomerans PW2]
 gi|328455505|gb|AEB06699.1| formylmethionine deformylase [Coriobacterium glomerans PW2]
          Length = 139

 Score = 84.3 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVV 60
           + K LV     +L + ++P    ++    L  ++L+ + S +  G LAA QIG L  + V
Sbjct: 1   MIKELVR-DQALLSQPAKPATAEDA---ALAKDLLDTLASLEHAGCLAANQIGALKAICV 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NA 119
                   R  P V  NP+++ F    S  +E CL+       V R A + +++ +  + 
Sbjct: 57  Y----SDERNEPHVMFNPRLL-FGLGASKMREECLT-KSEPVTVTRYAKVKIQFDELADG 110

Query: 120 --QHQIIYADGLLATCLQHELDHLNGIL 145
             + +     G  A  +QH +DH  G L
Sbjct: 111 ALKTRKRDFTGYTAQMIQHMIDHCRGRL 138


>gi|207108487|ref|ZP_03242649.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 77

 Score = 84.3 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 44/72 (61%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
          M    ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++
Sbjct: 1  MALLEIIHYPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60

Query: 61 IDLQDHAHRKNP 72
          I+L      ++ 
Sbjct: 61 INLPQEDGVQHK 72


>gi|196019297|ref|XP_002118957.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens]
 gi|190577546|gb|EDV18557.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens]
          Length = 395

 Score = 84.0 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 15/106 (14%)

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR--------ADVKRSAFITVRYM 115
            D    + P  F+NPKI    ++  V  EGCLS+P           ++VKR   I + Y+
Sbjct: 50  PDLVIERKPYFFLNPKIKLNHNNEIVLPEGCLSVPMESIFKEYNGNSNVKRPEVIEIEYI 109

Query: 116 DCNAQHQIIYADG-------LLATCLQHELDHLNGILFIDHLSRLK 154
           + N + +I+  DG         + C QHE DHL+G+LF+D L + K
Sbjct: 110 NENLEKEIMKIDGSKDDYWKWFSRCAQHENDHLDGVLFVDRLEKEK 155



 Score = 48.5 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 15/93 (16%)

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP--------DYRADVKRSAFITVRYMD 116
           D    + P  F+NPKI        +  EG  S+P        +   +VKR+  I + Y++
Sbjct: 303 DLIIERKPYFFLNPKIKMDLTSRIILSEGTPSVPMEIIDKKYNGSTNVKRACNIELEYLN 362

Query: 117 CNAQHQIIYADG-------LLATCLQHELDHLN 142
              + +++   G         + C QHE D+L 
Sbjct: 363 EKLERKVMKIQGDRHDYWKWFSRCAQHEYDYLE 395



 Score = 40.0 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
           ML  MY   GIG+ A+Q+G   R  ++D+ 
Sbjct: 193 MLSTMYGFSGIGIGAMQVGAPIRAFIVDIP 222


>gi|302803460|ref|XP_002983483.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii]
 gi|300148726|gb|EFJ15384.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii]
          Length = 157

 Score = 84.0 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 17/110 (15%)

Query: 3   KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           K  +V   DP+L   +R +   E  +  + N I  +++ M     +GLAA QIGV  +++
Sbjct: 47  KLEIVQAGDPVLHEAAREVLHSEVSSDTVQNTIQGLIDAMREAPAVGLAAPQIGVPLQII 106

Query: 60  VID--------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL 95
           V++              L         +V INP +   +   + + EGCL
Sbjct: 107 VLEDTAEYISYVSRDEALSQQRKPFELLVIINPILRPTTSATARFFEGCL 156


>gi|302335150|ref|YP_003800357.1| formylmethionine deformylase [Olsenella uli DSM 7084]
 gi|301318990|gb|ADK67477.1| formylmethionine deformylase [Olsenella uli DSM 7084]
          Length = 139

 Score = 83.6 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 13  ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLVVIDLQDHAHRKN 71
           +L +        ++ +     ++++ M S + +G LAA QIGV  +++     D      
Sbjct: 11  VLSQRCERATAEDAVVAW---DLIDTMDSLEDVGCLAANQIGVAKQVIAYRDDDQVVH-- 65

Query: 72  PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NA--QHQIIYADG 128
             V  NP+I+      S  +EGCL+       V R A + V + +      + +     G
Sbjct: 66  --VMYNPRIM-MGLGASKLEEGCLTREG-TVRVTRYAKVKVSFDELVEGSLKARRRDYTG 121

Query: 129 LLATCLQHELDHLNGIL 145
            +A  +QH  DH NG L
Sbjct: 122 WVAEMIQHMCDHCNGKL 138


>gi|145509567|ref|XP_001440722.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407950|emb|CAK73325.1| unnamed protein product [Paramecium tetraurelia]
          Length = 237

 Score = 82.4 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 6/172 (3%)

Query: 1   MVKKPLVIFPDPI---LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +++F D +   L          N    + ++ M           LAA Q+G+   
Sbjct: 1   MA--NIIVFGDKLSNALFSKCIYYGAFNKRFYSKVNQMKLAAVDKRIRILAANQVGLEQN 58

Query: 58  LVVIDLQDHAHRK-NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           L ++  Q          V INPKI+  S++     E  +S P ++A V R   I V Y D
Sbjct: 59  LFIMLPQSSKMIPSEYKVIINPKILKISNEVIENTEESISFPQFKAKVNRYKTIFVSYDD 118

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +       GL +   Q  +D + GI  I  ++   +  +  +  K  +L
Sbjct: 119 KKGKTVEEELKGLESIWYQQAIDQVMGIPCISWIASQGKVELKPEYQKQAEL 170


>gi|209732808|gb|ACI67273.1| Peptide deformylase, mitochondrial precursor [Salmo salar]
          Length = 112

 Score = 82.4 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 37/78 (47%)

Query: 74  VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133
           +FIN ++         +QE C SI  + A V     + V  ++  A+       G     
Sbjct: 22  IFINHQLRVLDGRTVKFQEACESISGFSATVPHYLSVEVSGLNEKAEPVTWQVSGWPVRN 81

Query: 134 LQHELDHLNGILFIDHLS 151
           LQHE+DHL+G+ +ID + 
Sbjct: 82  LQHEMDHLDGVWYIDRMD 99


>gi|313239302|emb|CBY14250.1| unnamed protein product [Oikopleura dioica]
          Length = 1132

 Score = 82.0 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 26/169 (15%)

Query: 8   IFPDPILRRVSRPI-------------EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54
           +  DP+LR+ +                E  N  IM  +  M   M++  G  + A Q+G+
Sbjct: 13  LIGDPVLRQPAADFDVNVYNSVDMKTFENHNPAIMKSLAKME--MFAQYGWVITAPQVGL 70

Query: 55  LYRLVVI----DLQDHA------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104
             +++++     L D         +    VF NP+I   +++ +   E  LSIP     +
Sbjct: 71  PIKIMLVQLHLGLDDDGFTIKGTDKTKNYVFANPEIRPLTNEKAFSIESSLSIPALSGVL 130

Query: 105 KRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152
           +R   I +   D  A+  + +      +  +Q+ +D LNG++FID ++ 
Sbjct: 131 ERHQLIELTAYDLAARRVVKMTLSPPDSFMVQNAVDQLNGVMFIDKVTD 179


>gi|307706187|ref|ZP_07643005.1| polypeptide deformylase family protein [Streptococcus mitis SK321]
 gi|307618447|gb|EFN97596.1| polypeptide deformylase family protein [Streptococcus mitis SK321]
          Length = 108

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 45/146 (30%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVV 60
            K ++      L +VS+P  + +   + L  ++ + + +     +GLAA  IGV  R+++
Sbjct: 6   VKDILF-----LSQVSQPASQED---LYLARDLQDTLLANREICVGLAANMIGVQKRVII 57

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +L        P+V  NP +++    +   +EGCLS+                       
Sbjct: 58  FNLG-----LVPVVMFNPVLLSSEGAYET-EEGCLSL----------------------- 88

Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146
                  G  A   QHELDHL G + 
Sbjct: 89  ------TGFPAQICQHELDHLEGRII 108


>gi|295108734|emb|CBL22687.1| N-formylmethionyl-tRNA deformylase [Ruminococcus obeum A2-162]
          Length = 77

 Score = 80.5 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +V  NP I++  D +   +EGCLS+   R    R   I V Y D N + +     G  A 
Sbjct: 6   VVMFNPVIVSKRDMYET-EEGCLSLDGVR-KTTRYQEIEVEYYDFNWKKKRQRLSGWTAQ 63

Query: 133 CLQHELDHLNGILF 146
             QHE+DHL+G + 
Sbjct: 64  ICQHEIDHLSGKII 77


>gi|77409500|ref|ZP_00786189.1| polypeptide deformylase [Streptococcus agalactiae COH1]
 gi|77171884|gb|EAO75064.1| polypeptide deformylase [Streptococcus agalactiae COH1]
          Length = 163

 Score = 80.5 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 15/123 (12%)

Query: 2   VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58
           + KP+V   D   L++ S+   + +   ++L  ++ + +++     +G+AA  IG L R+
Sbjct: 1   MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSLKRV 55

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++I++         +V  NP ++  SD +   +E CLS+   R+  +R   IT+ Y D N
Sbjct: 56  IIINVGITN-----LVMFNPVLVAKSDPYET-EESCLSLVGCRS-TQRYHHITISYRDIN 108

Query: 119 AQH 121
            + 
Sbjct: 109 XER 111


>gi|165933262|ref|YP_001650051.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|165908349|gb|ABY72645.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
          Length = 119

 Score = 80.1 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 35  IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 94

Query: 66  HAHRKNPMVFINPKIITFSDDFSVY 90
           + ++ +P+VFINP I  FS++   +
Sbjct: 95  N-NKSSPIVFINPDITYFSEETQTF 118


>gi|149184142|ref|ZP_01862470.1| peptide deformylase [Bacillus sp. SG-1]
 gi|148848148|gb|EDL62470.1| peptide deformylase [Bacillus sp. SG-1]
          Length = 86

 Score = 79.7 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 87  FSVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +    EGCLS+       V R + +T++ MD +     I   GL +  +QHE+DHLNG++
Sbjct: 5   YLTSGEGCLSVDRQVPGYVPRYSRVTIKGMDIDGNPVKIRLKGLPSIVMQHEIDHLNGVM 64

Query: 146 FIDHLS 151
           F DH+ 
Sbjct: 65  FYDHID 70


>gi|157828546|ref|YP_001494788.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|157801027|gb|ABV76280.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila
          Smith']
          Length = 94

 Score = 79.3 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 6  LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
          +V  P+ I ++ +  I+ ++ +I  ++D ML+ ++    +GL A  +G+L R+ V+DL +
Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69

Query: 66 HAHRKNPMVFINPKIITFSDDFSVY 90
          + ++ +P+VFINP I  FS++   +
Sbjct: 70 N-NKSSPIVFINPDITYFSEETQTF 93


>gi|9957264|gb|AAG09295.1|AF177768_1 ORF260 [Trypanosoma brucei]
 gi|261335512|emb|CBH18506.1| polypeptide deformylase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 260

 Score = 79.3 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109
            +   ++ ++ H +  N  V++NP +  + D  S+       E C+S     A V R   
Sbjct: 92  HWDAAIVLIKGHPNEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQS 151

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           IT   +D     +    DG+ A CL HELDHL+G   +D
Sbjct: 152 ITCSGLDEYGNEKTEVLDGMRARCLMHELDHLSGKTILD 190


>gi|290476474|ref|YP_003469379.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
 gi|289175812|emb|CBJ82615.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004]
          Length = 62

 Score = 79.3 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 39/59 (66%)

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            V  +D + +  ++ ++  L+  +QHE+DHLNGI+FID+LS LKR M  KK+ K +  +
Sbjct: 2   KVEALDRHGKAMVVESEDFLSIVMQHEIDHLNGIVFIDYLSPLKRQMALKKVKKFLSNK 60


>gi|74025884|ref|XP_829508.1| polypeptide deformylase [Trypanosoma brucei TREU927]
 gi|70834894|gb|EAN80396.1| polypeptide deformylase, putative [Trypanosoma brucei]
          Length = 260

 Score = 78.2 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109
            +   ++ ++ H +  N  V++NP +  + D  S+       E C+S     A V R   
Sbjct: 92  HWDAAIVLIKGHPNEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQS 151

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
           IT   +D     +    DG+ A CL HELDHL+G   +D
Sbjct: 152 ITCSGLDEYGNEKTEVLDGMRARCLMHELDHLSGRTILD 190


>gi|38141771|dbj|BAD00707.1| putative polypeptide deformylase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 152

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 25/135 (18%)

Query: 5   PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
            ++   +P LR V++ +E  ++ D + L + M++ +  +             G+GLAA Q
Sbjct: 18  DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77

Query: 52  IGVLYRLVVIDLQ-DHAHRKNP--------MVFINPKIITFS--DDFSVYQEGCLSIPD- 99
           I V  R++ + +        NP         V  NPKI++ S  D      EGCLS+   
Sbjct: 78  IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137

Query: 100 YRADVKRSAFITVRY 114
               V R A +TV Y
Sbjct: 138 VEGYVVRHARVTVEY 152


>gi|322494221|emb|CBZ29518.1| putative polypeptide deformylase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 271

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109
            +   VI ++ +   K   V++NP +  + D  +V       E C+S     A V R   
Sbjct: 103 HWDAAVILIKGNPDEKEYEVWVNPLVPGYDDRDAVAPMYGMWENCISCGTATAWVVRPQR 162

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           IT    D +  H++   DG+ A CL HELDHL G    
Sbjct: 163 ITCSGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200


>gi|139438035|ref|ZP_01771588.1| Hypothetical protein COLAER_00575 [Collinsella aerofaciens ATCC
           25986]
 gi|133776232|gb|EBA40052.1| Hypothetical protein COLAER_00575 [Collinsella aerofaciens ATCC
           25986]
          Length = 143

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 15/151 (9%)

Query: 1   MVKKPL--VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYR 57
           M ++ +  +   + IL +        +  +     ++++ + S D  G LAA QIGV  +
Sbjct: 1   MEERMIKELCHDEAILSQRCEVATVEDESVAQ---DLIDTIKSLDDAGCLAANQIGVTKK 57

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY--- 114
           + V           P V  NP+++ F    S  +E CL+  +      R     V +   
Sbjct: 58  VCVY----LDDAGEPHVLYNPRLV-FGLGASKMEESCLTHEEVTKS-TRYIKCKVAFDQI 111

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
           +D   +       G  A  +QH +DH  G L
Sbjct: 112 VDGKMKECRRDYAGFEAQMIQHMIDHCLGKL 142


>gi|210630312|ref|ZP_03296375.1| hypothetical protein COLSTE_00259 [Collinsella stercoris DSM 13279]
 gi|210160520|gb|EEA91491.1| hypothetical protein COLSTE_00259 [Collinsella stercoris DSM 13279]
          Length = 139

 Score = 77.4 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 14/148 (9%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60
           + K LV   + IL       E   +   ++  ++++ + S  D   LAA QIGV   +V 
Sbjct: 1   MIKELV-HDEAILSTPC---EVATAADADVAQDLVDTLLSIEDAACLAANQIGVTKAIVA 56

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY---MDC 117
           +         N  V  NPK++     +   +E CL+       V R A I V Y   +D 
Sbjct: 57  L----ADDEGNAHVMFNPKVLFGMGAYKA-EESCLTREG-SVKVTRFAKIKVSYDELVDG 110

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGIL 145
             + +        A  +QH  DH NG L
Sbjct: 111 ELKPRKRDFVEWAAELIQHMCDHCNGKL 138


>gi|157873892|ref|XP_001685446.1| polypeptide deformylase-like protein [Leishmania major strain
           Friedlin]
 gi|68128518|emb|CAJ08650.1| putative polypeptide deformylase-like protein [Leishmania major
           strain Friedlin]
          Length = 271

 Score = 76.6 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109
            +   VI ++ +       V++NP +  + D  +V       E C+S     A V R   
Sbjct: 103 HWDAAVILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQR 162

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           IT    D +  H++   DG+ A CL HELDHL G    
Sbjct: 163 ITCSGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200


>gi|309805350|ref|ZP_07699400.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c]
 gi|308165350|gb|EFO67583.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c]
          Length = 95

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 92  EGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           EGCLS+  D +  V R+  + ++Y   + + + I   G  A    HE+DHLNG LF D +
Sbjct: 20  EGCLSVDKDIQGYVPRAYKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRI 79

Query: 151 SR 152
            +
Sbjct: 80  DK 81


>gi|322501785|emb|CBZ36867.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 271

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109
            +   VI ++ +       V++NP +  + D  +V       E C+S     A V R   
Sbjct: 103 HWDAAVILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQR 162

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           +T    D +  H++   DG+ A CL HELDHL G    
Sbjct: 163 VTCSGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200


>gi|146096471|ref|XP_001467816.1| polypeptide deformylase-like protein [Leishmania infantum JPCM5]
 gi|134072182|emb|CAM70883.1| putative polypeptide deformylase-like protein [Leishmania infantum
           JPCM5]
          Length = 271

 Score = 75.1 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109
            +   VI ++ +       V++NP +  + D  +V       E C+S     A V R   
Sbjct: 103 HWDAAVILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQR 162

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           +T    D +  H++   DG+ A CL HELDHL G    
Sbjct: 163 VTCSGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200


>gi|154343115|ref|XP_001567503.1| polypeptide deformylase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064835|emb|CAM42941.1| putative polypeptide deformylase-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 271

 Score = 74.3 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109
            +   V+ ++ +       V++NP +  + D  +V       E C+S     A V R   
Sbjct: 103 HWDAAVLLIKSNPDEVEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQR 162

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           IT R  + + + ++   DG+ A CL HELDHL G    
Sbjct: 163 ITCRGYNEHGREKVQVLDGMRARCLMHELDHLMGKTIF 200


>gi|224010171|ref|XP_002294043.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970060|gb|EED88398.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 549

 Score = 74.3 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 75/225 (33%), Gaps = 79/225 (35%)

Query: 5   PLVIFPDPILRRVSRPIE----KINSDIMNL---IDNMLEVMYSTDGIGLAAVQIGVLYR 57
           P+  +PDPILR  S P+       +  +  L      +         +GLAA Q GV   
Sbjct: 155 PMGRWPDPILRHSSSPVSSCVFNNDHQLKQLQLVARALRNTARKEGAVGLAAQQCGVDGS 214

Query: 58  LVVID------------------------------------LQDHAHRKNPMVFIN---- 77
           LV ID                                    +       + +  IN    
Sbjct: 215 LVFIDGIKKTHRSINQQLEMSFGELLDGAFGQRSWRNSKKEVSGEGAYDDDIFAINKLSL 274

Query: 78  -----------------PKIITFS--DDFSVYQEGCLSIPD-YRADVKRSAFITVRYMDC 117
                            P+I+  S   +  V+ E CL +P  +RA + R A +T+ Y   
Sbjct: 275 TKQQPQREAEGGVFLVNPRIVHRSTESEMLVWTEECLVLPPVFRATLVRDAEVTIEYESL 334

Query: 118 N------------AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
                           + I   G LA C QHE+DH  G+L +DH+
Sbjct: 335 ETLDESSPGDSLCGVTKQITLKGELARCAQHEMDHDRGVLIVDHV 379


>gi|289676937|ref|ZP_06497827.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 79

 Score = 73.9 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 2  VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
          +   ++   D  L R++ P+      +S++  LI +M E M+S  G+GLAA QIG+  +L
Sbjct: 1  MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60

Query: 59 VVIDLQDHAHRK 70
          V+   + +    
Sbjct: 61 VIFGFERNERYP 72


>gi|299116828|emb|CBN74940.1| dubious peptide deformylase [Ectocarpus siliculosus]
          Length = 97

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            V+R  ++ V  ++   +          A   QHE DHL+G ++IDHLS  +R+ +   +
Sbjct: 25  QVERRNWVKVEAVNAKGKKVKKKYTDWTARIFQHEYDHLDGTVYIDHLSPPEREKVQPVL 84

Query: 163 SKLV 166
            KLV
Sbjct: 85  DKLV 88


>gi|255018922|ref|ZP_05291048.1| peptide deformylase [Listeria monocytogenes FSL F2-515]
          Length = 65

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             V RS  +T+   D N     +   G  A  +QHE+DHLNGI+F DH+++ 
Sbjct: 1   GYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 52


>gi|213425785|ref|ZP_03358535.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213618713|ref|ZP_03372539.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 53

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 35/49 (71%)

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 1   NPFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 49


>gi|145530309|ref|XP_001450932.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418565|emb|CAK83535.1| unnamed protein product [Paramecium tetraurelia]
          Length = 282

 Score = 72.8 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 9/146 (6%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH---- 66
           D  L   +  +  ++S     ++N+L  M + +   L+A Q+GV  R   I  Q      
Sbjct: 34  DDCLFYSADLVMNLSSRKKKDMNNLLFTMQTLEIPYLSANQVGVEDRYFGIMFQKQNFKW 93

Query: 67  ----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                     ++ +NP +++ S+  S+  E  +  P  R+ ++R   I + +       Q
Sbjct: 94  SLIEEKNLEKLLCVNPLVVSVSETTSIDWETNICFPFIRSQIERYDRIRLHFQTLE-DEQ 152

Query: 123 IIYADGLLATCLQHELDHLNGILFID 148
               +G  A  +Q  +D LNG   ID
Sbjct: 153 EFEFEGFNARVVQQAIDSLNGYQIID 178


>gi|289677569|ref|ZP_06498459.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5]
          Length = 47

 Score = 72.0 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL 47
          M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGL
Sbjct: 1  MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGL 47


>gi|146318043|ref|YP_001197755.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33]
 gi|145688849|gb|ABP89355.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33]
          Length = 70

 Score = 72.0 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
             NP II+ +  +   +EGCLS+   R    R   I V + D + +   +      A  +
Sbjct: 1   MYNPVIISKAKPYQT-EEGCLSLEGTR-PTTRYQEIEVEFFDASWKKISLKLTDFQAQIV 58

Query: 135 QHELDHLNGILF 146
           QHELDHL GI+ 
Sbjct: 59  QHELDHLEGIII 70


>gi|302765893|ref|XP_002966367.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii]
 gi|300165787|gb|EFJ32394.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii]
          Length = 340

 Score = 71.6 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 49/133 (36%), Gaps = 42/133 (31%)

Query: 21  IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80
           I   + ++  L   ML+V Y  DGIGL   Q+GV  RL+V                NP+ 
Sbjct: 62  INSFDDNVKKL---MLDVTYRRDGIGLLTPQLGVNARLMVF---------------NPE- 102

Query: 81  ITFSDDFSVYQEGCLSIPDYRADVKRSA-FITVRYMDCNAQHQIIYADGLLATCLQHELD 139
                               R   KR      ++  D N +          A   +HE D
Sbjct: 103 ------------------GERGKGKRDRYRSELKSQDINGKK----YGSWTARIFRHEYD 140

Query: 140 HLNGILFIDHLSR 152
           HL G+L+ID ++ 
Sbjct: 141 HLEGVLYIDQMTP 153


>gi|146076416|ref|XP_001462921.1| metalloprotease-like protein [Leishmania infantum]
 gi|134067002|emb|CAM65107.1| metalloprotease-like protein [Leishmania infantum JPCM5]
 gi|322496349|emb|CBZ31420.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 393

 Score = 70.5 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 19/123 (15%)

Query: 47  LAAVQIGVLYRLVV----------IDLQDHAHRKNP-------MVFINPKIITFSDDFSV 89
           ++A Q G   ++            ++L + A R          + F   K+     +   
Sbjct: 151 MSAPQTGWNVQMFTLFDNSVFINPVNLDEEAWRAEAAQQGMSWVAFEEEKMRELRTEGLT 210

Query: 90  Y--QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
               E C S       ++R   + VR +D + +   +  D + A    HELDHL G+LF 
Sbjct: 211 GFAWEPCASSGFLLHYIERPLTVRVRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFT 270

Query: 148 DHL 150
             +
Sbjct: 271 RRV 273


>gi|258513851|ref|YP_003190073.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
 gi|257777556|gb|ACV61450.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
          Length = 74

 Score = 70.1 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 9/81 (11%)

Query: 1  MVKKPLVIF-PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
          M  + ++ +  + ILR+ +R IEK  + I+  + NM E MY+ +  GLAA Q+ +L RLV
Sbjct: 1  MALRNIMNYQTNDILRKKTRTIEKFYNRILTSLKNMAETMYNANETGLAATQVAILRRLV 60

Query: 60 VIDLQDHAHRKNPMVFINPKI 80
          VID+   +        INP I
Sbjct: 61 VIDVGTGS--------INPVI 73


>gi|71654685|ref|XP_815957.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL
           Brener]
 gi|70881052|gb|EAN94106.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi]
          Length = 260

 Score = 70.1 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109
            +   V+ ++ H   +   V+++P +  +    S+       E C+S     A V R   
Sbjct: 92  HWDATVVLIKGHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQC 151

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           +T    D     +    DG+ A CL HELDHL+G   +
Sbjct: 152 VTCSGWDEYGNEKTELLDGMRARCLMHELDHLHGKTIL 189


>gi|167950137|ref|ZP_02537211.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 80

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQ 51
          M    ++  PDP L++ S  +E+ +  +   ID++ E   +    +G+AA Q
Sbjct: 1  MAILEILKLPDPRLKQPSELVEQFDDALRAFIDDLEETRVNGPAAVGIAAPQ 52


>gi|71413918|ref|XP_809080.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL
           Brener]
 gi|70873406|gb|EAN87229.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi]
          Length = 260

 Score = 68.9 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109
            +   V+ ++ H   +   V+++P +  +    S+       E C+S     A V R   
Sbjct: 92  HWDATVVLIKSHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQS 151

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           +T    D     +    DG+ A CL HELDHL+G   +
Sbjct: 152 VTCSGWDEYGNEKTELLDGMRARCLMHELDHLHGKTIL 189


>gi|34101051|gb|AAQ57593.1| putative peptide deformylase [Trypanosoma brucei]
          Length = 366

 Score = 68.9 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 35/133 (26%)

Query: 47  LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINP---------------------------K 79
           L A +IG   ++  +         +  VFINP                           +
Sbjct: 114 LCAPKIGWNVQMFTL--------FDGTVFINPINLDALEVEEIAKQKSITFVEAEALWME 165

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
                       E C S       ++R + + VR +  +     +  D + A    HELD
Sbjct: 166 KKRREGKTCFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELD 225

Query: 140 HLNGILFIDHLSR 152
           HLNGILF   +  
Sbjct: 226 HLNGILFTRRIPD 238


>gi|71745056|ref|XP_827158.1| metalloprotease-like protein [Trypanosoma brucei TREU927]
 gi|70831323|gb|EAN76828.1| metalloprotease-like protein [Trypanosoma brucei]
          Length = 366

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 35/133 (26%)

Query: 47  LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINP---------------------------K 79
           L A +IG   ++  +         +  VFINP                           +
Sbjct: 114 LCAPKIGWNVQMFTL--------FDGTVFINPINLDALEVEEIAKQKSITFVEAEALWME 165

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
                       E C S       ++R + + VR +  +     +  D + A    HELD
Sbjct: 166 KKRREGKTCFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELD 225

Query: 140 HLNGILFIDHLSR 152
           HLNGILF   +  
Sbjct: 226 HLNGILFTRRIPD 238


>gi|261331378|emb|CBH14372.1| metalloprotease-like protein [Trypanosoma brucei gambiense DAL972]
          Length = 366

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 35/133 (26%)

Query: 47  LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINP---------------------------K 79
           L A +IG   ++  +         +  VFINP                           +
Sbjct: 114 LCAPKIGWNVQMFTL--------FDGTVFINPINLDTLEVEEIAKQKSITFVEAEALWME 165

Query: 80  IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
                       E C S       ++R + + VR +  +     +  D + A    HELD
Sbjct: 166 KKRREGKTCFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELD 225

Query: 140 HLNGILFIDHLSR 152
           HLNGILF   +  
Sbjct: 226 HLNGILFTRRIPD 238


>gi|322816071|gb|EFZ24514.1| metalloprotease-like protein, putative [Trypanosoma cruzi]
          Length = 366

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 39/151 (25%)

Query: 33  DNMLEVMYSTDGI----GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF----- 83
             M+E + +         L A QIG   ++  +         +  VFINP  +       
Sbjct: 99  AEMIERVRAARQYYQYPSLCAPQIGWNVQMFTL--------FDGSVFINPVNLDLLEVEA 150

Query: 84  ----------------------SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                                         E C S       ++R A + +R +  +   
Sbjct: 151 AGTRSGMPIAEAEAQWVASCRREGKTCFAWEPCASCCFLMHYIERPATVRIRAIGADGHP 210

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +  + + A    HELDHL+G+LF   +  
Sbjct: 211 FEVTLEKMRARMALHELDHLSGVLFTRRIPD 241


>gi|71419099|ref|XP_811066.1| metalloprotease-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70875688|gb|EAN89215.1| metalloprotease-like protein, putative [Trypanosoma cruzi]
          Length = 366

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 39/151 (25%)

Query: 33  DNMLEVMYSTDGI----GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF----- 83
             M+E + +         L A QIG   ++  +         +  VFINP  +       
Sbjct: 99  AEMIERVRAARQYYQYPSLCAPQIGWNVQMFTL--------FDGSVFINPVNLDLLEVEA 150

Query: 84  ----------------------SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                                         E C S       ++R A + +R +  +   
Sbjct: 151 AGSRSGMPIAEAEAQWVASCRREGKTCFAWEPCASCCFLMHYIERPATVRIRAIGADGHP 210

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152
             +  + + A    HELDHL+G+LF   +  
Sbjct: 211 FEVTLEKMRARMALHELDHLSGVLFTRRIPD 241


>gi|321399682|emb|CAC22626.2| putative peptide deformylase [Leishmania major strain Friedlin]
          Length = 501

 Score = 68.2 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 22/168 (13%)

Query: 5   PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           P++  P   L  R+ +    ++   +   LI  + E  +      ++A Q G   ++   
Sbjct: 214 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVREARHYYQYPSMSAPQTGWNVQMFTL 273

Query: 61  ---------IDLQDHAHRKNP-------MVFINPKIITFSDDFSVY--QEGCLSIPDYRA 102
                    ++L +   R          + F   K+     +       E C S      
Sbjct: 274 FDNSVFINPVNLDEEVWRAEAARQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFLLH 333

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++R   + +R +D + +   +  D + A    HELDHL G+LF   +
Sbjct: 334 YIERPLTVRMRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFTRRV 381


>gi|76363764|ref|XP_888591.1| hypothetical protein [Leishmania major strain Friedlin]
          Length = 501

 Score = 68.2 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 22/168 (13%)

Query: 5   PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           P++  P   L  R+ +    ++   +   LI  + E  +      ++A Q G   ++   
Sbjct: 214 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVREARHYYQYPSMSAPQTGWNVQMFTL 273

Query: 61  ---------IDLQDHAHRKNP-------MVFINPKIITFSDDFSVY--QEGCLSIPDYRA 102
                    ++L +   R          + F   K+     +       E C S      
Sbjct: 274 FDNSVFINPVNLDEEVWRAEAARQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFLLH 333

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++R   + +R +D + +   +  D + A    HELDHL G+LF   +
Sbjct: 334 YIERPLTVRMRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFTRRV 381


>gi|169840242|ref|ZP_02873430.1| Peptide deformylase [candidate division TM7 single-cell isolate
          TM7a]
          Length = 71

 Score = 68.2 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 6  LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
          +V++  P LR   R  ++++ ++   +D M+ +M   +G+GLAA Q+ +  R  V++   
Sbjct: 4  IVLYGHPTLREK-RKSDEVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLEHDG 62

Query: 66 HAHR 69
             +
Sbjct: 63 ILKK 66


>gi|239792061|dbj|BAH72415.1| ACYPI003516 [Acyrthosiphon pisum]
          Length = 119

 Score = 68.2 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 16/92 (17%)

Query: 6   LVIFPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
           +V   DP+LR  + P+  EKI   ++ NLI  M  +M  ++ IGLAA Q+G+ +++ VI 
Sbjct: 27  VVQIGDPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIH 86

Query: 63  LQDHAH-------------RKNPMVFINPKII 81
               +H                  V+INP+++
Sbjct: 87  FPRPSHYFSKEEILLKGMEHVENHVWINPELM 118


>gi|322488070|emb|CBZ23315.1| unnamed protein product [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 401

 Score = 67.8 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 22/168 (13%)

Query: 5   PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           P++  P   L  R+ +    ++   +   LI  + E  +      ++A Q G   ++   
Sbjct: 114 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVKEARHYYQYPSMSAPQTGWNVQMFTL 173

Query: 61  ---------IDLQDHAHRKNP-------MVFINPKIITFSDDFSVY--QEGCLSIPDYRA 102
                    ++L + A R          + F   K+     +       E C S      
Sbjct: 174 FDNSVFINPVNLDEVAWRAEAAQQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFLLH 233

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            ++R   + VR +D + +   +  D + A    HELDHL G+LF   +
Sbjct: 234 YIERPLTVRVRALDEHGKAFTVTLDKMRARMSLHELDHLQGVLFTRRV 281


>gi|318077239|ref|ZP_07984571.1| hypothetical protein SSA3_11078 [Streptomyces sp. SA3_actF]
          Length = 92

 Score = 67.8 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132
           +  +NP++I  S + +   E C           R   ITVR                LA 
Sbjct: 6   VTLLNPRVIAGSRETAEEYESCPGRLGPGTPTSRPNEITVRTTTLTGHPLTTTYTQPLAR 65

Query: 133 CLQHELDHLNGILFIDHLS 151
            + HE+DHL G+L   HL 
Sbjct: 66  LVHHEIDHLKGLLHPPHLP 84


>gi|71422988|ref|XP_812306.1| metalloprotease-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70877072|gb|EAN90455.1| metalloprotease-like protein, putative [Trypanosoma cruzi]
          Length = 366

 Score = 67.8 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 35/133 (26%)

Query: 47  LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF----------------------- 83
           L A QIG   ++  +         +  VFINP  +                         
Sbjct: 117 LCAPQIGWNVQMFTL--------FDGSVFINPVNLDLLELEAAGSRSGMPIAEAEAQWVA 168

Query: 84  ----SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139
                       E C S       ++R A + +R +  +     +  + + A    HELD
Sbjct: 169 SCRREGKTCFAWEPCASCCFLMHYIERPATVRIRAIGADGHPFEVTLEKMRARMALHELD 228

Query: 140 HLNGILFIDHLSR 152
           HL G+LF   +  
Sbjct: 229 HLGGVLFTRRIPD 241


>gi|169838490|ref|ZP_02871678.1| hypothetical protein cdivTM_15541 [candidate division TM7
           single-cell isolate TM7a]
          Length = 118

 Score = 67.4 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           S+F   + +  + +   I A+G LA  LQHE+DH NGI+FIDH+ + K+D   K
Sbjct: 32  SSFYENKIIRTDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 84


>gi|149378482|ref|ZP_01896166.1| peptide deformylase [Marinobacter algicola DG893]
 gi|149357233|gb|EDM45771.1| peptide deformylase [Marinobacter algicola DG893]
          Length = 43

 Score = 67.4 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 2  VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG 44
          +   ++ +PDP LR +++P++++  +   LID+M E MY   G
Sbjct: 1  MILDILEYPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPG 43


>gi|322821869|gb|EFZ28075.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi]
          Length = 260

 Score = 67.4 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 55  LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV-----YQEGCLSIPDYRADVKRSAF 109
            +   V+ ++ H   +   V+++P +  +    S+       E C+S     A V R   
Sbjct: 92  HWDATVVLIKSHPDEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQS 151

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
           +T    D     +     G+ A CL HELDHL+G   +
Sbjct: 152 VTCSGWDEYGNEKTELLGGMRARCLMHELDHLHGKTIL 189


>gi|295838352|ref|ZP_06825285.1| formylmethionine deformylase [Streptomyces sp. SPB74]
 gi|295826974|gb|EDY42785.2| formylmethionine deformylase [Streptomyces sp. SPB74]
          Length = 289

 Score = 67.0 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 18  SRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           +RP+ + +              I  ++D +L +    +G+GL+A QIG+     ++    
Sbjct: 136 ARPVTEFDLPREREEATRTVRAIEAVLDRVLRLCPFPEGVGLSAPQIGIPRAAALVQPPW 195

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
            A     ++ +NP++   S + +     C   P  R  V+    ITV             
Sbjct: 196 GAPA---VILLNPRVTATSRETTESVATCPGHPAPRPPVRHPRDITVATTTLTGHPLSAT 252

Query: 126 ADGLLATCLQHELDH 140
               L+  + HE+ H
Sbjct: 253 YTHPLSHLVHHEIGH 267


>gi|330952314|gb|EGH52574.1| peptide deformylase [Pseudomonas syringae Cit 7]
          Length = 45

 Score = 67.0 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI 45
          M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GI
Sbjct: 1  MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGI 45


>gi|90961343|ref|YP_535259.1| peptide deformylase [Lactobacillus salivarius UCC118]
 gi|90820537|gb|ABD99176.1| Peptide deformylase [Lactobacillus salivarius UCC118]
          Length = 103

 Score = 66.6 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM--YSTDGIGLAAVQIGVLYRLV 59
           + + +      IL + S P  K +   + ++ ++++ +  +    +G+AA  IG    ++
Sbjct: 1   MIRDI-NHDVKILSKKSTPASKND---IAIVQDLVDTLNYHRDHCVGMAANMIGKNKCII 56

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
                        +  INP I   S  +S   EGCLS+   R +  R   I V 
Sbjct: 57  ACQFGPLI-----VAMINPVITKKSQKYSTS-EGCLSLTGER-ETTRFNKIEVS 103


>gi|324017857|gb|EGB87076.1| conserved domain protein [Escherichia coli MS 117-3]
          Length = 48

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 1   EADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 45


>gi|149411900|ref|XP_001510213.1| PREDICTED: similar to bromodomain adjacent to zinc finger domain,
           1A [Ornithorhynchus anatinus]
          Length = 200

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 101 RADVKRSAFITV--RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             D  R+    V   ++D N +  +  A G  A  +QHE+DHL G L+ID + 
Sbjct: 134 YGDAGRARRTDVPGHWLDENGEPVVWQASGWPARIIQHEMDHLQGSLYIDKMD 186


>gi|326927579|ref|XP_003209969.1| PREDICTED: conserved oligomeric Golgi complex subunit 8-like,
           partial [Meleagris gallopavo]
          Length = 600

 Score = 65.5 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
            +D N       A G  A  +QHE+DHL+G+LFID + 
Sbjct: 549 GVDENGDPVSWEATGWAARIVQHEMDHLDGVLFIDRMD 586


>gi|169837919|ref|ZP_02871107.1| Peptide deformylase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 85

 Score = 63.9 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 45  IGLAAVQIGVLYRLVVIDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
             LAAVQ+  L R+V++  + D+    +    INP+II +  + +   EGCLS+      
Sbjct: 16  AALAAVQVDKLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGK 75

Query: 104 VKRSAFITVR 113
           V R   + V 
Sbjct: 76  VPRYNKVRVS 85


>gi|118382105|ref|XP_001024212.1| polypeptide deformylase family protein [Tetrahymena thermophila]
 gi|89305979|gb|EAS03967.1| polypeptide deformylase family protein [Tetrahymena thermophila
            SB210]
          Length = 1144

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 14/135 (10%)

Query: 21   IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--DLQDHA----------H 68
            +  ++  I + I  + +        G +A+Q G + R  V+  +++D             
Sbjct: 910  VPHVSLQIKSQIRELKKFASENQLTGFSAIQAGYIDRFFVLSKEVKDQQQSTWKTQKLYP 969

Query: 69   RKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                  +INPKI+    +   +   E   + P   A V R   + VRY D +        
Sbjct: 970  TDQYKTYINPKIVEICQNGQQNNEIELSPTFPFLDAYVSRYLSVKVRYYDEDMDEVEETI 1029

Query: 127  DGLLATCLQHELDHL 141
                +   QH  D L
Sbjct: 1030 QNFESRAFQHFYDFL 1044


>gi|167947582|ref|ZP_02534656.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 58

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           D   +      +G  A  LQHE+DHL+GILF+D L   + D+  +K+
Sbjct: 1   DPYGEPLEFDMEGYEARALQHEVDHLDGILFVDRLVSRRTDLFQRKV 47


>gi|153880447|ref|ZP_02004994.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS]
 gi|152063089|gb|EDN65006.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS]
          Length = 47

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 27/33 (81%)

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
           +  +G+LA C+QHE+DHLNG LF+D+LS LKR 
Sbjct: 1   MTTEGVLAVCIQHEIDHLNGKLFVDYLSSLKRQ 33


>gi|213027380|ref|ZP_03341827.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 44

 Score = 62.4 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +LA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 1   MLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 40


>gi|260221951|emb|CBA31028.1| hypothetical protein Csp_C26500 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 48

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + ADGLLA C+QHE+DHL G +F+++LS LKR+ I  KM K  +  
Sbjct: 1   MEADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIKAKREE 46


>gi|255633238|gb|ACU16975.1| unknown [Glycine max]
          Length = 125

 Score = 58.9 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI 45
           +V +PDP LR  ++ I   +  +  L+  M +VMY  DGI
Sbjct: 77  IVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKADGI 116


>gi|118371117|ref|XP_001018758.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|89300525|gb|EAR98513.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 1142

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 27/172 (15%)

Query: 25   NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI------NP 78
               +   I +M +  +      L++ QIG+   +VV   +   ++     ++      NP
Sbjct: 872  TKQLKQSILDMKKTAFVYQLPYLSSNQIGIEKSVVVFSNKIVENKYYDSEYVKFDTYLNP 931

Query: 79   KIITFS---------------------DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            KI   S                            E C S     + V+R   I ++YMD 
Sbjct: 932  KITKISNVINKQSNIFFTIYHQSLFSKKQKLEDFEECTSTFGIESQVERHTDILIQYMDE 991

Query: 118  NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                +     G  +   Q  +D  +G L I       ++ I++K   L   +
Sbjct: 992  EGNMKEEEMSGFKSRLFQQAIDLQSGKLPIKWNISKGKNRISEKYLNLQNAK 1043


>gi|309805322|ref|ZP_07699372.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c]
 gi|308165322|gb|EFO67555.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c]
          Length = 100

 Score = 55.8 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 14/89 (15%)

Query: 5  PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD------------GIGLAAVQ 51
           +V   + +LR+V + +   +N     L ++M++ + ++             G+GLAA Q
Sbjct: 6  DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65

Query: 52 IGVLYRLVVIDLQ-DHAHRKNPMVFINPK 79
          +G   ++  + +  D  +      F+NPK
Sbjct: 66 VGESVQMAALLVPDDQGNIIFKETFVNPK 94


>gi|169837912|ref|ZP_02871100.1| hypothetical protein cdivTM_12604 [candidate division TM7
           single-cell isolate TM7a]
          Length = 68

 Score = 54.3 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           ++Y++ N +  +   + + A   QHE DH+ GILF D LS L + ++ KK+  L +
Sbjct: 1   MKYLNENGEEVVEELEEMWARAFQHEFDHIEGILFTDRLSILNKRLVAKKLDVLKK 56


>gi|146320223|ref|YP_001199934.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33]
 gi|145691029|gb|ABP91534.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33]
          Length = 53

 Score = 53.1 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
                  R   I V + D + +   +      A  +QHELDHL GI+ 
Sbjct: 6   GRYRPTTRYQEIEVEFFDASWKKISLKLTDFQAQIVQHELDHLEGIII 53


>gi|291561710|emb|CBL40509.1| N-formylmethionyl-tRNA deformylase [butyrate-producing bacterium
          SS3/4]
          Length = 98

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 11 DPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHA 67
          DP+ L + S    + +     +I ++L+ + +     +G+AA  IGV   ++V+      
Sbjct: 3  DPLFLAQKSTDATEAD---QQVIIDLLDTLRANLDHCVGMAANMIGVKKNIIVVAAGPFQ 59

Query: 68 HRKNPMVFINPKIITFSDDFSV 89
                  +NP I   +  F +
Sbjct: 60 -----FAMVNPVITKKTGAFII 76


>gi|302779762|ref|XP_002971656.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii]
 gi|300160788|gb|EFJ27405.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii]
          Length = 556

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           V++PDP LR  +  I   + ++  L   ML+V Y  DG+GL+  Q+G   
Sbjct: 73  VLYPDPKLRARNIRINSFDDNVKKL---MLDVTYRRDGVGLSTPQLGKGK 119


>gi|169838331|ref|ZP_02871519.1| hypothetical protein cdivTM_14746 [candidate division TM7
           single-cell isolate TM7a]
          Length = 54

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 49  AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           A Q+ +  R  V++      +      +NP+I+ FS++ +  +EGCLSIP  
Sbjct: 8   ANQVDIAKRFFVLEHDGILKK-----VVNPEILEFSEEIADMEEGCLSIPGV 54


>gi|291539324|emb|CBL12435.1| N-formylmethionyl-tRNA deformylase [Roseburia intestinalis XB6B4]
          Length = 63

 Score = 48.5 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 33/96 (34%)

Query: 51  QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
            IGV   ++V+              INP I   S  F   +EGCLS+   R+   R   I
Sbjct: 1   MIGVKKNIIVVAAGPFQ-----FAMINPVITRKSGAFET-EEGCLSLDGVRSC-TRYEEI 53

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146
                                     E+DH NGI+ 
Sbjct: 54  --------------------------EVDHCNGIVI 63


>gi|302776574|ref|XP_002971443.1| hypothetical protein SELMODRAFT_412157 [Selaginella moellendorffii]
 gi|300160575|gb|EFJ27192.1| hypothetical protein SELMODRAFT_412157 [Selaginella moellendorffii]
          Length = 239

 Score = 48.1 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 38/131 (29%)

Query: 35  MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EG 93
           ML+V Y  DG+GL+  Q+G               +    VF+NP I+ F  +      EG
Sbjct: 1   MLDVTYRRDGVGLSTPQLG---------------KGKGYVFVNPMIVKFGKEREADTLEG 45

Query: 94  CLSIPD--------YRADVKRSA----FITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
           CL             R +  R      +  ++ +DC+      +   L A          
Sbjct: 46  CLPFYGAQADRLISIRVESSRHQREEIWYRLQGLDCSNFPTWRWPWYLFAQ--------- 96

Query: 142 NGILFIDHLSR 152
            G+L+ID ++ 
Sbjct: 97  -GVLYIDQMTP 106


>gi|281202742|gb|EFA76944.1| hypothetical protein PPL_09696 [Polysphondylium pallidum PN500]
          Length = 614

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
             D + + + I ADG+++ CLQHE DHL G +FI+ L 
Sbjct: 55  GCDISGKDRSIEADGIISACLQHENDHLLGRVFIERLK 92


>gi|169838808|ref|ZP_02871996.1| hypothetical protein cdivTM_17171 [candidate division TM7
           single-cell isolate TM7a]
          Length = 143

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
           +L   LQHE+DH NGI+FIDH+ + K+D   K
Sbjct: 35  ILVRVLQHEIDHTNGIVFIDHI-KNKKDAFYK 65


>gi|169839308|ref|ZP_02872496.1| hypothetical protein cdivTM_19702 [candidate division TM7
           single-cell isolate TM7a]
          Length = 56

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134
           GCLS+      V R   + V+ ++ + +   I A+G+ +   
Sbjct: 2   GCLSVSKVYGKVPRYNKVRVKALNEDGKEIRIKAEGIPSKSF 43


>gi|302765901|ref|XP_002966371.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii]
 gi|300165791|gb|EFJ32398.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii]
          Length = 374

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           V++PDP LR  +  I   + ++  L   ML+V Y  DG+GL+  ++G   
Sbjct: 73  VLYPDPKLRARNIRINSFDDNVKKL---MLDVTYRRDGVGLSTPRLGKGK 119


>gi|167950136|ref|ZP_02537210.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 40

 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 77  NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           NP+I +  D F + +EGCLS+PDY  +V R+  I +   D
Sbjct: 2   NPEI-SKWDGFELGREGCLSVPDYTGNVIRAERIKLTAQD 40


>gi|163750342|ref|ZP_02157583.1| polypeptide deformylase [Shewanella benthica KT99]
 gi|161330014|gb|EDQ00999.1| polypeptide deformylase [Shewanella benthica KT99]
          Length = 57

 Score = 43.1 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149
           V + D N         G +A   QHE  HL GI  I+ 
Sbjct: 6   VSFQDLNGLEYHPSLTGFIARIFQHEYVHLQGITLIER 43


>gi|330881834|gb|EGH15983.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race
          4]
          Length = 32

 Score = 42.0 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 1  MVKKPLVIFPDPILRRVSRPIEKINSDIMNLI 32
          M    ++ FPD  LR +++P+  ++  I  L+
Sbjct: 1  MAILNILEFPDSRLRTIAKPVAMVDEGIRQLV 32


>gi|291534775|emb|CBL07887.1| N-formylmethionyl-tRNA deformylase [Roseburia intestinalis M50/1]
          Length = 61

 Score = 39.3 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 75  FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            INP I   S  F   +EGCLS+   R+   R   I V + +
Sbjct: 18  MINPVITRKSGAFET-EEGCLSLDGVRSC-TRYEEIEVDHCN 57


>gi|289805200|ref|ZP_06535829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 40

 Score = 38.9 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 134 LQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168
           +QHE+DHL G L    + S LK+  I +K+ KL +L
Sbjct: 1   MQHEMDHLVGKLVYSIICSPLKQQRIRQKVEKLDRL 36


>gi|253795648|ref|YP_003038744.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem]
 gi|253739956|gb|ACT34291.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem]
          Length = 166

 Score = 38.5 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 89  VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148
             +E CLS+    + V RS  +    +    +   +   G+ A C QHELDH+ G+L  D
Sbjct: 86  ESREACLSLTSAVSVVARSWRVCAVALAA--RAGALSVRGVAACCCQHELDHVVGVLIAD 143


>gi|77409503|ref|ZP_00786192.1| polypeptide deformylase, putative [Streptococcus agalactiae COH1]
 gi|77171887|gb|EAO75067.1| polypeptide deformylase, putative [Streptococcus agalactiae COH1]
          Length = 32

 Score = 38.5 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           + Q I      A   QHELDHL GIL 
Sbjct: 6   KEQQIKLTDFPAQICQHELDHLEGILI 32


>gi|303242038|ref|ZP_07328530.1| hypothetical protein AceceDRAFT_3878 [Acetivibrio cellulolyticus
           CD2]
 gi|302590456|gb|EFL60212.1| hypothetical protein AceceDRAFT_3878 [Acetivibrio cellulolyticus
           CD2]
          Length = 36

 Score = 38.1 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           +   GLLA    HE+DHL   L ID +    +  I
Sbjct: 2   VEGTGLLAWEFCHEIDHLEQSLLIDKIIPGTKKSI 36


>gi|332308597|ref|YP_004436448.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175926|gb|AEE25180.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1001

 Score = 37.7 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 129 LLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168
           L A  +QHE+D+   I F DHL   ++RD+  +K+ + + L
Sbjct: 750 LTANTMQHEIDYYLRIGFTDHLAKPIERDVFIRKVRQYLNL 790


>gi|307321264|ref|ZP_07600665.1| hypothetical protein SinmeDRAFT_5123 [Sinorhizobium meliloti AK83]
 gi|306893074|gb|EFN23859.1| hypothetical protein SinmeDRAFT_5123 [Sinorhizobium meliloti AK83]
          Length = 221

 Score = 37.0 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMIT-KKMSKLVQL 168
            +  C  HE  HLNG LF+D + + +      +K+ K+++L
Sbjct: 124 WICFCPMHEFTHLNGRLFVDFVGKTETLWDDIRKLEKILKL 164


>gi|209524509|ref|ZP_03273057.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209494967|gb|EDZ95274.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 282

 Score = 36.6 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 13  ILRRVS-RPIEKINSDIMNLIDNMLEV--MYSTDG--IGLAAVQIGVLYRLVVIDLQDHA 67
           +LRR S + +E     +   +  + E   MY  +G  +GLAA ++G+ +     D  +  
Sbjct: 152 VLRRQSGKEVEFF--RVWQTLSYLFESEGMYDGEGYSMGLAASKVGLDFDFYRTDWFEFF 209

Query: 68  HRKNPMVFINPKIITFSDDFSVYQE 92
             K     IN      ++    ++E
Sbjct: 210 KDKIEKERINNGQSKLTEKKIYFEE 234


>gi|302023399|ref|ZP_07248610.1| peptide deformylase [Streptococcus suis 05HAS68]
          Length = 27

 Score = 35.8 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146
           +   +      A  +QHELDHL GI+ 
Sbjct: 1   KKISLKLTDFQAQIVQHELDHLEGIII 27


>gi|169841315|ref|ZP_02874428.1| hypothetical protein cdivTM_29458 [candidate division TM7
           single-cell isolate TM7a]
          Length = 33

 Score = 35.8 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 113 RYMDCNAQHQIIYADGLLATCLQH 136
           + ++ + +   I A+G LA  LQH
Sbjct: 8   KALNEDGKEIRIKAEGFLARVLQH 31


>gi|315647001|ref|ZP_07900115.1| putative transcriptional regulator [Paenibacillus vortex V453]
 gi|315277653|gb|EFU40978.1| putative transcriptional regulator [Paenibacillus vortex V453]
          Length = 213

 Score = 35.0 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMS 163
           E++H+ G LF+D L + +R  + +K  
Sbjct: 96  EINHMFGELFVDELFKRRRKRLEQKYQ 122


>gi|307728644|ref|YP_003905868.1| short-chain dehydrogenase/reductase SDR [Burkholderia sp.
          CCGE1003]
 gi|307583179|gb|ADN56577.1| short-chain dehydrogenase/reductase SDR [Burkholderia sp.
          CCGE1003]
          Length = 250

 Score = 35.0 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 10 PDPILRRVSRPIEKINSDIMNLIDNM--LEVMYSTDGIGLAAV 50
          P P LR ++  +   N  I   +++   L+V+ +  G GLAA 
Sbjct: 42 PSPRLRVLALDVTD-NESIRRALEDAGPLDVLVNNAGFGLAAP 83


>gi|325848969|ref|ZP_08170479.1| hypothetical protein HMPREF9246_1249 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480613|gb|EGC83675.1| hypothetical protein HMPREF9246_1249 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 352

 Score = 34.7 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 76  INPKIITFSDDFSVYQE----GCLSIPDYRADVKR---SAFITVRYMDCNAQHQIIYADG 128
           +NPKII               G  S PD   D+ R       TV Y   + + Q I++  
Sbjct: 176 LNPKIIRKEHGNCCDWCKEIVGTYSYPDVPEDIYRRHRHCRCTVDYYPGDGKKQDIWSKK 235

Query: 129 L 129
            
Sbjct: 236 W 236


>gi|111023288|ref|YP_706260.1| sensor histidine kinase [Rhodococcus jostii RHA1]
 gi|110822818|gb|ABG98102.1| sensor histidine kinase [Rhodococcus jostii RHA1]
          Length = 590

 Score = 34.7 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGV 54
           DP+LRR S  +         L+ ++LE+     G+  LAA Q+ V
Sbjct: 331 DPVLRRSSELLVAELDRFEGLLADLLEISRHDAGVAELAAEQLDV 375


>gi|158333851|ref|YP_001515023.1| lignostilbene-alpha,beta-dioxygenase [Acaryochloris marina
           MBIC11017]
 gi|158304092|gb|ABW25709.1| lignostilbene-alpha,beta-dioxygenase, putative [Acaryochloris
           marina MBIC11017]
          Length = 488

 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 50  VQ-IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
            Q +G  +R V + + D + +  P+  I  K+   S +  ++     + P     V R  
Sbjct: 367 PQWVGKEHRYVYMSVCDSSDKNGPLQAIL-KLDKESGEQQIWSVAPRAFPGEPIFVPRPD 425


>gi|226365795|ref|YP_002783578.1| two-component histidine kinase MtrB [Rhodococcus opacus B4]
 gi|226244285|dbj|BAH54633.1| two-component histidine kinase MtrB [Rhodococcus opacus B4]
          Length = 590

 Score = 34.7 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 11  DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGV 54
           DP+LRR S  +         L+ ++LE+     G+  LAA Q+ V
Sbjct: 331 DPVLRRSSELLVAELDRFEGLLADLLEISRHDAGVAELAAEQLDV 375


>gi|318077238|ref|ZP_07984570.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 195

 Score = 34.3 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 12/64 (18%)

Query: 18  SRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + P+ + +             +I  ++D +L       G+GL+A QIGV     ++    
Sbjct: 132 AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLSAPQIGVPRAAALVQPPW 191

Query: 66  HAHR 69
              R
Sbjct: 192 GRRR 195


>gi|60359832|dbj|BAD90135.1| mFLJ00359 protein [Mus musculus]
          Length = 1108

 Score = 34.3 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC------LSI-- 97
           GL+  Q GV Y L  +         +  +  N  ++TF+ +    +  C      +S   
Sbjct: 627 GLS--QTGVTYVLKAMSTCGTLEDLHISLLSNTVVLTFAQEPREQEGSCKGRAPLISFVS 684

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
           P      +RS  I + +    A+H     + L A+C  H LDHL+
Sbjct: 685 PVTSELSQRSRRIRLTHCGFLAKHTETLCEALRASCQTHNLDHLD 729


>gi|298675922|ref|YP_003727672.1| hypothetical protein Metev_2047 [Methanohalobium evestigatum
           Z-7303]
 gi|298288910|gb|ADI74876.1| protein of unknown function DUF785 [Methanohalobium evestigatum
           Z-7303]
          Length = 180

 Score = 34.3 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 17/84 (20%)

Query: 73  MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-------NAQHQIIY 125
            +F+NP+II         ++   S    R  V+R   ITV+             +   + 
Sbjct: 80  YLFLNPEIINKQGSVYRLEK--CSKRGERVLVERPYRITVKGERIILAQVHPEKKKIEVS 137

Query: 126 ADGLLATCL--------QHELDHL 141
                +            HE++HL
Sbjct: 138 EPEYKSIIFTGSPAYSAAHEIEHL 161


>gi|317507216|ref|ZP_07964967.1| hypothetical protein HMPREF9336_01339 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316254489|gb|EFV13808.1| hypothetical protein HMPREF9336_01339 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 273

 Score = 33.9 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 11/77 (14%)

Query: 38  VMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI 97
            +   DG            RL  +          P+  + PK+ + S        G  ++
Sbjct: 57  TLEDADG----------NRRLFEMKPGAFLLEGKPVTLVRPKVGSLSGPLRTAS-GSTAV 105

Query: 98  PDYRADVKRSAFITVRY 114
           P   A V R++ I V  
Sbjct: 106 PGAPARVARASRIWVEG 122


>gi|297618092|ref|YP_003703251.1| hypothetical protein Slip_1934 [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145929|gb|ADI02686.1| hypothetical protein Slip_1934 [Syntrophothermus lipocalidus DSM
           12680]
          Length = 178

 Score = 33.9 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 19/47 (40%)

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145
              + V+R   I  R  +     +       +A   QHE+D ++ ++
Sbjct: 7   GTFSPVERRRSIVNRAQENPIHPEDWTFKDSVAAIFQHEIDTIDSVV 53


>gi|254692966|ref|NP_001028379.2| protein NLRC5 [Mus musculus]
 gi|306756308|sp|C3VPR6|NLRC5_MOUSE RecName: Full=Protein NLRC5
          Length = 1915

 Score = 33.5 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 46   GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC------LSI-- 97
            GL+  Q GV Y L  +         +  +  N  ++TF+ +    +  C      +S   
Sbjct: 911  GLS--QTGVTYVLKAMSTCGTLEDLHISLLNNTVVLTFAQEPREQEGSCKGRAPLISFVS 968

Query: 98   PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            P      +RS  I + +    A+H     + L A+C  H LDHL+
Sbjct: 969  PVTSELSQRSRRIRLTHCGFLAKHTETLCEALRASCQTHNLDHLD 1013


>gi|227809548|gb|ACP40992.1| NLRC5 [Mus musculus]
          Length = 1915

 Score = 33.5 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 46   GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC------LSI-- 97
            GL+  Q GV Y L  +         +  +  N  ++TF+ +    +  C      +S   
Sbjct: 911  GLS--QTGVTYVLKAMSTCGTLEDLHISLLNNTVVLTFAQEPREQEGSCKGRAPLISFVS 968

Query: 98   PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
            P      +RS  I + +    A+H     + L A+C  H LDHL+
Sbjct: 969  PVTSELSQRSRRIRLTHCGFLAKHTETLCEALRASCQTHNLDHLD 1013


>gi|148679184|gb|EDL11131.1| mCG131281 [Mus musculus]
          Length = 894

 Score = 33.5 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 46  GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC------LSI-- 97
           GL+  Q GV Y L  +         +  +  N  ++TF+ +    +  C      +S   
Sbjct: 679 GLS--QTGVTYVLKAMSTCGTLEDLHISLLNNTVVLTFAQEPREQEGSCKGRAPLISFVS 736

Query: 98  PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142
           P      +RS  I + +    A+H     + L A+C  H LDHL+
Sbjct: 737 PVTSELSQRSRRIRLTHCGFLAKHTETLCEALRASCQTHNLDHLD 781


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.316    0.175    0.588 

Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,012,568,280
Number of Sequences: 14124377
Number of extensions: 197683362
Number of successful extensions: 632133
Number of sequences better than 10.0: 3503
Number of HSP's better than 10.0 without gapping: 6517
Number of HSP's successfully gapped in prelim test: 411
Number of HSP's that attempted gapping in prelim test: 615776
Number of HSP's gapped (non-prelim): 6994
length of query: 170
length of database: 4,842,793,630
effective HSP length: 129
effective length of query: 41
effective length of database: 3,020,748,997
effective search space: 123850708877
effective search space used: 123850708877
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.7 bits)
S2: 77 (33.9 bits)